Citrus Sinensis ID: 031062

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160------
Protein Sequence
MEETMKQFQQNLIEIENEAEHLLFARHQLVESDIVRNGNREALTALRKRARTTKTSVISPFESIMKDTGGPGTRPLVKEVCTTCGNHDSNEHTWMMFPGTDVFAKIPFHAAHTILETDQTRLDFEAKKLQSYVKEKSLFISEKGALADKISPGVLRSLVTLTDKSK
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccHHHHHcccccccccccccccccccccccccccccccccccEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccccccHHHHHHHcccccccccEEEEcccccccccccccEEEccccHHHEEccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHcHHHccccccHHHHHEEcccccc
Coil and Loop (DISEMBL)
MEETMKQFQQNLIEIENEAEHLLFARHQLVESDIVRNGNREALTALRKRARttktsvispfesimkdtggpgtrplvKEVCttcgnhdsnehtwmmfpgtdvfakipfhaahtiletdQTRLDFEAKKLQSYVKEKSLFisekgaladkispgvLRSLVTLTDKSK
Flexible Loop (DISEMBL)
MEETMKQFQQNLIEIENEAEHLLFARHQLvesdivrngNREALTAlrkrarttktsvispfesimkdtggpgtrPLVKEVCTTCGNHDSNEHTWMMFPGTDVFAKIPFHAAHTILETDQTRLDFEAKKLQSYVKEKslfisekgaladkispgvlrslvtltdksk
Low Complexity Region (SEG)
MEETMKQFQQNLIEIENEAEHLLFARHQLVESDIVRNGNREaltalrkrarttktSVISPFESIMKDTGGPGTRPLVKEVCTTCGNHDSNEHTWMMFPGTDVFAKIPFHAAHTILETDQTRLDFEAKKLQSYVKEKSLFISEKGALADKISPGVLRSLVTLTDKSK
Disordered region (IsUnstruct)
***********LIEIENEAEHLLFARHQLVESDIVRNGNREALT*****************************RPLVKEVCTTCGNHDSNEHTWMMFPGTDVFAKIPFHAAHTILETDQTRLDFEAKKLQSYVKEKSLFISEKGALADKISPGVLRSLV*******
Disordered Region (DISOPRED)
******Q**QNLIEIENEAEHLLFARHQLVESDI**N************************************RPLVKEVCTTCGNHDSNEHTWMMFPGTDVFAKIPFHAAHTILET******F*AKKLQSYVKEKSLFISEKGALADKISPGVLRSLVTLT****
Disordered Region (DISEMBL)
********QQNLIEIENEAEHLLFARHQLVESDIVRNGNREALTALRKRARTTKTSVISPFESIMKDTGGPGTRPLVKEVCTTCGNHDSNEHTWMMFPGTDVFAKIPFHAAHTILETDQTRLDFEAKKLQSYVKEKSLFISEKGALADKISPGVLRSLVTLTDKSK
Disordered Region (DISPRO)
***TMKQFQQNLIEIENEAEHLLFARHQLVESDIVR***********K********V*SP**S*******PGTRPLVKEVCTTCGNHDSNEHTWMMFPGTDVFAKIPFHAAHTILETDQTRLDFEAKKLQSYVKEKSLFISEKGALADKISPGVLRSLVTLT****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MEETxxxxxxxxxxxxxxxxxxxxxRHQLVESDIVRNGNREALTALRKRARTTKTSVISPFESIMKDTGGPGTRPLVKEVCTTCGNHDSNEHTWMMFPGTDVFAKIPFHAAHTILETDQTRLDFEAKKLQSYVKEKSLFISEKGALADKISPGVLRSLVTLTDKSK
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	166
449431974	166	PREDICTED: uncharacterized protein LOC10	1.0	1.0	0.807	1e-75
255541142	166	conserved hypothetical protein [Ricinus	0.987	0.987	0.798	2e-75
225453486	166	PREDICTED: uncharacterized protein LOC10	1.0	1.0	0.789	6e-72
356520804	166	PREDICTED: uncharacterized protein LOC10	1.0	1.0	0.777	1e-71
351723295	166	uncharacterized protein LOC100306543 [Gl	1.0	1.0	0.771	3e-71
297734562	162	unnamed protein product [Vitis vinifera]	0.975	1.0	0.796	2e-70
147776394	169	hypothetical protein VITISV_040543 [Viti	1.0	0.982	0.775	3e-70
326524347	166	predicted protein [Hordeum vulgare subsp	1.0	1.0	0.680	6e-65
357111984	166	PREDICTED: uncharacterized protein LOC10	1.0	1.0	0.674	4e-64
357122813	166	PREDICTED: uncharacterized protein LOC10	1.0	1.0	0.680	5e-64

>gi|449431974|ref|XP_004133775.1| PREDICTED: uncharacterized protein LOC101220956 [Cucumis sativus] gi|449478019|ref|XP_004155197.1| PREDICTED: uncharacterized LOC101220956 [Cucumis sativus]

 Score =  287 bits (734), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 134/166 (80%), Positives = 152/166 (91%)

Query: 1   MEETMKQFQQNLIEIENEAEHLLFARHQLVESDIVRNGNREALTALRKRARTTKTSVISP 60
           M ETM+QFQQ+LIE+E EAE LL AR +LVE+D VRNGNREALTALR+RARTTK+SV SP
Sbjct: 1   MNETMRQFQQSLIELEAEAERLLLARDELVENDRVRNGNREALTALRRRARTTKSSVPSP 60

Query: 61  FESIMKDTGGPGTRPLVKEVCTTCGNHDSNEHTWMMFPGTDVFAKIPFHAAHTILETDQT 120
           FESIMK+  G  +RPLVKE+CTTCGNHDSNE TWMMFPGTDVFA++PFHAAHTILETDQT
Sbjct: 61  FESIMKEVEGAESRPLVKEICTTCGNHDSNERTWMMFPGTDVFARVPFHAAHTILETDQT 120

Query: 121 RLDFEAKKLQSYVKEKSLFISEKGALADKISPGVLRSLVTLTDKSK 166
           +LDFEAKKLQSYVK++SL ISEKGALADKISPGVL+++VTLTDK K
Sbjct: 121 KLDFEAKKLQSYVKDQSLLISEKGALADKISPGVLKAMVTLTDKPK 166

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541142|ref|XP_002511635.1| conserved hypothetical protein [Ricinus communis] gi|223548815|gb|EEF50304.1| conserved hypothetical protein [Ricinus communis]

 Score =  286 bits (732), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 131/164 (79%), Positives = 148/164 (90%)

Query: 1   MEETMKQFQQNLIEIENEAEHLLFARHQLVESDIVRNGNREALTALRKRARTTKTSVISP 60
           M+E+MKQFQQ+L+E+E EAEHLL ARHQ+VE+D +RNGNRE LTALRKRARTT+TSV SP
Sbjct: 1   MDESMKQFQQSLVELETEAEHLLLARHQVVENDKIRNGNREVLTALRKRARTTRTSVPSP 60

Query: 61  FESIMKDTGGPGTRPLVKEVCTTCGNHDSNEHTWMMFPGTDVFAKIPFHAAHTILETDQT 120
           FESIMKD G   ++PLVKEVC TCGNHDS+E TWMMFPG+DVFA IPFHAAHTILETDQ 
Sbjct: 61  FESIMKDIGRSASKPLVKEVCATCGNHDSDERTWMMFPGSDVFASIPFHAAHTILETDQE 120

Query: 121 RLDFEAKKLQSYVKEKSLFISEKGALADKISPGVLRSLVTLTDK 164
           R+D+EAKKLQSY+KEKS  ISE+GALADKISPGVLRSLV LTDK
Sbjct: 121 RVDYEAKKLQSYIKEKSFLISERGALADKISPGVLRSLVALTDK 164

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453486|ref|XP_002277222.1| PREDICTED: uncharacterized protein LOC100261542 [Vitis vinifera]

 Score =  275 bits (702), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 131/166 (78%), Positives = 146/166 (87%)

Query: 1   MEETMKQFQQNLIEIENEAEHLLFARHQLVESDIVRNGNREALTALRKRARTTKTSVISP 60
           M+E+MKQ QQ LIEIE EAE++L ARHQLVE+D VRNGNREALTALRKRARTTKTSV SP
Sbjct: 1   MDESMKQLQQGLIEIEIEAENVLLARHQLVENDRVRNGNREALTALRKRARTTKTSVPSP 60

Query: 61  FESIMKDTGGPGTRPLVKEVCTTCGNHDSNEHTWMMFPGTDVFAKIPFHAAHTILETDQT 120
           FESIMK+     +RPLVKEVC TCGNHDS E+TW MFPGTDVFA+IPFHAAH+ILE DQ 
Sbjct: 61  FESIMKEIEQLESRPLVKEVCATCGNHDSRENTWTMFPGTDVFARIPFHAAHSILEKDQE 120

Query: 121 RLDFEAKKLQSYVKEKSLFISEKGALADKISPGVLRSLVTLTDKSK 166
           RLD++AKKLQSY+KEKS  ISEKG LADKISPG++RSLVTLTDK K
Sbjct: 121 RLDYDAKKLQSYLKEKSFLISEKGVLADKISPGIIRSLVTLTDKPK 166

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356520804|ref|XP_003529050.1| PREDICTED: uncharacterized protein LOC100812781 [Glycine max]

 Score =  273 bits (699), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 129/166 (77%), Positives = 145/166 (87%)

Query: 1   MEETMKQFQQNLIEIENEAEHLLFARHQLVESDIVRNGNREALTALRKRARTTKTSVISP 60
           M+E MKQFQ+ L E+E EAEHLL ARHQLVE+D +RNGNREALTALRKRARTTK+SV SP
Sbjct: 1   MDENMKQFQKKLTELEVEAEHLLLARHQLVENDRLRNGNREALTALRKRARTTKSSVPSP 60

Query: 61  FESIMKDTGGPGTRPLVKEVCTTCGNHDSNEHTWMMFPGTDVFAKIPFHAAHTILETDQT 120
           FESIMK   G  +RPLV+EVCTTCG HDS+E TWMMFPGTD+FA+IPFHAAHTILETDQT
Sbjct: 61  FESIMKGVAGSSSRPLVQEVCTTCGKHDSSEQTWMMFPGTDLFARIPFHAAHTILETDQT 120

Query: 121 RLDFEAKKLQSYVKEKSLFISEKGALADKISPGVLRSLVTLTDKSK 166
           +LDFE+K+LQS VKEKS  ISE G LADKISPGVL+SLV+L DK K
Sbjct: 121 QLDFESKRLQSIVKEKSYIISEAGVLADKISPGVLKSLVSLNDKPK 166

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723295|ref|NP_001236506.1| uncharacterized protein LOC100306543 [Glycine max] gi|255628833|gb|ACU14761.1| unknown [Glycine max]

