Citrus Sinensis ID: 031001

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------
Protein Sequence
MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDAAYEKRVMITI
Secondary Structure (PSIPRED)
cccccccccccEEEEEcccccccccccccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccccccccccccccEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHccccccccHHHHHHHccHHHHHcccccHHcccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccEEEEEEcccccccccccccEEHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccccEEEccccEEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccccccccHHHHHHcccHHHHHHcccccccccEEEEc
Coil and Loop (DISEMBL)
mwldfdnaskpiYLYINssgtqnekkesvgaetDAYAIADAMAYCKSkvytvncgmAYGQAAMLLSVGakgyrglqpnsstklylpvvgrssgpvtdMWRKAKDLEANAESYIELLAkgtgkpkeeiakdiqrpkymQAKEAIVYGLADKIIDSQDAAYEKRVMITI
Flexible Loop (DISEMBL)
mwldfdnaskPIYLYInssgtqnekkesvGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLqpnsstklylpvvgrssgpvtDMWRKAKDLEANAESYIELlakgtgkpkeeiakdiqrpkyMQAKEAIVYGLADKIIDSQDAAYEKRVMITI
Low Complexity Region (SEG)
MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDAAYEKRVMITI
Disordered region (IsUnstruct)
********SKPIYLYIN***************TDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLA*****************KYMQAKEAIVYGLADKIIDSQDAAY********
Disordered Region (DISOPRED)
MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKII***************
Disordered Region (DISEMBL)
MWLDFDNASKPIYLYINSS***********AETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDAAYEKRVMITI
Disordered Region (DISPRO)
****FDNASKPIYLYINSSGT******SVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDAAYEKRVMIT*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDAAYEKRVMITI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	167	2.2.26 [Sep-21-2011]
Q9XJ35	387	ATP-dependent Clp proteas	yes	no	0.970	0.418	0.734	4e-68
Q9L4P4	228	Putative ATP-dependent Cl	yes	no	0.922	0.675	0.406	1e-29
P74466	225	Putative ATP-dependent Cl	N/A	no	0.916	0.68	0.409	1e-28
Q8LB10	305	ATP-dependent Clp proteas	no	no	0.970	0.531	0.371	6e-27
Q8L770	330	ATP-dependent Clp proteas	no	no	0.904	0.457	0.402	4e-26
Q7N0L3	207	ATP-dependent Clp proteas	yes	no	0.874	0.705	0.391	1e-22
Q7NEW1	218	ATP-dependent Clp proteas	yes	no	0.868	0.665	0.372	2e-21
Q60107	207	ATP-dependent Clp proteas	yes	no	0.874	0.705	0.371	1e-20
A1JNN2	207	ATP-dependent Clp proteas	yes	no	0.874	0.705	0.371	1e-20
O67357	201	ATP-dependent Clp proteas	yes	no	0.874	0.726	0.384	1e-20

>sp|Q9XJ35|CLPR1_ARATH ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic OS=Arabidopsis thaliana GN=CLPR1 PE=1 SV=1

 Score =  256 bits (655), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 119/162 (73%), Positives = 142/162 (87%)

Query: 1   MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQ 60
           MWLD+DN +KPIYLYINS GTQNEK E+VG+ET+AYAIAD ++YCKS VYT+NCGMA+GQ
Sbjct: 201 MWLDYDNPTKPIYLYINSPGTQNEKMETVGSETEAYAIADTISYCKSDVYTINCGMAFGQ 260

Query: 61  AAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGT 120
           AAMLLS+G KGYR +QP+SSTKLYLP V RSSG   DMW KAK+L+AN E YIELLAKGT
Sbjct: 261 AAMLLSLGKKGYRAVQPHSSTKLYLPKVNRSSGAAIDMWIKAKELDANTEYYIELLAKGT 320

Query: 121 GKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDAAYEKR 162
           GK KE+I +DI+RPKY+QA+ AI YG+ADKI DSQD+++EKR
Sbjct: 321 GKSKEQINEDIKRPKYLQAQAAIDYGIADKIADSQDSSFEKR 362

Required for chloroplast development and differentiation.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9L4P4|CLPR_SYNE7 Putative ATP-dependent Clp protease proteolytic subunit-like OS=Synechococcus elongatus (strain PCC 7942) GN=clpR PE=3 SV=1

 Score =  128 bits (322), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 63/155 (40%), Positives = 98/155 (63%), Gaps = 1/155 (0%)

Query: 1   MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQ 60
           ++L+FDN  KPIY YINS+GT     +++G ET+A+AI D M Y K  V+T+  G A G 
Sbjct: 64  LYLEFDNPEKPIYFYINSTGTSWYTGDAIGYETEAFAICDTMRYIKPPVHTICIGQAMGT 123

Query: 61  AAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGT 120
           AAM+LS G  G R   P+++  L  P  G + G  +D+  +AK++ AN  + +E+ A+ T
Sbjct: 124 AAMILSGGTPGNRASLPHATIVLNQPRTG-AQGQASDIQIRAKEVLANKRTMLEIFARNT 182

Query: 121 GKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155
           G+  + +A+D  R  YM   +A+ YGL D+++DS+
Sbjct: 183 GQDPDRLARDTDRMLYMTPAQAVEYGLIDRVLDSR 217

Has lost the two conserved residues (Ser and His) proposed to be part of the active site. Therefore it could be inactive.

Synechococcus elongatus (strain PCC 7942) (taxid: 1140)

>sp|P74466|CLPR_SYNY3 Putative ATP-dependent Clp protease proteolytic subunit-like OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=clpR PE=3 SV=1

 Score =  125 bits (314), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 63/154 (40%), Positives = 100/154 (64%), Gaps = 1/154 (0%)

Query: 1   MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQ 60
           ++L FD+  KPIY YINS+GT     ++VG ET+A+AI D + Y K  V+T+  G A G 
Sbjct: 62  LYLQFDDPDKPIYFYINSTGTSWYTGDAVGFETEAFAICDTLNYIKPPVHTICIGQAMGT 121

Query: 61  AAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGT 120
           AAM+LS G KGYR   P+++  L     G + G  TD+  +AK++ +N ++ +E+L+  T
Sbjct: 122 AAMILSSGTKGYRASLPHATIVLNQNRTG-AQGQATDIQIRAKEVISNKQTMLEILSLNT 180

Query: 121 GKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDS 154
           G+ +E++AKD+ R  Y+   +A  YGL D++++S
Sbjct: 181 GQTQEKLAKDMDRTFYLTPAQAKEYGLIDRVLES 214

Has lost the two conserved residues (Ser and His) proposed to be part of the active site. Therefore it could be inactive.

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

>sp|Q8LB10|CLPR4_ARATH ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic OS=Arabidopsis thaliana GN=CLPR4 PE=1 SV=1

 Score =  120 bits (300), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 61/164 (37%), Positives = 103/164 (62%), Gaps = 2/164 (1%)

Query: 1   MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQ 60
           ++L +++  KPIYLYINS+GT  +  E +G +T+A+AI D M Y K  ++T+  G A+G+
Sbjct: 135 LYLQYEDEEKPIYLYINSTGT-TKNGEKLGYDTEAFAIYDVMGYVKPPIFTLCVGNAWGE 193

Query: 61  AAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGT 120
           AA+LL+ GAKG R   P+S+  +  P + R  G  TD+    K+++      ++L +K  
Sbjct: 194 AALLLTAGAKGNRSALPSSTIMIKQP-IARFQGQATDVEIARKEIKHIKTEMVKLYSKHI 252

Query: 121 GKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDAAYEKRVM 164
           GK  E+I  D++RPKY    EA+ YG+ DK++ ++  + ++ V+
Sbjct: 253 GKSPEQIEADMKRPKYFSPTEAVEYGIIDKVVYNERGSQDRGVV 296

Arabidopsis thaliana (taxid: 3702)

>sp|Q8L770|CLPR3_ARATH ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic OS=Arabidopsis thaliana GN=CLPR3 PE=1 SV=1

 Score =  117 bits (292), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 62/154 (40%), Positives = 99/154 (64%), Gaps = 3/154 (1%)

Query: 1   MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQ 60
           M+L + +  +PIY+YINS+GT  +  E+VG E++ +AI D++   K++V+TV  G A GQ
Sbjct: 151 MYLQWLDPKEPIYIYINSTGTTRDDGETVGMESEGFAIYDSLMQLKNEVHTVCVGAAIGQ 210

Query: 61  AAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSG--PVTDMWRKAKDLEANAESYIELLAK 118
           A +LLS G KG R + P++   +  P V  SSG  P +D+  +AK++  N +  +ELL+K
Sbjct: 211 ACLLLSAGTKGKRFMMPHAKAMIQQPRVP-SSGLMPASDVLIRAKEVITNRDILVELLSK 269

Query: 119 GTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKII 152
            TG   E +A  ++RP YM A +A  +G+ D+I+
Sbjct: 270 HTGNSVETVANVMRRPYYMDAPKAKEFGVIDRIL 303

Arabidopsis thaliana (taxid: 3702)

>sp|Q7N0L3|CLPP_PHOLL ATP-dependent Clp protease proteolytic subunit OS=Photorhabdus luminescens subsp. laumondii (strain TT01) GN=clpP PE=3 SV=1

 Score =  105 bits (262), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 61/156 (39%), Positives = 85/156 (54%), Gaps = 10/156 (6%)

Query: 1   MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQ 60
           ++L+ +N  K I+LYINS G         G  T   +I D M + K  V T+  G A   
Sbjct: 62  LFLEAENPEKDIFLYINSPG---------GVITAGMSIYDTMQFIKPDVSTICMGQACSM 112

Query: 61  AAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGT 120
            A LL+ GAKG R   PNS   ++ P+ G   G  TD+   A+++        EL+AK T
Sbjct: 113 GAFLLTAGAKGKRICLPNSRVMIHQPL-GGFQGQATDIEIHAQEILKVKSRMNELMAKHT 171

Query: 121 GKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQD 156
           G+P EEIAKD +R +++ A EA+ YGL DKI   +D
Sbjct: 172 GRPIEEIAKDTERDRFLSADEAVEYGLVDKIFTHRD 207

Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins.

Photorhabdus luminescens subsp. laumondii (strain TT01) (taxid: 243265)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 9

EC: 2

>sp|Q7NEW1|CLPP2_GLOVI ATP-dependent Clp protease proteolytic subunit 2 OS=Gloeobacter violaceus (strain PCC 7421) GN=clpP2 PE=3 SV=1

 Score =  101 bits (251), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 57/153 (37%), Positives = 90/153 (58%), Gaps = 8/153 (5%)

Query: 1   MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQ 60
           ++L+ ++ +KPI +YINS G         G ET A+A+ D M + +  + T+  G+A G 
Sbjct: 58  LYLESEDNAKPIEIYINSPGV-------AGFETSAFAVYDTMRHVRMPIKTICLGLAGGF 110

Query: 61  AAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGT 120
           +A+L++ G KG R   PNS   LY P  G + G  TD+  +A++L     +  +LL+  T
Sbjct: 111 SALLMAAGTKGQRMSLPNSRIILYQPY-GGARGQATDINIRAQELLTTKRTLNQLLSIHT 169

Query: 121 GKPKEEIAKDIQRPKYMQAKEAIVYGLADKIID 153
           GK  E+I KD +R  YM  +EA+ YGL DK+++
Sbjct: 170 GKTVEQIDKDTERLFYMSPQEAVSYGLIDKVLE 202

Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins.

Gloeobacter violaceus (strain PCC 7421) (taxid: 251221)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 9

EC: 2

>sp|Q60107|CLPP_YEREN ATP-dependent Clp protease proteolytic subunit OS=Yersinia enterocolitica GN=clpP PE=3 SV=1

 Score = 99.4 bits (246), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 58/156 (37%), Positives = 82/156 (52%), Gaps = 10/156 (6%)

Query: 1   MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQ 60
           ++L+ +N  K I+LYINS G         G  T   +I D M + K  V T+  G A   
Sbjct: 62  LFLEAENPEKDIFLYINSPG---------GVITAGMSIYDTMQFIKPDVSTICMGQACSM 112

Query: 61  AAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGT 120
            A LL+ GAKG R   PNS   ++ P+ G   G  TD+   AK++        EL+AK T
Sbjct: 113 GAFLLTAGAKGKRFCLPNSRVMIHQPL-GGFQGQATDIEIHAKEILKVKSRMNELMAKHT 171

Query: 121 GKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQD 156
           GK  EEI +D +R +++ A EA+ YGL D +   +D
Sbjct: 172 GKSLEEIERDTERDRFLSADEAVEYGLVDSVFTRRD 207

Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins.

Yersinia enterocolitica (taxid: 630)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 9

EC: 2

>sp|A1JNN2|CLPP_YERE8 ATP-dependent Clp protease proteolytic subunit OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=clpP PE=3 SV=1

 Score = 99.4 bits (246), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 58/156 (37%), Positives = 82/156 (52%), Gaps = 10/156 (6%)

Query: 1   MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQ 60
           ++L+ +N  K I+LYINS G         G  T   +I D M + K  V T+  G A   
Sbjct: 62  LFLEAENPEKDIFLYINSPG---------GVITAGMSIYDTMQFIKPDVSTICMGQACSM 112

Query: 61  AAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGT 120
            A LL+ GAKG R   PNS   ++ P+ G   G  TD+   AK++        EL+AK T
Sbjct: 113 GAFLLTAGAKGKRFCLPNSRVMIHQPL-GGFQGQATDIEIHAKEILKVKSRMNELMAKHT 171

Query: 121 GKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQD 156
           GK  EEI +D +R +++ A EA+ YGL D +   +D
Sbjct: 172 GKSLEEIERDTERDRFLSADEAVEYGLVDSVFTRRD 207

Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins.

Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) (taxid: 393305)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 9

EC: 2

>sp|O67357|CLPP_AQUAE ATP-dependent Clp protease proteolytic subunit OS=Aquifex aeolicus (strain VF5) GN=clpP PE=3 SV=1

 Score = 99.0 bits (245), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 60/156 (38%), Positives = 88/156 (56%), Gaps = 10/156 (6%)

Query: 1   MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQ 60
           ++L+  +  K IYLYINS G         G+ T   AI D M Y K  V T+  G A   
Sbjct: 56  LFLESQDPDKDIYLYINSPG---------GSVTAGLAIYDTMQYIKPDVVTICMGQAASM 106

Query: 61  AAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGT 120
            A+LL+ GA G R   P+S   ++ P+ G   G  TD+   A++++   E  I++LAK T
Sbjct: 107 GAILLAAGAPGKRYALPHSRIMIHQPL-GGIQGQATDIIIHAEEIKRIKEMLIDILAKHT 165

Query: 121 GKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQD 156
           G+PK++IA DI+R  +M   EA  YGL DK+I+ ++
Sbjct: 166 GQPKDKIANDIERDYFMSPYEAKDYGLIDKVIEKRE 201

Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins.

Aquifex aeolicus (strain VF5) (taxid: 224324)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 9

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	167
225428973	388	PREDICTED: ATP-dependent Clp protease pr	0.970	0.417	0.814	5e-72
255573147	308	ATP-dependent Clp protease proteolytic s	0.970	0.525	0.790	2e-69
224103735	391	predicted protein [Populus trichocarpa]	0.970	0.414	0.765	6e-69
255639455	364	unknown [Glycine max]	0.970	0.445	0.768	7e-68
356536107	372	PREDICTED: ATP-dependent Clp protease pr	0.970	0.435	0.768	9e-68
356575728	372	PREDICTED: ATP-dependent Clp protease pr	0.970	0.435	0.762	2e-67
18402863	387	ATP-dependent Clp protease proteolytic s	0.970	0.418	0.734	2e-66
297852688	387	hypothetical protein ARALYDRAFT_891918 [	0.970	0.418	0.734	2e-66
302773329	300	hypothetical protein SELMODRAFT_65351 [S	0.934	0.52	0.743	7e-63
302807086	357	hypothetical protein SELMODRAFT_424284 [	0.934	0.436	0.743	8e-63

>gi|225428973|ref|XP_002264383.1| PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic [Vitis vinifera] gi|296083061|emb|CBI22465.3| unnamed protein product [Vitis vinifera]

 Score =  275 bits (703), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 132/162 (81%), Positives = 145/162 (89%)

Query: 1   MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQ 60
           MWLDFDN SKPIYLYINS+GTQNEK E+VG+ET+AYAIAD+MAYCKS VYTVNCG AYGQ
Sbjct: 199 MWLDFDNPSKPIYLYINSTGTQNEKMETVGSETEAYAIADSMAYCKSDVYTVNCGTAYGQ 258

Query: 61  AAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGT 120
           AAMLLSVGAKGYRGLQPN+STKLYLP V RSSG   DMW KAK+L+AN+E YIELLAKGT
Sbjct: 259 AAMLLSVGAKGYRGLQPNASTKLYLPKVNRSSGATIDMWIKAKELDANSEYYIELLAKGT 318

Query: 121 GKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDAAYEKR 162
           GK KEEI KD++RPKY+QA+EAI YGLADKII S D AYEKR
Sbjct: 319 GKTKEEIKKDVERPKYLQAQEAIDYGLADKIISSMDPAYEKR 360

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255573147|ref|XP_002527503.1| ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis] gi|223533143|gb|EEF34901.1| ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis]

 Score =  266 bits (680), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 128/162 (79%), Positives = 143/162 (88%)

Query: 1   MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQ 60
           M+LD+D++SKPIYLYINSSGTQNEK E+VG+ET+AYAIADAM YCKS VYTVNCGMAYGQ
Sbjct: 120 MYLDYDDSSKPIYLYINSSGTQNEKMETVGSETEAYAIADAMFYCKSTVYTVNCGMAYGQ 179

Query: 61  AAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGT 120
           A MLLS+GAKGYR LQPN+STKLYLP V RSSG V DMW KAK+L+AN E YI+LLAKGT
Sbjct: 180 AGMLLSLGAKGYRALQPNASTKLYLPKVNRSSGAVIDMWIKAKELDANTEYYIDLLAKGT 239

Query: 121 GKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDAAYEKR 162
           GK KEEI KDIQRPKY  +KEAI YGLADKI+DS D A+EKR
Sbjct: 240 GKTKEEINKDIQRPKYFNSKEAIEYGLADKIVDSSDDAFEKR 281

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224103735|ref|XP_002313173.1| predicted protein [Populus trichocarpa] gi|222849581|gb|EEE87128.1| predicted protein [Populus trichocarpa]

 Score =  265 bits (676), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 124/162 (76%), Positives = 144/162 (88%)

Query: 1   MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQ 60
           M+LD+++ SKPIYLYINSSGTQNEK E+VG+ET+AYAIAD M+YCKS +YTVNCGMAYGQ
Sbjct: 203 MYLDYEDPSKPIYLYINSSGTQNEKMETVGSETEAYAIADIMSYCKSTIYTVNCGMAYGQ 262

Query: 61  AAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGT 120
           AAMLLS+GAKGYR LQPNSSTKLYLP V RSSG   DMW KAK+L+AN E YIELLAKGT
Sbjct: 263 AAMLLSLGAKGYRALQPNSSTKLYLPKVNRSSGAAVDMWIKAKELDANTEYYIELLAKGT 322

Query: 121 GKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDAAYEKR 162
           GKPKEE+ KDIQRPKY++A+EAI YG+ADK++ S D A+EKR
Sbjct: 323 GKPKEELVKDIQRPKYLKAQEAIDYGIADKLLSSNDDAFEKR 364

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255639455|gb|ACU20022.1| unknown [Glycine max]

 Score =  261 bits (667), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 126/164 (76%), Positives = 144/164 (87%), Gaps = 2/164 (1%)

Query: 1   MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQ 60
           MWLD+DN SKPIYLYINSSGT NEK E+VG+ET+AY+IAD M+Y K+ VYTVNCGMA+GQ
Sbjct: 181 MWLDYDNPSKPIYLYINSSGTLNEKNETVGSETEAYSIADMMSYVKADVYTVNCGMAFGQ 240

Query: 61  AAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGT 120
           AAMLLS+G KGYR +QPNSSTKLYLP V RSSG V DMW KAK+LEAN E YIELLAKGT
Sbjct: 241 AAMLLSLGTKGYRAVQPNSSTKLYLPKVNRSSGAVIDMWIKAKELEANTEYYIELLAKGT 300

Query: 121 GKPKEEIAKDIQRPKYMQAKEAIVYGLADKIID--SQDAAYEKR 162
           GK KEEIAKD+QRPKY+QA++AI YG+ADKIID  S+D A+EKR
Sbjct: 301 GKSKEEIAKDVQRPKYLQAQDAIDYGIADKIIDSSSRDVAFEKR 344

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356536107|ref|XP_003536581.1| PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic-like [Glycine max]

 Score =  261 bits (666), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 126/164 (76%), Positives = 144/164 (87%), Gaps = 2/164 (1%)

Query: 1   MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQ 60
           MWLD+DN SKPIYLYINSSGT NEK E+VG+ET+AY+IAD M+Y K+ VYTVNCGMA+GQ
Sbjct: 181 MWLDYDNPSKPIYLYINSSGTLNEKNETVGSETEAYSIADMMSYVKADVYTVNCGMAFGQ 240

Query: 61  AAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGT 120
           AAMLLS+G KGYR +QPNSSTKLYLP V RSSG V DMW KAK+LEAN E YIELLAKGT
Sbjct: 241 AAMLLSLGTKGYRAVQPNSSTKLYLPKVNRSSGAVIDMWIKAKELEANTEYYIELLAKGT 300

Query: 121 GKPKEEIAKDIQRPKYMQAKEAIVYGLADKIID--SQDAAYEKR 162
           GK KEEIAKD+QRPKY+QA++AI YG+ADKIID  S+D A+EKR
Sbjct: 301 GKSKEEIAKDVQRPKYLQAQDAIDYGIADKIIDSSSRDVAFEKR 344

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356575728|ref|XP_003555989.1| PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic-like [Glycine max]

 Score =  259 bits (663), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 125/164 (76%), Positives = 144/164 (87%), Gaps = 2/164 (1%)

Query: 1   MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQ 60
           MWLD+DN +KPIYLYINSSGT NEK E+VG+ET+AY+IAD M+Y K+ VYTVNCGMA+GQ
Sbjct: 181 MWLDYDNPTKPIYLYINSSGTLNEKNETVGSETEAYSIADMMSYVKADVYTVNCGMAFGQ 240

Query: 61  AAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGT 120
           AAMLLS+G KGYR +QPNSSTKLYLP V RSSG V DMW KAK+LEAN E YIELLAKGT
Sbjct: 241 AAMLLSLGTKGYRAVQPNSSTKLYLPKVNRSSGAVIDMWIKAKELEANTEYYIELLAKGT 300

Query: 121 GKPKEEIAKDIQRPKYMQAKEAIVYGLADKIID--SQDAAYEKR 162
           GK KEEIAKD+QRPKY+QA++AI YG+ADKIID  S+D A+EKR
Sbjct: 301 GKSKEEIAKDVQRPKYLQAQDAIDYGIADKIIDSSSRDVAFEKR 344

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18402863|ref|NP_564560.1| ATP-dependent Clp protease proteolytic subunit-related protein 1 [Arabidopsis thaliana] gi|75315328|sp|Q9XJ35.1|CLPR1_ARATH RecName: Full=ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic; Short=ClpR1; AltName: Full=nClpP5; Flags: Precursor gi|8569101|gb|AAF76446.1|AC015445_13 Identical to nClpP5 from Arabidopsis thaliana gb|AB022330 and contains prenyltransferase PF|00432 and CLP protease PF|00574 domains. ESTs gb|H76908, gb|AA605567, gb|T21932, gb|T22976 come from this gene [Arabidopsis thaliana] gi|5360595|dbj|BAA82069.1| nClpP5 [Arabidopsis thaliana] gi|15010752|gb|AAK74035.1| At1g49970/F2J10_5 [Arabidopsis thaliana] gi|23308343|gb|AAN18141.1| At1g49970/F2J10_5 [Arabidopsis thaliana] gi|332194380|gb|AEE32501.1| ATP-dependent Clp protease proteolytic subunit-related protein 1 [Arabidopsis thaliana]

 Score =  256 bits (655), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 119/162 (73%), Positives = 142/162 (87%)

Query: 1   MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQ 60
           MWLD+DN +KPIYLYINS GTQNEK E+VG+ET+AYAIAD ++YCKS VYT+NCGMA+GQ
Sbjct: 201 MWLDYDNPTKPIYLYINSPGTQNEKMETVGSETEAYAIADTISYCKSDVYTINCGMAFGQ 260

Query: 61  AAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGT 120
           AAMLLS+G KGYR +QP+SSTKLYLP V RSSG   DMW KAK+L+AN E YIELLAKGT
Sbjct: 261 AAMLLSLGKKGYRAVQPHSSTKLYLPKVNRSSGAAIDMWIKAKELDANTEYYIELLAKGT 320

Query: 121 GKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDAAYEKR 162
           GK KE+I +DI+RPKY+QA+ AI YG+ADKI DSQD+++EKR
Sbjct: 321 GKSKEQINEDIKRPKYLQAQAAIDYGIADKIADSQDSSFEKR 362

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297852688|ref|XP_002894225.1| hypothetical protein ARALYDRAFT_891918 [Arabidopsis lyrata subsp. lyrata] gi|297340067|gb|EFH70484.1| hypothetical protein ARALYDRAFT_891918 [Arabidopsis lyrata subsp. lyrata]

 Score =  256 bits (655), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 119/162 (73%), Positives = 142/162 (87%)

Query: 1   MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQ 60
           MWLD+DN +KPIYLYINS GTQNEK E+VG+ET+AYAIAD ++YCKS VYT+NCGMA+GQ
Sbjct: 201 MWLDYDNPTKPIYLYINSPGTQNEKMETVGSETEAYAIADTISYCKSDVYTINCGMAFGQ 260

Query: 61  AAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGT 120
           AAMLLS+G KGYR +QP+SSTKLYLP V RSSG   DMW KAK+L+AN E YIELLAKGT
Sbjct: 261 AAMLLSLGKKGYRAVQPHSSTKLYLPKVNRSSGAAIDMWIKAKELDANTEYYIELLAKGT 320

Query: 121 GKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDAAYEKR 162
           GK KE+I +DI+RPKY+QA+ AI YG+ADKI DSQD+++EKR
Sbjct: 321 GKSKEQINEDIKRPKYLQAQAAIDYGIADKIADSQDSSFEKR 362

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302773329|ref|XP_002970082.1| hypothetical protein SELMODRAFT_65351 [Selaginella moellendorffii] gi|300162593|gb|EFJ29206.1| hypothetical protein SELMODRAFT_65351 [Selaginella moellendorffii]

 Score =  244 bits (624), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 116/156 (74%), Positives = 136/156 (87%)

Query: 1   MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQ 60
           ++LDFDN SKPIYLYIN SGTQNEKKESVG ET+AYAIAD M+Y KSKVYTVNCGMA+GQ
Sbjct: 145 LFLDFDNPSKPIYLYINCSGTQNEKKESVGFETEAYAIADTMSYVKSKVYTVNCGMAFGQ 204

Query: 61  AAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGT 120
           AAMLLSVG KG+R +QP+SSTKLY P V +SSG   DM+ KAK+L++N + YI+LLAKGT
Sbjct: 205 AAMLLSVGEKGFRAVQPSSSTKLYAPKVNQSSGSAIDMFIKAKELDSNTKYYIDLLAKGT 264

Query: 121 GKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQD 156
           GKP+EEIAKDIQRPKY +AKEA+ YGLADK+I+  D
Sbjct: 265 GKPEEEIAKDIQRPKYFKAKEAVEYGLADKVIEEPD 300

Source: Selaginella moellendorffii

Species: Selaginella moellendorffii

Genus: Selaginella

Family: Selaginellaceae

Order: Selaginellales

Class: Isoetopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302807086|ref|XP_002985274.1| hypothetical protein SELMODRAFT_424284 [Selaginella moellendorffii] gi|300147102|gb|EFJ13768.1| hypothetical protein SELMODRAFT_424284 [Selaginella moellendorffii]

 Score =  244 bits (623), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 116/156 (74%), Positives = 136/156 (87%)

Query: 1   MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQ 60
           ++LDFDN SKPIYLYIN SGTQNEKKESVG ET+AYAIAD M+Y KSKVYTVNCGMA+GQ
Sbjct: 166 LFLDFDNPSKPIYLYINCSGTQNEKKESVGFETEAYAIADTMSYVKSKVYTVNCGMAFGQ 225

Query: 61  AAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGT 120
           AAMLLSVG KG+R +QP+SSTKLY P V +SSG   DM+ KAK+L++N + YI+LLAKGT
Sbjct: 226 AAMLLSVGEKGFRAVQPSSSTKLYAPKVNQSSGSAIDMFIKAKELDSNTKYYIDLLAKGT 285

Query: 121 GKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQD 156
           GKP+EEIAKDIQRPKY +AKEA+ YGLADK+I+  D
Sbjct: 286 GKPEEEIAKDIQRPKYFKAKEAVEYGLADKVIEEPD 321

Source: Selaginella moellendorffii

Species: Selaginella moellendorffii

Genus: Selaginella

Family: Selaginellaceae

Order: Selaginellales

Class: Isoetopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	167
TAIR|locus:2031070	387	CLPR1 "CLP protease proteolyti	0.970	0.418	0.734	8.8e-63
TAIR|locus:2130449	305	CLPR4 "CLP protease R subunit	0.970	0.531	0.371	1.3e-27
TIGR_CMR|CJE_0185	194	CJE_0185 "ATP-dependent Clp pr	0.856	0.737	0.372	1.4e-18
TAIR|locus:2034625	279	CLP2 "CLP protease proteolytic	0.850	0.508	0.388	1.4e-18
GENEDB_PFALCIPARUM|PF14_0348	244	PF14_0348 "ATP-dependent Clp p	0.928	0.635	0.346	2.8e-18
UNIPROTKB|Q8IL98	244	PF14_0348 "ATP-dependent Clp p	0.928	0.635	0.346	2.8e-18
TAIR|locus:2178282	241	NCLPP7 "nuclear-encoded CLP pr	0.868	0.601	0.335	2.8e-18
TIGR_CMR|CBU_0738	195	CBU_0738 "ATP-dependent Clp pr	0.844	0.723	0.384	3.6e-18
UNIPROTKB|P0A6G7	207	clpP [Escherichia coli K-12 (t	0.850	0.685	0.361	7.5e-18
TIGR_CMR|CHY_0325	195	CHY_0325 "ATP-dependent Clp pr	0.850	0.728	0.368	1.2e-17

TAIR|locus:2031070 CLPR1 "CLP protease proteolytic subunit 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 641 (230.7 bits), Expect = 8.8e-63, P = 8.8e-63
 Identities = 119/162 (73%), Positives = 142/162 (87%)

Query:     1 MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQ 60
             MWLD+DN +KPIYLYINS GTQNEK E+VG+ET+AYAIAD ++YCKS VYT+NCGMA+GQ
Sbjct:   201 MWLDYDNPTKPIYLYINSPGTQNEKMETVGSETEAYAIADTISYCKSDVYTINCGMAFGQ 260

Query:    61 AAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGT 120
             AAMLLS+G KGYR +QP+SSTKLYLP V RSSG   DMW KAK+L+AN E YIELLAKGT
Sbjct:   261 AAMLLSLGKKGYRAVQPHSSTKLYLPKVNRSSGAAIDMWIKAKELDANTEYYIELLAKGT 320

Query:   121 GKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDAAYEKR 162
             GK KE+I +DI+RPKY+QA+ AI YG+ADKI DSQD+++EKR
Sbjct:   321 GKSKEQINEDIKRPKYLQAQAAIDYGIADKIADSQDSSFEKR 362

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009840 "chloroplastic endopeptidase Clp complex" evidence=IDA

GO:0009532 "plastid stroma" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

TAIR|locus:2130449 CLPR4 "CLP protease R subunit 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 309 (113.8 bits), Expect = 1.3e-27, P = 1.3e-27
 Identities = 61/164 (37%), Positives = 103/164 (62%)

Query:     1 MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQ 60
             ++L +++  KPIYLYINS+GT  +  E +G +T+A+AI D M Y K  ++T+  G A+G+
Sbjct:   135 LYLQYEDEEKPIYLYINSTGT-TKNGEKLGYDTEAFAIYDVMGYVKPPIFTLCVGNAWGE 193

Query:    61 AAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGT 120
             AA+LL+ GAKG R   P+S+  +  P+  R  G  TD+    K+++      ++L +K  
Sbjct:   194 AALLLTAGAKGNRSALPSSTIMIKQPIA-RFQGQATDVEIARKEIKHIKTEMVKLYSKHI 252

Query:   121 GKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDAAYEKRVM 164
             GK  E+I  D++RPKY    EA+ YG+ DK++ ++  + ++ V+
Sbjct:   253 GKSPEQIEADMKRPKYFSPTEAVEYGIIDKVVYNERGSQDRGVV 296

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009532 "plastid stroma" evidence=IDA

GO:0000302 "response to reactive oxygen species" evidence=IMP

GO:0010468 "regulation of gene expression" evidence=IMP

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0032880 "regulation of protein localization" evidence=RCA

GO:0009536 "plastid" evidence=IDA

TIGR_CMR|CJE_0185 CJE_0185 "ATP-dependent Clp protease, proteolytic subunit ClpP" [Campylobacter jejuni RM1221 (taxid:195099)]

 Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
 Identities = 57/153 (37%), Positives = 85/153 (55%)

Query:     1 MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQ 60
             ++L+ ++ +K IYLYINS G         G  T  ++I D M Y K  V T+  G A   
Sbjct:    48 LFLEAEDPTKDIYLYINSPG---------GVITSGFSIYDTMNYIKPDVCTICIGQAASM 98

Query:    61 AAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGT 120
              A LLS GA+G R   PNS   ++ P+ G + G  TD+  +AK++        ++LAK T
Sbjct:    99 GAFLLSCGAEGKRFALPNSRIMIHQPL-GGARGQATDIEIQAKEILRLKTILNDILAKNT 157

Query:   121 GKPKEEIAKDIQRPKYMQAKEAIVYGLADKIID 153
              +   +IAKD +R  +M A+EA  YGL DK+++
Sbjct:   158 KQKVAKIAKDTERDFFMSAQEAKEYGLIDKVLE 190

GO:0009368 "endopeptidase Clp complex" evidence=ISS

TAIR|locus:2034625 CLP2 "CLP protease proteolytic subunit 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
 Identities = 59/152 (38%), Positives = 79/152 (51%)

Query:     1 MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQ 60
             ++LD  + S+ IY+Y+N  G         G  T + AI D M   KS V T   G+AY  
Sbjct:   119 LYLDTLDDSRRIYMYLNGPG---------GDLTPSLAIYDTMKSLKSPVGTHCVGLAYNL 169

Query:    61 AAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGT 120
             A  LL+ G KG+R   P S   L  P  G + G   D+  +AK+L    +     LAK T
Sbjct:   170 AGFLLAAGEKGHRFAMPLSRIALQSPA-GAARGQADDIQNEAKELSRIRDYLFNELAKNT 228

Query:   121 GKPKEEIAKDIQRPKYMQAKEAIVYGLADKII 152
             G+P E + KD+ R K   A+EAI YGL DKI+
Sbjct:   229 GQPAERVFKDLSRVKRFNAEEAIEYGLIDKIV 260

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009840 "chloroplastic endopeptidase Clp complex" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0010287 "plastoglobule" evidence=IDA

GO:0009658 "chloroplast organization" evidence=IMP

GO:0006364 "rRNA processing" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042793 "transcription from plastid promoter" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GENEDB_PFALCIPARUM|PF14_0348 PF14_0348 "ATP-dependent Clp protease proteolytic subunit, putative" [Plasmodium falciparum (taxid:5833)]

 Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
 Identities = 54/156 (34%), Positives = 84/156 (53%)

Query:     1 MWLDFDNASKPIYLYINSSGT-QNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYG 59
             ++L++++  KPI+LYINS+G   N K  ++   TD  +I D + Y  S VYT   G AYG
Sbjct:    89 LYLEYESKRKPIHLYINSTGDIDNNKIINLNGITDVISIVDVINYISSDVYTYCLGKAYG 148

Query:    60 QAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKG 119
              A +L S G KGYR    NSS  L            T++  + K++    +  IE+++K 
Sbjct:   149 IACILASSGKKGYRFSLKNSSFCLNQSYSIIPFNQATNIEIQNKEIMNTKKKVIEIISKN 208

Query:   120 TGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155
             T K    I+  ++R KY  A EA+ + L D I++ +
Sbjct:   209 TEKDTNVISNVLERDKYFNADEAVDFKLIDHILEKE 244

GO:0020011 "apicoplast" evidence=ISS

UNIPROTKB|Q8IL98 PF14_0348 "ATP-dependent Clp protease proteolytic subunit" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
 Identities = 54/156 (34%), Positives = 84/156 (53%)

Query:     1 MWLDFDNASKPIYLYINSSGT-QNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYG 59
             ++L++++  KPI+LYINS+G   N K  ++   TD  +I D + Y  S VYT   G AYG
Sbjct:    89 LYLEYESKRKPIHLYINSTGDIDNNKIINLNGITDVISIVDVINYISSDVYTYCLGKAYG 148

Query:    60 QAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKG 119
              A +L S G KGYR    NSS  L            T++  + K++    +  IE+++K 
Sbjct:   149 IACILASSGKKGYRFSLKNSSFCLNQSYSIIPFNQATNIEIQNKEIMNTKKKVIEIISKN 208

Query:   120 TGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155
             T K    I+  ++R KY  A EA+ + L D I++ +
Sbjct:   209 TEKDTNVISNVLERDKYFNADEAVDFKLIDHILEKE 244

GO:0020011 "apicoplast" evidence=ISS

TAIR|locus:2178282 NCLPP7 "nuclear-encoded CLP protease P7" [Arabidopsis thaliana (taxid:3702)]

 Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
 Identities = 52/155 (33%), Positives = 85/155 (54%)

Query:     1 MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQ 60
             ++L+ +N SKPI++Y+NS G         G  T   AI D M Y +S + T+  G A   
Sbjct:    78 LYLESENPSKPIHMYLNSPG---------GHVTAGLAIYDTMQYIRSPISTICLGQAASM 128

Query:    61 AAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGT 120
             A++LL+ GAKG R   PN++  ++ P  G  SG   D+    K +    ++  EL  K T
Sbjct:   129 ASLLLAAGAKGQRRSLPNATVMIHQPS-GGYSGQAKDITIHTKQIVRVWDALNELYVKHT 187

Query:   121 GKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155
             G+P + +A ++ R  +M  +EA  +G+ D++ID +
Sbjct:   188 GQPLDVVANNMDRDHFMTPEEAKAFGIIDEVIDER 222

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0006508 "proteolysis" evidence=IEA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009840 "chloroplastic endopeptidase Clp complex" evidence=IDA

GO:0005759 "mitochondrial matrix" evidence=IDA

GO:0009532 "plastid stroma" evidence=IDA

GO:0008270 "zinc ion binding" evidence=IDA

GO:0050897 "cobalt ion binding" evidence=IDA

GO:0019243 "methylglyoxal catabolic process to D-lactate" evidence=RCA

TIGR_CMR|CBU_0738 CBU_0738 "ATP-dependent Clp protease, proteolytic subunit ClpP" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 220 (82.5 bits), Expect = 3.6e-18, P = 3.6e-18
 Identities = 58/151 (38%), Positives = 82/151 (54%)

Query:     1 MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQ 60
             ++L+ +N +K I LYINS G         GA T A AI D M + K  V T+  G A   
Sbjct:    50 LFLESENPNKDINLYINSPG---------GAVTSAMAIYDTMQFVKPDVRTLCIGQAASA 100

Query:    61 AAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGT 120
              A+LL+ GAKG R   P+SS  ++  V+G   G  TD+   AK  +  ++   ++LAK T
Sbjct:   101 GALLLAGGAKGKRHCLPHSSVMIH-QVLGGYQGQGTDIQIHAKQTQRVSDQLNQILAKHT 159

Query:   121 GKPKEEIAKDIQRPKYMQAKEAIVYGLADKI 151
             GK  E + KD  R  ++  +EA+ YGL D I
Sbjct:   160 GKDIERVEKDTNRDYFLTPEEAVEYGLIDSI 190

GO:0009368 "endopeptidase Clp complex" evidence=ISS

UNIPROTKB|P0A6G7 clpP [Escherichia coli K-12 (taxid:83333)]

 Score = 217 (81.4 bits), Expect = 7.5e-18, P = 7.5e-18
 Identities = 55/152 (36%), Positives = 80/152 (52%)

Query:     1 MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQ 60
             ++L+ +N  K IYLYINS G         G  T   +I D M + K  V T+  G A   
Sbjct:    62 LFLEAENPEKDIYLYINSPG---------GVITAGMSIYDTMQFIKPDVSTICMGQAASM 112

Query:    61 AAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGT 120
              A LL+ GAKG R   PNS   ++ P+ G   G  TD+   A+++        EL+A  T
Sbjct:   113 GAFLLTAGAKGKRFCLPNSRVMIHQPL-GGYQGQATDIEIHAREILKVKGRMNELMALHT 171

Query:   121 GKPKEEIAKDIQRPKYMQAKEAIVYGLADKII 152
             G+  E+I +D +R +++ A EA+ YGL D I+
Sbjct:   172 GQSLEQIERDTERDRFLSAPEAVEYGLVDSIL 203

GO:0009408 "response to heat" evidence=IEP

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0016020 "membrane" evidence=IDA

GO:0006515 "misfolded or incompletely synthesized protein catabolic process" evidence=IDA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0008236 "serine-type peptidase activity" evidence=IEA;IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009266 "response to temperature stimulus" evidence=EXP

TIGR_CMR|CHY_0325 CHY_0325 "ATP-dependent Clp protease, proteolytic subunit ClpP" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 215 (80.7 bits), Expect = 1.2e-17, P = 1.2e-17
 Identities = 56/152 (36%), Positives = 81/152 (53%)

Query:     1 MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQ 60
             ++L+ ++  K I+LYINS G         G  T   AI D M Y K  V T+  G A   
Sbjct:    50 LFLEAEDPEKDIHLYINSPG---------GVITAGMAIYDTMQYIKPDVSTICIGQAASM 100

Query:    61 AAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGT 120
              A LL+ GAKG R   P +   ++ P+ G   G  TD+   A+++    +   ELL K T
Sbjct:   101 GAFLLAAGAKGKRFSLPYARIMIHQPL-GGVQGQATDIDIHAREILRMRDMLNELLTKHT 159

Query:   121 GKPKEEIAKDIQRPKYMQAKEAIVYGLADKII 152
             G+PKE+I +D +R  +M A EA  YG+ D++I
Sbjct:   160 GQPKEKIERDTERDFFMSAAEAKEYGIIDEVI 191

GO:0009368 "endopeptidase Clp complex" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9XJ35	CLPR1_ARATH	No assigned EC number	0.7345	0.9700	0.4186	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.21	LOW CONFIDENCE prediction!
3rd Layer	3.4.21.92	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00001455001	RecName- Full=ATP-dependent Clp protease proteolytic subunit; (388 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	clpP	RecName- Full=ATP-dependent Clp protease proteolytic subunit; EC=3.4.21.92; AltName- Full=Endop [...] (112 aa)			•				•		0.568
	GSVIVG00035353001	SubName- Full=Chromosome undetermined scaffold_77, whole genome shotgun sequence; (493 aa)			•				•		0.439
	GSVIVG00031954001	SubName- Full=Chromosome chr18 scaffold_61, whole genome shotgun sequence; (595 aa)			•				•		0.425
	GSVIVG00037260001	SubName- Full=Chromosome chr16 scaffold_86, whole genome shotgun sequence; (389 aa)			•				•		0.418

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	167
cd07017	171	cd07017, S14_ClpP_2, Caseinolytic protease (ClpP)	1e-50
PRK12552	222	PRK12552, PRK12552, ATP-dependent Clp protease-lik	2e-44
pfam00574	182	pfam00574, CLP_protease, Clp protease	3e-36
COG0740	200	COG0740, ClpP, Protease subunit of ATP-dependent C	5e-36
PRK00277	200	PRK00277, clpP, ATP-dependent Clp protease proteol	3e-30
PRK12553	207	PRK12553, PRK12553, ATP-dependent Clp protease pro	1e-28
TIGR00493	192	TIGR00493, clpP, ATP-dependent Clp endopeptidase,	5e-27
CHL00028	200	CHL00028, clpP, ATP-dependent Clp protease proteol	1e-26
PRK12551	196	PRK12551, PRK12551, ATP-dependent Clp protease pro	3e-22
cd07013	162	cd07013, S14_ClpP, Caseinolytic protease (ClpP) is	3e-19
PRK14513	201	PRK14513, PRK14513, ATP-dependent Clp protease pro	3e-18
PRK14514	221	PRK14514, PRK14514, ATP-dependent Clp protease pro	1e-17
PRK14512	197	PRK14512, PRK14512, ATP-dependent Clp protease pro	3e-16
cd00394	161	cd00394, Clp_protease_like, Caseinolytic protease	3e-11
cd07016	160	cd07016, S14_ClpP_1, Caseinolytic protease (ClpP)	9e-10

>gnl|CDD|132928 cd07017, S14_ClpP_2, Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

 Score =  159 bits (405), Expect = 1e-50
 Identities = 62/151 (41%), Positives = 86/151 (56%), Gaps = 10/151 (6%)

Query: 1   MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQ 60
           ++L+ ++  KPIYLYINS G         G+ T   AI D M Y K  V T+  G+A   
Sbjct: 31  LYLESEDPKKPIYLYINSPG---------GSVTAGLAIYDTMQYIKPPVSTICLGLAASM 81

Query: 61  AAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGT 120
            A+LL+ G KG R   PNS   ++ P+ G + G  +D+  +AK++        E+LAK T
Sbjct: 82  GALLLAAGTKGKRYALPNSRIMIHQPLGG-AGGQASDIEIQAKEILRLRRRLNEILAKHT 140

Query: 121 GKPKEEIAKDIQRPKYMQAKEAIVYGLADKI 151
           G+P E+I KD  R +YM A+EA  YGL DKI
Sbjct: 141 GQPLEKIEKDTDRDRYMSAEEAKEYGLIDKI 171

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP, although the proteolytic subunit alone does possess some catalytic activity. Active site consists of the triad Ser, His and Asp; some members have lost all of these active site residues and are therefore inactive, while others may have one or two large insertions. ClpP seems to prefer hydrophobic or non-polar residues at P1 or P1' positions in its substrate. The protease exists as a tetradecamer made up of two heptameric rings stacked back-to-back such that the catalytic triad of each subunit is located at the interface between three monomers, thus making oligomerization essential for function. Length = 171

>gnl|CDD|183588 PRK12552, PRK12552, ATP-dependent Clp protease-like protein; Reviewed

 Score =  146 bits (369), Expect = 2e-44
 Identities = 63/155 (40%), Positives = 101/155 (65%), Gaps = 1/155 (0%)

Query: 1   MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQ 60
           ++L+FD+  KPIY YINS+GT     +++G ET+A+AI D M Y K  V+T+  G A G 
Sbjct: 62  LYLEFDDPEKPIYFYINSTGTSWYTGDAIGFETEAFAICDTMRYIKPPVHTICIGQAMGT 121

Query: 61  AAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGT 120
           AAM+LS G KG R   P+++  L+ P  G + G  TD+  +AK++  N  + +E+L++ T
Sbjct: 122 AAMILSAGTKGQRASLPHATIVLHQPRSG-ARGQATDIQIRAKEVLHNKRTMLEILSRNT 180

Query: 121 GKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155
           G+  E+++KD  R  Y+  +EA  YGL D++++S+
Sbjct: 181 GQTVEKLSKDTDRMFYLTPQEAKEYGLIDRVLESR 215

Length = 222

>gnl|CDD|201316 pfam00574, CLP_protease, Clp protease

 Score =  123 bits (311), Expect = 3e-36
 Identities = 54/152 (35%), Positives = 84/152 (55%), Gaps = 10/152 (6%)

Query: 3   LDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAA 62
           L+ ++  K IYLYINS G         G+ T   AI D M + K  V T+  G+A    +
Sbjct: 40  LEAEDPDKDIYLYINSPG---------GSVTAGLAIYDTMQFIKPDVSTICLGLAASMGS 90

Query: 63  MLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGK 122
            +L+ G KG R   PN+   ++ P  G + G  +D+  +A+++    E   E+ A+ TG+
Sbjct: 91  FILAAGTKGKRFALPNARIMIHQPSGG-AQGQASDIEIQAEEILKIRERLNEIYAEHTGQ 149

Query: 123 PKEEIAKDIQRPKYMQAKEAIVYGLADKIIDS 154
           P E+I KD+ R  +M A+EA  YGL D++I+S
Sbjct: 150 PLEKIEKDLDRDTFMSAEEAKEYGLIDEVIES 181

The Clp protease has an active site catalytic triad. In E. coli Clp protease, ser-111, his-136 and asp-185 form the catalytic triad. Cyanophora parodoxa clpP-B has lost all of these active site residues and is therefore inactive. Some members contain one or two large insertions. Length = 182

>gnl|CDD|223811 COG0740, ClpP, Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

 Score =  123 bits (311), Expect = 5e-36
 Identities = 55/156 (35%), Positives = 82/156 (52%), Gaps = 10/156 (6%)

Query: 3   LDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAA 62
           L+ ++  K IYLYINS G         G+ T   AI D M + K  V T+  G A    +
Sbjct: 51  LEAEDPDKDIYLYINSPG---------GSVTAGLAIYDTMQFIKPPVSTICMGQAASMGS 101

Query: 63  MLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGK 122
           +LL  G KG R   PN+   ++    G + G  +D+   A+++    E    + A+ TG+
Sbjct: 102 VLLMAGDKGKRFALPNARIMIH-QPSGGAQGQASDIEIHAREILKIKERLNRIYAEHTGQ 160

Query: 123 PKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDAA 158
             E+I KD  R  +M A+EA  YGL DK+I+S++AA
Sbjct: 161 TLEKIEKDTDRDTWMSAEEAKEYGLIDKVIESREAA 196

Length = 200

>gnl|CDD|178955 PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed

 Score =  108 bits (272), Expect = 3e-30
 Identities = 58/156 (37%), Positives = 83/156 (53%), Gaps = 10/156 (6%)

Query: 3   LDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAA 62
           L+ ++  K IYLYINS G         G+ T   AI D M + K  V T+  G A    A
Sbjct: 55  LEAEDPDKDIYLYINSPG---------GSVTAGLAIYDTMQFIKPDVSTICIGQAASMGA 105

Query: 63  MLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGK 122
            LL+ GAKG R   PNS   ++ P+ G   G  TD+   A+++    +   E+LA+ TG+
Sbjct: 106 FLLAAGAKGKRFALPNSRIMIHQPL-GGFQGQATDIEIHAREILKLKKRLNEILAEHTGQ 164

Query: 123 PKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDAA 158
           P E+I KD  R  +M A+EA  YGL D+++  +  A
Sbjct: 165 PLEKIEKDTDRDNFMSAEEAKEYGLIDEVLTKRKEA 200

Length = 200

>gnl|CDD|237133 PRK12553, PRK12553, ATP-dependent Clp protease proteolytic subunit; Reviewed

 Score =  104 bits (262), Expect = 1e-28
 Identities = 52/155 (33%), Positives = 79/155 (50%), Gaps = 10/155 (6%)

Query: 3   LDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAA 62
           L+  +  + I LYINS G         G+ T   AI D + + +  V TV  G A    A
Sbjct: 59  LESIDPDRDITLYINSPG---------GSVTAGDAIYDTIQFIRPDVQTVCTGQAASAGA 109

Query: 63  MLLSVGAKGYRGLQPNSSTKLYLP-VVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTG 121
           +LL+ G  G R   PN+   ++ P + G   G  +D+  +A+++    E    +LA+ TG
Sbjct: 110 VLLAAGTPGKRFALPNARILIHQPSLGGGIRGQASDLEIQAREILRMRERLERILAEHTG 169

Query: 122 KPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQD 156
           +  E+I KD  R K++ A+EA  YGL D+II S  
Sbjct: 170 QSVEKIRKDTDRDKWLTAEEAKDYGLVDQIITSYR 204

Length = 207

>gnl|CDD|188055 TIGR00493, clpP, ATP-dependent Clp endopeptidase, proteolytic subunit ClpP

 Score =  100 bits (250), Expect = 5e-27
 Identities = 55/152 (36%), Positives = 83/152 (54%), Gaps = 10/152 (6%)

Query: 1   MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQ 60
           ++L+ ++  K IYLYINS G         G+ T   AI D M + K  V T+  G A   
Sbjct: 49  LFLEAEDPEKDIYLYINSPG---------GSITAGLAIYDTMQFIKPDVSTICIGQAASM 99

Query: 61  AAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGT 120
            A LL+ GAKG R   PNS   ++ P+ G + G  TD+  +A ++        ++LA+ T
Sbjct: 100 GAFLLAAGAKGKRFSLPNSRIMIHQPL-GGAQGQATDIEIQANEILRLKGLLNDILAEHT 158

Query: 121 GKPKEEIAKDIQRPKYMQAKEAIVYGLADKII 152
           G+  E+I +D +R  +M A+EA  YGL DK++
Sbjct: 159 GQSLEQIERDTERDFFMSAEEAKEYGLIDKVL 190

This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores at least 370 by This model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model [Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 192

>gnl|CDD|214340 CHL00028, clpP, ATP-dependent Clp protease proteolytic subunit

 Score = 99.5 bits (249), Expect = 1e-26
 Identities = 43/154 (27%), Positives = 78/154 (50%), Gaps = 9/154 (5%)

Query: 1   MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQ 60
           ++L  ++ +K +YL+INS G         G+     AI D M + K  V+T+  G+A   
Sbjct: 52  VYLSIEDDTKDLYLFINSPG---------GSVISGLAIYDTMQFVKPDVHTICLGLAASM 102

Query: 61  AAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGT 120
           A+ +L+ G    R   P++   ++ P      G  ++   +A++L    E+   + A+ T
Sbjct: 103 ASFILAGGEITKRLAFPHARVMIHQPASSFYEGQASEFVLEAEELLKLRETITRVYAQRT 162

Query: 121 GKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDS 154
           GKP   I++D++R  +M A EA  YG+ D +  +
Sbjct: 163 GKPLWVISEDMERDVFMSATEAKAYGIVDLVAVN 196

Length = 200

>gnl|CDD|139060 PRK12551, PRK12551, ATP-dependent Clp protease proteolytic subunit; Reviewed

 Score = 87.6 bits (217), Expect = 3e-22
 Identities = 53/153 (34%), Positives = 79/153 (51%), Gaps = 10/153 (6%)

Query: 1   MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQ 60
           ++L+ ++  K IYLYINS G         G+  D   I D M + K  V+TV  G+A   
Sbjct: 47  LFLEAEDPEKDIYLYINSPG---------GSVYDGLGIFDTMQHVKPDVHTVCVGLAASM 97

Query: 61  AAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGT 120
            A LL  GAKG R    +S   ++ P+ G + G  +D+  +A ++    E     L++ T
Sbjct: 98  GAFLLCAGAKGKRSSLQHSRIMIHQPL-GGARGQASDIRIQADEILFLKERLNTELSERT 156

Query: 121 GKPKEEIAKDIQRPKYMQAKEAIVYGLADKIID 153
           G+P E I +D  R  +M   EA+ YGL D +ID
Sbjct: 157 GQPLERIQEDTDRDFFMSPSEAVEYGLIDLVID 189

Length = 196

>gnl|CDD|132924 cd07013, S14_ClpP, Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

 Score = 79.2 bits (195), Expect = 3e-19
 Identities = 50/151 (33%), Positives = 76/151 (50%), Gaps = 10/151 (6%)

Query: 1   MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQ 60
           ++L   N  K IYLYINS G         G      AI D + + K+ V T+  G+A   
Sbjct: 22  LFLGAVNPEKDIYLYINSPG---------GDVFAGMAIYDTIKFIKADVVTIIDGLAASM 72

Query: 61  AAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGT 120
            +++   GAKG R + PN+   ++ P  G + G  TDM   A  L     + +   A  T
Sbjct: 73  GSVIAMAGAKGKRFILPNAMMMIHQPW-GGTLGDATDMRIYADLLLKVEGNLVSAYAHKT 131

Query: 121 GKPKEEIAKDIQRPKYMQAKEAIVYGLADKI 151
           G+ +EE+  D++R  ++ A+EA+ YG AD I
Sbjct: 132 GQSEEELHADLERDTWLSAREAVEYGFADTI 162

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP, although the proteolytic subunit alone does possess some catalytic activity. Active site consists of the triad Ser, His and Asp; some members have lost all of these active site residues and are therefore inactive, while others may have one or two large insertions. ClpP seems to prefer hydrophobic or non-polar residues at P1 or P1' positions in its substrate. The protease exists as a tetradecamer made up of two heptameric rings stacked back-to-back such that the catalytic triad of each subunit is located at the interface between three monomers, thus making oligomerization essential for function. Length = 162

>gnl|CDD|237742 PRK14513, PRK14513, ATP-dependent Clp protease proteolytic subunit; Provisional

 Score = 77.7 bits (191), Expect = 3e-18
 Identities = 47/152 (30%), Positives = 76/152 (50%), Gaps = 12/152 (7%)

Query: 3   LDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAA 62
           LD  N  + I +YIN  G         G      AI D M Y K+ V T+  G+A    +
Sbjct: 51  LDSQNPEQEIQMYINCPG---------GEVYAGLAIYDTMRYIKAPVSTICVGIAMSMGS 101

Query: 63  MLLSVGAKGYRGLQPNSSTKLYLPVVG-RSSGPVTDMWRKAKDLEANAESYIELLAKGTG 121
           +LL  G KG R   PNS   ++    G R + P  D+  +AK++    ++ +++  + T 
Sbjct: 102 VLLMAGDKGKRMALPNSRIMIHQGSAGFRGNTP--DLEVQAKEVLFLRDTLVDIYHRHTD 159

Query: 122 KPKEEIAKDIQRPKYMQAKEAIVYGLADKIID 153
            P E++ +D++R  +M  +EA  YGL D +I+
Sbjct: 160 LPHEKLLRDMERDYFMSPEEAKAYGLIDSVIE 191

Length = 201

>gnl|CDD|184722 PRK14514, PRK14514, ATP-dependent Clp protease proteolytic subunit; Provisional

 Score = 76.1 bits (187), Expect = 1e-17
 Identities = 45/152 (29%), Positives = 78/152 (51%), Gaps = 10/152 (6%)

Query: 1   MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQ 60
           ++LD  +  K I +YINS G         G+      I D M +  S V T+  GMA   
Sbjct: 76  LYLDSVDPGKDISIYINSPG---------GSVYAGLGIYDTMQFISSDVATICTGMAASM 126

Query: 61  AAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGT 120
           A++LL  G KG R   P+S   ++ P +G + G  +D+   A++++   +    ++A  +
Sbjct: 127 ASVLLVAGTKGKRSALPHSRVMIHQP-LGGAQGQASDIEITAREIQKLKKELYTIIADHS 185

Query: 121 GKPKEEIAKDIQRPKYMQAKEAIVYGLADKII 152
           G P +++  D  R  +M A+EA  YG+ D+++
Sbjct: 186 GTPFDKVWADSDRDYWMTAQEAKEYGMIDEVL 217

Length = 221

>gnl|CDD|237741 PRK14512, PRK14512, ATP-dependent Clp protease proteolytic subunit; Provisional

 Score = 71.7 bits (176), Expect = 3e-16
 Identities = 42/155 (27%), Positives = 80/155 (51%), Gaps = 12/155 (7%)

Query: 3   LDFDNASKPIYLYINSSGTQNEKKESVGAETDA-YAIADAMAYCKSKVYTVNCGMAYGQA 61
           L+  ++ KPI++YI+S G           + DA +AI + + + K KV+T+  G+    A
Sbjct: 47  LEALDSKKPIFVYIDSEG----------GDIDAGFAIFNMIRFVKPKVFTIGVGLVASAA 96

Query: 62  AMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTG 121
           A++     K  R   PN+   L+ P+ G   G  TD+   A +L        +++AK TG
Sbjct: 97  ALIFLAAKKESRFSLPNARYLLHQPLSG-FKGVATDIEIYANELNKVKSELNDIIAKETG 155

Query: 122 KPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQD 156
           +  +++ KD  R  ++ +  A+ YGL  ++++++ 
Sbjct: 156 QELDKVEKDTDRDFWLDSSSAVKYGLVFEVVETRL 190

Length = 197

>gnl|CDD|132923 cd00394, Clp_protease_like, Caseinolytic protease (ClpP) is an ATP-dependent protease

 Score = 58.2 bits (141), Expect = 3e-11
 Identities = 33/150 (22%), Positives = 60/150 (40%), Gaps = 12/150 (8%)

Query: 3   LDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAA 62
            + DN+ K I L +N+ G         G       I DA+   +  V     G A     
Sbjct: 23  AEADNSVKAIVLEVNTPG---------GRVDAGMNIVDALQASRKPVIAYVGGQAASAGY 73

Query: 63  MLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGP-VTDMWRKAKDLEANAESYIELLAKGTG 121
            + +   K    + P +    + P+ G       T      + +      +I L+A+  G
Sbjct: 74  YIATAANK--IVMAPGTRVGSHGPIGGYGGNGNPTAQEADQRIILYFIARFISLVAENRG 131

Query: 122 KPKEEIAKDIQRPKYMQAKEAIVYGLADKI 151
           +  E++ +DI++   + A+EA+ YGL D +
Sbjct: 132 QTTEKLEEDIEKDLVLTAQEALEYGLVDAL 161

Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradecamer made up of two heptameric rings stacked back-to-back such that the catalytic triad of each subunit is located at the interface between three monomers, thus making oligomerization essential for function. Another family included in this class of enzymes is the signal peptide peptidase A (SppA; S49) which is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Mutagenesis studies suggest that the catalytic center of SppA comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-terminal domain. Others, including sohB peptidase, protein C, protein 1510-N and archaeal signal peptide peptidase, do not contain the amino-terminal domain. The third family included in this hierarchy is nodulation formation efficiency D (NfeD) which is a membrane-bound Clp-class protease and only found in bacteria and archaea. Majority of the NfeD genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named stomatin operon partner protein (STOPP). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 from Pyrococcus horikoshii has been shown to possess serine protease activity having a Ser-Lys catalytic dyad. Length = 161

>gnl|CDD|132927 cd07016, S14_ClpP_1, Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

 Score = 54.1 bits (131), Expect = 9e-10
 Identities = 41/149 (27%), Positives = 67/149 (44%), Gaps = 12/149 (8%)

Query: 3   LDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAA 62
           LD       I + INS G         G      AI +A+   K KV     G+A   A+
Sbjct: 24  LDALGDDSDITVRINSPG---------GDVFAGLAIYNALKRHKGKVTVKIDGLAASAAS 74

Query: 63  MLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGK 122
           ++   G +    + PN+   ++ P  G ++G   D+ + A  L+   ES     A+ TG 
Sbjct: 75  VIAMAGDE--VEMPPNAMLMIHNPSTG-AAGNADDLRKAADLLDKIDESIANAYAEKTGL 131

Query: 123 PKEEIAKDIQRPKYMQAKEAIVYGLADKI 151
            +EEI+  +    ++ A+EA+  G AD+I
Sbjct: 132 SEEEISALMDAETWLTAQEAVELGFADEI 160

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP, although the proteolytic subunit alone does possess some catalytic activity. Active site consists of the triad Ser, His and Asp; some members have lost all of these active site residues and are therefore inactive, while others may have one or two large insertions. ClpP seems to prefer hydrophobic or non-polar residues at P1 or P1' positions in its substrate. The protease exists as a tetradecamer made up of two heptameric rings stacked back-to-back such that the catalytic triad of each subunit is located at the interface between three monomers, thus making oligomerization essential for function. Length = 160

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	167
COG0740	200	ClpP Protease subunit of ATP-dependent Clp proteas	100.0
PRK12552	222	ATP-dependent Clp protease-like protein; Reviewed	100.0
PRK14513	201	ATP-dependent Clp protease proteolytic subunit; Pr	100.0
KOG0840	275	consensus ATP-dependent Clp protease, proteolytic	100.0
PRK14514	221	ATP-dependent Clp protease proteolytic subunit; Pr	100.0
PRK12551	196	ATP-dependent Clp protease proteolytic subunit; Re	100.0
CHL00028	200	clpP ATP-dependent Clp protease proteolytic subuni	100.0
PRK14512	197	ATP-dependent Clp protease proteolytic subunit; Pr	100.0
TIGR00493	191	clpP ATP-dependent Clp protease, proteolytic subun	100.0
PRK00277	200	clpP ATP-dependent Clp protease proteolytic subuni	100.0
PRK12553	207	ATP-dependent Clp protease proteolytic subunit; Re	100.0
cd07013	162	S14_ClpP Caseinolytic protease (ClpP) is an ATP-de	100.0
PF00574	182	CLP_protease: Clp protease; InterPro: IPR001907 In	100.0
cd07017	171	S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-	100.0
cd07016	160	S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-	100.0
cd07015	172	Clp_protease_NfeD Nodulation formation efficiency	99.97
cd00394	161	Clp_protease_like Caseinolytic protease (ClpP) is	99.95
cd07020	187	Clp_protease_NfeD_1 Nodulation formation efficienc	99.94
cd07021	178	Clp_protease_NfeD_like Nodulation formation effici	99.92
cd07014	177	S49_SppA Signal peptide peptidase A. Signal peptid	99.75
TIGR00706	207	SppA_dom signal peptide peptidase SppA, 36K type.	99.72
cd07023	208	S49_Sppa_N_C Signal peptide peptidase A (SppA), a	99.69
cd07022	214	S49_Sppa_36K_type Signal peptide peptidase A (SppA	99.65
TIGR00705	584	SppA_67K signal peptide peptidase SppA, 67K type.	99.63
COG0616	317	SppA Periplasmic serine proteases (ClpP class) [Po	99.62
cd07019	211	S49_SppA_1 Signal peptide peptidase A (SppA), a se	99.61
cd07018	222	S49_SppA_67K_type Signal peptide peptidase A (SppA	99.51
COG1030	436	NfeD Membrane-bound serine protease (ClpP class) [	99.49
PRK10949	618	protease 4; Provisional	99.41
PRK11778	330	putative inner membrane peptidase; Provisional	99.4
PF01972	285	SDH_sah: Serine dehydrogenase proteinase; InterPro	99.38
PF01343	154	Peptidase_S49: Peptidase family S49 peptidase clas	99.11
TIGR00705	584	SppA_67K signal peptide peptidase SppA, 67K type.	98.78
cd06558	195	crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hy	98.66
PRK10949	618	protease 4; Provisional	98.55
PRK05869	222	enoyl-CoA hydratase; Validated	98.44
COG3904	245	Predicted periplasmic protein [Function unknown]	98.43
PRK08258	277	enoyl-CoA hydratase; Provisional	98.41
PRK06213	229	enoyl-CoA hydratase; Provisional	98.32
PRK06142	272	enoyl-CoA hydratase; Provisional	98.3
PF00378	245	ECH: Enoyl-CoA hydratase/isomerase family; InterPr	98.3
PRK06210	272	enoyl-CoA hydratase; Provisional	98.29
PRK09674	255	enoyl-CoA hydratase-isomerase; Provisional	98.26
PRK06495	257	enoyl-CoA hydratase; Provisional	98.26
PRK03580	261	carnitinyl-CoA dehydratase; Provisional	98.25
PRK08150	255	enoyl-CoA hydratase; Provisional	98.24
PRK07110	249	polyketide biosynthesis enoyl-CoA hydratase; Valid	98.24
PRK06688	259	enoyl-CoA hydratase; Provisional	98.24
PLN02664	275	enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA	98.23
COG1024	257	CaiD Enoyl-CoA hydratase/carnithine racemase [Lipi	98.23
PRK06144	262	enoyl-CoA hydratase; Provisional	98.21
PRK05981	266	enoyl-CoA hydratase; Provisional	98.21
PLN02888	265	enoyl-CoA hydratase	98.2
PRK09245	266	enoyl-CoA hydratase; Provisional	98.2
PRK06190	258	enoyl-CoA hydratase; Provisional	98.2
PRK06143	256	enoyl-CoA hydratase; Provisional	98.2
PRK07511	260	enoyl-CoA hydratase; Provisional	98.19
PRK08139	266	enoyl-CoA hydratase; Validated	98.19
PRK06127	269	enoyl-CoA hydratase; Provisional	98.19
PRK11423	261	methylmalonyl-CoA decarboxylase; Provisional	98.18
PRK05980	260	enoyl-CoA hydratase; Provisional	98.18
TIGR02280	256	PaaB1 phenylacetate degradation probable enoyl-CoA	98.18
PRK06494	259	enoyl-CoA hydratase; Provisional	98.18
PRK06023	251	enoyl-CoA hydratase; Provisional	98.16
PRK05862	257	enoyl-CoA hydratase; Provisional	98.16
PRK09076	258	enoyl-CoA hydratase; Provisional	98.16
PRK07396	273	dihydroxynaphthoic acid synthetase; Validated	98.16
PRK07112	255	polyketide biosynthesis enoyl-CoA hydratase; Valid	98.14
PRK07938	249	enoyl-CoA hydratase; Provisional	98.14
PRK08138	261	enoyl-CoA hydratase; Provisional	98.14
PRK08260	296	enoyl-CoA hydratase; Provisional	98.13
PLN02921	327	naphthoate synthase	98.13
PRK09120	275	p-hydroxycinnamoyl CoA hydratase/lyase; Validated	98.12
PLN03214	278	probable enoyl-CoA hydratase/isomerase; Provisiona	98.12
PRK06563	255	enoyl-CoA hydratase; Provisional	98.12
PRK05995	262	enoyl-CoA hydratase; Provisional	98.12
PRK07657	260	enoyl-CoA hydratase; Provisional	98.12
PRK05809	260	3-hydroxybutyryl-CoA dehydratase; Validated	98.11
TIGR01929	259	menB naphthoate synthase (dihydroxynaphthoic acid	98.1
PLN02267	239	enoyl-CoA hydratase/isomerase family protein	98.09
PRK07509	262	enoyl-CoA hydratase; Provisional	98.09
PRK12319	256	acetyl-CoA carboxylase subunit alpha; Provisional	98.09
PRK07658	257	enoyl-CoA hydratase; Provisional	98.09
PLN03230	431	acetyl-coenzyme A carboxylase carboxyl transferase	98.08
PRK07468	262	enoyl-CoA hydratase; Provisional	98.08
PRK08140	262	enoyl-CoA hydratase; Provisional	98.07
TIGR00513	316	accA acetyl-CoA carboxylase, carboxyl transferase,	98.07
TIGR03210	256	badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Memb	98.06
PRK08290	288	enoyl-CoA hydratase; Provisional	98.05
PRK07327	268	enoyl-CoA hydratase; Provisional	98.05
PRK05864	276	enoyl-CoA hydratase; Provisional	98.04
PRK05724	319	acetyl-CoA carboxylase carboxyltransferase subunit	98.04
PRK07260	255	enoyl-CoA hydratase; Provisional	98.03
PRK07854	243	enoyl-CoA hydratase; Provisional	98.02
PRK07659	260	enoyl-CoA hydratase; Provisional	98.02
CHL00198	322	accA acetyl-CoA carboxylase carboxyltransferase al	98.0
TIGR03134	238	malonate_gamma malonate decarboxylase, gamma subun	98.0
PRK06072	248	enoyl-CoA hydratase; Provisional	97.99
PRK12478	298	enoyl-CoA hydratase; Provisional	97.99
PRK08788	287	enoyl-CoA hydratase; Validated	97.98
PRK05870	249	enoyl-CoA hydratase; Provisional	97.97
PRK08272	302	enoyl-CoA hydratase; Provisional	97.97
TIGR03189	251	dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hy	97.96
PLN02600	251	enoyl-CoA hydratase	97.96
PRK08321	302	naphthoate synthase; Validated	97.92
TIGR03200	360	dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hy	97.92
PRK05674	265	gamma-carboxygeranoyl-CoA hydratase; Validated	97.92
PRK07799	263	enoyl-CoA hydratase; Provisional	97.9
KOG1680	290	consensus Enoyl-CoA hydratase [Lipid transport and	97.87
PRK07827	260	enoyl-CoA hydratase; Provisional	97.83
PLN03229	762	acetyl-coenzyme A carboxylase carboxyl transferase	97.82
PRK08184	550	benzoyl-CoA-dihydrodiol lyase; Provisional	97.79
PRK08259	254	enoyl-CoA hydratase; Provisional	97.78
PRK08252	254	enoyl-CoA hydratase; Provisional	97.67
PRK11730	715	fadB multifunctional fatty acid oxidation complex	97.62
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	97.61
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	97.61
PRK05617	342	3-hydroxyisobutyryl-CoA hydrolase; Provisional	97.56
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	97.56
PLN02874	379	3-hydroxyisobutyryl-CoA hydrolase-like protein	97.53
TIGR03222	546	benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the p	97.47
PLN02157	401	3-hydroxyisobutyryl-CoA hydrolase-like protein	97.42
TIGR03222	546	benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the p	97.41
PLN02820	569	3-methylcrotonyl-CoA carboxylase, beta chain	97.37
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	97.33
KOG1681	292	consensus Enoyl-CoA isomerase [Lipid transport and	97.3
PLN02988	381	3-hydroxyisobutyryl-CoA hydrolase	97.27
TIGR01117	512	mmdA methylmalonyl-CoA decarboxylase alpha subunit	97.22
COG0825	317	AccA Acetyl-CoA carboxylase alpha subunit [Lipid m	97.14
PLN02851	407	3-hydroxyisobutyryl-CoA hydrolase-like protein	97.1
PRK08184	550	benzoyl-CoA-dihydrodiol lyase; Provisional	97.01
PF01039	493	Carboxyl_trans: Carboxyl transferase domain; Inter	96.75
PRK05654	292	acetyl-CoA carboxylase subunit beta; Validated	95.67
TIGR00515	285	accD acetyl-CoA carboxylase, carboxyl transferase,	95.42
PF06833	234	MdcE: Malonate decarboxylase gamma subunit (MdcE);	95.23
KOG1682	287	consensus Enoyl-CoA isomerase [Lipid transport and	94.73
COG4799	526	Acetyl-CoA carboxylase, carboxyltransferase compon	94.24
COG0447	282	MenB Dihydroxynaphthoic acid synthase [Coenzyme me	93.57
TIGR03133	274	malonate_beta malonate decarboxylase, beta subunit	92.67
PRK07189	301	malonate decarboxylase subunit beta; Reviewed	92.17
KOG1679	291	consensus Enoyl-CoA hydratase [Lipid transport and	91.17
KOG0016	266	consensus Enoyl-CoA hydratase/isomerase [Lipid tra	89.45

>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=100.00  E-value=1.6e-52  Score=331.40  Aligned_cols=147  Identities=37%  Similarity=0.565  Sum_probs=143.9

Q ss_pred             CCcCCCCCCCCeEEEEcCCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCc
Q 031001            1 MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSS   80 (167)
Q Consensus         1 ~~L~~~~~~~~I~l~INS~G~~~~~~~~~G~v~~g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~   80 (167)
                      |||+.++|.++|+|||||||         |+|++|++|||+||++++||+|+|.|+|||||++|+++|++++|+++|||+
T Consensus        49 l~Lea~~~~k~I~lyINSpG---------G~V~aG~AIydtm~~ik~~V~ti~~G~AaSmgs~l~~aG~~g~r~~lPnsr  119 (200)
T COG0740          49 LFLEAEDPDKDIYLYINSPG---------GSVTAGLAIYDTMQFIKPPVSTICMGQAASMGSVLLMAGDKGKRFALPNAR  119 (200)
T ss_pred             HHHHhcCCCCCeEEEEeCCC---------cccchhHHHHHHHHhcCCCeEEEEecHHHhHHHHHHhcCCCCCceeCCCce
Confidence            58999999999999999999         999999999999999999999999999999999999999999999999999


Q ss_pred             eeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCchH
Q 031001           81 TKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDA  157 (167)
Q Consensus        81 ~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~~~  157 (167)
                      +|||||+ +++.|+++|++++++++.++++.+.++|+++||++++++.++|+||+||||+||++|||||+|++..++
T Consensus       120 imIHqP~-gg~~G~a~Di~i~A~ei~~~~~~l~~i~a~~TGq~~e~i~~d~drd~~msa~eA~~yGLiD~V~~~~~~  195 (200)
T COG0740         120 IMIHQPS-GGAQGQASDIEIHAREILKIKERLNRIYAEHTGQTLEKIEKDTDRDTWMSAEEAKEYGLIDKVIESREA  195 (200)
T ss_pred             EEEecCC-ccCccCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHhhcccccCCHHHHHHcCCcceecccccc
Confidence            9999999 899999999999999999999999999999999999999999999999999999999999999988754

>PRK12552 ATP-dependent Clp protease-like protein; Reviewed

Probab=100.00  E-value=1.6e-51  Score=331.48  Aligned_cols=155  Identities=40%  Similarity=0.679  Sum_probs=150.6

Q ss_pred             CCcCCCCCCCCeEEEEcCCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCc
Q 031001            1 MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSS   80 (167)
Q Consensus         1 ~~L~~~~~~~~I~l~INS~G~~~~~~~~~G~v~~g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~   80 (167)
                      |||+.+++.++|+||||||||++.+++.+|.+++|++|||+|++++++|+|+|+|+|+|+|++|+++|++++|+++|||+
T Consensus        62 l~L~~~~~~k~I~lyINSpGGsv~~G~~iG~v~~glaIyD~m~~ik~~V~Tv~~G~AaS~AslIl~aG~kg~R~alpns~  141 (222)
T PRK12552         62 LYLEFDDPEKPIYFYINSTGTSWYTGDAIGFETEAFAICDTMRYIKPPVHTICIGQAMGTAAMILSAGTKGQRASLPHAT  141 (222)
T ss_pred             HHHhccCCCCCEEEEEeCCCCCccccccccccccHHHHHHHHHhcCCCeEEEEEeehhhHHHHHHhCCCCCceecCCCcE
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCch
Q 031001           81 TKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQD  156 (167)
Q Consensus        81 ~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~~  156 (167)
                      +|||||+ ++..|++.|+++++++|.++++.+.++|+++||++.++|.++|+||+||||+||++|||||+|+++..
T Consensus       142 iMIHqP~-~~~~G~A~di~~~a~el~~~r~~l~~iya~~TG~~~e~I~~d~~rd~wmsA~EA~eyGliD~Ii~~~~  216 (222)
T PRK12552        142 IVLHQPR-SGARGQATDIQIRAKEVLHNKRTMLEILSRNTGQTVEKLSKDTDRMFYLTPQEAKEYGLIDRVLESRK  216 (222)
T ss_pred             EEeccCC-cccccCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHhcCCCcCCHHHHHHcCCCcEEeccCC
Confidence            9999998 77899999999999999999999999999999999999999999999999999999999999998754

>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional

Probab=100.00  E-value=1.2e-49  Score=317.20  Aligned_cols=146  Identities=31%  Similarity=0.481  Sum_probs=142.0

Q ss_pred             CCcCCCCCCCCeEEEEcCCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCc
Q 031001            1 MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSS   80 (167)
Q Consensus         1 ~~L~~~~~~~~I~l~INS~G~~~~~~~~~G~v~~g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~   80 (167)
                      |||+++++.++|+|||||||         |+|++|++|||+|+++++||+|+|+|+|+|||++|+++|++++|+++|||+
T Consensus        49 l~L~~~~~~~~I~l~INSpG---------G~v~~GlaIyd~m~~~~~~V~Ti~~G~AaS~As~il~aG~kgkR~~~pna~  119 (201)
T PRK14513         49 LLLDSQNPEQEIQMYINCPG---------GEVYAGLAIYDTMRYIKAPVSTICVGIAMSMGSVLLMAGDKGKRMALPNSR  119 (201)
T ss_pred             HHhhccCCCCCEEEEEECCC---------CchhhHHHHHHHHHhcCCCEEEEEEeeehhhHHHHHhcCCCCcEEecCCeE
Confidence            58999999999999999999         999999999999999999999999999999999999999999999999999


Q ss_pred             eeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCch
Q 031001           81 TKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQD  156 (167)
Q Consensus        81 ~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~~  156 (167)
                      +|||||+ ++..|++.|+++++++|++.++.+.++|+++||++.++|.++|+||+||||+||++|||||+|+++.+
T Consensus       120 iMIHqp~-~~~~G~a~di~~~a~el~~~~~~l~~iya~~Tg~~~~~I~~~~~rd~~msa~EA~eyGliD~I~~~~~  194 (201)
T PRK14513        120 IMIHQGS-AGFRGNTPDLEVQAKEVLFLRDTLVDIYHRHTDLPHEKLLRDMERDYFMSPEEAKAYGLIDSVIEPTR  194 (201)
T ss_pred             EEEecCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhccCcccCHHHHHHcCCCcEEeccCC
Confidence            9999998 67899999999999999999999999999999999999999999999999999999999999998754

>KOG0840 consensus ATP-dependent Clp protease, proteolytic subunit [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5.3e-50  Score=324.09  Aligned_cols=144  Identities=47%  Similarity=0.678  Sum_probs=141.9

Q ss_pred             CCcCCCCCCCCeEEEEcCCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCc
Q 031001            1 MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSS   80 (167)
Q Consensus         1 ~~L~~~~~~~~I~l~INS~G~~~~~~~~~G~v~~g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~   80 (167)
                      |||+.+|++|||++||||||         |++++|+||||+|+++++||.|+|+|+|+|+|++||++|.|++|+++|||+
T Consensus       114 L~Ld~ed~~K~I~lyINSPG---------G~vtaglAIYDtMq~ik~~V~Tic~G~Aas~aalLLaaG~KG~R~alPnsr  184 (275)
T KOG0840|consen  114 LYLDSEDPKKPIYLYINSPG---------GSVTAGLAIYDTMQYIKPDVSTICVGLAASMAALLLAAGAKGKRYALPNSR  184 (275)
T ss_pred             HHhhccCCCCCeEEEEeCCC---------CccchhhhHHHHHHhhCCCceeeehhhHHhHHHHHHhcCCCcceeecCCce
Confidence            69999999999999999999         999999999999999999999999999999999999999999999999999


Q ss_pred             eeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCC
Q 031001           81 TKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDS  154 (167)
Q Consensus        81 ~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~  154 (167)
                      +|||||. +++.|++.|+.++++|+.+.++.+.++|+++||+|.|+|.++|+||+||+|+||+||||||+|++.
T Consensus       185 iMIhQP~-gga~Gqa~Di~i~akE~~~~k~~l~~i~a~~Tgq~~e~i~~d~dRd~fmsa~EA~eyGliD~v~~~  257 (275)
T KOG0840|consen  185 IMIHQPS-GGAGGQATDIVIQAKELMRIKEYLNEIYAKHTGQPLEVIEKDMDRDRFMSAEEAKEYGLIDKVIDH  257 (275)
T ss_pred             eEEeccC-CCcCccchHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHhhhcccccCCHHHHHHhcchhhhhcC
Confidence            9999999 789999999999999999999999999999999999999999999999999999999999999985

>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional

Probab=100.00  E-value=6.8e-49  Score=316.51  Aligned_cols=145  Identities=31%  Similarity=0.513  Sum_probs=141.4

Q ss_pred             CCcCCCCCCCCeEEEEcCCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCc
Q 031001            1 MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSS   80 (167)
Q Consensus         1 ~~L~~~~~~~~I~l~INS~G~~~~~~~~~G~v~~g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~   80 (167)
                      |||+.++++++|+|||||||         |+|++|++|||+|+++++||+|+|.|+|||||++|+++|++++|+++|||+
T Consensus        76 l~L~~~~~~~~I~lyINSpG---------Gsv~aGlaIyd~m~~~~~~V~tv~~G~AAS~AslIl~aG~~gkR~~~pna~  146 (221)
T PRK14514         76 LYLDSVDPGKDISIYINSPG---------GSVYAGLGIYDTMQFISSDVATICTGMAASMASVLLVAGTKGKRSALPHSR  146 (221)
T ss_pred             HHHhccCCCCCEEEEEECCC---------cchhhHHHHHHHHHhcCCCEEEEEEEEehhHHHHHHhcCCCCceeeCCCCE
Confidence            58999999999999999999         999999999999999999999999999999999999999999999999999


Q ss_pred             eeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001           81 TKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ  155 (167)
Q Consensus        81 ~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~  155 (167)
                      +|+|||+ ++..|+++|++++++++.++++.+.++|+++||++.++|.++|++|+||||+||++|||||+|++.+
T Consensus       147 iMiHqP~-~~~~G~a~di~i~a~el~~~~~~i~~iya~~TG~~~e~I~~~~~rd~wmtA~EA~eyGliD~Vi~~~  220 (221)
T PRK14514        147 VMIHQPL-GGAQGQASDIEITAREIQKLKKELYTIIADHSGTPFDKVWADSDRDYWMTAQEAKEYGMIDEVLIKK  220 (221)
T ss_pred             EEeccCC-cccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhcCccCCHHHHHHcCCccEEeecC
Confidence            9999998 7789999999999999999999999999999999999999999999999999999999999999754

>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed

Probab=100.00  E-value=2.5e-48  Score=308.68  Aligned_cols=145  Identities=37%  Similarity=0.553  Sum_probs=141.4

Q ss_pred             CCcCCCCCCCCeEEEEcCCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCc
Q 031001            1 MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSS   80 (167)
Q Consensus         1 ~~L~~~~~~~~I~l~INS~G~~~~~~~~~G~v~~g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~   80 (167)
                      +||+.+++.++|+|||||||         |+|++|++|||+|+++++||+|+|.|+|+|+|++|+++|++++|+++|||+
T Consensus        47 l~l~~~~~~~~I~l~INSpG---------G~v~~g~aIyd~m~~~~~~V~t~~~G~AaS~AslIl~aG~~~~R~~~p~a~  117 (196)
T PRK12551         47 LFLEAEDPEKDIYLYINSPG---------GSVYDGLGIFDTMQHVKPDVHTVCVGLAASMGAFLLCAGAKGKRSSLQHSR  117 (196)
T ss_pred             HHhhccCCCCCEEEEEeCCC---------cchhhHHHHHHHHHhcCCCEEEEEEEEehhHHHHHHhCCCCCceecCCCCE
Confidence            58999999999999999999         999999999999999999999999999999999999999999999999999


Q ss_pred             eeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001           81 TKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ  155 (167)
Q Consensus        81 ~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~  155 (167)
                      +|+|||+ ++..|+++|+++++++|+++++.+.++|+++||++.++|.++|++|+||||+||++|||||+|+++.
T Consensus       118 iMIHqP~-~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~tG~~~~~i~~~~~rd~~msa~EA~eyGliD~I~~~~  191 (196)
T PRK12551        118 IMIHQPL-GGARGQASDIRIQADEILFLKERLNTELSERTGQPLERIQEDTDRDFFMSPSEAVEYGLIDLVIDKR  191 (196)
T ss_pred             EEEecCC-cccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhcCcCCCHHHHHHcCCCcEEeccC
Confidence            9999998 7789999999999999999999999999999999999999999999999999999999999999864

>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit

Probab=100.00  E-value=2.6e-48  Score=309.56  Aligned_cols=146  Identities=29%  Similarity=0.478  Sum_probs=141.7

Q ss_pred             CCcCCCCCCCCeEEEEcCCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCc
Q 031001            1 MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSS   80 (167)
Q Consensus         1 ~~L~~~~~~~~I~l~INS~G~~~~~~~~~G~v~~g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~   80 (167)
                      |||+.+++.++|+|||||||         |++++|++|||+|++++.||+|+|.|+|+|+|++|+++|++++|+++|||+
T Consensus        52 l~L~~~~~~~~I~l~INSpG---------G~v~~g~aIyd~m~~~~~~V~Tv~~G~AaS~aslIl~aG~kg~R~~~p~s~  122 (200)
T CHL00028         52 VYLSIEDDTKDLYLFINSPG---------GSVISGLAIYDTMQFVKPDVHTICLGLAASMASFILAGGEITKRLAFPHAR  122 (200)
T ss_pred             HHHhccCCCCCEEEEEeCCC---------cchhhHHHHHHHHHhcCCCEEEEEEEehHHHHHHHHhCCCCCCEEecCCCe
Confidence            58999999999999999999         999999999999999999999999999999999999999999999999999


Q ss_pred             eeeecccccC-CcCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCch
Q 031001           81 TKLYLPVVGR-SSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQD  156 (167)
Q Consensus        81 ~miH~p~~~~-~~G~~~dl~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~~  156 (167)
                      +|+|||+ ++ ..|+++|+++++++|+++++.+.++|+++||++.++|.++|++|+||||+||++|||||+|+++..
T Consensus       123 imiHqp~-~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~Tg~~~e~i~~~~~r~~~lta~EA~eyGliD~I~~~~~  198 (200)
T CHL00028        123 VMIHQPA-SSFYEGQASEFVLEAEELLKLRETITRVYAQRTGKPLWVISEDMERDVFMSATEAKAYGIVDLVAVNNE  198 (200)
T ss_pred             EEEecCc-cCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhcCccCCHHHHHHcCCCcEEeecCc
Confidence            9999998 55 889999999999999999999999999999999999999999999999999999999999998754

>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional

Probab=100.00  E-value=1.4e-45  Score=293.34  Aligned_cols=152  Identities=27%  Similarity=0.441  Sum_probs=145.4

Q ss_pred             CCcCCCCCCCCeEEEEcCCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCc
Q 031001            1 MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSS   80 (167)
Q Consensus         1 ~~L~~~~~~~~I~l~INS~G~~~~~~~~~G~v~~g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~   80 (167)
                      +||+.+++.++|+|+|||||         |+|++|++|||+|++++.||+|+|.|.|+|||++|+++|++++|+++|||+
T Consensus        45 ~~l~~~~~~~~I~l~INSpG---------G~v~ag~aI~d~i~~~~~~V~t~v~G~AaSaaslIl~ag~~~~R~~~p~s~  115 (197)
T PRK14512         45 LLLEALDSKKPIFVYIDSEG---------GDIDAGFAIFNMIRFVKPKVFTIGVGLVASAAALIFLAAKKESRFSLPNAR  115 (197)
T ss_pred             HHHHhcCCCCCEEEEEECCC---------CCHHHHHHHHHHHHhCCCCEEEEEEeeeHhHHHHHHhcCCcCceeECCCCc
Confidence            36778788899999999999         999999999999999999999999999999999999999999999999999


Q ss_pred             eeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCchHHHh
Q 031001           81 TKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDAAYE  160 (167)
Q Consensus        81 ~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~~~~~~  160 (167)
                      +|+|||+ +...|++.|++..++++++.++.+.++|+++||++.++++++|++|+||||+||++|||||+|+++..++.+
T Consensus       116 imiHqP~-~~~~G~a~di~~~a~~l~~~~~~i~~~~a~~tg~~~~~i~~~~~~d~~lta~EA~~yGliD~I~~~~~~l~~  194 (197)
T PRK14512        116 YLLHQPL-SGFKGVATDIEIYANELNKVKSELNDIIAKETGQELDKVEKDTDRDFWLDSSSAVKYGLVFEVVETRLELEE  194 (197)
T ss_pred             EEEEcCc-cccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHhhhcCcccCHHHHHHcCCccEeecCcHHhHh
Confidence            9999998 778899999999999999999999999999999999999999999999999999999999999999888876


Q ss_pred             hh
Q 031001          161 KR  162 (167)
Q Consensus       161 ~~  162 (167)
                      ..
T Consensus       195 ~~  196 (197)
T PRK14512        195 FI  196 (197)
T ss_pred             hc
Confidence            53

>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP

Probab=100.00  E-value=1.8e-44  Score=285.70  Aligned_cols=143  Identities=38%  Similarity=0.562  Sum_probs=138.5

Q ss_pred             CCcCCCCCCCCeEEEEcCCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCc
Q 031001            1 MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSS   80 (167)
Q Consensus         1 ~~L~~~~~~~~I~l~INS~G~~~~~~~~~G~v~~g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~   80 (167)
                      +||+.+++.++|+|+|||||         |++++|++|||+|++++.||+|+|.|+|+|+|++|+++|++++|++.|||+
T Consensus        48 ~~l~~~~~~~~i~l~InSpG---------G~v~~g~~I~d~l~~~~~~v~t~~~G~AaSaaslI~~aG~~~~r~~~p~s~  118 (191)
T TIGR00493        48 LFLEAEDPEKDIYLYINSPG---------GSITAGLAIYDTMQFIKPDVSTICIGQAASMGAFLLSAGAKGKRFSLPNSR  118 (191)
T ss_pred             HHhhccCCCCCEEEEEECCC---------CCHHHHHHHHHHHHhcCCCEEEEEEEeeccHHHHHHhcCCCCcEEecCCce
Confidence            47888899999999999999         999999999999999999999999999999999999999999999999999


Q ss_pred             eeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeC
Q 031001           81 TKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIID  153 (167)
Q Consensus        81 ~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~  153 (167)
                      +|+|||+ ++..|++.|+++.+++++++++.+.++|+++||++.++++++|++|+||||+||++|||||+|++
T Consensus       119 imiH~p~-~~~~G~a~d~~~~a~~l~~~~~~~~~~ya~~tg~~~~~i~~~~~~~~~lta~EA~~~GliD~ii~  190 (191)
T TIGR00493       119 IMIHQPL-GGAQGQASDIEIQANEILRLKGLLNDILANHTGQSLEQIEKDTERDFFMSAEEAKEYGLIDSVLT  190 (191)
T ss_pred             EEEecCc-ccccCCcchhHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhCCccCcHHHHHHcCCccEEec
Confidence            9999998 67889999999999999999999999999999999999999999999999999999999999985

This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.

