Citrus Sinensis ID: 031137

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-----
Protein Sequence
MILCHLQQSSGCLGCFIRPPVNTSASNLSKELGVPGRSAGKRSISEDFWTTSTCDMDNSAVQSQGSISSLGTNNLIPDTNGGSGSASAPSEFVNHGFLLWNQTRQRWIGNKKAENRTHQVREPKLNWNATYESLLGSNKPFPQPIPLSEMVDFLVDIWEQEGMYD
Secondary Structure (PSIPRED)
cEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHcccccccccccHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cEEEEEEEcccccccccccccEEEEEcccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccEEcccccHHHHccccccccccccHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
milchlqqssgclgcfirppvntsasnlskelgvpgrsagkrsisedfwttstcdmdnsavqsqgsisslgtnnlipdtnggsgsasapsefvnhgflLWNQTRQRWIGnkkaenrthqvrepklnwnATYESllgsnkpfpqpiplsEMVDFLVDIWEQEGMYD
Flexible Loop (DISEMBL)
MILCHLQQSSGCLGCFIRPPVNTSasnlskelgvpgrsagkrsISEDFWTTSTCDMDNSAVQSQGSISSLGTNNLIPDTNGGSGSASAPSEFVNHGFLLWNQTRQRWIGNKkaenrthqvrepklNWNATYESLLGSNKPFPQPIPLSEMVDFLVDIWEQEGMYD
Low Complexity Region (SEG)
MILCHLQQSSGCLGCFIRPPVNTSASNLSKELGVPGRSAGKRSISEDFWTTSTCDMDNSAVQSQGSISSLGTNNLIPDTNGGSGSASAPSEFVNHGFLLWNQTRQRWIGNKKAENRTHQVREPKLNWNATYESLLGSNKPFPQPIPLSEMVDFLVDIWEQEGMYD
Disordered region (IsUnstruct)
**LCHLQQSSGCLGCFIRP************************************************************************FVNHGFLLWNQTRQRWIGNK************KLNWNATYESLLGSNKPFPQPIPLSEMVDFLVDIWE******
Disordered Region (DISOPRED)
MILCHLQQSSGCLGCFIRP*****************************WT********************************************HGFLLWNQTRQ***********************ATYESLLGSNKPFPQPIPLSEMVDFLVDIWEQEGMY*
Disordered Region (DISEMBL)
MILCHLQQSSGCLGCFIRPPVNTSASNLSKE**********RSISEDFWTTSTCDMDNSAVQSQGSISSLGTNNLIPDTN********PSEFVNHGFLLWNQTRQRWIGNKKAENRTHQVREPKLNWNATYESLLGSNKPFPQPIPLSEMVDFLVDIWEQEGMYD
Disordered Region (DISPRO)
MILCHLQQSSGCLGCFIRPPVNTSASNLSKELG*PGRSAG***IS******************************************APSEFVNHGFLLWNQTRQRWIGNKK*******VREPKLNWNATYESLLGSNKPFPQPIPLSEMVDFLVDIWEQEGMYD
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MILCHLQQSSGCLGCFIRPPVNTSASNLSKELGVPGRSAGKRSISEDFWTTSTCDMDNSAVQSQGSISSLGTNNLIPDTNGGSGSASAPSEFVNHGFLLWNQTRQRWIGNKKAENRTHQVREPKLNWNATYESLLGSNKPFPQPIPLSEMVDFLVDIWEQEGMYD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	165
255553169	190	conserved hypothetical protein [Ricinus	0.993	0.863	0.696	2e-57
351720932	160	uncharacterized protein LOC547651 [Glyci	0.939	0.968	0.685	2e-55
356547434	193	PREDICTED: uncharacterized protein LOC10	0.981	0.839	0.642	5e-53
351721931	156	uncharacterized protein LOC100500161 [Gl	0.921	0.974	0.677	8e-53
357468213	274	hypothetical protein MTR_4g010330 [Medic	0.951	0.572	0.638	1e-52
224059178	160	predicted protein [Populus trichocarpa]	0.969	1.0	0.681	1e-52
388517837	159	unknown [Lotus japonicus]	0.939	0.974	0.651	2e-52
357468215	156	hypothetical protein MTR_4g010330 [Medic	0.903	0.955	0.651	9e-52
449436148	174	PREDICTED: uncharacterized protein LOC10	0.933	0.885	0.641	5e-50
351724527	174	uncharacterized protein LOC100499770 [Gl	0.939	0.890	0.605	1e-49

