Citrus Sinensis ID: 031033

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------
Protein Sequence
MDPFSGSGSWNMMPSIPSHNSSPAASNQDNLFLSPQHQQQFYQQPTQFPQQQFQQQGRTPQQQQQPQQQQQQNQHHQSLASNFHLLHLMENLADAIENGTRDQQSDALVNELNNHFEKCQQLLSSISESLDTKAMTVEGQRRKLEESEQLLNQRKSVMLMLRVFCFQ
Secondary Structure (PSIPRED)
ccccccccccEEcccccccccccccccccccccccccccccccccccccccHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHcHHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccHEEEcccccccccccHHHHHcccHHHccccccHccHHHHccccccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccEEcHHHHHHHHHHHHHHHHHHHHHHcEEEEcc
Coil and Loop (DISEMBL)
mdpfsgsgswnmmpsipshnsspaasnqdnlflspqhqqqfyqqptqfpqqqfqqqgrtpqqqqqpqqqQQQNQHHQSLASNFHLLHLMENLADAIENGTRDQQSDALVNELNNHFEKCQQLLSSISESLDTKAMTVEGQRRKLEESEQLLNQRKSVMLMLRVFCFQ
Flexible Loop (DISEMBL)
MDPFSGSGSWNMMPSIPSHNSSPAASNQDNLFLSPQHQQQFYQQPTQFPQQQFQQQGRTPQQQQQPQQQQQQNQHHQSLASNFHLLHLMENLADAIENGTRDQQSDALVNELNNHFEKCQQLLSSISESLDTKAMTVEGQRRKLEESEQLLNQRKSVMLMLRVFCFQ
Low Complexity Region (SEG)
MDPFSGSGSWNMMPSIPSHNSSPAASNQDNLFLSpqhqqqfyqqptqfpqqqfqqqgrtpqqqqqpqqqqqqnqhhqSLASNFHLLHLMENLADAIENGTRDQQSDALVNELNNHFEKCQQLLSSISESLDTKAMTVEGQRRKLEESEQLLNQRKSVMLMLRVFCFQ
Disordered region (IsUnstruct)
**********************************************************************************FHLLHLMENLAD**************************************************************VMLMLRVFCF*
Disordered Region (DISOPRED)
*********WN**********************************************************************NFHLLHLMENLADAIENGTRDQQSDALVNELNNHFEKCQQLLS*******************************SVMLMLRVFCFQ
Disordered Region (DISEMBL)
********SWNMMPSIPS********NQDNLFLSPQHQ***************************************SLASNFHLLHLMENLADAIENGTRDQQSDALVNELNNHFEKCQQLLSSISESLDTKAMTVEGQRRKLEESEQLLNQRKSVMLMLRVFCFQ
Disordered Region (DISPRO)
***************************QDNLFLS*******************************************SLASNFHLLHLMENLADAIENGTRDQQSDALVNELNNHFEKCQQLLSSISESLDTKAMTVEGQRRKLEESEQLLNQRKSVMLMLRVFCFQ
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDPFSGSGSWNMMPSIPSHNSSPAASNQDNLFLSPQHQQQFYQQPTQFPQQQFQQQGRTPQQQQQPQQQQQQNQHHQSLASNFHLLHLMENLADAIENGTRDQQSDALVNELNNHFEKCQQLLSSISESLDTKAMTVEGQRRKLEESEQLLNQRKSVMLMLRVFCFQ
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	167	2.2.26 [Sep-21-2011]
Q8RWA2	244	Mediator of RNA polymeras	yes	no	0.532	0.364	0.685	5e-29

>sp|Q8RWA2|MED9_ARATH Mediator of RNA polymerase II transcription subunit 9 OS=Arabidopsis thaliana GN=MED9 PE=1 SV=1

 Score =  127 bits (318), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 61/89 (68%), Positives = 75/89 (84%)

Query: 74  QHHQSLASNFHLLHLMENLADAIENGTRDQQSDALVNELNNHFEKCQQLLSSISESLDTK 133
           Q HQSLAS+FHL  ++E LAD IENGTRDQ SDALVNELN+HF+KCQQLL+SIS SL +K
Sbjct: 145 QQHQSLASHFHLYPMVEKLADVIENGTRDQNSDALVNELNSHFDKCQQLLNSISGSLGSK 204