 Score =  272 bits (696), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 128/166 (77%), Positives = 145/166 (87%)

Query: 1   MEETMKQFQQNLIEIENEAEHLLFARHQLVESDIVRNGNREALTALRKRARTTKTSVISP 60
           M+E MKQFQ+ L E+E EAEH+L ARHQLVE+D +RNGNREALTALRKRARTTK+SV SP
Sbjct: 1   MDENMKQFQKKLTELEVEAEHILLARHQLVENDRLRNGNREALTALRKRARTTKSSVPSP 60

Query: 61  FESIMKDTGGPGTRPLVKEVCTTCGNHDSNEHTWMMFPGTDVFAKIPFHAAHTILETDQT 120
           FESIMK   G  +RPLV+EVCTTCG HDS+E TWMMFPGTD+FA+IPFHAAHTILETDQT
Sbjct: 61  FESIMKGVAGSSSRPLVQEVCTTCGKHDSSEQTWMMFPGTDLFARIPFHAAHTILETDQT 120

Query: 121 RLDFEAKKLQSYVKEKSLFISEKGALADKISPGVLRSLVTLTDKSK 166
           +LDFE+K+LQS VKEKS  ISE G LADKISPGVL+SLV+L DK K
Sbjct: 121 QLDFESKRLQSIVKEKSYIISEAGVLADKISPGVLKSLVSLNDKPK 166

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297734562|emb|CBI16613.3| unnamed protein product [Vitis vinifera]

 Score =  269 bits (688), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 129/162 (79%), Positives = 142/162 (87%)

Query: 5   MKQFQQNLIEIENEAEHLLFARHQLVESDIVRNGNREALTALRKRARTTKTSVISPFESI 64
           MKQ QQ LIEIE EAE++L ARHQLVE+D VRNGNREALTALRKRARTTKTSV SPFESI
Sbjct: 1   MKQLQQGLIEIEIEAENVLLARHQLVENDRVRNGNREALTALRKRARTTKTSVPSPFESI 60

Query: 65  MKDTGGPGTRPLVKEVCTTCGNHDSNEHTWMMFPGTDVFAKIPFHAAHTILETDQTRLDF 124
           MK+     +RPLVKEVC TCGNHDS E+TW MFPGTDVFA+IPFHAAH+ILE DQ RLD+
Sbjct: 61  MKEIEQLESRPLVKEVCATCGNHDSRENTWTMFPGTDVFARIPFHAAHSILEKDQERLDY 120

Query: 125 EAKKLQSYVKEKSLFISEKGALADKISPGVLRSLVTLTDKSK 166
           +AKKLQSY+KEKS  ISEKG LADKISPG++RSLVTLTDK K
Sbjct: 121 DAKKLQSYLKEKSFLISEKGVLADKISPGIIRSLVTLTDKPK 162

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147776394|emb|CAN72032.1| hypothetical protein VITISV_040543 [Vitis vinifera]

 Score =  269 bits (687), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 131/169 (77%), Positives = 146/169 (86%), Gaps = 3/169 (1%)

Query: 1   MEETMKQFQQNLIEIENEAEHLLFARHQLVESDIVRNGNREALTALRKRARTTKTSVISP 60
           M+E+MKQ QQ LIEIE EAE++L ARHQLVE+D VRNGNREALTALRKRARTTKTSV SP
Sbjct: 1   MDESMKQLQQGLIEIEIEAENVLLARHQLVENDRVRNGNREALTALRKRARTTKTSVPSP 60

Query: 61  FESIMKDTGGPGTRPLVKEVCTTCGNHDSNEHTWMMFPGTDVFAKIPFHAAHTILE---T 117
           FESIMK+     +RPLVKEVC TCGNHDS E+TW MFPGTDVFA+IPFHAAH+ILE    
Sbjct: 61  FESIMKEIEQLESRPLVKEVCATCGNHDSRENTWTMFPGTDVFARIPFHAAHSILEKGNV 120

Query: 118 DQTRLDFEAKKLQSYVKEKSLFISEKGALADKISPGVLRSLVTLTDKSK 166
           DQ RLD++AKKLQSY+KEKS  ISEKG LADKISPG++RSLVTLTDK K
Sbjct: 121 DQERLDYDAKKLQSYLKEKSFLISEKGVLADKISPGMIRSLVTLTDKPK 169

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326524347|dbj|BAK00557.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  251 bits (641), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 113/166 (68%), Positives = 140/166 (84%)

Query: 1   MEETMKQFQQNLIEIENEAEHLLFARHQLVESDIVRNGNREALTALRKRARTTKTSVISP 60
           M+  MKQ Q+ L++IE +AE LL ARH+LV++D +RN NREALTALRKRARTTK+SV SP
Sbjct: 1   MDSNMKQLQEALVDIETDAEQLLLARHELVQNDKMRNANREALTALRKRARTTKSSVPSP 60

Query: 61  FESIMKDTGGPGTRPLVKEVCTTCGNHDSNEHTWMMFPGTDVFAKIPFHAAHTILETDQT 120
           F+ +MK+  G   + LVKE+C+TCGNHD  EHTW+MFPG+D+FA++PFHA HTILE DQ 
Sbjct: 61  FDIVMKEMEGTAGKQLVKEICSTCGNHDPKEHTWLMFPGSDIFARVPFHATHTILEEDQE 120

Query: 121 RLDFEAKKLQSYVKEKSLFISEKGALADKISPGVLRSLVTLTDKSK 166
           RLDF+ KKLQS+VKEKS  ISEKGALADKISPG+++SLV+LTDK K
Sbjct: 121 RLDFDTKKLQSFVKEKSFLISEKGALADKISPGIVKSLVSLTDKPK 166

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357111984|ref|XP_003557790.1| PREDICTED: uncharacterized protein LOC100824728 [Brachypodium distachyon]

 Score =  249 bits (635), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 112/166 (67%), Positives = 138/166 (83%)

Query: 1   MEETMKQFQQNLIEIENEAEHLLFARHQLVESDIVRNGNREALTALRKRARTTKTSVISP 60
           M+  MK  Q+ L++IE +AE LL ARHQLVE+D +RN NREALTALRK+ARTTKTSV SP
Sbjct: 1   MDPNMKHLQETLVDIETDAEQLLLARHQLVENDKMRNANREALTALRKKARTTKTSVPSP 60

Query: 61  FESIMKDTGGPGTRPLVKEVCTTCGNHDSNEHTWMMFPGTDVFAKIPFHAAHTILETDQT 120
           F+ IMK+  G   R L+KE+C TCGNHD  EHTW+MFPG+D+FA++PFH  HTIL+ DQ 
Sbjct: 61  FDVIMKEMEGTSGRELIKEICPTCGNHDPKEHTWLMFPGSDIFARVPFHVTHTILDKDQE 120

Query: 121 RLDFEAKKLQSYVKEKSLFISEKGALADKISPGVLRSLVTLTDKSK 166
           RLD+++KKLQS+VKEKS  ISEKGALADKISPG+++SLV+LTDK K
Sbjct: 121 RLDYDSKKLQSFVKEKSFLISEKGALADKISPGIVKSLVSLTDKPK 166

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357122813|ref|XP_003563109.1| PREDICTED: uncharacterized protein LOC100822618 [Brachypodium distachyon]

 Score =  248 bits (634), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 113/166 (68%), Positives = 139/166 (83%)

Query: 1   MEETMKQFQQNLIEIENEAEHLLFARHQLVESDIVRNGNREALTALRKRARTTKTSVISP 60
           M+  MKQ Q+ L++IE +AE LL ARHQLVE+D +RN NREALTALRKRART+KTSV SP
Sbjct: 1   MDPNMKQLQEALVDIETDAEQLLLARHQLVENDRMRNANREALTALRKRARTSKTSVPSP 60

Query: 61  FESIMKDTGGPGTRPLVKEVCTTCGNHDSNEHTWMMFPGTDVFAKIPFHAAHTILETDQT 120
           FE IMK+  G   + LVKE+C TCGNHD  E+TW+MFPG+D+FA++PFH AHT+L+ DQ 
Sbjct: 61  FEIIMKEMEGSSGKHLVKEICPTCGNHDPKENTWLMFPGSDIFARVPFHVAHTVLDKDQE 120

Query: 121 RLDFEAKKLQSYVKEKSLFISEKGALADKISPGVLRSLVTLTDKSK 166
           RLD++ KKLQS+VKEKS  ISEKGALADKISPG+++SLV+LTDK K
Sbjct: 121 RLDYDTKKLQSFVKEKSFVISEKGALADKISPGIVKSLVSLTDKPK 166

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	166
TAIR|locus:505006349	165	AT3G15351 "AT3G15351" [Arabido	0.987	0.993	0.585	8.8e-47
ZFIN|ZDB-GENE-050417-276	131	zgc:112519 "zgc:112519" [Danio	0.246	0.312	0.390	9.7e-06
UNIPROTKB|Q9NUG6	133	PDRG1 "p53 and DNA damage-regu	0.180	0.225	0.466	0.00093

TAIR|locus:505006349 AT3G15351 "AT3G15351" [Arabidopsis thaliana (taxid:3702)]

 Score = 490 (177.5 bits), Expect = 8.8e-47, P = 8.8e-47
 Identities = 96/164 (58%), Positives = 120/164 (73%)

Query:     1 MEETMKQFQQNLIEIENEAEHLLFARHQLVESDIVRNGNREXXXXXXXXXXXXXXSVISP 60
             M+   K+F   L +IE EA+  L AR+Q+VE+D  RN NRE              SV+SP
Sbjct:     1 MDLDPKKFAALLDKIEAEADEFLLARNQMVENDKERNANREALTALRKRARTTKTSVMSP 60

Query:    61 FESIMKDTGGPGTRPLVKEVCTTCGNHDSNEHTWMMFPGTDVFAKIPFHAAHTILETDQT 120
             F+S+MKD  G  T+PLV+EVC+TCG+HDS+E TWMM PG D+FA IPFHA HT+LE D+ 
Sbjct:    61 FDSMMKDIHGSSTKPLVQEVCSTCGSHDSSEPTWMMLPGADLFAAIPFHAVHTMLEKDEE 120

Query:   121 RLDFEAKKLQSYVKEKSLFISEKGALADKISPGVLRSLVTLTDK 164
             +++FE+KKLQS VKEK+LFISE GALAD ISPGV+RSLV L DK
Sbjct:   121 KMEFESKKLQSLVKEKALFISELGALADGISPGVIRSLVALEDK 164

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-050417-276 zgc:112519 "zgc:112519" [Danio rerio (taxid:7955)]

 Score = 80 (33.2 bits), Expect = 9.7e-06, Sum P(2) = 9.7e-06
 Identities = 16/41 (39%), Positives = 28/41 (68%)