>gi|255553169|ref|XP_002517627.1| conserved hypothetical protein [Ricinus communis] gi|223543259|gb|EEF44791.1| conserved hypothetical protein [Ricinus communis]

 Score =  226 bits (576), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 115/165 (69%), Positives = 132/165 (80%), Gaps = 1/165 (0%)

Query: 1   MILCHLQQSSGCLGCFIRPPVNTSASNLSKELGVPGRSAGKRSISEDFWTTSTCDMDNSA 60
           +I+  LQQSSGCLG   +P + T     SK   + G++  K SISEDFWTTSTCDMDNSA
Sbjct: 27  LIVYDLQQSSGCLGSCKKPRL-TLIDEQSKGSNIQGQTVKKPSISEDFWTTSTCDMDNSA 85

Query: 61  VQSQGSISSLGTNNLIPDTNGGSGSASAPSEFVNHGFLLWNQTRQRWIGNKKAENRTHQV 120
           VQSQGS+SS+ T N   D +G S S SAPS+FVNHG ++WNQTRQRW+G+KK+ NR  Q 
Sbjct: 86  VQSQGSMSSISTVNQTLDLHGSSSSGSAPSQFVNHGLIVWNQTRQRWVGDKKSLNRARQS 145

Query: 121 REPKLNWNATYESLLGSNKPFPQPIPLSEMVDFLVDIWEQEGMYD 165
           REPKLNWNATYESLLGSNKPFP+PIPLSEMVDFLVDIWEQEGMYD
Sbjct: 146 REPKLNWNATYESLLGSNKPFPRPIPLSEMVDFLVDIWEQEGMYD 190

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351720932|ref|NP_001235913.1| uncharacterized protein LOC547651 [Glycine max] gi|22597160|gb|AAN03467.1| hypothetical protein [Glycine max]

 Score =  219 bits (559), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 107/156 (68%), Positives = 122/156 (78%), Gaps = 1/156 (0%)

Query: 11  GCLGCFIRPPVNTSASNLSKELGVPGRSAGKRSISEDFWTTSTCDMDNSAVQSQGSISSL 70
           GC+GC+ RP ++ +    SK L   G    K S SEDFWTTST DMDNSAVQSQGSISS 
Sbjct: 5   GCVGCYKRPTLSATVDVPSKGLATQGNGVRKPSSSEDFWTTSTHDMDNSAVQSQGSISSA 64

Query: 71  G-TNNLIPDTNGGSGSASAPSEFVNHGFLLWNQTRQRWIGNKKAENRTHQVREPKLNWNA 129
             TN  +    G S S++ P+EFVNHG +LWNQTRQRW+GNKK ENRT Q+REPKLNWNA
Sbjct: 65  SLTNQAVVLHAGSSKSSTNPTEFVNHGVILWNQTRQRWVGNKKLENRTQQLREPKLNWNA 124

Query: 130 TYESLLGSNKPFPQPIPLSEMVDFLVDIWEQEGMYD 165
           TYESLLGSNKPF QPIPL+EMVDFLVDIWEQ+G+YD
Sbjct: 125 TYESLLGSNKPFHQPIPLAEMVDFLVDIWEQDGLYD 160

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356547434|ref|XP_003542117.1| PREDICTED: uncharacterized protein LOC100802439 [Glycine max]

 Score =  212 bits (539), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 106/165 (64%), Positives = 125/165 (75%), Gaps = 3/165 (1%)

Query: 1   MILCHLQQSSGCLGCFIRPPVNTSASNLSKELGVPGRSAGKRSISEDFWTTSTCDMDNSA 60
           +   H   SSGCLG F +PP+  +A    K L   G++A K S SEDFW TST DMDNSA
Sbjct: 32  LTTLHAYGSSGCLGPFKKPPLIATADVPPKGLRKQGKAAKKPSTSEDFWITSTHDMDNSA 91

