Citrus Sinensis ID: 031159

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160----
Protein Sequence
MIRLTLTLVLVIGILSSTSQSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTGVQAKDWSNVAKKGSVDVMELELKKLYDTVSSIHQEMFYLRER
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHcEEEEEEEEEcccccEEEEEcccccEEEEEEEEEccccccccccccEEEEEEEcccccEEEEEEEccccEEEEEEEEcccEEEEEEEcccccccEEEEEEEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHcEEEEEccccccEEEEHHccccEEEEEEEEEEccccccccccccEEEEEEEcccccEEEEcccccccEEEEEEcccccEEEEEEEcccccccEEEEEEEEEcccEcccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MIRLTLTLVLVIGILSSTSQSLRFEIQSAHTKCIAediksnsmtvgkynvvnpndghplpeshklTVRVTsaygnsyhyadrvdsgqfaftaaEAGDYMACFwavdhspqttvtidfdwrtgvqakdwsnvakkgsvDVMELELKKLYDTVSSIHQEMFYLRER
Flexible Loop (DISEMBL)
MIRLTLTLVLVIGILSSTSQSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTgvqakdwsnvakkgsvdVMELELKKLYDTVSSIHQEMFYLRER
Low Complexity Region (SEG)
MIRltltlvlvigilssTSQSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTGVQAKDWSNVAKKGSVDVMELELKKLYDTVSSIHQEMFYLRER
Disordered region (IsUnstruct)
**RLTLTLVLVIGILSSTSQSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVN**********HKLTVRVTSAYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTGVQAKDWSNVAKKGSVDVMELELKKLYDTVSSIHQEMFYL***
Disordered Region (DISOPRED)
**RLTLTLVLVIGILSSTSQSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYA*RVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTGVQ***************MELELKKLYDTVSSIHQEMFYLRE*
Disordered Region (DISEMBL)
MIRLTLTLVLVIGILSSTSQSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTGVQAKDWSNVAKKGSVDVMELELKKLYDTVSSIHQEMFYLRER
Disordered Region (DISPRO)
*IRLTLTLVLVIGILSSTSQSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTGVQAKDWSNVAKKGSVDVMELELKKLYDTVSSIHQEMFYLRER
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MIRLTLTLVLVIGILSSTSQSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTGVQAKDWSNVAKKGSVDVMELELKKLYDTVSSIHQEMFYLRER
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	164	2.2.26 [Sep-21-2011]
Q9LQY3	214	Transmembrane emp24 domai	yes	no	0.963	0.738	0.683	1e-65
Q8VY92	214	Transmembrane emp24 domai	no	no	0.963	0.738	0.639	5e-61
Q8GYG1	212	Transmembrane emp24 domai	no	no	0.987	0.764	0.592	5e-59
O81045	213	Transmembrane emp24 domai	no	no	0.878	0.676	0.586	4e-50
Q9LJV9	225	Transmembrane emp24 domai	no	no	0.884	0.644	0.524	3e-46
Q6IDL4	217	Transmembrane emp24 domai	no	no	0.932	0.705	0.386	2e-31
Q8RWM6	216	Transmembrane emp24 domai	no	no	0.798	0.606	0.407	1e-26
Q9FVU0	212	Transmembrane emp24 domai	no	no	0.975	0.754	0.363	7e-26
F4J4Y0	217	Transmembrane emp24 domai	no	no	0.908	0.686	0.320	1e-18
Q9D1D4	219	Transmembrane emp24 domai	yes	no	0.926	0.694	0.235	4e-10

>sp|Q9LQY3|P24D9_ARATH Transmembrane emp24 domain-containing protein p24delta9 OS=Arabidopsis thaliana GN=At1g26690 PE=2 SV=1

 Score =  248 bits (633), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 108/158 (68%), Positives = 137/158 (86%)

Query: 7   TLVLVIGILSSTSQSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLT 66
           T++L + I S  SQSL FE+QS  TKCI+EDIKSNSMTVGKY VVNPN+ HP P+SHK++
Sbjct: 10  TILLFLAISSQVSQSLHFELQSGRTKCISEDIKSNSMTVGKYTVVNPNEAHPSPQSHKIS 69

Query: 67  VRVTSAYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTGVQAK 126
           +RVTS+YGN+YH+A+ V+SGQFAFTA E+GDYMAC+ AVDH P+ T++IDFDWRTGVQ+K
Sbjct: 70  IRVTSSYGNTYHHAEDVESGQFAFTAVESGDYMACYTAVDHKPEVTLSIDFDWRTGVQSK 129

Query: 127 DWSNVAKKGSVDVMELELKKLYDTVSSIHQEMFYLRER 164
            WS+VAKK  V+VME ++K+L +TV+SIH+EMFYLRER
Sbjct: 130 SWSSVAKKSQVEVMEFDVKRLIETVNSIHEEMFYLRER 167

Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8VY92|P24DA_ARATH Transmembrane emp24 domain-containing protein p24delta10 OS=Arabidopsis thaliana GN=At1g69460 PE=1 SV=1

 Score =  233 bits (593), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 101/158 (63%), Positives = 134/158 (84%)

Query: 7   TLVLVIGILSSTSQSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLT 66
           T++L++ I S  S SL F++ S  TKCIAEDIKSNSMTVGKYN+ NP++G  LP++HK++
Sbjct: 10  TMLLILAIWSPISHSLHFDLHSGRTKCIAEDIKSNSMTVGKYNIDNPHEGQALPQTHKIS 69

Query: 67  VRVTSAYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTGVQAK 126
           V+VTS  GN+YH+A++VDSGQFAF+A EAGDYMACF AVDH P+ +++IDF+W+TGVQ+K
Sbjct: 70  VKVTSNSGNNYHHAEQVDSGQFAFSAVEAGDYMACFTAVDHKPEVSLSIDFEWKTGVQSK 129

Query: 127 DWSNVAKKGSVDVMELELKKLYDTVSSIHQEMFYLRER 164
            W+NVAKK  V+VME E+K L DTV+SIH+EM+YLR+R
Sbjct: 130 SWANVAKKSQVEVMEFEVKSLLDTVNSIHEEMYYLRDR 167

Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GYG1|P24D7_ARATH Transmembrane emp24 domain-containing protein p24delta7 OS=Arabidopsis thaliana GN=At1g14010 PE=2 SV=1

 Score =  226 bits (576), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 96/162 (59%), Positives = 131/162 (80%)

Query: 3   RLTLTLVLVIGILSSTSQSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPES 62
           R +  ++L++ ILS  + S+R+E+ S HTKCI+E+I +N+MT+GKY+++NP++ HPLP S
Sbjct: 4   RRSSIVLLILSILSPVTLSIRYELLSGHTKCISEEIHANAMTIGKYSIINPHEDHPLPSS 63

Query: 63  HKLTVRVTSAYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTG 122
           HK+TVRVTS  G +YH +D V+SGQF+F A E GDY++CF AVDH P+TT+ IDFDWRTG
Sbjct: 64  HKVTVRVTSPQGTAYHESDGVESGQFSFVAVETGDYISCFSAVDHKPETTLIIDFDWRTG 123

Query: 123 VQAKDWSNVAKKGSVDVMELELKKLYDTVSSIHQEMFYLRER 164
           +  KDWSNVAKK  V+ ME E+KKL++TV+ IH EMFYLR+R
Sbjct: 124 IHTKDWSNVAKKSQVETMEFEVKKLFETVNGIHDEMFYLRDR 165

Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side.

Arabidopsis thaliana (taxid: 3702)

>sp|O81045|P24D8_ARATH Transmembrane emp24 domain-containing protein p24delta8 OS=Arabidopsis thaliana GN=At2g03290 PE=1 SV=1

 Score =  197 bits (500), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 85/145 (58%), Positives = 117/145 (80%), Gaps = 1/145 (0%)

Query: 21  SLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPN-DGHPLPESHKLTVRVTSAYGNSYHY 79
           S+R+E++S+ TKCI E+I  N+M++GKY +VNPN D HPLP+SHK+ V+V    G + H 
Sbjct: 22  SMRYELKSSKTKCIGEEIHENAMSIGKYFIVNPNEDNHPLPDSHKIIVKVMPPQGKNLHE 81

Query: 80  ADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTGVQAKDWSNVAKKGSVDV 139
           AD+V++GQF+FTA E G Y+AC  A+D+ P+TT+TIDFDW+TGV +K+W+NVAKK  VD+
Sbjct: 82  ADKVEAGQFSFTAYENGSYVACITAIDYKPETTLTIDFDWKTGVHSKEWTNVAKKSQVDM 141

Query: 140 MELELKKLYDTVSSIHQEMFYLRER 164
           ME ++K L DTV SIH+EM+YLRER
Sbjct: 142 MEYQVKTLMDTVISIHEEMYYLRER 166

Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side (By similarity). On Golgi membranes, acts as primary receptor for ARF1-GDP which is involved in COPI-vesicle formation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LJV9|P24DB_ARATH Transmembrane emp24 domain-containing protein p24delta11 OS=Arabidopsis thaliana GN=At3g29070 PE=2 SV=1

 Score =  183 bits (465), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 76/145 (52%), Positives = 111/145 (76%)

Query: 20  QSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHY 79
           +S+R +++S +TKCI++DIK+N MTVG Y++VNPN+GH LP SHKL V V+S  G S+H+
Sbjct: 34  ESMRLDMESGNTKCISDDIKTNYMTVGTYSIVNPNEGHHLPPSHKLFVTVSSPKGKSHHH 93

Query: 80  ADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTGVQAKDWSNVAKKGSVDV 139
           A+ V+SG+F FTA E GDYM CF A  + P     +DF+W++GV+AKDW+ +AK+G + +
Sbjct: 94  AENVESGKFVFTAEETGDYMTCFVAPGYRPTAKFAVDFEWKSGVEAKDWTTIAKRGQITM 153

Query: 140 MELELKKLYDTVSSIHQEMFYLRER 164
           +E+E++KL D   +IH+EMF L ER
Sbjct: 154 LEVEVRKLLDVTETIHEEMFQLIER 178

Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6IDL4|P24D3_ARATH Transmembrane emp24 domain-containing protein p24delta3 OS=Arabidopsis thaliana GN=At1g09580 PE=1 SV=1

 Score =  134 bits (338), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 61/158 (38%), Positives = 104/158 (65%), Gaps = 5/158 (3%)

Query: 8   LVLVIGILSSTSQSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTV 67
           L+ ++ ++    +++  ++    TKC++E+I+SN + +  Y +++  D   +P    ++V
Sbjct: 17  LLFLVPVMIPVGEAVWLDVPPTGTKCVSEEIQSNVVVLADYLIIS-EDHEVMP---TISV 72

Query: 68  RVTSAYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAVDHS-PQTTVTIDFDWRTGVQAK 126
           +VTS YGN+ H  + V  GQFAFT  E+G+Y+ACFWA + S     V+I+ DWRTG+ AK
Sbjct: 73  KVTSPYGNNLHNMENVTHGQFAFTTQESGNYLACFWADEKSHGNKNVSINIDWRTGIAAK 132

Query: 127 DWSNVAKKGSVDVMELELKKLYDTVSSIHQEMFYLRER 164
           DW+++AKK  ++ +ELE++KL   V +IH+ + YLR R
Sbjct: 133 DWASIAKKEKIEGVELEIRKLEGAVEAIHENILYLRNR 170

Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8RWM6|P24D5_ARATH Transmembrane emp24 domain-containing protein p24delta5 OS=Arabidopsis thaliana GN=At1g21900 PE=1 SV=1

 Score =  118 bits (296), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 55/135 (40%), Positives = 88/135 (65%), Gaps = 4/135 (2%)

Query: 31  TKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYADRVDSGQFAF 90
           TKC++E+I+SN + +  Y VV+ ++    P    ++ +VTS YGN+ H+ + V  GQFAF
Sbjct: 38  TKCVSEEIQSNVVVLADYYVVDEHNPENTP---AVSSKVTSPYGNNLHHQENVTHGQFAF 94

Query: 91  TAAEAGDYMACFWA-VDHSPQTTVTIDFDWRTGVQAKDWSNVAKKGSVDVMELELKKLYD 149
           T  EAG+Y+ACFW    H     +T+  DW+ G+ AKDW +VAKK  ++ +EL+L++L  
Sbjct: 95  TTQEAGNYLACFWIDSSHHLANPITLGVDWKMGIAAKDWDSVAKKEKIEGVELQLRRLEG 154

Query: 150 TVSSIHQEMFYLRER 164
            V SI + + Y+++R
Sbjct: 155 LVLSIRENLNYIKDR 169

Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side (By similarity). Interacts with p24beta2 at endoplasmic reticulum export sites for endoplasmic reticulum exit and coupled transport to the Golgi apparatus. Once in the Golgi, interacts very efficiently with the COPI machinery for retrograde transport back to the endoplasmic reticulum.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FVU0|P24D4_ARATH Transmembrane emp24 domain-containing protein p24delta4 OS=Arabidopsis thaliana GN=At1g57620 PE=1 SV=1

 Score =  116 bits (290), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 60/165 (36%), Positives = 100/165 (60%), Gaps = 5/165 (3%)

Query: 1   MIRLTLTLVLVIGILSSTSQSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLP 60
           MI  T+ L  +I  LS   +++   +    +KC++E+I+SN + +  Y V++  + H + 
Sbjct: 5   MIPTTILLSALIFSLSPICEAVWLTVPHTGSKCVSEEIQSNVIVLADYLVIS--EEHSIF 62

Query: 61  ESHKLTVRVTSAYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAVDHS-PQTTVTIDFDW 119
            +  ++V+VT+ YG   H+ +   +GQFAFT  E+G Y+ACF A   S      +I+ DW
Sbjct: 63  PT--VSVKVTAPYGTVLHHRENTTNGQFAFTTQESGTYLACFEADAKSHGNKDFSINIDW 120

Query: 120 RTGVQAKDWSNVAKKGSVDVMELELKKLYDTVSSIHQEMFYLRER 164
           +TG+ AKDW ++A+K  ++ +ELE KKL   V +IH+ + YLR R
Sbjct: 121 KTGIAAKDWDSIARKEKIEGVELEFKKLEGAVEAIHENLIYLRNR 165

Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side.