Query: 134 AMTVEGQRRKLEESEQLLNQRKSVMLMLR 162
            MTV+GQ+R +EESEQLL QR+ +++  R
Sbjct: 205 TMTVDGQKRNVEESEQLLQQRRDLIVEYR 233

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.
Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	167
224135025	190	predicted protein [Populus trichocarpa]	0.952	0.836	0.617	2e-39
225442291	166	PREDICTED: uncharacterized protein LOC10	0.910	0.915	0.637	2e-33
356522394	195	PREDICTED: uncharacterized protein LOC10	0.508	0.435	0.741	6e-29
449458229	133	PREDICTED: mediator of RNA polymerase II	0.485	0.609	0.765	6e-28
22330255	244	uncharacterized protein [Arabidopsis tha	0.532	0.364	0.685	2e-27
351723835	177	uncharacterized protein LOC100305737 [Gl	0.922	0.870	0.581	2e-27
12321581	234	hypothetical protein [Arabidopsis thalia	0.538	0.384	0.688	9e-27
357513635	196	hypothetical protein MTR_8g017180 [Medic	0.485	0.413	0.728	2e-26
242074772	174	hypothetical protein SORBIDRAFT_06g03295	0.586	0.563	0.582	5e-24
388496346	197	unknown [Lotus japonicus]	0.473	0.401	0.683	8e-24

>gi|224135025|ref|XP_002327548.1| predicted protein [Populus trichocarpa] gi|222836102|gb|EEE74523.1| predicted protein [Populus trichocarpa]

 Score =  167 bits (423), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 108/175 (61%), Positives = 124/175 (70%), Gaps = 16/175 (9%)

Query: 4   FSGSGSWNMMPSIPSHNSSPAASNQDNLFLSPQHQQQFYQQPTQFPQQQFQQQGRTPQQQ 63
           FSG GSW ++PS+P+H+ SPA SNQD  +LSPQ QQ  + Q  Q  Q   QQQ    QQQ
Sbjct: 5   FSGGGSWTVIPSVPTHSGSPAHSNQDQFYLSPQQQQPQFTQFQQQQQFNQQQQQFQQQQQ 64

Query: 64  QQPQQQQQQ----------------NQHHQSLASNFHLLHLMENLADAIENGTRDQQSDA 107
            Q QQ QQQ                N HHQSLAS+FHLL L ENLADAIENGTRDQ SDA
Sbjct: 65  YQQQQSQQQRFIQQQQQQQPQVQQQNHHHQSLASHFHLLQLAENLADAIENGTRDQHSDA 124

Query: 108 LVNELNNHFEKCQQLLSSISESLDTKAMTVEGQRRKLEESEQLLNQRKSVMLMLR 162
           LVNELN HF+KCQQLL+SIS S++ KAMTVEGQ+RKLEESEQLLNQR+ ++   R
Sbjct: 125 LVNELNTHFDKCQQLLNSISSSINAKAMTVEGQKRKLEESEQLLNQRRELIGKYR 179

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225442291|ref|XP_002280177.1| PREDICTED: uncharacterized protein LOC100260024 [Vitis vinifera] gi|147856497|emb|CAN78638.1| hypothetical protein VITISV_031737 [Vitis vinifera] gi|297743090|emb|CBI35957.3| unnamed protein product [Vitis vinifera]

 Score =  147 bits (370), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 102/160 (63%), Positives = 123/160 (76%), Gaps = 8/160 (5%)

Query: 3   PFSGSGSWNMMPSIPSHNSSPAASNQDNLFLSPQHQQQFYQQPTQFPQQQFQQQGRTPQQ 62
           P+SG GSW+M+PS+  H+++   S+QD+            QQP Q    Q QQQ    QQ
Sbjct: 4   PYSG-GSWSMIPSMSPHSNAATPSDQDH-------LFLQQQQPQQHHLYQHQQQRLHHQQ 55

Query: 63  QQQPQQQQQQNQHHQSLASNFHLLHLMENLADAIENGTRDQQSDALVNELNNHFEKCQQL 122
           QQQ QQQQQQ+ HHQSLAS+FHLLHL+ENL+DAIENGTRDQ SDALV ELN+HFEKCQQL
Sbjct: 56  QQQQQQQQQQHHHHQSLASHFHLLHLVENLSDAIENGTRDQHSDALVRELNSHFEKCQQL 115

