Citrus Sinensis ID: 031030

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------
Protein Sequence
MEKIDFMKNGVLRLPPGFRFHPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLPGDVAQERYFFSTREAKYPNGNRSNRATGSGYWKATGLDKQIATSRGNQIVGMKKTLVFYRGKPPHGSRTDWIMHEYRLVTAANAPQKKNLPRPQLWQRTIGFYAASF
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccHHHHHHHHHHHHcccccccccEEEEEccccccccccccccccEEccccccccccccccccccccccccccccccccEEccccccEEEEEEEEEEcccccccccccccEEEEEEEcccccccccccccccccEEEEEEEEEccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccHHHHHHHHHHHHHccccccccEEEEEEcccccccccccHcccEEEEEccccccccccccccHHcccccEEEcccccccEccccccEEEEEEEEEEEcccccccccccEEEEEEEEcccccccccccEEEEEEEEcccccccccc
Coil and Loop (DISEMBL)
mekidfmkngvlrlppgfrfhptdEELVVQYLKRKIfacplpasiipevdvcksdpwdlpgdvaqeRYFFStreakypngnrsnratgsgywkatgldkqiatsrgnqivGMKKTLVfyrgkpphgsrtdwIMHEYRLVtaanapqkknlprpqlwqRTIGFYAASF
Flexible Loop (DISEMBL)
mekidfmkngvlrlppgfrfhpTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLPGDVAQERYFFStreakypngnrsnratgsgywkATGLDKQIatsrgnqivGMKKTLVFYRGKPPHGSRTDWIMHEYRLVTAanapqkknlprpqlwqrTIGFYAASF
Low Complexity Region (SEG)
MEKIDFMKNGVLRLPPGFRFHPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLPGDVAQERYFFSTREAKYPNGNRSNRATGSGYWKATGLDKQIATSRGNQIVGMKKTLVFYRGKPPHGSRTDWIMHEYRLVTAANAPQKKNLPRPQLWQRTIGFYAASF
Disordered region (IsUnstruct)
*****FMKNGVLRLPPGFRFHPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLPGDVAQERYFFSTR***************SGYWKATGLDKQIATSRGNQIVGMKKTLVFYRGKPPHGSRTDWIMHEYRLVTAANA********PQLWQRTIGFYA***
Disordered Region (DISOPRED)
***************PGFRFHPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLPGDVAQERYFFSTREAKYPNGNRSNRATGSGYWKATGLDKQIATSRGNQIVGMKKTLVFYRGKPPHGSRTDWIMHEYRLV***************LWQRTIGFYAAS*
Disordered Region (DISEMBL)
MEKIDFMKNGVLRLPPGFRFHPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLPGDVAQERYFFSTREAKYPNGNRSNRATGSGYWKATGLDKQIATSRGNQIVGMKKTLVFYRGKPPHGSRTDWIMHEYRLVTAANAPQKKNLPRPQLWQRTIGFYAASF
Disordered Region (DISPRO)
************RLPPGFRFHPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLPGDVAQERYFFSTREAKYPNGNRSNRATGSGYWKATGLDKQIATSRGNQIVGMKKTLVFYRGKPPHGSRTDWIMHEYRLVTAANAPQKKNLPRPQLWQRTI*******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEKIDFMKNGVLRLPPGFRFHPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLPGDVAQERYFFSTREAKYPNGNRSNRATGSGYWKATGLDKQIATSRGNQIVGMKKTLVFYRGKPPHGSRTDWIMHEYRLVTAANAPQKKNLPRPQLWQRTIGFYAASF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	167	2.2.26 [Sep-21-2011]
Q8H4S4	425	NAC transcription factor	yes	no	0.844	0.331	0.616	2e-43
D2SMN4	406	NAC transcription factor	N/A	no	0.844	0.347	0.605	3e-43
A0SPJ6	396	NAC transcription factor	N/A	no	0.790	0.333	0.639	3e-43
Q52QH4	318	NAC domain-containing pro	no	no	0.820	0.430	0.621	4e-43
A2YMR0	425	NAC transcription factor	N/A	no	0.790	0.310	0.625	1e-42
A0SPJ9	402	NAC transcription factor	N/A	no	0.790	0.328	0.632	1e-42
A0SPJ4	405	NAC transcription factor	N/A	no	0.844	0.348	0.604	1e-42
O49255	268	NAC transcription factor	no	no	0.802	0.5	0.611	2e-42
A0SPJ8	406	NAC transcription factor	N/A	no	0.844	0.347	0.598	2e-42
Q8GY42	323	NAC transcription factor	no	no	0.856	0.442	0.589	5e-42

>sp|Q8H4S4|NAC10_ORYSJ NAC transcription factor ONAC010 OS=Oryza sativa subsp. japonica GN=ONAC010 PE=2 SV=1

 Score =  174 bits (441), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 90/146 (61%), Positives = 103/146 (70%), Gaps = 5/146 (3%)

Query: 13  RLPPGFRFHPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLPGDV---AQERYF 69
            LPPGFRFHPTDEELVV YLK+K  + PLP +II EVD+ K DPWDLP       QE YF
Sbjct: 28  ELPPGFRFHPTDEELVVHYLKKKAASVPLPVTIIAEVDLYKFDPWDLPEKANFGEQEWYF 87

Query: 70  FSTREAKYPNGNRSNRATGSGYWKATGLDKQIATSRGN-QIVGMKKTLVFYRGKPPHGSR 128
           FS R+ KYPNG R NRA  SGYWKATG DK I +S    + VG+KK LVFYRGKPP G +
Sbjct: 88  FSPRDRKYPNGARPNRAATSGYWKATGTDKPIMSSGSTREKVGVKKALVFYRGKPPKGVK 147

Query: 129 TDWIMHEYRLV-TAANAPQKKNLPRP 153
           T+WIMHEYRL  T+++A       RP
Sbjct: 148 TNWIMHEYRLTDTSSSAAAVATTRRP 173

Transcription factor of the NAC family associated with male fertility. Involved in anther development, but not in senescence. Reduced expression of NAC5 via RNAi leads to male-sterility.
Oryza sativa subsp. japonica (taxid: 39947)

>sp|D2SMN4|NAMB1_HORVS NAC transcription factor NAM-B1 OS=Hordeum vulgare subsp. spontaneum GN=NAM-B1 PE=4 SV=1

 Score =  174 bits (441), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 89/147 (60%), Positives = 100/147 (68%), Gaps = 6/147 (4%)

Query: 13  RLPPGFRFHPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLPGDVA---QERYF 69
            LPPGFRFHPTDEELVV YLK+K    PLP +II EVD+ K DPW+LP        E YF
Sbjct: 34  ELPPGFRFHPTDEELVVHYLKKKAAKAPLPVTIIAEVDLYKFDPWELPEKATFGEHEWYF 93

Query: 70  FSTREAKYPNGNRSNRATGSGYWKATGLDKQI---ATSRGNQIVGMKKTLVFYRGKPPHG 126
           FS R+ KYPNG R NRA  SGYWKATG DK I   AT  G + VG+KK LVFYRGKPP G
Sbjct: 94  FSPRDRKYPNGARPNRAATSGYWKATGTDKPILASATGCGREKVGVKKALVFYRGKPPRG 153

Query: 127 SRTDWIMHEYRLVTAANAPQKKNLPRP 153
            +T+WIMHEYRL  A+      + P P
Sbjct: 154 LKTNWIMHEYRLTGASAGSTTTSRPPP 180

Transcription factor of the NAC family associated with the grain protein content (GPC). Sequences of the 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype.

Hordeum vulgare subsp. spontaneum (taxid: 77009)

>sp|A0SPJ6|NAMB2_TRIDB NAC transcription factor NAM-B2 OS=Triticum durum GN=NAM-B2 PE=2 SV=1

 Score =  174 bits (440), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 87/136 (63%), Positives = 100/136 (73%), Gaps = 4/136 (2%)

Query: 13  RLPPGFRFHPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLPGDVA---QERYF 69
            LPPGFRFHPTDEELVV YLK+K    PLP +II EVD+ K DPW+LP       QE YF
Sbjct: 27  ELPPGFRFHPTDEELVVHYLKKKAAKVPLPVTIITEVDLYKFDPWELPEKATFGEQEWYF 86

Query: 70  FSTREAKYPNGNRSNRATGSGYWKATGLDKQI-ATSRGNQIVGMKKTLVFYRGKPPHGSR 128
           FS R+ KYPNG R NRA  SGYWKATG DK I A+  G + VG+KK LVFYRGKPP G +
Sbjct: 87  FSPRDRKYPNGARPNRAATSGYWKATGTDKPILASGCGREKVGVKKALVFYRGKPPKGLK 146

Query: 129 TDWIMHEYRLVTAANA 144
           T+WIMHEYRL  A+++
Sbjct: 147 TNWIMHEYRLTDASSS 162

Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. The tetraploid cultivated wheat (T.durum) contains one additional gene encoding for a functional protein (NAM-A1) and one extra pseudogene (NAM-B1) (PubMed:17124321). Plays a weaker role in terminal senescence than NAM-A1.

