Citrus Sinensis ID: 031039

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------
MVQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFAGDGSRQPTELELEQAFHQGKHIAGIAKKLKGSA
cccccccccHHHHHHcccccccccccccHHHHHHccEEEEcccccccccHHHHHHHHHHcccHHHHccccccccEEEEEcccccccHHHHHHHHHHHHHHcccEEEcccccccccccccccccccccccccEEcccccccccHHHHHHHHHHHHHHHHHHHHHHccc
cccccccccHHHHHHcccccccccccccHHHHHHccEEEEccccccccHHHHHHHHHHHHccHHHccccccccEEEEEEcccccccHHHHHHHHHHHHHHccEEEEEccccccccccccccccccccccccEEcccccccccHHHHHHHHHHHHHHHHHHHHHHccc
mvqvpetlpeevlgkmsappksdvpiitpnelaeadgfvfgfptrFGMMAAQFKAFLDATgglwrtqqlagkpagmfystgsqgggqetTALTAITQLVHHGmifvpigytfgagmfemekvkggspygagtfagdgsrqpTELELEQAFHQGKHIAGIAKKLKGSA
mvqvpetlpeevlgkmsappksDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFAGDGSRQPTELELEQAFHQGKHIAGIAKKLKGSA
MVQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYstgsqgggqettALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFAGDGSRQPTELELEQAFHQGKHIAGIAKKLKGSA
*************************IITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVK********************************************
MVQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFA******P***ELEQAFHQGKHIAGIAKKLKG**
MVQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFAGDGSRQPTELELEQAFHQGKHIAGIAKKLKGSA
MVQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFAGDGSRQPTELELEQAFHQGKHIAGIAKKLKG**
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MVQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFAGDGSRQPTELELEQAFHQGKHIAGIAKKLKGSA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query167 2.2.26 [Sep-21-2011]
C4XGC2203 Flavoprotein WrbA OS=Desu yes no 0.964 0.793 0.538 5e-42
P42058204 Minor allergen Alt a 7 OS N/A no 0.922 0.754 0.575 1e-40
Q0A961199 Flavoprotein WrbA OS=Alka yes no 0.964 0.809 0.530 2e-40
P25349247 Flavoprotein-like protein yes no 0.976 0.659 0.536 3e-40
B9M4V3205 Flavoprotein WrbA OS=Geob yes no 0.958 0.780 0.530 1e-39
Q8Z7N9198 Flavoprotein WrbA OS=Salm N/A no 0.958 0.808 0.512 1e-39
P30821202 P25 protein OS=Schizosacc yes no 0.916 0.757 0.541 2e-39
A9VY95199 Flavoprotein WrbA OS=Meth yes no 0.982 0.824 0.524 3e-39
B7KQ28199 Flavoprotein WrbA OS=Meth yes no 0.982 0.824 0.524 3e-39
A5G020199 Flavoprotein WrbA OS=Acid yes no 0.970 0.814 0.518 6e-39
>sp|C4XGC2|WRBA_DESMR Flavoprotein WrbA OS=Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1) GN=wrbA PE=3 SV=1 Back     alignment and function desciption
 Score =  170 bits (430), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 90/167 (53%), Positives = 112/167 (67%), Gaps = 6/167 (3%)

Query: 3   QVPETLPEEVLGKMSAPPK----SDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLD 58
           +VPETL EEV+GKM A       S VP  T  EL +AD  VFG PTRFG M  Q + FLD
Sbjct: 37  RVPETLSEEVIGKMGATEAQKALSHVPACTLEELEDADAIVFGTPTRFGNMCGQMRQFLD 96

Query: 59  ATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGYTFGAGMFE 118
           ATG +W    L GKP G+F ST +Q GGQETT ++ I  L+HHGMI V + Y+F AG   
Sbjct: 97  ATGQIWMRGGLVGKPGGVFCSTATQHGGQETTLMSFIQTLLHHGMIVVGLPYSF-AGQMR 155

Query: 119 MEKVKGGSPYGAGTFA-GDGSRQPTELELEQAFHQGKHIAGIAKKLK 164
           +++V GGSPYGA T A GDGSR P+E EL+ A  QG+HIA + ++L+
Sbjct: 156 LDEVTGGSPYGATTIAGGDGSRMPSENELDAARFQGRHIADVTRRLR 202

Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1) (taxid: 573370)
>sp|P42058|ALTA7_ALTAL Minor allergen Alt a 7 OS=Alternaria alternata GN=ALTA7 PE=1 SV=1 Back     alignment and function description
>sp|Q0A961|WRBA_ALHEH Flavoprotein WrbA OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=wrbA PE=3 SV=1 Back     alignment and function description
>sp|P25349|YCP4_YEAST Flavoprotein-like protein YCP4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YCP4 PE=1 SV=1 Back     alignment and function description
>sp|B9M4V3|WRBA_GEOSF Flavoprotein WrbA OS=Geobacter sp. (strain FRC-32) GN=wrbA PE=3 SV=1 Back     alignment and function description
>sp|Q8Z7N9|WRBA_SALTI Flavoprotein WrbA OS=Salmonella typhi GN=wrbA PE=3 SV=3 Back     alignment and function description
>sp|P30821|P25_SCHPO P25 protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=obr1 PE=1 SV=1 Back     alignment and function description
>sp|A9VY95|WRBA_METEP Flavoprotein WrbA OS=Methylobacterium extorquens (strain PA1) GN=wrbA PE=3 SV=1 Back     alignment and function description
>sp|B7KQ28|WRBA_METC4 Flavoprotein WrbA OS=Methylobacterium chloromethanicum (strain CM4 / NCIMB 13688) GN=wrbA PE=3 SV=1 Back     alignment and function description
>sp|A5G020|WRBA_ACICJ Flavoprotein WrbA OS=Acidiphilium cryptum (strain JF-5) GN=wrbA PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query167
255587934203 Minor allergen Alt a, putative [Ricinus 1.0 0.822 0.940 3e-86
224115142203 predicted protein [Populus trichocarpa] 1.0 0.822 0.940 4e-85
224124152203 predicted protein [Populus trichocarpa] 1.0 0.822 0.940 5e-85
225461209203 PREDICTED: flavoprotein wrbA isoform 1 [ 1.0 0.822 0.934 8e-85
118485421203 unknown [Populus trichocarpa] 1.0 0.822 0.934 1e-84
359493919192 PREDICTED: flavoprotein wrbA isoform 2 [ 1.0 0.869 0.934 2e-84
297799264205 quinone reductase family protein [Arabid 1.0 0.814 0.928 3e-84
37724581166 putative quinone reductase, partial [Vit 0.988 0.993 0.945 5e-84
351720697203 uncharacterized protein LOC100499870 [Gl 1.0 0.822 0.904 1e-83
3269288211 putative protein [Arabidopsis thaliana] 1.0 0.791 0.916 3e-83
>gi|255587934|ref|XP_002534445.1| Minor allergen Alt a, putative [Ricinus communis] gi|223525276|gb|EEF27937.1| Minor allergen Alt a, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  322 bits (825), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 157/167 (94%), Positives = 164/167 (98%)

Query: 1   MVQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDAT 60
           + QVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMM+AQFKAFLDAT
Sbjct: 37  LWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMSAQFKAFLDAT 96

Query: 61  GGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGYTFGAGMFEME 120
           GGLWRTQQLAGKPAG+FYSTGSQGGGQETTALTAITQLVHHGM+FVPIGYTFGAGMFEME
Sbjct: 97  GGLWRTQQLAGKPAGIFYSTGSQGGGQETTALTAITQLVHHGMLFVPIGYTFGAGMFEME 156

Query: 121 KVKGGSPYGAGTFAGDGSRQPTELELEQAFHQGKHIAGIAKKLKGSA 167
           KVKGGSPYGAGT+AGDGSRQP+ELELEQAFHQGK+ AGI KKLKGSA
Sbjct: 157 KVKGGSPYGAGTYAGDGSRQPSELELEQAFHQGKYFAGITKKLKGSA 203