>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed

Probab=100.00  E-value=6.3e-43  Score=278.58  Aligned_cols=147  Identities=39%  Similarity=0.587  Sum_probs=141.5

Q ss_pred             CCcCCCCCCCCeEEEEcCCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCc
Q 031001            1 MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSS   80 (167)
Q Consensus         1 ~~L~~~~~~~~I~l~INS~G~~~~~~~~~G~v~~g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~   80 (167)
                      +||+.+++.++|+|+|||||         |++++|++|||+|++++.||+|+|.|.|+|+|++|+++|++++|++.|||+
T Consensus        53 ~~l~~~~~~~~I~l~InSpG---------G~v~~g~~I~d~i~~~~~~v~t~~~G~aaS~a~~I~~ag~~~~r~~~p~s~  123 (200)
T PRK00277         53 LFLEAEDPDKDIYLYINSPG---------GSVTAGLAIYDTMQFIKPDVSTICIGQAASMGAFLLAAGAKGKRFALPNSR  123 (200)
T ss_pred             HHhhccCCCCCEEEEEECCC---------CcHHHHHHHHHHHHhcCCCEEEEEEeEeccHHHHHHhcCCCCCEEEcCCce
Confidence            47888888999999999999         999999999999999999999999999999999999999989999999999


Q ss_pred             eeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCchH
Q 031001           81 TKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDA  157 (167)
Q Consensus        81 ~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~~~  157 (167)
                      +|+|+|+ +++.|++.|++.+++++.++++.+.++|+++||++++++++++++|+||||+||++|||||+|+++.++
T Consensus       124 imih~p~-~~~~G~a~di~~~a~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~Ii~~~~~  199 (200)
T PRK00277        124 IMIHQPL-GGFQGQATDIEIHAREILKLKKRLNEILAEHTGQPLEKIEKDTDRDNFMSAEEAKEYGLIDEVLTKRKE  199 (200)
T ss_pred             EEeccCc-ccccCChhHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhCCccccHHHHHHcCCccEEeecCCC
Confidence            9999998 778899999999999999999999999999999999999999999999999999999999999988654

>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed

Probab=100.00  E-value=4.1e-42  Score=275.25  Aligned_cols=148  Identities=35%  Similarity=0.480  Sum_probs=141.0

Q ss_pred             CcCCCCCCCCeEEEEcCCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCce
Q 031001            2 WLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSST   81 (167)
Q Consensus         2 ~L~~~~~~~~I~l~INS~G~~~~~~~~~G~v~~g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~   81 (167)
                      ||+.+++.++|+|+|||||         |++++|++|||+|++++.||+|+|.|.|+|+|++|+++|++++|++.|||++
T Consensus        58 ~l~~~~~~~~I~l~INSpG---------G~v~~g~~I~d~i~~~~~~v~t~~~G~aaSaa~lI~~ag~~~~R~~~p~s~i  128 (207)
T PRK12553         58 VLESIDPDRDITLYINSPG---------GSVTAGDAIYDTIQFIRPDVQTVCTGQAASAGAVLLAAGTPGKRFALPNARI  128 (207)
T ss_pred             HHHhCCCCCCEEEEEeCCC---------CcHHHHHHHHHHHHhcCCCcEEEEEeehhhHHHHHHHcCCcCcEEECCCchh
Confidence            6778888999999999999         9999999999999999999999999999999999999999989999999999


Q ss_pred             eeecccc-cCCcCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCchHH
Q 031001           82 KLYLPVV-GRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDAA  158 (167)
Q Consensus        82 miH~p~~-~~~~G~~~dl~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~~~~  158 (167)
                      |+|+|+. +...|++.|++.+++++.++++.+.++|+++||++.+++++++++++||||+||++|||||+|+++..++
T Consensus       129 miH~p~~~~~~~G~a~d~~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~~~~~~lta~EA~e~GliD~I~~~~~dl  206 (207)
T PRK12553        129 LIHQPSLGGGIRGQASDLEIQAREILRMRERLERILAEHTGQSVEKIRKDTDRDKWLTAEEAKDYGLVDQIITSYRDL  206 (207)
T ss_pred             hhcCccccCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhcCccccHHHHHHcCCccEEcCchhhc
Confidence            9999985 3468999999999999999999999999999999999999999999999999999999999999887664

>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

Probab=100.00  E-value=5.4e-42  Score=265.00  Aligned_cols=140  Identities=36%  Similarity=0.517  Sum_probs=135.7

Q ss_pred             CcCCCCCCCCeEEEEcCCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCce
Q 031001            2 WLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSST   81 (167)
Q Consensus         2 ~L~~~~~~~~I~l~INS~G~~~~~~~~~G~v~~g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~   81 (167)
                      +|+.+++.++|.|+|||||         |+++++++||++|+.++.||+|++.|+|+|+|++|+++|++++|+++|++++
T Consensus        23 ~l~~~~~~~~i~l~InSpG---------G~v~~~~~i~~~i~~~~~~v~~~~~g~aaS~~~~i~~a~~~g~r~~~p~a~~   93 (162)
T cd07013          23 FLGAVNPEKDIYLYINSPG---------GDVFAGMAIYDTIKFIKADVVTIIDGLAASMGSVIAMAGAKGKRFILPNAMM   93 (162)
T ss_pred             HHhcCCCCCCEEEEEECCC---------CcHHHHHHHHHHHHhcCCCceEEEEeehhhHHHHHHHcCCCCcEEEecCEEE
Confidence            6778888899999999999         9999999999999999999999999999999999999999999999999999


Q ss_pred             eeecccccCCcCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEE
Q 031001           82 KLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKI  151 (167)
Q Consensus        82 miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I  151 (167)
                      |+|+|+ +...|++.|++++++++++.++.+.++|+++||+++++|+++|++++||+|+||++|||||+|
T Consensus        94 ~ih~~~-~~~~g~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~~sa~eA~~~GliD~i  162 (162)
T cd07013          94 MIHQPW-GGTLGDATDMRIYADLLLKVEGNLVSAYAHKTGQSEEELHADLERDTWLSAREAVEYGFADTI  162 (162)
T ss_pred             EEccCc-ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHcCCccccHHHHHHcCCCCcC
Confidence            999998 778899999999999999999999999999999999999999999999999999999999986

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas

>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=100.00  E-value=1.4e-42  Score=271.47  Aligned_cols=144  Identities=37%  Similarity=0.556  Sum_probs=134.2

Q ss_pred             CcCCCCCCCCeEEEEcCCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCce
Q 031001            2 WLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSST   81 (167)
Q Consensus         2 ~L~~~~~~~~I~l~INS~G~~~~~~~~~G~v~~g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~   81 (167)
                      ||+++++.++|+|+|||||         |++++|++|||+|+.++.||+|+|.|.|+|+|++|+++|++.+|++.|+|.|
T Consensus        39 ~l~~~~~~~~i~i~INSpG---------G~v~~g~~i~~~i~~~~~~v~t~~~G~aaSaa~~i~~ag~~~~R~~~~~s~~  109 (182)
T PF00574_consen   39 YLENEDKNKPINIYINSPG---------GDVDAGLAIYDAIRSSKAPVTTVVLGLAASAATLIFLAGDKGKRYASPNSRF  109 (182)
T ss_dssp             HHHHHTSSSEEEEEEEECE---------BCHHHHHHHHHHHHHSSSEEEEEEEEEEETHHHHHHHTSSTTTEEE-TT-EE
T ss_pred             HHhccCCCceEEEEEcCCC---------CccHHHHHHHHHHHhcCCCeEEEEeCccccceehhhhcCCcCceeeeecCEE
Confidence            5777888999999999999         9999999999999999999999999999999999999999888999999999


Q ss_pred             eeecccccCCcCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001           82 KLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ  155 (167)
Q Consensus        82 miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~  155 (167)
                      |+|+|+ ..+.|+..+++..++++.+.++.+.++|+++||+++++++++|++|+||+|+||++|||||+|++++
T Consensus       110 m~H~p~-~~~~g~~~~l~~~~~~l~~~~~~~~~~~~~~tg~~~~~i~~~~~~~~~l~a~EA~~~GiiD~I~~~~  182 (182)
T PF00574_consen  110 MIHQPS-TGSGGNASELREQAKELEKLNERIANIYAERTGLSKEEIEELMDRDTWLSAEEALEYGIIDEIIESR  182 (182)
T ss_dssp             EES-CE-EEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHCSSTEEEEHHHHHHHTSSSEEESS-
T ss_pred             Eeecce-eecccccchhHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhCCccccHHHHHHcCCCCEeccCC
Confidence            999998 6788899999999999999999999999999999999999999999999999999999999999763

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....

>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

Probab=100.00  E-value=3.6e-41  Score=262.20  Aligned_cols=140  Identities=44%  Similarity=0.660  Sum_probs=134.8

Q ss_pred             CcCCCCCCCCeEEEEcCCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCce
Q 031001            2 WLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSST   81 (167)
Q Consensus         2 ~L~~~~~~~~I~l~INS~G~~~~~~~~~G~v~~g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~   81 (167)
                      |++.+++.++|+|+|||||         |++++|++||+.|+.++.||+|++.|+|+|+|++|+++|++++|++.|||++
T Consensus        32 ~~~~~~~~~~i~l~inSpG---------G~v~~~~~i~~~l~~~~~~v~t~~~g~aaS~~~~i~~~g~~~~r~~~~~a~~  102 (171)
T cd07017          32 YLESEDPKKPIYLYINSPG---------GSVTAGLAIYDTMQYIKPPVSTICLGLAASMGALLLAAGTKGKRYALPNSRI  102 (171)
T ss_pred             HHHccCCCCceEEEEECCC---------CCHHHHHHHHHHHHhcCCCEEEEEEeEehhHHHHHHHcCCCCCEEEccchHH
Confidence            5677777899999999999         9999999999999999999999999999999999999999889999999999


Q ss_pred             eeecccccCCcCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEE
Q 031001           82 KLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKI  151 (167)
Q Consensus        82 miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I  151 (167)
                      |+|+|+ ....|++.|+..+++++.++++.+.++|+++||++.+++.++|++++||+|+||++|||||+|
T Consensus       103 ~~h~~~-~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~tg~~~~~i~~~~~~~~~lta~EA~e~GiiD~V  171 (171)
T cd07017         103 MIHQPL-GGAGGQASDIEIQAKEILRLRRRLNEILAKHTGQPLEKIEKDTDRDRYMSAEEAKEYGLIDKI  171 (171)
T ss_pred             HHcCCC-ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCccccHHHHHHcCCCccC
Confidence            999998 678899999999999999999999999999999999999999999999999999999999986

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ

>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

Probab=100.00  E-value=4.3e-32  Score=208.27  Aligned_cols=132  Identities=29%  Similarity=0.359  Sum_probs=126.2

Q ss_pred             CCCCeEEEEcCCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeeccc
Q 031001            8 ASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPV   87 (167)
Q Consensus         8 ~~~~I~l~INS~G~~~~~~~~~G~v~~g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~   87 (167)
                      ..++|.|+|||||         |++.++++|++.|+.++.||++++.|.|+|+|++|+++|+  +|++.|+++||+|+|+
T Consensus        29 ~~~~i~l~inspG---------G~~~~~~~i~~~i~~~~~pvi~~v~g~a~s~g~~ia~a~d--~~~~~~~a~~~~~~~~   97 (160)
T cd07016          29 DDSDITVRINSPG---------GDVFAGLAIYNALKRHKGKVTVKIDGLAASAASVIAMAGD--EVEMPPNAMLMIHNPS   97 (160)
T ss_pred             CCCCEEEEEECCC---------CCHHHHHHHHHHHHhcCCCEEEEEcchHHhHHHHHHhcCC--eEEECCCcEEEEECCc
Confidence            3489999999999         9999999999999999999999999999999999999995  7999999999999998


Q ss_pred             ccCCcCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEE
Q 031001           88 VGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKI  151 (167)
Q Consensus        88 ~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I  151 (167)
                       ....|+..+++...+++++.++.+.+.|++++|++++++.+++.+++||+++||+++||||+|
T Consensus        98 -~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~l~a~eA~~~GliD~v  160 (160)
T cd07016          98 -TGAAGNADDLRKAADLLDKIDESIANAYAEKTGLSEEEISALMDAETWLTAQEAVELGFADEI  160 (160)
T ss_pred             -cccCcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCCeECcHHHHHHcCCCCcC
Confidence             667788889999999999999999999999999999999999999999999999999999986

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a

>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease

Probab=99.97  E-value=4.6e-31  Score=205.91  Aligned_cols=138  Identities=14%  Similarity=0.154  Sum_probs=123.3

Q ss_pred             CCCCCCeEEEEcCCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCeEEEEc---cccccHHHHHHhcCCCCceeeecCCcee
Q 031001            6 DNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNC---GMAYGQAAMLLSVGAKGYRGLQPNSSTK   82 (167)
Q Consensus         6 ~~~~~~I~l~INS~G~~~~~~~~~G~v~~g~aI~~~i~~~~~~V~t~~~---G~aaS~a~~i~~ag~~~~R~~~p~s~~m   82 (167)
                      +++.+.|.|+|||||         |.++++++|+++|+.++.||.|+|.   |+|+|+|++|+++|+  +|++.|+++++
T Consensus        27 ~~~~~~i~l~inSPG---------G~v~~~~~I~~~i~~~~~pvv~~v~p~g~~AaSag~~I~~a~~--~i~m~p~s~iG   95 (172)
T cd07015          27 QDNAEAIIIELDTPG---------GRADAAGNIVQRIQQSKIPVIIYVYPPGASAASAGTYIALGSH--LIAMAPGTSIG   95 (172)
T ss_pred             cCCCCeEEEEEECCC---------CCHHHHHHHHHHHHhcCcCEEEEEecCCCeehhHHHHHHHhcC--ceEECCCCEEE
Confidence            356789999999999         9999999999999999999999999   999999999999995  69999999999


Q ss_pred             eecccccCCcCC-----hhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCchH
Q 031001           83 LYLPVVGRSSGP-----VTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDA  157 (167)
Q Consensus        83 iH~p~~~~~~G~-----~~dl~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~~~  157 (167)
                      .|+|. .. .|+     ..+.+....++.++++     +++++|++++.+++++.+++|||++||++||+||.|.++.++
T Consensus        96 ~~~pi-~~-~g~~~~~~~~~~ki~~~~~~~~r~-----~A~~~Gr~~~~a~~~v~~~~~lta~EA~~~G~iD~ia~~~~~  168 (172)
T cd07015          96 ACRPI-LG-YSQNGSIIEAPPKITNYFIAYIKS-----LAQESGRNATIAEEFITKDLSLTPEEALKYGVIEVVARDINE  168 (172)
T ss_pred             Ecccc-cc-CCCCCccccchHHHHHHHHHHHHH-----HHHHHCcCHHHHHHHHHhhcCcCHHHHHHcCCceeeeCCHHH
Confidence            99997 43 355     5566656666655554     999999999999999999999999999999999999999999


Q ss_pred             HHhh
Q 031001          158 AYEK  161 (167)
Q Consensus       158 ~~~~  161 (167)
                      ++++
T Consensus       169 ll~~  172 (172)
T cd07015         169 LLKK  172 (172)
T ss_pred             HhhC
Confidence            8864

Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle

>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease

Probab=99.95  E-value=4.6e-27  Score=179.89  Aligned_cols=136  Identities=24%  Similarity=0.349  Sum_probs=123.6

Q ss_pred             CCCCCCCCeEEEEcCCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceee
Q 031001            4 DFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKL   83 (167)
Q Consensus         4 ~~~~~~~~I~l~INS~G~~~~~~~~~G~v~~g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~mi   83 (167)
                      +.+++.+.|.|++||||         |++.++.+|+++|+.++.||++++.|.|+|+|++|+++|+  +|++.|++.+++
T Consensus        24 ~~d~~~~~ivl~~~s~G---------g~~~~~~~i~~~l~~~~kpvva~~~g~~~s~g~~la~~~d--~~~~~~~a~~~~   92 (161)
T cd00394          24 EADNSVKAIVLEVNTPG---------GRVDAGMNIVDALQASRKPVIAYVGGQAASAGYYIATAAN--KIVMAPGTRVGS   92 (161)
T ss_pred             HhCCCCceEEEEEECCC---------cCHHHHHHHHHHHHHhCCCEEEEECChhHHHHHHHHhCCC--EEEECCCCEEEE
Confidence            44555789999999999         9999999999999999999999999999999999999995  899999999999


Q ss_pred             ecccccCCcCC--hhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEE
Q 031001           84 YLPVVGRSSGP--VTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKI  151 (167)
Q Consensus        84 H~p~~~~~~G~--~~dl~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I  151 (167)
                      |+|+ ....+.  ..+.+...+.++.+.+.+.+.+++++|++++++.+++.+++||+|+||+++||||+|
T Consensus        93 ~g~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~r~~~~~~~~~~~~~~~~~~a~eA~~~GLvD~i  161 (161)
T cd00394          93 HGPI-GGYGGNGNPTAQEADQRIILYFIARFISLVAENRGQTTEKLEEDIEKDLVLTAQEALEYGLVDAL  161 (161)
T ss_pred             eeeE-EecCCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhcCCcEEcHHHHHHcCCcCcC
Confidence            9998 444443  366666778899999999999999999999999999999999999999999999986

Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec

>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease

Probab=99.94  E-value=1.4e-25  Score=176.77  Aligned_cols=147  Identities=20%  Similarity=0.219  Sum_probs=124.0

Q ss_pred             CCCCCeEEEEcCCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCeEEEEc---cccccHHHHHHhcCCCCceeeecCCceee
Q 031001            7 NASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNC---GMAYGQAAMLLSVGAKGYRGLQPNSSTKL   83 (167)
Q Consensus         7 ~~~~~I~l~INS~G~~~~~~~~~G~v~~g~aI~~~i~~~~~~V~t~~~---G~aaS~a~~i~~ag~~~~R~~~p~s~~mi   83 (167)
                      ++.+.|.|+|||||         |+++++.+|++.|+.++.||.+.+.   |.|+|+|++|+++|  +.|++.|+++|++
T Consensus        28 ~~~~~vvl~InSpG---------G~v~~~~~i~~~l~~~~kPvia~v~~~~G~AasgG~~iala~--D~iva~p~a~~g~   96 (187)
T cd07020          28 GGADALIIELDTPG---------GLLDSTREIVQAILASPVPVVVYVYPSGARAASAGTYILLAA--HIAAMAPGTNIGA   96 (187)
T ss_pred             CCCCEEEEEEECCC---------CCHHHHHHHHHHHHhCCCCEEEEEecCCCCchhHHHHHHHhC--CceeECCCCcEEe
Confidence            34689999999999         9999999999999999999999998   99999999999999  4799999999999


Q ss_pred             ecccccCCcCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCchHHHhhhc
Q 031001           84 YLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDAAYEKRV  163 (167)
Q Consensus        84 H~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~~~~~~~~~  163 (167)
                      |.|. ....+...+.....+.+..+. .+...+++++|++++.+++++.+++||+++||+++||+|+|.++.++++...+
T Consensus        97 ~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~G~~~~~a~~~l~~g~~~~a~eA~~~Glvd~v~~~~~~~~~~~~  174 (187)
T cd07020          97 AHPV-AIGGGGGSDPVMEKKILNDAV-AYIRSLAELRGRNAEWAEKAVRESLSLTAEEALKLGVIDLIAADLNELLKKLD  174 (187)
T ss_pred             cccc-ccCCCCcchHHHHHHHHHHHH-HHHHHHHHHcCCCHHHHHHHHHcCCeecHHHHHHcCCcccccCCHHHHHHHcC
Confidence            9997 332222223333344444444 35678999999999999999999999999999999999999999888888777


Q ss_pred             ccC
Q 031001          164 MIT  166 (167)
Q Consensus       164 ~~~  166 (167)
                      +-+
T Consensus       175 ~~~  177 (187)
T cd07020         175 GRT  177 (187)
T ss_pred             CcE
Confidence            654

Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c

>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease

Probab=99.92  E-value=2.2e-24  Score=169.20  Aligned_cols=138  Identities=17%  Similarity=0.201  Sum_probs=119.0

Q ss_pred             CCCCCeEEEEcCCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecc
Q 031001            7 NASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLP   86 (167)
Q Consensus         7 ~~~~~I~l~INS~G~~~~~~~~~G~v~~g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p   86 (167)
                      ++.+.|.|+|||||         |.++++..|++.|+.++.||++++.|.|+|+|++|+++|  +++++.|++.++.|.|
T Consensus        28 ~~~~~ivl~inspG---------G~v~~~~~I~~~l~~~~~pvva~V~g~AaSaG~~ia~a~--d~i~m~p~a~iG~~~~   96 (178)
T cd07021          28 EGADAVVLDIDTPG---------GRVDSALEIVDLILNSPIPTIAYVNDRAASAGALIALAA--DEIYMAPGATIGAAEP   96 (178)
T ss_pred             CCCCeEEEEEECcC---------CCHHHHHHHHHHHHhCCCCEEEEECCchHHHHHHHHHhC--CeEEECCCCeEecCee
Confidence            44689999999999         999999999999999999999999999999999999999  5799999999999999


Q ss_pred             cccCCcCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhCCC-------------ccccHHHHHHcCcceEEeC
Q 031001           87 VVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRP-------------KYMQAKEAIVYGLADKIID  153 (167)
Q Consensus        87 ~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~-------------~~lsa~EA~e~GliD~I~~  153 (167)
                      . ....+...+     +.+......+.+.|++++|++++.++++++++             .|||++||+++|++|.|.+
T Consensus        97 v-~~~~~~~~~-----~K~~~~~~~~~~~~A~~~gr~~~~a~~mv~~~~~v~~~~~~~~~~l~lta~eA~~~g~~d~ia~  170 (178)
T cd07021          97 I-PGDGNGAAD-----EKVQSYWRAKMRAAAEKKGRDPDIAEAMVDKDIEVPGVGIKGGELLTLTADEALKVGYAEGIAG  170 (178)
T ss_pred             E-cCCCccchh-----HHHHHHHHHHHHHHHHHhCCCHHHHHHHhhhhcccccccccccceeeeCHHHHHHhCCeEEEEC
Confidence            7 433332222     22333344556679999999999999999999             5999999999999999999


Q ss_pred             CchHHHhh
Q 031001          154 SQDAAYEK  161 (167)
Q Consensus       154 ~~~~~~~~  161 (167)
                      +.++++++
T Consensus       171 ~~~~ll~~  178 (178)
T cd07021         171 SLDELLVK  178 (178)
T ss_pred             CHHHHhhC
Confidence            99998864

Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall

>cd07014 S49_SppA Signal peptide peptidase A

Probab=99.75  E-value=3e-17  Score=127.92  Aligned_cols=135  Identities=21%  Similarity=0.187  Sum_probs=112.6

Q ss_pred             CCCCCeEEEEcCCCCCCCCCCCCCCHHHHHHHHHHHh---hcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceee
Q 031001            7 NASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMA---YCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKL   83 (167)
Q Consensus         7 ~~~~~I~l~INS~G~~~~~~~~~G~v~~g~aI~~~i~---~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~mi   83 (167)
                      +..+.|.|.+||+|         |++.....+.++++   .++.||.+++.|.|+|+|+.++++|  +.|++.|++.|++
T Consensus        38 ~~v~~vvl~~~~~g---------g~~~~~~~~~~~i~~~~~~~kpVia~v~G~a~g~g~~la~a~--D~i~a~~~a~~~~  106 (177)
T cd07014          38 PKVKAIVLRVNSPG---------GSVTASEVIRAELAAARAAGKPVVASGGGNAASGGYWISTPA--NYIVANPSTLVGS  106 (177)
T ss_pred             CCceEEEEEeeCCC---------cCHHHHHHHHHHHHHHHhCCCCEEEEECCchhHHHHHHHHhC--CEEEECCCCeEEE
Confidence            34578999999999         99887777766554   5579999999999999999999999  4799999999999


Q ss_pred             ecccccCCcCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCchHHHhh
Q 031001           84 YLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDAAYEK  161 (167)
Q Consensus        84 H~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~~~~~~~  161 (167)
                      |.++.    +    .......+..+.+.+.+.+++..|++.+.+.+++....||+|+||+++||||+|.. .+++.++
T Consensus       107 ~G~~~----~----~~~~~~~l~~~~~~~~~~v~~~rg~~~~~~~~~l~~g~~~~a~~A~~~GLVD~v~~-~~e~~~~  175 (177)
T cd07014         107 IGIFG----V----QLADQLSIENGYKRFITLVADNRHSTPEQQIDKIAQGGVWTGQDAKANGLVDSLGS-FDDAVAK  175 (177)
T ss_pred             echHh----h----HHHHHHHHHHHHHHHHHHHHHhCCCCHHHhHHHhcCcCeEeHHHHHHcCCcccCCC-HHHHHHH
Confidence            87762    1    11123467788889999999999999999999999999999999999999999986 4555543

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p

>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type

Probab=99.72  E-value=1.6e-16  Score=126.95  Aligned_cols=136  Identities=21%  Similarity=0.222  Sum_probs=108.3

Q ss_pred             CCCCCeEEEEcCCCCCCCCCCCCCCHHHHHHHHHHHhhcC--CCeEEEEccccccHHHHHHhcCCCCceeeecCCceee-
Q 031001            7 NASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCK--SKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKL-   83 (167)
Q Consensus         7 ~~~~~I~l~INS~G~~~~~~~~~G~v~~g~aI~~~i~~~~--~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~mi-   83 (167)
                      +..+.|.|.+||||         |++..+..|++.|+.++  .||++++.|.|+|+|++|+++|  ++|++.|++.+.. 
T Consensus        29 ~~i~~vvl~~~s~G---------g~~~~~~~l~~~i~~~~~~kpvia~v~g~a~s~g~~la~aa--D~i~a~p~a~vg~i   97 (207)
T TIGR00706        29 KSIKALLLRINSPG---------GTVVASEEIYEKLKKLKAKKPVVASMGGVAASGGYYIAMAA--DEIVANPGTITGSI   97 (207)
T ss_pred             CCccEEEEEecCCC---------CCHHHHHHHHHHHHHhcCCCCEEEEECCccchHHHHHHhcC--CEEEECCCCeEEee
Confidence            34578999999999         99999999999999998  9999999999999999999999  5799999987533 


Q ss_pred             -----ecccc------c-----CCcCC------------hhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhCCCc
Q 031001           84 -----YLPVV------G-----RSSGP------------VTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPK  135 (167)
Q Consensus        84 -----H~p~~------~-----~~~G~------------~~dl~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~  135 (167)
                           |....      +     ...|+            ..+-+...+.|+.+.+.+.+.+++..|+++++++++++...
T Consensus        98 Gv~~~~~~~~~~l~k~Gv~~~~~~~g~~K~~~~~~~~~s~~~~e~~~~~l~~~~~~f~~~va~~R~~~~~~~~~~~~~~~  177 (207)
T TIGR00706        98 GVILQGANVEKLYEKLGIEFEVIKSGEYKDIGSPTRELTPEERDILQNLVNESYEQFVQVVAKGRNLPVEDVKKFADGRV  177 (207)
T ss_pred             eEEEecCCHHHHHHhCCceEEEEEcCCCcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCCc
Confidence                 32110      0     00111            11223334567777888999999999999999999887765


Q ss_pred             cccHHHHHHcCcceEEeCC
Q 031001          136 YMQAKEAIVYGLADKIIDS  154 (167)
Q Consensus       136 ~lsa~EA~e~GliD~I~~~  154 (167)
                       ++++||+++||||+|...
T Consensus       178 -~~~~~A~~~gLvD~i~~~  195 (207)
T TIGR00706       178 -FTGRQALKLRLVDKLGTE  195 (207)
T ss_pred             -ccHHHHHHcCCCcccCCH
Confidence             699999999999999753

The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.

>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad

Probab=99.69  E-value=5.7e-16  Score=123.56  Aligned_cols=139  Identities=19%  Similarity=0.183  Sum_probs=108.6

Q ss_pred             CCCCCCCeEEEEcCCCCCCCCCCCCCCHHHHHHHHHHHhhc---CCCeEEEEccccccHHHHHHhcCCCCceeeecCCce
Q 031001            5 FDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYC---KSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSST   81 (167)
Q Consensus         5 ~~~~~~~I~l~INS~G~~~~~~~~~G~v~~g~aI~~~i~~~---~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~   81 (167)
                      ..+..+.|.|.+||||         |++..+..++++++..   +.||++++.|.|+|+|..|+++|  ++|++.|+|.+
T Consensus        31 ~d~~i~~ivl~~~s~G---------g~~~~~~~i~~~i~~~~~~~kpvia~v~g~~~s~g~~lA~aa--D~i~a~~~s~~   99 (208)
T cd07023          31 EDDSVKAVVLRINSPG---------GSVVASEEIYREIRRLRKAKKPVVASMGDVAASGGYYIAAAA--DKIVANPTTIT   99 (208)
T ss_pred             hCCCCcEEEEEEECCC---------CCHHHHHHHHHHHHHHHhcCCcEEEEECCcchhHHHHHHhhC--CEEEECCCCeE
Confidence            3445789999999999         9999999998888654   57999999999999999999998  57999999986


Q ss_pred             ------eee------------cccccCCcC------------ChhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhh
Q 031001           82 ------KLY------------LPVVGRSSG------------PVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDI  131 (167)
Q Consensus        82 ------miH------------~p~~~~~~G------------~~~dl~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~  131 (167)
                            +.|            ++.. ...|            +..+-+...+.|+.+.+.+.+.+++..|++.+++.++.
T Consensus       100 g~iG~~~~~~~~~~~l~k~Gi~~~~-~~~g~~K~~~~~~~~~s~~~~e~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~  178 (208)
T cd07023         100 GSIGVIGQGPNLEELLDKLGIERDT-IKSGPGKDKGSPDRPLTEEERAILQALVDDIYDQFVDVVAEGRGMSGERLDKLA  178 (208)
T ss_pred             EeCcEEEecCCHHHHHHhcCCceEE-EecCCCccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHhc
Confidence                  333            1110 0111            11233444567788888999999999999999999988


Q ss_pred             CCCccccHHHHHHcCcceEEeCCch
Q 031001          132 QRPKYMQAKEAIVYGLADKIIDSQD  156 (167)
Q Consensus       132 ~~~~~lsa~EA~e~GliD~I~~~~~  156 (167)
                      +.+. +++++|+++||||+|....+
T Consensus       179 ~~~~-~~a~~A~~~gLiD~i~~~~~  202 (208)
T cd07023         179 DGRV-WTGRQALELGLVDELGGLDD  202 (208)
T ss_pred             CCcE-EEHHHHHHcCCCcccCCHHH
Confidence            8666 47999999999999975433

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad

>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad

Probab=99.65  E-value=5.1e-15  Score=118.77  Aligned_cols=135  Identities=20%  Similarity=0.267  Sum_probs=107.8

Q ss_pred             CCCCCCeEEEEcCCCCCCCCCCCCCCHHHHHHHHHHHhhcC--CCeEEEEccccccHHHHHHhcCCCCceeeecCCcee-
Q 031001            6 DNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCK--SKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTK-   82 (167)
Q Consensus         6 ~~~~~~I~l~INS~G~~~~~~~~~G~v~~g~aI~~~i~~~~--~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~m-   82 (167)
                      .+..+.|.|.+||+|         |++.....|+++|+.++  .||.+++.|.|+|.|..++++|  +++++.|++.+. 
T Consensus        40 d~~i~~Vvl~~~s~g---------g~~~~~~~l~~~l~~~~~~KpViA~v~g~a~s~gy~lA~~a--D~i~a~~~a~~g~  108 (214)
T cd07022          40 DPDVRAIVLDIDSPG---------GEVAGVFELADAIRAARAGKPIVAFVNGLAASAAYWIASAA--DRIVVTPTAGVGS  108 (214)
T ss_pred             CCCCcEEEEEEeCCC---------CcHHHHHHHHHHHHHHhcCCCEEEEECCchhhHHHHHHhcC--CEEEEcCCCeEEe
Confidence            344578999999999         99999999999999988  9999999999999999999999  479999999852 


Q ss_pred             -----eecccc------c-----CCcCC------------hhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhCCC
Q 031001           83 -----LYLPVV------G-----RSSGP------------VTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRP  134 (167)
Q Consensus        83 -----iH~p~~------~-----~~~G~------------~~dl~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~  134 (167)
                           .|....      +     ...|.            ..+-+...+.++.+.+.+.+.+++..|++.+++.+.+  .
T Consensus       109 iG~~~~~~~~~~ll~k~Gi~~~~~~~g~~K~~~~~~~~~s~~~re~~~~~l~~~~~~f~~~V~~~R~~~~~~~~~~~--~  186 (214)
T cd07022         109 IGVVASHVDQSKALEKAGLKVTLIFAGAHKVDGNPDEPLSDEARARLQAEVDALYAMFVAAVARNRGLSAAAVRATE--G  186 (214)
T ss_pred             eeEEEecCCHHHHHHhCCCeEEEEEcCCCccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhh--c
Confidence                 222110      0     01121            1233334456777888999999999999999999888  6


Q ss_pred             ccccHHHHHHcCcceEEeC
Q 031001          135 KYMQAKEAIVYGLADKIID  153 (167)
Q Consensus       135 ~~lsa~EA~e~GliD~I~~  153 (167)
                      ..|+++||+++||||+|..
T Consensus       187 ~~~~~~~Al~~gLvD~i~~  205 (214)
T cd07022         187 GVFRGQEAVAAGLADAVGT  205 (214)
T ss_pred             CeeeHHHHHHcCCCcccCC
Confidence            6789999999999999964

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.

>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type

Probab=99.63  E-value=9e-15  Score=132.81  Aligned_cols=135  Identities=21%  Similarity=0.250  Sum_probs=108.9

Q ss_pred             CCCCeEEEEcCCCCCCCCCCCCCCHHHHHHHHHHHhhc---CCCeEEEEccccccHHHHHHhcCCCCceeeecCCce---
Q 031001            8 ASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYC---KSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSST---   81 (167)
Q Consensus         8 ~~~~I~l~INS~G~~~~~~~~~G~v~~g~aI~~~i~~~---~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~---   81 (167)
                      ..+.|.|+|||||         |++.++..|++.|+..   +.||++.+.|.|+|+|.+|+++|  +++++.|++.+   
T Consensus       346 ~VkaIVLrinSpG---------Gs~~ase~i~~~i~~~~~~gKPVva~~~g~aaSggY~iA~aa--D~I~a~p~t~~GSI  414 (584)
T TIGR00705       346 DIKAVVLRINSPG---------GSVFASEIIRRELARAQARGKPVIVSMGAMAASGGYWIASAA--DYIVASPNTITGSI  414 (584)
T ss_pred             CceEEEEEecCCC---------CCHHHHHHHHHHHHHHHhCCCcEEEEECCccccHHHHHHHhC--CEEEECCCCeeecC
Confidence            3589999999999         9999999999998744   48999999999999999999999  47999999976   


Q ss_pred             ---eeeccc------cc-----CCcC-----------ChhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhCCCcc
Q 031001           82 ---KLYLPV------VG-----RSSG-----------PVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKY  136 (167)
Q Consensus        82 ---miH~p~------~~-----~~~G-----------~~~dl~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~  136 (167)
                         +.+...      ++     ..+|           +..+.+...+.++...+.+.+.+++..|++.++++++.+...|
T Consensus       415 Gv~~~~~~~~~~l~klGi~~~~~~t~~~~~~s~~~~~t~~~~~~~~~~l~~~y~~F~~~Va~~R~l~~e~v~~ia~Grv~  494 (584)
T TIGR00705       415 GVFSVLPTFENSLDRIGVHVDGVSTHELANVSLLRPLTAEDQAIMQLSVEAGYRRFLSVVSAGRNLTPTQVDKVAQGRVW  494 (584)
T ss_pred             EEEEEccCHHHHHHhcCCceEEEeccCcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHhCCCc
Confidence               544211      00     0011           2344455567788888899999999999999999998886555


Q ss_pred             ccHHHHHHcCcceEEeCC
Q 031001          137 MQAKEAIVYGLADKIIDS  154 (167)
Q Consensus       137 lsa~EA~e~GliD~I~~~  154 (167)
                       +++||+++||||+|..-
T Consensus       495 -tg~eA~~~GLVD~ig~~  511 (584)
T TIGR00705       495 -TGEDAVSNGLVDALGGL  511 (584)
T ss_pred             -CHHHHHHcCCcccCCCH
Confidence             99999999999999654

E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.

>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=99.62  E-value=5.9e-15  Score=125.13  Aligned_cols=144  Identities=21%  Similarity=0.264  Sum_probs=111.7

Q ss_pred             CCCCCCCeEEEEcCCCCCCCCCCCCCCHHHHHHHHHHHhhcCC--CeEEEEccccccHHHHHHhcCCCCceeeecCCce-
Q 031001            5 FDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKS--KVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSST-   81 (167)
Q Consensus         5 ~~~~~~~I~l~INS~G~~~~~~~~~G~v~~g~aI~~~i~~~~~--~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~-   81 (167)
                      ..++.++|.|.|||||         |++.++..|++.|+.++.  ||++.+-++|||.|++|.+++  ++.++.|+|.+ 
T Consensus        94 ~~~~vk~vvL~inSPG---------G~v~as~~i~~~l~~l~~~~PV~v~v~~~AASGGY~IA~aA--d~I~a~p~si~G  162 (317)
T COG0616          94 ADPSVKAVVLRINSPG---------GSVVASELIARALKRLRAKKPVVVSVGGYAASGGYYIALAA--DKIVADPSSITG  162 (317)
T ss_pred             cCCCCceEEEEEECcC---------CchhHHHHHHHHHHHHhhcCCEEEEECCeecchhhhhhccC--CEEEecCCceee
Confidence            3456799999999999         999999999999999986  599999999999999999999  57999999983 


Q ss_pred             -----eeecccc------c-----CCcCC-----------hhHHH-HHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhCC
Q 031001           82 -----KLYLPVV------G-----RSSGP-----------VTDMW-RKAKDLEANAESYIELLAKGTGKPKEEIAKDIQR  133 (167)
Q Consensus        82 -----miH~p~~------~-----~~~G~-----------~~dl~-~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~  133 (167)
                           +.|....      +     ..+|.           ..+.+ ...+.++...+.|.+..++..+.+.++ ......
T Consensus       163 SIGVi~~~~~~~~l~~k~Gv~~~~~~ag~~k~~~~~~~~~t~e~~~~~q~~~~e~y~~F~~~V~~~R~~~~~~-~~~~a~  241 (317)
T COG0616         163 SIGVISGAPNFEELLEKLGVEKEVITAGEYKDILSPFRPLTEEEREILQKEIDETYDEFVDKVAEGRGLSDEA-VDKLAT  241 (317)
T ss_pred             eceeEEecCCHHHHHHhcCCceeeeeccccccccCcccCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhH-HHHHhc
Confidence                 3332210      0     11121           22222 223466677788999999999999888 445566


Q ss_pred             CccccHHHHHHcCcceEEeCCchHHHh
Q 031001          134 PKYMQAKEAIVYGLADKIIDSQDAAYE  160 (167)
Q Consensus       134 ~~~lsa~EA~e~GliD~I~~~~~~~~~  160 (167)
                      ...+++++|++.||||++.+..+.+..
T Consensus       242 g~v~~g~~A~~~gLVDelg~~~~av~~  268 (317)
T COG0616         242 GRVWTGQQALELGLVDELGGLDDAVKD  268 (317)
T ss_pred             cceecHHHhhhcCCchhcCCHHHHHHH
Confidence            888899999999999999887665543

>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad

Probab=99.61  E-value=3e-14  Score=114.18  Aligned_cols=138  Identities=23%  Similarity=0.242  Sum_probs=105.9

Q ss_pred             CCCCCCeEEEEcCCCCCCCCCCCCCCHHHHHHHHHHH---hhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCcee
Q 031001            6 DNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAM---AYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTK   82 (167)
Q Consensus         6 ~~~~~~I~l~INS~G~~~~~~~~~G~v~~g~aI~~~i---~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~m   82 (167)
                      .+..+.|.|.+||+|         |++.+...++++|   +.++.||++++.|.|+|+|+.|+++|  +.+++.|++.+.
T Consensus        36 d~~v~~ivL~~~s~G---------g~~~~~~~~~~~l~~~~~~~kpVia~v~g~a~s~gy~la~~a--D~i~a~~~a~~g  104 (211)
T cd07019          36 DPKVKAIVLRVNSPG---------GSVTASEVIRAELAAARAAGKPVVVSAGGAAASGGYWISTPA--NYIVANPSTLTG  104 (211)
T ss_pred             CCCceEEEEEEcCCC---------cCHHHHHHHHHHHHHHHhCCCCEEEEECCeehhHHHHHHHhC--CEEEEcCCCEEE
Confidence            334589999999999         9999988888765   45678999999999999999999999  579999998863


Q ss_pred             eeccc------------cc------CCcC----------ChhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhCCC
Q 031001           83 LYLPV------------VG------RSSG----------PVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRP  134 (167)
Q Consensus        83 iH~p~------------~~------~~~G----------~~~dl~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~  134 (167)
                      ..-..            ++      ...|          ++.+-+...+.++.+.+.+.+.+++..+++++++++..+ +
T Consensus       105 siGv~~~~~~~~~~l~k~Gv~~~~~~~~g~~k~~~~~~~s~e~r~~~~~~ld~~~~~f~~~Va~~R~~~~~~l~~~~~-~  183 (211)
T cd07019         105 SIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRALPPEAQLGLQLSIENGYKRFITLVADARHSTPEQIDKIAQ-G  183 (211)
T ss_pred             EeEEEEEcCCHHHHHHhcCCceEEEEecCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHhcC-C
Confidence            22110            00      0001          111122233567888889999999999999999988654 6


Q ss_pred             ccccHHHHHHcCcceEEeCCc
Q 031001          135 KYMQAKEAIVYGLADKIIDSQ  155 (167)
Q Consensus       135 ~~lsa~EA~e~GliD~I~~~~  155 (167)
                      .+++++||+++||||+|....
T Consensus       184 ~~~~~~~A~~~GLvD~i~~~~  204 (211)
T cd07019         184 HVWTGQDAKANGLVDSLGDFD  204 (211)
T ss_pred             cEEeHHHHHHcCCcccCCCHH
Confidence            899999999999999987643

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te

>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad

Probab=99.51  E-value=5.2e-13  Score=107.74  Aligned_cols=140  Identities=19%  Similarity=0.121  Sum_probs=107.6

Q ss_pred             CCCCCeEEEEcCCCCCCCCCCCCCCHHHHHHHHHHHhh---cCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceee
Q 031001            7 NASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAY---CKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKL   83 (167)
Q Consensus         7 ~~~~~I~l~INS~G~~~~~~~~~G~v~~g~aI~~~i~~---~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~mi   83 (167)
                      +..+.|.|.+||||         |.+.+...|++.|+.   .+.||.+++.| |+|.|.+|+++|  +++++.|++.+.+
T Consensus        45 ~~ik~vvL~~~s~g---------g~~~~~~el~~~i~~~~~~~kpVia~~~~-~~sggy~lasaa--d~I~a~p~~~vg~  112 (222)
T cd07018          45 DRIKGIVLDLDGLS---------GGLAKLEELRQALERFRASGKPVIAYADG-YSQGQYYLASAA--DEIYLNPSGSVEL  112 (222)
T ss_pred             CCeEEEEEECCCCC---------CCHHHHHHHHHHHHHHHHhCCeEEEEeCC-CCchhhhhhhhC--CEEEECCCceEEe
Confidence            34588999999999         999999999998865   45899999987 999999999998  5799999999877


Q ss_pred             eccccc-----------------CCcCC--------------hhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhC
Q 031001           84 YLPVVG-----------------RSSGP--------------VTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQ  132 (167)
Q Consensus        84 H~p~~~-----------------~~~G~--------------~~dl~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~  132 (167)
                      .-....                 ...|.              ..+-+...+.++.+.+.+.+.+++..+++.+.+++..+
T Consensus       113 iGv~~~~~~~~~ll~klGv~~~~~~~G~~K~~~~~~~~~~~s~~~r~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~  192 (222)
T cd07018         113 TGLSAETLFFKGLLDKLGVEVQVFRVGEYKSAVEPFTRDDMSPEAREQTQALLDSLWDQYLADVAASRGLSPDALEALID  192 (222)
T ss_pred             eccchhhhhHHHHHHHcCCcEEEEEEeccccccchhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence            632200                 00011              11112223456667788899999999999999988887


Q ss_pred             CCccccHHHHHHcCcceEEeCCchHHHh
Q 031001          133 RPKYMQAKEAIVYGLADKIIDSQDAAYE  160 (167)
Q Consensus       133 ~~~~lsa~EA~e~GliD~I~~~~~~~~~  160 (167)
                       ...+++++|++.||||+|. ..+++++
T Consensus       193 -~~~~~~~~A~~~GLvD~i~-~~~e~~~  218 (222)
T cd07018         193 -LGGDSAEEALEAGLVDGLA-YRDELEA  218 (222)
T ss_pred             -cCCcHHHHHHHCCCCCcCC-cHHHHHH
Confidence             7789999999999999997 4444444

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys

>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]

Probab=99.49  E-value=2.4e-13  Score=118.43  Aligned_cols=140  Identities=18%  Similarity=0.199  Sum_probs=117.5

Q ss_pred             CCCeEEEEcCCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCeEEEEc---cccccHHHHHHhcCCCCceeeecCCceeeec
Q 031001            9 SKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNC---GMAYGQAAMLLSVGAKGYRGLQPNSSTKLYL   85 (167)
Q Consensus         9 ~~~I~l~INS~G~~~~~~~~~G~v~~g~aI~~~i~~~~~~V~t~~~---G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~   85 (167)
                      ...+.|.+|+||         |-+++++.|..+|..++.||+.++.   ++|+|+|++|+++++  .-+|.|.+.+.-.+
T Consensus        57 a~~vvl~ldTPG---------Gl~~sm~~iv~~i~~s~vPV~~yv~p~ga~AaSAGtyI~m~~h--iaaMAPgT~iGaa~  125 (436)
T COG1030          57 AAAVVLELDTPG---------GLLDSMRQIVRAILNSPVPVIGYVVPDGARAASAGTYILMATH--IAAMAPGTNIGAAT  125 (436)
T ss_pred             CcEEEEEecCCC---------chHHHHHHHHHHHHcCCCCEEEEEcCCCcchhchhhHHHHhcC--hhhhCCCCcccccc
Confidence            478999999999         9999999999999999999998883   479999999999995  46899999999999


Q ss_pred             ccccCCcCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCchHHHhhhccc
Q 031001           86 PVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDAAYEKRVMI  165 (167)
Q Consensus        86 p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~~~~~~~~~~~  165 (167)
                      |...  .|+..+-+.    ..+.-..+.+-.++..|++++..+++..++.-++++||.++|+||-|-.+..|++.+.++.
T Consensus       126 Pi~~--~g~~~~~~~----~~n~~~ay~~~~A~~~gRN~~~ae~~v~~~~~l~a~eA~~~~vid~iA~~~~ell~~~~g~  199 (436)
T COG1030         126 PIAG--GGTSAKEAN----TTNAAVAYIRSLAEERGRNPTWAERFVTENLSLTAEEALRQGVIDLIARDLNELLKKLDGR  199 (436)
T ss_pred             eecC--CCCCccchh----hHHHHHHHHHHHHHHcCCChHHHHHHhhhccCCChhHHHhcCccccccCCHHHHHHHccCC
Confidence            9732  233333221    2222334556788999999999999999999999999999999999999999999988764

>PRK10949 protease 4; Provisional

Probab=99.41  E-value=7e-12  Score=114.58  Aligned_cols=139  Identities=25%  Similarity=0.270  Sum_probs=105.9

Q ss_pred             CCCCCCeEEEEcCCCCCCCCCCCCCCHHHHHHHHHHHhhc---CCCeEEEEccccccHHHHHHhcCCCCceeeecCCc--
Q 031001            6 DNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYC---KSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSS--   80 (167)
Q Consensus         6 ~~~~~~I~l~INS~G~~~~~~~~~G~v~~g~aI~~~i~~~---~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~--   80 (167)
                      .+..+.|.|.|||||         |++.+...|++.|+..   +.||++.+.+.|+|.|.+|++++  ++.++.|.+.  
T Consensus       362 D~~vkaVvLrInSpG---------Gs~~ase~i~~~i~~~r~~gKPVvas~~~~aASggY~iA~aa--d~I~a~p~t~tG  430 (618)
T PRK10949        362 DPKVKAIVLRVNSPG---------GSVTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPA--NYIVASPSTLTG  430 (618)
T ss_pred             CCCCcEEEEEecCCC---------CcHHHHHHHHHHHHHHHhcCCcEEEEECCCCccHHHHHHHhc--CEEEECCCCcee
Confidence            345689999999999         9999999999998654   57999999999999999999999  5789999766  


Q ss_pred             ----eeeeccc------cc-----CCcCC-----------hhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhCCC
Q 031001           81 ----TKLYLPV------VG-----RSSGP-----------VTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRP  134 (167)
Q Consensus        81 ----~miH~p~------~~-----~~~G~-----------~~dl~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~  134 (167)
                          ++.|.-.      ++     ...|+           ..+-+.....++..-+.+.+..++..+++.++++++. ++
T Consensus       431 SIGV~~~~~~~~~ll~klGV~~~~~~~~~~~~~~~~~~~s~e~~~~~q~~ld~~y~~F~~~Va~~R~~~~~~v~~ia-~G  509 (618)
T PRK10949        431 SIGIFGVINTVENSLDSIGVHTDGVSTSPLADVSITKALPPEFQQMMQLSIENGYKRFITLVADSRHKTPEQIDKIA-QG  509 (618)
T ss_pred             eCcEEEEccCHHHHHHhcCCceeEEeccccCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHh-cC
Confidence                3333211      00     00111           1122223356677778888999999999999998855 56


Q ss_pred             ccccHHHHHHcCcceEEeCCch
Q 031001          135 KYMQAKEAIVYGLADKIIDSQD  156 (167)
Q Consensus       135 ~~lsa~EA~e~GliD~I~~~~~  156 (167)
                      +.+++++|++.||||++..-.+
T Consensus       510 rv~tg~~A~~~GLVD~lG~~~~  531 (618)
T PRK10949        510 HVWTGQDAKANGLVDSLGDFDD  531 (618)
T ss_pred             CcccHHHHHHcCCCccCCCHHH
Confidence            7899999999999999976443

>PRK11778 putative inner membrane peptidase; Provisional

Probab=99.40  E-value=9.1e-12  Score=106.09  Aligned_cols=138  Identities=16%  Similarity=0.142  Sum_probs=94.9

Q ss_pred             CCCCCeEEEEcCCCCCCCCCCCCCCHHH---HHHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceee
Q 031001            7 NASKPIYLYINSSGTQNEKKESVGAETD---AYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKL   83 (167)
Q Consensus         7 ~~~~~I~l~INS~G~~~~~~~~~G~v~~---g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~mi   83 (167)
                      .+.+.|.|.|||||         |.+..   +......++..+.||++.+.+.|+|.|.++++++  ++.++.|.+.+..
T Consensus       121 ~~~~aVvLridSpG---------G~v~~s~~a~~~l~~lr~~~kpVva~v~~~AASggY~iAsaA--D~I~A~P~a~vGS  189 (330)
T PRK11778        121 KPGDEVLLRLESPG---------GVVHGYGLAASQLQRLRDAGIPLTVAVDKVAASGGYMMACVA--DKIIAAPFAIVGS  189 (330)
T ss_pred             cCCCeEEEEEeCCC---------CchhHHHHHHHHHHHHHhcCCCEEEEECCchhhHHHHHHHhC--CEEEECCCCeEEe
Confidence            34478999999999         99876   3344455666678999999999999999999999  5789999987532


Q ss_pred             ec-----cccc------------CCcCC------------hhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhCCC
Q 031001           84 YL-----PVVG------------RSSGP------------VTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRP  134 (167)
Q Consensus        84 H~-----p~~~------------~~~G~------------~~dl~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~  134 (167)
                      .-     |...            ...|.            ..+-+...++|+.+.+.+.+..++..+  ..++++..+ +
T Consensus       190 IGVi~~~~~~~~lLeKlGI~~evi~aG~yK~a~~pf~~~see~Re~~q~~Ld~~y~~F~~~Va~~R~--~l~~~~va~-G  266 (330)
T PRK11778        190 IGVVAQIPNFHRLLKKHDIDVELHTAGEYKRTLTLFGENTEEGREKFREELEETHQLFKDFVQRYRP--QLDIDKVAT-G  266 (330)
T ss_pred             eeeeeeccCHHHHHHHCCCceEEEEecCccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCC--cCCHHHHHh-C
Confidence            21     1100            01121            112223345667777788888887654  233444444 4


Q ss_pred             ccccHHHHHHcCcceEEeCCchHH
Q 031001          135 KYMQAKEAIVYGLADKIIDSQDAA  158 (167)
Q Consensus       135 ~~lsa~EA~e~GliD~I~~~~~~~  158 (167)
                      ..+++++|+++||||+|...++-+
T Consensus       267 ~v~~g~~Al~~GLVD~Ig~~dd~i  290 (330)
T PRK11778        267 EHWYGQQALELGLVDEIQTSDDYL  290 (330)
T ss_pred             CCcCHHHHHHCCCCCcCCCHHHHH
Confidence            567999999999999998765543

>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily

Probab=99.38  E-value=1.2e-11  Score=102.30  Aligned_cols=131  Identities=24%  Similarity=0.243  Sum_probs=94.4

Q ss_pred             CCCCCCCeEEEEcCCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeee
Q 031001            5 FDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLY   84 (167)
Q Consensus         5 ~~~~~~~I~l~INS~G~~~~~~~~~G~v~~g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH   84 (167)
                      ..++.++|.|.|+|||         |.+.++..|.+.|+.++.++++++-..|.|+|++|++++  ++-++.|+|.+.--
T Consensus        86 ~~~~~~~IdLii~TpG---------G~v~AA~~I~~~l~~~~~~v~v~VP~~A~SAGTlIALaA--DeIvM~p~a~LGpi  154 (285)
T PF01972_consen   86 EAPKDKPIDLIIHTPG---------GLVDAAEQIARALREHPAKVTVIVPHYAMSAGTLIALAA--DEIVMGPGAVLGPI  154 (285)
T ss_pred             hcCCCCceEEEEECCC---------CcHHHHHHHHHHHHhCCCCEEEEECcccccHHHHHHHhC--CeEEECCCCccCCC
Confidence            3455689999999999         999999999999999999999999999999999999999  47899999998877


Q ss_pred             cccccCCcC-------------ChhH----HHH-HHHHHHHHHHHHHHHHHHHhCCCHH---HHHhhhCC-----Ccccc
Q 031001           85 LPVVGRSSG-------------PVTD----MWR-KAKDLEANAESYIELLAKGTGKPKE---EIAKDIQR-----PKYMQ  138 (167)
Q Consensus        85 ~p~~~~~~G-------------~~~d----l~~-~~~~l~~~~~~~~~~~a~~tg~~~~---~i~~~~~~-----~~~ls  138 (167)
                      .|.++..-.             ..+|    +.. ..+.+.++++...+++.++  .+.+   +|.+.+..     |.-++
T Consensus       155 DPqi~~~pA~sil~~~~~K~~~~i~D~tlIladia~KAi~q~~~~v~~lL~~~--~~~eka~~ia~~L~~g~~tHdypi~  232 (285)
T PF01972_consen  155 DPQIGQYPAASILKAVEQKPPDEIDDQTLILADIAEKAIRQVREFVKELLKDK--MDEEKAEEIAEKLSSGKWTHDYPIT  232 (285)
T ss_pred             CccccCCChHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCCCCCCC
Confidence            776432110             0111    001 1123444444444555443  3444   44444444     45599


Q ss_pred             HHHHHHcCcc
Q 031001          139 AKEAIVYGLA  148 (167)
Q Consensus       139 a~EA~e~Gli  148 (167)
                      ++||+++||=
T Consensus       233 ~eea~~lGL~  242 (285)
T PF01972_consen  233 VEEAKELGLP  242 (285)
T ss_pred             HHHHHHcCCC
Confidence            9999999984

The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane

>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification

Probab=99.11  E-value=9.7e-10  Score=84.02  Aligned_cols=114  Identities=22%  Similarity=0.203  Sum_probs=79.7

Q ss_pred             HhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccc------------c-----CCcC----------C
Q 031001           42 MAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVV------------G-----RSSG----------P   94 (167)
Q Consensus        42 i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~------------~-----~~~G----------~   94 (167)
                      .+..+.||++++.+.++|++.+|+++|  ++.++.|.|.+...-...            +     ...|          .
T Consensus         2 ~~~~~KpV~a~~~~~~~S~~Y~lAs~a--d~I~~~p~s~vgsiGv~~~~~~~~~~l~k~GV~~~~~~~g~~K~~~~~~~~   79 (154)
T PF01343_consen    2 FKASGKPVVAYAEGYAASGAYYLASAA--DEIYANPSSSVGSIGVSAERLFFKGLLEKLGVKVEVVRSGEYKSAGFPRDP   79 (154)
T ss_dssp             HHHTT--EEEEEEEEEETHHHHHHTTS--SEEEE-TT-EEE---EEEEEEE-HHHHHHTT-EEEEEESSTTCCCCCTTSS
T ss_pred             ccccCCeEEEEECCcchhHHHHHHHcC--CEEEecCCCEEEEeChhhccccHHHHHHHCCCeEEEEecCccccccCcCCC
Confidence            467789999999999999999999998  578999998864432110            0     0011          1


Q ss_pred             --hhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCchHHH
Q 031001           95 --VTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDAAY  159 (167)
Q Consensus        95 --~~dl~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~~~~~  159 (167)
                        ..+-+...+.|+.+.+.+.+.+++..|++.++++++.+. ..|+++||+++||||+|.. .++++
T Consensus        80 ~s~~~r~~~~~~l~~~~~~f~~~Va~~R~~~~~~v~~~~~~-~~~~~~~A~~~GLiD~i~~-~~~~~  144 (154)
T PF01343_consen   80 MSEEERENLQELLDELYDQFVNDVAEGRGLSPDDVEEIADG-GVFTAQQALELGLIDEIGT-FDEAI  144 (154)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHCHHCC-HEEEHHHHHHTTSSSEETS-HHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHhh-ccccHHHHHHcCchhhcCC-HHHHH
Confidence              122233345677778889999999999999999998876 8889999999999999964 44433

; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.

>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type

Probab=98.78  E-value=1.2e-07  Score=86.59  Aligned_cols=138  Identities=17%  Similarity=0.115  Sum_probs=100.5

Q ss_pred             CCCCCCeEEEEcC-CCCCCCCCCCCCCHHHHHHHHHHHhhc---CCCeEEEEccccccHHHHHHhcCCCCceeeecCCce
Q 031001            6 DNASKPIYLYINS-SGTQNEKKESVGAETDAYAIADAMAYC---KSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSST   81 (167)
Q Consensus         6 ~~~~~~I~l~INS-~G~~~~~~~~~G~v~~g~aI~~~i~~~---~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~   81 (167)
                      .+..+.|.|.+|| ||         |.+.....|+++|+..   +.||.++..+. +|.+.+|++++  ++.++.|.+.+
T Consensus        91 D~~IkgIvL~i~~~~g---------~~~~~~~ei~~ai~~fk~sgKpVvA~~~~~-~s~~YylAs~A--D~I~~~p~G~v  158 (584)
T TIGR00705        91 DRRIEGLVFDLSNFSG---------WDSPHLVEIGSALSEFKDSGKPVYAYGTNY-SQGQYYLASFA--DEIILNPMGSV  158 (584)
T ss_pred             CCCceEEEEEccCCCC---------CCHHHHHHHHHHHHHHHhcCCeEEEEEccc-cchhhhhhhhC--CEEEECCCceE
Confidence            3445899999996 56         7888888899988754   58999987654 68899988888  57899999988


Q ss_pred             eeecccc---------------------c-------CCc-CC-hhHHHH-HHHHHHHHHHHHHHHHHHHhCCCHHHHHhh
Q 031001           82 KLYLPVV---------------------G-------RSS-GP-VTDMWR-KAKDLEANAESYIELLAKGTGKPKEEIAKD  130 (167)
Q Consensus        82 miH~p~~---------------------~-------~~~-G~-~~dl~~-~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~  130 (167)
                      .++-...                     +       ++. .+ ..+-++ ....|+.+.+.+.+..++..+++++++.+.
T Consensus       159 ~~~G~~~~~~~~k~~ldKlGV~~~v~r~G~yKsa~epf~r~~mS~e~re~~~~~l~~l~~~f~~~Va~~R~l~~~~~~~~  238 (584)
T TIGR00705       159 DLHGFYTETLFYKGMLDKLGVRWHXFRVGTYKGAVEPFSRKDMSPEARRNYQRWLGELWQNYLSSVSRNRAIPVQQLAPY  238 (584)
T ss_pred             EeeceecccccHHHHHHHcCCeEEEeeccccccccCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence            6642210                     0       010 01 122222 335667778889999999999999999988


Q ss_pred             hCCCcc-------ccHHHHHHcCcceEEeCCc
Q 031001          131 IQRPKY-------MQAKEAIVYGLADKIIDSQ  155 (167)
Q Consensus       131 ~~~~~~-------lsa~EA~e~GliD~I~~~~  155 (167)
                      .+.-.|       .++++|++.||||+|....
T Consensus       239 a~~~~~~~~~~~g~~a~~A~~~gLVD~l~~~d  270 (584)
T TIGR00705       239 AQGLLELLQKLNGDGARYALAEKLVTAVCSYA  270 (584)
T ss_pred             HhHHHHHHHhhCCchHHHHHHCCCcccCCCHH
Confidence            775444       3899999999999997543

E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.

>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily

Probab=98.66  E-value=2.8e-07  Score=71.73  Aligned_cols=105  Identities=16%  Similarity=0.173  Sum_probs=75.3

Q ss_pred             HHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCc--CChhHHHHHHHHHHHHHH
Q 031001           33 TDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSS--GPVTDMWRKAKDLEANAE  110 (167)
Q Consensus        33 ~~g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~--G~~~dl~~~~~~l~~~~~  110 (167)
                      .....++..+..++.|+.+.+.|.|.+.|+.+++++  +.|++.+++.|.+..+..+..-  |....+            
T Consensus        80 ~~~~~~~~~i~~~~~p~Ia~v~G~a~g~G~~la~~~--D~~i~~~~~~~~~pe~~~G~~p~~g~~~~l------------  145 (195)
T cd06558          80 RELQELLRALLRLPKPVIAAVNGAALGGGLELALAC--DIRIAAEDAKFGLPEVKLGLVPGGGGTQRL------------  145 (195)
T ss_pred             HHHHHHHHHHHcCCCCEEEEECCeeecHHHHHHHhC--CEEEecCCCEEechhhhcCCCCCCcHHHHH------------
Confidence            345677788888999999999999999999999998  5899999998888665533221  111111            


Q ss_pred             HHHHHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCchHHHh
Q 031001          111 SYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDAAYE  160 (167)
Q Consensus       111 ~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~~~~~~  160 (167)
                            .++.|  .....+++-....++++||+++|++|++++. +++.+
T Consensus       146 ------~~~~g--~~~a~~~~l~g~~~~a~ea~~~Glv~~~~~~-~~l~~  186 (195)
T cd06558         146 ------PRLVG--PARARELLLTGRRISAEEALELGLVDEVVPD-EELLA  186 (195)
T ss_pred             ------HHHhC--HHHHHHHHHcCCccCHHHHHHcCCCCeecCh-hHHHH
Confidence                  11112  2333444556888999999999999999986 44443

This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.

>PRK10949 protease 4; Provisional

Probab=98.55  E-value=1e-06  Score=81.03  Aligned_cols=138  Identities=17%  Similarity=0.086  Sum_probs=94.7

Q ss_pred             CCCCCCeEEEEcCCCCCCCCCCCCCCHH-HHHHHHHHHhhc---CCCeEEEEccccccHHHHHHhcCCCCceeeecCCce
Q 031001            6 DNASKPIYLYINSSGTQNEKKESVGAET-DAYAIADAMAYC---KSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSST   81 (167)
Q Consensus         6 ~~~~~~I~l~INS~G~~~~~~~~~G~v~-~g~aI~~~i~~~---~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~   81 (167)
                      .+.-+.|.|.+||||         |... ....|.++|+..   +.||+++ ...++|.+.+|++++  ++.++.|.+.+
T Consensus       110 D~rIkgivL~i~s~g---------G~~~a~~~eI~~ai~~fk~sGKpVvA~-~~~~~s~~YyLASaA--D~I~l~P~G~v  177 (618)
T PRK10949        110 DRNITGIVLDLKNFA---------GADQPSMQYIGKALREFRDSGKPVYAV-GDSYSQGQYYLASFA--NKIYLSPQGVV  177 (618)
T ss_pred             CCCceEEEEEeCCCC---------CccHHHHHHHHHHHHHHHHhCCeEEEE-ecCccchhhhhhhhC--CEEEECCCceE
Confidence            344578999999998         6544 446788877654   4789886 445568888888877  57899999988


Q ss_pred             eeeccccc----------------------------CCc-CC-hhHHHHH-HHHHHHHHHHHHHHHHHHhCCCHHHHHhh
Q 031001           82 KLYLPVVG----------------------------RSS-GP-VTDMWRK-AKDLEANAESYIELLAKGTGKPKEEIAKD  130 (167)
Q Consensus        82 miH~p~~~----------------------------~~~-G~-~~dl~~~-~~~l~~~~~~~~~~~a~~tg~~~~~i~~~  130 (167)
                      .++-....                            ++. .+ ..+-+++ ...+..+.+.+.+.+++..+++++++...
T Consensus       178 ~~~G~~~~~~~~k~lLdKlGV~~~v~r~G~yKsA~epf~r~~mS~e~Re~~~~ll~~l~~~f~~~VA~~R~l~~~~v~~~  257 (618)
T PRK10949        178 DLHGFATNGLYYKSLLDKLKVSTHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQITPQQLFPG  257 (618)
T ss_pred             EEeeeecchhhHHHHHHHcCCeEEEEEecCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence            76632210                            010 01 1122222 34567777888899999999999998643


Q ss_pred             hCC-------CccccHHHHHHcCcceEEeCCc
Q 031001          131 IQR-------PKYMQAKEAIVYGLADKIIDSQ  155 (167)
Q Consensus       131 ~~~-------~~~lsa~EA~e~GliD~I~~~~  155 (167)
                      .++       .--++|++|++.||||+|....
T Consensus       258 a~~~~~~l~~~~~~~a~~Al~~GLVD~l~~~d  289 (618)
T PRK10949        258 AQGILEGLTKVGGDTAKYALDNKLVDALASSA  289 (618)
T ss_pred             HHHHHHhhhhcCCccHHHHHHCCCCCcCCCHH
Confidence            332       1236999999999999997543

>PRK05869 enoyl-CoA hydratase; Validated

Probab=98.44  E-value=4e-06  Score=67.70  Aligned_cols=104  Identities=18%  Similarity=0.217  Sum_probs=71.0

Q ss_pred             HHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHH
Q 031001           36 YAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIEL  115 (167)
Q Consensus        36 ~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~  115 (167)
                      ..++..|..++.||.+.+.|.|.+.|..++++|  +.|++.++++|.+-...++    -.....-.            ..
T Consensus        89 ~~~~~~i~~~~kPvIAav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~G----l~p~~g~~------------~~  150 (222)
T PRK05869         89 QQAVDAVAAIPKPTVAAITGYALGAGLTLALAA--DWRVSGDNVKFGATEILAG----LAPSGDGM------------AR  150 (222)
T ss_pred             HHHHHHHHhCCCCEEEEEcCEeecHHHHHHHhC--CEEEecCCCEEcCchhccC----CCCCccHH------------HH
Confidence            346778889999999999999999999999999  5799999988766333322    11111000            00


Q ss_pred             HHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCchHHHh
Q 031001          116 LAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDAAYE  160 (167)
Q Consensus       116 ~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~~~~~~  160 (167)
                      +.+..|  .....+++-...+++++||+++||+|+|.++. ++.+
T Consensus       151 l~~~ig--~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~-~l~~  192 (222)
T PRK05869        151 LTRAAG--PSRAKELVFSGRFFDAEEALALGLIDEMVAPD-DVYD  192 (222)
T ss_pred             HHHHhC--HHHHHHHHHcCCCcCHHHHHHCCCCCEeeCch-HHHH
Confidence            111122  23334555567799999999999999998754 4443

>COG3904 Predicted periplasmic protein [Function unknown]

Probab=98.43  E-value=1.4e-06  Score=69.84  Aligned_cols=121  Identities=13%  Similarity=0.140  Sum_probs=90.5

Q ss_pred             EEEcCCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcC
Q 031001           14 LYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSG   93 (167)
Q Consensus        14 l~INS~G~~~~~~~~~G~v~~g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G   93 (167)
                      +.+||||         |++..++++-..|+..+-.+..--..+|+|+..++|++|.  .|++.|.+.+.+|||..  ..+
T Consensus       109 v~lnSpG---------Gsv~kA~~mgkLiRe~gfdt~v~s~A~CasaCpl~fagGv--rRvve~~ayiGVHq~~~--~g~  175 (245)
T COG3904         109 VTLNSPG---------GSVAKACSMGKLIREDGFDTAVDSGAMCASACPLMFAGGV--RRVVEDFAYIGVHQITT--TGR  175 (245)
T ss_pred             EEecCCC---------CcHHHHHhhhhhhhhcccCccccchhhhhccchhhhhcce--eeeecccceeeeeeccc--cCC
Confidence            6789999         9999999999999998887777778899999999999994  79999999999999973  222


Q ss_pred             C--hhHHHHHHHHHHH-HHHHHHHHHHHHhCCCHHHHHhhhCCC----ccccHHHHHHcCcceE
Q 031001           94 P--VTDMWRKAKDLEA-NAESYIELLAKGTGKPKEEIAKDIQRP----KYMQAKEAIVYGLADK  150 (167)
Q Consensus        94 ~--~~dl~~~~~~l~~-~~~~~~~~~a~~tg~~~~~i~~~~~~~----~~lsa~EA~e~GliD~  150 (167)
                      .  ....  ++..... .-.+ ...|....|.++.-+..+.+.|    ++++.+|-.++.|..+
T Consensus       176 ~~r~~~~--~a~Sanq~~tar-~a~ylrEMgigpgLlq~ml~tpp~dir~l~~kem~~~~L~t~  236 (245)
T COG3904         176 RERIVNG--KAKSANQKVTAR-LAAYLREMGIGPGLLQMMLATPPSDIRQLGLKEMTAMKLVTS  236 (245)
T ss_pred             ccccCcH--hhhhhhhhhHHH-HHHHHHHcCCCHHHHHHHhcCChHhhhhhhHHHHhhhccccc
Confidence            2  1121  1111111 1112 3357777888887777666544    7899999999988764

>PRK08258 enoyl-CoA hydratase; Provisional

Probab=98.41  E-value=4.4e-06  Score=69.41  Aligned_cols=99  Identities=17%  Similarity=0.261  Sum_probs=69.7

Q ss_pred             HHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHH
Q 031001           37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELL  116 (167)
Q Consensus        37 aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~  116 (167)
                      .++..|..++.||.+.+.|.|.+.|+-++++|  +-|++.++++|.+....++..-+..--..    .|           
T Consensus       104 ~~~~~l~~~~kPvIAaV~G~a~GgG~~Lalac--D~ria~~~a~f~~pe~~~Gl~p~~~g~~~----~l-----------  166 (277)
T PRK08258        104 DLVKAMRACPQPIIAAVDGVCAGAGAILAMAS--DLRLGTPSAKTAFLFTRVGLAGADMGACA----LL-----------  166 (277)
T ss_pred             HHHHHHHhCCCCEEEEECCeeehHHHHHHHhC--CEEEecCCCEEeccccccCcCCCCchHHH----HH-----------
Confidence            56778889999999999999999999999999  57999999988875554332211100000    01           


Q ss_pred             HHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCC
Q 031001          117 AKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDS  154 (167)
Q Consensus       117 a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~  154 (167)
                      .+..  ......+++-....++++||+++||||+|.+.
T Consensus       167 ~~~v--G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~  202 (277)
T PRK08258        167 PRII--GQGRASELLYTGRSMSAEEGERWGFFNRLVEP  202 (277)
T ss_pred             HHHh--CHHHHHHHHHcCCCCCHHHHHHcCCCcEecCH
Confidence            1111  12223445556778999999999999999875

>PRK06213 enoyl-CoA hydratase; Provisional

Probab=98.32  E-value=8.1e-06  Score=65.94  Aligned_cols=104  Identities=15%  Similarity=0.193  Sum_probs=69.5

Q ss_pred             HHHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecC-CceeeecccccCCcCChhHHHHHHHHHHHHHHHHH
Q 031001           35 AYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPN-SSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYI  113 (167)
Q Consensus        35 g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~-s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~  113 (167)
                      ...++..|..++.||.+.+.|.|.+.|+.++++|  +.|++.++ ++|.+-...++.   .+....  . .+        
T Consensus        80 ~~~l~~~l~~~~kPvIAav~G~a~GgG~~lal~~--D~rva~~~~a~f~~pe~~~Gl---~~~~~~--~-~~--------  143 (229)
T PRK06213         80 GSTLARRLLSHPKPVIVACTGHAIAKGAFLLLSA--DYRIGVHGPFKIGLNEVAIGM---TMPHAA--I-EL--------  143 (229)
T ss_pred             HHHHHHHHHcCCCCEEEEEcCeeeHHHHHHHHhC--CeeeEecCCcEEECchhhhCC---cCChHH--H-HH--------
Confidence            3456677888999999999999999999999999  57999998 877663222111   111110  0 00        


Q ss_pred             HHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCchHHH
Q 031001          114 ELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDAAY  159 (167)
Q Consensus       114 ~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~~~~~  159 (167)
                        +.++.|  .....+++-....++|+||+++||||+|.++ +++.
T Consensus       144 --l~~~~g--~~~a~~lll~g~~~~a~eA~~~Glv~~vv~~-~~l~  184 (229)
T PRK06213        144 --ARDRLT--PSAFQRAVINAEMFDPEEAVAAGFLDEVVPP-EQLL  184 (229)
T ss_pred             --HHHHcC--HHHHHHHHHcCcccCHHHHHHCCCceeccCh-HHHH
Confidence              111111  1233445567778999999999999999864 4443

>PRK06142 enoyl-CoA hydratase; Provisional

Probab=98.30  E-value=6e-06  Score=68.35  Aligned_cols=103  Identities=21%  Similarity=0.239  Sum_probs=70.4

Q ss_pred             HHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHH
Q 031001           37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELL  116 (167)
Q Consensus        37 aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~  116 (167)
                      .+++.|..++.||.+.+.|.|.+.|.-++++|  +-|++.++++|.+-...++..    .+....            ..+
T Consensus       100 ~~~~~i~~~~kpvIAav~G~a~GgG~~lalac--D~~ia~~~a~f~~pe~~~Gl~----p~~g~~------------~~l  161 (272)
T PRK06142        100 AAINAVADCRKPVIAAVQGWCIGGGVDLISAC--DMRYASADAKFSVREVDLGMV----ADVGSL------------QRL  161 (272)
T ss_pred             HHHHHHHhCCCCEEEEecCccccchHHHHHhC--CEEEecCCCeecchhhhhCCC----CCchHH------------HHH
Confidence            45677888999999999999999999999999  479999999876643332222    111100            001


Q ss_pred             HHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCchHHH
Q 031001          117 AKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDAAY  159 (167)
Q Consensus       117 a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~~~~~  159 (167)
                      .+..|  .....+++-...-++++||+++||||+|.++.+++.
T Consensus       162 ~~~~G--~~~a~~l~l~g~~~~a~eA~~~GLv~~vv~~~~~l~  202 (272)
T PRK06142        162 PRIIG--DGHLRELALTGRDIDAAEAEKIGLVNRVYDDADALL  202 (272)
T ss_pred             HHHhC--HHHHHHHHHhCCCcCHHHHHHcCCccEecCCHHHHH
Confidence            11112  223344455567799999999999999998644444

>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix

Probab=98.30  E-value=7.4e-06  Score=66.48  Aligned_cols=104  Identities=15%  Similarity=0.162  Sum_probs=70.4

Q ss_pred             HHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHH
Q 031001           33 TDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESY  112 (167)
Q Consensus        33 ~~g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~  112 (167)
                      .....++..|..++.|+.+.+.|.|.+.|+-+++++  +.|++.+++.|.+-...++..-+-. -..    .+   .+.+
T Consensus        77 ~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lala~--D~~ia~~~a~f~~pe~~~G~~p~~g-~~~----~l---~r~~  146 (245)
T PF00378_consen   77 RRFQELLSRLANFPKPTIAAVNGHAVGGGFELALAC--DFRIAAEDAKFGFPEVRLGIFPGAG-GTF----RL---PRLI  146 (245)
T ss_dssp             HHHHHHHHHHHHSSSEEEEEESSEEETHHHHHHHHS--SEEEEETTTEEETGGGGGTSSSTST-HHH----HH---HHHH
T ss_pred             hhhccccccchhhhhheeeccccccccccccccccc--ceEEeecccceeeeecccCcccccc-ccc----cc---ceee
Confidence            445678889999999999999999999999999999  5899999998655333222111111 110    01   1111


Q ss_pred             HHHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCch
Q 031001          113 IELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQD  156 (167)
Q Consensus       113 ~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~~  156 (167)
                              |  .....+++-....++|+||+++||||+|+++.+
T Consensus       147 --------g--~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~  180 (245)
T PF00378_consen  147 --------G--PSRARELLLTGEPISAEEALELGLVDEVVPDEE  180 (245)
T ss_dssp             --------H--HHHHHHHHHHTCEEEHHHHHHTTSSSEEESGGG
T ss_pred             --------e--cccccccccccccchhHHHHhhcceeEEcCchh
Confidence                    1  111123333456789999999999999998765

Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....

