Citrus Sinensis ID: 031072

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160------
Protein Sequence
MTLTLTLTQKSIFILLLTLSLLLPLTATSSLKNLLESRGLPGGLFPENVKSYNLDQNGRLEVYLEGPCMAKFDTRVLFDSVVRANLSYGGLVGLEGLTQEELFLWLPVKGIIVNDPSSGLILIDIGLARKQLSLSLFEDPPVCKHIQVEGDLVDKARRKLGFQVQR
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHHHHHHccccccccHHHHHHHcccccccccccEEEEEEcccEEEEEEEcccEEEEEccEEEEccEEEEEEEcccEEcccccEEEEEEEEEEEEEEEEEcccccEEEEEEEEEEcccccccccccccccccccccHHHHHHHHHcccEEcc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHccccccccccccEEEEEccccEEEEEEcccEEEEEEEEEEEccEEEEEEEcccEccccEEEEEEEEEEEEEEEEEEccccccEEEEEEEEEEccccHHHccccccccccccccHHHHHcccccccEccc
Coil and Loop (DISEMBL)
MTLTLTLTQKSIFILLLTLSLLLPLTATSSLKNLlesrglpgglfpenvksynldqngrlevylegpcmakfdtrVLFDSVVRANLsygglvglegltqeelFLWLpvkgiivndpssglILIDIGLARKQLSlslfedppvckhiqvEGDLVDKARRKLGFQVQR
Flexible Loop (DISEMBL)
mtltltltQKSIFILLLTLSLLLPLTATSSLKNLLESRGLPGGLFPENVKSYNLDQNGRLEVYLEGPCMAKFDTRVLFDSVVRANLSYGGLVGLEGLTQEELFLWLPVKGIIVNDPSSGLILIDIGLARKQLSLSLFEDPPVCKHIQVEGDLVDKARRKLGFQVQR
Low Complexity Region (SEG)
MTLTLTLTQKSIFIllltlslllpltatsslKNLLESRGLPGGLFPENVKSYNLDQNGRLEVYLEGPCMAKFDTRVLFDSVVRANLSYGGLVGLEGLTQEELFLWLPVKGIIVNDPSSGLILIDIGLARKQLSLSLFEDPPVCKHIQVEGDLVDKARRKLGFQVQR
Disordered region (IsUnstruct)
***TLTLTQKSIFILLLTLSLLLPLTATSSLKNLLESRGLPGGLFPENVKSYNLDQNGRLEVYLEGPCMAKFDTRVLFDSVVRANLSYGGLVGLEGLTQEELFLWLPVKGIIVNDPSSGLILIDIGLARKQLSLSLFEDPPVCKHIQVEGDLVD************
Disordered Region (DISOPRED)
*********KSIFILLLTLSLLLPLTATSSLKNLLESRGLPGGLFPENVKSYNLDQNGRLEVYLEGPCMAKFDTRVLFDSVVRANLSYGGLVGLEGLTQEELFLWLPVKGIIVNDPSSGLILIDIGLARKQLSLSLFEDPP*****************KLGFQ***
Disordered Region (DISEMBL)
MTLTLTLTQKSIFILLLTLSLLLPLTATSSLKNLLESRGLPGGLFPENVKSYNLDQNGRLEVYLEGPCMAKFDTRVLFDSVVRANLSYGGLVGLEGLTQEELFLWLPVKGIIVNDPSSGLILIDIGLARKQLSLSLFEDPPVCKHIQVEGDLVDKARRKLGFQVQR
Disordered Region (DISPRO)
*TLTLTLTQKSIFILLLTLSLLLPLTATSSLKNLLESRGLPGGLFPENVKSYNLDQNGRLEVYLEGPCMAKFDTRVLFDSVVRANLSYGGLVGLEGLTQEELFLWLPVKGIIVNDPSSGLILIDIGLARKQLSLSLFEDPPVCK**********************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MTLTLTLTQKSIFILLLTLSLLLPLTATSSLKNLLESRGLPGGLFPENVKSYNLDQNGRLEVYLEGPCMAKFDTRVLFDSVVRANLSYGGLVGLEGLTQEELFLWLPVKGIIVNDPSSGLILIDIGLARKQLSLSLFEDPPVCKHIQVEGDLVDKARRKLGFQVQR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	166
255555101	161	conserved hypothetical protein [Ricinus	0.969	1.0	0.707	4e-56
224114219	162	predicted protein [Populus trichocarpa]	0.963	0.987	0.707	2e-54
297735888	154	unnamed protein product [Vitis vinifera]	0.891	0.961	0.707	1e-53
359496228	171	PREDICTED: uncharacterized protein LOC10	0.891	0.865	0.707	1e-53
359496218	171	PREDICTED: uncharacterized protein LOC10	0.891	0.865	0.707	2e-53
296090626	154	unnamed protein product [Vitis vinifera]	0.891	0.961	0.707	2e-53
118483192	163	unknown [Populus trichocarpa] gi|1184835	0.969	0.987	0.682	2e-49
147791426	166	hypothetical protein VITISV_006001 [Viti	0.861	0.861	0.662	5e-48
297840389	156	predicted protein [Arabidopsis lyrata su	0.831	0.884	0.657	1e-46
388512645	169	unknown [Lotus japonicus]	0.807	0.792	0.691	2e-46

>gi|255555101|ref|XP_002518588.1| conserved hypothetical protein [Ricinus communis] gi|223542433|gb|EEF43975.1| conserved hypothetical protein [Ricinus communis]

 Score =  222 bits (565), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 116/164 (70%), Positives = 137/164 (83%), Gaps = 3/164 (1%)