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224115142|ref|XP_002316953.1| predicted protein [Populus trichocarpa] gi|222860018|gb|EEE97565.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224124152|ref|XP_002319258.1| predicted protein [Populus trichocarpa] gi|222857634|gb|EEE95181.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225461209|ref|XP_002283286.1| PREDICTED: flavoprotein wrbA isoform 1 [Vitis vinifera] gi|147788048|emb|CAN78237.1| hypothetical protein VITISV_016391 [Vitis vinifera] gi|302143167|emb|CBI20462.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|118485421|gb|ABK94567.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359493919|ref|XP_003634692.1| PREDICTED: flavoprotein wrbA isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297799264|ref|XP_002867516.1| quinone reductase family protein [Arabidopsis lyrata subsp. lyrata] gi|297313352|gb|EFH43775.1| quinone reductase family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|37724581|gb|AAO12869.1| putative quinone reductase, partial [Vitis vinifera] Back     alignment and taxonomy information
>gi|351720697|ref|NP_001237185.1| uncharacterized protein LOC100499870 [Glycine max] gi|255627281|gb|ACU13985.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|3269288|emb|CAA19721.1| putative protein [Arabidopsis thaliana] gi|7269580|emb|CAB79582.1| putative protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query167
TAIR|locus:2131749205 AT4G27270 [Arabidopsis thalian 0.988 0.804 0.854 7.5e-73
TAIR|locus:2178868207 AT5G58800 [Arabidopsis thalian 0.970 0.782 0.631 3.8e-53
TAIR|locus:2115405273 AT4G36750 [Arabidopsis thalian 0.976 0.597 0.615 5.1e-51
CGD|CAL0003649199 PST3 [Candida albicans (taxid: 0.910 0.763 0.545 1.1e-37
CGD|CAL0003651288 YCP4 [Candida albicans (taxid: 0.982 0.569 0.523 3e-37
ASPGD|ASPL0000059021204 AN0297 [Emericella nidulans (t 0.922 0.754 0.509 1.7e-36
CGD|CAL0006260198 PST1 [Candida albicans (taxid: 0.904 0.762 0.496 2.2e-34
UNIPROTKB|Q59Z58198 CQR1 "Potential reductase, fla 0.904 0.762 0.496 2.2e-34
SGD|S000000597247 YCP4 "Protein of unknown funct 0.964 0.651 0.487 9.5e-34
UNIPROTKB|P0A8G6198 wrbA [Escherichia coli K-12 (t 0.958 0.808 0.457 1.2e-33
TAIR|locus:2131749 AT4G27270 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 736 (264.1 bits), Expect = 7.5e-73, P = 7.5e-73
 Identities = 141/165 (85%), Positives = 146/165 (88%)

Query:     3 QVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGG 62
             QVPETL E+VL KMSAPPKSD PIITPNELAEADGF+FGFPTRFGMMAAQFKAFLDATGG
Sbjct:    39 QVPETLQEDVLSKMSAPPKSDAPIITPNELAEADGFIFGFPTRFGMMAAQFKAFLDATGG 98

Query:    63 LWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYTFGAGMFEMEKV 122
             LWRTQQLAGKPAG+FY            ALTAITQLVHHGMIFVPIGYTFGAGMFEME V
Sbjct:    99 LWRTQQLAGKPAGIFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGYTFGAGMFEMENV 158

Query:   123 KGGSPYGAGTFAGDGSRQPTELELEQAFHQGKHIAGIAKKLKGSA 167
             KGGSPYGAGTFAGDGSRQPTELEL QAFHQGK+IA I+KKLKG A
Sbjct:   159 KGGSPYGAGTFAGDGSRQPTELELGQAFHQGKYIAAISKKLKGPA 203
GO:0005737 "cytoplasm" evidence=ISM
GO:0010181 "FMN binding" evidence=IEA
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA
GO:0005886 "plasma membrane" evidence=IDA
GO:0009506 "plasmodesma" evidence=IDA
TAIR|locus:2178868 AT5G58800 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2115405 AT4G36750 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
CGD|CAL0003649 PST3 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
CGD|CAL0003651 YCP4 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
ASPGD|ASPL0000059021 AN0297 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
CGD|CAL0006260 PST1 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|Q59Z58 CQR1 "Potential reductase, flavodoxin" [Candida albicans SC5314 (taxid:237561)] Back     alignment and assigned GO terms
SGD|S000000597 YCP4 "Protein of unknown function" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
UNIPROTKB|P0A8G6 wrbA [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
B7N3F9WRBA_ECOLUNo assigned EC number0.50600.95800.8080yesno
A9N6R4WRBA_SALPBNo assigned EC number0.50600.95800.8080yesno
Q1CHD6WRBA_YERPNNo assigned EC number0.52720.95800.8040yesno
Q1C8L9WRBA_YERPANo assigned EC number0.52720.95800.8040yesno
Q0TJ63WRBA_ECOL5No assigned EC number0.50600.95800.8080yesno
Q0T630WRBA_SHIF8No assigned EC number0.50600.95800.8080yesno
B1ZJX9WRBA_METPBNo assigned EC number0.52430.97000.8140yesno
A9VY95WRBA_METEPNo assigned EC number0.52400.98200.8241yesno
Q8ZF61WRBA_YERPENo assigned EC number0.52720.95800.8040yesno
A1A9Q9WRBA_ECOK1No assigned EC number0.50600.95800.8080yesno
B2K198WRBA_YERPBNo assigned EC number0.52720.95800.8040yesno
B7M8Y8WRBA_ECO8ANo assigned EC number0.50600.95800.8080yesno
B7KQ28WRBA_METC4No assigned EC number0.52400.98200.8241yesno
Q1RDL3WRBA_ECOUTNo assigned EC number0.50600.95800.8080yesno
A8GCS6WRBA_SERP5No assigned EC number0.50900.97000.8140yesno
B4TSN0WRBA_SALSVNo assigned EC number0.50600.95800.8080yesno
C4ZQD2WRBA_ECOBWNo assigned EC number0.50600.95800.8080yesno
B1X9C5WRBA_ECODHNo assigned EC number0.50600.95800.8080yesno
Q39XL1WRBA_GEOMGNo assigned EC number0.52940.98200.8078yesno
A9MH45WRBA_SALARNo assigned EC number0.50600.95800.8080N/Ano
A5G020WRBA_ACICJNo assigned EC number0.51820.97000.8140yesno
B6I980WRBA_ECOSENo assigned EC number0.50600.95800.8080yesno
A7FJ02WRBA_YERP3No assigned EC number0.52720.95800.8040yesno
B7NLC1WRBA_ECO7INo assigned EC number0.50600.95800.8080yesno
B5F202WRBA_SALA4No assigned EC number0.50600.95800.8080yesno
Q0A961WRBA_ALHEHNo assigned EC number0.53040.96400.8090yesno
Q8ZQ40WRBA_SALTYNo assigned EC number0.50600.95800.8080yesno
A4TK49WRBA_YERPPNo assigned EC number0.52720.95800.8040yesno
B5R6H0WRBA_SALG2No assigned EC number0.50600.95800.8080yesno
P0A8G6WRBA_ECOLINo assigned EC number0.50600.95800.8080N/Ano
P0A8G7WRBA_ECOL6No assigned EC number0.50600.95800.8080yesno
A7ZYV7WRBA_ECOHSNo assigned EC number0.50600.95800.8080yesno
P30821P25_SCHPONo assigned EC number0.54140.91610.7574yesno
B1IV93WRBA_ECOLCNo assigned EC number0.50600.95800.8080yesno
B9M4V3WRBA_GEOSFNo assigned EC number0.53010.95800.7804yesno
P0A8G8WRBA_SHIFLNo assigned EC number0.50600.95800.8080yesno
C0Q886WRBA_SALPCNo assigned EC number0.50600.95800.8080yesno
B1LJ00WRBA_ECOSMNo assigned EC number0.50600.95800.8080yesno
P25349YCP4_YEASTNo assigned EC number0.53610.97600.6599yesno
B5R056WRBA_SALEPNo assigned EC number0.50600.95800.8080yesno
C4XGC2WRBA_DESMRNo assigned EC number0.53890.96400.7931yesno
B1JNA9WRBA_YERPYNo assigned EC number0.52720.95800.8040yesno
B4T2V2WRBA_SALNSNo assigned EC number0.50600.95800.8080yesno
Q8Z7N9WRBA_SALTINo assigned EC number0.51210.95800.8080N/Ano
Q3Z3B7WRBA_SHISSNo assigned EC number0.50600.95800.7960yesno
A9R7R8WRBA_YERPGNo assigned EC number0.52720.95800.8040yesno
Q66BP3WRBA_YERPSNo assigned EC number0.52720.95800.8040yesno
B5FR47WRBA_SALDCNo assigned EC number0.50600.95800.8080yesno
B4TEP2WRBA_SALHSNo assigned EC number0.50600.95800.8080yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query167
PRK03767200 PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase 1e-70
TIGR01755197 TIGR01755, flav_wrbA, NAD(P)H:quinone oxidoreducta 2e-57
COG0655207 COG0655, WrbA, Multimeric flavodoxin WrbA [General 7e-40
pfam03358151 pfam03358, FMN_red, NADPH-dependent FMN reductase 7e-15
pfam02525192 pfam02525, Flavodoxin_2, Flavodoxin-like fold 0.002
>gnl|CDD|179647 PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional Back     alignment and domain information 
 Score =  211 bits (540), Expect = 1e-70
 Identities = 88/164 (53%), Positives = 109/164 (66%), Gaps = 2/164 (1%)

