Citrus Sinensis ID: 031071

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160------
Protein Sequence
MFPASQIELPFNENDSQDMVIYQVINESTAQNISFMPQRSEVHTSSMLEPKRTISKKHYRGVRRRPWGKFAAEIRDSARHGQRIWLGTFETAEEAALAYDRAAFRMRGAKALLNFPAEVVAAPCPSSSPSLEKSNVKLSSILENNPEVSGSSSSTVSTATQRSESE
Secondary Structure (PSIPRED)
cccccccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccHHHHHccccccccEEEEcccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccEEcEEEcccccEEEEEEcccccccEEEEcccccHHHHHHHHHHHHHHHHcccEEEcccHHHcccccccccccccHHHHHHHHHHHcccccccccccccccEEEccccc
Coil and Loop (DISEMBL)
mfpasqielpfnendsqdMVIYQVINEStaqnisfmpqrsevhtssmlepkrtiskkhyrgvrrrpwgkFAAEIRDSARHGQRIWLGTFETAEEAALAYDRAAFRMRGAKALlnfpaevvaapcpssspsleksnvKLSSIlennpevsgsssstvstatqrsese
Flexible Loop (DISEMBL)
mfpasqielpfnendsQDMVIYQVINESTAQNISFMPQRSevhtssmlepkrtiskkhyrgvrrrpwgkFAAEIRDSARHGQRIWLGTFETAEEAALAYDRAAFRMRGAKALLNFPAEVVAAPCPSSSPSLEKSNVKLSSILennpevsgsssstvstatqrsese
Low Complexity Region (SEG)
MFPASQIELPFNENDSQDMVIYQVINESTAQNISFMPQRSEVHTSSMLEPKRTISKKHYRGVRRRPWGKFAAEIRDSARHGQRIWLGTFETaeeaalaydraaFRMRGAKALLNFpaevvaapcpssspsLEKSNVKLSSILENNPEvsgsssstvstATQRSESE
Disordered region (IsUnstruct)
******************MVIYQVIN********************************YRGVRRRPWGKFAAEIRDSARHGQRIWLGTFETAEEAALAYDRAAFRMRGAKALLNFPAEVV**********************************************
Disordered Region (DISOPRED)
****SQIELPFNENDSQDMVIYQV*************************************VRRRPWGKFAAEIRDSARHGQRIWLGTFETAEEAALAYDRAAFRMRGAKALLNFPA*************************************************
Disordered Region (DISEMBL)
MFPASQIELPFNENDSQDMVIYQVINESTAQNISFMPQRSEVHTSSMLEPKRTISKKHYRGVRRRPWGKFAAEIRDSARHGQRIWLGTFETAEEAALAYDRAAFRMRGAKALLNFPAEVVAA************NVKLSSILEN**********************
Disordered Region (DISPRO)
*****QIELPFNENDSQDMVIYQVIN*****************************KKHYRGVRRRPWGKFAAEIRDSARHGQRIWLGTFETAEEAALAYDRAAFRMRGAKALLNFPAEVVAA********************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFPASQIELPFNENDSQDMVIYQVINESTAQNISFMPQRSEVHTSSMLEPKRTISKKHYRGVRRRPWGKFAAEIRDSARHGQRIWLGTFETAEEAALAYDRAAFRMRGAKALLNFPAEVVAAPCPSSSPSLEKSNVKLSSILENNPEVSGSSSSTVSTATQRSESE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	166	2.2.26 [Sep-21-2011]
O04681	161	Pathogenesis-related gene	N/A	no	0.921	0.950	0.604	7e-48
Q8LDC8	218	Ethylene-responsive trans	yes	no	0.626	0.477	0.586	1e-32
O80337	268	Ethylene-responsive trans	no	no	0.704	0.436	0.465	7e-31
O80338	243	Ethylene-responsive trans	no	no	0.710	0.485	0.496	8e-31
Q40479	233	Ethylene-responsive trans	N/A	no	0.831	0.592	0.445	5e-30
Q9LW50	237	Ethylene-responsive trans	N/A	no	0.668	0.468	0.492	1e-29
Q84XB3	244	Ethylene-responsive trans	N/A	no	0.644	0.438	0.485	4e-29
Q40476	236	Ethylene-responsive trans	N/A	no	0.662	0.466	0.5	4e-28
Q8L9K1	226	Ethylene-responsive trans	no	no	0.638	0.469	0.5	9e-26
Q9LW48	282	Ethylene-responsive trans	N/A	no	0.487	0.287	0.630	9e-26

>sp|O04681|PTI5_SOLLC Pathogenesis-related genes transcriptional activator PTI5 OS=Solanum lycopersicum GN=PTI5 PE=2 SV=1

 Score =  189 bits (480), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 98/162 (60%), Positives = 124/162 (76%), Gaps = 9/162 (5%)

Query: 1   MFPASQIELPFNENDSQDMVIYQVINESTAQNISFMPQRSEVH-TSSMLEPKRTISKKHY 59
           M P  Q +LP NENDSQ+MV+Y+V+NE+ A NI ++PQR+++   +++L P + I KK Y
Sbjct: 1   MVPTPQSDLPLNENDSQEMVLYEVLNEANALNIPYLPQRNQLLPRNNILRPLQCIGKK-Y 59

Query: 60  RGVRRRPWGKFAAEIRDSARHGQRIWLGTFETAEEAALAYDRAAFRMRGAKALLNFPAEV 119
           RGVRRRPWGK+AAEIRDSARHG R+WLGTFETAEEAALAYDRAAFRMRGAKALLNFP+E+
Sbjct: 60  RGVRRRPWGKYAAEIRDSARHGARVWLGTFETAEEAALAYDRAAFRMRGAKALLNFPSEI 119

Query: 120 VAAPCPSSSPSLEKSNVKLSSILENNPEVSGSSSSTVSTATQ 161
           V A     S S++K ++  +S   NN   S SS + VS+ T 
Sbjct: 120 VNA-----SVSVDKLSLCSNSYTTNNN--SDSSLNEVSSGTN 154

Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Activates plants defense genes. Can confer resistance to Pseudomonas syringae tomato by potentiating the transcription of a set of pathogenesis related genes, downstream to a defense signaling pathway involving PTO and PRF, but probably independent of ethylene, jasmonate and salicylic acid.
Solanum lycopersicum (taxid: 4081)

>sp|Q8LDC8|ERF92_ARATH Ethylene-responsive transcription factor 1B OS=Arabidopsis thaliana GN=ERF1B PE=1 SV=2

 Score =  138 bits (348), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 68/116 (58%), Positives = 87/116 (75%), Gaps = 12/116 (10%)

Query: 9   LPFNENDSQDMVIYQVINESTAQNISFMPQRSEVHTSSMLEPKRTIS----KKHYRGVRR 64
           LPFNENDS++M +Y +I +ST        Q++ + + S   P +++S    +K YRGVRR
Sbjct: 36  LPFNENDSEEMFLYGLIEQST--------QQTYIDSDSQDLPIKSVSSRKSEKSYRGVRR 87

Query: 65  RPWGKFAAEIRDSARHGQRIWLGTFETAEEAALAYDRAAFRMRGAKALLNFPAEVV 120
           RPWGKFAAEIRDS R+G R+WLGTFE+AEEAALAYD+AAF MRG+ A+LNF AE V
Sbjct: 88  RPWGKFAAEIRDSTRNGIRVWLGTFESAEEAALAYDQAAFSMRGSSAILNFSAERV 143

Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression during the plant development, and/or mediated by stress factors and by components of stress signal transduction pathways. Seems to be a key integrator of ethylene and jasmonate signals in the regulation of ethylene/jasmonate-dependent defenses. Can mediate resistance to necrotizing fungi (Botrytis cinerea and Plectosphaerella cucumerina) and to soil borne fungi (Fusarium oxysporum conglutinans and Fusiarium oxysporum lycopersici), but probably not to necrotizing bacteria (Pseudomonas syringae tomato).