Triticum durum (taxid: 4567)

>sp|Q52QH4|NAC68_ORYSJ NAC domain-containing protein 68 OS=Oryza sativa subsp. japonica GN=NAC68 PE=2 SV=1

 Score =  173 bits (439), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 87/140 (62%), Positives = 97/140 (69%), Gaps = 3/140 (2%)

Query: 12  LRLPPGFRFHPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLPGDVA---QERY 68
           L LPPGFRFHPTDEELVV YL RK+   PLP  II EVD+ K DPWDLP       +E Y
Sbjct: 19  LNLPPGFRFHPTDEELVVHYLCRKVARQPLPVPIIAEVDLYKLDPWDLPEKALFGRKEWY 78

Query: 69  FFSTREAKYPNGNRSNRATGSGYWKATGLDKQIATSRGNQIVGMKKTLVFYRGKPPHGSR 128
           FF+ R+ KYPNG+R NRA G GYWKATG DK +A     + VG+KK LVFY GK P G +
Sbjct: 79  FFTPRDRKYPNGSRPNRAAGRGYWKATGADKPVAPKGSARTVGIKKALVFYSGKAPRGVK 138

Query: 129 TDWIMHEYRLVTAANAPQKK 148
           TDWIMHEYRL  A  AP  K
Sbjct: 139 TDWIMHEYRLADADRAPGGK 158

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2YMR0|NAC10_ORYSI NAC transcription factor ONAC010 OS=Oryza sativa subsp. indica GN=ONAC010 PE=3 SV=1

 Score =  172 bits (436), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 85/136 (62%), Positives = 99/136 (72%), Gaps = 4/136 (2%)

Query: 13  RLPPGFRFHPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLPGDV---AQERYF 69
            LPPGFRFHPTDEELVV YLK+K  + PLP +II EVD+ K DPW+LP       QE YF
Sbjct: 28  ELPPGFRFHPTDEELVVHYLKKKAASVPLPVTIIAEVDLYKFDPWELPEKANFGEQEWYF 87

Query: 70  FSTREAKYPNGNRSNRATGSGYWKATGLDKQI-ATSRGNQIVGMKKTLVFYRGKPPHGSR 128
           FS R+ KYPNG R NRA  SGYWKATG DK I A+    + VG+KK LVFYRGKPP G +
Sbjct: 88  FSPRDRKYPNGARPNRAATSGYWKATGTDKPIMASGSTREKVGVKKALVFYRGKPPKGVK 147

Query: 129 TDWIMHEYRLVTAANA 144
           T+WIMHEYRL   +++
Sbjct: 148 TNWIMHEYRLTDTSSS 163

Transcription factor of the NAC family associated with male fertility.

Oryza sativa subsp. indica (taxid: 39946)

>sp|A0SPJ9|NAM2_HORVD NAC transcription factor NAM-2 OS=Hordeum vulgare var. distichum GN=NAM-2 PE=4 SV=1

 Score =  172 bits (436), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 86/136 (63%), Positives = 99/136 (72%), Gaps = 4/136 (2%)

Query: 13  RLPPGFRFHPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLPGDVA---QERYF 69
            LPPGFRFHPTDEELVV YLK+K    PLP +II EVD+ K DPW+LP       QE YF
Sbjct: 27  ELPPGFRFHPTDEELVVHYLKKKAAKVPLPVTIIAEVDLYKFDPWELPEKATFGEQEWYF 86

Query: 70  FSTREAKYPNGNRSNRATGSGYWKATGLDKQI-ATSRGNQIVGMKKTLVFYRGKPPHGSR 128
           FS R+ KYPNG R NRA  SGYWKATG DK I A+  G + VG+K  LVFYRGKPP G +
Sbjct: 87  FSPRDRKYPNGARPNRAATSGYWKATGTDKPILASGCGREKVGVKXALVFYRGKPPKGLK 146

Query: 129 TDWIMHEYRLVTAANA 144
           T+WIMHEYRL  A+++
Sbjct: 147 TNWIMHEYRLTDASSS 162

Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. Sequences of 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype.

Hordeum vulgare var. distichum (taxid: 112509)

>sp|A0SPJ4|NAMB1_TRIDC NAC transcription factor NAM-B1 OS=Triticum dicoccoides GN=NAM-B1 PE=4 SV=1

 Score =  172 bits (435), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 90/149 (60%), Positives = 102/149 (68%), Gaps = 8/149 (5%)

Query: 13  RLPPGFRFHPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLPGDVA---QERYF 69
            LPPGFRFHPTDEELVV YLK+K    PLP +II EVD+ K DPW+LP       QE YF
Sbjct: 33  ELPPGFRFHPTDEELVVHYLKKKADKAPLPVNIIAEVDLYKFDPWELPEKATIGEQEWYF 92

Query: 70  FSTREAKYPNGNRSNRATGSGYWKATGLDKQI-ATSRGNQIV----GMKKTLVFYRGKPP 124
           FS R+ KYPNG R NRA  SGYWKATG DK I A+  G  +V    G+KK LVFYRGKPP
Sbjct: 93  FSPRDRKYPNGARPNRAATSGYWKATGTDKPILASGTGCGLVREKLGVKKALVFYRGKPP 152

Query: 125 HGSRTDWIMHEYRLVTAANAPQKKNLPRP 153
            G +T+WIMHEYRL  A+ +    N P P
Sbjct: 153 KGLKTNWIMHEYRLTDASGSTTATNRPPP 181

Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. The tetraploid cultivated wheat (T.durum) and the hexaploid wheat (T.aestivum) carry a one bp insertion generating a non-functional allele of this gene. They have a delayed senescence and a lower grain protein, zinc and iron content (PubMed:17124321).

Triticum dicoccoides (taxid: 85692)

>sp|O49255|NAC29_ARATH NAC transcription factor 29 OS=Arabidopsis thaliana GN=NAC029 PE=2 SV=1

 Score =  171 bits (434), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 85/139 (61%), Positives = 97/139 (69%), Gaps = 5/139 (3%)

Query: 14  LPPGFRFHPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLPGDV---AQERYFF 70
           LPPGFRFHPTDEEL+V YL+ +  + P P SIIPEVD+ K DPW LP        E YFF
Sbjct: 9   LPPGFRFHPTDEELIVYYLRNQTMSKPCPVSIIPEVDIYKFDPWQLPEKTEFGENEWYFF 68

Query: 71  STREAKYPNGNRSNRATGSGYWKATGLDKQIATSRGNQIVGMKKTLVFYRGKPPHGSRTD 130
           S RE KYPNG R NRA  SGYWKATG DK I +   N  VG+KK LVFY+G+PP G +TD
Sbjct: 69  SPRERKYPNGVRPNRAAVSGYWKATGTDKAIHSGSSN--VGVKKALVFYKGRPPKGIKTD 126

Query: 131 WIMHEYRLVTAANAPQKKN 149
           WIMHEYRL  +  A  K+N
Sbjct: 127 WIMHEYRLHDSRKASTKRN 145

May function in the transition between active cell division and cell expansion.

Arabidopsis thaliana (taxid: 3702)

>sp|A0SPJ8|NAM1_HORVD NAC transcription factor NAM-1 OS=Hordeum vulgare var. distichum GN=NAM-1 PE=4 SV=1

 Score =  171 bits (433), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 88/147 (59%), Positives = 99/147 (67%), Gaps = 6/147 (4%)

Query: 13  RLPPGFRFHPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLPGDVA---QERYF 69
            LPPGFRFHPTDEELVV YLK+K    PLP +II EVD+ K DPW+LP        E YF
Sbjct: 34  ELPPGFRFHPTDEELVVHYLKKKAAKAPLPVTIIAEVDLYKFDPWELPEKATFGEHEWYF 93

Query: 70  FSTREAKYPNGNRSNRATGSGYWKATGLDKQI---ATSRGNQIVGMKKTLVFYRGKPPHG 126
           FS R+ KY NG R NRA  SGYWKATG DK I   AT  G + VG+KK LVFYRGKPP G
Sbjct: 94  FSPRDRKYANGARPNRAATSGYWKATGTDKPILASATGCGREKVGVKKALVFYRGKPPRG 153

Query: 127 SRTDWIMHEYRLVTAANAPQKKNLPRP 153
            +T+WIMHEYRL  A+      + P P
Sbjct: 154 LKTNWIMHEYRLTGASAGSTTTSRPPP 180

Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. Sequences of 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype.