Query: 3   QVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGG 62
           +VPET+PEEV  K         P+ TP+ELA+ D  +FG PTRFG MA Q + FLD TGG
Sbjct: 38  RVPETVPEEVAKKAGGKTDQAAPVATPDELADYDAIIFGTPTRFGNMAGQMRNFLDQTGG 97

Query: 63  LWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGYTFGAGMFEMEKV 122
           LW    L GK   +F STG+Q GGQETT  +  T L+HHGM+ V + Y F  G  ++++V
Sbjct: 98  LWAKGALVGKVGSVFTSTGTQHGGQETTITSTHTTLLHHGMVIVGLPYAF-QGQMDVDEV 156

Query: 123 KGGSPYGAGTFA-GDGSRQPTELELEQAFHQGKHIAGIAKKLKG 165
            GGSPYGA T A GDGSRQP+E EL  A +QG+H+A IA KL G
Sbjct: 157 TGGSPYGATTIAGGDGSRQPSENELAGARYQGRHVAEIAAKLAG 200

Length = 200
>gnl|CDD|130816 TIGR01755, flav_wrbA, NAD(P)H:quinone oxidoreductase, type IV Back     alignment and domain information
>gnl|CDD|223728 COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only] Back     alignment and domain information
>gnl|CDD|217511 pfam03358, FMN_red, NADPH-dependent FMN reductase Back     alignment and domain information
>gnl|CDD|217085 pfam02525, Flavodoxin_2, Flavodoxin-like fold Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 167
KOG3135203 consensus 1,4-benzoquinone reductase-like; Trp rep 100.0
TIGR01755197 flav_wrbA NAD(P)H:quinone oxidoreductase, type IV. 99.96
PRK03767200 NAD(P)H:quinone oxidoreductase; Provisional 99.96
COG0655207 WrbA Multimeric flavodoxin WrbA [General function 99.86
PRK11921394 metallo-beta-lactamase/flavodoxin domain-containin 99.71
PRK05452479 anaerobic nitric oxide reductase flavorubredoxin; 99.69
PRK05569141 flavodoxin; Provisional 99.69
PRK06242150 flavodoxin; Provisional 99.68
PRK06756148 flavodoxin; Provisional 99.65
PRK05568142 flavodoxin; Provisional 99.64
TIGR01753140 flav_short flavodoxin, short chain. Flavodoxins ar 99.63
PRK06703151 flavodoxin; Provisional 99.61
COG0426388 FpaA Uncharacterized flavoproteins [Energy product 99.6
PF03358152 FMN_red: NADPH-dependent FMN reductase; InterPro: 99.58
PRK07308146 flavodoxin; Validated 99.55
TIGR03566174 FMN_reduc_MsuE FMN reductase, MsuE subfamily. Memb 99.51
PRK10569191 NAD(P)H-dependent FMN reductase; Provisional 99.51
TIGR03567171 FMN_reduc_SsuE FMN reductase, SsuE family. Members 99.48
PRK00170201 azoreductase; Reviewed 99.4
TIGR02690219 resist_ArsH arsenical resistance protein ArsH. Mem 99.37
PRK09267169 flavodoxin FldA; Validated 99.3
PRK01355199 azoreductase; Reviewed 99.29
PRK13556208 azoreductase; Provisional 99.28
PRK09739199 hypothetical protein; Provisional 99.27
PRK13555208 azoreductase; Provisional 99.2
PRK09271160 flavodoxin; Provisional 99.16
PF02525199 Flavodoxin_2: Flavodoxin-like fold; InterPro: IPR0 99.16
PRK04930184 glutathione-regulated potassium-efflux system anci 99.12
COG1182202 AcpD Acyl carrier protein phosphodiesterase [Lipid 99.11
COG0431184 Predicted flavoprotein [General function predictio 99.11
PRK00871176 glutathione-regulated potassium-efflux system anci 99.07
TIGR01752167 flav_long flavodoxin, long chain. Flavodoxins are 99.0
PRK12359172 flavodoxin FldB; Provisional 98.98
PRK06934221 flavodoxin; Provisional 98.93
PF12682156 Flavodoxin_4: Flavodoxin; PDB: 3EDO_B 3KLB_A. 98.81
TIGR01754140 flav_RNR ribonucleotide reductase-associated flavo 98.75
PRK07116160 flavodoxin; Provisional 98.74
COG2249189 MdaB Putative NADPH-quinone reductase (modulator o 98.72
KOG4530199 consensus Predicted flavoprotein [General function 98.69
PF12724143 Flavodoxin_5: Flavodoxin domain 98.57
PRK09004146 FMN-binding protein MioC; Provisional 98.56
PF00258143 Flavodoxin_1: Flavodoxin; InterPro: IPR008254 This 98.46
PRK11104177 hemG protoporphyrinogen oxidase; Provisional 98.42
PF12641160 Flavodoxin_3: Flavodoxin domain 98.27
COG0716151 FldA Flavodoxins [Energy production and conversion 98.18
PRK08105149 flavodoxin; Provisional 98.16
PRK05723151 flavodoxin; Provisional 97.86
PRK10953 600 cysJ sulfite reductase subunit alpha; Provisional 97.59
TIGR01931 597 cysJ sulfite reductase [NADPH] flavoprotein, alpha 97.4
TIGR00333125 nrdI ribonucleoside-diphosphate reductase 2, opero 96.99
COG4635175 HemG Flavodoxin [Energy production and conversion 96.81
PRK03600134 nrdI ribonucleotide reductase stimulatory protein; 96.81
>KOG3135 consensus 1,4-benzoquinone reductase-like; Trp repressor binding protein-like/protoplast-secreted protein [General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=1.4e-32  Score=202.81  Aligned_cols=166  Identities=77%  Similarity=1.203  Sum_probs=155.0

Q ss_pred             CcccCCCCCHHHHhccCCCCCC-CCCCCChhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEc
Q 031039            1 MVQVPETLPEEVLGKMSAPPKS-DVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYS   79 (167)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~-d~~~~~~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s   79 (167)
                      |+||+|+|+++++.+|++.|++ |++.++.+.|.+||+.+||.||.++++++++|.|+|+...+|..+.|.||++++|.|
T Consensus        35 i~qVpEtl~~evl~km~a~pkp~d~piit~~~L~e~D~flFG~PTRfG~~~AQ~kaF~D~TggLW~~~aL~GK~AG~F~S  114 (203)
T KOG3135|consen   35 IYQVPETLSEEVLEKMKAPPKPSDYPIITPETLTEYDGFLFGFPTRFGNMPAQWKAFWDSTGGLWAKGALAGKPAGIFVS  114 (203)
T ss_pred             EEEcccccCHHHHHHhcCCCCCccCCccCHHHHhhccceeecccccccCcHHHHHHHHhccCchhhhccccCCceeEEEe
Confidence            5799999999999999999985 999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCHHHHHHHHHHHHHHcCcEEecCccc-cCCCcccccccccCCCCccceecC-CCCCCCCHHHHHHHHHHHHHHH
Q 031039           80 TGSQGGGQETTALTAITQLVHHGMIFVPIGYT-FGAGMFEMEKVKGGSPYGAGTFAG-DGSRQPTELELEQAFHQGKHIA  157 (167)
Q Consensus        80 ~g~~~gg~~~~l~~l~~~l~~~g~~vv~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~e~l~~a~~lG~~la  157 (167)
                      .|..+||++++...-...|.+|||++|+.+|+ ......+++++++|++||++++++ ||...|.+.+|+.++..|+.++
T Consensus       115 tgs~gGgqE~talta~t~LvHHGmifVPlGYkn~~a~m~~me~V~Ggsp~GAGt~Ag~DGsR~ps~lEL~~a~~qGk~f~  194 (203)
T KOG3135|consen  115 TGSQGGGQETTALTAITQLVHHGMIFVPLGYKNFGAEMFEMEEVHGGSPWGAGTFAGIDGSREPSELELQQAEIQGKYFA  194 (203)
T ss_pred             ccCCCCchHhHHHHHHHHHHhcceEEEecccchhhhhhhhhhcccCCCCCCCceeecCCCCCCCCHHHHHHHHHhhHHHH
Confidence            99888899988888888899999999999998 444556688899999999999999 9999999999999999999999