Arabidopsis thaliana (taxid: 3702)

>sp|O80337|EF100_ARATH Ethylene-responsive transcription factor 1A OS=Arabidopsis thaliana GN=ERF1A PE=1 SV=2

 Score =  132 bits (333), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 68/146 (46%), Positives = 88/146 (60%), Gaps = 29/146 (19%)

Query: 2   FPASQIELPFNENDSQDMVIYQVINES----------------------------TAQNI 33
           F  S  +LP  ENDS+DM++Y ++N++                            +   +
Sbjct: 64  FTESWGDLPLKENDSEDMLVYGILNDAFHGGWEPSSSSSDEDRSSFPSVKIETPESFAAV 123

Query: 34  SFMPQRSEVHTSSMLEPKRTISKKHYRGVRRRPWGKFAAEIRDSARHGQRIWLGTFETAE 93
             +P + E  TS +         KHYRGVR+RPWGKFAAEIRD A++G R+WLGTFETAE
Sbjct: 124 DSVPVKKE-KTSPVSAAVTAAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAE 182

Query: 94  EAALAYDRAAFRMRGAKALLNFPAEV 119
           +AALAYDRAAFRMRG++ALLNFP  V
Sbjct: 183 DAALAYDRAAFRMRGSRALLNFPLRV 208

Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|O80338|EF101_ARATH Ethylene-responsive transcription factor 2 OS=Arabidopsis thaliana GN=ERF2 PE=2 SV=1

 Score =  132 bits (333), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 68/137 (49%), Positives = 92/137 (67%), Gaps = 19/137 (13%)

Query: 2   FPASQIELPFNENDSQDMVIYQVINE-----STAQNISFM-------PQRSEVHTSSMLE 49
           F  S   LP  ENDS+DM++Y ++ +     +++ ++S +        + +E  T+   +
Sbjct: 41  FTESWGGLPLKENDSEDMLVYGLLKDAFHFDTSSSDLSCLFDFPAVKVEPTENFTAMEEK 100

Query: 50  PKRTI-------SKKHYRGVRRRPWGKFAAEIRDSARHGQRIWLGTFETAEEAALAYDRA 102
           PK+ I         KHYRGVR+RPWGKFAAEIRD A++G R+WLGTFETAE+AALAYD A
Sbjct: 101 PKKAIPVTETAVKAKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDIA 160

Query: 103 AFRMRGAKALLNFPAEV 119
           AFRMRG++ALLNFP  V
Sbjct: 161 AFRMRGSRALLNFPLRV 177

Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Involved in disease resistance pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q40479|ERF2_TOBAC Ethylene-responsive transcription factor 2 OS=Nicotiana tabacum GN=ERF2 PE=2 SV=1

 Score =  130 bits (326), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 73/164 (44%), Positives = 102/164 (62%), Gaps = 26/164 (15%)

Query: 8   ELPFNENDSQDMVIYQVINES----------TAQNISFMPQR----SEVHTSSMLEPKRT 53
           +LP   +DS+DMVIY +++++          T+  I   P+     + +   S+  P  T
Sbjct: 27  DLPLKVDDSEDMVIYGLLSDALTAGWTPFNLTSTEIKAEPREEIEPATIPVPSVAPPAET 86

Query: 54  ISK-------KHYRGVRRRPWGKFAAEIRDSARHGQRIWLGTFETAEEAALAYDRAAFRM 106
            +        +HYRGVR+RPWGKFAAEIRD A++G R+WLGT+ETAEEAALAYD+AA+RM
Sbjct: 87  TTAQAVVPKGRHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDKAAYRM 146

Query: 107 RGAKALLNFPAEV-VAAPCP----SSSPSLEKSNVKLSSILENN 145
           RG+KALLNFP  + +  P P    +   S E ++  +SS LEN 
Sbjct: 147 RGSKALLNFPHRIGLNEPEPVRLTAKRRSPEPASSSISSALENG 190

Acts as a transcriptional activator and may be involved in disease resistance pathways. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade, and to be influenced by methyl-jasmonate.

Nicotiana tabacum (taxid: 4097)

>sp|Q9LW50|ERF2_NICSY Ethylene-responsive transcription factor 2 OS=Nicotiana sylvestris GN=ERF2 PE=2 SV=1

 Score =  128 bits (322), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 66/134 (49%), Positives = 89/134 (66%), Gaps = 23/134 (17%)

Query: 8   ELPFNENDSQDMVIYQVINES----------TAQNISFMPQRSEVHTS-----SMLEPKR 52
           +LP   +DS+DMVIY +++++          T+  I   P R E+  +     S+  P  
Sbjct: 31  DLPLKVDDSEDMVIYGLLSDALTTGWTPFNLTSTEIKAEP-REEIEPATSPVPSVAPPAE 89

Query: 53  TISK-------KHYRGVRRRPWGKFAAEIRDSARHGQRIWLGTFETAEEAALAYDRAAFR 105
           T +        +HYRGVR+RPWGKFAAEIRD A++G R+WLGT+ETAEEAALAYD+AA+R
Sbjct: 90  TTTAQAVVPKGRHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDKAAYR 149

Query: 106 MRGAKALLNFPAEV 119
           MRG+KALLNFP  +
Sbjct: 150 MRGSKALLNFPHRI 163

Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional activator.

Nicotiana sylvestris (taxid: 4096)

>sp|Q84XB3|ERF1_SOLLC Ethylene-responsive transcription factor 1 OS=Solanum lycopersicum GN=ERF1 PE=2 SV=1

 Score =  127 bits (318), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 65/134 (48%), Positives = 86/134 (64%), Gaps = 27/134 (20%)

Query: 8   ELPFNENDSQDMVIYQVINES----------TAQNISFMPQRSEVHTS------------ 45
           +LP   NDS+DMVIY  + ++          T++ +   P R E+  +            
Sbjct: 39  DLPLKVNDSEDMVIYGFLQDAFSIGWTPSNLTSEEVKLEP-REEIEPAMSTSVSPPTVAP 97

Query: 46  SMLEPKRTISKKHYRGVRRRPWGKFAAEIRDSARHGQRIWLGTFETAEEAALAYDRAAFR 105
           + L+PK     +HYRGVR+RPWGKFAAEIRD A++G R+WLGT+E+AEEAALAY +AAFR
Sbjct: 98  AALQPK----GRHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYESAEEAALAYGKAAFR 153

Query: 106 MRGAKALLNFPAEV 119
           MRG KALLNFP  +
Sbjct: 154 MRGTKALLNFPHRI 167

Involved in the regulation of gene expression during fruit ripening, by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Probably acts as a transcriptional activator and may be involved in disease resistance pathways.

Solanum lycopersicum (taxid: 4081)

>sp|Q40476|ERF1_TOBAC Ethylene-responsive transcription factor 1 OS=Nicotiana tabacum GN=ERF1 PE=2 SV=1

 Score =  123 bits (309), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 64/128 (50%), Positives = 83/128 (64%), Gaps = 18/128 (14%)

Query: 8   ELPFNENDSQDMVIYQVINESTAQNISFMP-----------QRSEVHTSSMLEPKRTISK 56
           +LP   +DS+DMVIY ++ +  A N+ + P           QR E    S  E     + 
Sbjct: 40  DLPLKVDDSEDMVIYTLLKD--ALNVGWSPFNFSAGEVKSEQREEEIVVSPAETTAAPAA 97

Query: 57  -----KHYRGVRRRPWGKFAAEIRDSARHGQRIWLGTFETAEEAALAYDRAAFRMRGAKA 111
                +HYRGVRRRPWGKFAAEIRD A++G R+WLGT+ET EEAA+AYD+AA+RMRG+KA
Sbjct: 98  ELPRGRHYRGVRRRPWGKFAAEIRDPAKNGARVWLGTYETDEEAAIAYDKAAYRMRGSKA 157

Query: 112 LLNFPAEV 119
            LNFP  +
Sbjct: 158 HLNFPHRI 165

Probably acts as a transcriptional activator and may be involved in disease resistance pathways (By similarity). Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade and to be influenced by methyl-jasmonate.