Arabidopsis thaliana (taxid: 3702)

>sp|F4J4Y0|P24D6_ARATH Transmembrane emp24 domain-containing protein p24delta6 OS=Arabidopsis thaliana GN=At3g10780 PE=1 SV=1

 Score = 92.0 bits (227), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 50/156 (32%), Positives = 84/156 (53%), Gaps = 7/156 (4%)

Query: 13  GILSSTSQSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSA 72
           G L    +++   +  +  +C+ E+I++N + V  Y  ++       P    L VRVTS 
Sbjct: 18  GSLFPGVEAIWLTVPESGERCVYEEIQANVVVVLDYICIDDAFTQLGP---TLDVRVTSP 74

Query: 73  YGNSYHYADRVDSGQFAFTAAEAGDYMACFWA----VDHSPQTTVTIDFDWRTGVQAKDW 128
           YG   +    V  GQ AFT +E+G ++AC         HS  ++V +  DW+ G++AKDW
Sbjct: 75  YGKELYKIANVTHGQAAFTTSESGTFLACLAMHHDQSHHSVNSSVIVSLDWKMGIRAKDW 134

Query: 129 SNVAKKGSVDVMELELKKLYDTVSSIHQEMFYLRER 164
            +VAKK  ++ +ELE+++  +  S+I   + YLR R
Sbjct: 135 DSVAKKEKIEGVELEIRRSTEYASAIRANILYLRIR 170

Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9D1D4|TMEDA_MOUSE Transmembrane emp24 domain-containing protein 10 OS=Mus musculus GN=Tmed10 PE=2 SV=1

 Score = 63.9 bits (154), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 77/157 (49%), Gaps = 5/157 (3%)

Query: 8   LVLVIGILSSTSQSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTV 67
            +L++G   S+   + F +     KC+ E+I  + +  G Y + + + G     +H   +
Sbjct: 20  FLLLLG--PSSVLGISFHLPVNSRKCLREEIHKDLLVTGAYEITDQSGGAGGLRTH---L 74

Query: 68  RVTSAYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTGVQAKD 127
           ++T + G+  +  +    G+FAFT  +   +  CF +          +  D + GV+AK+
Sbjct: 75  KITDSAGHILYAKEDATKGKFAFTTEDYDMFEVCFESKGTGRIPDQLVILDMKHGVEAKN 134

Query: 128 WSNVAKKGSVDVMELELKKLYDTVSSIHQEMFYLRER 164
           +  +AK   +  +E+EL++L D   SI  +  Y+++R
Sbjct: 135 YEEIAKVEKLKPLEVELRRLEDLSESIVNDFAYMKKR 171

Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side. In COPII vesicle-mediated anterograde transport involved in the transport of GPI-anchored proteins and proposed to act togther with TMED2 as their cargo receptor; the function specifically implies SEC24C and SEC24D of the COPII vesicle coat and lipid raft-like microdomains of the ER. Recognizes GPI anchors structural remodeled in the ER by PGAP1 and MPPE1. In COPI vesicle-mediated retrograde transport involved in the biogenesis of COPI vesicles and vesicle coat recruitment. On Golgi membranes, acts as primary receptor for ARF1-GDP which is involved in COPI-vesicle formation. Increases coatomer-dependent GTPase-activating activity of ARFGAP2. Involved in trafficking of G protein-coupled receptors (GPCRs). Regulates F2LR1, OPRM1 and P2RY4 exocytic trafficking from the Golgi to the plasma membrane thus contributing to receptor resensitization. Involved in trafficking of amyloid beta A4 protein and soluble APP-beta release (independent of modulation of gamma-secretase activity). As part of the presenilin-dependent gamma-secretase complex regulates gamma-cleavages of the amyloid beta A4 protein to yield amyloid-beta 40 (Abeta40). Involved in organization of the Golgi apparatus.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	164
224098928	216	predicted protein [Populus trichocarpa]	0.987	0.75	0.769	8e-73
225462930	218	PREDICTED: transmembrane emp24 domain-co	1.0	0.752	0.75	9e-71
118489897	214	unknown [Populus trichocarpa x Populus d	1.0	0.766	0.742	5e-70
363807104	221	uncharacterized protein LOC100817584 pre	0.951	0.705	0.756	6e-70
255562952	215	Transmembrane emp24 domain-containing pr	0.939	0.716	0.759	1e-69
224112183	214	predicted protein [Populus trichocarpa]	1.0	0.766	0.730	7e-69
388500600	218	unknown [Lotus japonicus]	0.890	0.669	0.780	3e-68
388490748	218	unknown [Lotus japonicus]	0.890	0.669	0.780	6e-68
351726337	220	uncharacterized protein LOC100499866 pre	0.890	0.663	0.780	7e-68
147853846	202	hypothetical protein VITISV_026964 [Viti	0.890	0.722	0.801	2e-67

>gi|224098928|ref|XP_002311321.1| predicted protein [Populus trichocarpa] gi|118483721|gb|ABK93754.1| unknown [Populus trichocarpa] gi|222851141|gb|EEE88688.1| predicted protein [Populus trichocarpa]

 Score =  278 bits (710), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 127/165 (76%), Positives = 148/165 (89%), Gaps = 3/165 (1%)

Query: 3   RLTLTLVL---VIGILSSTSQSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPL 59
           RL L L++   VIG+LSS S+SLRFE++S HTKCI+EDIKSNSMTVGKY++VNP+D  PL
Sbjct: 5   RLNLYLLVIMTVIGLLSSPSKSLRFELESGHTKCISEDIKSNSMTVGKYSIVNPHDSQPL 64

Query: 60  PESHKLTVRVTSAYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDW 119
           PESHKLTVRVTS+YGNSYHY++RV+SGQFAFTAAEAGDYMACFWA DH P  T+++DFDW
Sbjct: 65  PESHKLTVRVTSSYGNSYHYSERVESGQFAFTAAEAGDYMACFWAADHKPTVTLSVDFDW 124

Query: 120 RTGVQAKDWSNVAKKGSVDVMELELKKLYDTVSSIHQEMFYLRER 164
           +TGV AKDWSNVAKKGSVDVME+ELKK+YDTV SI +EM YLRER
Sbjct: 125 KTGVAAKDWSNVAKKGSVDVMEMELKKMYDTVISIQEEMNYLRER 169

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225462930|ref|XP_002267401.1| PREDICTED: transmembrane emp24 domain-containing protein bai-like [Vitis vinifera]

 Score =  271 bits (692), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 123/164 (75%), Positives = 142/164 (86%)

Query: 1   MIRLTLTLVLVIGILSSTSQSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLP 60
           MI +   ++L +G L    QS+RFE++S HTKCIAEDIK++SMTVGKY+VVNPNDG+P+P
Sbjct: 8   MIGVVAGVILNLGFLLGGVQSIRFELESGHTKCIAEDIKADSMTVGKYSVVNPNDGYPIP 67

Query: 61  ESHKLTVRVTSAYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWR 120
           +SHK+TVRVTSAYGN+YHYAD VDSGQFAF AAEAGDYMACFW V H P  T+TID DW+
Sbjct: 68  DSHKVTVRVTSAYGNNYHYADLVDSGQFAFPAAEAGDYMACFWVVYHKPPLTLTIDLDWK 127

Query: 121 TGVQAKDWSNVAKKGSVDVMELELKKLYDTVSSIHQEMFYLRER 164
           TGV AKDWSNVAKKG VDVMELELKKLYDTV+SIH+EMFYLR R
Sbjct: 128 TGVAAKDWSNVAKKGQVDVMELELKKLYDTVTSIHEEMFYLRGR 171

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118489897|gb|ABK96746.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  268 bits (686), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 124/167 (74%), Positives = 146/167 (87%), Gaps = 3/167 (1%)

Query: 1   MIRLTLTLVL---VIGILSSTSQSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGH 57
           M R  L L+L   VI ILSSTS+S+RFE+QS +TKCIAEDIKSNSMTVGKY++VNP+DG 
Sbjct: 1   MSRFNLYLLLITTVIAILSSTSKSIRFELQSGNTKCIAEDIKSNSMTVGKYSIVNPHDGQ 60

Query: 58  PLPESHKLTVRVTSAYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDF 117
           PLP S+KLTVRVTS+YGN+YH+++ V+SGQFAFTA+EAGDYMACFWA DH P  T+ IDF
Sbjct: 61  PLPASYKLTVRVTSSYGNNYHHSELVESGQFAFTASEAGDYMACFWAADHKPAVTLNIDF 120

Query: 118 DWRTGVQAKDWSNVAKKGSVDVMELELKKLYDTVSSIHQEMFYLRER 164
           DW+TGV AKDW+NVAKKGSVDVMELELKK+YDTV S+ +EM YLRER
Sbjct: 121 DWKTGVAAKDWTNVAKKGSVDVMELELKKMYDTVISVQEEMNYLRER 167

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807104|ref|NP_001242591.1| uncharacterized protein LOC100817584 precursor [Glycine max] gi|255641664|gb|ACU21104.1| unknown [Glycine max]

 Score =  268 bits (685), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 118/156 (75%), Positives = 139/156 (89%)

Query: 9   VLVIGILSSTSQSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVR 68
           +L++ + SS+S+SLRFE+QS HTKCI+EDIKSNSMTVGKY +VN N+G PLP+SH++TVR
Sbjct: 19  LLILVLFSSSSESLRFELQSGHTKCISEDIKSNSMTVGKYQIVNSNEGQPLPDSHRVTVR 78

Query: 69  VTSAYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTGVQAKDW 128
           VTS+YGN+YHY DRV +G FAF A EAGDYM CFWAVDH+P  T+T+DFDW+TGV AKDW
Sbjct: 79  VTSSYGNNYHYGDRVQTGHFAFAAVEAGDYMTCFWAVDHNPVETLTVDFDWKTGVAAKDW 138

Query: 129 SNVAKKGSVDVMELELKKLYDTVSSIHQEMFYLRER 164
           SNVAKKG VDVMELELKKL DTVSSIH+EMFYLRER
Sbjct: 139 SNVAKKGQVDVMELELKKLQDTVSSIHEEMFYLRER 174

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255562952|ref|XP_002522481.1| Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis] gi|223538366|gb|EEF39973.1| Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]

 Score =  266 bits (681), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 117/154 (75%), Positives = 139/154 (90%)

Query: 11  VIGILSSTSQSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVT 70
           ++G+LSST++SLRF++QS  TKCIAEDI+SN+MTVGKY+VVNPN+G PLP +H LTVRVT
Sbjct: 15  IVGLLSSTTESLRFDLQSGQTKCIAEDIQSNAMTVGKYSVVNPNEGQPLPTTHSLTVRVT 74

Query: 71  SAYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTGVQAKDWSN 130
           S+YGNSYHYA+ V SGQFAFTAAEAGDYM CFWA DH PQ T+T+DFDW+TGV AKDW+N
Sbjct: 75  SSYGNSYHYAEHVPSGQFAFTAAEAGDYMTCFWAADHKPQVTLTVDFDWKTGVAAKDWTN 134

Query: 131 VAKKGSVDVMELELKKLYDTVSSIHQEMFYLRER 164
           VAKKGS+DVMELELKKL+DTV SI +EM+ LRER
Sbjct: 135 VAKKGSIDVMELELKKLHDTVISIQEEMYSLRER 168

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224112183|ref|XP_002316111.1| predicted protein [Populus trichocarpa] gi|224112187|ref|XP_002316113.1| predicted protein [Populus trichocarpa] gi|118482364|gb|ABK93105.1| unknown [Populus trichocarpa] gi|222865151|gb|EEF02282.1| predicted protein [Populus trichocarpa] gi|222865153|gb|EEF02284.1| predicted protein [Populus trichocarpa]

 Score =  265 bits (676), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 122/167 (73%), Positives = 146/167 (87%), Gaps = 3/167 (1%)

Query: 1   MIRLTLTLVL---VIGILSSTSQSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGH 57
           M R  L L+L   VI ILSSTS+S+RFE++S +TKCIAEDIKSNSMTVGKY++VNP+DG 
Sbjct: 1   MSRFNLYLLLITTVIAILSSTSKSIRFELESGNTKCIAEDIKSNSMTVGKYSIVNPHDGQ 60

Query: 58  PLPESHKLTVRVTSAYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDF 117
           PLP+S+KLTVRVTS+ GN+YH+++ V+SGQFAFTA+EAGDYMACFWA DH P  T+ IDF
Sbjct: 61  PLPDSYKLTVRVTSSSGNNYHHSELVESGQFAFTASEAGDYMACFWAADHKPAVTLNIDF 120