Query:     1 MEETMKQFQQNLIEIENEAEHLLFARHQLVESDIVRNGNRE 41
             M+E+ ++  ++L E+E  AE +L  + Q+V+ D+ RN NRE
Sbjct:     1 MDESAQRVLEHLTEVEVAAEDILTDKQQIVDLDVRRNRNRE 41

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0016272 "prefoldin complex" evidence=IEA

UNIPROTKB|Q9NUG6 PDRG1 "p53 and DNA damage-regulated protein 1" [Homo sapiens (taxid:9606)]

 Score = 68 (29.0 bits), Expect = 0.00093, Sum P(2) = 0.00093
 Identities = 14/30 (46%), Positives = 20/30 (66%)

Query:    12 LIEIENEAEHLLFARHQLVESDIVRNGNRE 41
             L+E+E  AE +L  + Q+V+ D  RN NRE
Sbjct:    13 LVEVEELAEEVLADKRQIVDLDTKRNQNRE 42

GO:0006457 "protein folding" evidence=IEA

GO:0016272 "prefoldin complex" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	166
PF01920	106	Prefoldin_2: Prefoldin subunit; InterPro: IPR00277	99.44
KOG1760	131	consensus Molecular chaperone Prefoldin, subunit 4	99.13
cd00632	105	Prefoldin_beta Prefoldin beta; Prefoldin is a hexa	98.66
COG1382	119	GimC Prefoldin, chaperonin cofactor [Posttranslati	98.54
TIGR02338	110	gimC_beta prefoldin, beta subunit, archaeal. Chape	98.3
PRK03947	140	prefoldin subunit alpha; Reviewed	98.17
cd00890	129	Prefoldin Prefoldin is a hexameric molecular chape	98.12
PRK09343	121	prefoldin subunit beta; Provisional	98.12
TIGR00293	126	prefoldin, archaeal alpha subunit/eukaryotic subun	98.04
cd00584	129	Prefoldin_alpha Prefoldin alpha subunit; Prefoldin	98.03
PRK14011	144	prefoldin subunit alpha; Provisional	97.84
PF02996	120	Prefoldin: Prefoldin subunit; InterPro: IPR004127	97.64
COG1730	145	GIM5 Predicted prefoldin, molecular chaperone impl	97.38
PRK01203	130	prefoldin subunit alpha; Provisional	97.13
KOG3478	120	consensus Prefoldin subunit 6, KE2 family [Posttra	92.69
KOG3313	187	consensus Molecular chaperone Prefoldin, subunit 3	91.13
PRK02224	880	chromosome segregation protein; Provisional	88.87
PRK03918	880	chromosome segregation protein; Provisional	86.68
PRK01156	895	chromosome segregation protein; Provisional	85.91
KOG3048	153	consensus Molecular chaperone Prefoldin, subunit 5	85.16
PF01412	116	ArfGap: Putative GTPase activating protein for Arf	84.5
PF13793	116	Pribosyltran_N: N-terminal domain of ribose phosph	83.38
KOG4098	140	consensus Molecular chaperone Prefoldin, subunit 2	81.92
KOG3501	114	consensus Molecular chaperone Prefoldin, subunit 1	80.85

>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea

Probab=99.44  E-value=6.3e-12  Score=90.95  Aligned_cols=104  Identities=19%  Similarity=0.147  Sum_probs=96.1

Q ss_pred             HHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhHHHHHHHHhhhhhccccccCcchhhhccCCCCCCCcccchhccccCCCC
Q 031062            9 QQNLIEIENEAEHLLFARHQLVESDIVRNGNREALTALRKRARTTKTSVISPFESIMKDTGGPGTRPLVKEVCTTCGNHD   88 (166)
Q Consensus         9 ~~~l~e~E~~ae~vL~~k~qlv~lDk~Rn~nREAl~aL~k~~~~~k~s~~~p~~~~~~~~~~~~~~~~~~~~c~~~g~~d   88 (166)
                      |+.+.++..+..++-...+++..+....+.+..|+..|...                                      +
T Consensus         1 Qe~~~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l--------------------------------------~   42 (106)
T PF01920_consen    1 QELQNKFQELNQQLQQLEQQIQQLERQLRELELTLEELEKL--------------------------------------D   42 (106)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS--------------------------------------S
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------------------------------C
Confidence            45677888999999999999999999999999999999874                                      5


Q ss_pred             CCCceeEEecCCCeeEeechhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-HhhhhhcCh
Q 031062           89 SNEHTWMMFPGTDVFAKIPFHAAHTILETDQTRLDFEAKKLQSYVKEKSLFISEK-GALADKISP  152 (166)
Q Consensus        89 ~dekVWi~~~gGd~FVklP~~~A~e~LEkDQe~lD~EI~kLRseLK~Kv~~L~EL-~~Ly~Kfg~  152 (166)
                      ++.++|..|  |++||+.|.+.+.+.|+.+++.++.+|++|...++.....|.++ +.||.+||.
T Consensus        43 ~~~~~y~~v--G~~fv~~~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~~~~~~  105 (106)
T PF01920_consen   43 DDRKVYKSV--GKMFVKQDKEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLYELFGQ  105 (106)
T ss_dssp             TT-EEEEEE--TTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCS-
T ss_pred             CcchhHHHH--hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            678999999  99999999999999999999999999999999999999999999 999999985

Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.

>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]

Probab=99.13  E-value=1.4e-10  Score=91.18  Aligned_cols=73  Identities=21%  Similarity=0.231  Sum_probs=65.3

Q ss_pred             hccccCCCCCC-CceeEEecCCCeeEeechhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-HhhhhhcChhh
Q 031062           80 VCTTCGNHDSN-EHTWMMFPGTDVFAKIPFHAAHTILETDQTRLDFEAKKLQSYVKEKSLFISEK-GALADKISPGV  154 (166)
Q Consensus        80 ~c~~~g~~d~d-ekVWi~~~gGd~FVklP~~~A~e~LEkDQe~lD~EI~kLRseLK~Kv~~L~EL-~~Ly~Kfg~~v  154 (166)
                      .|--|.=.|++ +.+++.+  |++|+++|.+.+.++||..-++++++|+.|+++++..+.+|.+| ..||+|||..+
T Consensus        52 A~~EieL~Dedd~~Ip~~v--GdvF~~~~~~~~~~~LEe~ke~l~k~i~~les~~e~I~~~m~~LK~~LYaKFgdnI  126 (131)
T KOG1760|consen   52 ASNEIELLDEDDEDIPFKV--GDVFIHVKLDKLQDQLEEKKETLEKEIEELESELESISARMDELKKVLYAKFGDNI  126 (131)
T ss_pred             HHhhHhhcCccccccceeh--hhhheeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            34444444555 7899999  99999999999999999999999999999999999999999999 99999999754

>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea

Probab=98.66  E-value=2.2e-07  Score=69.05  Aligned_cols=93  Identities=17%  Similarity=0.243  Sum_probs=74.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhHHHHHHHHhhhhhccccccCcchhhhccCCCCCCCcccchhccccCCC
Q 031062            8 FQQNLIEIENEAEHLLFARHQLVESDIVRNGNREALTALRKRARTTKTSVISPFESIMKDTGGPGTRPLVKEVCTTCGNH   87 (166)
Q Consensus         8 ~~~~l~e~E~~ae~vL~~k~qlv~lDk~Rn~nREAl~aL~k~~~~~k~s~~~p~~~~~~~~~~~~~~~~~~~~c~~~g~~   87 (166)
                      ++..+..+....+.+...+   -.++-..+.|+-|+..|...                                      
T Consensus         4 ~~~~~q~l~~~~~~l~~~~---~~l~~~~~E~~~v~~EL~~l--------------------------------------   42 (105)
T cd00632           4 QLAQLQQLQQQLQAYIVQR---QKVEAQLNENKKALEELEKL--------------------------------------   42 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHcC--------------------------------------
Confidence            3444444444444444433   34455667777888888764                                      


Q ss_pred             CCCCceeEEecCCCeeEeechhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 031062           88 DSNEHTWMMFPGTDVFAKIPFHAAHTILETDQTRLDFEAKKLQSYVKEKSLFISEK  143 (166)
Q Consensus        88 d~dekVWi~~~gGd~FVklP~~~A~e~LEkDQe~lD~EI~kLRseLK~Kv~~L~EL  143 (166)
                      +++.++|+.+  |++||+.|.+.|...|+...+.++.+|+++.+.++.+...|.++
T Consensus        43 ~~d~~vy~~V--G~vfv~~~~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~el   96 (105)
T cd00632          43 ADDAEVYKLV--GNVLVKQEKEEARTELKERLETIELRIKRLERQEEDLQEKLKEL   96 (105)
T ss_pred             CCcchHHHHh--hhHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6888999999  88999999999999999999999999999999999999999998

Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st

>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]

Probab=98.54  E-value=9.7e-07  Score=68.84  Aligned_cols=110  Identities=14%  Similarity=0.212  Sum_probs=91.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhHHHHHHHHhhhhhccccccCcchhhhccCCCCCCCcccchhc
Q 031062            2 EETMKQFQQNLIEIENEAEHLLFARHQLVESDIVRNGNREALTALRKRARTTKTSVISPFESIMKDTGGPGTRPLVKEVC   81 (166)
Q Consensus         2 ~~~~~~~~~~l~e~E~~ae~vL~~k~qlv~lDk~Rn~nREAl~aL~k~~~~~k~s~~~p~~~~~~~~~~~~~~~~~~~~c   81 (166)
                      .++++..+..+..+..-.+.|++.|+++=      .+-+|+=.||.-                                 
T Consensus         5 pp~~q~~l~q~QqLq~ql~~~~~qk~~le------~qL~E~~~al~E---------------------------------   45 (119)
T COG1382           5 PPEVQAQLAQLQQLQQQLQKVILQKQQLE------AQLKEIEKALEE---------------------------------   45 (119)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHH---------------------------------
Confidence            35677778888888888889998888762      334444444432                                 


Q ss_pred             cccCCCCCCCceeEEecCCCeeEeechhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-HhhhhhcChhh
Q 031062           82 TTCGNHDSNEHTWMMFPGTDVFAKIPFHAAHTILETDQTRLDFEAKKLQSYVKEKSLFISEK-GALADKISPGV  154 (166)
Q Consensus        82 ~~~g~~d~dekVWi~~~gGd~FVklP~~~A~e~LEkDQe~lD~EI~kLRseLK~Kv~~L~EL-~~Ly~Kfg~~v  154 (166)
                        |..-++|.++...+  |++||+.+++.|++-|+.+.+.++.+|+.|++..+....++.+| ..||++||+..
T Consensus        46 --le~l~eD~~vYk~V--G~llvk~~k~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l~~~~  115 (119)
T COG1382          46 --LEKLDEDAPVYKKV--GNLLVKVSKEEAVDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKALGDAA  115 (119)
T ss_pred             --HhcCCcccHHHHHh--hhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence              11237888899999  99999999999999999999999999999999999999999999 99999999853