Hordeum vulgare var. distichum (taxid: 112509)

>sp|Q8GY42|NAC25_ARATH NAC transcription factor 25 OS=Arabidopsis thaliana GN=NAC025 PE=2 SV=1

 Score =  169 bits (429), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 92/156 (58%), Positives = 104/156 (66%), Gaps = 13/156 (8%)

Query: 13  RLPPGFRFHPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLPGDVA---QERYF 69
            LPPGFRFHPTDEELVV YLK+K  + PLP SII E+D+ K DPW+LP   +    E YF
Sbjct: 15  HLPPGFRFHPTDEELVVHYLKKKADSVPLPVSIIAEIDLYKFDPWELPSKASFGEHEWYF 74

Query: 70  FSTREAKYPNGNRSNRATGSGYWKATGLDKQIATSRGNQIVGMKKTLVFYRGKPPHGSRT 129
           FS R+ KYPNG R NRA  SGYWKATG DK I T   ++ VG+KK LVFY GKPP G +T
Sbjct: 75  FSPRDRKYPNGVRPNRAATSGYWKATGTDKPIFTCNSHK-VGVKKALVFYGGKPPKGIKT 133

Query: 130 DWIMHEYRLV-----TAANAPQ----KKNLPRPQLW 156
           DWIMHEYRL      TAA  P     +KN  R   W
Sbjct: 134 DWIMHEYRLTDGNLSTAAKPPDLTTTRKNSLRLDDW 169

Transcription factor of the NAC family. May be associated with anther development and pollen production.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	167
337733646	249	NAC domain transcription factor [Citrus	0.898	0.602	0.993	7e-85
255543138	254	NAC domain-containing protein, putative	0.892	0.586	0.856	1e-75
224053533	257	NAC domain protein, IPR003441 [Populus t	0.892	0.579	0.856	1e-74
225425172	251	PREDICTED: NAC domain-containing protein	0.892	0.593	0.859	2e-74
224075517	255	NAC domain protein, IPR003441 [Populus t	0.892	0.584	0.849	5e-74
351724343	229	NAC domain protein [Glycine max] gi|1879	0.868	0.633	0.869	5e-73
302399017	255	NAC domain class transcription factor [M	0.892	0.584	0.830	2e-72
255629857	229	unknown [Glycine max]	0.868	0.633	0.856	3e-72
449445576	257	PREDICTED: NAC transcription factor ONAC	0.892	0.579	0.816	6e-72
443682294	255	NAC protein 7 [Gossypium hirsutum]	0.928	0.607	0.808	1e-71

>gi|337733646|gb|AEI72272.1| NAC domain transcription factor [Citrus trifoliata]

 Score =  318 bits (814), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 149/150 (99%), Positives = 149/150 (99%)

Query: 1   MEKIDFMKNGVLRLPPGFRFHPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLP 60
           MEKIDFMKNGVLRLPPGFRFHPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLP
Sbjct: 1   MEKIDFMKNGVLRLPPGFRFHPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLP 60

Query: 61  GDVAQERYFFSTREAKYPNGNRSNRATGSGYWKATGLDKQIATSRGNQIVGMKKTLVFYR 120
           GDVAQERYFFSTREAKYPNGNRSNRATGSGYWKATGLDKQIATSRGNQIVGMKKTLVFYR
Sbjct: 61  GDVAQERYFFSTREAKYPNGNRSNRATGSGYWKATGLDKQIATSRGNQIVGMKKTLVFYR 120

Query: 121 GKPPHGSRTDWIMHEYRLVTAANAPQKKNL 150
           GKPPHGSRTDWIMHEYRLVTAANAPQKKN 
Sbjct: 121 GKPPHGSRTDWIMHEYRLVTAANAPQKKNF 150

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255543138|ref|XP_002512632.1| NAC domain-containing protein, putative [Ricinus communis] gi|223548593|gb|EEF50084.1| NAC domain-containing protein, putative [Ricinus communis]

 Score =  287 bits (735), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 131/153 (85%), Positives = 145/153 (94%), Gaps = 4/153 (2%)

Query: 1   MEKIDFMKNGVLRLPPGFRFHPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLP 60
           ME+++F+KNGVLRLPPGFRFHPTDEELVVQYLKRK+F+CPLPASIIPEVDVCKSDPWDLP
Sbjct: 1   MERLNFVKNGVLRLPPGFRFHPTDEELVVQYLKRKVFSCPLPASIIPEVDVCKSDPWDLP 60

Query: 61  GDVAQERYFFSTREAKYPNGNRSNRATGSGYWKATGLDKQIATSRGNQIVGMKKTLVFYR 120
           GD+ QERYFFSTREAKYPNGNRSNRAT SGYWKATG+DK+I TS+GNQ+VGMKKTLVFYR
Sbjct: 61  GDLEQERYFFSTREAKYPNGNRSNRATSSGYWKATGIDKEIVTSKGNQLVGMKKTLVFYR 120

Query: 121 GKPPHGSRTDWIMHEYRLVT----AANAPQKKN 149
           GKPPHG+RTDWIMHEYRLV+    A N+PQKKN
Sbjct: 121 GKPPHGTRTDWIMHEYRLVSPQTAACNSPQKKN 153

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224053533|ref|XP_002297860.1| NAC domain protein, IPR003441 [Populus trichocarpa] gi|222845118|gb|EEE82665.1| NAC domain protein, IPR003441 [Populus trichocarpa]

 Score =  283 bits (725), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 131/153 (85%), Positives = 141/153 (92%), Gaps = 4/153 (2%)

Query: 1   MEKIDFMKNGVLRLPPGFRFHPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLP 60
           MEK+ F+KNGVLRLPPGFRFHPTDEELVVQYLKRK+FACPLPASIIPEVDVCKSDPWDLP
Sbjct: 1   MEKLSFVKNGVLRLPPGFRFHPTDEELVVQYLKRKVFACPLPASIIPEVDVCKSDPWDLP 60

Query: 61  GDVAQERYFFSTREAKYPNGNRSNRATGSGYWKATGLDKQIATSRGNQIVGMKKTLVFYR 120
           GD+ QERYFFSTREAKYPNGNRSNRATGSGYWKATG+DKQI TS+G+Q+VGMKKTLVFYR
Sbjct: 61  GDLEQERYFFSTREAKYPNGNRSNRATGSGYWKATGIDKQIVTSKGHQVVGMKKTLVFYR 120

Query: 121 GKPPHGSRTDWIMHEYRL----VTAANAPQKKN 149
           GKPPHG+RTDWIMHEYRL     TA N  + KN
Sbjct: 121 GKPPHGTRTDWIMHEYRLASTETTACNTLKNKN 153

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225425172|ref|XP_002264588.1| PREDICTED: NAC domain-containing protein 29 isoform 1 [Vitis vinifera] gi|296088719|emb|CBI38169.3| unnamed protein product [Vitis vinifera]

 Score =  283 bits (724), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 128/149 (85%), Positives = 140/149 (93%)

Query: 1   MEKIDFMKNGVLRLPPGFRFHPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLP 60
           MEK++F+KNGVLRLPPGFRFHPTDEELVVQYLKRK ++CPLPASIIPEVDVCK+DPWDLP
Sbjct: 1   MEKLNFVKNGVLRLPPGFRFHPTDEELVVQYLKRKAYSCPLPASIIPEVDVCKADPWDLP 60

Query: 61  GDVAQERYFFSTREAKYPNGNRSNRATGSGYWKATGLDKQIATSRGNQIVGMKKTLVFYR 120
           GD+ QERYFFSTREAKYPNGNRSNRAT SGYWKATG+DKQI  S+GNQ+VGMKKTLVFYR
Sbjct: 61  GDLEQERYFFSTREAKYPNGNRSNRATVSGYWKATGIDKQIVASKGNQVVGMKKTLVFYR 120

Query: 121 GKPPHGSRTDWIMHEYRLVTAANAPQKKN 149
           GKPPHGSRTDWIMHEYRLV A   PQ+K+
Sbjct: 121 GKPPHGSRTDWIMHEYRLVGAETTPQRKS 149

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224075517|ref|XP_002304662.1| NAC domain protein, IPR003441 [Populus trichocarpa] gi|222842094|gb|EEE79641.1| NAC domain protein, IPR003441 [Populus trichocarpa]

 Score =  281 bits (720), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 130/153 (84%), Positives = 140/153 (91%), Gaps = 4/153 (2%)

Query: 1   MEKIDFMKNGVLRLPPGFRFHPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLP 60
           MEK++F+KNG +RLPPGFRFHPTDEELVVQYLKRK+FACPLPASIIPEVDVCKSDPWDLP
Sbjct: 1   MEKLNFVKNGAVRLPPGFRFHPTDEELVVQYLKRKVFACPLPASIIPEVDVCKSDPWDLP 60

Query: 61  GDVAQERYFFSTREAKYPNGNRSNRATGSGYWKATGLDKQIATSRGNQIVGMKKTLVFYR 120
           GD+ QERYFFSTREAKYPNGNRSNRATGSGYWKATG+DKQI TS+GNQ VGMKKTLVFYR
Sbjct: 61  GDLEQERYFFSTREAKYPNGNRSNRATGSGYWKATGIDKQIVTSKGNQAVGMKKTLVFYR 120

Query: 121 GKPPHGSRTDWIMHEYRLVT----AANAPQKKN 149
           GKPPHG+RTDWIMHEYRL +    A NA   KN
Sbjct: 121 GKPPHGTRTDWIMHEYRLASTETAACNALLNKN 153

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351724343|ref|NP_001238078.1| NAC domain protein [Glycine max] gi|187940283|gb|ACD39372.1| NAC domain protein [Glycine max]