Q ss_pred             HHHHHhhcc
Q 031039          158 GIAKKLKGS  166 (167)
Q Consensus       158 ~~~~~l~~~  166 (167)
                      +.+++|+++
T Consensus       195 ~~~kkl~~~  203 (203)
T KOG3135|consen  195 EIVKKLKGP  203 (203)
T ss_pred             HHHHHhcCC
Confidence            999999863

>TIGR01755 flav_wrbA NAD(P)H:quinone oxidoreductase, type IV Back     alignment and domain information
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional Back     alignment and domain information
>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only] Back     alignment and domain information
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional Back     alignment and domain information
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional Back     alignment and domain information
>PRK05569 flavodoxin; Provisional Back     alignment and domain information
>PRK06242 flavodoxin; Provisional Back     alignment and domain information
>PRK06756 flavodoxin; Provisional Back     alignment and domain information
>PRK05568 flavodoxin; Provisional Back     alignment and domain information
>TIGR01753 flav_short flavodoxin, short chain Back     alignment and domain information
>PRK06703 flavodoxin; Provisional Back     alignment and domain information
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion] Back     alignment and domain information
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1 Back     alignment and domain information
>PRK07308 flavodoxin; Validated Back     alignment and domain information
>TIGR03566 FMN_reduc_MsuE FMN reductase, MsuE subfamily Back     alignment and domain information
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional Back     alignment and domain information
>TIGR03567 FMN_reduc_SsuE FMN reductase, SsuE family Back     alignment and domain information
>PRK00170 azoreductase; Reviewed Back     alignment and domain information
>TIGR02690 resist_ArsH arsenical resistance protein ArsH Back     alignment and domain information
>PRK09267 flavodoxin FldA; Validated Back     alignment and domain information
>PRK01355 azoreductase; Reviewed Back     alignment and domain information
>PRK13556 azoreductase; Provisional Back     alignment and domain information
>PRK09739 hypothetical protein; Provisional Back     alignment and domain information
>PRK13555 azoreductase; Provisional Back     alignment and domain information
>PRK09271 flavodoxin; Provisional Back     alignment and domain information
>PF02525 Flavodoxin_2: Flavodoxin-like fold; InterPro: IPR003680 This family consists of a domain with a flavodoxin-like fold Back     alignment and domain information
>PRK04930 glutathione-regulated potassium-efflux system ancillary protein KefG; Provisional Back     alignment and domain information
>COG1182 AcpD Acyl carrier protein phosphodiesterase [Lipid metabolism] Back     alignment and domain information
>COG0431 Predicted flavoprotein [General function prediction only] Back     alignment and domain information
>PRK00871 glutathione-regulated potassium-efflux system ancillary protein KefF; Provisional Back     alignment and domain information
>TIGR01752 flav_long flavodoxin, long chain Back     alignment and domain information
>PRK12359 flavodoxin FldB; Provisional Back     alignment and domain information
>PRK06934 flavodoxin; Provisional Back     alignment and domain information
>PF12682 Flavodoxin_4: Flavodoxin; PDB: 3EDO_B 3KLB_A Back     alignment and domain information
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative Back     alignment and domain information
>PRK07116 flavodoxin; Provisional Back     alignment and domain information
>COG2249 MdaB Putative NADPH-quinone reductase (modulator of drug activity B) [General function prediction only] Back     alignment and domain information
>KOG4530 consensus Predicted flavoprotein [General function prediction only] Back     alignment and domain information
>PF12724 Flavodoxin_5: Flavodoxin domain Back     alignment and domain information
>PRK09004 FMN-binding protein MioC; Provisional Back     alignment and domain information
>PF00258 Flavodoxin_1: Flavodoxin; InterPro: IPR008254 This domain is found in a number of proteins including flavodoxin and nitric-oxide synthase Back     alignment and domain information
>PRK11104 hemG protoporphyrinogen oxidase; Provisional Back     alignment and domain information
>PF12641 Flavodoxin_3: Flavodoxin domain Back     alignment and domain information
>COG0716 FldA Flavodoxins [Energy production and conversion] Back     alignment and domain information
>PRK08105 flavodoxin; Provisional Back     alignment and domain information
>PRK05723 flavodoxin; Provisional Back     alignment and domain information
>PRK10953 cysJ sulfite reductase subunit alpha; Provisional Back     alignment and domain information
>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component Back     alignment and domain information
>TIGR00333 nrdI ribonucleoside-diphosphate reductase 2, operon protein nrdI Back     alignment and domain information
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism] Back     alignment and domain information
>PRK03600 nrdI ribonucleotide reductase stimulatory protein; Reviewed Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query167
3b6i_A198 Wrba From Escherichia Coli, Native Structure Length 2e-33
2zki_A199 Crystal Structure Of Hypothetical Trp Repressor Bin 2e-21
1zwk_A207 Structure Of Wrba From Pseudomonas Aeruginosa Lengt 3e-19
1ydg_A211 Crystal Structure Of Trp Repressor Binding Protein 2e-13
1yrh_A211 Crystal Structure Of Trp Repressor Binding Protein 3e-13
2a5l_A200 The Crystal Structure Of The Trp Repressor Binding 2e-11
>pdb|3B6I|A Chain A, Wrba From Escherichia Coli, Native Structure Length = 198 Back     alignment and structure 
Iteration: 1

 Score =  138 bits (347), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 75/164 (45%), Positives = 102/164 (62%), Gaps = 4/164 (2%)
Query: 3   QVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGG 62
           +VPET+P ++  K     ++  P+ TP ELA+ D  +FG PTRFG M+ Q + FLD TGG
Sbjct: 38  RVPETMPPQLFEKAGGKTQT-APVATPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGG 96
Query: 63  LWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYTFGAGMFEMEKV 122
           LW +  L GK A +F               T  T L HHGM+ VPIGY     +F++ +V
Sbjct: 97  LWASGALYGKLASVFSSTGTGGGQEQTITST-WTTLAHHGMVIVPIGYA-AQELFDVSQV 154
Query: 123 KGGSPYGAGTFA-GDGSRQPTELELEQAFHQGKHIAGIAKKLKG 165
           +GG+PYGA T A GDGSRQP++ EL  A +QG+++AG+A KL G
Sbjct: 155 RGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKLNG 198
>pdb|2ZKI|A Chain A, Crystal Structure Of Hypothetical Trp Repressor Binding Protein From Sul Folobus Tokodaii (St0872) Length = 199 Back     alignment and structure
>pdb|1ZWK|A Chain A, Structure Of Wrba From Pseudomonas Aeruginosa Length = 207 Back     alignment and structure
>pdb|1YDG|A Chain A, Crystal Structure Of Trp Repressor Binding Protein Wrba Length = 211 Back     alignment and structure
>pdb|1YRH|A Chain A, Crystal Structure Of Trp Repressor Binding Protein Wrba In Complex With Fmn Length = 211 Back     alignment and structure
>pdb|2A5L|A Chain A, The Crystal Structure Of The Trp Repressor Binding Protein Wrba From Pseudomonas Aeruginosa Length = 200 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query167
2zki_A199 199AA long hypothetical Trp repressor binding prot 3e-75
2a5l_A200 Trp repressor binding protein WRBA; APC5760, PA094 2e-74
3b6i_A198 Flavoprotein WRBA; flavoproteins, NADH:quinone oxi 9e-74
1ydg_A211 Trp repressor binding protein WRBA; tetramer, stru 3e-73
3d7n_A193 Flavodoxin, WRBA-like protein; structural genomics 2e-64
2ark_A188 Flavodoxin; FMN, structural genomics, PSI, structu 1e-53
1sqs_A242 Conserved hypothetical protein; structural genomic 6e-15
3edo_A151 Flavoprotein, putative Trp repressor binding prote 8e-14
1rli_A184 Trp repressor binding protein; structural genomics 2e-08
2vzf_A197 NADH-dependent FMN reductase; oxidoreductase; 2.50 2e-05
3k1y_A191 Oxidoreductase; structural genomics, PSI-2, protei 2e-05
2fzv_A279 Putative arsenical resistance protein; flavin bind 1e-04
2q62_A247 ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobi 3e-04
3gfs_A174 FMN-dependent NADPH-azoreductase; flavoproteins, q 7e-04
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii} Length = 199 Back     alignment and structure
 Score =  222 bits (568), Expect = 3e-75
 Identities = 65/164 (39%), Positives = 82/164 (50%), Gaps = 5/164 (3%)