>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal

Probab=98.30  E-value=1.1e-05  Score=60.51  Aligned_cols=104  Identities=15%  Similarity=0.205  Sum_probs=83.8

Q ss_pred             HHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhHHHHHHHHhhhhhccccccCcchhhhccCCCCCCCcccchhccccCCCC
Q 031062            9 QQNLIEIENEAEHLLFARHQLVESDIVRNGNREALTALRKRARTTKTSVISPFESIMKDTGGPGTRPLVKEVCTTCGNHD   88 (166)
Q Consensus         9 ~~~l~e~E~~ae~vL~~k~qlv~lDk~Rn~nREAl~aL~k~~~~~k~s~~~p~~~~~~~~~~~~~~~~~~~~c~~~g~~d   88 (166)
                      ++.+.++..+-+++=..-+++-.++...+.+.-++..|...                                      +
T Consensus         6 q~~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l--------------------------------------~   47 (110)
T TIGR02338         6 QNQLAQLQQLQQQLQAVATQKQQVEAQLKEAEKALEELERL--------------------------------------P   47 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--------------------------------------C
Confidence            34444444444555555556667777888888888888874                                      5


Q ss_pred             CCCceeEEecCCCeeEeechhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-HhhhhhcCh
Q 031062           89 SNEHTWMMFPGTDVFAKIPFHAAHTILETDQTRLDFEAKKLQSYVKEKSLFISEK-GALADKISP  152 (166)
Q Consensus        89 ~dekVWi~~~gGd~FVklP~~~A~e~LEkDQe~lD~EI~kLRseLK~Kv~~L~EL-~~Ly~Kfg~  152 (166)
                      ++.+++-.+  |.+||+-+.+.|..-|++..+.++..|+.|...++.....+.++ ..|..-++|
T Consensus        48 ~d~~vyk~V--G~vlv~~~~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~~~~  110 (110)
T TIGR02338        48 DDTPVYKSV--GNLLVKTDKEEAIQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQEALAP  110 (110)
T ss_pred             CcchhHHHh--chhhheecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            788899999  88999999999999999999999999999999999999999999 777666554

Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.

>PRK03947 prefoldin subunit alpha; Reviewed

Probab=98.17  E-value=0.00012  Score=56.38  Aligned_cols=123  Identities=13%  Similarity=0.123  Sum_probs=85.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhHHHHHHHHhhhhhccccccCcchhhhccCCCCCCCcccchhcccc
Q 031062            5 MKQFQQNLIEIENEAEHLLFARHQLVESDIVRNGNREALTALRKRARTTKTSVISPFESIMKDTGGPGTRPLVKEVCTTC   84 (166)
Q Consensus         5 ~~~~~~~l~e~E~~ae~vL~~k~qlv~lDk~Rn~nREAl~aL~k~~~~~k~s~~~p~~~~~~~~~~~~~~~~~~~~c~~~   84 (166)
                      ...+.+.+..++.+-+++-.-.+++-.+.......+.++..|..-....     .. ..++-.++         .-|+-=
T Consensus         5 ~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~~l~~~~-----~~-~e~lvplg---------~~~yv~   69 (140)
T PRK03947          5 EQELEELAAQLQALQAQIEALQQQLEELQASINELDTAKETLEELKSKG-----EG-KETLVPIG---------AGSFVK   69 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC-----CC-CeEEEEcC---------CCcEEE
Confidence            3445555555555555555556666667777777777777776532100     00 11221222         123333


Q ss_pred             CCCCCCCceeEEecCCCeeEeechhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 031062           85 GNHDSNEHTWMMFPGTDVFAKIPFHAAHTILETDQTRLDFEAKKLQSYVKEKSLFISEK  143 (166)
Q Consensus        85 g~~d~dekVWi~~~gGd~FVklP~~~A~e~LEkDQe~lD~EI~kLRseLK~Kv~~L~EL  143 (166)
                      |.-.+.++|-+-+ |++.||.++.++|.++|++..+.++..++.+..++..+...+.++
T Consensus        70 ~~v~~~~kV~v~l-G~g~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~  127 (140)
T PRK03947         70 AKVKDKDKVIVSL-GAGYSAEKDLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQL  127 (140)
T ss_pred             EEecCCCeEEEEc-CCCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445677888888 778999999999999999999999999999999999999999887

>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly

Probab=98.12  E-value=0.00017  Score=53.67  Aligned_cols=55  Identities=18%  Similarity=0.279  Sum_probs=51.4

Q ss_pred             CCCCceeEEecCCCeeEeechhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 031062           88 DSNEHTWMMFPGTDVFAKIPFHAAHTILETDQTRLDFEAKKLQSYVKEKSLFISEK  143 (166)
Q Consensus        88 d~dekVWi~~~gGd~FVklP~~~A~e~LEkDQe~lD~EI~kLRseLK~Kv~~L~EL  143 (166)
                      .++++|++.+ |++.||+++.++|.++|++..+.++.+++.+++.++.+..++.++
T Consensus        66 ~~~~~v~v~i-G~~~~ve~~~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l  120 (129)
T cd00890          66 KDDDKVLVDL-GTGVYVEKSLEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITEL  120 (129)
T ss_pred             CCCCEEEEEe-cCCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4677899999 338999999999999999999999999999999999999999998

The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.

>PRK09343 prefoldin subunit beta; Provisional

Probab=98.12  E-value=3.8e-05  Score=59.08  Aligned_cols=99  Identities=15%  Similarity=0.171  Sum_probs=79.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhHHHHHHHHhhhhhccccccCcchhhhccCCCCCCCcccchhcccc
Q 031062            5 MKQFQQNLIEIENEAEHLLFARHQLVESDIVRNGNREALTALRKRARTTKTSVISPFESIMKDTGGPGTRPLVKEVCTTC   84 (166)
Q Consensus         5 ~~~~~~~l~e~E~~ae~vL~~k~qlv~lDk~Rn~nREAl~aL~k~~~~~k~s~~~p~~~~~~~~~~~~~~~~~~~~c~~~   84 (166)
                      +.+++..+.++..+-.++=....++--++...|.|.-++.-|.+.                                   
T Consensus         6 ~~~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L-----------------------------------   50 (121)
T PRK09343          6 PPEVQAQLAQLQQLQQQLERLLQQKSQIDLELREINKALEELEKL-----------------------------------   50 (121)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----------------------------------
Confidence            355666677777777766666666667777777888888888764                                   


Q ss_pred             CCCCCCCceeEEecCCCeeEeechhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 031062           85 GNHDSNEHTWMMFPGTDVFAKIPFHAAHTILETDQTRLDFEAKKLQSYVKEKSLFISEK  143 (166)
Q Consensus        85 g~~d~dekVWi~~~gGd~FVklP~~~A~e~LEkDQe~lD~EI~kLRseLK~Kv~~L~EL  143 (166)
                         +++.+|+-.+  |.+||+-|.+.|..-|++..+.++.+|+.|....+.....+.++
T Consensus        51 ---~~d~~VYk~V--G~vlv~qd~~e~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~  104 (121)
T PRK09343         51 ---PDDTPIYKIV--GNLLVKVDKTKVEKELKERKELLELRSRTLEKQEKKLREKLKEL  104 (121)
T ss_pred             ---CCcchhHHHh--hHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               6788899999  99999999999999999999988888888888888777777766

>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5

Probab=98.04  E-value=0.0002  Score=54.09  Aligned_cols=111  Identities=11%  Similarity=0.081  Sum_probs=74.8

Q ss_pred             HHHHHHHHHhhhHHHHhhhhhhhhHHHHHHHHhhhhhccccccCcchhhhccCCCCCCCcccchhccccCCCCCCCceeE
Q 031062           16 ENEAEHLLFARHQLVESDIVRNGNREALTALRKRARTTKTSVISPFESIMKDTGGPGTRPLVKEVCTTCGNHDSNEHTWM   95 (166)
Q Consensus        16 E~~ae~vL~~k~qlv~lDk~Rn~nREAl~aL~k~~~~~k~s~~~p~~~~~~~~~~~~~~~~~~~~c~~~g~~d~dekVWi   95 (166)
                      +.+-+++=.--+++-++....+..+.++.+|..-.....       ..+|=.++.         ..+.=|.-.+.++|-+
T Consensus         9 ~ql~~~i~~l~~~i~~l~~~i~e~~~~~~~L~~l~~~~~-------~~~lv~lg~---------~~~v~~~v~~~~~v~v   72 (126)
T TIGR00293         9 QILQQQVESLQAQIAALRALIAELETAIETLEDLKGAEG-------KETLVPVGA---------GSFVKAKVKDTDKVLV   72 (126)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCC-------CeEEEEcCC---------CeEEEEEeCCCCEEEE
Confidence            333333333445555666677777777777755311100       111211111         1122233456688999


Q ss_pred             EecCCCeeEeechhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 031062           96 MFPGTDVFAKIPFHAAHTILETDQTRLDFEAKKLQSYVKEKSLFISEK  143 (166)
Q Consensus        96 ~~~gGd~FVklP~~~A~e~LEkDQe~lD~EI~kLRseLK~Kv~~L~EL  143 (166)
                      -+ |++.|+..|.++|.++|++..+.++..++.+...+..+...+..+
T Consensus        73 ~i-G~g~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i  119 (126)
T TIGR00293        73 SI-GSGYYVEKDAEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQL  119 (126)
T ss_pred             Ec-CCCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99 778999999999999999999999999999999999999999887

This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.

>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly

Probab=98.03  E-value=0.00029  Score=53.37  Aligned_cols=58  Identities=17%  Similarity=0.214  Sum_probs=52.0

Q ss_pred             CCCCceeEEecCCCeeEeechhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-Hhh
Q 031062           88 DSNEHTWMMFPGTDVFAKIPFHAAHTILETDQTRLDFEAKKLQSYVKEKSLFISEK-GAL  146 (166)
Q Consensus        88 d~dekVWi~~~gGd~FVklP~~~A~e~LEkDQe~lD~EI~kLRseLK~Kv~~L~EL-~~L  146 (166)
                      .+.+++-+.+ |++.||.+|.++|.+++++..+.++..++++...+..+..++..+ ..+
T Consensus        66 ~~~~~v~v~i-G~g~~vE~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l  124 (129)
T cd00584          66 KDTDKVLVDL-GTGYYVEKDLEEAIEFLDKKIEELTKQIEKLQKELAKLKDQINTLEAEL  124 (129)
T ss_pred             CCCCEEEEEc-CCCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556788888 778999999999999999999999999999999999999999988 444

The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.