Query: 61  VQSQGSISSLGTNNLIPDTNGGSGSASAPSEFVNHGFLLWNQTRQRWIGNKKAENRTHQV 120
           VQSQGSISS    N   D +GGS +   P+EFVNHG +LWNQTRQ WIGNK+++N+T Q+
Sbjct: 92  VQSQGSISSASITNQAADPHGGSCN---PTEFVNHGLILWNQTRQAWIGNKRSKNQTEQL 148

Query: 121 REPKLNWNATYESLLGSNKPFPQPIPLSEMVDFLVDIWEQEGMYD 165
           REPKL+WNATYESLLGSNKPFPQ I L+EMV+FLVDIWEQEG+YD
Sbjct: 149 REPKLSWNATYESLLGSNKPFPQHISLAEMVEFLVDIWEQEGLYD 193

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351721931|ref|NP_001237738.1| uncharacterized protein LOC100500161 [Glycine max] gi|255629494|gb|ACU15093.1| unknown [Glycine max]

 Score =  211 bits (537), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 105/155 (67%), Positives = 122/155 (78%), Gaps = 3/155 (1%)

Query: 11  GCLGCFIRPPVNTSASNLSKELGVPGRSAGKRSISEDFWTTSTCDMDNSAVQSQGSISSL 70
           GCLG F +PP+  +A    K L   G++A K S SEDFW TST DMDNSAVQSQGSISS 
Sbjct: 5   GCLGPFKKPPLIATADVPPKGLRKQGKAAKKPSTSEDFWITSTHDMDNSAVQSQGSISSA 64

Query: 71  GTNNLIPDTNGGSGSASAPSEFVNHGFLLWNQTRQRWIGNKKAENRTHQVREPKLNWNAT 130
              N   D +GGS +   P+EFVNHG +LWNQTRQ WIGNK+++N+T Q+REPKL+WNAT
Sbjct: 65  SITNQAADPHGGSCN---PTEFVNHGLILWNQTRQGWIGNKRSKNQTEQLREPKLSWNAT 121

Query: 131 YESLLGSNKPFPQPIPLSEMVDFLVDIWEQEGMYD 165
           YESLLGSNKPFPQ IPL+EMVDFLVDIWEQEG+YD
Sbjct: 122 YESLLGSNKPFPQHIPLAEMVDFLVDIWEQEGLYD 156

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357468213|ref|XP_003604391.1| hypothetical protein MTR_4g010330 [Medicago truncatula] gi|355505446|gb|AES86588.1| hypothetical protein MTR_4g010330 [Medicago truncatula]

 Score =  211 bits (536), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 106/166 (63%), Positives = 125/166 (75%), Gaps = 9/166 (5%)

Query: 3   LCHLQQSSGCLGCFIRPP---VNTSASNLSKELGVPGRSAGKRSISEDFWTTSTCDMDNS 59
           + H   SSGC+GC+ RP    V   ++ L+K+    G++  K S SEDFWTTST DMDNS
Sbjct: 115 ILHAYGSSGCVGCYKRPALVTVEVPSTGLTKQ----GKAVDKPSTSEDFWTTSTHDMDNS 170

Query: 60  AVQSQGSISSLGTNNLIPDTNGGSGSASAPSEFVNHGFLLWNQTRQRWIGNKKAENRTHQ 119
           AVQSQGSISS    N        + S++ PSEFVNHG +LWNQTRQRW+GNKK ENRT Q
Sbjct: 171 AVQSQGSISSTSLTN--QAVAAHASSSNNPSEFVNHGLILWNQTRQRWVGNKKPENRTQQ 228

Query: 120 VREPKLNWNATYESLLGSNKPFPQPIPLSEMVDFLVDIWEQEGMYD 165
           +REPKL+WNATYESLL SNKPF QPIPL+EMVDFLVDIWEQ+G+YD
Sbjct: 229 LREPKLSWNATYESLLTSNKPFRQPIPLAEMVDFLVDIWEQDGLYD 274

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224059178|ref|XP_002299754.1| predicted protein [Populus trichocarpa] gi|118485078|gb|ABK94402.1| unknown [Populus trichocarpa] gi|222847012|gb|EEE84559.1| predicted protein [Populus trichocarpa]