Query: 118 DWRTGVQAKDWSNVAKKGSVDVMELELKKLYDTVSSIHQEMFYLRER 164
           DW+TGV AKDW+NVAKKGSVDVMELELKK+YDTV S+ +EM YLRER
Sbjct: 121 DWKTGVAAKDWTNVAKKGSVDVMELELKKMYDTVISVQEEMNYLRER 167

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388500600|gb|AFK38366.1| unknown [Lotus japonicus]

 Score =  262 bits (670), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 114/146 (78%), Positives = 135/146 (92%)

Query: 19  SQSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYH 78
           ++SLRFE+QS HTKCI+EDIKSNSMTVGKY+++NP +G PLP++H++TVRVTS+YGN+YH
Sbjct: 26  TESLRFELQSGHTKCISEDIKSNSMTVGKYSIINPTEGFPLPDTHRVTVRVTSSYGNNYH 85

Query: 79  YADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTGVQAKDWSNVAKKGSVD 138
           Y DRV+SGQFAF AAEAGDYM+CFWA DH+P  T+TIDF+W+TGV AKDWSNVAKKG VD
Sbjct: 86  YGDRVESGQFAFVAAEAGDYMSCFWAADHTPAITLTIDFEWKTGVAAKDWSNVAKKGQVD 145

Query: 139 VMELELKKLYDTVSSIHQEMFYLRER 164
           VMELELKKL DTVSSIH+EMFYLRER
Sbjct: 146 VMELELKKLQDTVSSIHEEMFYLRER 171

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388490748|gb|AFK33440.1| unknown [Lotus japonicus]

 Score =  261 bits (668), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 114/146 (78%), Positives = 135/146 (92%)

Query: 19  SQSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYH 78
           ++SLRFE+QS HTKCI+EDIKSNSMTVGKY+++NPN+G PLP++H++TVRVTS+YGN+YH
Sbjct: 26  TESLRFELQSGHTKCISEDIKSNSMTVGKYSIINPNEGFPLPDTHRVTVRVTSSYGNNYH 85

Query: 79  YADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTGVQAKDWSNVAKKGSVD 138
           Y DRV+SGQFAF AAEAGDYM+CFWA  H+P  T+TIDF+W+TGV AKDWSNVAKKG VD
Sbjct: 86  YGDRVESGQFAFVAAEAGDYMSCFWAAVHTPAITLTIDFEWKTGVAAKDWSNVAKKGQVD 145

Query: 139 VMELELKKLYDTVSSIHQEMFYLRER 164
           VMELELKKL DTVSSIH+EMFYLRER
Sbjct: 146 VMELELKKLQDTVSSIHEEMFYLRER 171

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726337|ref|NP_001237123.1| uncharacterized protein LOC100499866 precursor [Glycine max] gi|255627251|gb|ACU13970.1| unknown [Glycine max]

 Score =  261 bits (667), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 114/146 (78%), Positives = 132/146 (90%)

Query: 19  SQSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYH 78
           ++SLRFEIQS HTKCI+EDIKSNSMTVGKY +V+PN+G PLP++H+ TVRVTS+YGN+YH
Sbjct: 28  TESLRFEIQSGHTKCISEDIKSNSMTVGKYQIVSPNEGQPLPDAHRFTVRVTSSYGNNYH 87

Query: 79  YADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTGVQAKDWSNVAKKGSVD 138
           Y DRV +GQFAF A EAGDYM CFWAVDH+P  T+T+DFDW+TGV AKDWSNVAKKG VD
Sbjct: 88  YGDRVQTGQFAFAAVEAGDYMTCFWAVDHNPVETLTVDFDWKTGVAAKDWSNVAKKGQVD 147

Query: 139 VMELELKKLYDTVSSIHQEMFYLRER 164
           VMELELKKL DTVSSIH+EMFYLRE+
Sbjct: 148 VMELELKKLQDTVSSIHEEMFYLREK 173

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147853846|emb|CAN83809.1| hypothetical protein VITISV_026964 [Vitis vinifera]

 Score =  260 bits (664), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 117/146 (80%), Positives = 133/146 (91%)

Query: 10  LVIGILSSTSQSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRV 69
           ++IG L    QS+RFE+QSAHTKCIAEDIK++SMTVGKY+VVNPNDG+P+P+SHK+TVRV
Sbjct: 7   MMIGFLLGGVQSIRFELQSAHTKCIAEDIKADSMTVGKYSVVNPNDGYPIPDSHKVTVRV 66

Query: 70  TSAYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTGVQAKDWS 129
           TSAYGN+YHYADRVDSGQFAF AAEAGDYMACFW +DH P  T+TID DW+TGV AKDWS
Sbjct: 67  TSAYGNNYHYADRVDSGQFAFPAAEAGDYMACFWVLDHKPPLTLTIDLDWKTGVAAKDWS 126

Query: 130 NVAKKGSVDVMELELKKLYDTVSSIH 155
           NVAKKG VDVMELELKKLYDTV+SIH
Sbjct: 127 NVAKKGQVDVMELELKKLYDTVTSIH 152

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	164
TAIR|locus:2200630	214	AT1G26690 [Arabidopsis thalian	0.890	0.682	0.712	8.4e-58
TAIR|locus:2007196	214	AT1G69460 [Arabidopsis thalian	0.890	0.682	0.664	1.1e-53
TAIR|locus:2014864	212	AT1G14010 [Arabidopsis thalian	0.878	0.679	0.631	3.5e-52
TAIR|locus:2056976	213	AT2G03290 [Arabidopsis thalian	0.878	0.676	0.586	1.1e-46
TAIR|locus:2056730	166	AT2G03040 [Arabidopsis thalian	0.878	0.867	0.586	3e-46
TAIR|locus:2092788	225	AT3G29070 [Arabidopsis thalian	0.884	0.644	0.524	1.5e-42
TAIR|locus:2012335	217	AT1G09580 [Arabidopsis thalian	0.859	0.649	0.410	1.6e-29
TAIR|locus:2201098	216	p24delta5 "p24 subfamily delta	0.792	0.601	0.419	1.5e-26
TAIR|locus:2206520	212	AT1G57620 [Arabidopsis thalian	0.798	0.617	0.398	4.2e-24
DICTYBASE|DDB_G0277923	221	empD "emp24/gp25L/p24 family p	0.884	0.656	0.318	5.4e-15

TAIR|locus:2200630 AT1G26690 [Arabidopsis thaliana (taxid:3702)]

 Score = 594 (214.2 bits), Expect = 8.4e-58, P = 8.4e-58
 Identities = 104/146 (71%), Positives = 130/146 (89%)

Query:    19 SQSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYH 78
             SQSL FE+QS  TKCI+EDIKSNSMTVGKY VVNPN+ HP P+SHK+++RVTS+YGN+YH
Sbjct:    22 SQSLHFELQSGRTKCISEDIKSNSMTVGKYTVVNPNEAHPSPQSHKISIRVTSSYGNTYH 81

Query:    79 YADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTGVQAKDWSNVAKKGSVD 138
             +A+ V+SGQFAFTA E+GDYMAC+ AVDH P+ T++IDFDWRTGVQ+K WS+VAKK  V+
Sbjct:    82 HAEDVESGQFAFTAVESGDYMACYTAVDHKPEVTLSIDFDWRTGVQSKSWSSVAKKSQVE 141

Query:   139 VMELELKKLYDTVSSIHQEMFYLRER 164
             VME ++K+L +TV+SIH+EMFYLRER
Sbjct:   142 VMEFDVKRLIETVNSIHEEMFYLRER 167

GO:0005576 "extracellular region" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008320 "protein transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2007196 AT1G69460 [Arabidopsis thaliana (taxid:3702)]

 Score = 555 (200.4 bits), Expect = 1.1e-53, P = 1.1e-53
 Identities = 97/146 (66%), Positives = 126/146 (86%)

Query:    19 SQSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYH 78
             S SL F++ S  TKCIAEDIKSNSMTVGKYN+ NP++G  LP++HK++V+VTS  GN+YH
Sbjct:    22 SHSLHFDLHSGRTKCIAEDIKSNSMTVGKYNIDNPHEGQALPQTHKISVKVTSNSGNNYH 81

Query:    79 YADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTGVQAKDWSNVAKKGSVD 138
             +A++VDSGQFAF+A EAGDYMACF AVDH P+ +++IDF+W+TGVQ+K W+NVAKK  V+
Sbjct:    82 HAEQVDSGQFAFSAVEAGDYMACFTAVDHKPEVSLSIDFEWKTGVQSKSWANVAKKSQVE 141

Query:   139 VMELELKKLYDTVSSIHQEMFYLRER 164
             VME E+K L DTV+SIH+EM+YLR+R
Sbjct:   142 VMEFEVKSLLDTVNSIHEEMYYLRDR 167

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008320 "protein transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2014864 AT1G14010 [Arabidopsis thaliana (taxid:3702)]

 Score = 541 (195.5 bits), Expect = 3.5e-52, P = 3.5e-52
 Identities = 91/144 (63%), Positives = 120/144 (83%)

Query:    21 SLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYA 80
             S+R+E+ S HTKCI+E+I +N+MT+GKY+++NP++ HPLP SHK+TVRVTS  G +YH +
Sbjct:    22 SIRYELLSGHTKCISEEIHANAMTIGKYSIINPHEDHPLPSSHKVTVRVTSPQGTAYHES 81

Query:    81 DRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTGVQAKDWSNVAKKGSVDVM 140
             D V+SGQF+F A E GDY++CF AVDH P+TT+ IDFDWRTG+  KDWSNVAKK  V+ M
Sbjct:    82 DGVESGQFSFVAVETGDYISCFSAVDHKPETTLIIDFDWRTGIHTKDWSNVAKKSQVETM 141

Query:   141 ELELKKLYDTVSSIHQEMFYLRER 164
             E E+KKL++TV+ IH EMFYLR+R
Sbjct:   142 EFEVKKLFETVNGIHDEMFYLRDR 165

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008320 "protein transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2056976 AT2G03290 [Arabidopsis thaliana (taxid:3702)]

 Score = 489 (177.2 bits), Expect = 1.1e-46, P = 1.1e-46
 Identities = 85/145 (58%), Positives = 117/145 (80%)

Query:    21 SLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPN-DGHPLPESHKLTVRVTSAYGNSYHY 79
             S+R+E++S+ TKCI E+I  N+M++GKY +VNPN D HPLP+SHK+ V+V    G + H 
Sbjct:    22 SMRYELKSSKTKCIGEEIHENAMSIGKYFIVNPNEDNHPLPDSHKIIVKVMPPQGKNLHE 81

Query:    80 ADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTGVQAKDWSNVAKKGSVDV 139
             AD+V++GQF+FTA E G Y+AC  A+D+ P+TT+TIDFDW+TGV +K+W+NVAKK  VD+
Sbjct:    82 ADKVEAGQFSFTAYENGSYVACITAIDYKPETTLTIDFDWKTGVHSKEWTNVAKKSQVDM 141

Query:   140 MELELKKLYDTVSSIHQEMFYLRER 164
             ME ++K L DTV SIH+EM+YLRER
Sbjct:   142 MEYQVKTLMDTVISIHEEMYYLRER 166

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008320 "protein transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2056730 AT2G03040 [Arabidopsis thaliana (taxid:3702)]

 Score = 485 (175.8 bits), Expect = 3.0e-46, P = 3.0e-46
 Identities = 85/145 (58%), Positives = 116/145 (80%)

Query:    21 SLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPN-DGHPLPESHKLTVRVTSAYGNSYHY 79
             S+R+E++S+ TKCI E+I  N+M++GKY +VNPN D HPLP+SHK+ V+V    G + H 
Sbjct:    22 SMRYELKSSKTKCIGEEIHENAMSIGKYFIVNPNEDHHPLPDSHKIIVKVMPPQGKNLHE 81

Query:    80 ADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTGVQAKDWSNVAKKGSVDV 139
             AD V++GQF+FTA E G Y+AC  A+D+ P+TT+TIDFDW+TGV +K+W+NVAKK  VD+
Sbjct:    82 ADNVEAGQFSFTAYENGSYVACITAIDYKPETTLTIDFDWKTGVHSKEWTNVAKKSQVDM 141

Query:   140 MELELKKLYDTVSSIHQEMFYLRER 164
             ME ++K L DTV SIH+EM+YLRER
Sbjct:   142 MEYQVKTLMDTVISIHEEMYYLRER 166

GO:0006810 "transport" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2092788 AT3G29070 [Arabidopsis thaliana (taxid:3702)]

 Score = 450 (163.5 bits), Expect = 1.5e-42, P = 1.5e-42
 Identities = 76/145 (52%), Positives = 111/145 (76%)

Query:    20 QSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHY 79
             +S+R +++S +TKCI++DIK+N MTVG Y++VNPN+GH LP SHKL V V+S  G S+H+
Sbjct:    34 ESMRLDMESGNTKCISDDIKTNYMTVGTYSIVNPNEGHHLPPSHKLFVTVSSPKGKSHHH 93

Query:    80 ADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTGVQAKDWSNVAKKGSVDV 139
             A+ V+SG+F FTA E GDYM CF A  + P     +DF+W++GV+AKDW+ +AK+G + +
Sbjct:    94 AENVESGKFVFTAEETGDYMTCFVAPGYRPTAKFAVDFEWKSGVEAKDWTTIAKRGQITM 153