Query: 3   QVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGG 62
           +V ETLP E   ++      D+P +T +++  ADGF  G PTR+G MA   K FLD T  
Sbjct: 39  RVRETLPPEFQSRIPFDKVKDIPEVTLDDMRWADGFAIGSPTRYGNMAGGLKTFLDTTAI 98

Query: 63  LWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGYTFGAGMFEMEKV 122
           LW+   L GKP   F    +  GG ETT LT  T   H GMI VPIGY         +  
Sbjct: 99  LWKDNVLYGKPVTFFTEASTVHGGHETTILTMSTYAYHFGMIIVPIGYGIPE---LFQTT 155

Query: 123 KGGSPYGAGTFAGDGSRQPTELELEQAFHQGKHIAGIAKKLKGS 166
            GG PYGA         +  E+E + A  QGK I  +AK +K  
Sbjct: 156 TGGGPYGATHLGSK--EELDEMERKIARFQGKRITEVAKAIKCC 197
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A* Length = 200 Back     alignment and structure
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A* Length = 198 Back     alignment and structure
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A* Length = 211 Back     alignment and structure
>3d7n_A Flavodoxin, WRBA-like protein; structural genomics, PSI, MCS protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens} Length = 193 Back     alignment and structure
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8 Length = 188 Back     alignment and structure
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A* Length = 242 Back     alignment and structure
>3edo_A Flavoprotein, putative Trp repressor binding protein; YP_193882.1, flavoprotein in complex with FMN, structural genomics; HET: MSE FMN; 1.20A {Lactobacillus acidophilus ncfm} Length = 151 Back     alignment and structure
>1rli_A Trp repressor binding protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bacillus subtilis} SCOP: c.23.5.6 Length = 184 Back     alignment and structure
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A* Length = 197 Back     alignment and structure
>3k1y_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, CDR100D; 2.50A {Corynebacterium diphtheriae} PDB: 3k20_A Length = 191 Back     alignment and structure
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4 Length = 279 Back     alignment and structure
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti} Length = 247 Back     alignment and structure
>3gfs_A FMN-dependent NADPH-azoreductase; flavoproteins, quinone reductase, flavodoxin, oligomerization, flavoprotein, oxidoreductase; HET: FMN; 2.10A {Bacillus subtilis} PDB: 1nni_1* 2gsw_A* 3gfr_A* 3gfq_A* Length = 174 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query167
3b6i_A198 Flavoprotein WRBA; flavoproteins, NADH:quinone oxi 99.9
2a5l_A200 Trp repressor binding protein WRBA; APC5760, PA094 99.89
3d7n_A193 Flavodoxin, WRBA-like protein; structural genomics 99.89
1ydg_A211 Trp repressor binding protein WRBA; tetramer, stru 99.87
2zki_A199 199AA long hypothetical Trp repressor binding prot 99.87
2ark_A188 Flavodoxin; FMN, structural genomics, PSI, structu 99.79
3fni_A159 Putative diflavin flavoprotein A 3; alpha-beta pro 99.78
3hly_A161 Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein 99.78
2q62_A247 ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobi 99.73
2fzv_A279 Putative arsenical resistance protein; flavin bind 99.7
5nul_A138 Flavodoxin; electron transport, flavoprotein, FMN; 99.68
1sqs_A242 Conserved hypothetical protein; structural genomic 99.68
4hs4_A199 Chromate reductase; triple-layered, A/B/A structur 99.67
3fvw_A192 Putative NAD(P)H-dependent FMN reductase; Q8DWD8_s 99.66
1rtt_A193 Conserved hypothetical protein; protein structure 99.65
3svl_A193 Protein YIEF; E. coli CHRR enzyme, chromate biorem 99.64
3u7r_A190 NADPH-dependent FMN reductase; alpha/beta twisted 99.64
1rli_A184 Trp repressor binding protein; structural genomics 99.64
3gfs_A174 FMN-dependent NADPH-azoreductase; flavoproteins, q 99.64
4dik_A410 Flavoprotein; TM0755, electron transport, DI-iron 99.62
2ohh_A404 Type A flavoprotein FPRA; beta-lactamase like doma 99.61
2vzf_A197 NADH-dependent FMN reductase; oxidoreductase; 2.50 99.61
3k1y_A191 Oxidoreductase; structural genomics, PSI-2, protei 99.61
2q9u_A414 A-type flavoprotein; flavodoxin like, beta lactama 99.6
2fz5_A137 Flavodoxin; alpha/beta doubly-wound topology, non- 99.6
3s2y_A199 Chromate reductase; uranium reductase, oxidoreduct 99.35
3f6r_A148 Flavodoxin; FMN binding, oxidized, electron transp 99.56
2hpv_A208 FMN-dependent NADH-azoreductase; structural genomi 99.54
1ycg_A398 Nitric oxide reductase; DIIRON site, oxidoreductas 99.54
1e5d_A402 Rubredoxin\:oxygen oxidoreductase; oxygenreductase 99.52
1t5b_A201 Acyl carrier protein phosphodiesterase; structural 99.51
1t0i_A191 YLR011WP; FMN binding protein, flavodoxin, azoredu 99.5
1f4p_A147 Flavodoxin; electron transport, flavoprotein, FMN, 99.48
3f2v_A192 General stress protein 14; alpha-beta protein., st 99.46
3ha2_A177 NADPH-quinone reductase; structural genomics, PSI- 99.45
2amj_A204 Modulator of drug activity B; oxidoreductase, mena 99.41
3r6w_A212 FMN-dependent NADH-azoreductase 1; nitrofurazone, 99.41
3u7i_A223 FMN-dependent NADH-azoreductase 1; structural geno 99.4
3p0r_A211 Azoreductase; structural genomics, center for stru 99.38
3lcm_A196 SMU.1420, putative oxidoreductase; NADPH:quinone o 99.37
3l9w_A413 Glutathione-regulated potassium-efflux system Pro 99.32
1czn_A169 Flavodoxin; FMN binding, redox potential, electron 99.3
1obo_A169 Flavodoxin; electron transfer, flavoprotein, elect 99.28
3rpe_A218 MDAB, modulator of drug activity B; structural gen 99.23
1d4a_A273 DT-diaphorase, quinone reductase; flavoprotein, ro 99.23
1yob_A179 Flavodoxin 2, flavodoxin II; alpha-beta fold, non- 99.2
1ykg_A167 SIR-FP, sulfite reductase [NADPH] flavoprotein alp 99.2
3tem_A228 Ribosyldihydronicotinamide dehydrogenase [quinone; 99.19
1ag9_A175 Flavodoxin; electron transport, reductive activati 99.19
2fcr_A173 Flavodoxin; electron transport; HET: FMN; 1.80A {C 99.19
3klb_A162 Putative flavoprotein; structural genomi center fo 99.18
2wc1_A182 Flavodoxin; electron transport, flavoprotein; HET: 99.12
2hna_A147 Protein MIOC, flavodoxin; alpha-beta sandwich, fla 99.05
4ici_A171 Putative flavoprotein; PF12682 family protein, fla 99.05
4gi5_A280 Quinone reductase; protein structure initiative, F 99.01
3edo_A151 Flavoprotein, putative Trp repressor binding prote 99.0
1bvy_F191 Protein (cytochrome P450 BM-3); fatty acid monooxy 98.91
2bmv_A164 Flavodoxin; electron transport, flavoprotein, FMN, 98.87
2xod_A119 NRDI protein, NRDI; flavoprotein, redox protein, r 98.56
2bpo_A 682 CPR, P450R, NADPH-cytochrom P450 reductase; NADPH- 98.48
3hr4_A219 Nitric oxide synthase, inducible; inducible nitric 98.47
3qe2_A 618 CPR, P450R, NADPH--cytochrome P450 reductase; cypo 97.89
1tll_A 688 Nitric-oxide synthase, brain; reductase module, FM 97.84
1rlj_A139 NRDI protein; flavoprotein, FMN, thioredoxin, alph 97.16
3n3a_C153 Protein NRDI; ribonucleotide reductase, four-helix 97.09
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A* Back     alignment and structure
Probab=99.90  E-value=9.4e-23  Score=154.63  Aligned_cols=136  Identities=55%  Similarity=0.942  Sum_probs=111.3