>PRK06210 enoyl-CoA hydratase; Provisional

Probab=98.29  E-value=5.6e-06  Score=68.47  Aligned_cols=98  Identities=11%  Similarity=0.035  Sum_probs=70.6

Q ss_pred             HHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHH
Q 031001           37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELL  116 (167)
Q Consensus        37 aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~  116 (167)
                      .++..|..++.||.+.+.|.|.+.|.-|+++|  +-|++.++++|.+..+.++..-+-..-.     .+-          
T Consensus        99 ~~~~~l~~~~kPvIaav~G~a~GgG~~lala~--D~~ia~~~a~f~~pe~~~Gl~p~~g~~~-----~l~----------  161 (272)
T PRK06210         99 TRYHFLTALRKPVIAAINGACAGIGLTHALMC--DVRFAADGAKFTTAFARRGLIAEHGISW-----ILP----------  161 (272)
T ss_pred             HHHHHHHhCCCCEEEEECCeeehHHHHHHHhC--CEEEEeCCCEEechHHhcCCCCCCchhh-----hhH----------
Confidence            34677889999999999999999999999999  5799999999988655533221111000     000          


Q ss_pred             HHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCC
Q 031001          117 AKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDS  154 (167)
Q Consensus       117 a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~  154 (167)
                       +.  .......+++-....++|+||+++||||+|.++
T Consensus       162 -~~--ig~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~  196 (272)
T PRK06210        162 -RL--VGHANALDLLLSARTFYAEEALRLGLVNRVVPP  196 (272)
T ss_pred             -hh--hCHHHHHHHHHcCCccCHHHHHHcCCcceecCH
Confidence             01  123445566667788899999999999999865

>PRK09674 enoyl-CoA hydratase-isomerase; Provisional

Probab=98.26  E-value=1.1e-05  Score=66.15  Aligned_cols=100  Identities=14%  Similarity=0.105  Sum_probs=70.2

Q ss_pred             HHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHH
Q 031001           36 YAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIEL  115 (167)
Q Consensus        36 ~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~  115 (167)
                      ..++..|..++.||.+.+.|.|.+.|+-++++|  +.|++.++++|.+-...++.    ..+..-            ...
T Consensus        82 ~~~~~~l~~~~kPvIAav~G~a~GgG~~lalac--D~~ia~~~a~f~~pe~~~Gl----~p~~g~------------~~~  143 (255)
T PRK09674         82 PQLWQRLQAFNKPLIAAVNGYALGAGCELALLC--DIVIAGENARFGLPEITLGI----MPGAGG------------TQR  143 (255)
T ss_pred             HHHHHHHHhCCCCEEEEECCEeehHHHHHHHhC--CEEEecCCCEEeCchhhcCC----CCCccH------------HHH
Confidence            346778889999999999999999999999999  57999999988764433222    111100            001


Q ss_pred             HHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001          116 LAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ  155 (167)
Q Consensus       116 ~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~  155 (167)
                      +.+..|  ...-.+++-....|+++||+++||||+|.++.
T Consensus       144 l~~~ig--~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~  181 (255)
T PRK09674        144 LIRSVG--KSLASQMVLTGESITAQQAQQAGLVSEVFPPE  181 (255)
T ss_pred             HHHHhC--HHHHHHHHHcCCccCHHHHHHcCCCcEecChH
Confidence            112222  23334555567779999999999999998654

>PRK06495 enoyl-CoA hydratase; Provisional

Probab=98.26  E-value=8.1e-06  Score=67.07  Aligned_cols=95  Identities=16%  Similarity=0.054  Sum_probs=70.2

Q ss_pred             HHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHH
Q 031001           37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELL  116 (167)
Q Consensus        37 aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~  116 (167)
                      .++..|..++.||.+.+.|.|.+.|.-++++|  +-|++.++++|.+-...++.. |...-                  +
T Consensus        88 ~~~~~l~~~~kPvIAav~G~a~GgG~~lalac--D~~ia~~~a~f~~pe~~~Gl~-~~~~~------------------l  146 (257)
T PRK06495         88 ECFHAIRECAKPVIAAVNGPALGAGLGLVASC--DIIVASENAVFGLPEIDVGLA-GGGKH------------------A  146 (257)
T ss_pred             HHHHHHHhCCCCEEEEECCeeehhHHHHHHhC--CEEEecCCCEeeChhhccCcc-ccHHH------------------H
Confidence            46677889999999999999999999999999  579999999887744432222 21100                  1


Q ss_pred             HHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCC
Q 031001          117 AKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDS  154 (167)
Q Consensus       117 a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~  154 (167)
                      .+..  ......+++-....++++||+++||||+|.++
T Consensus       147 ~~~~--g~~~a~~lll~g~~~~a~eA~~~GLv~~vv~~  182 (257)
T PRK06495        147 MRLF--GHSLTRRMMLTGYRVPAAELYRRGVIEACLPP  182 (257)
T ss_pred             HHHh--CHHHHHHHHHcCCeeCHHHHHHcCCcceecCH
Confidence            1122  23445566667888999999999999999874

>PRK03580 carnitinyl-CoA dehydratase; Provisional

Probab=98.25  E-value=1.5e-05  Score=65.70  Aligned_cols=99  Identities=21%  Similarity=0.250  Sum_probs=68.0

Q ss_pred             HHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHH
Q 031001           36 YAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIEL  115 (167)
Q Consensus        36 ~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~  115 (167)
                      ..++..|..++.||.+.+.|.|.+.|.-++++|  +-|++.++++|.+  |..  ..|-..+..... .|   -      
T Consensus        84 ~~~~~~l~~~~kPvIaav~G~a~GgG~~lalac--D~~ia~~~a~f~~--pe~--~~G~~p~~g~~~-~l---~------  147 (261)
T PRK03580         84 FAGLTEIFDLDKPVIAAVNGYAFGGGFELALAA--DFIVCADNASFAL--PEA--KLGIVPDSGGVL-RL---P------  147 (261)
T ss_pred             hHHHHHHHhCCCCEEEEECCeeehHHHHHHHHC--CEEEecCCCEEeC--ccc--ccCcCCCccHHH-HH---H------
Confidence            345677888999999999999999999999999  5799999998765  442  122222211000 01   1      


Q ss_pred             HHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCC
Q 031001          116 LAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDS  154 (167)
Q Consensus       116 ~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~  154 (167)
                        +..  ......+++-....++++||+++||||+|.++
T Consensus       148 --~~v--g~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~  182 (261)
T PRK03580        148 --KRL--PPAIANEMVMTGRRMDAEEALRWGIVNRVVPQ  182 (261)
T ss_pred             --HHh--CHHHHHHHHHhCCccCHHHHHHcCCCcEecCH
Confidence              111  22333444555678999999999999999875

>PRK08150 enoyl-CoA hydratase; Provisional

Probab=98.24  E-value=1.6e-05  Score=65.37  Aligned_cols=100  Identities=17%  Similarity=0.168  Sum_probs=68.4

Q ss_pred             HHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHH
Q 031001           36 YAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIEL  115 (167)
Q Consensus        36 ~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~  115 (167)
                      ..++..|..++.||.+.+.|.|.+.|.-++++|  +-|++.++++|.+  |..  ..|-..+..... .           
T Consensus        82 ~~~~~~l~~~~kPvIaav~G~a~GgG~~lalac--D~~ia~~~a~f~~--pe~--~~Gl~p~~g~~~-~-----------  143 (255)
T PRK08150         82 HRVFDKIQYGRVPVIAALHGAVVGGGLELASAA--HIRVADESTYFAL--PEG--QRGIFVGGGGSV-R-----------  143 (255)
T ss_pred             HHHHHHHHhCCCCEEEEECCEEEcHHHHHHHhC--CEEEEeCCCEEec--ccc--ccCCCCCccHHH-H-----------
Confidence            346777888999999999999999999999999  5799999998766  442  112211110000 0           


Q ss_pred             HHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001          116 LAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ  155 (167)
Q Consensus       116 ~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~  155 (167)
                      +.+..|  .....+++-....|+++||+++||||+|.+..
T Consensus       144 l~~~iG--~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~  181 (255)
T PRK08150        144 VPRLIG--VARMTDMMLTGRVYDAQEGERLGLAQYLVPAG  181 (255)
T ss_pred             HHHHhC--HHHHHHHHHcCCcCCHHHHHHcCCccEeeCch
Confidence            111112  22234445556779999999999999998864

>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated

Probab=98.24  E-value=1.3e-05  Score=65.58  Aligned_cols=104  Identities=14%  Similarity=0.070  Sum_probs=72.7

Q ss_pred             HHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHH
Q 031001           36 YAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIEL  115 (167)
Q Consensus        36 ~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~  115 (167)
                      ..++..|..++.||.+.+.|.|.+.|..+.++|  +-|++.+++.|.+....+    |-..+..-  ..          .
T Consensus        84 ~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~c--D~~ia~~~a~f~~pe~~~----Gl~p~~g~--~~----------~  145 (249)
T PRK07110         84 ANLYSLALNCPIPVIAAMQGHAIGGGLVLGLYA--DIVVLSRESVYTANFMKY----GFTPGMGA--TA----------I  145 (249)
T ss_pred             HHHHHHHHcCCCCEEEEecCceechHHHHHHhC--CEEEEeCCCEecCchhcc----CCCCCchH--HH----------H
Confidence            357788889999999999999999999999999  579999999876533322    22112110  00          0


Q ss_pred             HHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCchHHHh
Q 031001          116 LAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDAAYE  160 (167)
Q Consensus       116 ~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~~~~~~  160 (167)
                      +.++.  ......+++-...-|+++||+++||||+|.++ +++.+
T Consensus       146 l~~~~--g~~~a~~llltg~~~~a~eA~~~Glv~~vv~~-~~l~~  187 (249)
T PRK07110        146 LPEKL--GLALGQEMLLTARYYRGAELKKRGVPFPVLPR-AEVLE  187 (249)
T ss_pred             HHHHh--CHHHHHHHHHcCCccCHHHHHHcCCCeEEeCh-HHHHH
Confidence            11111  23445666777888999999999999999874 34433

>PRK06688 enoyl-CoA hydratase; Provisional

Probab=98.24  E-value=1.1e-05  Score=66.09  Aligned_cols=100  Identities=17%  Similarity=0.127  Sum_probs=68.4

Q ss_pred             HHHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHH
Q 031001           35 AYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIE  114 (167)
Q Consensus        35 g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~  114 (167)
                      ...+++.|..++.||.+.+.|.|.+.|.-++++|  +.|++.++++|.+....++..-+-.. ..    .+         
T Consensus        85 ~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lal~c--D~ria~~~a~f~~pe~~~G~~p~~g~-~~----~l---------  148 (259)
T PRK06688         85 VNRFLRAIAALPKPVVAAVNGPAVGVGVSLALAC--DLVYASESAKFSLPFAKLGLCPDAGG-SA----LL---------  148 (259)
T ss_pred             HHHHHHHHHcCCCCEEEEECCeeecHHHHHHHhC--CEEEecCCCEecCchhhcCCCCCcch-hh----HH---------
Confidence            3567788889999999999999999999999999  57999999988775443322111100 00    01         


Q ss_pred             HHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCC
Q 031001          115 LLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDS  154 (167)
Q Consensus       115 ~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~  154 (167)
                        .+..|  .....+++-....++++||+++||||+|.++
T Consensus       149 --~~~~G--~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~  184 (259)
T PRK06688        149 --PRLIG--RARAAEMLLLGEPLSAEEALRIGLVNRVVPA  184 (259)
T ss_pred             --HHHhh--HHHHHHHHHhCCccCHHHHHHcCCcceecCH
Confidence              11111  1222333444567999999999999999875

>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase

Probab=98.23  E-value=1.3e-05  Score=66.59  Aligned_cols=102  Identities=13%  Similarity=0.117  Sum_probs=70.0

Q ss_pred             HHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHH
Q 031001           37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELL  116 (167)
Q Consensus        37 aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~  116 (167)
                      .+++.|..++.||.+.+.|.|.+.|.-|+++|  +-|++.++++|.+-...+    |-..+....    ..        +
T Consensus       102 ~~~~~l~~~~kPvIaav~G~a~GgG~~lal~c--D~~ia~~~a~f~~pe~~~----Gl~p~~g~~----~~--------l  163 (275)
T PLN02664        102 DAITAIEQCRKPVIAAIHGACIGGGVDIVTAC--DIRYCSEDAFFSVKEVDL----AITADLGTL----QR--------L  163 (275)
T ss_pred             HHHHHHHhCCCCEEEEECCccccchHHHHHhC--CEEEecCCCEeccHHHhh----CCCCCccHH----HH--------H
Confidence            45677888999999999999999999999999  579999999887733332    221121100    00        1


Q ss_pred             HHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCchHH
Q 031001          117 AKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDAA  158 (167)
Q Consensus       117 a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~~~~  158 (167)
                      .+..  ......+++-....++++||+++||||+|.++.+++
T Consensus       164 ~~~v--G~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~~l  203 (275)
T PLN02664        164 PSIV--GYGNAMELALTGRRFSGSEAKELGLVSRVFGSKEDL  203 (275)
T ss_pred             HHHh--CHHHHHHHHHhCCCCCHHHHHHcCCCceeeCChhHH
Confidence            1111  222334555567789999999999999998754443

>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]

Probab=98.23  E-value=1.2e-05  Score=65.97  Aligned_cols=104  Identities=19%  Similarity=0.170  Sum_probs=72.7

Q ss_pred             HHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHH
Q 031001           37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELL  116 (167)
Q Consensus        37 aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~  116 (167)
                      .+...|+.++.||.+.+.|.|.+.|+-++++|  +-|++.++++|.+-...++-.-|...-     ..+.+.        
T Consensus        89 ~~~~~l~~~~kPvIAav~G~a~GgG~eLal~~--D~ria~~~a~f~~pe~~iGl~Pg~g~~-----~~l~r~--------  153 (257)
T COG1024          89 DLLRALADLPKPVIAAVNGYALGGGLELALAC--DIRIAAEDAKFGLPEVNLGLLPGDGGT-----QRLPRL--------  153 (257)
T ss_pred             HHHHHHHhCCCCEEEEEcceEeechhhhhhcC--CeEEecCCcEecCcccccccCCCCcHH-----HHHHHh--------
Confidence            37789999999999999999999999999999  479999999988855543322221100     011111        


Q ss_pred             HHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCchHHHh
Q 031001          117 AKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDAAYE  160 (167)
Q Consensus       117 a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~~~~~~  160 (167)
                         .|  ...-.+++-....++++||+++||||++.+..+++.+
T Consensus       154 ---~G--~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~~l~~  192 (257)
T COG1024         154 ---LG--RGRAKELLLTGEPISAAEALELGLVDEVVPDAEELLE  192 (257)
T ss_pred             ---cC--HHHHHHHHHcCCcCCHHHHHHcCCcCeeeCCHHHHHH
Confidence               11  1111225556788999999999999999886544443

>PRK06144 enoyl-CoA hydratase; Provisional

Probab=98.21  E-value=1.1e-05  Score=66.42  Aligned_cols=103  Identities=17%  Similarity=0.274  Sum_probs=70.1

Q ss_pred             HHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHH
Q 031001           37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELL  116 (167)
Q Consensus        37 aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~  116 (167)
                      .++..|..++.||.+.+.|.|.+.|.-++++|  +-|++.+++.|.+  |.. ...|-.......    .        .+
T Consensus        93 ~~~~~l~~~~kPvIaav~G~a~GgG~~lala~--D~~ia~~~a~f~~--pe~-~~~G~~p~~g~~----~--------~l  155 (262)
T PRK06144         93 RVLGALEQLRVPTIAAIAGACVGGGAAIAAAC--DLRIATPSARFGF--PIA-RTLGNCLSMSNL----A--------RL  155 (262)
T ss_pred             HHHHHHHhCCCCEEEEECCeeeehHHHHHHhC--CEEEecCCCEeec--hhH-HhccCCCCccHH----H--------HH
Confidence            45667788899999999999999999999999  5799999998765  331 011221111000    0        11


Q ss_pred             HHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCchHHH
Q 031001          117 AKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDAAY  159 (167)
Q Consensus       117 a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~~~~~  159 (167)
                      .+..|  .....+++-....++++||+++||||+|+++ +++.
T Consensus       156 ~~~vG--~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~  195 (262)
T PRK06144        156 VALLG--AARVKDMLFTARLLEAEEALAAGLVNEVVED-AALD  195 (262)
T ss_pred             HHHhC--HHHHHHHHHcCCCcCHHHHHHcCCcCeecCH-HHHH
Confidence            22222  2334455667788999999999999999876 3443

>PRK05981 enoyl-CoA hydratase; Provisional

Probab=98.21  E-value=9.8e-06  Score=66.79  Aligned_cols=99  Identities=13%  Similarity=0.079  Sum_probs=69.4

Q ss_pred             HHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHH
Q 031001           37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELL  116 (167)
Q Consensus        37 aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~  116 (167)
                      .++..|..++.||.+.+.|.|.+.|.-+.++|  +-|++.+++.|.+..+.++..-+-..-      .+  +.       
T Consensus        94 ~~~~~l~~~~kpvIaav~G~a~GgG~~lalac--D~~ia~~~a~f~~~e~~lG~~p~~g~~------~~--l~-------  156 (266)
T PRK05981         94 PFLRRLRNLPCPIVTAVNGPAAGVGMSFALMG--DLILCARSAYFLQAFRRIGLVPDGGST------WL--LP-------  156 (266)
T ss_pred             HHHHHHHhCCCCEEEEECCEeehHHHHHHHhC--CEEEecCCCEEechHhhcCCCCCccHH------HH--HH-------
Confidence            46678889999999999999999999999999  579999999988765553322111100      00  01       


Q ss_pred             HHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001          117 AKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ  155 (167)
Q Consensus       117 a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~  155 (167)
                       +..  ......+++-....|+++||+++||||+|.+..
T Consensus       157 -~~v--g~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~  192 (266)
T PRK05981        157 -RLV--GKARAMELSLLGEKLPAETALQWGLVNRVVDDA  192 (266)
T ss_pred             -HHh--HHHHHHHHHHhCCCcCHHHHHHcCCceEeeCHh
Confidence             111  122234445556779999999999999998754

>PLN02888 enoyl-CoA hydratase

Probab=98.20  E-value=2.3e-05  Score=64.84  Aligned_cols=99  Identities=11%  Similarity=0.069  Sum_probs=67.1

Q ss_pred             HHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHH
Q 031001           37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELL  116 (167)
Q Consensus        37 aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~  116 (167)
                      .++..|..++.||.+.+.|.|.+.|..++++|  +.|++.+++.|.+=...++    -..+....            ..+
T Consensus        90 ~~~~~i~~~~kPvIaav~G~a~GgG~~lal~c--D~ria~~~a~f~~pe~~~G----l~p~~g~~------------~~l  151 (265)
T PLN02888         90 DPVAQMERCRKPIIGAINGFAITAGFEIALAC--DILVASRGAKFIDTHAKFG----IFPSWGLS------------QKL  151 (265)
T ss_pred             HHHHHHHhCCCCEEEEECCeeechHHHHHHhC--CEEEecCCCEecCcccccc----CCCCccHh------------hHH
Confidence            45667888999999999999999999999999  5799999998866322222    11111000            001


Q ss_pred             HHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001          117 AKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ  155 (167)
Q Consensus       117 a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~  155 (167)
                      .+..|  .....+++-....|+++||+++||||+|.+..
T Consensus       152 ~~~vG--~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~  188 (265)
T PLN02888        152 SRIIG--ANRAREVSLTAMPLTAETAERWGLVNHVVEES  188 (265)
T ss_pred             HHHhC--HHHHHHHHHhCCccCHHHHHHcCCccEeeChH
Confidence            11111  22233444456688999999999999998753

>PRK09245 enoyl-CoA hydratase; Provisional

Probab=98.20  E-value=1e-05  Score=66.68  Aligned_cols=99  Identities=17%  Similarity=0.109  Sum_probs=67.5

Q ss_pred             HHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHH
Q 031001           37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELL  116 (167)
Q Consensus        37 aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~  116 (167)
                      .++..|..++.||.+.+.|.|.+.|.-++++|  +-|++.++++|.+-...++..    .+..-.  .          .+
T Consensus        94 ~~~~~l~~~~kpvIaav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~G~~----p~~g~~--~----------~l  155 (266)
T PRK09245         94 RIPLALYNLEVPVIAAVNGPAIGAGCDLACMC--DIRIASETARFAESFVKLGLI----PGDGGA--W----------LL  155 (266)
T ss_pred             HHHHHHHcCCCCEEEEECCEeecHHHHHHHhC--CEEEecCCCEEcccccccCcC----CCcchh--h----------hH
Confidence            35667888999999999999999999999999  579999999887643332221    111000  0          01


Q ss_pred             HHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001          117 AKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ  155 (167)
Q Consensus       117 a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~  155 (167)
                      .+..|  .....+++-....|+++||+++||||+|.+..
T Consensus       156 ~~~vG--~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~  192 (266)
T PRK09245        156 PRIIG--MARAAEMAFTGDAIDAATALEWGLVSRVVPAD  192 (266)
T ss_pred             HHHhh--HHHHHHHHHcCCCcCHHHHHHcCCcceecCHH
Confidence            11111  12233445556789999999999999998753

>PRK06190 enoyl-CoA hydratase; Provisional

Probab=98.20  E-value=2.9e-05  Score=64.05  Aligned_cols=99  Identities=12%  Similarity=0.023  Sum_probs=69.6

Q ss_pred             HHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHH
Q 031001           36 YAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIEL  115 (167)
Q Consensus        36 ~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~  115 (167)
                      ..++..|..++.||.+.+.|.|.+.|.-++++|  +.|++.++++|.+  |..  ..|-..+..- .           ..
T Consensus        84 ~~~~~~i~~~~kPvIAaV~G~a~GgG~~lalac--D~~ia~~~a~f~~--pe~--~~Gl~p~~g~-~-----------~~  145 (258)
T PRK06190         84 PNPSPAWPAMRKPVIGAINGAAVTGGLELALAC--DILIASERARFAD--THA--RVGILPGWGL-S-----------VR  145 (258)
T ss_pred             HHHHHHHHhCCCCEEEEECCEeecHHHHHHHhC--CEEEEeCCCEEEC--ccc--ccCcCCCccH-H-----------HH
Confidence            356778999999999999999999999999999  5799999998865  431  1122212100 0           01


Q ss_pred             HHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCC
Q 031001          116 LAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDS  154 (167)
Q Consensus       116 ~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~  154 (167)
                      +.+.-|  .....+++-....++|+||+++||||+|.++
T Consensus       146 l~r~vG--~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~  182 (258)
T PRK06190        146 LPQKVG--IGRARRMSLTGDFLDAADALRAGLVTEVVPH  182 (258)
T ss_pred             HHHHhC--HHHHHHHHHhCCccCHHHHHHcCCCeEecCH
Confidence            111112  3344455666778999999999999999874

>PRK06143 enoyl-CoA hydratase; Provisional

Probab=98.20  E-value=2.1e-05  Score=64.67  Aligned_cols=98  Identities=18%  Similarity=0.202  Sum_probs=69.9

Q ss_pred             HHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHH
Q 031001           36 YAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIEL  115 (167)
Q Consensus        36 ~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~  115 (167)
                      ..+++.|..++.||.+.+.|.|.+.|.-+.++|  +-|++.++++|.+  |..  ..|-+....   .          ..
T Consensus        90 ~~~~~~l~~~~kPvIAav~G~a~GgG~~lalac--D~~ia~~~a~f~~--pe~--~~G~p~~~~---~----------~~  150 (256)
T PRK06143         90 RDLCDAVRHFPVPVIARIPGWCLGGGLELAAAC--DLRIAAHDAQFGM--PEV--RVGIPSVIH---A----------AL  150 (256)
T ss_pred             HHHHHHHHhCCCCEEEEECCEEeehhHHHHHhC--CEEEecCCCEEeC--Ccc--ccCCCCccH---H----------HH
Confidence            346777888999999999999999999999999  5799999998876  431  112221110   0          01


Q ss_pred             HHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCC
Q 031001          116 LAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDS  154 (167)
Q Consensus       116 ~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~  154 (167)
                      +.+..|  .....+++-....++|+||+++||||+|+++
T Consensus       151 l~~~iG--~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~  187 (256)
T PRK06143        151 LPRLIG--WARTRWLLLTGETIDAAQALAWGLVDRVVPL  187 (256)
T ss_pred             HHHhcC--HHHHHHHHHcCCcCCHHHHHHCCCcCeecCH
Confidence            222222  2344555667788999999999999999875

>PRK07511 enoyl-CoA hydratase; Provisional

Probab=98.19  E-value=1.9e-05  Score=64.82  Aligned_cols=100  Identities=15%  Similarity=0.079  Sum_probs=70.2

Q ss_pred             HHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHH
Q 031001           36 YAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIEL  115 (167)
Q Consensus        36 ~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~  115 (167)
                      ..++..|..++.||.+.+.|.|.+.|..+++++  +.|++.++++|.+....++..    .+..-.. .           
T Consensus        88 ~~~~~~l~~~~kpvIAav~G~a~GgG~~lala~--D~~ia~~~a~f~~pe~~~Gl~----p~~g~~~-~-----------  149 (260)
T PRK07511         88 HDWIRAIRAFPKPVIAAVEGAAAGAGFSLALAC--DLLVAARDAKFVMAYVKVGLT----PDGGGSW-F-----------  149 (260)
T ss_pred             HHHHHHHHcCCCCEEEEECCeeehHHHHHHHhC--CEEEeeCCCEEeccccccCcC----CCchHHH-H-----------
Confidence            346677888999999999999999999999999  579999999887743332221    1110000 0           


Q ss_pred             HHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001          116 LAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ  155 (167)
Q Consensus       116 ~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~  155 (167)
                      +.+..  ......+++-....|+++||+++||||+|.++.
T Consensus       150 l~~~v--g~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~  187 (260)
T PRK07511        150 LARAL--PRQLATELLLEGKPISAERLHALGVVNRLAEPG  187 (260)
T ss_pred             HHHHh--CHHHHHHHHHhCCCCCHHHHHHcCCccEeeCch
Confidence            11111  233345556667889999999999999998764

>PRK08139 enoyl-CoA hydratase; Validated

Probab=98.19  E-value=2.6e-05  Score=64.50  Aligned_cols=98  Identities=11%  Similarity=0.133  Sum_probs=69.2

Q ss_pred             HHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHH
Q 031001           37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELL  116 (167)
Q Consensus        37 aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~  116 (167)
                      .++..|..++.||.+.+.|.|.+.|.-++++|  +-|++.++++|.+-...++..    ......  .|           
T Consensus        95 ~~~~~l~~~~kPvIAav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~Gl~----p~~~~~--~l-----------  155 (266)
T PRK08139         95 RVMQAIVALPQPVIARVHGIATAAGCQLVASC--DLAVAADTARFAVPGVNIGLF----CSTPMV--AL-----------  155 (266)
T ss_pred             HHHHHHHhCCCCEEEEECceeeHHHHHHHHhC--CEEEEeCCCEEeCcccCcCCC----CCccHH--HH-----------
Confidence            35667889999999999999999999999999  579999999876633332221    111000  01           


Q ss_pred             HHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001          117 AKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ  155 (167)
Q Consensus       117 a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~  155 (167)
                      .+..|  .....+++-....++|+||+++||||+|.++.
T Consensus       156 ~r~vG--~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~  192 (266)
T PRK08139        156 SRNVP--RKQAMEMLLTGEFIDAATAREWGLVNRVVPAD  192 (266)
T ss_pred             HHHhC--HHHHHHHHHcCCccCHHHHHHcCCccEeeChh
Confidence            11122  33345556667788999999999999999753

>PRK06127 enoyl-CoA hydratase; Provisional

Probab=98.19  E-value=1.7e-05  Score=65.63  Aligned_cols=102  Identities=17%  Similarity=0.112  Sum_probs=70.5

Q ss_pred             HHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHH
Q 031001           37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELL  116 (167)
Q Consensus        37 aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~  116 (167)
                      .++..|..++.||.+.+.|.|.+.|.-++++|  +-|++.++++|.+....++...+-.. .    ..|           
T Consensus        97 ~~~~~i~~~~kPvIaav~G~a~GgG~~Lalac--D~~ia~~~a~f~~pe~~~Gl~p~~g~-~----~~l-----------  158 (269)
T PRK06127         97 AAQAALADYAKPTIACIRGYCIGGGMGIALAC--DIRIAAEDSRFGIPAARLGLGYGYDG-V----KNL-----------  158 (269)
T ss_pred             HHHHHHHhCCCCEEEEECCEEecHHHHHHHhC--CEEEeeCCCEeeCchhhhCCCCCccH-H----HHH-----------
Confidence            35677889999999999999999999999999  57999999988875444322211110 0    001           


Q ss_pred             HHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCchHHH
Q 031001          117 AKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDAAY  159 (167)
Q Consensus       117 a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~~~~~  159 (167)
                      .+..  ......+++-....++++||+++||||+|++. +++.
T Consensus       159 ~~~v--G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~l~  198 (269)
T PRK06127        159 VDLV--GPSAAKDLFYTARRFDAAEALRIGLVHRVTAA-DDLE  198 (269)
T ss_pred             HHHh--CHHHHHHHHHcCCCCCHHHHHHcCCCCEeeCH-HHHH
Confidence            1111  22334455556778999999999999999974 3443

>PRK11423 methylmalonyl-CoA decarboxylase; Provisional

Probab=98.18  E-value=2e-05  Score=64.93  Aligned_cols=98  Identities=12%  Similarity=0.131  Sum_probs=67.8

Q ss_pred             HHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHH
Q 031001           37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELL  116 (167)
Q Consensus        37 aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~  116 (167)
                      .++..|..++.||.+.+.|.|.+.|.-++++|  +-|++.++++|.+-...++...+-. -..               .+
T Consensus        87 ~l~~~i~~~~kPvIaav~G~a~GgG~~lalac--D~~ia~~~a~f~~pe~~~Gl~~~~g-~~~---------------~l  148 (261)
T PRK11423         87 QILRMIQKFPKPVIAMVEGSVWGGAFELIMSC--DLIIAASTSTFAMTPANLGVPYNLS-GIL---------------NF  148 (261)
T ss_pred             HHHHHHHhCCCCEEEEEecEEechHHHHHHhC--CEEEecCCCEecCchhhcCCCCCcc-HHH---------------HH
Confidence            46777889999999999999999999999999  5799999998766333222111100 010               11


Q ss_pred             HHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCC
Q 031001          117 AKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDS  154 (167)
Q Consensus       117 a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~  154 (167)
                      .+..|  .....+++-....++++||+++||||+|.++
T Consensus       149 ~~~vg--~~~a~~l~l~g~~~~a~eA~~~GLv~~vv~~  184 (261)
T PRK11423        149 TNDAG--FHIVKEMFFTASPITAQRALAVGILNHVVEV  184 (261)
T ss_pred             HHHhH--HHHHHHHHHcCCCcCHHHHHHcCCcCcccCH
Confidence            11111  2333444556778999999999999999874

>PRK05980 enoyl-CoA hydratase; Provisional

Probab=98.18  E-value=1.8e-05  Score=65.06  Aligned_cols=99  Identities=13%  Similarity=0.168  Sum_probs=68.0

Q ss_pred             HHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHH
Q 031001           37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELL  116 (167)
Q Consensus        37 aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~  116 (167)
                      .++..|..++.||.+.+.|.|.+.|.-++++|  +-|++.++++|.+  |..  ..|-..+....            ..+
T Consensus        91 ~~~~~l~~~~kPvIaav~G~a~GgG~~lal~c--D~ria~~~a~f~~--pe~--~~Gl~p~~g~~------------~~l  152 (260)
T PRK05980         91 AMTARLEAFPKPVIAAVNGLAFGGGCEITEAV--HLAIASERALFAK--PEI--RLGMPPTFGGT------------QRL  152 (260)
T ss_pred             HHHHHHHhCCCCEEEEEcCEEEhhhhHHhHhC--CEEEecCCCEecC--ccc--ccCCCCCchHh------------hHH
Confidence            36667888999999999999999999999999  5799999998766  432  11221111000            001


Q ss_pred             HHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001          117 AKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ  155 (167)
Q Consensus       117 a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~  155 (167)
                      .+..|  .....+++-....++++||+++||||+|.++.
T Consensus       153 ~~~vG--~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~  189 (260)
T PRK05980        153 PRLAG--RKRALELLLTGDAFSAERALEIGLVNAVVPHE  189 (260)
T ss_pred             HhhcC--HHHHHHHHHcCCccCHHHHHHcCCCCcccCHH
Confidence            11112  22334555566789999999999999998753

>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB

Probab=98.18  E-value=1.2e-05  Score=65.87  Aligned_cols=98  Identities=15%  Similarity=0.107  Sum_probs=66.7

Q ss_pred             HHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHHH
Q 031001           38 IADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLA  117 (167)
Q Consensus        38 I~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a  117 (167)
                      ++..|..++.||.+.+.|.|.+.|.-+++++  +-|++.+++.|.+-...+    |-..+..-. ..|           .
T Consensus        85 ~~~~l~~~~kPvIaav~G~a~GgG~~lala~--D~ria~~~a~f~~pe~~l----G~~p~~g~~-~~l-----------~  146 (256)
T TIGR02280        85 LVRRLRALPLPVVCAVNGVAAGAGANLALAC--DIVLAAESARFIQAFAKI----GLIPDSGGT-WSL-----------P  146 (256)
T ss_pred             HHHHHHhCCCCEEEEECCeeehHHHHHHHhC--CEEEecCCCEEeChhhhc----CCCCCccHH-HHH-----------H
Confidence            4567888999999999999999999999999  579999999886633322    211111000 001           1


Q ss_pred             HHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001          118 KGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ  155 (167)
Q Consensus       118 ~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~  155 (167)
                      +..|  ...-.+++-....++++||+++||||+|.++.
T Consensus       147 ~~vG--~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~  182 (256)
T TIGR02280       147 RLVG--RARAMGLAMLGEKLDARTAASWGLIWQVVDDA  182 (256)
T ss_pred             HHhC--HHHHHHHHHcCCCCCHHHHHHcCCcceeeChH
Confidence            1111  12223445556789999999999999998754

This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).

>PRK06494 enoyl-CoA hydratase; Provisional

Probab=98.18  E-value=2.7e-05  Score=64.01  Aligned_cols=93  Identities=16%  Similarity=0.125  Sum_probs=64.9

Q ss_pred             HhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHHHHHhC
Q 031001           42 MAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTG  121 (167)
Q Consensus        42 i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a~~tg  121 (167)
                      +..++.||.+.+.|.|.+.|.-+.++|  +.|++.++++|.+-...++    -..+....    .        .+.+..|
T Consensus        90 ~~~~~kPvIaav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~G----l~p~~g~~----~--------~l~~~vg  151 (259)
T PRK06494         90 RFDLDKPIIAAVNGVAMGGGFELALAC--DLIVAAENATFALPEPRVG----LAALAGGL----H--------RLPRQIG  151 (259)
T ss_pred             HhcCCCCEEEEECCEEecHHHHHHHhC--CEEEEeCCCEEeCcccccC----CCCCchHH----H--------HHHHHcC
Confidence            446789999999999999999999999  5799999998877443322    21111100    0        1112222


Q ss_pred             CCHHHHHhhhCCCccccHHHHHHcCcceEEeCC
Q 031001          122 KPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDS  154 (167)
Q Consensus       122 ~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~  154 (167)
                        ...-.+++-....++++||+++||||+|+++
T Consensus       152 --~~~a~~lll~g~~~~a~eA~~~GLv~~vv~~  182 (259)
T PRK06494        152 --LKRAMGMILTGRRVTAREGLELGFVNEVVPA  182 (259)
T ss_pred             --HHHHHHHHHcCCcCCHHHHHHcCCCcEecCH
Confidence              3333455666778999999999999999875

>PRK06023 enoyl-CoA hydratase; Provisional

Probab=98.16  E-value=1.5e-05  Score=65.32  Aligned_cols=99  Identities=16%  Similarity=0.044  Sum_probs=68.6

Q ss_pred             HHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHH
Q 031001           36 YAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIEL  115 (167)
Q Consensus        36 ~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~  115 (167)
                      ..++..|..++.||.+.+.|.|.+.|.-+.++|  +.|++.++++|.+-...++.    ..+....  .          .
T Consensus        87 ~~~~~~l~~~~kPvIAav~G~a~GgG~~la~ac--D~ria~~~a~f~~pe~~~Gl----~p~~g~~--~----------~  148 (251)
T PRK06023         87 LDFLIALAEAEKPIVSGVDGLAIGIGTTIHLHC--DLTFASPRSLFRTPFVDLAL----VPEAGSS--L----------L  148 (251)
T ss_pred             HHHHHHHHhCCCCEEEEeCCceecHHHHHHHhC--CEEEEeCCCEecCcccccCC----CCCchHH--H----------H
Confidence            356778889999999999999999999999999  57999999998874433222    1111000  0          0


Q ss_pred             HHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCC
Q 031001          116 LAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDS  154 (167)
Q Consensus       116 ~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~  154 (167)
                      +.+..  ......+++-....++++||+++||||+|.+.
T Consensus       149 l~~~~--g~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~  185 (251)
T PRK06023        149 APRLM--GHQRAFALLALGEGFSAEAAQEAGLIWKIVDE  185 (251)
T ss_pred             HHHHH--hHHHHHHHHHhCCCCCHHHHHHcCCcceeeCH
Confidence            01111  12223344445677999999999999999864

>PRK05862 enoyl-CoA hydratase; Provisional

Probab=98.16  E-value=2.3e-05  Score=64.36  Aligned_cols=98  Identities=17%  Similarity=0.135  Sum_probs=67.7

Q ss_pred             HHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHH
Q 031001           37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELL  116 (167)
Q Consensus        37 aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~  116 (167)
                      .++..|..++.||.+.+.|.|.+.|.-+.++|  +.|++.++++|.+=...+    |-..+..-.    .        .+
T Consensus        85 ~~~~~l~~~~kpvIaav~G~a~GgG~~lalac--D~~ia~~~a~f~~pe~~~----Gl~p~~g~~----~--------~l  146 (257)
T PRK05862         85 TNWEKVARIRKPVIAAVAGYALGGGCELAMMC--DIIIAADTAKFGQPEIKL----GVLPGMGGS----Q--------RL  146 (257)
T ss_pred             HHHHHHHhCCCCEEEEEccEEeHHHHHHHHHC--CEEEEeCCCEEeCchhcc----CcCCCccHH----H--------HH
Confidence            45677888999999999999999999999999  579999999876632222    221111100    0        11


Q ss_pred             HHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCC
Q 031001          117 AKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDS  154 (167)
Q Consensus       117 a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~  154 (167)
                      .+..|  ...-.+++-....++++||+++||||+|++.
T Consensus       147 ~~~vG--~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~  182 (257)
T PRK05862        147 TRAVG--KAKAMDLCLTGRMMDAAEAERAGLVSRVVPA  182 (257)
T ss_pred             HHHhC--HHHHHHHHHhCCccCHHHHHHcCCCCEeeCH
Confidence            11222  2223444556678999999999999999875

>PRK09076 enoyl-CoA hydratase; Provisional

Probab=98.16  E-value=3e-05  Score=63.73  Aligned_cols=99  Identities=15%  Similarity=0.090  Sum_probs=67.5

Q ss_pred             HHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHH
Q 031001           37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELL  116 (167)
Q Consensus        37 aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~  116 (167)
                      .++..|..++.||.+.+.|.|.+.|.-++++|  +-|++.++++|.+-...++    -..+....            ..+
T Consensus        86 ~~~~~l~~~~kPvIAav~G~a~GgG~~lalac--D~~ia~~~a~f~~pe~~~G----l~p~~g~~------------~~l  147 (258)
T PRK09076         86 EAFEALSAFRGVSIAAINGYAMGGGLECALAC--DIRIAEEQAQMALPEASVG----LLPCAGGT------------QNL  147 (258)
T ss_pred             HHHHHHHhCCCCEEEEECCEEecHHHHHHHhC--CEEEecCCCEeeCcccccC----CCCCccHH------------HHH
Confidence            45677888999999999999999999999999  5799999998776332222    11111000            001


Q ss_pred             HHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001          117 AKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ  155 (167)
Q Consensus       117 a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~  155 (167)
                      .+..|  .....+++-....++++||+++||||+|+++.
T Consensus       148 ~~~iG--~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~  184 (258)
T PRK09076        148 PWLVG--EGWAKRMILCGERVDAATALRIGLVEEVVEKG  184 (258)
T ss_pred             HHHhC--HHHHHHHHHcCCcCCHHHHHHCCCCceecCch
Confidence            11112  22223445556778999999999999998754

>PRK07396 dihydroxynaphthoic acid synthetase; Validated

Probab=98.16  E-value=2.3e-05  Score=65.02  Aligned_cols=102  Identities=20%  Similarity=0.180  Sum_probs=69.7

Q ss_pred             HHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHH
Q 031001           37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELL  116 (167)
Q Consensus        37 aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~  116 (167)
                      .++..|..++.||.+.+.|.|.+.|.-++++|  +-|++.++++|.+=.+.++...+-. -.    ..|           
T Consensus        98 ~~~~~l~~~~kPvIAav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~Gl~p~~~-~~----~~l-----------  159 (273)
T PRK07396         98 DLQRLIRTCPKPVIAMVAGYAIGGGHVLHLVC--DLTIAADNAIFGQTGPKVGSFDGGY-GA----SYL-----------  159 (273)
T ss_pred             HHHHHHHhCCCCEEEEECCEEehHHHHHHHhC--CEEEeeCCcEEecccccccccCCch-HH----HHH-----------
Confidence            35667888999999999999999999999999  5799999998877444432211110 00    001           


Q ss_pred             HHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCchHHH
Q 031001          117 AKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDAAY  159 (167)
Q Consensus       117 a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~~~~~  159 (167)
                      .+..|  .....+++-....|+|+||+++||||+|++. +++.
T Consensus       160 ~~~vG--~~~a~~l~ltg~~~~A~eA~~~GLv~~vv~~-~~l~  199 (273)
T PRK07396        160 ARIVG--QKKAREIWFLCRQYDAQEALDMGLVNTVVPL-ADLE  199 (273)
T ss_pred             HHHhh--HHHHHHHHHhCCCcCHHHHHHcCCcCeecCH-HHHH
Confidence            11111  2233444555678999999999999999874 3443

>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated

Probab=98.14  E-value=1.8e-05  Score=64.94  Aligned_cols=100  Identities=11%  Similarity=0.022  Sum_probs=69.7

Q ss_pred             HHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHH
Q 031001           37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELL  116 (167)
Q Consensus        37 aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~  116 (167)
                      .++..|..++.||.+.+.|.|.+.|..++++|  +-|++.++++|.+....++    -.....  ...           +
T Consensus        87 ~~~~~l~~~~kPvIaav~G~a~GgG~~lala~--D~~ia~~~a~f~~pe~~~G----l~p~~~--~~~-----------l  147 (255)
T PRK07112         87 DLWHRLATGPYVTIAHVRGKVNAGGIGFVAAS--DIVIADETAPFSLSELLFG----LIPACV--LPF-----------L  147 (255)
T ss_pred             HHHHHHHcCCCCEEEEEecEEEcchhHHHHcC--CEEEEcCCCEEeCchhhhc----cCcchh--hHH-----------H
Confidence            45667788899999999999999999999999  5799999998877444322    211110  001           1


Q ss_pred             HHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCchH
Q 031001          117 AKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDA  157 (167)
Q Consensus       117 a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~~~  157 (167)
                      .++.  ......+++-...-++++||+++||||+|.++.+.
T Consensus       148 ~~~v--g~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~  186 (255)
T PRK07112        148 IRRI--GTQKAHYMTLMTQPVTAQQAFSWGLVDAYGANSDT  186 (255)
T ss_pred             HHHh--CHHHHHHHHHhCCcccHHHHHHcCCCceecCcHHH
Confidence            1111  22333445555677999999999999999876543

>PRK07938 enoyl-CoA hydratase; Provisional

Probab=98.14  E-value=2e-05  Score=64.58  Aligned_cols=95  Identities=17%  Similarity=0.157  Sum_probs=68.3

Q ss_pred             HHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHH
Q 031001           37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELL  116 (167)
Q Consensus        37 aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~  116 (167)
                      .++..|..++.||.+.+.|.|.+.|.-++++|  +-|++.++++|.+=...++ ..|...                  .+
T Consensus        85 ~~~~~i~~~~kPvIAav~G~a~GgG~~Lal~c--D~ria~~~a~f~~pe~~~G-~~g~~~------------------~l  143 (249)
T PRK07938         85 AAFRAVYECAVPVIAAVHGFCLGGGIGLVGNA--DVIVASDDATFGLPEVDRG-ALGAAT------------------HL  143 (249)
T ss_pred             HHHHHHHhCCCCEEEEEcCEEeehHHHHHHhC--CEEEEeCCCEeeCccceec-CchhHH------------------HH
Confidence            35667888999999999999999999999999  5799999998766322222 111110                  01


Q ss_pred             HHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCC
Q 031001          117 AKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDS  154 (167)
Q Consensus       117 a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~  154 (167)
                      .+..  ....-.+++-....++++||+++||||+|.++
T Consensus       144 ~~~v--g~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~  179 (249)
T PRK07938        144 QRLV--PQHLMRALFFTAATITAAELHHFGSVEEVVPR  179 (249)
T ss_pred             HHhc--CHHHHHHHHHhCCcCCHHHHHHCCCccEEeCH
Confidence            1112  23344556667789999999999999999874

>PRK08138 enoyl-CoA hydratase; Provisional

Probab=98.14  E-value=3.2e-05  Score=63.68  Aligned_cols=99  Identities=19%  Similarity=0.171  Sum_probs=68.2

Q ss_pred             HHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHH
Q 031001           37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELL  116 (167)
Q Consensus        37 aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~  116 (167)
                      .++..|..++.||.+.+.|.|.+.|.-++++|  +.|++.++++|.+=...+    |-..+..-.            ..+
T Consensus        89 ~~~~~l~~~~kPvIaav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~----Gl~p~~g~~------------~~l  150 (261)
T PRK08138         89 RYWEAIAQCPKPVIAAVNGYALGGGCELAMHA--DIIVAGESASFGQPEIKV----GLMPGAGGT------------QRL  150 (261)
T ss_pred             HHHHHHHhCCCCEEEEEccEEEcHHHHHHHhC--CEEEecCCCEeeCccccc----ccCCCCcHH------------HHH
Confidence            46777888999999999999999999999999  579999999876633222    211111000            001


Q ss_pred             HHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001          117 AKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ  155 (167)
Q Consensus       117 a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~  155 (167)
                      .+..|  .....+++-....|+++||+++||||+|.++.
T Consensus       151 ~~~vG--~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~  187 (261)
T PRK08138        151 VRAVG--KFKAMRMALTGCMVPAPEALAIGLVSEVVEDE  187 (261)
T ss_pred             HHHhC--HHHHHHHHHcCCCCCHHHHHHCCCCcEecCch
Confidence            11222  22334455566789999999999999998754

>PRK08260 enoyl-CoA hydratase; Provisional

Probab=98.13  E-value=2.4e-05  Score=65.65  Aligned_cols=98  Identities=13%  Similarity=0.015  Sum_probs=68.9

Q ss_pred             HHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHH
Q 031001           37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELL  116 (167)
Q Consensus        37 aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~  116 (167)
                      .++..|..++.||.+.+.|.|.+.|.-|+++|  +-|++.++++|.+-...++..    .+.... -.|           
T Consensus       104 ~~~~~l~~~pkPvIAav~G~a~GgG~~Lalac--D~ria~~~a~f~~pe~~~Gl~----p~~g~~-~~l-----------  165 (296)
T PRK08260        104 RVTLRIFDSLKPVIAAVNGPAVGVGATMTLAM--DIRLASTAARFGFVFGRRGIV----PEAASS-WFL-----------  165 (296)
T ss_pred             HHHHHHHhCCCCEEEEECCeeehHhHHHHHhC--CEEEeeCCCEEecchhhcCcC----CCcchh-hhH-----------
Confidence            46777889999999999999999999999999  579999999887754433221    111000 001           


Q ss_pred             HHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCC
Q 031001          117 AKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDS  154 (167)
Q Consensus       117 a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~  154 (167)
                      .+..  ......+++-....++++||+++||||+|.+.
T Consensus       166 ~r~v--G~~~A~~llltg~~~~a~eA~~~GLv~~vv~~  201 (296)
T PRK08260        166 PRLV--GLQTALEWVYSGRVFDAQEALDGGLVRSVHPP  201 (296)
T ss_pred             HHhh--CHHHHHHHHHcCCccCHHHHHHCCCceeecCH
Confidence            1111  12333455656677999999999999999865

>PLN02921 naphthoate synthase

Probab=98.13  E-value=3.1e-05  Score=66.18  Aligned_cols=97  Identities=16%  Similarity=0.138  Sum_probs=69.5

Q ss_pred             HHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHHH
Q 031001           38 IADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLA  117 (167)
Q Consensus        38 I~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a  117 (167)
                      ++..|+.++.||.+.+.|.|.+.|..|+++|  +-|++.+++.|.+..+.++.+-+-..-     ..|           .
T Consensus       153 l~~~l~~~~kPvIAaVnG~a~GGG~~Lalac--D~riA~~~A~f~~pe~~~Gl~p~~gg~-----~~L-----------~  214 (327)
T PLN02921        153 LQIQIRRLPKPVIAMVAGYAVGGGHILHMVC--DLTIAADNAVFGQTGPKVGSFDAGYGS-----SIM-----------A  214 (327)
T ss_pred             HHHHHHhCCCCEEEEECCEEecHHHHHHHhC--CEEEEeCCCEEeCcccccCCCCCccHH-----HHH-----------H
Confidence            5667888999999999999999999999999  579999999888765654322111000     001           1


Q ss_pred             HHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCC
Q 031001          118 KGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDS  154 (167)
Q Consensus       118 ~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~  154 (167)
                      +..  ......+++-....|+|+||+++||||+|.+.
T Consensus       215 rli--G~~~A~ellltG~~~~A~eA~~~GLV~~vv~~  249 (327)
T PLN02921        215 RLV--GQKKAREMWFLARFYTASEALKMGLVNTVVPL  249 (327)
T ss_pred             HHh--CHHHHHHHHHcCCcCCHHHHHHCCCceEEeCH
Confidence            111  22333455666778999999999999999875

>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated

Probab=98.12  E-value=3e-05  Score=64.49  Aligned_cols=98  Identities=11%  Similarity=0.089  Sum_probs=68.0

Q ss_pred             HHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHH
Q 031001           37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELL  116 (167)
Q Consensus        37 aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~  116 (167)
                      .++..|..++.||.+.+.|.|.+.|.-++++|  +-|++.++++|.+  |..  ..|-..+....            ..+
T Consensus        95 ~~~~~l~~~~kPvIAav~G~a~GgG~~lal~c--D~~ia~~~a~f~~--pe~--~~Gl~p~~g~~------------~~l  156 (275)
T PRK09120         95 GWWRRLRWYQKPTIAMVNGWCFGGGFSPLVAC--DLAIAADEAQFGL--SEI--NWGIPPGGGVS------------KAM  156 (275)
T ss_pred             HHHHHHHhCCCCEEEEEcCEEechhHHHHHhC--CEEEEeCCcEecC--Ccc--ccCCCCCcchH------------HHH
Confidence            45677888999999999999999999999999  5799999998876  442  11222111000            011


Q ss_pred             HHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCC
Q 031001          117 AKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDS  154 (167)
Q Consensus       117 a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~  154 (167)
                      .+..|  ...-.+++-....|+++||+++||||+|++.
T Consensus       157 ~~~iG--~~~a~~llltg~~~~A~eA~~~Glv~~vv~~  192 (275)
T PRK09120        157 ADTVG--HRDALYYIMTGETFTGRKAAEMGLVNESVPL  192 (275)
T ss_pred             HHHcC--HHHHHHHHhcCCccCHHHHHHcCCcceecCH
Confidence            11122  2333445556678999999999999999874

>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional

Probab=98.12  E-value=2.2e-05  Score=65.39  Aligned_cols=101  Identities=14%  Similarity=0.171  Sum_probs=71.0

Q ss_pred             HHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCC-hhHHHHHHHHHHHHHHHHHHHH
Q 031001           38 IADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGP-VTDMWRKAKDLEANAESYIELL  116 (167)
Q Consensus        38 I~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~-~~dl~~~~~~l~~~~~~~~~~~  116 (167)
                      ++..|..++.||.+.+.|.|.+.|.-++++|  +.|++.++++|.+-...+    |- ..+...            ...+
T Consensus        99 ~~~~l~~~~kPvIAaV~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~l----Gl~~p~~~~------------~~~l  160 (278)
T PLN03214         99 FLVRLLRSRLATVCAIRGACPAGGCAVSLCC--DYRLQTTEGTMGLNEVAL----GIPVPKFWA------------RLFM  160 (278)
T ss_pred             HHHHHHcCCCCEEEEEcCcccchHHHHHHhC--CEEEecCCCEecCcHHHh----CCCCCChhH------------HHHH
Confidence            5567888899999999999999999999999  579999999877633322    22 122110            0112


Q ss_pred             HHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCchHHH
Q 031001          117 AKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDAAY  159 (167)
Q Consensus       117 a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~~~~~  159 (167)
                      .+..|  .....+++-...-|+++||+++||||+|++. +++.
T Consensus       161 ~~~~G--~~~a~~llltg~~~~a~eA~~~Glv~~vv~~-~~l~  200 (278)
T PLN03214        161 GRVID--RKVAESLLLRGRLVRPAEAKQLGLIDEVVPA-AALM  200 (278)
T ss_pred             HHhcC--HHHHHHHHHcCCccCHHHHHHcCCCcEecCh-HHHH
Confidence            22232  3444556667778999999999999999875 3443

>PRK06563 enoyl-CoA hydratase; Provisional

Probab=98.12  E-value=2.5e-05  Score=64.01  Aligned_cols=95  Identities=11%  Similarity=0.040  Sum_probs=65.4

Q ss_pred             HHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHHHHHh
Q 031001           41 AMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGT  120 (167)
Q Consensus        41 ~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a~~t  120 (167)
                      .++.++.||.+.+.|.|.+.|..++++|  +.|++.+++.|.+....++..-+-..-.     .           +.+..
T Consensus        87 ~l~~~~kPvIAav~G~a~GgG~~lal~c--D~ria~~~a~f~~pe~~~Gl~p~~g~~~-----~-----------l~~~v  148 (255)
T PRK06563         87 VGRRLSKPLVVAVQGYCLTLGIELMLAA--DIVVAADNTRFAQLEVQRGILPFGGATL-----R-----------FPQAA  148 (255)
T ss_pred             HHhcCCCCEEEEEcCeeecHHHHHHHhC--CEEEecCCCEEeChhhhcCCCCCccHHH-----H-----------HHHHh
Confidence            4777899999999999999999999999  5799999998877444333211111000     0           11111


Q ss_pred             CCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001          121 GKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ  155 (167)
Q Consensus       121 g~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~  155 (167)
                      |  .....+++-....|+++||+++||||+|.+..
T Consensus       149 G--~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~  181 (255)
T PRK06563        149 G--WGNAMRYLLTGDEFDAQEALRLGLVQEVVPPG  181 (255)
T ss_pred             h--HHHHHHHHHcCCCcCHHHHHHcCCCcEeeCHH
Confidence            1  12233455566789999999999999998763

>PRK05995 enoyl-CoA hydratase; Provisional

Probab=98.12  E-value=2.7e-05  Score=64.03  Aligned_cols=97  Identities=14%  Similarity=0.157  Sum_probs=68.1

Q ss_pred             HHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHH
Q 031001           37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELL  116 (167)
Q Consensus        37 aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~  116 (167)
                      .++..|..++.||.+.+.|.|.+.|+-++++|  +-|++.++++|.+-...+    |-..+..  ...           +
T Consensus        90 ~~~~~l~~~~kPvIaav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~----Gl~p~~g--~~~-----------l  150 (262)
T PRK05995         90 DMLRAIYRCPKPVIARVHGDAYAGGMGLVAAC--DIAVAADHAVFCLSEVRL----GLIPATI--SPY-----------V  150 (262)
T ss_pred             HHHHHHHcCCCCEEEEECCEEEhhHHHHHHhC--CEEEeeCCCEEeCccccc----ccCccch--HHH-----------H
Confidence            45677888999999999999999999999999  579999999886633322    2222211  000           1


Q ss_pred             HHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCC
Q 031001          117 AKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDS  154 (167)
Q Consensus       117 a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~  154 (167)
                      .+..  ......+++-....++++||+++||||+|.+.
T Consensus       151 ~~~v--g~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~  186 (262)
T PRK05995        151 IRAM--GERAARRYFLTAERFDAAEALRLGLVHEVVPA  186 (262)
T ss_pred             HHHh--CHHHHHHHHHcCCccCHHHHHHcCCCCeecCH
Confidence            1112  23333455556677999999999999999864

>PRK07657 enoyl-CoA hydratase; Provisional

Probab=98.12  E-value=2.9e-05  Score=63.81  Aligned_cols=100  Identities=16%  Similarity=0.114  Sum_probs=67.9

Q ss_pred             HHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHH
Q 031001           36 YAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIEL  115 (167)
Q Consensus        36 ~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~  115 (167)
                      ..++..|..++.||.+.+.|.|.+.|+-+.++|  +-|++.++++|.+-...++..    .+..- ...|.+        
T Consensus        87 ~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~c--D~~ia~~~a~f~~pe~~~G~~----p~~g~-~~~l~~--------  151 (260)
T PRK07657         87 RTTMEMVEQLPQPVIAAINGIALGGGLELALAC--DFRIAAESASLGLTETTLAII----PGAGG-TQRLPR--------  151 (260)
T ss_pred             HHHHHHHHhCCCCEEEEEcCEeechHHHHHHhC--CEEEeeCCCEEcCchhccCcC----CCccH-HHHHHH--------
Confidence            346778888999999999999999999999999  579999999877643332221    11100 000111        


Q ss_pred             HHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001          116 LAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ  155 (167)
Q Consensus       116 ~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~  155 (167)
                         ..|  .....+++-....++++||+++||||+|.++.
T Consensus       152 ---~vG--~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~  186 (260)
T PRK07657        152 ---LIG--VGRAKELIYTGRRISAQEAKEIGLVEFVVPAH  186 (260)
T ss_pred             ---HhC--HHHHHHHHHhCCCCCHHHHHHcCCCCeecCHH
Confidence               111  12233444456679999999999999998753

>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated

Probab=98.11  E-value=2.5e-05  Score=64.18  Aligned_cols=99  Identities=17%  Similarity=0.148  Sum_probs=68.6

Q ss_pred             HHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHH
Q 031001           36 YAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIEL  115 (167)
Q Consensus        36 ~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~  115 (167)
                      ..++..|..++.||.+.+.|.|.+.|.-++++|  +.|++.++++|.+-...+    |-..+....    .        .
T Consensus        87 ~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~c--D~~va~~~a~f~~pe~~~----Gl~p~~g~~----~--------~  148 (260)
T PRK05809         87 NKVFRKLENLDKPVIAAINGFALGGGCELSMAC--DIRIASEKAKFGQPEVGL----GITPGFGGT----Q--------R  148 (260)
T ss_pred             HHHHHHHHcCCCCEEEEEcCeeecHHHHHHHhC--CEEEeeCCCEEeCccccc----CCCCCccHH----H--------H
Confidence            346778889999999999999999999999999  579999999887643332    222221100    0        0


Q ss_pred             HHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCC
Q 031001          116 LAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDS  154 (167)
Q Consensus       116 ~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~  154 (167)
                      +.+..|  .....+++-....++++||+++||||+|.++
T Consensus       149 l~~~vG--~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~  185 (260)
T PRK05809        149 LARIVG--PGKAKELIYTGDMINAEEALRIGLVNKVVEP  185 (260)
T ss_pred             HHHHhC--HHHHHHHHHhCCCCCHHHHHHcCCCCcccCh
Confidence            111111  1233444555667999999999999999874

>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase)

Probab=98.10  E-value=2.7e-05  Score=64.08  Aligned_cols=98  Identities=18%  Similarity=0.176  Sum_probs=67.9

Q ss_pred             HHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHH
Q 031001           37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELL  116 (167)
Q Consensus        37 aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~  116 (167)
                      .++..|..++.||.+.+.|.|.+.|.-+.++|  +-|++.++++|.+-...++..-+-.. .    ..|-+         
T Consensus        88 ~~~~~l~~~~kPvIAav~G~a~GgG~~lalac--D~~ia~~~a~f~~pe~~~G~~p~~~~-~----~~l~~---------  151 (259)
T TIGR01929        88 DVQRQIRTCPKPVIAMVNGYAIGGGHVLHVVC--DLTIAAENARFGQTGPKVGSFDGGYG-S----SYLAR---------  151 (259)
T ss_pred             HHHHHHHhCCCCEEEEEcCEEehHHHHHHHhC--CEEEecCCCEecCcccccccCCCccH-H----HHHHH---------
Confidence            46677889999999999999999999999999  57999999988875544332211100 0    00111         


Q ss_pred             HHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCC
Q 031001          117 AKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDS  154 (167)
Q Consensus       117 a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~  154 (167)
                        ..|  .....+++-....++++||+++||||+|+++
T Consensus       152 --~vG--~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~  185 (259)
T TIGR01929       152 --IVG--QKKAREIWFLCRQYDAEQALDMGLVNTVVPL  185 (259)
T ss_pred             --HhH--HHHHHHHHHhCCccCHHHHHHcCCcccccCH
Confidence              111  1122334445667999999999999999875

This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.

>PLN02267 enoyl-CoA hydratase/isomerase family protein

Probab=98.09  E-value=4.3e-05  Score=62.36  Aligned_cols=103  Identities=18%  Similarity=0.225  Sum_probs=69.4

Q ss_pred             HHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeec-CCceeeecccccCCcCCh-hHHHHHHHHHHHHHHHHHH
Q 031001           37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQP-NSSTKLYLPVVGRSSGPV-TDMWRKAKDLEANAESYIE  114 (167)
Q Consensus        37 aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p-~s~~miH~p~~~~~~G~~-~dl~~~~~~l~~~~~~~~~  114 (167)
                      .++..|..++.||.+.+.|.|.+.|..+++++  +.|++.+ .++|.+-...+    |-. .+..             ..
T Consensus        85 ~~~~~l~~~~kPvIAaV~G~a~GgG~~lalac--D~ria~~~~a~f~~pe~~~----Gl~~p~~~-------------~~  145 (239)
T PLN02267         85 PLVADLISLPMPTIAAVTGHASAAGFILALSH--DYVLMRKDRGVLYMSEVDI----GLPLPDYF-------------MA  145 (239)
T ss_pred             HHHHHHhcCCCCEEEEECCcchHHHHHHHHHC--CEEEecCCCCeEecccccc----CCCCChHH-------------HH
Confidence            35667888999999999999999999999999  5799985 45665532221    221 2210             01


Q ss_pred             HHHHHhCCCHHHH-HhhhCCCccccHHHHHHcCcceEEeCCchHHHh
Q 031001          115 LLAKGTGKPKEEI-AKDIQRPKYMQAKEAIVYGLADKIIDSQDAAYE  160 (167)
Q Consensus       115 ~~a~~tg~~~~~i-~~~~~~~~~lsa~EA~e~GliD~I~~~~~~~~~  160 (167)
                      .+.++.|.+  .. .+++-....|+++||+++||||+|.++.+++.+
T Consensus       146 ~l~~~vG~~--~a~~~llltG~~~~a~eA~~~Glv~~vv~~~~~l~~  190 (239)
T PLN02267        146 LLRAKIGSP--AARRDVLLRAAKLTAEEAVEMGIVDSAHDSAEETVE  190 (239)
T ss_pred             HHHHHcChH--HHHHHHHHcCCcCCHHHHHHCCCcceecCCHHHHHH
Confidence            122223321  22 355666788999999999999999976555544

>PRK07509 enoyl-CoA hydratase; Provisional

Probab=98.09  E-value=1.9e-05  Score=64.90  Aligned_cols=97  Identities=18%  Similarity=0.154  Sum_probs=67.5

Q ss_pred             HHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHHH
Q 031001           38 IADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLA  117 (167)
Q Consensus        38 I~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a  117 (167)
                      ++..|+.++.||.+.+.|.|.+.|.-+.++|  +-|++.+++.|.+....++.    ..+..-.    .        .+.
T Consensus        94 ~~~~~~~~~kpvIaav~G~a~GgG~~lalac--D~~ia~~~a~f~~pe~~~Gl----~p~~g~~----~--------~l~  155 (262)
T PRK07509         94 VSLGWRRLPVPVIAALEGVCFGGGLQIALGA--DIRIAAPDTKLSIMEAKWGL----VPDMAGT----V--------SLR  155 (262)
T ss_pred             HHHHHHhCCCCEEEEECCeeecchHHHHHhC--CEEEecCCCEeecchhccCC----CCCchHH----H--------HHH
Confidence            3455678999999999999999999999999  57999999988775443222    1111100    0        011


Q ss_pred             HHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCC
Q 031001          118 KGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDS  154 (167)
Q Consensus       118 ~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~  154 (167)
                      +..  ......+++-....++++||+++||||+|.+.
T Consensus       156 ~~~--g~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~  190 (262)
T PRK07509        156 GLV--RKDVARELTYTARVFSAEEALELGLVTHVSDD  190 (262)
T ss_pred             HHh--CHHHHHHHHHcCCCcCHHHHHHcCChhhhhch
Confidence            111  22334555566778999999999999999854

>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional

Probab=98.09  E-value=2.1e-05  Score=65.12  Aligned_cols=117  Identities=22%  Similarity=0.276  Sum_probs=74.7

Q ss_pred             CCCeEEEEcCCCCCCC-CCCCCCCHHHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeeccc
Q 031001            9 SKPIYLYINSSGTQNE-KKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPV   87 (167)
Q Consensus         9 ~~~I~l~INS~G~~~~-~~~~~G~v~~g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~   87 (167)
                      .-||.-.+||||.--. ..|.-|...........+-..+.|+.++++|.|.|.|++.+..+  +..++.|++.+.+-.|.
T Consensus        98 ~lPvV~lvDtpGa~~g~~aE~~G~~~~ia~~~~~~s~~~VP~IsVI~G~~~gGgA~a~~~~--D~v~m~~~a~~~v~~pe  175 (256)
T PRK12319         98 GRPVVTFINTAGAYPGVGAEERGQGEAIARNLMEMSDLKVPIIAIIIGEGGSGGALALAVA--DQVWMLENTMYAVLSPE  175 (256)
T ss_pred             CCCEEEEEECCCcCCCHhHHhccHHHHHHHHHHHHhCCCCCEEEEEeCCcCcHHHHHhhcC--CEEEEecCceEEEcCHH
Confidence            4699999999993211 01111222222333344445578999999999999999988777  57899999988886665


Q ss_pred             ccCCcCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001           88 VGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ  155 (167)
Q Consensus        88 ~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~  155 (167)
                       +     +..+  .++.                ....++..+.+    -++|.++.+.|+||+|++..
T Consensus       176 -~-----~a~i--l~~~----------------~~~a~~aa~~~----~~~a~~l~~~g~iD~ii~e~  215 (256)
T PRK12319        176 -G-----FASI--LWKD----------------GSRATEAAELM----KITAGELLEMGVVDKVIPEH  215 (256)
T ss_pred             -H-----HHHH--HhcC----------------cccHHHHHHHc----CCCHHHHHHCCCCcEecCCC
Confidence             2     1111  1110                01222223333    35999999999999999754

>PRK07658 enoyl-CoA hydratase; Provisional

Probab=98.09  E-value=5e-05  Score=62.23  Aligned_cols=99  Identities=15%  Similarity=0.137  Sum_probs=68.3

Q ss_pred             HHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHH
Q 031001           36 YAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIEL  115 (167)
Q Consensus        36 ~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~  115 (167)
                      ..++..|..++.||.+.+.|.|.+.|.-++++|  +-|++.++++|.+-...++    -..+..-. ..|          
T Consensus        84 ~~~~~~l~~~~kpvIAav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~G----l~p~~g~~-~~l----------  146 (257)
T PRK07658         84 QVTFERVEKFSKPVIAAIHGAALGGGLELAMSC--HIRFATESAKLGLPELNLG----LIPGFAGT-QRL----------  146 (257)
T ss_pred             HHHHHHHHhCCCCEEEEEcCeeeeHHHHHHHhC--CEEEecCCCcccCcccccC----CCCCCcHH-HHH----------
Confidence            346778889999999999999999999999999  5799999998766332222    11111100 001          


Q ss_pred             HHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCC
Q 031001          116 LAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDS  154 (167)
Q Consensus       116 ~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~  154 (167)
                       .+..|  ...-.+++-....++++||+++||||+|.++
T Consensus       147 -~~~vG--~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~  182 (257)
T PRK07658        147 -PRYVG--KAKALEMMLTSEPITGAEALKWGLVNGVFPE  182 (257)
T ss_pred             -HHHhC--HHHHHHHHHcCCCcCHHHHHHcCCcCeecCh
Confidence             11112  2233455556778999999999999999864

>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional

Probab=98.08  E-value=1.8e-05  Score=69.46  Aligned_cols=114  Identities=19%  Similarity=0.198  Sum_probs=73.1

Q ss_pred             CCCeEEEEcCCCCCCCC-CCCCCCHHHHHHHHHH---HhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeee
Q 031001            9 SKPIYLYINSSGTQNEK-KESVGAETDAYAIADA---MAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLY   84 (167)
Q Consensus         9 ~~~I~l~INS~G~~~~~-~~~~G~v~~g~aI~~~---i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH   84 (167)
                      .-||.-+|||||.--.. .|-.|.   +.+|...   |-..+.|+.+++.|.+.|.|++.+++|  +..++.|+|.+.+-
T Consensus       221 ~lPIVtLVDTpGA~pG~~AEe~Gq---a~aIAr~l~ams~l~VPiISVViGeGgSGGAlalg~a--D~VlMle~A~ysVi  295 (431)
T PLN03230        221 GFPILTFVDTPGAYAGIKAEELGQ---GEAIAFNLREMFGLRVPIIATVIGEGGSGGALAIGCG--NRMLMMENAVYYVA  295 (431)
T ss_pred             CCCEEEEEeCCCcCCCHHHHHHhH---HHHHHHHHHHHhcCCCCEEEEEeCCCCcHHHHHhhcC--CEEEEecCCEEEec
Confidence            46999999999932111 111122   2344444   456678999999999999999988877  47889999988776


Q ss_pred             cccccCCcCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001           85 LPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ  155 (167)
Q Consensus        85 ~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~  155 (167)
                      .|. +    -+ .  +.++.-.+                .++..+    ..-+||+++++.|+||+|+...
T Consensus       296 sPE-g----aA-s--ILwkd~~~----------------A~eAAe----alkitA~dL~~~GiID~II~Ep  338 (431)
T PLN03230        296 SPE-A----CA-A--ILWKSAAA----------------APKAAE----ALRITAAELVKLGVVDEIVPEP  338 (431)
T ss_pred             CHH-H----HH-H--HHhccccc----------------hHHHHH----HcCCCHHHHHhCCCCeEeccCC
Confidence            664 1    11 1  11110000                011111    2268999999999999999743

>PRK07468 enoyl-CoA hydratase; Provisional

Probab=98.08  E-value=3.4e-05  Score=63.58  Aligned_cols=97  Identities=14%  Similarity=0.162  Sum_probs=69.3

Q ss_pred             HHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHHH
Q 031001           38 IADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLA  117 (167)
Q Consensus        38 I~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a  117 (167)
                      ++..|+.++.||.+.+.|.|.+.|.-++++|  +-|++.++++|.+-...+    |-..+..  ...           +.
T Consensus        92 ~~~~l~~~~kPvIaav~G~a~GgG~~lala~--D~ria~~~a~f~~pe~~~----Gl~p~~g--~~~-----------~~  152 (262)
T PRK07468         92 MLKALNDLPKPLIGRIQGQAFGGGVGLISVC--DVAIAVSGARFGLTETRL----GLIPATI--SPY-----------VV  152 (262)
T ss_pred             HHHHHHcCCCCEEEEECCEEEhHHHHHHHhC--CEEEEeCCCEEeCchhcc----CCCcccc--hhh-----------HH
Confidence            6778899999999999999999999999999  579999999776633222    2221210  000           11


Q ss_pred             HHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001          118 KGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ  155 (167)
Q Consensus       118 ~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~  155 (167)
                      .+  .......+++-...-++++||+++||||+|.+..
T Consensus       153 ~~--vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~  188 (262)
T PRK07468        153 AR--MGEANARRVFMSARLFDAEEAVRLGLLSRVVPAE  188 (262)
T ss_pred             hh--ccHHHHHHHHHhCCccCHHHHHHcCCcceecCHH
Confidence            11  2233445666778899999999999999998753

>PRK08140 enoyl-CoA hydratase; Provisional

Probab=98.07  E-value=2.7e-05  Score=64.04  Aligned_cols=98  Identities=16%  Similarity=0.044  Sum_probs=67.3

Q ss_pred             HHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHHH
Q 031001           38 IADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLA  117 (167)
Q Consensus        38 I~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a  117 (167)
                      ++..|..++.||.+.+.|.|.+.|+-++++|  +-|++.++++|.+-...+    |-..+..-.. .|           .
T Consensus        91 ~~~~l~~~~kPvIaav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~----G~~p~~g~~~-~l-----------~  152 (262)
T PRK08140         91 LVRRLRALPLPVIAAVNGVAAGAGANLALAC--DIVLAARSASFIQAFVKI----GLVPDSGGTW-FL-----------P  152 (262)
T ss_pred             HHHHHHhCCCCEEEEECCeeehhHHHHHHhC--CEEEecCCCEEecccccc----CCCCCccHHH-HH-----------H
Confidence            5667888999999999999999999999999  579999999887533222    2211110000 01           1


Q ss_pred             HHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001          118 KGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ  155 (167)
Q Consensus       118 ~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~  155 (167)
                      +.-  ......+++-...-++++||+++||||+|.+..
T Consensus       153 ~~v--G~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~  188 (262)
T PRK08140        153 RLV--GMARALGLALLGEKLSAEQAEQWGLIWRVVDDA  188 (262)
T ss_pred             HHh--CHHHHHHHHHcCCCcCHHHHHHcCCccEeeChH
Confidence            111  122334455567779999999999999998754

>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit

Probab=98.07  E-value=1.1e-05  Score=68.61  Aligned_cols=117  Identities=22%  Similarity=0.215  Sum_probs=73.8

Q ss_pred             CCCeEEEEcCCCCCCC-CCCCCCCHHHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeeccc
Q 031001            9 SKPIYLYINSSGTQNE-KKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPV   87 (167)
Q Consensus         9 ~~~I~l~INS~G~~~~-~~~~~G~v~~g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~   87 (167)
                      .-||.-++||||.--+ ..|-.|..........++-..+.|+.+++.|.|+|.|++.+..+  +..++.|++.+.+-.|.
T Consensus       151 ~iPvVtlvDTpGa~~g~~aE~~G~~~aia~~l~a~s~~~VP~IsVViGeggsGGAla~~~a--D~v~m~~~a~~sVisPE  228 (316)
T TIGR00513       151 KMPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLGVPVICTVIGEGGSGGALAIGVG--DKVNMLEYSTYSVISPE  228 (316)
T ss_pred             CCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEecccccHHHhhhccC--CEEEEecCceEEecCHH
Confidence            4699999999993211 11112222223333344456679999999999999999877656  57899999998887665


Q ss_pred             ccCCcCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001           88 VGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ  155 (167)
Q Consensus        88 ~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~  155 (167)
                       +    -++=+   ++.-     .           ..++..+.    .-++|+++++.|+||.|++..
T Consensus       229 -g----~a~Il---~kd~-----~-----------~a~~aae~----~~~ta~~l~~~G~iD~II~ep  268 (316)
T TIGR00513       229 -G----CAAIL---WKDA-----S-----------KAPKAAEA----MKITAPDLKELGLIDSIIPEP  268 (316)
T ss_pred             -H----HHHHh---ccch-----h-----------hHHHHHHH----ccCCHHHHHHCCCCeEeccCC
Confidence             2    11111   1110     0           01222222    335799999999999999744

The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.

>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase

Probab=98.06  E-value=5e-05  Score=62.40  Aligned_cols=98  Identities=17%  Similarity=0.172  Sum_probs=66.9

Q ss_pred             HHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHH
Q 031001           37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELL  116 (167)
Q Consensus        37 aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~  116 (167)
                      .++..|..++.||.+.+.|.|.+.|.-++++|  +-|++.++++|.+=.+.++...   .....  ..           +
T Consensus        85 ~~~~~l~~~~kPvIaav~G~a~GgG~~lal~c--D~~ia~~~a~f~~pe~~~G~~~---~~~~~--~~-----------l  146 (256)
T TIGR03210        85 ELHSAIRDVPKPVIARVQGYAIGGGNVLVTIC--DLTIASEKAQFGQVGPKVGSVD---PGYGT--AL-----------L  146 (256)
T ss_pred             HHHHHHHhCCCCEEEEECCEEehhhHHHHHhC--CEEEEeCCCEEecccccccccC---CccHH--HH-----------H
Confidence            46778889999999999999999999999999  5799999998877333322110   11000  00           1


Q ss_pred             HHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCC
Q 031001          117 AKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDS  154 (167)
Q Consensus       117 a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~  154 (167)
                      .+..|  ...-.+++-....|+|+||+++||||+|.+.
T Consensus       147 ~~~vG--~~~A~~lll~g~~~~a~eA~~~Glv~~vv~~  182 (256)
T TIGR03210       147 ARVVG--EKKAREIWYLCRRYTAQEALAMGLVNAVVPH  182 (256)
T ss_pred             HHHhC--HHHHHHHHHhCCCcCHHHHHHcCCceeeeCH
Confidence            11112  1222333444667999999999999999875

Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.

>PRK08290 enoyl-CoA hydratase; Provisional

Probab=98.05  E-value=3.1e-05  Score=64.83  Aligned_cols=96  Identities=11%  Similarity=0.008  Sum_probs=67.7

Q ss_pred             HHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHH
Q 031001           37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELL  116 (167)
Q Consensus        37 aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~  116 (167)
                      .++..|+.++.||.+.+.|.|.+.|.-|+++|  +-|++.+++.|.+=...++ ..|    .....  +   .       
T Consensus       109 ~~~~~l~~~pkPvIAaVnG~a~GgG~~lalac--D~ria~e~a~f~~pe~~lG-l~~----~~~~~--l---~-------  169 (288)
T PRK08290        109 GMCRRWRDLPKPTIAQVQGACIAGGLMLAWVC--DLIVASDDAFFSDPVVRMG-IPG----VEYFA--H---P-------  169 (288)
T ss_pred             HHHHHHHhCCCCEEEEECCEeeHHHHHHHHhC--CEEEeeCCCEecCcccccC-cCc----chHHH--H---H-------
Confidence            34567888999999999999999999999999  5799999998876322222 211    11000  0   0       


Q ss_pred             HHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCC
Q 031001          117 AKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDS  154 (167)
Q Consensus       117 a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~  154 (167)
                       ...  ......+++-....++|+||+++||||+|++.
T Consensus       170 -~~i--G~~~A~~llltG~~i~A~eA~~~GLV~~vv~~  204 (288)
T PRK08290        170 -WEL--GPRKAKELLFTGDRLTADEAHRLGMVNRVVPR  204 (288)
T ss_pred             -HHh--hHHHHHHHHHcCCCCCHHHHHHCCCccEeeCH
Confidence             011  23344555666778999999999999999875

>PRK07327 enoyl-CoA hydratase; Provisional

Probab=98.05  E-value=5.2e-05  Score=62.69  Aligned_cols=102  Identities=11%  Similarity=0.015  Sum_probs=66.5

Q ss_pred             HHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHH
Q 031001           37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELL  116 (167)
Q Consensus        37 aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~  116 (167)
                      .++..|..++.||.+.+.|.|.+.|.-+.++|  +-|++.++++|.+  |..  ..|-..+..... .+-+         
T Consensus        97 ~~~~~l~~~~kPvIAav~G~a~GgG~~lalac--D~ria~~~a~f~~--pe~--~~Gl~p~~g~~~-~l~~---------  160 (268)
T PRK07327         97 DLVYNVINCDKPIVSAIHGPAVGAGLVAALLA--DISIAAKDARIID--GHT--RLGVAAGDHAAI-VWPL---------  160 (268)
T ss_pred             HHHHHHHcCCCCEEEEEcCeeeehhhHHHHhC--CEEEecCCCEEeC--ccc--ccCCCCCcchhh-HHHH---------
Confidence            35566778899999999999999999999999  5799999998765  431  112111110000 0100         


Q ss_pred             HHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCchHHH
Q 031001          117 AKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDAAY  159 (167)
Q Consensus       117 a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~~~~~  159 (167)
                        ..  ......+++-....|+|+||+++||||+|.++ +++.
T Consensus       161 --~v--G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~l~  198 (268)
T PRK07327        161 --LC--GMAKAKYYLLLCEPVSGEEAERIGLVSLAVDD-DELL  198 (268)
T ss_pred             --Hh--CHHHHHHHHHcCCccCHHHHHHcCCcceecCH-HHHH
Confidence              01  11222334445667999999999999999864 3443

>PRK05864 enoyl-CoA hydratase; Provisional

Probab=98.04  E-value=3.7e-05  Score=63.84  Aligned_cols=100  Identities=16%  Similarity=0.122  Sum_probs=67.3

Q ss_pred             HHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHH
Q 031001           37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELL  116 (167)
Q Consensus        37 aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~  116 (167)
                      .++..|..++.||.+.+.|.|.+.|.-++++|  +-|++.++++|.+-...++..-   .+....            ..+
T Consensus       100 ~~~~~l~~~~kPvIaav~G~a~GgG~~Lalac--D~ria~~~a~f~~pe~~~Gl~p---~~~g~~------------~~l  162 (276)
T PRK05864        100 DVILALRRLHQPVIAAVNGPAIGGGLCLALAA--DIRVASSSAYFRAAGINNGLTA---SELGLS------------YLL  162 (276)
T ss_pred             HHHHHHHhCCCCEEEEECCEeehhHHHHHHhC--CEEEeeCCCEecCcccccCCCC---CCcchh------------eeh
Confidence            45667888999999999999999999999999  5799999998876333222110   011000            001


Q ss_pred             HHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001          117 AKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ  155 (167)
Q Consensus       117 a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~  155 (167)
                      .+..|  .....+++-....++++||+++||||+|.++.
T Consensus       163 ~~~vG--~~~A~~l~l~g~~~~a~eA~~~Glv~~vv~~~  199 (276)
T PRK05864        163 PRAIG--SSRAFEIMLTGRDVDAEEAERIGLVSRQVPDE  199 (276)
T ss_pred             HhhhC--HHHHHHHHHcCCccCHHHHHHcCCcceeeCHH
Confidence            12222  23334444455568999999999999998753

>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated

Probab=98.04  E-value=2e-05  Score=67.20  Aligned_cols=117  Identities=21%  Similarity=0.229  Sum_probs=76.0

Q ss_pred             CCCeEEEEcCCCCCCC-CCCCCCCHHHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeeccc
Q 031001            9 SKPIYLYINSSGTQNE-KKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPV   87 (167)
Q Consensus         9 ~~~I~l~INS~G~~~~-~~~~~G~v~~g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~   87 (167)
                      +-||.-.++|||.--+ ..|--|....+......+-..+.|+.++++|.+.|.|++.+..+  +..++.|+|.+.+-.|.
T Consensus       151 ~lPIVtlvDTpGa~~G~~aE~~G~~~aia~~l~~~a~~~VP~IsVIiGeg~sGGAla~~~a--D~v~m~~~A~~svisPE  228 (319)
T PRK05724        151 GLPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLKVPIICTVIGEGGSGGALAIGVG--DRVLMLEYSTYSVISPE  228 (319)
T ss_pred             CCCEEEEEeCCCCCCCHHHHhccHHHHHHHHHHHHhCCCCCEEEEEeCCccHHHHHHHhcc--CeeeeecCceEeecCHH
Confidence            4699999999993211 11111333333444555557779999999999999999887776  57899999988776664


Q ss_pred             ccCCcCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001           88 VGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ  155 (167)
Q Consensus        88 ~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~  155 (167)
                       +    -++=+   ++.               . ...++..+    ..-+||+++++.|+||+|+...
T Consensus       229 -g----~a~Il---~~~---------------~-~~a~~aae----~~~ita~~l~~~g~iD~II~Ep  268 (319)
T PRK05724        229 -G----CASIL---WKD---------------A-SKAPEAAE----AMKITAQDLKELGIIDEIIPEP  268 (319)
T ss_pred             -H----HHHHH---hcC---------------c-hhHHHHHH----HcCCCHHHHHHCCCceEeccCC
Confidence             2    11111   110               0 11222222    2337999999999999999743

>PRK07260 enoyl-CoA hydratase; Provisional

Probab=98.03  E-value=3.8e-05  Score=62.95  Aligned_cols=98  Identities=17%  Similarity=0.148  Sum_probs=68.3

Q ss_pred             HHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHH
Q 031001           37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELL  116 (167)
Q Consensus        37 aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~  116 (167)
                      .++..|..++.||.+.+.|.|.+.|..+++++  +-|++.+++.|.+  |..  .-|-..+..-..            .+
T Consensus        89 ~~~~~l~~~~kPvIaav~G~a~GgG~~lala~--D~ria~~~a~f~~--pe~--~~Gl~p~~g~~~------------~l  150 (255)
T PRK07260         89 EISFAIKQLPKPVIMCVDGAVAGAAANMAVAA--DFCIASTKTKFIQ--AFV--GVGLAPDAGGLF------------LL  150 (255)
T ss_pred             HHHHHHHcCCCCEEEEecCeeehhhHHHHHhC--CEEEEeCCCEEec--hHh--hcCCCCCCchhh------------hh
Confidence            45667888999999999999999999999999  4799999998765  431  112211110000            01


Q ss_pred             HHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCC
Q 031001          117 AKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDS  154 (167)
Q Consensus       117 a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~  154 (167)
                      .+.-  ......+++-....++++||+++||||+|.++
T Consensus       151 ~~~v--g~~~a~~l~l~g~~~sa~eA~~~Glv~~vv~~  186 (255)
T PRK07260        151 TRAI--GLNRATHLAMTGEALTAEKALEYGFVYRVAES  186 (255)
T ss_pred             HHhh--CHHHHHHHHHhCCccCHHHHHHcCCcceecCH
Confidence            1111  22334556666789999999999999999865

>PRK07854 enoyl-CoA hydratase; Provisional

Probab=98.02  E-value=0.00013  Score=59.55  Aligned_cols=98  Identities=21%  Similarity=0.274  Sum_probs=68.2

Q ss_pred             HHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHH
Q 031001           36 YAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIEL  115 (167)
Q Consensus        36 ~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~  115 (167)
                      ..++..|..++.||.+.+.|.|.+.|.-+.++|  +-|++.++++|.+  |..  ..|-..+..            ....
T Consensus        76 ~~~~~~l~~~~kP~Iaav~G~a~GgG~~lal~c--D~~ia~~~a~f~~--pe~--~~G~~p~~g------------~~~~  137 (243)
T PRK07854         76 IEMLHAIDAAPVPVIAAINGPAIGAGLQLAMAC--DLRVVAPEAYFQF--PVA--KYGIALDNW------------TIRR  137 (243)
T ss_pred             HHHHHHHHhCCCCEEEEecCcccccHHHHHHhC--CEEEEcCCCEEec--ccc--ccccCCCcc------------HHHH
Confidence            456777889999999999999999999999999  5799999998765  442  123221210            0011


Q ss_pred             HHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeC
Q 031001          116 LAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIID  153 (167)
Q Consensus       116 ~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~  153 (167)
                      +.+..|  .....+++-....++++||+++||||+|.+
T Consensus       138 l~~~~G--~~~a~~l~ltg~~~~a~eA~~~Glv~~v~~  173 (243)
T PRK07854        138 LSSLVG--GGRARAMLLGAEKLTAEQALATGMANRIGT  173 (243)
T ss_pred             HHHHhC--HHHHHHHHHcCCCcCHHHHHHCCCcccccC
Confidence            122222  233345556678899999999999999954

>PRK07659 enoyl-CoA hydratase; Provisional

Probab=98.02  E-value=3.2e-05  Score=63.65  Aligned_cols=93  Identities=18%  Similarity=0.133  Sum_probs=66.8

Q ss_pred             HHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCc--CChhHHHHHHHHHHHHHHHHHHH
Q 031001           38 IADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSS--GPVTDMWRKAKDLEANAESYIEL  115 (167)
Q Consensus        38 I~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~--G~~~dl~~~~~~l~~~~~~~~~~  115 (167)
                      ++..|..++.||.+.+.|.|.+.|+-++++|  +.|++.++++|-+....++..-  |...-+                 
T Consensus        90 ~~~~l~~~~~pvIaav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~Gl~p~~g~~~~L-----------------  150 (260)
T PRK07659         90 IVVTLYTMPKLTISAIHGPAAGLGLSIALTA--DYVIADISAKLAMNFIGIGLIPDGGGHFFL-----------------  150 (260)
T ss_pred             HHHHHHhCCCCEEEEecCceecHHHHHHHhC--CEEEEcCCCEEcCchhhcCCCCCCchhhhH-----------------
Confidence            4556778899999999999999999999999  5799999998776444322211  111111                 


Q ss_pred             HHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEe
Q 031001          116 LAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKII  152 (167)
Q Consensus       116 ~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~  152 (167)
                       .+.  .......+++-....|+++||+++||||+|.
T Consensus       151 -~~~--vg~~~a~~l~ltg~~~~a~eA~~~Glv~~vv  184 (260)
T PRK07659        151 -QKR--VGENKAKQIIWEGKKLSATEALDLGLIDEVI  184 (260)
T ss_pred             -HHh--cCHHHHHHHHHhCCccCHHHHHHcCChHHHh
Confidence             111  1234445556667889999999999999998

>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional

Probab=98.00  E-value=3.4e-05  Score=65.77  Aligned_cols=114  Identities=20%  Similarity=0.231  Sum_probs=73.1

Q ss_pred             CCCeEEEEcCCCCCCC-CCCCCCCHHHHHHHHHH---HhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeee
Q 031001            9 SKPIYLYINSSGTQNE-KKESVGAETDAYAIADA---MAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLY   84 (167)
Q Consensus         9 ~~~I~l~INS~G~~~~-~~~~~G~v~~g~aI~~~---i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH   84 (167)
                      .-||.-.++|||.--+ ..|-.|   .+.+|...   +...+.|+.+++.|.+.|.|++.+..+  +..++.|+|.+.+-
T Consensus       154 ~lPIItlvDTpGA~~G~~AE~~G---~~~aiar~l~~~a~~~VP~IsVViGeggsGGAlal~~a--D~V~m~e~a~~sVi  228 (322)
T CHL00198        154 GLPILTFIDTPGAWAGVKAEKLG---QGEAIAVNLREMFSFEVPIICTIIGEGGSGGALGIGIG--DSIMMLEYAVYTVA  228 (322)
T ss_pred             CCCEEEEEeCCCcCcCHHHHHHh---HHHHHHHHHHHHHcCCCCEEEEEeCcccHHHHHhhhcC--CeEEEeCCeEEEec
Confidence            4699999999993211 000011   13345444   456779999999999999999877766  57899999998887


Q ss_pred             cccccCCcCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001           85 LPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ  155 (167)
Q Consensus        85 ~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~  155 (167)
                      .|. +    -++=+   ++.-.+.                .+..    +-.-+||++.+++|+||+|+...
T Consensus       229 sPE-g----~a~Il---~~d~~~a----------------~~aA----~~~~ita~dL~~~giiD~ii~Ep  271 (322)
T CHL00198        229 TPE-A----CAAIL---WKDSKKS----------------LDAA----EALKITSEDLKVLGIIDEIIPEP  271 (322)
T ss_pred             CHH-H----HHHHH---hcchhhH----------------HHHH----HHcCCCHHHHHhCCCCeEeccCC
Confidence            775 2    11111   1110000                1111    22348899999999999999743

>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit

Probab=98.00  E-value=4.2e-05  Score=62.78  Aligned_cols=121  Identities=14%  Similarity=0.154  Sum_probs=80.8

Q ss_pred             CCCCeEEEEcCCCCCCC-CCCCCCCHHHHHHHHHHHhhcC---CCeEEEEccccccHHHHHHhcCCCCceeeecCCceee
Q 031001            8 ASKPIYLYINSSGTQNE-KKESVGAETDAYAIADAMAYCK---SKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKL   83 (167)
Q Consensus         8 ~~~~I~l~INS~G~~~~-~~~~~G~v~~g~aI~~~i~~~~---~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~mi   83 (167)
                      .+.||...+++||--.+ ..|..|....+-.+...+....   .|+.+++.|.+.|.|.+-+..+ .+..++.|++.+..
T Consensus        65 f~~PIv~lvDtpG~~~g~~aE~~G~~~a~A~l~~a~a~a~~~~vP~IsvI~g~a~ggg~lamg~~-ad~v~Alp~A~i~v  143 (238)
T TIGR03134        65 DKRPIVVLVDTPSQAYGRREELLGINQALAHLAKALALARLAGHPVIGLIYGKAISGAFLAHGLQ-ADRIIALPGAMVHV  143 (238)
T ss_pred             CCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEEeCCccHHHHHHHccC-cCeEEEcCCcEEEe
Confidence            57899999999994433 3445556666665556666554   9999999999999888776432 36789999997766


Q ss_pred             ecccccCCcCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhC--CCccccHHHHHHcCcceEEeCCch
Q 031001           84 YLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQ--RPKYMQAKEAIVYGLADKIIDSQD  156 (167)
Q Consensus        84 H~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~--~~~~lsa~EA~e~GliD~I~~~~~  156 (167)
                      -.|. +     +..  +..                   ++.++..+..+  +.+-.+++.+.+.|+||+|+++.+
T Consensus       144 m~~e-~-----aa~--I~~-------------------~~~~~~~e~a~~~~~~a~~~~~~~~~G~vd~vi~~~~  191 (238)
T TIGR03134       144 MDLE-S-----MAR--VTK-------------------RSVEELEALAKSSPVFAPGIENFVKLGGVHALLDVAD  191 (238)
T ss_pred             cCHH-H-----HHH--HHc-------------------cCHhHHHHHHHhhhhhccCHHHHHhCCCccEEeCCCC
Confidence            5553 1     111  111                   22222322222  235567889999999999998654

Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.