 Score =  211 bits (536), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 109/160 (68%), Positives = 122/160 (76%)

Query: 6   LQQSSGCLGCFIRPPVNTSASNLSKELGVPGRSAGKRSISEDFWTTSTCDMDNSAVQSQG 65
           +  SSGCLGC+ +P + TS    SK   V   +  K SISEDFWTTSTCDMD SAVQSQG
Sbjct: 1   MHGSSGCLGCYNKPTLITSVGEQSKGPKVKCETVKKPSISEDFWTTSTCDMDYSAVQSQG 60

Query: 66  SISSLGTNNLIPDTNGGSGSASAPSEFVNHGFLLWNQTRQRWIGNKKAENRTHQVREPKL 125
           SISS+   N   D +GGSGS +  SEFVNHG LLWNQTR  W+GNK++ N     +EPKL
Sbjct: 61  SISSISIANQTLDQHGGSGSINNVSEFVNHGLLLWNQTRHCWVGNKRSGNEEQLPQEPKL 120

Query: 126 NWNATYESLLGSNKPFPQPIPLSEMVDFLVDIWEQEGMYD 165
           NWNATYESLLGSNKPFPQPIPL+EMVDFLVDIWEQEGMYD
Sbjct: 121 NWNATYESLLGSNKPFPQPIPLTEMVDFLVDIWEQEGMYD 160

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388517837|gb|AFK46980.1| unknown [Lotus japonicus]

 Score =  210 bits (535), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 101/155 (65%), Positives = 117/155 (75%)

Query: 11  GCLGCFIRPPVNTSASNLSKELGVPGRSAGKRSISEDFWTTSTCDMDNSAVQSQGSISSL 70
           GC+GC+ RP + T+    ++ L   G +  K S SEDFWTTST DMDNSAVQSQGSISS 
Sbjct: 5   GCVGCYKRPTLVTTVDEPTQGLTTQGEAVKKHSTSEDFWTTSTHDMDNSAVQSQGSISSA 64

Query: 71  GTNNLIPDTNGGSGSASAPSEFVNHGFLLWNQTRQRWIGNKKAENRTHQVREPKLNWNAT 130
              N     +G S  +S P+EFVN G  LWNQTRQRW+G KK E RT Q+REPKL+WNAT
Sbjct: 65  SVTNQAVVPHGVSSKSSNPTEFVNQGLNLWNQTRQRWVGPKKPETRTQQLREPKLSWNAT 124

Query: 131 YESLLGSNKPFPQPIPLSEMVDFLVDIWEQEGMYD 165
           YESLLGSNKPF QPIPL+EMVDFLVDIWEQ+G+YD
Sbjct: 125 YESLLGSNKPFRQPIPLAEMVDFLVDIWEQDGLYD 159

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357468215|ref|XP_003604392.1| hypothetical protein MTR_4g010330 [Medicago truncatula] gi|355505447|gb|AES86589.1| hypothetical protein MTR_4g010330 [Medicago truncatula] gi|388496552|gb|AFK36342.1| unknown [Medicago truncatula]

 Score =  207 bits (528), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 103/158 (65%), Positives = 121/158 (76%), Gaps = 9/158 (5%)

Query: 11  GCLGCFIRPP---VNTSASNLSKELGVPGRSAGKRSISEDFWTTSTCDMDNSAVQSQGSI 67
           GC+GC+ RP    V   ++ L+K+    G++  K S SEDFWTTST DMDNSAVQSQGSI
Sbjct: 5   GCVGCYKRPALVTVEVPSTGLTKQ----GKAVDKPSTSEDFWTTSTHDMDNSAVQSQGSI 60

Query: 68  SSLGTNNLIPDTNGGSGSASAPSEFVNHGFLLWNQTRQRWIGNKKAENRTHQVREPKLNW 127
           SS    N        + S++ PSEFVNHG +LWNQTRQRW+GNKK ENRT Q+REPKL+W
Sbjct: 61  SSTSLTNQA--VAAHASSSNNPSEFVNHGLILWNQTRQRWVGNKKPENRTQQLREPKLSW 118