Query:   140 MELELKKLYDTVSSIHQEMFYLRER 164
             +E+E++KL D   +IH+EMF L ER
Sbjct:   154 LEVEVRKLLDVTETIHEEMFQLIER 178

GO:0005739 "mitochondrion" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008320 "protein transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2012335 AT1G09580 [Arabidopsis thaliana (taxid:3702)]

 Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
 Identities = 60/146 (41%), Positives = 98/146 (67%)

Query:    20 QSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHY 79
             +++  ++    TKC++E+I+SN + +  Y +++  D   +P    ++V+VTS YGN+ H 
Sbjct:    29 EAVWLDVPPTGTKCVSEEIQSNVVVLADYLIIS-EDHEVMPT---ISVKVTSPYGNNLHN 84

Query:    80 ADRVDSGQFAFTAAEAGDYMACFWAVDHSP-QTTVTIDFDWRTGVQAKDWSNVAKKGSVD 138
              + V  GQFAFT  E+G+Y+ACFWA + S     V+I+ DWRTG+ AKDW+++AKK  ++
Sbjct:    85 MENVTHGQFAFTTQESGNYLACFWADEKSHGNKNVSINIDWRTGIAAKDWASIAKKEKIE 144

Query:   139 VMELELKKLYDTVSSIHQEMFYLRER 164
              +ELE++KL   V +IH+ + YLR R
Sbjct:   145 GVELEIRKLEGAVEAIHENILYLRNR 170

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008320 "protein transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2201098 p24delta5 "p24 subfamily delta 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
 Identities = 57/136 (41%), Positives = 89/136 (65%)

Query:    31 TKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYADRVDSGQFAF 90
             TKC++E+I+SN + +  Y VV   D H    +  ++ +VTS YGN+ H+ + V  GQFAF
Sbjct:    38 TKCVSEEIQSNVVVLADYYVV---DEHNPENTPAVSSKVTSPYGNNLHHQENVTHGQFAF 94

Query:    91 TAAEAGDYMACFWAVD--HSPQTTVTIDFDWRTGVQAKDWSNVAKKGSVDVMELELKKLY 148
             T  EAG+Y+ACFW +D  H     +T+  DW+ G+ AKDW +VAKK  ++ +EL+L++L 
Sbjct:    95 TTQEAGNYLACFW-IDSSHHLANPITLGVDWKMGIAAKDWDSVAKKEKIEGVELQLRRLE 153

Query:   149 DTVSSIHQEMFYLRER 164
               V SI + + Y+++R
Sbjct:   154 GLVLSIRENLNYIKDR 169

GO:0005576 "extracellular region" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008320 "protein transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0005801 "cis-Golgi network" evidence=IDA

GO:0030134 "ER to Golgi transport vesicle" evidence=IDA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2206520 AT1G57620 [Arabidopsis thaliana (taxid:3702)]

 Score = 276 (102.2 bits), Expect = 4.2e-24, P = 4.2e-24
 Identities = 55/138 (39%), Positives = 88/138 (63%)

Query:    30 HT--KCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYADRVDSGQ 87
             HT  KC++E+I+SN + +  Y V++  + H +  +  ++V+VT+ YG   H+ +   +GQ
Sbjct:    32 HTGSKCVSEEIQSNVIVLADYLVIS--EEHSIFPT--VSVKVTAPYGTVLHHRENTTNGQ 87

Query:    88 FAFTAAEAGDYMACFWAVDHSP-QTTVTIDFDWRTGVQAKDWSNVAKKGSVDVMELELKK 146
             FAFT  E+G Y+ACF A   S      +I+ DW+TG+ AKDW ++A+K  ++ +ELE KK
Sbjct:    88 FAFTTQESGTYLACFEADAKSHGNKDFSINIDWKTGIAAKDWDSIARKEKIEGVELEFKK 147

Query:   147 LYDTVSSIHQEMFYLRER 164
             L   V +IH+ + YLR R
Sbjct:   148 LEGAVEAIHENLIYLRNR 165

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008320 "protein transmembrane transporter activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

DICTYBASE|DDB_G0277923 empD "emp24/gp25L/p24 family protein D" [Dictyostelium discoideum (taxid:44689)]

 Score = 190 (71.9 bits), Expect = 5.4e-15, P = 5.4e-15
 Identities = 50/157 (31%), Positives = 80/157 (50%)

Query:    19 SQSLRFEIQSAHTKCIAEDIKSNSMTVGKYNV---VNPNDGHP---LPESHKLTVRVTSA 72
             S S  FE+++A  KCI E+ + +++  GK+ V   ++ N       +  S ++   V   
Sbjct:    19 SYSFMFEVRAADEKCIVEEFRQDTLVNGKFEVSDRLSKNIAFQYEVVMASMQMKFYVRGP 78

Query:    73 YGNSYHYADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTV-----TIDFDWRTGVQAKD 127
              G+         +G  AF A EAGDY  CF   ++ P         T+  + +TGV+A D
Sbjct:    79 TGDLILVNHDASTGVIAFNAQEAGDYSFCFLD-NYRPGAQAMPLSRTVSLEIKTGVEAND 137

Query:   128 WSNVAKKGSVDVMELELKKLYDTVSSIHQEMFYLRER 164
             +S+V  KG +   E+ELKK+ D V SI  E+ Y++ R
Sbjct:   138 YSDVITKGQLKPSEIELKKIEDVVDSIKVEILYMKNR 174

GO:0016021 "integral to membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LQY3	P24D9_ARATH	No assigned EC number	0.6835	0.9634	0.7383	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_Genewise1_v1.C_LG_VIII0726 SubName- Full=Putative uncharacterized protein; (216 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	164
pfam01105	178	pfam01105, EMP24_GP25L, emp24/gp25L/p24 family/GOL	2e-33

>gnl|CDD|216301 pfam01105, EMP24_GP25L, emp24/gp25L/p24 family/GOLD

 Score =  116 bits (292), Expect = 2e-33
 Identities = 50/147 (34%), Positives = 78/147 (53%), Gaps = 14/147 (9%)

Query: 21  SLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNS---Y 77
           +L FE+ +   +C  E++   ++  G Y V++  +         +   +T   GN    Y
Sbjct: 1   ALTFELPAGEKECFYEEVPKGTLVTGSYQVISGGN-------LDIDFTITDPDGNGNVIY 53

Query: 78  HYADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTGVQAKDWSNVAKKGSV 137
              DR   G+F+FTA E+G+Y  CF     S  ++ T+ FD + G +AKD   +AKK  +
Sbjct: 54  SKEDRKSGGKFSFTATESGEYKFCFSN-SFSTFSSKTVSFDIKVGEEAKD---IAKKEKL 109

Query: 138 DVMELELKKLYDTVSSIHQEMFYLRER 164
           D +E ELKKL D ++ I +E  YLRER
Sbjct: 110 DPLEEELKKLEDQLNDIKREQKYLRER 136

Members of this family are implicated in bringing cargo forward from the ER and binding to coat proteins by their cytoplasmic domains. This domain corresponds closely to the beta-strand rich GOLD domain described in. The GOLD domain is always found combined with lipid- or membrane-association domains. Length = 178

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	164
KOG1691	210	consensus emp24/gp25L/p24 family of membrane traff	100.0
KOG1690	215	consensus emp24/gp25L/p24 family of membrane traff	100.0
KOG1692	201	consensus Putative cargo transport protein EMP24 (	100.0
KOG1693	209	consensus emp24/gp25L/p24 family of membrane traff	99.97
KOG3287	236	consensus Membrane trafficking protein, emp24/gp25	99.94
PF01105	183	EMP24_GP25L: emp24/gp25L/p24 family/GOLD; InterPro	99.94
PF01835	99	A2M_N: MG2 domain; InterPro: IPR002890 The protein	95.51
PHA03376	221	BARF1; Provisional	92.8
PF04151	70	PPC: Bacterial pre-peptidase C-terminal domain; In	92.13
PF13473	104	Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D	91.82
smart00557	93	IG_FLMN Filamin-type immunoglobulin domains. These	91.62
PF13860	81	FlgD_ig: FlgD Ig-like domain; PDB: 3C12_A 3OSV_A.	90.24
PF11589	106	DUF3244: Domain of unknown function (DUF3244); Int	88.22
PF13897	136	GOLD_2: Golgi-dynamics membrane-trafficking	87.61
PF10572	158	UPF0556: Uncharacterised protein family UPF0556; I	87.46
PF15417	132	DUF4624: Domain of unknown function (DUF4624)	85.81
PF05738	70	Cna_B: Cna protein B-type domain; InterPro: IPR008	84.94
PF00630	101	Filamin: Filamin/ABP280 repeat; InterPro: IPR01786	83.42
PRK06655	225	flgD flagellar basal body rod modification protein	83.14
PRK14081	667	triple tyrosine motif-containing protein; Provisio	82.47
PF09315	179	DUF1973: Domain of unknown function (DUF1973); Int	82.05
TIGR03096	135	nitroso_cyanin nitrosocyanin. Nitrosocyanin, as de	81.64
PF13620	82	CarboxypepD_reg: Carboxypeptidase regulatory-like	81.27
PRK12812	259	flgD flagellar basal body rod modification protein	81.06
PF12690	82	BsuPI: Intracellular proteinase inhibitor; InterPr	81.04
PRK12813	223	flgD flagellar basal body rod modification protein	80.71

>KOG1691 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.5e-34  Score=209.68  Aligned_cols=157  Identities=51%  Similarity=0.882  Sum_probs=139.6

Q ss_pred             hHHHHHHHHHHHhhceeeEEEEEeCCccceeceeccCCcEEEEEEEEEcCCCCCCCCCCceEEEEEeCCCCCeEEeeecc
Q 031159            4 LTLTLVLVIGILSSTSQSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYADRV   83 (164)
Q Consensus         4 ~~~~l~~~l~ll~~~~~a~~f~i~~~~~~Cf~e~v~~~~~v~~~y~v~~~~~~~~~~~~~~i~~~v~dp~g~~l~~~~~~   83 (164)
                      .+.++++++++++..+.|+.|++|+++++|+.|++.++..+.|.|.+.++.-+    ....+.+.|+||.|+.+++.++.
T Consensus         5 ~~~~~l~i~~~~~~~~~a~~f~v~~~~~kCi~EeI~~n~lv~g~y~i~~~~~~----~~~~~~~~Vts~~G~~~~~~env   80 (210)
T KOG1691|consen    5 CLSLLLLIFLLLLPLVHALRFDVPSKTTKCISEEIHENVLVVGDYEIINPNGD----HSHKLSVKVTSPYGNNLHSKENV   80 (210)
T ss_pred             hHHHHHHHHHHHhhhhheEEEEecCCCCEeehhhhccCeEEEEEEEEecCCCC----ccceEEEEEEcCCCceeehhhcc
Confidence            34455555566678999999999999999999999999999999999876411    01589999999999999999999


Q ss_pred             ccceEEEEeeccCceeEEEEecc--CCCCceEEEEEEEeecccccCchhhhhcCCccHHHHHHHHHHHHHHHHHHHHHHh
Q 031159           84 DSGQFAFTAAEAGDYMACFWAVD--HSPQTTVTIDFDWRTGVQAKDWSNVAKKGSVDVMELELKKLYDTVSSIHQEMFYL  161 (164)
Q Consensus        84 ~~g~~~f~~~~~G~y~~Cf~n~~--~~~~~~~~V~f~~~~g~~~~d~~~~a~~~~~~~l~~~l~~l~~~l~~I~~eq~y~  161 (164)
                      ++|+|+|++.+.|.|.+||.+..  ..+.....|.|||++|.+++||+++||+++++|+|.++++|++.+.+|+++..|+
T Consensus        81 ~~gqFaFta~e~~~y~~Cf~~~~~~~~p~~~~~I~ld~k~Gv~akdw~~IAKkeklep~E~elrrLed~~~sI~~e~~YL  160 (210)
T KOG1691|consen   81 TKGQFAFTAEESGMYEACFTADVPGHKPETKRSIDLDWKTGVEAKDWDSIAKKEKLEPLEVELRRLEDLVESIHEEMYYL  160 (210)
T ss_pred             ccceEEEEeccCCcEEEEEecccCCCCCCcceEEEEEeeccccccchHHHHhhhcCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999943  3234568999999999999999999999999999999999999999999999999


Q ss_pred             hhC
Q 031159          162 RER  164 (164)
Q Consensus       162 r~R  164 (164)
                      |.|
T Consensus       161 r~R  163 (210)
T KOG1691|consen  161 RER  163 (210)
T ss_pred             HHH
Confidence            987

>KOG1690 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.1e-33  Score=200.07  Aligned_cols=157  Identities=22%  Similarity=0.343  Sum_probs=136.3