>PRK06072 enoyl-CoA hydratase; Provisional

Probab=97.99  E-value=7.2e-05  Score=61.19  Aligned_cols=94  Identities=15%  Similarity=0.088  Sum_probs=63.1

Q ss_pred             HHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHH
Q 031001           37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELL  116 (167)
Q Consensus        37 aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~  116 (167)
                      .++..|..++.||.+.+.|.|.+.|.-++++|  +-|++.+++.|.+..+.++..    .+..-. ..+           
T Consensus        80 ~~~~~l~~~~kPvIaav~G~a~GgG~~lal~c--D~~ia~~~a~f~~~~~~~Gl~----p~~g~~-~~l-----------  141 (248)
T PRK06072         80 PIIREIRFSDKIYISAINGVTAGACIGIALST--DFKFASRDVKFVTAFQRLGLA----SDTGVA-YFL-----------  141 (248)
T ss_pred             HHHHHHHhCCCCEEEEECCeeehHHHHHHHhC--CEEEEcCCCEEecchhhcCcC----CCchHH-HHH-----------
Confidence            45667788899999999999999999999999  579999999987644433222    111100 001           


Q ss_pred             HHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEE
Q 031001          117 AKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKI  151 (167)
Q Consensus       117 a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I  151 (167)
                      .+..|  . ...+++-....++|+||+++||||++
T Consensus       142 ~~~~g--~-~a~~lll~g~~~~a~eA~~~Glv~~~  173 (248)
T PRK06072        142 LKLTG--Q-RFYEILVLGGEFTAEEAERWGLLKIS  173 (248)
T ss_pred             HHHhh--H-HHHHHHHhCCccCHHHHHHCCCcccc
Confidence            11112  1 12233434556899999999999965

>PRK12478 enoyl-CoA hydratase; Provisional

Probab=97.99  E-value=3.6e-05  Score=64.77  Aligned_cols=94  Identities=10%  Similarity=-0.086  Sum_probs=68.9

Q ss_pred             HHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHHH
Q 031001           38 IADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLA  117 (167)
Q Consensus        38 I~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a  117 (167)
                      .+..|..++.||.+.+.|.|.+.|.-+.++|  +-|++.++++|.+-...+   .|-....    -.+            
T Consensus       104 ~~~~l~~~~kPvIAaV~G~a~GgG~~Lalac--D~ria~~~A~f~~pe~~l---~G~~~~~----~~~------------  162 (298)
T PRK12478        104 KFMAIWRASKPVIAQVHGWCVGGASDYALCA--DIVIASDDAVIGTPYSRM---WGAYLTG----MWL------------  162 (298)
T ss_pred             HHHHHHhCCCCEEEEEccEEehhHHHHHHHC--CEEEEcCCcEEecccccc---ccCCchh----HHH------------
Confidence            4566888999999999999999999999999  579999999887733332   1211100    000            


Q ss_pred             HHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCC
Q 031001          118 KGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDS  154 (167)
Q Consensus       118 ~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~  154 (167)
                      .+  .......+++-....++|+||+++||||+|+++
T Consensus       163 ~~--vG~~~A~~llltg~~i~A~eA~~~GLV~~vv~~  197 (298)
T PRK12478        163 YR--LSLAKVKWHSLTGRPLTGVQAAEAELINEAVPF  197 (298)
T ss_pred             HH--hhHHHHHHHHHcCCccCHHHHHHcCCcceecCH
Confidence            11  134455667777889999999999999999875

>PRK08788 enoyl-CoA hydratase; Validated

Probab=97.98  E-value=8.4e-05  Score=62.45  Aligned_cols=92  Identities=16%  Similarity=0.079  Sum_probs=63.7

Q ss_pred             hcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 031001           44 YCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKP  123 (167)
Q Consensus        44 ~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a~~tg~~  123 (167)
                      .++.||.+.+.|.|.+.|+-++++|  +-|++.++++|.+  |..  ..|-..+..-            ...+.+..|  
T Consensus       119 ~~pkPvIAaV~G~a~GgG~~Lalac--D~ria~~~a~f~~--pev--~lGl~p~~g~------------~~~l~~~vG--  178 (287)
T PRK08788        119 GAGAISIALVQGDALGGGFEAALSH--HTIIAERGAKMGF--PEI--LFNLFPGMGA------------YSFLARRVG--  178 (287)
T ss_pred             CCCCCEEEEECCeeehHHHHHHHhC--CEEEecCCCEeeC--chh--hhCcCCCchH------------HHHHHHHhh--
Confidence            5789999999999999999999999  5799999987665  442  1232222110            011222222  


Q ss_pred             HHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001          124 KEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ  155 (167)
Q Consensus       124 ~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~  155 (167)
                      .....+++-....|+++||+++||||+|.++.
T Consensus       179 ~~~A~ellltG~~l~A~eA~~~GLV~~vv~~~  210 (287)
T PRK08788        179 PKLAEELILSGKLYTAEELHDMGLVDVLVEDG  210 (287)
T ss_pred             HHHHHHHHHcCCCCCHHHHHHCCCCcEecCch
Confidence            23345556667789999999999999998754

>PRK05870 enoyl-CoA hydratase; Provisional

Probab=97.97  E-value=2e-05  Score=64.50  Aligned_cols=96  Identities=18%  Similarity=0.102  Sum_probs=66.1

Q ss_pred             HHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHH
Q 031001           37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELL  116 (167)
Q Consensus        37 aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~  116 (167)
                      ..+..|..++.||.+.+.|.|.+.|.-++++|  +-|++.++++|.+....++..-+-..-      .          .+
T Consensus        86 ~~~~~l~~~~kPvIaav~G~a~GgG~~lal~c--D~ria~~~a~f~~pe~~~G~~p~~g~~------~----------~l  147 (249)
T PRK05870         86 DGFLAVASCPLPTIAAVNGAAVGAGLNLALAA--DVRIAGPKALFDARFQKLGLHPGGGAT------W----------ML  147 (249)
T ss_pred             HHHHHHHhCCCCEEEEECCEeEchhHHHHHhC--CEEEEcCCCEEeCcccccCcCCCCcce------e----------eH
Confidence            34556778899999999999999999999999  579999999887644433222111000      0          01


Q ss_pred             HHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEe
Q 031001          117 AKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKII  152 (167)
Q Consensus       117 a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~  152 (167)
                      .+..  ......+++-....++++||+++||||+|.
T Consensus       148 ~~~~--G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv  181 (249)
T PRK05870        148 QRAV--GPQVARAALLFGMRFDAEAAVRHGLALMVA  181 (249)
T ss_pred             Hhhh--CHHHHHHHHHhCCccCHHHHHHcCCHHHHH
Confidence            1111  223334445556689999999999999998

>PRK08272 enoyl-CoA hydratase; Provisional

Probab=97.97  E-value=8.1e-05  Score=62.61  Aligned_cols=95  Identities=9%  Similarity=-0.024  Sum_probs=69.2

Q ss_pred             HHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHH
Q 031001           37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELL  116 (167)
Q Consensus        37 aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~  116 (167)
                      .++..|..++.||.+.+.|.|.+.|+-++++|  +-|++.+++.|.+  |.. ...|-+...            .    +
T Consensus       118 ~~~~~l~~~~kPvIAaV~G~a~GgG~~lalac--D~~ias~~a~f~~--pe~-~~gg~~~~~------------~----~  176 (302)
T PRK08272        118 RGFMSLWHAHKPTVAKVHGYCVAGGTDIALHC--DQVIAADDAKIGY--PPT-RVWGVPATG------------M----W  176 (302)
T ss_pred             HHHHHHHhCCCCEEEEEccEeehhhHHHHHhC--CEEEEeCCCEecC--cch-hcccCChHH------------H----H
Confidence            45677889999999999999999999999999  5799999997755  441 112222110            0    1


Q ss_pred             HHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCC
Q 031001          117 AKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDS  154 (167)
Q Consensus       117 a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~  154 (167)
                      ....  ......+++-....++++||+++||||+|+++
T Consensus       177 ~~~v--G~~~A~~llltG~~i~a~eA~~~GLv~~vv~~  212 (302)
T PRK08272        177 AYRL--GPQRAKRLLFTGDCITGAQAAEWGLAVEAVPP  212 (302)
T ss_pred             HHHh--hHHHHHHHHHcCCccCHHHHHHcCCCceecCH
Confidence            1112  33444566777889999999999999999864

>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase

Probab=97.96  E-value=9.6e-05  Score=60.66  Aligned_cols=98  Identities=15%  Similarity=0.156  Sum_probs=68.7

Q ss_pred             HHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHH
Q 031001           37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELL  116 (167)
Q Consensus        37 aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~  116 (167)
                      .++..|..++.||.+.+.|.|.+.|.-+.++|  +-|++.++++|.+-...+    |-.....  ..           .+
T Consensus        80 ~~~~~l~~~~kPvIaav~G~a~GgG~~lal~c--D~~ia~~~a~f~~pe~~~----Gl~p~~~--~~-----------~l  140 (251)
T TIGR03189        80 KLVIAMLDSPVPILVAVRGQCLGGGLEVAAAG--NLMFAAPDAKLGQPEIVL----GVFAPAA--SC-----------LL  140 (251)
T ss_pred             HHHHHHHhCCCCEEEEecCeeeeHHHHHHHhC--CEEEEcCCCEEeCchhhc----CCCCCch--HH-----------HH
Confidence            45667888999999999999999999999999  579999999876632222    2211110  00           11


Q ss_pred             HHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001          117 AKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ  155 (167)
Q Consensus       117 a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~  155 (167)
                      .+..|  .....+++-...-++++||+++||||+|.++.
T Consensus       141 ~~~vg--~~~a~~l~ltg~~~~a~eA~~~Glv~~v~~~~  177 (251)
T TIGR03189       141 PERMG--RVAAEDLLYSGRSIDGAEGARIGLANAVAEDP  177 (251)
T ss_pred             HHHhC--HHHHHHHHHcCCCCCHHHHHHCCCcceecCcH
Confidence            22222  23345556666779999999999999998753

This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.

>PLN02600 enoyl-CoA hydratase

Probab=97.96  E-value=0.00011  Score=60.22  Aligned_cols=99  Identities=15%  Similarity=0.088  Sum_probs=67.1

Q ss_pred             HHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHH
Q 031001           37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELL  116 (167)
Q Consensus        37 aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~  116 (167)
                      .++..|..++.||.+.+.|.|.+.|.-+.+++  +-|++.++++|.+  |..  ..|-..+..-    ...        +
T Consensus        79 ~~~~~l~~~~kPvIAav~G~a~GgG~~lala~--D~~ia~~~a~f~~--pe~--~~Gl~p~~g~----~~~--------l  140 (251)
T PLN02600         79 STFSSLEALSIPTIAVVEGAALGGGLELALSC--DLRICGEEAVFGL--PET--GLAIIPGAGG----TQR--------L  140 (251)
T ss_pred             HHHHHHHhCCCCEEEEecCeecchhHHHHHhC--CEEEeeCCCEEeC--ccc--ccCcCCCchH----HHH--------H
Confidence            35667788899999999999999999999999  5799999998877  432  1122111100    000        1


Q ss_pred             HHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001          117 AKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ  155 (167)
Q Consensus       117 a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~  155 (167)
                      .+..  ....-.+++-....++++||+++||||+|.++.
T Consensus       141 ~~~~--G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~  177 (251)
T PLN02600        141 PRLV--GRSRAKELIFTGRRIGAREAASMGLVNYCVPAG  177 (251)
T ss_pred             HHHh--CHHHHHHHHHhCCccCHHHHHHcCCCcEeeChh
Confidence            1111  122234445556779999999999999998754

>PRK08321 naphthoate synthase; Validated

Probab=97.92  E-value=0.00013  Score=61.42  Aligned_cols=97  Identities=19%  Similarity=0.134  Sum_probs=66.3

Q ss_pred             HHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeee-cCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHH
Q 031001           38 IADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQ-PNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELL  116 (167)
Q Consensus        38 I~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~-p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~  116 (167)
                      +...|..++.||.+.+.|.|.+.|.-|+++|  +-|++. ++++|.+-...++...+-..-                ..+
T Consensus       127 ~~~~l~~~pkP~IAaV~G~a~GgG~~lalac--D~ria~~~~a~f~~pe~~~Gl~p~~~~~----------------~~L  188 (302)
T PRK08321        127 VQRLIRFMPKVVIAVVPGWAAGGGHSLHVVC--DLTLASREHARFKQTDADVGSFDGGYGS----------------AYL  188 (302)
T ss_pred             HHHHHHcCCCCEEEEEcCeeehHHHHHHHhC--CEEEEecCCCEEECCccccccCCCchHH----------------HHH
Confidence            4566788899999999999999999999999  479998 588876633322211111000                001


Q ss_pred             HHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCC
Q 031001          117 AKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDS  154 (167)
Q Consensus       117 a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~  154 (167)
                      .+..|  .....+++-....++|+||+++||||+|.++
T Consensus       189 ~r~vG--~~~A~~l~ltG~~~~A~eA~~~GLv~~vv~~  224 (302)
T PRK08321        189 ARQVG--QKFAREIFFLGRTYSAEEAHDMGAVNAVVPH  224 (302)
T ss_pred             HHHhC--HHHHHHHHHcCCccCHHHHHHCCCceEeeCH
Confidence            11122  2233455556778999999999999999975

>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase

Probab=97.92  E-value=9.5e-05  Score=63.95  Aligned_cols=100  Identities=17%  Similarity=0.080  Sum_probs=68.2

Q ss_pred             HHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCC-hhHHHHHHHHHHHHHHHHHH
Q 031001           36 YAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGP-VTDMWRKAKDLEANAESYIE  114 (167)
Q Consensus        36 ~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~-~~dl~~~~~~l~~~~~~~~~  114 (167)
                      ..+++.|..++.||.+.+.|.|.+.|.-|.++|  +-|++.++++|-+-.+.++..-+- ...      .|-+       
T Consensus       114 ~~l~~~i~~~pKPVIAAVnG~AiGGGleLALaC--DlrIAse~A~Fg~PE~rlGl~P~~Ggt~------rLpr-------  178 (360)
T TIGR03200       114 NDMVSAILGCDKPVICRVNGMRIGGGQEIGMAA--DFTIAQDLANFGQAGPKHGSAPIGGATD------FLPL-------  178 (360)
T ss_pred             HHHHHHHHhCCCCEEEEECCEeeeHHHHHHHhC--CEEEEcCCCEEeCchhccCCCCCccHHH------HHHH-------
Confidence            356778889999999999999999999999999  579999999887744443222111 111      0111       


Q ss_pred             HHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCch
Q 031001          115 LLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQD  156 (167)
Q Consensus       115 ~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~~  156 (167)
                          ..|  ......++-....++|+||+++||||+|.++.+
T Consensus       179 ----lvG--~~rA~~llltGe~~sA~EA~~~GLVd~VVp~~~  214 (360)
T TIGR03200       179 ----MIG--CEQAMVSGTLCEPWSAHKAKRLGIIMDVVPALK  214 (360)
T ss_pred             ----hhC--HHHHHHHHHhCCcCcHHHHHHcCChheecCchh
Confidence                011  111222233456899999999999999987644

Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated

Probab=97.92  E-value=8.2e-05  Score=61.49  Aligned_cols=101  Identities=16%  Similarity=0.098  Sum_probs=69.1

Q ss_pred             HHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHH
Q 031001           37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELL  116 (167)
Q Consensus        37 aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~  116 (167)
                      .++..|..++.||.+.+.|.|.+.|.-++++|  +-|++.++++|.+  |..  ..|-..+..  ...+           
T Consensus        92 ~~~~~l~~~~kPvIaaV~G~a~GgG~~lal~~--D~~ia~~~a~f~~--pe~--~~Gi~p~~~--~~~l-----------  152 (265)
T PRK05674         92 ELMYNLYRLKIPTLAVVQGAAFGGALGLISCC--DMAIGADDAQFCL--SEV--RIGLAPAVI--SPFV-----------  152 (265)
T ss_pred             HHHHHHHcCCCCEEEEEcCEEEechhhHhhhc--CEEEEeCCCEEeC--ccc--ccCCCcchh--HHHH-----------
Confidence            45667788899999999999999999999999  5799999998877  542  123222221  0011           


Q ss_pred             HHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCchHHH
Q 031001          117 AKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDAAY  159 (167)
Q Consensus       117 a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~~~~~  159 (167)
                      .+..|  .....+++-...-|+++||+++||||+|.+. +++.
T Consensus       153 ~~~vG--~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~l~  192 (265)
T PRK05674        153 VKAIG--ERAARRYALTAERFDGRRARELGLLAESYPA-AELE  192 (265)
T ss_pred             HHHhC--HHHHHHHHHhCcccCHHHHHHCCCcceecCH-HHHH
Confidence            11112  2233344445667999999999999999874 4443

>PRK07799 enoyl-CoA hydratase; Provisional

Probab=97.90  E-value=7.5e-05  Score=61.50  Aligned_cols=94  Identities=12%  Similarity=0.002  Sum_probs=65.4

Q ss_pred             HhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHHHHHhC
Q 031001           42 MAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTG  121 (167)
Q Consensus        42 i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a~~tg  121 (167)
                      +..++.||.+.+.|.|.+.|.-++++|  +-|++.++++|.+-...+    |-..+..... .           +.+.. 
T Consensus        96 ~~~~~kpvIaav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~----Gl~p~~g~~~-~-----------l~r~v-  156 (263)
T PRK07799         96 GRRLTKPLIAAVEGPAIAGGTEILQGT--DIRVAGESAKFGISEAKW----SLFPMGGSAV-R-----------LVRQI-  156 (263)
T ss_pred             HhcCCCCEEEEECCeEeccHHHHHHhC--CEEEecCCCEecCccccc----CcCCCccHHH-H-----------HHHHh-
Confidence            467889999999999999999999999  579999999876633332    2211111000 0           11111 


Q ss_pred             CCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001          122 KPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ  155 (167)
Q Consensus       122 ~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~  155 (167)
                       ......+++-....|+++||+++||||+|.++.
T Consensus       157 -G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~  189 (263)
T PRK07799        157 -PYTVACDLLLTGRHITAAEAKEIGLIGHVVPDG  189 (263)
T ss_pred             -CHHHHHHHHHcCCCCCHHHHHHcCCccEecCcc
Confidence             233345566667789999999999999998764

>KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]

Probab=97.87  E-value=4.9e-05  Score=63.35  Aligned_cols=101  Identities=23%  Similarity=0.205  Sum_probs=76.6

Q ss_pred             HHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccC--CcCChhHHHHHHHHHHHHHHHHH
Q 031001           36 YAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGR--SSGPVTDMWRKAKDLEANAESYI  113 (167)
Q Consensus        36 ~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~--~~G~~~dl~~~~~~l~~~~~~~~  113 (167)
                      +..++.+..++.||.+-+.|.|.+.|+-+.+.||  -|++.|+|.|++-++.++.  .+|-..-+..             
T Consensus       117 ~~~~~~~~~~~KPvIaainG~AlgGG~ELalmCD--irva~~~Akfg~~~~~~Gi~p~~GGT~rl~r-------------  181 (290)
T KOG1680|consen  117 LRVWDLVSRLKKPVIAAINGFALGGGLELALMCD--IRVAGEGAKFGFFEIRMGIIPSWGGTQRLPR-------------  181 (290)
T ss_pred             cchhhhhhhcccceeEeeeceeeccchhhhhhcc--eEeccCCCeecccccccCCccCCCchhhHHH-------------
Confidence            4456677788999999999999999999999995  6999999999998877542  2333322211             


Q ss_pred             HHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCchHH
Q 031001          114 ELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDAA  158 (167)
Q Consensus       114 ~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~~~~  158 (167)
                       +      ..+..-.+++-....++|+||++.|||++|.+..+.+
T Consensus       182 -~------vG~s~Ale~~ltg~~~~AqeA~~~GlVn~Vvp~~~~l  219 (290)
T KOG1680|consen  182 -I------VGKSRALEMILTGRRLGAQEAKKIGLVNKVVPSGDAL  219 (290)
T ss_pred             -H------hChHHHHHHHHhcCcccHHHHHhCCceeEeecchhHH
Confidence             1      1233345667778899999999999999999877644

>PRK07827 enoyl-CoA hydratase; Provisional

Probab=97.83  E-value=0.00012  Score=60.24  Aligned_cols=97  Identities=18%  Similarity=0.074  Sum_probs=63.5

Q ss_pred             HHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHH
Q 031001           37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELL  116 (167)
Q Consensus        37 aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~  116 (167)
                      .++..|..++.||.+.+.|.|.+.|.-++++|  +-|++.+++.|.+=...+    |-..+.... ..+.+    +..  
T Consensus        92 ~~~~~l~~~~kPvIaav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~----Gl~p~~g~~-~~l~~----l~~--  158 (260)
T PRK07827         92 ALLRAIVELPKPVIAAIDGHVRAGGFGLVGAC--DIVVAGPESTFALTEARI----GVAPAIISL-TLLPR----LSP--  158 (260)
T ss_pred             HHHHHHHhCCCCEEEEEcCeeecchhhHHHhC--CEEEEcCCCEEeCccccc----CCCCCcccc-hhHHh----hhH--
Confidence            45667788899999999999999999999999  579999999776632222    222121100 00100    000  


Q ss_pred             HHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCC
Q 031001          117 AKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDS  154 (167)
Q Consensus       117 a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~  154 (167)
                              ....+++-....++|+||+++||||+|.+.
T Consensus       159 --------~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~  188 (260)
T PRK07827        159 --------RAAARYYLTGEKFGAAEAARIGLVTAAADD  188 (260)
T ss_pred             --------HHHHHHHHhCCccCHHHHHHcCCcccchHH
Confidence                    011223334566899999999999999643

>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional

Probab=97.82  E-value=8e-05  Score=69.17  Aligned_cols=117  Identities=18%  Similarity=0.138  Sum_probs=73.8

Q ss_pred             CCCeEEEEcCCCCCCC-CCCCCCCHHHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeeccc
Q 031001            9 SKPIYLYINSSGTQNE-KKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPV   87 (167)
Q Consensus         9 ~~~I~l~INS~G~~~~-~~~~~G~v~~g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~   87 (167)
                      .-||.-+|+|||.--+ ..|-.|...+......++-....|+.++++|.|+|.|++.++.+  +..++.|++.+.+-.|.
T Consensus       242 gLPIVtLVDTpGA~pG~~AEe~Gq~~aIArnl~amasl~VP~ISVViGeggSGGAlA~g~a--D~VlMle~A~~sVisPE  319 (762)
T PLN03229        242 GFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIVSIVIGEGGSGGALAIGCA--NKLLMLENAVFYVASPE  319 (762)
T ss_pred             CCCEEEEEECCCcCCCchhHHHhHHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhcC--CEEEEecCCeEEecCHH
Confidence            4699999999994321 12222333333333444446679999999999999999988777  56888999887665554


Q ss_pred             ccCCcCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001           88 VGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ  155 (167)
Q Consensus        88 ~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~  155 (167)
                       +       -..+.++.-.                ...+..+    -.-+||++-+++|+||.|+...
T Consensus       320 -g-------aAsILwkd~~----------------~A~eAAe----~lkiTa~dL~~lGiiD~IIpEp  359 (762)
T PLN03229        320 -A-------CAAILWKSAK----------------AAPKAAE----KLRITAQELCRLQIADGIIPEP  359 (762)
T ss_pred             -H-------HHHHHhcCcc----------------cHHHHHH----HcCCCHHHHHhCCCCeeeccCC
Confidence             1       1111111111                1111122    2348899999999999999743

>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional

Probab=97.79  E-value=0.00014  Score=66.20  Aligned_cols=105  Identities=15%  Similarity=0.077  Sum_probs=67.6

Q ss_pred             HHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecC--CceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHH
Q 031001           38 IADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPN--SSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIEL  115 (167)
Q Consensus        38 I~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~--s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~  115 (167)
                      +.+.|+.++.||.+.+.|.|.+.|..+.++|  +.|++.++  ++|.+  |.. ...|-..+.... ..           
T Consensus       115 l~~~l~~~pkPvIAAVnG~a~GGG~~LALac--D~rIas~~~~a~fg~--pEv-~~~Gl~P~~gg~-~r-----------  177 (550)
T PRK08184        115 IEDSSRHSGLKFIAAVNGTCAGGGYELALAC--DEIVLVDDRSSAVSL--PEV-PLLGVLPGTGGL-TR-----------  177 (550)
T ss_pred             HHHHHHhCCCCEEEEECCEeehHHHHHHHhC--CEEEEecCCCcEEEc--cch-hccccCCCcchH-HH-----------
Confidence            4566778899999999999999999999999  57999987  55544  432 112222121100 00           


Q ss_pred             HHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCchHHHh
Q 031001          116 LAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDAAYE  160 (167)
Q Consensus       116 ~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~~~~~~  160 (167)
                      +............+++-....|+++||+++||||+|.++. ++.+
T Consensus       178 l~~~~~vg~~~A~~llltG~~i~AeeA~~~GLVd~vv~~d-~l~~  221 (550)
T PRK08184        178 VTDKRKVRRDLADIFCTIEEGVRGKRAVDWRLVDEVVKPS-KFDA  221 (550)
T ss_pred             hhhhhhcCHHHHHHHHHhCCcccHHHHHHcCCccEeeCHH-HHHH
Confidence            1111112233334445567789999999999999999753 4443

>PRK08259 enoyl-CoA hydratase; Provisional

Probab=97.78  E-value=0.00012  Score=60.17  Aligned_cols=92  Identities=16%  Similarity=0.090  Sum_probs=63.4

Q ss_pred             hcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 031001           44 YCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKP  123 (167)
Q Consensus        44 ~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a~~tg~~  123 (167)
                      .++.||.+.+.|.|.+.|.-++++|  +.|++.++++|.+-...+    |-.....-    .        ..+.+..|  
T Consensus        91 ~~~kPvIaav~G~a~GgG~~lalac--D~~ia~~~a~f~~pe~~~----Gl~p~~g~----~--------~~l~~~iG--  150 (254)
T PRK08259         91 RLSKPVIAAVSGYAVAGGLELALWC--DLRVAEEDAVFGVFCRRW----GVPLIDGG----T--------VRLPRLIG--  150 (254)
T ss_pred             cCCCCEEEEECCEEEhHHHHHHHhC--CEEEecCCCEecCccccc----CCCCCccH----H--------HHHHHHhC--
Confidence            5789999999999999999999999  579999999876532222    21111000    0        00111222  


Q ss_pred             HHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001          124 KEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ  155 (167)
Q Consensus       124 ~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~  155 (167)
                      ...-.+++-....|+++||+++||||+|++..
T Consensus       151 ~~~a~~lll~g~~~~a~eA~~~Glv~~vv~~~  182 (254)
T PRK08259        151 HSRAMDLILTGRPVDADEALAIGLANRVVPKG  182 (254)
T ss_pred             HHHHHHHHHcCCccCHHHHHHcCCCCEeeChh
Confidence            33445556667789999999999999998754

>PRK08252 enoyl-CoA hydratase; Provisional

Probab=97.67  E-value=0.00038  Score=57.08  Aligned_cols=93  Identities=14%  Similarity=0.035  Sum_probs=63.9

Q ss_pred             hhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 031001           43 AYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGK  122 (167)
Q Consensus        43 ~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a~~tg~  122 (167)
                      ..++.||.+.+.|.|.+.|.-++++|  +-|++.++++|.+  |..  ..|-..+..-.            ..+.+..| 
T Consensus        88 ~~~~kPvIaav~G~a~GgG~~lalac--D~~ia~~~a~f~~--pe~--~~Gl~p~~g~~------------~~l~~~vg-  148 (254)
T PRK08252         88 RPPRKPLIAAVEGYALAGGFELALAC--DLIVAARDAKFGL--PEV--KRGLVAAGGGL------------LRLPRRIP-  148 (254)
T ss_pred             hcCCCCEEEEECCEEehHHHHHHHhC--CEEEEeCCCEEeC--chh--hcCCCCCchHH------------HHHHHHcC-
Confidence            35789999999999999999999999  5799999998765  432  12322221100            00111122 


Q ss_pred             CHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001          123 PKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ  155 (167)
Q Consensus       123 ~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~  155 (167)
                       ...-.+++-...-++++||+++||||+|.++.
T Consensus       149 -~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~  180 (254)
T PRK08252        149 -YHIAMELALTGDMLTAERAHELGLVNRLTEPG  180 (254)
T ss_pred             -HHHHHHHHHcCCccCHHHHHHcCCcceecCcc
Confidence             23345555567789999999999999998754

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=97.62  E-value=0.00059  Score=63.90  Aligned_cols=99  Identities=17%  Similarity=0.209  Sum_probs=68.5

Q ss_pred             HHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHH
Q 031001           37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELL  116 (167)
Q Consensus        37 aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~  116 (167)
                      .++..|..++.||.+.+.|.|.+.|.-++++|  +-|++.++++|.+=...+    |-..+..-.. .|           
T Consensus        93 ~~~~~i~~~~kPvIAav~G~a~GgG~~LAlac--D~ria~~~a~f~~pe~~l----Gl~p~~g~~~-~L-----------  154 (715)
T PRK11730         93 SIFNRLEDLPVPTVAAINGYALGGGCECVLAT--DYRVASPDARIGLPETKL----GIMPGFGGTV-RL-----------  154 (715)
T ss_pred             HHHHHHHcCCCCEEEEECCEeehHHHHHHHhC--CEEEEcCCCEEeCchhhc----CCCCCchHHH-HH-----------
Confidence            45677888999999999999999999999999  579999999877633322    2211111000 01           


Q ss_pred             HHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001          117 AKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ  155 (167)
Q Consensus       117 a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~  155 (167)
                      .+..|  .....+++-....++|+||+++||||+|.+..
T Consensus       155 ~rlvG--~~~A~~llltG~~~~A~eA~~~GLv~~vv~~~  191 (715)
T PRK11730        155 PRLIG--ADNALEWIAAGKDVRAEDALKVGAVDAVVAPE  191 (715)
T ss_pred             HHhcC--HHHHHHHHHcCCcCCHHHHHHCCCCeEecCHH
Confidence            11112  22334555567789999999999999998653

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=97.61  E-value=0.00041  Score=64.87  Aligned_cols=99  Identities=19%  Similarity=0.171  Sum_probs=68.5

Q ss_pred             HHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCC--ceeeecccccCCcCChhHHHHHHHHHHHHHHHHHH
Q 031001           37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNS--STKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIE  114 (167)
Q Consensus        37 aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s--~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~  114 (167)
                      .+++.|..++.||.+.+.|.|.+.|.-++++|  +.|++.+++  +|.+....++..-|-..-                .
T Consensus        92 ~~~~~i~~~~kPvIAaV~G~a~GgG~~Lalac--D~ria~~~a~a~fg~pe~~lGl~p~~gg~----------------~  153 (708)
T PRK11154         92 QLFAEIEALPIPVVAAIHGACLGGGLELALAC--HYRVCTDDPKTVLGLPEVQLGLLPGSGGT----------------Q  153 (708)
T ss_pred             HHHHHHHhCCCCEEEEECCeeechHHHHHHhC--CEEEEeCCCCceEeCccccCCCCCCccHH----------------h
Confidence            46788899999999999999999999999999  579999986  454433332221111100                0


Q ss_pred             HHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001          115 LLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ  155 (167)
Q Consensus       115 ~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~  155 (167)
                      .+.+..|  .....+++-....++|+||+++||||+|++..
T Consensus       154 ~L~r~vG--~~~A~~llltG~~i~a~eA~~~GLv~~vv~~~  192 (708)
T PRK11154        154 RLPRLIG--VSTALDMILTGKQLRAKQALKLGLVDDVVPHS  192 (708)
T ss_pred             HHHhhcC--HHHHHHHHHhCCcCCHHHHHHCCCCcEecChH
Confidence            1111122  23334566677889999999999999998753

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=97.61  E-value=0.00066  Score=63.42  Aligned_cols=100  Identities=21%  Similarity=0.199  Sum_probs=67.3

Q ss_pred             HHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeeccc--ccCCcCChhHHHHHHHHHHHHHHHHH
Q 031001           36 YAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPV--VGRSSGPVTDMWRKAKDLEANAESYI  113 (167)
Q Consensus        36 ~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~--~~~~~G~~~dl~~~~~~l~~~~~~~~  113 (167)
                      ..++..|..++.||.+.+.|.|.+.|.-++++|  +.|++.+++...+..|.  ++..-+...-                
T Consensus        86 ~~~~~~l~~~~kPvIAaVnG~a~GgG~~LaLac--D~ria~~~~~a~fg~pev~lGl~p~~g~~----------------  147 (699)
T TIGR02440        86 QVLFAELEALPIPVVAAIHGACLGGGLELALAC--HSRVCSDDDKTVLGLPEVQLGLLPGSGGT----------------  147 (699)
T ss_pred             HHHHHHHHhCCCCEEEEECCEeecHHHHHHHhC--CEEEEcCCCCcEEechhhcccCCCCccHH----------------
Confidence            446778999999999999999999999999999  57999987433333343  2211111100                


Q ss_pred             HHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001          114 ELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ  155 (167)
Q Consensus       114 ~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~  155 (167)
                      ..+.+..|  ...-.+++-....++++||+++||||+|.++.
T Consensus       148 ~~L~r~vG--~~~A~~llltG~~~~a~eA~~~GLV~~vv~~~  187 (699)
T TIGR02440       148 QRLPRLIG--VSTALDMILTGKQLRAKQALKLGLVDDVVPQS  187 (699)
T ss_pred             HHHHHhcC--HHHHHHHHHcCCcCCHHHHHhCCCCcEecChh
Confidence            00111111  22234555567789999999999999999764

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional

Probab=97.56  E-value=0.00024  Score=60.94  Aligned_cols=96  Identities=16%  Similarity=0.104  Sum_probs=65.8

Q ss_pred             HHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCC--cCChhHHHHHHHHHHHHHHHHHH
Q 031001           37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRS--SGPVTDMWRKAKDLEANAESYIE  114 (167)
Q Consensus        37 aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~--~G~~~dl~~~~~~l~~~~~~~~~  114 (167)
                      .++..|..++.||.+.+.|.|.++|+-+.++|  +-|++.++++|.+=...++..  .|...-+.    .+         
T Consensus        91 ~~~~~i~~~~kPvIAaVnG~a~GgG~~Lalac--D~ria~~~a~f~~pe~~lGl~P~~g~~~~L~----r~---------  155 (342)
T PRK05617         91 RLNALIARYPKPYIALMDGIVMGGGVGISAHG--SHRIVTERTKMAMPETGIGFFPDVGGTYFLS----RA---------  155 (342)
T ss_pred             HHHHHHHhCCCCEEEEEcCEEEccHhHHhhhC--CEEEEcCCCEeeCCccccCcCCCccceeEeh----hc---------
Confidence            35567888999999999999999999999999  579999999887633332221  11111110    00         


Q ss_pred             HHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001          115 LLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ  155 (167)
Q Consensus       115 ~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~  155 (167)
                           -|   ..-.+++-....++|+||+++||||+|+++.
T Consensus       156 -----~g---~~a~~llltG~~i~A~eA~~~GLv~~vv~~~  188 (342)
T PRK05617        156 -----PG---ALGTYLALTGARISAADALYAGLADHFVPSA  188 (342)
T ss_pred             -----cc---HHHHHHHHcCCCCCHHHHHHcCCcceecCHH
Confidence                 00   0112333446679999999999999998753

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=97.56  E-value=0.00087  Score=62.81  Aligned_cols=100  Identities=17%  Similarity=0.170  Sum_probs=69.4

Q ss_pred             HHHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHH
Q 031001           35 AYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIE  114 (167)
Q Consensus        35 g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~  114 (167)
                      +..+++.|..++.||.+.+.|.|.+.|.-++++|  +.|++.++++|.+=...++..-|-..-.     .|         
T Consensus        91 ~~~~~~~i~~~pkPvIAai~G~alGGGleLalac--D~ria~~~a~fglPEv~lGl~Pg~Ggt~-----rL---------  154 (714)
T TIGR02437        91 ANSIFNKLEDLPVPTVAAINGIALGGGCECVLAT--DFRIADDTAKIGLPETKLGIMPGFGGTV-----RL---------  154 (714)
T ss_pred             HHHHHHHHHhCCCCEEEEECCeeecHHHHHHHhC--CEEEEeCCCEEecchhhcCCCCCccHHH-----HH---------
Confidence            4467888999999999999999999999999999  5899999998877333322211111000     01         


Q ss_pred             HHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCC
Q 031001          115 LLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDS  154 (167)
Q Consensus       115 ~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~  154 (167)
                        .+..|  ...-.+++-....++|+||+++||||+|.+.
T Consensus       155 --~rliG--~~~A~~llltG~~~~A~eA~~~GLvd~vv~~  190 (714)
T TIGR02437       155 --PRVIG--ADNALEWIASGKENRAEDALKVGAVDAVVTA  190 (714)
T ss_pred             --HHHhC--HHHHHHHHHcCCcCCHHHHHHCCCCcEeeCh
Confidence              11112  1222444556777999999999999999864

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=97.53  E-value=0.00071  Score=58.92  Aligned_cols=95  Identities=19%  Similarity=0.092  Sum_probs=64.2

Q ss_pred             HHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHHHH
Q 031001           39 ADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAK  118 (167)
Q Consensus        39 ~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a~  118 (167)
                      ...|..++.||.+.+.|.|.+.|.-++++|  +-|++.++++|.+=...+    |-..+..... .|.+.          
T Consensus        98 ~~~i~~~~kPvIAaV~G~a~GgG~~Lalac--D~ria~~~a~f~~pe~~i----Gl~p~~g~~~-~L~rl----------  160 (379)
T PLN02874         98 CYHIHTYKKTQVALVHGLVMGGGAGLMVPM--KFRVVTEKTVFATPEASV----GFHTDCGFSY-ILSRL----------  160 (379)
T ss_pred             HHHHHhCCCCEEEEecCeEEecHHHHHHhC--CeEEEeCCeEEecccccc----CcCCChhHHH-HHHhh----------
Confidence            345778899999999999999999999999  579999999876633322    3222221100 11111          


Q ss_pred             HhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCC
Q 031001          119 GTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDS  154 (167)
Q Consensus       119 ~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~  154 (167)
                       .|.   .-..++-....++++||+++||||+|+++
T Consensus       161 -~g~---~a~~l~ltG~~i~a~eA~~~GLv~~vv~~  192 (379)
T PLN02874        161 -PGH---LGEYLALTGARLNGKEMVACGLATHFVPS  192 (379)
T ss_pred             -hHH---HHHHHHHcCCcccHHHHHHcCCccEEeCH
Confidence             010   01123445667999999999999999875

>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase

Probab=97.47  E-value=0.00087  Score=61.06  Aligned_cols=101  Identities=17%  Similarity=0.101  Sum_probs=63.6

Q ss_pred             HHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecC--CceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHH
Q 031001           38 IADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPN--SSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIEL  115 (167)
Q Consensus        38 I~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~--s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~  115 (167)
                      +...|+.++.||.+.+.|.|.+.|.-+.++|  +-|++.++  ++|.+  |... ..|-.....- ...+          
T Consensus       111 i~~~i~~~pkPvIAAVnG~a~GGG~~LALac--D~rvAs~~a~a~f~~--pEv~-~lGl~P~~gg-~~~l----------  174 (546)
T TIGR03222       111 IEDSSRHSGLKFLAAVNGTCAGGGYELALAC--DEIMLVDDRSSSVSL--PEVP-LLGVLPGTGG-LTRV----------  174 (546)
T ss_pred             HHHHHHhCCCCEEEEECCEeehHHHHHHHhC--CEEEEecCCCcEEEc--cchh-ccCcCCccch-hhhc----------
Confidence            5566778999999999999999999999999  57999986  44444  5421 1222211110 0001          


Q ss_pred             HHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001          116 LAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ  155 (167)
Q Consensus       116 ~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~  155 (167)
                       ............+++-...-++++||+++||||+|.++.
T Consensus       175 -~~~~~vg~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~  213 (546)
T TIGR03222       175 -TDKRRVRRDHADIFCTIEEGVRGKRAKEWRLVDEVVKPS  213 (546)
T ss_pred             -cccchhCHHHHHHHHHcCCCccHHHHHHcCCceEEeChH
Confidence             000001122223334456679999999999999998753

In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.

>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=97.42  E-value=0.0011  Score=58.27  Aligned_cols=96  Identities=15%  Similarity=0.059  Sum_probs=65.1

Q ss_pred             HHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHHHH
Q 031001           39 ADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAK  118 (167)
Q Consensus        39 ~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a~  118 (167)
                      ...|..++.||.+.+.|.|.+.|.-|.++|  +-|++.++++|.+=...+    |-..++.-. -.|.+.          
T Consensus       126 ~~~i~~~pkPvIA~v~G~a~GGG~~Lal~c--D~rvate~a~fa~PE~~i----Gl~Pd~G~s-~~L~rl----------  188 (401)
T PLN02157        126 IYLLGTYLKPHVAILNGVTMGGGTGVSIPG--TFRVATDRTIFATPETII----GFHPDAGAS-FNLSHL----------  188 (401)
T ss_pred             HHHHHhCCCCEEEEEeCeEeehhHHHHHhC--CEEEEeCCCEEEChhhhc----CCCCCccHH-HHHHHh----------
Confidence            345788899999999999999999999999  479999999876633322    322222110 011111          


Q ss_pred             HhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001          119 GTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ  155 (167)
Q Consensus       119 ~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~  155 (167)
                       .|.   .-..++-....|+++||+++||+|+++++.
T Consensus       189 -~G~---~a~~L~LTG~~i~A~eA~~~GLv~~vVp~~  221 (401)
T PLN02157        189 -PGR---LGEYLGLTGLKLSGAEMLACGLATHYIRSE  221 (401)
T ss_pred             -hhH---HHHHHHHcCCcCCHHHHHHcCCceEEeCHh
Confidence             110   112333456789999999999999999764

>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase

Probab=97.41  E-value=0.00088  Score=61.03  Aligned_cols=98  Identities=16%  Similarity=0.146  Sum_probs=67.5

Q ss_pred             HHHHHhhcCCCeEEEE-ccccccHH-HHHHhcCCCCceee-------ecCCceeeecccccCCc--CChhHHHHHHHHHH
Q 031001           38 IADAMAYCKSKVYTVN-CGMAYGQA-AMLLSVGAKGYRGL-------QPNSSTKLYLPVVGRSS--GPVTDMWRKAKDLE  106 (167)
Q Consensus        38 I~~~i~~~~~~V~t~~-~G~aaS~a-~~i~~ag~~~~R~~-------~p~s~~miH~p~~~~~~--G~~~dl~~~~~~l~  106 (167)
                      ++..|..++.||.+.+ .|.|.+.| .=++++|  +-|++       .|+++|.+-...++-.-  |-..-         
T Consensus       357 ~~~~l~~~~kpviAav~~G~a~GgG~~eLalac--D~~ia~~~~~~~~~~a~f~~~e~~lGl~p~~gg~~~---------  425 (546)
T TIGR03222       357 TLARLDVSSRSLFALIEPGSCFAGTLAELAFAA--DRSYMLAFPDNNDPEPAITLSELNFGLYPMVNGLSR---------  425 (546)
T ss_pred             HHHHHHcCCCCEEEEECCCeEeHHHHHHHHHhC--ceeeecCCCCCCCCCCEEeCCccccccCCCcCcHHH---------
Confidence            6778899999999999 89999999 9999998  57999       89998877444432211  11111         


Q ss_pred             HHHHHHHHHHHHHh-CCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001          107 ANAESYIELLAKGT-GKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ  155 (167)
Q Consensus       107 ~~~~~~~~~~a~~t-g~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~  155 (167)
                               +.++. |.+...-.+++-....++++||+++||+++|.++.
T Consensus       426 ---------L~~~v~G~~~a~~~~~~ltg~~i~A~eA~~~Glv~~vv~~~  466 (546)
T TIGR03222       426 ---------LATRFYAEPAPVAAVRDKIGQALDAEEAERLGLVTAAPDDI  466 (546)
T ss_pred             ---------HHHHhcCchhHHHHHHHHhCCCCCHHHHHHcCCcccccCch
Confidence                     12222 33222222233456779999999999999997653

In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.

>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain

Probab=97.37  E-value=0.00047  Score=63.07  Aligned_cols=138  Identities=14%  Similarity=0.124  Sum_probs=83.4

Q ss_pred             CCCeEEEEcCCCCCCC-CCCCCCCHHHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhcC--CCCceeeecCCceeeec
Q 031001            9 SKPIYLYINSSGTQNE-KKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVG--AKGYRGLQPNSSTKLYL   85 (167)
Q Consensus         9 ~~~I~l~INS~G~~~~-~~~~~G~v~~g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag--~~~~R~~~p~s~~miH~   85 (167)
                      .-|+...+|+||...+ ..|--|.+..+-.++.++.....|+.|+++|.+++.|.+.+++.  ..+..++.|++.+.+-.
T Consensus       401 ~iPlv~l~D~pGf~~G~~~E~~G~~~~~a~l~~A~a~~~VP~isvi~g~a~G~g~~aM~g~~~~~d~~~awp~A~i~vmg  480 (569)
T PLN02820        401 GIPLLFLQNITGFMVGSRSEASGIAKAGAKMVMAVACAKVPKITIIVGGSFGAGNYGMCGRAYSPNFLFMWPNARIGVMG  480 (569)
T ss_pred             CCCEEEEEECCCCCCCHHHHHhhHHHHHHHHHHHHHhCCCCEEEEEECCcchHHHHHhcCcCCCCCEEEECCCCeEEecC
Confidence            4689999999996532 33444778888889999999999999999999999998877643  22456667777666544


Q ss_pred             ccccCCcCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001           86 PVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ  155 (167)
Q Consensus        86 p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~  155 (167)
                      |. +     +..+- +..++.+..+...+.-.+....-.+++.+..  +...+|-.|-+.|+||.||++.
T Consensus       481 ~e-~-----aa~il-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~p~~aa~~~~vD~VIdP~  541 (569)
T PLN02820        481 GA-Q-----AAGVL-AQIERENKKRQGIQWSKEEEEAFKAKTVEAY--EREANPYYSTARLWDDGVIDPA  541 (569)
T ss_pred             HH-H-----HHHHH-HHHHhhhhhhccccCCccHHHHHHHHHHHHH--HHhCCHHHHHHcCCcCcccCHH
Confidence            43 1     11211 1223322111110000000000011222222  2366889999999999999875

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=97.33  E-value=0.0035  Score=58.98  Aligned_cols=99  Identities=18%  Similarity=0.190  Sum_probs=67.7

Q ss_pred             HHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCC--ceeeecccccCCcCChhHHHHHHHHHHHHHHHHH
Q 031001           36 YAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNS--STKLYLPVVGRSSGPVTDMWRKAKDLEANAESYI  113 (167)
Q Consensus        36 ~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s--~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~  113 (167)
                      ..++..|..++.||.+.+.|.|.+.|.-++++|  +.|++.+++  +|.+....++..-|-..-     ..         
T Consensus        98 ~~l~~~i~~~~kPvIAav~G~a~GgG~eLALac--D~ria~~~a~a~fglpEv~lGl~Pg~Ggt-----~r---------  161 (737)
T TIGR02441        98 QEMFERIEKSQKPIVAAISGSCLGGGLELALAC--HYRIATKDRKTLLGLPEVMLGLLPGAGGT-----QR---------  161 (737)
T ss_pred             HHHHHHHHhCCCCEEEEECCEeecHHHHHHHhC--CEEEEcCCCCCeEecchhhhCCCCCccHh-----hh---------
Confidence            457888999999999999999999999999999  589999985  444432222211111000     00         


Q ss_pred             HHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCC
Q 031001          114 ELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDS  154 (167)
Q Consensus       114 ~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~  154 (167)
                        +.+..|  ...-.+++-....++++||+++||||+|.++
T Consensus       162 --LprliG--~~~A~~l~ltG~~i~a~eA~~~GLVd~vv~~  198 (737)
T TIGR02441       162 --LPKLTG--VPAALDMMLTGKKIRADRAKKMGIVDQLVDP  198 (737)
T ss_pred             --HHHhhC--HHHHHHHHHcCCcCCHHHHHHCCCCeEecCC
Confidence              111112  1222345556788999999999999999986

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>KOG1681 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]

Probab=97.30  E-value=0.00019  Score=58.78  Aligned_cols=109  Identities=16%  Similarity=0.153  Sum_probs=80.7

Q ss_pred             HHHHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHH
Q 031001           34 DAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYI  113 (167)
Q Consensus        34 ~g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~  113 (167)
                      ....-|..|..++.||.+-+-|-|-++|.=+..+|+  -||+...+.|.+...-+    |-+.|+.    .|+++-+.+ 
T Consensus       114 ~~Q~~~t~ie~CpKPVIaavHg~CiGagvDLiTAcD--IRycsqDAffsvkEVDv----glaADvG----TL~RlpkvV-  182 (292)
T KOG1681|consen  114 RYQDTFTAIERCPKPVIAAVHGACIGAGVDLITACD--IRYCSQDAFFSVKEVDV----GLAADVG----TLNRLPKVV-  182 (292)
T ss_pred             HHHHHHHHHHhCChhHHHHHHhhhccccccceeecc--eeeecccceeeeeeeee----ehhhchh----hHhhhhHHh-
Confidence            345567888899999999999999999999988885  69999999998876543    5555653    333332211 


Q ss_pred             HHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCchHHHhh
Q 031001          114 ELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDAAYEK  161 (167)
Q Consensus       114 ~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~~~~~~~  161 (167)
                             | +.....++....+-|+|.||++.||+.+|.++.+++++.
T Consensus       183 -------G-n~s~~~elafTar~f~a~EAl~~GLvSrvf~dk~~ll~~  222 (292)
T KOG1681|consen  183 -------G-NQSLARELAFTARKFSADEALDSGLVSRVFPDKEELLNG  222 (292)
T ss_pred             -------c-chHHHHHHHhhhhhcchhhhhhcCcchhhcCCHHHHHhh
Confidence                   1 223334445556789999999999999999999887764

>PLN02988 3-hydroxyisobutyryl-CoA hydrolase

Probab=97.27  E-value=0.0033  Score=54.92  Aligned_cols=96  Identities=18%  Similarity=0.151  Sum_probs=64.1

Q ss_pred             HHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHHHH
Q 031001           39 ADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAK  118 (167)
Q Consensus        39 ~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a~  118 (167)
                      ...|..++.||.+.+.|.|.+.|.-|.++|  +-|++.++++|.+  |..  ..|-..++.- .-.|.++-... .    
T Consensus        98 ~~~i~~~pKPvIa~v~G~a~GGG~~Lal~~--D~rvate~a~f~m--PE~--~iGl~Pd~G~-s~~L~rl~G~~-~----  165 (381)
T PLN02988         98 NYVMATYSKAQVSILNGIVMGGGAGVSVHG--RFRIATENTVFAM--PET--ALGLFPDVGA-SYFLSRLPGFF-G----  165 (381)
T ss_pred             HHHHHHCCCCEEEEecCeEeehhhHHhhcC--CeEEEcCCcEEeC--hhh--hcCcCCCccH-HHHHHHHHHHH-H----
Confidence            346778999999999999999999999999  5799999997765  431  1232222211 01121111110 1    


Q ss_pred             HhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001          119 GTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ  155 (167)
Q Consensus       119 ~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~  155 (167)
                               ..++-....++++||++.||+|+++++.
T Consensus       166 ---------~~l~LTG~~i~a~eA~~~GLv~~vv~~~  193 (381)
T PLN02988        166 ---------EYVGLTGARLDGAEMLACGLATHFVPST  193 (381)
T ss_pred             ---------HHHHHcCCCCCHHHHHHcCCceEecCHh
Confidence                     1234446689999999999999998753

>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit

Probab=97.22  E-value=0.00088  Score=60.59  Aligned_cols=130  Identities=18%  Similarity=0.237  Sum_probs=80.4

Q ss_pred             CCCeEEEEcCCCCCCC-CCCCCCCHHHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhcC--CCCceeeecCCceeeec
Q 031001            9 SKPIYLYINSSGTQNE-KKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVG--AKGYRGLQPNSSTKLYL   85 (167)
Q Consensus         9 ~~~I~l~INS~G~~~~-~~~~~G~v~~g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag--~~~~R~~~p~s~~miH~   85 (167)
                      .-||...+||||...+ ..|--|.+..+-.++.++.....|..+++.|.++|.|.+.+++.  ..+..++.|++.+.+-.
T Consensus       350 ~lPlV~lvDs~G~~~g~~~E~~g~~~~~a~~~~a~~~~~vP~isvi~g~~~Gga~~am~~~~~~~d~~~a~p~a~~~v~~  429 (512)
T TIGR01117       350 NIPIVTFVDVPGFLPGVNQEYGGIIRHGAKVLYAYSEATVPKVTIITRKAYGGAYLAMCSKHLGADQVYAWPTAEIAVMG  429 (512)
T ss_pred             CCCEEEEEeCcCccccHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCchHHHHHhccccCCCCEEEEcCCCeEeecC
Confidence            5699999999994211 22222466777788888888889999999999999877665431  13567888998887766


Q ss_pred             ccccCCcCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001           86 PVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ  155 (167)
Q Consensus        86 p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~  155 (167)
                      |. +     +..+. +.+++.+..+. .+.       -.+++.+..  +.+.+|..+.+.|+||.|+++.
T Consensus       430 pe-~-----a~~i~-~~~~l~~~~~~-~~~-------~~~~~~~~~--~~~~~~~~~a~~g~vD~VI~P~  482 (512)
T TIGR01117       430 PA-G-----AANII-FRKDIKEAKDP-AAT-------RKQKIAEYR--EEFANPYKAAARGYVDDVIEPK  482 (512)
T ss_pred             HH-H-----HHHHH-hhhhcccccCH-HHH-------HHHHHHHHH--HhhcCHHHHHhcCCCCeeEChH
Confidence            65 2     11111 11222111100 000       001111111  2366889999999999999875

This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.

>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]

Probab=97.14  E-value=0.0017  Score=54.64  Aligned_cols=114  Identities=25%  Similarity=0.286  Sum_probs=74.0

Q ss_pred             CCCeEEEEcCCCCCCC-CCCCCCCHHHHHHHHH---HHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeee
Q 031001            9 SKPIYLYINSSGTQNE-KKESVGAETDAYAIAD---AMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLY   84 (167)
Q Consensus         9 ~~~I~l~INS~G~~~~-~~~~~G~v~~g~aI~~---~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH   84 (167)
                      .-||..+|++||---+ ..|--|.   +-+|.-   .|-.++.|+.+++.|-..|.|++-+..|  ++.+++.||++.+=
T Consensus       150 ~lPiitfIDT~GAypG~~AEErGQ---~eAIA~nL~em~~LkvPiI~iVIGEGgSGGALAi~va--d~V~mle~s~ySVi  224 (317)
T COG0825         150 GLPIITFIDTPGAYPGIGAEERGQ---SEAIARNLREMARLKVPIISIVIGEGGSGGALAIGVA--DRVLMLENSTYSVI  224 (317)
T ss_pred             CCCEEEEecCCCCCCCcchhhccc---HHHHHHHHHHHhCCCCCEEEEEecCCCchhhHHhhHH--HHHHHHHhceeeec
Confidence            4699999999992211 1222233   334443   3446678999999999999999988888  46788999999887


Q ss_pred             cccccCCcCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001           85 LPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ  155 (167)
Q Consensus        85 ~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~  155 (167)
                      .|. +    -++=+   +++-.+..+     -++           .|    -++|+.-+++||||.|+...
T Consensus       225 sPE-G----~AsIL---WkD~~ka~e-----AAe-----------~m----kita~dLk~lgiID~II~Ep  267 (317)
T COG0825         225 SPE-G----CASIL---WKDASKAKE-----AAE-----------AM----KITAHDLKELGIIDGIIPEP  267 (317)
T ss_pred             Chh-h----hhhhh---hcChhhhHH-----HHH-----------Hc----CCCHHHHHhCCCcceeccCC
Confidence            775 2    22222   111111111     111           11    26788889999999999753

>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=97.10  E-value=0.0057  Score=53.92  Aligned_cols=96  Identities=14%  Similarity=-0.015  Sum_probs=64.4

Q ss_pred             HHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHHHH
Q 031001           39 ADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAK  118 (167)
Q Consensus        39 ~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a~  118 (167)
                      ...|..++.|+.+.+.|.|.+.|.-|.++|  +-|++.++++|.+=...+    |-..++.-.. .|.++-... .    
T Consensus       131 ~~~i~~~pKPvIA~v~G~amGGG~gLal~~--D~rVate~a~famPE~~i----Gl~PdvG~s~-~L~rl~g~~-g----  198 (407)
T PLN02851        131 VYLQGTYLKPNVAIMDGITMGCGAGISIPG--MFRVVTDKTVFAHPEVQM----GFHPDAGASY-YLSRLPGYL-G----  198 (407)
T ss_pred             HHHHHhCCCCEEEEEcCEEeeHHHHHHHhC--CEEEEeCCceEecchhcc----CCCCCccHHH-HHHHhcCHH-H----
Confidence            345667889999999999999999999998  479999999877633332    2222321100 122211111 1    


Q ss_pred             HhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001          119 GTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ  155 (167)
Q Consensus       119 ~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~  155 (167)
                               ..++-.+..++++||+++||+|+++++.
T Consensus       199 ---------~~L~LTG~~i~a~eA~~~GLa~~~v~~~  226 (407)
T PLN02851        199 ---------EYLALTGQKLNGVEMIACGLATHYCLNA  226 (407)
T ss_pred             ---------HHHHHhCCcCCHHHHHHCCCceeecCHh
Confidence                     1233456789999999999999999765

>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional

Probab=97.01  E-value=0.0031  Score=57.51  Aligned_cols=98  Identities=15%  Similarity=0.161  Sum_probs=64.1

Q ss_pred             HHHHHhhcCCCeEEEEc-cccccHH-HHHHhcCCCCceeee-------cCCceeeecccccCCc--CChhHHHHHHHHHH
Q 031001           38 IADAMAYCKSKVYTVNC-GMAYGQA-AMLLSVGAKGYRGLQ-------PNSSTKLYLPVVGRSS--GPVTDMWRKAKDLE  106 (167)
Q Consensus        38 I~~~i~~~~~~V~t~~~-G~aaS~a-~~i~~ag~~~~R~~~-------p~s~~miH~p~~~~~~--G~~~dl~~~~~~l~  106 (167)
                      ++..|..++.||.+.+. |.|.+.| .-++++|  +-|++.       |+++|.+-...++-.-  |-..-+        
T Consensus       361 ~~~~l~~~~kPvIAaV~~G~a~GgG~~eLalac--D~~ia~~~~~~~~~~a~f~~pe~~~Gl~p~~gg~~~L--------  430 (550)
T PRK08184        361 TLKRLDVTSRSLFALIEPGSCFAGTLAELALAA--DRSYMLALPDDNDPAPAITLSALNFGLYPMVNGLSRL--------  430 (550)
T ss_pred             HHHHHHhCCCCEEEEECCCceehhHHHHHHHHC--ChhhhcCCCCCCCCCCEEECccccccCCCCCCcHHHh--------
Confidence            56678888999999996 9999999 8898988  479999       9998877444332211  111111        


Q ss_pred             HHHHHHHHHHHHH-hCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001          107 ANAESYIELLAKG-TGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ  155 (167)
Q Consensus       107 ~~~~~~~~~~a~~-tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~  155 (167)
                                .++ -|.....-..++-....++++||+++|||++|.++.
T Consensus       431 ----------~r~~vG~~~A~~~~l~~tg~~i~A~eA~~~GLv~~vv~~~  470 (550)
T PRK08184        431 ----------ARRFYGEPDPLAAVRAKIGQPLDADAAEELGLVTAAPDDI  470 (550)
T ss_pred             ----------HHHhcChHHHHHHHHHHhCCcCCHHHHHHcCCcccccChH
Confidence                      111 111111000011246689999999999999998754

>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]

Probab=96.75  E-value=0.0043  Score=55.78  Aligned_cols=131  Identities=21%  Similarity=0.240  Sum_probs=77.0

Q ss_pred             CCCeEEEEcCCCCCCC-CCCCCCCHHHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhcCC--CCceeeecCCceeeec
Q 031001            9 SKPIYLYINSSGTQNE-KKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGA--KGYRGLQPNSSTKLYL   85 (167)
Q Consensus         9 ~~~I~l~INS~G~~~~-~~~~~G~v~~g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~--~~~R~~~p~s~~miH~   85 (167)
                      +-||....|+||--.+ ..|--|.+..+-.+.+++...+.|+.|++.|.+.|.|.+.+.+..  .+..++.|++.+.+..
T Consensus       329 ~iPlv~l~dtpGf~~g~~~E~~g~~~~ga~~~~a~~~~~vP~itvi~~~~~Gga~~am~~~~~~~~~~~Awp~a~~~vm~  408 (493)
T PF01039_consen  329 NIPLVTLVDTPGFMPGPEAERAGIIRAGARLLYALAEATVPKITVIVRKAYGGAYYAMCGRGYGPDFVFAWPTAEIGVMG  408 (493)
T ss_dssp             T--EEEEEEECEB--SHHHHHTTHHHHHHHHHHHHHHH-S-EEEEEEEEEEHHHHHHTTGGGGTTSEEEEETT-EEESS-
T ss_pred             CCceEEEeecccccccchhhhcchHHHHHHHHHHHHcCCCCEEEEEeCCccCcchhhhcccccchhhhhhhhcceeeecC
Confidence            4599999999995533 344447788899999999999999999999999998876655541  2356777888777655


Q ss_pred             ccccCCcCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH-HHhhhC--CCccccHHHHHHcCcceEEeCCc
Q 031001           86 PVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEE-IAKDIQ--RPKYMQAKEAIVYGLADKIIDSQ  155 (167)
Q Consensus        86 p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a~~tg~~~~~-i~~~~~--~~~~lsa~EA~e~GliD~I~~~~  155 (167)
                      |. +     +..+ .+.+++.+....         +.++++ ..+.++  .+...++..|.+.|++|.|+++.
T Consensus       409 ~e-~-----a~~i-~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~D~ii~p~  465 (493)
T PF01039_consen  409 PE-G-----AASI-LYRDELEAAEAE---------GADPEAQRAEKIAEYEDELSSPYRAASRGYVDDIIDPA  465 (493)
T ss_dssp             HH-H-----HHHH-HTHHHHHHSCHC---------CHSHHHHHHHHHHHHHHHHSSHHHHHHTTSSSEESSGG
T ss_pred             hh-h-----hhee-eehhhhhhhhcc---------cchhHHHHHHHHHHHHHhcCCHHHHHhcCCCCCccCHH
Confidence            54 2     1121 011122111100         000000 111111  12346789999999999999874

The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....

>PRK05654 acetyl-CoA carboxylase subunit beta; Validated

Probab=95.67  E-value=0.13  Score=43.60  Aligned_cols=68  Identities=12%  Similarity=0.122  Sum_probs=46.5

Q ss_pred             CCCeEEEEcCCCCCCCCCCCCCCHHHHHH-------HHHH---HhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecC
Q 031001            9 SKPIYLYINSSGTQNEKKESVGAETDAYA-------IADA---MAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPN   78 (167)
Q Consensus         9 ~~~I~l~INS~G~~~~~~~~~G~v~~g~a-------I~~~---i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~   78 (167)
                      .-|+.....|+|         ....+|..       +..+   +.....|..+++.|-+++.++..++... +-.++.|+
T Consensus       156 ~lPlV~l~dsgG---------armqEgi~sL~~~ak~~~a~~~~~~a~vP~IsVv~gpt~GG~aas~a~~~-D~iia~p~  225 (292)
T PRK05654        156 KCPLVIFSASGG---------ARMQEGLLSLMQMAKTSAALKRLSEAGLPYISVLTDPTTGGVSASFAMLG-DIIIAEPK  225 (292)
T ss_pred             CCCEEEEEcCCC---------cchhhhhhHHHhHHHHHHHHHHHHcCCCCEEEEEeCCCchHHHHHHHHcC-CEEEEecC
Confidence            468899999999         55555542       2222   3344589999999999988777665522 46788888


Q ss_pred             Cceeeecc
Q 031001           79 SSTKLYLP   86 (167)
Q Consensus        79 s~~miH~p   86 (167)
                      +.+.+--|
T Consensus       226 A~ig~aGp  233 (292)
T PRK05654        226 ALIGFAGP  233 (292)
T ss_pred             cEEEecCH
Confidence            87766444

>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit

Probab=95.42  E-value=0.14  Score=43.25  Aligned_cols=101  Identities=13%  Similarity=0.187  Sum_probs=65.8

Q ss_pred             CCCeEEEEcCCCCCCCCCCCCCCHHHHHHH-------H---HHHhhcCCCeEEEEccccccHHHHHHh-cCCCCceeeec
Q 031001            9 SKPIYLYINSSGTQNEKKESVGAETDAYAI-------A---DAMAYCKSKVYTVNCGMAYGQAAMLLS-VGAKGYRGLQP   77 (167)
Q Consensus         9 ~~~I~l~INS~G~~~~~~~~~G~v~~g~aI-------~---~~i~~~~~~V~t~~~G~aaS~a~~i~~-ag~~~~R~~~p   77 (167)
                      .-|+....+|+|         ..+.++...       .   ..+.....|..+++.|-+++.++..++ .+  +-.++.|
T Consensus       155 ~lPlV~l~dSgG---------aRmqEg~~sL~~~ak~~~~~~~~~~~~vP~IsVv~gpt~GG~aas~a~~~--D~iia~p  223 (285)
T TIGR00515       155 NCPLIIFSASGG---------ARMQEALLSLMQMAKTSAALAKMSERGLPYISVLTDPTTGGVSASFAMLG--DLNIAEP  223 (285)
T ss_pred             CCCEEEEEcCCC---------cccccchhHHHhHHHHHHHHHHHHcCCCCEEEEEeCCcchHHHHHHHhCC--CEEEEEC
Confidence            459999999999         454444322       2   223334589999999999988777664 55  4678888


Q ss_pred             CCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001           78 NSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ  155 (167)
Q Consensus        78 ~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~  155 (167)
                      ++.+.+--|.          +                 +...++       +.+. +-+-+|+-+.+.|+||.|++..
T Consensus       224 ~A~ig~aGpr----------V-----------------ie~ti~-------e~lp-e~~q~ae~~~~~G~vD~iv~~~  266 (285)
T TIGR00515       224 KALIGFAGPR----------V-----------------IEQTVR-------EKLP-EGFQTSEFLLEHGAIDMIVHRP  266 (285)
T ss_pred             CeEEEcCCHH----------H-----------------HHHHhc-------Cccc-hhcCCHHHHHhCCCCcEEECcH
Confidence            9877664332          1                 111222       1122 3356778788999999998764

The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.

>PF06833 MdcE: Malonate decarboxylase gamma subunit (MdcE); InterPro: IPR009648 This family consists of several bacterial malonate decarboxylase gamma subunit proteins

Probab=95.23  E-value=0.15  Score=41.81  Aligned_cols=70  Identities=14%  Similarity=0.107  Sum_probs=47.4

Q ss_pred             CCCCCCeEEEEcCCCCCCCCCCCCCCHHHHHHH----------HHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceee
Q 031001            6 DNASKPIYLYINSSGTQNEKKESVGAETDAYAI----------ADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGL   75 (167)
Q Consensus         6 ~~~~~~I~l~INS~G~~~~~~~~~G~v~~g~aI----------~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~   75 (167)
                      +.+..||.+.+++|| |..     |.-++.+-|          |+.-|....||.+.+.|.|.|.|.+- .+--.++-++
T Consensus        61 ~~~krpIv~lVD~~s-Qa~-----grreEllGi~~alAhla~a~a~AR~~GHpvI~Lv~G~A~SGaFLA-~GlqA~rl~A  133 (234)
T PF06833_consen   61 SGPKRPIVALVDVPS-QAY-----GRREELLGINQALAHLAKAYALARLAGHPVIGLVYGKAMSGAFLA-HGLQANRLIA  133 (234)
T ss_pred             cCCCCCEEEEEeCCc-ccc-----chHHHHhhHHHHHHHHHHHHHHHHHcCCCeEEEEecccccHHHHH-HHHHhcchhc
Confidence            456789999999999 432     444444444          44556667899999999999977543 3322245577


Q ss_pred             ecCCceeee
Q 031001           76 QPNSSTKLY   84 (167)
Q Consensus        76 ~p~s~~miH   84 (167)
                      +|.+  |+|
T Consensus       134 L~ga--~i~  140 (234)
T PF06833_consen  134 LPGA--MIH  140 (234)
T ss_pred             CCCC--eee
Confidence            7844  666

Malonate decarboxylase of Klebsiella pneumoniae consists of four different subunits and catalyses the conversion of malonate plus H+ to acetate and CO2. The catalysis proceeds via acetyl and malonyl thioester residues with the phosphribosyl-dephospho-CoA prosthetic group of the acyl carrier protein (ACP) subunit. MdcD and E together probably function as malonyl-S-ACP decarboxylase []. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.

>KOG1682 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]

Probab=94.73  E-value=0.039  Score=44.76  Aligned_cols=98  Identities=17%  Similarity=0.155  Sum_probs=66.1

Q ss_pred             HHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHH
Q 031001           37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELL  116 (167)
Q Consensus        37 aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~  116 (167)
                      -+.+.||.++.||.+-+.|.|+-+|+-+.++|+  --++.++|.|..--.-++-+-.+ ..+.     |.+.--+=+.+|
T Consensus       116 dvmn~Irn~pVPVia~VNG~AaAAGcQLVaSCD--~vVa~k~SkF~tPG~~vGlFCST-PGvA-----laRavpRkva~~  187 (287)
T KOG1682|consen  116 DVMNDIRNLPVPVIAKVNGYAAAAGCQLVASCD--MVVATKNSKFSTPGAGVGLFCST-PGVA-----LARAVPRKVAAY  187 (287)
T ss_pred             HHHHHHhcCCCceEEEecchhhhccceEEEeee--EEEEecCccccCCCCceeeEecC-cchh-----HhhhcchhHHHH
Confidence            467889999999999999999999999888885  45777888775521111111111 1221     222222334556


Q ss_pred             HHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001          117 AKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ  155 (167)
Q Consensus       117 a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~  155 (167)
                      .-.||.|             .+++||+--|++.+|++..
T Consensus       188 ML~Tg~P-------------i~~eeAl~sGlvskvVp~~  213 (287)
T KOG1682|consen  188 MLMTGLP-------------ITGEEALISGLVSKVVPAE  213 (287)
T ss_pred             HHHhCCC-------------CchHHHHHhhhhhhcCCHH
Confidence            6667766             4789999999999998764

>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]

Probab=94.24  E-value=0.092  Score=47.72  Aligned_cols=60  Identities=20%  Similarity=0.205  Sum_probs=51.1

Q ss_pred             CCCeEEEEcCCCCCCC-CCCCCCCHHHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhcC
Q 031001            9 SKPIYLYINSSGTQNE-KKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVG   68 (167)
Q Consensus         9 ~~~I~l~INS~G~~~~-~~~~~G~v~~g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag   68 (167)
                      +-||....|.||...+ +-|-.|-+--|-.|+.++-....|..|++.|.+.++|.+.+.+.
T Consensus       359 ~iPlv~L~d~pGFm~G~~~E~~giik~Gakl~~A~aeatVPkitvI~rkayGga~~~M~~~  419 (526)
T COG4799         359 NIPLVFLVDTPGFMPGTDQEYGGIIKHGAKLLYAVAEATVPKITVITRKAYGGAYYVMGGK  419 (526)
T ss_pred             CCCeEEEeCCCCCCCChhHHhChHHHhhhHHHhhHhhccCCeEEEEecccccceeeeecCc
Confidence            3589999999997744 66666888999999999999999999999999999888765543

>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]

Probab=93.57  E-value=0.1  Score=42.78  Aligned_cols=97  Identities=18%  Similarity=0.159  Sum_probs=66.8

Q ss_pred             HHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCC--hhHHHHHHHHHHHHHHHHH
Q 031001           36 YAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGP--VTDMWRKAKDLEANAESYI  113 (167)
Q Consensus        36 ~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~--~~dl~~~~~~l~~~~~~~~  113 (167)
                      +.+--.||.++.||.+.|.|.|.+.|-.+-+.|+-  -.+..|+.|----|.++.+.|-  +..+.       +      
T Consensus       106 LdlQrlIR~~PKpViA~V~G~AiGGGhvlhvvCDL--TiAa~nA~FgQTgp~VGSFD~G~Gs~yla-------r------  170 (282)
T COG0447         106 LDLQRLIRTMPKPVIAMVAGYAIGGGHVLHVVCDL--TIAADNAIFGQTGPKVGSFDGGYGSSYLA-------R------  170 (282)
T ss_pred             hhHHHHHHhCCcceEEEEeeEeccCccEEEEEeee--eeehhcchhcCCCCCcccccCcccHHHHH-------H------
Confidence            44455789999999999999999999999888864  4778899888888887655432  12221       1      


Q ss_pred             HHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCC
Q 031001          114 ELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDS  154 (167)
Q Consensus       114 ~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~  154 (167)
                       +    -|.  ++-++.+-=-+..+|+||++.|++..|++.
T Consensus       171 -~----VGq--KkArEIwfLcR~Y~A~eal~MGlVN~Vvp~  204 (282)
T COG0447         171 -I----VGQ--KKAREIWFLCRQYDAEEALDMGLVNTVVPH  204 (282)
T ss_pred             -H----hhh--hhhHHhhhhhhhccHHHHHhcCceeeeccH
Confidence             1    111  111122222345799999999999999764

>TIGR03133 malonate_beta malonate decarboxylase, beta subunit

Probab=92.67  E-value=0.47  Score=39.86  Aligned_cols=68  Identities=19%  Similarity=0.238  Sum_probs=49.9

Q ss_pred             CCeEEEEcCCCCCCCCCCCCCCHHHHH-------HHHHHHhhcC--CCeEEEEccc--cccHHHHHHhcCCCCceeeecC
Q 031001           10 KPIYLYINSSGTQNEKKESVGAETDAY-------AIADAMAYCK--SKVYTVNCGM--AYGQAAMLLSVGAKGYRGLQPN   78 (167)
Q Consensus        10 ~~I~l~INS~G~~~~~~~~~G~v~~g~-------aI~~~i~~~~--~~V~t~~~G~--aaS~a~~i~~ag~~~~R~~~p~   78 (167)
                      -|+.+.+.|.|         +.+.++.       .++..+...+  .|+.+++.|-  |++.++++.+.+  +..++.|.
T Consensus       100 ~PvV~l~dSgG---------aRlqEg~~~L~~~a~i~~~~~~ls~~vP~Isvv~Gp~gc~GG~a~~a~l~--D~vim~~~  168 (274)
T TIGR03133       100 TAVVLLLDTGG---------VRLQEANAGLIAIAEIMRAILDARAAVPVIGVIGGRVGCFGGMGIAAGLC--SYLIMTEE  168 (274)
T ss_pred             CCEEEEEcCCC---------cChhhhHHHHHHHHHHHHHHHHHhCCCCEEEEEeCCCCcchHHHHHHhcC--CEEEEeCC
Confidence            48999999999         6665543       2333333333  7999999999  788888777777  57889999


Q ss_pred             Cceeeecccc
Q 031001           79 SSTKLYLPVV   88 (167)
Q Consensus        79 s~~miH~p~~   88 (167)
                      +++.+--|.+
T Consensus       169 a~i~~aGP~V  178 (274)
T TIGR03133       169 GRLGLSGPEV  178 (274)
T ss_pred             cEEeccCHHH
Confidence            9888776653

Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.