Query: 3   LTLTLTQKSIFILLLTLSLLLPLTATSSLKNLLESRGLPGGLFPENVKSYNLDQNGRLEV 62
           ++L+LT KS   L L+L +LL    +SS++NLL+S+GLPGGLFP+NVKSYNLD NGRLEV
Sbjct: 1   MSLSLTPKSFPPLFLSLFVLLSTACSSSIQNLLQSQGLPGGLFPDNVKSYNLDHNGRLEV 60

Query: 63  YLEGPCMAKFDTRVLFDSVVRANLSYGGLVGLEGLTQEELFLWLPVKGIIVNDPSSGLIL 122
           +L+GPC+AKF+TRV FDSVVRANLSYGGLVGLEGL+QEELFLW PVKGI+VNDPSSGLIL
Sbjct: 61  HLDGPCLAKFETRVYFDSVVRANLSYGGLVGLEGLSQEELFLWFPVKGIMVNDPSSGLIL 120

Query: 123 IDIGLARKQLSLSLFEDPPVCKHIQVEGDLVDKARRKLGFQVQR 166
            DIGLA KQLS SLFEDPPVCK    +G L++   RK+ F V R
Sbjct: 121 FDIGLAHKQLSRSLFEDPPVCK---PQGVLMENFGRKMAFAVMR 161

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224114219|ref|XP_002316700.1| predicted protein [Populus trichocarpa] gi|222859765|gb|EEE97312.1| predicted protein [Populus trichocarpa]

 Score =  216 bits (550), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 116/164 (70%), Positives = 131/164 (79%), Gaps = 4/164 (2%)

Query: 5   LTLTQKSI--FILLLTLSLLLPLTATSSLKNLLESRGLPGGLFPENVKSYNLDQNGRLEV 62
           ++LTQKS   F L L   L    T TS+L+NLL S+GLPGGLFP NVKSYNLDQNGRLEV
Sbjct: 1   MSLTQKSFLPFFLSLIFLLSTITTTTSTLQNLLRSQGLPGGLFPNNVKSYNLDQNGRLEV 60

Query: 63  YLEGPCMAKFDTRVLFDSVVRANLSYGGLVGLEGLTQEELFLWLPVKGIIVNDPSSGLIL 122
            L+GPCM K++ RV+FDSVVRANLSYGGL+GLEGL QEELFLW PVKG +VNDPSSGLIL
Sbjct: 61  QLDGPCMTKYEARVVFDSVVRANLSYGGLMGLEGLIQEELFLWFPVKGFLVNDPSSGLIL 120

Query: 123 IDIGLARKQLSLSLFEDPPVCKHIQVEGDLVDKARRKLGFQVQR 166
           +DIGLA KQLS SLFE PPVCK    E DL++   RK+GFQ QR
Sbjct: 121 VDIGLAHKQLSRSLFEVPPVCK--PREADLLENLGRKMGFQAQR 162

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297735888|emb|CBI18657.3| unnamed protein product [Vitis vinifera]

 Score =  214 bits (544), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 109/154 (70%), Positives = 124/154 (80%), Gaps = 6/154 (3%)

Query: 16  LLTLS---LLLPLTATSSLKNLLESRGLPGGLFPENVKSYNLDQNGRLEVYLEGPCMAKF 72
           +LT+S   +LLP T + S+++LL SRGLP GLFP NVKSYNLDQ GRLEVYLEGPCMAKF
Sbjct: 4   MLTISAILVLLPFTNSYSIQDLLRSRGLPAGLFPNNVKSYNLDQRGRLEVYLEGPCMAKF 63

Query: 73  DTRVLFDSVVRANLSYGGLVGLEGLTQEELFLWLPVKGIIVNDPSSGLILIDIGLARKQL 132
           + RV F+ VV ANLSYGGL+G+EGLTQEELFLWLPVK IIV+DP+SGLIL DIGLA KQL
Sbjct: 64  ENRVYFERVVTANLSYGGLIGVEGLTQEELFLWLPVKDIIVDDPNSGLILFDIGLAHKQL 123

Query: 133 SLSLFEDPPVCKHIQVEGDLVDKARRKLGFQVQR 166
           SLSLFEDPPVCK    +G L    R+   FQ QR
Sbjct: 124 SLSLFEDPPVCKP---QGVLEISGRKNKEFQTQR 154

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359496228|ref|XP_003635183.1| PREDICTED: uncharacterized protein LOC100853952 [Vitis vinifera]

 Score =  213 bits (543), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 109/154 (70%), Positives = 124/154 (80%), Gaps = 6/154 (3%)

Query: 16  LLTLS---LLLPLTATSSLKNLLESRGLPGGLFPENVKSYNLDQNGRLEVYLEGPCMAKF 72
           +LT+S   +LLP T + S+++LL SRGLP GLFP NVKSYNLDQ GRLEVYLEGPCMAKF
Sbjct: 21  MLTISAILVLLPFTNSYSIQDLLRSRGLPAGLFPNNVKSYNLDQRGRLEVYLEGPCMAKF 80

Query: 73  DTRVLFDSVVRANLSYGGLVGLEGLTQEELFLWLPVKGIIVNDPSSGLILIDIGLARKQL 132
           + RV F+ VV ANLSYGGL+G+EGLTQEELFLWLPVK IIV+DP+SGLIL DIGLA KQL
Sbjct: 81  ENRVYFERVVTANLSYGGLIGVEGLTQEELFLWLPVKDIIVDDPNSGLILFDIGLAHKQL 140

Query: 133 SLSLFEDPPVCKHIQVEGDLVDKARRKLGFQVQR 166
           SLSLFEDPPVCK    +G L    R+   FQ QR
Sbjct: 141 SLSLFEDPPVCKP---QGVLEISGRKNKEFQTQR 171

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359496218|ref|XP_003635179.1| PREDICTED: uncharacterized protein LOC100853750 [Vitis vinifera]

 Score =  213 bits (543), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 109/154 (70%), Positives = 124/154 (80%), Gaps = 6/154 (3%)

Query: 16  LLTLS---LLLPLTATSSLKNLLESRGLPGGLFPENVKSYNLDQNGRLEVYLEGPCMAKF 72
           +LT+S   +LLP T + S+++LL SRGLP GLFP NVKSYNLDQ GRLEVYLEGPCMAKF
Sbjct: 21  ILTISAILVLLPFTNSYSIQDLLRSRGLPAGLFPNNVKSYNLDQRGRLEVYLEGPCMAKF 80

Query: 73  DTRVLFDSVVRANLSYGGLVGLEGLTQEELFLWLPVKGIIVNDPSSGLILIDIGLARKQL 132
           + RV F+ VV ANLSYGGL+G+EGLTQEELFLWLPVK IIV+DP+SGLIL DIGLA KQL
Sbjct: 81  ENRVYFERVVTANLSYGGLIGVEGLTQEELFLWLPVKDIIVDDPNSGLILFDIGLAHKQL 140

Query: 133 SLSLFEDPPVCKHIQVEGDLVDKARRKLGFQVQR 166
           SLSLFEDPPVCK    +G L    R+   FQ QR
Sbjct: 141 SLSLFEDPPVCKP---QGFLEISGRKNKEFQTQR 171

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296090626|emb|CBI41010.3| unnamed protein product [Vitis vinifera]

 Score =  213 bits (543), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 109/154 (70%), Positives = 124/154 (80%), Gaps = 6/154 (3%)

Query: 16  LLTLS---LLLPLTATSSLKNLLESRGLPGGLFPENVKSYNLDQNGRLEVYLEGPCMAKF 72
           +LT+S   +LLP T + S+++LL SRGLP GLFP NVKSYNLDQ GRLEVYLEGPCMAKF
Sbjct: 4   ILTISAILVLLPFTNSYSIQDLLRSRGLPAGLFPNNVKSYNLDQRGRLEVYLEGPCMAKF 63

Query: 73  DTRVLFDSVVRANLSYGGLVGLEGLTQEELFLWLPVKGIIVNDPSSGLILIDIGLARKQL 132
           + RV F+ VV ANLSYGGL+G+EGLTQEELFLWLPVK IIV+DP+SGLIL DIGLA KQL
Sbjct: 64  ENRVYFERVVTANLSYGGLIGVEGLTQEELFLWLPVKDIIVDDPNSGLILFDIGLAHKQL 123

Query: 133 SLSLFEDPPVCKHIQVEGDLVDKARRKLGFQVQR 166
           SLSLFEDPPVCK    +G L    R+   FQ QR
Sbjct: 124 SLSLFEDPPVCKP---QGFLEISGRKNKEFQTQR 154

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118483192|gb|ABK93500.1| unknown [Populus trichocarpa] gi|118483514|gb|ABK93655.1| unknown [Populus trichocarpa]

 Score =  200 bits (508), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 112/164 (68%), Positives = 127/164 (77%), Gaps = 3/164 (1%)

Query: 5   LTLTQKSI--FILLLTLSLLLPLTATSSLKNLLESRGLPGGLFPENVKSYNLDQNGRLEV 62
           ++LTQ S   F L L   L    T TS+L+NLL+S GLPGGLFP NVKSY+LDQ+GRLEV
Sbjct: 1   MSLTQVSFLPFFLSLIFLLSTITTTTSTLQNLLQSHGLPGGLFPNNVKSYSLDQDGRLEV 60

Query: 63  YLEGPCMAKFDTRVLFDSVVRANLSYGGLVGLEGLTQEELFLWLPVKGIIVNDPSSGLIL 122
            L+G CM K++TRV+FDSVVRANLSYGGL+GLEGL QEELFLWLPVKG  VNDPSSGLI 
Sbjct: 61  QLDGLCMTKYETRVVFDSVVRANLSYGGLMGLEGLIQEELFLWLPVKGFEVNDPSSGLIS 120

Query: 123 IDIGLARKQLSLSLFEDPPVCKHIQVEGDLVDKARRKLGFQVQR 166
           +DIGLA KQLS SLFE PPVCK  Q   DL+    RK+G Q QR
Sbjct: 121 VDIGLAHKQLSRSLFEVPPVCKP-QGAADLLKNFGRKIGVQFQR 163

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147791426|emb|CAN76853.1| hypothetical protein VITISV_006001 [Vitis vinifera]

 Score =  195 bits (496), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 102/154 (66%), Positives = 116/154 (75%), Gaps = 11/154 (7%)

Query: 16  LLTLS---LLLPLTATSSLKNLLESRGLPGGLFPENVKSYNLDQNGRLEVYLEGPCMAKF 72
           +LT+S   +LLP T + S+++LL SRGLP GLFP NVKSYNLDQ GRLEVYLEGPCMAKF
Sbjct: 21  MLTISAILVLLPFTNSYSIQDLLRSRGLPAGLFPNNVKSYNLDQRGRLEVYLEGPCMAKF 80

Query: 73  DTRVLFDSVVRANLSYGGLVGLEGLTQEELFLWLPVKGIIVNDPSSGLILIDIGLARKQL 132
           + RV F+ VV ANLSYGGL+G+EGLTQEELFLWLPVK IIV+DP+SGLIL DIGLA KQL
Sbjct: 81  ENRVYFERVVTANLSYGGLIGVEGLTQEELFLWLPVKDIIVDDPNSGLILFDIGLAHKQL 140

Query: 133 SLSLFEDPPVCKHIQVEGDLVDKARRKLGFQVQR 166
           SLSLFE       I          R+   FQ QR
Sbjct: 141 SLSLFERSSWXLEI--------SGRKNKEFQTQR 166

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297840389|ref|XP_002888076.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297333917|gb|EFH64335.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  190 bits (483), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 94/143 (65%), Positives = 117/143 (81%), Gaps = 5/143 (3%)

Query: 26  TATSSLKNLLESRGLPGGLFPENVKSYNLD-QNGRLEVYLEGPCMAKFDTRVLFDSVVRA 84
           ++ SS++NLLE+RGLPGGLFP+NV+SY+LD + G LEV L+ PC A+F+ RV FD V+RA
Sbjct: 17  SSQSSIRNLLEARGLPGGLFPDNVESYSLDDKTGELEVQLQNPCFARFENRVYFDRVIRA 76

Query: 85  NLSYGGLVGLEGLTQEELFLWLPVKGIIVNDPSSGLILIDIGLARKQLSLSLFEDPPVCK 144
           NLSYGGLVGLEGLTQEELFLWLPVKGI VNDPSSGL+L DIG+A KQ+S SLFEDPPVC 
Sbjct: 77  NLSYGGLVGLEGLTQEELFLWLPVKGIAVNDPSSGLVLFDIGVAHKQISRSLFEDPPVCY 136

Query: 145 HIQVEGDLVDK-ARRKLGFQVQR 166
                G +++K  + K+  Q++R
Sbjct: 137 P---PGSIMEKLEKSKMDIQLKR 156

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388512645|gb|AFK44384.1| unknown [Lotus japonicus]

 Score =  190 bits (483), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 94/136 (69%), Positives = 111/136 (81%), Gaps = 2/136 (1%)

Query: 28  TSSLKNLLESRGLPGGLFPENVKSYNLDQNGRLEVYLEGPCMAKFDTRVLFDSVVRANLS 87
           +SS+  LL + GLP GLFPE VKSYNLDQ G LEV L+ PCM K+DTR+LF++VVRANLS
Sbjct: 33  SSSIHELLRNYGLPAGLFPETVKSYNLDQTGVLEVKLDQPCMTKYDTRMLFETVVRANLS 92

Query: 88  YGGLVGLEGLTQEELFLWLPVKGIIVNDPSSGLILIDIGLARKQLSLSLFEDPPVCKHIQ 147
           +G L GLEGL+QEELFLWLPVKGIIVNDPSSGLILIDIGLA KQLSLSLFE PP+C+   
Sbjct: 93  FGQLKGLEGLSQEELFLWLPVKGIIVNDPSSGLILIDIGLAYKQLSLSLFEVPPICRSQG 152

Query: 148 VEGDLVDKARRKLGFQ 163
           +  ++  + R+  GFQ
Sbjct: 153 LSRNI--EGRKSFGFQ 166

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	166
TAIR|locus:505006197	156	AT1G61667 "AT1G61667" [Arabido	0.795	0.846	0.664	1.2e-44
TAIR|locus:2172094	161	AT5G54530 "AT5G54530" [Arabido	0.789	0.813	0.604	7e-38
TAIR|locus:2079701	271	AT3G07460 "AT3G07460" [Arabido	0.698	0.428	0.478	5.9e-25
TAIR|locus:2079601	169	AT3G07470 [Arabidopsis thalian	0.692	0.680	0.449	1.4e-23
TAIR|locus:2171297	195	AT5G16380 "AT5G16380" [Arabido	0.740	0.630	0.459	5.5e-22
TAIR|locus:505006187	175	AT1G55265 [Arabidopsis thalian	0.662	0.628	0.383	6.7e-17
TAIR|locus:2147610	181	AT5G19860 "AT5G19860" [Arabido	0.728	0.668	0.330	8.8e-15
TAIR|locus:2063824	179	AT2G03350 "AT2G03350" [Arabido	0.638	0.592	0.288	9.7e-09
TAIR|locus:505006095	149	AT1G02813 [Arabidopsis thalian	0.644	0.718	0.267	4.8e-07
TAIR|locus:505006096	166	AT1G02816 "AT1G02816" [Arabido	0.644	0.644	0.265	7.8e-07

TAIR|locus:505006197 AT1G61667 "AT1G61667" [Arabidopsis thaliana (taxid:3702)]

 Score = 470 (170.5 bits), Expect = 1.2e-44, P = 1.2e-44
 Identities = 91/137 (66%), Positives = 112/137 (81%)

Query:    32 KNLLESRGLPGGLFPENVKSYNLD-QNGRLEVYLEGPCMAKFDTRVLFDSVVRANLSYGG 90
             +NLLE+RGLPGGLFP+NV+SY+LD + G LEV L+ PC A+F+ RV FD V++ANLSYGG
Sbjct:    23 RNLLEARGLPGGLFPDNVESYSLDDKTGELEVQLQNPCFARFENRVYFDRVIKANLSYGG 82

Query:    91 LVGLEGLTQEELFLWLPVKGIIVNDPSSGLILIDIGLARKQLSLSLFEDPPVCKHIQVEG 150
             LVGLEGLTQEELFLWLPVKGI VNDPSSGL+L DIG+A KQ+S SLFEDPPVC      G
Sbjct:    83 LVGLEGLTQEELFLWLPVKGIAVNDPSSGLVLFDIGVAHKQISRSLFEDPPVC---YPPG 139

Query:   151 DLVDKARR-KLGFQVQR 166
              +++K  + K+  Q++R
Sbjct:   140 SIMEKLEKSKMDIQLKR 156

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2172094 AT5G54530 "AT5G54530" [Arabidopsis thaliana (taxid:3702)]

 Score = 406 (148.0 bits), Expect = 7.0e-38, P = 7.0e-38
 Identities = 81/134 (60%), Positives = 101/134 (75%)

Query:    33 NLLESRGLPGGLFPENVKSYNLDQNGRLEVYLEGPCMAKFDTRVLFDSVVRANLSYGGLV 92
             ++L S GLP GL P+ V SY L  +GRLEV+L  PC AKF+T V F++VVR NLSYG LV
Sbjct:    31 DVLRSEGLPAGLLPQEVDSYILHNDGRLEVFLAAPCYAKFETNVHFEAVVRGNLSYGSLV 90

Query:    93 GLEGLTQEELFLWLPVKGIIVNDPSSGLILIDIGLARKQLSLSLFEDPPVCKHIQVEGDL 152
             G+EGL+Q+ELFLWL VK I+V +P+SG+I+ DIG+A KQLSLSLFEDPP CK    +G L
Sbjct:    91 GVEGLSQKELFLWLQVKDIVVENPNSGVIVFDIGVAFKQLSLSLFEDPPKCKP---DGVL 147

Query:   153 VDKARRKLGFQVQR 166
               K RR  GF+ Q+
Sbjct:   148 KKKMRRDRGFEAQK 161

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2079701 AT3G07460 "AT3G07460" [Arabidopsis thaliana (taxid:3702)]

 Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
 Identities = 57/119 (47%), Positives = 78/119 (65%)

Query:    34 LLESRGLPGGLFPENVKSYNLD-QNGRLEVYLEGPCMAKFDTRVLFDSVVRANLSYGGLV 92
             +L + GLP GLFP+ VK + ++ + GR  VYL   C AK++T + +D +V   + Y  + 
Sbjct:    33 ILLANGLPLGLFPKGVKGFTVNGETGRFSVYLNQSCQAKYETELHYDEIVSGTIGYAQIR 92

Query:    93 GLEGLTQEELFLWLPVKGIIVNDPSSGLILIDIGLARKQLSLSLFEDPPVCKHIQVEGD 151
              L G++ +ELFLWL VKGI V+ PSSGLI  D+G+ RKQ SLSLFE P  C  + V GD
Sbjct:    93 DLSGISAQELFLWLQVKGIRVDVPSSGLIFFDVGVLRKQYSLSLFETPRDC--VAVRGD 149

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005773 "vacuole" evidence=IDA

TAIR|locus:2079601 AT3G07470 [Arabidopsis thaliana (taxid:3702)]

 Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
 Identities = 53/118 (44%), Positives = 75/118 (63%)

Query:    34 LLESRGLPGGLFPENVKSYNLD-QNGRLEVYLEGPCMAKFDTRVLFDSVVRANLSYGGLV 92
             +L + GLP G+FP+ V+ +  D + GR  VYL   C AK++T + +D+ +   +    + 
Sbjct:    34 ILLANGLPSGIFPKGVREFTFDVETGRFSVYLNQACEAKYETEIHYDANITGTIGSAQIS 93

Query:    93 GLEGLTQEELFLWLPVKGIIVNDPSSGLILIDIGLARKQLSLSLFEDPPVCKHIQVEG 150
              L G++ +ELFLW PVKGI V+ PSSGLI  D+G+ RKQ SLSLFE P  C  + V G
Sbjct:    94 DLSGISAQELFLWFPVKGIRVDVPSSGLIYFDVGVVRKQYSLSLFETPRDC--VPVRG 149

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005773 "vacuole" evidence=IDA

TAIR|locus:2171297 AT5G16380 "AT5G16380" [Arabidopsis thaliana (taxid:3702)]

 Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
 Identities = 57/124 (45%), Positives = 76/124 (61%)

Query:    35 LESRGLPGGLFPENVKSYNLD-QNGRLEVYLEGPCMAKFDTRVLFDSVVRANLSYGGLVG 93
             L    LP G+ P+ V ++++D + GR  V L  PC AKF+ +  FD  +   LS G +  
Sbjct:    35 LRESNLPAGIVPKGVTNFSIDIKTGRFTVALPVPCDAKFENQFHFDYNISGVLSDGRIGN 94

Query:    94 LEGLTQEELFLWLPVKGIIVNDPSSGLILIDIGLARKQLSLSLFEDPPVCKHIQVEGDLV 153
             L G+TQ+ELFLW  VKGI V+  SSGLI  D+G+A KQLSLSLFE P  C   + +   V
Sbjct:    95 LSGVTQKELFLWFAVKGIHVDPQSSGLIHFDVGVADKQLSLSLFESPRDCTAAESQPRAV 154

Query:   154 DKAR 157
             D +R
Sbjct:   155 DLSR 158

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:505006187 AT1G55265 [Arabidopsis thaliana (taxid:3702)]

 Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
 Identities = 43/112 (38%), Positives = 60/112 (53%)

Query:    33 NLLESRGLPGGLFPENVKSYNLDQNGRLEVYLEGPCMAKF-DTRVLFDSVVRANLSYGGL 91
             +LL   G P GL P NVKSY +  +G   V L   C  KF D  V +   +   LSYG +
Sbjct:    56 DLLPRYGFPKGLLPNNVKSYTISDDGDFTVDLISSCYVKFSDQLVFYGKNIAGKLSYGSV 115

Query:    92 VGLEGLTQEELFLWLPVKGIIVNDPSSGLILIDIGLARKQLSLSLFEDPPVC 143
               + G+  +E FLWLP+  +  +DPSS  ++  +G   K L  S+FE+ P C
Sbjct:   116 KDVRGIQAKEAFLWLPITAM-ESDPSSATVVFSVGFVSKTLPASMFENVPSC 166

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005773 "vacuole" evidence=IDA

TAIR|locus:2147610 AT5G19860 "AT5G19860" [Arabidopsis thaliana (taxid:3702)]

 Score = 188 (71.2 bits), Expect = 8.8e-15, P = 8.8e-15
 Identities = 40/121 (33%), Positives = 59/121 (48%)

Query:    34 LLESRGLPGGLFPENVKSYNLDQNGRLEVYLEGPCMAKFDTRVLFDSVVRANLSYGGLVG 93
             LL   GLP GL P+ V  + L  +GR  V+L   C  +FD  V +D  +   + YG +  
Sbjct:    39 LLPKYGLPSGLLPDTVTDFTLSDDGRFVVHLPNSCEIEFDYLVHYDKTISGRIGYGSITE 98

Query:    94 LEGLTQEELFLWLPVKGIIVNDPSSGLILIDIGLARKQLSLSLFEDPPVCKHIQVEGDLV 153
             L+G+  ++ F+WL V  I V+ P S  I   +G   K+L +  F+    C    V G   
Sbjct:    99 LKGIQVKKFFIWLDVDEIKVDLPPSDSIYFKVGFINKKLDIDQFKTIHSCHDNGVSGSCG 158

Query:   154 D 154
             D
Sbjct:   159 D 159

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0005773 "vacuole" evidence=IDA

TAIR|locus:2063824 AT2G03350 "AT2G03350" [Arabidopsis thaliana (taxid:3702)]

 Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
 Identities = 32/111 (28%), Positives = 58/111 (52%)

Query:    33 NLLESRGLPGGLFPENVKSYNLDQN-GRLEVYLEGPCMAKFD--TRVLFDSVVRANLSYG 89
             +LL+   LP GLFP+N+  Y  D+   +L V+   PC   F   + + + + V+  L  G
Sbjct:    61 DLLKEYNLPPGLFPQNIICYEFDETKNKLTVFFSSPCEVTFKDGSAIRYATRVKGILLRG 120

Query:    90 GLVGLEGLTQEELFLWLPVKGIIVNDPSSGLILIDIGLARKQLSLSLFEDP 140
              L+G+EG+ + ++ +W+ V  I V    S  +    G+ +K  S  +++ P
Sbjct:   121 KLMGVEGM-KTKVLVWVKVTTISVESSKSDKLWFTAGV-KKSRSKDVYDTP 169

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:505006095 AT1G02813 [Arabidopsis thaliana (taxid:3702)]

 Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
 Identities = 30/112 (26%), Positives = 55/112 (49%)

Query:    34 LLESRGLPGGLFPENVKSYNLDQN-GRLEVYLEGPCMAKFDT-RVLFDSVVRANLSYGGL 91
             +LE+  LP G+ PE V  Y+L++  G  +V     C    D+ +V +  V+   ++ G +
Sbjct:    28 VLENYTLPRGILPEGVHDYDLNRRTGVFKVRFNTTCQFSIDSYKVKYKPVISGIITRGRV 87

Query:    92 VGLEGLTQEELFLWLPVKGIIVNDPSSGLILIDIGLARKQLSLSLFEDPPVC 143
             + L G++ + LF W+ +  +   D     +   +G A ++ S   F D P C
Sbjct:    88 IRLIGVSVKVLFFWINISEVS-RDGDD--VEFFVGAASEEFSSKYFVDSPKC 136

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0010584 "pollen exine formation" evidence=RCA

TAIR|locus:505006096 AT1G02816 "AT1G02816" [Arabidopsis thaliana (taxid:3702)]

 Score = 113 (44.8 bits), Expect = 7.8e-07, P = 7.8e-07
 Identities = 30/113 (26%), Positives = 49/113 (43%)

Query:    34 LLESRGLPGGLFPENVKSYNLDQN-GRLEVYLEGPCMAKFDTRVLFD--SVVRANLSYGG 90
             LL+S   P G+ P+ V SY+LD++ G+   Y    C          D  S +   +S   
Sbjct:    35 LLQSYNFPVGILPKGVVSYDLDKSTGQFHAYFNKSCSFALQGSYQLDYKSTISGYISENK 94

Query:    91 LVGLEGLTQEELFLWLPVKGIIVNDPSSGLILIDIGLARKQLSLSLFEDPPVC 143
             +  L G+  + LFLWL +  +I N      +   +G+      +  F + P C
Sbjct:    95 ITKLTGVKVKVLFLWLNIVEVIRNGDE---LEFSVGITSANFEIDEFYESPQC 144

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	166
pfam04398	108	pfam04398, DUF538, Protein of unknown function, DU	4e-33

>gnl|CDD|218064 pfam04398, DUF538, Protein of unknown function, DUF538

 Score =  113 bits (284), Expect = 4e-33
 Identities = 41/110 (37%), Positives = 55/110 (50%), Gaps = 4/110 (3%)

Query: 30  SLKNLLESRGLPGGLFPENVKSYNLDQN-GRLEVYLEGPCMAKF-DTRVLFDSVVRANLS 87
           +   LLE  GLP GL P+ V  Y LD+  G+  VYL G C   F    V +D  V   +S
Sbjct: 1   TAYELLEEYGLPVGLLPKGVTEYTLDETTGKFWVYLNGTCEFTFEGYSVRYDPTVTGYIS 60

Query: 88  YGGLVGLEGLTQEELFLWLPVKGIIVNDPSSGLILIDIGLARKQLSLSLF 137
            G L GLEG+  + LFLW+P+  I V+D     +   +G+  K      F
Sbjct: 61  KGRLSGLEGVKVKVLFLWVPIVEISVDD--GDKLTFSVGVLSKSFPADAF 108

This family consists of several plant proteins of unknown function. Length = 108

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	166
PF04398	110	DUF538: Protein of unknown function, DUF538; Inter	100.0

>PF04398 DUF538: Protein of unknown function, DUF538; InterPro: IPR007493 This family consists of several plant proteins of unknown function

Probab=100.00  E-value=1.3e-44  Score=274.07  Aligned_cols=108  Identities=36%  Similarity=0.654  Sum_probs=81.3

Q ss_pred             cHHHHHHhCCCCCCCCCCCceeeEeCCC-ceEEEEEcCceEEEec-ceEEEccEEEEEEecCeeeccccceEEEEEeecc
Q 031072           30 SLKNLLESRGLPGGLFPENVKSYNLDQN-GRLEVYLEGPCMAKFD-TRVLFDSVVRANLSYGGLVGLEGLTQEELFLWLP  107 (166)
Q Consensus        30 ta~elL~~~gLP~GLLP~~V~~Y~l~~t-G~f~V~l~~~C~~~f~-~~v~Y~~~ItG~i~~GkI~~L~GVk~K~lf~Wv~  107 (166)
                      ||||+|++||||+||||++|++|++|++ |+|||+|+++|+|+|+ +.|+|+++|||+|++|+|++|+|||+|++|+|++
T Consensus         1 tayelL~~~glP~GLLP~~v~~y~l~~~tG~f~v~l~~~C~~~~~~~~v~Y~~~ItG~i~~g~i~~L~GVk~k~l~~W~~   80 (110)
T PF04398_consen    1 TAYELLEEYGLPRGLLPLGVTEYGLNRDTGFFWVKLKSPCEFRFEGYLVSYDSEITGYIEKGKIKNLTGVKVKELFLWVP   80 (110)
T ss_dssp             --HHHHHHHS-TT-TTTSSS-EEEE-TTT-SEEEE-SS-EEEESTTSEEEE-SEEEEEE-SS-EEEEES-EEE-SSSEES
T ss_pred             CHHHhHHHcCCCCCcCCCCceEEEEecCCcEEEEEecCCEEEEEEEEEEEEcCeEEEEECCCcCccccCEEEEEEEEEee
Confidence            7999999999999999999999999965 9999999999999998 4999999999999999999999999999999999


Q ss_pred             eeEEEecCCCCCeEEEEEceeeeeecccccCCC
Q 031072          108 VKGIIVNDPSSGLILIDIGLARKQLSLSLFEDP  140 (166)
Q Consensus       108 V~eI~vd~~~~~~I~F~vG~isksFP~s~F~~~  140 (166)
                      |+||.+   ++++|+|++|.++++||+++|+++
T Consensus        81 v~~i~~---~~~~i~F~~g~~s~sfp~~~F~~s  110 (110)
T PF04398_consen   81 VTEISV---DGDKIYFKVGGISKSFPVSAFEES  110 (110)
T ss_dssp             ---BEE----SSSEE-TTSSSS----TTTTSS-
T ss_pred             EEEEEE---cCCEEEEEEeeEeccCCHHHhccC
Confidence            999999   479999999999999999999985

; PDB: 1YDU_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	166
1ydu_A	170	AT5G01610; DUF538, structural genomics, protein st	8e-30

>1ydu_A AT5G01610; DUF538, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG unknown function; NMR {Arabidopsis thaliana} SCOP: b.162.1.1 Length = 170

 Score =  106 bits (265), Expect = 8e-30
 Identities = 26/121 (21%), Positives = 50/121 (41%), Gaps = 8/121 (6%)

Query: 30  SLKNLLESRGLPGGLFPENVKSYNLDQ-NGRLEVYLEGPCMAKFD--TRVLFDSVVRANL 86
            L  LL+   LP G+FP +  +Y  D+   +L V +   C   +   + + F + V  +L
Sbjct: 53  PLPELLKEYDLPIGIFPGDATNYEFDEETKKLTVLIPSICEVGYKDSSVLKFTTTVTGHL 112

Query: 87  SYGGLVGLEGLTQEELFLWLPVKGIIVNDPSSGLILIDIGLARKQLSLSLFEDPPVCKHI 146
             G L  +EG+ + ++ +W+ V  I  +      +    G+  K  S   +        +
Sbjct: 113 EKGKLTDVEGI-KTKVMIWVKVTSISTDASK---VYFTAGMK-KSRSRDAYGVQRNGLRV 167

Query: 147 Q 147
            
Sbjct: 168 D 168

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	166
1ydu_A	170	AT5G01610; DUF538, structural genomics, protein st	100.0

>1ydu_A AT5G01610; DUF538, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG unknown function; NMR {Arabidopsis thaliana} SCOP: b.162.1.1

Probab=100.00  E-value=3.4e-43  Score=282.70  Aligned_cols=118  Identities=22%  Similarity=0.459  Sum_probs=111.2

Q ss_pred             cCCCCCcHHHHHHhCCCCCCCCCCCceeeEeC-CCceEEEEEcCceEEEec--ceEEEccEEEEEEecCeeeccccceEE
Q 031072           24 PLTATSSLKNLLESRGLPGGLFPENVKSYNLD-QNGRLEVYLEGPCMAKFD--TRVLFDSVVRANLSYGGLVGLEGLTQE  100 (166)
Q Consensus        24 ~~~~~~ta~elL~~~gLP~GLLP~~V~~Y~l~-~tG~f~V~l~~~C~~~f~--~~v~Y~~~ItG~i~~GkI~~L~GVk~K  100 (166)
                      ...+.+++||+|++||||+||||++|++|++| +||+|||+|+++|+|+|+  ++|+|+++|||+|++|+|++|+|||+|
T Consensus        47 kg~~~~ta~elL~e~gLP~GLLP~~V~~Y~l~~~tG~f~V~l~~~C~~~f~~~~~v~Y~~~VtG~l~~GkI~~L~GVk~K  126 (170)
T 1ydu_A           47 KGKMQKPLPELLKEYDLPIGIFPGDATNYEFDEETKKLTVLIPSICEVGYKDSSVLKFTTTVTGHLEKGKLTDVEGIKTK  126 (170)
T ss_dssp             TTTTTSSCHHHHHHHSCTTCTTTSSSCEEEECTTTCSEEEECSSCEEEESTTSSEEEECSEEEEEECSSCEEEEESCEEE
T ss_pred             cccccccHHHHHHHcCCCCCcCCCCCeEEEEECCCcEEEEEeCCCEEEEecCccEEEEcCEEEEEEcCCcCccccCEEEE
Confidence            34667999999999999999999999999998 579999999999999996  699999999999999999999999999


Q ss_pred             EEEeecceeEEEecCCCCCeEEEEEceeeeeecccccCCCCCCCcc
Q 031072          101 ELFLWLPVKGIIVNDPSSGLILIDIGLARKQLSLSLFEDPPVCKHI  146 (166)
Q Consensus       101 ~lf~Wv~V~eI~vd~~~~~~I~F~vG~isksFP~s~F~~~p~C~~~  146 (166)
                      +| +|++|+||.|+   +++|+|++|+ +++||+++|+.+|+|..+
T Consensus       127 ~L-lWv~V~eI~v~---~~kI~F~vGi-~ksfp~saFe~~~~c~~~  167 (170)
T 1ydu_A          127 VM-IWVKVTSISTD---ASKVYFTAGM-KKSRSRDAYGVQRNGLRV  167 (170)
T ss_dssp             SS-SEESCCCBEEC---SSSEECTTSS-SSCCCHHHHSSCCCCCCT
T ss_pred             EE-EEeeEEEEEEe---CCEEEEEEcC-cccccHHHhcCCcCCccc
Confidence            99 99999999993   6899999995 999999999999999874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	166
d1ydua1	169	b.162.1.1 (A:2-170) Hypothetical protein At5g01610	6e-31

>d1ydua1 b.162.1.1 (A:2-170) Hypothetical protein At5g01610 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 169

class: All beta proteins
fold: At5g01610-like
superfamily: At5g01610-like
family: At5g01610-like
domain: Hypothetical protein At5g01610
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  107 bits (270), Expect = 6e-31
 Identities = 26/118 (22%), Positives = 49/118 (41%), Gaps = 8/118 (6%)

Query: 29  SSLKNLLESRGLPGGLFPENVKSYNLDQ-NGRLEVYLEGPCMAKFD--TRVLFDSVVRAN 85
             L  LL+   LP G+FP +  +Y  D+   +L V +   C   +   + + F + V  +
Sbjct: 51  KPLPELLKEYDLPIGIFPGDATNYEFDEETKKLTVLIPSICEVGYKDSSVLKFTTTVTGH 110

Query: 86  LSYGGLVGLEGLTQEELFLWLPVKGIIVNDPSSGLILIDIGLARKQLSLSLFEDPPVC 143
           L  G L  +EG+ + ++ +W+ V  I  +      +    G+  K  S   +      
Sbjct: 111 LEKGKLTDVEGI-KTKVMIWVKVTSISTDASK---VYFTAGMK-KSRSRDAYGVQRNG 163

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	166
d1ydua1	169	Hypothetical protein At5g01610 {Thale cress (Arabi	100.0

>d1ydua1 b.162.1.1 (A:2-170) Hypothetical protein At5g01610 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: At5g01610-like
superfamily: At5g01610-like
family: At5g01610-like
domain: Hypothetical protein At5g01610
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=6e-42  Score=273.09  Aligned_cols=113  Identities=23%  Similarity=0.483  Sum_probs=105.9

Q ss_pred             CCcHHHHHHhCCCCCCCCCCCceeeEeCC-CceEEEEEcCceEEEec--ceEEEccEEEEEEecCeeeccccceEEEEEe
Q 031072           28 TSSLKNLLESRGLPGGLFPENVKSYNLDQ-NGRLEVYLEGPCMAKFD--TRVLFDSVVRANLSYGGLVGLEGLTQEELFL  104 (166)
Q Consensus        28 ~~ta~elL~~~gLP~GLLP~~V~~Y~l~~-tG~f~V~l~~~C~~~f~--~~v~Y~~~ItG~i~~GkI~~L~GVk~K~lf~  104 (166)
                      .++++|||++||||+||||++|++|++|+ ||+|||+|+++|+++|+  ++|+|+++|||+|++|+|++|+|||+| +|+
T Consensus        50 ~k~l~ELL~eygLP~GLLP~~V~~Y~l~~~TG~f~V~l~~~C~~~f~~sy~v~Y~~~VtG~ls~Gki~~L~GVkvK-lfl  128 (169)
T d1ydua1          50 QKPLPELLKEYDLPIGIFPGDATNYEFDEETKKLTVLIPSICEVGYKDSSVLKFTTTVTGHLEKGKLTDVEGIKTK-VMI  128 (169)
T ss_dssp             TSSCHHHHHHHSCTTCTTTSSSCEEEECTTTCSEEEECSSCEEEESTTSSEEEECSEEEEEECSSCEEEEESCEEE-SSS
T ss_pred             CCCHHHHHHhcCCCCccCCCCceEEEEECCCcEEEEEeCCCEEEEecCceEEEEcCEEEEEEcCCcCccccceEEE-EEE
Confidence            57899999999999999999999999985 69999999999999996  799999999999999999999999999 789


Q ss_pred             ecceeEEEecCCCCCeEEEEEceeeeeecccccCCCCCCCc
Q 031072          105 WLPVKGIIVNDPSSGLILIDIGLARKQLSLSLFEDPPVCKH  145 (166)
Q Consensus       105 Wv~V~eI~vd~~~~~~I~F~vG~isksFP~s~F~~~p~C~~  145 (166)
                      |++|+||.+|   +++|+|++| ++|+||+++|+.+++|..
T Consensus       129 Wv~V~eI~vd---~~kI~F~vG-I~KsfP~daFE~prdg~~  165 (169)
T d1ydua1         129 WVKVTSISTD---ASKVYFTAG-MKKSRSRDAYGVQRNGLR  165 (169)
T ss_dssp             EESCCCBEEC---SSSEECTTS-SSSCCCHHHHSSCCCCCC
T ss_pred             EEEEEEEEEc---CCeEEEEec-ccccCCHHHccCCcccee
Confidence            9999999997   589999999 599999999988777665