Nicotiana tabacum (taxid: 4097)

>sp|Q8L9K1|ERF99_ARATH Ethylene-responsive transcription factor 13 OS=Arabidopsis thaliana GN=ERF13 PE=2 SV=2

 Score =  115 bits (289), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 60/120 (50%), Positives = 78/120 (65%), Gaps = 14/120 (11%)

Query: 8   ELPFNENDSQDMVIYQVINESTAQNISFMPQRSEVHTSSMLEPKRTISKK---------- 57
           +LP + +DSQDM IY  + ++ +    + P    V TS   E K   +K           
Sbjct: 33  DLPLSVDDSQDMAIYNTLRDAVSS--GWTPSVPPV-TSPAEENKPPATKASGSHAPRQKG 89

Query: 58  -HYRGVRRRPWGKFAAEIRDSARHGQRIWLGTFETAEEAALAYDRAAFRMRGAKALLNFP 116
             YRGVRRRPWGKFAAEIRD  ++G R+WLGT+ET E+AA+AYDRAAF++RG+KA LNFP
Sbjct: 90  MQYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYETPEDAAVAYDRAAFQLRGSKAKLNFP 149

Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LW48|ERF5_NICSY Ethylene-responsive transcription factor 5 OS=Nicotiana sylvestris GN=ERF5 PE=2 SV=1

 Score =  115 bits (289), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 53/84 (63%), Positives = 64/84 (76%), Gaps = 3/84 (3%)

Query: 36  MPQRSEVHTSSMLEPKRTISKKHYRGVRRRPWGKFAAEIRDSARHGQRIWLGTFETAEEA 95
           +P + EV     L P     KKHYRGVR+RPWGKFAAEIRD  R G R+WLGTF+TA EA
Sbjct: 118 IPVKQEVVQKVELAP---TEKKHYRGVRQRPWGKFAAEIRDPNRKGTRVWLGTFDTAIEA 174

Query: 96  ALAYDRAAFRMRGAKALLNFPAEV 119
           A AYDRAA+++RG+KA++NFP EV
Sbjct: 175 AKAYDRAAYKLRGSKAIVNFPLEV 198

Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional activator.

Nicotiana sylvestris (taxid: 4096)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	166
255563026	173	Ethylene-responsive transcription factor	0.843	0.809	0.712	1e-51
289466349	182	ERF3 transcription factor [Vitis pseudor	0.825	0.752	0.692	7e-49
357446829	157	Ethylene-responsive transcription factor	0.734	0.777	0.709	6e-48
356555384	183	PREDICTED: pathogenesis-related genes tr	0.722	0.655	0.722	6e-48
381356172	204	ethylene response factor ERF2 [Eriobotry	0.740	0.602	0.717	4e-47
297740455	168	unnamed protein product [Vitis vinifera]	0.698	0.690	0.771	3e-46
350539681	161	pathogenesis-related genes transcription	0.921	0.950	0.604	3e-46
356546613	231	PREDICTED: pathogenesis-related genes tr	0.921	0.662	0.574	2e-45
147866350	153	hypothetical protein VITISV_020434 [Viti	0.825	0.895	0.707	4e-45
224079143	183	AP2/ERF domain-containing transcription	0.686	0.622	0.747	7e-44

>gi|255563026|ref|XP_002522517.1| Ethylene-responsive transcription factor, putative [Ricinus communis] gi|223538208|gb|EEF39817.1| Ethylene-responsive transcription factor, putative [Ricinus communis]

 Score =  207 bits (528), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 104/146 (71%), Positives = 116/146 (79%), Gaps = 6/146 (4%)

Query: 1   MFPASQIELPFNENDSQDMVIYQVINE-STAQNISFMPQRSEVHTSSMLEPKRTISKKHY 59
           M   SQ ELPFNENDSQDMVIYQ+INE +TA N S MP RS++++S M  P + I+KKHY
Sbjct: 1   MVFTSQNELPFNENDSQDMVIYQMINEGATAPNNSNMPPRSQINSSHMFPPAKVIAKKHY 60

Query: 60  RGVRRRPWGKFAAEIRDSARHGQRIWLGTFETAEEAALAYDRAAFRMRGAKALLNFPAEV 119
           RGVRRRPWGK+AAEIRDSARHG R+WLGTFETAEEAALAYDRAAFRMRGAKALLNFPAEV
Sbjct: 61  RGVRRRPWGKYAAEIRDSARHGARVWLGTFETAEEAALAYDRAAFRMRGAKALLNFPAEV 120

Query: 120 VAAPCPSSSPSLEKSNVKLSSILENN 145
           VAA      P     N+ LS+ L  N
Sbjct: 121 VAATSAGFKP-----NLNLSTTLSRN 141

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|289466349|gb|ADC94860.1| ERF3 transcription factor [Vitis pseudoreticulata]

 Score =  198 bits (503), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 97/140 (69%), Positives = 111/140 (79%), Gaps = 3/140 (2%)

Query: 1   MFPASQIELPFNENDSQDMVIYQVINESTAQNISFMP--QRSEVHTSSMLEPKRTISKKH 58
           M P  Q ELP NENDSQDMV+Y+V+NE+ A N S +P  +     TS+ LEP RTI+KKH
Sbjct: 1   MAPPCQSELPLNENDSQDMVLYEVLNEAFALNKSIIPPIKHQTTPTSNALEPARTIAKKH 60

Query: 59  YRGVRRRPWGKFAAEIRDSARHGQRIWLGTFETAEEAALAYDRAAFRMRGAKALLNFPAE 118
           YRGVRRRPWGK+AAEIRDSA+HG R WLGTFETAEEAALAYDRAAFRMRG+KALLNFPAE
Sbjct: 61  YRGVRRRPWGKYAAEIRDSAKHGARTWLGTFETAEEAALAYDRAAFRMRGSKALLNFPAE 120

Query: 119 VVAAPCPSS-SPSLEKSNVK 137
           VVAA    +  P+L   N+K
Sbjct: 121 VVAASSQRTPKPNLSSENLK 140

Source: Vitis pseudoreticulata

Species: Vitis pseudoreticulata

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357446829|ref|XP_003593690.1| Ethylene-responsive transcription factor [Medicago truncatula] gi|355482738|gb|AES63941.1| Ethylene-responsive transcription factor [Medicago truncatula]

 Score =  195 bits (495), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 88/124 (70%), Positives = 105/124 (84%), Gaps = 2/124 (1%)

Query: 1   MFPASQIELPFNENDSQDMVIYQVINESTAQNISFMPQRSEVHTS--SMLEPKRTISKKH 58
           +   SQ ELP NENDSQDMVIYQ++NE+ A   +++P R+  H +  S LEP +TI+KKH
Sbjct: 3   LLSQSQPELPLNENDSQDMVIYQILNEANALTNTYVPHRNHHHQAMLSCLEPTKTIAKKH 62

Query: 59  YRGVRRRPWGKFAAEIRDSARHGQRIWLGTFETAEEAALAYDRAAFRMRGAKALLNFPAE 118
           YRGVRRRPWGK+AAEIRDSARHG R+WLGTF+TAEEAA+AYDRAAF+MRG+KALLNFPAE
Sbjct: 63  YRGVRRRPWGKYAAEIRDSARHGARVWLGTFQTAEEAAMAYDRAAFKMRGSKALLNFPAE 122