>PRK07189 malonate decarboxylase subunit beta; Reviewed

Probab=92.17  E-value=0.46  Score=40.42  Aligned_cols=67  Identities=16%  Similarity=0.202  Sum_probs=49.5

Q ss_pred             CCeEEEEcCCCCCCCCCCCCCCHHHHH-------HHHHHHhhcC--CCeEEEEccc--cccHHHHHHhcCCCCceeeecC
Q 031001           10 KPIYLYINSSGTQNEKKESVGAETDAY-------AIADAMAYCK--SKVYTVNCGM--AYGQAAMLLSVGAKGYRGLQPN   78 (167)
Q Consensus        10 ~~I~l~INS~G~~~~~~~~~G~v~~g~-------aI~~~i~~~~--~~V~t~~~G~--aaS~a~~i~~ag~~~~R~~~p~   78 (167)
                      .|+.+.+.|.|         +.+.++.       .++..+..++  .|+.+++.|-  |++.+++.++.+  +..++.|+
T Consensus       109 ~PvV~l~dSGG---------aRlqEg~~~L~~~a~i~~~~~~ls~~VP~I~vv~G~~gc~GG~a~~a~l~--D~iIm~~~  177 (301)
T PRK07189        109 TAVLLLFETGG---------VRLQEANAGLAAIAEIMRAIVDLRAAVPVIGLIGGRVGCFGGMGIAAALC--SYLIVSEE  177 (301)
T ss_pred             CCEEEEecCCC---------cCccchHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCCCcHHHHHHHhcC--CEEEEECC
Confidence            58999999999         5554332       2343333333  7999999998  888888887777  57899999


Q ss_pred             Cceeeeccc
Q 031001           79 SSTKLYLPV   87 (167)
Q Consensus        79 s~~miH~p~   87 (167)
                      +++.+--|.
T Consensus       178 a~iglaGP~  186 (301)
T PRK07189        178 GRLGLSGPE  186 (301)
T ss_pred             cEEeccCHH
Confidence            988777664

>KOG1679 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]

Probab=91.17  E-value=0.25  Score=40.50  Aligned_cols=100  Identities=13%  Similarity=0.120  Sum_probs=71.0

Q ss_pred             HHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccc---cCCcCChhHHHHHHHHHHHHH
Q 031001           33 TDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVV---GRSSGPVTDMWRKAKDLEANA  109 (167)
Q Consensus        33 ~~g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~---~~~~G~~~dl~~~~~~l~~~~  109 (167)
                      ..-..+++.|..++.||.+-+.|.|.+.|-=++++||  -|.+..++.+.+-.-.+   .+..|+ .-+          -
T Consensus       111 ~~lR~~~~dIe~Lp~P~IAAidG~ALGGGLElALACD--iRva~s~akmGLvET~laiiPGaGGt-QRL----------p  177 (291)
T KOG1679|consen  111 NGLRGLFNDIERLPQPVIAAIDGAALGGGLELALACD--IRVAASSAKMGLVETKLAIIPGAGGT-QRL----------P  177 (291)
T ss_pred             HHHHHHHHHHHhCCccceehhcchhcccchhhhhhcc--ceehhhhccccccccceeeecCCCcc-chh----------H
Confidence            3445688889999999999999999999999999995  68999998887654332   122232 111          1


Q ss_pred             HHHHHHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001          110 ESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ  155 (167)
Q Consensus       110 ~~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~  155 (167)
                      +.+          ....-++++...+.|++.||...|+|.++++.+
T Consensus       178 R~v----------g~alaKELIftarvl~g~eA~~lGlVnhvv~qn  213 (291)
T KOG1679|consen  178 RIV----------GVALAKELIFTARVLNGAEAAKLGLVNHVVEQN  213 (291)
T ss_pred             HHH----------hHHHHHhHhhhheeccchhHHhcchHHHHHhcC
Confidence            111          111223445667889999999999999999876

>KOG0016 consensus Enoyl-CoA hydratase/isomerase [Lipid transport and metabolism]

Probab=89.45  E-value=0.4  Score=39.89  Aligned_cols=123  Identities=15%  Similarity=0.120  Sum_probs=73.8

Q ss_pred             eEEEEcCCCCCCCCCCCCCCH--------HH-------HHH----HHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCc
Q 031001           12 IYLYINSSGTQNEKKESVGAE--------TD-------AYA----IADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGY   72 (167)
Q Consensus        12 I~l~INS~G~~~~~~~~~G~v--------~~-------g~a----I~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~   72 (167)
                      ....+.|.|.-.+.|-.+...        .+       ...    ..+++-.++.|+.+.+.|-|-+.|+.|+.-+|  -
T Consensus        54 ~~tv~s~~G~~f~sG~Df~~~~~~~~~d~~~~~~~~~~~v~~~~~~v~~fi~f~Kplia~vNGPAIGlgasil~lcD--~  131 (266)
T KOG0016|consen   54 SITVLSSNGSYFCSGLDFSPFAKALDDDANEESDKASKFVKNVSCFVNTFINFPKPLVALVNGPAIGLGASILPLCD--Y  131 (266)
T ss_pred             EEEEEecCccEEeeccccchhhhcCCCcccccchhhHHHHHHHHHHHHHHhcCCCCEEEEecCCccchhhHHhhhhh--e
Confidence            566667777655555444222        11       112    57788889999999999999999999988885  3


Q ss_pred             eeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEe
Q 031001           73 RGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKII  152 (167)
Q Consensus        73 R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~  152 (167)
                      .++.  -..-+|.|. . .-|+..|--....            +-+..  ....-.++|--..-|+|+||.+.|||++|.
T Consensus       132 V~A~--Dka~F~TPf-a-~lGq~PEG~Ss~t------------~p~im--G~~~A~E~ll~~~kltA~Ea~~~glVskif  193 (266)
T KOG0016|consen  132 VWAS--DKAWFQTPF-A-KLGQSPEGCSSVT------------LPKIM--GSASANEMLLFGEKLTAQEACEKGLVSKIF  193 (266)
T ss_pred             EEec--cceEEeccc-h-hcCCCCCcceeee------------ehHhh--chhhHHHHHHhCCcccHHHHHhcCchhhhc
Confidence            4555  444667786 2 2243322100000            00000  111112223335568999999999999998


Q ss_pred             CC
Q 031001          153 DS  154 (167)
Q Consensus       153 ~~  154 (167)
                      ..
T Consensus       194 ~~  195 (266)
T KOG0016|consen  194 PA  195 (266)
T ss_pred             Ch
Confidence            76

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	167
1tyf_A	193	The Structure Of Clpp At 2.3 Angstrom Resolution Su		9e-20
1yg8_A	193	The Structure Of A V6a Variant Of Clpp. Length = 19		9e-20
3mt6_R	207	Structure Of Clpp From Escherichia Coli In Complex		1e-19
3hln_A	193	Crystal Structure Of Clpp A153c Mutant With Inter-H		2e-19
4hnk_A	219	Crystal Structure Of An Enzyme Length = 219		7e-19
4gm2_A	205	The Crystal Structure Of A Peptidase From Plasmodiu		8e-19
3kti_A	199	Structure Of Clpp In Complex With Adep1 Length = 19		4e-18
3tt7_A	197	Structure Of Clpp From Bacillus Subtilis In Complex		4e-18
3ktg_A	199	Structure Of Clpp From Bacillus Subtilis In Monocli		5e-18
3tt6_A	196	Structure Of Clpp From Bacillus Subtilis In Compres		5e-18
3v5i_A	203	The Crystal Structure Of The Mutant Clpp S98a (Stap		1e-17
3st9_A	197	Crystal Structure Of Clpp In Heptameric Form From S		2e-17
3qwd_A	203	Crystal Structure Of Clpp From Staphylococcus Aureu		2e-17
2zl3_A	196	Crystal Structure Of H.Pylori Clpp S99a Length = 19		4e-16
2zl0_A	196	Crystal Structure Of H.Pylori Clpp Length = 196		5e-16
3q7h_A	195	Structure Of The Clpp Subunit Of The Atp-Dependent		9e-15
3p2l_A	201	Crystal Structure Of Atp-Dependent Clp Protease Sub		2e-13
2c8t_A	206	The 3.0 A Resolution Structure Of Caseinolytic Clp		4e-13
2ce3_A	200	Crystal Structure Of The Atp-Dependent Clp Protease		4e-13
2cby_A	208	Crystal Structure Of The Atp-Dependent Clp Protease		4e-13
1tg6_A	277	Crystallography And Mutagenesis Point To An Essenti		2e-12
2f6i_A	215	Crystal Structure Of The Clpp Protease Catalytic Do		4e-12
1y7o_A	218	The Structure Of Streptococcus Pneumoniae A153p Clp		1e-11

>pdb|1TYF|A Chain A, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests A Model For Atp-Dependent Proteolysis Length = 193

Iteration: 1
 Score = 92.4 bits (228), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 55/156 (35%), Positives = 82/156 (52%), Gaps = 10/156 (6%)
Query: 1   MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQ 60
           ++L+ +N  K IYLYINS G         G  T   +I D M + K  V T+  G A   
Sbjct: 48  LFLEAENPEKDIYLYINSPG---------GVITAGMSIYDTMQFIKPDVSTICMGQAASM 98
Query: 61  AAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGT 120
            A LL+ GAKG R   PNS   ++ P+ G   G  TD+   A+++        EL+A  T
Sbjct: 99  GAFLLTAGAKGKRFCLPNSRVMIHQPL-GGYQGQATDIEIHAREILKVKGRMNELMALHT 157
Query: 121 GKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQD 156
           G+  E+I +D +R +++ A EA+ YGL D I+  ++
Sbjct: 158 GQSLEQIERDTERDRFLSAPEAVEYGLVDSILTHRN 193

>pdb|1YG8|A Chain A, The Structure Of A V6a Variant Of Clpp. Length = 193

Iteration: 1
 Score = 92.4 bits (228), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 55/156 (35%), Positives = 82/156 (52%), Gaps = 10/156 (6%)
Query: 1   MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQ 60
           ++L+ +N  K IYLYINS G         G  T   +I D M + K  V T+  G A   
Sbjct: 48  LFLEAENPEKDIYLYINSPG---------GVITAGMSIYDTMQFIKPDVSTICMGQAASM 98
Query: 61  AAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGT 120
            A LL+ GAKG R   PNS   ++ P+ G   G  TD+   A+++        EL+A  T
Sbjct: 99  GAFLLTAGAKGKRFCLPNSRVMIHQPL-GGYQGQATDIEIHAREILKVKGRMNELMALHT 157
Query: 121 GKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQD 156
           G+  E+I +D +R +++ A EA+ YGL D I+  ++
Sbjct: 158 GQSLEQIERDTERDRFLSAPEAVEYGLVDSILTHRN 193

>pdb|3MT6|R Chain R, Structure Of Clpp From Escherichia Coli In Complex With Adep1 Length = 207

Iteration: 1
 Score = 92.4 bits (228), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 55/156 (35%), Positives = 82/156 (52%), Gaps = 10/156 (6%)
Query: 1   MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQ 60
           ++L+ +N  K IYLYINS G         G  T   +I D M + K  V T+  G A   
Sbjct: 62  LFLEAENPEKDIYLYINSPG---------GVITAGMSIYDTMQFIKPDVSTICMGQAASM 112
Query: 61  AAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGT 120
            A LL+ GAKG R   PNS   ++ P+ G   G  TD+   A+++        EL+A  T
Sbjct: 113 GAFLLTAGAKGKRFCLPNSRVMIHQPL-GGYQGQATDIEIHAREILKVKGRMNELMALHT 171
Query: 121 GKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQD 156
           G+  E+I +D +R +++ A EA+ YGL D I+  ++
Sbjct: 172 GQSLEQIERDTERDRFLSAPEAVEYGLVDSILTHRN 207

>pdb|3HLN|A Chain A, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer Disulfide Bonds Length = 193

Iteration: 1
 Score = 91.3 bits (225), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 54/156 (34%), Positives = 81/156 (51%), Gaps = 10/156 (6%)
Query: 1   MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQ 60
           ++L+ +N  K IYLYINS G         G  T   +I D M + K  V T+  G A   
Sbjct: 48  LFLEAENPEKDIYLYINSPG---------GVITAGMSIYDTMQFIKPDVSTICMGQAASM 98
Query: 61  AAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGT 120
            A LL+ GAKG R   PNS   ++ P +G   G  TD+    +++        EL+A  T
Sbjct: 99  GAFLLTAGAKGKRFCLPNSRVMIHQP-LGGYQGQATDIEIHCREILKVKGRMNELMALHT 157
Query: 121 GKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQD 156
           G+  E+I +D +R +++ A EA+ YGL D I+  ++
Sbjct: 158 GQSLEQIERDTERDRFLSAPEAVEYGLVDSILTHRN 193

>pdb|4HNK|A Chain A, Crystal Structure Of An Enzyme Length = 219

Iteration: 1
 Score = 89.7 bits (221), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 54/156 (34%), Positives = 84/156 (53%), Gaps = 1/156 (0%)
Query: 1   MWLDFDNASKPIYLYINSSG-TQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYG 59
           ++L++++  KPI+LYINS+G   N K  ++   TD  +I D + Y  S VYT   G AYG
Sbjct: 64  LYLEYESKRKPIHLYINSTGDIDNNKIINLNGITDVISIVDVINYISSDVYTYCLGKAYG 123
Query: 60  QAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKG 119
            A +L S G KGYR    NSS  L            T++  + K++    +  IE+++K 
Sbjct: 124 IACILASSGKKGYRFSLKNSSFCLNQSYSIIPFNQATNIEIQNKEIMNTKKKVIEIISKN 183
Query: 120 TGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155
           T K    I+  ++R KY  A EA+ + L D I++ +
Sbjct: 184 TEKDTNVISNVLERDKYFNADEAVDFKLIDHILEKE 219

>pdb|4GM2|A Chain A, The Crystal Structure Of A Peptidase From Plasmodium Falciparum Length = 205

Iteration: 1
 Score = 89.4 bits (220), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 54/156 (34%), Positives = 84/156 (53%), Gaps = 1/156 (0%)
Query: 1   MWLDFDNASKPIYLYINSSG-TQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYG 59
           ++L++++  KPI+LYINS+G   N K  ++   TD  +I D + Y  S VYT   G AYG
Sbjct: 50  LYLEYESKRKPIHLYINSTGDIDNNKIINLNGITDVISIVDVINYISSDVYTYCLGKAYG 109
Query: 60  QAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKG 119
            A +L S G KGYR    NSS  L            T++  + K++    +  IE+++K 
Sbjct: 110 IACILASSGKKGYRFSLKNSSFCLNQSYSIIPFNQATNIEIQNKEIMNTKKKVIEIISKN 169
Query: 120 TGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155
           T K    I+  ++R KY  A EA+ + L D I++ +
Sbjct: 170 TEKDTNVISNVLERDKYFNADEAVDFKLIDHILEKE 205

>pdb|3KTI|A Chain A, Structure Of Clpp In Complex With Adep1 Length = 199

Iteration: 1
 Score = 87.0 bits (214), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 56/152 (36%), Positives = 81/152 (53%), Gaps = 10/152 (6%)
Query: 1   MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQ 60
           ++L  ++  K I LYINS G         G+ T   AI D M + K KV T+  GMA   
Sbjct: 48  LFLAAEDPEKEISLYINSPG---------GSITAGMAIYDTMQFIKPKVSTICIGMAASM 98
Query: 61  AAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGT 120
            A LL+ G KG R   PNS   ++ P +G + G  T++   AK +    +   ++LA+ T
Sbjct: 99  GAFLLAAGEKGKRYALPNSEVMIHQP-LGGAQGQATEIEIAAKRILLLRDKLNKVLAERT 157
Query: 121 GKPKEEIAKDIQRPKYMQAKEAIVYGLADKII 152
           G+P E I +D  R  +  A+EA+ YGL DKI+
Sbjct: 158 GQPLEVIERDTDRDNFKSAEEALEYGLIDKIL 189

>pdb|3TT7|A Chain A, Structure Of Clpp From Bacillus Subtilis In Complex With Dfp Length = 197

Iteration: 1
 Score = 87.0 bits (214), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 56/152 (36%), Positives = 81/152 (53%), Gaps = 10/152 (6%)
Query: 1   MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQ 60
           ++L  ++  K I LYINS G         G+ T   AI D M + K KV T+  GMA   
Sbjct: 49  LFLAAEDPEKEISLYINSPG---------GSITAGMAIYDTMQFIKPKVSTICIGMAASM 99
Query: 61  AAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGT 120
            A LL+ G KG R   PNS   ++ P +G + G  T++   AK +    +   ++LA+ T
Sbjct: 100 GAFLLAAGEKGKRYALPNSEVMIHQP-LGGAQGQATEIEIAAKRILLLRDKLNKVLAERT 158
Query: 121 GKPKEEIAKDIQRPKYMQAKEAIVYGLADKII 152
           G+P E I +D  R  +  A+EA+ YGL DKI+
Sbjct: 159 GQPLEVIERDTDRDNFKSAEEALEYGLIDKIL 190

>pdb|3KTG|A Chain A, Structure Of Clpp From Bacillus Subtilis In Monoclinic Crystal Form Length = 199

Iteration: 1
 Score = 87.0 bits (214), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 56/152 (36%), Positives = 81/152 (53%), Gaps = 10/152 (6%)
Query: 1   MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQ 60
           ++L  ++  K I LYINS G         G+ T   AI D M + K KV T+  GMA   
Sbjct: 48  LFLAAEDPEKEISLYINSPG---------GSITAGMAIYDTMQFIKPKVSTICIGMAASM 98
Query: 61  AAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGT 120
            A LL+ G KG R   PNS   ++ P +G + G  T++   AK +    +   ++LA+ T
Sbjct: 99  GAFLLAAGEKGKRYALPNSEVMIHQP-LGGAQGQATEIEIAAKRILLLRDKLNKVLAERT 157
Query: 121 GKPKEEIAKDIQRPKYMQAKEAIVYGLADKII 152
           G+P E I +D  R  +  A+EA+ YGL DKI+
Sbjct: 158 GQPLEVIERDTDRDNFKSAEEALEYGLIDKIL 189

>pdb|3TT6|A Chain A, Structure Of Clpp From Bacillus Subtilis In Compressed State Length = 196

Iteration: 1
 Score = 87.0 bits (214), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 56/152 (36%), Positives = 81/152 (53%), Gaps = 10/152 (6%)
Query: 1   MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQ 60
           ++L  ++  K I LYINS G         G+ T   AI D M + K KV T+  GMA   
Sbjct: 48  LFLAAEDPEKEISLYINSPG---------GSITAGMAIYDTMQFIKPKVSTICIGMAASM 98
Query: 61  AAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGT 120
            A LL+ G KG R   PNS   ++ P +G + G  T++   AK +    +   ++LA+ T
Sbjct: 99  GAFLLAAGEKGKRYALPNSEVMIHQP-LGGAQGQATEIEIAAKRILLLRDKLNKVLAERT 157
Query: 121 GKPKEEIAKDIQRPKYMQAKEAIVYGLADKII 152
           G+P E I +D  R  +  A+EA+ YGL DKI+
Sbjct: 158 GQPLEVIERDTDRDNFKSAEEALEYGLIDKIL 189

>pdb|3V5I|A Chain A, The Crystal Structure Of The Mutant Clpp S98a (Staphylococcus Aureus) Length = 203

Iteration: 1
 Score = 85.1 bits (209), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 51/152 (33%), Positives = 81/152 (53%), Gaps = 10/152 (6%)
Query: 1   MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQ 60
           ++L   ++ K IYLYINS G         G+ T  +AI D + + K  V T+  GMA   
Sbjct: 49  LFLQAQDSEKDIYLYINSPG---------GSVTAGFAIYDTIQHIKPDVQTICIGMAAAM 99
Query: 61  AAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGT 120
            + LL+ GAKG R   PN+   ++ P +G + G  T++   A  +    E    +L++ T
Sbjct: 100 GSFLLAAGAKGKRFALPNAEVMIHQP-LGGAQGQATEIEIAANHILKTREKLNRILSERT 158
Query: 121 GKPKEEIAKDIQRPKYMQAKEAIVYGLADKII 152
           G+  E+I KD  R  ++ A+EA  YGL D+++
Sbjct: 159 GQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVM 190

>pdb|3ST9|A Chain A, Crystal Structure Of Clpp In Heptameric Form From Staphylococcus Aureus Length = 197

Iteration: 1
 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/152 (33%), Positives = 81/152 (53%), Gaps = 10/152 (6%)
Query: 1   MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQ 60
           ++L   ++ K IYLYINS G         G+ T  +AI D + + K  V T+  GMA   
Sbjct: 51  LFLQAQDSEKDIYLYINSPG---------GSVTAGFAIYDTIQHIKPDVQTICIGMAASM 101
Query: 61  AAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGT 120
            + LL+ GAKG R   PN+   ++ P +G + G  T++   A  +    E    +L++ T
Sbjct: 102 GSFLLAAGAKGKRFALPNAEVMIHQP-LGGAQGQATEIEIAANHILKTREKLNRILSERT 160
Query: 121 GKPKEEIAKDIQRPKYMQAKEAIVYGLADKII 152
           G+  E+I KD  R  ++ A+EA  YGL D+++
Sbjct: 161 GQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVM 192

>pdb|3QWD|A Chain A, Crystal Structure Of Clpp From Staphylococcus Aureus Length = 203

Iteration: 1
 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/152 (33%), Positives = 81/152 (53%), Gaps = 10/152 (6%)
Query: 1   MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQ 60
           ++L   ++ K IYLYINS G         G+ T  +AI D + + K  V T+  GMA   
Sbjct: 49  LFLQAQDSEKDIYLYINSPG---------GSVTAGFAIYDTIQHIKPDVQTICIGMAASM 99
Query: 61  AAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGT 120
            + LL+ GAKG R   PN+   ++ P +G + G  T++   A  +    E    +L++ T
Sbjct: 100 GSFLLAAGAKGKRFALPNAEVMIHQP-LGGAQGQATEIEIAANHILKTREKLNRILSERT 158
Query: 121 GKPKEEIAKDIQRPKYMQAKEAIVYGLADKII 152
           G+  E+I KD  R  ++ A+EA  YGL D+++
Sbjct: 159 GQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVM 190

>pdb|2ZL3|A Chain A, Crystal Structure Of H.Pylori Clpp S99a Length = 196

Iteration: 1
 Score = 80.5 bits (197), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 53/152 (34%), Positives = 79/152 (51%), Gaps = 10/152 (6%)
Query: 1   MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQ 60
           ++L+ ++  K I LYINS G         G  T   +I D M + +  V T+  G A   
Sbjct: 50  LFLEAEDPEKDIGLYINSPG---------GVITSGLSIYDTMNFIRPDVSTICIGQAAAM 100
Query: 61  AAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGT 120
            A LLS GAKG R   P+S   ++ P+ G + G  +D+   + ++         +LA+ +
Sbjct: 101 GAFLLSCGAKGKRFSLPHSRIMIHQPL-GGAQGQASDIEIISNEILRLKGLMNSILAQNS 159
Query: 121 GKPKEEIAKDIQRPKYMQAKEAIVYGLADKII 152
           G+  E+IAKD  R  YM AKEA  YGL DK++
Sbjct: 160 GQSLEQIAKDTDRDFYMSAKEAKEYGLIDKVL 191

>pdb|2ZL0|A Chain A, Crystal Structure Of H.Pylori Clpp Length = 196

Iteration: 1
 Score = 80.5 bits (197), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 53/152 (34%), Positives = 79/152 (51%), Gaps = 10/152 (6%)
Query: 1   MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQ 60
           ++L+ ++  K I LYINS G         G  T   +I D M + +  V T+  G A   
Sbjct: 50  LFLEAEDPEKDIGLYINSPG---------GVITSGLSIYDTMNFIRPDVSTICIGQAASM 100
Query: 61  AAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGT 120
            A LLS GAKG R   P+S   ++ P+ G + G  +D+   + ++         +LA+ +
Sbjct: 101 GAFLLSCGAKGKRFSLPHSRIMIHQPL-GGAQGQASDIEIISNEILRLKGLMNSILAQNS 159
Query: 121 GKPKEEIAKDIQRPKYMQAKEAIVYGLADKII 152
           G+  E+IAKD  R  YM AKEA  YGL DK++
Sbjct: 160 GQSLEQIAKDTDRDFYMSAKEAKEYGLIDKVL 191

>pdb|3Q7H|A Chain A, Structure Of The Clpp Subunit Of The Atp-Dependent Clp Protease From Coxiella Burnetii Length = 195

Iteration: 1
 Score = 76.3 bits (186), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 57/152 (37%), Positives = 81/152 (53%), Gaps = 10/152 (6%)
Query: 1   MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQ 60
           ++L+ +N +K I LYINS G         GA T A AI D   + K  V T+  G A   
Sbjct: 50  LFLESENPNKDINLYINSPG---------GAVTSAXAIYDTXQFVKPDVRTLCIGQAASA 100
Query: 61  AAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGT 120
            A+LL+ GAKG R   P+SS  ++  V+G   G  TD+   AK  +  ++   ++LAK T
Sbjct: 101 GALLLAGGAKGKRHCLPHSSVXIH-QVLGGYQGQGTDIQIHAKQTQRVSDQLNQILAKHT 159
Query: 121 GKPKEEIAKDIQRPKYMQAKEAIVYGLADKII 152
           GK  E + KD  R  ++  +EA+ YGL D I 
Sbjct: 160 GKDIERVEKDTNRDYFLTPEEAVEYGLIDSIF 191

>pdb|3P2L|A Chain A, Crystal Structure Of Atp-Dependent Clp Protease Subunit P From Francisella Tularensis Length = 201

Iteration: 1
 Score = 71.6 bits (174), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/157 (31%), Positives = 78/157 (49%), Gaps = 10/157 (6%)
Query: 1   MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQ 60
           ++L+ ++  K IY YINS G        V          D   + K  V T+  G+A   
Sbjct: 52  LFLESEDPDKDIYFYINSPGGXVTAGXGV---------YDTXQFIKPDVSTICIGLAASX 102
Query: 61  AAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGT 120
            ++LL+ GAKG R   P+S   ++ P+ G   G  +D+   AK++    +   ++LA  T
Sbjct: 103 GSLLLAGGAKGKRYSLPSSQIXIHQPL-GGFRGQASDIEIHAKNILRIKDRLNKVLAHHT 161
Query: 121 GKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDA 157
           G+  E I KD  R  +  A EA  YGL D +I+S++A
Sbjct: 162 GQDLETIVKDTDRDNFXXADEAKAYGLIDHVIESREA 198

>pdb|2C8T|A Chain A, The 3.0 A Resolution Structure Of Caseinolytic Clp Protease 1 From Mycobacterium Tuberculosis Length = 206

Iteration: 1
 Score = 70.9 bits (172), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 49/152 (32%), Positives = 71/152 (46%), Gaps = 10/152 (6%)
Query: 1   MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQ 60
           + L  ++ASK I LYINS G         G+ +   AI D M      + T   GMA   
Sbjct: 50  LLLAAEDASKDISLYINSPG---------GSISAGMAIYDTMVLAPCDIATYAMGMAASM 100
Query: 61  AAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGT 120
              LL+ G KG R   P++   ++ P+ G  +G   D+  +A+      +    L A+ T
Sbjct: 101 GEFLLAAGTKGKRYALPHARILMHQPL-GGVTGSAADIAIQAEQFAVIKKEMFRLNAEFT 159
Query: 121 GKPKEEIAKDIQRPKYMQAKEAIVYGLADKII 152
           G+P E I  D  R ++  A EA+ YG  D II
Sbjct: 160 GQPIERIEADSDRDRWFTAAEALEYGFVDHII 191

>pdb|2CE3|A Chain A, Crystal Structure Of The Atp-Dependent Clp Protease Proteolytic Subunit 1 (Clpp1) From Mycobacterium Tuberculosis Length = 200

Iteration: 1
 Score = 70.5 bits (171), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 49/152 (32%), Positives = 71/152 (46%), Gaps = 10/152 (6%)
Query: 1   MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQ 60
           + L  ++ASK I LYINS G         G+ +   AI D M      + T   GMA   
Sbjct: 49  LLLAAEDASKDISLYINSPG---------GSISAGMAIYDTMVLAPCDIATYAMGMAASM 99
Query: 61  AAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGT 120
              LL+ G KG R   P++   ++ P+ G  +G   D+  +A+      +    L A+ T
Sbjct: 100 GEFLLAAGTKGKRYALPHARILMHQPL-GGVTGSAADIAIQAEQFAVIKKEMFRLNAEFT 158
Query: 121 GKPKEEIAKDIQRPKYMQAKEAIVYGLADKII 152
           G+P E I  D  R ++  A EA+ YG  D II
Sbjct: 159 GQPIERIEADSDRDRWFTAAEALEYGFVDHII 190

>pdb|2CBY|A Chain A, Crystal Structure Of The Atp-Dependent Clp Protease Proteolytic Subunit 1 (Clpp1) From Mycobacterium Tuberculosis Length = 208

Iteration: 1
 Score = 70.5 bits (171), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 49/152 (32%), Positives = 71/152 (46%), Gaps = 10/152 (6%)
Query: 1   MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQ 60
           + L  ++ASK I LYINS G         G+ +   AI D M      + T   GMA   
Sbjct: 49  LLLAAEDASKDISLYINSPG---------GSISAGMAIYDTMVLAPCDIATYAMGMAASM 99
Query: 61  AAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGT 120
              LL+ G KG R   P++   ++ P+ G  +G   D+  +A+      +    L A+ T
Sbjct: 100 GEFLLAAGTKGKRYALPHARILMHQPL-GGVTGSAADIAIQAEQFAVIKKEMFRLNAEFT 158
Query: 121 GKPKEEIAKDIQRPKYMQAKEAIVYGLADKII 152
           G+P E I  D  R ++  A EA+ YG  D II
Sbjct: 159 GQPIERIEADSDRDRWFTAAEALEYGFVDHII 190

>pdb|1TG6|A Chain A, Crystallography And Mutagenesis Point To An Essential Role For The N- Terminus Of Human Mitochondrial Clpp Length = 277

Iteration: 1
 Score = 68.2 bits (165), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 75/152 (49%), Gaps = 10/152 (6%)
Query: 1   MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQ 60
           ++L  ++  KPI++YINS G         G  T   AI D M Y  + + T   G A   
Sbjct: 104 LFLQSESNKKPIHMYINSPG---------GVVTAGLAIYDTMQYILNPICTWCVGQAASM 154
Query: 61  AAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGT 120
            ++LL+ G  G R   PNS   ++ P  G + G  TD+  +A+++    +    + AK T
Sbjct: 155 GSLLLAAGTPGMRHSLPNSRIMIHQP-SGGARGQATDIAIQAEEIMKLKKQLYNIYAKHT 213
Query: 121 GKPKEEIAKDIQRPKYMQAKEAIVYGLADKII 152
            +  + I   ++R +YM   EA  +G+ DK++
Sbjct: 214 KQSLQVIESAMERDRYMSPMEAQEFGILDKVL 245

>pdb|2F6I|A Chain A, Crystal Structure Of The Clpp Protease Catalytic Domain From Plasmodium Falciparum Length = 215

Iteration: 1
 Score = 67.0 bits (162), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 78/155 (50%), Gaps = 11/155 (7%)
Query: 1   MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQ 60
           ++LD  N +  I +YINS G         G+  +  AI D   Y KS + T++ G+    
Sbjct: 61  LYLDNINHND-IKIYINSPG---------GSINEGLAILDIFNYIKSDIQTISFGLVASM 110
Query: 61  AAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGT 120
           A+++L+ G KG R   PN    ++ P +G + G   D+  + K++    +     L+  T
Sbjct: 111 ASVILASGKKGKRKSLPNCRIMIHQP-LGNAFGHPQDIEIQTKEILYLKKLLYHYLSSFT 169
Query: 121 GKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155
            +  E I KD  R  YM A EA  YG+ D++I+++
Sbjct: 170 NQTVETIEKDSDRDYYMNALEAKQYGIIDEVIETK 204

>pdb|1Y7O|A Chain A, The Structure Of Streptococcus Pneumoniae A153p Clpp Length = 218

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 74/152 (48%), Gaps = 10/152 (6%)
Query: 1   MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQ 60
           ++LD  +++K IYLY+N+ G         G+ +   AI D   + K+ V T+  G A   
Sbjct: 67  LFLDAQDSTKDIYLYVNTPG---------GSVSAGLAIVDTXNFIKADVQTIVXGXAASX 117
Query: 61  AAMLLSVGAKGYRGLQPNSSTKLYLP-VVGRSSGPVTDMWRKAKDLEANAESYIELLAKG 119
             ++ S GAKG R   PN+   ++ P          TDM    + L     +  ++LA+ 
Sbjct: 118 GTVIASSGAKGKRFXLPNAEYXIHQPXGGTGGGTQQTDMAIAPEHLLKTRNTLEKILAEN 177
Query: 120 TGKPKEEIAKDIQRPKYMQAKEAIVYGLADKI 151
           +G+  E++  D +R  +  A+E + YG  D+I
Sbjct: 178 SGQSXEKVHADAERDNWXSAQETLEYGFIDEI 209

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	167
1yg6_A	193	ATP-dependent CLP protease proteolytic subunit; en	1e-33
3p2l_A	201	ATP-dependent CLP protease proteolytic subunit; st	6e-33
1tg6_A	277	Putative ATP-dependent CLP protease proteolytic S;	1e-32
3qwd_A	203	ATP-dependent CLP protease proteolytic subunit; ca	3e-32
1y7o_A	218	ATP-dependent CLP protease proteolytic subunit; hy	1e-31
2cby_A	208	ATP-dependent CLP protease proteolytic subunit 1;	9e-31
2f6i_A	215	ATP-dependent CLP protease, putative; structural g	6e-29
3viv_A	230	441AA long hypothetical NFED protein; protein-pept	3e-14

>1yg6_A ATP-dependent CLP protease proteolytic subunit; endopeptidase CLP, caseinolytic protease, protease TI, heat shock protein F21.5, hydrolase; 1.90A {Escherichia coli} SCOP: c.14.1.1 PDB: 1tyf_A 2fzs_A* 3mt6_R 1yg8_A 3hln_A 2zl2_A 2zl0_A 2zl4_A 2zl3_A 3tt7_A* 3tt6_A 3ktg_A 3kth_A 3kti_A* 3ktj_A* 3ktk_A* 3q7h_A Length = 193

 Score =  116 bits (294), Expect = 1e-33
 Identities = 55/154 (35%), Positives = 80/154 (51%), Gaps = 10/154 (6%)

Query: 3   LDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAA 62
           L+ +N  K IYLYINS G         G  T   +I D M + K  V T+  G A    A
Sbjct: 50  LEAENPEKDIYLYINSPG---------GVITAGMSIYDTMQFIKPDVSTICMGQAASMGA 100

Query: 63  MLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGK 122
            LL+ GAKG R   PNS   ++ P+ G   G  TD+   A+++        EL+A  TG+
Sbjct: 101 FLLTAGAKGKRFCLPNSRVMIHQPL-GGYQGQATDIEIHAREILKVKGRMNELMALHTGQ 159

Query: 123 PKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQD 156
             E+I +D +R +++ A EA+ YGL D I+  ++
Sbjct: 160 SLEQIERDTERDRFLSAPEAVEYGLVDSILTHRN 193

>3p2l_A ATP-dependent CLP protease proteolytic subunit; structural genomics, center for structural genomics of infec diseases, csgid; 2.29A {Francisella tularensis subsp} Length = 201

 Score =  114 bits (289), Expect = 6e-33
 Identities = 53/156 (33%), Positives = 80/156 (51%), Gaps = 10/156 (6%)

Query: 3   LDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAA 62
           L+ ++  K IY YINS G         G  T    + D M + K  V T+  G+A    +
Sbjct: 54  LESEDPDKDIYFYINSPG---------GMVTAGMGVYDTMQFIKPDVSTICIGLAASMGS 104

Query: 63  MLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGK 122
           +LL+ GAKG R   P+S   ++ P+ G   G  +D+   AK++    +   ++LA  TG+
Sbjct: 105 LLLAGGAKGKRYSLPSSQIMIHQPL-GGFRGQASDIEIHAKNILRIKDRLNKVLAHHTGQ 163

Query: 123 PKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDAA 158
             E I KD  R  +M A EA  YGL D +I+S++A 
Sbjct: 164 DLETIVKDTDRDNFMMADEAKAYGLIDHVIESREAI 199

>1tg6_A Putative ATP-dependent CLP protease proteolytic S; mitochondrial CLPP, CLP/HSP 100, ATP-dependent protease, HYD; HET: FME; 2.10A {Homo sapiens} SCOP: c.14.1.1 Length = 277

 Score =  116 bits (292), Expect = 1e-32
 Identities = 46/160 (28%), Positives = 74/160 (46%), Gaps = 10/160 (6%)

Query: 3   LDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAA 62
           L  ++  KPI++YINS G         G  T   AI D M Y  + + T   G A    +
Sbjct: 106 LQSESNKKPIHMYINSPG---------GVVTAGLAIYDTMQYILNPICTWCVGQAASMGS 156

Query: 63  MLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGK 122
           +LL+ G  G R   PNS   ++ P  G + G  TD+  +A+++    +    + AK T +
Sbjct: 157 LLLAAGTPGMRHSLPNSRIMIHQPS-GGARGQATDIAIQAEEIMKLKKQLYNIYAKHTKQ 215

Query: 123 PKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDAAYEKR 162
             + I   ++R +YM   EA  +G+ DK++       E  
Sbjct: 216 SLQVIESAMERDRYMSPMEAQEFGILDKVLVHPPQDGEDE 255

>3qwd_A ATP-dependent CLP protease proteolytic subunit; caseinolytic protease, serin-protease, hydrolase; 2.10A {Staphylococcus aureus subsp} PDB: 3v5e_A 3v5i_A 3sta_V 3st9_A Length = 203

 Score =  113 bits (285), Expect = 3e-32
 Identities = 51/160 (31%), Positives = 81/160 (50%), Gaps = 10/160 (6%)

Query: 3   LDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAA 62
           L   ++ K IYLYINS G         G+ T  +AI D + + K  V T+  GMA    +
Sbjct: 51  LQAQDSEKDIYLYINSPG---------GSVTAGFAIYDTIQHIKPDVQTICIGMAASMGS 101

Query: 63  MLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGK 122
            LL+ GAKG R   PN+   ++ P+ G + G  T++   A  +    E    +L++ TG+
Sbjct: 102 FLLAAGAKGKRFALPNAEVMIHQPL-GGAQGQATEIEIAANHILKTREKLNRILSERTGQ 160

Query: 123 PKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDAAYEKR 162
             E+I KD  R  ++ A+EA  YGL D+++  +      +
Sbjct: 161 SIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVPETKWSHPQ 200

>1y7o_A ATP-dependent CLP protease proteolytic subunit; hydrolase; 2.51A {Streptococcus pneumoniae} SCOP: c.14.1.1 Length = 218

 Score =  111 bits (281), Expect = 1e-31
 Identities = 47/153 (30%), Positives = 80/153 (52%), Gaps = 10/153 (6%)

Query: 3   LDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAA 62
           LD  +++K IYLY+N+ G         G+ +   AI D M + K+ V T+  GMA     
Sbjct: 69  LDAQDSTKDIYLYVNTPG---------GSVSAGLAIVDTMNFIKADVQTIVMGMAASMGT 119

Query: 63  MLLSVGAKGYRGLQPNSSTKLYLPVVG-RSSGPVTDMWRKAKDLEANAESYIELLAKGTG 121
           ++ S GAKG R + PN+   ++ P+ G       TDM    + L     +  ++LA+ +G
Sbjct: 120 VIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAPEHLLKTRNTLEKILAENSG 179

Query: 122 KPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDS 154
           +  E++  D +R  +M A+E + YG  D+I+ +
Sbjct: 180 QSMEKVHADAERDNWMSAQETLEYGFIDEIMAN 212

>2cby_A ATP-dependent CLP protease proteolytic subunit 1; serine protease, endopept mycobacterium tuberculosis, ATP-dependent protease; 2.6A {Mycobacterium tuberculosis} SCOP: c.14.1.1 PDB: 2c8t_A 2ce3_A Length = 208

 Score =  109 bits (275), Expect = 9e-31
 Identities = 50/161 (31%), Positives = 73/161 (45%), Gaps = 10/161 (6%)

Query: 3   LDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAA 62
           L  ++ASK I LYINS G         G+ +   AI D M      + T   GMA     
Sbjct: 51  LAAEDASKDISLYINSPG---------GSISAGMAIYDTMVLAPCDIATYAMGMAASMGE 101

Query: 63  MLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGK 122
            LL+ G KG R   P++   ++ P+ G  +G   D+  +A+      +    L A+ TG+
Sbjct: 102 FLLAAGTKGKRYALPHARILMHQPLGG-VTGSAADIAIQAEQFAVIKKEMFRLNAEFTGQ 160

Query: 123 PKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDAAYEKRV 163
           P E I  D  R ++  A EA+ YG  D II       E ++
Sbjct: 161 PIERIEADSDRDRWFTAAEALEYGFVDHIITRAHVNGEAQL 201

>2f6i_A ATP-dependent CLP protease, putative; structural genomics, structural genomics conso SGC, hydrolase; 2.45A {Plasmodium falciparum} SCOP: c.14.1.1 Length = 215

 Score =  104 bits (263), Expect = 6e-29
 Identities = 44/147 (29%), Positives = 72/147 (48%), Gaps = 10/147 (6%)

Query: 9   SKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVG 68
              I +YINS G         G+  +  AI D   Y KS + T++ G+    A+++L+ G
Sbjct: 68  HNDIKIYINSPG---------GSINEGLAILDIFNYIKSDIQTISFGLVASMASVILASG 118

Query: 69  AKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIA 128
            KG R   PN    ++ P+ G + G   D+  + K++    +     L+  T +  E I 
Sbjct: 119 KKGKRKSLPNCRIMIHQPL-GNAFGHPQDIEIQTKEILYLKKLLYHYLSSFTNQTVETIE 177

Query: 129 KDIQRPKYMQAKEAIVYGLADKIIDSQ 155
           KD  R  YM A EA  YG+ D++I+++
Sbjct: 178 KDSDRDYYMNALEAKQYGIIDEVIETK 204

>3viv_A 441AA long hypothetical NFED protein; protein-peptide complex, alpha / beta motif, protease, membr protein stomatin, hydrolase-protein binding complex; 2.25A {Pyrococcus horikoshii} PDB: 3bpp_A 2deo_A Length = 230

 Score = 66.9 bits (163), Expect = 3e-14
 Identities = 23/159 (14%), Positives = 53/159 (33%), Gaps = 16/159 (10%)

Query: 6   DNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGM---AYGQAA 62
            + ++ I + +++ G         G       I   +   K  V          A     
Sbjct: 36  QDNAEAIIIELDTPG---------GRADAMMNIVQRIQQSKIPVIIYVYPPGASAASAGT 86

Query: 63  MLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGK 122
            +          + P +S     P++G  S   + +            +YI+ LA+ +G+
Sbjct: 87  YIALGSHLIA--MAPGTSIGACRPILG-YSQNGSIIEAPPAITNY-FIAYIKSLAQESGR 142

Query: 123 PKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDAAYEK 161
                 + I +   +  +EA+ YG+ + +    +   +K
Sbjct: 143 NATIAEEFITKDLSLTPEEALKYGVIEVVARDINELLKK 181

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	167
4gm2_A	205	ATP-dependent CLP protease proteolytic subunit; st	100.0
3p2l_A	201	ATP-dependent CLP protease proteolytic subunit; st	100.0
3qwd_A	203	ATP-dependent CLP protease proteolytic subunit; ca	100.0
1tg6_A	277	Putative ATP-dependent CLP protease proteolytic S;	100.0
1yg6_A	193	ATP-dependent CLP protease proteolytic subunit; en	100.0
2f6i_A	215	ATP-dependent CLP protease, putative; structural g	100.0
2cby_A	208	ATP-dependent CLP protease proteolytic subunit 1;	100.0
1y7o_A	218	ATP-dependent CLP protease proteolytic subunit; hy	100.0
3viv_A	230	441AA long hypothetical NFED protein; protein-pept	99.96
3bf0_A	593	Protease 4; bacterial, hydrolase, inner membrane,	99.81
3rst_A	240	Signal peptide peptidase SPPA; alpha/beta protein	99.68
3bf0_A	593	Protease 4; bacterial, hydrolase, inner membrane,	99.61
2f9i_A	327	Acetyl-coenzyme A carboxylase carboxyl transferase	98.49
3lke_A	263	Enoyl-COA hydratase; nysgrc, target 112 structural	98.47
2f9y_A	339	Acetyl-COA carboxylase, carboxyltransferase alpha;	98.46
2pbp_A	258	Enoyl-COA hydratase subunit I; B-oxidation, struct	98.46
1hzd_A	272	AUH, AU-binding protein/enoyl-COA hydratase; RNA-b	98.42
1dci_A	275	Dienoyl-COA isomerase; lyase; 1.50A {Rattus norveg	98.42
1uiy_A	253	Enoyl-COA hydratase; lyase, beta-oxidation, croton	98.38
2a7k_A	250	CARB; crotonase, antibiotic, beta-lactam, biosynth	98.38
2ej5_A	257	Enoyl-COA hydratase subunit II; structural genomic	98.37
2ppy_A	265	Enoyl-COA hydratase; beta-oxidation, fatty acid me	98.37
3kqf_A	265	Enoyl-COA hydratase/isomerase family protein; IDP0	98.35
1sg4_A	260	3,2-trans-enoyl-COA isomerase, mitochondrial; crot	98.33
3p5m_A	255	Enoyl-COA hydratase/isomerase; seattle structural	98.31
3gow_A	254	PAAG, probable enoyl-COA hydratase; the spiral fol	98.3
3r6h_A	233	Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium m	98.3
3qmj_A	256	Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid,	98.3
4di1_A	277	Enoyl-COA hydratase ECHA17; structural genomics, s	98.28
3fdu_A	266	Putative enoyl-COA hydratase/isomerase; structural	98.28
3pea_A	261	Enoyl-COA hydratase/isomerase family protein; stru	98.26
1pjh_A	280	Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral	98.26
3ot6_A	232	Enoyl-COA hydratase/isomerase family protein; stru	98.26
2vx2_A	287	Enoyl-COA hydratase domain-containing protein 3; i	98.23
3moy_A	263	Probable enoyl-COA hydratase; ssgcid, seattle stru	98.23
3hin_A	275	Putative 3-hydroxybutyryl-COA dehydratase; structu	98.21
3hrx_A	254	Probable enoyl-COA hydratase; the spiral fold, the	98.21
2uzf_A	273	Naphthoate synthase; lyase, menaquinone biosynthes	98.21
2q35_A	243	CURF; crotonase, lyase; 1.65A {Lyngbya majuscula}	98.21
2gtr_A	261	CDY-like, chromodomain Y-like protein; structural	98.19
3isa_A	254	Putative enoyl-COA hydratase/isomerase; structural	98.19
3g64_A	279	Putative enoyl-COA hydratase; alpha-beta structure	98.19
1wz8_A	264	Enoyl-COA hydratase; lyase, crotonase, hexamer, st	98.18
3i47_A	268	Enoyl COA hydratase/isomerase (crotonase); structu	98.18
2f6q_A	280	Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxis	98.17
3sll_A	290	Probable enoyl-COA hydratase/isomerase; structural	98.16
3he2_A	264	Enoyl-COA hydratase ECHA6; fatty acid metabolism,	98.15
3myb_A	286	Enoyl-COA hydratase; ssgcid, struct genomics, seat	98.14
2fbm_A	291	Y chromosome chromodomain protein 1, telomeric IS;	98.14
3l3s_A	263	Enoyl-COA hydratase/isomerase family protein; crot	98.14
3hp0_A	267	Putative polyketide biosynthesis enoyl-COA hydrata	98.13
1ef8_A	261	Methylmalonyl COA decarboxylase; lyase; 1.85A {Esc	98.13
3oc7_A	267	Enoyl-COA hydratase; seattle structural genomics c	98.12
3qk8_A	272	Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SB	98.12
4fzw_A	258	2,3-dehydroadipyl-COA hydratase; structural genomi	98.12
4fzw_C	274	1,2-epoxyphenylacetyl-COA isomerase; structural ge	98.12
3njd_A	333	Enoyl-COA hydratase; ssgcid, mycobacerium smegmati	98.12
1szo_A	257	6-oxocamphor hydrolase; enzyme-product complex; HE	98.1
3h81_A	278	Enoyl-COA hydratase ECHA8; niaid, decode, infectio	98.09
1nzy_A	269	Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogen	98.07
3gkb_A	287	Putative enoyl-COA hydratase; structural genomics,	98.07
1mj3_A	260	Enoyl-COA hydratase, mitochondrial; homohexamer, l	98.06
3rsi_A	265	Putative enoyl-COA hydratase/isomerase; structural	98.05
3rrv_A	276	Enoyl-COA hydratase/isomerase; structural genomics	98.04
3t89_A	289	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	98.04
3pe8_A	256	Enoyl-COA hydratase; emerald biostructures, struct	98.01
4eml_A	275	Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coe	97.99
3t8b_A	334	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	97.97
2j5i_A	276	P-hydroxycinnamoyl COA hydratase/lyase; vanillin,	97.97
3qxz_A	265	Enoyl-COA hydratase/isomerase; structural genomics	97.94
3m6n_A	305	RPFF protein; enoyl-COA hydratase, lyase; 1.80A {X	97.94
3qre_A	298	Enoyl-COA hydratase, ECHA12_1; structural genomics	97.91
3swx_A	265	Probable enoyl-COA hydratase/isomerase; structural	97.9
3h0u_A	289	Putative enoyl-COA hydratase; structural genomics,	97.9
3lao_A	258	Enoyl-COA hydratase/isomerase; alpha-beta sandwich	97.89
3t3w_A	279	Enoyl-COA hydratase; ssgcid, structural genomics,	97.87
3bpt_A	363	3-hydroxyisobutyryl-COA hydrolase; coenzyme A, bet	97.87
4hdt_A	353	3-hydroxyisobutyryl-COA hydrolase; ssgcid, carniti	97.85
4f47_A	278	Enoyl-COA hydratase ECHA19; ssgcid, seattle struct	97.84
2w3p_A	556	Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri	97.84
3trr_A	256	Probable enoyl-COA hydratase/isomerase; ssgcid, st	97.82
2j5g_A	263	ALR4455 protein; enzyme evolution, C-C bond hydrol	97.81
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	97.8
3qxi_A	265	Enoyl-COA hydratase ECHA1; structural genomics, se	97.77
3ju1_A	407	Enoyl-COA hydratase/isomerase family protein; alph	97.75
2bzr_A	548	Propionyl-COA carboxylase beta chain 5; fatty acid	97.75
3r9t_A	267	ECHA1_1; ssgcid, seattle structural genomics cente	97.74
3r9q_A	262	Enoyl-COA hydratase/isomerase; ssgcid, lyase,isome	97.74
1pix_A	587	Glutaconyl-COA decarboxylase A subunit; biotin-dep	97.73
3tlf_A	274	Enoyl-COA hydratase/isomerase; structural genomics	97.72
1vrg_A	527	Propionyl-COA carboxylase, beta subunit; TM0716, s	97.71
1on3_A	523	Methylmalonyl-COA carboxyltransferase 12S subunit;	97.66
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	97.56
2f9y_B	304	Acetyl-coenzyme A carboxylase carboxyl transferas	97.48
3n6r_B	531	Propionyl-COA carboxylase, beta subunit; protein c	97.32
3iav_A	530	Propionyl-COA carboxylase complex B subunit; accas	97.29
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	97.26
2np9_A	440	DPGC; protein inhibitor complex, oxidoreductase; H	97.15
3u9r_B	555	MCC beta, methylcrotonyl-COA carboxylase, beta-sub	97.07
3gf3_A	588	Glutaconyl-COA decarboxylase subunit A; sodium ION	97.05
1x0u_A	522	Hypothetical methylmalonyl-COA decarboxylase ALPH;	96.9
2f9i_B	285	Acetyl-coenzyme A carboxylase carboxyl transferase	96.7
2x24_A	793	Acetyl-COA carboxylase; fatty acid biosynthesis, l	96.28
3k8x_A	758	Acetyl-COA carboxylase; transferase, carboxyltrans	93.87
3n6r_B	531	Propionyl-COA carboxylase, beta subunit; protein c	90.19

>4gm2_A ATP-dependent CLP protease proteolytic subunit; structural genomics, structural genomics consortium, SGC, PR hydrolase; 2.80A {Plasmodium falciparum} PDB: 4hnk_A

Probab=100.00  E-value=8.4e-51  Score=323.55  Aligned_cols=153  Identities=35%  Similarity=0.513  Sum_probs=147.6

Q ss_pred             CCcCCCCCCCCeEEEEcCCCCC-CCCCCCCCCHHHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCC
Q 031001            1 MWLDFDNASKPIYLYINSSGTQ-NEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNS   79 (167)
Q Consensus         1 ~~L~~~~~~~~I~l~INS~G~~-~~~~~~~G~v~~g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s   79 (167)
                      |||+.++|.++|+|||||||++ +.+++.+|+|++|++|||+|+++++||+|+|.|+|+|||++|+++|++++|+++|||
T Consensus        50 l~L~~ed~~k~I~lyINSpG~~~~~~~~~~G~v~aglaIyd~m~~~~~~V~t~~~G~AaS~as~il~aG~~gkR~~lP~a  129 (205)
T 4gm2_A           50 LYLEYESKRKPIHLYINSTGDIDNNKIINLNGITDVISIVDVINYISSDVYTYCLGKAYGIACILASSGKKGYRFSLKNS  129 (205)
T ss_dssp             HHHHHHCTTCCEEEEEEECTTEETTEESCTTHHHHHHHHHHHHHHSSSCEEEEEEEEEETHHHHHHTTSCTTCEEECTTC
T ss_pred             HHHHhcCCCCCEEEEEeCCCCCCcCCCCCCCCHHHHHHHHHHHHhcCCCEEEEEEeeehhHHHHHHhcCCCCCEEecCCC
Confidence            5788999999999999999977 568999999999999999999999999999999999999999999999999999999


Q ss_pred             ceeeecccccCC-cCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCC
Q 031001           80 STKLYLPVVGRS-SGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDS  154 (167)
Q Consensus        80 ~~miH~p~~~~~-~G~~~dl~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~  154 (167)
                      ++|||||+ +++ .|+++|+++++++|.++++.+.++|+++||++.++|.++|+||+||+|+||++|||||+|+++
T Consensus       130 ~iMIHqP~-~~~~~G~a~di~i~a~el~~~~~~i~~iya~~TG~~~e~I~~~m~rd~~msa~EA~eyGlID~V~~~  204 (205)
T 4gm2_A          130 SFCLNQSY-SIIPFNQATNIEIQNKEIMNTKKKVIEIISKNTEKDTNVISNVLERDKYFNADEAVDFKLIDHILEK  204 (205)
T ss_dssp             EEEECCCC-CCCCSSCCSCHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHTTSCEEEEHHHHHHTTSCSEECCC
T ss_pred             EEEEecCc-ccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCcccCHHHHHHcCCccEeecC
Confidence            99999999 677 999999999999999999999999999999999999999999999999999999999999875

>3p2l_A ATP-dependent CLP protease proteolytic subunit; structural genomics, center for structural genomics of infec diseases, csgid; 2.29A {Francisella tularensis subsp} SCOP: c.14.1.1

Probab=100.00  E-value=2.9e-44  Score=285.39  Aligned_cols=149  Identities=36%  Similarity=0.544  Sum_probs=141.3

Q ss_pred             CcCCCCCCCCeEEEEcCCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCce
Q 031001            2 WLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSST   81 (167)
Q Consensus         2 ~L~~~~~~~~I~l~INS~G~~~~~~~~~G~v~~g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~   81 (167)
                      ||+.+++.++|.|+|||||         |+++++++||++|+.++.||+|+|.|.|+|+|++|+++|++++|++.|||++
T Consensus        53 ~l~~~~~~~~I~l~INSpG---------G~v~~~~~I~~~i~~~~~~v~t~~~G~AaS~g~~i~~ag~~g~r~~~p~a~i  123 (201)
T 3p2l_A           53 FLESEDPDKDIYFYINSPG---------GMVTAGMGVYDTMQFIKPDVSTICIGLAASMGSLLLAGGAKGKRYSLPSSQI  123 (201)
T ss_dssp             HHHHHCSSSCEEEEEEECC---------BCHHHHHHHHHHHHHSSSCEEEEEEEEEETHHHHHHHTSSTTCEEECTTCEE
T ss_pred             HHHhcCCCCCEEEEEECCC---------CCHHHHHHHHHHHHHhCCCeEEEEcCEehhHHHHHHHcCccCCEEEcCCCeE
Confidence            5667788899999999999         9999999999999999999999999999999999999999889999999999


Q ss_pred             eeecccccCCcCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCchHHHh
Q 031001           82 KLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDAAYE  160 (167)
Q Consensus        82 miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~~~~~~  160 (167)
                      |+|||+ ++..|+++|++++++++.++++.+.++|+++||++.+++.++|++++||||+||++|||||+|+++.+++++
T Consensus       124 miH~p~-~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~tG~~~e~i~~~~~~~~~lta~EA~e~GliD~I~~~~~~ll~  201 (201)
T 3p2l_A          124 MIHQPL-GGFRGQASDIEIHAKNILRIKDRLNKVLAHHTGQDLETIVKDTDRDNFMMADEAKAYGLIDHVIESREAIIK  201 (201)
T ss_dssp             EECCCE-EEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTSSCEEEEHHHHHHHTSCSEECCCSCC---
T ss_pred             EEeccc-cccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHhhcCeeecHHHHHHcCCccEecCCHHHhhC
Confidence            999998 778999999999999999999999999999999999999999999999999999999999999999888764

>3qwd_A ATP-dependent CLP protease proteolytic subunit; caseinolytic protease, serin-protease, hydrolase; 2.10A {Staphylococcus aureus subsp} SCOP: c.14.1.1 PDB: 3v5e_A 3v5i_A 3sta_V 3st9_A

Probab=100.00  E-value=3.1e-43  Score=279.82  Aligned_cols=146  Identities=35%  Similarity=0.546  Sum_probs=139.4

Q ss_pred             CcCCCCCCCCeEEEEcCCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCce
Q 031001            2 WLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSST   81 (167)
Q Consensus         2 ~L~~~~~~~~I~l~INS~G~~~~~~~~~G~v~~g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~   81 (167)
                      ||+.+++.++|.|+|||||         |++++|++||++|+.++.||+|+|.|.|+|+|++|+++|++++|++.|||++
T Consensus        50 ~l~~~~~~~~I~l~InSPG---------G~v~~~~~I~~~i~~~~~~V~t~~~G~AaSag~~i~~ag~~g~r~~~p~a~i  120 (203)
T 3qwd_A           50 FLQAQDSEKDIYLYINSPG---------GSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEV  120 (203)
T ss_dssp             HHHHHCSSSCEEEEEEECC---------BCHHHHHHHHHHHHHSSSCEEEEEEEEEETHHHHHHHTSCTTCEEECTTCEE
T ss_pred             HHHhcCCCCCEEEEEeCCC---------CCHHHHHHHHHHHHHhcCCcEEEEeeeehhHHHHHHHcCCcCeEEEcCCceE
Confidence            4666778899999999999         9999999999999999999999999999999999999999889999999999


Q ss_pred             eeecccccCCcCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCchH
Q 031001           82 KLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDA  157 (167)
Q Consensus        82 miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~~~  157 (167)
                      |+|||+ ++..|++.|++++++++.++++.+.++|+++||++.+++.++|++|+||||+||++|||||+|+++..+
T Consensus       121 miHqP~-~~~~G~a~di~~~a~~l~~~~~~~~~~~a~~tG~~~e~i~~~~~~d~~lta~EA~e~GliD~I~~~~~~  195 (203)
T 3qwd_A          121 MIHQPL-GGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVPETK  195 (203)
T ss_dssp             ECCCCS-SSTTTTSCHHHHHHHHHTTHHHHHHHHHHHHHCCCHHHHHHHHTSCCCEEHHHHHHHTSCSEECCCCC-
T ss_pred             EEeccc-ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhcCceecHHHHHHcCCcCEecCCccc
Confidence            999998 778999999999999999999999999999999999999999999999999999999999999988653

>1tg6_A Putative ATP-dependent CLP protease proteolytic S; mitochondrial CLPP, CLP/HSP 100, ATP-dependent protease, HYD; HET: FME; 2.10A {Homo sapiens} SCOP: c.14.1.1

Probab=100.00  E-value=3.3e-41  Score=278.81  Aligned_cols=150  Identities=31%  Similarity=0.459  Sum_probs=139.9

Q ss_pred             CcCCCCCCCCeEEEEcCCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCce
Q 031001            2 WLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSST   81 (167)
Q Consensus         2 ~L~~~~~~~~I~l~INS~G~~~~~~~~~G~v~~g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~   81 (167)
                      ||+.+++.++|.|+|||||         |++++|++|||+|++++.||+|+|.|+|||+|++|+++|++++|++.|||++
T Consensus       105 ~l~~ed~~k~I~L~INSPG---------GsV~ag~aIyd~I~~~k~pV~t~v~G~AASaG~~Ia~Agd~gkr~a~P~S~I  175 (277)
T 1tg6_A          105 FLQSESNKKPIHMYINSPG---------GVVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGTPGMRHSLPNSRI  175 (277)
T ss_dssp             HHHHHCSSSCEEEEEEECC---------BCHHHHHHHHHHHHHSCSCEEEEEEEEEETHHHHHHHTSCTTCEEECTTCEE
T ss_pred             HHHhcCCCCCEEEEEECCC---------CCHHHHHHHHHHHHhcCCCEEEEEccEeHHHHHHHHHCCCcCCEEEecCCEE
Confidence            4566778899999999999         9999999999999999999999999999999999999999989999999999


Q ss_pred             eeecccccCCcCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCchHHHhh
Q 031001           82 KLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDAAYEK  161 (167)
Q Consensus        82 miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~~~~~~~  161 (167)
                      |+|+|+ ++..|++.|+.+.++++.++++.+.++|+++||++.+++++++++|+|||++||++|||||+|++..+++++.
T Consensus       176 mihqP~-~g~~G~a~Di~~~a~ei~~~~~~~~~i~a~~tG~~~e~i~~~~drd~~lta~EAle~GLID~I~~~~~~~~~~  254 (277)
T 1tg6_A          176 MIHQPS-GGARGQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAMERDRYMSPMEAQEFGILDKVLVHPPQDGED  254 (277)
T ss_dssp             EECCCC-CCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHSSCEEECHHHHHHHTSCSEECSSCC-----
T ss_pred             EEeccc-ccccCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcccCHHHHHHCCCCCEecCcchhhccc
Confidence            999998 7788999999999999999999999999999999999999999999999999999999999999988777654

>1yg6_A ATP-dependent CLP protease proteolytic subunit; endopeptidase CLP, caseinolytic protease, protease TI, heat shock protein F21.5, hydrolase; 1.90A {Escherichia coli} SCOP: c.14.1.1 PDB: 1tyf_A 2fzs_A* 3mt6_R 1yg8_A 3hln_A 2zl2_A 2zl0_A 2zl4_A 2zl3_A 3tt7_A* 3tt6_A 3ktg_A 3kth_A 3kti_A* 3ktj_A* 3ktk_A* 3q7h_A

Probab=100.00  E-value=2.1e-39  Score=255.42  Aligned_cols=144  Identities=38%  Similarity=0.575  Sum_probs=136.6

Q ss_pred             CcCCCCCCCCeEEEEcCCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCce
Q 031001            2 WLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSST   81 (167)
Q Consensus         2 ~L~~~~~~~~I~l~INS~G~~~~~~~~~G~v~~g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~   81 (167)
                      +|+.+++.++|.|+|||||         |++.++++||++|+.++.||+|+|.|+|+|+|++|+++|++++|++.|+|++
T Consensus        49 ~l~~~~~~~~I~l~InSPG---------G~v~a~~~I~~~i~~~~~pV~~~v~g~AaS~g~~Ia~ag~~~~r~a~p~s~i  119 (193)
T 1yg6_A           49 FLEAENPEKDIYLYINSPG---------GVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRV  119 (193)
T ss_dssp             HHHHHCSSSCEEEEEEECC---------BCHHHHHHHHHHHHHSSSCEEEEEEEEEETHHHHHHHTSCTTCEEECTTCEE
T ss_pred             HHHhcCCCCCEEEEEECcC---------CCHHHHHHHHHHHHhcCCCEEEEEeeeHHHHHHHHHHCCCcCcEEEecCcEE
Confidence            3455677899999999999         9999999999999999999999999999999999999999888999999999


Q ss_pred             eeecccccCCcCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001           82 KLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ  155 (167)
Q Consensus        82 miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~  155 (167)
                      |+|+|+ ++..|+++|+...++++.+.++.+.+.|+++||++++++++++++++|||++||+++||||+|+++.
T Consensus       120 ~ih~p~-~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~~g~~~~~i~~~~~~~~~~ta~eA~~~GliD~i~~~~  192 (193)
T 1yg6_A          120 MIHQPL-GGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSILTHR  192 (193)
T ss_dssp             EECCCE-EEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTSSCEEEEHHHHHHHTSSSEECCCC
T ss_pred             EEEecc-ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCeEEcHHHHHHcCCCCEecCCC
Confidence            999998 6678999999999999999999999999999999999999999999999999999999999998764

>2f6i_A ATP-dependent CLP protease, putative; structural genomics, structural genomics conso SGC, hydrolase; 2.45A {Plasmodium falciparum} SCOP: c.14.1.1

Probab=100.00  E-value=1.2e-39  Score=261.22  Aligned_cols=145  Identities=32%  Similarity=0.470  Sum_probs=130.0

Q ss_pred             CcCCCCCCCCeEEEEcCCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCce
Q 031001            2 WLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSST   81 (167)
Q Consensus         2 ~L~~~~~~~~I~l~INS~G~~~~~~~~~G~v~~g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~   81 (167)
                      +|+.+++ ++|.|+|||||         |+++++++||++|+.++.||+|+|.|+|||+|++|+++|++++|++.|+|++
T Consensus        62 ~l~~~~~-k~I~l~INSPG---------Gsv~a~~~I~~~i~~~~~pV~t~v~g~AAS~g~~Ia~agd~g~i~a~p~s~i  131 (215)
T 2f6i_A           62 YLDNINH-NDIKIYINSPG---------GSINEGLAILDIFNYIKSDIQTISFGLVASMASVILASGKKGKRKSLPNCRI  131 (215)
T ss_dssp             HHHHHCC-SCEEEEEEECC---------BCHHHHHHHHHHHHHSSSCEEEEEEEEECHHHHHHHHTSCTTCEEECTTCEE
T ss_pred             HHHhCCC-CcEEEEEECCC---------CCHHHHHHHHHHHHhcCCCEEEEEeeEhHhHHHHHHHcCCcccEEEcCCCEE
Confidence            4556677 99999999999         9999999999999999999999999999999999999999888999999999


Q ss_pred             eeecccccCCcCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCchH
Q 031001           82 KLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDA  157 (167)
Q Consensus        82 miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~~~  157 (167)
                      |+|+|+ +...|++.|+...++++.++++.+.++|+++||++++++++++++++|||++||+++||||+|+++..+
T Consensus       132 ~ih~p~-~~~~G~~~di~~~~~el~~~~~~i~~~ya~~~g~~~e~i~~~~~~~~~lta~eA~e~GLiD~I~~~~~~  206 (215)
T 2f6i_A          132 MIHQPL-GNAFGHPQDIEIQTKEILYLKKLLYHYLSSFTNQTVETIEKDSDRDYYMNALEAKQYGIIDEVIETKLP  206 (215)
T ss_dssp             ESSCTT-CSCC--------CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHTTCEECHHHHHHHTSCSEECCCSSC
T ss_pred             EEeccc-cccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHhCCeecCHHHHHHCCCCCEecCCccc
Confidence            999998 677899999999999999999999999999999999999999999999999999999999999987654

>2cby_A ATP-dependent CLP protease proteolytic subunit 1; serine protease, endopept mycobacterium tuberculosis, ATP-dependent protease; 2.6A {Mycobacterium tuberculosis} SCOP: c.14.1.1 PDB: 2c8t_A 2ce3_A

Probab=100.00  E-value=9e-39  Score=254.61  Aligned_cols=150  Identities=33%  Similarity=0.484  Sum_probs=128.4

Q ss_pred             cCCCCCCCCeEEEEcCCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCcee
Q 031001            3 LDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTK   82 (167)
Q Consensus         3 L~~~~~~~~I~l~INS~G~~~~~~~~~G~v~~g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~m   82 (167)
                      ++.+++.++|.|+|||||         |++.++++||++|+.++.||+|+|.|.|+|+|++|+++|++++|++.|+|++|
T Consensus        51 ~~~~~~~k~I~l~InSPG---------G~v~a~~~I~~~i~~~~~pV~~~v~g~AaS~g~~Ia~agd~~~~~a~p~a~ig  121 (208)
T 2cby_A           51 LAAEDASKDISLYINSPG---------GSISAGMAIYDTMVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARIL  121 (208)
T ss_dssp             HHHHCSSSCEEEEEEECC---------BCHHHHHHHHHHHHHCSSCEEEEEEEEEETHHHHHHHTSCTTCEEECTTCEEE
T ss_pred             HHhCCCCCCEEEEEECCC---------CCHHHHHHHHHHHHhcCCCEEEEECcEeHHHHHHHHhCCCcCCEEEcCCcEEE
Confidence            455567899999999999         99999999999999999999999999999999999999988889999999999


Q ss_pred             eecccccCCcCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCchHHHhhh
Q 031001           83 LYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDAAYEKR  162 (167)
Q Consensus        83 iH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~~~~~~~~  162 (167)
                      +|+|+ ++..|+++|+...++++.++++.+.+.|++++|++.+++.+++.+++|||++||+++||||+|++...+++++.
T Consensus       122 ih~p~-~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~~g~~~~~i~~~~~~~~~~ta~eA~e~GLvD~i~~~~~~ll~~~  200 (208)
T 2cby_A          122 MHQPL-GGVTGSAADIAIQAEQFAVIKKEMFRLNAEFTGQPIERIEADSDRDRWFTAAEALEYGFVDHIITRAHVNGEAQ  200 (208)
T ss_dssp             CCCC-----------CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHTTCEEEHHHHHHHTSCSEECSCC-------
T ss_pred             Eeccc-ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHhCCcEEcHHHHHHcCCCcEecCchHHHHHHH
Confidence            99998 67789999999999999999999999999999999999999999999999999999999999999999888753

>1y7o_A ATP-dependent CLP protease proteolytic subunit; hydrolase; 2.51A {Streptococcus pneumoniae} SCOP: c.14.1.1

Probab=100.00  E-value=2.3e-37  Score=248.17  Aligned_cols=145  Identities=32%  Similarity=0.556  Sum_probs=126.8

Q ss_pred             CcCCCCCCCCeEEEEcCCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCce
Q 031001            2 WLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSST   81 (167)
Q Consensus         2 ~L~~~~~~~~I~l~INS~G~~~~~~~~~G~v~~g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~   81 (167)
                      +|+.+++.++|.|+|||||         |++.++++||++|+.++.||+|+|.|.|+|+|++|+++|++++|++.|+|++
T Consensus        68 ~l~~~~~~k~I~l~InSPG---------G~v~ag~~I~~~i~~~~~pV~t~v~G~AaS~G~~Ia~a~d~g~r~a~p~a~i  138 (218)
T 1y7o_A           68 FLDAQDSTKDIYLYVNTPG---------GSVSAGLAIVDTMNFIKADVQTIVMGMAASMGTVIASSGAKGKRFMLPNAEY  138 (218)
T ss_dssp             HHHHHCTTSCEEEEEEECC---------BCHHHHHHHHHHHHHSSSCEEEEEEEEEETHHHHHHTTSCTTCEEECTTCEE
T ss_pred             HHHhcCCCCCEEEEEECcC---------CCHHHHHHHHHHHHhcCCCEEEEEccEeHHHHHHHHHcCCcCcEEEcCCcEE
Confidence            4566677899999999999         9999999999999999999999999999999999999999888999999999


Q ss_pred             eeecccccCC--cCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCch
Q 031001           82 KLYLPVVGRS--SGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQD  156 (167)
Q Consensus        82 miH~p~~~~~--~G~~~dl~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~~  156 (167)
                      |+|+|+ ++.  .|+++|+...+++++++++.+.+.|++++|++.+++.+++++++||||+||+++||||+|+++.+
T Consensus       139 gih~p~-~g~~~~G~~~di~~~~~~i~~~~~~~~~~~a~~~G~~~~~i~~~~~~~~~~ta~EA~e~GLVD~v~~~~~  214 (218)
T 1y7o_A          139 MIHQPM-GGTGGGTQQTDMAIAPEHLLKTRNTLEKILAENSGQSMEKVHADAERDNWMSAQETLEYGFIDEIMANNS  214 (218)
T ss_dssp             ECCCCC---------------CHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHSCCCBCHHHHHHHTSCSEECCCC-
T ss_pred             EEeccc-ccccCcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCCCEEcHHHHHHCCCCcEEcCcCC
Confidence            999998 666  89999999999999999999999999999999999999999999999999999999999998754

>3viv_A 441AA long hypothetical NFED protein; protein-peptide complex, alpha / beta motif, protease, membr protein stomatin, hydrolase-protein binding complex; 2.25A {Pyrococcus horikoshii} PDB: 3bpp_A 2deo_A

Probab=99.96  E-value=1.1e-28  Score=199.41  Aligned_cols=146  Identities=15%  Similarity=0.210  Sum_probs=126.0

Q ss_pred             CCCCCeEEEEcCCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCeEEEE---ccccccHHHHHHhcCCCCceeeecCCceee
Q 031001            7 NASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVN---CGMAYGQAAMLLSVGAKGYRGLQPNSSTKL   83 (167)
Q Consensus         7 ~~~~~I~l~INS~G~~~~~~~~~G~v~~g~aI~~~i~~~~~~V~t~~---~G~aaS~a~~i~~ag~~~~R~~~p~s~~mi   83 (167)
                      ++.+.|.|+|||||         |++.++.+||+.|+.++.||.++|   .|.|+|+|++|+++|+  +|++.|+++|++
T Consensus        37 ~~~~~Ivl~inspG---------G~v~~~~~i~~~i~~~~~PVia~v~p~~G~AasaG~~ia~a~d--~~~a~p~a~ig~  105 (230)
T 3viv_A           37 DNAEAIIIELDTPG---------GRADAMMNIVQRIQQSKIPVIIYVYPPGASAASAGTYIALGSH--LIAMAPGTSIGA  105 (230)
T ss_dssp             TTCSEEEEEEEBSC---------EEHHHHHHHHHHHHTCSSCEEEEECSTTCEEETHHHHHHHTSS--EEEECTTCEEEC
T ss_pred             CCCCEEEEEEeCCC---------cCHHHHHHHHHHHHhCCCCEEEEEecCCCEEhHHHHHHHHhcC--ceeECCCCEEEe
Confidence            34789999999999         999999999999999999999999   9999999999999995  799999999999


Q ss_pred             ecccc-cCCcCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCchHHHhhh
Q 031001           84 YLPVV-GRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDAAYEKR  162 (167)
Q Consensus        84 H~p~~-~~~~G~~~dl~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~~~~~~~~  162 (167)
                      |+|.. .+..|+..++.  .+.+..++ .+.+.|++++|++.+.+++++.+++||||+||+++||||+|.++.++++++.
T Consensus       106 ~~p~~~~~~~G~~~~~~--~k~~~~~~-~~~~~la~~~Gr~~~~a~~~~~~~~~ltA~EAle~GliD~V~~~~~~ll~~~  182 (230)
T 3viv_A          106 CRPILGYSQNGSIIEAP--PAITNYFI-AYIKSLAQESGRNATIAEEFITKDLSLTPEEALKYGVIEVVARDINELLKKS  182 (230)
T ss_dssp             CCEEEEECTTSCEEECC--HHHHHHHH-HHHHHHHHHTTCCHHHHHHHHHTCCEECHHHHHHTTSCSEECSSHHHHHHHH
T ss_pred             ccceecCCCCCCchHHH--HHHHHHHH-HHHHHHHHHhCcCHHHHHHHHhcCCeecHHHHHHcCCceEecCCHHHHHHHh
Confidence            99983 13456643221  22333334 3447899999999999999999999999999999999999999999999998


Q ss_pred             cccC
Q 031001          163 VMIT  166 (167)
Q Consensus       163 ~~~~  166 (167)
                      +|.+
T Consensus       183 ~g~~  186 (230)
T 3viv_A          183 NGMK  186 (230)
T ss_dssp             TTCB
T ss_pred             cCCE
Confidence            8754

>3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A

Probab=99.81  E-value=1.2e-19  Score=163.39  Aligned_cols=138  Identities=18%  Similarity=0.121  Sum_probs=112.0

Q ss_pred             CCCCCCeEEEEcCCCCCCCCCCCCCCHHHHHHHHHHHhhcC---CCeEEEEccccccHHHHHHhcCCCCceeeecCCcee
Q 031001            6 DNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCK---SKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTK   82 (167)
Q Consensus         6 ~~~~~~I~l~INS~G~~~~~~~~~G~v~~g~aI~~~i~~~~---~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~m   82 (167)
                      +++.+.|.|+|||||+        |++.++.+|+++|+.++   .||++++. .++|++++|++++  +++++.|++.+|
T Consensus        85 d~~ik~I~L~inspGg--------G~v~~~~~I~~~i~~~k~~gkpvva~~~-~aas~~y~lAsaa--d~i~~~P~~~vg  153 (593)
T 3bf0_A           85 DRNITGIVMDLKNFAG--------GDQPSMQYIGKALKEFRDSGKPVYAVGE-NYSQGQYYLASFA--NKIWLSPQGVVD  153 (593)
T ss_dssp             CTTCCCEEEECTEEEE--------CCHHHHHHHHHHHHHHHHTTCCEEEEES-CEEHHHHHHHTTS--SEEEECTTCCEE
T ss_pred             CCCceEEEEEeCCCCC--------CcHHHHHHHHHHHHHHHhcCCeEEEEEc-cchhHHHHHHHhC--CEEEECCCceEE
Confidence            4556899999999983        69999999999999885   78888865 4788888888887  689999999999


Q ss_pred             eecccccC--C---------------cCChh--------------HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhh
Q 031001           83 LYLPVVGR--S---------------SGPVT--------------DMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDI  131 (167)
Q Consensus        83 iH~p~~~~--~---------------~G~~~--------------dl~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~  131 (167)
                      +|+|....  +               .|+.+              +-+...+.|+.+.+.+.+.+++++|++.+++.+++
T Consensus       154 ~~g~~~~~~~~~~~l~klGi~~~~~~~G~~K~a~ep~~r~~ms~~~re~~~~~l~~~~~~~~~~va~~Rg~~~e~l~~~~  233 (593)
T 3bf0_A          154 LHGFATNGLYYKSLLDKLKVSTHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAEQVFPGA  233 (593)
T ss_dssp             CCCCBCCEEECHHHHHHTTCEEEEEEECTTCGGGHHHHCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHCCHH
T ss_pred             EecccccccCHHHHHHHcCCeEEEEEeecccCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            99997321  0               12211              11223356677778888889999999999999999


Q ss_pred             CC-------CccccHHHHHHcCcceEEeCC
Q 031001          132 QR-------PKYMQAKEAIVYGLADKIIDS  154 (167)
Q Consensus       132 ~~-------~~~lsa~EA~e~GliD~I~~~  154 (167)
                      ++       ++||+++||+++||||+|...
T Consensus       234 d~~~~~l~~~~~~ta~~A~~~GLvD~i~~~  263 (593)
T 3bf0_A          234 QGLLEGLTKTGGDTAKYALENKLVDALASS  263 (593)
T ss_dssp             HHHHHHHHTTTTCHHHHHHHTTSSSEECCH
T ss_pred             hhhhhhhhhcCCccHHHHHHCCCCCCCCCH
Confidence            88       999999999999999999843

>3rst_A Signal peptide peptidase SPPA; alpha/beta protein fold, signal peptide digestion, bacterial membrane, hydrolase; 2.37A {Bacillus subtilis}

Probab=99.68  E-value=4e-16  Score=125.97  Aligned_cols=135  Identities=20%  Similarity=0.227  Sum_probs=108.9

Q ss_pred             CCCCeEEEEcCCCCCCCCCCCCCCHHHHHHHHHHHhh----cCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceee
Q 031001            8 ASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAY----CKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKL   83 (167)
Q Consensus         8 ~~~~I~l~INS~G~~~~~~~~~G~v~~g~aI~~~i~~----~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~mi   83 (167)
                      ..+.|.|.+||||         |++..+..|++.|+.    ++.||.+.+.|.|+|+|+.|+++|  +.|++.|++.+++
T Consensus        46 ~v~~ivL~~~s~G---------g~~~~~~~i~~~l~~~~~~~~kPVia~v~g~a~~gG~~lA~a~--D~i~a~~~a~~g~  114 (240)
T 3rst_A           46 TVKGIVLKVNSPG---------GGVYESAEIHKKLEEIKKETKKPIYVSMGSMAASGGYYISTAA--DKIFATPETLTGS  114 (240)
T ss_dssp             TEEEEEEEEEECC---------BCHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEETHHHHHHTTS--SEEEECTTCEEEC
T ss_pred             CcEEEEEEecCCC---------CCHHHHHHHHHHHHHHHHhCCCeEEEEECCeehHhHHHHHHhC--CeeEECCCCeEec
Confidence            3467999999999         999999999999887    578999999999999999999999  5799999999888


Q ss_pred             ecccc-----------------cCCcC------------ChhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhCCC
Q 031001           84 YLPVV-----------------GRSSG------------PVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRP  134 (167)
Q Consensus        84 H~p~~-----------------~~~~G------------~~~dl~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~  134 (167)
                      +-...                 ....|            +..+-+...+.++.+.+.+.+.+++..+++.+++.++++..
T Consensus       115 ~Gv~~~~~~~~~~l~k~Gi~~~~~~~G~~k~~~~p~~~~s~~~~~~~~~~l~~~~~~f~~~Va~~R~l~~~~~~~~~~g~  194 (240)
T 3rst_A          115 LGVIMESVNYSKLADKLGISFETIKSGAHADIMSPSREMTKEEKNIMQSMVDNSYEGFVDVISKGRGMPKAEVKKIADGR  194 (240)
T ss_dssp             CCCEEEEEECHHHHHHHTCEEEEEESSTTTTTTCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHCSSC
T ss_pred             cceeeEecCHHHHHHHcCCeEEEEeccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHhcCC
Confidence            72210                 00011            12233334457788888999999999999999999977765


Q ss_pred             ccccHHHHHHcCcceEEeCC
Q 031001          135 KYMQAKEAIVYGLADKIIDS  154 (167)
Q Consensus       135 ~~lsa~EA~e~GliD~I~~~  154 (167)
                       .++++||+++||||+|...
T Consensus       195 -~~~a~~A~~~GLVD~i~~~  213 (240)
T 3rst_A          195 -VYDGRQAKKLNLVDELGFY  213 (240)
T ss_dssp             -EEEHHHHHHTTSSSEECCH
T ss_pred             -cccHHHHHHcCCCcccCCH
Confidence             5699999999999999863

>3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A

Probab=99.61  E-value=3.2e-15  Score=134.54  Aligned_cols=140  Identities=24%  Similarity=0.243  Sum_probs=108.0

Q ss_pred             CCCCeEEEEcCCCCCCCCCCCCCCHHHHHHHHHHHhh---cCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeee
Q 031001            8 ASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAY---CKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLY   84 (167)
Q Consensus         8 ~~~~I~l~INS~G~~~~~~~~~G~v~~g~aI~~~i~~---~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH   84 (167)
                      ..+.|.|.+||||         |++.++..|++.++.   .+.||++.+.|.|+|+|++|+++|  +.|++.|++.++..
T Consensus       339 ~vkaVVL~i~spG---------G~~~~~~~i~~~i~~l~~~~kPVia~v~g~AasgG~~iA~aa--D~iva~p~a~~Gsi  407 (593)
T 3bf0_A          339 KVKAIVLRVNSPG---------GSVTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPA--NYIVANPSTLTGSI  407 (593)
T ss_dssp             TEEEEEEEEEEEE---------ECHHHHHHHHHHHHHHHHTTCCEEEEEEEEEETHHHHTTTTC--SEEEECTTCEEECC
T ss_pred             CCCEEEEEecCCC---------CCHHHHHHHHHHHHHHHhCCCCEEEEECCChHHHHHHHHHhC--CEEEECCCCEeecc
Confidence            4578999999999         999999888887765   568999999999999999999999  58999999988654


Q ss_pred             ccc------------ccC-----CcC-----------ChhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhCCCcc
Q 031001           85 LPV------------VGR-----SSG-----------PVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKY  136 (167)
Q Consensus        85 ~p~------------~~~-----~~G-----------~~~dl~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~  136 (167)
                      .+.            ++-     ..|           +..+.+...+.++.....+.+.+++..|++.+.++.++... .
T Consensus       408 gv~~~~~~~~~~~~klGi~~~~~~~g~~k~~~~~~~~t~~~~~~l~~~l~~~~~~f~~~V~~~Rg~~~~a~~~l~~G~-~  486 (593)
T 3bf0_A          408 GIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRALPPEAQLMMQLSIENGYKRFITLVADARHSTPEQIDKIAQGH-V  486 (593)
T ss_dssp             CEEEEEEECHHHHHHTTCEEECCBSCGGGCCCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHTTCTTC-E
T ss_pred             eeEEecCchHHHHHhcCceeeeeecccccccCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCC-C
Confidence            321            110     111           22233334456666677888999999999999988777654 5


Q ss_pred             ccHHHHHHcCcceEEeCCchHHHh
Q 031001          137 MQAKEAIVYGLADKIIDSQDAAYE  160 (167)
Q Consensus       137 lsa~EA~e~GliD~I~~~~~~~~~  160 (167)
                      ++++||+++||||+|. +.+++++
T Consensus       487 ~ta~eA~~~GLVD~v~-~~~~~~~  509 (593)
T 3bf0_A          487 WTGQDAKANGLVDSLG-DFDDAVA  509 (593)
T ss_dssp             EEHHHHHHHTSCSEEC-CHHHHHH
T ss_pred             cCHHHHHHCCCCcCcc-CHHHHHH
Confidence            6999999999999998 4444444

>2f9i_A Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}

Probab=98.49  E-value=3.7e-07  Score=76.73  Aligned_cols=116  Identities=21%  Similarity=0.254  Sum_probs=79.9

Q ss_pred             CCCeEEEEcCCCCCCCC-CCCCCCHHHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeeccc
Q 031001            9 SKPIYLYINSSGTQNEK-KESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPV   87 (167)
Q Consensus         9 ~~~I~l~INS~G~~~~~-~~~~G~v~~g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~   87 (167)
                      .-||...+||||.-.+. .|..|....+..+...+...+.|+.+++.|.|.|.|+.++++|  +.+++.|++.|.+-.|.
T Consensus       160 ~~PlI~lvdt~Ga~~g~~ae~~g~~~~~a~~l~al~~~~vPvIavV~G~a~GGGa~~~~~~--D~via~~~A~~~v~~pe  237 (327)
T 2f9i_A          160 NRPIFTFIDTKGAYPGKAAEERGQSESIATNLIEMASLKVPVIAIVIGEGGSGGALGIGIA--NKVLMLENSTYSVISPE  237 (327)
T ss_dssp             TCCEEEEEEESCSCCCHHHHHTTHHHHHHHHHHHHHTCSSCEEEEEEEEEBHHHHHTTCCC--SEEEEETTCBCBSSCHH
T ss_pred             CCCEEEEEeCCCCCcchhhhhhhhHHHHHHHHHHHHhCCCCEEEEEECCcChHHHHHHHCC--CEEEEcCCceEeecCch
Confidence            46999999999954332 1333555555667788899999999999999999999988887  57999999998764332


Q ss_pred             ccCCcCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCC
Q 031001           88 VGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDS  154 (167)
Q Consensus        88 ~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~  154 (167)
                       +    -+.-+   .......                .+..+.    ..++|++|++.|+||+|++.
T Consensus       238 -g----~a~il---~~~~~~a----------------~~A~e~----~~itA~~a~~~GlVd~VV~e  276 (327)
T 2f9i_A          238 -G----AAALL---WKDSNLA----------------KIAAET----MKITAHDIKQLGIIDDVISE  276 (327)
T ss_dssp             -H----HHHHH---SSCGGGH----------------HHHHHH----HTCBHHHHHHTTSSSEEECC
T ss_pred             -H----HHHHH---HHHhcch----------------HHHHHH----cCCCHHHHHHcCCceEEecC
Confidence             1    00000   0000000                000111    56999999999999999984

>3lke_A Enoyl-COA hydratase; nysgrc, target 112 structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus halodurans}

Probab=98.47  E-value=6.7e-07  Score=72.56  Aligned_cols=102  Identities=15%  Similarity=0.098  Sum_probs=72.1

Q ss_pred             HHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCc--CChhHHHHHHHHHHHHHHHHH
Q 031001           36 YAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSS--GPVTDMWRKAKDLEANAESYI  113 (167)
Q Consensus        36 ~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~--G~~~dl~~~~~~l~~~~~~~~  113 (167)
                      ..++..|..++.||.+.+.|.|.+.|.-++++|  +-|++.++++|.+-...++..-  |...-+       -       
T Consensus        91 ~~~~~~l~~~~kPvIAav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~Gl~p~~g~~~~L-------~-------  154 (263)
T 3lke_A           91 NHCVLEIFTSPKVTVALINGYAYGGGFNMMLAC--DRRIALRRAKFLENFHKMGISPDLGASYFL-------P-------  154 (263)
T ss_dssp             HHHHHHHHTCSSEEEEEECSEEETHHHHGGGGS--SEEEEETTCEEECCHHHHTCCCCTTHHHHH-------H-------
T ss_pred             HHHHHHHHhCCCCEEEEECCEeeHHHHHHHHHC--CEEEEcCCCEEeCchHhhCCCCCccHHHHH-------H-------
Confidence            346778889999999999999999999999999  5799999998876443322221  111111       1       


Q ss_pred             HHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCchHHH
Q 031001          114 ELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDAAY  159 (167)
Q Consensus       114 ~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~~~~~  159 (167)
                          +..  ....-.+++-....++|+||+++||||+|+++.+++.
T Consensus       155 ----~~v--G~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~~l~  194 (263)
T 3lke_A          155 ----RII--GYEQTMNLLLEGKLFTSEEALRLGLIQEICENKQELQ  194 (263)
T ss_dssp             ----HHH--CHHHHHHHHHHCCCEEHHHHHHHTSSSEEESSHHHHH
T ss_pred             ----HHh--CHHHHHHHHHhCCCcCHHHHHHcCCCcEecCChhHHH
Confidence                111  2233345555677899999999999999997455444

>2f9y_A Acetyl-COA carboxylase, carboxyltransferase alpha; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4

Probab=98.46  E-value=2.9e-07  Score=77.75  Aligned_cols=116  Identities=18%  Similarity=0.133  Sum_probs=79.7

Q ss_pred             CCCeEEEEcCCCCCCCC-CCCCCCHHHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeeccc
Q 031001            9 SKPIYLYINSSGTQNEK-KESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPV   87 (167)
Q Consensus         9 ~~~I~l~INS~G~~~~~-~~~~G~v~~g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~   87 (167)
                      .-||...+||||.-.+. .|..|....+..+...+...+.|+.+++.|.|.|.|+.++++|  +.+++.|++.+.+-.|.
T Consensus       174 ~lPlI~lvDt~Ga~~g~~aE~~g~~~~~a~~l~al~~~~vPvIavV~G~a~GGGa~~~~~~--D~via~p~A~~~v~~Pe  251 (339)
T 2f9y_A          174 KMPIITFIDTPGAYPGVGAEERGQSEAIARNLREMSRLGVPVVCTVIGEGGSGGALAIGVG--DKVNMLQYSTYSVISPE  251 (339)
T ss_dssp             TCCEEEEEEESCSCCSHHHHHTTHHHHHHHHHHHHHTCSSCEEEEEEEEEEHHHHHTTCCC--SEEEECTTCEEESSCHH
T ss_pred             CCCEEEEEeCCCCccchHHHHHHHHHHHHHHHHHHHhCCCCEEEEEeCCcCcHHHHHHhcc--CeeeecCCCEEEeeccc
Confidence            46999999999944331 1333555556677888899999999999999999999988887  57999999998763332