Query: 128 NATYESLLGSNKPFPQPIPLSEMVDFLVDIWEQEGMYD 165
           NATYESLL SNKPF QPIPL+EMVDFLVDIWEQ+G+YD
Sbjct: 119 NATYESLLTSNKPFRQPIPLAEMVDFLVDIWEQDGLYD 156

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449436148|ref|XP_004135856.1| PREDICTED: uncharacterized protein LOC101208775 isoform 1 [Cucumis sativus] gi|449491028|ref|XP_004158778.1| PREDICTED: uncharacterized LOC101208775 isoform 1 [Cucumis sativus]

 Score =  202 bits (513), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 100/156 (64%), Positives = 118/156 (75%), Gaps = 2/156 (1%)

Query: 10  SGCLGCFIRPPVNTSASNLSKELGVPGRSAGKRSISEDFWTTSTCDMDNSAVQSQGSISS 69
           SGCLGC+ +P + T  +  SK   +      K S+SEDFWTTST D+DNSA QSQGS+SS
Sbjct: 21  SGCLGCYTKPKLKTHLNEPSKGQQIQCHGLRKPSLSEDFWTTSTFDVDNSAGQSQGSMSS 80

Query: 70  LGTNNLIPDTNGGSGSASAPSEFVNHGFLLWNQTRQRWIGNKKAENRTHQVREPKLNWNA 129
           L T N + D +G SG+   PSEF+NHG LLWNQTRQRW GNK++E    Q +EPKL+WN 
Sbjct: 81  LSTINHMHDPHGSSGNVPNPSEFLNHGLLLWNQTRQRWTGNKRSEKP--QFQEPKLDWNV 138

Query: 130 TYESLLGSNKPFPQPIPLSEMVDFLVDIWEQEGMYD 165
           TYESLLGSNKPF QPIPL EMVDFLVD+WEQEG+YD
Sbjct: 139 TYESLLGSNKPFRQPIPLGEMVDFLVDVWEQEGLYD 174

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351724527|ref|NP_001235781.1| uncharacterized protein LOC100499770 [Glycine max] gi|255626433|gb|ACU13561.1| unknown [Glycine max]

 Score =  201 bits (510), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 103/170 (60%), Positives = 121/170 (71%), Gaps = 15/170 (8%)

Query: 11  GCLGCFIRPPVNTSASNLSKELGVPGRSAGKRSISEDFWTTSTCDMDNSAVQSQGSISSL 70
           GC+GC+ RP ++ +    SK L        K S SEDFWTTST DMDNSAVQSQGSISS 
Sbjct: 5   GCVGCYKRPSLSPTVDVPSKGLATQSNVVRKPSSSEDFWTTSTHDMDNSAVQSQGSISSA 64

Query: 71  G-TNNLIPDTNGGSGSASAPSEFVNHGFLLWNQTRQRWIGNKKAENRTHQVREPKL---- 125
             TN  +    G S S++ P+EFVNHG +LWNQTRQRW+GNKK EN+T Q++EPKL    
Sbjct: 65  SLTNQAVVSHAGSSKSSTNPTEFVNHGVILWNQTRQRWVGNKKPENQTQQLQEPKLRTYC 124

Query: 126 ----------NWNATYESLLGSNKPFPQPIPLSEMVDFLVDIWEQEGMYD 165
                     +WNATYESLLGSNKPF QPIPL+EMVDFLVDIWEQ+G+YD
Sbjct: 125 LCLAKNFWLCSWNATYESLLGSNKPFRQPIPLAEMVDFLVDIWEQDGLYD 174

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	165
TAIR|locus:2145442	169	AT5G25360 "AT5G25360" [Arabido	0.903	0.881	0.576	1.2e-44
TAIR|locus:2037878	154	AT1G15350 "AT1G15350" [Arabido	0.915	0.980	0.557	1.2e-40
TAIR|locus:2093292	162	AT3G15770 "AT3G15770" [Arabido	0.921	0.938	0.518	7.8e-39
TAIR|locus:4515103481	161	AT4G32342 "AT4G32342" [Arabido	0.884	0.906	0.466	1.3e-29
TAIR|locus:2142689	98	AT5G03440 "AT5G03440" [Arabido	0.515	0.867	0.449	2e-17
TAIR|locus:2082707	112	AT3G54880 "AT3G54880" [Arabido	0.581	0.857	0.387	2.5e-17