Q ss_pred             ChhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHHHcCcEEec
Q 031039           28 TPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVP  107 (167)
Q Consensus        28 ~~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~~g~~vv~  107 (167)
                      ..+++.+||+||||||+|++++++++|.|+|++...|....++||++++|+++||. ++...++..+...+..+||.+++
T Consensus        62 ~~~~l~~aD~ii~gsP~y~~~~~~~lk~~ld~~~~~~~~~~l~~K~~~~~~t~g~~-g~~~~~l~~l~~~l~~~g~~~v~  140 (198)
T 3b6i_A           62 TPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGTG-GGQEQTITSTWTTLAHHGMVIVP  140 (198)
T ss_dssp             CGGGGGGCSEEEEEEEEETTEECHHHHHHHTTCHHHHHHTTTTTCEEEEEEEESSS-TTHHHHHHHHHHHHHHTTCEECC
T ss_pred             hHHHHHHCCEEEEEeChhcCCchHHHHHHHHHhhhhhhhcccCCCEEEEEEeCCCC-ccHHHHHHHHHHHHHHCCcEEEC
Confidence            37899999999999999999999999999999976655557899999999999997 67778888999999999999998


Q ss_pred             CccccCCCcccccccccCCCCccceecC-CCCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Q 031039          108 IGYTFGAGMFEMEKVKGGSPYGAGTFAG-DGSRQPTELELEQAFHQGKHIAGIAKKLKG  165 (167)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~e~l~~a~~lG~~la~~~~~l~~  165 (167)
                      .++..+. ....+.+.++..||...+.+ +++..|+++++++|+++|++|++.+++|++
T Consensus       141 ~~~~~~~-~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~a~~~g~~la~~~~~~~~  198 (198)
T 3b6i_A          141 IGYAAQE-LFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKLNG  198 (198)
T ss_dssp             CTTCSGG-GGCCSSCCCCBTTBCEEECCTTSCCCCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCCCccc-ccccccccCCCCCCcceecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence            7764210 00011245677888877754 445679999999999999999999998863
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A* Back     alignment and structure
>3d7n_A Flavodoxin, WRBA-like protein; structural genomics, PSI, MCS protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens} Back     alignment and structure
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A* Back     alignment and structure
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii} Back     alignment and structure
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8 Back     alignment and structure
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A Back     alignment and structure
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301} Back     alignment and structure
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti} Back     alignment and structure
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4 Back     alignment and structure
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A* Back     alignment and structure
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A* Back     alignment and structure
>4hs4_A Chromate reductase; triple-layered, A/B/A structure, NAD(P)H-dependent FMN reduc oxidoreductase; HET: FMN; 2.10A {Gluconacetobacter hansenii} PDB: 3s2y_A* 4h6p_A* Back     alignment and structure
>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans} Back     alignment and structure
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A* Back     alignment and structure
>3svl_A Protein YIEF; E. coli CHRR enzyme, chromate bioremediation, tetramer role, mutant enzymes, oxidoreductase; HET: FMN; 2.20A {Escherichia coli} Back     alignment and structure
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans} Back     alignment and structure
>1rli_A Trp repressor binding protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bacillus subtilis} SCOP: c.23.5.6 Back     alignment and structure
>3gfs_A FMN-dependent NADPH-azoreductase; flavoproteins, quinone reductase, flavodoxin, oligomerization, flavoprotein, oxidoreductase; HET: FMN; 2.10A {Bacillus subtilis} SCOP: c.23.5.4 PDB: 1nni_1* 2gsw_A* 3gfr_A* 3gfq_A* Back     alignment and structure
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A* Back     alignment and structure
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A* Back     alignment and structure
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A* Back     alignment and structure
>3k1y_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, CDR100D; 2.50A {Corynebacterium diphtheriae} PDB: 3k20_A Back     alignment and structure
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis} Back     alignment and structure
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1 Back     alignment and structure
>3s2y_A Chromate reductase; uranium reductase, oxidoreductase; HET: FMN PG4; 2.24A {Gluconacetobacter hansenii} Back     alignment and structure
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A* Back     alignment and structure
>2hpv_A FMN-dependent NADH-azoreductase; structural genomics, PS protein structure initiative, southeast collaboratory for S genomics, secsg; HET: FMN; 2.00A {Enterococcus faecalis} Back     alignment and structure
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A* Back     alignment and structure
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3 Back     alignment and structure
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A* Back     alignment and structure
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4 Back     alignment and structure
>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ... Back     alignment and structure
>3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola} Back     alignment and structure
>3ha2_A NADPH-quinone reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics, consortium, NESG; HET: MSE; 1.80A {Pediococcus pentosaceus atcc 25745} Back     alignment and structure
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A* Back     alignment and structure
>3r6w_A FMN-dependent NADH-azoreductase 1; nitrofurazone, P. aeruginosa, nitroreductase, flavodoxin, oxidoreductase; HET: FMN NFZ; 2.08A {Pseudomonas aeruginosa} PDB: 3lt5_A* 2v9c_A* 3keg_A* Back     alignment and structure
>3u7i_A FMN-dependent NADH-azoreductase 1; structural genomics, the center for structural genomics of I diseases, csgid, oxidoreductase; HET: MSE; 1.75A {Bacillus anthracis} Back     alignment and structure