Q ss_pred             ccCCcCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCC
Q 031001           88 VGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDS  154 (167)
Q Consensus        88 ~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~  154 (167)
                       +.    ++-   .......                ..+..++    ..++|++|+++|+||+|++.
T Consensus       252 -g~----asi---l~~~~~~----------------~~~Aae~----~~itA~~a~~~GlVd~VV~e  290 (339)
T 2f9y_A          252 -GC----ASI---LWKSADK----------------APLAAEA----MGIIRPRLKELKLIDSIIPE  290 (339)
T ss_dssp             -HH----HHH---HSSCSTT----------------HHHHHHH----HTCSHHHHHTTTSCSCCCCC
T ss_pred             -hH----HHH---HHHhhcc----------------HHHHHHH----cCCCHHHHHHcCCeeEEecC
Confidence             10    000   0000000                0111122    56999999999999999984

>2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics, NPPSFA, nationa on protein structural and functional analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A

Probab=98.46  E-value=2.4e-06  Score=68.96  Aligned_cols=96  Identities=19%  Similarity=0.151  Sum_probs=69.8

Q ss_pred             HHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCc--CChhHHHHHHHHHHHHHHHHHH
Q 031001           37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSS--GPVTDMWRKAKDLEANAESYIE  114 (167)
Q Consensus        37 aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~--G~~~dl~~~~~~l~~~~~~~~~  114 (167)
                      .++..|..++.||.+.+.|.|.+.|.-++++|  +-|++.++++|.+-...++..-  |...-                 
T Consensus        86 ~~~~~l~~~~kPvIAav~G~a~GgG~~lalac--D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~-----------------  146 (258)
T 2pbp_A           86 ADWDRLSIVKTPMIAAVNGLALGGGFELALSC--DLIVASSAAEFGFPEVNLGVMPGAGGTQR-----------------  146 (258)
T ss_dssp             HHHHHHHTCCSCEEEEECSEEETHHHHHHHTS--SEEEEETTCEEECGGGGGTCCCCSSHHHH-----------------
T ss_pred             HHHHHHHhCCCCEEEEEcCEEEhHHHHHHHhC--CEEEEcCCCEEECcccccCCCCcccHHHH-----------------
Confidence            45778889999999999999999999999999  5799999998877554433221  11111                 


Q ss_pred             HHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCC
Q 031001          115 LLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDS  154 (167)
Q Consensus       115 ~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~  154 (167)
                       +.+..|  .....+++-....++|+||+++||||+|+++
T Consensus       147 -l~~~vG--~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~  183 (258)
T 2pbp_A          147 -LTKLIG--PKRALEWLWTGARMSAKEAEQLGIVNRVVSP  183 (258)
T ss_dssp             -HHHHHC--HHHHHHHHHHCCCEEHHHHHHTTSCSEEECG
T ss_pred             -HHHHhC--HHHHHHHHHcCCccCHHHHHHcCCcceeeCh
Confidence             111122  2333445555778899999999999999865

>1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding protein,enoyl-COA hydratase, riken structural genomics/proteomics initiative, RSGI; 2.20A {Homo sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A

Probab=98.42  E-value=1.9e-06  Score=70.25  Aligned_cols=101  Identities=17%  Similarity=0.155  Sum_probs=71.9

Q ss_pred             HHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHH
Q 031001           36 YAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIEL  115 (167)
Q Consensus        36 ~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~  115 (167)
                      ..++..|..++.||.+.+.|.|.+.|.-++++|  +-|++.++++|.+-...++..-+-.. ..    .           
T Consensus        95 ~~~~~~l~~~~kPvIAav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~Gl~p~~g~-~~----~-----------  156 (272)
T 1hzd_A           95 RAVINDIANLPVPTIAAIDGLALGGGLELALAC--DIRVAASSAKMGLVETKLAIIPGGGG-TQ----R-----------  156 (272)
T ss_dssp             HHHHHHHHTCSSCEEEEESEEEETHHHHHHHHS--SEEEEETTCEEECCGGGGTCCCCSSH-HH----H-----------
T ss_pred             HHHHHHHHhCCCCEEEEeCceEEecHHHHHHhC--CEEEEcCCCEEeCchhccCCCCCchH-HH----H-----------
Confidence            456778889999999999999999999999999  57999999998875554332211110 00    0           


Q ss_pred             HHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCch
Q 031001          116 LAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQD  156 (167)
Q Consensus       116 ~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~~  156 (167)
                      +.+..|  ...-.+++-....++|+||+++||||+|.++.+
T Consensus       157 l~r~vG--~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~  195 (272)
T 1hzd_A          157 LPRAIG--MSLAKELIFSARVLDGKEAKAVGLISHVLEQNQ  195 (272)
T ss_dssp             HHHHHC--HHHHHHHHHHTCEEEHHHHHHHTSCSEEECCCT
T ss_pred             HHHHhC--HHHHHHHHHcCCcCCHHHHHHCCCcceecChhh
Confidence            111122  223345555677889999999999999997653

>1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2vre_A

Probab=98.42  E-value=1.1e-06  Score=71.50  Aligned_cols=104  Identities=18%  Similarity=0.194  Sum_probs=72.7

Q ss_pred             HHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHH
Q 031001           37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELL  116 (167)
Q Consensus        37 aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~  116 (167)
                      .++..|..++.||.+.+.|.|.+.|+-++++|  +-|++.++++|.+-...++..-+-. -               ...+
T Consensus        98 ~~~~~l~~~~kPvIAav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~Gl~p~~g-~---------------~~~l  159 (275)
T 1dci_A           98 KTFTVIEKCPKPVIAAIHGGCIGGGVDLISAC--DIRYCTQDAFFQVKEVDVGLAADVG-T---------------LQRL  159 (275)
T ss_dssp             HHHHHHHHSSSCEEEEECSEEETHHHHHHTTS--SEEEEETTCEEECCGGGGTSCCCSS-H---------------HHHG
T ss_pred             HHHHHHHhCCCCEEEEECCeeeHHHHHHHHhC--CEEEEeCCCEEeCcccccCCCCCcc-H---------------HHHH
Confidence            35667888999999999999999999999999  5799999998877554433221111 0               0012


Q ss_pred             HHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCchHHH
Q 031001          117 AKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDAAY  159 (167)
Q Consensus       117 a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~~~~~  159 (167)
                      .+..|. ...-.+++-....++|+||+++||||+|+++.+++.
T Consensus       160 ~r~vG~-~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~~l~  201 (275)
T 1dci_A          160 PKVIGN-RSLVNELTFTARKMMADEALDSGLVSRVFPDKDVML  201 (275)
T ss_dssp             GGTCSC-HHHHHHHHHHCCEEEHHHHHHHTSSSEEESSHHHHH
T ss_pred             HHHhCc-HHHHHHHHHcCCCCCHHHHHHcCCcceecCChHHHH
Confidence            233332 133445555677899999999999999997634433

>1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.85A {Thermus thermophilus} SCOP: c.14.1.3

Probab=98.38  E-value=2.5e-06  Score=68.59  Aligned_cols=99  Identities=14%  Similarity=0.133  Sum_probs=71.2

Q ss_pred             HHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHH
Q 031001           36 YAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIEL  115 (167)
Q Consensus        36 ~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~  115 (167)
                      ..++..|..++.||.+.+.|.|.+.|.-++++|  +-|++.++++|.+-...+    |-..+..  ..           .
T Consensus        84 ~~~~~~i~~~~kPvIAav~G~a~GgG~~lal~c--D~~ia~~~a~f~~pe~~~----Gl~p~~g--~~-----------~  144 (253)
T 1uiy_A           84 MRLFHRVYTYPKPTVAAVNGPAVAGGAGLALAC--DLVVMDEEARLGYTEVKI----GFVAALV--SV-----------I  144 (253)
T ss_dssp             HHHHHHHHHCSSCEEEEECSCEETHHHHHHHTS--SEEEEETTCEEECCHHHH----TCCCHHH--HH-----------H
T ss_pred             HHHHHHHHhCCCCEEEEECCeeeHHHHHHHHhC--CEEEEcCCcEEeCccccc----CcCCchH--HH-----------H
Confidence            345667888999999999999999999999999  579999999887643332    2222221  01           1


Q ss_pred             HHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001          116 LAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ  155 (167)
Q Consensus       116 ~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~  155 (167)
                      +.+..|  .....+++-....++++||+++||||+|.++.
T Consensus       145 l~r~vG--~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~  182 (253)
T 1uiy_A          145 LVRAVG--EKAAKDLLLTGRLVEAREAKALGLVNRIAPPG  182 (253)
T ss_dssp             HHHHSC--HHHHHHHHHHCCEEEHHHHHHHTSCSEEECTT
T ss_pred             HHHHhC--HHHHHHHHHhCCccCHHHHHHCCCcceecChh
Confidence            222222  34445556667899999999999999998753

>2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB: 2a81_A*

Probab=98.38  E-value=3e-06  Score=68.05  Aligned_cols=98  Identities=13%  Similarity=0.080  Sum_probs=70.3

Q ss_pred             HHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHH
Q 031001           36 YAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIEL  115 (167)
Q Consensus        36 ~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~  115 (167)
                      ..++..|..++.||.+.+.|.|.+.|.-++++|  +-|++.++++|.+-...+    |-..+....  .           
T Consensus        84 ~~~~~~i~~~~kPvIAav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~----Gl~p~~g~~--~-----------  144 (250)
T 2a7k_A           84 IDLYQAVLNVNKPTIAAVDGYAIGMGFQFALMF--DQRLMASTANFVMPELKH----GIGCSVGAA--I-----------  144 (250)
T ss_dssp             HHHHHHHHTCCSCEEEEECSEEETHHHHHHTTS--SEEEEETTCEEECCGGGG----TCCCHHHHH--H-----------
T ss_pred             HHHHHHHHcCCCCEEEEECCeEeHHHHHHHHhC--CEEEEcCCCEEeCccccc----CCCCCcHHH--H-----------
Confidence            456778889999999999999999999999999  579999999887744332    322222110  1           


Q ss_pred             HHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCC
Q 031001          116 LAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDS  154 (167)
Q Consensus       116 ~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~  154 (167)
                      +.+..|  ...-.+++-....++++||+++||||+|.++
T Consensus       145 l~~~vG--~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~  181 (250)
T 2a7k_A          145 LGFTHG--FSTMQEIIYQCQSLDAPRCVDYRLVNQVVES  181 (250)
T ss_dssp             HHHHHC--HHHHHHHHHHCCCBCHHHHHHHTCCSEEECH
T ss_pred             HHHHhH--HHHHHHHHHcCCcccHHHHHHcCCcceecCH
Confidence            111222  2334455556778999999999999999864

>2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on prote structural and functional analyses; 2.00A {Geobacillus kaustophilus}

Probab=98.37  E-value=2.2e-06  Score=69.13  Aligned_cols=100  Identities=21%  Similarity=0.141  Sum_probs=70.5

Q ss_pred             HHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHH
Q 031001           36 YAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIEL  115 (167)
Q Consensus        36 ~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~  115 (167)
                      ..++..|..++.||.+.+.|.|.+.|.-++++|  +-|++.++++|.+-...++..-+-..-     ..           
T Consensus        84 ~~~~~~l~~~~kPvIAav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~Gl~p~~g~~-----~~-----------  145 (257)
T 2ej5_A           84 APMMKALHHLEKPVVAAVNGAAAGAGMSLALAC--DFRLLSEKASFAPAFIHVGLVPDAGHL-----YY-----------  145 (257)
T ss_dssp             HHHHHHHHHCCSCEEEEECSEEETHHHHHHHHS--SEEEEETTCEEECCGGGGTCCCCTTHH-----HH-----------
T ss_pred             HHHHHHHHhCCCCEEEEECccccchhHHHHHhC--CEEEEcCCCEEeCcccccCCCCcchHH-----HH-----------
Confidence            456778889999999999999999999999999  579999999887754443322111100     00           


Q ss_pred             HHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001          116 LAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ  155 (167)
Q Consensus       116 ~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~  155 (167)
                      +.+..|  ...-.+++-....++++||+++||||+|.++.
T Consensus       146 l~~~vG--~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~  183 (257)
T 2ej5_A          146 LPRLVG--RAKALELAVLGEKVTAEEAAALGLATKVIPLS  183 (257)
T ss_dssp             HHHHHC--HHHHHHHHHHCCCEEHHHHHHHTCCSEEECGG
T ss_pred             HHHHhC--HHHHHHHHHhCCccCHHHHHHcCCcceecChh
Confidence            111112  23334455557789999999999999998653

>2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase, structural genomics, NPPSFA; 2.16A {Geobacillus kaustophilus}

Probab=98.37  E-value=3.2e-06  Score=68.44  Aligned_cols=99  Identities=15%  Similarity=0.115  Sum_probs=69.9

Q ss_pred             HHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCC-ceeeecccccCCcCChhHHHHHHHHHHHHHHHHHH
Q 031001           36 YAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNS-STKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIE  114 (167)
Q Consensus        36 ~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s-~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~  114 (167)
                      ..++..|..++.||.+.+.|.|.+.|.-++++|  +-|++.+++ +|.+-...++..-+-. -.    ..          
T Consensus        91 ~~~~~~l~~~~kPvIAav~G~a~GgG~~lalac--D~ria~~~ag~f~~pe~~~Gl~p~~g-~~----~~----------  153 (265)
T 2ppy_A           91 NETLDKIARSPQVYIACLEGHTVGGGLEMALAC--DLRFMGDEAGKIGLPEVSLGVLAGTG-GT----QR----------  153 (265)
T ss_dssp             HHHHHHHHHSSSEEEEEECSEEETHHHHHHHTS--SEEEEETTCCCEECCGGGGTCCCTTT-HH----HH----------
T ss_pred             HHHHHHHHcCCCCEEEEECCEEeeHHHHHHHhC--CEEEEeCCCCEEECcccccCCCCCch-HH----HH----------
Confidence            466788899999999999999999999999999  579999999 8877444432221111 00    00          


Q ss_pred             HHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCC
Q 031001          115 LLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDS  154 (167)
Q Consensus       115 ~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~  154 (167)
                       +.+..|  ...-.+++-....++++||+++||||+|.+.
T Consensus       154 -l~~~vG--~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~  190 (265)
T 2ppy_A          154 -LARLIG--YSRALDMNITGETITPQEALEIGLVNRVFPQ  190 (265)
T ss_dssp             -HHHHHC--HHHHHHHHHHCCCBCHHHHHHHTSSSEEECG
T ss_pred             -HHHHhC--HHHHHHHHHhCCccCHHHHHHCCCcceecCH
Confidence             111122  2333444555677999999999999999864

>3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomic for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis}

Probab=98.35  E-value=2.7e-06  Score=69.06  Aligned_cols=98  Identities=17%  Similarity=0.171  Sum_probs=70.7

Q ss_pred             HHHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCc--CChhHHHHHHHHHHHHHHHH
Q 031001           35 AYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSS--GPVTDMWRKAKDLEANAESY  112 (167)
Q Consensus        35 g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~--G~~~dl~~~~~~l~~~~~~~  112 (167)
                      ...++..|..++.||.+.+.|.|.+.|.-++++|  +-|++.++++|.+-...++..-  |-..-+       -      
T Consensus        91 ~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~Gl~p~~g~~~~L-------~------  155 (265)
T 3kqf_A           91 IRTTMEMVEQLPQPVIAAINGIALGGGTELSLAC--DFRIAAESASLGLTETTLAIIPGAGGTQRL-------P------  155 (265)
T ss_dssp             HHHHHHHHHTCSSCEEEEECSEEETHHHHHHHHS--SEEEEETTCEEECCGGGGTCCCCSSHHHHH-------H------
T ss_pred             HHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhC--CEEEEcCCcEEECcccccCcCCCccHHHHH-------H------
Confidence            4567888999999999999999999999999999  5799999999887554433221  111111       1      


Q ss_pred             HHHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCC
Q 031001          113 IELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDS  154 (167)
Q Consensus       113 ~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~  154 (167)
                           +..|  ...-.+++-....++++||+++||||+|++.
T Consensus       156 -----r~vG--~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~  190 (265)
T 3kqf_A          156 -----RLIG--VGRAKELIYTGRRISAQEAKEYGLVEFVVPV  190 (265)
T ss_dssp             -----HHHC--HHHHHHHHHHCCCEEHHHHHHHTSCSEEECG
T ss_pred             -----HHhC--HHHHHHHHHcCCCCCHHHHHHCCCccEEeCH
Confidence                 1111  2223344555678999999999999999974

>1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET: CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A

Probab=98.33  E-value=4e-06  Score=67.77  Aligned_cols=99  Identities=16%  Similarity=0.245  Sum_probs=69.6

Q ss_pred             HHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeee--cCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHH
Q 031001           36 YAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQ--PNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYI  113 (167)
Q Consensus        36 ~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~--p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~  113 (167)
                      ..++..|..++.||.+.+.|.|.+.|.-++++|  +-|++.  ++++|.+-...+    |-..+....            
T Consensus        87 ~~~~~~l~~~~kPvIAav~G~a~GgG~~lalac--D~~ia~~~~~a~f~~pe~~~----Gl~p~~g~~------------  148 (260)
T 1sg4_A           87 QELWLRLYQSNLVLVSAINGACPAGGCLVALTC--DYRILADNPRYCIGLNETQL----GIIAPFWLK------------  148 (260)
T ss_dssp             HHHHHHHHTCSSEEEEEECEEBCHHHHHHHTTS--SEEEEECCTTCCBSCCGGGG----TCCCCHHHH------------
T ss_pred             HHHHHHHHcCCCCEEEEECCeeehHHHHHHHhC--CEEEEecCCCCEEeCchhhh----CCCCchhHH------------
Confidence            456778889999999999999999999999999  579999  899887643332    221111100            


Q ss_pred             HHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCC
Q 031001          114 ELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDS  154 (167)
Q Consensus       114 ~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~  154 (167)
                      ..+.+..|  .....+++-....++++||+++||||+|.+.
T Consensus       149 ~~l~~~vG--~~~a~~llltg~~~~a~eA~~~GLv~~vv~~  187 (260)
T 1sg4_A          149 DTLENTIG--HRAAERALQLGLLFPPAEALQVGIVDQVVPE  187 (260)
T ss_dssp             HHHHHHHC--HHHHHHHHHHTCCBCHHHHHHHTSSSEEECG
T ss_pred             HHHHHHhC--HHHHHHHHHcCCcCCHHHHHHcCCCCEecCH
Confidence            01112222  2234455556778999999999999999854

>3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center for infectious disease, S coenzyme A, tuberculosis; 2.05A {Mycobacterium avium}

Probab=98.31  E-value=5.6e-06  Score=66.78  Aligned_cols=99  Identities=18%  Similarity=0.174  Sum_probs=71.0

Q ss_pred             HHHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCc--CChhHHHHHHHHHHHHHHHH
Q 031001           35 AYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSS--GPVTDMWRKAKDLEANAESY  112 (167)
Q Consensus        35 g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~--G~~~dl~~~~~~l~~~~~~~  112 (167)
                      ...++..|..++.||.+.+.|.|.+.|.-++++|  +-|++.++++|.+-...++..-  |...-+              
T Consensus        81 ~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalac--D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l--------------  144 (255)
T 3p5m_A           81 ANRVVRAITSLPKPVIAGVHGAAVGFGCSLALAC--DLVVAAPASYFQLAFTRVGLMPDGGASALL--------------  144 (255)
T ss_dssp             HHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHS--SEEEECTTCEEECGGGGGTCCCCTTHHHHT--------------
T ss_pred             HHHHHHHHHhCCCCEEEEeCCeehhhHHHHHHHC--CEEEEcCCcEEeCcccccCcCCCccHHHHH--------------
Confidence            4578889999999999999999999999999999  5799999998877444332221  111111              


Q ss_pred             HHHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001          113 IELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ  155 (167)
Q Consensus       113 ~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~  155 (167)
                          .+..|  ...-.+++-....++++||+++||||+|.++.
T Consensus       145 ----~r~vG--~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~  181 (255)
T 3p5m_A          145 ----PLLIG--RARTSRMAMTAEKISAATAFEWGMISHITSAD  181 (255)
T ss_dssp             ----HHHHC--HHHHHHHHHHCCCEEHHHHHHTTSCSEECCTT
T ss_pred             ----HHHhC--HHHHHHHHHcCCCcCHHHHHHCCCCCEeeCHH
Confidence                11111  22223445556789999999999999998764

>3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum, structura genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium marinum M} PDB: 4hc8_A*

Probab=98.30  E-value=6.8e-06  Score=65.42  Aligned_cols=100  Identities=15%  Similarity=0.125  Sum_probs=71.4

Q ss_pred             HHHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHH
Q 031001           35 AYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIE  114 (167)
Q Consensus        35 g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~  114 (167)
                      ...++..|..++.||.+.+.|.|.+.|.-++++|  +-|++.++++|.+-...++..   +.....  .           
T Consensus        84 ~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalac--D~~ia~~~a~f~~pe~~~Gl~---~~~~g~--~-----------  145 (233)
T 3r6h_A           84 GFELSYRLLSYPKPVVIACTGHAIAMGAFLLCSG--DHRVAAHAYNVQANEVAIGMT---IPYAAM--E-----------  145 (233)
T ss_dssp             HHHHHHHHHTCSSCEEEEECSEEETHHHHHHTTS--SEEEECTTCCEECCGGGGTCC---CCHHHH--H-----------
T ss_pred             HHHHHHHHHhCCCCEEEEECCcchHHHHHHHHhC--CEEEEeCCcEEECchhhhCCC---CCccHH--H-----------
Confidence            3567788999999999999999999999999999  579999999887643332211   112110  0           


Q ss_pred             HHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCC
Q 031001          115 LLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDS  154 (167)
Q Consensus       115 ~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~  154 (167)
                      .+.++.|  ...-.+++-....++|+||+++||||+|.++
T Consensus       146 ~l~~~~g--~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~  183 (233)
T 3r6h_A          146 VLKLRLT--PSAYQQAAGLAKTFFGETALAAGFIDEISLP  183 (233)
T ss_dssp             HHHHHSC--HHHHHHHHHSCCEECHHHHHHHTSCSEECCG
T ss_pred             HHHHHhC--HHHHHHHHHcCCcCCHHHHHHcCCCcEeeCH
Confidence            1111222  2334555666788999999999999999865

>3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium marinum}

Probab=98.30  E-value=8.7e-06  Score=65.56  Aligned_cols=97  Identities=15%  Similarity=0.177  Sum_probs=69.0

Q ss_pred             HHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCc--CChhHHHHHHHHHHHHHHHHH
Q 031001           36 YAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSS--GPVTDMWRKAKDLEANAESYI  113 (167)
Q Consensus        36 ~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~--G~~~dl~~~~~~l~~~~~~~~  113 (167)
                      ..++..|..++.||.+.+.|.|.+.|.-++++|  +-|++.++++|.+-...++..-  |...-+       -+   .+ 
T Consensus        89 ~~~~~~l~~~~kPvIAav~G~a~GgG~~lalac--D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l-------~r---~v-  155 (256)
T 3qmj_A           89 RGLIKALAGFPKPLICAVNGLGVGIGATILGYA--DLAFMSSTARLKCPFTSLGVAPEAASSYLL-------PQ---LV-  155 (256)
T ss_dssp             HHHHHHHHHCCSCEEEEECSEEETHHHHGGGGC--SEEEEETTCEEECCGGGC---CCTTHHHHH-------HH---HH-
T ss_pred             HHHHHHHHhCCCCEEEEECCeehhHHHHHHHhC--CEEEEeCCCEEECcccccCCCCCccHHHHH-------HH---Hh-
Confidence            457788999999999999999999999999999  5799999998877544432221  111111       10   01 


Q ss_pred             HHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCC
Q 031001          114 ELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDS  154 (167)
Q Consensus       114 ~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~  154 (167)
                               ....-.+++-....++|+||+++||||+|+++
T Consensus       156 ---------G~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~  187 (256)
T 3qmj_A          156 ---------GRQNAAWLLMSSEWIDAEEALRMGLVWRICSP  187 (256)
T ss_dssp             ---------HHHHHHHHHHSCCCEEHHHHHHHTSSSEEECG
T ss_pred             ---------CHHHHHHHHHcCCCCCHHHHHHCCCccEEeCH
Confidence                     11222444556778899999999999999865

>4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis, ortholog; 2.25A {Mycobacterium marinum}

Probab=98.28  E-value=6.9e-06  Score=67.23  Aligned_cols=98  Identities=18%  Similarity=0.238  Sum_probs=70.5

Q ss_pred             HHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCc--CChhHHHHHHHHHHHHHHHHH
Q 031001           36 YAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSS--GPVTDMWRKAKDLEANAESYI  113 (167)
Q Consensus        36 ~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~--G~~~dl~~~~~~l~~~~~~~~  113 (167)
                      ..++..|..++.||.+.+.|.|.+.|.-++++|  +-|++.++++|.+-...++..-  |...-+               
T Consensus       105 ~~~~~~l~~~~kPvIAav~G~a~GgG~~Lalac--D~ria~~~a~f~~pe~~lGl~p~~g~~~~L---------------  167 (277)
T 4di1_A          105 LEAIDAVAAIPKPTVAAVTGYALGAGLTLALAA--DWRVSGDNVKFGATEILAGLIPGGGGMGRL---------------  167 (277)
T ss_dssp             HHHHHHHHHCSSCEEEEECSEEETHHHHHHHHS--SEEEEETTCEEECGGGGGTCCCCTTHHHHH---------------
T ss_pred             HHHHHHHHhCCCCEEEEECCeEehhHHHHHHhC--CEEEEcCCCEEECcccccCCCCCchHHHHH---------------
Confidence            457788899999999999999999999999999  5799999998877444433221  111111               


Q ss_pred             HHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001          114 ELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ  155 (167)
Q Consensus       114 ~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~  155 (167)
                         .+..|  ...-.+++-....++|+||+++||||+|++..
T Consensus       168 ---~r~vG--~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~  204 (277)
T 4di1_A          168 ---TRVVG--SSRAKELVFSGRFFDAEEALALGLIDDMVAPD  204 (277)
T ss_dssp             ---HHHHC--HHHHHHHHHHCCCEEHHHHHHHTSCSEEECGG
T ss_pred             ---HHHhC--HHHHHHHHHcCCCCCHHHHHHCCCccEEeChh
Confidence               11111  22334455557789999999999999999753

>3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2; 2.00A {Acinetobacter baumannii}

Probab=98.28  E-value=6.8e-06  Score=66.71  Aligned_cols=99  Identities=17%  Similarity=0.191  Sum_probs=69.8

Q ss_pred             HHHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHH
Q 031001           35 AYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIE  114 (167)
Q Consensus        35 g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~  114 (167)
                      ...++..|..++.||.+.+.|.|.+.|.-++++|  +-|++.++++|.+-...++..-+-..-     ..|         
T Consensus        88 ~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~Gl~p~~g~~-----~~l---------  151 (266)
T 3fdu_A           88 PFVLLKSAARLSKPLIIAVKGVAIGIGVTILLQA--DLVFADNTALFQIPFVSLGLSPEGGAS-----QLL---------  151 (266)
T ss_dssp             HHHHHHHHHHCCSCEEEEECSEEETHHHHGGGGC--SEEEECTTCEEECCTTTTTCCCCTTHH-----HHH---------
T ss_pred             HHHHHHHHHhCCCCEEEEECCEEehHHHHHHHhC--CEEEEcCCCEEECchhhhCCCCcchHH-----HHH---------
Confidence            3467788999999999999999999999999999  579999999887744443322111100     001         


Q ss_pred             HHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeC
Q 031001          115 LLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIID  153 (167)
Q Consensus       115 ~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~  153 (167)
                        .+..|  ...-.+++-....++|+||+++||||+|.+
T Consensus       152 --~r~vG--~~~A~~l~ltg~~i~A~eA~~~GLv~~vv~  186 (266)
T 3fdu_A          152 --VKQAG--YHKAAELLFTAKKFNAETALQAGLVNEIVE  186 (266)
T ss_dssp             --HHHHC--HHHHHHHHHHCCEECHHHHHHTTSCSEECS
T ss_pred             --HHHhC--HHHHHHHHHhCCCcCHHHHHHCCCHHHHHH
Confidence              11112  223344455567799999999999999987

>3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: FLC PG4; 1.82A {Bacillus anthracis}

Probab=98.26  E-value=4.9e-06  Score=67.34  Aligned_cols=97  Identities=13%  Similarity=0.123  Sum_probs=70.2

Q ss_pred             HHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCc--CChhHHHHHHHHHHHHHHHHH
Q 031001           36 YAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSS--GPVTDMWRKAKDLEANAESYI  113 (167)
Q Consensus        36 ~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~--G~~~dl~~~~~~l~~~~~~~~  113 (167)
                      ..++..|..++.||.+.+.|.|.+.|.-++++|  +-|++.++++|.+-...++..-  |...-+.              
T Consensus        88 ~~~~~~l~~~~kPvIAav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~--------------  151 (261)
T 3pea_A           88 QVTFERVEKCSKPVIAAIHGAALGGGLEFAMSC--HMRFATESAKLGLPELTLGLIPGFAGTQRLP--------------  151 (261)
T ss_dssp             HHHHHHHHTCSSCEEEEECSEEETHHHHHHHHS--SEEEEETTCEEECCGGGGTCCCCSSHHHHHH--------------
T ss_pred             HHHHHHHHhCCCCEEEEECCeeehHHHHHHHhC--CEEEEcCCCEEECcccccCcCCCccHHHHHH--------------
Confidence            357788999999999999999999999999999  5799999998877544433221  2111111              


Q ss_pred             HHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCC
Q 031001          114 ELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDS  154 (167)
Q Consensus       114 ~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~  154 (167)
                          +..  ....-.+++-....++|+||+++||||+|.+.
T Consensus       152 ----r~v--G~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~  186 (261)
T 3pea_A          152 ----RYV--GKAKACEMMLTSTPITGAEALKWGLVNGVFAE  186 (261)
T ss_dssp             ----HHH--CHHHHHHHHHHCCCEEHHHHHHHTSSSEEECG
T ss_pred             ----HHh--CHHHHHHHHHcCCCCCHHHHHHCCCccEecCH
Confidence                111  12333444555677999999999999999875

>1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold, inter-trimer contacts; 2.10A {Saccharomyces cerevisiae} SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A

Probab=98.26  E-value=6.9e-06  Score=67.06  Aligned_cols=99  Identities=13%  Similarity=-0.001  Sum_probs=70.0

Q ss_pred             HHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeee-cCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHH
Q 031001           37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQ-PNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIEL  115 (167)
Q Consensus        37 aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~-p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~  115 (167)
                      .++..|..++.||.+.+.|.|.+.|+-++++|  +-|++. ++++|.+-...++..-+-. -..               .
T Consensus       103 ~~~~~l~~~~kPvIAav~G~a~GgG~~Lalac--D~~ia~~~~a~f~~pe~~lGl~p~~g-~~~---------------~  164 (280)
T 1pjh_A          103 YVTDAFIKHSKVLICCLNGPAIGLSAALVALC--DIVYSINDKVYLLYPFANLGLITEGG-TTV---------------S  164 (280)
T ss_dssp             HHHHHHHHCCSEEEEEECSCEEHHHHHHHHHS--SEEEESSTTCEEECCHHHHTCCCCTT-HHH---------------H
T ss_pred             HHHHHHHhCCCCEEEEECCeeeeHHHHHHHHC--CEEEEeCCCCEEeCchhhcCCCCCcc-HHH---------------H
Confidence            55678889999999999999999999999999  579999 9998776433322211111 000               1


Q ss_pred             HHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001          116 LAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ  155 (167)
Q Consensus       116 ~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~  155 (167)
                      +.+..|  ...-.+++-....++|+||+++||||+|++..
T Consensus       165 l~r~vG--~~~A~~llltg~~~~a~eA~~~GLv~~vv~~~  202 (280)
T 1pjh_A          165 LPLKFG--TNTTYECLMFNKPFKYDIMCENGFISKNFNMP  202 (280)
T ss_dssp             HHHHHC--HHHHHHHHHTTCCEEHHHHHHTTCCSEECCCC
T ss_pred             HHHHhC--HHHHHHHHHhCCCCCHHHHHHCCCcceeeCCc
Confidence            111122  23345556667789999999999999999775

>3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics, PSI-2, protein structure initiative; 2.50A {Pseudomonas syringae PV}

Probab=98.26  E-value=1.1e-05  Score=64.21  Aligned_cols=99  Identities=17%  Similarity=0.155  Sum_probs=72.1

Q ss_pred             HHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecC-CceeeecccccCCcCC-hhHHHHHHHHHHHHHHHHH
Q 031001           36 YAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPN-SSTKLYLPVVGRSSGP-VTDMWRKAKDLEANAESYI  113 (167)
Q Consensus        36 ~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~-s~~miH~p~~~~~~G~-~~dl~~~~~~l~~~~~~~~  113 (167)
                      ..++..|..++.||.+.+.|.|.+.|.-++++|  +-|++.++ ++|.+-...+    |- +.+...  ..         
T Consensus        84 ~~~~~~l~~~~kPvIAav~G~a~GgG~~lalac--D~ria~~~~a~f~~pe~~~----Gl~p~~~g~--~~---------  146 (232)
T 3ot6_A           84 STLARRMLSHPFPIIVACPGHAVAKGAFLLLSA--DYRIGVAGPFSIGLNEVQI----GMTMHHAGI--EL---------  146 (232)
T ss_dssp             HHHHHHHHTCSSCEEEECCEEEETHHHHHHTTS--SEEEEECSSCCEECCTTTT----TCCCCHHHH--HH---------
T ss_pred             HHHHHHHHcCCCCEEEEECCEeehHHHHHHHHC--CEEEEeCCCcEEECccccc----CCCCchhHH--HH---------
Confidence            467788999999999999999999999999999  57999998 7777633332    22 122110  00         


Q ss_pred             HHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001          114 ELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ  155 (167)
Q Consensus       114 ~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~  155 (167)
                        +..+.  ......+++-....++|+||+++||||+|.++.
T Consensus       147 --l~~~i--g~~~a~~l~ltg~~i~A~eA~~~GLv~~vv~~~  184 (232)
T 3ot6_A          147 --ARDRL--RKSAFNRSVINAEMFDPEGAMAAGFLDKVVSVE  184 (232)
T ss_dssp             --HHHHS--CHHHHHHHHTSCCEECHHHHHHHTSCSEEECTT
T ss_pred             --HHHHh--CHHHHHHHHHcCCccCHHHHHHCCCCCEecCHH
Confidence              11122  234456677778899999999999999999753

>2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, fatty acid metabolism, transit peptide, lipid Met crontonase, mitochondrion, CAsp; 2.3A {Homo sapiens}

Probab=98.23  E-value=4.7e-06  Score=68.49  Aligned_cols=98  Identities=16%  Similarity=0.097  Sum_probs=71.7

Q ss_pred             HHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHH
Q 031001           36 YAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIEL  115 (167)
Q Consensus        36 ~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~  115 (167)
                      ..++..|..++.||.+.+.|.|.+.|.-++++|  +-|++.++++|.+-...+    |-..+....            . 
T Consensus       116 ~~~~~~l~~~~kPvIAav~G~a~GgG~~Lalac--D~ria~~~a~f~~pe~~l----Gl~p~~g~~------------~-  176 (287)
T 2vx2_A          116 SKVMMHIRNHPVPVIAMVNGLATAAGCQLVASC--DIAVASDKSSFATPGVNV----GLFCSTPGV------------A-  176 (287)
T ss_dssp             HHHHHHHHTCSSCEEEEECSEEETHHHHHHHHS--SEEEEETTCEEECCGGGG----TCCCHHHHH------------H-
T ss_pred             HHHHHHHHhCCCCEEEEECCEEEcHHHHHHHhC--CEEEEcCCCEEECchhhh----CCCCchHHH------------H-
Confidence            456778899999999999999999999999999  579999999887744432    322222110            1 


Q ss_pred             HHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCC
Q 031001          116 LAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDS  154 (167)
Q Consensus       116 ~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~  154 (167)
                      +.+..|  ...-.+++-....++|+||+++||||+|+++
T Consensus       177 L~r~vG--~~~A~~llltg~~i~A~eA~~~GLv~~vv~~  213 (287)
T 2vx2_A          177 LARAVP--RKVALEMLFTGEPISAQEALLHGLLSKVVPE  213 (287)
T ss_dssp             HHTTSC--HHHHHHHHHHCCCEEHHHHHHHTSCSEEECG
T ss_pred             HHHHhh--HHHHHHHHHhCCCCCHHHHHHCCCcceecCH
Confidence            222223  3344555666778999999999999999865

>3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics center for infectious DI enoyl COA, actinobacteria, lyase; 1.50A {Mycobacterium smegmatis}

Probab=98.23  E-value=3.5e-06  Score=68.32  Aligned_cols=97  Identities=15%  Similarity=0.129  Sum_probs=70.1

Q ss_pred             HHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCC--cCChhHHHHHHHHHHHHHHHHHH
Q 031001           37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRS--SGPVTDMWRKAKDLEANAESYIE  114 (167)
Q Consensus        37 aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~--~G~~~dl~~~~~~l~~~~~~~~~  114 (167)
                      .++..|..++.||.+.+.|.|.+.|.-++++|  +-|++.++++|.+-...++..  .|-..-+.               
T Consensus        91 ~~~~~l~~~~kPvIAav~G~a~GgG~~lalac--D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~---------------  153 (263)
T 3moy_A           91 SGWDSLTQVRKPIVAAVAGYALGGGCELAMLC--DLVIAADTARFGQPEITLGILPGLGGTQRLT---------------  153 (263)
T ss_dssp             HHHHHHTTCCSCEEEEECBEEETHHHHHHHHS--SEEEEETTCEEECGGGGGTCCCSSSTTTHHH---------------
T ss_pred             HHHHHHHhCCCCEEEEECCEeehHHHHHHHHC--CEEEecCCCEEeCcccccCCCCchhHHHHHH---------------
Confidence            46788999999999999999999999999999  479999999887754443322  12221111               


Q ss_pred             HHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001          115 LLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ  155 (167)
Q Consensus       115 ~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~  155 (167)
                         +..|  ...-.+++-....++++||+++||||+|.++.
T Consensus       154 ---~~vG--~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~  189 (263)
T 3moy_A          154 ---RAVG--KAKAMDLCLTGRSLTAEEAERVGLVSRIVPAA  189 (263)
T ss_dssp             ---HHHC--HHHHHHHHHHCCEEEHHHHHHTTSCSEEECGG
T ss_pred             ---HHhC--HHHHHHHHHcCCCCCHHHHHHCCCccEecCch
Confidence               1111  12233445557789999999999999998753

>3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics, protein structure INI NEW YORK structural genomix research consortium; 2.00A {Rhodopseudomonas palustris}

Probab=98.21  E-value=9.6e-06  Score=66.28  Aligned_cols=99  Identities=18%  Similarity=0.216  Sum_probs=71.6

Q ss_pred             HHHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCc--CChhHHHHHHHHHHHHHHHH
Q 031001           35 AYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSS--GPVTDMWRKAKDLEANAESY  112 (167)
Q Consensus        35 g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~--G~~~dl~~~~~~l~~~~~~~  112 (167)
                      ...++..|..++.||.+.+.|.|.+.|.-++++|  +-|++.++++|.+-...++..-  |-..-+              
T Consensus        95 ~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~Gl~p~~g~~~~L--------------  158 (275)
T 3hin_A           95 WHRVFDKIQYCRVPVIAALKGAVIGGGLELACAA--HIRVAEASAYYALPEGSRGIFVGGGGSVRL--------------  158 (275)
T ss_dssp             HHHHHHHHHTCSSCEEEEECSEEETHHHHHHHHS--SEEEEETTCEEECGGGGGTCCCCSSHHHHH--------------
T ss_pred             HHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhC--CEEEEcCCCEEECchhccCCCCCccHHHHH--------------
Confidence            3567788999999999999999999999999999  5799999998877544433221  111111              


Q ss_pred             HHHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001          113 IELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ  155 (167)
Q Consensus       113 ~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~  155 (167)
                          .+..|  ...-.+++-....++|+||+++||||+|+++.
T Consensus       159 ----~r~vG--~~~A~~l~ltG~~i~A~eA~~~GLv~~vv~~~  195 (275)
T 3hin_A          159 ----PRLIG--VARMADMMLTGRVYSAAEGVVHGFSQYLIENG  195 (275)
T ss_dssp             ----HHHHC--HHHHHHHHHHCCCEEHHHHHHHTSCSEEESSS
T ss_pred             ----HHHhC--HHHHHHHHHcCCCCCHHHHHHCCCCCEEeChh
Confidence                11112  23334455567789999999999999999764

>3hrx_A Probable enoyl-COA hydratase; the spiral fold, the crotonase superfamily, lyase; 1.85A {Thermus thermophilus}

Probab=98.21  E-value=1.2e-05  Score=64.70  Aligned_cols=102  Identities=15%  Similarity=0.118  Sum_probs=70.7

Q ss_pred             HHHHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHH
Q 031001           34 DAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYI  113 (167)
Q Consensus        34 ~g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~  113 (167)
                      ....++..|..++.||.+.+.|.|.+.|.-++++|  +-|++.++++|.+-...++-.-+-..-     ..|-+.     
T Consensus        79 ~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~lGl~p~~g~~-----~~L~r~-----  146 (254)
T 3hrx_A           79 RYNRVVEALSGLEKPLVVAVNGVAAGAGMSLALWG--DLRLAAVGASFTTAFVRIGLVPDSGLS-----FLLPRL-----  146 (254)
T ss_dssp             HHHHHHHHHHTCSSCEEEEECSEEETHHHHHHTTC--SEEEEETTCEEECCGGGGTCCCCTTHH-----HHHHHH-----
T ss_pred             HHHHHHHHHHhCCCCEEEEECCEeeehhhhhhhcc--ceeeEcCCCEEEchhhCcCcCCcccHH-----HHHHHH-----
Confidence            44567889999999999999999999999999999  579999999887644433322111100     011110     


Q ss_pred             HHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001          114 ELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ  155 (167)
Q Consensus       114 ~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~  155 (167)
                            .  ....-.+++-....++|+||+++||||+|+++.
T Consensus       147 ------v--G~~~A~~llltg~~i~A~eA~~~GLv~~vv~~~  180 (254)
T 3hrx_A          147 ------V--GLAKAQELLLLSPRLSAEEALALGLVHRVVPAE  180 (254)
T ss_dssp             ------H--CHHHHHHHHHHCCCEEHHHHHHHTSCSEEECGG
T ss_pred             ------h--CcchHHHHhhcCcccCHHHHHHCCCeEEecCcH
Confidence                  1  122223334445678999999999999998764

>2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA; 2.9A {Staphylococcus aureus}

Probab=98.21  E-value=8.6e-06  Score=66.29  Aligned_cols=97  Identities=18%  Similarity=0.112  Sum_probs=71.2

Q ss_pred             HHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCc--CChhHHHHHHHHHHHHHHHHH
Q 031001           36 YAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSS--GPVTDMWRKAKDLEANAESYI  113 (167)
Q Consensus        36 ~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~--G~~~dl~~~~~~l~~~~~~~~  113 (167)
                      ..++..|..++.||.+.+.|.|.+.|.-++++|  +-|++.++++|.+-...++..-  |-..-+               
T Consensus        97 ~~~~~~l~~~~kPvIAav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~Gl~p~~g~~~~l---------------  159 (273)
T 2uzf_A           97 LDLQRLIRIIPKPVIAMVKGYAVGGGNVLNVVC--DLTIAADNAIFGQTGPKVGSFDAGYGSGYL---------------  159 (273)
T ss_dssp             HHHHHHHHHSSSCEEEEECEEEETHHHHHHHHS--SEEEEETTCEEECCGGGTTCCCCSTTTHHH---------------
T ss_pred             HHHHHHHHhCCCCEEEEECCEEeehhHHHHHhC--CEEEEcCCCEEECchhhhCCCCchhHHHHH---------------
Confidence            366788899999999999999999999999999  5799999998877554433221  222111               


Q ss_pred             HHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCC
Q 031001          114 ELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDS  154 (167)
Q Consensus       114 ~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~  154 (167)
                         .+..|  ...-.+++-....++|+||+++||||+|++.
T Consensus       160 ---~~~vG--~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~  195 (273)
T 2uzf_A          160 ---ARIVG--HKKAREIWYLCRQYNAQEALDMGLVNTVVPL  195 (273)
T ss_dssp             ---HHHHC--HHHHHHHHHTCCCEEHHHHHHHTSSSEEECG
T ss_pred             ---HHHhC--HHHHHHHHHhCCCCCHHHHHHcCCCccccCH
Confidence               11112  2333455666789999999999999999864

>2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A 2q2x_A

Probab=98.21  E-value=8.7e-06  Score=65.20  Aligned_cols=97  Identities=14%  Similarity=0.165  Sum_probs=67.6

Q ss_pred             HHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHHH
Q 031001           38 IADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLA  117 (167)
Q Consensus        38 I~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a  117 (167)
                      ++..|..++.||.+.+.|.|.+.|.-++++|  +-|++.++++|.+-...++..-+-..-     .           .+.
T Consensus        82 ~~~~l~~~~kPvIAav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~Gl~p~~g~~-----~-----------~l~  143 (243)
T 2q35_A           82 LSGLILDCEIPIIAAMQGHSFGGGLLLGLYA--DFVVFSQESVYATNFMKYGFTPVGATS-----L-----------ILR  143 (243)
T ss_dssp             CHHHHHTCCSCEEEEECSEEETHHHHHHHTS--SEEEEESSSEEECCHHHHTSCCCSSHH-----H-----------HHH
T ss_pred             HHHHHHhCCCCEEEEEcCccccchHHHHHhC--CEEEEeCCCEEECCccccCCCCcchHH-----H-----------HHH
Confidence            5678889999999999999999999999999  579999999877643332221111100     0           011


Q ss_pred             HHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCC
Q 031001          118 KGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDS  154 (167)
Q Consensus       118 ~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~  154 (167)
                      +..|  ...-.+++-....++++||+++||||+|.++
T Consensus       144 ~~vG--~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~  178 (243)
T 2q35_A          144 EKLG--SELAQEMIYTGENYRGKELAERGIPFPVVSR  178 (243)
T ss_dssp             HHHC--HHHHHHHHHHCCCEEHHHHHHTTCSSCEECH
T ss_pred             HHhC--HHHHHHHHHcCCCCCHHHHHHcCCCCEecCh
Confidence            1112  2233444555677999999999999999854

>2gtr_A CDY-like, chromodomain Y-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 1.90A {Homo sapiens} PDB: 2fw2_A

Probab=98.19  E-value=9.9e-06  Score=65.42  Aligned_cols=99  Identities=15%  Similarity=0.113  Sum_probs=68.3

Q ss_pred             HHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHH
Q 031001           37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELL  116 (167)
Q Consensus        37 aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~  116 (167)
                      .++..|..++.||.+.+.|.|.+.|.-++++|  +-|++.++++|.+-...++..-+-. -.    ..|           
T Consensus        92 ~~~~~l~~~~kPvIAav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~Gl~p~~g-~~----~~l-----------  153 (261)
T 2gtr_A           92 NFVNTFIQFKKPIIVAVNGPAIGLGASILPLC--DVVWANEKAWFQTPYTTFGQSPDGC-ST----VMF-----------  153 (261)
T ss_dssp             HHHHHHHHCCSCEEEEECSCEETHHHHTGGGS--SEEEEETTCEEECCTTTTTCCCCTT-HH----HHH-----------
T ss_pred             HHHHHHHhCCCCEEEEECCeEeeHHHHHHHhC--CEEEEcCCCEEeCchhccCCCccch-HH----HHH-----------
Confidence            45667888999999999999999999999999  5799999998877444332211110 00    001           


Q ss_pred             HHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001          117 AKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ  155 (167)
Q Consensus       117 a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~  155 (167)
                      .+..|  .....+++-....++++||+++||||+|+++.
T Consensus       154 ~~~vG--~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~  190 (261)
T 2gtr_A          154 PKIMG--GASANEMLLSGRKLTAQEACGKGLVSQVFWPG  190 (261)
T ss_dssp             HHHHC--HHHHHHHHHHCCCEEHHHHHHTTSCSEEECGG
T ss_pred             HHHcC--HHHHHHHHHcCCCCCHHHHHHCCCcccccChh
Confidence            11112  23334445556779999999999999998653

>3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative, EN hydratase; 1.76A {Bordetella parapertussis}

Probab=98.19  E-value=1.7e-05  Score=63.84  Aligned_cols=97  Identities=14%  Similarity=0.157  Sum_probs=72.2

Q ss_pred             HHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHH
Q 031001           36 YAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIEL  115 (167)
Q Consensus        36 ~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~  115 (167)
                      ..++..|..++.||.+.+.|.|.+.|.-++++|  +-|++.++++|.+-...++..-|    .               ..
T Consensus        88 ~~~~~~l~~~~kPvIAav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~Gl~pg----~---------------~~  146 (254)
T 3isa_A           88 EMLLQRVAGSPSLTLALAHGRNFGAGVDLFAAC--KWRYCTPEAGFRMPGLKFGLVLG----T---------------RR  146 (254)
T ss_dssp             HHHHHHHHTCSSEEEEEECSEEETHHHHHHHHS--SEEEECTTCEEECCGGGGTCCCS----H---------------HH
T ss_pred             HHHHHHHHhCCCCEEEEECCeEeecchhHHHhC--CEEEEcCCCEEECchhccCccHH----H---------------HH
Confidence            456788899999999999999999999999999  57999999988775444332211    0               01


Q ss_pred             HHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001          116 LAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ  155 (167)
Q Consensus       116 ~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~  155 (167)
                      +.+..|  ...-.+++-....++|+||+++||||+|+++.
T Consensus       147 l~~~vG--~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~  184 (254)
T 3isa_A          147 FRDIVG--ADQALSILGSARAFDADEARRIGFVRDCAAQA  184 (254)
T ss_dssp             HHHHHC--HHHHHHHHTTTCEEEHHHHHHTTSSSEECCGG
T ss_pred             HHHHcC--HHHHHHHHHhCCCCcHHHHHHCCCccEEeChh
Confidence            122222  23345666677889999999999999998753

>3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 2.05A {Streptomyces coelicolor A3}

Probab=98.19  E-value=6.9e-06  Score=67.01  Aligned_cols=98  Identities=18%  Similarity=0.209  Sum_probs=70.1

Q ss_pred             HHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCC-cC--ChhHHHHHHHHHHHHHHHH
Q 031001           36 YAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRS-SG--PVTDMWRKAKDLEANAESY  112 (167)
Q Consensus        36 ~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~-~G--~~~dl~~~~~~l~~~~~~~  112 (167)
                      ..++..|..++.||.+.+.|.|.+.|.-++++|  +-|++.++++|.+-...++.. -+  -..-+       -      
T Consensus       103 ~~~~~~l~~~~kPvIAav~G~a~GgG~~lalac--D~~ia~~~a~f~~pe~~~Gl~~p~~g~~~~l-------~------  167 (279)
T 3g64_A          103 GQVVRAVRECPFPVIAALHGVAAGAGAVLALAA--DFRVADPSTRFAFLFTRVGLSGGDMGAAYLL-------P------  167 (279)
T ss_dssp             HHHHHHHHHSSSCEEEEECSEEETHHHHHHHHS--SEEEECTTCEEECCGGGGTCCSCCTTHHHHH-------H------
T ss_pred             HHHHHHHHhCCCCEEEEEcCeeccccHHHHHhC--CEEEEeCCCEEeCchhhcCCCCCchhHHHHH-------H------
Confidence            457778899999999999999999999999999  579999999887754443322 11  11111       1      


Q ss_pred             HHHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001          113 IELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ  155 (167)
Q Consensus       113 ~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~  155 (167)
                           +..  ....-.+++-....++++||+++||||+|++..
T Consensus       168 -----r~v--G~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~  203 (279)
T 3g64_A          168 -----RVV--GLGHATRLLMLGDTVRAPEAERIGLISELTEEG  203 (279)
T ss_dssp             -----HHH--CHHHHHHHHHHCCCEEHHHHHHHTCCSEECCTT
T ss_pred             -----HHh--CHHHHHHHHHcCCCcCHHHHHHCCCCCEecCch
Confidence                 111  122234445556779999999999999998754

>1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural genomics, riken S genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.14.1.3

Probab=98.18  E-value=9e-06  Score=65.82  Aligned_cols=97  Identities=11%  Similarity=-0.007  Sum_probs=68.7

Q ss_pred             HHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCc--CChhHHHHHHHHHHHHHHHHHH
Q 031001           37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSS--GPVTDMWRKAKDLEANAESYIE  114 (167)
Q Consensus        37 aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~--G~~~dl~~~~~~l~~~~~~~~~  114 (167)
                      .++..|..++.||.+.+.|.|.+.|.-++++|  +-|++.++++|.+-...++..-  |-..-                 
T Consensus        95 ~~~~~l~~~~kPvIAav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~Gl~p~~g~~~~-----------------  155 (264)
T 1wz8_A           95 DLVLGPLNFPRPVVAAVEKVAVGAGLALALAA--DIAVVGKGTRLLDGHLRLGVAAGDHAVLL-----------------  155 (264)
T ss_dssp             HHHHHHHHSSSCEEEEECSEEETHHHHHHHHS--SEEEEETTCEEECCHHHHTSCCTTTHHHH-----------------
T ss_pred             HHHHHHHcCCCCEEEEECCeeechhHHHHHhC--CEEEecCCCEEeCchhhcCcCCCccHHHH-----------------
Confidence            45667888999999999999999999999999  5799999998877443322211  11111                 


Q ss_pred             HHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001          115 LLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ  155 (167)
Q Consensus       115 ~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~  155 (167)
                       +.+..|  ...-.+++-....++|+||+++||||+|+++.
T Consensus       156 -l~r~vG--~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~  193 (264)
T 1wz8_A          156 -WPLLVG--MAKAKYHLLLNEPLTGEEAERLGLVALAVEDE  193 (264)
T ss_dssp             -THHHHC--HHHHHHHHHHTCCEEHHHHHHHTSSSEEECGG
T ss_pred             -HHHHhC--HHHHHHHHHcCCCCCHHHHHHCCCceeecChh
Confidence             111112  23334455556779999999999999998643

>3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics; 1.58A {Legionella pneumophila subsp} SCOP: c.14.1.0

Probab=98.18  E-value=2e-05  Score=64.07  Aligned_cols=98  Identities=9%  Similarity=0.032  Sum_probs=69.7

Q ss_pred             HHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHH
Q 031001           36 YAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIEL  115 (167)
Q Consensus        36 ~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~  115 (167)
                      ..++..|..++.||.+.+.|.|.+.|.-++++|  +-|++.++++|.+-...++..    .+...  ..|.         
T Consensus        89 ~~~~~~l~~~~kPvIAav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~Gl~----p~~g~--~~l~---------  151 (268)
T 3i47_A           89 GNLMYSISQSPKPTIAMVQGAAFGGGAGLAAAC--DIAIASTSARFCFSEVKLGLI----PAVIS--PYVV---------  151 (268)
T ss_dssp             HHHHHHHHHCSSCEEEEECSEEETHHHHHHHHS--SEEEEETTCEEECCGGGGTCC----CTTTH--HHHH---------
T ss_pred             HHHHHHHHhCCCCEEEEECCEEEhHhHHHHHhC--CEEEEcCCCEEECcccccCCC----cccHH--HHHH---------
Confidence            356778889999999999999999999999999  579999999887643332221    11100  0111         


Q ss_pred             HHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCC
Q 031001          116 LAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDS  154 (167)
Q Consensus       116 ~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~  154 (167)
                        +..  ....-.+++-....++|+||+++||||+|++.
T Consensus       152 --~~v--G~~~A~~llltg~~i~A~eA~~~GLV~~vv~~  186 (268)
T 3i47_A          152 --RAI--GERAAKMLFMSAEVFDATRAYSLNLVQHCVPD  186 (268)
T ss_dssp             --HHH--CHHHHHHHHHHCCEEEHHHHHHTTSCSEEECG
T ss_pred             --HHh--CHHHHHHHHHcCCccCHHHHHHcCCCcEeeCh
Confidence              111  12333455556788999999999999999876

>2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid metabolism, STR genomics, structural genomics consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3

Probab=98.17  E-value=2.1e-05  Score=64.24  Aligned_cols=99  Identities=15%  Similarity=0.101  Sum_probs=70.8

Q ss_pred             HHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHH
Q 031001           37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELL  116 (167)
Q Consensus        37 aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~  116 (167)
                      .++..|..++.||.+.+.|.|.+.|.-++++|  +-|++.++++|.+-...++..-+-. -.    ..           +
T Consensus       112 ~~~~~l~~~~kPvIAav~G~a~GgG~~Lalac--D~ria~~~a~f~~pe~~~Gl~p~~g-~~----~~-----------L  173 (280)
T 2f6q_A          112 EFVGCFIDFPKPLIAVVNGPAVGISVTLLGLF--DAVYASDRATFHTPFSHLGQSPEGC-SS----YT-----------F  173 (280)
T ss_dssp             HHHHHHHSCCSCEEEEECSCEETHHHHGGGGC--SEEEEETTCEEECCTGGGTCCCCTT-HH----HH-----------H
T ss_pred             HHHHHHHcCCCCEEEEECCeeehHHHHHHHhC--CEEEECCCcEEECchHhhCCCCccc-HH----HH-----------H
Confidence            56778889999999999999999999999999  5799999998877444332221111 00    00           1


Q ss_pred             HHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001          117 AKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ  155 (167)
Q Consensus       117 a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~  155 (167)
                      .+..|  ...-.+++-....++|+||+++||||+|+++.
T Consensus       174 ~r~vG--~~~A~~l~ltg~~~~A~eA~~~GLv~~vv~~~  210 (280)
T 2f6q_A          174 PKIMS--PAKATEMLIFGKKLTAGEACAQGLVTEVFPDS  210 (280)
T ss_dssp             HHHHC--HHHHHHHHTTCCCEEHHHHHHTTSCSEEECTT
T ss_pred             HHHhC--HHHHHHHHHcCCCCCHHHHHHCCCcceEECHH
Confidence            11122  23345566678889999999999999998754

>3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.35A {Mycobacterium abscessus}

Probab=98.16  E-value=1.4e-05  Score=65.72  Aligned_cols=103  Identities=15%  Similarity=0.077  Sum_probs=70.5

Q ss_pred             HHHHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHH
Q 031001           34 DAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYI  113 (167)
Q Consensus        34 ~g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~  113 (167)
                      ....++..|..++.||.+.+.|.|.+.|.-++++|  +-|++.++++|.+-...++..-+..--..    .|        
T Consensus       111 ~~~~~~~~l~~~~kPvIAav~G~a~GgG~~Lalac--D~ria~~~a~f~~pe~~~Gl~p~~~g~~~----~L--------  176 (290)
T 3sll_A          111 LLDEVILTLRRMHQPVIAAINGAAIGGGLCLALAC--DVRVASQDAYFRAAGINNGLTASELGLSY----LL--------  176 (290)
T ss_dssp             HHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHS--SEEEEETTCEEECTTTTTTSCSCCTTHHH----HH--------
T ss_pred             HHHHHHHHHHhCCCCEEEEECCeehHHHHHHHHHC--CEEEEeCCCEEECchhccCcCCCcccHHH----HH--------
Confidence            34567888899999999999999999999999999  57999999988763333222211010000    01        


Q ss_pred             HHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001          114 ELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ  155 (167)
Q Consensus       114 ~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~  155 (167)
                         .+..|  ...-.+++-....++|+||+++||||+|++..
T Consensus       177 ---~r~vG--~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~  213 (290)
T 3sll_A          177 ---PRAIG--TSRASDIMLTGRDVDADEAERIGLVSRKVASE  213 (290)
T ss_dssp             ---HHHHC--HHHHHHHHHHCCCEEHHHHHHHTSSSEEECGG
T ss_pred             ---HHHhC--HHHHHHHHHcCCCCCHHHHHHCCCccEEeChh
Confidence               11111  22234445556779999999999999998653

>3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism, lyase, structural genomics; HET: PGE; 2.30A {Mycobacterium tuberculosis}

Probab=98.15  E-value=8.3e-06  Score=66.36  Aligned_cols=101  Identities=19%  Similarity=0.193  Sum_probs=71.1

Q ss_pred             HHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHH
Q 031001           33 TDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESY  112 (167)
Q Consensus        33 ~~g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~  112 (167)
                      .....++..|..++.||.+.+.|.|.+.|.-++++|  +-|++.++++|.+-...++    -..+...    ..      
T Consensus        94 ~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~G----l~p~~g~----~~------  157 (264)
T 3he2_A           94 DRLIELHKAMDASPMPVVGAINGPAIGAGLQLAMQC--DLRVVAPDAFFQFPTSKYG----LALDNWS----IR------  157 (264)
T ss_dssp             HHHHHHHHHHHHCSSCEEEEECSCEETHHHHHHHHS--SEEEECTTCEEECTHHHHT----CCCCHHH----HH------
T ss_pred             HHHHHHHHHHHhCCCCEEEEECCcEEcchhHHHHhC--CEEEEcCCCEEECcccccC----cCCcchH----HH------
Confidence            445678889999999999999999999999999999  5799999998776333322    1111100    00      


Q ss_pred             HHHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeC
Q 031001          113 IELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIID  153 (167)
Q Consensus       113 ~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~  153 (167)
                        .+.+..|  ...-.+++-....++++||+++||||+|.+
T Consensus       158 --~L~r~vG--~~~A~~llltG~~i~A~eA~~~GLV~~v~~  194 (264)
T 3he2_A          158 --RLSSLVG--HGRARAMLLSAEKLTAEIALHTGMANRIGT  194 (264)
T ss_dssp             --HHHHHHC--HHHHHHHHHHCCCEEHHHHHHHTSCSEECC
T ss_pred             --HHHHHhC--HHHHHHHHHcCCCccHHHHHHCCCeEEEec
Confidence              1111112  233345555678899999999999999975

>3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural genomics center for infectious lyase; 1.55A {Mycobacterium smegmatis}

Probab=98.14  E-value=9.2e-06  Score=66.68  Aligned_cols=98  Identities=12%  Similarity=0.105  Sum_probs=70.9

Q ss_pred             HHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHH
Q 031001           36 YAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIEL  115 (167)
Q Consensus        36 ~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~  115 (167)
                      ..++..|..++.||.+.+.|.|.+.|.-++++|  +-|++.++++|.+-...++.. +.. -.  +  .           
T Consensus       109 ~~~~~~l~~~~kPvIAav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~lGl~-~~g-~~--~--~-----------  169 (286)
T 3myb_A          109 TDVMLAIQRLPAPVIARVHGIATAAGCQLVAMC--DLAVATRDARFAVSGINVGLF-CST-PG--V--A-----------  169 (286)
T ss_dssp             HHHHHHHHHSSSCEEEEECSCEETHHHHHHHHS--SEEEEETTCEEECGGGGGTCC-CHH-HH--H--H-----------
T ss_pred             HHHHHHHHcCCCCEEEEECCeehHHHHHHHHhC--CEEEEcCCCEEECcccccCCC-Cch-HH--H--H-----------
Confidence            467778889999999999999999999999999  579999999887744443322 111 10  0  1           


Q ss_pred             HHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCC
Q 031001          116 LAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDS  154 (167)
Q Consensus       116 ~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~  154 (167)
                      +.+.  .......+++-....++|+||+++||||+|.+.
T Consensus       170 L~r~--vG~~~A~~llltG~~i~A~eA~~~GLv~~vv~~  206 (286)
T 3myb_A          170 LSRN--VGRKAAFEMLVTGEFVSADDAKGLGLVNRVVAP  206 (286)
T ss_dssp             HTTT--SCHHHHHHHHHHCCCEEHHHHHHHTSCSEEECG
T ss_pred             HHHH--cCHHHHHHHHHcCCCCCHHHHHHCCCCcEecCH
Confidence            1111  123344555656777999999999999999874

>2fbm_A Y chromosome chromodomain protein 1, telomeric IS; acetyltransferase, structural genomics, structural genomics consortium, SGC, unknown function; 2.28A {Homo sapiens} SCOP: c.14.1.3

Probab=98.14  E-value=1.4e-05  Score=65.88  Aligned_cols=99  Identities=16%  Similarity=0.166  Sum_probs=69.9

Q ss_pred             HHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHH
Q 031001           37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELL  116 (167)
Q Consensus        37 aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~  116 (167)
                      .++..|..++.||.+.+.|.|.+.|+-++++|  +-|++.++++|.+-...++..-+-..-     ..           +
T Consensus       110 ~~~~~l~~~~kPvIAaV~G~a~GgG~~Lalac--D~ria~~~a~f~~pe~~lGl~p~~g~~-----~~-----------L  171 (291)
T 2fbm_A          110 NFVNTFIQFKKPIVVSVNGPAIGLGASILPLC--DLVWANEKAWFQTPYTTFGQSPDGCSS-----IT-----------F  171 (291)
T ss_dssp             HHHHHHHHCCSCEEEEECSCEETHHHHTGGGS--SEEEEETTCEEECCHHHHTCCCCTTHH-----HH-----------H
T ss_pred             HHHHHHHhCCCCEEEEECCeeecHHHHHHHhC--CEEEEeCCCEEECcHHhcCCCCcccHH-----HH-----------H
Confidence            45667888999999999999999999999999  579999999887644332221111000     00           1


Q ss_pred             HHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001          117 AKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ  155 (167)
Q Consensus       117 a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~  155 (167)
                      .+..|  .....+++-....++|+||+++||||+|+++.
T Consensus       172 ~r~vG--~~~A~el~ltg~~i~A~eA~~~GLV~~vv~~~  208 (291)
T 2fbm_A          172 PKMMG--KASANEMLIAGRKLTAREACAKGLVSQVFLTG  208 (291)
T ss_dssp             HHHHC--HHHHHHHHTSCCEEEHHHHHHTTSCSEEECST
T ss_pred             HHHHh--HHHHHHHHHcCCccCHHHHHHCCCcceecChh
Confidence            11122  23445566677889999999999999998653

>3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi}

Probab=98.14  E-value=1.1e-05  Score=65.22  Aligned_cols=99  Identities=15%  Similarity=0.097  Sum_probs=71.6

Q ss_pred             HHHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHH
Q 031001           35 AYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIE  114 (167)
Q Consensus        35 g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~  114 (167)
                      ...++..|..++.||.+.+.|.|.+.|.-++++|  +-|++.++++|.+-...++.. +   ...  ..           
T Consensus        93 ~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~Gl~-~---~g~--~~-----------  153 (263)
T 3l3s_A           93 CSALMLDLAHCPKPTIALVEGIATAAGLQLMAAC--DLAYASPAARFCLPGVQNGGF-C---TTP--AV-----------  153 (263)
T ss_dssp             HHHHHHHHHTCSSCEEEEESSEEETHHHHHHHHS--SEEEECTTCEEECCTTTTTSC-C---HHH--HH-----------
T ss_pred             HHHHHHHHHhCCCCEEEEECCEEEHHHHHHHHHC--CEEEecCCCEEeCchhccCCC-C---ccH--HH-----------
Confidence            3567788999999999999999999999999999  579999999887743332222 1   111  00           


Q ss_pred             HHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCC
Q 031001          115 LLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDS  154 (167)
Q Consensus       115 ~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~  154 (167)
                      .+.+..  ....-.+++-....++|+||+++||||+|+++
T Consensus       154 ~l~r~v--G~~~A~~l~ltg~~~~A~eA~~~GLv~~vv~~  191 (263)
T 3l3s_A          154 AVSRVI--GRRAVTEMALTGATYDADWALAAGLINRILPE  191 (263)
T ss_dssp             HHHTTS--CHHHHHHHHHHCCEEEHHHHHHHTSSSEECCH
T ss_pred             HHHHHc--CHHHHHHHHHcCCCCCHHHHHHCCCccEEeCH
Confidence            111222  33444555666778999999999999999864

>3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH; polyketide synthase, enoyl COA hydratase,isomerase; 2.32A {Bacillus subtilis}

Probab=98.13  E-value=1.4e-05  Score=64.97  Aligned_cols=102  Identities=15%  Similarity=0.048  Sum_probs=72.6

Q ss_pred             HHHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHH
Q 031001           35 AYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIE  114 (167)
Q Consensus        35 g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~  114 (167)
                      ...++..|..++.||.+.+.|.|.+.|.-++++|  +-|++.++++|.+-...++..-+-.  .    ..|-        
T Consensus        89 ~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~Gl~p~~g--~----~~l~--------  152 (267)
T 3hp0_A           89 LYDLWMKLQTGPYVTISHVRGKVNAGGLGFVSAT--DIAIADQTASFSLSELLFGLYPACV--L----PFLI--------  152 (267)
T ss_dssp             HHHHHHHHHHSSSEEEEEECSEEETTHHHHHHHS--SEEEECTTCEEECCGGGGTCCCTTT--H----HHHH--------
T ss_pred             HHHHHHHHHcCCCCEEEEECCEEeehHHHHHHhC--CEEEEcCCCEEECchhccCcCchhH--H----HHHH--------
Confidence            4567888999999999999999999999999999  5799999998877444433221111  1    0111        


Q ss_pred             HHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCchH
Q 031001          115 LLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDA  157 (167)
Q Consensus       115 ~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~~~  157 (167)
                         +..  ....-.+++-....++|+||+++||||+|.++.++
T Consensus       153 ---r~v--G~~~A~ellltg~~i~A~eA~~~GLV~~vv~~~~~  190 (267)
T 3hp0_A          153 ---RRI--GRQKAHYMTLMTKPISVQEASEWGLIDAFDAESDV  190 (267)
T ss_dssp             ---HHH--CHHHHHHHHHHCCCBCHHHHHHHTSSSCBCSCTTH
T ss_pred             ---HHh--CHHHHHHHHHcCCCCCHHHHHHCCCcceecCCHHH
Confidence               111  22333445555678999999999999999976544

>1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli} SCOP: c.14.1.3 PDB: 1ef9_A*

Probab=98.13  E-value=8.7e-06  Score=65.73  Aligned_cols=100  Identities=11%  Similarity=0.113  Sum_probs=70.2

Q ss_pred             HHHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHH
Q 031001           35 AYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIE  114 (167)
Q Consensus        35 g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~  114 (167)
                      ...++..|..++.||.+.+.|.|.+.|.-++++|  +-|++.++++|.+-...++    -..+....            .
T Consensus        85 ~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~G----l~p~~g~~------------~  146 (261)
T 1ef8_A           85 LRQITRMIQKFPKPIISMVEGSVWGGAFEMIMSS--DLIIAASTSTFSMTPVNLG----VPYNLVGI------------H  146 (261)
T ss_dssp             HHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHS--SEEEEETTCEEECCHHHHT----CCCCHHHH------------H
T ss_pred             HHHHHHHHHhCCCCEEEEECCEEEeHhHHHHHhC--CEEEecCCCEEeCchhccC----CCCCccHH------------H
Confidence            4577888999999999999999999999999999  5799999998766333222    11111000            0


Q ss_pred             HHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCC
Q 031001          115 LLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDS  154 (167)
Q Consensus       115 ~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~  154 (167)
                      .+.+..  ....-.+++-....++++||+++||||+|+++
T Consensus       147 ~l~r~v--G~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~  184 (261)
T 1ef8_A          147 NLTRDA--GFHIVKELIFTASPITAQRALAVGILNHVVEV  184 (261)
T ss_dssp             TTSSSS--CHHHHHHHHHHCCCEEHHHHHHTTSCSEEECH
T ss_pred             HHHHHh--CHHHHHHHHHcCCccCHHHHHHCCCcccccCH
Confidence            011111  23334455555778999999999999999854

>3oc7_A Enoyl-COA hydratase; seattle structural genomics center for infectious disease, S non-pathogenic mycobacterium species, ortholog; 1.50A {Mycobacterium avium} SCOP: c.14.1.0

Probab=98.12  E-value=1.3e-05  Score=64.94  Aligned_cols=96  Identities=18%  Similarity=0.093  Sum_probs=68.5

Q ss_pred             HHHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHH
Q 031001           35 AYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIE  114 (167)
Q Consensus        35 g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~  114 (167)
                      ...++..|..++.||.+.+.|.|.+.|.-++++|  +-|++.++++|.+-...++..-+-..-      .          
T Consensus        97 ~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalac--D~~ia~~~a~f~~pe~~~Gl~p~~g~~------~----------  158 (267)
T 3oc7_A           97 MAALMRAIVESRLPVIAAIDGHVRAGGFGLVGAC--DIAVAGPRSSFALTEARIGVAPAIISL------T----------  158 (267)
T ss_dssp             HHHHHHHHHHCSSCEEEEECSEEETTHHHHHHHS--SEEEECTTCEEECCGGGGTCCCTTTHH------H----------
T ss_pred             HHHHHHHHHhCCCCEEEEEcCeecccchHHHHHC--CEEEEcCCCEEeCcccccCCCcchhHH------H----------
Confidence            3457778889999999999999999999999999  579999999887644332221111100      0          


Q ss_pred             HHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEE
Q 031001          115 LLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKI  151 (167)
Q Consensus       115 ~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I  151 (167)
                      .+. +  .....-.+++-....++|+||+++||||+|
T Consensus       159 ~l~-~--vG~~~A~~l~ltg~~~~a~eA~~~GLv~~v  192 (267)
T 3oc7_A          159 LLP-K--LSARAAARYYLTGEKFDARRAEEIGLITMA  192 (267)
T ss_dssp             HTT-T--SCHHHHHHHHHHCCCBCHHHHHHHTSSSEE
T ss_pred             HHH-H--hCHHHHHHHHHcCCccCHHHHHHCCChhhh
Confidence            011 1  233344555556778999999999999999

>3qk8_A Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 1.60A {Mycobacterium marinum M} SCOP: c.14.1.0 PDB: 3q1t_A

Probab=98.12  E-value=1e-05  Score=65.86  Aligned_cols=97  Identities=10%  Similarity=0.017  Sum_probs=69.1

Q ss_pred             HHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCc--CChhHHHHHHHHHHHHHHHHHH
Q 031001           37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSS--GPVTDMWRKAKDLEANAESYIE  114 (167)
Q Consensus        37 aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~--G~~~dl~~~~~~l~~~~~~~~~  114 (167)
                      .++..|..++.||.+.+.|.|.+.|.-++++|  +-|++.++++|.+-...++..-  |-..-+       -+       
T Consensus        98 ~~~~~l~~~~kPvIAav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~Gl~p~~g~~~~L-------~r-------  161 (272)
T 3qk8_A           98 DLVLNLVNLDKPVVSAIRGPAVGAGLVVALLA--DISVASATAKIIDGHTKLGVAAGDHAAICW-------PL-------  161 (272)
T ss_dssp             HHHHHHHTCCSCEEEEECSEEEHHHHHHHHHS--SEEEEETTCEEECCHHHHTSCSCSSHHHHT-------HH-------
T ss_pred             HHHHHHHhCCCCEEEEECCeeehHHHHHHHhC--CEEEEcCCCEEECchhccCCCCCccHHHHH-------HH-------
Confidence            46777889999999999999999999999999  5799999998877443332221  111111       00       


Q ss_pred             HHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001          115 LLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ  155 (167)
Q Consensus       115 ~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~  155 (167)
                          ..  ....-.+++-....++|+||+++||||+|.+..
T Consensus       162 ----~v--G~~~A~~l~ltg~~~~A~eA~~~GLv~~vv~~~  196 (272)
T 3qk8_A          162 ----LV--GMAKAKYYLLTCETLSGEEAERIGLVSTCVDDD  196 (272)
T ss_dssp             ----HH--CHHHHHHHHHHCCCEEHHHHHHHTSSSEEECGG
T ss_pred             ----Hh--CHHHHHHHHHcCCCCCHHHHHHCCCCcEeeCHh
Confidence                11  122233445557789999999999999998753

>4fzw_A 2,3-dehydroadipyl-COA hydratase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli}

Probab=98.12  E-value=1.8e-05  Score=64.00  Aligned_cols=100  Identities=16%  Similarity=0.090  Sum_probs=70.7

Q ss_pred             HHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHH
Q 031001           36 YAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIEL  115 (167)
Q Consensus        36 ~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~  115 (167)
                      ..++..|..++.||.+.+.|.|.+.|.-++++|  +-|++.++++|.+-...++..-+-. -..    .|-         
T Consensus        85 ~~~~~~l~~~~kPvIAav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~Gl~p~~g-~~~----~l~---------  148 (258)
T 4fzw_A           85 PQLWARLQAFNKPLIAAVNGYALGAGCELALLC--DVVVAGENARFGLPEITLGIMPGAG-GTQ----RLI---------  148 (258)
T ss_dssp             HHHHHHHHTCCSCEEEEECSEEETHHHHHHHHS--SEEEEETTCEEECCGGGGTCCCCSS-HHH----HHH---------
T ss_pred             HHHHHHHHHCCCCEEEEEcCcceeeeeEeeccc--ceEEECCCCEEECcccCCCcCCCch-HHH----HHH---------
Confidence            467888999999999999999999999999999  5799999999877444433221111 100    010         


Q ss_pred             HHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001          116 LAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ  155 (167)
Q Consensus       116 ~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~  155 (167)
                        +..  ....-.+++-....++++||+++||||+|+++.
T Consensus       149 --r~v--G~~~A~~llltg~~i~a~eA~~~GLv~~vv~~~  184 (258)
T 4fzw_A          149 --RSV--GKSLASKMVLSGESITAQQAQQAGLVSDVFPSD  184 (258)
T ss_dssp             --HHH--CHHHHHHHHHHCCCEEHHHHHHHTSCSEEECTT
T ss_pred             --HHh--CHHHHHHHHHcCCcCcHHHHHHCCCeeEEeCch
Confidence              111  122234445557789999999999999999764

>4fzw_C 1,2-epoxyphenylacetyl-COA isomerase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli}

Probab=98.12  E-value=1.9e-05  Score=64.42  Aligned_cols=99  Identities=14%  Similarity=0.068  Sum_probs=69.6

Q ss_pred             HHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHH
Q 031001           37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELL  116 (167)
Q Consensus        37 aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~  116 (167)
                      .++..|..++.||.+.+.|.|.+.|.-|+++|  +-|++.++++|.+-...++..-+-. -.    ..|-+         
T Consensus       102 ~l~~~l~~~~kPvIAav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~Gl~p~~g-~~----~~L~r---------  165 (274)
T 4fzw_C          102 PLVRRLAKLPKPVICAVNGVAAGAGATLALGG--DIVIAARSAKFVMAFSKLGLIPDCG-GT----WLLPR---------  165 (274)
T ss_dssp             HHHHHHHHCSSCEEEEECSCEETHHHHHHHTS--SEEEEETTCEEECCGGGTTCCCTTT-HH----HHHHH---------
T ss_pred             HHHHHHHHCCCCEEEEECCceeecCceeeecc--ceEEECCCCEEECcccCcccCCCcc-HH----HHHHH---------
Confidence            57778889999999999999999999999999  5799999999877544433221111 00    01111         


Q ss_pred             HHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001          117 AKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ  155 (167)
Q Consensus       117 a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~  155 (167)
                        ..  ....-.+++-....++|+||+++||||+|.++.
T Consensus       166 --~v--G~~~A~~llltg~~i~A~eA~~~GLv~~vv~~~  200 (274)
T 4fzw_C          166 --VA--GRARAMGLALLGNQLSAEQAHEWGMIWQVVDDE  200 (274)
T ss_dssp             --HT--CHHHHHHHHHHCCCEEHHHHHHTTSSSEEECGG
T ss_pred             --Hh--hHHHHHHHHHhCCcCCHHHHHHCCCceEEeChH
Confidence              11  122233444456789999999999999998753

>3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium smegmatis} PDB: 3njb_A

Probab=98.12  E-value=1.1e-05  Score=67.54  Aligned_cols=96  Identities=9%  Similarity=-0.008  Sum_probs=70.5

Q ss_pred             HHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHH
Q 031001           36 YAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIEL  115 (167)
Q Consensus        36 ~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~  115 (167)
                      ..++..|..++.||.+.+.|.|.+.|+-|+++|  +-|++.++++|.+-...++..-+..  .      +          
T Consensus       147 ~~~~~~l~~~~kPvIAaV~G~a~GgG~~Lalac--D~rias~~a~f~~pe~~lG~~P~~g--~------l----------  206 (333)
T 3njd_A          147 VRGFASLMHCDKPTVVKIHGYCVAGGTDIALHA--DQVIAAADAKIGYPPMRVWGVPAAG--L------W----------  206 (333)
T ss_dssp             HHHHTHHHHSSSCEEEEECSEEETHHHHHHTTS--SEEEECTTCEEECGGGGTTCCCTTC--C------H----------
T ss_pred             HHHHHHHHhCCCCEEEEECCEEeHHHHHHHHhC--CEEEECCCCeeechhhceeccCHHH--H------H----------
Confidence            345677888999999999999999999999999  5799999998877443322221111  0      1          


Q ss_pred             HHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCC
Q 031001          116 LAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDS  154 (167)
Q Consensus       116 ~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~  154 (167)
                       .+..  ......+++-....++|+||+++||||+|++.
T Consensus       207 -~~~v--G~~~A~ellltG~~i~A~eA~~~GLV~~vv~~  242 (333)
T 3njd_A          207 -AHRL--GDQRAKRLLFTGDCITGAQAAEWGLAVEAPDP  242 (333)
T ss_dssp             -HHHH--CHHHHHHHHTTCCEEEHHHHHHTTSSSBCCCG
T ss_pred             -HHHH--HHHHHHHHHhcCCCCCHHHHHHCCCccEecCh
Confidence             1112  23445566777888999999999999999865

>1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A {Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A

Probab=98.10  E-value=2.3e-05  Score=63.34  Aligned_cols=98  Identities=10%  Similarity=0.049  Sum_probs=67.6

Q ss_pred             HHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceee-ecccccCCcCChhHHHHHHHHHHHHHHHHHH
Q 031001           36 YAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKL-YLPVVGRSSGPVTDMWRKAKDLEANAESYIE  114 (167)
Q Consensus        36 ~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~mi-H~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~  114 (167)
                      ..++..|..++.||.+.+.|.|.+ |.-++++|  +-|++.++++|.+ -...++..-+-..-     .           
T Consensus        98 ~~~~~~l~~~~kPvIAav~G~a~G-G~~Lalac--D~ria~~~a~f~~~pe~~lGl~p~~g~~-----~-----------  158 (257)
T 1szo_A           98 QRLLNNLLSIEVPVIAAVNGPVTN-APEIPVMS--DIVLAAESATFQDGPHFPSGIVPGDGAH-----V-----------  158 (257)
T ss_dssp             HHHHHHHHHCCSCEEEEECSCBCS-STHHHHTS--SEEEEETTCEEECTTSGGGTCCCTTTHH-----H-----------
T ss_pred             HHHHHHHHcCCCcEEEEECCchHH-HHHHHHHC--CEEEEeCCCEEecCcccccccCCCccHH-----H-----------
Confidence            456778889999999999999994 88888888  5899999998876 33332221111100     0           


Q ss_pred             HHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCC
Q 031001          115 LLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDS  154 (167)
Q Consensus       115 ~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~  154 (167)
                      .+.+..|  ...-.+++-....++++||+++||||+|+++
T Consensus       159 ~l~r~vG--~~~A~~llltG~~~~A~eA~~~GLv~~vv~~  196 (257)
T 1szo_A          159 VWPHVLG--SNRGRYFLLTGQELDARTALDYGAVNEVLSE  196 (257)
T ss_dssp             HHHHHHC--HHHHHHHHHTTCEEEHHHHHHHTSCSEEECH
T ss_pred             HHHHHcC--HHHHHHHHHcCCCCCHHHHHHCCCceEEeCh
Confidence            0111122  2334556666788999999999999999854

>3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS, fatty acid metaboli metabolism, lyase, structural genomics; 1.80A {Mycobacterium tuberculosis} PDB: 3q0j_A* 3pzk_A 3q0g_A*

Probab=98.09  E-value=1.3e-05  Score=65.66  Aligned_cols=95  Identities=17%  Similarity=0.149  Sum_probs=68.2

Q ss_pred             HHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCc--CChhHHHHHHHHHHHHHHHHHHHH
Q 031001           39 ADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSS--GPVTDMWRKAKDLEANAESYIELL  116 (167)
Q Consensus        39 ~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~--G~~~dl~~~~~~l~~~~~~~~~~~  116 (167)
                      +..|..++.||.+.+.|.|.+.|.-|+++|  +-|++.++++|.+-...++..-  |-..-+                  
T Consensus       108 ~~~l~~~~kPvIAav~G~a~GgG~~Lalac--D~ria~~~a~f~~pe~~lGl~p~~g~~~~L------------------  167 (278)
T 3h81_A          108 WGKLAAVRTPTIAAVAGYALGGGCELAMMC--DVLIAADTAKFGQPEIKLGVLPGMGGSQRL------------------  167 (278)
T ss_dssp             GHHHHTCCSCEEEEECBEEETHHHHHHHHS--SEEEEETTCEEECGGGGGTCCCCSSHHHHH------------------
T ss_pred             HHHHHhCCCCEEEEECCeeehHHHHHHHHC--CEEEEcCCCEEECchhhcCcCCCccHHHHH------------------
Confidence            567888999999999999999999999999  5799999998877544433221  211111                  


Q ss_pred             HHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001          117 AKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ  155 (167)
Q Consensus       117 a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~  155 (167)
                      .+..|  ...-.+++-....++|+||+++||||+|++..
T Consensus       168 ~r~vG--~~~A~~l~ltG~~~~A~eA~~~GLv~~vv~~~  204 (278)
T 3h81_A          168 TRAIG--KAKAMDLILTGRTMDAAEAERSGLVSRVVPAD  204 (278)
T ss_dssp             HHHHC--HHHHHHHHHHCCCEEHHHHHHHTSCSEEECGG
T ss_pred             HHHhC--HHHHHHHHHhCCCcCHHHHHHCCCccEEeChh
Confidence            11111  22334445556779999999999999998754

>1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET: BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A* 1nzy_B*

Probab=98.07  E-value=2.3e-05  Score=63.56  Aligned_cols=97  Identities=11%  Similarity=0.098  Sum_probs=67.5

Q ss_pred             HHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCc--CChhHHHHHHHHHHHHHHHHH
Q 031001           36 YAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSS--GPVTDMWRKAKDLEANAESYI  113 (167)
Q Consensus        36 ~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~--G~~~dl~~~~~~l~~~~~~~~  113 (167)
                      ..++..|..++.||.+.+.|.|.+.|.-++++|  +-|++.++++|.+-...++..-  |...-+       .+   .  
T Consensus        90 ~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~c--D~ria~~~a~f~~pe~~~Gl~p~~g~~~~l-------~~---~--  155 (269)
T 1nzy_A           90 HQMIHKIIRVKRPVLAAINGVAAGGGLGISLAS--DMAICADSAKFVCAWHTIGIGNDTATSYSL-------AR---I--  155 (269)
T ss_dssp             HHHHHHHHHCSSCEEEEECSEEETHHHHHHHHS--SEEEEETTCEEECCHHHHTCCCCTTHHHHH-------HH---H--
T ss_pred             HHHHHHHHhCCCCEEEEECCeeecHHHHHHHhC--CEEEecCCCEEeCcccccCCCCCccHHHHH-------HH---H--
Confidence            456677889999999999999999999999999  5799999998876443322211  111111       11   0  