Query: 123 LSSISESLDTKAMTVEGQRRKLEESEQLLNQRKSVMLMLR 162
           L+SIS S++TKAMTVEGQ+RKLEESEQLLNQR+ ++   R
Sbjct: 116 LNSISVSINTKAMTVEGQKRKLEESEQLLNQRRDLIAKYR 155

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356522394|ref|XP_003529831.1| PREDICTED: uncharacterized protein LOC100803884 [Glycine max]

 Score =  132 bits (331), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 63/85 (74%), Positives = 78/85 (91%)

Query: 78  SLASNFHLLHLMENLADAIENGTRDQQSDALVNELNNHFEKCQQLLSSISESLDTKAMTV 137
           SLAS++HLLHL+ENLA+ IE+GT DQQSDAL+NEL+NHFEKCQQLL+SIS+S+ TKAMTV
Sbjct: 100 SLASHYHLLHLVENLAEVIEHGTPDQQSDALINELSNHFEKCQQLLNSISDSISTKAMTV 159

Query: 138 EGQRRKLEESEQLLNQRKSVMLMLR 162
           EGQ++KLEESEQLLNQR+ ++   R
Sbjct: 160 EGQKKKLEESEQLLNQRRDLIANYR 184

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458229|ref|XP_004146850.1| PREDICTED: mediator of RNA polymerase II transcription subunit 9-like [Cucumis sativus]

 Score =  128 bits (322), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 62/81 (76%), Positives = 74/81 (91%)

Query: 78  SLASNFHLLHLMENLADAIENGTRDQQSDALVNELNNHFEKCQQLLSSISESLDTKAMTV 137
           SLAS+FHLLHL+E LADAIENGTRDQQSDALVN+LNNHFEKC+QLL+SIS SL +KAMT 
Sbjct: 38  SLASHFHLLHLVEKLADAIENGTRDQQSDALVNDLNNHFEKCRQLLNSISGSLSSKAMTK 97

Query: 138 EGQRRKLEESEQLLNQRKSVM 158
           EGQ++KLEE EQLL+ R+ ++
Sbjct: 98  EGQKKKLEEHEQLLSHRRELI 118

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22330255|ref|NP_175905.2| uncharacterized protein [Arabidopsis thaliana] gi|75158655|sp|Q8RWA2.1|MED9_ARATH RecName: Full=Mediator of RNA polymerase II transcription subunit 9 gi|20260684|gb|AAM13240.1| unknown protein [Arabidopsis thaliana] gi|30023712|gb|AAP13389.1| At1g55080 [Arabidopsis thaliana] gi|110742509|dbj|BAE99172.1| hypothetical protein [Arabidopsis thaliana] gi|332195062|gb|AEE33183.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 61/89 (68%), Positives = 75/89 (84%)

Query: 74  QHHQSLASNFHLLHLMENLADAIENGTRDQQSDALVNELNNHFEKCQQLLSSISESLDTK 133
           Q HQSLAS+FHL  ++E LAD IENGTRDQ SDALVNELN+HF+KCQQLL+SIS SL +K
Sbjct: 145 QQHQSLASHFHLYPMVEKLADVIENGTRDQNSDALVNELNSHFDKCQQLLNSISGSLGSK 204

Query: 134 AMTVEGQRRKLEESEQLLNQRKSVMLMLR 162
            MTV+GQ+R +EESEQLL QR+ +++  R
Sbjct: 205 TMTVDGQKRNVEESEQLLQQRRDLIVEYR 233

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723835|ref|NP_001236013.1| uncharacterized protein LOC100305737 [Glycine max] gi|255626477|gb|ACU13583.1| unknown [Glycine max]

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 93/160 (58%), Positives = 112/160 (70%), Gaps = 6/160 (3%)

Query: 1   MDPFSGSG-SWNMMPSIPSHNSSPAASNQD-NLFLSPQHQQQFYQQPTQFPQQQFQQQGR 58
           MD +  SG SW M   IP+HNS  + SNQD NLFL  Q   Q          Q   QQ +
Sbjct: 1   MDHYGSSGGSWTM---IPTHNSQ-SQSNQDPNLFLQQQQFLQSQPFQQALAPQSPFQQQQ 56