 Score =  278 bits (711), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 127/146 (86%), Positives = 136/146 (93%), Gaps = 1/146 (0%)

Query: 1   MEKIDFMKNGVLRLPPGFRFHPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLP 60
           MEK+ F+KNG LRLPPGFRFHPTDEELV+QYLKRK+F+CPLPASIIPEVDVCKSDPWDLP
Sbjct: 1   MEKVSFVKNGELRLPPGFRFHPTDEELVLQYLKRKVFSCPLPASIIPEVDVCKSDPWDLP 60

Query: 61  GDVAQERYFFSTREAKYPNGNRSNRATGSGYWKATGLDKQIATSRGNQIVGMKKTLVFYR 120
           GD+ QERYFFST+EAKYPNGNRSNRAT SGYWKATGLDKQI TS+GNQ+VGMKKTLVFYR
Sbjct: 61  GDLEQERYFFSTKEAKYPNGNRSNRATNSGYWKATGLDKQIVTSKGNQVVGMKKTLVFYR 120

Query: 121 GKPPHGSRTDWIMHEYRLVTAANAPQ 146
           GKPPHGSRTDWIMHEYRL    NA Q
Sbjct: 121 GKPPHGSRTDWIMHEYRL-NILNASQ 145

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302399017|gb|ADL36803.1| NAC domain class transcription factor [Malus x domestica]

 Score =  276 bits (706), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 127/153 (83%), Positives = 139/153 (90%), Gaps = 4/153 (2%)

Query: 1   MEKIDFMKNGVLRLPPGFRFHPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLP 60
           ME+I+F+KNGVLRLPPGFRFHPTDEELV+QYL+RK+++CPLPASIIPEVDVCK+DPWDLP
Sbjct: 1   MERINFVKNGVLRLPPGFRFHPTDEELVLQYLRRKVYSCPLPASIIPEVDVCKADPWDLP 60

Query: 61  GDVAQERYFFSTREAKYPNGNRSNRATGSGYWKATGLDKQIATSRGNQIVGMKKTLVFYR 120
           GD AQERYFFSTREAKYPNGNRSNRAT SGYWKATGLDKQI T RG Q+VGMKKTLVFYR
Sbjct: 61  GDCAQERYFFSTREAKYPNGNRSNRATSSGYWKATGLDKQIVTCRGGQVVGMKKTLVFYR 120

Query: 121 GKPPHGSRTDWIMHEYRLVTAAN----APQKKN 149
           GKPPHG+RTDWIMHEYR V   N    AP +KN
Sbjct: 121 GKPPHGTRTDWIMHEYRFVLPENPASIAPPEKN 153

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255629857|gb|ACU15279.1| unknown [Glycine max]

 Score =  276 bits (705), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 125/146 (85%), Positives = 135/146 (92%), Gaps = 1/146 (0%)

Query: 1   MEKIDFMKNGVLRLPPGFRFHPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLP 60
           MEK+ F+KNG LRLPPGFRFHPTDEELV+QYLKRK+F+CPLP SIIPEVDVCKSDPWDLP
Sbjct: 1   MEKVSFVKNGELRLPPGFRFHPTDEELVLQYLKRKVFSCPLPTSIIPEVDVCKSDPWDLP 60

Query: 61  GDVAQERYFFSTREAKYPNGNRSNRATGSGYWKATGLDKQIATSRGNQIVGMKKTLVFYR 120
           GD+ QERYFFST+EAKYPNGNRSNRAT SGYWKA+GLDKQI TS+GNQ+VGMKKTLVFYR
Sbjct: 61  GDLEQERYFFSTKEAKYPNGNRSNRATNSGYWKASGLDKQIVTSKGNQVVGMKKTLVFYR 120

Query: 121 GKPPHGSRTDWIMHEYRLVTAANAPQ 146
           GKPPHGSRTDWIMHEYRL    NA Q
Sbjct: 121 GKPPHGSRTDWIMHEYRL-NILNASQ 145

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449445576|ref|XP_004140548.1| PREDICTED: NAC transcription factor ONAC010-like [Cucumis sativus] gi|449533897|ref|XP_004173907.1| PREDICTED: NAC transcription factor ONAC010-like [Cucumis sativus]

 Score =  275 bits (702), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 125/153 (81%), Positives = 142/153 (92%), Gaps = 4/153 (2%)

Query: 1   MEKIDFMKNGVLRLPPGFRFHPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLP 60
           M+K++F+KNGVLRLPPGFRFHPTDEELVVQYLKRK+F+CPLPASIIPEV+VCK+DPWDLP
Sbjct: 1   MDKLNFVKNGVLRLPPGFRFHPTDEELVVQYLKRKVFSCPLPASIIPEVEVCKADPWDLP 60

Query: 61  GDVAQERYFFSTREAKYPNGNRSNRATGSGYWKATGLDKQIATSRGNQIVGMKKTLVFYR 120
           G++ QERYFFSTREAKYPNGNRSNRAT SGYWKATG+DKQI TS+GNQ+VG+KKTLVFYR
Sbjct: 61  GNMEQERYFFSTREAKYPNGNRSNRATTSGYWKATGIDKQIVTSKGNQVVGLKKTLVFYR 120

Query: 121 GKPPHGSRTDWIMHEYRLVT----AANAPQKKN 149
           GKPPHGSRTDWIMHEYRL +      NA Q+K+
Sbjct: 121 GKPPHGSRTDWIMHEYRLASPPTVCLNASQEKS 153

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|443682294|gb|AGC97437.1| NAC protein 7 [Gossypium hirsutum]

 Score =  273 bits (699), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 127/157 (80%), Positives = 141/157 (89%), Gaps = 2/157 (1%)

Query: 1   MEKIDFMKNGVLRLPPGFRFHPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLP 60
           MEK++F+KNGVLRLPPGFRFHPTDEELVVQYL+RK+ + PLPASIIPEVDVCK+DPWDLP
Sbjct: 2   MEKLNFVKNGVLRLPPGFRFHPTDEELVVQYLRRKVLSWPLPASIIPEVDVCKADPWDLP 61

Query: 61  GDVAQERYFFSTREAKYPNGNRSNRATGSGYWKATGLDKQIATSRGNQIVGMKKTLVFYR 120
           GD+ QERYFFSTREAKYPNGNRSNRAT SGYWKATG+DKQ+ +  GNQ+VGMKKTLVFYR
Sbjct: 62  GDLEQERYFFSTREAKYPNGNRSNRATLSGYWKATGIDKQVVSCSGNQVVGMKKTLVFYR 121

Query: 121 GKPPHGSRTDWIMHEYRLVTA--ANAPQKKNLPRPQL 155
           GKPP G+RTDWIMHEYRLVTA   NAP KKN  +  L
Sbjct: 122 GKPPQGTRTDWIMHEYRLVTADTCNAPHKKNQTQNHL 158

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	167
TAIR|locus:2179877	252	NAC083 "NAC domain containing	0.826	0.547	0.833	1.1e-64
TAIR|locus:2051053	268	NAC041 "NAC domain containing	0.820	0.511	0.778	4e-58
TAIR|locus:2090186	364	NAC2 "NAC domain containing pr	0.796	0.365	0.644	1.9e-44
TAIR|locus:2204685	253	NAC032 "NAC domain containing	0.874	0.577	0.580	1.2e-42
TAIR|locus:2095908	359	NAC047 "NAC domain containing	0.826	0.384	0.586	1.2e-42
TAIR|locus:2008490	323	NAC025 "NAC domain containing	0.850	0.439	0.593	1.1e-41
TAIR|locus:2007166	268	NAP "NAC-like, activated by AP	0.802	0.5	0.611	1.7e-41
TAIR|locus:2011516	320	NAM "NO APICAL MERISTEM" [Arab	0.748	0.390	0.630	5.9e-41
TAIR|locus:2009729	631	NAC028 "NAC domain containing	0.736	0.194	0.623	9.5e-41
TAIR|locus:2020123	301	NAC020 "NAC domain containing	0.874	0.485	0.522	1.1e-39

TAIR|locus:2179877 NAC083 "NAC domain containing protein 83" [Arabidopsis thaliana (taxid:3702)]

 Score = 659 (237.0 bits), Expect = 1.1e-64, P = 1.1e-64
 Identities = 115/138 (83%), Positives = 130/138 (94%)

Query:     1 MEKIDFMKNGVLRLPPGFRFHPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLP 60
             M+ +  +KNGVLRLPPGFRFHPTDEELVVQYLKRK+ + PLPASIIPE DVC++DPWDLP
Sbjct:     1 MDNVKLVKNGVLRLPPGFRFHPTDEELVVQYLKRKVCSSPLPASIIPEFDVCRADPWDLP 60

Query:    61 GDVAQERYFFSTREAKYPNGNRSNRATGSGYWKATGLDKQIATSRGNQIVGMKKTLVFYR 120
             G++ +ERYFFSTREAKYPNGNRSNRATGSGYWKATG+DK++ TSRGNQIVG+KKTLVFY+
Sbjct:    61 GNLEKERYFFSTREAKYPNGNRSNRATGSGYWKATGIDKRVVTSRGNQIVGLKKTLVFYK 120