Q ss_pred             HHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCC
Q 031001          114 ELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDS  154 (167)
Q Consensus       114 ~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~  154 (167)
                            .|  ...-.+++-....++++||+++||||+|.++
T Consensus       156 ------vG--~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~  188 (269)
T 1nzy_A          156 ------VG--MRRAMELMLTNRTLYPEEAKDWGLVSRVYPK  188 (269)
T ss_dssp             ------HH--HHHHHHHHHHCCCBCHHHHHHHTSCSCEECH
T ss_pred             ------hh--HHHHHHHHHcCCCCCHHHHHHCCCccEeeCH
Confidence                  01  1122334445667999999999999999864

>3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Streptomyces avermitilis}

Probab=98.07  E-value=1.9e-05  Score=64.84  Aligned_cols=97  Identities=12%  Similarity=0.160  Sum_probs=69.4

Q ss_pred             HHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeec-CCceeeecccccCCc--CChhHHHHHHHHHHHHHHHH
Q 031001           36 YAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQP-NSSTKLYLPVVGRSS--GPVTDMWRKAKDLEANAESY  112 (167)
Q Consensus        36 ~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p-~s~~miH~p~~~~~~--G~~~dl~~~~~~l~~~~~~~  112 (167)
                      ..++..|..++.||.+.+.|.|.+.|.-++++|  +-|++.+ +++|.+-...++..-  |-..-+              
T Consensus        96 ~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalac--D~ria~~~~a~f~~pe~~lGl~p~~g~~~~L--------------  159 (287)
T 3gkb_A           96 QAVGELIRHQPQVTIVKLAGKARGGGAEFVAAA--DMAFAAAETAGLGQIEALMGIIPGGGGTQYL--------------  159 (287)
T ss_dssp             HHHHHHHHHCSSEEEEEECSEEETHHHHHHHHS--SEEEEETTTCEEECGGGGGTSCCCSSHHHHH--------------
T ss_pred             HHHHHHHHhCCCCEEEEECCeeehHHHHHHHHC--CEEEEeCCCcEEECcccccCCCCCchHHHHH--------------
Confidence            357788999999999999999999999999999  5799999 998877443332221  111111              


Q ss_pred             HHHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCC
Q 031001          113 IELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDS  154 (167)
Q Consensus       113 ~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~  154 (167)
                          .+..|  ...-.+++-....++|+||+++||||+|+++
T Consensus       160 ----~r~vG--~~~A~ellltG~~i~A~eA~~~GLV~~vv~~  195 (287)
T 3gkb_A          160 ----RGRVG--RNRALEVVLTADLFDAETAASYGWINRALPA  195 (287)
T ss_dssp             ----HHHHC--HHHHHHHHHHCCCEEHHHHHHHTSSSEEECH
T ss_pred             ----HHHhC--HHHHHHHHHcCCCCCHHHHHHCCCCcEEeCh
Confidence                11111  2223444555677999999999999999865

>1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC; 2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A* 1dub_A* 1ey3_A* 2hw5_A*

Probab=98.06  E-value=1.1e-05  Score=65.27  Aligned_cols=95  Identities=18%  Similarity=0.157  Sum_probs=67.8

Q ss_pred             HHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCC--cCChhHHHHHHHHHHHHHHHHHHHH
Q 031001           39 ADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRS--SGPVTDMWRKAKDLEANAESYIELL  116 (167)
Q Consensus        39 ~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~--~G~~~dl~~~~~~l~~~~~~~~~~~  116 (167)
                      +..|..++.||.+.+.|.|.+.|.-++++|  +-|++.++++|.+....++..  .|-..-+                  
T Consensus        90 ~~~l~~~~kPvIAav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~Gl~p~~g~~~~l------------------  149 (260)
T 1mj3_A           90 WDHITRIKKPVIAAVNGYALGGGCELAMMC--DIIYAGEKAQFGQPEILLGTIPGAGGTQRL------------------  149 (260)
T ss_dssp             GGGGGGCSSCEEEEECSEEETHHHHHHHHS--SEEEEETTCEEECGGGGGTCCCCSSTTTHH------------------
T ss_pred             HHHHHhCCCCEEEEECCEEEeHHHHHHHhC--CEEEEcCCCEEeCcccccCCCCCccHHHHH------------------
Confidence            456677889999999999999999999999  579999999988765543322  1222111                  


Q ss_pred             HHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001          117 AKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ  155 (167)
Q Consensus       117 a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~  155 (167)
                      .+..|  ...-.+++-....++|+||+++||||+|.+..
T Consensus       150 ~r~vG--~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~  186 (260)
T 1mj3_A          150 TRAVG--KSLAMEMVLTGDRISAQDAKQAGLVSKIFPVE  186 (260)
T ss_dssp             HHHHC--HHHHHHHHHHCCCEEHHHHHHHTSCSEEECTT
T ss_pred             HHHhC--HHHHHHHHHcCCcCCHHHHHHcCCccEEeChH
Confidence            11111  22334445556788999999999999998763

>3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Mycobacterium abscessus}

Probab=98.05  E-value=1.5e-05  Score=64.50  Aligned_cols=96  Identities=16%  Similarity=0.189  Sum_probs=69.2

Q ss_pred             HHHHH-h--hcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCc--CChhHHHHHHHHHHHHHHHH
Q 031001           38 IADAM-A--YCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSS--GPVTDMWRKAKDLEANAESY  112 (167)
Q Consensus        38 I~~~i-~--~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~--G~~~dl~~~~~~l~~~~~~~  112 (167)
                      ++..| .  .++.||.+.+.|.|.+.|.-++++|  +-|++.++++|.+-...++..-  |...-+              
T Consensus        91 ~~~~l~~~~~~~kPvIAav~G~a~GgG~~lalac--D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l--------------  154 (265)
T 3rsi_A           91 IGKGLLLSHTLTKPLIAAVNGACLGGGCEMLQQT--DIRVSDEHATFGLPEVQRGLVPGAGSMVRL--------------  154 (265)
T ss_dssp             HHHHTTSSCCCSSCEEEEECSCEETHHHHHHTTC--SEEEEETTCEEECGGGGGTCCCTTTHHHHH--------------
T ss_pred             HHHHHHHhcCCCCCEEEEECCeeeHHHHHHHHHC--CEEEecCCCEEECchhccCCCCCccHHHHH--------------
Confidence            77778 7  8899999999999999999999999  5799999998876444332221  111111              


Q ss_pred             HHHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001          113 IELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ  155 (167)
Q Consensus       113 ~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~  155 (167)
                          .+..  ....-.+++-....++|+||+++||||+|++..
T Consensus       155 ----~~~v--G~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~  191 (265)
T 3rsi_A          155 ----KRQI--PYTKAMEMILTGEPLTAFEAYHFGLVGHVVPAG  191 (265)
T ss_dssp             ----HHHS--CHHHHHHHHHHCCCEEHHHHHHTTSCSEEESTT
T ss_pred             ----HHHh--CHHHHHHHHHcCCCCCHHHHHHCCCccEecChh
Confidence                1111  223334455567789999999999999999764

>3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.45A {Mycobacterium avium subsp}

Probab=98.04  E-value=1.7e-05  Score=64.79  Aligned_cols=95  Identities=19%  Similarity=0.129  Sum_probs=68.4

Q ss_pred             HHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCc--CChhHHHHHHHHHHHHHHHHH
Q 031001           36 YAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSS--GPVTDMWRKAKDLEANAESYI  113 (167)
Q Consensus        36 ~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~--G~~~dl~~~~~~l~~~~~~~~  113 (167)
                      ..++..|..++.||.+.+.|.|.+.|.-++++|  +-|++.++++|.+-...++..-  |...-                
T Consensus       112 ~~~~~~l~~~~kPvIAav~G~a~GgG~~Lalac--D~ria~~~a~f~~pe~~~Gl~p~~g~~~~----------------  173 (276)
T 3rrv_A          112 REIVLGMARCRIPVVAAVNGPAVGLGCSLVALS--DIVYIAENAYLADPHVQVGLVAADGGPLT----------------  173 (276)
T ss_dssp             HHHHHHHHHCSSCEEEEECSCEETHHHHHHHTS--SEEEEETTCEEECCHHHHTCCCCSSHHHH----------------
T ss_pred             HHHHHHHHhCCCCEEEEECceeeHHHHHHHHHC--CEEEEeCCCEEECchhccCcCCCccHHHH----------------
Confidence            456778889999999999999999999999999  5799999998776333322111  11110                


Q ss_pred             HHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEe
Q 031001          114 ELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKII  152 (167)
Q Consensus       114 ~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~  152 (167)
                        +.+..  ....-.+++-....++|+||+++||||+|.
T Consensus       174 --L~r~v--G~~~A~ellltG~~i~A~eA~~~GLv~~vv  208 (276)
T 3rrv_A          174 --WPLHI--SLLLAKEYALTGTRISAQRAVELGLANHVA  208 (276)
T ss_dssp             --GGGTS--CHHHHHHHHHHCCCEEHHHHHHHTSCSEEE
T ss_pred             --HHHHh--CHHHHHHHHHcCCCCCHHHHHHcCCHHHHH
Confidence              11111  233344555567889999999999999998

>3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.95A {Escherichia coli} PDB: 3t88_A 4elx_A 4elw_A 4els_A 3h02_A 2iex_A

Probab=98.04  E-value=1.5e-05  Score=65.50  Aligned_cols=98  Identities=16%  Similarity=0.153  Sum_probs=69.8

Q ss_pred             HHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCc-C-ChhHHHHHHHHHHHHHHHHH
Q 031001           36 YAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSS-G-PVTDMWRKAKDLEANAESYI  113 (167)
Q Consensus        36 ~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~-G-~~~dl~~~~~~l~~~~~~~~  113 (167)
                      ..++..|..++.||.+.+.|.|.+.|.-++++|  +-|++.++++|.+-.+.++... + -..-+.              
T Consensus       113 ~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~Gl~~~~~g~~~L~--------------  176 (289)
T 3t89_A          113 LDFQRQIRTCPKPVVAMVAGYSIGGGHVLHMMC--DLTIAADNAIFGQTGPKVGSFDGGWGASYMA--------------  176 (289)
T ss_dssp             HHHHHHHHHCSSCEEEEECSEEETHHHHHHHHS--SEEEEETTCEEECCHHHHTCCCCSTTTHHHH--------------
T ss_pred             HHHHHHHHcCCCCEEEEECCEeehHHHHHHHhC--CEEEEeCCCEEeccccccCCCCCchHHHHHH--------------
Confidence            457788999999999999999999999999999  5799999999877544433111 1 111111              


Q ss_pred             HHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001          114 ELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ  155 (167)
Q Consensus       114 ~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~  155 (167)
                          +..  ....-.+++-....++|+||+++||||+|++..
T Consensus       177 ----r~v--G~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~  212 (289)
T 3t89_A          177 ----RIV--GQKKAREIWFLCRQYDAKQALDMGLVNTVVPLA  212 (289)
T ss_dssp             ----HHH--CHHHHHHHHHHCCCEEHHHHHHHTSSSEEECGG
T ss_pred             ----Hhc--CHHHHHHHHHcCCcccHHHHHHCCCceEeeCHH
Confidence                111  122233444456679999999999999998753

>3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB: 3p85_A* 3qyr_A

Probab=98.01  E-value=4e-06  Score=67.84  Aligned_cols=95  Identities=15%  Similarity=0.078  Sum_probs=66.4

Q ss_pred             HHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCc--CChhHHHHHHHHHHHHHHHHHHHH
Q 031001           39 ADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSS--GPVTDMWRKAKDLEANAESYIELL  116 (167)
Q Consensus        39 ~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~--G~~~dl~~~~~~l~~~~~~~~~~~  116 (167)
                      ...+..++.||.+.+.|.|.+.|.-++++|  +-|++.++++|.+....++..-  |-..-+                  
T Consensus        85 ~~~l~~~~kPvIAav~G~a~GgG~~lalac--D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L------------------  144 (256)
T 3pe8_A           85 SPKWPDMTKPVIGAINGAAVTGGLELALYC--DILIASENAKFADTHARVGLMPTWGLSVRL------------------  144 (256)
T ss_dssp             CCCCCCCSSCEEEEECSEEETHHHHHHHHS--SEEEEETTCEEECCHHHHTCCCCSSHHHHH------------------
T ss_pred             HHHHHhCCCCEEEEECCeeechHHHHHHhC--CEEEEcCCCEEECchhhhCCCCcccHHHHH------------------
Confidence            345667889999999999999999999999  5799999999877443332221  211111                  


Q ss_pred             HHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001          117 AKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ  155 (167)
Q Consensus       117 a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~  155 (167)
                      .+..|  ...-.+++-....++++||+++||||+|++..
T Consensus       145 ~r~vG--~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~  181 (256)
T 3pe8_A          145 PQKVG--VGLARRMSLTGDYLSAQDALRAGLVTEVVAHD  181 (256)
T ss_dssp             HHHHC--HHHHHHHHHHCCCEEHHHHHHHTSCSCEECGG
T ss_pred             HHhcC--HHHHHHHHHcCCCCCHHHHHHCCCCeEEeCHh
Confidence            11111  22333445556779999999999999998753

>4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase; 2.04A {Synechocystis SP}

Probab=97.99  E-value=1.5e-05  Score=65.01  Aligned_cols=98  Identities=15%  Similarity=0.089  Sum_probs=69.6

Q ss_pred             HHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCc--CChhHHHHHHHHHHHHHHHHH
Q 031001           36 YAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSS--GPVTDMWRKAKDLEANAESYI  113 (167)
Q Consensus        36 ~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~--G~~~dl~~~~~~l~~~~~~~~  113 (167)
                      ..++..|..++.||.+.+.|.|.+.|.-++++|  +-|++.++++|.+-.+.++...  |-..-+       -+      
T Consensus        99 ~~~~~~l~~~~kPvIAav~G~a~GgG~~lalac--D~~ia~~~a~f~~pe~~~Gl~p~~~g~~~L-------~r------  163 (275)
T 4eml_A           99 LDLQRLIRSMPKVVIALVAGYAIGGGHVLHLVC--DLTIAADNAIFGQTGPKVGSFDGGFGSSYL-------AR------  163 (275)
T ss_dssp             HHHHHHHHHSSSEEEEEECSEEETHHHHHHHHS--SEEEEETTCEEECCHHHHTCCCCSTTTHHH-------HH------
T ss_pred             HHHHHHHHhCCCCEEEEECCeeehHHHHHHHhC--CEEEEcCCCEEECcccccCCCCCccHHHHH-------HH------
Confidence            467788999999999999999999999999999  5799999998877443333111  111111       11      


Q ss_pred             HHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001          114 ELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ  155 (167)
Q Consensus       114 ~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~  155 (167)
                           ..|  ...-.+++-....++|+||+++||||+|.+..
T Consensus       164 -----~vG--~~~A~~llltg~~i~A~eA~~~GLv~~vv~~~  198 (275)
T 4eml_A          164 -----IVG--QKKAREIWYLCRQYSAQEAERMGMVNTVVPVD  198 (275)
T ss_dssp             -----HHC--HHHHHHHHHHCCCEEHHHHHHHTSCSEEECGG
T ss_pred             -----HhH--HHHHHHHHHhCCCcCHHHHHHcCCccEeeCHH
Confidence                 111  12223444456679999999999999998753

>3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A 1rjm_A* 1rjn_A* 1q52_A 1q51_A

Probab=97.97  E-value=3.8e-05  Score=64.55  Aligned_cols=97  Identities=11%  Similarity=0.027  Sum_probs=69.5

Q ss_pred             HHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeee-cCCceeeecccccCCc--CChhHHHHHHHHHHHHHHHHH
Q 031001           37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQ-PNSSTKLYLPVVGRSS--GPVTDMWRKAKDLEANAESYI  113 (167)
Q Consensus        37 aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~-p~s~~miH~p~~~~~~--G~~~dl~~~~~~l~~~~~~~~  113 (167)
                      .++..|+.++.||.+.+.|.|.+.|.-|+++|  +-|++. ++++|.+-...++..-  |-..-+.   +.+-       
T Consensus       158 ~~~~~i~~~~kPvIAaV~G~A~GgG~~Lalac--D~riAs~~~A~f~~pe~~lGl~p~~gg~~~L~---r~vG-------  225 (334)
T 3t8b_A          158 EVQRLIRFMPKVVICLVNGWAAGGGHSLHVVC--DLTLASREYARFKQTDADVGSFDGGYGSAYLA---RQVG-------  225 (334)
T ss_dssp             HHHHHHHHSSSEEEEEECSEEETHHHHHHHHS--SEEEEETTTCEEECCCTTCSSSSCCSCHHHHH---HHHH-------
T ss_pred             HHHHHHHhCCCCEEEEECCccccCcchhHhhC--CEEEEeCCCcEEECcccccCCCCcccHHHHHH---HHhh-------
Confidence            56778999999999999999999999999999  579999 9999887555443221  2222221   1010       


Q ss_pred             HHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001          114 ELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ  155 (167)
Q Consensus       114 ~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~  155 (167)
                                .....+++-....++|+||+++||||+|++..
T Consensus       226 ----------~~~A~ellltG~~i~A~eA~~~GLV~~vv~~~  257 (334)
T 3t8b_A          226 ----------QKFAREIFFLGRTYTAEQMHQMGAVNAVAEHA  257 (334)
T ss_dssp             ----------HHHHHHHHHHCCEEEHHHHHHHTSCSEEECGG
T ss_pred             ----------HHHHHHHHHhCCcCCHHHHHHCCCCcEecCHH
Confidence                      11223344446779999999999999998753

>2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase, crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens} PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E* 2vsu_F* 2vsu_E* 2vsu_C*

Probab=97.97  E-value=1.1e-05  Score=65.76  Aligned_cols=96  Identities=15%  Similarity=0.093  Sum_probs=66.2

Q ss_pred             HHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHHHH
Q 031001           39 ADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAK  118 (167)
Q Consensus        39 ~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a~  118 (167)
                      +..|..++.||.+.+.|.|.+.|.-++++|  +-|++.++++|.+-...++..-+-. -.    .           .+.+
T Consensus        99 ~~~l~~~~kPvIAav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~Gl~p~~g-~~----~-----------~l~r  160 (276)
T 2j5i_A           99 WKLLRMYAKPTIAMVNGWCFGGGFSPLVAC--DLAICADEATFGLSEINWGIPPGNL-VS----K-----------AMAD  160 (276)
T ss_dssp             TTTTTTCSSCEEEEECSCEEGGGHHHHHHS--SEEEEETTCEEECGGGGGTCCCCTT-HH----H-----------HHHH
T ss_pred             HHHHHhCCCCEEEEECCeeehhHHHHHHhC--CEEEEcCCCEEeCcccccCCCCcch-HH----H-----------HHHH
Confidence            344567789999999999999999999999  5799999998876444332211110 00    0           0111


Q ss_pred             HhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCC
Q 031001          119 GTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDS  154 (167)
Q Consensus       119 ~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~  154 (167)
                      ..|  ...-.+++-....++|+||+++||||+|.+.
T Consensus       161 ~vG--~~~A~~l~ltg~~~~A~eA~~~GLv~~vv~~  194 (276)
T 2j5i_A          161 TVG--HRQSLMYIMTGKTFGGQKAAEMGLVNESVPL  194 (276)
T ss_dssp             HSC--HHHHHHHHHHCCEEEHHHHHHHTSSSEEECH
T ss_pred             HhC--HHHHHHHHHhCCcccHHHHHHcCCccEeeCH
Confidence            222  2334455556778999999999999999864

>3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus} SCOP: c.14.1.0

Probab=97.94  E-value=3.5e-05  Score=62.39  Aligned_cols=97  Identities=16%  Similarity=0.099  Sum_probs=67.1

Q ss_pred             HHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCc--CChhHHHHHHHHHHHHHHHHH
Q 031001           36 YAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSS--GPVTDMWRKAKDLEANAESYI  113 (167)
Q Consensus        36 ~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~--G~~~dl~~~~~~l~~~~~~~~  113 (167)
                      ..++..|..++.||.+.+.|.|.+.|.-++++|  +-|++.++++|.+-...++..-  |-..-+.   +.+        
T Consensus        88 ~~~~~~l~~~~kPvIAav~G~a~GgG~~lalac--D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~---r~v--------  154 (265)
T 3qxz_A           88 SPVQPAAFELRTPVIAAVNGHAIGIGMTLALHA--DIRILAEEGRYAIPQVRFGVAPDALAHWTLP---RLV--------  154 (265)
T ss_dssp             CCSSSCGGGSSSCEEEEECSEEETHHHHHHTTS--SEEEEETTCCEECCGGGGTSCCCTTHHHHTH---HHH--------
T ss_pred             HHHHHHHHhCCCCEEEEECCEEehHhHHHHHHC--CEEEEcCCCEEECcccccCcCCCccHHHHHH---HHh--------
Confidence            345667889999999999999999999999999  5799999998877444433221  1111111   000        


Q ss_pred             HHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCC
Q 031001          114 ELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDS  154 (167)
Q Consensus       114 ~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~  154 (167)
                             |  ...-.+++-....++|+||+++||||+|++.
T Consensus       155 -------G--~~~A~~l~ltg~~~~A~eA~~~GLv~~vv~~  186 (265)
T 3qxz_A          155 -------G--TAVAAELLLTGASFSAQRAVETGLANRCLPA  186 (265)
T ss_dssp             -------H--HHHHHHHHHHCCCBCHHHHHHHTSCSEEECH
T ss_pred             -------C--HHHHHHHHHcCCCcCHHHHHHCCCccEeeCH
Confidence                   0  1112333444567899999999999999865

>3m6n_A RPFF protein; enoyl-COA hydratase, lyase; 1.80A {Xanthomonas campestris PV} PDB: 3m6m_A

Probab=97.94  E-value=6e-05  Score=62.34  Aligned_cols=91  Identities=11%  Similarity=0.042  Sum_probs=62.8

Q ss_pred             cCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Q 031001           45 CKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPK  124 (167)
Q Consensus        45 ~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a~~tg~~~  124 (167)
                      ++.||.+.+.|.|.+.|+-++++|  +-|++.++++|.+-...++..-+-.. .    .           .+.+..  ..
T Consensus       139 ~~kPvIAaV~G~a~GgG~~Lalac--D~ria~~~a~f~~pe~~~Gl~p~~g~-~----~-----------~L~r~v--G~  198 (305)
T 3m6n_A          139 ARAHSIALVQGNALGGGFEAALSC--HTIIAEEGVMMGLPEVLFDLFPGMGA-Y----S-----------FMCQRI--SA  198 (305)
T ss_dssp             TTCEEEEEECSCEETHHHHHHHHS--SEEEEETTCEEECGGGGGTCCCCSSH-H----H-----------HHTTTS--CH
T ss_pred             CCCCEEEEECCEeehHHHHHHHhC--CEEEEcCCCEEECchhccCcCCCccH-H----H-----------HHHHHh--cH
Confidence            589999999999999999999999  57999999988774433322111100 0    0           111111  22


Q ss_pred             HHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001          125 EEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ  155 (167)
Q Consensus       125 ~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~  155 (167)
                      ..-.+++-....++|+||+++||||+|+++.
T Consensus       199 ~~A~~llltG~~i~A~eA~~~GLv~~vv~~~  229 (305)
T 3m6n_A          199 HLAQKIMLEGNLYSAEQLLGMGLVDRVVPRG  229 (305)
T ss_dssp             HHHHHHHHHCCEEEHHHHHHHTSCSEEECTT
T ss_pred             HHHHHHHHcCCCCCHHHHHHCCCCCEecChh
Confidence            3334455556789999999999999999763

>3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M}

Probab=97.91  E-value=1.5e-05  Score=65.92  Aligned_cols=96  Identities=14%  Similarity=0.036  Sum_probs=67.2

Q ss_pred             HHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCC--cCChhHHHHHHHHHHHHHHHHHHH
Q 031001           38 IADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRS--SGPVTDMWRKAKDLEANAESYIEL  115 (167)
Q Consensus        38 I~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~--~G~~~dl~~~~~~l~~~~~~~~~~  115 (167)
                      ++..|..++.||.+.+.|.|.+.|.-++++|  +-|++.++++|.+-...++..  .|-..-                  
T Consensus       122 ~~~~l~~~~kPvIAaV~G~a~GgG~~Lalac--D~ria~~~a~f~~pe~~~Gl~p~~g~~~~------------------  181 (298)
T 3qre_A          122 PPHFVTMLRKPVIAAINGPCVGIGLTQALMC--DVRFAAAGAKFAAVFARRGLIAEFGISWI------------------  181 (298)
T ss_dssp             CTTGGGGSSSCEEEEECSCEETHHHHHHHHS--SEEEEETTCEEECCCCHHHHHCTTSHHHH------------------
T ss_pred             HHHHHHhCCCCEEEEECCceeecchHHHhhC--CEEEEcCCCEEECcccccCCCcchhHHHH------------------
Confidence            3456778899999999999999999999999  579999999887633322211  111111                  


Q ss_pred             HHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001          116 LAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ  155 (167)
Q Consensus       116 ~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~  155 (167)
                      +.+..|  ...-.+++-....++|+||+++||||+|++..
T Consensus       182 L~r~vG--~~~A~ellltg~~i~A~eA~~~GLV~~vv~~~  219 (298)
T 3qre_A          182 LPRLTS--WAVALDLLLSGRTFLAEEAAQLGLVKEVVTPE  219 (298)
T ss_dssp             HHHHSC--HHHHHHHHHHCCEEEHHHHHHTTSCSEEECGG
T ss_pred             HHHhcC--HHHHHHHHHcCCCCCHHHHHHcCCCeEecCHH
Confidence            111122  23344555567789999999999999998653

>3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium abscessus}

Probab=97.90  E-value=4.9e-05  Score=61.47  Aligned_cols=97  Identities=8%  Similarity=-0.055  Sum_probs=68.2

Q ss_pred             HHHH-hhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHHH
Q 031001           39 ADAM-AYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLA  117 (167)
Q Consensus        39 ~~~i-~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a  117 (167)
                      +..| ..++.||.+.+.|.|.+.|+-++++|  +-|++.++++|.+-...++..-+-..-.     .|           .
T Consensus        94 ~~~l~~~~~kPvIAav~G~a~GgG~~lalac--D~~ia~~~a~f~~pe~~~Gl~p~~g~~~-----~l-----------~  155 (265)
T 3swx_A           94 WQVDGRQLSKPLLVAVHGKVLTLGIELALAA--DIVIADETATFAQLEVNRGIYPFGGATI-----RF-----------P  155 (265)
T ss_dssp             TCCSSCCCSSCEEEEECSEEETHHHHHHHHS--SEEEEETTCEEECGGGGGTSCCCSSHHH-----HH-----------H
T ss_pred             HHHHHHhCCCCEEEEEcCeeehHHHHHHHHC--CEEEEcCCCEEECcccccccCCCccHHH-----HH-----------H
Confidence            3445 67789999999999999999999999  5799999998877444433221111000     01           1


Q ss_pred             HHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001          118 KGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ  155 (167)
Q Consensus       118 ~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~  155 (167)
                      +..  ....-.+++-....++|+||+++||||+|+++.
T Consensus       156 r~v--G~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~  191 (265)
T 3swx_A          156 RTA--GWGNAMRWMLTADTFDAVEAHRIGIVQEIVPVG  191 (265)
T ss_dssp             HHH--CHHHHHHHHTTCCCEEHHHHHHTTSCSEEESTT
T ss_pred             HHh--hHHHHHHHHHcCCcCCHHHHHHcCCCCEecChh
Confidence            111  223345566778899999999999999999764

>3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase, PSI-2, protein structure initiative; 1.50A {Streptomyces avermitilis}

Probab=97.90  E-value=2.8e-05  Score=63.94  Aligned_cols=97  Identities=12%  Similarity=0.114  Sum_probs=68.5

Q ss_pred             HHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecC-CceeeecccccCCc--CChhHHHHHHHHHHHHHHHH
Q 031001           36 YAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPN-SSTKLYLPVVGRSS--GPVTDMWRKAKDLEANAESY  112 (167)
Q Consensus        36 ~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~-s~~miH~p~~~~~~--G~~~dl~~~~~~l~~~~~~~  112 (167)
                      ..++..|..++.||.+.+.|.|.+.|.-++++|  +-|++.++ ++|.+-...++..-  |-..-+              
T Consensus        93 ~~~~~~l~~~~kPvIAaV~G~a~GgG~~Lalac--D~ria~~~~a~f~~pe~~lGl~p~~g~~~~L--------------  156 (289)
T 3h0u_A           93 GMLFRKLSQLPAVTIAKLRGRARGAGSEFLLAC--DMRFASRENAILGQPEVGIGAPPGAGAIQHL--------------  156 (289)
T ss_dssp             HHHHHHHHTCSSEEEEEECSEEETHHHHHHHHS--SEEEEETTTCEEECTHHHHTSCCCSSHHHHH--------------
T ss_pred             HHHHHHHHhCCCCEEEEECCEeehhhHHHHHhC--CEEEEeCCCcEEeCchhhcCCCCCccHHHHH--------------
Confidence            457788999999999999999999999999999  57999998 98776333322211  111111              


Q ss_pred             HHHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCC
Q 031001          113 IELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDS  154 (167)
Q Consensus       113 ~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~  154 (167)
                          .+..|  ...-.+++-....++|+||+++||||+|+++
T Consensus       157 ----~r~vG--~~~A~ellltG~~i~A~eA~~~GLV~~vv~~  192 (289)
T 3h0u_A          157 ----TRLLG--RGRALEAVLTSSDFDADLAERYGWVNRAVPD  192 (289)
T ss_dssp             ----HHHHC--HHHHHHHHHHCCCEEHHHHHHHTSSSEEECH
T ss_pred             ----HHHhC--HHHHHHHHHcCCCCCHHHHHHCCCccEecCH
Confidence                11111  2223444545677999999999999999864

>3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Pseudomonas aeruginosa}

Probab=97.89  E-value=5.3e-05  Score=61.06  Aligned_cols=95  Identities=9%  Similarity=0.057  Sum_probs=67.8

Q ss_pred             HHHH-hhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCC--cCChhHHHHHHHHHHHHHHHHHHH
Q 031001           39 ADAM-AYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRS--SGPVTDMWRKAKDLEANAESYIEL  115 (167)
Q Consensus        39 ~~~i-~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~--~G~~~dl~~~~~~l~~~~~~~~~~  115 (167)
                      +..| ..++.||.+.+.|.|.+.|.-++++|  +-|++.++++|.+-...++..  .|-..-+.                
T Consensus        97 ~~~l~~~~~kPvIAav~G~a~GgG~~lalac--D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~----------------  158 (258)
T 3lao_A           97 WGVVQPRRSKPLVVAVQGTCWTAGIELMLNA--DIAVAARGTRFAHLEVLRGIPPLGGSTVRFP----------------  158 (258)
T ss_dssp             TSCSSSCCCSCEEEEECSEEETHHHHHHHTS--SEEEEETTCEEECGGGGTCCCSSCCCCSHHH----------------
T ss_pred             HHHHHHhCCCCEEEEECCEeEhHHHHHHHhC--CEEEEcCCCEEeCcccccCCCCCccHHHHHH----------------
Confidence            4556 77889999999999999999999999  579999999887744433221  12222111                


Q ss_pred             HHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001          116 LAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ  155 (167)
Q Consensus       116 ~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~  155 (167)
                        +..  ....-.+++-....++|+||+++||||+|.++.
T Consensus       159 --r~v--G~~~A~~l~ltg~~~~a~eA~~~Glv~~vv~~~  194 (258)
T 3lao_A          159 --RAA--GWTDAMRYILTGDEFDADEALRMRLLTEVVEPG  194 (258)
T ss_dssp             --HHH--CHHHHHHHHTTCCCEEHHHHHHTTSCSEEECTT
T ss_pred             --HHh--CHHHHHHHHHcCCCCCHHHHHHcCCCcEeeChh
Confidence              111  122334556667789999999999999999764

>3t3w_A Enoyl-COA hydratase; ssgcid, structural genomics, seattle ST genomics center for infectious disease, lyase; 1.80A {Mycobacterium thermoresistibile} PDB: 3ome_A

Probab=97.87  E-value=3.2e-05  Score=63.16  Aligned_cols=97  Identities=7%  Similarity=-0.042  Sum_probs=67.5

Q ss_pred             HHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHH
Q 031001           37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELL  116 (167)
Q Consensus        37 aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~  116 (167)
                      .++..|..++.||.+.+.|.|.+.|.-++++|  +-|++.++++|.+-...++. .|...-..  .+             
T Consensus       108 ~~~~~l~~~~kPvIAav~G~a~GgG~~Lalac--D~ria~~~a~f~~pe~~~Gl-~~~~~~~~--~~-------------  169 (279)
T 3t3w_A          108 EYSLRWRNVPKPSIAAVQGRCISGGLLLCWPC--DLIIAAEDALFSDPVVLMDI-GGVEYHGH--TW-------------  169 (279)
T ss_dssp             HHHHHHHHCSSCEEEEECSEEEGGGHHHHTTS--SEEEEETTCEEECCGGGGTC-SSCSSCCH--HH-------------
T ss_pred             HHHHHHHhCCCCEEEEECCeEhHHHHHHHHhC--CEEEecCCCEEeCcHHhcCC-CCchHHHH--Hh-------------
Confidence            45677889999999999999999999999999  57999999988764433322 11100000  00             


Q ss_pred             HHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001          117 AKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ  155 (167)
Q Consensus       117 a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~  155 (167)
                        ..  ....-.+++-....++|+||+++||||+|.++.
T Consensus       170 --~v--G~~~A~~llltG~~i~A~eA~~~GLv~~vv~~~  204 (279)
T 3t3w_A          170 --EL--GPRKAKEILFTGRAMTAEEVAQTGMVNRVVPRD  204 (279)
T ss_dssp             --HH--CHHHHHHHHHHCCCEEHHHHHHHTSCSEEECGG
T ss_pred             --hc--CHHHHHHHHHcCCccCHHHHHHCCCCcEeeChH
Confidence              01  122233444456689999999999999998653

>3bpt_A 3-hydroxyisobutyryl-COA hydrolase; coenzyme A, beta-hydroxyisobutyryl acid, querceti structural genomics consortium, SGC; HET: QUE; 1.50A {Homo sapiens}

Probab=97.87  E-value=5.1e-05  Score=64.24  Aligned_cols=98  Identities=15%  Similarity=0.136  Sum_probs=68.8

Q ss_pred             HHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHH
Q 031001           37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELL  116 (167)
Q Consensus        37 aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~  116 (167)
                      .++..|..++.||.+.+.|.|.+.|.-|+++|  +-|++.++++|.+-...++..-+-..-     ..           +
T Consensus        93 ~~~~~l~~~~kPvIAav~G~a~GgG~~Lalac--D~ria~~~a~f~~pe~~~Gl~p~~g~~-----~~-----------L  154 (363)
T 3bpt_A           93 MLNNAVGSCQKPYVALIHGITMGGGVGLSVHG--QFRVATEKCLFAMPETAIGLFPDVGGG-----YF-----------L  154 (363)
T ss_dssp             HHHHHHHTCSSCEEEEECSEEETHHHHTTTTS--SEEEECTTCEEECCGGGTTSCCCTTHH-----HH-----------H
T ss_pred             HHHHHHHhCCCCEEEEECCEEehHHHHHHHhC--CEEEEcCCeEEeCCccccCCCCCchHH-----HH-----------H
Confidence            45567889999999999999999999999999  579999999887754443322111100     00           1


Q ss_pred             HHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001          117 AKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ  155 (167)
Q Consensus       117 a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~  155 (167)
                      .+.-|.   .-.+++-....++|+||+++||||+|+++.
T Consensus       155 ~r~~g~---~a~~l~ltg~~i~A~eA~~~GLv~~vv~~~  190 (363)
T 3bpt_A          155 PRLQGK---LGYFLALTGFRLKGRDVYRAGIATHFVDSE  190 (363)
T ss_dssp             HHSSTT---HHHHHHHHCCCEETHHHHHTTSCSEECCGG
T ss_pred             HHhhHH---HHHHHHHcCCCCCHHHHHHCCCcceecCHH
Confidence            111231   233445557789999999999999998654

>4hdt_A 3-hydroxyisobutyryl-COA hydrolase; ssgcid, carnitinyl-COA dehydratase, enoyl-COA hydratase/ISOM mycobacterium thermoresistibIle; 1.60A {Mycobacterium thermoresistibile}

Probab=97.85  E-value=7.9e-05  Score=62.92  Aligned_cols=99  Identities=14%  Similarity=0.119  Sum_probs=67.7

Q ss_pred             HHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHH
Q 031001           36 YAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIEL  115 (167)
Q Consensus        36 ~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~  115 (167)
                      ..++..|..++.||.+.+.|.|.+.|.-++++|  +-|++.++++|.+-...++..-+-..-     ..|.+        
T Consensus        95 ~~~~~~i~~~~kPvIAav~G~a~GgG~~lal~c--D~ria~~~a~f~~pe~~iGl~p~~g~~-----~~l~r--------  159 (353)
T 4hdt_A           95 YRLNAHIGRYPKPYVSIMDGIVMGGGVGVGAHG--NVRVVTDTTKMAMPEVGIGFIPDVGGT-----YLLSR--------  159 (353)
T ss_dssp             HHHHHHHHHCSSCEEEEECBEEETHHHHHHTTS--SEEEECTTCEEECCGGGGTCCCCTTHH-----HHHHT--------
T ss_pred             HHHHHHHHHCCCCEEEEeECceeecCccccCCc--CeeccchhccccCcccccccCCCccce-----ehhhh--------
Confidence            457778899999999999999999999999999  579999999887743332221111100     00111        


Q ss_pred             HHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001          116 LAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ  155 (167)
Q Consensus       116 ~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~  155 (167)
                         .-| .  .-.+++-....++|+||+++||||+|+++.
T Consensus       160 ---l~g-~--~a~~l~ltG~~i~A~eA~~~GLv~~vv~~~  193 (353)
T 4hdt_A          160 ---APG-K--LGLHAALTGAPFSGADAIVMGFADHYVPHD  193 (353)
T ss_dssp             ---SST-T--HHHHHHHHCCCBCHHHHHHHTSCSEECCGG
T ss_pred             ---hhh-H--HHHHHHhcCCCCCHHHHHHcCCCcEEeCHH
Confidence               111 1  112233345679999999999999998764

>4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics center for infectious DI niaid; 1.75A {Mycobacterium marinum}

Probab=97.84  E-value=5e-05  Score=61.84  Aligned_cols=95  Identities=15%  Similarity=0.117  Sum_probs=66.7

Q ss_pred             HHHHh---hcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCc--CChhHHHHHHHHHHHHHHHHH
Q 031001           39 ADAMA---YCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSS--GPVTDMWRKAKDLEANAESYI  113 (167)
Q Consensus        39 ~~~i~---~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~--G~~~dl~~~~~~l~~~~~~~~  113 (167)
                      ++.|.   .++.||.+.+.|.|.+.|.-++++|  +-|++.++++|.+-...++..-  |...-+               
T Consensus       105 ~~~l~~~~~~~kPvIAav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~Gl~p~~g~~~~L---------------  167 (278)
T 4f47_A          105 IDALLKGRRLKKPLIAAVEGPAIAGGTEILQGT--DIRVAAESAKFGISEAKWSLYPMGGSAVRL---------------  167 (278)
T ss_dssp             BTTTTBSCCCSSCEEEEECSEEETHHHHHHTTC--SEEEEETTCEEECCGGGGTCCCTTSHHHHH---------------
T ss_pred             HHHHHHhcCCCCCEEEEECCEEehHHHHHHHhC--CEEEEcCCCEEECcccccCCCCCccHHHHH---------------
Confidence            34455   7889999999999999999999999  5799999998876444332221  111111               


Q ss_pred             HHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001          114 ELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ  155 (167)
Q Consensus       114 ~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~  155 (167)
                         .+..  ....-.+++-....++++||+++||||+|.+..
T Consensus       168 ---~r~v--G~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~  204 (278)
T 4f47_A          168 ---VRQI--PYTVACDLLLTGRHITAAEAKEMGLVGHVVPDG  204 (278)
T ss_dssp             ---HHHS--CHHHHHHHHHHCCCEEHHHHHHTTSCSEEECTT
T ss_pred             ---HHHh--CHHHHHHHHHcCCcCCHHHHHHCCCceEeeChh
Confidence               1111  223334455556788999999999999999764

>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans}

Probab=97.84  E-value=0.00011  Score=65.53  Aligned_cols=98  Identities=14%  Similarity=0.081  Sum_probs=69.9

Q ss_pred             HHHHHH----hhcCCCeEEEEccccccHHHHHHhcCCCCceeeecC--Cceeeeccc-ccCCc--CChhHHHHHHHHHHH
Q 031001           37 AIADAM----AYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPN--SSTKLYLPV-VGRSS--GPVTDMWRKAKDLEA  107 (167)
Q Consensus        37 aI~~~i----~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~--s~~miH~p~-~~~~~--G~~~dl~~~~~~l~~  107 (167)
                      .++..|    ..++.||.+.+.|.|.+.|.-++++|  +.|++.++  +.|.+-... ++-.-  |-..-          
T Consensus       116 ~l~~~L~~a~~~~pKPVIAAVnG~AlGGGleLALAC--D~rIAse~~~A~FglPEv~~LGL~Pg~Ggt~r----------  183 (556)
T 2w3p_A          116 ETRNGLEDSSRHSGLKFLAAVNGACAGGGYELALAC--DEIYLVDDRSSSVSLPEVPLLGVLPGTGGLTR----------  183 (556)
T ss_dssp             HHHHHHHHHHHHTSCEEEEEECSEEETHHHHHHHHS--SEEEEECSSSCEEECCHHHHHSSCCTTTHHHH----------
T ss_pred             HHHHHHHHHHhcCCCCEEEEECCeechhhHHHHHhC--CEEEEcCCCCcEEecccccccCCCCCccHHHH----------
Confidence            456677    88899999999999999999999999  57999999  887763322 22111  11111          


Q ss_pred             HHHHHHHHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCC
Q 031001          108 NAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDS  154 (167)
Q Consensus       108 ~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~  154 (167)
                              +..+.-.....-.+++-....++++||+++||||+|+++
T Consensus       184 --------Lp~~RlVG~~rA~eLlLTGr~isA~EAl~lGLVdeVVp~  222 (556)
T 2w3p_A          184 --------VTDKRKVRHDRADIFCTVVEGVRGERAKAWRLVDEVVKP  222 (556)
T ss_dssp             --------HHHTSCCCHHHHHHHTTCSSCEEHHHHHHTTSCSEEECH
T ss_pred             --------HHhhccCCHHHHHHHHHcCCCCCHHHHHHCCCceEEeCh
Confidence                    110011234555667777888999999999999999853

>3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.09A {Mycobacterium abscessus}

Probab=97.82  E-value=6.6e-05  Score=60.51  Aligned_cols=92  Identities=13%  Similarity=0.090  Sum_probs=64.5

Q ss_pred             hcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 031001           44 YCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKP  123 (167)
Q Consensus        44 ~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a~~tg~~  123 (167)
                      .++.||.+.+.|.|.+.|.-++++|  +-|++.++++|.+-...++..-+-..-     ..|           .+..  .
T Consensus        91 ~~~kPvIAav~G~a~GgG~~lalac--D~~ia~~~a~f~~pe~~~Gl~p~~g~~-----~~l-----------~r~v--G  150 (256)
T 3trr_A           91 PPRKPIIAAVEGFALAGGTELVLSC--DLVVAGRSAKFGIPEVKRGLVAGAGGL-----LRL-----------PNRI--P  150 (256)
T ss_dssp             CCSSCEEEEECSBCCTHHHHHHHTS--SEEEEETTCEECCCGGGGTCCCCSSHH-----HHH-----------HHHS--C
T ss_pred             cCCCCEEEEECCeeeechhHHHHhC--CEEEECCCCEEEehhhccCCCCCccHH-----HHH-----------HHHh--C
Confidence            5678999999999999999999999  479999999887643332222111100     001           1112  2


Q ss_pred             HHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001          124 KEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ  155 (167)
Q Consensus       124 ~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~  155 (167)
                      .....+++-....++++||+++||||+|.+..
T Consensus       151 ~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~  182 (256)
T 3trr_A          151 YQVAMELALTGESFTAEDAAKYGFINRLVDDG  182 (256)
T ss_dssp             HHHHHHHHHHCCCEEHHHHGGGTCCSEEECTT
T ss_pred             HHHHHHHHHhCCCcCHHHHHHCCCeeEecChH
Confidence            34445556667889999999999999998764

>2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase, lyase, crotonase, biocatalysis, beta-diketone; 1.46A {Anabaena SP} PDB: 2j5s_A* 2j5g_D

Probab=97.81  E-value=4e-05  Score=62.15  Aligned_cols=96  Identities=9%  Similarity=-0.039  Sum_probs=65.7

Q ss_pred             HHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceee-ecccccCC--cCChhHHHHHHHHHHHHHHHH
Q 031001           36 YAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKL-YLPVVGRS--SGPVTDMWRKAKDLEANAESY  112 (167)
Q Consensus        36 ~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~mi-H~p~~~~~--~G~~~dl~~~~~~l~~~~~~~  112 (167)
                      ..++..|..++.||.+.+.|.|. .|.-++++|  +-|++.++++|.+ -...++..  .|-..-+       .      
T Consensus       107 ~~~~~~l~~~~kPvIAav~G~a~-GG~~Lalac--D~ria~~~a~f~~~pe~~lGl~p~~g~~~~L-------~------  170 (263)
T 2j5g_A          107 KKVLQNLLDIEVPVISAVNGAAL-LHSEYILTT--DIILASENTVFQDMPHLNAGIVPGDGVHILW-------P------  170 (263)
T ss_dssp             HHHHHHHHTCCSCEEEEECSEEC-SCGGGGGGC--SEEEEETTCEECCCHHHHHTCCCCSSHHHHH-------H------
T ss_pred             HHHHHHHHhCCCCEEEEECCcch-HHHHHHHhC--CEEEEcCCCEEecCcccccccCCCccHHHHH-------H------
Confidence            35677888999999999999999 588888888  5899999998865 22222211  1111111       1      


Q ss_pred             HHHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCC
Q 031001          113 IELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDS  154 (167)
Q Consensus       113 ~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~  154 (167)
                           +..|  ...-.+++-....++|+||+++||||+|+++
T Consensus       171 -----r~vG--~~~A~~llltG~~~~A~eA~~~GLv~~vv~~  205 (263)
T 2j5g_A          171 -----LALG--LYRGRYFLFTQEKLTAQQAYELNVVHEVLPQ  205 (263)
T ss_dssp             -----HHHH--HHHHHHHHHTTCCEEHHHHHHTTSCSEEECG
T ss_pred             -----HHcC--HHHHHHHHHcCCCCCHHHHHHCCCccEecCh
Confidence                 0011  1233455556778999999999999999865

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=97.80  E-value=0.00016  Score=66.23  Aligned_cols=97  Identities=14%  Similarity=0.155  Sum_probs=69.2

Q ss_pred             HHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCc--CChhHHHHHHHHHHHHHHHHH
Q 031001           36 YAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSS--GPVTDMWRKAKDLEANAESYI  113 (167)
Q Consensus        36 ~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~--G~~~dl~~~~~~l~~~~~~~~  113 (167)
                      ..++..|..++.||.+.+.|.|.+.|.-++++|  +.|++.++++|.+-...++-.-  |-..-+               
T Consensus        93 ~~~~~~l~~~~kPvIAav~G~a~GgG~elalac--D~ria~~~a~fglpev~lGl~P~~ggt~~L---------------  155 (715)
T 1wdk_A           93 NKIFSDFEDLNVPTVAAINGIALGGGLEMCLAA--DFRVMADSAKIGLPEVKLGIYPGFGGTVRL---------------  155 (715)
T ss_dssp             HHHHHHHHTCSSCEEEEECSCEETHHHHHHHTS--SEEEEETTCEEECGGGGGTCCCCSSHHHHH---------------
T ss_pred             HHHHHHHHhCCCCEEEEECCEeeHHHHHHHHHC--CEEEEeCCCEEeChhhccCCCCCccHHHHH---------------
Confidence            456778889999999999999999999999999  5899999998776443332221  211111               


Q ss_pred             HHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCC
Q 031001          114 ELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDS  154 (167)
Q Consensus       114 ~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~  154 (167)
                         .+..|  ...-.+++-....++|+||+++||||+|.+.
T Consensus       156 ---~r~vG--~~~A~~l~ltG~~~~a~eA~~~GLv~~vv~~  191 (715)
T 1wdk_A          156 ---PRLIG--VDNAVEWIASGKENRAEDALKVSAVDAVVTA  191 (715)
T ss_dssp             ---HHHHC--HHHHHHHHHHCCCEEHHHHHHTTSSSEEECG
T ss_pred             ---HHHhC--HHHHHHHHHcCCCCCHHHHHHCCCceEEeCh
Confidence               11111  2223344555778999999999999999864

>3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.20A {Mycobacterium marinum}

Probab=97.77  E-value=9.6e-05  Score=59.85  Aligned_cols=88  Identities=11%  Similarity=0.062  Sum_probs=62.8

Q ss_pred             CCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCc--CChhHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 031001           46 KSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSS--GPVTDMWRKAKDLEANAESYIELLAKGTGKP  123 (167)
Q Consensus        46 ~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~--G~~~dl~~~~~~l~~~~~~~~~~~a~~tg~~  123 (167)
                      +.||.+.+.|.|.+.|.-++++|  +-|++.++++|.+-...++..-  |-..-+                  .+..  .
T Consensus       102 ~kPvIAav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~Gl~p~~g~~~~l------------------~~~v--G  159 (265)
T 3qxi_A          102 AKPLIAAVEGYALAGGTELALAT--DLIVAARDSAFGIPEVKRGLVAGGGGLLRL------------------PERI--P  159 (265)
T ss_dssp             SSCEEEEECSEEETHHHHHHHHS--SEEEEETTCEEECGGGGGTCCCCSSHHHHH------------------HHHS--C
T ss_pred             CCCEEEEECCceeHHHHHHHHhC--CEEEEcCCCEEECcccccCcCCcccHHHHH------------------HHHh--C
Confidence            78999999999999999999999  5799999998876444332221  111111                  1111  2


Q ss_pred             HHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001          124 KEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ  155 (167)
Q Consensus       124 ~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~  155 (167)
                      ...-.+++-....++++||+++||||+|.+..
T Consensus       160 ~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~  191 (265)
T 3qxi_A          160 YAIAMELALTGDNLSAERAHALGMVNVLAEPG  191 (265)
T ss_dssp             HHHHHHHHHHCCCEEHHHHHHTTSCSEEECTT
T ss_pred             HHHHHHHHHcCCCcCHHHHHHCCCccEeeChh
Confidence            33334555567889999999999999998764

>3ju1_A Enoyl-COA hydratase/isomerase family protein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: MSE; 2.30A {Shewanella oneidensis}

Probab=97.75  E-value=6.4e-05  Score=64.71  Aligned_cols=98  Identities=15%  Similarity=0.078  Sum_probs=68.8

Q ss_pred             HHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHH
Q 031001           37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELL  116 (167)
Q Consensus        37 aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~  116 (167)
                      .++..|..++.||.+.+.|.|.+.|.-++++|  +-|++.++++|.+-...++..-+-..-                ..+
T Consensus       133 ~l~~~i~~~~kPvIAaVnG~a~GgG~~Lalac--D~ria~~~a~f~~pe~~lGl~P~~G~t----------------~~L  194 (407)
T 3ju1_A          133 RLDYLLHTYGKPVLVWGDGIVMGGGLGLMAGA--SHKVVTETSRIAMPEVTIGLYPDVGGS----------------YFL  194 (407)
T ss_dssp             HHHHHHHTCSSCEEEECCSEEETHHHHHHHHC--SEEEECTTCEEECGGGGGTCCSCTTHH----------------HHT
T ss_pred             HHHHHHHHCCCCEEEEECCccccCcchHHhcC--CEEEEcCCCEEeChHhhcCCCCCchHH----------------HHH
Confidence            35677889999999999999999999999999  579999999887744433221111000                001


Q ss_pred             HHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001          117 AKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ  155 (167)
Q Consensus       117 a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~  155 (167)
                      .+..|   ..-.+++-....++|+||+++||||+|+++.
T Consensus       195 ~rl~g---~~A~~l~ltG~~i~A~eA~~~GLv~~vv~~~  230 (407)
T 3ju1_A          195 NRMPG---KMGLFLGLTAYHMNAADACYVGLADHYLNRD  230 (407)
T ss_dssp             TTSST---THHHHHHHHCCCBCHHHHHHHTSCSEECCGG
T ss_pred             hhhhH---HHHHHHHHcCCcCcHHHHHHCCCccEEcCHH
Confidence            11122   2234455567789999999999999998653

>2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis, accase, ligase, transferase; 2.2A {Mycobacterium tuberculosis} PDB: 2a7s_A

Probab=97.75  E-value=3.7e-05  Score=68.61  Aligned_cols=79  Identities=16%  Similarity=0.116  Sum_probs=63.5

Q ss_pred             CCCeEEEEcCCCCCCC-CCCCCCCHHHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhcC--CCCceeeecCCceeeec
Q 031001            9 SKPIYLYINSSGTQNE-KKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVG--AKGYRGLQPNSSTKLYL   85 (167)
Q Consensus         9 ~~~I~l~INS~G~~~~-~~~~~G~v~~g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag--~~~~R~~~p~s~~miH~   85 (167)
                      +-||..++|+||-..+ ..|--|.+.++-.+++++.....|+.|++.|.|+|.|.+.+++.  ..+..++.|++.+.+..
T Consensus       382 ~iPlv~lvDt~Gf~~G~~~E~~Gi~~~ga~~l~a~~~~~VP~isvI~g~~~Ggg~~am~~~~~~~d~~~awp~a~i~Vmg  461 (548)
T 2bzr_A          382 NIPIVMLVDVPGFLPGTDQEYNGIIRRGAKLLYAYGEATVPKITVITRKAYGGAYCVMGSKDMGCDVNLAWPTAQIAVMG  461 (548)
T ss_dssp             TCCEEEEEEECCBCCCHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEESSC
T ss_pred             CCCEEEEeeccCCCCChHHHHhhHHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhccccCCCCEEEEcCCCEEEecC
Confidence            5699999999994432 33444788899999999999999999999999999988876541  13578899999988876


Q ss_pred             cc
Q 031001           86 PV   87 (167)
Q Consensus        86 p~   87 (167)
                      |.
T Consensus       462 pe  463 (548)
T 2bzr_A          462 AS  463 (548)
T ss_dssp             HH
T ss_pred             HH
Confidence            65

>3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium avium subsp} SCOP: c.14.1.0 PDB: 3r9s_A 3r0o_A

Probab=97.74  E-value=0.0001  Score=59.80  Aligned_cols=92  Identities=13%  Similarity=0.117  Sum_probs=64.3

Q ss_pred             hcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 031001           44 YCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKP  123 (167)
Q Consensus        44 ~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a~~tg~~  123 (167)
                      .++.||.+.+.|.|.+.|.-++++|  +-|++.++++|.+-...++..-+-.. .               ..+.+..  .
T Consensus        99 ~~~kPvIAav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~Gl~p~~g~-~---------------~~L~r~v--G  158 (267)
T 3r9t_A           99 FIDKPTIAAVNGTALGGGTELALAS--DLVVADERAQFGLPEVKRGLIAAAGG-V---------------FRIAEQL--P  158 (267)
T ss_dssp             CCSSCEEEEECSEECTHHHHHHHHS--SEEEEETTCEECCGGGGTTCCCTTTH-H---------------HHHHHHS--C
T ss_pred             hCCCCEEEEECCEEEhHHHHHHHhC--CEEEEcCCCEEECcccccCCCCCccH-H---------------HHHHHHc--C
Confidence            6789999999999999999999999  57999999988764433222111110 0               0111111  2


Q ss_pred             HHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001          124 KEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ  155 (167)
Q Consensus       124 ~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~  155 (167)
                      ...-.+++-....++++||+++||||+|+++.
T Consensus       159 ~~~A~~l~ltg~~i~A~eA~~~GLv~~vv~~~  190 (267)
T 3r9t_A          159 RKVAMRLLLTGEPLSAAAARDWGLINEVVEAG  190 (267)
T ss_dssp             HHHHHHHHHHCCCEEHHHHHHHTSSSEEECTT
T ss_pred             HHHHHHHHHcCCCCCHHHHHHCCCccEEcChh
Confidence            23344555567889999999999999999764

>3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A {Mycobacterium abscessus} PDB: 3qka_A

Probab=97.74  E-value=5.8e-05  Score=61.12  Aligned_cols=93  Identities=14%  Similarity=0.119  Sum_probs=64.9

Q ss_pred             HHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCc--CChhHHHHHHHHHHHHHHHHHHHHHH
Q 031001           41 AMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSS--GPVTDMWRKAKDLEANAESYIELLAK  118 (167)
Q Consensus        41 ~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~--G~~~dl~~~~~~l~~~~~~~~~~~a~  118 (167)
                      .+..++.||.+.+.|.|.+.|.-++++|  +-|++.++++|.+-...++..-  |-..-+       -           +
T Consensus        96 ~~~~~~kPvIAav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~Gl~p~~g~~~~L-------~-----------r  155 (262)
T 3r9q_A           96 SRLRLSKPVIAAISGHAVAGGIELALWC--DLRVVEEDAVLGVFCRRWGVPLIDGGTIRL-------P-----------R  155 (262)
T ss_dssp             TTCCCSSCEEEEECSEEETHHHHHHHHS--SEEEEETTCEEECTHHHHTCCCCSSHHHHH-------H-----------H
T ss_pred             HHHhCCCCEEEEECCeeehhhhHHHHhC--CEEEEeCCCEEecchhccCCCCCccHHHHH-------H-----------H
Confidence            4457889999999999999999999999  5799999998776333322211  111111       0           1


Q ss_pred             HhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001          119 GTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ  155 (167)
Q Consensus       119 ~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~  155 (167)
                      ..  ....-.+++-....++|+||+++||||+|.+..
T Consensus       156 ~v--G~~~A~~l~ltG~~~~A~eA~~~GLv~~vv~~~  190 (262)
T 3r9q_A          156 LI--GHSRAMDLILTGRPVHANEALDIGLVNRVVARG  190 (262)
T ss_dssp             HH--CHHHHHHHHHHCCCEEHHHHHHTTSCSEEECTT
T ss_pred             Hh--CHHHHHHHHHcCCcCCHHHHHHcCCccEecChh
Confidence            11  122334455557789999999999999999764

>1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump, carboxyltransferase, lyase; 2.20A {Acidaminococcus fermentans} SCOP: c.14.1.4 c.14.1.4

Probab=97.73  E-value=7.2e-05  Score=67.28  Aligned_cols=131  Identities=11%  Similarity=0.108  Sum_probs=85.3

Q ss_pred             CCCeEEEEcCCCCCCC-CCCCCCCHHHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhcC--CC--CceeeecCCceee
Q 031001            9 SKPIYLYINSSGTQNE-KKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVG--AK--GYRGLQPNSSTKL   83 (167)
Q Consensus         9 ~~~I~l~INS~G~~~~-~~~~~G~v~~g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag--~~--~~R~~~p~s~~mi   83 (167)
                      +-||...+|+||-..+ ..|.-|....+-.+..++...+.|+.|++.|.+.|.|.+.+++.  ..  +..++.|++.+.+
T Consensus       406 ~iPlv~lvDtpGf~~G~~~E~~Gi~~~gA~~~~a~a~a~vP~itvI~g~~~Ggg~~am~~~~~~~~~d~~~a~p~A~~~V  485 (587)
T 1pix_A          406 RLPIVWIQDTTGIDVGNDAEKAELLGLGQSLIYSIQTSHIPQFEITLRKGTAAAHYVLGGPQGNDTNAFSIGTAATEIAV  485 (587)
T ss_dssp             TCCEEEEECCCEECCSHHHHHTTHHHHHHHHHHHHHTCCCCEEEEECSEEETTHHHHTTCTTCTTTEEEEEECTTCEEES
T ss_pred             CCCeEEEecCCCCCCcHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCccHHHHHhcCcccCcccceeeeccCCeEec
Confidence            5699999999995533 44555888899999999999999999999999999998776641  11  4567888888766


Q ss_pred             ecccccCCcCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhC-----CCccccHHHHHHcCcceEEeCCc
Q 031001           84 YLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQ-----RPKYMQAKEAIVYGLADKIIDSQ  155 (167)
Q Consensus        84 H~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~-----~~~~lsa~EA~e~GliD~I~~~~  155 (167)
                      -.|. +     +..+. +..++.+.         ++.|.+.++..+.++     -....+|..|.+.|+||.|+++.
T Consensus       486 m~pe-g-----aa~Il-~r~~~~~~---------~~~g~~~~~~~~~~~~~~~~y~~~~~p~~aa~~g~iD~VI~p~  546 (587)
T 1pix_A          486 MNGE-T-----AATAM-YSRRLAKD---------RKAGKDLQPTIDKMNNLIQAFYTKSRPKVCAELGLVDEIVDMN  546 (587)
T ss_dssp             SCHH-H-----HHHHH-HHHHHHHH---------HHTTCCCHHHHHHHHHHHHHHHHTTSHHHHHHHTSSSEECCTT
T ss_pred             CCHH-H-----HHHHH-Hhhhhhhh---------hhcCCChHHHHHHHHHHHHHHHHhCCHHHHHhcCCCccccCHH
Confidence            5443 1     22221 11122111         111222222111111     00148899999999999999864

>3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, otholog; 2.15A {Mycobacterium avium subsp} SCOP: c.14.1.0

Probab=97.72  E-value=5.8e-05  Score=61.29  Aligned_cols=97  Identities=12%  Similarity=0.038  Sum_probs=66.3

Q ss_pred             HHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHHH
Q 031001           38 IADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLA  117 (167)
Q Consensus        38 I~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a  117 (167)
                      ++..|..++.||.+.+.|.|.+.|.-++++|  +-|++.++++|.+-...++..-  . -.              ...+.
T Consensus       102 ~~~~l~~~~kPvIAav~G~a~GgG~~lalac--D~~ia~~~a~f~~pe~~~Gl~p--~-g~--------------~~~L~  162 (274)
T 3tlf_A          102 GTPPFRTMAKPVLTAVNGICCGAGMDWVTTT--DIVIASEQATFFDPHVSIGLVA--G-RE--------------LVRVS  162 (274)
T ss_dssp             TCCCTTSCCSCEEEEECSEEEGGGHHHHHHS--SEEEEETTCEEECCGGGGTCCC--C-HH--------------HHHHT
T ss_pred             HHHHHHhCCCCEEEEECCeeehHHHHHHHhC--CEEEEcCCCEEECcccccCccc--c-hH--------------HHHHH
Confidence            3445777889999999999999999999999  5799999998877443322111  1 10              00111


Q ss_pred             HHhCCCHHHHHhhhCCCc--cccHHHHHHcCcceEEeCCc
Q 031001          118 KGTGKPKEEIAKDIQRPK--YMQAKEAIVYGLADKIIDSQ  155 (167)
Q Consensus       118 ~~tg~~~~~i~~~~~~~~--~lsa~EA~e~GliD~I~~~~  155 (167)
                      +..|  ...-.+++-...  .++|+||+++||||+|++..
T Consensus       163 r~vG--~~~A~~l~ltg~~~~~~A~eA~~~GLv~~vv~~~  200 (274)
T 3tlf_A          163 RVLP--RSIALRMALMGKHERMSAQRAYELGLISEIVEHD  200 (274)
T ss_dssp             TTSC--HHHHHHHHHHGGGCCEEHHHHHHHTSSSEEECGG
T ss_pred             HHhC--HHHHHHHHHcCCCCccCHHHHHHCCCCCeecCHH
Confidence            2222  223334444455  89999999999999998753

>1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE; 2.30A {Thermotoga maritima} SCOP: c.14.1.4 c.14.1.4

Probab=97.71  E-value=5.8e-05  Score=67.08  Aligned_cols=127  Identities=20%  Similarity=0.259  Sum_probs=83.6

Q ss_pred             CCCeEEEEcCCCCCCC-CCCCCCCHHHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhcC--CCCceeeecCCceeeec
Q 031001            9 SKPIYLYINSSGTQNE-KKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVG--AKGYRGLQPNSSTKLYL   85 (167)
Q Consensus         9 ~~~I~l~INS~G~~~~-~~~~~G~v~~g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag--~~~~R~~~p~s~~miH~   85 (167)
                      .-||...+|+||-..+ ..|-.|....+-.++..+...+.|+.+++.|.|+|.|.+.+.+.  ..+..++.|++.+.+-.
T Consensus       365 ~~Plv~lvDtpG~~~G~~~E~~g~~~~~A~~~~a~~~~~vP~isvI~g~~~gGg~~am~~~~~~~d~~~a~p~a~~~Vm~  444 (527)
T 1vrg_A          365 NIPILTFVDTPGYLPGVAQEHGGIIRHGAKLLYAYSEATVPKITVILRKAYGGAYIAMGSKHLGADMVLAWPSAEIAVMG  444 (527)
T ss_dssp             TCCEEEEEEECCBCCCHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEESSC
T ss_pred             CCCeEEEecCCCCcCchhhHHhHHHHHHHHHHHHHhcCCCCEEEEEeCCcccHHHHHhcCCCCCCCEEEEcCCCeEEecC
Confidence            5699999999995432 33455778888889999999999999999999999888776541  12567888998877655


Q ss_pred             ccccCCcCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHh-hhC--CCccccHHHHHHcCcceEEeCCc
Q 031001           86 PVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAK-DIQ--RPKYMQAKEAIVYGLADKIIDSQ  155 (167)
Q Consensus        86 p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~-~~~--~~~~lsa~EA~e~GliD~I~~~~  155 (167)
                      |. +     +..+. +.+++.+.             .++++..+ +..  ++...+|..+.+.|+||.|+++.
T Consensus       445 pe-g-----aa~Il-~r~~~~~~-------------~d~~~~~~~~~~~y~~~~~~p~~~~~~g~iD~II~p~  497 (527)
T 1vrg_A          445 PE-G-----AANII-FKREIEAS-------------SNPEETRRKLIEEYKQQFANPYIAASRGYVDMVIDPR  497 (527)
T ss_dssp             HH-H-----HHHHH-THHHHHHS-------------SCHHHHHHHHHHHHHHHTSSHHHHHHTTSSSEECCGG
T ss_pred             HH-H-----HHHHH-hhhhhhcc-------------cCHHHHHHHHHHHHHHhhCCHHHHHHcCCCCeeeCHH
Confidence            53 1     11211 11111110             01222211 111  13346788899999999999863

>1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} SCOP: c.14.1.4 c.14.1.4 PDB: 1on9_A*

Probab=97.66  E-value=5.1e-05  Score=67.41  Aligned_cols=127  Identities=16%  Similarity=0.179  Sum_probs=84.2

Q ss_pred             CCCeEEEEcCCCCCCC-CCCCCCCHHHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhcC--CCCceeeecCCceeeec
Q 031001            9 SKPIYLYINSSGTQNE-KKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVG--AKGYRGLQPNSSTKLYL   85 (167)
Q Consensus         9 ~~~I~l~INS~G~~~~-~~~~~G~v~~g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag--~~~~R~~~p~s~~miH~   85 (167)
                      +-||...+|+||-..+ ..|--|.+..+-.+..++...+.|+.|++.|.++|.|.+.+.+.  ..+..++.|++.+.+-.
T Consensus       361 ~iPlv~lvDtpGf~~G~~~E~~Gi~~~~A~~l~a~a~~~vP~itvI~g~~~Ggg~~am~~~~~~~d~~~a~p~a~~~Vm~  440 (523)
T 1on3_A          361 NIPLVQLVDVPGFLPGVQQEYGGIIRHGAKMLYAYSEATVPKITVVLRKAYGGSYLAMCNRDLGADAVYAWPSAEIAVMG  440 (523)
T ss_dssp             TCCEEEEEEECCBCCCHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHTTTCGGGTCSEEEECTTCEEESSC
T ss_pred             CCCeEEEEeCCCcCcchHHHHhhHHHHHHHHHHHHhcCCCCEEEEEeCCcccHHHHHhcccCCCCCEEEEcCCCeEEecC
Confidence            5699999999995533 34555888889999999999999999999999999988776551  12567888898877655


Q ss_pred             ccccCCcCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHh-hhC--CCccccHHHHHHcCcceEEeCCc
Q 031001           86 PVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAK-DIQ--RPKYMQAKEAIVYGLADKIIDSQ  155 (167)
Q Consensus        86 p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~-~~~--~~~~lsa~EA~e~GliD~I~~~~  155 (167)
                      |. +     +..+. +.+++.+.             .++++..+ +..  ++...+|..+.+.|+||.|+++.
T Consensus       441 pe-g-----aa~Il-~r~~~~~~-------------~d~~~~~~~~~~~y~~~~~~p~~~a~~g~iD~II~p~  493 (523)
T 1on3_A          441 AE-G-----AANVI-FRKEIKAA-------------DDPDAMRAEKIEEYQNAFNTPYVAAARGQVDDVIDPA  493 (523)
T ss_dssp             HH-H-----HHHHH-THHHHHHS-------------SCHHHHHHHHHHHHHHHHSSHHHHHHTTSSSEECCGG
T ss_pred             HH-H-----HHHHH-hhhhhhcc-------------cCHHHHHHHHHHHHHHhhCCHHHHHhcCCCCEeeCHH
Confidence            53 1     11211 11111111             01122111 111  12346788899999999999863

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=97.56  E-value=0.0004  Score=64.02  Aligned_cols=102  Identities=22%  Similarity=0.230  Sum_probs=71.8

Q ss_pred             HHHHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHH
Q 031001           34 DAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYI  113 (167)
Q Consensus        34 ~g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~  113 (167)
                      ....+++.|..++.||.+.+.|.|.+.|.-++++|  +-|++.++++|.+-...++-.-|-..-     ..|        
T Consensus        94 ~~~~~~~~i~~~~kPvIAai~G~a~GGG~elalac--D~ria~~~a~fg~pev~lGl~Pg~ggt-----~rL--------  158 (742)
T 3zwc_A           94 ALGSLVDEIQRYQKPVLAAIQGVALGGGLELALGC--HYRIANAKARVGLPEVTLGILPGARGT-----QLL--------  158 (742)
T ss_dssp             HHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHTS--SEEEEETTCEEECGGGGGTCCCTTTHH-----HHH--------
T ss_pred             HHHHHHHHHHhCCCCEEEEECccchHHHHHHHHhc--CEEEEcCCCEEECcccCcccCCCccHH-----HHH--------
Confidence            45578899999999999999999999999999999  589999999877633332221111100     001        


Q ss_pred             HHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001          114 ELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ  155 (167)
Q Consensus       114 ~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~  155 (167)
                         .+..|  ...-.+++-....++|+||+++||||+|.+..
T Consensus       159 ---~rlvG--~~~A~~l~ltG~~i~a~eA~~~GLv~~vv~~d  195 (742)
T 3zwc_A          159 ---PRVVG--VPVALDLITSGKYLSADEALRLGILDAVVKSD  195 (742)
T ss_dssp             ---HHHHC--HHHHHHHHHHCCCEEHHHHHHHTSCSEEESSC
T ss_pred             ---HHhhh--HHHHHHHHHcCCchhHHHHHHcCCccEecCch
Confidence               11111  22333445567889999999999999998764

>2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferas beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4

Probab=97.48  E-value=0.00028  Score=58.55  Aligned_cols=105  Identities=14%  Similarity=0.163  Sum_probs=71.5

Q ss_pred             CCCeEEEEcCCCCCCCCCCCCCCHHH-------HHHHHHHHhhc---CCCeEEEEccccccHHHHHH-hcCCCCceeeec
Q 031001            9 SKPIYLYINSSGTQNEKKESVGAETD-------AYAIADAMAYC---KSKVYTVNCGMAYGQAAMLL-SVGAKGYRGLQP   77 (167)
Q Consensus         9 ~~~I~l~INS~G~~~~~~~~~G~v~~-------g~aI~~~i~~~---~~~V~t~~~G~aaS~a~~i~-~ag~~~~R~~~p   77 (167)
                      .-|+.+..+|+|         +++.+       +-.|...+..+   +.|+.+++.|-|++.|++.+ ++|  +.+++.|
T Consensus       153 ~~PvI~l~~sGG---------arlqeg~~~l~~~~~i~~al~~~~~~~vP~IavV~G~~~GGg~a~~a~~~--D~via~~  221 (304)
T 2f9y_B          153 NCPLICFSASGG---------ARMQEALMSLMQMAKTSAALAKMQERGLPYISVLTDPTMGGVSASFAMLG--DLNIAEP  221 (304)
T ss_dssp             TCCEEEEEEESS---------BCGGGTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEEHHHHTTGGGCC--SEEEECT
T ss_pred             CCCEEEEECCCC---------cCHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCccHHHHHHHhcC--CEEEEeC
Confidence            458999999999         55533       23456666544   89999999999999886664 455  5789999


Q ss_pred             CCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCchH
Q 031001           78 NSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDA  157 (167)
Q Consensus        78 ~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~~~  157 (167)
                      +|++.+--|.         -+                  ...+|..       +. +-..+++++.+.|+||.|++. ++
T Consensus       222 ~A~i~v~Gp~---------~i------------------~~~ig~~-------l~-~~~~~Ae~~~~~Glvd~Vv~~-~e  265 (304)
T 2f9y_B          222 KALIGFAGPR---------VI------------------EQTVREK-------LP-PGFQRSEFLIEKGAIDMIVRR-PE  265 (304)
T ss_dssp             TCBEESSCHH---------HH------------------HHHHTSC-------CC-TTTTBHHHHGGGTCCSEECCH-HH
T ss_pred             CcEEEeecHH---------HH------------------HHHhCcc-------CC-cccCCHHHHHhcCCccEEeCc-HH
Confidence            9988763222         11                  1112221       22 345799999999999999865 34


Q ss_pred             HHh
Q 031001          158 AYE  160 (167)
Q Consensus       158 ~~~  160 (167)
                      +.+
T Consensus       266 l~~  268 (304)
T 2f9y_B          266 MRL  268 (304)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Roseobacter denitrificans}

Probab=97.32  E-value=0.00041  Score=61.70  Aligned_cols=79  Identities=18%  Similarity=0.151  Sum_probs=63.2

Q ss_pred             CCCeEEEEcCCCCCCC-CCCCCCCHHHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhc--CCCCceeeecCCceeeec
Q 031001            9 SKPIYLYINSSGTQNE-KKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSV--GAKGYRGLQPNSSTKLYL   85 (167)
Q Consensus         9 ~~~I~l~INS~G~~~~-~~~~~G~v~~g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~a--g~~~~R~~~p~s~~miH~   85 (167)
                      +-||...+|+||-... ..|-.|.+..+-.+..++...+.|+.|++.|.+.|.|.+.+++  -..+..++.|++.+.+-.
T Consensus       373 ~iPlv~lvDtpGf~~G~~~E~~Gi~~~gAk~l~a~a~a~VP~itvI~g~~~Ggg~~am~~~~~~~d~~~awp~A~i~Vm~  452 (531)
T 3n6r_B          373 EIPLLTLIDVPGFLPGTSQEYGGVIKHGAKLLYAYGEATVPMVTVITRKAYGGAYVVMSSKHLRADFNYAWPTAEVAVMG  452 (531)
T ss_dssp             TCCEEEEEEECSBCCSHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEESSC
T ss_pred             CCCEEEEeCCCCCCCCHHHHHhhHHHHHHHHHHHHHhCCCCEEEEEcCCccchhhhhccCccCCCCeEEEcCCceEecCC
Confidence            4699999999995533 4444578889999999999999999999999999999887664  113567889999887755


Q ss_pred             cc
Q 031001           86 PV   87 (167)
Q Consensus        86 p~   87 (167)
                      |.
T Consensus       453 pe  454 (531)
T 3n6r_B          453 AK  454 (531)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC, PCC, CT, carboxyltransfe polyketide, fatty acid, PKS, FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A* 3ibb_A 3mfm_C 1xny_A* 1xnv_A* 1xo6_A

Probab=97.29  E-value=0.00012  Score=65.18  Aligned_cols=78  Identities=15%  Similarity=0.135  Sum_probs=60.9

Q ss_pred             CCCeEEEEcCCCCCCC-CCCCCCCHHHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhcC---CCCceeeecCCceeee
Q 031001            9 SKPIYLYINSSGTQNE-KKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVG---AKGYRGLQPNSSTKLY   84 (167)
Q Consensus         9 ~~~I~l~INS~G~~~~-~~~~~G~v~~g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag---~~~~R~~~p~s~~miH   84 (167)
                      +-||...+|+||-..+ ..|--|.+..+-.+..++...+.|+.|++.|.+.|.|.+. +++   ..+..++.|++.+.+-
T Consensus       367 ~iPlv~lvDtpGf~~G~~~E~~gi~~~~Ak~l~a~a~a~vP~itvI~g~~~GGa~~a-m~~~~~~~d~~~awp~a~~~Vm  445 (530)
T 3iav_A          367 NVPVLTFVDVPGFLPGVDQEHDGIIRRGAKLIFAYAEATVPLITVITRKAFGGAYVV-MGSKHLGADLNLAWPTAQIAVM  445 (530)
T ss_dssp             TCCEEEEEEECCBCCCHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHH-TTCGGGTCSEEEECTTCEEESS
T ss_pred             CCCEEEEeeCCCCCccHHHHHhhHHHHHHHHHHHHHhCCCCEEEEEeCCcchHHHHH-hcCCCCCCCEEEEcCCceEecC
Confidence            4699999999995533 3344578888999999999999999999999999966654 443   1367788999988775


Q ss_pred             ccc
Q 031001           85 LPV   87 (167)
Q Consensus        85 ~p~   87 (167)
                      .|.
T Consensus       446 ~~e  448 (530)
T 3iav_A          446 GAQ  448 (530)
T ss_dssp             CHH
T ss_pred             CHH
Confidence            554

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=97.26  E-value=0.00063  Score=62.40  Aligned_cols=96  Identities=20%  Similarity=0.194  Sum_probs=65.7

Q ss_pred             HHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCc--CChhHHHHHHHHHHHHHHHHHHH
Q 031001           38 IADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSS--GPVTDMWRKAKDLEANAESYIEL  115 (167)
Q Consensus        38 I~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~--G~~~dl~~~~~~l~~~~~~~~~~  115 (167)
                      ++..|..++.||.+.+.|.|.+.|.-++++|  +.|++.++++|.+-...++-.-  |-..-+       -         
T Consensus        94 ~~~~l~~~~kPvIAav~G~a~GgG~elalac--D~ria~~~a~fglpev~lGl~P~~Ggt~~L-------~---------  155 (725)
T 2wtb_A           94 ITDLLEAARKPSVAAIDGLALGGGLELAMAC--HARISAPAAQLGLPELQLGVIPGFGGTQRL-------P---------  155 (725)
T ss_dssp             CCCCCCTSSSCEEEEECSEEETHHHHHHHHS--SEEEECTTCEEECCGGGGTCCCCSSHHHHH-------H---------
T ss_pred             HHHHHHhCcCcEEEEECCccCcccHHHHHhC--CEEEEcCCCEEeCchhccCCCCCccHHHHH-------H---------
Confidence            3445667789999999999999999999999  5899999998766433322221  111111       1         


Q ss_pred             HHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001          116 LAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ  155 (167)
Q Consensus       116 ~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~  155 (167)
                        +..|  ...-.+++-....++|+||+++||||+|+++.
T Consensus       156 --rlvG--~~~A~~l~ltG~~~~a~eA~~~GLv~~vv~~~  191 (725)
T 2wtb_A          156 --RLVG--LTKALEMILTSKPVKAEEGHSLGLIDAVVPPA  191 (725)
T ss_dssp             --HHHC--HHHHHHHHHHCCCEEHHHHHHHTSCSEECCTT
T ss_pred             --HhcC--HHHHHHHHHcCCCCCHHHHHHCCccceEcChh
Confidence              1111  22233444456789999999999999998643

>2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A {Streptomyces toyocaensis} PDB: 2pg8_A*

Probab=97.15  E-value=0.00026  Score=61.63  Aligned_cols=90  Identities=19%  Similarity=0.057  Sum_probs=62.1

Q ss_pred             hcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 031001           44 YCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKP  123 (167)
Q Consensus        44 ~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a~~tg~~  123 (167)
                      .++.||.+.+.|.|.+.|+-++++|  +-|++.++++|.+-...++..    .+...+  .|-+           ..|  
T Consensus       282 ~~pkPvIAAVnG~A~GGG~eLALaC--DirIAae~A~Fglpev~lGl~----P~~g~~--~L~r-----------lvG--  340 (440)
T 2np9_A          282 RIEKPWVAAVDGFAIGGGAQLLLVF--DRVLASSDAYFSLPAAKEGII----PGAANL--RLGR-----------FAG--  340 (440)
T ss_dssp             EECCCEEEEECSEEETHHHHHGGGC--SEEEEETTCEEECCCTTTCCC----CTTHHH--HHHH-----------HHH--
T ss_pred             cCCCCEEEEECCcccccchHHHhhC--CEEEEcCCCEEECchhccCcC----cchHHH--HHHH-----------Hhh--
Confidence            5779999999999999999999999  579999999887754443322    121100  1111           111  


Q ss_pred             HHHHHhhhCCCccccHHHHHHcCcceEEeCC
Q 031001          124 KEEIAKDIQRPKYMQAKEAIVYGLADKIIDS  154 (167)
Q Consensus       124 ~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~  154 (167)
                      ...-.+++-....++++||+++||||+|++.
T Consensus       341 ~~~A~ellLtG~~i~A~EA~~~GLV~~Vvp~  371 (440)
T 2np9_A          341 PRVSRQVILEGRRIWAKEPEARLLVDEVVEP  371 (440)
T ss_dssp             HHHHHHHHHHCCCEETTSGGGGGTCSEEECH
T ss_pred             HHHHHHHHHcCCCCCHHHHHHCCCCcEecCh
Confidence            1222334445667999999999999999864

>3u9r_B MCC beta, methylcrotonyl-COA carboxylase, beta-subunit; carboxyltransferase, beta-BETA-alpha superhelix, ligase; HET: 1PE; 1.50A {Pseudomonas aeruginosa} PDB: 3u9s_B* 3u9t_B

Probab=97.07  E-value=0.0024  Score=57.03  Aligned_cols=78  Identities=18%  Similarity=0.208  Sum_probs=60.5

Q ss_pred             CCCeEEEEcCCCCCCC-CCCCCCCHHHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhcC--CCCceeeecCCceeeec
Q 031001            9 SKPIYLYINSSGTQNE-KKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVG--AKGYRGLQPNSSTKLYL   85 (167)
Q Consensus         9 ~~~I~l~INS~G~~~~-~~~~~G~v~~g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag--~~~~R~~~p~s~~miH~   85 (167)
                      +-||...+|+||-..+ ..|--|.+..+-.+..++...+.|+.|++.|.+.+.|++.+++.  ..+..++.|++.+.+-.
T Consensus       387 ~iPlv~lvDtpGf~~G~~~E~~Gi~~~gAk~~~a~~~a~vP~itvi~g~~~Ggg~~am~~~~~~~d~~~a~p~A~i~Vmg  466 (555)
T 3u9r_B          387 GIPLLFLQNITGFMVGQKYEAGGIAKHGAKLVTAVACARVPKFTVLIGGSFGAGNYGMCGRAYDPRFLWMWPNARIGVMG  466 (555)
T ss_dssp             TCCEEEEEEECCBCCSHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEETTHHHHTTCGGGCCSEEEECTTCEEESSC
T ss_pred             CCCEEEEecCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEeCCccchhhHhhcCccCCCCeEEEcCCcEEEcCC
Confidence            4699999999995432 33444888889999999999999999999999999988876531  22567888888776644


Q ss_pred             c
Q 031001           86 P   86 (167)
Q Consensus        86 p   86 (167)
                      |
T Consensus       467 p  467 (555)
T 3u9r_B          467 G  467 (555)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport, biotin, glutamate fermentation, lyase; HET: COO; 1.75A {Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A*

Probab=97.05  E-value=0.0015  Score=58.72  Aligned_cols=134  Identities=10%  Similarity=0.093  Sum_probs=82.8

Q ss_pred             CCCeEEEEcCCCCCCC-CCCCCCCHHHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhc---CC-CCceeeecCCceee
Q 031001            9 SKPIYLYINSSGTQNE-KKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSV---GA-KGYRGLQPNSSTKL   83 (167)
Q Consensus         9 ~~~I~l~INS~G~~~~-~~~~~G~v~~g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~a---g~-~~~R~~~p~s~~mi   83 (167)
                      +-||...+|+||-..+ ..|--|.+..+-.+..++...+.|+.|++.|.+.|.|.+.+++   ++ ....++.|+|.+.+
T Consensus       408 ~iPlv~lvDtpGf~~G~~aE~~Gi~~~gAk~l~a~a~a~VP~itvI~g~~~Ggg~~am~~~~~~~~~~~~~awp~A~~sV  487 (588)
T 3gf3_A          408 RIPLIWLQDTTGIDVGDEAEKAELLGLGQSLIYSIENSKLPSLEITIRKASAAAHYVLGGPQGNNTNVFSIGTGACEYYV  487 (588)
T ss_dssp             TCCEEEEECCCEECCSHHHHHTTHHHHHHHHHHHHHHHCSCEEEEESSEEETTHHHHTTCTTCTTTEEEEEECTTCEEES
T ss_pred             CCCeEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCccHHHHHHhcccccCCccceEEECCCceEEe
Confidence            4699999999995533 3344488888999999999999999999999999988766554   11 01446678887766


Q ss_pred             ecccccCCcCChhHHHHHHHHHHHHHHH---HHHHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCch
Q 031001           84 YLPVVGRSSGPVTDMWRKAKDLEANAES---YIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQD  156 (167)
Q Consensus        84 H~p~~~~~~G~~~dl~~~~~~l~~~~~~---~~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~~  156 (167)
                      -.|. +     +..+ .+.+++.+.++.   .....++     .+++.+...+.  .+|--|.+.|++|.||++.+
T Consensus       488 m~pE-g-----aa~I-l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~y~~~--~~p~~aA~r~~vD~VIdP~~  549 (588)
T 3gf3_A          488 MPGE-T-----AANA-MYSRKLVKAKKAGEDLQPIIGK-----MNDMIQMYTDK--SRPKYCTEKGMVDEIVDMTE  549 (588)
T ss_dssp             SCHH-H-----HHHH-HHHHHHHHC-------CHHHHH-----HHHHHHHHHHT--TSHHHHHHTTSSSEECCGGG
T ss_pred             CCHH-H-----HHHH-HhhhHHhhhhccccccchHHHH-----HHHHHHHHHHh--CCHHHHHhcCCCCeeeCHHH
Confidence            5443 1     2222 122333322110   0000000     01122222222  58999999999999998753