Query: 119 VVAA 122
            VAA
Sbjct: 123 TVAA 126

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356555384|ref|XP_003546012.1| PREDICTED: pathogenesis-related genes transcriptional activator PTI5-like [Glycine max]

 Score =  195 bits (495), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 91/126 (72%), Positives = 106/126 (84%), Gaps = 6/126 (4%)

Query: 1   MFPASQIE---LPFNENDSQDMVIYQVINESTAQNISFMPQRSEVHTSSM-LEPKRTISK 56
           +F  SQ +   LPFNEND QDMVIYQV+NE+ A   +F+PQR  +H   + LEP R I+K
Sbjct: 15  LFSHSQTQTELLPFNENDPQDMVIYQVLNEANALTNTFLPQR--LHQPQLCLEPTRNITK 72

Query: 57  KHYRGVRRRPWGKFAAEIRDSARHGQRIWLGTFETAEEAALAYDRAAFRMRGAKALLNFP 116
           KHYRGVRRRPWGK+AAEIRDSARHG RIWLGTF+TAEEAA+AYDRAAF+MRG+KALLNFP
Sbjct: 73  KHYRGVRRRPWGKYAAEIRDSARHGARIWLGTFQTAEEAAMAYDRAAFKMRGSKALLNFP 132

Query: 117 AEVVAA 122
           AE+VAA
Sbjct: 133 AEIVAA 138

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|381356172|gb|AFG26327.1| ethylene response factor ERF2 [Eriobotrya japonica]

 Score =  192 bits (488), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 89/124 (71%), Positives = 102/124 (82%), Gaps = 1/124 (0%)

Query: 6   QIELPFNENDSQDMVIYQVINESTAQNISFMPQRSEVHTS-SMLEPKRTISKKHYRGVRR 64
           Q ELP NENDSQDMVIYQV++E+T+   S +PQR  +H   + LEP + I KKHYRGVRR
Sbjct: 22  QNELPLNENDSQDMVIYQVLHEATSLTPSLLPQRHHIHRQPNRLEPTKNIGKKHYRGVRR 81

Query: 65  RPWGKFAAEIRDSARHGQRIWLGTFETAEEAALAYDRAAFRMRGAKALLNFPAEVVAAPC 124
           RPWGK+AAEIRDSAR G R+WLGTF TAEEAALAYDRAAFRMRG KA+LNFPAE+VAA  
Sbjct: 82  RPWGKYAAEIRDSARQGARVWLGTFNTAEEAALAYDRAAFRMRGTKAMLNFPAEIVAASS 141

Query: 125 PSSS 128
           P +S
Sbjct: 142 PPTS 145

Source: Eriobotrya japonica

Species: Eriobotrya japonica

Genus: Eriobotrya

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297740455|emb|CBI30637.3| unnamed protein product [Vitis vinifera]

 Score =  189 bits (481), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 91/118 (77%), Positives = 99/118 (83%), Gaps = 2/118 (1%)

Query: 1   MFPASQIELPFNENDSQDMVIYQVINESTAQNISFMP--QRSEVHTSSMLEPKRTISKKH 58
           M P  Q ELP NENDSQDMVIYQV+NE+ A N S +P  +R    TSS LEP RTI+KKH
Sbjct: 1   MAPTCQSELPLNENDSQDMVIYQVLNEAFALNNSIIPPIKRQTTPTSSALEPARTIAKKH 60

Query: 59  YRGVRRRPWGKFAAEIRDSARHGQRIWLGTFETAEEAALAYDRAAFRMRGAKALLNFP 116
           YRGVRRRPWGK+AAEIRDSA+HG R WLGTFETAEEAALAYDRAAFRMRG+KALLNFP
Sbjct: 61  YRGVRRRPWGKYAAEIRDSAKHGARTWLGTFETAEEAALAYDRAAFRMRGSKALLNFP 118

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350539681|ref|NP_001233987.1| pathogenesis-related genes transcriptional activator PTI5 [Solanum lycopersicum] gi|7531180|sp|O04681.1|PTI5_SOLLC RecName: Full=Pathogenesis-related genes transcriptional activator PTI5; AltName: Full=PTO-interacting protein 5 gi|2213783|gb|AAC49740.1| Pti5 [Solanum lycopersicum]

 Score =  189 bits (480), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 98/162 (60%), Positives = 124/162 (76%), Gaps = 9/162 (5%)

Query: 1   MFPASQIELPFNENDSQDMVIYQVINESTAQNISFMPQRSEVH-TSSMLEPKRTISKKHY 59
           M P  Q +LP NENDSQ+MV+Y+V+NE+ A NI ++PQR+++   +++L P + I KK Y
Sbjct: 1   MVPTPQSDLPLNENDSQEMVLYEVLNEANALNIPYLPQRNQLLPRNNILRPLQCIGKK-Y 59

Query: 60  RGVRRRPWGKFAAEIRDSARHGQRIWLGTFETAEEAALAYDRAAFRMRGAKALLNFPAEV 119
           RGVRRRPWGK+AAEIRDSARHG R+WLGTFETAEEAALAYDRAAFRMRGAKALLNFP+E+
Sbjct: 60  RGVRRRPWGKYAAEIRDSARHGARVWLGTFETAEEAALAYDRAAFRMRGAKALLNFPSEI 119

Query: 120 VAAPCPSSSPSLEKSNVKLSSILENNPEVSGSSSSTVSTATQ 161
           V A     S S++K ++  +S   NN   S SS + VS+ T 
Sbjct: 120 VNA-----SVSVDKLSLCSNSYTTNNN--SDSSLNEVSSGTN 154

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356546613|ref|XP_003541719.1| PREDICTED: pathogenesis-related genes transcriptional activator PTI5-like [Glycine max]

 Score =  186 bits (473), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 100/174 (57%), Positives = 124/174 (71%), Gaps = 21/174 (12%)

Query: 2   FPASQIE----LPFNENDSQDMVIYQVINESTAQNISFMPQRSEVHTSSMLEPKRTISKK 57
           FP SQ +    LPFNEND QDMVIYQV++E+ A   +F+PQ           P R I+KK
Sbjct: 64  FPHSQTQTDLLLPFNENDPQDMVIYQVLHEANALTNTFLPQ-----------PTRNITKK 112

Query: 58  HYRGVRRRPWGKFAAEIRDSARHGQRIWLGTFETAEEAALAYDRAAFRMRGAKALLNFPA 117
           HYRGVRRRPWGK+AAEIRDSARHG RIWLGTF+TAEEAA+AYDRAAF+MRG+KALLNFPA
Sbjct: 113 HYRGVRRRPWGKYAAEIRDSARHGARIWLGTFQTAEEAAMAYDRAAFKMRGSKALLNFPA 172

Query: 118 EVVAAPCPSSSPSLEKSNVKLSSILENNPEV-----SGSSSSTVSTATQRSESE 166
           E+VAA   ++  S + S+   ++   NNP+      +GSS +  ST   R++SE
Sbjct: 173 EIVAA-ATATELSFKSSSNNNNNNNNNNPDAVSDSSAGSSCTNNSTWVNRNQSE 225

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147866350|emb|CAN84146.1| hypothetical protein VITISV_020434 [Vitis vinifera]

 Score =  185 bits (470), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 99/140 (70%), Positives = 110/140 (78%), Gaps = 3/140 (2%)