TAIR|locus:2145442 AT5G25360 "AT5G25360" [Arabidopsis thaliana (taxid:3702)]

 Score = 470 (170.5 bits), Expect = 1.2e-44, P = 1.2e-44
 Identities = 90/156 (57%), Positives = 112/156 (71%)

Query:    11 GCLGCFIRPPVNTSASNLSKELGVPGRSAGKRSISEDFWTTSTCDMDNSAVQSQGSISSL 70
             GC GC  +PP+  +    SK L + GR   K S+SEDFW+TSTC+MDNS +QSQ S+SS+
Sbjct:    20 GCFGCCNKPPLIVAVDEPSKGLRIQGRLVKKPSVSEDFWSTSTCEMDNSTLQSQRSMSSI 79

Query:    71 G-TNNLIPDTNGGSGSASAPSEFVNHGFLLWNQTRQRWIGNKKAENRTHQVREPKLNWNA 129
               TNN        S S S P+EFVNHG  LWNQTRQ+W+ N  ++ +  +VREP ++WNA
Sbjct:    80 SFTNN-----TSTSASTSNPTEFVNHGLNLWNQTRQQWLANGTSQKKA-KVREPTISWNA 133

Query:   130 TYESLLGSNKPFPQPIPLSEMVDFLVDIWEQEGMYD 165
             TYESLLG NK F +PIPL EMVDFLVD+WEQEG+YD
Sbjct:   134 TYESLLGMNKRFSRPIPLPEMVDFLVDVWEQEGLYD 169

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2037878 AT1G15350 "AT1G15350" [Arabidopsis thaliana (taxid:3702)]

 Score = 432 (157.1 bits), Expect = 1.2e-40, P = 1.2e-40
 Identities = 87/156 (55%), Positives = 107/156 (68%)

Query:    11 GCLGCFIRPPVNTSASNLSKELGVPGRSAGKRSISEDFWTTSTCDMDNSAVQSQGSISSL 70
             GC+GC+ R   +T+AS          R   K S+SEDFW+TST DMDN    SQGS+SS 
Sbjct:     3 GCVGCY-REHRSTAASLKDPPSNSIARPCKKPSVSEDFWSTSTVDMDNITFPSQGSLSS- 60

Query:    71 GTNNLIPDTNGGSGSASAPSEFVNHGFLLWNQTRQRWIGNKKAENRTHQVREPKLNWN-A 129
               +N   D+   + +++AP E+VN G LLWNQTR+RW+G  K  N     +  KLNWN A
Sbjct:    61 --SNQTFDSQSAARNSNAPPEYVNQGLLLWNQTRERWVGKDKPNNPVDHNQGAKLNWNTA 118

Query:   130 TYESLLGSNKPFPQPIPLSEMVDFLVDIWEQEGMYD 165
             TY+SLLGSNK FPQPIPL+EMVDFLVDIWEQEG+YD
Sbjct:   119 TYDSLLGSNKLFPQPIPLTEMVDFLVDIWEQEGLYD 154

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2093292 AT3G15770 "AT3G15770" [Arabidopsis thaliana (taxid:3702)]

 Score = 415 (151.1 bits), Expect = 7.8e-39, P = 7.8e-39
 Identities = 84/162 (51%), Positives = 111/162 (68%)

Query:    10 SGCLGCFIRPPVNTSAS---NLSKELGVPG--RSAGKRSI--SEDFWTTSTCDMDNSAVQ 62
             S CL CF +    TS     N +K++ V        K S+  SEDFWT +T DM+++A  
Sbjct:     3 SSCLACFDKSKAKTSVDVPLNGTKDVLVEEDWSELRKPSVVASEDFWTNTTLDMESNA-- 60

Query:    63 SQGSISSLGTNNLIPDTNGGSGSASAPSEFVNHGFLLWNQTRQRWIGNKKAENRTHQVRE 122
               GS+SS+ T NL  D+ G   S++ P+EFVNHG +LWNQTRQ+W+G+K++E+R    RE
Sbjct:    61 -HGSVSSISTTNLTIDSQGCGSSSNEPAEFVNHGLVLWNQTRQQWVGDKRSESRKSVGRE 119

Query:   123 PKLNWNATYESLLGSNKPFPQPIPLSEMVDFLVDIWEQEGMY 164
             P LN N TYESLLGSNK FP+PIPL EMV FLV++WE+EG+Y
Sbjct:   120 PILNENVTYESLLGSNKRFPRPIPLDEMVQFLVEVWEEEGLY 161

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:4515103481 AT4G32342 "AT4G32342" [Arabidopsis thaliana (taxid:3702)]

 Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
 Identities = 76/163 (46%), Positives = 95/163 (58%)

Query:     6 LQQSSGCLGCFIRPP-VNTSASNLSKELGVPGRSAGKRSIS-EDFWTTSTCDMD-NSAVQ 62
             L  S  C GC  R   +       SK L + G+   K S S +DFW+TSTCDMD N  +Q
Sbjct:    11 LINSINCFGCCNRERRLVVEVDEPSKGLKIQGKIVKKDSASSDDFWSTSTCDMDHNITIQ 70

Query:    63 SQGSISSLGTNNLIPDTNGGSGSASAPSEFVNHGFLLWNQTRQRWIGNKKAENRTH-QVR 121
             SQ S          P       S S  +EFVNHG +LWN TRQ+W   ++   R    V 
Sbjct:    71 SQSSNPPFD-----PQC-----STSNSTEFVNHGLILWNHTRQQW---RECLTRQQCLVP 117

Query:   122 EPKLNWNATYESLLGSNKPFPQPIPLSEMVDFLVDIWEQEGMY 164
             EP ++WN+TY+SLL +NK FPQPIPL EMV FLVD+WE+EG+Y
Sbjct:   118 EPAISWNSTYDSLLSTNKLFPQPIPLKEMVHFLVDVWEEEGLY 160

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2142689 AT5G03440 "AT5G03440" [Arabidopsis thaliana (taxid:3702)]

 Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 40/89 (44%), Positives = 59/89 (66%)

Query:    79 TNGGSGSASAPSE-FVNHGFLLWNQTRQRWIGNKKAENRTHQVR-EPKLNWNATYESLLG 136
             +N  +    +  E FVNH  + W + R++W+G+    NRT ++  EP + +NATYE LL 
Sbjct:    12 SNSSNDKEKSSEEIFVNHAEIAWQEMRKKWVGDPS--NRTSEMPDEPVIGFNATYEDLLT 69

Query:   137 SNKPFPQPIPLSEMVDFLVDIWEQEGMYD 165
             SN PF +PIPL+EMVDFL DIW  +G+++
Sbjct:    70 SNTPFNKPIPLAEMVDFLFDIWHGDGLFE 98

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2082707 AT3G54880 "AT3G54880" [Arabidopsis thaliana (taxid:3702)]

 Score = 212 (79.7 bits), Expect = 2.5e-17, P = 2.5e-17
 Identities = 38/98 (38%), Positives = 62/98 (63%)

Query:    69 SLGTNNLIPDTNGGSGSASAPS-EFVNHGFLLWNQTRQRWIGNKKAENRTHQVREPKLNW 127
             +L  + L+ D      + S  +   VNHG  +W + R++W+G++  + R +  ++  ++W
Sbjct:    16 TLELSKLVKDEKSSVKTNSENTLTLVNHGAKMWQENREKWVGDQSRQ-RKNTAKDQIISW 74

Query:   128 NATYESLLGSNKPFPQPIPLSEMVDFLVDIWEQEGMYD 165
             + TYE LL +++PF + IPL EMVDFLVDIW  EG+YD
Sbjct:    75 STTYEDLLSTHEPFSESIPLPEMVDFLVDIWYDEGLYD 112


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.314   0.130   0.405    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      165       165   0.00093  107 3  11 23  0.44    32
                                                     30  0.45    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  605 (64 KB)
  Total size of DFA:  177 KB (2102 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  18.42u 0.19s 18.61t   Elapsed:  00:00:01
  Total cpu time:  18.42u 0.19s 18.61t   Elapsed:  00:00:01
  Start:  Fri May 10 13:04:48 2013   End:  Fri May 10 13:04:49 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pm.C_LG_I0570 SubName- Full=Putative uncharacterized protein; (161 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	165
pfam13259	114	pfam13259, DUF4050, Protein of unknown function (D	3e-50