>1x0u_A Hypothetical methylmalonyl-COA decarboxylase ALPH; lyase; 2.20A {Sulfolobus tokodaii}

Probab=96.90  E-value=0.00014  Score=64.66  Aligned_cols=77  Identities=18%  Similarity=0.191  Sum_probs=61.1

Q ss_pred             CCCeEEEEcCCCCCCC-CCCCCCCHHHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhc----CCCCceeeecCCceee
Q 031001            9 SKPIYLYINSSGTQNE-KKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSV----GAKGYRGLQPNSSTKL   83 (167)
Q Consensus         9 ~~~I~l~INS~G~~~~-~~~~~G~v~~g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~a----g~~~~R~~~p~s~~mi   83 (167)
                      .-||...+||||-..+ ..|--|.+..+-.++..+...+.|+.+++.|.++|.|++.+++    +  +..++.|+|.+.+
T Consensus       360 ~~Plv~l~ds~G~~~G~~~E~~G~~~~~Ak~l~~~~~~~vP~Isvi~g~~~GGg~~~~a~~a~~~--D~v~a~p~A~i~v  437 (522)
T 1x0u_A          360 NIPLISLVDTPGYVPGTDQEYKGIIRHGAKMLYAFAEATVPKITVIVRKSYGGAHIAMSIKSLGA--DLVYAWPTAEIAV  437 (522)
T ss_dssp             TCCEEEEEEECCBCCSHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHHTCCGGGTC--SEEEECTTCEEES
T ss_pred             CCCEEEEecCCCCCCchHHHHHHHHHHHHHHHHHHHhCCCCEEEEEeCCcccHHHHHhcccccCC--CEEEEeCCCEEEe
Confidence            5699999999993321 2333477788888999999999999999999999999988766    4  5678889988877


Q ss_pred             eccc
Q 031001           84 YLPV   87 (167)
Q Consensus        84 H~p~   87 (167)
                      -.|.
T Consensus       438 ~gpe  441 (522)
T 1x0u_A          438 TGPE  441 (522)
T ss_dssp             SCHH
T ss_pred             cCHH
Confidence            6664

>2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}

Probab=96.70  E-value=0.0043  Score=51.01  Aligned_cols=102  Identities=11%  Similarity=0.056  Sum_probs=65.4

Q ss_pred             CCCeEEEEcCCCCCCCCCCCCCCHHHHH-------H---HHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecC
Q 031001            9 SKPIYLYINSSGTQNEKKESVGAETDAY-------A---IADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPN   78 (167)
Q Consensus         9 ~~~I~l~INS~G~~~~~~~~~G~v~~g~-------a---I~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~   78 (167)
                      .-|+..+++|+|         ....+|.       .   ....+.....|..+++.|-+.+.++..++... +..++.|+
T Consensus       156 ~lPlI~l~dsgG---------ar~qEGi~sl~q~aki~~~l~~~s~~~vP~Isvv~g~~~GG~~as~a~~~-D~i~a~p~  225 (285)
T 2f9i_B          156 RLPFILFSASGG---------ARMQEGIISLMQMGKTSVSLKRHSDAGLLYISYLTHPTTGGVSASFASVG-DINLSEPK  225 (285)
T ss_dssp             TCCEEEEEEECS---------CCGGGHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEEHHHHTTGGGCC-SEEEECTT
T ss_pred             CCCEEEEEeCCC---------cchhhhhhhHhHHHHHHHHHHHHHcCCCCEEEEEeCCccHHHHHHhhhCC-CEEEEeCC
Confidence            469999999999         4444432       2   33334445689999999999887766643332 45678889


Q ss_pred             CceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001           79 SSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ  155 (167)
Q Consensus        79 s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~  155 (167)
                      |.+.+--|..         ++    ..              ++.+.       . +-+=+|+-..+.|+||.|+++.
T Consensus       226 A~i~~aGP~v---------i~----~~--------------~~~~~-------~-e~~~~Ae~~~~~G~iD~Iv~~~  267 (285)
T 2f9i_B          226 ALIGFAGRRV---------IE----QT--------------INEKL-------P-DDFQTAEFLLEHGQLDKVVHRN  267 (285)
T ss_dssp             CBEESSCHHH---------HH----HH--------------HTSCC-------C-TTTTBHHHHHHTTCCSEECCGG
T ss_pred             cEEEEcCHHH---------HH----HH--------------hcccc-------h-HhHhhHHHHHhcCCccEEeChH
Confidence            8877654431         10    00              11111       1 2234688889999999999855

>2x24_A Acetyl-COA carboxylase; fatty acid biosynthesis, ligase, lipid synthesis; HET: X24; 2.40A {Bos taurus} PDB: 3ff6_A* 3tdc_A*

Probab=96.28  E-value=0.003  Score=58.53  Aligned_cols=79  Identities=13%  Similarity=0.063  Sum_probs=59.1

Q ss_pred             CCCCeEEEEcCCCCCCC-CCCCCCCHHHHHHHHHHHhhcCCCeEEEE--ccccccHHHHHHhcCCCC-c---eeeecCCc
Q 031001            8 ASKPIYLYINSSGTQNE-KKESVGAETDAYAIADAMAYCKSKVYTVN--CGMAYGQAAMLLSVGAKG-Y---RGLQPNSS   80 (167)
Q Consensus         8 ~~~~I~l~INS~G~~~~-~~~~~G~v~~g~aI~~~i~~~~~~V~t~~--~G~aaS~a~~i~~ag~~~-~---R~~~p~s~   80 (167)
                      .+-||...+|+||-..+ ..|--|-+..+-.+..++...+.|+.|++  .|.+.+ |++.+++..-+ +   .++.|+|.
T Consensus       482 f~iPlv~LvDtpGf~~G~~aE~~Gi~~~gAkll~A~a~a~VP~itvI~r~Ge~~G-Ga~~~~~~~~~~d~~ev~Awp~A~  560 (793)
T 2x24_A          482 EKLPLMIFANWRGFSGGMKDMYDQVLKFGAYIVDGLRKYRQPVLIYIPPYAEVRG-GSWAVMDTSINPLCIEMYADRESR  560 (793)
T ss_dssp             TTCCEEEECCBCEECCSHHHHHTTHHHHHHHHHHHHHTCCSCEEEEECTTCEEEH-HHHHTTCGGGSTTTEEEEEETTCE
T ss_pred             CCCCEEEEecCCCCCCCHHHHHhhHHHHHHHHHHHHHhcCCCEEEEEecCCcccc-hhHHhhhcccCccHHHHhhhccCE
Confidence            35799999999996544 44555888899999999999999999999  888765 66666643222 2   37888888


Q ss_pred             eeeeccc
Q 031001           81 TKLYLPV   87 (167)
Q Consensus        81 ~miH~p~   87 (167)
                      +.+-.|.
T Consensus       561 ~~VM~pE  567 (793)
T 2x24_A          561 ASVLEPE  567 (793)
T ss_dssp             EESSCHH
T ss_pred             EEecCHH
Confidence            8765554

>3k8x_A Acetyl-COA carboxylase; transferase, carboxyltransferase, AC tepraloxydim, ATP-binding, biotin, fatty acid biosynthesis; HET: B89; 2.30A {Saccharomyces cerevisiae} PDB: 1w2x_A* 3h0s_A* 3h0j_A* 3h0q_A* 1od2_A* 1od4_A* 3pgq_A* 3tvu_A* 3tv5_A* 3tvw_A* 3tz3_A* 1uyr_A* 1uys_A* 1uyt_A 1uyv_A

Probab=93.87  E-value=0.026  Score=52.05  Aligned_cols=78  Identities=14%  Similarity=0.054  Sum_probs=59.9

Q ss_pred             CCCeEEEEcCCCCCCC-CCCCCCCHHHHHHHHHHHhhcCCCeEEEEc--cccccHHHHHHhcCC--CCc--eeeecCCce
Q 031001            9 SKPIYLYINSSGTQNE-KKESVGAETDAYAIADAMAYCKSKVYTVNC--GMAYGQAAMLLSVGA--KGY--RGLQPNSST   81 (167)
Q Consensus         9 ~~~I~l~INS~G~~~~-~~~~~G~v~~g~aI~~~i~~~~~~V~t~~~--G~aaS~a~~i~~ag~--~~~--R~~~p~s~~   81 (167)
                      +-||...+|+||-..+ ..|--|....+-.+..++...+.|+.|++.  |.+.|.|. +.++++  .+.  .++.|+|.+
T Consensus       469 ~iPLv~LvDtpGf~~G~~aE~~Gi~k~gAkll~A~a~a~VP~itVI~RkGe~~GGA~-~am~~~~~ad~~~v~Awp~A~i  547 (758)
T 3k8x_A          469 QLPMMILANWRGFSGGQRDMFNEVLKYGSFIVDALVDYKQPIIIYIPPTGELRGGSW-VVVDPTINADQMEMYADVNARA  547 (758)
T ss_dssp             CCCEEECCCCCEECCSHHHHHTTHHHHHHHHHHHHHTCCSCEEEEECTTCEEETHHH-HTTCGGGSTTTEEEEEETTCEE
T ss_pred             CCCEEEEecCCCCCCCHHHHHccHHHHHHHHHHHHHhCCCCEEEEEecCCccchHHH-HHhCcccCCCHHHHhcCCCCEE
Confidence            5799999999996544 444558889999999999999999999999  99877554 555421  233  788899988


Q ss_pred             eeeccc
Q 031001           82 KLYLPV   87 (167)
Q Consensus        82 miH~p~   87 (167)
                      .+-.|.
T Consensus       548 sVM~pE  553 (758)
T 3k8x_A          548 GVLEPQ  553 (758)
T ss_dssp             ESSCHH
T ss_pred             EccCHH
Confidence            776554

>3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Roseobacter denitrificans}

Probab=90.19  E-value=1.9  Score=38.21  Aligned_cols=64  Identities=11%  Similarity=0.070  Sum_probs=43.7

Q ss_pred             CCCeEEEEcCCCCCCCCCCCCCCHHHHH--------HHHHHHhhc-CCCeEEEEccccccHHHHHHhcCCCCceeeecC-
Q 031001            9 SKPIYLYINSSGTQNEKKESVGAETDAY--------AIADAMAYC-KSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPN-   78 (167)
Q Consensus         9 ~~~I~l~INS~G~~~~~~~~~G~v~~g~--------aI~~~i~~~-~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~-   78 (167)
                      .-|+..+..|.|         ..+.+|.        ..+...+.+ ..|+.+++.|-|++.+++.++.+  +..++.|+ 
T Consensus       140 ~lPvI~l~dSGG---------ARmqeg~~sl~~~~~i~~~~~~~s~~iP~Isvv~Gp~~GG~a~s~a~~--D~vi~~~~~  208 (531)
T 3n6r_B          140 GAPVIGINDSGG---------ARIQEGVDSLAGYGEVFQRNIMASGVVPQISMIMGPCAGGAVYSPAMT--DFIFMVKDS  208 (531)
T ss_dssp             TCCEEEEECCCC---------BCGGGTHHHHHHHHHHHHHHHHTTTTSCEEEEECSCCBGGGGHHHHHS--SEEEEETTT
T ss_pred             CCCEEEEeCCCc---------cccCcccchhhhHHHHHHHHHHHhCCCCEEEEEeCCcchHHHHHhhhC--CEEEEecCC
Confidence            458888889988         5543332        233333332 36999999999999998888877  46677775 


Q ss_pred             Cceee
Q 031001           79 SSTKL   83 (167)
Q Consensus        79 s~~mi   83 (167)
                      +.+.+
T Consensus       209 a~i~~  213 (531)
T 3n6r_B          209 SYMFV  213 (531)
T ss_dssp             CBCBS
T ss_pred             ceEee
Confidence            65544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	167
d1yg6a1	183	c.14.1.1 (A:11-193) Clp protease, ClpP subunit {Es	1e-36
d1tg6a1	193	c.14.1.1 (A:1-193) Clp protease, ClpP subunit {Hum	6e-31
d2cbya1	179	c.14.1.1 (A:15-193) Clp protease, ClpP subunit {My	1e-27
d1y7oa1	192	c.14.1.1 (A:2-193) Clp protease, ClpP subunit {Str	2e-25
d2f6ia1	190	c.14.1.1 (A:177-366) Clp protease, ClpP subunit {P	1e-23

>d1yg6a1 c.14.1.1 (A:11-193) Clp protease, ClpP subunit {Escherichia coli [TaxId: 562]} Length = 183

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Escherichia coli [TaxId: 562]

 Score =  123 bits (309), Expect = 1e-36
 Identities = 55/156 (35%), Positives = 82/156 (52%), Gaps = 10/156 (6%)

Query: 1   MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQ 60
           ++L+ +N  K IYLYINS G         G  T   +I D M + K  V T+  G A   
Sbjct: 38  LFLEAENPEKDIYLYINSPG---------GVITAGMSIYDTMQFIKPDVSTICMGQAASM 88

Query: 61  AAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGT 120
            A LL+ GAKG R   PNS   ++ P+ G   G  TD+   A+++        EL+A  T
Sbjct: 89  GAFLLTAGAKGKRFCLPNSRVMIHQPLGG-YQGQATDIEIHAREILKVKGRMNELMALHT 147

Query: 121 GKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQD 156
           G+  E+I +D +R +++ A EA+ YGL D I+  ++
Sbjct: 148 GQSLEQIERDTERDRFLSAPEAVEYGLVDSILTHRN 183

>d1tg6a1 c.14.1.1 (A:1-193) Clp protease, ClpP subunit {Human (Homo sapiens), mitochondrial [TaxId: 9606]} Length = 193

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

 Score =  108 bits (271), Expect = 6e-31
 Identities = 44/154 (28%), Positives = 73/154 (47%), Gaps = 10/154 (6%)

Query: 1   MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQ 60
           ++L  ++  KPI++YINS G            T   AI D M Y  + + T   G A   
Sbjct: 48  LFLQSESNKKPIHMYINSPGGV---------VTAGLAIYDTMQYILNPICTWCVGQAASM 98

Query: 61  AAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGT 120
            ++LL+ G  G R   PNS   ++ P  G   G  TD+  +A+++    +    + AK T
Sbjct: 99  GSLLLAAGTPGMRHSLPNSRIMIHQPSGGAR-GQATDIAIQAEEIMKLKKQLYNIYAKHT 157

Query: 121 GKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDS 154
            +  + I   ++R +YM   EA  +G+ DK++  
Sbjct: 158 KQSLQVIESAMERDRYMSPMEAQEFGILDKVLVH 191

>d2cbya1 c.14.1.1 (A:15-193) Clp protease, ClpP subunit {Mycobacterium tuberculosis [TaxId: 1773]} Length = 179

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 99.7 bits (248), Expect = 1e-27
 Identities = 48/153 (31%), Positives = 69/153 (45%), Gaps = 10/153 (6%)

Query: 1   MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQ 60
           + L  ++ASK I LYINS G            +   AI D M      + T   GMA   
Sbjct: 35  LLLAAEDASKDISLYINSPGGSI---------SAGMAIYDTMVLAPCDIATYAMGMAASM 85

Query: 61  AAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGT 120
              LL+ G KG R   P++   ++ P+ G  +G   D+  +A+      +    L A+ T
Sbjct: 86  GEFLLAAGTKGKRYALPHARILMHQPL-GGVTGSAADIAIQAEQFAVIKKEMFRLNAEFT 144

Query: 121 GKPKEEIAKDIQRPKYMQAKEAIVYGLADKIID 153
           G+P E I  D  R ++  A EA+ YG  D II 
Sbjct: 145 GQPIERIEADSDRDRWFTAAEALEYGFVDHIIT 177

>d1y7oa1 c.14.1.1 (A:2-193) Clp protease, ClpP subunit {Streptococcus pneumoniae [TaxId: 1313]} Length = 192

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 94.3 bits (234), Expect = 2e-25
 Identities = 47/155 (30%), Positives = 82/155 (52%), Gaps = 10/155 (6%)

Query: 1   MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQ 60
           ++LD  +++K IYLY+N+ G         G+ +   AI D M + K+ V T+  GMA   
Sbjct: 46  LFLDAQDSTKDIYLYVNTPG---------GSVSAGLAIVDTMNFIKADVQTIVMGMAASM 96

Query: 61  AAMLLSVGAKGYRGLQPNSSTKLYLPVVG-RSSGPVTDMWRKAKDLEANAESYIELLAKG 119
             ++ S GAKG R + PN+   ++ P+ G       TDM    + L     +  ++LA+ 
Sbjct: 97  GTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAPEHLLKTRNTLEKILAEN 156

Query: 120 TGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDS 154
           +G+  E++  D +R  +M A+E + YG  D+I+ +
Sbjct: 157 SGQSMEKVHADAERDNWMSAQETLEYGFIDEIMAN 191

>d2f6ia1 c.14.1.1 (A:177-366) Clp protease, ClpP subunit {Plasmodium falciparum [TaxId: 5833]} Length = 190

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Plasmodium falciparum [TaxId: 5833]

 Score = 89.4 bits (221), Expect = 1e-23
 Identities = 42/149 (28%), Positives = 69/149 (46%), Gaps = 10/149 (6%)

Query: 10  KPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGA 69
             I +YINS G             +  AI D   Y KS + T++ G+    A+++L+ G 
Sbjct: 48  NDIKIYINSPGGSI---------NEGLAILDIFNYIKSDIQTISFGLVASMASVILASGK 98

Query: 70  KGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAK 129
           KG R   PN    ++   +G + G   D+  + K++    +     L+  T +  E I K
Sbjct: 99  KGKRKSLPNCRIMIH-QPLGNAFGHPQDIEIQTKEILYLKKLLYHYLSSFTNQTVETIEK 157

Query: 130 DIQRPKYMQAKEAIVYGLADKIIDSQDAA 158
           D  R  YM A EA  YG+ D++I+++   
Sbjct: 158 DSDRDYYMNALEAKQYGIIDEVIETKLPH 186

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	167
d1tg6a1	193	Clp protease, ClpP subunit {Human (Homo sapiens),	100.0
d2cbya1	179	Clp protease, ClpP subunit {Mycobacterium tubercul	100.0
d1y7oa1	192	Clp protease, ClpP subunit {Streptococcus pneumoni	100.0
d1yg6a1	183	Clp protease, ClpP subunit {Escherichia coli [TaxI	100.0
d2f6ia1	190	Clp protease, ClpP subunit {Plasmodium falciparum	100.0
d2f6qa1	245	Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (	98.49
d2a7ka1	230	Carbapenem biosynthes protein CarB {Pectobacterium	98.34
d1dcia_	275	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	98.33
d1hzda_	266	AUH protein {Human (Homo sapiens) [TaxId: 9606]}	98.33
d2fw2a1	258	Chromodomain protein CDY2A {Human (Homo sapiens) [	98.3
d1sg4a1	249	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	98.27
d1nzya_	269	4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp.,	98.22
d1wz8a1	263	Probable enoyl-CoA hydratase TTHA0218 {Thermus the	98.21
d1wdka4	310	Fatty oxidation complex alpha subunit, N-terminal	98.2
d1uiya_	253	Enoyl-CoA hydratase (crotonase) {Thermus thermophi	98.18
d2f9ya1	316	Acetyl-coenzyme A carboxylase carboxyl transferase	98.11
d1pjha_	266	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	98.09
d1szoa_	249	6-oxo camphor hydrolase {Rhodococcus erythropolis	98.0
d1mj3a_	260	Enoyl-CoA hydratase (crotonase) {Rat (Rattus norve	98.0
d1ef8a_	261	Methylmalonyl CoA decarboxylase {Escherichia coli	97.94
d1q52a_	297	Naphthoate synthase MenB {Mycobacterium tuberculos	97.91
d1vrga2	264	Propionyl-CoA carboxylase complex B subunit, PccB	97.73
d1on3a2	264	Methylmalonyl-CoA carboxyltransferase (transcarbox	97.72
d1pixa3	299	Glutaconyl-CoA decarboxylase A subunit {Acidaminoc	97.55
d1xnya2	263	Propionyl-CoA carboxylase complex B subunit, PccB	97.16
d2a7sa2	271	Propionyl-CoA carboxylase complex B subunit, PccB	97.02
d1uyra2	404	Acetyl-coenzyme A carboxylase {Baker's yeast (Sacc	96.27
d1pixa2	287	Glutaconyl-CoA decarboxylase A subunit {Acidaminoc	91.33
d2f9yb1	263	Acetyl-coenzyme A carboxylase carboxyl transferase	89.32
d1on3a1	253	Methylmalonyl-CoA carboxyltransferase (transcarbox	83.11

>d1tg6a1 c.14.1.1 (A:1-193) Clp protease, ClpP subunit {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=100.00  E-value=1.6e-47  Score=300.51  Aligned_cols=145  Identities=31%  Similarity=0.484  Sum_probs=140.8

Q ss_pred             CCcCCCCCCCCeEEEEcCCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCc
Q 031001            1 MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSS   80 (167)
Q Consensus         1 ~~L~~~~~~~~I~l~INS~G~~~~~~~~~G~v~~g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~   80 (167)
                      +||+.+++.+||+|||||||         |++++|++|||+|++++.||+|+|.|.|+|||++|+++|++++|+++|||+
T Consensus        48 ~~l~~~~~~~~I~l~InS~G---------G~v~~g~~i~d~i~~~~~~V~tv~~G~aaS~a~~il~aG~~g~R~~~pns~  118 (193)
T d1tg6a1          48 LFLQSESNKKPIHMYINSPG---------GVVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGTPGMRHSLPNSR  118 (193)
T ss_dssp             HHHHHHCSSSCEEEEEEECC---------BCHHHHHHHHHHHHHSCSCEEEEEEEEEETHHHHHHHTSCTTCEEECTTCE
T ss_pred             HHhcccCCCcEEEEEeecCc---------ccHHHHHHHHHHHHhhcCceEEEEccchHHHHHHHhhcCccCccccCcccH
Confidence            47888999999999999999         999999999999999999999999999999999999999999999999999


Q ss_pred             eeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001           81 TKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ  155 (167)
Q Consensus        81 ~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~  155 (167)
                      +|+|||+ +++.|++.|++.++++++++++.+.++|+++||++.++|+++|++|+||+|+||++|||||+|++.+
T Consensus       119 ~miHq~~-~~~~G~~~di~~~~~el~~~~~~i~~i~a~~Tg~~~~~i~~~~~rD~~lta~EAl~yGliD~Ii~~~  192 (193)
T d1tg6a1         119 IMIHQPS-GGARGQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAMERDRYMSPMEAQEFGILDKVLVHP  192 (193)
T ss_dssp             EEECCCC-CCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHSSCEEECHHHHHHHTSCSEECSSC
T ss_pred             HHhcCCc-cCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhccCccCCHHHHHHcCCCCEEccCC
Confidence            9999998 7899999999999999999999999999999999999999999999999999999999999999763

>d2cbya1 c.14.1.1 (A:15-193) Clp protease, ClpP subunit {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=1.1e-46  Score=292.13  Aligned_cols=144  Identities=34%  Similarity=0.507  Sum_probs=130.8

Q ss_pred             CCcCCCCCCCCeEEEEcCCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCc
Q 031001            1 MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSS   80 (167)
Q Consensus         1 ~~L~~~~~~~~I~l~INS~G~~~~~~~~~G~v~~g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~   80 (167)
                      +||+++++.+||+|+|||||         |+|.+|++|||+|++++.||+|+|.|.|+|+|++|+++|++++|++.|||+
T Consensus        35 ~~l~~~~~~~~I~l~InS~G---------G~v~~gl~i~d~i~~~~~~v~t~~~G~aaS~a~~il~ag~k~~R~~~~~s~  105 (179)
T d2cbya1          35 LLLAAEDASKDISLYINSPG---------GSISAGMAIYDTMVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHAR  105 (179)
T ss_dssp             HHHHHHCSSSCEEEEEEECC---------BCHHHHHHHHHHHHHCSSCEEEEEEEEEETHHHHHHHTSCTTCEEECTTCE
T ss_pred             HHHhccCCCCeEEEEeeCCC---------CCHHHHHHHHHHHHhhccceeeehhhhhhhHHHHHHHcCCCCceEECCchH
Confidence            47888899999999999999         999999999999999999999999999999999999999999999999999


Q ss_pred             eeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCC
Q 031001           81 TKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDS  154 (167)
Q Consensus        81 ~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~  154 (167)
                      +|+|||+ ++++|+..+++..+++++++++.+.++|+++||++.+++.++|++|+||+|+||++|||||+|+++
T Consensus       106 ~miH~~~-~~~~G~~~~i~~~~~~l~~~~~~i~~i~a~~tg~~~~~i~~~~~~d~~l~a~EA~~~GliDeIi~~  178 (179)
T d2cbya1         106 ILMHQPL-GGVTGSAADIAIQAEQFAVIKKEMFRLNAEFTGQPIERIEADSDRDRWFTAAEALEYGFVDHIITR  178 (179)
T ss_dssp             EECCCC-----------CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHTTCEEEHHHHHHHTSCSEECSC
T ss_pred             hhcCCCc-hhcCCccHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHhhcCCceecHHHHHHcCCCcEEecC
Confidence            9999998 789999999999999999999999999999999999999999999999999999999999999975

>d1y7oa1 c.14.1.1 (A:2-193) Clp protease, ClpP subunit {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=100.00  E-value=3.4e-46  Score=292.45  Aligned_cols=145  Identities=33%  Similarity=0.576  Sum_probs=129.1

Q ss_pred             CCcCCCCCCCCeEEEEcCCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCc
Q 031001            1 MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSS   80 (167)
Q Consensus         1 ~~L~~~~~~~~I~l~INS~G~~~~~~~~~G~v~~g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~   80 (167)
                      +||+.+++.+||+|||||||         |++.+|++|||+|++++.||+|+|.|.|+|+|++|+++|++++|+++|||+
T Consensus        46 ~~l~~~~~~~~I~l~InS~G---------G~v~~glai~d~i~~~~~~v~t~~~G~aaS~as~il~aG~~g~R~~~pns~  116 (192)
T d1y7oa1          46 LFLDAQDSTKDIYLYVNTPG---------GSVSAGLAIVDTMNFIKADVQTIVMGMAASMGTVIASSGAKGKRFMLPNAE  116 (192)
T ss_dssp             HHHHHHCTTSCEEEEEEECC---------BCHHHHHHHHHHHHHSSSCEEEEEEEEEETHHHHHHTTSCTTCEEECTTCE
T ss_pred             HHhhhhcccCceeeeecCCC---------CCHHHHHHHHHHHHhcCcceEEEeccccCCccceeeeecCCCccccchHHH
Confidence            47888999999999999999         999999999999999999999999999999999999999999999999999


Q ss_pred             eeeecccccCCcCC--hhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001           81 TKLYLPVVGRSSGP--VTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ  155 (167)
Q Consensus        81 ~miH~p~~~~~~G~--~~dl~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~  155 (167)
                      +|+|||+ ++..|+  ..+++.+++++.++++.+.++|+++||++.+++.++|++|+||+|+||++|||||+|++++
T Consensus       117 ~miHq~~-~~~~G~~~~~~~~~~~~el~~~~~~i~~i~~~~tg~~~~~i~~~~~rd~~lsa~EAleyGliD~Ii~~~  192 (192)
T d1y7oa1         117 YMIHQPM-GGTGGGTQQTDMAIAPEHLLKTRNTLEKILAENSGQSMEKVHADAERDNWMSAQETLEYGFIDEIMANN  192 (192)
T ss_dssp             EECCCCC---------------CHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHSCCCBCHHHHHHHTSCSEECCCC
T ss_pred             HHhhccc-ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHhhcCCceecHHHHHHcCCCcEEecCC
Confidence            9999998 677775  4577888899999999999999999999999999999999999999999999999999864

>d1yg6a1 c.14.1.1 (A:11-193) Clp protease, ClpP subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.8e-45  Score=284.72  Aligned_cols=144  Identities=38%  Similarity=0.575  Sum_probs=139.1

Q ss_pred             CcCCCCCCCCeEEEEcCCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCce
Q 031001            2 WLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSST   81 (167)
Q Consensus         2 ~L~~~~~~~~I~l~INS~G~~~~~~~~~G~v~~g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~   81 (167)
                      ||+.+++.+||+|+|||||         |++++|++|||+|+.++.||+|+|.|.|+|||++|+++|++++|++.|||++
T Consensus        39 ~l~~~~~~~~I~l~InS~G---------G~v~~g~~i~d~i~~~~~~v~tv~~G~aaS~a~~I~~ag~~~~R~~~~ns~~  109 (183)
T d1yg6a1          39 FLEAENPEKDIYLYINSPG---------GVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRV  109 (183)
T ss_dssp             HHHHHCSSSCEEEEEEECC---------BCHHHHHHHHHHHHHSSSCEEEEEEEEEETHHHHHHHTSCTTCEEECTTCEE
T ss_pred             HhhhhccCCceEEEEeCCC---------ccHHHHHHHHHHHHhCCCCEEEEEEEEeHHHHHHHHHcCCCCceeeCCCceE
Confidence            5677888899999999999         9999999999999999999999999999999999999999999999999999


Q ss_pred             eeecccccCCcCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001           82 KLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ  155 (167)
Q Consensus        82 miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~  155 (167)
                      |+|+|+ ++++|++.+++..+++++++.+.+.++|+++||++++++.+++++|+||+|+||++|||||+|++..
T Consensus       110 miH~~~-~~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~tg~~~e~i~~~~~~d~~lta~EAl~~GliD~Ii~~~  182 (183)
T d1yg6a1         110 MIHQPL-GGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSILTHR  182 (183)
T ss_dssp             EECCCE-EEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTSSCEEEEHHHHHHHTSSSEECCCC
T ss_pred             Eecccc-cccccCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhccCccccHHHHHHcCCCcEEeccC
Confidence            999998 7789999999999999999999999999999999999999999999999999999999999999764

>d2f6ia1 c.14.1.1 (A:177-366) Clp protease, ClpP subunit {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Plasmodium falciparum [TaxId: 5833]

Probab=100.00  E-value=4e-44  Score=280.19  Aligned_cols=143  Identities=33%  Similarity=0.487  Sum_probs=129.3

Q ss_pred             CcCCCCCCCCeEEEEcCCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCce
Q 031001            2 WLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSST   81 (167)
Q Consensus         2 ~L~~~~~~~~I~l~INS~G~~~~~~~~~G~v~~g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~   81 (167)
                      ||++++ .+||+|||||||         |+|++|++|||+|+.++.||+|++.|.|+|+|++|+++|+++.|++.|||++
T Consensus        41 ~l~~~~-~~~I~l~INS~G---------G~v~~g~ai~d~i~~~~~~v~tv~~G~aaS~a~~i~~aG~kg~R~~~pns~i  110 (190)
T d2f6ia1          41 YLDNIN-HNDIKIYINSPG---------GSINEGLAILDIFNYIKSDIQTISFGLVASMASVILASGKKGKRKSLPNCRI  110 (190)
T ss_dssp             HHHHHC-CSCEEEEEEECC---------BCHHHHHHHHHHHHHSSSCEEEEEEEEECHHHHHHHHTSCTTCEEECTTCEE
T ss_pred             HHhccC-CCCeEEEEeCch---------hhhhHHHHHHHHHHhhCCceEEEEeccccchhHHHHHhCCCCccccCCCcEE
Confidence            566666 479999999999         9999999999999999999999999999999999999999999999999999


Q ss_pred             eeecccccCCcCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001           82 KLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ  155 (167)
Q Consensus        82 miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~  155 (167)
                      |+|||+ ++.+|+..|++..+++++++++.+.++|+++||++.+++.++|++|+||+|+||++|||||+|+++.
T Consensus       111 miH~~s-~~~~G~~~di~~~~~~l~~~~~~~~~i~a~~tg~~~~~i~~~~~~d~~l~a~EAl~~GliD~Ii~~~  183 (190)
T d2f6ia1         111 MIHQPL-GNAFGHPQDIEIQTKEILYLKKLLYHYLSSFTNQTVETIEKDSDRDYYMNALEAKQYGIIDEVIETK  183 (190)
T ss_dssp             ESSCTT-CSCC--------CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHTTCEECHHHHHHHTSCSEECCCS
T ss_pred             EEcccc-cccCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHhccCCeeecHHHHHHcCCCcEEcccC
Confidence            999998 7889999999999999999999999999999999999999999999999999999999999999863

>d2f6qa1 c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Peroxisomal 3,2-trans-enoyl-CoA isomerase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=1.5e-06  Score=67.52  Aligned_cols=123  Identities=14%  Similarity=0.091  Sum_probs=83.9

Q ss_pred             CeEEEEcCCCCCCCCCCCCCCHH----------------HHHHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCcee
Q 031001           11 PIYLYINSSGTQNEKKESVGAET----------------DAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRG   74 (167)
Q Consensus        11 ~I~l~INS~G~~~~~~~~~G~v~----------------~g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~   74 (167)
                      .+.|.+.+.|..-+.|-.+..+.                ....++..|..++.||.+.+.|.|.+.|+-+++++  +.|+
T Consensus        47 ~v~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kpvIa~v~G~a~GgG~~la~~~--D~~i  124 (245)
T d2f6qa1          47 SIITVLTGNGDYYSSGNDLTNFTDIPPGGVEEKAKNNAVLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLF--DAVY  124 (245)
T ss_dssp             CSEEEEEESTTCSBCCBCC----CCCTTHHHHHHHHHHHHHHHHHHHHHSCCSCEEEEECSCEETHHHHGGGGC--SEEE
T ss_pred             ceEEeecCCCccccCCccchhhhcccccccccccchhhhHHHHHHhhhhhcCCceEEEECCccccccccchhhh--hhhh
Confidence            45677777776666655443331                12357778999999999999999999999999998  5899


Q ss_pred             eecCCceeeecccccCCc--CChhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEe
Q 031001           75 LQPNSSTKLYLPVVGRSS--GPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKII  152 (167)
Q Consensus        75 ~~p~s~~miH~p~~~~~~--G~~~dl~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~  152 (167)
                      +.+++.|.+-...++..-  |...-+          .+.+          ......+++-....++|+||+++||||+|+
T Consensus       125 a~~~a~f~~pe~~~G~~p~~g~~~~l----------~~~~----------g~~~a~~l~l~g~~~~a~eA~~~Glv~~vv  184 (245)
T d2f6qa1         125 ASDRATFHTPFSHLGQSPEGCSSYTF----------PKIM----------SPAKATEMLIFGKKLTAGEACAQGLVTEVF  184 (245)
T ss_dssp             EETTCEEECCTGGGTCCCCTTHHHHH----------HHHH----------CHHHHHHHHTTCCCEEHHHHHHTTSCSEEE
T ss_pred             hhccCeEecccccCCCCccccchhhc----------cccc----------ccchhhhhcccccccccccccccccccccC
Confidence            999998887444322111  111111          1111          233445566677889999999999999999


Q ss_pred             CCc
Q 031001          153 DSQ  155 (167)
Q Consensus       153 ~~~  155 (167)
                      ++.
T Consensus       185 ~~~  187 (245)
T d2f6qa1         185 PDS  187 (245)
T ss_dssp             CTT
T ss_pred             Ccc
Confidence            764

>d2a7ka1 c.14.1.3 (A:1-230) Carbapenem biosynthes protein CarB {Pectobacterium carotovorum [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Carbapenem biosynthes protein CarB
species: Pectobacterium carotovorum [TaxId: 554]

Probab=98.34  E-value=1.7e-06  Score=66.73  Aligned_cols=104  Identities=13%  Similarity=0.115  Sum_probs=72.0

Q ss_pred             HHHHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHH
Q 031001           34 DAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYI  113 (167)
Q Consensus        34 ~g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~  113 (167)
                      ....++..|+.++.||.+.+.|.|.+.|+-+++++  +.|++.++++|.+  |..  ..|-..+...  ..|.+      
T Consensus        82 ~~~~~~~~i~~~~kpvIaav~G~a~GgG~~lal~~--D~~ia~~~a~f~~--pe~--~~G~~p~~g~--~~l~~------  147 (230)
T d2a7ka1          82 RVIDLYQAVLNVNKPTIAAVDGYAIGMGFQFALMF--DQRLMASTANFVM--PEL--KHGIGCSVGA--AILGF------  147 (230)
T ss_dssp             HHHHHHHHHHTCCSCEEEEECSEEETHHHHHHTTS--SEEEEETTCEEEC--CGG--GGTCCCHHHH--HHHHH------
T ss_pred             hhhhhhhcccchhcceeeecccccccccccchhcc--chhhccccchhhh--ccc--cccccccccc--ccccc------
Confidence            45667888999999999999999999999999999  5899999998765  431  1232223221  11211      


Q ss_pred             HHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCchHHH
Q 031001          114 ELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDAAY  159 (167)
Q Consensus       114 ~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~~~~~  159 (167)
                           ..  ......+++-....++++||+++||||+|+++ +++.
T Consensus       148 -----~i--G~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~  185 (230)
T d2a7ka1         148 -----TH--GFSTMQEIIYQCQSLDAPRCVDYRLVNQVVES-SALL  185 (230)
T ss_dssp             -----HH--CHHHHHHHHHHCCCBCHHHHHHHTCCSEEECH-HHHH
T ss_pred             -----cc--ccccccccccccccchHHHHHHhhhcccCCCh-HHHH
Confidence                 11  12223344444677899999999999999874 4443

>d1dcia_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.33  E-value=2.3e-06  Score=67.20  Aligned_cols=106  Identities=19%  Similarity=0.169  Sum_probs=73.2

Q ss_pred             HHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHH
Q 031001           36 YAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIEL  115 (167)
Q Consensus        36 ~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~  115 (167)
                      ..++..|..++.||.+.+.|.|.+.|.-++++|  +-|++.+++.|.+....++..-+...-                ..
T Consensus        97 ~~~~~~i~~~~kPvIaav~G~a~GgG~~lal~~--D~ria~~~a~f~~pe~~~Gl~p~~~~~----------------~~  158 (275)
T d1dcia_          97 QKTFTVIEKCPKPVIAAIHGGCIGGGVDLISAC--DIRYCTQDAFFQVKEVDVGLAADVGTL----------------QR  158 (275)
T ss_dssp             HHHHHHHHHSSSCEEEEECSEEETHHHHHHTTS--SEEEEETTCEEECCGGGGTSCCCSSHH----------------HH
T ss_pred             HHHHHHHHhcCCCEEEEEeeEeehhhHHHHhhc--CchhhccCccccchhcccccccccccc----------------cc
Confidence            357788999999999999999999999999999  589999999887644433222111100                00


Q ss_pred             HHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCchHHHh
Q 031001          116 LAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDAAYE  160 (167)
Q Consensus       116 ~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~~~~~~  160 (167)
                      +.+..| .......++-....++++||++.||||+|.++.+.+.+
T Consensus       159 ~~~~~g-~~~~~~~ll~~g~~~~a~eA~~~Glv~~v~~~~~~l~~  202 (275)
T d1dcia_         159 LPKVIG-NRSLVNELTFTARKMMADEALDSGLVSRVFPDKDVMLN  202 (275)
T ss_dssp             GGGTCS-CHHHHHHHHHHCCEEEHHHHHHHTSSSEEESSHHHHHH
T ss_pred             cccccc-cccccccccccccccchhhhccCCCceeeeehhhhhhh
Confidence            111111 11222335555788999999999999999987665443

>d1hzda_ c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: AUH protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=1.4e-06  Score=68.48  Aligned_cols=104  Identities=15%  Similarity=0.133  Sum_probs=73.9

Q ss_pred             HHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHH
Q 031001           33 TDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESY  112 (167)
Q Consensus        33 ~~g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~  112 (167)
                      .....++..|..++.||.+.+.|.|.+.|.-+++++  +-|++.++++|.+-...++..-+-. ...    .|       
T Consensus        86 ~~~~~~~~~i~~~~kpvIaav~G~a~GgG~~lal~~--D~~ia~~~a~f~~pe~~~G~~p~~g-~~~----~l-------  151 (266)
T d1hzda_          86 SKIRAVINDIANLPVPTIAAIDGLALGGGLELALAC--DIRVAASSAKMGLVETKLAIIPGGG-GTQ----RL-------  151 (266)
T ss_dssp             HHHHHHHHHHHTCSSCEEEEESEEEETHHHHHHHHS--SEEEEETTCEEECCGGGGTCCCCSS-HHH----HH-------
T ss_pred             hHHHHHHHHHhcCCcccccccccccccccceecccc--ceeeecCCcEEeecccceeecCCcc-cee----ee-------
Confidence            455678888999999999999999999999999999  5799999998876443322221111 100    00       


Q ss_pred             HHHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCch
Q 031001          113 IELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQD  156 (167)
Q Consensus       113 ~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~~  156 (167)
                          .+..  ......+++-....++|+||+++||||+|+++.+
T Consensus       152 ----~~~i--g~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~  189 (266)
T d1hzda_         152 ----PRAI--GMSLAKELIFSARVLDGKEAKAVGLISHVLEQNQ  189 (266)
T ss_dssp             ----HHHH--CHHHHHHHHHHTCEEEHHHHHHHTSCSEEECCCT
T ss_pred             ----hhhh--HHHHHHhhhccCCccCHHHhhcccccccccChhh
Confidence                0111  2334444555678999999999999999998753

>d2fw2a1 c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Chromodomain protein CDY2A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=2.9e-06  Score=66.38  Aligned_cols=100  Identities=15%  Similarity=0.130  Sum_probs=70.7

Q ss_pred             HHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHH
Q 031001           36 YAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIEL  115 (167)
Q Consensus        36 ~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~  115 (167)
                      ..++..|..++.||.+.+.|.|.+.|+.+++++  +-|++.++++|.+....++..-+...-     ..+          
T Consensus        88 ~~~~~~i~~~~kP~Iaav~G~a~GgG~~lal~~--D~~ia~~~a~f~~pe~~~Gl~p~~g~~-----~~l----------  150 (258)
T d2fw2a1          88 KNFVNTFIQFKKPIVVSVNGPAIGLGASILPLC--DLVWANEKAWFQTPYTTFGQSPDGCSS-----ITF----------  150 (258)
T ss_dssp             HHHHHHHHHCCSCEEEEECSCEETHHHHTGGGS--SEEEEETTCEEECCHHHHTCCCCTTHH-----HHH----------
T ss_pred             HHHHHhhhccceeeeeecccccccccccccccc--cccceecccceeecccccccccccccc-----ccc----------
Confidence            456778889999999999999999999999999  579999999887644433322111100     001          


Q ss_pred             HHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001          116 LAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ  155 (167)
Q Consensus       116 ~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~  155 (167)
                       .+..  ......+++-....++++||+++||||+|+++.
T Consensus       151 -~r~i--g~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~  187 (258)
T d2fw2a1         151 -PKMM--GKASANEMLIAGRKLTAREACAKGLVSQVFLTG  187 (258)
T ss_dssp             -HHHH--CHHHHHHHHTTCCEEEHHHHHHTTSCSEEECST
T ss_pred             -hhhc--CccccchhhccCccccccccccccccccccccc
Confidence             1111  223334456667889999999999999998754

>d1sg4a1 c.14.1.3 (A:2-250) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=98.27  E-value=3e-06  Score=66.03  Aligned_cols=104  Identities=13%  Similarity=0.161  Sum_probs=72.6

Q ss_pred             HHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHH
Q 031001           33 TDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESY  112 (167)
Q Consensus        33 ~~g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~  112 (167)
                      .....++..|..++.||.+.+.|.|.+.|+-|++++  +.|++.+++.|.+..|...  .|-..+...    ..      
T Consensus        83 ~~~~~~~~~l~~~~kpvIa~v~G~a~GgG~~lal~~--D~~ia~~~a~f~~~~pe~~--~Gl~p~~g~----~~------  148 (249)
T d1sg4a1          83 KAVQELWLRLYQSNLVLVSAINGACPAGGCLVALTC--DYRILADNPRYCIGLNETQ--LGIIAPFWL----KD------  148 (249)
T ss_dssp             HHHHHHHHHHHTCSSEEEEEECEEBCHHHHHHHTTS--SEEEEECCTTCCBSCCGGG--GTCCCCHHH----HH------
T ss_pred             hhhHHHHHhhhcCccccchhhccccccccccccccc--ccceeeccccccccccccc--ccccccccc----cc------
Confidence            444467788899999999999999999999999999  5899999999988777521  232222110    00      


Q ss_pred             HHHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCC
Q 031001          113 IELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDS  154 (167)
Q Consensus       113 ~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~  154 (167)
                        .+.++.  ......+++-....++++||+++||||+|+++
T Consensus       149 --~l~~~i--G~~~a~~lll~g~~~~a~~A~~~Glv~~v~~~  186 (249)
T d1sg4a1         149 --TLENTI--GHRAAERALQLGLLFPPAEALQVGIVDQVVPE  186 (249)
T ss_dssp             --HHHHHH--CHHHHHHHHHHTCCBCHHHHHHHTSSSEEECG
T ss_pred             --cccccc--ccccccccccccccccHHHHHhhccccccCCh
Confidence              111122  22223344445677899999999999999964

>d1nzya_ c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp., strain CBS-3 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: 4-Chlorobenzoyl-CoA dehalogenase
species: Pseudomonas sp., strain CBS-3 [TaxId: 306]

Probab=98.22  E-value=3.5e-06  Score=66.15  Aligned_cols=103  Identities=12%  Similarity=0.072  Sum_probs=69.6

Q ss_pred             HHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHH
Q 031001           36 YAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIEL  115 (167)
Q Consensus        36 ~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~  115 (167)
                      ..++..|..++.||.+.+.|.|.+.|..+++++  +.|++.++++|.+.....+...+...-  .....+      +-  
T Consensus        90 ~~~~~~i~~~~kPvIaav~G~a~GgG~~lal~~--D~ria~~~a~~~~~~~~~g~~~~~g~~--~~l~~~------ig--  157 (269)
T d1nzya_          90 HQMIHKIIRVKRPVLAAINGVAAGGGLGISLAS--DMAICADSAKFVCAWHTIGIGNDTATS--YSLARI------VG--  157 (269)
T ss_dssp             HHHHHHHHHCSSCEEEEECSEEETHHHHHHHHS--SEEEEETTCEEECCHHHHTCCCCTTHH--HHHHHH------HH--
T ss_pred             HHHHHHHHhhcchhehhhhhhcCCCceeeeecc--cHhhhhhhhhhcccccccccccccccc--cccccc------cC--
Confidence            357778899999999999999999999999999  589999999887765543222111111  001111      10  


Q ss_pred             HHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCchHHH
Q 031001          116 LAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDAAY  159 (167)
Q Consensus       116 ~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~~~~~  159 (167)
                              .....+++-...-++|+||+++||||+|.+ .+++.
T Consensus       158 --------~~~a~~l~ltg~~i~a~eA~~~Glv~~vv~-~~~l~  192 (269)
T d1nzya_         158 --------MRRAMELMLTNRTLYPEEAKDWGLVSRVYP-KDEFR  192 (269)
T ss_dssp             --------HHHHHHHHHHCCCBCHHHHHHHTSCSCEEC-HHHHH
T ss_pred             --------hhhhhhccccccccchhHHHHcCCcccccc-ccccc
Confidence                    111123333456679999999999999986 34443

>d1wz8a1 c.14.1.3 (A:2-264) Probable enoyl-CoA hydratase TTHA0218 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Probable enoyl-CoA hydratase TTHA0218
species: Thermus thermophilus [TaxId: 274]

Probab=98.21  E-value=2.9e-06  Score=66.55  Aligned_cols=101  Identities=12%  Similarity=-0.014  Sum_probs=69.7

Q ss_pred             HHHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHH
Q 031001           35 AYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIE  114 (167)
Q Consensus        35 g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~  114 (167)
                      ...++..|..++.||.+.+.|.|.+.|..+++++  +-|++.++++|.+....++..-+-. -.     .+  +.     
T Consensus        92 ~~~~~~~i~~~~kPvIa~v~G~a~GgG~~lal~~--D~~ia~~~a~f~~pe~~~Gl~p~~~-~~-----~~--l~-----  156 (263)
T d1wz8a1          92 ARDLVLGPLNFPRPVVAAVEKVAVGAGLALALAA--DIAVVGKGTRLLDGHLRLGVAAGDH-AV-----LL--WP-----  156 (263)
T ss_dssp             HHHHHHHHHHSSSCEEEEECSEEETHHHHHHHHS--SEEEEETTCEEECCHHHHTSCCTTT-HH-----HH--TH-----
T ss_pred             hhHHHHHhhhhhcceeeecccccccccccccccc--ccccccccccccccccccccccccc-cc-----cc--cc-----
Confidence            3456778889999999999999999999999999  5799999998877544322211111 00     00  00     


Q ss_pred             HHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001          115 LLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ  155 (167)
Q Consensus       115 ~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~  155 (167)
                         +..  ......+++-....++++||+++||||+|.++.
T Consensus       157 ---~~~--G~~~a~~l~l~g~~i~a~eA~~~Glv~~vv~~~  192 (263)
T d1wz8a1         157 ---LLV--GMAKAKYHLLLNEPLTGEEAERLGLVALAVEDE  192 (263)
T ss_dssp             ---HHH--CHHHHHHHHHHTCCEEHHHHHHHTSSSEEECGG
T ss_pred             ---ccc--ccchhhhhcccccccchhHHHhcCCcccccchh
Confidence               001  222333445556678999999999999998753

>d1wdka4 c.14.1.3 (A:1-310) Fatty oxidation complex alpha subunit, N-terminal domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Fatty oxidation complex alpha subunit, N-terminal domain
species: Pseudomonas fragi [TaxId: 296]

Probab=98.20  E-value=3.4e-06  Score=67.87  Aligned_cols=99  Identities=14%  Similarity=0.096  Sum_probs=70.6

Q ss_pred             HHHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCC--cCChhHHHHHHHHHHHHHHHH
Q 031001           35 AYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRS--SGPVTDMWRKAKDLEANAESY  112 (167)
Q Consensus        35 g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~--~G~~~dl~~~~~~l~~~~~~~  112 (167)
                      ...++..|+.++.||.+.+.|.|.+.|.-++++|  +.|++.+++.|.+-...++..  .|-..-+.       +     
T Consensus        92 ~~~~~~~l~~~~kPvIaav~G~a~GgG~elal~c--D~ria~~~a~f~~pe~~~Gl~P~~gg~~~L~-------r-----  157 (310)
T d1wdka4          92 ANKIFSDFEDLNVPTVAAINGIALGGGLEMCLAA--DFRVMADSAKIGLPEVKLGIYPGFGGTVRLP-------R-----  157 (310)
T ss_dssp             HHHHHHHHHTCSSCEEEEECSCEETHHHHHHHTS--SEEEEETTCEEECGGGGGTCCCCSSHHHHHH-------H-----
T ss_pred             HHHHHHHhhcCCccceeeccccccccccccchhh--hhhhccccceecccccccCCCccccchhhhh-------h-----
Confidence            3467888999999999999999999999999999  589999999877644333221  12121111       1     


Q ss_pred             HHHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001          113 IELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ  155 (167)
Q Consensus       113 ~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~  155 (167)
                            ..  ......+++-....++++||+++||||+|+++.
T Consensus       158 ------~i--G~~~a~~lll~g~~~~a~eA~~~Glv~~vv~~~  192 (310)
T d1wdka4         158 ------LI--GVDNAVEWIASGKENRAEDALKVSAVDAVVTAD  192 (310)
T ss_dssp             ------HH--CHHHHHHHHHHCCCEEHHHHHHTTSSSEEECGG
T ss_pred             ------hh--hhhhhhhhhccccccCHHHHhhccCccEEccHH
Confidence                  01  222333444456778999999999999998753

>d1uiya_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Thermus thermophilus [TaxId: 274]

Probab=98.18  E-value=2.4e-06  Score=66.05  Aligned_cols=102  Identities=13%  Similarity=0.075  Sum_probs=72.8

Q ss_pred             HHHHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHH
Q 031001           34 DAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYI  113 (167)
Q Consensus        34 ~g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~  113 (167)
                      ....++..|..++.||.+.+.|.|.+.|+.|.++|  +-|++.+++.|.++....    |-.....  ...|        
T Consensus        82 ~~~~~~~~i~~~~kpvIaav~G~a~GgG~~lal~~--D~ria~~~a~~~~~e~~~----g~~~~~~--~~~l--------  145 (253)
T d1uiya_          82 SLMRLFHRVYTYPKPTVAAVNGPAVAGGAGLALAC--DLVVMDEEARLGYTEVKI----GFVAALV--SVIL--------  145 (253)
T ss_dssp             HHHHHHHHHHHCSSCEEEEECSCEETHHHHHHHTS--SEEEEETTCEEECCHHHH----TCCCHHH--HHHH--------
T ss_pred             hhhhhhhHHhcCCCCEEEEeCeEEehhhHHHHhhh--hhhhhhhhhHHhhhhccc----ccccccc--hhhh--------
Confidence            34556778899999999999999999999999999  579999999888765542    2221110  0011        


Q ss_pred             HHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCch
Q 031001          114 ELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQD  156 (167)
Q Consensus       114 ~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~~  156 (167)
                         .+.  .......+++-....++++||+++||||+|.+..+
T Consensus       146 ---~~~--~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~  183 (253)
T d1uiya_         146 ---VRA--VGEKAAKDLLLTGRLVEAREAKALGLVNRIAPPGK  183 (253)
T ss_dssp             ---HHH--SCHHHHHHHHHHCCEEEHHHHHHHTSCSEEECTTC
T ss_pred             ---hcc--cCHHHHHHHhhcCcCCCHHHHHHhCCCcccccccc
Confidence               111  13334445555577899999999999999987653

>d2f9ya1 c.14.1.4 (A:4-319) Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, AccA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, AccA
species: Escherichia coli [TaxId: 562]

Probab=98.11  E-value=1.4e-06  Score=71.02  Aligned_cols=116  Identities=18%  Similarity=0.157  Sum_probs=83.8

Q ss_pred             CCCeEEEEcCCCCCCC-CCCCCCCHHHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeeccc
Q 031001            9 SKPIYLYINSSGTQNE-KKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPV   87 (167)
Q Consensus         9 ~~~I~l~INS~G~~~~-~~~~~G~v~~g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~   87 (167)
                      +-||..+|+|||---+ ..|-.|...++-.....+-.++.|+.+++.|.+.|.|++.++.+  +..++++||++.+-.|.
T Consensus       151 ~~Pii~~vDtpG~~~g~~~E~~g~~~~~a~~~~~~~~~~vP~i~vv~g~g~~gga~a~~~~--d~v~m~~~a~~svispE  228 (316)
T d2f9ya1         151 KMPIITFIDTPGAYPGVGAEERGQSEAIARNLREMSRLGVPVVCTVIGEGGSGGALAIGVG--DKVNMLQYSTYSVISPE  228 (316)
T ss_dssp             TCCEEEEEEESCSCCSHHHHHTTHHHHHHHHHHHHHTCSSCEEEEEEEEEEHHHHHTTCCC--SEEEECTTCEEESSCHH
T ss_pred             CcceEEEEecCcccCCcccccccHHHHHHHHHHHHHhCCCceEEEEEhhhhchhhhhhhhh--hHHHHHhhhHHhhccch
Confidence            4699999999995533 45566888888888889999999999999999999999988777  57889999988765553


Q ss_pred             ccCCcCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCC
Q 031001           88 VGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDS  154 (167)
Q Consensus        88 ~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~  154 (167)
                       +    -++   +.++                ......+..+.|.    +++++.+++|+||+|+..
T Consensus       229 -g----~As---ILwk----------------d~~~a~eaAealk----lta~dL~~lgiIDeII~E  267 (316)
T d2f9ya1         229 -G----CAS---ILWK----------------SADKAPLAAEAMG----IIRPRLKELKLIDSIIPE  267 (316)
T ss_dssp             -H----HHH---HHSS----------------CSTTHHHHHHHHT----CSHHHHHTTTSCSCCCCC
T ss_pred             -h----hhh---Hhhc----------------cchhhcchHHHHh----hhhHHHHHcCchhhcccC
Confidence             1    111   0110                1111122222222    778899999999999954

>d1pjha_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.09  E-value=9.2e-06  Score=63.49  Aligned_cols=100  Identities=13%  Similarity=0.027  Sum_probs=68.2

Q ss_pred             HHHHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecC-CceeeecccccCC--cCChhHHHHHHHHHHHHHH
Q 031001           34 DAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPN-SSTKLYLPVVGRS--SGPVTDMWRKAKDLEANAE  110 (167)
Q Consensus        34 ~g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~-s~~miH~p~~~~~--~G~~~dl~~~~~~l~~~~~  110 (167)
                      ....+++.|..++.||.+.+.|.|.+.|+.|+++|  +-|++.+. +.|.+....++-.  .|...-             
T Consensus        96 ~~~~~~~~l~~~~kP~IAav~G~a~GgG~~lal~~--D~~ia~~~~~~~~~pe~~lGl~p~~g~~~~-------------  160 (266)
T d1pjha_          96 RNVYVTDAFIKHSKVLICCLNGPAIGLSAALVALC--DIVYSINDKVYLLYPFANLGLITEGGTTVS-------------  160 (266)
T ss_dssp             HHHHHHHHHHHCCSEEEEEECSCEEHHHHHHHHHS--SEEEESSTTCEEECCHHHHTCCCCTTHHHH-------------
T ss_pred             HHHHHHHHHHhcchhhhhhhhcccccccccchhcc--chhhhhhccccccccccccccccccccccc-------------
Confidence            34457888999999999999999999999999999  57898775 4555533322211  121111             


Q ss_pred             HHHHHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001          111 SYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ  155 (167)
Q Consensus       111 ~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~  155 (167)
                           +.+..  ......+++-....++|+||+++||||+|++..
T Consensus       161 -----l~r~~--g~~~a~~llltg~~~~a~eA~~~Glv~~v~~~~  198 (266)
T d1pjha_         161 -----LPLKF--GTNTTYECLMFNKPFKYDIMCENGFISKNFNMP  198 (266)
T ss_dssp             -----HHHHH--CHHHHHHHHHTTCCEEHHHHHHTTCCSEECCCC
T ss_pred             -----ccccc--ccchhhhhhccCCcCCHHHHHHCCCEeEeeCch
Confidence                 11111  223334445557789999999999999998754

>d1szoa_ c.14.1.3 (A:) 6-oxo camphor hydrolase {Rhodococcus erythropolis [TaxId: 1833]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: 6-oxo camphor hydrolase
species: Rhodococcus erythropolis [TaxId: 1833]

Probab=98.00  E-value=1.8e-05  Score=61.47  Aligned_cols=105  Identities=10%  Similarity=0.038  Sum_probs=67.1

Q ss_pred             HHHHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHH
Q 031001           34 DAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYI  113 (167)
Q Consensus        34 ~g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~  113 (167)
                      ....++..|..++.||.+.+.|.|.+ |..+++++  +.|++.+++.|... |...  .|-..+.... ..+        
T Consensus        93 ~~~~l~~~i~~~~~pvIa~v~g~~~G-G~~l~l~~--D~ria~~~a~f~~~-pe~~--~g~~p~~g~~-~~l--------  157 (249)
T d1szoa_          93 EGQRLLNNLLSIEVPVIAAVNGPVTN-APEIPVMS--DIVLAAESATFQDG-PHFP--SGIVPGDGAH-VVW--------  157 (249)
T ss_dssp             HHHHHHHHHHHCCSCEEEEECSCBCS-STHHHHTS--SEEEEETTCEEECT-TSGG--GTCCCTTTHH-HHH--------
T ss_pred             hhhhhhhhcccCcccceeeecccccc-cccccccc--ccccccCCcEEEEe-eccc--cccccccccc-ccc--------
Confidence            45677888999999999999888776 55677777  58999999998643 3211  1111111000 001        


Q ss_pred             HHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCchHHH
Q 031001          114 ELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDAAY  159 (167)
Q Consensus       114 ~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~~~~~  159 (167)
                         .+..  ......+++-....++++||+++||||+|.++ +++.
T Consensus       158 ---~r~i--g~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~l~  197 (249)
T d1szoa_         158 ---PHVL--GSNRGRYFLLTGQELDARTALDYGAVNEVLSE-QELL  197 (249)
T ss_dssp             ---HHHH--CHHHHHHHHHTTCEEEHHHHHHHTSCSEEECH-HHHH
T ss_pred             ---cccc--CccceeeecccCCCCCHHHHHHhCCcCcccCH-HHHH
Confidence               1111  22333455556777999999999999999875 4443

>d1mj3a_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.00  E-value=5e-06  Score=64.48  Aligned_cols=97  Identities=16%  Similarity=0.108  Sum_probs=66.6

Q ss_pred             HHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCC--cCChhHHHHHHHHHHHHHHHHHHH
Q 031001           38 IADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRS--SGPVTDMWRKAKDLEANAESYIEL  115 (167)
Q Consensus        38 I~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~--~G~~~dl~~~~~~l~~~~~~~~~~  115 (167)
                      +++.|..++.||.+.+.|.|.+.|..|+++|  +-|++.++++|.+-...++..  .|...-+.   +-+          
T Consensus        89 ~~~~~~~~~kPvIaav~G~a~GgG~~lal~~--D~~ia~~~a~f~~pe~~~Gl~p~~~~~~~l~---~~i----------  153 (260)
T d1mj3a_          89 HWDHITRIKKPVIAAVNGYALGGGCELAMMC--DIIYAGEKAQFGQPEILLGTIPGAGGTQRLT---RAV----------  153 (260)
T ss_dssp             GGGGGGGCSSCEEEEECSEEETHHHHHHHHS--SEEEEETTCEEECGGGGGTCCCCSSTTTHHH---HHH----------
T ss_pred             HHHHhccCCCeEEEEEcCeEeHHHHHHHHHC--CEEEEcCCCEEECchhccCcCCcccHHHHHH---HHh----------
Confidence            4567888899999999999999999999999  579999999887743332211  12222221   001          


Q ss_pred             HHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCch
Q 031001          116 LAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQD  156 (167)
Q Consensus       116 ~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~~  156 (167)
                             ......+++-....++++||+++||||+|.+..+
T Consensus       154 -------g~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~  187 (260)
T d1mj3a_         154 -------GKSLAMEMVLTGDRISAQDAKQAGLVSKIFPVET  187 (260)
T ss_dssp             -------CHHHHHHHHHHCCCEEHHHHHHHTSCSEEECTTT
T ss_pred             -------CHHHHHHHHHcCcccCchhhccCCCceeeecccc
Confidence                   1111223333356789999999999999987653

>d1ef8a_ c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Methylmalonyl CoA decarboxylase
species: Escherichia coli [TaxId: 562]

Probab=97.94  E-value=8e-06  Score=63.82  Aligned_cols=103  Identities=11%  Similarity=0.134  Sum_probs=71.2

Q ss_pred             HHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHH
Q 031001           33 TDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESY  112 (167)
Q Consensus        33 ~~g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~  112 (167)
                      .....++..|..++.||.+.+.|.|.+.|..++++|  +-|++.+++.|.+-.+.++...+ .--.              
T Consensus        83 ~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lal~c--D~ria~~~a~~~~pe~~~Gl~~~-~~~~--------------  145 (261)
T d1ef8a_          83 DPLRQITRMIQKFPKPIISMVEGSVWGGAFEMIMSS--DLIIAASTSTFSMTPVNLGVPYN-LVGI--------------  145 (261)
T ss_dssp             SHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHS--SEEEEETTCEEECCHHHHTCCCC-HHHH--------------
T ss_pred             cchhhhHHHHHhCchhhhhcccccccchhhhhhhhh--hhhhhhHhHHHhhhhcccccccc-cccc--------------
Confidence            445689999999999999999999999999999999  57999999987654333221111 1000              


Q ss_pred             HHHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001          113 IELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ  155 (167)
Q Consensus       113 ~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~  155 (167)
                       ..+.+.  .......+++-....++|+||+++||||+|.++.
T Consensus       146 -~~l~r~--~g~~~a~~~~l~g~~~~a~eA~~~Glv~~vv~~~  185 (261)
T d1ef8a_         146 -HNLTRD--AGFHIVKELIFTASPITAQRALAVGILNHVVEVE  185 (261)
T ss_dssp             -HTTSSS--SCHHHHHHHHHHCCCEEHHHHHHTTSCSEEECHH
T ss_pred             -cccccc--cCccccccccccCceEcHHHHHHcCCcceeeech
Confidence             001111  1222333444456788999999999999998654

>d1q52a_ c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Naphthoate synthase MenB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.91  E-value=2.7e-05  Score=61.71  Aligned_cols=99  Identities=13%  Similarity=0.046  Sum_probs=68.1

Q ss_pred             HHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCC-ceeeecccccCCc-CChhHHHHHHHHHHHHHHHHH
Q 031001           36 YAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNS-STKLYLPVVGRSS-GPVTDMWRKAKDLEANAESYI  113 (167)
Q Consensus        36 ~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s-~~miH~p~~~~~~-G~~~dl~~~~~~l~~~~~~~~  113 (167)
                      ..++..|..++.||.+.+.|.|.+.|+.++++|  +.|++.+.+ .|.+....++..- +.....      |.+      
T Consensus       120 ~~~~~~i~~~~kPvIaav~G~a~GGG~~lal~~--D~~ia~~~~~~f~~pe~~~Gl~p~~~~~~~------L~r------  185 (297)
T d1q52a_         120 LEVQRLIRFMPKVVICLVNGWAAGGGHSLHVVC--DLTLASREYARFKQTDADVGSFDGGYGSAY------LAR------  185 (297)
T ss_dssp             HHHHHHHHHSSSEEEEEECSEEETHHHHHHHHS--SEEEEETTTCEEECCGGGGTCCCCSTTTHH------HHH------
T ss_pred             HHHHHHHHhcCCeEEEEEcceeeeccchhhhhh--hccccccccccceeeeeccccccccccccc------ccc------
Confidence            357888899999999999999999999999999  579998865 4556444433221 111111      111      


Q ss_pred             HHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001          114 ELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ  155 (167)
Q Consensus       114 ~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~  155 (167)
                           ..  ......+++-....++++||+++||||+|+++.
T Consensus       186 -----~i--G~~~a~~llltg~~~~a~eA~~~Glv~~vv~~~  220 (297)
T d1q52a_         186 -----QV--GQKFAREIFFLGRTYTAEQMHQMGAVNAVAEHA  220 (297)
T ss_dssp             -----HH--CHHHHHHHHHHCCEECHHHHHHHTSCSEEECGG
T ss_pred             -----cc--CccceeeccccccccchHhhhhhccccccCchH
Confidence                 00  122233444557889999999999999998754

>d1vrga2 c.14.1.4 (A:252-515) Propionyl-CoA carboxylase complex B subunit, PccB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Thermotoga maritima [TaxId: 2336]

Probab=97.73  E-value=2.9e-05  Score=61.45  Aligned_cols=127  Identities=19%  Similarity=0.255  Sum_probs=82.4

Q ss_pred             CCCeEEEEcCCCCCCC-CCCCCCCHHHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhcC--CCCceeeecCCceeeec
Q 031001            9 SKPIYLYINSSGTQNE-KKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVG--AKGYRGLQPNSSTKLYL   85 (167)
Q Consensus         9 ~~~I~l~INS~G~~~~-~~~~~G~v~~g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag--~~~~R~~~p~s~~miH~   85 (167)
                      +-||...+|+||.-.+ ..|--|-+..+-.+..++...+.|..+++.|.+.|.|.+.+++.  ..+..++.|++.+.+-.
T Consensus       102 ~iPli~l~DtpGf~~G~~~E~~g~~~~ga~~~~a~a~~~vP~i~viir~~yG~g~~am~~~~~~~d~~~awP~a~~~vm~  181 (264)
T d1vrga2         102 NIPILTFVDTPGYLPGVAQEHGGIIRHGAKLLYAYSEATVPKITVILRKAYGGAYIAMGSKHLGADMVLAWPSAEIAVMG  181 (264)
T ss_dssp             TCCEEEEEEECCBCCCHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEESSC
T ss_pred             CCceEEEeecccccccHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEeCCcccHHhhhccCCccCCCeeeeccceeEEecC
Confidence            4589999999996544 34555888999999999999999999999999999888766541  23566777777776655


Q ss_pred             ccccCCcCChhHHHHHHHHHHHHH---HHHHHHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001           86 PVVGRSSGPVTDMWRKAKDLEANA---ESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ  155 (167)
Q Consensus        86 p~~~~~~G~~~dl~~~~~~l~~~~---~~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~  155 (167)
                      |. +     +..+ .+.+++...+   +...+.+.+           +  .+..-++-.|.+.|++|.||++.
T Consensus       182 pe-~-----aa~v-~~~~~l~~~~~~~~~~~~~~~~-----------~--~e~~~~~~~aa~~g~iD~VIdP~  234 (264)
T d1vrga2         182 PE-G-----AANI-IFKREIEASSNPEETRRKLIEE-----------Y--KQQFANPYIAASRGYVDMVIDPR  234 (264)
T ss_dssp             HH-H-----HHHH-HTHHHHHHSSCHHHHHHHHHHH-----------H--HHHTSSHHHHHHTTSSSEECCGG
T ss_pred             HH-H-----hhhh-hhhhhhhhhhCcHHHHHHHHHH-----------H--HHHhcCHHHHHHcCCCCeeECHH
Confidence            54 1     1111 0111221111   111111110           0  11224688999999999999865

>d1on3a2 c.14.1.4 (A:261-524) Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) {Propionibacterium freudenreichii [TaxId: 1744]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S)
species: Propionibacterium freudenreichii [TaxId: 1744]

Probab=97.72  E-value=2.7e-05  Score=61.63  Aligned_cols=130  Identities=16%  Similarity=0.146  Sum_probs=82.2

Q ss_pred             CCCeEEEEcCCCCCCC-CCCCCCCHHHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhcCC--CCceeeecCCceeeec
Q 031001            9 SKPIYLYINSSGTQNE-KKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGA--KGYRGLQPNSSTKLYL   85 (167)
Q Consensus         9 ~~~I~l~INS~G~~~~-~~~~~G~v~~g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~--~~~R~~~p~s~~miH~   85 (167)
                      +-||...+|+||-..+ ..|--|.+..+-.++.++...+.|..|+++|.+.+.|.+.+++..  .+.+++.|++.+.+-.
T Consensus       102 ~iPlv~l~D~pGf~~G~~~E~~g~i~~ga~~~~a~a~~~vP~itvi~rkayG~g~~am~g~~~~~d~~~aWP~A~~~vMg  181 (264)
T d1on3a2         102 NIPLVQLVDVPGFLPGVQQEYGGIIRHGAKMLYAYSEATVPKITVVLRKAYGGSYLAMCNRDLGADAVYAWPSAEIAVMG  181 (264)
T ss_dssp             TCCEEEEEEECCBCCCHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHTTTCGGGTCSEEEECTTCEEESSC
T ss_pred             CCceEEEeccccccccHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeccccCccccccccccCChhheeeHHhhHhhhcc
Confidence            4699999999996644 445558889999999999999999999999999998887766432  2345666666665543


Q ss_pred             ccccCCcCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001           86 PVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ  155 (167)
Q Consensus        86 p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~  155 (167)
                      |. +     +..+ .+.+++...++.-..        ..+.+++..  +.+-+|-.|.+.|.||+||++.
T Consensus       182 ~E-g-----aa~v-~~~~el~a~~~~~~~--------~~~~~~e~~--~~~~~p~~aA~~g~iD~VIdP~  234 (264)
T d1on3a2         182 AE-G-----AANV-IFRKEIKAADDPDAM--------RAEKIEEYQ--NAFNTPYVAAARGQVDDVIDPA  234 (264)
T ss_dssp             HH-H-----HHHH-HTHHHHHHSSCHHHH--------HHHHHHHHH--HHHSSHHHHHHTTSSSEECCGG
T ss_pred             HH-H-----HHHH-HHhhhhhhhhhhhhh--------hHHHHHHHH--HHhcCHHHHHHcCCCCeeECHH
Confidence            33 1     1111 011222211110000        001111111  2234688899999999999874

>d1pixa3 c.14.1.4 (A:288-586) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Glutaconyl-CoA decarboxylase A subunit
species: Acidaminococcus fermentans [TaxId: 905]

Probab=97.55  E-value=0.00014  Score=58.33  Aligned_cols=133  Identities=12%  Similarity=0.087  Sum_probs=79.5

Q ss_pred             CCCeEEEEcCCCCCCC-CCCCCCCHHHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeeccc
Q 031001            9 SKPIYLYINSSGTQNE-KKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPV   87 (167)
Q Consensus         9 ~~~I~l~INS~G~~~~-~~~~~G~v~~g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~   87 (167)
                      +-||...+|+||...+ ..|--|.+..+-.+..++...+.|..|+++|.+++.|.+.+++..     ..|...|.+.+|.
T Consensus       118 ~iPlv~l~D~pGf~~g~~~E~~g~~r~ga~~~~a~~~~~VP~isvi~r~~~G~a~~am~g~~-----~~~~~~~~~awP~  192 (299)
T d1pixa3         118 RLPIVWIQDTTGIDVGNDAEKAELLGLGQSLIYSIQTSHIPQFEITLRKGTAAAHYVLGGPQ-----GNDTNAFSIGTAA  192 (299)
T ss_dssp             TCCEEEEECCCEECCSHHHHHTTHHHHHHHHHHHHHTCCCCEEEEECSEEETTHHHHTTCTT-----CTTTEEEEEECTT
T ss_pred             CCeEEEEEeCCCcccchHHHhhhHHHHHHHHHHHHHhhcceeEEEEecccccccccccccCc-----cCcccceecCCCc
Confidence            4599999999995533 335558999999999999999999999999999998877554321     2233334444443


Q ss_pred             c-cCCcCChhHHH-HHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhCC-----CccccHHHHHHcCcceEEeCCc
Q 031001           88 V-GRSSGPVTDMW-RKAKDLEANAESYIELLAKGTGKPKEEIAKDIQR-----PKYMQAKEAIVYGLADKIIDSQ  155 (167)
Q Consensus        88 ~-~~~~G~~~dl~-~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~-----~~~lsa~EA~e~GliD~I~~~~  155 (167)
                      . ....|...-.. .+.+++.+.         +.-+...++..+.+++     ..-.++-.|.+.|.||+||++.
T Consensus       193 aeigvMg~E~aa~vl~~~el~~~---------~~~~~~~~e~~e~~~~~~~~~~~~~sp~~aAs~~~iD~IIDP~  258 (299)
T d1pixa3         193 TEIAVMNGETAATAMYSRRLAKD---------RKAGKDLQPTIDKMNNLIQAFYTKSRPKVCAELGLVDEIVDMN  258 (299)
T ss_dssp             CEEESSCHHHHHHHHHHHHHHHH---------HHTTCCCHHHHHHHHHHHHHHHHTTSHHHHHHHTSSSEECCTT
T ss_pred             cccccccchhhheeehhhhhhhh---------hhhhhhhhHHHHHHHHHHHHHHHhcCHHHHHHhCCcCeeECHH
Confidence            1 01222211111 112222221         1122222222111110     1125888999999999999875

>d1xnya2 c.14.1.4 (A:268-530) Propionyl-CoA carboxylase complex B subunit, PccB {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Streptomyces coelicolor [TaxId: 1902]

Probab=97.16  E-value=9.4e-05  Score=58.35  Aligned_cols=79  Identities=15%  Similarity=0.137  Sum_probs=60.8

Q ss_pred             CCCeEEEEcCCCCCCC-CCCCCCCHHHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhcC--CCCceeeecCCceeeec
Q 031001            9 SKPIYLYINSSGTQNE-KKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVG--AKGYRGLQPNSSTKLYL   85 (167)
Q Consensus         9 ~~~I~l~INS~G~~~~-~~~~~G~v~~g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag--~~~~R~~~p~s~~miH~   85 (167)
                      +-||...+|+||.-.+ ..|--|.+..+-.+..++...+.|..|++.|.+.+.|.+.+++.  ..+..++.|++.+.+-.
T Consensus       100 ~iPli~l~d~pGf~~G~~~E~~g~~~~ga~~~~a~a~~~vPkitvi~~~~~Gga~~~m~~~~~~~d~~~awP~a~~gvm~  179 (263)
T d1xnya2         100 NVPVLTFVDVPGFLPGVDQEHDGIIRRGAKLIFAYAEATVPLITVITRKAFGGAYDVMGSKHLGADLNLAWPTAQIAVMG  179 (263)
T ss_dssp             TCCEEEEEEECCBCCCHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEESSC
T ss_pred             CCceEEeecccccccchhHHHHhHHHHHHHHHHHHHccCCCeEEEEecCccccceeccCCcccCCcEEEEcchhhhhccC
Confidence            4589999999996544 34555888899999999999999999999999999777664432  23567777888776654


Q ss_pred             cc
Q 031001           86 PV   87 (167)
Q Consensus        86 p~   87 (167)
                      |.
T Consensus       180 pe  181 (263)
T d1xnya2         180 AQ  181 (263)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>d2a7sa2 c.14.1.4 (A:278-548) Propionyl-CoA carboxylase complex B subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.02  E-value=6.7e-05  Score=59.42  Aligned_cols=78  Identities=17%  Similarity=0.122  Sum_probs=59.0

Q ss_pred             CCCeEEEEcCCCCCCC-CCCCCCCHHHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhcC--CCCceeeecCCceeeec
Q 031001            9 SKPIYLYINSSGTQNE-KKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVG--AKGYRGLQPNSSTKLYL   85 (167)
Q Consensus         9 ~~~I~l~INS~G~~~~-~~~~~G~v~~g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag--~~~~R~~~p~s~~miH~   85 (167)
                      +-||....|+||.-.+ ..|--|.+..+-.++.++...+.|..|++.|.+.+.|.+.+++.  ..+..++.|++.+.+-.
T Consensus       105 ~iPlv~l~dtpGf~~G~~~E~~g~~~~ga~~~~a~a~~~vP~isvi~~~~~G~~~~am~~~~~~~d~~~AwP~A~igvMg  184 (271)
T d2a7sa2         105 NIPIVMLVDVPGFLPGTDQEYNGIIRRGAKLLYAYGEATVPKITVITRKAYGGAYCVMGSKDMGCDVNLAWPTAQIAVMG  184 (271)
T ss_dssp             TCCEEEEEEECCBCCCHHHHHHCHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEESSC
T ss_pred             CCceEEeechhhhhhhccHHHhhHHHHHHHHHHHHHhCCCCeEEEEeCCccchhhhhhcccccccceEEEecceeEeecC
Confidence            4699999999996543 44555788999999999999999999999999999877665542  12455666777665543


Q ss_pred             c
Q 031001           86 P   86 (167)
Q Consensus        86 p   86 (167)
                      |
T Consensus       185 p  185 (271)
T d2a7sa2         185 A  185 (271)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1uyra2 c.14.1.4 (A:1815-2218) Acetyl-coenzyme A carboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.27  E-value=0.0042  Score=51.31  Aligned_cols=78  Identities=14%  Similarity=0.061  Sum_probs=53.9

Q ss_pred             CCCeEEEEcCCCCCCC-CCCCCCCHHHHHHHHHHHhhcCCCeEEEEc--cccccHHHHHHhcCCCC----ceeeecCCce
Q 031001            9 SKPIYLYINSSGTQNE-KKESVGAETDAYAIADAMAYCKSKVYTVNC--GMAYGQAAMLLSVGAKG----YRGLQPNSST   81 (167)
Q Consensus         9 ~~~I~l~INS~G~~~~-~~~~~G~v~~g~aI~~~i~~~~~~V~t~~~--G~aaS~a~~i~~ag~~~----~R~~~p~s~~   81 (167)
                      +-||.+..|.||...+ .-|--|-+..|-.|.+++..++.|+.+++.  |.+.+ |+++.+.++..    ..|+-|+|.+
T Consensus       130 ~lPLi~l~D~pGF~~G~~~E~~gilr~GA~iv~A~~~~~vP~i~vI~~~g~~~G-Ga~vv~~~~~~~~~~~~yAwP~a~~  208 (404)
T d1uyra2         130 QLPMMILANWRGFSGGQRDMFNEVLKYGSFIVDALVDYKQPIIIYIPPTGELRG-GSWVVVDPTINADQMEMYADVNARA  208 (404)
T ss_dssp             CCCEEECCCCCCBCC------CTHHHHHHHHHHHHHTCCSCEEEEECTTCEEEH-HHHHTTCGGGGTTTEEEEEETTCEE
T ss_pred             ccceEEeecCCcccCcHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEeCCcccch-hhhhcccCccCCccceEEECCcccc
Confidence            4699999999997755 455568999999999999999999999995  55555 55555543221    1255677776


Q ss_pred             eeeccc
Q 031001           82 KLYLPV   87 (167)
Q Consensus        82 miH~p~   87 (167)
                      .+-.|.
T Consensus       209 gVm~pE  214 (404)
T d1uyra2         209 GVLEPQ  214 (404)
T ss_dssp             ESSCHH
T ss_pred             ccCChh
Confidence            665554

>d1pixa2 c.14.1.4 (A:1-287) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Glutaconyl-CoA decarboxylase A subunit
species: Acidaminococcus fermentans [TaxId: 905]

Probab=91.33  E-value=0.17  Score=39.34  Aligned_cols=78  Identities=8%  Similarity=-0.029  Sum_probs=46.9

Q ss_pred             CCCeEEEEcCCCCCCC-CCCCCCCHHH-HHHHHH--HHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeee
Q 031001            9 SKPIYLYINSSGTQNE-KKESVGAETD-AYAIAD--AMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLY   84 (167)
Q Consensus         9 ~~~I~l~INS~G~~~~-~~~~~G~v~~-g~aI~~--~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH   84 (167)
                      .-|+...++|+|.--. ..+.+++... |..+++  .+.....|+.+++.|-|.+.|++..+++  .-..+.+++.+.+-
T Consensus       139 ~lP~I~l~ds~Ga~~~~~~e~~~~~~~~g~~~~~~a~ls~~~VP~Isvv~G~~~gGgAy~~~~~--~~i~~~~~a~i~~~  216 (287)
T d1pixa2         139 HVPLVYVLNCSGVKFDEQEKVYPNRRGGGTPFFRNAELNQLGIPVIVGIYGTNPAGGGYHSISP--TVIIAHEKANMAVG  216 (287)
T ss_dssp             TCCEEEEECCCEECGGGHHHHSSSTTSTTHHHHHHHHHHHTTCCEEEEECSEEETHHHHHHHSS--SEEEEETTCEEESC
T ss_pred             CCCEEEEecCCcccCCcchhhccchhhHHHHHHHHHHHhhcCCCeEEEecCCccccceeccccc--eeEEecCCeEEEEE
Confidence            3589999999992110 0011111111 122333  3444568999999999998898876655  33445577877776


Q ss_pred             cccc
Q 031001           85 LPVV   88 (167)
Q Consensus        85 ~p~~   88 (167)
                      -|.+
T Consensus       217 Gp~v  220 (287)
T d1pixa2         217 GAGI  220 (287)
T ss_dssp             CCTT
T ss_pred             CHHH
Confidence            6653

>d2f9yb1 c.14.1.4 (B:23-285) Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, AccD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, AccD
species: Escherichia coli [TaxId: 562]

Probab=89.32  E-value=0.25  Score=37.78  Aligned_cols=77  Identities=13%  Similarity=0.084  Sum_probs=43.6

Q ss_pred             CCCeEEEEcCCCCCCCCCC-CCCCHHHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecc
Q 031001            9 SKPIYLYINSSGTQNEKKE-SVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLP   86 (167)
Q Consensus         9 ~~~I~l~INS~G~~~~~~~-~~G~v~~g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p   86 (167)
                      .-|+..+..|+|.--..+. .+............++....|+.+++.|-+++.++..++.++ +-..+.|+|.+.+--|
T Consensus       131 ~lPlI~~~~sgG~r~~e~~~sl~~~~~~~~~~~~~~~~~vP~I~v~~g~~~GG~aa~~~~~~-d~i~~~~~s~i~~aGP  208 (263)
T d2f9yb1         131 NCPLICFSASGGARMQEALMSLMQMAKTSAALAKMQERGLPYISVLTDPTMGGVSASFAMLG-DLNIAEPKALIGFAGP  208 (263)
T ss_dssp             TCCEEEEEEESSBCGGGTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEEHHHHTTGGGCC-SEEEECTTCBEESSCH
T ss_pred             CCCeEEEecCCCcccccccchhhcchhHHHHHHHHHhCCCceEEEecCCcchHHHhhhhhcC-ceEeeecceeeeccCH
Confidence            3588888888882211100 001111112233344566689999999999987665444443 4566667777666433

>d1on3a1 c.14.1.4 (A:8-260) Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) {Propionibacterium freudenreichii [TaxId: 1744]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S)
species: Propionibacterium freudenreichii [TaxId: 1744]

Probab=83.11  E-value=0.71  Score=34.98  Aligned_cols=65  Identities=9%  Similarity=0.159  Sum_probs=43.9

Q ss_pred             CCCeEEEEcCCCCCCCCCCCCCCHHHHHH-------H-HHHHhhc-CCCeEEEEccccccHHHHHHhcCCCCceeeecCC
Q 031001            9 SKPIYLYINSSGTQNEKKESVGAETDAYA-------I-ADAMAYC-KSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNS   79 (167)
Q Consensus         9 ~~~I~l~INS~G~~~~~~~~~G~v~~g~a-------I-~~~i~~~-~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s   79 (167)
                      .-|+..+++|.|         +.+.++..       + +...+.. ..|+.+++.|-|++.+++.++.++  ..++.+.|
T Consensus       124 ~lPlV~l~~sgG---------~r~~eg~~~l~~~~~~~~~~~~ls~~vP~i~vv~Gp~~GG~a~~~~~~d--~vi~~~~a  192 (253)
T d1on3a1         124 GTPFLFFYDSGG---------ARIQEGIDSLSGYGKMFFANVKLSGVVPQIAIIAGPCAGGASYSPALTD--FIIMTKKA  192 (253)
T ss_dssp             TCCEEEEEEECS---------BCGGGTHHHHHHHHHHHHHHHHHTTTSCEEEEEEEEEESGGGHHHHHSS--EEEEETTC
T ss_pred             CCCeEEEEecCC---------CcccccceeccccceehHHHHHHhccceEEEEEecCcccceeeccchhh--heeccccc
Confidence            358999999999         55543321       1 2222222 379999999999988888887774  56666777


Q ss_pred             ceeee
Q 031001           80 STKLY   84 (167)
Q Consensus        80 ~~miH   84 (167)
                      .+.+-
T Consensus       193 ~i~~a  197 (253)
T d1on3a1         193 HMFIT  197 (253)
T ss_dssp             EEESS
T ss_pred             eEEec
Confidence            66553