Query: 59  TPQQQQQPQQQQQQNQHHQSLASNFHLLHLMENLADAIENGTRDQQSDALVNELNNHFEK 118
             +  QQ QQQQQ    HQSLAS++HLLHL+ENLA+ IE+GT DQ SDAL+NE +NHFEK
Sbjct: 57  QQRLLQQQQQQQQPQNLHQSLASHYHLLHLVENLAEVIEHGTPDQPSDALINESSNHFEK 116

Query: 119 CQQLLSSISESLDTKAMTVEGQRRKLEESEQLLNQRKSVM 158
           C QLL+SIS S+ TKAMTVEGQ++KLEESEQLLNQR+ ++
Sbjct: 117 CLQLLNSISGSISTKAMTVEGQKKKLEESEQLLNQRRDLI 156

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|12321581|gb|AAG50844.1|AC073944_11 hypothetical protein [Arabidopsis thaliana]

 Score =  124 bits (312), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 62/90 (68%), Positives = 74/90 (82%)

Query: 74  QHHQSLASNFHLLHLMENLADAIENGTRDQQSDALVNELNNHFEKCQQLLSSISESLDTK 133
           Q HQSLAS+FHL  ++E LAD IENGTRDQ SDALVNELN+HF+KCQQLL+SIS SL +K
Sbjct: 145 QQHQSLASHFHLYPMVEKLADVIENGTRDQNSDALVNELNSHFDKCQQLLNSISGSLGSK 204

Query: 134 AMTVEGQRRKLEESEQLLNQRKSVMLMLRV 163
            MTV+GQ+R +EESEQLL QR    L+ R+
Sbjct: 205 TMTVDGQKRNVEESEQLLQQRSIGNLLKRL 234

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357513635|ref|XP_003627106.1| hypothetical protein MTR_8g017180 [Medicago truncatula] gi|355521128|gb|AET01582.1| hypothetical protein MTR_8g017180 [Medicago truncatula] gi|388506434|gb|AFK41283.1| unknown [Medicago truncatula]

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 59/81 (72%), Positives = 74/81 (91%)

Query: 78  SLASNFHLLHLMENLADAIENGTRDQQSDALVNELNNHFEKCQQLLSSISESLDTKAMTV 137
           SLAS+FHLL+L+ENLA+ +E+G  DQQSDAL+ EL+NHFEKCQQLL+SIS S+ TKAMTV
Sbjct: 101 SLASHFHLLNLVENLAEVVEHGNPDQQSDALITELSNHFEKCQQLLNSISASISTKAMTV 160

Query: 138 EGQRRKLEESEQLLNQRKSVM 158
           EGQ++KLEESEQLLNQR+ ++
Sbjct: 161 EGQKKKLEESEQLLNQRRDLI 181

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242074772|ref|XP_002447322.1| hypothetical protein SORBIDRAFT_06g032950 [Sorghum bicolor] gi|241938505|gb|EES11650.1| hypothetical protein SORBIDRAFT_06g032950 [Sorghum bicolor]

 Score =  115 bits (289), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 60/103 (58%), Positives = 75/103 (72%), Gaps = 5/103 (4%)

Query: 65  QPQQQ-----QQQNQHHQSLASNFHLLHLMENLADAIENGTRDQQSDALVNELNNHFEKC 119
           QPQQ      Q Q  HH SLAS+FHLLHL+  LADAI  GTRDQ SDALV EL + F +C
Sbjct: 60  QPQQALMSPPQPQQHHHASLASHFHLLHLVTRLADAIGTGTRDQNSDALVEELTSQFARC 119

Query: 120 QQLLSSISESLDTKAMTVEGQRRKLEESEQLLNQRKSVMLMLR 162
           QQLL+SIS ++ +K+ TVEGQR+ L+E+ QLL+QRK ++   R
Sbjct: 120 QQLLNSISGTISSKSTTVEGQRQSLDETRQLLDQRKELITKYR 162

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388496346|gb|AFK36239.1| unknown [Lotus japonicus]

 Score =  115 bits (287), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 54/79 (68%), Positives = 70/79 (88%)