Q ss_pred             HHHHHHHHHHhhceeeEEEEEeCCccceeceeccCCcEEEEEEEEE--cCCCCCCC-CCCceEEEEEeCCCCC--eEEee
Q 031159            6 LTLVLVIGILSSTSQSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVV--NPNDGHPL-PESHKLTVRVTSAYGN--SYHYA   80 (164)
Q Consensus         6 ~~l~~~l~ll~~~~~a~~f~i~~~~~~Cf~e~v~~~~~v~~~y~v~--~~~~~~~~-~~~~~i~~~v~dp~g~--~l~~~   80 (164)
                      +.++++|++|+..++|++|++..++++||++++|+++++.|+|.+.  +...+.|. .++.++.+.|.+|+++  +|..+
T Consensus         5 ~~~~lll~~l~~~~~a~yFy~~~~e~KCF~eelpk~tmv~G~yk~qlyd~~~~~y~~~p~~gm~VeV~e~fdnnh~Vl~q   84 (215)
T KOG1690|consen    5 MRLLLLLLLLATQVQALYFYIAGTEKKCFIEELPKGTMVTGNYKAQLYDDQLKGYGSYPNIGMHVEVKETFDNNHVVLSQ   84 (215)
T ss_pred             HHHHHHHHHHHhhccEEEEEecCCcccchhhhCCCCcEEEeeeeeeeecchhcccccCCCceEEEEeecCCCCceEEEee
Confidence            4555556667789999999999999999999999999999999986  33333332 2467999999999887  89999


Q ss_pred             eccccceEEEEeeccCceeEEEEeccCC--CCceEEEEEEEeecccccCchhhhhcCCccHHHHHHHHHHHHHHHHHHHH
Q 031159           81 DRVDSGQFAFTAAEAGDYMACFWAVDHS--PQTTVTIDFDWRTGVQAKDWSNVAKKGSVDVMELELKKLYDTVSSIHQEM  158 (164)
Q Consensus        81 ~~~~~g~~~f~~~~~G~y~~Cf~n~~~~--~~~~~~V~f~~~~g~~~~d~~~~a~~~~~~~l~~~l~~l~~~l~~I~~eq  158 (164)
                      +..++|+|+|++..+|+|+||+.+..+.  .++..+|++|+++|.++.++++  .+++++.++.+++.|.+++.+|+.||
T Consensus        85 ~~ss~G~ftFta~~~GeH~IC~~s~s~awf~~aklRvhld~qvG~~a~l~a~--~ke~~k~l~~Rv~~L~~~~~~IrkEQ  162 (215)
T KOG1690|consen   85 QYSSEGDFTFTALTPGEHRICIQSNSTAWFNGAKLRVHLDIQVGDHANLDAQ--IKETDKLLEGRVRQLNSRLESIRKEQ  162 (215)
T ss_pred             cCCCCCceEEEccCCCceEEEEecccchhhccceEEEEEEEeeCchhhhhhh--hhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999988764  4678999999999999887764  57888899999999999999999999


Q ss_pred             HHhhhC
Q 031159          159 FYLRER  164 (164)
Q Consensus       159 ~y~r~R  164 (164)
                      +|+|.|
T Consensus       163 ~~~R~R  168 (215)
T KOG1690|consen  163 NLQRER  168 (215)
T ss_pred             HHHHHH
Confidence            999987

>KOG1692 consensus Putative cargo transport protein EMP24 (p24 protein family) [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.8e-33  Score=198.84  Aligned_cols=139  Identities=21%  Similarity=0.395  Sum_probs=128.1

Q ss_pred             hceeeEEEEEeCCccceeceeccCCcEEEEEEEEEcCCCCCCCCCCceEEEEEeCCCCCeEEeeeccccceEEEEeeccC
Q 031159           17 STSQSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYADRVDSGQFAFTAAEAG   96 (164)
Q Consensus        17 ~~~~a~~f~i~~~~~~Cf~e~v~~~~~v~~~y~v~~~~~~~~~~~~~~i~~~v~dp~g~~l~~~~~~~~g~~~f~~~~~G   96 (164)
                      ..+.++-+.+++++++||+|++.+++.+.++|+|.+|+       ..++++.|++|.|+.++..+..+.|+|+|+++..|
T Consensus        16 ~~~~~~~is~~ah~eeCf~e~~~~gd~~~vsF~v~~gg-------~~~vd~~I~gP~~~~i~~~~~~ssgk~tF~a~~~G   88 (201)
T KOG1692|consen   16 ISAAGYGISLDAHEEECFFENLEEGDKLSVSFEVIDGG-------FLGVDVEITGPDGKIIHKGKRESSGKYTFTAPKKG   88 (201)
T ss_pred             HHhhheeEEEccchhhhHhhhhccCCEEEEEEEEecCC-------ccceeEEEECCCCchhhhcccccCceEEEEecCCc
Confidence            34889999999999999999999999999999999875       67999999999999999888888999999999999


Q ss_pred             ceeEEEEeccCCCCceEEEEEEEeecccccCchhhhhcCCccHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 031159           97 DYMACFWAVDHSPQTTVTIDFDWRTGVQAKDWSNVAKKGSVDVMELELKKLYDTVSSIHQEMFYLRER  164 (164)
Q Consensus        97 ~y~~Cf~n~~~~~~~~~~V~f~~~~g~~~~d~~~~a~~~~~~~l~~~l~~l~~~l~~I~~eq~y~r~R  164 (164)
                      .|++||+|..++ ..++.|.|++++|.... +++.+++.+.++|+..|++|++.+..++.||+|+..|
T Consensus        89 ~Y~fCF~N~~s~-mtpk~V~F~ihvg~~~~-~~d~~~d~~~~~L~~~I~eL~~al~~Vk~EQeY~~~R  154 (201)
T KOG1692|consen   89 TYTFCFSNKMST-MTPKTVMFTIHVGHAPQ-RDDLAKDAHQNKLEEMIRELSEALTSVKHEQEYMEAR  154 (201)
T ss_pred             eEEEEecCCCCC-CCceEEEEEEEEeeccc-cchhcccccccHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            999999999987 78899999999987654 4457889999999999999999999999999999875

>KOG1693 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=1.1e-30  Score=187.35  Aligned_cols=156  Identities=21%  Similarity=0.345  Sum_probs=132.4

Q ss_pred             ChhhHHHH--HHHHHHHhhceeeEEEEEeCCccceeceeccCCcE-EEEEEEEEcCCCCCCCCCCceEEEEEeCCCCCeE
Q 031159            1 MIRLTLTL--VLVIGILSSTSQSLRFEIQSAHTKCIAEDIKSNSM-TVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSY   77 (164)
Q Consensus         1 ~~~~~~~l--~~~l~ll~~~~~a~~f~i~~~~~~Cf~e~v~~~~~-v~~~y~v~~~~~~~~~~~~~~i~~~v~dp~g~~l   77 (164)
                      |.++...+  +++++++++.+..++|++|.+.++|||+++++++. ++..|+|..||       +.+|++.|.+|+|+++
T Consensus         1 m~~~~~v~~~~~lla~~~s~a~elTfeLp~~aKqC~Y~d~~~~~~~~~~~fqV~tGG-------~fDVD~~I~aPdgkvI   73 (209)
T KOG1693|consen    1 MPTLIVVLFQLLLLALLFSEASELTFELPDNAKQCFYEDLKKDDDTTSFEFQVQTGG-------HFDVDYDIEAPDGKVI   73 (209)
T ss_pred             CceeHHHHHHHHHHHHHhhhcccEEEEcCCcchhheeeecccCCceEEEEEEEEeCC-------ceeeEEEEECCCCCEE
Confidence            34444444  44444555568899999999999999999999865 99999999986       6799999999999999


Q ss_pred             EeeeccccceEEEEeeccCceeEEEEeccCCCCceEEEEEEEeecccccCchhh-hhcCCccHHHHHHHHHHHHHHHHHH
Q 031159           78 HYADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTGVQAKDWSNV-AKKGSVDVMELELKKLYDTVSSIHQ  156 (164)
Q Consensus        78 ~~~~~~~~g~~~f~~~~~G~y~~Cf~n~~~~~~~~~~V~f~~~~g~~~~d~~~~-a~~~~~~~l~~~l~~l~~~l~~I~~  156 (164)
                      +....+..+.|.|++...|+|++||+|..++ +..+.|.++++.|.+..-..+. +++..+..+|..+..+.+.|+.|-+
T Consensus        74 ~~~~kk~~~~~~f~ae~~G~Y~fCFsN~fst-f~~Kiv~~~~q~~~~~~~~~~~~~~~~~~~~mena~~~I~~~L~~I~~  152 (209)
T KOG1693|consen   74 YSEKKKRYDSFLFKAEGKGEYTFCFSNEFST-FSHKIVYMDFQVGEEPPLHPAVSNRDTALTQMENAIVEIHRALNKIDD  152 (209)
T ss_pred             eeccccccccEEEEEecceEEEEEecCcccc-ccceEeeehhhhccccccCccccccchHHHHHHHHHHHHHHHHHHHHH
Confidence            9999899999999999999999999999998 8889999999999654433332 2344678999999999999999999


Q ss_pred             HHHHhhhC
Q 031159          157 EMFYLRER  164 (164)
Q Consensus       157 eq~y~r~R  164 (164)
                      .|.|+|.|
T Consensus       153 ~q~y~R~R  160 (209)
T KOG1693|consen  153 TQTYYRLR  160 (209)
T ss_pred             HHHHHHHH
Confidence            99999987

>KOG3287 consensus Membrane trafficking protein, emp24/gp25L/p24 family [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=1.2e-25  Score=163.28  Aligned_cols=139  Identities=17%  Similarity=0.302  Sum_probs=119.5

Q ss_pred             eeeEEEEEeCCccceeceeccCCcEEEEEEEEEcCCCCCCCCCCceEEEEEeCCCCCeEEeeeccccceEEEEeeccCce
Q 031159           19 SQSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYADRVDSGQFAFTAAEAGDY   98 (164)
Q Consensus        19 ~~a~~f~i~~~~~~Cf~e~v~~~~~v~~~y~v~~~~~~~~~~~~~~i~~~v~dp~g~~l~~~~~~~~g~~~f~~~~~G~y   98 (164)
                      ...++|+||||+++|||+.++.+..+..+|+|++| +|     +.+|++++.+|.|.++.+.+.+..|.+++...++|.|
T Consensus        33 d~dftv~ipAGk~eCf~Q~v~~~~tle~eyQVi~G-~G-----Dl~i~Ftl~~P~G~~lv~~q~k~dg~ht~e~~e~GdY  106 (236)
T KOG3287|consen   33 DYDFTVMIPAGKTECFYQPVPQGATLEVEYQVIDG-AG-----DLDIDFTLLNPAGEVLVSDQRKVDGVHTVEVTETGDY  106 (236)
T ss_pred             ccceEEEecCCCceeeeeeccCCeEEEEEEEEEec-CC-----ccceeeEEeCCCccEEeecccccCceeEeeccCCcce
Confidence            45689999999999999999999999999999998 33     7899999999999999999999999999999999999


Q ss_pred             eEEEEeccCCCCceEEEEEEEee---ccc---ccCchhhhhc-----CCccHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 031159           99 MACFWAVDHSPQTTVTIDFDWRT---GVQ---AKDWSNVAKK-----GSVDVMELELKKLYDTVSSIHQEMFYLRER  164 (164)
Q Consensus        99 ~~Cf~n~~~~~~~~~~V~f~~~~---g~~---~~d~~~~a~~-----~~~~~l~~~l~~l~~~l~~I~~eq~y~r~R  164 (164)
                      ++||+|++|+ .+.+.|+|++..   |+.   ...|.+.++.     .+++.+++.+.++..++.....-|..+|+|
T Consensus       107 ~~CfDNsFS~-fs~K~Vffeli~~~~g~~~e~~e~w~k~~e~~~~Ld~kl~di~~~i~~i~~nl~k~~~~q~~lRa~  182 (236)
T KOG3287|consen  107 QVCFDNSFST-FSRKLVFFELILDAHGEFYEGDETWHKYKERTEQLDVKLDDIEDSIGTIKNNLNKMWQYQALLRAR  182 (236)
T ss_pred             EEEEcCcccc-ccceEEEEEEEeccccchhccchhHhhhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999998 888999999833   332   2344443222     367888899999999999999999999876

>PF01105 EMP24_GP25L: emp24/gp25L/p24 family/GOLD; InterPro: IPR009038 The GOLD (for Golgi dynamics) domain is a protein module found in several eukaryotic Golgi and lipid-traffic proteins

Probab=99.94  E-value=3.4e-28  Score=177.07  Aligned_cols=137  Identities=31%  Similarity=0.542  Sum_probs=0.0

Q ss_pred             eEEEEEeCCccceeceeccCCcEEEEEEEEEcCCCCCCCCCCceEEEEEe--CCCCCeEEeeeccc-cceEEEEeeccCc
Q 031159           21 SLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVT--SAYGNSYHYADRVD-SGQFAFTAAEAGD   97 (164)
Q Consensus        21 a~~f~i~~~~~~Cf~e~v~~~~~v~~~y~v~~~~~~~~~~~~~~i~~~v~--dp~g~~l~~~~~~~-~g~~~f~~~~~G~   97 (164)
                      |++|.|+||+++||++++++++.+.++|.+.+++      ++.++++.|+  +|+|++++.+.... +|+|+|++...|+
T Consensus         1 a~~f~l~~g~~~Cf~e~v~~~~~i~~~y~v~~~~------~~~~v~~~i~~~~~~~~~i~~~~~~~~~~~f~f~~~~~G~   74 (183)
T PF01105_consen    1 ALTFELEPGETECFYEEVPKGTTIRGSYRVTDGG------GAYDVDFTIRDPDPNGEVIYSKSDKESEGSFSFTAKESGE   74 (183)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CEEEEECCCCcEEEEEEcCCCcEEEEEEEEeecc------ccceEEEEEEecccCCceeeeecccccCCcEEEEeccCCC
Confidence            6899999999999999999999999999998764      1468999999  55668888875554 5799999999999