>3p0r_A Azoreductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.80A {Bacillus anthracis} Back     alignment and structure
>3lcm_A SMU.1420, putative oxidoreductase; NADPH:quinone oxidoreductase, MDAB; HET: FAD NAP; 1.80A {Streptococcus mutans} PDB: 4f8y_A* Back     alignment and structure
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* Back     alignment and structure
>1czn_A Flavodoxin; FMN binding, redox potential, electron transport; HET: FMN; 1.70A {Synechococcus elongatus} SCOP: c.23.5.1 PDB: 1czl_A* 1czu_A* 1d04_A* 1ofv_A* 1czr_A* 1czk_A* 1czo_A* 1czh_A* 1d03_A* Back     alignment and structure
>1obo_A Flavodoxin; electron transfer, flavoprotein, electron transport; HET: FMN; 1.2A {Anabaena SP} SCOP: c.23.5.1 PDB: 2v5v_A* 1dx9_A 1rcf_A* 1flv_A* 1obv_A* 2v5u_A* 1ftg_A 1qhe_A 2kqu_A 3esy_A* 3esz_A* 3esx_A* Back     alignment and structure
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis} Back     alignment and structure
>1d4a_A DT-diaphorase, quinone reductase; flavoprotein, rossman fold, oxidoreductase; HET: FAD; 1.70A {Homo sapiens} SCOP: c.23.5.3 PDB: 1dxo_A* 1gg5_A* 1kbo_A* 1kbq_A* 2f1o_A* 3jsx_A* 1h69_A* 1h66_A* 1qbg_A* 1dxq_A* 1qrd_A* Back     alignment and structure
>1yob_A Flavodoxin 2, flavodoxin II; alpha-beta fold, non- covalently bound FMN, electron transport; HET: FMN; 2.25A {Azotobacter vinelandii} SCOP: c.23.5.1 Back     alignment and structure
>1ykg_A SIR-FP, sulfite reductase [NADPH] flavoprotein alpha- component; electron transport; HET: FMN; NMR {Escherichia coli} SCOP: c.23.5.2 Back     alignment and structure
>3tem_A Ribosyldihydronicotinamide dehydrogenase [quinone; oxidoreductase-oxidoreductase inhibitor complex; HET: FAD 6A1 IMD; 1.45A {Homo sapiens} SCOP: c.23.5.3 PDB: 3te7_A* 3tzb_A* 3fw1_A* 2qwx_A* 1zx1_A* 3g5m_A* 3gam_A* 3ovm_A* 3owh_A* 3owx_A* 3ox1_A* 3ox2_A* 3ox3_A* 1sg0_A* 1qr2_A* 1xi2_A* 2qmy_A* 2qmz_A* 2qr2_A* 2qx4_A* ... Back     alignment and structure
>1ag9_A Flavodoxin; electron transport, reductive activation; HET: FMN BTB; 1.80A {Escherichia coli} SCOP: c.23.5.1 PDB: 1ahn_A* Back     alignment and structure
>2fcr_A Flavodoxin; electron transport; HET: FMN; 1.80A {Chondrus crispus} SCOP: c.23.5.1 Back     alignment and structure
>3klb_A Putative flavoprotein; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: FMN; 1.75A {Bacteroides fragilis nctc 9343} Back     alignment and structure
>2wc1_A Flavodoxin; electron transport, flavoprotein; HET: FMN; 2.17A {Rhodobacter capsulatus} Back     alignment and structure
>2hna_A Protein MIOC, flavodoxin; alpha-beta sandwich, flavodoxin fold, electron transport; NMR {Escherichia coli} PDB: 2hnb_A Back     alignment and structure
>4ici_A Putative flavoprotein; PF12682 family protein, flavodoxin_4, structural genomics, J center for structural genomics, JCSG; HET: MSE FMN EPE; 1.40A {Bacteroides eggerthii} Back     alignment and structure
>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp} Back     alignment and structure
>3edo_A Flavoprotein, putative Trp repressor binding protein; YP_193882.1, flavoprotein in complex with FMN, structural genomics; HET: MSE FMN; 1.20A {Lactobacillus acidophilus ncfm} Back     alignment and structure
>1bvy_F Protein (cytochrome P450 BM-3); fatty acid monooxygenase, hemoprotein, flavoprotein, electron transfer, oxidoreductase; HET: HEM FMN; 2.03A {Bacillus megaterium} SCOP: c.23.5.1 Back     alignment and structure
>2bmv_A Flavodoxin; electron transport, flavoprotein, FMN, transport protein; 2.11A {Helicobacter pylori} PDB: 2w5u_A* 1fue_A* Back     alignment and structure
>2xod_A NRDI protein, NRDI; flavoprotein, redox protein, ribonucleotide reductase; HET: FMN; 0.96A {Bacillus anthracis} PDB: 2xoe_A* 2x2o_A* 2x2p_A* Back     alignment and structure
>2bpo_A CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-cytochrome P450 reductase, diflavin reductase, FAD, FMN-binding, electron transfer; HET: FAD FMN NAP; 2.9A {Saccharomyces cerevisiae} PDB: 2bn4_A* 2bf4_A* Back     alignment and structure
>3hr4_A Nitric oxide synthase, inducible; inducible nitric oxide synthase, NOS, INOS, CALM binding, FAD, FMN, heme, iron, metal-binding, NADP, oxidore phosphoprotein; HET: FMN; 2.50A {Homo sapiens} Back     alignment and structure
>3qe2_A CPR, P450R, NADPH--cytochrome P450 reductase; cypor, antley-bixler syndrome, flavoprotein, FMN, FAD, oxidoreductase; HET: FAD FMN NAP; 1.75A {Homo sapiens} PDB: 3qfc_A* 3qfr_A* 1amo_A* 1j9z_A* 1ja0_A* 1ja1_A* 3es9_A* 3ojw_A* 3ojx_A* 3fjo_A* 1b1c_A* Back     alignment and structure
>1tll_A Nitric-oxide synthase, brain; reductase module, FMN, FAD, NADP+, oxidoreductase; HET: FMN FAD NAP; 2.30A {Rattus norvegicus} SCOP: b.43.4.1 c.23.5.2 c.25.1.4 Back     alignment and structure
>1rlj_A NRDI protein; flavoprotein, FMN, thioredoxin, alpha/beta/alpha sandwich, structural genomics, PSI, protein structure initiative; HET: FMN; 2.00A {Bacillus subtilis} SCOP: c.23.5.7 Back     alignment and structure
>3n3a_C Protein NRDI; ribonucleotide reductase, four-helix bundle, dimanganese CLU flavoprotein, oxidoreductase; HET: FMN; 1.99A {Escherichia coli} PDB: 3n39_C* 3n3b_C* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 167
d1ydga_201 c.23.5.8 (A:) Trp repressor binding protein WrbA { 5e-40
d2a5la1196 c.23.5.8 (A:3-198) Trp repressor binding protein W 2e-37
d2arka1184 c.23.5.8 (A:1-184) Flavodoxin FldA {Aquifex aeolic 2e-24
d1sqsa_232 c.23.5.5 (A:) Hypothetical protein SP1951 {(Strept 1e-15
d1rlia_179 c.23.5.6 (A:) Hypothetical protein YwqN {Bacillus 5e-11
d1e5da1152 c.23.5.1 (A:251-402) Rubredoxin oxygen:oxidoreduct 1e-09
d1t0ia_185 c.23.5.4 (A:) Hypothetical protein Ylr011wp {Baker 7e-05
d1vmea1148 c.23.5.1 (A:251-398) ROO-like flavoprotein TM0755, 0.001
>d1ydga_ c.23.5.8 (A:) Trp repressor binding protein WrbA {Deinococcus radiodurans [TaxId: 1299]} Length = 201 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: WrbA-like
domain: Trp repressor binding protein WrbA
species: Deinococcus radiodurans [TaxId: 1299]