Query: 1   MFPASQIELPFNENDSQDMVIYQVINESTAQNISFMP--QRSEVHTSSMLEPKRTISKKH 58
           M P  Q ELP NENDSQDMVIYQV+NE+ A N S +P  +R    TSS LEP RTI+KKH
Sbjct: 1   MAPXCQSELPLNENDSQDMVIYQVLNEAFALNNSIIPPIKRQTTPTSSALEPARTIAKKH 60

Query: 59  YRGVRRRPWGKFAAEIRDSARHGQRIWLGTFETAEEAALAYDRAAFRMRGAKALLNFPAE 118
           YRGVRRRPWGK+AAEIRDSA+HG R WLGT E AEEAALAYDRAAFRMRG+KALLNFPAE
Sbjct: 61  YRGVRRRPWGKYAAEIRDSAKHGARTWLGTXEXAEEAALAYDRAAFRMRGSKALLNFPAE 120

Query: 119 VVAAPCPSS-SPSLEKSNVK 137
           VVAA    +  P+L   N+K
Sbjct: 121 VVAASSQRTPKPNLSSENLK 140

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224079143|ref|XP_002305766.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|222848730|gb|EEE86277.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  181 bits (460), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 89/119 (74%), Positives = 101/119 (84%), Gaps = 5/119 (4%)

Query: 8   ELPFNENDSQDMVIYQVINESTAQNIS---FMPQRSEVHTSSMLEPKRT-ISKKHYRGVR 63
           +LP NENDSQDMVIY +I+E +A N S    +P RS ++TS ML+P RT ++KKHYRGVR
Sbjct: 9   DLPLNENDSQDMVIYHMISEISAPNSSSNNTLP-RSHINTSGMLQPARTAVAKKHYRGVR 67

Query: 64  RRPWGKFAAEIRDSARHGQRIWLGTFETAEEAALAYDRAAFRMRGAKALLNFPAEVVAA 122
           RRPWGK+AAEIRDS R G RIWLGTFETAEEAALAYDRAAF MRG+KALLNFPAEVVAA
Sbjct: 68  RRPWGKYAAEIRDSRRRGARIWLGTFETAEEAALAYDRAAFNMRGSKALLNFPAEVVAA 126

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	166
TAIR|locus:2086223	218	ERF1 "ethylene response factor	0.650	0.495	0.473	4.8e-23
UNIPROTKB|Q5MFV1	303	BIERF3 "BTH-induced ERF transc	0.355	0.194	0.610	1.2e-21
TAIR|locus:2151576	201	AT5G61590 [Arabidopsis thalian	0.668	0.552	0.456	8.3e-19
TAIR|locus:2129116	268	ERF-1 "ethylene responsive ele	0.632	0.391	0.422	1.1e-18
TAIR|locus:2171514	243	ERF2 "ethylene responsive elem	0.608	0.415	0.403	2.8e-18
TAIR|locus:2055002	226	ERF13 "ethylene-responsive ele	0.650	0.477	0.431	5.8e-18
TAIR|locus:2129106	282	ERF6 "AT4G17490" [Arabidopsis	0.361	0.212	0.633	2e-17
TAIR|locus:2171529	300	ERF5 "ethylene responsive elem	0.403	0.223	0.567	2e-17
TAIR|locus:2086203	139	ESE1 "ethylene and salt induci	0.403	0.482	0.573	2.3e-16
TAIR|locus:2176511	131	AT5G43410 [Arabidopsis thalian	0.385	0.488	0.545	4.7e-16

TAIR|locus:2086223 ERF1 "ethylene response factor 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
 Identities = 53/112 (47%), Positives = 73/112 (65%)

Query:     4 ASQIELPFNENDSQDMVIYQVINESTAQNISFMPQRSEVHTSSMLEPKRTISKKHYRGVR 63
             ++   LPFNENDS++M +Y +I +ST Q  +++   S+      +  ++  S+K YRGVR
Sbjct:    31 SNNYSLPFNENDSEEMFLYGLIEQSTQQ--TYIDSDSQDLPIKSVSSRK--SEKSYRGVR 86

Query:    64 RRPWGKFAAEIRDSARHGQRIWLGTFETXXXXXXXXXXXXFRMRGAKALLNF 115
             RRPWGKFAAEIRDS R+G R+WLGTFE+            F MRG+ A+LNF
Sbjct:    87 RRPWGKFAAEIRDSTRNGIRVWLGTFESAEEAALAYDQAAFSMRGSSAILNF 138

GO:0003677 "DNA binding" evidence=IEA;IDA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0006952 "defense response" evidence=IMP

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=TAS

GO:0009873 "ethylene mediated signaling pathway" evidence=IGI;TAS

UNIPROTKB|Q5MFV1 BIERF3 "BTH-induced ERF transcriptional factor 3" [Oryza sativa Indica Group (taxid:39946)]

 Score = 208 (78.3 bits), Expect = 1.2e-21, Sum P(2) = 1.2e-21
 Identities = 36/59 (61%), Positives = 45/59 (76%)

Query:    57 KHYRGVRRRPWGKFAAEIRDSARHGQRIWLGTFETXXXXXXXXXXXXFRMRGAKALLNF 115
             KHYRGVR+RPWGKFAAEIRD A++G R+WLGTF++            +RMRG++ALLNF
Sbjct:   147 KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFDSAEEAAVAYDRAAYRMRGSRALLNF 205

GO:0009620 "response to fungus" evidence=IC

TAIR|locus:2151576 AT5G61590 [Arabidopsis thaliana (taxid:3702)]

 Score = 226 (84.6 bits), Expect = 8.3e-19, P = 8.3e-19
 Identities = 52/114 (45%), Positives = 65/114 (57%)

Query:     3 PASQIELPFNENDSQDMVIYQVINESTAQNISFMPQRSEVHT-SSMLEPKRTISKKHYRG 61
             P  +   P  + DS    I Q+  ES++   S      EV T S+  + KR    +HYRG
Sbjct:    52 PKLEPSSPVLDPDSYVQEILQMEAESSSS--SSTTTSPEVETVSNRKKTKRFEETRHYRG 109

Query:    62 VRRRPWGKFAAEIRDSARHGQRIWLGTFETXXXXXXXXXXXXFRMRGAKALLNF 115
             VRRRPWGKFAAEIRD A+ G RIWLGTFE+            F++RG KA+LNF
Sbjct:   110 VRRRPWGKFAAEIRDPAKKGSRIWLGTFESDIDAARAYDYAAFKLRGRKAVLNF 163

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009414 "response to water deprivation" evidence=IEP

TAIR|locus:2129116 ERF-1 "ethylene responsive element binding factor 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 225 (84.3 bits), Expect = 1.1e-18, P = 1.1e-18
 Identities = 46/109 (42%), Positives = 63/109 (57%)

Query:    10 PFNENDSQDMVIYQVINESTAQN---ISFMPQRSEVHTSSMLEPKRTISKKHYRGVRRRP 66
             P + +  +D   +  +   T ++   +  +P + E  TS +         KHYRGVR+RP
Sbjct:    97 PSSSSSDEDRSSFPSVKIETPESFAAVDSVPVKKE-KTSPVSAAVTAAKGKHYRGVRQRP 155

Query:    67 WGKFAAEIRDSARHGQRIWLGTFETXXXXXXXXXXXXFRMRGAKALLNF 115
             WGKFAAEIRD A++G R+WLGTFET            FRMRG++ALLNF
Sbjct:   156 WGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNF 204

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IDA

GO:0005643 "nuclear pore" evidence=ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2171514 ERF2 "ethylene responsive element binding factor 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
 Identities = 42/104 (40%), Positives = 62/104 (59%)

Query:    12 NENDSQDMVIYQVINESTAQNISFMPQRSEVHTSSMLEPKRTISKKHYRGVRRRPWGKFA 71
             + +D   +  +  +     +N + M ++ +    ++   +  +  KHYRGVR+RPWGKFA
Sbjct:    73 SSSDLSCLFDFPAVKVEPTENFTAMEEKPK---KAIPVTETAVKAKHYRGVRQRPWGKFA 129

Query:    72 AEIRDSARHGQRIWLGTFETXXXXXXXXXXXXFRMRGAKALLNF 115
             AEIRD A++G R+WLGTFET            FRMRG++ALLNF
Sbjct:   130 AEIRDPAKNGARVWLGTFETAEDAALAYDIAAFRMRGSRALLNF 173

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA;TAS

GO:0005634 "nucleus" evidence=ISM;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IDA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA;TAS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IMP;IDA

GO:0009864 "induced systemic resistance, jasmonic acid mediated signaling pathway" evidence=IMP

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

TAIR|locus:2055002 ERF13 "ethylene-responsive element binding factor 13" [Arabidopsis thaliana (taxid:3702)]

 Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
 Identities = 50/116 (43%), Positives = 66/116 (56%)

Query:     8 ELPFNENDSQDMVIYQVINE--STAQNISFMPQRSEVHTSSMLEPKRTIS----KK--HY 59
             +LP + +DSQDM IY  + +  S+    S  P  S    +     K + S    +K   Y
Sbjct:    33 DLPLSVDDSQDMAIYNTLRDAVSSGWTPSVPPVTSPAEENKPPATKASGSHAPRQKGMQY 92

Query:    60 RGVRRRPWGKFAAEIRDSARHGQRIWLGTFETXXXXXXXXXXXXFRMRGAKALLNF 115
             RGVRRRPWGKFAAEIRD  ++G R+WLGT+ET            F++RG+KA LNF
Sbjct:    93 RGVRRRPWGKFAAEIRDPKKNGARVWLGTYETPEDAAVAYDRAAFQLRGSKAKLNF 148

GO:0003677 "DNA binding" evidence=IEA;ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;ISS;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA;TAS

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

TAIR|locus:2129106 ERF6 "AT4G17490" [Arabidopsis thaliana (taxid:3702)]

 Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 38/60 (63%), Positives = 43/60 (71%)

Query:    56 KKHYRGVRRRPWGKFAAEIRDSARHGQRIWLGTFETXXXXXXXXXXXXFRMRGAKALLNF 115
             K+HYRGVR RPWGKFAAEIRD  R G R+WLGTFET            FR+RG+KA+LNF
Sbjct:   134 KRHYRGVRMRPWGKFAAEIRDPTRRGTRVWLGTFETAIEAARAYDKEAFRLRGSKAILNF 193

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA;TAS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA;TAS

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0000302 "response to reactive oxygen species" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0009644 "response to high light intensity" evidence=IMP

TAIR|locus:2171529 ERF5 "ethylene responsive element binding factor 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 38/67 (56%), Positives = 46/67 (68%)

Query:    49 EPKRTISKKHYRGVRRRPWGKFAAEIRDSARHGQRIWLGTFETXXXXXXXXXXXXFRMRG 108
             +P     KKHYRGVR+RPWGKFAAEIRD  + G R+WLGTF+T            FR+RG
Sbjct:   146 KPVSEEEKKHYRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFDTAIEAARAYDEAAFRLRG 205

Query:   109 AKALLNF 115
             +KA+LNF
Sbjct:   206 SKAILNF 212

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IDA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA;TAS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0009409 "response to cold" evidence=IEP

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

TAIR|locus:2086203 ESE1 "ethylene and salt inducible 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 203 (76.5 bits), Expect = 2.3e-16, P = 2.3e-16
 Identities = 39/68 (57%), Positives = 45/68 (66%)

Query:    48 LEPKRTISKKHYRGVRRRPWGKFAAEIRDSARHGQRIWLGTFETXXXXXXXXXXXXFRMR 107
             +E   T   K YRGVR+RPWGK+AAEIRDSARHG R+WLGTF T            F MR
Sbjct:     4 IESYNTNEMK-YRGVRKRPWGKYAAEIRDSARHGARVWLGTFNTAEDAARAYDRAAFGMR 62

Query:   108 GAKALLNF 115
             G +A+LNF
Sbjct:    63 GQRAILNF 70

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;ISS;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009873 "ethylene mediated signaling pathway" evidence=TAS

TAIR|locus:2176511 AT5G43410 [Arabidopsis thaliana (taxid:3702)]

 Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
 Identities = 36/66 (54%), Positives = 45/66 (68%)

Query:    52 RTISKKH--YRGVRRRPWGKFAAEIRDSARHGQRIWLGTFETXXXXXXXXXXXXFRMRGA 109
             R +  +H  YRGVRRRPWGK+AAEIRDS +HG+R+WLGTF+T            + MRG 
Sbjct:     6 RGVGAEHGKYRGVRRRPWGKYAAEIRDSRKHGERVWLGTFDTAEEAARAYDQAAYSMRGQ 65

Query:   110 KALLNF 115
              A+LNF
Sbjct:    66 AAILNF 71

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O04681	PTI5_SOLLC	No assigned EC number	0.6049	0.9216	0.9503	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	166
smart00380	64	smart00380, AP2, DNA-binding domain in plant prote	4e-33
cd00018	61	cd00018, AP2, DNA-binding domain found in transcri	8e-32
pfam00847	53	pfam00847, AP2, AP2 domain	4e-15

>gnl|CDD|197689 smart00380, AP2, DNA-binding domain in plant proteins such as APETALA2 and EREBPs

 Score =  111 bits (280), Expect = 4e-33
 Identities = 42/59 (71%), Positives = 50/59 (84%), Gaps = 1/59 (1%)

Query: 58  HYRGVRRRPWGKFAAEIRDSARHGQRIWLGTFETAEEAALAYDRAAFRMRGAKALLNFP 116
            YRGVR+RPWGK+ AEIRD ++ G+R+WLGTF+TAEEAA AYDRAAF+ RG  A LNFP
Sbjct: 1   KYRGVRQRPWGKWVAEIRDPSK-GKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFP 58

Length = 64

>gnl|CDD|237985 cd00018, AP2, DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

 Score =  108 bits (271), Expect = 8e-32
 Identities = 42/61 (68%), Positives = 51/61 (83%), Gaps = 1/61 (1%)

Query: 57  KHYRGVRRRPWGKFAAEIRDSARHGQRIWLGTFETAEEAALAYDRAAFRMRGAKALLNFP 116
             YRGVR+RPWGK+ AEIRD +  G+RIWLGTF+TAEEAA AYDRAA ++RG+ A+LNFP
Sbjct: 1   SKYRGVRQRPWGKWVAEIRDPSG-GRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFP 59

Query: 117 A 117
            
Sbjct: 60  D 60

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies. Length = 61

>gnl|CDD|216148 pfam00847, AP2, AP2 domain

 Score = 65.4 bits (160), Expect = 4e-15
 Identities = 25/54 (46%), Positives = 32/54 (59%), Gaps = 3/54 (5%)

Query: 57  KHYRGVRRRP-WGKFAAEIRD-SARHGQRIWLGTFETAEEAALAYDRAAFRMRG 108
             Y+GVR    WG++ AEIRD   +  +R  LGTF T EEAA A   A  ++RG
Sbjct: 1   SGYKGVRYDKRWGRWVAEIRDPGEKKKKRFSLGTFGT-EEAARAAIAARLKLRG 53

This 60 amino acid residue domain can bind to DNA and is found in transcription factor proteins. Length = 53

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	166
cd00018	61	AP2 DNA-binding domain found in transcription regu	99.86
smart00380	64	AP2 DNA-binding domain in plant proteins such as A	99.85
PHA00280	121	putative NHN endonuclease	99.59
PF00847	56	AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-	99.31
PF14657	46	Integrase_AP2: AP2-like DNA-binding integrase doma	85.63

>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

Probab=99.86  E-value=5.8e-22  Score=133.60  Aligned_cols=61  Identities=69%  Similarity=1.246  Sum_probs=56.5

Q ss_pred             CceeEeEECCCCcEEEEEeeCCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCCCCCcc
Q 031071           57 KHYRGVRRRPWGKFAAEIRDSARHGQRIWLGTFETAEEAALAYDRAAFRMRGAKALLNFPAE  118 (166)
Q Consensus        57 S~YrGV~~r~~gkW~A~I~~~~~~gk~i~LGtF~T~eEAA~AYD~aa~~~~G~~A~lNFp~~  118 (166)
                      |+|+||+++++|||+|+|++.. .|+++|||+|+|+||||.|||.+++++||.++.+|||++
T Consensus         1 s~~~GV~~~~~gkw~A~I~~~~-~gk~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~   61 (61)
T cd00018           1 SKYRGVRQRPWGKWVAEIRDPS-GGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS   61 (61)
T ss_pred             CCccCEEECCCCcEEEEEEeCC-CCceEccCCCCCHHHHHHHHHHHHHHhcCCccccCCCCC
Confidence            6899999888999999999842 289999999999999999999999999999999999974

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.

>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs

Probab=99.85  E-value=2.8e-21  Score=131.82  Aligned_cols=63  Identities=67%  Similarity=1.204  Sum_probs=58.9

Q ss_pred             ceeEeEECCCCcEEEEEeeCCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCCCCCccccc
Q 031071           58 HYRGVRRRPWGKFAAEIRDSARHGQRIWLGTFETAEEAALAYDRAAFRMRGAKALLNFPAEVVA  121 (166)
Q Consensus        58 ~YrGV~~r~~gkW~A~I~~~~~~gk~i~LGtF~T~eEAA~AYD~aa~~~~G~~A~lNFp~~~~~  121 (166)
                      +|+||+++++|||+|+|+++. +|+.+|||+|+|+||||.|||.+++++||..+.+|||.+.|.
T Consensus         1 ~~kGV~~~~~gkw~A~I~~~~-~~k~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~~y~   63 (64)
T smart00380        1 KYRGVRQRPWGKWVAEIRDPS-KGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSLYD   63 (64)
T ss_pred             CEeeEEeCCCCeEEEEEEecC-CCcEEecCCCCCHHHHHHHHHHHHHHhcCCccccCCCCccCC
Confidence            499999988999999999853 589999999999999999999999999999999999999885

>PHA00280 putative NHN endonuclease

Probab=99.59  E-value=2.3e-15  Score=115.48  Aligned_cols=68  Identities=12%  Similarity=0.091  Sum_probs=57.7

Q ss_pred             cccccCcCCCCCCCCCCceeEeEECC-CCcEEEEEeeCCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCC
Q 031071           41 EVHTSSMLEPKRTISKKHYRGVRRRP-WGKFAAEIRDSARHGQRIWLGTFETAEEAALAYDRAAFRMRGAKAL  112 (166)
Q Consensus        41 ~~~~~~~~~~~~~~~~S~YrGV~~r~-~gkW~A~I~~~~~~gk~i~LGtF~T~eEAA~AYD~aa~~~~G~~A~  112 (166)
                      +..+......+++.|+|||+||++.+ .|||+|+|+.   +||+++||.|+++|+|+.||+ ++.++||++|.
T Consensus        51 T~~eN~~N~~~~~~N~SG~kGV~~~k~~~kw~A~I~~---~gK~~~lG~f~~~e~A~~a~~-~~~~lhGeFa~  119 (121)
T PHA00280         51 LPKENSWNMKTPKSNTSGLKGLSWSKEREMWRGTVTA---EGKQHNFRSRDLLEVVAWIYR-TRRELHGQFAR  119 (121)
T ss_pred             CHHHHhcccCCCCCCCCCCCeeEEecCCCeEEEEEEE---CCEEEEcCCCCCHHHHHHHHH-HHHHHhhcccc
Confidence            33344556666778999999998655 6999999998   799999999999999999997 78899999985

>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes

Probab=99.31  E-value=5.4e-12  Score=82.93  Aligned_cols=53  Identities=32%  Similarity=0.454  Sum_probs=45.8

Q ss_pred             CceeEeEECC-CCcEEEEEeeCCCCC--eEEecCCCCCHHHHHHHHHHHHHHhcCC
Q 031071           57 KHYRGVRRRP-WGKFAAEIRDSARHG--QRIWLGTFETAEEAALAYDRAAFRMRGA  109 (166)
Q Consensus        57 S~YrGV~~r~-~gkW~A~I~~~~~~g--k~i~LGtF~T~eEAA~AYD~aa~~~~G~  109 (166)
                      |+|+||++.+ .++|+|+|++...+|  ++++||.|++++||++||+.++.+++|+
T Consensus         1 s~~~GV~~~~~~~~W~a~i~~~~~~g~~k~f~~g~fg~~~eA~~~a~~~r~~~~~e   56 (56)
T PF00847_consen    1 SGYKGVSWDKRRGRWRAQIRVWSENGKRKRFSVGKFGFEEEAKRAAIEARKELEGE   56 (56)
T ss_dssp             SSSTTEEEETTTTEEEEEEEECCCTTEEEEEEECCCCCHHHHHHHHHHHHHHCTS-
T ss_pred             CCcEEEEEcCCCCEEEEEEEEcccCcccEEEeCccCCCHHHHHHHHHHHHHHhcCC
Confidence            6899998665 699999999843343  9999999999999999999999999874

Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.

>PF14657 Integrase_AP2: AP2-like DNA-binding integrase domain

Probab=85.63  E-value=3.6  Score=25.84  Aligned_cols=39  Identities=13%  Similarity=0.103  Sum_probs=29.3

Q ss_pred             cEEEEEe-eC--CCCCeEEecCCCCCHHHHHHHHHHHHHHhc
Q 031071           69 KFAAEIR-DS--ARHGQRIWLGTFETAEEAALAYDRAAFRMR  107 (166)
Q Consensus        69 kW~A~I~-~~--~~~gk~i~LGtF~T~eEAA~AYD~aa~~~~  107 (166)
                      +|..+|. ..  .++.++++-+-|.|..||..+..++...+.
T Consensus         1 ~w~~~v~g~~~~~Gkrk~~~k~GF~TkkeA~~~~~~~~~~~~   42 (46)
T PF14657_consen    1 TWYYRVYGYDDETGKRKQKTKRGFKTKKEAEKALAKIEAELE   42 (46)
T ss_pred             CEEEEEEEEECCCCCEEEEEcCCCCcHHHHHHHHHHHHHHHH
Confidence            5888883 22  344477888999999999999988766653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	166
2gcc_A	70	Solution Structure Of The Gcc-Box Binding Domain, N		2e-18
1gcc_A	63	Solution Nmr Structure Of The Complex Of Gcc-Box Bi		3e-18

>pdb|2GCC|A Chain A, Solution Structure Of The Gcc-Box Binding Domain, Nmr, Minimized Mean Structure Length = 70

Iteration: 1
 Score = 87.8 bits (216), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 39/59 (66%), Positives = 45/59 (76%)
Query: 57  KHYRGVRRRPWGKFAAEIRDSARHGQRIWLGTFETXXXXXXXXXXXXFRMRGAKALLNF 115
           KHYRGVR+RPWGKFAAEIRD A++G R+WLGTFET            FRMRG++ALLNF
Sbjct: 4   KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNF 62

>pdb|1GCC|A Chain A, Solution Nmr Structure Of The Complex Of Gcc-Box Binding Domain Of Aterf1 And Gcc-Box Dna, Minimized Average Structure Length = 63

Iteration: 1
 Score = 87.4 bits (215), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 39/59 (66%), Positives = 45/59 (76%)
Query: 57  KHYRGVRRRPWGKFAAEIRDSARHGQRIWLGTFETXXXXXXXXXXXXFRMRGAKALLNF 115
           KHYRGVR+RPWGKFAAEIRD A++G R+WLGTFET            FRMRG++ALLNF
Sbjct: 1   KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNF 59

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	166
1gcc_A	63	Ethylene responsive element binding factor 1; tran	6e-44

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A Length = 63

 Score =  138 bits (350), Expect = 6e-44
 Identities = 52/63 (82%), Positives = 59/63 (93%)

Query: 57  KHYRGVRRRPWGKFAAEIRDSARHGQRIWLGTFETAEEAALAYDRAAFRMRGAKALLNFP 116
           KHYRGVR+RPWGKFAAEIRD A++G R+WLGTFETAE+AALAYDRAAFRMRG++ALLNFP
Sbjct: 1   KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 60

Query: 117 AEV 119
             V
Sbjct: 61  LRV 63

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	166
1gcc_A	63	Ethylene responsive element binding factor 1; tran	99.93
3igm_B	77	PF14_0633 protein; AP2 domain, specific transcript	93.21
1u3e_M	174	HNH homing endonuclease; HNH catalytic motif, heli	85.24
1z1b_A	356	Integrase; protein-DNA complex, DNA binding protei	84.67

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A

Probab=99.93  E-value=9e-27  Score=158.78  Aligned_cols=62  Identities=82%  Similarity=1.425  Sum_probs=58.6

Q ss_pred             ceeEeEECCCCcEEEEEeeCCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCCCCCccc
Q 031071           58 HYRGVRRRPWGKFAAEIRDSARHGQRIWLGTFETAEEAALAYDRAAFRMRGAKALLNFPAEV  119 (166)
Q Consensus        58 ~YrGV~~r~~gkW~A~I~~~~~~gk~i~LGtF~T~eEAA~AYD~aa~~~~G~~A~lNFp~~~  119 (166)
                      +||||+++++|||+|+|+++..+|+++|||+|+|+||||+|||.++++++|..|.+|||.++
T Consensus         2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~~   63 (63)
T 1gcc_A            2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLRV   63 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTTC
T ss_pred             CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCcC
Confidence            69999998999999999998767899999999999999999999999999999999999864

>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}

Probab=93.21  E-value=0.057  Score=37.65  Aligned_cols=27  Identities=22%  Similarity=0.190  Sum_probs=21.7

Q ss_pred             CCCceeEeEECC-CCcEEEEEeeCCCCCeEE
Q 031071           55 SKKHYRGVRRRP-WGKFAAEIRDSARHGQRI   84 (166)
Q Consensus        55 ~~S~YrGV~~r~-~gkW~A~I~~~~~~gk~i   84 (166)
                      .+|+|.||++.+ .+.|.|...+   +|++.
T Consensus         4 ~~Sg~pGVsw~kR~~~WlA~W~e---~g~rr   31 (77)
T 3igm_B            4 MSSGYPGVSWNKRMCAWLAFFYD---GASRR   31 (77)
T ss_dssp             CCSSSTTEEEETTTTEEEEEEEE---TTEEE
T ss_pred             CCCCCCcEEeecCCceEEEEEec---CCeEe
Confidence            478999998766 5999999988   46554

>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1

Probab=85.24  E-value=0.13  Score=39.65  Aligned_cols=38  Identities=5%  Similarity=-0.150  Sum_probs=28.7

Q ss_pred             eeEeEECCCCcEEEEEeeCCCCCeEEecCCCCCHHHHHHHHH
Q 031071           59 YRGVRRRPWGKFAAEIRDSARHGQRIWLGTFETAEEAALAYD  100 (166)
Q Consensus        59 YrGV~~r~~gkW~A~I~~~~~~gk~i~LGtF~T~eEAA~AYD  100 (166)
                      ++||.+...++|.+.|..   + +..+||.|+|.+|||++|.
T Consensus       109 ~~g~~~~~~~k~~~vi~~---~-~~~~~~~f~s~~eAa~~~G  146 (174)
T 1u3e_M          109 SKAQQIAKIKNQKPIIVI---S-PDGIEKEYPSTKCACEELG  146 (174)
T ss_dssp             HHHHHHHHHHTCCCEEEE---C-TTSCEEEESCHHHHHHHHT
T ss_pred             eeeeeeccCCCCceEEEE---c-CCceEEeeCCHHHHHHHHC
Confidence            467654234678899987   3 5567999999999999964

>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*

Probab=84.67  E-value=0.95  Score=36.49  Aligned_cols=42  Identities=17%  Similarity=0.124  Sum_probs=31.7

Q ss_pred             eEeEECCCCcEEEEEeeCCCCCeEEecCCCCCHHHHHHHHHHHHHHh
Q 031071           60 RGVRRRPWGKFAAEIRDSARHGQRIWLGTFETAEEAALAYDRAAFRM  106 (166)
Q Consensus        60 rGV~~r~~gkW~A~I~~~~~~gk~i~LGtF~T~eEAA~AYD~aa~~~  106 (166)
                      .||+.++.|.|..+...   +||++.+|.  |..||..+..++...+
T Consensus        14 ~~v~~~~~g~~~~r~~~---~gk~~~~g~--t~~eA~~~a~~~~~~~   55 (356)
T 1z1b_A           14 PNLYIRNNGYYCYRDPR---TGKEFGLGR--DRRIAITEAIQANIEL   55 (356)
T ss_dssp             TTEEEETTTEEEEECTT---TCCEEEEES--CHHHHHHHHHHHHHHH
T ss_pred             ccceecCCCeEEEEeec---CCeEEECCC--CHHHHHHHHHHHHHHH
Confidence            46877778999988654   688999996  8888887776655444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	166
d1gcca_	63	d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cr	2e-36

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 63

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  118 bits (298), Expect = 2e-36
 Identities = 52/63 (82%), Positives = 59/63 (93%)

Query: 57  KHYRGVRRRPWGKFAAEIRDSARHGQRIWLGTFETAEEAALAYDRAAFRMRGAKALLNFP 116
           KHYRGVR+RPWGKFAAEIRD A++G R+WLGTFETAE+AALAYDRAAFRMRG++ALLNFP
Sbjct: 1   KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 60

Query: 117 AEV 119
             V
Sbjct: 61  LRV 63

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	166
d1gcca_	63	GCC-box binding domain {Mouse-ear cress (Arabidops	99.93

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.93  E-value=2.7e-27  Score=160.10  Aligned_cols=62  Identities=82%  Similarity=1.425  Sum_probs=58.6

Q ss_pred             ceeEeEECCCCcEEEEEeeCCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCCCCCccc
Q 031071           58 HYRGVRRRPWGKFAAEIRDSARHGQRIWLGTFETAEEAALAYDRAAFRMRGAKALLNFPAEV  119 (166)
Q Consensus        58 ~YrGV~~r~~gkW~A~I~~~~~~gk~i~LGtF~T~eEAA~AYD~aa~~~~G~~A~lNFp~~~  119 (166)
                      +||||+++++|||.|+|+++..+++++|||+|+|+||||+|||+++++++|..+.+|||.++
T Consensus         2 ~yrGVr~r~~gkw~A~Ir~~~~~~~r~~LGtf~t~eeAArAYD~aa~~~~G~~a~~NFP~~~   63 (63)
T d1gcca_           2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLRV   63 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTTC
T ss_pred             CcceEeECCCCCEEEEEecCCCCCcEeccccccCHHHHHHHHHHHHHHhcCCCcccCCCccC
Confidence            59999998899999999998778899999999999999999999999999999999999764