Q ss_pred             eeEEEEeccCCCCce-EEEEEEEeecccccCchhhhhcCCccHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 031159           98 YMACFWAVDHSPQTT-VTIDFDWRTGVQAKDWSNVAKKGSVDVMELELKKLYDTVSSIHQEMFYLRER  164 (164)
Q Consensus        98 y~~Cf~n~~~~~~~~-~~V~f~~~~g~~~~d~~~~a~~~~~~~l~~~l~~l~~~l~~I~~eq~y~r~R  164 (164)
                      |++||+|+.+. ..+ +.|+|++++|.+..|+.+.++++++++++..|.+|...++.|+.+|.|++.|
T Consensus        75 y~iCf~n~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~i~~~q~~~~~r  141 (183)
T PF01105_consen   75 YQICFDNSSSS-FSPSKRVSFDIDVGNENKDYKNVAKKEHLDPLEESLEKLESNLKEIKDEQKYLRER  141 (183)
T ss_dssp             --------------------------------------------------------------------
T ss_pred             EEEEEEcCCCC-ccccEEEEEEEEEeecccchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999886 444 9999999999877677788999999999999999999999999999999876

It is typically between 90 and 150 amino acids long. Most of the size difference observed in the GOLD-domain superfamily is traceable to a single large low-complexity insert that is seen in some versions of the domain. With the exception of the p24 proteins, which have a simple architecture with the GOLD domain as their only globular domain, all other GOLD-domain proteins contain additional conserved globular domains. In these proteins, the GOLD domain co-occurs with lipid-, sterol- or fatty acid-binding domains such as PH, CRAL-TRIO, FYVE oxysterol binding- and acyl CoA-binding domains, suggesting that these proteins may interact with membranes. The GOLD domain can also be found associated with a RUN domain, which may have a role in the interaction of various proteins with cytoskeletal filaments. The GOLD domain is predicted to mediate diverse protein-protein interactions []. A secondary structure prediction for the GOLD domain reveals that it is likely to adopt a compact all-beta-fold structure with six to seven strands. Most of the sequence conservation is centred on the hydrophobic cores that support these predicted strands. The predicted secondary-structure elements and the size of the conserved core of the domain suggests that it may form a beta- sandwich fold with the strands arranged in two beta sheets stacked on each other []. Some proteins known to contain a GOLD domain are listed below: Eukaryotic proteins of the p24 family. Animal Sec14-like proteins. They are involved in secretion. Human Golgi resident protein GCP60. It interacts with the Golgi integral membrane protein Giantin. Yeast oxysterol-binding protein homologue 3 (OSH3). ; GO: 0006810 transport, 0016021 integral to membrane; PDB: 1P23_A 1M23_A.

>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white

Probab=95.51  E-value=0.37  Score=31.18  Aligned_cols=68  Identities=16%  Similarity=0.176  Sum_probs=41.4

Q ss_pred             cCCcEEEEEEEEEcCCCCCCCCCCceEEEEEeCCCCCeEEeeec---cccceEEEEee--c---cCceeEEEEecc
Q 031159           39 KSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYADR---VDSGQFAFTAA--E---AGDYMACFWAVD  106 (164)
Q Consensus        39 ~~~~~v~~~y~v~~~~~~~~~~~~~~i~~~v~dp~g~~l~~~~~---~~~g~~~f~~~--~---~G~y~~Cf~n~~  106 (164)
                      .+++.|.+.--+.+.+.....+.+..+.+.|.||+|+.+..+..   ...|.+++.-+  .   .|.|++=+....
T Consensus        12 rPGetV~~~~~~~~~~~~~~~~~~~~~~v~i~dp~g~~v~~~~~~~~~~~G~~~~~~~lp~~~~~G~y~i~~~~~~   87 (99)
T PF01835_consen   12 RPGETVHFRAIVRDLDNDFKPPANSPVTVTIKDPSGNEVFRWSVNTTNENGIFSGSFQLPDDAPLGTYTIRVKTDD   87 (99)
T ss_dssp             -TTSEEEEEEEEEEECTTCSCESSEEEEEEEEETTSEEEEEEEEEETTCTTEEEEEEE--SS---EEEEEEEEETT
T ss_pred             CCCCEEEEEEEEeccccccccccCCceEEEEECCCCCEEEEEEeeeeCCCCEEEEEEECCCCCCCEeEEEEEEEcc
Confidence            35666666655544331112335679999999999999987655   23554444432  2   488888777753

A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....

>PHA03376 BARF1; Provisional

Probab=92.80  E-value=2.2  Score=31.66  Aligned_cols=96  Identities=10%  Similarity=0.113  Sum_probs=51.9

Q ss_pred             ChhhHHHHHHHHHHHhhceeeEEEEEeCCcc-ceeceeccCCcEEEEEEEEEcCCCCCCCCCCceEEEEEeCCCCCeEEe
Q 031159            1 MIRLTLTLVLVIGILSSTSQSLRFEIQSAHT-KCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHY   79 (164)
Q Consensus         1 ~~~~~~~l~~~l~ll~~~~~a~~f~i~~~~~-~Cf~e~v~~~~~v~~~y~v~~~~~~~~~~~~~~i~~~v~dp~g~~l~~   79 (164)
                      |.|+.+.||++..++ ..+.++.-.+..... -|-+-.......+.+..+=..++       +..+-+.+.  .|++++.
T Consensus         1 ~~~~~~~Ll~La~l~-~sg~pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~-------~~~VvL~~~--ggdVv~~   70 (221)
T PHA03376          1 MARFIAQLLLLASCV-AAGQAVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPG-------EEQVLIGRM--HHDVIFI   70 (221)
T ss_pred             ChhHHHHHHHHHHHh-ccCcchhheeCCcEEEEecccCccCCCceEEEEEecCCC-------CCCEEEEEc--CCeeeee
Confidence            889988888866665 344455555554433 48887555555555554432221       234444443  2333332


Q ss_pred             eecccc---------ceEEEEe-----eccCceeEEEEeccC
Q 031159           80 ADRVDS---------GQFAFTA-----AEAGDYMACFWAVDH  107 (164)
Q Consensus        80 ~~~~~~---------g~~~f~~-----~~~G~y~~Cf~n~~~  107 (164)
                      +- +-+         |+++...     -..|.|.-+|.-...
T Consensus        71 Qm-EyRGrtD~~~~~gnvsLvI~~l~lSDdGtY~C~fQkge~  111 (221)
T PHA03376         71 EW-PFRGFFDIHRSANTFFLVVTAANISHDGNYLCRMKLGET  111 (221)
T ss_pred             ee-ccccEEEEEecCCeEEEEEEeeeecCCceEEEEEEcCCC
Confidence            21 333         4444333     447999988886543

>PF04151 PPC: Bacterial pre-peptidase C-terminal domain; InterPro: IPR007280 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=92.13  E-value=0.93  Score=27.39  Aligned_cols=60  Identities=18%  Similarity=0.187  Sum_probs=39.8

Q ss_pred             eeceeccCCcEEEEEEEEEcCCCCCCCCCCceEEEEEeCCCCCeEEeeeccc-----cceEEEEeeccCceeEEE
Q 031159           33 CIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYADRVD-----SGQFAFTAAEAGDYMACF  102 (164)
Q Consensus        33 Cf~e~v~~~~~v~~~y~v~~~~~~~~~~~~~~i~~~v~dp~g~~l~~~~~~~-----~g~~~f~~~~~G~y~~Cf  102 (164)
                      .|.-+++++..+.+.  +.++        ..+.++.+.+++|..+......+     .....|++...|+|.+=.
T Consensus         4 ~y~f~v~ag~~l~i~--l~~~--------~~d~dl~l~~~~g~~~~~~d~~~~~~~~~~~i~~~~~~~GtYyi~V   68 (70)
T PF04151_consen    4 YYSFTVPAGGTLTID--LSGG--------SGDADLYLYDSNGNSLASYDDSSQSGGNDESITFTAPAAGTYYIRV   68 (70)
T ss_dssp             EEEEEESTTEEEEEE--ECET--------TSSEEEEEEETTSSSCEECCCCTCETTSEEEEEEEESSSEEEEEEE
T ss_pred             EEEEEEcCCCEEEEE--EcCC--------CCCeEEEEEcCCCCchhhheecCCCCCCccEEEEEcCCCEEEEEEE
Confidence            466677787766555  4332        22677899999988777632222     355778888999997643

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. This domain is normally found at the C terminus of secreted archaeal and bacterial peptidases, the majority of which belong to MEROPS peptidase families M4 (vibriolysin, IPR001570 from INTERPRO), M9A amd M9B (microbial collangenase, IPR002169 from INTERPRO), M28 (aminopeptidase Ap1, IPR007484 from INTERPRO) and S8 (subtilisin family peptidases, IPR000209 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 4DY5_B 4DXZ_A 4DY3_B 3JQW_A 3JQX_C 1NQJ_B 1NQD_A 2O8O_A 1WMF_A 1WME_A ....

>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D

Probab=91.82  E-value=1.1  Score=29.29  Aligned_cols=22  Identities=23%  Similarity=0.516  Sum_probs=13.0

Q ss_pred             ccceEEEEeeccCceeE-EEEec
Q 031159           84 DSGQFAFTAAEAGDYMA-CFWAV  105 (164)
Q Consensus        84 ~~g~~~f~~~~~G~y~~-Cf~n~  105 (164)
                      ....+.|++...|+|.+ |=.+.
T Consensus        74 ~~~~~~f~~~~~G~y~~~C~~~~   96 (104)
T PF13473_consen   74 ETATVTFTPLKPGEYEFYCTMHP   96 (104)
T ss_dssp             -EEEEEEEE-S-EEEEEB-SSS-
T ss_pred             CEEEEEEcCCCCEEEEEEcCCCC
Confidence            35678888899999987 85433

>smart00557 IG_FLMN Filamin-type immunoglobulin domains

Probab=91.62  E-value=2.4  Score=27.15  Aligned_cols=45  Identities=24%  Similarity=0.333  Sum_probs=31.2

Q ss_pred             CceEEEEEeCCCCCeEEee-eccccc--eEEEEeeccCceeEEEEecc
Q 031159           62 SHKLTVRVTSAYGNSYHYA-DRVDSG--QFAFTAAEAGDYMACFWAVD  106 (164)
Q Consensus        62 ~~~i~~~v~dp~g~~l~~~-~~~~~g--~~~f~~~~~G~y~~Cf~n~~  106 (164)
                      ...+.+.|.+|+|+.+-.+ .+...|  ..+|+....|.|.+.+.-..
T Consensus        31 ~~~~~v~i~~p~g~~~~~~v~d~~dGty~v~y~P~~~G~~~i~V~~~g   78 (93)
T smart00557       31 GGELEVEVTGPSGKKVPVEVKDNGDGTYTVSYTPTEPGDYTVTVKFGG   78 (93)
T ss_pred             CCcEEEEEECCCCCeeEeEEEeCCCCEEEEEEEeCCCEeEEEEEEECC
Confidence            4589999999999654322 223334  55778888899988877553

These form a rod-like structure in the actin-binding cytoskeleton protein, filamin. The C-terminal repeats of filamin bind beta1-integrin (CD29).

>PF13860 FlgD_ig: FlgD Ig-like domain; PDB: 3C12_A 3OSV_A

Probab=90.24  E-value=2.1  Score=26.79  Aligned_cols=43  Identities=16%  Similarity=0.258  Sum_probs=27.8

Q ss_pred             cEEEEEEEEEcCCCCCCCCCCceEEEEEeCCCCCeEEeee--ccccceEEEEe
Q 031159           42 SMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYAD--RVDSGQFAFTA   92 (164)
Q Consensus        42 ~~v~~~y~v~~~~~~~~~~~~~~i~~~v~dp~g~~l~~~~--~~~~g~~~f~~   92 (164)
                      ....+.|.+..+        ...+.+.|+|.+|++|.+..  ..+.|.+.|+-
T Consensus        12 ~~~~~~~~l~~~--------a~~v~v~I~d~~G~~V~t~~~~~~~~G~~~~~W   56 (81)
T PF13860_consen   12 TKGSIEYTLPED--------ADNVTVTIYDSNGQVVRTISLGSQSAGEHSFTW   56 (81)
T ss_dssp             CEEEEEEEECSS--------CEEEEEEEEETTS-EEEEEEEEECSSEEEEEEE
T ss_pred             EEEEEEEeCCCc--------ccEEEEEEEcCCCCEEEEEEcCCcCCceEEEEE
Confidence            467777777543        34789999999999998643  22345444443

>PF11589 DUF3244: Domain of unknown function (DUF3244); InterPro: IPR021638 This family of proteins with unknown function appear to be restricted to Bacteroidetes

Probab=88.22  E-value=2.6  Score=27.84  Aligned_cols=46  Identities=11%  Similarity=0.134  Sum_probs=31.4

Q ss_pred             CceEEEEEeCCCCCeEEeeeccc--cceEEEEe--eccCceeEEEEeccC
Q 031159           62 SHKLTVRVTSAYGNSYHYADRVD--SGQFAFTA--AEAGDYMACFWAVDH  107 (164)
Q Consensus        62 ~~~i~~~v~dp~g~~l~~~~~~~--~g~~~f~~--~~~G~y~~Cf~n~~~  107 (164)
                      ...+.++|.|..|+++++.....  ....++..  ...|.|.+=+.+...
T Consensus        47 ~~~vtI~I~d~~G~vVy~~~~~~~~~~~~~I~L~~~~~G~Y~l~i~~~~g   96 (106)
T PF11589_consen   47 IGDVTITIKDSTGNVVYSETVSNSAGQSITIDLNGLPSGEYTLEITNGNG   96 (106)
T ss_dssp             -SEEEEEEEETT--EEEEEEESCGGTTEEEEE-TTS-SEEEEEEEEECTC
T ss_pred             CCCEEEEEEeCCCCEEEEEEccCCCCcEEEEEeCCCCCccEEEEEEeCCC
Confidence            34799999999999999875433  33456665  457999999998865

The protein may have an immunoglobulin-like beta-sandwich fold however this cannot be confirmed. ; PDB: 3D33_B 3SD2_A.