 Score =  131 bits (331), Expect = 5e-40
 Identities = 57/172 (33%), Positives = 79/172 (45%), Gaps = 12/172 (6%)

Query: 1   MVQVPETLPEEVLG-----KMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKA 55
           +++V ET P++V+      K +     DVP  TP +L  A+  VF  PTRFG   +Q +A
Sbjct: 36  LLKVRETAPQDVIDGQDAWKANIEAMKDVPEATPADLEWAEAIVFSSPTRFGGATSQMRA 95

Query: 56  FLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGYTFGAG 115
           F+D  GGLW + +LA K      S  +  GGQETT  T     +H G +  P GYT    
Sbjct: 96  FIDTLGGLWSSGKLANKTFSAMTSAQNVNGGQETTLQTLYMTAMHWGAVLTPPGYTDEVI 155

Query: 116 MFEMEKVKGGSPYGAGTFAGDGSRQPTELELEQAFHQGKHIAGIAKKLKGSA 167
                   GG+PYGA   A    +   E +     HQ +    +  KL    
Sbjct: 156 F-----KSGGNPYGASVTANG--QPLLENDRASIRHQVRRQVELTAKLLEGG 200
>d2a5la1 c.23.5.8 (A:3-198) Trp repressor binding protein WrbA {Pseudomonas aeruginosa [TaxId: 287]} Length = 196 Back     information, alignment and structure
>d2arka1 c.23.5.8 (A:1-184) Flavodoxin FldA {Aquifex aeolicus [TaxId: 63363]} Length = 184 Back     information, alignment and structure
>d1sqsa_ c.23.5.5 (A:) Hypothetical protein SP1951 {(Streptococcus pneumoniae) [TaxId: 1313]} Length = 232 Back     information, alignment and structure
>d1rlia_ c.23.5.6 (A:) Hypothetical protein YwqN {Bacillus subtilis [TaxId: 1423]} Length = 179 Back     information, alignment and structure
>d1e5da1 c.23.5.1 (A:251-402) Rubredoxin oxygen:oxidoreductase (ROO), C-terminal domain {Desulfovibrio gigas [TaxId: 879]} Length = 152 Back     information, alignment and structure
>d1t0ia_ c.23.5.4 (A:) Hypothetical protein Ylr011wp {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 185 Back     information, alignment and structure
>d1vmea1 c.23.5.1 (A:251-398) ROO-like flavoprotein TM0755, C-terminal domain {Thermotoga maritima [TaxId: 2336]} Length = 148 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query167
d1ydga_201 Trp repressor binding protein WrbA {Deinococcus ra 99.93
d2arka1184 Flavodoxin FldA {Aquifex aeolicus [TaxId: 63363]} 99.92
d2a5la1196 Trp repressor binding protein WrbA {Pseudomonas ae 99.91
d1e5da1152 Rubredoxin oxygen:oxidoreductase (ROO), C-terminal 99.8
d1ycga1149 Nitric oxide reductase C-terminal domain {Moorella 99.79
d1rlia_179 Hypothetical protein YwqN {Bacillus subtilis [TaxI 99.69
d1sqsa_232 Hypothetical protein SP1951 {(Streptococcus pneumo 99.68
d2fzva1233 Putative arsenical resistance protein {Shigella fl 99.65
d1nni1_171 Azobenzene reductase {Bacillus subtilis [TaxId: 14 99.65
d1rtta_174 Hypothetical protein PA1204 {Pseudomonas aeruginos 99.55
d2fz5a1137 Flavodoxin {Megasphaera elsdenii [TaxId: 907]} 99.55
d5nula_138 Flavodoxin {Clostridium beijerinckii [TaxId: 1520] 99.55
d1vmea1148 ROO-like flavoprotein TM0755, C-terminal domain {T 99.5
d1t0ia_185 Hypothetical protein Ylr011wp {Baker's yeast (Sacc 99.48
d2z98a1200 ACP phosphodiesterase AcpD {Escherichia coli [TaxI 99.37
d1d4aa_273 NAD(P)H:quinone reductase {Human (Homo sapiens) [T 99.12
d2qwxa1230 Quinone reductase type 2 (menadione reductase) {Hu 99.08
d1f4pa_147 Flavodoxin {Desulfovibrio vulgaris [TaxId: 881]} 99.04
d1oboa_169 Flavodoxin {Anabaena, pcc 7119 and 7120 [TaxId: 11 98.78
d1czna_169 Flavodoxin {Synechococcus elongatus PCC 7942 [TaxI 98.68
d1ag9a_175 Flavodoxin {Escherichia coli [TaxId: 562]} 98.54
d1yoba1179 Flavodoxin {Azotobacter vinelandii [TaxId: 354]} 98.51
d2fcra_173 Flavodoxin {Chondrus crispus [TaxId: 2769]} 98.33
d1ykga1146 Sulfite reductase alpha-component CysJ N-terminal 98.31
d1fuea_163 Flavodoxin {Helicobacter pylori [TaxId: 210]} 97.92
d1ja1a2177 NADPH-cytochrome p450 reductase, N-terminal domain 97.63
d1bvyf_152 FMN-binding domain of the cytochrome P450bm-3 {Bac 97.16
d1rlja_135 Flavoprotein NrdI {Bacillus subtilis [TaxId: 1423] 96.62
d1tlla2202 Nitric oxide (NO) synthase FMN domain {Rat (Rattus 96.61
>d1ydga_ c.23.5.8 (A:) Trp repressor binding protein WrbA {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: WrbA-like
domain: Trp repressor binding protein WrbA
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.93  E-value=4.8e-26  Score=172.91  Aligned_cols=136  Identities=35%  Similarity=0.511  Sum_probs=115.7

Q ss_pred             CCCCCCChhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHHHc
Q 031039           22 SDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHH  101 (167)
Q Consensus        22 ~d~~~~~~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~~  101 (167)
                      |+... ..++|.+||+||||||+||++++++||.||||+..+|....|.||+++.|+++|+.+++++.++..+...+..+
T Consensus        63 d~~~~-~~~~i~~aD~ii~gsPvy~~~~s~~~k~flDr~~~~~~~~~l~gK~~~~~~s~g~~~gg~e~~~~~~~~~~~~~  141 (201)
T d1ydga_          63 DVPEA-TPADLEWAEAIVFSSPTRFGGATSQMRAFIDTLGGLWSSGKLANKTFSAMTSAQNVNGGQETTLQTLYMTAMHW  141 (201)
T ss_dssp             TSCBC-CHHHHHHCSEEEEEEEEETTEECHHHHHHHHTTHHHHHTTTTTTCEEEEEEEESSTTSSTTHHHHHHHHHHHTT
T ss_pred             Cchhh-hhhhHhhCCEeEEecceeeeeccchhHHHHHHhhhHHhccccCCceeeeeeccccCCCchHHHHHhHHHHHHHc
Confidence            44444 49999999999999999999999999999999987777778999999999999999889999999999999999


Q ss_pred             CcEEecCccccCCCcccccccccCCCCccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Q 031039          102 GMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFAGDGSRQPTELELEQAFHQGKHIAGIAKKLKG  165 (167)
Q Consensus       102 g~~vv~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~l~~a~~lG~~la~~~~~l~~  165 (167)
                      ||.+++.++....     ....++++||+.....  ...+++++++.|++|||+||+++++|+.
T Consensus       142 g~~~v~~~~~~~~-----~~~~gg~~~G~~~~~~--~~~~~e~~l~~ar~lGk~la~~a~kL~~  198 (201)
T d1ydga_         142 GAVLTPPGYTDEV-----IFKSGGNPYGASVTAN--GQPLLENDRASIRHQVRRQVELTAKLLE  198 (201)
T ss_dssp             TCEECCCTTCSHH-----HHHTTCCSSSCEEECC--SSCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCccccccccchh-----hhcCCCcccCcceecC--CCCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999987654211     1124678899887754  3468899999999999999999999974
>d2arka1 c.23.5.8 (A:1-184) Flavodoxin FldA {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d2a5la1 c.23.5.8 (A:3-198) Trp repressor binding protein WrbA {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1e5da1 c.23.5.1 (A:251-402) Rubredoxin oxygen:oxidoreductase (ROO), C-terminal domain {Desulfovibrio gigas [TaxId: 879]} Back     information, alignment and structure
>d1ycga1 c.23.5.1 (A:251-399) Nitric oxide reductase C-terminal domain {Moorella thermoacetica [TaxId: 1525]} Back     information, alignment and structure
>d1rlia_ c.23.5.6 (A:) Hypothetical protein YwqN {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1sqsa_ c.23.5.5 (A:) Hypothetical protein SP1951 {(Streptococcus pneumoniae) [TaxId: 1313]} Back     information, alignment and structure
>d2fzva1 c.23.5.4 (A:1-233) Putative arsenical resistance protein {Shigella flexneri [TaxId: 623]} Back     information, alignment and structure
>d1nni1_ c.23.5.4 (1:) Azobenzene reductase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1rtta_ c.23.5.4 (A:) Hypothetical protein PA1204 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d2fz5a1 c.23.5.1 (A:1-137) Flavodoxin {Megasphaera elsdenii [TaxId: 907]} Back     information, alignment and structure
>d5nula_ c.23.5.1 (A:) Flavodoxin {Clostridium beijerinckii [TaxId: 1520]} Back     information, alignment and structure
>d1vmea1 c.23.5.1 (A:251-398) ROO-like flavoprotein TM0755, C-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1t0ia_ c.23.5.4 (A:) Hypothetical protein Ylr011wp {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2z98a1 c.23.5.3 (A:1-200) ACP phosphodiesterase AcpD {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1d4aa_ c.23.5.3 (A:) NAD(P)H:quinone reductase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2qwxa1 c.23.5.3 (A:1-230) Quinone reductase type 2 (menadione reductase) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1f4pa_ c.23.5.1 (A:) Flavodoxin {Desulfovibrio vulgaris [TaxId: 881]} Back     information, alignment and structure
>d1oboa_ c.23.5.1 (A:) Flavodoxin {Anabaena, pcc 7119 and 7120 [TaxId: 1163]} Back     information, alignment and structure
>d1czna_ c.23.5.1 (A:) Flavodoxin {Synechococcus elongatus PCC 7942 [TaxId: 1140]} Back     information, alignment and structure
>d1ag9a_ c.23.5.1 (A:) Flavodoxin {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1yoba1 c.23.5.1 (A:1-179) Flavodoxin {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d2fcra_ c.23.5.1 (A:) Flavodoxin {Chondrus crispus [TaxId: 2769]} Back     information, alignment and structure
>d1ykga1 c.23.5.2 (A:63-208) Sulfite reductase alpha-component CysJ N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1fuea_ c.23.5.1 (A:) Flavodoxin {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d1ja1a2 c.23.5.2 (A:63-239) NADPH-cytochrome p450 reductase, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1bvyf_ c.23.5.1 (F:) FMN-binding domain of the cytochrome P450bm-3 {Bacillus megaterium [TaxId: 1404]} Back     information, alignment and structure
>d1rlja_ c.23.5.7 (A:) Flavoprotein NrdI {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1tlla2 c.23.5.2 (A:750-951) Nitric oxide (NO) synthase FMN domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure