Citrus Sinensis ID: 031129

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-----
Protein Sequence
MSSAFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD
Secondary Structure (PSIPRED)
cccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHcEEEEEEccccHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccc
Coil and Loop (DISEMBL)
mssafsgdetapffGFLGAAAALVFSCMGaaygtaksgvgvasmgvmrpelvmKSIVPVVMAGVLGIYGLIIAVIIStginpkaksyylfdGYAHLSSGLACGLAGLSAGMAIGIVGDagvranaqqpkLFVGMILILIFAEALALYGLIVGIILssragqsrad
Flexible Loop (DISEMBL)
mssafsgdETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIIlssragqsrad
Low Complexity Region (SEG)
MSSAFSGDETAPffgflgaaaalvfSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHlssglacglaglsagmaIGIVGDAGVRANAQQPKLFVGMililifaealalYGLIVGIILSSRAGQSRAD
Disordered region (IsUnstruct)
**********APFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIIL**********
Disordered Region (DISOPRED)
***A***DETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSS*A******
Disordered Region (DISEMBL)
********ETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSS********
Disordered Region (DISPRO)
*****SGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSR*******
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSSAFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	165	2.2.26 [Sep-21-2011]
Q96473	165	V-type proton ATPase 16 k	N/A	no	1.0	1.0	0.993	6e-86
Q43434	165	V-type proton ATPase 16 k	N/A	no	1.0	1.0	0.987	2e-85
P68161	165	V-type proton ATPase 16 k	N/A	no	1.0	1.0	0.981	2e-85
P68162	165	V-type proton ATPase 16 k	N/A	no	1.0	1.0	0.981	2e-85
P59228	165	V-type proton ATPase 16 k	yes	no	1.0	1.0	0.981	3e-85
P59229	166	V-type proton ATPase 16 k	yes	no	0.993	0.987	0.987	9e-85
O22552	164	V-type proton ATPase 16 k	N/A	no	0.987	0.993	0.987	2e-84
Q40585	165	V-type proton ATPase 16 k	N/A	no	1.0	1.0	0.975	2e-84
P23957	165	V-type proton ATPase 16 k	N/A	no	1.0	1.0	0.975	2e-84
P0DH94	164	V-type proton ATPase 16 k	yes	no	0.987	0.993	0.987	2e-84

>sp|Q96473|VATL_KALDA V-type proton ATPase 16 kDa proteolipid subunit OS=Kalanchoe daigremontiana PE=2 SV=1

 Score =  315 bits (808), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 164/165 (99%), Positives = 164/165 (99%)

Query: 1   MSSAFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV 60
           MSS FSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV
Sbjct: 1   MSSTFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV 60

Query: 61  MAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAG 120
           MAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAG
Sbjct: 61  MAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAG 120

Query: 121 VRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 165
           VRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD
Sbjct: 121 VRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 165

Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells. Necessary for the crassulacean acid metabolism.
Kalanchoe daigremontiana (taxid: 23013)

>sp|Q43434|VATL_GOSHI V-type proton ATPase 16 kDa proteolipid subunit OS=Gossypium hirsutum GN=CVA16-2 PE=2 SV=1

 Score =  314 bits (805), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 163/165 (98%), Positives = 164/165 (99%)

Query: 1   MSSAFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV 60
           MSS FSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV
Sbjct: 1   MSSTFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV 60

Query: 61  MAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAG 120
           MAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAG
Sbjct: 61  MAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAG 120

Query: 121 VRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 165
           VRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRA+
Sbjct: 121 VRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAE 165

Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Gossypium hirsutum (taxid: 3635)

>sp|P68161|VATL_MESCR V-type proton ATPase 16 kDa proteolipid subunit OS=Mesembryanthemum crystallinum GN=VMAC1 PE=2 SV=1

 Score =  313 bits (803), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 162/165 (98%), Positives = 164/165 (99%)

Query: 1   MSSAFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV 60
           MS+ F+GDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV
Sbjct: 1   MSTVFNGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV 60

Query: 61  MAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAG 120
           MAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAG
Sbjct: 61  MAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAG 120

Query: 121 VRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 165
           VRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD
Sbjct: 121 VRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 165

Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Mesembryanthemum crystallinum (taxid: 3544)

>sp|P68162|VATL_BETVU V-type proton ATPase 16 kDa proteolipid subunit OS=Beta vulgaris GN=VMAC1 PE=2 SV=1

 Score =  313 bits (803), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 162/165 (98%), Positives = 164/165 (99%)

Query: 1   MSSAFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV 60
           MS+ F+GDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV
Sbjct: 1   MSTVFNGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV 60

Query: 61  MAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAG 120
           MAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAG
Sbjct: 61  MAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAG 120

Query: 121 VRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 165
           VRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD
Sbjct: 121 VRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 165

Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Beta vulgaris (taxid: 161934)

>sp|P59228|VATL2_ARATH V-type proton ATPase 16 kDa proteolipid subunit c2 OS=Arabidopsis thaliana GN=VHA-C2 PE=2 SV=1

 Score =  313 bits (802), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 162/165 (98%), Positives = 164/165 (99%)

Query: 1   MSSAFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV 60
           M+S FSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV
Sbjct: 1   MASTFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV 60

Query: 61  MAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAG 120
           MAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAG
Sbjct: 61  MAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAG 120

Query: 121 VRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 165
           VRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRA+
Sbjct: 121 VRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAE 165

Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Arabidopsis thaliana (taxid: 3702)

>sp|P59229|VATL4_ARATH V-type proton ATPase 16 kDa proteolipid subunit c4 OS=Arabidopsis thaliana GN=VHA-C4 PE=2 SV=1

 Score =  311 bits (798), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 162/164 (98%), Positives = 163/164 (99%)

Query: 2   SSAFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVM 61
           SS FSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVM
Sbjct: 3   SSGFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVM 62

Query: 62  AGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGV 121
           AGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGV
Sbjct: 63  AGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGV 122

Query: 122 RANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 165
           RANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRA+
Sbjct: 123 RANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAE 166

Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Arabidopsis thaliana (taxid: 3702)

>sp|O22552|VATL_VIGRR V-type proton ATPase 16 kDa proteolipid subunit OS=Vigna radiata var. radiata PE=2 SV=1

 Score =  311 bits (796), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 161/163 (98%), Positives = 163/163 (100%)

Query: 3   SAFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMA 62
           ++FSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMA
Sbjct: 2   ASFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMA 61

Query: 63  GVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVR 122
           GVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVR
Sbjct: 62  GVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVR 121

Query: 123 ANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 165
           ANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD
Sbjct: 122 ANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 164

Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Vigna radiata var. radiata (taxid: 3916)

>sp|Q40585|VATL_TOBAC V-type proton ATPase 16 kDa proteolipid subunit OS=Nicotiana tabacum PE=2 SV=1

 Score =  310 bits (795), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 161/165 (97%), Positives = 162/165 (98%)

Query: 1   MSSAFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV 60
           M S FSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV
Sbjct: 1   MPSTFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV 60

Query: 61  MAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAG 120
           MAGVLGIYGLIIAVIISTGINPK KSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAG
Sbjct: 61  MAGVLGIYGLIIAVIISTGINPKTKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAG 120

Query: 121 VRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 165
           VRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRA+
Sbjct: 121 VRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAE 165

Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Nicotiana tabacum (taxid: 4097)

>sp|P23957|VATL_AVESA V-type proton ATPase 16 kDa proteolipid subunit OS=Avena sativa GN=VATP-P1 PE=2 SV=1

 Score =  310 bits (795), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 161/165 (97%), Positives = 163/165 (98%)

Query: 1   MSSAFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV 60
           MSS FSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV
Sbjct: 1   MSSVFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV 60

Query: 61  MAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAG 120
           MAGVLGIYGLIIAVIISTGINPKAK Y+LFDGYAHLSSGLACGLAGL+AGMAIGIVGDAG
Sbjct: 61  MAGVLGIYGLIIAVIISTGINPKAKPYFLFDGYAHLSSGLACGLAGLAAGMAIGIVGDAG 120

Query: 121 VRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 165
           VRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD
Sbjct: 121 VRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 165

Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Avena sativa (taxid: 4498)

>sp|P0DH94|VATL5_ARATH V-type proton ATPase 16 kDa proteolipid subunit c5 OS=Arabidopsis thaliana GN=VHA-C5 PE=2 SV=1

 Score =  310 bits (795), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 161/163 (98%), Positives = 162/163 (99%)

Query: 3   SAFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMA 62
           S FSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMA
Sbjct: 2   STFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMA 61

Query: 63  GVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVR 122
           GVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVR
Sbjct: 62  GVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVR 121

Query: 123 ANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 165
           ANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRA+
Sbjct: 122 ANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAE 164

Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	165
449469913	165	PREDICTED: V-type proton ATPase 16 kDa p	1.0	1.0	1.0	1e-84
449469915	165	PREDICTED: V-type proton ATPase 16 kDa p	1.0	1.0	0.993	2e-84
3334412	165	RecName: Full=V-type proton ATPase 16 kD	1.0	1.0	0.993	3e-84
449432418	165	PREDICTED: V-type proton ATPase 16 kDa p	1.0	1.0	0.993	4e-84
52851178	165	vacuolar H+-ATPase C subunit [Plantago m	1.0	1.0	0.987	5e-84
224085796	165	predicted protein [Populus trichocarpa]	1.0	1.0	0.987	8e-84
255545382	169	vacuolar ATP synthase proteolipid subuni	1.0	0.976	0.987	9e-84
255543885	165	vacuolar ATP synthase proteolipid subuni	1.0	1.0	0.987	1e-83
60416208	165	RecName: Full=V-type proton ATPase 16 kD	1.0	1.0	0.981	1e-83
242082934	165	hypothetical protein SORBIDRAFT_08g00438	1.0	1.0	0.987	1e-83

>gi|449469913|ref|XP_004152663.1| PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit-like [Cucumis sativus] gi|449514643|ref|XP_004164438.1| PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit-like [Cucumis sativus] gi|4519260|dbj|BAA75515.1| vacuolar H+-ATPase c subunit [Citrus unshiu] gi|6721527|dbj|BAA89594.1| vacuolar H+-ATPase c subunit [Citrus unshiu]

 Score =  317 bits (812), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 165/165 (100%), Positives = 165/165 (100%)

Query: 1   MSSAFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV 60
           MSSAFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV
Sbjct: 1   MSSAFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV 60

Query: 61  MAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAG 120
           MAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAG
Sbjct: 61  MAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAG 120

Query: 121 VRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 165
           VRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD
Sbjct: 121 VRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 165

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449469915|ref|XP_004152664.1| PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit-like [Cucumis sativus] gi|449514640|ref|XP_004164437.1| PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit-like [Cucumis sativus]

 Score =  316 bits (809), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 164/165 (99%), Positives = 165/165 (100%)

Query: 1   MSSAFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV 60
           MSS+FSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV
Sbjct: 1   MSSSFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV 60

Query: 61  MAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAG 120
           MAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAG
Sbjct: 61  MAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAG 120

Query: 121 VRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 165
           VRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD
Sbjct: 121 VRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 165

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|3334412|sp|Q96473.1|VATL_KALDA RecName: Full=V-type proton ATPase 16 kDa proteolipid subunit; Short=V-ATPase 16 kDa proteolipid subunit; AltName: Full=V-type H(+)-ATPase 16 kDa subunit; AltName: Full=Vacuolar proton pump 16 kDa proteolipid subunit gi|1622721|gb|AAC49473.1| V-type H+-ATPase 16 kDa subunit [Kalanchoe daigremontiana] gi|256568123|gb|ACU87545.1| V-H+-ATPase subunit c protein [Limonium bicolor]

 Score =  315 bits (808), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 164/165 (99%), Positives = 164/165 (99%)

Query: 1   MSSAFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV 60
           MSS FSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV
Sbjct: 1   MSSTFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV 60

Query: 61  MAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAG 120
           MAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAG
Sbjct: 61  MAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAG 120

Query: 121 VRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 165
           VRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD
Sbjct: 121 VRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 165

Source: Kalanchoe daigremontiana

Species: Kalanchoe daigremontiana

Genus: Kalanchoe

Family: Crassulaceae

Order: Saxifragales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432418|ref|XP_004133996.1| PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit-like [Cucumis sativus] gi|449525002|ref|XP_004169510.1| PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit-like [Cucumis sativus]

 Score =  315 bits (807), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 164/165 (99%), Positives = 165/165 (100%)

Query: 1   MSSAFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV 60
           MSSAFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV
Sbjct: 1   MSSAFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV 60

Query: 61  MAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAG 120
           MAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAG
Sbjct: 61  MAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAG 120

Query: 121 VRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 165
           VRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRA+
Sbjct: 121 VRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAE 165

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|52851178|emb|CAH58637.1| vacuolar H+-ATPase C subunit [Plantago major] gi|106879597|emb|CAJ38382.1| vacuolar H+-ATPase, subunit C 2 [Plantago major]

 Score =  315 bits (806), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 163/165 (98%), Positives = 164/165 (99%)

Query: 1   MSSAFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV 60
           MSS FSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV
Sbjct: 1   MSSTFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV 60

Query: 61  MAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAG 120
           MAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGL+AGMAIGIVGDAG
Sbjct: 61  MAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLAAGMAIGIVGDAG 120

Query: 121 VRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 165
           VRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD
Sbjct: 121 VRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 165

Source: Plantago major

Species: Plantago major

Genus: Plantago

Family: Plantaginaceae

Order: Lamiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224085796|ref|XP_002307699.1| predicted protein [Populus trichocarpa] gi|2493146|sp|Q43434.1|VATL_GOSHI RecName: Full=V-type proton ATPase 16 kDa proteolipid subunit; Short=V-ATPase 16 kDa proteolipid subunit; AltName: Full=Vacuolar proton pump 16 kDa proteolipid subunit gi|755148|gb|AAA82976.1| vacuolar H+-ATPase proteolipid (16 kDa) subunit [Gossypium hirsutum] gi|4519415|dbj|BAA75542.1| vacuolar H+-ATPase c subunit [Citrus unshiu] gi|6721529|dbj|BAA89595.1| vacuolar H+-ATPase c subunit [Citrus unshiu] gi|118487884|gb|ABK95764.1| unknown [Populus trichocarpa] gi|222857148|gb|EEE94695.1| predicted protein [Populus trichocarpa]

 Score =  314 bits (805), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 163/165 (98%), Positives = 164/165 (99%)

Query: 1   MSSAFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV 60
           MSS FSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV
Sbjct: 1   MSSTFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV 60

Query: 61  MAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAG 120
           MAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAG
Sbjct: 61  MAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAG 120

Query: 121 VRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 165
           VRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRA+
Sbjct: 121 VRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAE 165

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255545382|ref|XP_002513751.1| vacuolar ATP synthase proteolipid subunit 1, 2, 3, putative [Ricinus communis] gi|223546837|gb|EEF48334.1| vacuolar ATP synthase proteolipid subunit 1, 2, 3, putative [Ricinus communis]

 Score =  314 bits (804), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 163/165 (98%), Positives = 164/165 (99%)

Query: 1   MSSAFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV 60
           MSS FSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV
Sbjct: 5   MSSGFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV 64

Query: 61  MAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAG 120
           MAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAG
Sbjct: 65  MAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAG 124

Query: 121 VRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 165
           VRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRA+
Sbjct: 125 VRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAE 169

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255543885|ref|XP_002513005.1| vacuolar ATP synthase proteolipid subunit 1, 2, 3, putative [Ricinus communis] gi|255581414|ref|XP_002531515.1| vacuolar ATP synthase proteolipid subunit 1, 2, 3, putative [Ricinus communis] gi|223528868|gb|EEF30869.1| vacuolar ATP synthase proteolipid subunit 1, 2, 3, putative [Ricinus communis] gi|223548016|gb|EEF49508.1| vacuolar ATP synthase proteolipid subunit 1, 2, 3, putative [Ricinus communis]

 Score =  313 bits (803), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 163/165 (98%), Positives = 164/165 (99%)

Query: 1   MSSAFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV 60
           MSS FSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV
Sbjct: 1   MSSGFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV 60

Query: 61  MAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAG 120
           MAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAG
Sbjct: 61  MAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAG 120

Query: 121 VRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 165
           VRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRA+
Sbjct: 121 VRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAE 165

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|60416208|sp|P68161.1|VATL_MESCR RecName: Full=V-type proton ATPase 16 kDa proteolipid subunit; Short=V-ATPase 16 kDa proteolipid subunit; AltName: Full=Vacuolar proton pump 16 kDa proteolipid subunit gi|60416209|sp|P68162.1|VATL_BETVU RecName: Full=V-type proton ATPase 16 kDa proteolipid subunit; Short=V-ATPase 16 kDa proteolipid subunit; AltName: Full=Vacuolar proton pump 16 kDa proteolipid subunit gi|1429264|emb|CAA67356.1| subunit c of V-type ATPase [Beta vulgaris subsp. vulgaris] gi|1495683|emb|CAA64455.1| V-type ATPase c subunit [Mesembryanthemum crystallinum] gi|18072738|emb|CAC79689.1| subunit c of V-type ATPase [Beta vulgaris]

 Score =  313 bits (803), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 162/165 (98%), Positives = 164/165 (99%)

Query: 1   MSSAFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV 60
           MS+ F+GDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV
Sbjct: 1   MSTVFNGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV 60

Query: 61  MAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAG 120
           MAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAG
Sbjct: 61  MAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAG 120

Query: 121 VRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 165
           VRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD
Sbjct: 121 VRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 165

Source: Beta vulgaris subsp. vulgaris

Species: Beta vulgaris

Genus: Beta

Family: Amaranthaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242082934|ref|XP_002441892.1| hypothetical protein SORBIDRAFT_08g004380 [Sorghum bicolor] gi|242084922|ref|XP_002442886.1| hypothetical protein SORBIDRAFT_08g004390 [Sorghum bicolor] gi|241942585|gb|EES15730.1| hypothetical protein SORBIDRAFT_08g004380 [Sorghum bicolor] gi|241943579|gb|EES16724.1| hypothetical protein SORBIDRAFT_08g004390 [Sorghum bicolor]

 Score =  313 bits (803), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 163/165 (98%), Positives = 164/165 (99%)

Query: 1   MSSAFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV 60
           MSSAFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV
Sbjct: 1   MSSAFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV 60

Query: 61  MAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAG 120
           MAGVLGIYGLIIAVIISTGINPKAK YYLFDGYAHLSSGLACGLAGL+AGMAIGIVGDAG
Sbjct: 61  MAGVLGIYGLIIAVIISTGINPKAKPYYLFDGYAHLSSGLACGLAGLAAGMAIGIVGDAG 120

Query: 121 VRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 165
           VRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD
Sbjct: 121 VRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 165

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	165
TAIR|locus:2035401	165	AVA-P2 [Arabidopsis thaliana (	1.0	1.0	0.727	3.7e-55
TAIR|locus:2045101	164	AT2G16510 [Arabidopsis thalian	0.987	0.993	0.730	1.6e-54
TAIR|locus:2139634	164	AVA-P1 [Arabidopsis thaliana (	0.987	0.993	0.730	1.6e-54
TAIR|locus:2120237	164	VHA-C3 "vacuolar-type H(+)-ATP	0.987	0.993	0.730	1.6e-54
UNIPROTKB|F1SUH8	155	ATP6V0C "Uncharacterized prote	0.939	1.0	0.468	5.4e-31
UNIPROTKB|F1Q1T0	155	ATP6V0C "Uncharacterized prote	0.939	1.0	0.462	6.9e-31
FB|FBgn0262736	159	Vha16-1 "Vacuolar H[+] ATPase	0.951	0.987	0.462	8.8e-31
UNIPROTKB|P23956	155	ATP6V0C "V-type proton ATPase	0.939	1.0	0.455	1.1e-30
UNIPROTKB|P27449	155	ATP6V0C "V-type proton ATPase	0.939	1.0	0.455	1.8e-30
UNIPROTKB|F1P5K5	152	ATP6V0C "Uncharacterized prote	0.787	0.855	0.511	3e-30

TAIR|locus:2035401 AVA-P2 [Arabidopsis thaliana (taxid:3702)]

 Score = 569 (205.4 bits), Expect = 3.7e-55, P = 3.7e-55
 Identities = 120/165 (72%), Positives = 122/165 (73%)

Query:     1 MSSAFSGDETAPXXXXXXXXXXXXXSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV 60
             M+S FSGDETAP             SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV
Sbjct:     1 MASTFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV 60

Query:    61 MAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAG 120
             MAGVLGIYGLIIAVIISTGINPKAKSYYLFDGY                 MAIGIVGDAG
Sbjct:    61 MAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAG 120

Query:   121 VRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSRAGQSRAD 165
             VRANAQQPKLFVGM            YGLIVGIILSSRAGQSRA+
Sbjct:   121 VRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAE 165

GO:0009507 "chloroplast" evidence=ISM

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0016887 "ATPase activity" evidence=ISS

GO:0033177 "proton-transporting two-sector ATPase complex, proton-transporting domain" evidence=IEA

GO:0033179 "proton-transporting V-type ATPase, V0 domain" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0000220 "vacuolar proton-transporting V-type ATPase, V0 domain" evidence=ISS

TAIR|locus:2045101 AT2G16510 [Arabidopsis thaliana (taxid:3702)]

 Score = 563 (203.2 bits), Expect = 1.6e-54, P = 1.6e-54
 Identities = 119/163 (73%), Positives = 120/163 (73%)

Query:     3 SAFSGDETAPXXXXXXXXXXXXXSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMA 62
             S FSGDETAP             SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMA
Sbjct:     2 STFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMA 61

Query:    63 GVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVR 122
             GVLGIYGLIIAVIISTGINPKAKSYYLFDGY                 MAIGIVGDAGVR
Sbjct:    62 GVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVR 121

Query:   123 ANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSRAGQSRAD 165
             ANAQQPKLFVGM            YGLIVGIILSSRAGQSRA+
Sbjct:   122 ANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAE 164

GO:0009507 "chloroplast" evidence=ISM

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0016887 "ATPase activity" evidence=ISS

GO:0033177 "proton-transporting two-sector ATPase complex, proton-transporting domain" evidence=IEA

GO:0033179 "proton-transporting V-type ATPase, V0 domain" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0006007 "glucose catabolic process" evidence=RCA

GO:0006816 "calcium ion transport" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

TAIR|locus:2139634 AVA-P1 [Arabidopsis thaliana (taxid:3702)]

 Score = 563 (203.2 bits), Expect = 1.6e-54, P = 1.6e-54
 Identities = 119/163 (73%), Positives = 120/163 (73%)

Query:     3 SAFSGDETAPXXXXXXXXXXXXXSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMA 62
             S FSGDETAP             SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMA
Sbjct:     2 STFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMA 61

Query:    63 GVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVR 122
             GVLGIYGLIIAVIISTGINPKAKSYYLFDGY                 MAIGIVGDAGVR
Sbjct:    62 GVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVR 121

Query:   123 ANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSRAGQSRAD 165
             ANAQQPKLFVGM            YGLIVGIILSSRAGQSRA+
Sbjct:   122 ANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAE 164

GO:0009507 "chloroplast" evidence=ISM

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0015992 "proton transport" evidence=ISS

GO:0016887 "ATPase activity" evidence=ISS

GO:0033177 "proton-transporting two-sector ATPase complex, proton-transporting domain" evidence=IEA

GO:0033179 "proton-transporting V-type ATPase, V0 domain" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=ISS

GO:0005773 "vacuole" evidence=IDA

GO:0006007 "glucose catabolic process" evidence=RCA

TAIR|locus:2120237 VHA-C3 "vacuolar-type H(+)-ATPase C3" [Arabidopsis thaliana (taxid:3702)]

 Score = 563 (203.2 bits), Expect = 1.6e-54, P = 1.6e-54
 Identities = 119/163 (73%), Positives = 120/163 (73%)

Query:     3 SAFSGDETAPXXXXXXXXXXXXXSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMA 62
             S FSGDETAP             SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMA
Sbjct:     2 STFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMA 61

Query:    63 GVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVR 122
             GVLGIYGLIIAVIISTGINPKAKSYYLFDGY                 MAIGIVGDAGVR
Sbjct:    62 GVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVR 121

Query:   123 ANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSRAGQSRAD 165
             ANAQQPKLFVGM            YGLIVGIILSSRAGQSRA+
Sbjct:   122 ANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAE 164

GO:0009507 "chloroplast" evidence=ISM

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0016887 "ATPase activity" evidence=ISS

GO:0033177 "proton-transporting two-sector ATPase complex, proton-transporting domain" evidence=IEA

GO:0033179 "proton-transporting V-type ATPase, V0 domain" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

UNIPROTKB|F1SUH8 ATP6V0C "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 341 (125.1 bits), Expect = 5.4e-31, P = 5.4e-31
 Identities = 74/158 (46%), Positives = 92/158 (58%)

Query:     1 MSSAFSGDETAPXXXXXXXXXXXXXSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV 60
             MS A SG E A              S +GAAYGTAKSG G+A+M VMRPEL+MKSI+PVV
Sbjct:     1 MSEAKSGPEYAAFFAVMGASAAMVFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVV 60

Query:    61 MAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAG 120
             MAG++ IYGL++AV+I+   N   +   L+  +                  AIGIVGDAG
Sbjct:    61 MAGIIAIYGLVVAVLIA---NSLTEGISLYKSFLQLGAGLSVGLSGLAAGFAIGIVGDAG 117

Query:   121 VRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSR 158
             VR  AQQP+LFVGM            YGLIV +ILS++
Sbjct:   118 VRGTAQQPRLFVGMILILIFAEVLGLYGLIVALILSTK 155

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0033179 "proton-transporting V-type ATPase, V0 domain" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

UNIPROTKB|F1Q1T0 ATP6V0C "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
 Identities = 73/158 (46%), Positives = 92/158 (58%)

Query:     1 MSSAFSGDETAPXXXXXXXXXXXXXSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV 60
             MS A +G E A              S +GAAYGTAKSG G+A+M VMRPEL+MKSI+PVV
Sbjct:     1 MSEAKNGPEYASFFAVMGASAAMVFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVV 60

Query:    61 MAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAG 120
             MAG++ IYGL++AV+I+  +N       L+  +                  AIGIVGDAG
Sbjct:    61 MAGIIAIYGLVVAVLIANSLNDGIS---LYRSFLQLGAGLSVGLSGLAAGFAIGIVGDAG 117

Query:   121 VRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSR 158
             VR  AQQP+LFVGM            YGLIV +ILS++
Sbjct:   118 VRGTAQQPRLFVGMILILIFAEVLGLYGLIVALILSTK 155

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0033179 "proton-transporting V-type ATPase, V0 domain" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

FB|FBgn0262736 Vha16-1 "Vacuolar H[+] ATPase 16kD subunit 1" [Drosophila melanogaster (taxid:7227)]

 Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
 Identities = 74/160 (46%), Positives = 92/160 (57%)

Query:     1 MSSAFSGDET--APXXXXXXXXXXXXXSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVP 58
             MSS  S D     P             S +GAAYGTAKSG G+A+M VMRPEL+MKSI+P
Sbjct:     1 MSSEVSSDNPIYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIP 60

Query:    59 VVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGD 118
             VVMAG++ IYGL++AV+I+  +   +K Y L+ G+                  AIGIVGD
Sbjct:    61 VVMAGIIAIYGLVVAVLIAGALEEPSK-YSLYRGFIHLGAGLAVGFSGLAAGFAIGIVGD 119

Query:   119 AGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSR 158
             AGVR  AQQP+LFVGM            YGLIV I L ++
Sbjct:   120 AGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLYTK 159

GO:0000220 "vacuolar proton-transporting V-type ATPase, V0 domain" evidence=ISS;NAS

GO:0015992 "proton transport" evidence=NAS

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=ISM;IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0033181 "plasma membrane proton-transporting V-type ATPase complex" evidence=IMP

GO:0033227 "dsRNA transport" evidence=IMP

GO:0045169 "fusome" evidence=IDA

GO:0007476 "imaginal disc-derived wing morphogenesis" evidence=IMP

UNIPROTKB|P23956 ATP6V0C "V-type proton ATPase 16 kDa proteolipid subunit" [Bos taurus (taxid:9913)]

 Score = 338 (124.0 bits), Expect = 1.1e-30, P = 1.1e-30
 Identities = 72/158 (45%), Positives = 92/158 (58%)

Query:     1 MSSAFSGDETAPXXXXXXXXXXXXXSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV 60
             MS A +G E A              S +GAAYGTAKSG G+A+M VMRPE++MKSI+PVV
Sbjct:     1 MSEAKNGPEYASFFAVMGASAAMVFSALGAAYGTAKSGTGIAAMSVMRPEMIMKSIIPVV 60

Query:    61 MAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAG 120
             MAG++ IYGL++AV+I+  +N       L+  +                  AIGIVGDAG
Sbjct:    61 MAGIIAIYGLVVAVLIANSLNDGIS---LYRSFLQLGAGLSVGLSGLAAGFAIGIVGDAG 117

Query:   121 VRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSR 158
             VR  AQQP+LFVGM            YGLIV +ILS++
Sbjct:   118 VRGTAQQPRLFVGMILILIFAEVLGLYGLIVALILSTK 155

GO:0005774 "vacuolar membrane" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0033179 "proton-transporting V-type ATPase, V0 domain" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

UNIPROTKB|P27449 ATP6V0C "V-type proton ATPase 16 kDa proteolipid subunit" [Homo sapiens (taxid:9606)]

 Score = 336 (123.3 bits), Expect = 1.8e-30, P = 1.8e-30
 Identities = 72/158 (45%), Positives = 91/158 (57%)

Query:     1 MSSAFSGDETAPXXXXXXXXXXXXXSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV 60
             MS + SG E A              S +GAAYGTAKSG G+A+M VMRPE +MKSI+PVV
Sbjct:     1 MSESKSGPEYASFFAVMGASAAMVFSALGAAYGTAKSGTGIAAMSVMRPEQIMKSIIPVV 60

Query:    61 MAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAG 120
             MAG++ IYGL++AV+I+  +N       L+  +                  AIGIVGDAG
Sbjct:    61 MAGIIAIYGLVVAVLIANSLNDDIS---LYKSFLQLGAGLSVGLSGLAAGFAIGIVGDAG 117

Query:   121 VRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSR 158
             VR  AQQP+LFVGM            YGLIV +ILS++
Sbjct:   118 VRGTAQQPRLFVGMILILIFAEVLGLYGLIVALILSTK 155

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0033179 "proton-transporting V-type ATPase, V0 domain" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0019048 "virus-host interaction" evidence=IEA

GO:0005774 "vacuolar membrane" evidence=IEA

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=TAS

GO:0031625 "ubiquitin protein ligase binding" evidence=IPI

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=TAS

GO:0015992 "proton transport" evidence=TAS

GO:0006879 "cellular iron ion homeostasis" evidence=TAS

GO:0008286 "insulin receptor signaling pathway" evidence=TAS

GO:0010008 "endosome membrane" evidence=TAS

GO:0030670 "phagocytic vesicle membrane" evidence=TAS

GO:0033572 "transferrin transport" evidence=TAS

GO:0051701 "interaction with host" evidence=TAS

GO:0055085 "transmembrane transport" evidence=TAS

GO:0090382 "phagosome maturation" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|F1P5K5 ATP6V0C "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 334 (122.6 bits), Expect = 3.0e-30, P = 3.0e-30
 Identities = 68/133 (51%), Positives = 87/133 (65%)

Query:    26 SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAK 85
             S +GAAYGTAKSG G+A+M VMRPEL+MKSI+PVVMAG++ IYGL++AV+I+  ++P   
Sbjct:    23 SALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIANALSP--- 79

Query:    86 SYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXX 145
             +  LF  +                  AIGIVGDAGVR  AQQP+LFVGM           
Sbjct:    80 TITLFKSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLG 139

Query:   146 XYGLIVGIILSSR 158
              YGLIV +ILS++
Sbjct:   140 LYGLIVALILSTK 152

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0033179 "proton-transporting V-type ATPase, V0 domain" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P23380	VATL_DROME	No assigned EC number	0.6375	0.9515	0.9874	yes	no
P0DH92	VATL1_ARATH	No assigned EC number	0.9877	0.9878	0.9939	yes	no
Q0IUB5	VATL_ORYSJ	No assigned EC number	0.9696	1.0	1.0	yes	no
Q24808	VATL_ENTDI	No assigned EC number	0.5394	0.9090	0.8522	N/A	no
Q96473	VATL_KALDA	No assigned EC number	0.9939	1.0	1.0	N/A	no
Q40585	VATL_TOBAC	No assigned EC number	0.9757	1.0	1.0	N/A	no
P54642	VATL_DICDI	No assigned EC number	0.6462	0.8848	0.7448	yes	no
Q6CT28	VATL2_KLULA	No assigned EC number	0.5679	0.9515	0.9515	yes	no
P31403	VATL_MANSE	No assigned EC number	0.6530	0.8909	0.9423	N/A	no
P23957	VATL_AVESA	No assigned EC number	0.9757	1.0	1.0	N/A	no
P34546	VATL2_CAEEL	No assigned EC number	0.6394	0.8909	0.9130	yes	no
Q00607	VATL_CANTR	No assigned EC number	0.6118	0.9030	0.9312	N/A	no
A2ZBW5	VATL_ORYSI	No assigned EC number	0.9696	1.0	1.0	N/A	no
P0DH93	VATL3_ARATH	No assigned EC number	0.9877	0.9878	0.9939	yes	no
Q43362	VATL_PLECA	No assigned EC number	0.7385	0.9090	0.9146	N/A	no
P0DH94	VATL5_ARATH	No assigned EC number	0.9877	0.9878	0.9939	yes	no
Q03105	VATL_TORMA	No assigned EC number	0.6466	0.8909	0.9545	N/A	no
P59228	VATL2_ARATH	No assigned EC number	0.9818	1.0	1.0	yes	no
P59229	VATL4_ARATH	No assigned EC number	0.9878	0.9939	0.9879	yes	no
Q41773	VATL_MAIZE	No assigned EC number	0.9816	0.6606	1.0	N/A	no
Q24810	VATL_ENTHI	No assigned EC number	0.5496	0.9030	0.8418	N/A	no
O24011	VATL_SOLLC	No assigned EC number	0.9754	0.9878	0.9939	N/A	no
P50515	VATL_SCHPO	No assigned EC number	0.5921	0.9030	0.9254	yes	no
O18882	VATL_SHEEP	No assigned EC number	0.6329	0.9393	1.0	N/A	no
Q612A5	VATL2_CAEBR	No assigned EC number	0.6394	0.8909	0.9130	N/A	no
P55277	VATL_HELVI	No assigned EC number	0.6530	0.8909	0.9423	N/A	no
P31413	VATL_NEUCR	No assigned EC number	0.6442	0.8909	0.9130	N/A	no
P23956	VATL_BOVIN	No assigned EC number	0.6265	0.9393	1.0	yes	no
Q26250	VATL_NEPNO	No assigned EC number	0.6418	0.8909	0.9245	N/A	no
Q9Y874	VATL2_NEUCR	No assigned EC number	0.5093	0.9636	0.9520	N/A	no
O22552	VATL_VIGRR	No assigned EC number	0.9877	0.9878	0.9939	N/A	no
P68162	VATL_BETVU	No assigned EC number	0.9818	1.0	1.0	N/A	no
P68161	VATL_MESCR	No assigned EC number	0.9818	1.0	1.0	N/A	no
Q43434	VATL_GOSHI	No assigned EC number	0.9878	1.0	1.0	N/A	no
Q17046	VATL_ASCSU	No assigned EC number	0.6394	0.8909	0.9130	N/A	no
P63081	VATL_RAT	No assigned EC number	0.6139	0.9393	1.0	yes	no
P63082	VATL_MOUSE	No assigned EC number	0.6139	0.9393	1.0	yes	no
P32842	VATL2_YEAST	No assigned EC number	0.5894	0.9090	0.9146	yes	no
P27449	VATL_HUMAN	No assigned EC number	0.6265	0.9393	1.0	yes	no
O16110	VATL_AEDAE	No assigned EC number	0.6666	0.8848	0.9299	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_Genewise1_v1.C_LG_V1620	SubName- Full=Putative uncharacterized protein; (165 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	grail3.0017003702	SubName- Full=Putative uncharacterized protein; (260 aa)	•		•	•		•	•		0.697
	estExt_fgenesh4_pm.C_LG_IV0548	SubName- Full=Putative uncharacterized protein; (488 aa)	•		•			•			0.535
	estExt_fgenesh4_pg.C_LG_IX0294	SubName- Full=Putative uncharacterized protein; (489 aa)	•		•			•			0.535
	estExt_Genewise1_v1.C_LG_VIII0332	hypothetical protein (623 aa)	•		•		•	•			0.449
	estExt_Genewise1_v1.C_LG_X3071	SubName- Full=Putative uncharacterized protein; (624 aa)	•		•		•	•			0.447
	estExt_fgenesh4_pg.C_LG_V1320	SubName- Full=Putative uncharacterized protein; (131 aa)				•		•	•		0.413

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	165
TIGR01100	108	TIGR01100, V_ATP_synt_C, vacuolar ATP synthase 16	2e-46
PRK06558	159	PRK06558, PRK06558, V-type ATP synthase subunit K;	3e-10
pfam00137	66	pfam00137, ATP-synt_C, ATP synthase subunit C	3e-09
COG0636	79	COG0636, AtpE, F0F1-type ATP synthase, subunit c/A	3e-07
pfam00137	66	pfam00137, ATP-synt_C, ATP synthase subunit C	4e-07
PRK06271	213	PRK06271, PRK06271, V-type ATP synthase subunit K;	2e-05
PRK14893	161	PRK14893, PRK14893, V-type ATP synthase subunit K;	5e-04
PRK06251	102	PRK06251, PRK06251, V-type ATP synthase subunit K;	0.001
PRK06649	143	PRK06649, PRK06649, V-type ATP synthase subunit K;	0.004

>gnl|CDD|130170 TIGR01100, V_ATP_synt_C, vacuolar ATP synthase 16 kDa proteolipid subunit

 Score =  146 bits (371), Expect = 2e-46
 Identities = 76/109 (69%), Positives = 95/109 (87%), Gaps = 1/109 (0%)

Query: 13  FFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLII 72
           FFG +GAAAALVFS +GAAYGTAKSGVG+A+MGVMRPEL+MKSI+PVVMAG++ IYGL++
Sbjct: 1   FFGVMGAAAALVFSALGAAYGTAKSGVGIAAMGVMRPELIMKSIIPVVMAGIIAIYGLVV 60

Query: 73  AVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGV 121
           AV+I+  + PK+  Y L+ G+ HL +GLA GL+GL+AG AIGIVGDAGV
Sbjct: 61  AVLIAGSLKPKSN-YSLYKGFIHLGAGLAVGLSGLAAGFAIGIVGDAGV 108

This model describes the vacuolar ATP synthase 16 kDa proteolipid subunit in eukaryotes and includes members from diverse groups e.g., fungi, plants, parasites etc. The principal role V-ATPases are the acidification of intracellular compartments of eukaryotic cells [Transport and binding proteins, Cations and iron carrying compounds]. Length = 108

>gnl|CDD|235830 PRK06558, PRK06558, V-type ATP synthase subunit K; Validated

 Score = 55.0 bits (133), Expect = 3e-10
 Identities = 42/143 (29%), Positives = 73/143 (51%), Gaps = 3/143 (2%)

Query: 13  FFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLII 72
           FF  LGAA A+  S +G+A G  K+G   A +    PE   K+++  ++ G  G+YG +I
Sbjct: 15  FFAALGAALAVGLSGIGSAKGVGKAGEAAAGLLTEEPEKFGKALILQLLPGTQGLYGFVI 74

Query: 73  AVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFV 132
             +I   I P+        G A+ ++ L   + GL + ++ G V  AG++  A++P+ F 
Sbjct: 75  GFLIWQKITPELSLA---QGLAYFAACLPIAIVGLFSAISQGKVAAAGIQILAKRPEEFT 131

Query: 133 GMILILIFAEALALYGLIVGIIL 155
             I++    E  A+   +V  +L
Sbjct: 132 KGIILAAMVETYAILAFVVSFLL 154

Length = 159

>gnl|CDD|215743 pfam00137, ATP-synt_C, ATP synthase subunit C

 Score = 50.1 bits (121), Expect = 3e-09
 Identities = 31/66 (46%), Positives = 43/66 (65%)

Query: 93  YAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVG 152
            A L +GLA GLA L AG+ IGI G A + A A+ P+LF  M++    AEALA+YGL++ 
Sbjct: 1   LAALGAGLAIGLAALGAGIGIGIAGAAAIEAIARNPELFGKMLIGAALAEALAIYGLVIA 60

Query: 153 IILSSR 158
           ++L   
Sbjct: 61  LLLLFA 66

Length = 66

>gnl|CDD|223709 COG0636, AtpE, F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K [Energy production and conversion]

 Score = 45.3 bits (108), Expect = 3e-07
 Identities = 32/74 (43%), Positives = 43/74 (58%), Gaps = 4/74 (5%)

Query: 91  DGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQP----KLFVGMILILIFAEALAL 146
            G A + +GLA GLA L AG+  GI+G A V A A+QP    KLF  M + L   EAL +
Sbjct: 6   KGLALIGAGLAVGLAALGAGIGQGIIGAAAVEAVARQPEAAGKLFGKMFIGLALVEALGI 65

Query: 147 YGLIVGIILSSRAG 160
           YGL++ ++L     
Sbjct: 66  YGLVIALLLLFANP 79

Length = 79

>gnl|CDD|215743 pfam00137, ATP-synt_C, ATP synthase subunit C

 Score = 44.7 bits (107), Expect = 4e-07
 Identities = 20/66 (30%), Positives = 31/66 (46%)

Query: 14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIA 73
             LGA  A+  + +GA  G   +G          PEL  K ++   +A  L IYGL+IA
Sbjct: 1  LAALGAGLAIGLAALGAGIGIGIAGAAAIEAIARNPELFGKMLIGAALAEALAIYGLVIA 60

Query: 74 VIISTG 79
          +++   
Sbjct: 61 LLLLFA 66

Length = 66

>gnl|CDD|180501 PRK06271, PRK06271, V-type ATP synthase subunit K; Validated

 Score = 42.9 bits (101), Expect = 2e-05
 Identities = 43/141 (30%), Positives = 70/141 (49%), Gaps = 8/141 (5%)

Query: 15  GFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAV 74
           G +GA  A+  + +G+  G   +G   A +    P     +IV   +    G+YG ++A+
Sbjct: 1   GAIGAGLAVGIAGLGSGIGAGITGASGAGVVAEDPNKFGTAIVFQALPQTQGLYGFLVAI 60

Query: 75  IISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGM 134
           +I                +A L++GLA GLAGLSA +  GI   AG+ A A+   +F   
Sbjct: 61  LILFVFKTAP-------EWAMLAAGLAVGLAGLSA-IGQGIAASAGLGAVAEDDSIFGKA 112

Query: 135 ILILIFAEALALYGLIVGIIL 155
           ++  +  E  A+YGL+V I+L
Sbjct: 113 MVFSVLPETQAIYGLLVAILL 133

Length = 213

>gnl|CDD|184887 PRK14893, PRK14893, V-type ATP synthase subunit K; Provisional

 Score = 38.3 bits (89), Expect = 5e-04
 Identities = 36/141 (25%), Positives = 66/141 (46%), Gaps = 2/141 (1%)

Query: 17  LGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVI- 75
           +GA  A+ F+ +G+  G   +  G         ++  + I+   +     IYG +IA++ 
Sbjct: 13  IGAGVAVGFAGLGSGLGQGIAAAGSVGAVAEDSDMFARGIIFSALPETQAIYGFLIAILL 72

Query: 76  -ISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGM 134
            + +G+    +   +  G   + +G A G AGL +GM  GI   + V A  + P +F   
Sbjct: 73  LVFSGLLGGGEGLSVTAGLVAIGAGAAIGFAGLGSGMGQGIASASSVGAVVEDPDMFARG 132

Query: 135 ILILIFAEALALYGLIVGIIL 155
           I+     E  A+YG ++ I+L
Sbjct: 133 IIFSALPETQAIYGFLIAILL 153

Length = 161

>gnl|CDD|235752 PRK06251, PRK06251, V-type ATP synthase subunit K; Validated

 Score = 36.3 bits (84), Expect = 0.001
 Identities = 17/58 (29%), Positives = 37/58 (63%)

Query: 98  SGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIIL 155
           +GLA GLA + AG+A+G+   AG+    ++  +F  +++ +   E +A+YG++  +++
Sbjct: 40  AGLAVGLAAIGAGIAVGMAAAAGIGVLTERRDMFGTVLIFVAIGEGIAVYGILFAVLM 97

Length = 102

>gnl|CDD|180645 PRK06649, PRK06649, V-type ATP synthase subunit K; Validated

 Score = 35.5 bits (82), Expect = 0.004
 Identities = 38/148 (25%), Positives = 66/148 (44%), Gaps = 15/148 (10%)

Query: 14  FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLG------I 67
            G +GAAAAL  S +G+A G   +  G+A++G  +   +     P ++   +G      I
Sbjct: 3   IGLIGAAAALGISAIGSALGMGAA--GMAAIGAWKRCYMQGKPAPFLLIVFVGAPLTQTI 60

Query: 68  YGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQ 127
           YG I+       +N         + +  L +G+  GLA  ++  A G        A A+ 
Sbjct: 61  YGYIL-------MNTLLGVMSQTNPWLLLGAGIGGGLAIAASAFAQGKAAAGACDALAET 113

Query: 128 PKLFVGMILILIFAEALALYGLIVGIIL 155
            K F   +L+L   E +AL+ ++  +I 
Sbjct: 114 GKGFANYLLVLGLIETVALFVMVFLMIF 141

Length = 143

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	165
PRK06558	159	V-type ATP synthase subunit K; Validated	100.0
PRK08344	157	V-type ATP synthase subunit K; Validated	100.0
PRK09621	141	V-type ATP synthase subunit K; Provisional	100.0
PRK14893	161	V-type ATP synthase subunit K; Provisional	100.0
PRK06649	143	V-type ATP synthase subunit K; Validated	99.97
PRK06271	213	V-type ATP synthase subunit K; Validated	99.97
PRK06271	213	V-type ATP synthase subunit K; Validated	99.97
KOG0233	196	consensus Vacuolar H+-ATPase V0 sector, subunit c'	99.93
KOG0232	156	consensus Vacuolar H+-ATPase V0 sector, subunits c	99.92
TIGR01100	108	V_ATP_synt_C vacuolar ATP synthase 16 kDa proteoli	99.9
COG0636	79	AtpE F0F1-type ATP synthase, subunit c/Archaeal/va	99.71
PF00137	66	ATP-synt_C: ATP synthase subunit C; InterPro: IPR0	99.71
TIGR03322	86	alt_F1F0_F0_C alternate F1F0 ATPase, F0 subunit C.	99.68
PRK06876	78	F0F1 ATP synthase subunit C; Validated	99.68
CHL00061	81	atpH ATP synthase CF0 C subunit	99.68
PRK13468	82	F0F1 ATP synthase subunit C; Provisional	99.67
PRK07354	81	F0F1 ATP synthase subunit C; Validated	99.66
PRK06251	102	V-type ATP synthase subunit K; Validated	99.66
PRK13471	85	F0F1 ATP synthase subunit C; Provisional	99.63
PRK08482	105	F0F1 ATP synthase subunit C; Validated	99.63
PRK13469	79	F0F1 ATP synthase subunit C; Provisional	99.61
PRK07558	74	F0F1 ATP synthase subunit C; Validated	99.6
PF00137	66	ATP-synt_C: ATP synthase subunit C; InterPro: IPR0	99.6
MTH00222	77	ATP9 ATP synthase F0 subunit 9; Provisional	99.6
PRK13464	101	F0F1 ATP synthase subunit C; Provisional	99.6
PRK05880	81	F0F1 ATP synthase subunit C; Validated	99.57
PRK07159	100	F0F1 ATP synthase subunit C; Validated	99.52
PRK13466	66	F0F1 ATP synthase subunit C; Provisional	99.51
PRK14893	161	V-type ATP synthase subunit K; Provisional	99.5
PRK13467	66	F0F1 ATP synthase subunit C; Provisional	99.5
COG0636	79	AtpE F0F1-type ATP synthase, subunit c/Archaeal/va	99.5
PRK13471	85	F0F1 ATP synthase subunit C; Provisional	99.48
PRK06558	159	V-type ATP synthase subunit K; Validated	99.47
PRK06251	102	V-type ATP synthase subunit K; Validated	99.46
CHL00061	81	atpH ATP synthase CF0 C subunit	99.46
TIGR01260	58	ATP_synt_c ATP synthase, F0 subunit c. This model	99.44
PRK06876	78	F0F1 ATP synthase subunit C; Validated	99.44
PRK13469	79	F0F1 ATP synthase subunit C; Provisional	99.44
PRK07874	80	F0F1 ATP synthase subunit C; Validated	99.43
PRK07354	81	F0F1 ATP synthase subunit C; Validated	99.4
PRK08344	157	V-type ATP synthase subunit K; Validated	99.39
PRK13468	82	F0F1 ATP synthase subunit C; Provisional	99.35
PRK07558	74	F0F1 ATP synthase subunit C; Validated	99.35
TIGR03322	86	alt_F1F0_F0_C alternate F1F0 ATPase, F0 subunit C.	99.33
PRK08482	105	F0F1 ATP synthase subunit C; Validated	99.32
PRK07159	100	F0F1 ATP synthase subunit C; Validated	99.29
PRK09621	141	V-type ATP synthase subunit K; Provisional	99.29
MTH00222	77	ATP9 ATP synthase F0 subunit 9; Provisional	99.27
PRK13464	101	F0F1 ATP synthase subunit C; Provisional	99.25
TIGR01100	108	V_ATP_synt_C vacuolar ATP synthase 16 kDa proteoli	99.22
PRK13466	66	F0F1 ATP synthase subunit C; Provisional	99.19
PRK05880	81	F0F1 ATP synthase subunit C; Validated	99.19
PRK13467	66	F0F1 ATP synthase subunit C; Provisional	99.18
TIGR01260	58	ATP_synt_c ATP synthase, F0 subunit c. This model	99.13
PRK07874	80	F0F1 ATP synthase subunit C; Validated	99.12
PRK06649	143	V-type ATP synthase subunit K; Validated	99.0
KOG3025	137	consensus Mitochondrial F1F0-ATP synthase, subunit	98.48
KOG0232	156	consensus Vacuolar H+-ATPase V0 sector, subunits c	98.42
KOG0233	196	consensus Vacuolar H+-ATPase V0 sector, subunit c'	98.2
KOG3025	137	consensus Mitochondrial F1F0-ATP synthase, subunit	97.51

>PRK06558 V-type ATP synthase subunit K; Validated

Probab=100.00  E-value=8.5e-36  Score=233.35  Aligned_cols=147  Identities=29%  Similarity=0.500  Sum_probs=141.2

Q ss_pred             chhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccH
Q 031129           10 TAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYL   89 (165)
Q Consensus        10 ~~~~~~~lG~~la~gls~iGs~~G~g~ag~~~~~a~~~~P~~~~~~li~~~~~e~~~iYglvia~li~~~i~~~~~~~~~   89 (165)
                      .+++++++|++++++++++|+++|+++++.+++++.+||||.++|.+++.+++|+++|||+++++++..+++++   +++
T Consensus        12 ~~~~~~~lGa~laigla~iGsa~G~g~ag~a~~~~~a~~Pe~~~k~lI~~~l~e~~aIyGlvva~li~~~i~~~---~~~   88 (159)
T PRK06558         12 GGAFFAALGAALAVGLSGIGSAKGVGKAGEAAAGLLTEEPEKFGKALILQLLPGTQGLYGFVIGFLIWQKITPE---LSL   88 (159)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc---ccH
Confidence            56789999999999999999999999999999999999999999999999999999999999999999987542   678


Q ss_pred             HhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 031129           90 FDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRA  159 (165)
Q Consensus        90 ~~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p~l~~~~~i~~a~~E~~~I~glvia~ll~~~~  159 (165)
                      .+++.++++|+++|+++++||++||+++++++++++||||.|.|+++..+|+|+++||+|+++++++++.
T Consensus        89 ~~g~~~l~agL~vGl~~l~sgi~~G~~~a~~~~a~a~~pe~~~~~li~~~~~E~~aI~glvvaill~~~~  158 (159)
T PRK06558         89 AQGLAYFAACLPIAIVGLFSAISQGKVAAAGIQILAKRPEEFTKGIILAAMVETYAILAFVVSFLLLNGV  158 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            9999999999999999999999999999999999999999999999999999999999999999998775

>PRK08344 V-type ATP synthase subunit K; Validated

Probab=100.00  E-value=3.6e-33  Score=218.16  Aligned_cols=145  Identities=26%  Similarity=0.384  Sum_probs=133.0

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhc---C----C-CCcc
Q 031129           14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTG---I----N-PKAK   85 (165)
Q Consensus        14 ~~~lG~~la~gls~iGs~~G~g~ag~~~~~a~~~~P~~~~~~li~~~~~e~~~iYglvia~li~~~---i----~-~~~~   85 (165)
                      +.++|++++++++++|+++|+++++++++++.+||||.++|++++.++||+++|||||++|++...   .    + ++.+
T Consensus         2 ~~~lG~~la~gls~iGsa~G~g~ag~aa~g~~~~~P~~~~~~li~~a~~~t~~IYGlvi~~~i~~~~~~~~~~~~~~~~~   81 (157)
T PRK08344          2 YVALGAALAAGLAGAASSFGVGIAGSAAAGAVAEDEKNFRNALILAGLPMTQTIYGLITLFLILMYAGILGGGFKFAEPD   81 (157)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhccccccccccccc
Confidence            678999999999999999999999999999999999999999999999999999999998776432   2    1 1123


Q ss_pred             cccHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031129           86 SYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQP-KLFVGMILILIFAEALALYGLIVGIILSSR  158 (165)
Q Consensus        86 ~~~~~~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p-~l~~~~~i~~a~~E~~~I~glvia~ll~~~  158 (165)
                      ++++.+++.++++|+++|++++++|++||+++++++++++||| |+|+++++..+|+|+++||+++++++++.-
T Consensus        82 ~~~l~~g~~~i~aGL~vGla~l~sgig~G~v~a~~i~~~ar~P~~l~~~~ii~~a~~Ea~ai~~lvvallll~~  155 (157)
T PRK08344         82 TINLGKALALLGAGLLVGLAELLSAIPQGIICASGIGALPRTPGKTFTQTIILAAYAELMGIFGLVFAILGLSL  155 (157)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5678899999999999999999999999999999999999999 999999999999999999999999998754

>PRK09621 V-type ATP synthase subunit K; Provisional

Probab=100.00  E-value=5.1e-33  Score=213.81  Aligned_cols=137  Identities=21%  Similarity=0.356  Sum_probs=130.9

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccHHhHH
Q 031129           14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGY   93 (165)
Q Consensus        14 ~~~lG~~la~gls~iGs~~G~g~ag~~~~~a~~~~P~~~~~~li~~~~~e~~~iYglvia~li~~~i~~~~~~~~~~~~~   93 (165)
                      ++++|++++++++++||+||++++|++++++..|+||.++|.++..++||+|+|||||+++++..++++.     ..+++
T Consensus         4 ~~~~G~a~a~~ls~iGsa~G~~~aG~a~~G~~~e~p~~~~~~~i~~~lP~tq~IYG~ii~~li~~~~~~~-----~~~~~   78 (141)
T PRK09621          4 MSVVGPALAMGLAMIGSAIGCGMAGVASHAVMSRIDEGHGKIIGLSAMPSSQSIYGLILMLLLNDAIKDG-----KLSAL   78 (141)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhhhhHHHHHHhHHHHHHHHHHHHHHHHHHcccc-----hhHHH
Confidence            6789999999999999999999999999999999999999999999999999999999999999887642     45788


Q ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031129           94 AHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIIL  155 (165)
Q Consensus        94 ~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p~l~~~~~i~~a~~E~~~I~glvia~ll  155 (165)
                      ..+++|+.+|+++++||++||+++++++++++||||.++|+++..+++|+++||+|++++++
T Consensus        79 ~~l~aGL~vGla~l~sgigqG~v~a~~i~a~arqPe~~~k~~i~~alvE~~ai~~lv~a~ll  140 (141)
T PRK09621         79 SGIAIGISVGIALLLSAIMQGKCCASAIQAYARSSEIYGKSFAAIGIVESFALFAFVFALLL  140 (141)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999876

>PRK14893 V-type ATP synthase subunit K; Provisional

Probab=100.00  E-value=4.1e-32  Score=212.90  Aligned_cols=151  Identities=24%  Similarity=0.450  Sum_probs=139.5

Q ss_pred             chhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCcccc
Q 031129           10 TAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGIN--PKAKSY   87 (165)
Q Consensus        10 ~~~~~~~lG~~la~gls~iGs~~G~g~ag~~~~~a~~~~P~~~~~~li~~~~~e~~~iYglvia~li~~~i~--~~~~~~   87 (165)
                      ..+.+.++|++++++++++|+++|+++++.++++++.||||.+++++++.+++|+++||++++++++.++.+  +..+.+
T Consensus         6 ~~~~~~~lGagla~gla~iGa~iG~g~~~~~~~~~iar~Pe~~~~~li~~al~Ea~aIyglvia~lll~~~~~~~~~~~~   85 (161)
T PRK14893          6 LGTALAAIGAGVAVGFAGLGSGLGQGIAAAGSVGAVAEDSDMFARGIIFSALPETQAIYGFLIAILLLVFSGLLGGGEGL   85 (161)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcccc
Confidence            345688999999999999999999999999999999999999999999999999999999999999988532  112357


Q ss_pred             cHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 031129           88 YLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAG  160 (165)
Q Consensus        88 ~~~~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p~l~~~~~i~~a~~E~~~I~glvia~ll~~~~~  160 (165)
                      +..+++.++++++++|+++++|+++||+++++++++++||||.|.|+++..+++|+++||+|++++++++..+
T Consensus        86 ~~~~~~~~lgagL~~Gla~~gsgig~G~~~~a~i~~iar~Pe~~~~~li~~al~Et~~Iyglvv~~lll~~~~  158 (161)
T PRK14893         86 SVTAGLVAIGAGAAIGFAGLGSGMGQGIASASSVGAVVEDPDMFARGIIFSALPETQAIYGFLIAILLMVFGG  158 (161)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            8899999999999999999999999999999999999999999999999999999999999999999887653

>PRK06649 V-type ATP synthase subunit K; Validated

Probab=99.97  E-value=2e-30  Score=199.13  Aligned_cols=135  Identities=27%  Similarity=0.367  Sum_probs=128.9

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhcc-----chhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccc
Q 031129           14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVM-----RPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYY   88 (165)
Q Consensus        14 ~~~lG~~la~gls~iGs~~G~g~ag~~~~~a~~~-----~P~~~~~~li~~~~~e~~~iYglvia~li~~~i~~~~~~~~   88 (165)
                      ++++|++++++++++||++|++++|.++.+.+.|     |||.+. .++...+|.||+|||||+++++..       +++
T Consensus         3 ~g~lG~a~a~~la~iGSA~G~g~aG~Aa~Gv~~~~~~~~~p~~f~-~lvl~~lP~TqgiYG~vi~~~i~~-------~~s   74 (143)
T PRK06649          3 IGLIGAAAALGISAIGSALGMGAAGMAAIGAWKRCYMQGKPAPFL-LIVFVGAPLTQTIYGYILMNTLLG-------VMS   74 (143)
T ss_pred             hHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHccHhhhcCCchHHH-HHHHHhchhHHHHHHHHHHHHHHh-------hhh
Confidence            6899999999999999999999999999999998     999998 899999999999999999999986       256


Q ss_pred             HHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031129           89 LFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILS  156 (165)
Q Consensus        89 ~~~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p~l~~~~~i~~a~~E~~~I~glvia~ll~  156 (165)
                      ..+++.++++||++|++++.|++.||++++++++.++||||.|+|+++..+|+|+++||+|++++++.
T Consensus        75 ~~~g~~~l~aGL~vGl~gl~Sa~~qG~v~aagi~~~ak~p~~f~~~ii~~~~~Et~Al~~lv~s~~~~  142 (143)
T PRK06649         75 QTNPWLLLGAGIGGGLAIAASAFAQGKAAAGACDALAETGKGFANYLLVLGLIETVALFVMVFLMIFK  142 (143)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            78999999999999999999999999999999999999999999999999999999999999998864

>PRK06271 V-type ATP synthase subunit K; Validated

Probab=99.97  E-value=1.5e-29  Score=206.30  Aligned_cols=138  Identities=29%  Similarity=0.474  Sum_probs=130.5

Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhhhhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccHHhHHHH
Q 031129           16 FLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAH   95 (165)
Q Consensus        16 ~lG~~la~gls~iGs~~G~g~ag~~~~~a~~~~P~~~~~~li~~~~~e~~~iYglvia~li~~~i~~~~~~~~~~~~~~~   95 (165)
                      .+|++++++++++|+++|+++++.+++++++||||.++|++++.+++|+++||++++++++.++.++       ..+|.+
T Consensus         2 ~igagla~glaa~Ga~~G~g~~g~a~~~~~ar~Pe~~~~~li~~al~e~~~Iyglvia~ll~~~~~~-------~~g~~~   74 (213)
T PRK06271          2 AIGAGLAVGIAGLGSGIGAGITGASGAGVVAEDPNKFGTAIVFQALPQTQGLYGFLVAILILFVFKT-------APEWAM   74 (213)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-------HhHHHH
Confidence            5799999999999999999999999999999999999999999999999999999999999987532       379999


Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 031129           96 LSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQ  161 (165)
Q Consensus        96 l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p~l~~~~~i~~a~~E~~~I~glvia~ll~~~~~~  161 (165)
                      +++|+++|++++ |+++||+++++++++++||||.|.|.++..+++|+++|||++++++++.+.+.
T Consensus        75 lgagL~vGla~~-sa~g~G~~g~a~~~a~a~~p~~f~~~li~~~~~E~~aiyGlIva~ll~~~~~~  139 (213)
T PRK06271         75 LAAGLAVGLAGL-SAIGQGIAASAGLGAVAEDDSIFGKAMVFSVLPETQAIYGLLVAILLLVGVFA  139 (213)
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            999999999998 88999999999999999999999999999999999999999999999887643

>PRK06271 V-type ATP synthase subunit K; Validated

Probab=99.97  E-value=3.3e-29  Score=204.34  Aligned_cols=142  Identities=25%  Similarity=0.441  Sum_probs=133.1

Q ss_pred             hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccHHh
Q 031129           12 PFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFD   91 (165)
Q Consensus        12 ~~~~~lG~~la~gls~iGs~~G~g~ag~~~~~a~~~~P~~~~~~li~~~~~e~~~iYglvia~li~~~i~~~~~~~~~~~   91 (165)
                      +.+.++|++++++++++ +++++++++++.+++.+||||.++|+++..+|+|+++|||+|+++++..+++++    +..+
T Consensus        70 ~g~~~lgagL~vGla~~-sa~g~G~~g~a~~~a~a~~p~~f~~~li~~~~~E~~aiyGlIva~ll~~~~~~~----~~~~  144 (213)
T PRK06271         70 PEWAMLAAGLAVGLAGL-SAIGQGIAASAGLGAVAEDDSIFGKAMVFSVLPETQAIYGLLVAILLLVGVFAS----PGVE  144 (213)
T ss_pred             hHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc----chhh
Confidence            45899999999999999 789999999999999999999999999999999999999999999999876543    3457


Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 031129           92 GYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRA  159 (165)
Q Consensus        92 ~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p~l~~~~~i~~a~~E~~~I~glvia~ll~~~~  159 (165)
                      ++.++++|+++|++++ +|++||+++++++++++||||.+.|.++..+++|+++||++++++++++..
T Consensus       145 g~~~~~aGl~~Gla~~-sgig~G~~~~~~~~~~arqPe~~~~~~i~~a~~Ea~~i~~lvvalil~f~~  211 (213)
T PRK06271        145 TIAALGAGLAVGFAGL-SGIGQGITAAGAIGATARDPDAMGKGLVLAVMPETFAIFGLLIAILIMLGI  211 (213)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCcHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999 999999999999999999999999999999999999999999999988753

>KOG0233 consensus Vacuolar H+-ATPase V0 sector, subunit c'' [Energy production and conversion]

Probab=99.93  E-value=6e-27  Score=183.90  Aligned_cols=154  Identities=36%  Similarity=0.722  Sum_probs=143.7

Q ss_pred             Cchh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc---
Q 031129            9 ETAP-FFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKA---   84 (165)
Q Consensus         9 ~~~~-~~~~lG~~la~gls~iGs~~G~g~ag~~~~~a~~~~P~~~~~~li~~~~~e~~~iYglvia~li~~~i~~~~---   84 (165)
                      +.+| +|+-+|+++|++|+.+|++||+-..|++..++..|.|++.+|+++.++|||+.+||++++++++..|+++..   
T Consensus        36 ~tsp~~wa~lGI~l~ialSv~GaawGi~~tGssiiGggVkAPRI~TKnLisIIfCEavaiyglI~Aivls~kl~~~~~~~  115 (196)
T KOG0233|consen   36 RTSPYMWASLGIALCIALSVLGAAWGIYITGSSIIGGGVKAPRIKTKNLISIIFCEAVAIYGLIMAIVLSTKLENVSSSK  115 (196)
T ss_pred             cCChhHHHHhhHHHhhhhhhhhhheeEEEecceeecCcccCCcccccceEEEEeehHHHHHHHHHHHHHHhhhccCCchh
Confidence            3455 599999999999999999999999999999999999999999999999999999999999999999987532   


Q ss_pred             --ccccHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 031129           85 --KSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQS  162 (165)
Q Consensus        85 --~~~~~~~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p~l~~~~~i~~a~~E~~~I~glvia~ll~~~~~~~  162 (165)
                        +..++..++..+++|+.+|++.+.+|++.|++|+.+.-++|+||.+|.|.++.++|...+++||+++++++..|..++
T Consensus       116 ~y~~~n~~~gy~lF~aGl~vG~~nl~cglavGIigs~aalaDA~n~tLFvKilivEIfgSaiGLfGlIvgi~ms~KA~~~  195 (196)
T KOG0233|consen  116 AYGAQNLYTGYALFGAGLIVGLCNLVCGLAVGIIGSGAALADAANPTLFVKILIVEIFGSAIGLFGLIVGIVMSSKASMG  195 (196)
T ss_pred             hhccchhhhhHHHhhhhHHHHHHHHHhhhhhhhhchhhhhhcccCccceeeeehhhhHHHHHHHHHHHHHhhcccccccC
Confidence              134688999999999999999999999999999999999999999999999999999999999999999998887654

>KOG0232 consensus Vacuolar H+-ATPase V0 sector, subunits c/c' [Energy production and conversion]

Probab=99.92  E-value=8.5e-25  Score=168.75  Aligned_cols=154  Identities=70%  Similarity=1.137  Sum_probs=147.5

Q ss_pred             CCCchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccc
Q 031129            7 GDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKS   86 (165)
Q Consensus         7 ~~~~~~~~~~lG~~la~gls~iGs~~G~g~ag~~~~~a~~~~P~~~~~~li~~~~~e~~~iYglvia~li~~~i~~~~~~   86 (165)
                      .|.++||+...|++.+..++++|+++|+.+.+...+.+..++||..+|++++++++...+|||++++.++..+++++.+.
T Consensus         2 ~p~ya~ff~~~g~~~a~v~s~lgaa~Gtak~g~GI~~~~v~rpelimkSiiPvVmAgii~iYglv~av~i~g~i~~~~~~   81 (156)
T KOG0232|consen    2 SPEYAPFFGIMGAAAAMVFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIITIYGLVVAVVISGDIGPKGTA   81 (156)
T ss_pred             CcchhhHHHHhhHHHHHHHHHHHHHHhhhhcchhhhhhhhcChHHHHHHHHHHHHHhHHHHHHHHHHHhcccccCCcccc
Confidence            37799999999999999999999999999999999999999999999999999999999999999999999999887555


Q ss_pred             ccHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 031129           87 YYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAG  160 (165)
Q Consensus        87 ~~~~~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p~l~~~~~i~~a~~E~~~I~glvia~ll~~~~~  160 (165)
                      ++..+++..+++++.+|++++.+|+.+|.++.......+|||++|..+++..+|.|++++|||++++.+.++.+
T Consensus        82 ~~l~~g~i~lsagl~vgl~~~~ag~aigi~gd~gvr~~~qQPr~fv~~iLiLif~evlGLygLiva~~l~~~~~  155 (156)
T KOG0232|consen   82 YSLFTGFIVLSAGLAVGLAGLSAGLAIGIVGDAGVRGRAQQPRLFVGMILILIFAEVLGLYGLIVALALLTVGG  155 (156)
T ss_pred             cchhhHHHHHHHHHHhhhcccCCCcCcCccccccchhhhcCchhhhhHHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence            78999999999999999999999999999999999999999999999999999999999999999999987754

>TIGR01100 V_ATP_synt_C vacuolar ATP synthase 16 kDa proteolipid subunit

Probab=99.90  E-value=2e-23  Score=154.02  Aligned_cols=107  Identities=70%  Similarity=1.229  Sum_probs=98.7

Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccHHhH
Q 031129           13 FFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDG   92 (165)
Q Consensus        13 ~~~~lG~~la~gls~iGs~~G~g~ag~~~~~a~~~~P~~~~~~li~~~~~e~~~iYglvia~li~~~i~~~~~~~~~~~~   92 (165)
                      |++++|+++++.|+.+|++||+++++.+.+++..++||+++|++++++|||+|+|||||+++++..+++++. +++..++
T Consensus         1 ~~~~lG~a~a~~ls~iGsA~G~~~aG~~~a~~gv~~P~~~~k~lI~vi~~g~~gIYGlIia~ii~~~i~~~~-~~s~~~g   79 (108)
T TIGR01100         1 FFGVMGAAAALVFSALGAAYGTAKSGVGIAAMGVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAGSLKPKS-NYSLYKG   79 (108)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcc-ccCHHHH
Confidence            478999999999999999999999997778878888999999999999999999999999999999987642 4789999


Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 031129           93 YAHLSSGLACGLAGLSAGMAIGIVGDAG  120 (165)
Q Consensus        93 ~~~l~agl~~Gla~~gsgig~G~~~~~~  120 (165)
                      +.++++||++|++++.||+.||++++.+
T Consensus        80 ~~~~~aGL~vGl~~l~sgi~~Gi~G~~g  107 (108)
T TIGR01100        80 FIHLGAGLAVGLSGLAAGFAIGIVGDAG  107 (108)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccccccCC
Confidence            9999999999999999999999998653

The principal role V-ATPases are the acidification of intracellular compartments of eukaryotic cells.

>COG0636 AtpE F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K [Energy production and conversion]

Probab=99.71  E-value=8.2e-17  Score=112.89  Aligned_cols=70  Identities=44%  Similarity=0.721  Sum_probs=67.6

Q ss_pred             hHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 031129           91 DGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPK----LFVGMILILIFAEALALYGLIVGIILSSRAG  160 (165)
Q Consensus        91 ~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p~----l~~~~~i~~a~~E~~~I~glvia~ll~~~~~  160 (165)
                      +++.++++|+.+|++++++|++||+++++++++++||||    +|+++++..+++|+++||++++++++.++.+
T Consensus         6 ~~~~~i~agl~vGla~lg~gig~G~~~~~~~~~~Ar~P~~~~~l~~~~~i~~~l~E~~~i~~lvialll~f~~~   79 (79)
T COG0636           6 KGLALIGAGLAVGLAALGAGIGQGIIGAAAVEAVARQPEAAGKLFGKMFIGLALVEALGIYGLVIALLLLFANP   79 (79)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            788999999999999999999999999999999999999    9999999999999999999999999998753

>PF00137 ATP-synt_C: ATP synthase subunit C; InterPro: IPR002379 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.71  E-value=1.4e-16  Score=107.95  Aligned_cols=66  Identities=42%  Similarity=0.715  Sum_probs=64.1

Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031129           93 YAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSR  158 (165)
Q Consensus        93 ~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p~l~~~~~i~~a~~E~~~I~glvia~ll~~~  158 (165)
                      |+++++++++|++++++++++|+++++++++++||||+++|+++..+++|+++||++++++++++|
T Consensus         1 ~~~l~agl~~gl~~~gsa~g~g~~~~~~~~~~a~~p~~~~~~li~~~~~E~~~i~glv~~~~l~~~   66 (66)
T PF00137_consen    1 LAYLGAGLAVGLAAIGSAIGQGIAGSAAIGAIARQPELFTKMLIGAAFIEALGIYGLVVALLLLFK   66 (66)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhhhHHHHHHHHHHHHHHHHHHHcC
Confidence            578999999999999999999999999999999999999999999999999999999999999875

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases) and V-ATPases (or V1V0-ATPases) are each composed of two linked complexes: the F1 or V1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0 or V0 complex that forms the membrane-spanning pore. The F- and V-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. This entry represents subunit C (also called subunit 9, or proteolipid in F-ATPases, or the 16 kDa proteolipid in V-ATPases) found in the F0 or V0 complex of F- and V-ATPases, respectively. In F-ATPases, ten C subunits form an oligomeric ring that makes up the F0 rotor. The flux of protons through the ATPase channel drives the rotation of the C subunit ring, which in turn is coupled to the rotation of the F1 complex gamma subunit rotor due to the permanent binding between the gamma and epsilon subunits of F1 and the C subunit ring of F0. The sequential protonation and deprotonation of Asp61 of subunit C is coupled to the stepwise movement of the rotor []. In V-ATPases, there are three proteolipid subunits (c, c' and c'') that form part of the proton-conducting pore, each containing a buried glutamic acid residue that is essential for proton transport, and together they form a hexameric ring spanning the membrane [, ]. Structurally, the c subunits consist of a two antiparallel transmembrane helices. Both helices of one c subunit are connected by a loop on the cytoplasmic side []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 3AOU_D 2DB4_H 2BL2_C 2CYD_A 2XQT_A 2XQS_A 2XQU_E 1WU0_A 1ATY_A 1C17_A ....

>TIGR03322 alt_F1F0_F0_C alternate F1F0 ATPase, F0 subunit C

Probab=99.68  E-value=2.5e-16  Score=111.99  Aligned_cols=75  Identities=20%  Similarity=0.281  Sum_probs=69.5

Q ss_pred             ccHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 031129           87 YYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPK----LFVGMILILIFAEALALYGLIVGIILSSRAGQ  161 (165)
Q Consensus        87 ~~~~~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p~----l~~~~~i~~a~~E~~~I~glvia~ll~~~~~~  161 (165)
                      .++..++..+++|+.+|++++++|+|||+++++++|+++||||    ++++++++.+++|+++||+++++++++|..++
T Consensus         3 ~~~~~~~~~igagl~~gla~igagiG~G~~~~~a~e~iaRqPe~~~~i~~~m~ig~AlvEa~ai~alvia~lllf~~p~   81 (86)
T TIGR03322         3 LTIIAVASIVTAGLTIAIGSIGPALGEGRAVAQALTALAQQPDASNTITRTLFVGLAMIESTAIYCFVVSMILIFANPF   81 (86)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567788999999999999999999999999999999999997    58999999999999999999999999987653

A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F0 subunit C of this apparent second ATP synthase.

>PRK06876 F0F1 ATP synthase subunit C; Validated

Probab=99.68  E-value=5.4e-16  Score=108.44  Aligned_cols=71  Identities=25%  Similarity=0.451  Sum_probs=66.5

Q ss_pred             HHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 031129           89 LFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPK----LFVGMILILIFAEALALYGLIVGIILSSRA  159 (165)
Q Consensus        89 ~~~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p~----l~~~~~i~~a~~E~~~I~glvia~ll~~~~  159 (165)
                      +..+.+.+++|+++|++++++|+|+|.++++++++++||||    ++++++++.+++|+++||+++++++++|..
T Consensus         3 ~~~~~~~i~agla~glaaiGagiG~G~~~~~a~~~iaRqPe~~~~l~~~~~ig~Al~Ea~~i~~lvva~illf~~   77 (78)
T PRK06876          3 LIMGLTAIAAAIAIGLAALGAAIGIGLLGGKFLEGAARQPELIPMLQTKMFIGAGLVDAIPIIGVGIALLFLFAN   77 (78)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            44577999999999999999999999999999999999996    778999999999999999999999999875

>CHL00061 atpH ATP synthase CF0 C subunit

Probab=99.68  E-value=5.5e-16  Score=109.15  Aligned_cols=73  Identities=33%  Similarity=0.530  Sum_probs=67.5

Q ss_pred             HHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 031129           89 LFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPK----LFVGMILILIFAEALALYGLIVGIILSSRAGQ  161 (165)
Q Consensus        89 ~~~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p~----l~~~~~i~~a~~E~~~I~glvia~ll~~~~~~  161 (165)
                      ...+++.+++|+++|++++++|+++|+++++++++++||||    +++++++..+++|+++||+++++++++|..+.
T Consensus         4 ~~~~~~~i~agl~~Gla~lgagig~G~~~~~a~~aiarqPe~~~~l~~~~~i~~al~Ea~aiy~lvvalillf~~p~   80 (81)
T CHL00061          4 LISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPF   80 (81)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            34567899999999999999999999999999999999996    77889999999999999999999999998653

>PRK13468 F0F1 ATP synthase subunit C; Provisional

Probab=99.67  E-value=5.8e-16  Score=109.25  Aligned_cols=74  Identities=26%  Similarity=0.346  Sum_probs=68.6

Q ss_pred             cHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 031129           88 YLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPK----LFVGMILILIFAEALALYGLIVGIILSSRAGQ  161 (165)
Q Consensus        88 ~~~~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p~----l~~~~~i~~a~~E~~~I~glvia~ll~~~~~~  161 (165)
                      ++..+.+++++|+++|++++++|++||+++++++++++||||    ++++++++.+++|+++||+++++++++|..++
T Consensus         3 ~~~~~~~~igaglaigla~lgagig~G~~~~~a~~~iaRqPe~~g~l~~~m~ig~al~E~~ai~alviallllfa~p~   80 (82)
T PRK13468          3 TLIAVVSIIAAGLAVSIGAIGPALAEGRAVAAALDAIAQQPDAAGTISRTLFVGLAMIESMAIYCFVVAMILLFANPF   80 (82)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            467788999999999999999999999999999999999996    77789999999999999999999999998654

>PRK07354 F0F1 ATP synthase subunit C; Validated

Probab=99.66  E-value=9.2e-16  Score=108.05  Aligned_cols=73  Identities=29%  Similarity=0.487  Sum_probs=67.4

Q ss_pred             HHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 031129           89 LFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPK----LFVGMILILIFAEALALYGLIVGIILSSRAGQ  161 (165)
Q Consensus        89 ~~~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p~----l~~~~~i~~a~~E~~~I~glvia~ll~~~~~~  161 (165)
                      ...+++++++|+++|++++++|++||+++++++++++||||    +++++++..+++|+++||+++++++++|..+.
T Consensus         4 ~~~~~~~igagl~~Gla~lgagig~G~~~~~~~~~iArqPe~~~~~~~~~~i~~al~Ea~ai~~lvvallllf~~p~   80 (81)
T PRK07354          4 ITSAASVVAAALAVGLAAIGPGIGQGNAAGGAVEGIARQPEAEGKIRGTLLLSLAFMESLTIYGLVVALVLLFANPF   80 (81)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence            34667999999999999999999999999999999999997    67888999999999999999999999988653

>PRK06251 V-type ATP synthase subunit K; Validated

Probab=99.66  E-value=9.6e-16  Score=112.02  Aligned_cols=72  Identities=24%  Similarity=0.490  Sum_probs=68.0

Q ss_pred             cHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 031129           88 YLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRA  159 (165)
Q Consensus        88 ~~~~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p~l~~~~~i~~a~~E~~~I~glvia~ll~~~~  159 (165)
                      ....+.+++++|+.+|++++++|++||+++++++++++||||.+.++++..+++|+++||++++++++++..
T Consensus        30 ~~~~~~~~igaGLavGLaaigsgiG~G~~~aaai~aiAr~Pe~~g~~ii~~al~Ea~aIyglvVa~lLlf~~  101 (102)
T PRK06251         30 AQGFAGINIGAGLAVGLAAIGAGIAVGMAAAAGIGVLTERRDMFGTVLIFVAIGEGIAVYGILFAVLMLFGK  101 (102)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            466777899999999999999999999999999999999999999999999999999999999999988763

>PRK13471 F0F1 ATP synthase subunit C; Provisional

Probab=99.63  E-value=2.9e-15  Score=106.26  Aligned_cols=71  Identities=24%  Similarity=0.403  Sum_probs=66.0

Q ss_pred             cHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031129           88 YLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPK----LFVGMILILIFAEALALYGLIVGIILSSR  158 (165)
Q Consensus        88 ~~~~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p~----l~~~~~i~~a~~E~~~I~glvia~ll~~~  158 (165)
                      +.....+++++|+++|++++++|+|+|.++++++++++||||    ++++++++.+++|+++||+++++++++|.
T Consensus        10 ~~~~~~~~igagla~glaaiGagiG~G~~~~~a~~avaRqPe~~g~l~~~~~ig~aL~Ea~~iy~lvva~lllf~   84 (85)
T PRK13471         10 ALILLGKYIGAGLCMGIGAIGPGIGEGNIGAHAMDAMARQPEMVGTITTRMLLADAVAETTGIYSLLIAFLILLV   84 (85)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcChHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            356777899999999999999999999999999999999997    66699999999999999999999999875

>PRK08482 F0F1 ATP synthase subunit C; Validated

Probab=99.63  E-value=2.9e-15  Score=110.07  Aligned_cols=74  Identities=24%  Similarity=0.474  Sum_probs=69.6

Q ss_pred             cHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 031129           88 YLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPK----LFVGMILILIFAEALALYGLIVGIILSSRAGQ  161 (165)
Q Consensus        88 ~~~~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p~----l~~~~~i~~a~~E~~~I~glvia~ll~~~~~~  161 (165)
                      +...+.+++++|+++|++++++|+|+|+++++++|+++||||    ++++++++.+++|+++||+++++++++|..++
T Consensus        26 ~~i~~~~~igagla~Glaa~GagiG~G~~~~~a~e~iaRqPe~~~~i~~~~~ig~Al~Ea~~i~alvia~illf~np~  103 (105)
T PRK08482         26 DMIKSYSVLAAGIGLGIAALGGAIGMGNTAAATIAGTARNPGLGGKLMTTMFIALAMIEAQVIYALVIALIALYANPF  103 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            457788999999999999999999999999999999999996    88889999999999999999999999998765

>PRK13469 F0F1 ATP synthase subunit C; Provisional

Probab=99.61  E-value=6.5e-15  Score=103.27  Aligned_cols=69  Identities=39%  Similarity=0.644  Sum_probs=64.9

Q ss_pred             HHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031129           89 LFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPK----LFVGMILILIFAEALALYGLIVGIILSSR  158 (165)
Q Consensus        89 ~~~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p~----l~~~~~i~~a~~E~~~I~glvia~ll~~~  158 (165)
                      +..+++++++|+++ ++++++|+|+|.++++++++++||||    ++++++++.+++|+++||++++++++++.
T Consensus         6 ~~~~~~~igagla~-laalGagig~G~~~~~a~~a~arqPe~~g~l~~~~~i~~al~Eal~i~glvva~illf~   78 (79)
T PRK13469          6 FVMGMSAIGAGIAA-LAGIGAGIGIGIATGKAVEAVGRQPEASGKIMSTMLLGAALAEATAIYGLVIAIILLFV   78 (79)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHcCchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            56788999999999 99999999999999999999999996    78888999999999999999999999875

>PRK07558 F0F1 ATP synthase subunit C; Validated

Probab=99.60  E-value=7.1e-15  Score=101.85  Aligned_cols=67  Identities=19%  Similarity=0.416  Sum_probs=63.5

Q ss_pred             hHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031129           91 DGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPK----LFVGMILILIFAEALALYGLIVGIILSSR  158 (165)
Q Consensus        91 ~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p~----l~~~~~i~~a~~E~~~I~glvia~ll~~~  158 (165)
                      .+.+.+++|+++ ++++++|+|+|+++++++|+++||||    ++++++++.+++|+++||+++++++++|.
T Consensus         4 ~~~~~igagla~-laa~GagiG~G~~~~~a~e~iaRqPe~~~~l~~~~~ig~Al~Ea~~i~alvva~lllfa   74 (74)
T PRK07558          4 EALKFIGAGLAC-IGMAGAALGVGNIFGNYLSGALRNPSAADSQFGYLLIGAALAEALGIFSFLIALLLLFA   74 (74)
T ss_pred             hHHHHHHHHHHH-HHhhhHHHHHHHHHHHHHHHHHcCchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            467899999998 99999999999999999999999997    99999999999999999999999998874

>PF00137 ATP-synt_C: ATP synthase subunit C; InterPro: IPR002379 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.60  E-value=6.3e-15  Score=99.75  Aligned_cols=66  Identities=29%  Similarity=0.544  Sum_probs=63.6

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031129           14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTG   79 (165)
Q Consensus        14 ~~~lG~~la~gls~iGs~~G~g~ag~~~~~a~~~~P~~~~~~li~~~~~e~~~iYglvia~li~~~   79 (165)
                      +.++|++++++++++|+++|+++++.+.+++.+||||.++|++++.+++|+++||+++++++++++
T Consensus         1 ~~~l~agl~~gl~~~gsa~g~g~~~~~~~~~~a~~p~~~~~~li~~~~~E~~~i~glv~~~~l~~~   66 (66)
T PF00137_consen    1 LAYLGAGLAVGLAAIGSAIGQGIAGSAAIGAIARQPELFTKMLIGAAFIEALGIYGLVVALLLLFK   66 (66)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhhhHHHHHHHHHHHHHHHHHHHcC
Confidence            578999999999999999999999999999999999999999999999999999999999999764

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases) and V-ATPases (or V1V0-ATPases) are each composed of two linked complexes: the F1 or V1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0 or V0 complex that forms the membrane-spanning pore. The F- and V-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. This entry represents subunit C (also called subunit 9, or proteolipid in F-ATPases, or the 16 kDa proteolipid in V-ATPases) found in the F0 or V0 complex of F- and V-ATPases, respectively. In F-ATPases, ten C subunits form an oligomeric ring that makes up the F0 rotor. The flux of protons through the ATPase channel drives the rotation of the C subunit ring, which in turn is coupled to the rotation of the F1 complex gamma subunit rotor due to the permanent binding between the gamma and epsilon subunits of F1 and the C subunit ring of F0. The sequential protonation and deprotonation of Asp61 of subunit C is coupled to the stepwise movement of the rotor []. In V-ATPases, there are three proteolipid subunits (c, c' and c'') that form part of the proton-conducting pore, each containing a buried glutamic acid residue that is essential for proton transport, and together they form a hexameric ring spanning the membrane [, ]. Structurally, the c subunits consist of a two antiparallel transmembrane helices. Both helices of one c subunit are connected by a loop on the cytoplasmic side []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 3AOU_D 2DB4_H 2BL2_C 2CYD_A 2XQT_A 2XQS_A 2XQU_E 1WU0_A 1ATY_A 1C17_A ....

>MTH00222 ATP9 ATP synthase F0 subunit 9; Provisional

Probab=99.60  E-value=9.2e-15  Score=101.97  Aligned_cols=69  Identities=23%  Similarity=0.381  Sum_probs=65.2

Q ss_pred             HHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031129           89 LFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPK----LFVGMILILIFAEALALYGLIVGIILSSR  158 (165)
Q Consensus        89 ~~~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p~----l~~~~~i~~a~~E~~~I~glvia~ll~~~  158 (165)
                      ...+.+.+++|+.+ ++++++|+|+|+++++.+|+++||||    ++++++++.+++|+++||+++++++++|.
T Consensus         4 ~~~~~~~igaGla~-iaa~GagiG~G~~~~~~~e~vaRqPe~~~~l~~~~~ig~Al~Ea~~i~~lvia~lllfa   76 (77)
T MTH00222          4 ILTAAKFVGAGAAT-IGAAGSGAGIGTVFGNLIIGYARNPSLKQQLFTYAILGFAISEAMGLFCLMMAFLILFA   76 (77)
T ss_pred             HHHHHHHHHHHHHH-HHhhhhHHHHHHHHHHHHHHHHcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            55678999999998 99999999999999999999999995    99999999999999999999999999886

>PRK13464 F0F1 ATP synthase subunit C; Provisional

Probab=99.60  E-value=7.7e-15  Score=106.83  Aligned_cols=73  Identities=21%  Similarity=0.437  Sum_probs=68.3

Q ss_pred             HhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 031129           90 FDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPK----LFVGMILILIFAEALALYGLIVGIILSSRAGQS  162 (165)
Q Consensus        90 ~~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p~----l~~~~~i~~a~~E~~~I~glvia~ll~~~~~~~  162 (165)
                      ..+...+++++.+|++++++|+|+|+++++++|+++||||    ++++++++.+++|+++||+++++++++|+.++.
T Consensus        11 l~~~~~i~agl~iglaaiGagiGiG~v~~~ale~iARQPEa~~~l~t~m~IG~AliEa~ai~alvia~lllFa~P~~   87 (101)
T PRK13464         11 LNGLTAVAVALLISLPALGTAIGFGVLGGKYLEGVARQPELGGMLLGRMFIVAAFVDAFAAISIAIGFLVLYANPLA   87 (101)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            3567899999999999999999999999999999999995    999999999999999999999999999987654

>PRK05880 F0F1 ATP synthase subunit C; Validated

Probab=99.57  E-value=3.2e-14  Score=100.10  Aligned_cols=72  Identities=22%  Similarity=0.311  Sum_probs=66.9

Q ss_pred             HHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 031129           89 LFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPK----LFVGMILILIFAEALALYGLIVGIILSSRAG  160 (165)
Q Consensus        89 ~~~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p~----l~~~~~i~~a~~E~~~I~glvia~ll~~~~~  160 (165)
                      .....+++++|+++|++++++|+|+|+++++++|+++||||    ++++++++.+++|++.+|.+++.+++.+..+
T Consensus         4 ~~~~~~~igagla~glaaiGagiG~G~v~~~a~eaiaRqPEa~~~l~~~m~iG~Al~Ea~~~~~i~~~lif~f~~p   79 (81)
T PRK05880          4 TIAAGALIGGGLIMAGGAIGAGIGDGVAGNALISGVARQPEAQGRLFTPFFITVGLVEAAYFINLAFMALFVFATP   79 (81)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            45667999999999999999999999999999999999996    9999999999999999999999999888765

>PRK07159 F0F1 ATP synthase subunit C; Validated

Probab=99.52  E-value=7.9e-14  Score=101.53  Aligned_cols=67  Identities=25%  Similarity=0.349  Sum_probs=62.5

Q ss_pred             hHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031129           91 DGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPK----LFVGMILILIFAEALALYGLIVGIILSSR  158 (165)
Q Consensus        91 ~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p~----l~~~~~i~~a~~E~~~I~glvia~ll~~~  158 (165)
                      ..++.+++|+++ ++++++|+|+|.++++++++++||||    ++++++++.+++|+++||++++++++++.
T Consensus        29 ~~~~~igaGLa~-laaiGagiG~G~~~~~a~eaiARqPea~~~l~~~~~ig~Al~EalaI~~lvia~lllf~   99 (100)
T PRK07159         29 LKAAYIGAGLAM-IGVIGVGLGQGYAFGKAVEAIARNPEAQKQVFKLLFIGSAISETSSIYALLVAFILIFV   99 (100)
T ss_pred             hhHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHhChHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            336899999999 99999999999999999999999996    78889999999999999999999999875

>PRK13466 F0F1 ATP synthase subunit C; Provisional

Probab=99.51  E-value=1e-13  Score=94.05  Aligned_cols=57  Identities=30%  Similarity=0.461  Sum_probs=54.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhCch----hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031129           99 GLACGLAGLSAGMAIGIVGDAGVRANAQQPK----LFVGMILILIFAEALALYGLIVGIIL  155 (165)
Q Consensus        99 gl~~Gla~~gsgig~G~~~~~~~~~~ar~p~----l~~~~~i~~a~~E~~~I~glvia~ll  155 (165)
                      ++++|++++++|+|+|.++++++|+++||||    ++++++++.+++|+++||++++++++
T Consensus         5 ~l~~glaa~GagiG~G~~~~~~~e~vaRqPea~~~l~~~~~ig~al~Ea~~i~alvia~l~   65 (66)
T PRK13466          5 ALALGLACLGVSIGEGLLVASYLSSTARQPEMQSKLMAGVFLGVAFIEGTFFVTLAMTFVL   65 (66)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5778899999999999999999999999995    99999999999999999999999875

>PRK14893 V-type ATP synthase subunit K; Provisional

Probab=99.50  E-value=1.7e-13  Score=107.71  Aligned_cols=75  Identities=31%  Similarity=0.527  Sum_probs=70.4

Q ss_pred             ccHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 031129           87 YYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQ  161 (165)
Q Consensus        87 ~~~~~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p~l~~~~~i~~a~~E~~~I~glvia~ll~~~~~~  161 (165)
                      .+...+++.+++++++|++++++++|+|+++++++++++||||.++++++..+++|+++||+++++++++++.+.
T Consensus         4 ~~~~~~~~~lGagla~gla~iGa~iG~g~~~~~~~~~iar~Pe~~~~~li~~al~Ea~aIyglvia~lll~~~~~   78 (161)
T PRK14893          4 IALGTALAAIGAGVAVGFAGLGSGLGQGIAAAGSVGAVAEDSDMFARGIIFSALPETQAIYGFLIAILLLVFSGL   78 (161)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            345678999999999999999999999999999999999999999999999999999999999999999997654

>PRK13467 F0F1 ATP synthase subunit C; Provisional

Probab=99.50  E-value=1.2e-13  Score=93.61  Aligned_cols=56  Identities=30%  Similarity=0.375  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhCch----hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031129          100 LACGLAGLSAGMAIGIVGDAGVRANAQQPK----LFVGMILILIFAEALALYGLIVGIIL  155 (165)
Q Consensus       100 l~~Gla~~gsgig~G~~~~~~~~~~ar~p~----l~~~~~i~~a~~E~~~I~glvia~ll  155 (165)
                      +.+|++++++|+|+|.++++++|+++||||    ++++++++.+++|+++||++++++++
T Consensus         6 i~~GlaaiGagiG~G~v~~~a~e~iaRqPE~~~~i~~~m~ig~Al~Ea~~i~~lvia~il   65 (66)
T PRK13467          6 LALALACMGVSLGEGFLMANLFKSAARQPEMIGQLRSLMILGVAFIEGTFFVTLVMSFIL   65 (66)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            456788889999999999999999999995    99999999999999999999999875

>COG0636 AtpE F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K [Energy production and conversion]

Probab=99.50  E-value=1.6e-13  Score=96.20  Aligned_cols=68  Identities=28%  Similarity=0.475  Sum_probs=64.8

Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhccchh----hhhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 031129           13 FFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPE----LVMKSIVPVVMAGVLGIYGLIIAVIISTGI   80 (165)
Q Consensus        13 ~~~~lG~~la~gls~iGs~~G~g~ag~~~~~a~~~~P~----~~~~~li~~~~~e~~~iYglvia~li~~~i   80 (165)
                      -+.+++++++++++++|+++|+++++.+..++.+||||    .++++++..+|+|++++|++++++++.++.
T Consensus         7 ~~~~i~agl~vGla~lg~gig~G~~~~~~~~~~Ar~P~~~~~l~~~~~i~~~l~E~~~i~~lvialll~f~~   78 (79)
T COG0636           7 GLALIGAGLAVGLAALGAGIGQGIIGAAAVEAVARQPEAAGKLFGKMFIGLALVEALGIYGLVIALLLLFAN   78 (79)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            36789999999999999999999999999999999999    999999999999999999999999998763

>PRK13471 F0F1 ATP synthase subunit C; Provisional

Probab=99.48  E-value=2.7e-13  Score=96.21  Aligned_cols=66  Identities=24%  Similarity=0.402  Sum_probs=61.9

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhccchhhhh----hHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031129           14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVM----KSIVPVVMAGVLGIYGLIIAVIISTG   79 (165)
Q Consensus        14 ~~~lG~~la~gls~iGs~~G~g~ag~~~~~a~~~~P~~~~----~~li~~~~~e~~~iYglvia~li~~~   79 (165)
                      ..++|++++++++++|+++|++.++.+++++++||||.++    ++++..+++|+++||++++++++.+.
T Consensus        15 ~~~igagla~glaaiGagiG~G~~~~~a~~avaRqPe~~g~l~~~~~ig~aL~Ea~~iy~lvva~lllf~   84 (85)
T PRK13471         15 GKYIGAGLCMGIGAIGPGIGEGNIGAHAMDAMARQPEMVGTITTRMLLADAVAETTGIYSLLIAFLILLV   84 (85)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcChHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            6789999999999999999999999999999999999866    68999999999999999999998764

>PRK06558 V-type ATP synthase subunit K; Validated

Probab=99.47  E-value=3.9e-13  Score=105.52  Aligned_cols=72  Identities=22%  Similarity=0.491  Sum_probs=68.6

Q ss_pred             HhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 031129           90 FDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQ  161 (165)
Q Consensus        90 ~~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p~l~~~~~i~~a~~E~~~I~glvia~ll~~~~~~  161 (165)
                      ...+.++++++++++++++|++++|+++++++++.+||||.++|.++..+++|+++|||++++++++++.++
T Consensus        13 ~~~~~~lGa~laigla~iGsa~G~g~ag~a~~~~~a~~Pe~~~k~lI~~~l~e~~aIyGlvva~li~~~i~~   84 (159)
T PRK06558         13 GAFFAALGAALAVGLSGIGSAKGVGKAGEAAAGLLTEEPEKFGKALILQLLPGTQGLYGFVIGFLIWQKITP   84 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence            457899999999999999999999999999999999999999999999999999999999999999998754

>PRK06251 V-type ATP synthase subunit K; Validated

Probab=99.46  E-value=3.9e-13  Score=98.29  Aligned_cols=66  Identities=18%  Similarity=0.293  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031129           14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTG   79 (165)
Q Consensus        14 ~~~lG~~la~gls~iGs~~G~g~ag~~~~~a~~~~P~~~~~~li~~~~~e~~~iYglvia~li~~~   79 (165)
                      ..++|++++++++++|+++|++.++.+++++++||||.++++++..+|+|+++||+++++|++.+.
T Consensus        35 ~~~igaGLavGLaaigsgiG~G~~~aaai~aiAr~Pe~~g~~ii~~al~Ea~aIyglvVa~lLlf~  100 (102)
T PRK06251         35 GINIGAGLAVGLAAIGAGIAVGMAAAAGIGVLTERRDMFGTVLIFVAIGEGIAVYGILFAVLMLFG  100 (102)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            567999999999999999999999999999999999999999999999999999999999998764

>CHL00061 atpH ATP synthase CF0 C subunit

Probab=99.46  E-value=4.2e-13  Score=94.53  Aligned_cols=66  Identities=18%  Similarity=0.287  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhccchhhh----hhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031129           14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELV----MKSIVPVVMAGVLGIYGLIIAVIISTG   79 (165)
Q Consensus        14 ~~~lG~~la~gls~iGs~~G~g~ag~~~~~a~~~~P~~~----~~~li~~~~~e~~~iYglvia~li~~~   79 (165)
                      +..++++++++++++|+++|++.++.+++++++||||.+    +++++..+|.|+++||++++++++.+.
T Consensus         8 ~~~i~agl~~Gla~lgagig~G~~~~~a~~aiarqPe~~~~l~~~~~i~~al~Ea~aiy~lvvalillf~   77 (81)
T CHL00061          8 ASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFA   77 (81)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            578999999999999999999999999999999999965    459999999999999999999999876

>TIGR01260 ATP_synt_c ATP synthase, F0 subunit c

Probab=99.44  E-value=3.3e-13  Score=89.49  Aligned_cols=53  Identities=25%  Similarity=0.465  Sum_probs=50.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031129          106 GLSAGMAIGIVGDAGVRANAQQPK----LFVGMILILIFAEALALYGLIVGIILSSR  158 (165)
Q Consensus       106 ~~gsgig~G~~~~~~~~~~ar~p~----l~~~~~i~~a~~E~~~I~glvia~ll~~~  158 (165)
                      ++++|+|+|.++++++++++||||    ++++++++.+++|+++||+++++++++|+
T Consensus         2 a~GagiG~G~i~~~a~~~iaRqPe~~~~l~~~~~ig~al~Ea~~i~~lvia~lllfa   58 (58)
T TIGR01260         2 AIGAAIGIGILGGKFLESAARQPELKPLLRTTMFIGMGLVDAIPMIAVVIALILLFA   58 (58)
T ss_pred             cchhHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            578999999999999999999996    69999999999999999999999998874

This model describes the subunit c in F1/F0-ATP synthase, a membrane associated multisubunit complex found in bacteria and organelles of higher eukaryotes, namely, mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. The functional role of subunit c, which is the part of F0 cluster, has been delineated in-vitro reconstitution experiments. Overall experimental proof exists that demonstrate the electrochemical gradient is converted into a rotational torque that leads to ATP synthesis.

>PRK06876 F0F1 ATP synthase subunit C; Validated

Probab=99.44  E-value=9.6e-13  Score=92.06  Aligned_cols=67  Identities=24%  Similarity=0.285  Sum_probs=62.6

Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhccchhhhh----hHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031129           13 FFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVM----KSIVPVVMAGVLGIYGLIIAVIISTG   79 (165)
Q Consensus        13 ~~~~lG~~la~gls~iGs~~G~g~ag~~~~~a~~~~P~~~~----~~li~~~~~e~~~iYglvia~li~~~   79 (165)
                      ...++|++++++++++|+++|++.++.+++++++||||..+    ++++..+++|+.+||+|++++++.+.
T Consensus         6 ~~~~i~agla~glaaiGagiG~G~~~~~a~~~iaRqPe~~~~l~~~~~ig~Al~Ea~~i~~lvva~illf~   76 (78)
T PRK06876          6 GLTAIAAAIAIGLAALGAAIGIGLLGGKFLEGAARQPELIPMLQTKMFIGAGLVDAIPIIGVGIALLFLFA   76 (78)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            36789999999999999999999999999999999999765    69999999999999999999999875

>PRK13469 F0F1 ATP synthase subunit C; Provisional

Probab=99.44  E-value=6.8e-13  Score=93.05  Aligned_cols=68  Identities=25%  Similarity=0.289  Sum_probs=61.2

Q ss_pred             hhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhccchhhhhh----HHHHHHHHHHHHHHHHHHHHHHHhc
Q 031129           11 APFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMK----SIVPVVMAGVLGIYGLIIAVIISTG   79 (165)
Q Consensus        11 ~~~~~~lG~~la~gls~iGs~~G~g~ag~~~~~a~~~~P~~~~~----~li~~~~~e~~~iYglvia~li~~~   79 (165)
                      ...+.++|+++++ ++++|+++|++.++++++++++||||.++|    +++..+|+|+++||++++++++.+.
T Consensus         7 ~~~~~~igagla~-laalGagig~G~~~~~a~~a~arqPe~~g~l~~~~~i~~al~Eal~i~glvva~illf~   78 (79)
T PRK13469          7 VMGMSAIGAGIAA-LAGIGAGIGIGIATGKAVEAVGRQPEASGKIMSTMLLGAALAEATAIYGLVIAIILLFV   78 (79)
T ss_pred             HHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHcCchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3347899999999 999999999999999999999999996554    6889999999999999999998764

>PRK07874 F0F1 ATP synthase subunit C; Validated

Probab=99.43  E-value=8.4e-13  Score=92.64  Aligned_cols=63  Identities=38%  Similarity=0.637  Sum_probs=55.2

Q ss_pred             cHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCch----hHHHHHHHHHHHHHHHHHHHHHHHH
Q 031129           88 YLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPK----LFVGMILILIFAEALALYGLIVGII  154 (165)
Q Consensus        88 ~~~~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p~----l~~~~~i~~a~~E~~~I~glvia~l  154 (165)
                      +...+.+.++.    |++++++|+|+|.++++++|+++||||    ++++++++.+++|+.+||+++++|+
T Consensus        13 ~~~~~~~~ig~----GlaaiGagiG~G~~~~~a~e~iARqPEa~~~l~~~m~lG~Al~Ea~~i~~lvia~l   79 (80)
T PRK07874         13 TTFTGLGAVGY----GLAAIGPGIGVGIVVGKALEGMARQPEMAGQLRTTMFLGIAFVEALALIGLVAGFL   79 (80)
T ss_pred             HHHhhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHcCHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45566665544    566689999999999999999999995    9999999999999999999999986

>PRK07354 F0F1 ATP synthase subunit C; Validated

Probab=99.40  E-value=2.1e-12  Score=91.00  Aligned_cols=66  Identities=21%  Similarity=0.351  Sum_probs=61.8

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhccchhhh----hhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031129           14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELV----MKSIVPVVMAGVLGIYGLIIAVIISTG   79 (165)
Q Consensus        14 ~~~lG~~la~gls~iGs~~G~g~ag~~~~~a~~~~P~~~----~~~li~~~~~e~~~iYglvia~li~~~   79 (165)
                      +.++|++++++++++|+++|+++++.+++++++||||.+    +++++..+|+|+.++|++++++++.+.
T Consensus         8 ~~~igagl~~Gla~lgagig~G~~~~~~~~~iArqPe~~~~~~~~~~i~~al~Ea~ai~~lvvallllf~   77 (81)
T PRK07354          8 ASVVAAALAVGLAAIGPGIGQGNAAGGAVEGIARQPEAEGKIRGTLLLSLAFMESLTIYGLVVALVLLFA   77 (81)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            578999999999999999999999999999999999974    457999999999999999999998876

>PRK08344 V-type ATP synthase subunit K; Validated

Probab=99.39  E-value=2e-12  Score=101.33  Aligned_cols=66  Identities=30%  Similarity=0.507  Sum_probs=62.5

Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031129           93 YAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSR  158 (165)
Q Consensus        93 ~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p~l~~~~~i~~a~~E~~~I~glvia~ll~~~  158 (165)
                      |..+++++++|+++++|+||+++++++++++.+||||+++|.++..+++|+++|||||++++++.+
T Consensus         2 ~~~lG~~la~gls~iGsa~G~g~ag~aa~g~~~~~P~~~~~~li~~a~~~t~~IYGlvi~~~i~~~   67 (157)
T PRK08344          2 YVALGAALAAGLAGAASSFGVGIAGSAAAGAVAEDEKNFRNALILAGLPMTQTIYGLITLFLILMY   67 (157)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            678999999999999999999999999999999999999999999999999999999998776544

>PRK13468 F0F1 ATP synthase subunit C; Provisional

Probab=99.35  E-value=6.3e-12  Score=88.73  Aligned_cols=68  Identities=16%  Similarity=0.291  Sum_probs=62.0

Q ss_pred             hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhccchhhhh----hHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031129           12 PFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVM----KSIVPVVMAGVLGIYGLIIAVIISTG   79 (165)
Q Consensus        12 ~~~~~lG~~la~gls~iGs~~G~g~ag~~~~~a~~~~P~~~~----~~li~~~~~e~~~iYglvia~li~~~   79 (165)
                      ....++|++++++++++|+++|+++++.+++++++||||.++    ++++..+++|+.+||++++++++.+.
T Consensus         6 ~~~~~igaglaigla~lgagig~G~~~~~a~~~iaRqPe~~g~l~~~m~ig~al~E~~ai~alviallllfa   77 (82)
T PRK13468          6 AVVSIIAAGLAVSIGAIGPALAEGRAVAAALDAIAQQPDAAGTISRTLFVGLAMIESMAIYCFVVAMILLFA   77 (82)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            346789999999999999999999999999999999999755    47788999999999999999998876

>PRK07558 F0F1 ATP synthase subunit C; Validated

Probab=99.35  E-value=6.3e-12  Score=87.12  Aligned_cols=65  Identities=25%  Similarity=0.340  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhccchh----hhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 031129           13 FFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPE----LVMKSIVPVVMAGVLGIYGLIIAVIIST   78 (165)
Q Consensus        13 ~~~~lG~~la~gls~iGs~~G~g~ag~~~~~a~~~~P~----~~~~~li~~~~~e~~~iYglvia~li~~   78 (165)
                      ....+|+++++ ++++|+++|++.+..+++++++||||    +++++++..++.|+.+||++++++++.+
T Consensus         5 ~~~~igagla~-laa~GagiG~G~~~~~a~e~iaRqPe~~~~l~~~~~ig~Al~Ea~~i~alvva~lllf   73 (74)
T PRK07558          5 ALKFIGAGLAC-IGMAGAALGVGNIFGNYLSGALRNPSAADSQFGYLLIGAALAEALGIFSFLIALLLLF   73 (74)
T ss_pred             HHHHHHHHHHH-HHhhhHHHHHHHHHHHHHHHHHcCchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            46789999999 99999999999999999999999999    6777999999999999999999999865

>TIGR03322 alt_F1F0_F0_C alternate F1F0 ATPase, F0 subunit C

Probab=99.33  E-value=1e-11  Score=88.38  Aligned_cols=67  Identities=15%  Similarity=0.275  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhccchhhh----hhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031129           13 FFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELV----MKSIVPVVMAGVLGIYGLIIAVIISTG   79 (165)
Q Consensus        13 ~~~~lG~~la~gls~iGs~~G~g~ag~~~~~a~~~~P~~~----~~~li~~~~~e~~~iYglvia~li~~~   79 (165)
                      ....+|++++++++++|+++|++++..+++++++||||..    +++++..++.|+.+||++++++++.+.
T Consensus         8 ~~~~igagl~~gla~igagiG~G~~~~~a~e~iaRqPe~~~~i~~~m~ig~AlvEa~ai~alvia~lllf~   78 (86)
T TIGR03322         8 VASIVTAGLTIAIGSIGPALGEGRAVAQALTALAQQPDASNTITRTLFVGLAMIESTAIYCFVVSMILIFA   78 (86)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3678999999999999999999999999999999999974    558888999999999999999998876

A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F0 subunit C of this apparent second ATP synthase.

>PRK08482 F0F1 ATP synthase subunit C; Validated

Probab=99.32  E-value=9.5e-12  Score=91.49  Aligned_cols=67  Identities=24%  Similarity=0.332  Sum_probs=62.8

Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhccchhhhhh----HHHHHHHHHHHHHHHHHHHHHHHhc
Q 031129           13 FFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMK----SIVPVVMAGVLGIYGLIIAVIISTG   79 (165)
Q Consensus        13 ~~~~lG~~la~gls~iGs~~G~g~ag~~~~~a~~~~P~~~~~----~li~~~~~e~~~iYglvia~li~~~   79 (165)
                      ...++|++++++++++|+++|++.++.+++++++||||..++    +++..+++|+.+||++++++++.+.
T Consensus        30 ~~~~igagla~Glaa~GagiG~G~~~~~a~e~iaRqPe~~~~i~~~~~ig~Al~Ea~~i~alvia~illf~  100 (105)
T PRK08482         30 SYSVLAAGIGLGIAALGGAIGMGNTAAATIAGTARNPGLGGKLMTTMFIALAMIEAQVIYALVIALIALYA  100 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            367899999999999999999999999999999999997655    8999999999999999999999886

>PRK07159 F0F1 ATP synthase subunit C; Validated

Probab=99.29  E-value=1.7e-11  Score=89.38  Aligned_cols=65  Identities=18%  Similarity=0.263  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhccchhhh----hhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031129           14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELV----MKSIVPVVMAGVLGIYGLIIAVIISTG   79 (165)
Q Consensus        14 ~~~lG~~la~gls~iGs~~G~g~ag~~~~~a~~~~P~~~----~~~li~~~~~e~~~iYglvia~li~~~   79 (165)
                      ..++|+++++ ++++|+++|++.++.+++++++||||..    +++++..+++|+++||++++++++.+.
T Consensus        31 ~~~igaGLa~-laaiGagiG~G~~~~~a~eaiARqPea~~~l~~~~~ig~Al~EalaI~~lvia~lllf~   99 (100)
T PRK07159         31 AAYIGAGLAM-IGVIGVGLGQGYAFGKAVEAIARNPEAQKQVFKLLFIGSAISETSSIYALLVAFILIFV   99 (100)
T ss_pred             HHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHhChHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            5789999999 9999999999999999999999999974    458899999999999999999998753

>PRK09621 V-type ATP synthase subunit K; Provisional

Probab=99.29  E-value=2.1e-11  Score=94.00  Aligned_cols=71  Identities=20%  Similarity=0.307  Sum_probs=66.4

Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 031129           92 GYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQS  162 (165)
Q Consensus        92 ~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p~l~~~~~i~~a~~E~~~I~glvia~ll~~~~~~~  162 (165)
                      .+.++++++++++++++|+||++.+++++.....|+||.|.|.++..++||+++||||++++++..+.+.+
T Consensus         3 ~~~~~G~a~a~~ls~iGsa~G~~~aG~a~~G~~~e~p~~~~~~~i~~~lP~tq~IYG~ii~~li~~~~~~~   73 (141)
T PRK09621          3 DMSVVGPALAMGLAMIGSAIGCGMAGVASHAVMSRIDEGHGKIIGLSAMPSSQSIYGLILMLLLNDAIKDG   73 (141)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhhhhHHHHHHhHHHHHHHHHHHHHHHHHHcccc
Confidence            35678999999999999999999999999999999999999999999999999999999999999877543

>MTH00222 ATP9 ATP synthase F0 subunit 9; Provisional

Probab=99.27  E-value=3.1e-11  Score=84.23  Aligned_cols=66  Identities=21%  Similarity=0.297  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhccchhh----hhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031129           13 FFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPEL----VMKSIVPVVMAGVLGIYGLIIAVIISTG   79 (165)
Q Consensus        13 ~~~~lG~~la~gls~iGs~~G~g~ag~~~~~a~~~~P~~----~~~~li~~~~~e~~~iYglvia~li~~~   79 (165)
                      ...++|+++++ ++++|+++|+|....+.+++++||||.    ++++++..++.|+.+||++++++++.+.
T Consensus         7 ~~~~igaGla~-iaa~GagiG~G~~~~~~~e~vaRqPe~~~~l~~~~~ig~Al~Ea~~i~~lvia~lllfa   76 (77)
T MTH00222          7 AAKFVGAGAAT-IGAAGSGAGIGTVFGNLIIGYARNPSLKQQLFTYAILGFAISEAMGLFCLMMAFLILFA   76 (77)
T ss_pred             HHHHHHHHHHH-HHhhhhHHHHHHHHHHHHHHHHcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            36789999999 999999999999999999999999996    4558999999999999999999998764

>PRK13464 F0F1 ATP synthase subunit C; Provisional

Probab=99.25  E-value=4e-11  Score=87.41  Aligned_cols=67  Identities=13%  Similarity=0.193  Sum_probs=62.4

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhccchhh----hhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 031129           14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPEL----VMKSIVPVVMAGVLGIYGLIIAVIISTGI   80 (165)
Q Consensus        14 ~~~lG~~la~gls~iGs~~G~g~ag~~~~~a~~~~P~~----~~~~li~~~~~e~~~iYglvia~li~~~i   80 (165)
                      ...++++++++++++|+++|++.+..+.+++++||||.    ++++++..++.|+.+||++++++++.+..
T Consensus        14 ~~~i~agl~iglaaiGagiGiG~v~~~ale~iARQPEa~~~l~t~m~IG~AliEa~ai~alvia~lllFa~   84 (101)
T PRK13464         14 LTAVAVALLISLPALGTAIGFGVLGGKYLEGVARQPELGGMLLGRMFIVAAFVDAFAAISIAIGFLVLYAN   84 (101)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            57799999999999999999999999999999999996    55699999999999999999999998873

>TIGR01100 V_ATP_synt_C vacuolar ATP synthase 16 kDa proteolipid subunit

Probab=99.22  E-value=6.8e-11  Score=87.43  Aligned_cols=70  Identities=19%  Similarity=0.371  Sum_probs=63.7

Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 031129           93 YAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQS  162 (165)
Q Consensus        93 ~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p~l~~~~~i~~a~~E~~~I~glvia~ll~~~~~~~  162 (165)
                      +.+++..+++++++++|+||+++++..-...-.++||++.|.++..+|+|+++|||||+++++..|.+.+
T Consensus         2 ~~~lG~a~a~~ls~iGsA~G~~~aG~~~a~~gv~~P~~~~k~lI~vi~~g~~gIYGlIia~ii~~~i~~~   71 (108)
T TIGR01100         2 FGVMGAAAALVFSALGAAYGTAKSGVGIAAMGVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAGSLKPK   71 (108)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCc
Confidence            5688999999999999999999999766666667799999999999999999999999999999998654

The principal role V-ATPases are the acidification of intracellular compartments of eukaryotic cells.

>PRK13466 F0F1 ATP synthase subunit C; Provisional

Probab=99.19  E-value=8.8e-11  Score=79.72  Aligned_cols=57  Identities=19%  Similarity=0.264  Sum_probs=52.3

Q ss_pred             HHHHHHhhhHHHHHHHHHHHHHhhhhccchhh----hhhHHHHHHHHHHHHHHHHHHHHHH
Q 031129           20 AAALVFSCMGAAYGTAKSGVGVASMGVMRPEL----VMKSIVPVVMAGVLGIYGLIIAVII   76 (165)
Q Consensus        20 ~la~gls~iGs~~G~g~ag~~~~~a~~~~P~~----~~~~li~~~~~e~~~iYglvia~li   76 (165)
                      +++++++++|+++|++.+..+.+++++||||.    ++++++..++.|+.+||++++++++
T Consensus         5 ~l~~glaa~GagiG~G~~~~~~~e~vaRqPea~~~l~~~~~ig~al~Ea~~i~alvia~l~   65 (66)
T PRK13466          5 ALALGLACLGVSIGEGLLVASYLSSTARQPEMQSKLMAGVFLGVAFIEGTFFVTLAMTFVL   65 (66)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            46778999999999999999999999999996    4558999999999999999999985

>PRK05880 F0F1 ATP synthase subunit C; Validated

Probab=99.19  E-value=2e-10  Score=80.89  Aligned_cols=66  Identities=15%  Similarity=0.184  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhccchhh----hhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031129           14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPEL----VMKSIVPVVMAGVLGIYGLIIAVIISTG   79 (165)
Q Consensus        14 ~~~lG~~la~gls~iGs~~G~g~ag~~~~~a~~~~P~~----~~~~li~~~~~e~~~iYglvia~li~~~   79 (165)
                      ..++|++++++++++|+++|++.+..+++++++||||.    ++++++..++.|++.+|.+++.++..+.
T Consensus         8 ~~~igagla~glaaiGagiG~G~v~~~a~eaiaRqPEa~~~l~~~m~iG~Al~Ea~~~~~i~~~lif~f~   77 (81)
T PRK05880          8 GALIGGGLIMAGGAIGAGIGDGVAGNALISGVARQPEAQGRLFTPFFITVGLVEAAYFINLAFMALFVFA   77 (81)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            57899999999999999999999999999999999996    5569999999999999998888887765

>PRK13467 F0F1 ATP synthase subunit C; Provisional

Probab=99.18  E-value=1.1e-10  Score=79.15  Aligned_cols=56  Identities=21%  Similarity=0.303  Sum_probs=50.2

Q ss_pred             HHHHHhhhHHHHHHHHHHHHHhhhhccchhh----hhhHHHHHHHHHHHHHHHHHHHHHH
Q 031129           21 AALVFSCMGAAYGTAKSGVGVASMGVMRPEL----VMKSIVPVVMAGVLGIYGLIIAVII   76 (165)
Q Consensus        21 la~gls~iGs~~G~g~ag~~~~~a~~~~P~~----~~~~li~~~~~e~~~iYglvia~li   76 (165)
                      ++.+++++|+++|++.+..+++++++||||.    ++++++..++.|+.+||++++++++
T Consensus         6 i~~GlaaiGagiG~G~v~~~a~e~iaRqPE~~~~i~~~m~ig~Al~Ea~~i~~lvia~il   65 (66)
T PRK13467          6 LALALACMGVSLGEGFLMANLFKSAARQPEMIGQLRSLMILGVAFIEGTFFVTLVMSFIL   65 (66)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3456677899999999999999999999996    4558999999999999999999986

>TIGR01260 ATP_synt_c ATP synthase, F0 subunit c

Probab=99.13  E-value=1.5e-10  Score=76.69  Aligned_cols=53  Identities=21%  Similarity=0.327  Sum_probs=49.3

Q ss_pred             hhhHHHHHHHHHHHHHhhhhccchhh----hhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 031129           26 SCMGAAYGTAKSGVGVASMGVMRPEL----VMKSIVPVVMAGVLGIYGLIIAVIIST   78 (165)
Q Consensus        26 s~iGs~~G~g~ag~~~~~a~~~~P~~----~~~~li~~~~~e~~~iYglvia~li~~   78 (165)
                      +++|+++|++.+..+++++++||||.    ++++++..++.|+.+||++++++++++
T Consensus         1 aa~GagiG~G~i~~~a~~~iaRqPe~~~~l~~~~~ig~al~Ea~~i~~lvia~lllf   57 (58)
T TIGR01260         1 AAIGAAIGIGILGGKFLESAARQPELKPLLRTTMFIGMGLVDAIPMIAVVIALILLF   57 (58)
T ss_pred             CcchhHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            36899999999999999999999997    777999999999999999999999865

This model describes the subunit c in F1/F0-ATP synthase, a membrane associated multisubunit complex found in bacteria and organelles of higher eukaryotes, namely, mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. The functional role of subunit c, which is the part of F0 cluster, has been delineated in-vitro reconstitution experiments. Overall experimental proof exists that demonstrate the electrochemical gradient is converted into a rotational torque that leads to ATP synthesis.

>PRK07874 F0F1 ATP synthase subunit C; Validated

Probab=99.12  E-value=2.2e-10  Score=80.40  Aligned_cols=55  Identities=13%  Similarity=0.225  Sum_probs=49.3

Q ss_pred             HHHHHhhhHHHHHHHHHHHHHhhhhccchhh----hhhHHHHHHHHHHHHHHHHHHHHH
Q 031129           21 AALVFSCMGAAYGTAKSGVGVASMGVMRPEL----VMKSIVPVVMAGVLGIYGLIIAVI   75 (165)
Q Consensus        21 la~gls~iGs~~G~g~ag~~~~~a~~~~P~~----~~~~li~~~~~e~~~iYglvia~l   75 (165)
                      ++.+++++|+++|+|.+..+++++++||||.    ++++++..++.|+.+||+++++|+
T Consensus        21 ig~GlaaiGagiG~G~~~~~a~e~iARqPEa~~~l~~~m~lG~Al~Ea~~i~~lvia~l   79 (80)
T PRK07874         21 VGYGLAAIGPGIGVGIVVGKALEGMARQPEMAGQLRTTMFLGIAFVEALALIGLVAGFL   79 (80)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4455677999999999999999999999996    455899999999999999999986

>PRK06649 V-type ATP synthase subunit K; Validated

Probab=99.00  E-value=2.1e-09  Score=82.96  Aligned_cols=65  Identities=11%  Similarity=0.181  Sum_probs=62.4

Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 031129           13 FFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIIS   77 (165)
Q Consensus        13 ~~~~lG~~la~gls~iGs~~G~g~ag~~~~~a~~~~P~~~~~~li~~~~~e~~~iYglvia~li~   77 (165)
                      -+.+++++++++++..-|++.+++++.+.+++.+||||.+.|+++..+|+|+.++|+|++++++.
T Consensus        78 g~~~l~aGL~vGl~gl~Sa~~qG~v~aagi~~~ak~p~~f~~~ii~~~~~Et~Al~~lv~s~~~~  142 (143)
T PRK06649         78 PWLLLGAGIGGGLAIAASAFAQGKAAAGACDALAETGKGFANYLLVLGLIETVALFVMVFLMIFK  142 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            37899999999999999999999999999999999999999999999999999999999999864

>KOG3025 consensus Mitochondrial F1F0-ATP synthase, subunit c/ATP9/proteolipid [Energy production and conversion]

Probab=98.48  E-value=3.9e-07  Score=68.06  Aligned_cols=70  Identities=24%  Similarity=0.335  Sum_probs=63.5

Q ss_pred             cHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCc----hhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031129           88 YLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQP----KLFVGMILILIFAEALALYGLIVGIILSSR  158 (165)
Q Consensus        88 ~~~~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p----~l~~~~~i~~a~~E~~~I~glvia~ll~~~  158 (165)
                      .+....+++++|... ++..++|.|+|.+.++-+.+.+|||    ++|...+++.++.|+.++|.+.++|++++.
T Consensus        63 ~i~~aak~igag~at-vgv~gsg~gig~vf~~li~g~arnpslk~~lfs~ailgfalsea~glfclm~aflilfa  136 (137)
T KOG3025|consen   63 DIDTAAKFIGAGAAT-VGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFA  136 (137)
T ss_pred             HHHHHHHHhccchhh-hccccccchHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence            467788999999975 7777899999999999999999999    489999999999999999999999999874

>KOG0232 consensus Vacuolar H+-ATPase V0 sector, subunits c/c' [Energy production and conversion]

Probab=98.42  E-value=2.2e-07  Score=72.34  Aligned_cols=71  Identities=28%  Similarity=0.370  Sum_probs=65.9

Q ss_pred             chhH--HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 031129           10 TAPF--FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGI   80 (165)
Q Consensus        10 ~~~~--~~~lG~~la~gls~iGs~~G~g~ag~~~~~a~~~~P~~~~~~li~~~~~e~~~iYglvia~li~~~i   80 (165)
                      +.++  +..+++++.+++++.++++.+++.+++.++...|||+.+..+++..+|.|++++|||+++..+..+.
T Consensus        82 ~~l~~g~i~lsagl~vgl~~~~ag~aigi~gd~gvr~~~qQPr~fv~~iLiLif~evlGLygLiva~~l~~~~  154 (156)
T KOG0232|consen   82 YSLFTGFIVLSAGLAVGLAGLSAGLAIGIVGDAGVRGRAQQPRLFVGMILILIFAEVLGLYGLIVALALLTVG  154 (156)
T ss_pred             cchhhHHHHHHHHHHhhhcccCCCcCcCccccccchhhhcCchhhhhHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence            4555  7789999999999999999999999999999999999999999999999999999999999987653

>KOG0233 consensus Vacuolar H+-ATPase V0 sector, subunit c'' [Energy production and conversion]

Probab=98.20  E-value=9e-08  Score=75.95  Aligned_cols=73  Identities=30%  Similarity=0.458  Sum_probs=68.7

Q ss_pred             HHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 031129           89 LFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQ  161 (165)
Q Consensus        89 ~~~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p~l~~~~~i~~a~~E~~~I~glvia~ll~~~~~~  161 (165)
                      ...-|+.++.+++++++.++++||+=..+++-+++--|-|++.+|-++..+|+|+++||++++++++..|...
T Consensus        38 sp~~wa~lGI~l~ialSv~GaawGi~~tGssiiGggVkAPRI~TKnLisIIfCEavaiyglI~Aivls~kl~~  110 (196)
T KOG0233|consen   38 SPYMWASLGIALCIALSVLGAAWGIYITGSSIIGGGVKAPRIKTKNLISIIFCEAVAIYGLIMAIVLSTKLEN  110 (196)
T ss_pred             ChhHHHHhhHHHhhhhhhhhhheeEEEecceeecCcccCCcccccceEEEEeehHHHHHHHHHHHHHHhhhcc
Confidence            3466889999999999999999999999999999999999999999999999999999999999999998763

>KOG3025 consensus Mitochondrial F1F0-ATP synthase, subunit c/ATP9/proteolipid [Energy production and conversion]

Probab=97.51  E-value=0.00021  Score=53.58  Aligned_cols=65  Identities=22%  Similarity=0.312  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhccchhh----hhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031129           14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPEL----VMKSIVPVVMAGVLGIYGLIIAVIISTG   79 (165)
Q Consensus        14 ~~~lG~~la~gls~iGs~~G~g~ag~~~~~a~~~~P~~----~~~~li~~~~~e~~~iYglvia~li~~~   79 (165)
                      -.++|++.+. .+..|++.|++....+..-..+|||++    |...++.+++.|+.++|.+-++|++++.
T Consensus        68 ak~igag~at-vgv~gsg~gig~vf~~li~g~arnpslk~~lfs~ailgfalsea~glfclm~aflilfa  136 (137)
T KOG3025|consen   68 AKFIGAGAAT-VGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFA  136 (137)
T ss_pred             HHHhccchhh-hccccccchHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence            5689998877 567889999999999999999999986    5557889999999999999999998764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	165
2bl2_A	156	V-type sodium ATP synthase subunit K; V-type ATPas	5e-35
2xqu_A	82	C15_RING, ATP synthase C chain; membrane protein,	8e-05
1wu0_A	72	ATP synthase C chain; ATPase, membrane protein, hy	3e-04

>2bl2_A V-type sodium ATP synthase subunit K; V-type ATPase, K-ring, membrane rotor, sodium transporter, H ION transport, hydrolase, transmembrane; HET: LHG UMQ; 2.1A {Enterococcus hirae} PDB: 2cyd_A* 2db4_A* 3aou_A* Length = 156

 Score =  118 bits (298), Expect = 5e-35
 Identities = 40/159 (25%), Positives = 71/159 (44%), Gaps = 3/159 (1%)

Query: 1   MSSAFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV 60
           M            F  L  A A +FS +G+A G   +G   A++   +PE   ++++  +
Sbjct: 1   MMDYLITQNGGMVFAVLAMATATIFSGIGSAKGVGMTGEAAAALTTSQPEKFGQALILQL 60

Query: 61  MAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAG 120
           + G  G+YG +IA +I   +        +  G   L + L     GL +G+A G V  AG
Sbjct: 61  LPGTQGLYGFVIAFLIFINLGSD---MSVVQGLNFLGASLPIAFTGLFSGIAQGKVAAAG 117

Query: 121 VRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRA 159
           ++  A++P+     I+     E  A+ G ++  +L   A
Sbjct: 118 IQILAKKPEHATKGIIFAAMVETYAILGFVISFLLVLNA 156

>2xqu_A C15_RING, ATP synthase C chain; membrane protein, F1FO-ATP synthase rotor, ION (PROT translocation; HET: FME CVM; 1.84A {Arthrospira platensis} PDB: 2xqs_A* 2xqt_A* 2wie_A* 2w5j_A Length = 82

 Score = 38.5 bits (90), Expect = 8e-05
 Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 4/71 (5%)

Query: 89  LFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQP----KLFVGMILILIFAEAL 144
           L    + +++ LA G+  +  G+  G      V   A+QP    K+   ++L L F EAL
Sbjct: 5   LTTAASVIAAALAVGIGSIGPGLGQGQAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEAL 64

Query: 145 ALYGLIVGIIL 155
            +YGL+V ++L
Sbjct: 65  TIYGLVVALVL 75

>1wu0_A ATP synthase C chain; ATPase, membrane protein, hydrogen ION transport, hydrolase; NMR {Bacillus SP} Length = 72

 Score = 36.5 bits (85), Expect = 3e-04
 Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 4/71 (5%)

Query: 92  GYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQP----KLFVGMILILIFAEALALY 147
               L++ +A GL  L AG+  G++    +   A+QP     L   M + +   EAL + 
Sbjct: 2   SLGVLAAAIAVGLGALGAGIGNGLIVSRTIEGIARQPELRPVLQTTMFIGVALVEALPII 61

Query: 148 GLIVGIILSSR 158
           G++   I   R
Sbjct: 62  GVVFSFIYLGR 72

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	165
2bl2_A	156	V-type sodium ATP synthase subunit K; V-type ATPas	100.0
2xqu_A	82	C15_RING, ATP synthase C chain; membrane protein,	99.73
1wu0_A	72	ATP synthase C chain; ATPase, membrane protein, hy	99.68
2wgm_A	89	ATP synthase subunit C, sodium ION specific; F1FO-	99.68
2x2v_A	69	ATP synthase subunit C; membrane protein, ION tran	99.67
1a91_A	79	F1FO ATPase subunit C; membrane protein, hydrogen	99.65
2xqu_A	82	C15_RING, ATP synthase C chain; membrane protein,	99.57
2x2v_A	69	ATP synthase subunit C; membrane protein, ION tran	99.55
2xnd_J	72	ATP synthase lipid-binding protein, mitochondrial;	99.55
4f4s_A	76	ATP synthase subunit 9, mitochondrial; C10 ring, F	99.54
1wu0_A	72	ATP synthase C chain; ATPase, membrane protein, hy	99.54
1a91_A	79	F1FO ATPase subunit C; membrane protein, hydrogen	99.46
2wgm_A	89	ATP synthase subunit C, sodium ION specific; F1FO-	99.46
2bl2_A	156	V-type sodium ATP synthase subunit K; V-type ATPas	99.42
2xnd_J	72	ATP synthase lipid-binding protein, mitochondrial;	99.31
4f4s_A	76	ATP synthase subunit 9, mitochondrial; C10 ring, F	99.22

>2bl2_A V-type sodium ATP synthase subunit K; V-type ATPase, K-ring, membrane rotor, sodium transporter, H ION transport, hydrolase, transmembrane; HET: LHG UMQ; 2.1A {Enterococcus hirae} PDB: 2cyd_A* 2db4_A* 3aou_A*

Probab=100.00  E-value=2.1e-36  Score=235.05  Aligned_cols=146  Identities=26%  Similarity=0.487  Sum_probs=140.6

Q ss_pred             chhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccH
Q 031129           10 TAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYL   89 (165)
Q Consensus        10 ~~~~~~~lG~~la~gls~iGs~~G~g~ag~~~~~a~~~~P~~~~~~li~~~~~e~~~iYglvia~li~~~i~~~~~~~~~   89 (165)
                      .+|+++++|++++++++++|++||+++++.+.+++.+||||.++|++++++|||+++||||++++++.++++++   +++
T Consensus        10 ~~~~~~~lGa~la~~ls~iGaa~G~~~aG~a~~g~~~~~P~~~~k~li~~~l~e~~~IYGlvva~li~~~l~~~---~~~   86 (156)
T 2bl2_A           10 GGMVFAVLAMATATIFSGIGSAKGVGMTGEAAAALTTSQPEKFGQALILQLLPGTQGLYGFVIAFLIFINLGSD---MSV   86 (156)
T ss_dssp             CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHGGGHHHHHHHHHHHHHHHTCCTT---CCH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc---hhH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999998753   578


Q ss_pred             HhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031129           90 FDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSR  158 (165)
Q Consensus        90 ~~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p~l~~~~~i~~a~~E~~~I~glvia~ll~~~  158 (165)
                      .+++.++++|+++|++++++|++||+++++++++++||||.++|+++..+|+|+++||+++++++++++
T Consensus        87 ~~g~~~igagl~~Gla~lgagigiG~v~~~~i~a~arqPe~~~~~ii~~a~~Ea~ai~glvia~ll~~~  155 (156)
T 2bl2_A           87 VQGLNFLGASLPIAFTGLFSGIAQGKVAAAGIQILAKKPEHATKGIIFAAMVETYAILGFVISFLLVLN  155 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999999999999999999999999999876

>2xqu_A C15_RING, ATP synthase C chain; membrane protein, F1FO-ATP synthase rotor, ION (PROT translocation; HET: FME CVM; 1.84A {Arthrospira platensis} PDB: 2xqs_A* 2xqt_A* 2wie_A* 2w5j_A

Probab=99.73  E-value=3.4e-17  Score=114.56  Aligned_cols=74  Identities=28%  Similarity=0.475  Sum_probs=69.8

Q ss_pred             cHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 031129           88 YLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPK----LFVGMILILIFAEALALYGLIVGIILSSRAGQ  161 (165)
Q Consensus        88 ~~~~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p~----l~~~~~i~~a~~E~~~I~glvia~ll~~~~~~  161 (165)
                      .+..+++++++++++|++++++|+++|+++++++++++||||    +|+++++..+++|+++||++++++++++..++
T Consensus         4 ~~~~~~~~igagl~~Gla~igagig~G~~~~~~i~a~arqPe~~~~l~~~~ii~~al~Ea~ai~glvia~ll~f~~p~   81 (82)
T 2xqu_A            4 NLTTAASVIAAALAVGIGSIGPGLGQGQAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALVLLFANPF   81 (82)
T ss_dssp             CHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            467899999999999999999999999999999999999998    78889999999999999999999999998654

>1wu0_A ATP synthase C chain; ATPase, membrane protein, hydrogen ION transport, hydrolase; NMR {Bacillus SP}

Probab=99.68  E-value=1.1e-16  Score=109.34  Aligned_cols=66  Identities=27%  Similarity=0.482  Sum_probs=62.5

Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031129           92 GYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPK----LFVGMILILIFAEALALYGLIVGIILSS  157 (165)
Q Consensus        92 ~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p~----l~~~~~i~~a~~E~~~I~glvia~ll~~  157 (165)
                      +++++++++++|++++++|++||+++++++++++||||    +|+++++..+++|+++||++++++++++
T Consensus         2 ~~~~igagl~~Gla~igagig~G~~~~~~~~~~arqPe~~~~l~~~~ii~~al~Ea~ai~~lvia~lllf   71 (72)
T 1wu0_A            2 SLGVLAAAIAVGLGALGAGIGNGLIVSRTIEGIARQPELRPVLQTTMFIGVALVEALPIIGVVFSFIYLG   71 (72)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            46789999999999999999999999999999999998    7777999999999999999999999876

>2wgm_A ATP synthase subunit C, sodium ION specific; F1FO-ATP synthase rotor, sodium-motive force, cell inner membrane, CF(0), membrane, transport; HET: F09; 2.35A {Ilyobacter tartaricus} PDB: 1yce_A*

Probab=99.68  E-value=2.3e-16  Score=111.88  Aligned_cols=74  Identities=24%  Similarity=0.391  Sum_probs=69.8

Q ss_pred             cHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 031129           88 YLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPK----LFVGMILILIFAEALALYGLIVGIILSSRAGQS  162 (165)
Q Consensus        88 ~~~~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p~----l~~~~~i~~a~~E~~~I~glvia~ll~~~~~~~  162 (165)
                      ++..+++++++|+++ ++++++|++||+++++++++++||||    +|+++++..+++|+++||+++++++++++.++-
T Consensus         8 ~~~~~~~~igaGla~-la~iGagig~G~v~~~ai~a~arqPe~~~~l~~~~ii~~al~Ea~ai~glvia~lllf~~p~~   85 (89)
T 2wgm_A            8 TVVLAASAVGAGTAM-IAGIGPGVGQGYAAGKAVESVARQPEAKGDIISTMVLGQAVAESTGIYSLVIALILLYANPFV   85 (89)
T ss_dssp             HHHHHHHHHHHHHHG-GGGHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSST
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            467889999999999 99999999999999999999999998    699999999999999999999999999987753

>2x2v_A ATP synthase subunit C; membrane protein, ION transport, ATP synthesis, transmembran CF(0), membrane, transport, C-ring rotor; HET: FME DPV; 2.50A {Bacillus pseudofirmus OF4}

Probab=99.67  E-value=3.2e-16  Score=106.29  Aligned_cols=63  Identities=24%  Similarity=0.472  Sum_probs=59.5

Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031129           95 HLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPK----LFVGMILILIFAEALALYGLIVGIILSS  157 (165)
Q Consensus        95 ~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p~----l~~~~~i~~a~~E~~~I~glvia~ll~~  157 (165)
                      ++++++++|++++++|++||+++++++++++||||    +|+++++..+++|+++||++++++++++
T Consensus         3 ~igagl~~Gla~igagig~G~~~~~~i~~~arqPe~~~~l~~~~ii~~al~Ea~ai~~lvia~lllf   69 (69)
T 2x2v_A            3 FLGAAIAAGLAAVAGAIAVAIIVKATIEGTTRQPELRGTLQTLMFIGVPLAEAVPIIAIVISLLILF   69 (69)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            58999999999999999999999999999999998    6666999999999999999999999864

>1a91_A F1FO ATPase subunit C; membrane protein, hydrogen ION transport; NMR {Escherichia coli} SCOP: f.17.1.1 PDB: 1c0v_A 1c17_A 1c99_A 1qo1_K 1aty_A 1l6t_A 1ijp_A

Probab=99.65  E-value=8.6e-16  Score=106.74  Aligned_cols=67  Identities=21%  Similarity=0.418  Sum_probs=63.0

Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 031129           93 YAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPK----LFVGMILILIFAEALALYGLIVGIILSSRA  159 (165)
Q Consensus        93 ~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p~----l~~~~~i~~a~~E~~~I~glvia~ll~~~~  159 (165)
                      +..+++++.+|++++++|+++|+++++++++++||||    +|++++++.+++|+++||++++++++++..
T Consensus         8 m~~~~a~l~~Gla~igagig~G~v~~~~i~~~arqPe~~~~l~~~~ii~~al~Ea~ai~glvia~lllf~~   78 (79)
T 1a91_A            8 LLYMAAAVMMGLAAIGAAIGIGILGGKFLEGAARQPDLIPLLRTQFFIVMGLVDAIPMIAVGLGLYVMFAV   78 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4678999999999999999999999999999999998    888899999999999999999999998753

>2xqu_A C15_RING, ATP synthase C chain; membrane protein, F1FO-ATP synthase rotor, ION (PROT translocation; HET: FME CVM; 1.84A {Arthrospira platensis} PDB: 2xqs_A* 2xqt_A* 2wie_A* 2w5j_A

Probab=99.57  E-value=1.4e-14  Score=101.24  Aligned_cols=73  Identities=18%  Similarity=0.270  Sum_probs=66.5

Q ss_pred             CCchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhccchhh----hhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 031129            8 DETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPEL----VMKSIVPVVMAGVLGIYGLIIAVIISTGI   80 (165)
Q Consensus         8 ~~~~~~~~~lG~~la~gls~iGs~~G~g~ag~~~~~a~~~~P~~----~~~~li~~~~~e~~~iYglvia~li~~~i   80 (165)
                      ..+...+.++|++++++++++|+++|+++++.+++++.+||||.    ++++++..+|+|+++||++++++++.+..
T Consensus         3 ~~~~~~~~~igagl~~Gla~igagig~G~~~~~~i~a~arqPe~~~~l~~~~ii~~al~Ea~ai~glvia~ll~f~~   79 (82)
T 2xqu_A            3 SNLTTAASVIAAALAVGIGSIGPGLGQGQAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALVLLFAN   79 (82)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            34555689999999999999999999999999999999999995    56699999999999999999999998764

>2x2v_A ATP synthase subunit C; membrane protein, ION transport, ATP synthesis, transmembran CF(0), membrane, transport, C-ring rotor; HET: FME DPV; 2.50A {Bacillus pseudofirmus OF4}

Probab=99.55  E-value=1.7e-14  Score=97.79  Aligned_cols=62  Identities=26%  Similarity=0.297  Sum_probs=58.7

Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhhhhccchhhhhh----HHHHHHHHHHHHHHHHHHHHHHH
Q 031129           16 FLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMK----SIVPVVMAGVLGIYGLIIAVIIS   77 (165)
Q Consensus        16 ~lG~~la~gls~iGs~~G~g~ag~~~~~a~~~~P~~~~~----~li~~~~~e~~~iYglvia~li~   77 (165)
                      ++|++++++++++|+++|+++++.+++++.+||||.++|    +++..+|+|+++||++++++++.
T Consensus         3 ~igagl~~Gla~igagig~G~~~~~~i~~~arqPe~~~~l~~~~ii~~al~Ea~ai~~lvia~lll   68 (69)
T 2x2v_A            3 FLGAAIAAGLAAVAGAIAVAIIVKATIEGTTRQPELRGTLQTLMFIGVPLAEAVPIIAIVISLLIL   68 (69)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            689999999999999999999999999999999996555    99999999999999999999985

>2xnd_J ATP synthase lipid-binding protein, mitochondrial; ATP phosphorylase (H+ transporting), ATP synthesis, F1FO ATP synthase, hydrolase, ION transport; HET: ANP; 3.50A {Bos taurus}

Probab=99.55  E-value=1.3e-15  Score=104.08  Aligned_cols=66  Identities=26%  Similarity=0.374  Sum_probs=60.9

Q ss_pred             hHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031129           91 DGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPK----LFVGMILILIFAEALALYGLIVGIILSS  157 (165)
Q Consensus        91 ~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p~----l~~~~~i~~a~~E~~~I~glvia~ll~~  157 (165)
                      ++++++++|+++ ++++++|+++|+++++++++++||||    +|+++++..+++|+++||++++++++++
T Consensus         3 ~~~~~igaGLa~-l~~~gagig~G~~~~~~i~~~arqPe~~~~l~~~~~i~~al~Ea~~i~~lvia~lllf   72 (72)
T 2xnd_J            3 TAAKFIGAGAAT-VGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILF   72 (72)
T ss_dssp             TTTTTTTTTGGG-GGGHHHHHHHHHHHHHHHHHSSSCSCCCCCCSSTTHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            356788999999 99999999999999999999999996    7789999999999999999999998764

>4f4s_A ATP synthase subunit 9, mitochondrial; C10 ring, F1FO ATP synthase, oligomycin, membr protein-antibiotic complex; HET: FME EFO; 1.90A {Saccharomyces cerevisiae} PDB: 2wpd_J* 2xok_K* 3u2y_K* 3u32_K* 3ud0_K* 3zry_J* 3u2f_K*

Probab=99.54  E-value=3.1e-14  Score=97.87  Aligned_cols=69  Identities=28%  Similarity=0.376  Sum_probs=64.2

Q ss_pred             HHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCc----hhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031129           89 LFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQP----KLFVGMILILIFAEALALYGLIVGIILSSR  158 (165)
Q Consensus        89 ~~~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p----~l~~~~~i~~a~~E~~~I~glvia~ll~~~  158 (165)
                      +..+.+++++|++. ++..++|+|+|.+.++.+++++|||    ++|++++++.++.|+.+||+|+++++++|-
T Consensus         3 lv~aak~IGaGlA~-ig~~G~giGiG~vfg~~i~~~aRnP~~~~~l~~~~ilG~Al~Ea~glf~LvvA~lllFa   75 (76)
T 4f4s_A            3 LVLAAKYIGAGIST-IGLLGAGIGIAIVFAALINGVSRNPSIKDTVFPMAILGFALSEATGLFCLMVSFLLLFG   75 (76)
T ss_dssp             HHHHHHHHHHHHTT-TTHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHH-HHcchHHHhHHHHHHHHHHHHhcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            55778999999997 9999999999999999999999999    499999999999999999999999999874

>1wu0_A ATP synthase C chain; ATPase, membrane protein, hydrogen ION transport, hydrolase; NMR {Bacillus SP}

Probab=99.54  E-value=1.8e-14  Score=98.39  Aligned_cols=65  Identities=25%  Similarity=0.297  Sum_probs=60.6

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhccchhhhhh----HHHHHHHHHHHHHHHHHHHHHHHh
Q 031129           14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMK----SIVPVVMAGVLGIYGLIIAVIIST   78 (165)
Q Consensus        14 ~~~lG~~la~gls~iGs~~G~g~ag~~~~~a~~~~P~~~~~----~li~~~~~e~~~iYglvia~li~~   78 (165)
                      +.++|++++++++++|+++|+++++.+++++.+||||.++|    +++..+|+|+++||++++++++.+
T Consensus         3 ~~~igagl~~Gla~igagig~G~~~~~~~~~~arqPe~~~~l~~~~ii~~al~Ea~ai~~lvia~lllf   71 (72)
T 1wu0_A            3 LGVLAAAIAVGLGALGAGIGNGLIVSRTIEGIARQPELRPVLQTTMFIGVALVEALPIIGVVFSFIYLG   71 (72)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            46799999999999999999999999999999999996555    999999999999999999999865

>1a91_A F1FO ATPase subunit C; membrane protein, hydrogen ION transport; NMR {Escherichia coli} SCOP: f.17.1.1 PDB: 1c0v_A 1c17_A 1c99_A 1qo1_K 1aty_A 1l6t_A 1ijp_A

Probab=99.46  E-value=2.9e-13  Score=93.90  Aligned_cols=66  Identities=14%  Similarity=0.236  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhccchhh----hhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031129           14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPEL----VMKSIVPVVMAGVLGIYGLIIAVIISTG   79 (165)
Q Consensus        14 ~~~lG~~la~gls~iGs~~G~g~ag~~~~~a~~~~P~~----~~~~li~~~~~e~~~iYglvia~li~~~   79 (165)
                      +..++++++.+++++|+++|++.++.+++++++||||.    ++++++..+|+|+++||+|++++++.+.
T Consensus         8 m~~~~a~l~~Gla~igagig~G~v~~~~i~~~arqPe~~~~l~~~~ii~~al~Ea~ai~glvia~lllf~   77 (79)
T 1a91_A            8 LLYMAAAVMMGLAAIGAAIGIGILGGKFLEGAARQPDLIPLLRTQFFIVMGLVDAIPMIAVGLGLYVMFA   77 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45789999999999999999999999999999999994    5569999999999999999999998764

>2wgm_A ATP synthase subunit C, sodium ION specific; F1FO-ATP synthase rotor, sodium-motive force, cell inner membrane, CF(0), membrane, transport; HET: F09; 2.35A {Ilyobacter tartaricus} PDB: 1yce_A*

Probab=99.46  E-value=2.9e-13  Score=95.89  Aligned_cols=69  Identities=22%  Similarity=0.305  Sum_probs=64.2

Q ss_pred             hhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhccchhh----hhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 031129           11 APFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPEL----VMKSIVPVVMAGVLGIYGLIIAVIISTGI   80 (165)
Q Consensus        11 ~~~~~~lG~~la~gls~iGs~~G~g~ag~~~~~a~~~~P~~----~~~~li~~~~~e~~~iYglvia~li~~~i   80 (165)
                      ...+.++|+++++ ++++|+++|+++++.+++++++||||.    ++++++..+|+|+++||++++++++.+..
T Consensus        10 ~~~~~~igaGla~-la~iGagig~G~v~~~ai~a~arqPe~~~~l~~~~ii~~al~Ea~ai~glvia~lllf~~   82 (89)
T 2wgm_A           10 VLAASAVGAGTAM-IAGIGPGVGQGYAAGKAVESVARQPEAKGDIISTMVLGQAVAESTGIYSLVIALILLYAN   82 (89)
T ss_dssp             HHHHHHHHHHHHG-GGGHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3447889999999 999999999999999999999999995    88899999999999999999999999864

>2bl2_A V-type sodium ATP synthase subunit K; V-type ATPase, K-ring, membrane rotor, sodium transporter, H ION transport, hydrolase, transmembrane; HET: LHG UMQ; 2.1A {Enterococcus hirae} PDB: 2cyd_A* 2db4_A* 3aou_A*

Probab=99.42  E-value=6.3e-13  Score=102.92  Aligned_cols=71  Identities=20%  Similarity=0.418  Sum_probs=68.2

Q ss_pred             HhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 031129           90 FDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAG  160 (165)
Q Consensus        90 ~~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p~l~~~~~i~~a~~E~~~I~glvia~ll~~~~~  160 (165)
                      ...+.+++++++++++++++++|+++++++++++.+||||+++|.++..+++|+++|||++++++++++.+
T Consensus        11 ~~~~~~lGa~la~~ls~iGaa~G~~~aG~a~~g~~~~~P~~~~k~li~~~l~e~~~IYGlvva~li~~~l~   81 (156)
T 2bl2_A           11 GMVFAVLAMATATIFSGIGSAKGVGMTGEAAAALTTSQPEKFGQALILQLLPGTQGLYGFVIAFLIFINLG   81 (156)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHGGGHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            35789999999999999999999999999999999999999999999999999999999999999999876

>2xnd_J ATP synthase lipid-binding protein, mitochondrial; ATP phosphorylase (H+ transporting), ATP synthesis, F1FO ATP synthase, hydrolase, ION transport; HET: ANP; 3.50A {Bos taurus}

Probab=99.31  E-value=5.5e-13  Score=91.01  Aligned_cols=63  Identities=22%  Similarity=0.322  Sum_probs=57.6

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhccchhhh----hhHHHHHHHHHHHHHHHHHHHHHHH
Q 031129           14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELV----MKSIVPVVMAGVLGIYGLIIAVIIS   77 (165)
Q Consensus        14 ~~~lG~~la~gls~iGs~~G~g~ag~~~~~a~~~~P~~~----~~~li~~~~~e~~~iYglvia~li~   77 (165)
                      +.++|+++++ ++++|+++|+++++.+++++++||||.+    +++++..+|+|+++||+|+++++++
T Consensus         5 ~~~igaGLa~-l~~~gagig~G~~~~~~i~~~arqPe~~~~l~~~~~i~~al~Ea~~i~~lvia~lll   71 (72)
T 2xnd_J            5 AKFIGAGAAT-VGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLIL   71 (72)
T ss_dssp             TTTTTTTGGG-GGGHHHHHHHHHHHHHHHHHSSSCSCCCCCCSSTTHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4568899999 9999999999999999999999999854    4689999999999999999999875

>4f4s_A ATP synthase subunit 9, mitochondrial; C10 ring, F1FO ATP synthase, oligomycin, membr protein-antibiotic complex; HET: FME EFO; 1.90A {Saccharomyces cerevisiae} PDB: 2wpd_J* 2xok_K* 3u2y_K* 3u32_K* 3ud0_K* 3zry_J* 3u2f_K*

Probab=99.22  E-value=2.5e-11  Score=83.33  Aligned_cols=67  Identities=16%  Similarity=0.294  Sum_probs=60.2

Q ss_pred             hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhccchhh----hhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031129           12 PFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPEL----VMKSIVPVVMAGVLGIYGLIIAVIISTG   79 (165)
Q Consensus        12 ~~~~~lG~~la~gls~iGs~~G~g~ag~~~~~a~~~~P~~----~~~~li~~~~~e~~~iYglvia~li~~~   79 (165)
                      ....++|++++. ++.+|+++|+|.+..+.+++++||||.    ++.+++.+++.|+.++|+|+++|++++.
T Consensus         5 ~aak~IGaGlA~-ig~~G~giGiG~vfg~~i~~~aRnP~~~~~l~~~~ilG~Al~Ea~glf~LvvA~lllFa   75 (76)
T 4f4s_A            5 LAAKYIGAGIST-IGLLGAGIGIAIVFAALINGVSRNPSIKDTVFPMAILGFALSEATGLFCLMVSFLLLFG   75 (76)
T ss_dssp             HHHHHHHHHHTT-TTHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHH-HHcchHHHhHHHHHHHHHHHHhcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            446789999998 889999999999999999999999985    5558999999999999999999999764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	165
d1c99a_	79	f.17.1.1 (A:) F1F0 ATP synthase subunit C {Escheri	7e-08

>d1c99a_ f.17.1.1 (A:) F1F0 ATP synthase subunit C {Escherichia coli [TaxId: 562]} Length = 79

class: Membrane and cell surface proteins and peptides
fold: Transmembrane helix hairpin
superfamily: F1F0 ATP synthase subunit C
family: F1F0 ATP synthase subunit C
domain: F1F0 ATP synthase subunit C
species: Escherichia coli [TaxId: 562]

 Score = 45.3 bits (108), Expect = 7e-08
 Identities = 15/71 (21%), Positives = 35/71 (49%), Gaps = 4/71 (5%)

Query: 89  LFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQP----KLFVGMILILIFAEAL 144
           L     ++++ +  GLA + A + IGI+G   +   A+QP     L     +++   +A+
Sbjct: 4   LNMDLLYMAAAVMMGLAAIGAAIGIGILGGKFLEGAARQPDLIPLLRTQFFIVMGLVDAI 63

Query: 145 ALYGLIVGIIL 155
            +  + +G+ +
Sbjct: 64  PMIAVGLGLYV 74

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	165
d1c99a_	79	F1F0 ATP synthase subunit C {Escherichia coli [Tax	99.7
d1c99a_	79	F1F0 ATP synthase subunit C {Escherichia coli [Tax	99.39

>d1c99a_ f.17.1.1 (A:) F1F0 ATP synthase subunit C {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: Transmembrane helix hairpin
superfamily: F1F0 ATP synthase subunit C
family: F1F0 ATP synthase subunit C
domain: F1F0 ATP synthase subunit C
species: Escherichia coli [TaxId: 562]

Probab=99.70  E-value=5.2e-17  Score=110.97  Aligned_cols=72  Identities=21%  Similarity=0.374  Sum_probs=67.5

Q ss_pred             cHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 031129           88 YLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPK----LFVGMILILIFAEALALYGLIVGIILSSRA  159 (165)
Q Consensus        88 ~~~~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p~----l~~~~~i~~a~~E~~~I~glvia~ll~~~~  159 (165)
                      ++..++.++++++.+|++++++|+|+|+++++++|+++||||    ++++++++.++.|+++||+++++++++|..
T Consensus         3 ~~~~~~~~l~agl~~gl~aiG~giG~G~~~~~ale~~ARqPE~~~~l~~~m~ig~al~Ea~~i~~lvialillFa~   78 (79)
T d1c99a_           3 NLNMDLLYMAAAVMMGLAAIGAAIGIGILGGKFLEGAARQPDLIPLLRTQFFIVMGLVDAIPMIAVGLGLYVMFAV   78 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            355788999999999999999999999999999999999994    999999999999999999999999998753

>d1c99a_ f.17.1.1 (A:) F1F0 ATP synthase subunit C {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: Transmembrane helix hairpin
superfamily: F1F0 ATP synthase subunit C
family: F1F0 ATP synthase subunit C
domain: F1F0 ATP synthase subunit C
species: Escherichia coli [TaxId: 562]

Probab=99.39  E-value=5.1e-13  Score=90.90  Aligned_cols=69  Identities=13%  Similarity=0.191  Sum_probs=63.4

Q ss_pred             hhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhccchhh----hhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031129           11 APFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPEL----VMKSIVPVVMAGVLGIYGLIIAVIISTG   79 (165)
Q Consensus        11 ~~~~~~lG~~la~gls~iGs~~G~g~ag~~~~~a~~~~P~~----~~~~li~~~~~e~~~iYglvia~li~~~   79 (165)
                      ..-+.+++++++++++++|+++|+|..+.+++++++||||.    ++++++..++.|+.+||++++++++.+.
T Consensus         5 ~~~~~~l~agl~~gl~aiG~giG~G~~~~~ale~~ARqPE~~~~l~~~m~ig~al~Ea~~i~~lvialillFa   77 (79)
T d1c99a_           5 NMDLLYMAAAVMMGLAAIGAAIGIGILGGKFLEGAARQPDLIPLLRTQFFIVMGLVDAIPMIAVGLGLYVMFA   77 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34578899999999999999999999999999999999975    6679999999999999999999999764