>PF13897 GOLD_2: Golgi-dynamics membrane-trafficking

Probab=87.61  E-value=0.78  Score=31.81  Aligned_cols=30  Identities=13%  Similarity=0.073  Sum_probs=23.8

Q ss_pred             EEEeeccCceeEEEEeccCCCCceEEEEEEE
Q 031159           89 AFTAAEAGDYMACFWAVDHSPQTTVTIDFDW  119 (164)
Q Consensus        89 ~f~~~~~G~y~~Cf~n~~~~~~~~~~V~f~~  119 (164)
                      +++....|.|-++|+|+.|- ...|++.+.+
T Consensus       104 s~~c~~~GvYvLkFDNSYS~-~rsK~l~Y~V  133 (136)
T PF13897_consen  104 SHTCPGPGVYVLKFDNSYSW-FRSKKLYYRV  133 (136)
T ss_pred             EEECCCCeEEEEEeeCccee-EEeeEEEEEE
Confidence            45567899999999999986 5667777665

>PF10572 UPF0556: Uncharacterised protein family UPF0556; InterPro: IPR018887 This family of proteins has no known function

Probab=87.46  E-value=8.4  Score=27.44  Aligned_cols=53  Identities=13%  Similarity=0.196  Sum_probs=30.9

Q ss_pred             ChhhHHHHHHHHHHHh----hceeeEEEEEeCCcc-ceeceeccCCcEEEEEEEEEcCC
Q 031159            1 MIRLTLTLVLVIGILS----STSQSLRFEIQSAHT-KCIAEDIKSNSMTVGKYNVVNPN   54 (164)
Q Consensus         1 ~~~~~~~l~~~l~ll~----~~~~a~~f~i~~~~~-~Cf~e~v~~~~~v~~~y~v~~~~   54 (164)
                      |.....++|++++|++    .-.....|.+.||+. .=|.+.+. +-.-.++|.+.+|.
T Consensus         1 ~~~~~~~~l~~~~l~~~~s~~e~~t~eFdvkP~G~~~t~~~~~~-~~~C~FTYAaqGGT   58 (158)
T PF10572_consen    1 MAAWAALLLAAVLLLVVHSVSEPTTKEFDVKPGGVVHTFSESLG-KYKCTFTYAAQGGT   58 (158)
T ss_pred             ChhHHHHHHHHHHHhhccccccccceeEEecCCCEEEEeEEecC-ceEEEEEEEecCCc
Confidence            4444455555444432    224556889999977 33433333 55667888887654

>PF15417 DUF4624: Domain of unknown function (DUF4624)

Probab=85.81  E-value=8.1  Score=25.97  Aligned_cols=78  Identities=13%  Similarity=0.339  Sum_probs=46.2

Q ss_pred             CccceeceeccC-CcEEEEEEEEEcCCCCCCCCCCceEEEEEeCCC-CCeEEeeec---cccceEEEEe---eccCceeE
Q 031159           29 AHTKCIAEDIKS-NSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAY-GNSYHYADR---VDSGQFAFTA---AEAGDYMA  100 (164)
Q Consensus        29 ~~~~Cf~e~v~~-~~~v~~~y~v~~~~~~~~~~~~~~i~~~v~dp~-g~~l~~~~~---~~~g~~~f~~---~~~G~y~~  100 (164)
                      ++-.|..+++.. +..+  +|++ +|.         ..-|.|.|.+ +.++|+...   .+...|+...   +...+|-+
T Consensus        37 ~rLFcVs~Die~L~aEv--~f~m-DGe---------~~iVEiKd~~~devLWsn~~~~~V~~dt~tisL~nlqk~kEY~V  104 (132)
T PF15417_consen   37 GRLFCVSEDIEALDAEV--YFQM-DGE---------SGIVEIKDRKTDEVLWSNTWNGKVSGDTFTISLNNLQKEKEYVV  104 (132)
T ss_pred             ceEEEEecchheeeeEE--EEEE-cCc---------cceEEeccCCccceeeccccccccccceEEEEhhhcccCceEEE
Confidence            456788888866 3433  4444 443         3346777775 457776432   2244555544   45789999


Q ss_pred             EEEeccCCCCceEEEEEEEee
Q 031159          101 CFWAVDHSPQTTVTIDFDWRT  121 (164)
Q Consensus       101 Cf~n~~~~~~~~~~V~f~~~~  121 (164)
                      ||....-   ....|.+.|+.
T Consensus       105 ~ftGtkI---nhAvv~vtFeS  122 (132)
T PF15417_consen  105 CFTGTKI---NHAVVKVTFES  122 (132)
T ss_pred             EEeccEe---eeEEEEEEecc
Confidence            9998763   33445555543

>PF05738 Cna_B: Cna protein B-type domain; InterPro: IPR008454 This entry represents a repeated B region domain found in the collagen-binding surface protein Cna in Staphylococcus aureus, as well as other related domains

Probab=84.94  E-value=2.3  Score=25.41  Aligned_cols=44  Identities=16%  Similarity=0.188  Sum_probs=35.7

Q ss_pred             eEEEEEeCCCCCeEEe--eeccccceEEEEeeccCceeEEEEeccC
Q 031159           64 KLTVRVTSAYGNSYHY--ADRVDSGQFAFTAAEAGDYMACFWAVDH  107 (164)
Q Consensus        64 ~i~~~v~dp~g~~l~~--~~~~~~g~~~f~~~~~G~y~~Cf~n~~~  107 (164)
                      ++.|.+++.++.....  ......|.+.|.--..|.|.+=......
T Consensus         3 Ga~f~L~~~~~~~~~~~~~~Td~~G~~~f~~L~~G~Y~l~E~~aP~   48 (70)
T PF05738_consen    3 GATFELYDEDGNEVIEVTVTTDENGKYTFKNLPPGTYTLKETKAPD   48 (70)
T ss_dssp             TEEEEEEETTSEEEEEEEEEGGTTSEEEEEEEESEEEEEEEEETTT
T ss_pred             CeEEEEEECCCCEEEEEEEEECCCCEEEEeecCCeEEEEEEEECCC
Confidence            5778889888888775  5556789999999999999998887544

The B region domain of Cna has a prealbumin-like beta-sandwich fold of seven strands in two sheets with a Greek key topology []. However, this domain does not mediate collagen binding, the IPR008456 from INTERPRO region carries out that function; instead it appears to form a stalk that presents the ligand binding domain away from the bacterial cell surface. Cna is a collagen-binding MSCRAMM (Microbial Surface Component Recognizing Adhesive Matrix Molecules), and is necessary and sufficient for S. aureus cells to adhere to cartilage.; PDB: 2X5P_A 3RKP_A 3KPT_A 1VLF_T 1TI2_F 1TI6_D 1TI4_J 1VLE_V 1VLD_X 3PF2_A ....

>PF00630 Filamin: Filamin/ABP280 repeat; InterPro: IPR017868 The many different actin cross-linking proteins share a common architecture, consisting of a globular actin-binding domain and an extended rod

Probab=83.42  E-value=9.3  Score=24.36  Aligned_cols=43  Identities=21%  Similarity=0.281  Sum_probs=28.0

Q ss_pred             ceEEEEEeCCCCC----eEE-eeeccccc--eEEEEeeccCceeEEEEec
Q 031159           63 HKLTVRVTSAYGN----SYH-YADRVDSG--QFAFTAAEAGDYMACFWAV  105 (164)
Q Consensus        63 ~~i~~~v~dp~g~----~l~-~~~~~~~g--~~~f~~~~~G~y~~Cf~n~  105 (164)
                      ..+.+.|.+|++.    .+. .-.+...|  ..+|+....|.|++++.-.
T Consensus        42 ~~~~v~i~~p~~~~~~~~~~~~v~~~~~G~y~v~y~p~~~G~y~i~V~~~   91 (101)
T PF00630_consen   42 DEFQVTITSPDGKEEPVPVPVEVIDNGDGTYTVSYTPTEPGKYKISVKIN   91 (101)
T ss_dssp             SEEEEEEESSSSESS--EEEEEEEEESSSEEEEEEEESSSEEEEEEEEES
T ss_pred             ceeEEEEeCCCCCccccccceEEEECCCCEEEEEEEeCccEeEEEEEEEC
Confidence            4678999999987    322 22223344  5567778888888876643

Whereas their actin-binding domains consist of two calponin homology domains (see IPR001715 from INTERPRO), their rods fall into three families. The rod domain of the family including the Dictyostelium discoideum (Slime mould) gelation factor (ABP120) and human filamin (ABP280) is constructed from tandem repeats of a 100-residue motif that is glycine and proline rich []. The gelation factor's rod contains 6 copies of the repeat, whereas filamin has a rod constructed from 24 repeats. The resolution of the 3D structure of rod repeats from the gelation factor has shown that they consist of a beta-sandwich, formed by two beta-sheets arranged in an immunoglobulin-like fold [, ]. Because conserved residues that form the core of the repeats are preserved in filamin, the repeat structure should be common to the members of the gelation factor/filamin family. The head to tail homodimerisation is crucial to the function of the ABP120 and ABP280 proteins. This interaction involves a small portion at the distal end of the rod domains. For the gelation factor it has been shown that the carboxy-terminal repeat 6 dimerises through a double edge-to-edge extension of the beta-sheet and that repeat 5 contributes to dimerisation to some extent [, , ].; PDB: 2DI9_A 2EEC_A 2DIC_A 2EEA_A 2DMC_A 2EE9_A 2D7O_A 2D7N_A 2K7P_A 2NQC_A ....

>PRK06655 flgD flagellar basal body rod modification protein; Reviewed

Probab=83.14  E-value=7.9  Score=29.36  Aligned_cols=55  Identities=22%  Similarity=0.216  Sum_probs=38.2

Q ss_pred             EEEEEEEEEcCCCCCCCCCCceEEEEEeCCCCCeEEeee--ccccceEEEEe---------eccCceeEEEEec
Q 031159           43 MTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYAD--RVDSGQFAFTA---------AEAGDYMACFWAV  105 (164)
Q Consensus        43 ~v~~~y~v~~~~~~~~~~~~~~i~~~v~dp~g~~l~~~~--~~~~g~~~f~~---------~~~G~y~~Cf~n~  105 (164)
                      .+.+.|....+        ...+.+.|+|.+|++|+.-.  ....|.+.|+-         -..|.|.+=+...
T Consensus       114 ~~~~~~~l~~~--------a~~vti~I~D~~G~~Vrt~~lg~~~aG~~~f~WDG~d~~G~~lp~G~Yt~~V~A~  179 (225)
T PRK06655        114 TTPFGVELPSA--------ADNVTVTITDSAGQVVRTIDLGAQSAGVVSFTWDGTDTDGNALPDGNYTIKASAS  179 (225)
T ss_pred             ceEEEEEcCCC--------CcEEEEEEEcCCCCEEEEEecCCcCCCceeEEECCCCCCCCcCCCeeEEEEEEEE
Confidence            45666665433        34799999999999998543  34577777743         2269999988755

>PRK14081 triple tyrosine motif-containing protein; Provisional

Probab=82.47  E-value=30  Score=30.60  Aligned_cols=58  Identities=10%  Similarity=0.086  Sum_probs=41.3

Q ss_pred             CceEEEEEeCCCCCeEEeeeccccceEEEEeeccCceeEEE--EeccCCC--CceEEEEEEEe
Q 031159           62 SHKLTVRVTSAYGNSYHYADRVDSGQFAFTAAEAGDYMACF--WAVDHSP--QTTVTIDFDWR  120 (164)
Q Consensus        62 ~~~i~~~v~dp~g~~l~~~~~~~~g~~~f~~~~~G~y~~Cf--~n~~~~~--~~~~~V~f~~~  120 (164)
                      +....+.|.. +|+.+....-..+..+.|+....|.|++=+  .+..|.+  -..+.|+|++.
T Consensus       415 ~~lY~f~ik~-ng~~ve~~~Y~~~~~~~f~P~~~G~Y~IeV~vKdk~S~~~yD~~k~v~l~V~  476 (667)
T PRK14081        415 NLRYSFIIKK-DGKEEEKIDYGKNNWVNFIPEEKGNYELEVRVKDKYSDKEYDAHTIVYIKVH  476 (667)
T ss_pred             eEEEEEEEEE-CCEEEEEeecccccEEEEEECCCeeEEEEEEEecccCchhcccceEEEEEEe
Confidence            4566666665 777777777778999999999999998754  4554541  23577777764