Query: 80  ASNFHLLHLMENLADAIENGTRDQQSDALVNELNNHFEKCQQLLSSISESLDTKAMTVEG 139
           AS++ LLHL+ENLA+ +++GT DQQS+AL+ EL N FEKCQQLL+SIS S+ TKAMTVEG
Sbjct: 97  ASHYQLLHLVENLAEVVDHGTPDQQSEALITELTNRFEKCQQLLNSISGSISTKAMTVEG 156

Query: 140 QRRKLEESEQLLNQRKSVM 158
           Q++KLEESEQLLNQR+ ++
Sbjct: 157 QKKKLEESEQLLNQRRDLI 175

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	167
TAIR|locus:2205662	244	MED9 "AT1G55080" [Arabidopsis	0.508	0.348	0.682	1.1e-31
TAIR|locus:2013768	89	AT1G29580 "AT1G29580" [Arabido	0.353	0.662	0.419	8.1e-05

TAIR|locus:2205662 MED9 "AT1G55080" [Arabidopsis thaliana (taxid:3702)]

 Score = 296 (109.3 bits), Expect = 1.1e-31, Sum P(2) = 1.1e-31
 Identities = 58/85 (68%), Positives = 72/85 (84%)

Query:    78 SLASNFHLLHLMENLADAIENGTRDQQSDALVNELNNHFEKCQQLLSSISESLDTKAMTV 137
             SLAS+FHL  ++E LAD IENGTRDQ SDALVNELN+HF+KCQQLL+SIS SL +K MTV
Sbjct:   149 SLASHFHLYPMVEKLADVIENGTRDQNSDALVNELNSHFDKCQQLLNSISGSLGSKTMTV 208

Query:   138 EGQRRKLEESEQLLNQRKSVMLMLR 162
             +GQ+R +EESEQLL QR+ +++  R
Sbjct:   209 DGQKRNVEESEQLLQQRRDLIVEYR 233

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016592 "mediator complex" evidence=IDA

TAIR|locus:2013768 AT1G29580 "AT1G29580" [Arabidopsis thaliana (taxid:3702)]

 Score = 94 (38.1 bits), Expect = 8.1e-05, P = 8.1e-05
 Identities = 26/62 (41%), Positives = 36/62 (58%)

Query:    78 SLASNFHLLHLMENLADAIENGTRDQQSDAL-VNELNNHFEKCQQLLSSISESLDTKAMT 136
             +LAS  HL  L+ENL D  E+  RDQ SDAL V+    + E+ +QLL    E ++    +
Sbjct:    23 TLAS--HLYPLVENLKDVTESRARDQNSDALYVDVQKQNLEESEQLLQQRMELIEEYKKS 80

Query:   137 VE 138
             VE
Sbjct:    81 VE 82


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.314   0.126   0.351    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      167       124   0.00091  102 3  11 23  0.39    31
                                                     29  0.39    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  567 (60 KB)
  Total size of DFA:  125 KB (2080 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.47u 0.13s 15.60t   Elapsed:  00:00:00
  Total cpu time:  15.47u 0.13s 15.60t   Elapsed:  00:00:00
  Start:  Fri May 10 08:38:32 2013   End:  Fri May 10 08:38:32 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	167
pfam13779	820	pfam13779, DUF4175, Domain of unknown function (DU	1e-04
pfam13779	820	pfam13779, DUF4175, Domain of unknown function (DU	2e-04
PRK10263	1355	PRK10263, PRK10263, DNA translocase FtsK; Provisio	6e-04
pfam13779	820	pfam13779, DUF4175, Domain of unknown function (DU	0.001
pfam13779	820	pfam13779, DUF4175, Domain of unknown function (DU	0.003

>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175)

 Score = 41.4 bits (98), Expect = 1e-04
 Identities = 18/45 (40%), Positives = 21/45 (46%)

Query: 36  QHQQQFYQQPTQFPQQQFQQQGRTPQQQQQPQQQQQQNQHHQSLA 80
           + +QQ  Q      Q Q  QQG+  Q QQQ QQ Q       SLA
Sbjct: 619 RGEQQGQQGQGGQGQGQPGQQGQQGQGQQQGQQGQGGQGGQGSLA 663

Length = 820

>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175)

 Score = 40.7 bits (96), Expect = 2e-04
 Identities = 18/48 (37%), Positives = 19/48 (39%), Gaps = 2/48 (4%)

Query: 36  QHQQQFYQQ--PTQFPQQQFQQQGRTPQQQQQPQQQQQQNQHHQSLAS 81
             Q+QF  Q    Q  Q Q  Q    P QQ Q  Q QQQ Q  Q    
Sbjct: 610 DLQEQFNAQRGEQQGQQGQGGQGQGQPGQQGQQGQGQQQGQQGQGGQG 657

Length = 820

>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional

 Score = 39.3 bits (91), Expect = 6e-04
 Identities = 24/64 (37%), Positives = 26/64 (40%), Gaps = 11/64 (17%)

Query: 23  PAASNQDNLFLSPQHQQQFYQQPTQ--FPQQQFQQ---------QGRTPQQQQQPQQQQQ 71
            A   Q      P   Q  YQQP Q   PQ Q+QQ         Q + PQQ   PQ Q Q
Sbjct: 759 VAPQQQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQ 818

Query: 72  QNQH 75
           Q Q 
Sbjct: 819 QPQQ 822

Length = 1355

>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175)

 Score = 38.3 bits (90), Expect = 0.001
 Identities = 12/43 (27%), Positives = 16/43 (37%)

Query: 36  QHQQQFYQQPTQFPQQQFQQQGRTPQQQQQPQQQQQQNQHHQS 78
           + QQ    +  +  Q+QF  Q    Q QQ    Q Q     Q 
Sbjct: 598 REQQGLSDETFRDLQEQFNAQRGEQQGQQGQGGQGQGQPGQQG 640

Length = 820

>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175)

 Score = 37.2 bits (87), Expect = 0.003
 Identities = 14/43 (32%), Positives = 15/43 (34%)

Query: 32  FLSPQHQQQFYQQPTQFPQQQFQQQGRTPQQQQQPQQQQQQNQ 74
            L  Q   Q  +Q  Q  Q    Q     Q QQ   QQQ Q  
Sbjct: 610 DLQEQFNAQRGEQQGQQGQGGQGQGQPGQQGQQGQGQQQGQQG 652

Length = 820

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	167
PF07544	83	Med9: RNA polymerase II transcription mediator com	99.56
PF11221	144	Med21: Subunit 21 of Mediator complex; InterPro: I	90.25
PF02520	113	DUF148: Domain of unknown function DUF148; InterPr	82.27
PF03127	100	GAT: GAT domain; InterPro: IPR004152 The GAT domai	81.01

>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes

Probab=99.56  E-value=1.2e-14  Score=104.29  Aligned_cols=79  Identities=16%  Similarity=0.316  Sum_probs=70.6

Q ss_pred             hHHHHHHHHHHHHhcC-Ccc-cchHHHHHHHHHHHHHHHHHHhhhhccccccccCHHHHHHhHHHHHHHHHHHHHHHHHH
Q 031033           84 HLLHLMENLADAIENG-TRD-QQSDALVNELNNHFEKCQQLLSSISESLDTKAMTVEGQRRKLEESEQLLNQRKSVMLML  161 (167)
Q Consensus        84 hllpLVe~Lad~ie~g-trD-q~sDaLvnEL~skFqkcqQLLnSisgsi~~k~~tvE~Qkq~Lee~rqql~qRreLl~KY  161 (167)
                      .|||.|.+++.++.++ ..| ...+.-+.+|+.||++|+.+|.+++|+    ..|+|.|...|+++|+.+..++++|.||
T Consensus         3 e~lP~i~~~l~~~~~d~~~~~kd~~~~~~~lk~Klq~ar~~i~~lpgi----~~s~eeq~~~i~~Le~~i~~k~~~L~~~   78 (83)
T PF07544_consen    3 EFLPLIFDILHQISKDPPLSSKDLDTATGSLKHKLQKARAAIRELPGI----DRSVEEQEEEIEELEEQIRKKREVLQKF   78 (83)
T ss_pred             cccchHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCc----cCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5899999999999884 332 223455999999999999999999998    6899999999999999999999999999


Q ss_pred             Hhhhc
Q 031033          162 RVFCF  166 (167)
Q Consensus       162 KslC~  166 (167)
                      |+.||
T Consensus        79 ~~~~~   83 (83)
T PF07544_consen   79 KERVM   83 (83)
T ss_pred             HHhhC
Confidence            99997

Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex

>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes

Probab=90.25  E-value=1.7  Score=33.84  Aligned_cols=45  Identities=16%  Similarity=0.245  Sum_probs=34.5

Q ss_pred             chHHHHHHHHHHHHHHHHHHhhhhccccccccCHHHHHHhHHHHHHHHH
Q 031033          104 QSDALVNELNNHFEKCQQLLSSISESLDTKAMTVEGQRRKLEESEQLLN  152 (167)
Q Consensus       104 ~sDaLvnEL~skFqkcqQLLnSisgsi~~k~~tvE~Qkq~Lee~rqql~  152 (167)
                      +.+.|.+-|..++....-||.++||+    ..|+|.|.+.|.+|++.++
T Consensus        70 ~~~elA~dIi~kakqIe~LIdsLPg~----~~see~Q~~~i~~L~~E~~  114 (144)
T PF11221_consen   70 NIKELATDIIRKAKQIEYLIDSLPGI----EVSEEEQLKRIKELEEENE  114 (144)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSTTS----SS-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCC----CCCHHHHHHHHHHHHHHHH
Confidence            34556666777888889999999999    4699999999887766543

Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.

>PF02520 DUF148: Domain of unknown function DUF148; InterPro: IPR003677 This entry represents the domain DUF148, which has no known function

Probab=82.27  E-value=4.6  Score=29.60  Aligned_cols=37  Identities=16%  Similarity=0.281  Sum_probs=30.7

Q ss_pred             HHHHhhhhccccccccCHHHHHHhHHHHHHHHHHHHH
Q 031033          120 QQLLSSISESLDTKAMTVEGQRRKLEESEQLLNQRKS  156 (167)
Q Consensus       120 qQLLnSisgsi~~k~~tvE~Qkq~Lee~rqql~qRre  156 (167)
                      -.+...+++|++.+++|..+++.+++++++.+....+
T Consensus        64 ~~a~~~l~~I~~n~~lT~~q~~~~I~~l~~~~~~e~~  100 (113)
T PF02520_consen   64 SSAFAKLSAILDNKSLTRQQQQEAIDALRKQYPEEVD  100 (113)
T ss_pred             HHHHHHHHHHHcCcccCHHHHHHHHHHHHHHCCHHHH
Confidence            3667777888889999999999999999988766533

>PF03127 GAT: GAT domain; InterPro: IPR004152 The GAT domain is responsible for binding of GGA proteins to several members of the ARF family including ARF1 [] and ARF3

Probab=81.01  E-value=14  Score=26.67  Aligned_cols=72  Identities=15%  Similarity=0.220  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHhhhhccccccccCHHHHHHhHHHHHHHHHHHHHHHHHHHhhh
Q 031033           86 LHLMENLADAIENGTRDQQSDALVNELNNHFEKCQQLLSSISESLDTKAMTVEGQRRKLEESEQLLNQRKSVMLMLRVFC  165 (167)
Q Consensus        86 lpLVe~Lad~ie~gtrDq~sDaLvnEL~skFqkcqQLLnSisgsi~~k~~tvE~Qkq~Lee~rqql~qRreLl~KYKslC  165 (167)
                      .-|..++.+.+..+.......+++.||.+.-.++|.-|-.+-..     ...|.   -|.++=+.-+.=..+|.+|..++
T Consensus        20 ~~lL~emL~~~~~~~~~~~~~el~~eL~~~ck~~r~~i~~li~~-----~~dee---~l~~lL~~ND~L~~~l~~Y~~l~   91 (100)
T PF03127_consen   20 AKLLNEMLDNYDPGEESSSDNELIQELYESCKSMRPRIQRLIEE-----VEDEE---LLGELLQANDELNQALERYDRLV   91 (100)
T ss_dssp             HHHHHHHHHHTTTTTSTHHHHHHHHHHHHHHHHHHHHHHHHHHT-----STTCH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHHHHHHHhh-----cCcHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677787888878777665578888866666666555544433     22222   67777777778888999999876

The GAT domain stabilises membrane bound ARF1 in its GTP bound state, by interfering with GAP proteins [].; GO: 0006886 intracellular protein transport, 0005622 intracellular; PDB: 1YD8_H 1WR6_C 1WRD_A 1O3X_A 1J2J_B 1NWM_X 1X79_A 1OXZ_A 1NAF_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	167
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	93.12
1ykh_B	132	RNA polymerase II holoenzyme component SRB7; gene	90.21
1yke_B	151	RNA polymerase II holoenzyme component SRB7; gene	90.13

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=93.12  E-value=0.028  Score=50.59  Aligned_cols=10  Identities=30%  Similarity=0.591  Sum_probs=0.0

Q ss_pred             CcceecCCCC
Q 031033            8 GSWNMMPSIP   17 (167)
Q Consensus         8 GSw~miP~~p   17 (167)
                      .+..|+|..+
T Consensus         9 ~~~~~~~~~~   18 (727)
T 4b8c_D            9 NSIGMVPTVG   18 (727)
T ss_dssp             ----------
T ss_pred             cccCCCcccC
Confidence            3455666333

>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1

Probab=90.21  E-value=1.2  Score=33.65  Aligned_cols=43  Identities=21%  Similarity=0.301  Sum_probs=33.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhccccccccCHHHHHHhHHHHHHHHH
Q 031033          106 DALVNELNNHFEKCQQLLSSISESLDTKAMTVEGQRRKLEESEQLLN  152 (167)
Q Consensus       106 DaLvnEL~skFqkcqQLLnSisgsi~~k~~tvE~Qkq~Lee~rqql~  152 (167)
                      +.+.+-|..++.....||.++||+    ..|+|.|-+.|.++++.+.
T Consensus        60 ~ela~dli~k~kqIe~LIdsLP~~----~~see~Q~~ri~~L~~E~~  102 (132)
T 1ykh_B           60 DELSTDIILKTRQINKLIDSLPGV----DVSAEEQLRKIDMLQKKLV  102 (132)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSTTT----TCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCC----CCCHHHHHHHHHHHHHHHH
Confidence            345555667788889999999999    4699999999887765543

>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1

Probab=90.13  E-value=1.1  Score=34.71  Aligned_cols=43  Identities=21%  Similarity=0.301  Sum_probs=33.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhccccccccCHHHHHHhHHHHHHHHH
Q 031033          106 DALVNELNNHFEKCQQLLSSISESLDTKAMTVEGQRRKLEESEQLLN  152 (167)
Q Consensus       106 DaLvnEL~skFqkcqQLLnSisgsi~~k~~tvE~Qkq~Lee~rqql~  152 (167)
                      +.+.+.|..++....-||.++||+    ..|+|.|-+.|.++++.+.
T Consensus        60 ~ela~dli~kakqIe~LIdsLPg~----~~seeeQ~~ri~~Le~E~~  102 (151)
T 1yke_B           60 DELSTDIILKTRQINKLIDSLPGV----DVSAEEQLRKIDMLQKKLV  102 (151)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTS----SSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCC----CCCHHHHHHHHHHHHHHHH
Confidence            445566677788899999999999    4699999999887765543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	167
d1ykhb1	129	RNA polymerase II holoenzyme component SRB7 (MED21	88.21

>d1ykhb1 a.252.1.1 (B:2-130) RNA polymerase II holoenzyme component SRB7 (MED21) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: Mediator hinge subcomplex-like
superfamily: Mediator hinge subcomplex-like
family: CSE2-like
domain: RNA polymerase II holoenzyme component SRB7 (MED21)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.21  E-value=0.95  Score=32.46  Aligned_cols=43  Identities=21%  Similarity=0.301  Sum_probs=33.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhccccccccCHHHHHHhHHHHHHHHH
Q 031033          106 DALVNELNNHFEKCQQLLSSISESLDTKAMTVEGQRRKLEESEQLLN  152 (167)
Q Consensus       106 DaLvnEL~skFqkcqQLLnSisgsi~~k~~tvE~Qkq~Lee~rqql~  152 (167)
                      +.+-.-|.-++.....|++|+||+    ..|+|.|-+.|.++++.++
T Consensus        59 ~elA~dii~kakqId~LI~sLP~~----~~see~Q~~~i~~Le~E~~  101 (129)
T d1ykhb1          59 DELSTDIILKTRQINKLIDSLPGV----DVSAEEQLRKIDMLQKKLV  101 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSTTT----TCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHhCCCC----CCCHHHHHHHHHHHHHHHH
Confidence            335555666677788899999999    5799999999988876643