>gnl|CDD|222012 pfam13259, DUF4050, Protein of unknown function (DUF4050)

 Score =  156 bits (397), Expect = 3e-50
 Identities = 54/119 (45%), Positives = 71/119 (59%), Gaps = 7/119 (5%)

Query: 49  WTTSTCDMDNSAVQSQGSISSLGTNNLIPDTNGGSGSASAPSEFVNHGFLLWNQTRQRWI 108
           W+TS  D D+S   SQ SISS  ++           S+  P EFVNHG  LW + R  W 
Sbjct: 1   WSTSPYDFDSSDAVSQRSISSQSSD-----RRKRRKSSEEPEEFVNHGLRLWEERRDAWT 55

Query: 109 GNKKAENRTHQVRE--PKLNWNATYESLLGSNKPFPQPIPLSEMVDFLVDIWEQEGMYD 165
           G +K+   ++ +RE  P L++NA YE L+G NKP  QPI LS+MV FLV  WEQEG++ 
Sbjct: 56  GARKSNEESNPIRESIPPLSYNAIYEKLVGQNKPLKQPINLSDMVKFLVAGWEQEGLWP 114

This family of proteins is functionally uncharacterized. This family of proteins is found in eukaryotes. Proteins in this family are typically between 109 and 173 amino acids in length. There are two conserved sequence motifs: IPL and FLVD. Length = 114

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	165
PF13259	122	DUF4050: Protein of unknown function (DUF4050)	100.0

>PF13259 DUF4050: Protein of unknown function (DUF4050)

Probab=100.00  E-value=4.6e-40  Score=251.81  Aligned_cols=113  Identities=54%  Similarity=0.946  Sum_probs=99.1

Q ss_pred             cccccccccCcccccccccccCCCCCCCCCCCCCCCCCCCCCccchHHHHHHHHHHHhhhcCCCCCc-------cccccC
Q 031137           49 WTTSTCDMDNSAVQSQGSISSLGTNNLIPDTNGGSGSASAPSEFVNHGFLLWNQTRQRWIGNKKAEN-------RTHQVR  121 (165)
Q Consensus        49 WSsSt~eMdns~~qSq~sisSis~~n~~~d~~~~~~s~~~~~~FVNhGl~~W~q~R~qWvg~~~s~~-------~~~~~r  121 (165)
                      ||||+++|||+++|+|+++++   .++..+.+..... ...++||||||++|+++|++|||++++..       +.+..+
T Consensus         1 ~s~s~~~~d~~~~~~~~~~s~---~~~~~~~~~~~~~-~~~~~~~N~Gl~lW~~rR~~W~~~~~~~~~~~~~l~~~~~~r   76 (122)
T PF13259_consen    1 WSSSPFRFDNSDAQSQRSISS---TNSSSDCSKRRKS-SEEEEFVNHGLILWEQRRQQWTGPKKSNKIIEPRLQQSNSIR   76 (122)
T ss_pred             CCCCcccCcChhhhhhhcccc---ccchhhhhhhhcc-ccCccceeHHHHHHHHHHHHHcCCCCcccccccccccccccc
Confidence            999999999999999999954   4455555443333 34499999999999999999999988774       566788


Q ss_pred             C--CeeecccchhhccCCCCCCCCCCChHHHHHHHHHHHhhcCCCC
Q 031137          122 E--PKLNWNATYESLLGSNKPFPQPIPLSEMVDFLVDIWEQEGMYD  165 (165)
Q Consensus       122 e--p~iswnatye~LLgsn~pF~qPIPL~EMVdfLVDiWE~EGLyd  165 (165)
                      +  |.++|++|||+||++++||++||||+|||+||||+|++||+||
T Consensus        77 ~~Ip~~~y~~iY~~Lv~~~~pf~~PI~L~dmv~~Lv~gW~~eg~w~  122 (122)
T PF13259_consen   77 ESIPPISYPAIYEKLVGSNKPFKQPIPLSDMVDFLVDGWEEEGLWP  122 (122)
T ss_pred             cccchhhHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHhhcCCccC
Confidence            8  9999999999999999999999999999999999999999997

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00