>PRK14011 prefoldin subunit alpha; Provisional

Probab=97.84  E-value=0.00085  Score=53.55  Aligned_cols=118  Identities=13%  Similarity=0.171  Sum_probs=86.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhHHHHHHHHhhhhhccccccCcchhhhccCCCCCCCcccchhccccC--
Q 031062            8 FQQNLIEIENEAEHLLFARHQLVESDIVRNGNREALTALRKRARTTKTSVISPFESIMKDTGGPGTRPLVKEVCTTCG--   85 (166)
Q Consensus         8 ~~~~l~e~E~~ae~vL~~k~qlv~lDk~Rn~nREAl~aL~k~~~~~k~s~~~p~~~~~~~~~~~~~~~~~~~~c~~~g--   85 (166)
                      +++.+.+++...+.+=.-.+++-.+..-++...+|..+|....         +-..||              |+-|||  
T Consensus         5 lq~~~~~l~~~~~qie~L~~si~~L~~a~~e~~~~ie~L~~l~---------~~~eiL--------------VPLg~s~y   61 (144)
T PRK14011          5 LQNQFMALEVYNQQVQKLQEELSSIDMMKMELLKSIESMEGLK---------TSEEIL--------------IPLGPGAF   61 (144)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC---------CCCeEE--------------EEcCCCcE
Confidence            4445555666666666666677777777888888888887431         112233              333333  


Q ss_pred             ---CCCCCCceeEEecCCCeeEeechhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-Hhhhhh
Q 031062           86 ---NHDSNEHTWMMFPGTDVFAKIPFHAAHTILETDQTRLDFEAKKLQSYVKEKSLFISEK-GALADK  149 (166)
Q Consensus        86 ---~~d~dekVWi~~~gGd~FVklP~~~A~e~LEkDQe~lD~EI~kLRseLK~Kv~~L~EL-~~Ly~K  149 (166)
                         .-.+.++|-+-+ |++.||..+.++|.+++++..+.+++.+++|...+.++...+.++ ..|-.+
T Consensus        62 V~g~i~d~dkVlVdI-GtGy~VEk~~~eA~~~~~~ri~~l~~~~~~l~~~i~~~~~~~~~l~~~L~~k  128 (144)
T PRK14011         62 LKAKIVDPDKAILGV-GSDIYLEKDVSEVIEDFKKSVEELDKTKKEGNKKIEELNKEITKLRKELEKR  128 (144)
T ss_pred             EeEEecCCCeEEEEc-cCCeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               335667899999 778999999999999999999999999999999999999998888 454443

>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits

Probab=97.64  E-value=0.00086  Score=49.65  Aligned_cols=62  Identities=15%  Similarity=0.225  Sum_probs=55.1

Q ss_pred             ccccCCCCCCCceeEEecCCCeeEeechhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 031062           81 CTTCGNHDSNEHTWMMFPGTDVFAKIPFHAAHTILETDQTRLDFEAKKLQSYVKEKSLFISEK  143 (166)
Q Consensus        81 c~~~g~~d~dekVWi~~~gGd~FVklP~~~A~e~LEkDQe~lD~EI~kLRseLK~Kv~~L~EL  143 (166)
                      ++-.|.-.+.+++-+-+ |.+.|+.+|.++|.++|++....++..+++++..++....++..+
T Consensus        49 ~~v~g~i~~~~~vlV~l-G~~~~vE~s~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~~  110 (120)
T PF02996_consen   49 VFVPGKIPDTDKVLVSL-GAGYYVEMSLEEAIEFLKKRIKELEEQLEKLEKELAELQAQIEQL  110 (120)
T ss_dssp             EEEEEE-SSTTEEEEEE-ETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred             eEEEEEeCCCCEEEEEe-eCCeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556677888899999 677999999999999999999999999999999999999999877

Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.

>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]

Probab=97.38  E-value=0.0093  Score=47.90  Aligned_cols=133  Identities=15%  Similarity=0.180  Sum_probs=92.9

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhHHHHHHHHhhhhhcc-ccccCcchhhhccCCCCCCCcccch
Q 031062            1 MEETMKQFQQNLIEIENEAEHLLFARHQLVESDIVRNGNREALTALRKRARTTK-TSVISPFESIMKDTGGPGTRPLVKE   79 (166)
Q Consensus         1 m~~~~~~~~~~l~e~E~~ae~vL~~k~qlv~lDk~Rn~nREAl~aL~k~~~~~k-~s~~~p~~~~~~~~~~~~~~~~~~~   79 (166)
                      |+...+.+.+...++..+-+.|=.-++++-.+....+..|+|+-.|+....-.. .-+.-|       |+    .-+   
T Consensus         1 m~~~~~~le~l~a~lq~l~~qie~L~~~i~~l~~~~~e~~~~~~tl~~lk~~~~g~E~LVp-------vG----ag~---   66 (145)
T COG1730           1 MAQTQQELEELAAQLQILQSQIESLQAQIAALNAAISELQTAIETLENLKGAGEGKEVLVP-------VG----AGL---   66 (145)
T ss_pred             CCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEE-------cC----CCc---
Confidence            444444455555555555555556688999999999999999999987532210 011111       11    111   


Q ss_pred             hccccCCCCCCCceeEEecCCCeeEeechhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhc
Q 031062           80 VCTTCGNHDSNEHTWMMFPGTDVFAKIPFHAAHTILETDQTRLDFEAKKLQSYVKEKSLFISEKGALADKI  150 (166)
Q Consensus        80 ~c~~~g~~d~dekVWi~~~gGd~FVklP~~~A~e~LEkDQe~lD~EI~kLRseLK~Kv~~L~EL~~Ly~Kf  150 (166)
                        |.=|+-.+.+++-+-+ |+...+..+.+.|.++|++..+.|++.+.++...+.+...++..+.......
T Consensus        67 --fv~~kv~~~~kviV~i-Gsg~~ae~~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~  134 (145)
T COG1730          67 --FVKAKVKDMDKVIVSI-GSGYYAEKSADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQL  134 (145)
T ss_pred             --eEEEEeccCceEEEEc-CCceeeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              1122234558899999 6679999999999999999999999999999999999999998885544433

>PRK01203 prefoldin subunit alpha; Provisional

Probab=97.13  E-value=0.018  Score=45.65  Aligned_cols=102  Identities=12%  Similarity=0.071  Sum_probs=71.9

Q ss_pred             hhhHHHHhhhhhhhhHHHHHHHHhhhhhccccccCcchhhhccCCCCCCCcccchhccccCCCCCCCceeEEecCCCeeE
Q 031062           25 ARHQLVESDIVRNGNREALTALRKRARTTKTSVISPFESIMKDTGGPGTRPLVKEVCTTCGNHDSNEHTWMMFPGTDVFA  104 (166)
Q Consensus        25 ~k~qlv~lDk~Rn~nREAl~aL~k~~~~~k~s~~~p~~~~~~~~~~~~~~~~~~~~c~~~g~~d~dekVWi~~~gGd~FV  104 (166)
                      -++|+=.+..-++...+|+.+|......+...+.-|       ++++.         +-=|.-.+.++|-+-+ |+..||
T Consensus        19 l~~ql~~L~~a~se~~~~ie~L~~~~~~~~~eiLVP-------Lg~sl---------YV~gki~d~~kVlVdI-GTGy~V   81 (130)
T PRK01203         19 VDSQIDSLNKTLSEVQQTISFLSDNELDNSKELLIS-------IGSGI---------FADGNIKKDKDLIVPI-GSGVYI   81 (130)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccccCCCCeEEEE-------ccCCc---------eEeEEecCCCeEEEEc-CCCeEE
Confidence            355555666666777778888876321111222222       22111         1113345677899999 777999


Q ss_pred             eechhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 031062          105 KIPFHAAHTILETDQTRLDFEAKKLQSYVKEKSLFISEK  143 (166)
Q Consensus       105 klP~~~A~e~LEkDQe~lD~EI~kLRseLK~Kv~~L~EL  143 (166)
                      ..+.+++.++|++.+++++.-|...+..++.....+++|
T Consensus        82 EK~~e~kie~L~~~ie~Le~~i~~K~~~l~~i~~~~~~l  120 (130)
T PRK01203         82 AEERERTIERLKENLEDLKDSIQKLNDQRKTLVDQYNTV  120 (130)
T ss_pred             EecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999888888887

>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]

Probab=92.69  E-value=2.2  Score=33.58  Aligned_cols=54  Identities=13%  Similarity=0.237  Sum_probs=49.7

Q ss_pred             CCCCceeEEecCCCeeEeechhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 031062           88 DSNEHTWMMFPGTDVFAKIPFHAAHTILETDQTRLDFEAKKLQSYVKEKSLFISEK  143 (166)
Q Consensus        88 d~dekVWi~~~gGd~FVklP~~~A~e~LEkDQe~lD~EI~kLRseLK~Kv~~L~EL  143 (166)
                      ++|.+|+=.|  |.++|+-..+.|..-..+..+-|++||.++.+.++....++..-
T Consensus        49 e~d~~VYKli--GpvLvkqel~EAr~nV~kRlefI~~Eikr~e~~i~d~q~e~~k~  102 (120)
T KOG3478|consen   49 EEDSNVYKLI--GPVLVKQELEEARTNVGKRLEFISKEIKRLENQIRDSQEEFEKQ  102 (120)
T ss_pred             cccchHHHHh--cchhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6788898899  99999999999999999999999999999999999988887655

>KOG3313 consensus Molecular chaperone Prefoldin, subunit 3 [Posttranslational modification, protein turnover, chaperones]

Probab=91.13  E-value=8.4  Score=32.48  Aligned_cols=121  Identities=12%  Similarity=0.113  Sum_probs=72.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhHHHHHHHHhhhhhccccccCcchhhhccCCCCCCCcccchhcccc
Q 031062            5 MKQFQQNLIEIENEAEHLLFARHQLVESDIVRNGNREALTALRKRARTTKTSVISPFESIMKDTGGPGTRPLVKEVCTTC   84 (166)
Q Consensus         5 ~~~~~~~l~e~E~~ae~vL~~k~qlv~lDk~Rn~nREAl~aL~k~~~~~k~s~~~p~~~~~~~~~~~~~~~~~~~~c~~~   84 (166)
                      .+++++.+.+.-..+..+++.+..+-.-=.-=-.+=|-++-|++.. ....|+.+-|.       -+.  .+   -|..|
T Consensus        39 l~~~~E~~~kYkfme~~l~a~~~~l~~kIPd~entLeiv~~l~~~~-~~~~s~~t~f~-------lsd--~v---y~ka~  105 (187)
T KOG3313|consen   39 LKKLQERYGKYKFMEASLLAQKRRLKTKIPDIENTLEIVQTLIAKK-DEGESFETTFL-------LSD--GV---YTKAS  105 (187)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhCc-ccCcceeEEEE-------ecc--cc---eeeee
Confidence            4677788888888888888777665432111122445566666541 11111111111       000  00   12222


Q ss_pred             CCCCCCCceeEEecCCCeeEeechhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 031062           85 GNHDSNEHTWMMFPGTDVFAKIPFHAAHTILETDQTRLDFEAKKLQSYVKEKSLFIS  141 (166)
Q Consensus        85 g~~d~dekVWi~~~gGd~FVklP~~~A~e~LEkDQe~lD~EI~kLRseLK~Kv~~L~  141 (166)
                      -  .+.++|-+-+ |.++++..|-+.|.++|.++.....+..+.+..++.-.-.+..
T Consensus       106 V--~~~~kV~LWL-GAnVMlEY~leEAeaLLkknl~sa~k~l~~~~~DldfLrdQvT  159 (187)
T KOG3313|consen  106 V--PPTDKVYLWL-GANVMLEYDLEEAEALLKKNLTSAVKSLDVLEEDLDFLRDQVT  159 (187)
T ss_pred             c--CCcCeEEEEe-cceeEEEecHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhce
Confidence            2  4555677777 8899999999999999999988888877777777665554443

>PRK02224 chromosome segregation protein; Provisional

Probab=88.87  E-value=7.9  Score=37.58  Aligned_cols=15  Identities=20%  Similarity=0.496  Sum_probs=10.3

Q ss_pred             cchhccccCCCCCCC
Q 031062           77 VKEVCTTCGNHDSNE   91 (166)
Q Consensus        77 ~~~~c~~~g~~d~de   91 (166)
                      ...+|++||.+=+++
T Consensus       450 ~~~~Cp~C~r~~~~~  464 (880)
T PRK02224        450 EAGKCPECGQPVEGS  464 (880)
T ss_pred             hcccCCCCCCcCCCc
Confidence            346899999755444

>PRK03918 chromosome segregation protein; Provisional

Probab=86.68  E-value=15  Score=35.40  Aligned_cols=49  Identities=16%  Similarity=0.253  Sum_probs=27.4

Q ss_pred             hccccCCCCCCCceeEEecCCCeeEeechhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 031062           80 VCTTCGNHDSNEHTWMMFPGTDVFAKIPFHAAHTILETDQTRLDFEAKKLQSYVKEKSLFISEK  143 (166)
Q Consensus        80 ~c~~~g~~d~dekVWi~~~gGd~FVklP~~~A~e~LEkDQe~lD~EI~kLRseLK~Kv~~L~EL  143 (166)
                      +|++|+.+=.++               .......-++..++.++.+|..++.+++.....+..+
T Consensus       437 ~Cp~c~~~L~~~---------------~~~el~~~~~~ei~~l~~~~~~l~~~~~~l~~~~~~~  485 (880)
T PRK03918        437 KCPVCGRELTEE---------------HRKELLEEYTAELKRIEKELKEIEEKERKLRKELREL  485 (880)
T ss_pred             CCCCCCCcCCch---------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            788888543332               2223334556666666666666666665555444433

>PRK01156 chromosome segregation protein; Provisional

Probab=85.91  E-value=14  Score=36.19  Aligned_cols=49  Identities=20%  Similarity=0.380  Sum_probs=26.3

Q ss_pred             hhccccCCCCCCCceeEEecCCCeeEeechhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 031062           79 EVCTTCGNHDSNEHTWMMFPGTDVFAKIPFHAAHTILETDQTRLDFEAKKLQSYVKEKSLFISE  142 (166)
Q Consensus        79 ~~c~~~g~~d~dekVWi~~~gGd~FVklP~~~A~e~LEkDQe~lD~EI~kLRseLK~Kv~~L~E  142 (166)
                      .+|++||.....+..               .....-++.....+..+|+.|..+++.....+..
T Consensus       453 ~~Cp~c~~~~~~e~~---------------~e~i~~~~~~i~~l~~~i~~l~~~~~~l~~~~~~  501 (895)
T PRK01156        453 SVCPVCGTTLGEEKS---------------NHIINHYNEKKSRLEEKIREIEIEVKDIDEKIVD  501 (895)
T ss_pred             CCCCCCCCcCChhhH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            489999987764411               1223334455555555555555555444444433

>KOG3048 consensus Molecular chaperone Prefoldin, subunit 5 [Posttranslational modification, protein turnover, chaperones]

Probab=85.16  E-value=7.2  Score=31.95  Aligned_cols=65  Identities=17%  Similarity=0.229  Sum_probs=55.2

Q ss_pred             CCCCCCCceeEEecCCCeeEeechhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-Hhhhhhc
Q 031062           85 GNHDSNEHTWMMFPGTDVFAKIPFHAAHTILETDQTRLDFEAKKLQSYVKEKSLFISEK-GALADKI  150 (166)
Q Consensus        85 g~~d~dekVWi~~~gGd~FVklP~~~A~e~LEkDQe~lD~EI~kLRseLK~Kv~~L~EL-~~Ly~Kf  150 (166)
                      |.-++.+++.+-| |..-||.-..++|+.+..+..+.+.++|+.++.-+++|...-... .++-+|.
T Consensus        77 Gkl~d~~k~lVDI-GTGYyVEK~~e~akdyfkRKve~l~kq~e~i~~i~~eK~~~~~~v~~v~q~Kv  142 (153)
T KOG3048|consen   77 GKLSDNSKFLVDI-GTGYYVEKDAEDAKDYFKRKVEYLTKQIEQIEGILKEKTRTRASVMDVLQAKV  142 (153)
T ss_pred             ceeccccceeEec-cCceEEeechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4456788999999 556899999999999999999999999999999999998877666 5554443

>PF01412 ArfGap: Putative GTPase activating protein for Arf; InterPro: IPR001164 This entry describes a family of small GTPase activating proteins, for example ARF1-directed GTPase-activating protein, the cycle control GTPase activating protein (GAP) GCS1 which is important for the regulation of the ADP ribosylation factor ARF, a member of the Ras superfamily of GTP-binding proteins []

Probab=84.50  E-value=1.4  Score=33.31  Aligned_cols=34  Identities=26%  Similarity=0.603  Sum_probs=22.7

Q ss_pred             hhccccCCCCCCCceeEEecCCCeeEeechhHHHHHHH
Q 031062           79 EVCTTCGNHDSNEHTWMMFPGTDVFAKIPFHAAHTILE  116 (166)
Q Consensus        79 ~~c~~~g~~d~dekVWi~~~gGd~FVklP~~~A~e~LE  116 (166)
                      .+|+-||..++   .|+.+.= -+||.+.-..+|.-|-
T Consensus        14 ~~CaDCg~~~p---~w~s~~~-GiflC~~Cag~HR~lg   47 (116)
T PF01412_consen   14 KVCADCGAPNP---TWASLNY-GIFLCLECAGIHRSLG   47 (116)
T ss_dssp             TB-TTT-SBS-----EEETTT-TEEE-HHHHHHHHHHT
T ss_pred             CcCCCCCCCCC---CEEEeec-ChhhhHHHHHHHHHhc
Confidence            48999996554   9999741 2999999888888775

The GTP-bound form of ARF is essential for the maintenance of normal Golgi morphology, it participates in recruitment of coat proteins which are required for budding and fission of membranes. Before the fusion with an acceptor compartment the membrane must be uncoated. This step required the hydrolysis of GTP associated to ARF. These proteins contain a characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) which displays some similarity to the C4-type GATA zinc finger. The ARFGAP domain display no obvious similarity to other GAP proteins. The 3D structure of the ARFGAP domain of the PYK2-associated protein beta has been solved []. It consists of a three-stranded beta-sheet surrounded by 5 alpha helices. The domain is organised around a central zinc atom which is coordinated by 4 cysteines. The ARFGAP domain is clearly unrelated to the other GAP proteins structures which are exclusively helical. Classical GAP proteins accelerate GTPase activity by supplying an arginine finger to the active site. The crystal structure of ARFGAP bound to ARF revealed that the ARFGAP domain does not supply an arginine to the active site which suggests a more indirect role of the ARFGAP domain in the GTPase hydrolysis []. The Rev protein of human immunodeficiency virus type 1 (HIV-1) facilitates nuclear export of unspliced and partly-spliced viral RNAs []. Rev contains an RNA-binding domain and an effector domain; the latter is believed to interact with a cellular cofactor required for the Rev response and hence HIV-1 replication. Human Rev interacting protein (hRIP) specifically interacts with the Rev effector. The amino acid sequence of hRIP is characterised by an N-terminal, C-4 class zinc finger motif.; GO: 0008060 ARF GTPase activator activity, 0008270 zinc ion binding, 0032312 regulation of ARF GTPase activity; PDB: 2P57_A 2CRR_A 2OWA_B 3O47_B 3DWD_A 1DCQ_A 2CRW_A 3MDB_D 3FEH_A 3LJU_X ....

>PF13793 Pribosyltran_N: N-terminal domain of ribose phosphate pyrophosphokinase; PDB: 2JI4_A 1DKU_B 1IBS_B 1DKR_B 3MBI_C 3LRT_B 3LPN_B 3NAG_B 2H07_B 2H06_B

Probab=83.38  E-value=0.27  Score=37.55  Aligned_cols=43  Identities=19%  Similarity=0.300  Sum_probs=33.1

Q ss_pred             hccCCCCCCCcccchhccccCCCCCCCceeEEecCCCeeEeech
Q 031062           65 MKDTGGPGTRPLVKEVCTTCGNHDSNEHTWMMFPGTDVFAKIPF  108 (166)
Q Consensus        65 ~~~~~~~~~~~~~~~~c~~~g~~d~dekVWi~~~gGd~FVklP~  108 (166)
                      |+=+.|+++.+|-+.||..+|-.- ..-.|-.||+|+++++++.
T Consensus         1 m~I~~g~~~~~La~~ia~~L~~~~-~~~~~~~F~dGE~~v~i~~   43 (116)
T PF13793_consen    1 MVIFSGSSSQDLAERIAEALGIPL-GKVETKRFPDGETYVRIPE   43 (116)
T ss_dssp             EEEEESSSGHHHHHHHHHHTTS-E-E-EEEEE-TTS-EEEEESS
T ss_pred             CEEEECCCCHHHHHHHHHHhCCce-eeeEEEEcCCCCEEEEecc
Confidence            455789999999999999998644 3457888999999999876

...

>KOG4098 consensus Molecular chaperone Prefoldin, subunit 2 [Posttranslational modification, protein turnover, chaperones]

Probab=81.92  E-value=15  Score=29.67  Aligned_cols=54  Identities=19%  Similarity=0.258  Sum_probs=49.3

Q ss_pred             CCCCceeEEecCCCeeEeechhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 031062           88 DSNEHTWMMFPGTDVFAKIPFHAAHTILETDQTRLDFEAKKLQSYVKEKSLFISEK  143 (166)
Q Consensus        88 d~dekVWi~~~gGd~FVklP~~~A~e~LEkDQe~lD~EI~kLRseLK~Kv~~L~EL  143 (166)
                      |++.|.+=++  |.++|.-....+...|+..++.|+.-|+.|-+.+..+-.+|.+-
T Consensus        59 dp~RKCfRmI--gGvLVErTVkeVlP~L~~nke~i~~~i~~l~~qL~~k~kElnkf  112 (140)
T KOG4098|consen   59 DPTRKCFRMI--GGVLVERTVKEVLPILQTNKENIEKVIKKLTDQLVQKGKELNKF  112 (140)
T ss_pred             ChhhHHHHHh--ccchhhhhHHHHhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6777777889  77999999999999999999999999999999999999888765

>KOG3501 consensus Molecular chaperone Prefoldin, subunit 1 [Posttranslational modification, protein turnover, chaperones]

Probab=80.85  E-value=1.4  Score=34.38  Aligned_cols=48  Identities=15%  Similarity=0.048  Sum_probs=37.5

Q ss_pred             ceeEEecCCCeeEeechhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 031062           92 HTWMMFPGTDVFAKIPFHAAHTILETDQTRLDFEAKKLQSYVKEKSLFIS  141 (166)
Q Consensus        92 kVWi~~~gGd~FVklP~~~A~e~LEkDQe~lD~EI~kLRseLK~Kv~~L~  141 (166)
                      +++-.+  |.||+.-|....+.-++..++..+..|+.|+..-.=.....+
T Consensus        51 ~~Y~sv--grmF~l~dk~a~~s~leak~k~see~IeaLqkkK~YlEk~v~   98 (114)
T KOG3501|consen   51 AVYTSV--GRMFMLSDKAAVRSHLEAKMKSSEEKIEALQKKKTYLEKTVS   98 (114)
T ss_pred             HHHHHH--HHHHHcCcHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            455558  999999999999999999999999999988765443333333

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	166
2zqm_A	117	Prefoldin beta subunit 1; chaperone; HET: CIT; 1.9	99.26
1fxk_A	107	Prefoldin; archaeal protein, chaperone; 2.30A {Met	99.23
2zdi_C	151	Prefoldin subunit alpha; chaperone, cytoplasm; 3.0	98.07
1fxk_C	133	Protein (prefoldin); archaeal protein, chaperone;	98.05
1l8d_A	112	DNA double-strand break repair RAD50 ATPase; zinc	96.53
3aei_A	99	Prefoldin beta subunit 2; double helix, coiled coi	93.78
2l5g_B	42	Putative uncharacterized protein NCOR2, G protein	81.37

>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A

Probab=99.26  E-value=2.3e-10  Score=83.77  Aligned_cols=107  Identities=15%  Similarity=0.166  Sum_probs=92.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhHHHHHHHHhhhhhccccccCcchhhhccCCCCCCCcccchhccccC
Q 031062            6 KQFQQNLIEIENEAEHLLFARHQLVESDIVRNGNREALTALRKRARTTKTSVISPFESIMKDTGGPGTRPLVKEVCTTCG   85 (166)
Q Consensus         6 ~~~~~~l~e~E~~ae~vL~~k~qlv~lDk~Rn~nREAl~aL~k~~~~~k~s~~~p~~~~~~~~~~~~~~~~~~~~c~~~g   85 (166)
                      ..+++.+.++..+-..+-...+++-.+....+.+..|+..|...                                    
T Consensus         6 ~e~Q~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~l------------------------------------   49 (117)
T 2zqm_A            6 PQVQAMLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEIESL------------------------------------   49 (117)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC------------------------------------
Confidence            44556666666666666666777777788888888888888864                                    


Q ss_pred             CCCCCCceeEEecCCCeeEeechhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-HhhhhhcCh
Q 031062           86 NHDSNEHTWMMFPGTDVFAKIPFHAAHTILETDQTRLDFEAKKLQSYVKEKSLFISEK-GALADKISP  152 (166)
Q Consensus        86 ~~d~dekVWi~~~gGd~FVklP~~~A~e~LEkDQe~lD~EI~kLRseLK~Kv~~L~EL-~~Ly~Kfg~  152 (166)
                        +++.+||+.+  |++||+.|.+.|.+.|++..+.++.+|+.|...++.+...|.++ ..||++|++
T Consensus        50 --~~d~~vy~~i--G~vfv~~~~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~~~~  113 (117)
T 2zqm_A           50 --PDDAVVYKTV--GTLIVKTTKDKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSALRP  113 (117)
T ss_dssp             --CTTCCEEEEE--TTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             --CCCcHhHHHh--hHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence              6778899999  88999999999999999999999999999999999999999999 999999986

>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B

Probab=99.23  E-value=4.8e-10  Score=81.02  Aligned_cols=101  Identities=10%  Similarity=0.140  Sum_probs=82.6

Q ss_pred             HHHHHHHHHHHHHHhhhHHHHhhhhhhhhHHHHHHHHhhhhhccccccCcchhhhccCCCCCCCcccchhccccCCCCCC
Q 031062           11 NLIEIENEAEHLLFARHQLVESDIVRNGNREALTALRKRARTTKTSVISPFESIMKDTGGPGTRPLVKEVCTTCGNHDSN   90 (166)
Q Consensus        11 ~l~e~E~~ae~vL~~k~qlv~lDk~Rn~nREAl~aL~k~~~~~k~s~~~p~~~~~~~~~~~~~~~~~~~~c~~~g~~d~d   90 (166)
                      .+.+.-.+-.++-...+++=.+....+.+..|+..|...                                      +++
T Consensus         6 ~i~~f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~~l--------------------------------------~~d   47 (107)
T 1fxk_A            6 QLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRA--------------------------------------ADD   47 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--------------------------------------CTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--------------------------------------CCC
Confidence            333333333444444445555667777777888888764                                      678


Q ss_pred             CceeEEecCCCeeEeechhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-HhhhhhcC
Q 031062           91 EHTWMMFPGTDVFAKIPFHAAHTILETDQTRLDFEAKKLQSYVKEKSLFISEK-GALADKIS  151 (166)
Q Consensus        91 ekVWi~~~gGd~FVklP~~~A~e~LEkDQe~lD~EI~kLRseLK~Kv~~L~EL-~~Ly~Kfg  151 (166)
                      .++|..+  |++||+.|.+.|.+.|++..+.++.+|+.|...++.+...|.++ ..||++|+
T Consensus        48 ~~vy~~i--G~vfv~~~~~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l~~~~~  107 (107)
T 1fxk_A           48 AEVYKSS--GNILIRVAKDELTEELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQEAMK  107 (107)
T ss_dssp             CCEEEEE--TTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             chHHHHH--hHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            8899999  88999999999999999999999999999999999999999999 99999995

>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}

Probab=98.07  E-value=4.7e-05  Score=58.55  Aligned_cols=125  Identities=18%  Similarity=0.134  Sum_probs=93.0

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhHHHHHHHHhhhhhccccccCcchhhhccCCCCCCCcccchh
Q 031062            1 MEETMKQFQQNLIEIENEAEHLLFARHQLVESDIVRNGNREALTALRKRARTTKTSVISPFESIMKDTGGPGTRPLVKEV   80 (166)
Q Consensus         1 m~~~~~~~~~~l~e~E~~ae~vL~~k~qlv~lDk~Rn~nREAl~aL~k~~~~~k~s~~~p~~~~~~~~~~~~~~~~~~~~   80 (166)
                      |.+.++++.+.+..++...+.+...++++-.-..+-+.+.+|+..|.....       .+ ..+|..++++.        
T Consensus         7 ~~~~l~ql~~~~qql~~~~~~l~~~~~~L~~a~~~~~e~~~~l~~l~~l~~-------~~-~~ilvplg~~~--------   70 (151)
T 2zdi_C            7 NNKELEKLAYEYQVLQAQAQILAQNLELLNLAKAEVQTVRETLENLKKIEE-------EK-PEILVPIGAGS--------   70 (151)
T ss_dssp             STTHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC-------SS-CEEEEECSSSC--------
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-------CC-ceEEEEcCCCe--------
Confidence            356677888888888888888888777775557777888888888876410       11 12443333322        


Q ss_pred             ccccCCCCCCCceeEEecCCCeeEeechhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 031062           81 CTTCGNHDSNEHTWMMFPGTDVFAKIPFHAAHTILETDQTRLDFEAKKLQSYVKEKSLFISEK  143 (166)
Q Consensus        81 c~~~g~~d~dekVWi~~~gGd~FVklP~~~A~e~LEkDQe~lD~EI~kLRseLK~Kv~~L~EL  143 (166)
                       +-=|.-.+.++|.+-+ |.+.||..+.++|.++|++..+.++..++.++..+..+...+..+
T Consensus        71 -yv~g~i~~~~~V~v~l-G~g~~vE~~~~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~  131 (151)
T 2zdi_C           71 -FLKGVIVDKNNAIVSV-GSGYAVERSIDEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEV  131 (151)
T ss_dssp             -EEEEECSCTTEEEEEE-ETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred             -EEEEEECCCCEEEEEe-CCCeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             1113345667799999 447999999999999999999999999999999999999888776

>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1

Probab=98.05  E-value=0.00014  Score=54.33  Aligned_cols=120  Identities=10%  Similarity=0.077  Sum_probs=82.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhHHHHHHHHhhhhhccccccCcchhhhccCCCCCCCcccchhccc
Q 031062            4 TMKQFQQNLIEIENEAEHLLFARHQLVESDIVRNGNREALTALRKRARTTKTSVISPFESIMKDTGGPGTRPLVKEVCTT   83 (166)
Q Consensus         4 ~~~~~~~~l~e~E~~ae~vL~~k~qlv~lDk~Rn~nREAl~aL~k~~~~~k~s~~~p~~~~~~~~~~~~~~~~~~~~c~~   83 (166)
                      .++++++.+..++...+.+...++++   ....+..++|+.+|..-...      .+. .+|-.++++         .+-
T Consensus         2 ~~~~l~~~~q~l~~~~~~l~~~~~~l---~~~i~e~~~~~e~l~~l~~~------~~~-~~lvplg~~---------~yv   62 (133)
T 1fxk_C            2 ALAEIVAQLNIYQSQVELIQQQMEAV---RATISELEILEKTLSDIQGK------DGS-ETLVPVGAG---------SFI   62 (133)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTTC------TTC-EEEEEEETT---------EEE
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcccC------CCC-eEEEEcCCC---------cEE
Confidence            35677777777777777776666655   45556666667666654210      010 122111111         122