Query:   121 GKPPHGSRTDWIMHEYRL 138
             GKPPHGSRTDWIMHEYRL
Sbjct:   121 GKPPHGSRTDWIMHEYRL 138

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0010089 "xylem development" evidence=RCA;IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0009651 "response to salt stress" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0010150 "leaf senescence" evidence=IMP

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

TAIR|locus:2051053 NAC041 "NAC domain containing protein 41" [Arabidopsis thaliana (taxid:3702)]

 Score = 597 (215.2 bits), Expect = 4.0e-58, P = 4.0e-58
 Identities = 109/140 (77%), Positives = 122/140 (87%)

Query:     1 MEKIDFMKN-GVLRLPPGFRFHPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDL 59
             MEK   +KN GVLRLPPGFRFHPTDEELVVQYL+RK+   PLPAS+IPE DVCKSDPWDL
Sbjct:     1 MEKRSSIKNRGVLRLPPGFRFHPTDEELVVQYLRRKVTGLPLPASVIPETDVCKSDPWDL 60

Query:    60 PGDVAQERYFFSTREAKYPNGNRSNRATGSGYWKATGLDKQIATSRGNQIVGMKKTLVFY 119
             PGD   E YFFSTREAKYPNGNRSNR+TGSGYWKATGLDKQI   +   +VGMKKTLVFY
Sbjct:    61 PGDCESEMYFFSTREAKYPNGNRSNRSTGSGYWKATGLDKQIGKKK--LVVGMKKTLVFY 118

Query:   120 RGKPPHGSRTDWIMHEYRLV 139
             +GKPP+G+RT+W++HEYRLV
Sbjct:   119 KGKPPNGTRTNWVLHEYRLV 138

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2090186 NAC2 "NAC domain containing protein 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 468 (169.8 bits), Expect = 1.9e-44, P = 1.9e-44
 Identities = 89/138 (64%), Positives = 101/138 (73%)

Query:    14 LPPGFRFHPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLPGDVA---QERYFF 70
             LPPGFRFHPTDEELVV YLKRK  + PLP +II EVD+ K DPW+LP   +   QE YFF
Sbjct:    17 LPPGFRFHPTDEELVVHYLKRKAASAPLPVAIIAEVDLYKFDPWELPAKASFGEQEWYFF 76

Query:    71 STREAKYPNGNRSNRATGSGYWKATGLDKQIATSRGNQIVGMKKTLVFYRGKPPHGSRTD 130
             S R+ KYPNG R NRA  SGYWKATG DK +  S GNQ VG+KK LVFY GKPP G ++D
Sbjct:    77 SPRDRKYPNGARPNRAATSGYWKATGTDKPVLASDGNQKVGVKKALVFYSGKPPKGVKSD 136

Query:   131 WIMHEYRLVTAANAPQKK 148
             WIMHEYRL+   N P  +
Sbjct:   137 WIMHEYRLIE--NKPNNR 152

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;NAS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

TAIR|locus:2204685 NAC032 "NAC domain containing protein 32" [Arabidopsis thaliana (taxid:3702)]

 Score = 451 (163.8 bits), Expect = 1.2e-42, P = 1.2e-42
 Identities = 90/155 (58%), Positives = 110/155 (70%)

Query:     7 MKNGV-LRLPPGFRFHPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLPGDVA- 64
             MK+G  L+ PPGFRFHPTDEELV+ YL RK  + P+PA II E+D+ + DPWDLP D+A 
Sbjct:     2 MKSGADLQFPPGFRFHPTDEELVLMYLCRKCASQPIPAPIITELDLYRYDPWDLP-DMAL 60

Query:    65 ---QERYFFSTREAKYPNGNRSNRATGSGYWKATGLDKQIATSRGNQIVGMKKTLVFYRG 121
                +E YFFS R+ KYPNG+R NRA G+GYWKATG DK I   +    VG+KK LVFY G
Sbjct:    61 YGEKEWYFFSPRDRKYPNGSRPNRAAGTGYWKATGADKPIGRPKP---VGIKKALVFYSG 117

Query:   122 KPPHGSRTDWIMHEYRLVTAANAPQKKNLPRPQLW 156
             KPP+G +T+WIMHEYRL     + +KKN  R   W
Sbjct:   118 KPPNGEKTNWIMHEYRLADVDRSVRKKNSLRLDDW 152

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

TAIR|locus:2095908 NAC047 "NAC domain containing protein 47" [Arabidopsis thaliana (taxid:3702)]

 Score = 451 (163.8 bits), Expect = 1.2e-42, P = 1.2e-42
 Identities = 85/145 (58%), Positives = 106/145 (73%)

Query:    14 LPPGFRFHPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLPGDVA---QERYFF 70
             LPPGFRFHPTDEEL++ YL++K+ + P+P SII +VD+ KSDPWDLP       +E YFF
Sbjct:    10 LPPGFRFHPTDEELILHYLRKKVSSSPVPLSIIADVDIYKSDPWDLPAKAPFGEKEWYFF 69

Query:    71 STREAKYPNGNRSNRATGSGYWKATGLDKQIATSRG---NQIVGMKKTLVFYRGKPPHGS 127
             S R+ KYPNG R NRA  SGYWKATG DK IA   G   ++ +G+KK LVFYRGKPP G 
Sbjct:    70 SPRDRKYPNGARPNRAAASGYWKATGTDKLIAVPNGEGFHENIGIKKALVFYRGKPPKGV 129

Query:   128 RTDWIMHEYRLVTAANAPQKKNLPR 152
             +T+WIMHEYRL  + + P++ N  R
Sbjct:   130 KTNWIMHEYRLADSLS-PKRINSSR 153

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006865 "amino acid transport" evidence=RCA

GO:0010260 "organ senescence" evidence=RCA

TAIR|locus:2008490 NAC025 "NAC domain containing protein 25" [Arabidopsis thaliana (taxid:3702)]

 Score = 442 (160.7 bits), Expect = 1.1e-41, P = 1.1e-41
 Identities = 92/155 (59%), Positives = 104/155 (67%)

Query:    14 LPPGFRFHPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLPGDVA---QERYFF 70
             LPPGFRFHPTDEELVV YLK+K  + PLP SII E+D+ K DPW+LP   +    E YFF
Sbjct:    16 LPPGFRFHPTDEELVVHYLKKKADSVPLPVSIIAEIDLYKFDPWELPSKASFGEHEWYFF 75

Query:    71 STREAKYPNGNRSNRATGSGYWKATGLDKQIATSRGNQIVGMKKTLVFYRGKPPHGSRTD 130
             S R+ KYPNG R NRA  SGYWKATG DK I T   ++ VG+KK LVFY GKPP G +TD
Sbjct:    76 SPRDRKYPNGVRPNRAATSGYWKATGTDKPIFTCNSHK-VGVKKALVFYGGKPPKGIKTD 134

Query:   131 WIMHEYRLV-----TAANAPQ----KKNLPRPQLW 156
             WIMHEYRL      TAA  P     +KN  R   W
Sbjct:   135 WIMHEYRLTDGNLSTAAKPPDLTTTRKNSLRLDDW 169

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2007166 NAP "NAC-like, activated by AP3/PI" [Arabidopsis thaliana (taxid:3702)]

 Score = 440 (159.9 bits), Expect = 1.7e-41, P = 1.7e-41
 Identities = 85/139 (61%), Positives = 97/139 (69%)

Query:    14 LPPGFRFHPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLPGDVA---QERYFF 70
             LPPGFRFHPTDEEL+V YL+ +  + P P SIIPEVD+ K DPW LP        E YFF
Sbjct:     9 LPPGFRFHPTDEELIVYYLRNQTMSKPCPVSIIPEVDIYKFDPWQLPEKTEFGENEWYFF 68

Query:    71 STREAKYPNGNRSNRATGSGYWKATGLDKQIATSRGNQIVGMKKTLVFYRGKPPHGSRTD 130
             S RE KYPNG R NRA  SGYWKATG DK I +   N  VG+KK LVFY+G+PP G +TD
Sbjct:    69 SPRERKYPNGVRPNRAAVSGYWKATGTDKAIHSGSSN--VGVKKALVFYKGRPPKGIKTD 126

Query:   131 WIMHEYRLVTAANAPQKKN 149
             WIMHEYRL  +  A  K+N
Sbjct:   127 WIMHEYRLHDSRKASTKRN 145

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0010150 "leaf senescence" evidence=IMP

GO:0009617 "response to bacterium" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=IMP

GO:0009908 "flower development" evidence=IMP

TAIR|locus:2011516 NAM "NO APICAL MERISTEM" [Arabidopsis thaliana (taxid:3702)]

 Score = 435 (158.2 bits), Expect = 5.9e-41, P = 5.9e-41
 Identities = 82/130 (63%), Positives = 98/130 (75%)

Query:    14 LPPGFRFHPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLPGDVA---QERYFF 70
             LPPGFRFHPTDEELV+ YLKRK  + PLP +II +VD+ K DPW+LP   +   QE YFF
Sbjct:    17 LPPGFRFHPTDEELVIHYLKRKADSVPLPVAIIADVDLYKFDPWELPAKASFGEQEWYFF 76

Query:    71 STREAKYPNGNRSNRATGSGYWKATGLDKQIATSRG--NQIVGMKKTLVFYRGKPPHGSR 128
             S R+ KYPNG R NRA  SGYWKATG DK + ++ G  ++ VG+KK LVFY GKPP G +
Sbjct:    77 SPRDRKYPNGARPNRAATSGYWKATGTDKPVISTGGGGSKKVGVKKALVFYSGKPPKGVK 136

Query:   129 TDWIMHEYRL 138
             +DWIMHEYRL
Sbjct:   137 SDWIMHEYRL 146

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

TAIR|locus:2009729 NAC028 "NAC domain containing protein 28" [Arabidopsis thaliana (taxid:3702)]

 Score = 434 (157.8 bits), Expect = 9.5e-41, P = 9.5e-41
 Identities = 81/130 (62%), Positives = 101/130 (77%)

Query:    14 LPPGFRFHPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLPGDVAQ-----ERY 68
             +PPGFRFHPTDEELV+ YLKRKI    +   IIPE+D+ K +PWDLPG         E +
Sbjct:     6 MPPGFRFHPTDEELVIYYLKRKINGRTIELEIIPEIDLYKCEPWDLPGKSLLPSKDLEWF 65

Query:    69 FFSTREAKYPNGNRSNRATGSGYWKATGLDKQIATSRGNQIVGMKKTLVFYRGKPPHGSR 128
             FFS R+ KYPNG+R+NRAT +GYWKATG D+++ TS  +++VG KKTLV+YRG+ PHGSR
Sbjct:    66 FFSPRDRKYPNGSRTNRATKAGYWKATGKDRKV-TSH-SRMVGTKKTLVYYRGRAPHGSR 123

Query:   129 TDWIMHEYRL 138
             TDW+MHEYRL
Sbjct:   124 TDWVMHEYRL 133

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2020123 NAC020 "NAC domain containing protein 20" [Arabidopsis thaliana (taxid:3702)]

 Score = 423 (154.0 bits), Expect = 1.1e-39, P = 1.1e-39
 Identities = 81/155 (52%), Positives = 110/155 (70%)

Query:    12 LRLPPGFRFHPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLP------GDVAQ 65
             + LPPGFRFHPTDEELV  YL RK+    +   IIPEVD+ K +PWDLP      G+   
Sbjct:     4 MSLPPGFRFHPTDEELVAYYLDRKVNGQAIELEIIPEVDLYKCEPWDLPEKSFLPGN-DM 62

Query:    66 ERYFFSTREAKYPNGNRSNRATGSGYWKATGLDKQIATSRGNQIVGMKKTLVFYRGKPPH 125
             E YF+STR+ KYPNG+R+NRAT +GYWKATG D+ + + +    +GMKKTLV+YRG+ PH
Sbjct:    63 EWYFYSTRDKKYPNGSRTNRATRAGYWKATGKDRTVESKKMK--MGMKKTLVYYRGRAPH 120

Query:   126 GSRTDWIMHEYRLVTAANAPQKKNLPRPQLWQRTI 160
             G RT+W+MHEYRL  A ++  K++    +++++ I
Sbjct:   121 GLRTNWVMHEYRLTHAPSSSLKESYALCRVFKKNI 155

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	167
pfam02365	130	pfam02365, NAM, No apical meristem (NAM) protein	1e-76

>gnl|CDD|216997 pfam02365, NAM, No apical meristem (NAM) protein

 Score =  224 bits (572), Expect = 1e-76
 Identities = 87/130 (66%), Positives = 103/130 (79%), Gaps = 6/130 (4%)

Query: 14  LPPGFRFHPTDEELVVQYLKRKIFACPLPA-SIIPEVDVCKSDPWDLPGDVAQ----ERY 68
           LPPGFRFHPTDEELVV YLKRK+   PLP   +IPEVD+ K +PWDLP   A+    E Y
Sbjct: 1   LPPGFRFHPTDEELVVYYLKRKVLGKPLPLLDVIPEVDIYKFEPWDLPDGKAKGGDREWY 60

Query: 69  FFSTREAKYPNGNRSNRATGSGYWKATGLDKQIATSRGNQIVGMKKTLVFYRGKPPHGSR 128
           FFS R+ KYPNG+R+NRATGSGYWKATG DK +  S+G ++VGMKKTLVFY+G+ P G +
Sbjct: 61  FFSPRDRKYPNGSRTNRATGSGYWKATGKDKPV-LSKGGEVVGMKKTLVFYKGRAPKGEK 119

Query: 129 TDWIMHEYRL 138
           TDW+MHEYRL
Sbjct: 120 TDWVMHEYRL 129

This is a family of no apical meristem (NAM) proteins these are plant development proteins. Mutations in NAM result in the failure to develop a shoot apical meristem in petunia embryos. NAM is indicated as having a role in determining positions of meristems and primordial. One member of this family NAP (NAC-like, activated by AP3/PI) is encoded by the target genes of the AP3/PI transcriptional activators and functions in the transition between growth by cell division and cell expansion in stamens and petals. Length = 130

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	167
PF02365	129	NAM: No apical meristem (NAM) protein; InterPro: I	100.0

>PF02365 NAM: No apical meristem (NAM) protein; InterPro: IPR003441 The NAC domain (for Petunia hybrida (Petunia) NAM and for Arabidopsis ATAF1, ATAF2, and CUC2) is an N-terminal module of ~160 amino acids, which is found in proteins of the NAC family of plant-specific transcriptional regulators (no apical meristem (NAM) proteins) []

Probab=100.00  E-value=8.7e-46  Score=275.74  Aligned_cols=125  Identities=57%  Similarity=1.143  Sum_probs=95.2

Q ss_pred             CCCCeEECCChHHHHHHHHHHhHhCCCCCC-cceeeccCCCCCCCCCCc---ccCCceEEeecccccCCCCCCCcccCCc
Q 031030           14 LPPGFRFHPTDEELVVQYLKRKIFACPLPA-SIIPEVDVCKSDPWDLPG---DVAQERYFFSTREAKYPNGNRSNRATGS   89 (167)
Q Consensus        14 LppG~rF~PTDeELi~~YL~~k~~g~~l~~-~~I~~~Dvy~~~P~~Lp~---~~~~~~yFF~~~~~k~~~g~r~~R~~~~   89 (167)
                      |||||||+|||+|||.+||++|+.|.+++. ++|+++|||++|||+|+.   ..+++||||++++.++.++.|.+|++++
T Consensus         1 LP~G~rF~PtD~ELi~~yL~~k~~g~~~~~~~~i~~~Diy~~~P~~L~~~~~~~~~~~yFF~~~~~~~~~~~r~~R~~~~   80 (129)
T PF02365_consen    1 LPPGFRFRPTDEELINHYLRPKILGEPLPCEDVIHDVDIYSAHPWELPAKFKGGDEEWYFFSPRKKKYPNGGRPNRVTGG   80 (129)
T ss_dssp             --TTEEE---HHHHHHCTHHHHHTT-HHCS-CHSEE--GGGS-GGGCHHHSSS-SSEEEEEEE----------S-EEETT
T ss_pred             CCCceEecCChHHHHHHHHHHHhcCCCCCcccceeecccCccChHHhhhhccCCCceEEEEEecccccCCcccccccccc
Confidence            899999999999999999999999999888 799999999999999993   3357999999999999999999999999


Q ss_pred             ceeeeeCCCceEEeCCCCeEEEEEEEEEEEeCCCCCCCCcCeEEEEEEeC
Q 031030           90 GYWKATGLDKQIATSRGNQIVGMKKTLVFYRGKPPHGSRTDWIMHEYRLV  139 (167)
Q Consensus        90 G~Wk~~g~~k~I~~~~~g~~iG~k~~l~F~~~~~~~~~kt~W~M~EY~l~  139 (167)
                      |+||.+|+.++|.+. +|.+||+|++|+||.+..+++.+|+|+||||+|.
T Consensus        81 G~Wk~~g~~~~i~~~-~g~~iG~k~~l~f~~~~~~~~~kt~W~M~EY~L~  129 (129)
T PF02365_consen   81 GYWKSTGKEKPIKDP-GGKVIGFKKTLVFYSGKSPNGKKTGWVMHEYSLE  129 (129)
T ss_dssp             EEEEEECEEEEEEE--TTCEEEEEEEEEEEESSTTS-EEEEEEEEEEEE-
T ss_pred             eEEeecccccccccc-cceeeeeEEEEEEEeccCCCCCcCCeEEEEEEeC
Confidence            999999999999874 8899999999999998878889999999999984

NAC proteins are involved in developmental processes, including formation of the shoot apical meristem, floral organs and lateral shoots, as well as in plant hormonal control and defence. The NAC domain is accompanied by diverse C-terminal transcriptional activation domains. The NAC domain has been shown to be a DNA-binding domain (DBD) and a dimerization domain [,]. The NAC domain can be subdivided into five subdomains (A-E). Each subdomain is distinguishable by blocks of heterogeneous amino acids or gaps. While the NAC domains were rich in basic amino acids (R, K and H) as a whole, the distribution of positive and negative amino acids in each subdomain were unequal. Subdomains C and D are rich in basic amino acids but poor in acidic amino acids, while subdomain B contains a high proportion of acidic amino acids. Putative nuclear localization signals (NLS) have been detected in subdomains C and D []. The DBD is contained within a 60 amino acid region located within subdomains D and E []. The overall structure of the NAC domain monomer consists of a very twisted antiparallel beta-sheet, which packs against an N-terminal alpha-helix on one side and one shorter helix on the other side surrounded by a few helical elements. The structure suggests that the NAC domain mediates dimerization through conserved interactions including a salt bridge, and DNA binding through the NAC dimer face rich in positive charges [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1UT4_A 3SWM_B 4DUL_B 3SWP_D 1UT7_B 3ULX_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	167
3ulx_A	174	Crystal Structural Of The Conserved Domain Of Rice		7e-39
3swm_A	174	The Nac Domain Of Anac019 In Complex With Dna, Gold		2e-38
1ut4_A	171	Structure Of The Conserved Domain Of Anac, A Member		2e-38

>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice Stress-Responsive Nac1 Length = 174

Iteration: 1
 Score =  156 bits (394), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 82/130 (63%), Positives = 94/130 (72%), Gaps = 5/130 (3%)
Query: 12  LRLPPGFRFHPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLPGDV---AQERY 68
           L LPPGFRFHPTD+ELV  YL RK     LP  II EVD+ K DPWDLP      A+E Y
Sbjct: 13  LNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGAREWY 72
Query: 69  FFSTREAKYPNGNRSNRATGSGYWKATGLDKQIATSRGNQIVGMKKTLVFYRGKPPHGSR 128
           FF+ R+ KYPNG+R NRA G+GYWKATG DK +A  RG + +G+KK LVFY GK P G +
Sbjct: 73  FFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVA-PRG-RTLGIKKALVFYAGKAPRGVK 130
Query: 129 TDWIMHEYRL 138
           TDWIMHEYRL
Sbjct: 131 TDWIMHEYRL 140

>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold Derivative Length = 174

Iteration: 1
 Score =  154 bits (390), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 78/131 (59%), Positives = 92/131 (70%), Gaps = 5/131 (3%)
Query: 12  LRLPPGFRFHPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLPGDV---AQERY 68
           L LPPGFRF+PTDEEL+VQYL RK         +I E+D+ K DPW LP       +E Y
Sbjct: 18  LSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWY 77
Query: 69  FFSTREAKYPNGNRSNRATGSGYWKATGLDKQIATSRGNQIVGMKKTLVFYRGKPPHGSR 128
           FFS R+ KYPNG+R NR  GSGYWKATG DK I+T    Q VG+KK LVFY GK P G++
Sbjct: 78  FFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTE--GQRVGIKKALVFYIGKAPKGTK 135
Query: 129 TDWIMHEYRLV 139
           T+WIMHEYRL+
Sbjct: 136 TNWIMHEYRLI 146

>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The Nac Family Of Transcription Factors Length = 171

Iteration: 1
 Score =  154 bits (390), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 78/131 (59%), Positives = 92/131 (70%), Gaps = 5/131 (3%)
Query: 12  LRLPPGFRFHPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLPGDV---AQERY 68
           L LPPGFRF+PTDEEL+VQYL RK         +I E+D+ K DPW LP       +E Y
Sbjct: 15  LSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWY 74
Query: 69  FFSTREAKYPNGNRSNRATGSGYWKATGLDKQIATSRGNQIVGMKKTLVFYRGKPPHGSR 128
           FFS R+ KYPNG+R NR  GSGYWKATG DK I+T    Q VG+KK LVFY GK P G++
Sbjct: 75  FFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTE--GQRVGIKKALVFYIGKAPKGTK 132
Query: 129 TDWIMHEYRLV 139
           T+WIMHEYRL+
Sbjct: 133 TNWIMHEYRLI 143

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	167
3ulx_A	174	Stress-induced transcription factor NAC1; NAC fami	1e-85
1ut7_A	171	No apical meristem protein; transcription regulati	1e-84

>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} Length = 174

 Score =  248 bits (634), Expect = 1e-85
 Identities = 82/154 (53%), Positives = 96/154 (62%), Gaps = 5/154 (3%)

Query: 5   DFMKNGVLRLPPGFRFHPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLPGDVA 64
           +      L LPPGFRFHPTD+ELV  YL RK     LP  II EVD+ K DPWDLP    
Sbjct: 6   ERDAEAELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERAL 65

Query: 65  ---QERYFFSTREAKYPNGNRSNRATGSGYWKATGLDKQIATSRGNQIVGMKKTLVFYRG 121
              +E YFF+ R+ KYPNG+R NRA G+GYWKATG DK +A     + +G+KK LVFY G
Sbjct: 66  FGAREWYFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVAP--RGRTLGIKKALVFYAG 123

Query: 122 KPPHGSRTDWIMHEYRLVTAANAPQKKNLPRPQL 155
           K P G +TDWIMHEYRL  A  A         +L
Sbjct: 124 KAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLRL 157

>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A Length = 171

 Score =  245 bits (627), Expect = 1e-84
 Identities = 80/153 (52%), Positives = 95/153 (62%), Gaps = 5/153 (3%)

Query: 1   MEKIDFMKNGVLRLPPGFRFHPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLP 60
           M   +      L LPPGFRF+PTDEEL+VQYL RK         +I E+D+ K DPW LP
Sbjct: 4   MGIQETDPLTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLP 63

Query: 61  GDVA---QERYFFSTREAKYPNGNRSNRATGSGYWKATGLDKQIATSRGNQIVGMKKTLV 117
                  +E YFFS R+ KYPNG+R NR  GSGYWKATG DK I  S   Q VG+KK LV
Sbjct: 64  NKALFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKII--STEGQRVGIKKALV 121

Query: 118 FYRGKPPHGSRTDWIMHEYRLVTAANAPQKKNL 150
           FY GK P G++T+WIMHEYRL+  +       L
Sbjct: 122 FYIGKAPKGTKTNWIMHEYRLIEPSRRNGSTKL 154

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	167
3ulx_A	174	Stress-induced transcription factor NAC1; NAC fami	100.0
1ut7_A	171	No apical meristem protein; transcription regulati	100.0

>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1

Probab=100.00  E-value=7.4e-55  Score=338.78  Aligned_cols=154  Identities=56%  Similarity=0.974  Sum_probs=131.0

Q ss_pred             CCccCCCCCeEECCChHHHHHHHHHHhHhCCCCCCcceeeccCCCCCCCCCCccc---CCceEEeecccccCCCCCCCcc
Q 031030            9 NGVLRLPPGFRFHPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLPGDV---AQERYFFSTREAKYPNGNRSNR   85 (167)
Q Consensus         9 ~~~~~LppG~rF~PTDeELi~~YL~~k~~g~~l~~~~I~~~Dvy~~~P~~Lp~~~---~~~~yFF~~~~~k~~~g~r~~R   85 (167)
                      ...+.|||||||+|||||||.|||++|+.|.++|.++|+++|||++|||+||+..   +.+||||+++.+|+++|.|.+|
T Consensus        10 ~~~~~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~~~I~evDvy~~~Pw~Lp~~~~~g~~ewYFFs~r~~ky~~g~R~nR   89 (174)
T 3ulx_A           10 EAELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGAREWYFFTPRDRKYPNGSRPNR   89 (174)
T ss_dssp             CSTTTCCTTCCCCCCHHHHHHHTHHHHHHTCCCSSSCCEECCGGGSCGGGSGGGCSSCSSEEEEEEECCC-----CCSCE
T ss_pred             ccccCCCCcceeCCCHHHHHHHHHHHHhcCCCCCcCeeeecccccCCchhhhhhhccCCceEEEEeccccccCCCCCcee
Confidence            4578999999999999999999999999999999999999999999999999864   4789999999999999999999


Q ss_pred             cCCcceeeeeCCCceEEeCCCCeEEEEEEEEEEEeCCCCCCCCcCeEEEEEEeCCCCCCcc--CCCCCCcchhheeccee
Q 031030           86 ATGSGYWKATGLDKQIATSRGNQIVGMKKTLVFYRGKPPHGSRTDWIMHEYRLVTAANAPQ--KKNLPRPQLWQRTIGFY  163 (167)
Q Consensus        86 ~~~~G~Wk~~g~~k~I~~~~~g~~iG~k~~l~F~~~~~~~~~kt~W~M~EY~l~~~~~~~~--~~~~~~~~~~~~~~~~~  163 (167)
                      ++++|+||++|++++|.+  .|.+||+|++|+||.++.+++.+|+|+||||+|.++...+.  .....+.++|++|++|.
T Consensus        90 ~t~~G~WkatG~dk~I~~--~g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~~~~~~~~~~~~~~~~~wVlCrvf~  167 (174)
T 3ulx_A           90 AAGNGYWKATGADKPVAP--RGRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYN  167 (174)
T ss_dssp             EETTEEEEECSCCEEECC--SSSCCEEEEEEEEEESSTTSCEEEEEEEEEEEECSCC-----------CCSSEEEEEEEE
T ss_pred             ecCCceEccCCCCcEEee--CCcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeCCCCCcccccccCCCCCCCEEEEEEEE
Confidence            999999999999999975  47899999999999999999999999999999999865432  22234789999999986


Q ss_pred             c
Q 031030          164 A  164 (167)
Q Consensus       164 ~  164 (167)
                      -
T Consensus       168 K  168 (174)
T 3ulx_A          168 K  168 (174)
T ss_dssp             S
T ss_pred             c
Confidence            3

>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A

Probab=100.00  E-value=2.6e-54  Score=335.24  Aligned_cols=159  Identities=50%  Similarity=0.871  Sum_probs=130.5

Q ss_pred             CCcccccCCCccCCCCCeEECCChHHHHHHHHHHhHhCCCCCCcceeeccCCCCCCCCCCccc---CCceEEeecccccC
Q 031030            1 MEKIDFMKNGVLRLPPGFRFHPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLPGDV---AQERYFFSTREAKY   77 (167)
Q Consensus         1 m~~~~~~~~~~~~LppG~rF~PTDeELi~~YL~~k~~g~~l~~~~I~~~Dvy~~~P~~Lp~~~---~~~~yFF~~~~~k~   77 (167)
                      |+..+-....++.|||||||+|||||||.|||++|+.|.+++.++|+++|||.+|||+||+..   +.+||||+++.+++
T Consensus         4 m~~~~~~~~~~~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~~~I~e~Diy~~~Pw~Lp~~~~~g~~ewyFFs~r~~k~   83 (171)
T 1ut7_A            4 MGIQETDPLTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFFSPRDRKY   83 (171)
T ss_dssp             CCCC----CCSSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSSSCSSEEEEEEECCC--
T ss_pred             cccccCCcccccCCCCcceeCCChHHHHHHHHHHHhcCCCCCCCeEeecccccCChhHhhchhhcCCccEEEEecccccc
Confidence            666655556689999999999999999999999999999999999999999999999999764   57999999999999


Q ss_pred             CCCCCCcccCCcceeeeeCCCceEEeCCCCeEEEEEEEEEEEeCCCCCCCCcCeEEEEEEeCCCCCCccCCCCCCcchhh
Q 031030           78 PNGNRSNRATGSGYWKATGLDKQIATSRGNQIVGMKKTLVFYRGKPPHGSRTDWIMHEYRLVTAANAPQKKNLPRPQLWQ  157 (167)
Q Consensus        78 ~~g~r~~R~~~~G~Wk~~g~~k~I~~~~~g~~iG~k~~l~F~~~~~~~~~kt~W~M~EY~l~~~~~~~~~~~~~~~~~~~  157 (167)
                      ++|.|.+|++++|+||++|++++|.+  .+.+||+|++|+||.++.+++.+|+|+||||+|.+++.   .......++|+
T Consensus        84 ~~g~R~~R~t~~G~Wk~tG~~k~I~~--~~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~~---~~~~~~~~~~V  158 (171)
T 1ut7_A           84 PNGSRPNRVAGSGYWKATGTDKIIST--EGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSR---RNGSTKLDDWV  158 (171)
T ss_dssp             -----CCEEETTEEEEEEEEEEEEEE--TTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC-----------CCEE
T ss_pred             CCCCcccccCCCCEEeccCCCceEEe--cCcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCcc---ccCcccCCCEE
Confidence            99999999999999999999999986  46999999999999999999999999999999998862   22334789999


Q ss_pred             eecceec
Q 031030          158 RTIGFYA  164 (167)
Q Consensus       158 ~~~~~~~  164 (167)
                      +|.++.-
T Consensus       159 lCrv~~k  165 (171)
T 1ut7_A          159 LCRIYKK  165 (171)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEEc
Confidence            9999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	167
d1ut7a_	166	b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mou	3e-60

>d1ut7a_ b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 166

class: All beta proteins
fold: NAC domain
superfamily: NAC domain
family: NAC domain
domain: No apical meristem (NAM, ANAC)
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  182 bits (463), Expect = 3e-60
 Identities = 78/137 (56%), Positives = 92/137 (67%), Gaps = 5/137 (3%)

Query: 12  LRLPPGFRFHPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLPG---DVAQERY 68
           L LPPGFRF+PTDEEL+VQYL RK         +I E+D+ K DPW LP       +E Y
Sbjct: 15  LSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWY 74

Query: 69  FFSTREAKYPNGNRSNRATGSGYWKATGLDKQIATSRGNQIVGMKKTLVFYRGKPPHGSR 128
           FFS R+ KYPNG+R NR  GSGYWKATG DK I  S   Q VG+KK LVFY GK P G++
Sbjct: 75  FFSPRDRKYPNGSRPNRVAGSGYWKATGTDKII--STEGQRVGIKKALVFYIGKAPKGTK 132

Query: 129 TDWIMHEYRLVTAANAP 145
           T+WIMHEYRL+  +   
Sbjct: 133 TNWIMHEYRLIEPSRRN 149

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	167
d1ut7a_	166	No apical meristem (NAM, ANAC) {Mouse-ear cress (A	100.0

>d1ut7a_ b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: NAC domain
superfamily: NAC domain
family: NAC domain
domain: No apical meristem (NAM, ANAC)
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=2.4e-53  Score=326.66  Aligned_cols=158  Identities=51%  Similarity=0.867  Sum_probs=130.4

Q ss_pred             CCcccccCCCccCCCCCeEECCChHHHHHHHHHHhHhCCCCCCcceeeccCCCCCCCCCCccc---CCceEEeecccccC
Q 031030            1 MEKIDFMKNGVLRLPPGFRFHPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLPGDV---AQERYFFSTREAKY   77 (167)
Q Consensus         1 m~~~~~~~~~~~~LppG~rF~PTDeELi~~YL~~k~~g~~l~~~~I~~~Dvy~~~P~~Lp~~~---~~~~yFF~~~~~k~   77 (167)
                      |++++.....++.|||||||+|||+|||.+||.+|+.|.|++.++|+++|||++|||+||+..   +++||||+++.+++
T Consensus         4 ~~~~~~~~~~~l~LPpG~RF~PTDeELv~~YL~~Ki~g~~l~~~~I~~~Dvy~~~Pw~Lp~~~~~~~~~wyFft~~~~k~   83 (166)
T d1ut7a_           4 MGIQETDPLTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFFSPRDRKY   83 (166)
T ss_dssp             CCCC----CCSSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSSSCSSEEEEEEECCC--
T ss_pred             ccccccCccccccCCCccccCCCcHHHHHHHHHHHHcCCCCCcccceeccCCcCChhhccchhccCcceEEEEeeecccc
Confidence            889999999999999999999999999999999999999999999999999999999999754   57899999999999


Q ss_pred             CCCCCCcccCCcceeeeeCCCceEEeCCCCeEEEEEEEEEEEeCCCCCCCCcCeEEEEEEeCCCCCCccCCCCCCcchhh
Q 031030           78 PNGNRSNRATGSGYWKATGLDKQIATSRGNQIVGMKKTLVFYRGKPPHGSRTDWIMHEYRLVTAANAPQKKNLPRPQLWQ  157 (167)
Q Consensus        78 ~~g~r~~R~~~~G~Wk~~g~~k~I~~~~~g~~iG~k~~l~F~~~~~~~~~kt~W~M~EY~l~~~~~~~~~~~~~~~~~~~  157 (167)
                      +++.|.+|++++|+||.+|+++.|.+  +|.+||+|++|+||+++.+++.+|+|+||||+|.++....   ...+.++|+
T Consensus        84 ~~g~r~~R~~g~G~Wk~~g~~~~i~~--~g~~vG~kk~l~fy~~~~~~~~~t~W~M~EY~l~~~~~~~---~~~~~~~~V  158 (166)
T d1ut7a_          84 PNGSRPNRVAGSGYWKATGTDKIIST--EGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRRN---GSTKLDDWV  158 (166)
T ss_dssp             -----CCEEETTEEEEEEEEEEEEEE--TTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC-----------CCEE
T ss_pred             CCCCccccccCCCEecccCCCceEec--CCcEEEEEEEEEEEecCCCCCCccCeEEEEEecCCccccc---CccccCCEE
Confidence            99999999999999999999988874  6789999999999999999999999999999998875543   234678999


Q ss_pred             eeccee
Q 031030          158 RTIGFY  163 (167)
Q Consensus       158 ~~~~~~  163 (167)
                      +|..+.
T Consensus       159 LCrI~~  164 (166)
T d1ut7a_         159 LCRIYK  164 (166)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            999863