Q ss_pred             cCCCCCCCceeEEecCCCeeEeechhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 031062           84 CGNHDSNEHTWMMFPGTDVFAKIPFHAAHTILETDQTRLDFEAKKLQSYVKEKSLFISEK  143 (166)
Q Consensus        84 ~g~~d~dekVWi~~~gGd~FVklP~~~A~e~LEkDQe~lD~EI~kLRseLK~Kv~~L~EL  143 (166)
                      =|.-.+.++|.+-+ |.+.||..|.++|.++|++..+.++..++.++..+..+..++..+
T Consensus        63 ~a~i~~~~~V~v~l-G~g~~vE~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~  121 (133)
T 1fxk_C           63 KAELKDTSEVIMSV-GAGVAIKKNFEDAMESIKSQKNELESTLQKMGENLRAITDIMMKL  121 (133)
T ss_dssp             EEECCSTTEEEEEE-ETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEECCCCEEEEEc-CCCEEEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            23345667799999 336999999999999999999999999999999999998888777

>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1

Probab=96.53  E-value=0.035  Score=39.97  Aligned_cols=90  Identities=14%  Similarity=0.063  Sum_probs=56.4

Q ss_pred             HHHHHHHHHhhhHHHHhhhhhhhhHHHHHHHHhhhhhccccccCcchhhhccCCCCCCCcccchhccccCCCCCCCceeE
Q 031062           16 ENEAEHLLFARHQLVESDIVRNGNREALTALRKRARTTKTSVISPFESIMKDTGGPGTRPLVKEVCTTCGNHDSNEHTWM   95 (166)
Q Consensus        16 E~~ae~vL~~k~qlv~lDk~Rn~nREAl~aL~k~~~~~k~s~~~p~~~~~~~~~~~~~~~~~~~~c~~~g~~d~dekVWi   95 (166)
                      +.+.+.+-..+..+.++...-.....++..|.+                            ...+|++||..-..     
T Consensus        13 ~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~----------------------------~g~~CPvCgs~l~~-----   59 (112)
T 1l8d_A           13 TTIEEERNEITQRIGELKNKIGDLKTAIEELKK----------------------------AKGKCPVCGRELTD-----   59 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----------------------------CSEECTTTCCEECH-----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----------------------------CCCCCCCCCCcCCH-----
Confidence            333444444455556665555555556655533                            13579999953221     


Q ss_pred             EecCCCeeEeechhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhh
Q 031062           96 MFPGTDVFAKIPFHAAHTILETDQTRLDFEAKKLQSYVKEKSLFISEKGALAD  148 (166)
Q Consensus        96 ~~~gGd~FVklP~~~A~e~LEkDQe~lD~EI~kLRseLK~Kv~~L~EL~~Ly~  148 (166)
                                -.......-++..+..+..+|..|+..+......+.+|..-|.
T Consensus        60 ----------~~~~~~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~  102 (112)
T 1l8d_A           60 ----------EHREELLSKYHLDLNNSKNTLAKLIDRKSELERELRRIDMEIK  102 (112)
T ss_dssp             ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                      1123445667778888888888888888888888888855555

>3aei_A Prefoldin beta subunit 2; double helix, coiled coil, chaperone; 1.70A {Thermococcus SP}

Probab=93.78  E-value=0.37  Score=35.12  Aligned_cols=54  Identities=22%  Similarity=0.218  Sum_probs=49.2

Q ss_pred             CCCCceeEEecCCCeeEeechhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 031062           88 DSNEHTWMMFPGTDVFAKIPFHAAHTILETDQTRLDFEAKKLQSYVKEKSLFISEK  143 (166)
Q Consensus        88 d~dekVWi~~~gGd~FVklP~~~A~e~LEkDQe~lD~EI~kLRseLK~Kv~~L~EL  143 (166)
                      ..+.+.+-.|  .|.+|.+..+.|.+-++.---....||++|+..-|+....|+-|
T Consensus        41 k~er~~yraf--~dllveitkdeaiehier~rl~ykreie~l~~~ekeime~ls~l   94 (99)
T 3aei_A           41 KSERRIYRAF--SDLLVEITKDEAIEHIERSRLVYKREIEKLKKREKEIMEELSKL   94 (99)
T ss_dssp             CSCCCEEEEE--TTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHH--HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3566788889  99999999999999999999999999999999999998888776

>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}

Probab=81.37  E-value=4.1  Score=25.92  Aligned_cols=34  Identities=15%  Similarity=0.075  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhh
Q 031062          115 LETDQTRLDFEAKKLQSYVKEKSLFISEKGALAD  148 (166)
Q Consensus       115 LEkDQe~lD~EI~kLRseLK~Kv~~L~EL~~Ly~  148 (166)
                      |-+.+..+|.||.+.++.+-+...++.+|+..+.
T Consensus         7 l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee~a~   40 (42)
T 2l5g_B            7 LIQNMDRVDREITMVEQQISKLKKKQQQLEEEAA   40 (42)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            4567888999999999999999999999955443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	166
d1fxka_	107	Prefoldin beta subunit {Archaeon Methanobacterium	98.43
d1fxkc_	133	Prefoldin alpha subunit {Archaeon Methanobacterium	98.09
d1dcqa2	122	Pyk2-associated protein beta ARF-GAP domain {Mouse	85.87

>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Prefoldin
family: Prefoldin
domain: Prefoldin beta subunit
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.43  E-value=4.2e-06  Score=59.60  Aligned_cols=97  Identities=11%  Similarity=0.143  Sum_probs=83.7

Q ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhHHHHHHHHhhhhhccccccCcchhhhccCCCCCCCcccchhccccCCC
Q 031062            8 FQQNLIEIENEAEHLLFARHQLVESDIVRNGNREALTALRKRARTTKTSVISPFESIMKDTGGPGTRPLVKEVCTTCGNH   87 (166)
Q Consensus         8 ~~~~l~e~E~~ae~vL~~k~qlv~lDk~Rn~nREAl~aL~k~~~~~k~s~~~p~~~~~~~~~~~~~~~~~~~~c~~~g~~   87 (166)
                      +++.+.++..+-+++=...+++-.+...-+.+.-++..|.+.                                      
T Consensus         3 lqe~~~~~q~lq~el~~~~~q~~~le~q~~E~~~vl~eL~~l--------------------------------------   44 (107)
T d1fxka_           3 VQHQLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRA--------------------------------------   44 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--------------------------------------
Confidence            455556666666666666777777888888888999999875                                      


Q ss_pred             CCCCceeEEecCCCeeEeechhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 031062           88 DSNEHTWMMFPGTDVFAKIPFHAAHTILETDQTRLDFEAKKLQSYVKEKSLFISEKG  144 (166)
Q Consensus        88 d~dekVWi~~~gGd~FVklP~~~A~e~LEkDQe~lD~EI~kLRseLK~Kv~~L~EL~  144 (166)
                      +++.+++-.+  |++||+-|.+.+...|.+..+.++.+|++|.+.++.+...+.++.
T Consensus        45 ~~d~~vyk~v--G~vLv~~~~~e~~~~l~~~~e~l~~~i~~l~~q~~~l~~~l~~~~   99 (107)
T d1fxka_          45 ADDAEVYKSS--GNILIRVAKDELTEELQEKLETLQLREKTIERQEERVMKKLQEMQ   99 (107)
T ss_dssp             CTTCCEEEEE--TTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcccHHHHHh--cchhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6888999999  889999999999999999999999999999999999999999983

>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Prefoldin
family: Prefoldin
domain: Prefoldin alpha subunit
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.09  E-value=5.5e-05  Score=54.59  Aligned_cols=120  Identities=9%  Similarity=0.088  Sum_probs=80.1

Q ss_pred             HHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhHHHHHHHHhhhhhccccccCcchhhhccCCCCCCCcccchhccccCCCC
Q 031062            9 QQNLIEIENEAEHLLFARHQLVESDIVRNGNREALTALRKRARTTKTSVISPFESIMKDTGGPGTRPLVKEVCTTCGNHD   88 (166)
Q Consensus         9 ~~~l~e~E~~ae~vL~~k~qlv~lDk~Rn~nREAl~aL~k~~~~~k~s~~~p~~~~~~~~~~~~~~~~~~~~c~~~g~~d   88 (166)
                      .+...+++.+-+++=.-.+++-.+....+....+..+|..-.......+.-|+.                ..++-=|...
T Consensus         4 ~eL~~~~~~l~~~l~~l~~~i~~l~~~~~e~~~~~~~L~~l~~~~~~e~lvplg----------------~~~~v~~~i~   67 (133)
T d1fxkc_           4 AEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQGKDGSETLVPVG----------------AGSFIKAELK   67 (133)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEEEEE----------------TTEEEEEECC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEcC----------------CceEEEEEec
Confidence            334444455555555556666666666666666666665431111111111211                1111223456


Q ss_pred             CCCceeEEecCCCeeEeechhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 031062           89 SNEHTWMMFPGTDVFAKIPFHAAHTILETDQTRLDFEAKKLQSYVKEKSLFISEKGA  145 (166)
Q Consensus        89 ~dekVWi~~~gGd~FVklP~~~A~e~LEkDQe~lD~EI~kLRseLK~Kv~~L~EL~~  145 (166)
                      +.+++.+.+ |.+.|+.++.++|.+++++..+.++..++.+..+++.....+.++..
T Consensus        68 ~~~~vlV~l-G~g~~vE~~~~eA~~~l~~ri~~l~~~~~~l~~~~~~~~~~i~~l~~  123 (133)
T d1fxkc_          68 DTSEVIMSV-GAGVAIKKNFEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSP  123 (133)
T ss_dssp             STTEEEEEE-ETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCceEEEe-cCCeeeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            678899999 67799999999999999999999999999999999999999888743

>d1dcqa2 g.45.1.1 (A:247-368) Pyk2-associated protein beta ARF-GAP domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: ArfGap/RecO-like zinc finger
superfamily: ArfGap/RecO-like zinc finger
family: Pyk2-associated protein beta ARF-GAP domain
domain: Pyk2-associated protein beta ARF-GAP domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.87  E-value=0.43  Score=33.71  Aligned_cols=34  Identities=29%  Similarity=0.572  Sum_probs=25.9

Q ss_pred             hhccccCCCCCCCceeEEecCCCeeEeechhHHHHHHH
Q 031062           79 EVCTTCGNHDSNEHTWMMFPGTDVFAKIPFHAAHTILE  116 (166)
Q Consensus        79 ~~c~~~g~~d~dekVWi~~~gGd~FVklP~~~A~e~LE  116 (166)
                      .+|+.||..+   +.|+.+.=| +||.+.-...|.-|-
T Consensus        16 ~~CaDC~~~~---p~w~s~n~G-vfvC~~CsgiHR~lg   49 (122)
T d1dcqa2          16 DVCCDCGAPD---PTWLSTNLG-ILTCIECSGIHRELG   49 (122)
T ss_dssp             TBCTTTCCBS---CCEEETTTT-EEECHHHHHHHHHHC
T ss_pred             CccCCCCCCC---CCeEEecCC-EEEchhhhHHHhcCC
Confidence            4899999665   489997423 999988888777664