>PF09315 DUF1973: Domain of unknown function (DUF1973); InterPro: IPR015394 These functionally uncharacterised domains are found in various eukaryotic calcium-dependent chloride channels

Probab=82.05  E-value=17  Score=26.49  Aligned_cols=45  Identities=18%  Similarity=0.225  Sum_probs=30.2

Q ss_pred             eEEEEEeCCCCCeEEe-eeccccceEEEEe---eccCceeEEEEeccCC
Q 031159           64 KLTVRVTSAYGNSYHY-ADRVDSGQFAFTA---AEAGDYMACFWAVDHS  108 (164)
Q Consensus        64 ~i~~~v~dp~g~~l~~-~~~~~~g~~~f~~---~~~G~y~~Cf~n~~~~  108 (164)
                      ...+.+.+|+|+.+.. ..+.......+..   .+.|..++.+.|..+.
T Consensus        42 ~p~i~L~~P~G~~~~~~~~d~~~~~~~i~ipg~ae~G~W~y~i~~~~~~   90 (179)
T PF09315_consen   42 PPSITLTDPSGTVYTTFTTDSNSKTARIQIPGTAEVGTWTYSITNTSSS   90 (179)
T ss_pred             CceEEEECCCCCEEeeeEEcccccEEEEECCCCcccccEEEEEecCCCC
Confidence            4567799999998865 2333334333433   4579999999877654

>TIGR03096 nitroso_cyanin nitrosocyanin

Probab=81.64  E-value=13  Score=25.96  Aligned_cols=80  Identities=16%  Similarity=0.118  Sum_probs=41.4

Q ss_pred             eeEEEEEeCCccceeceeccCC---cEEEEEEEEEcCCCCCCCCCCceEEEEEeCCCCCe---EEee-----e--ccccc
Q 031159           20 QSLRFEIQSAHTKCIAEDIKSN---SMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNS---YHYA-----D--RVDSG   86 (164)
Q Consensus        20 ~a~~f~i~~~~~~Cf~e~v~~~---~~v~~~y~v~~~~~~~~~~~~~~i~~~v~dp~g~~---l~~~-----~--~~~~g   86 (164)
                      +.|...|.+..+.----+++.-   +..-++|.+.....  ..+.+..|.+++.|.++-.   ....     .  -....
T Consensus        25 ~~f~~~i~~~~~~~~~~~~~~~~~~~i~a~n~~~~P~~I--~VkaGD~Vtl~vtN~d~~~H~f~i~~~gis~~I~pGet~  102 (135)
T TIGR03096        25 QSFTVVINAYDTTIPELNVEGVTVKNIRAFNVLNEPEAL--VVKKGTPVKVTVENKSPISEGFSIDAYGISEVIKAGETK  102 (135)
T ss_pred             ceeEEEEeccccEeeEEEeCCEEEEEEEeeeeEEcCCEE--EECCCCEEEEEEEeCCCCccceEECCCCcceEECCCCeE
Confidence            4677777765544311113332   33355666643211  1123557877777665431   1111     1  11234


Q ss_pred             eEEEEeeccCceeE-E
Q 031159           87 QFAFTAAEAGDYMA-C  101 (164)
Q Consensus        87 ~~~f~~~~~G~y~~-C  101 (164)
                      .++|++...|.|.+ |
T Consensus       103 TitF~adKpG~Y~y~C  118 (135)
T TIGR03096       103 TISFKADKAGAFTIWC  118 (135)
T ss_pred             EEEEECCCCEEEEEeC
Confidence            57899999999975 6

Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.

>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A

Probab=81.27  E-value=2.2  Score=26.23  Aligned_cols=44  Identities=23%  Similarity=0.266  Sum_probs=30.5

Q ss_pred             eEEEEEeCCCCCeEEeeeccccceEEEEeeccCceeEEEEeccC
Q 031159           64 KLTVRVTSAYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAVDH  107 (164)
Q Consensus        64 ~i~~~v~dp~g~~l~~~~~~~~g~~~f~~~~~G~y~~Cf~n~~~  107 (164)
                      .+.|.+.+..+...........|+|.|..-..|.|.+=+.....
T Consensus        16 ~a~V~l~~~~~~~~~~~~Td~~G~f~~~~l~~g~Y~l~v~~~g~   59 (82)
T PF13620_consen   16 GATVTLTDQDGGTVYTTTTDSDGRFSFEGLPPGTYTLRVSAPGY   59 (82)
T ss_dssp             T-EEEET--TTTECCEEE--TTSEEEEEEE-SEEEEEEEEBTTE
T ss_pred             CEEEEEEEeeCCCEEEEEECCCceEEEEccCCEeEEEEEEECCc
Confidence            67888888888877766667799999997777999988865543

>PRK12812 flgD flagellar basal body rod modification protein; Reviewed

Probab=81.06  E-value=23  Score=27.49  Aligned_cols=57  Identities=14%  Similarity=0.138  Sum_probs=39.4

Q ss_pred             cEEEEEEEEEcCCCCCCCCCCceEEEEEeCCCCCeEEeee--ccccceEEEEeec---------cCceeEEEEecc
Q 031159           42 SMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYAD--RVDSGQFAFTAAE---------AGDYMACFWAVD  106 (164)
Q Consensus        42 ~~v~~~y~v~~~~~~~~~~~~~~i~~~v~dp~g~~l~~~~--~~~~g~~~f~~~~---------~G~y~~Cf~n~~  106 (164)
                      ..+.+.|.+...        ...+.+.|+|..|++|..-.  ....|.+.|.-..         .|.|++=+....
T Consensus       128 ~~~~~~~~l~~~--------a~~v~v~I~D~~G~~V~t~~lg~~~aG~~~f~WDG~d~~G~~~~~G~Yt~~v~A~~  195 (259)
T PRK12812        128 ELIALKLYFPED--------SDEGTLEIYDSNNKLVEKIDFKEISQGLFTMEWDGRDNDGVYAGDGEYTIKAVYNN  195 (259)
T ss_pred             ceeEEEEecCCc--------CceEEEEEEeCCCCEEEEEecCCCCCcceeEEECCCCCCCCcCCCeeeEEEEEEEc
Confidence            355666665332        34799999999999997643  3446766666543         699999887544

>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo

Probab=81.04  E-value=8.6  Score=24.24  Aligned_cols=21  Identities=10%  Similarity=0.071  Sum_probs=13.7

Q ss_pred             CCceEEEEEeCCCCCeEEeee
Q 031159           61 ESHKLTVRVTSAYGNSYHYAD   81 (164)
Q Consensus        61 ~~~~i~~~v~dp~g~~l~~~~   81 (164)
                      ++...+|.|.|+.|+.|+.+.
T Consensus        22 sgq~~D~~v~d~~g~~vwrwS   42 (82)
T PF12690_consen   22 SGQRYDFVVKDKEGKEVWRWS   42 (82)
T ss_dssp             SS--EEEEEE-TT--EEEETT
T ss_pred             CCCEEEEEEECCCCCEEEEec
Confidence            467899999999999999864

It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.

>PRK12813 flgD flagellar basal body rod modification protein; Reviewed

Probab=80.71  E-value=10  Score=28.73  Aligned_cols=59  Identities=15%  Similarity=0.116  Sum_probs=38.8

Q ss_pred             CcEEEEEEEEEcCCCCCCCCCCceEEEEEeCCCCCeEEeeec-cccceEEEEe-------eccCceeEEEEeccC
Q 031159           41 NSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYADR-VDSGQFAFTA-------AEAGDYMACFWAVDH  107 (164)
Q Consensus        41 ~~~v~~~y~v~~~~~~~~~~~~~~i~~~v~dp~g~~l~~~~~-~~~g~~~f~~-------~~~G~y~~Cf~n~~~  107 (164)
                      +..+.+.|.+...        ...+.+.|+|.+|++|+...- .-.+.|.+.-       ...|.|.+=......
T Consensus       110 g~~~~~~~~l~~~--------a~~v~v~I~D~~G~vV~t~~~~~G~~~f~WDG~d~~G~~l~~G~Yt~~V~A~~~  176 (223)
T PRK12813        110 GTPVTISPNPAAD--------ADKAELVVRDAAGAEVARETVPVGAGPVEWAGEDADGNPLPNGAYSFVVESYSG  176 (223)
T ss_pred             CceeEEEEeccCC--------CceEEEEEEcCCCCEEEEEeeCCCceeEEeCCcCCCCCcCCCccEEEEEEEEeC
Confidence            4466777766443        347999999999999976532 1234455542       225999998876643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	164
1olm_A	403	SEC14-like protein 2; lipid-binding protein, chole	96.79
2dj4_A	108	Filamin-B; beta-sandwich, immunoglobulin-like fold	93.01
2p9r_A	102	Alpha-2-M, alpha-2-macroglobulin; human alpha2-mac	91.72
2d7m_A	115	Filamin-C; beta-sandwich, immunoglobulin-like fold	91.48
3rgh_A	100	Filamin-A; cell adhesion, cytoskeleton-complex, di	91.46
4dzg_A	114	PLIG; lysozyme inhibitor, G-type lysozyme binding,	91.44
1v05_A	96	Filamin C; actin-binding protein, immunoglobulin;	90.42
2dmb_A	124	Filamin-B; beta-sandwich, immunoglobulin-like fold	90.26
2ee6_A	105	Filamin-B; beta-sandwich, immunoglobulin-like fold	90.16
2d7n_A	93	Filamin-C; beta-sandwich, immunoglobulin-like fold	89.64
2dlg_A	102	Filamin-B; beta-sandwich, immunoglobulin-like fold	89.06
2nqc_A	138	Filamin-C; immunoglobulin, metal binding, immune s	88.83
2ee9_A	95	Filamin-B; beta-sandwich, immunoglobulin-like fold	88.82
4g9s_B	111	Inhibitor of G-type lysozyme, goose-type lysozyme;	87.8
2w0p_A	94	Filamin-A; alternative splicing, cytoskeleton/comp	87.75
3d33_A	108	Domain of unknown function with AN immunoglobulin	87.07
2dic_A	105	Filamin-B; beta-sandwich, immunoglobulin-like fold	86.2
3osv_A	138	Flagellar basal-BODY ROD modification protein FLG;	86.06
4b7l_A	347	Filamin-B; structural protein, FR 1 filamin hinge	86.05
3cnk_A	89	Filamin-A; FLNA24, X-RAY crystalography, homodimer	85.76
2e9j_A	119	Filamin-B; beta-sandwich, immunoglobulin-like fold	84.87
4fxk_A	656	Complement C4 beta chain; immune system, proteolyt	84.64
2bp3_A	97	Filamin A; structural protein, cytoskeleton/comple	84.22
2dia_A	113	Filamin-B; beta-sandwich, immunoglobulin-like fold	83.44
3irp_X	429	URO-adherence factor A; DEV-IGG fold, cell WALL, h	81.68
2d7p_A	112	Filamin-C; beta-sandwich, immunoglobulin-like fold	81.58
2dmc_A	116	Filamin-B; beta-sandwich, immunoglobulin-like fold	81.26
2eea_A	115	Filamin-B; beta-sandwich, immunoglobulin-like fold	81.13
2eec_A	125	Filamin-B; beta-sandwich, immunoglobulin-like fold	80.96
2hr0_A	645	Complement C3 beta chain; complement component C3B	80.37

>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*

Probab=96.79  E-value=0.016  Score=46.12  Aligned_cols=90  Identities=10%  Similarity=0.088  Sum_probs=61.2

Q ss_pred             EEEEeCCccceeceecc-CCcEEEEEEEEEcCCCCCCCCCCceEEEEEe-C----CC---CC--eEEeeecc----ccce
Q 031159           23 RFEIQSAHTKCIAEDIK-SNSMTVGKYNVVNPNDGHPLPESHKLTVRVT-S----AY---GN--SYHYADRV----DSGQ   87 (164)
Q Consensus        23 ~f~i~~~~~~Cf~e~v~-~~~~v~~~y~v~~~~~~~~~~~~~~i~~~v~-d----p~---g~--~l~~~~~~----~~g~   87 (164)
                      .+.|.+|+...+--.+. ++..+...|.+.++          +|.|.|+ .    +.   |.  .+......    .-..
T Consensus       281 ~~~V~~g~~~~v~~~v~~~g~~l~W~f~~~~~----------DI~F~v~~~~~~~~~~~~~~~~~v~p~~r~~~~~~~~~  350 (403)
T 1olm_A          281 SVQISRGSSHQVEYEILFPGCVLRWQFMSDGA----------DVGFGIFLKTKMGERQRAGEMTEVLPNQRYNSHLVPED  350 (403)
T ss_dssp             EEEECTTCEEEEEEEECSTTCEEEEEEEESSS----------CEEEEEEEC----CCCCGGGSEEEEEEEEECTTTSCEE
T ss_pred             EEEEcCCCEEEEEEEEcCCCCEEEEEEEecCC----------cEEEEEEEecccccccCCCcceEEeeeeeecCcccccc
Confidence            38889999888888886 68889999988432          5666666 1    11   21  33322111    1123


Q ss_pred             EEEEeeccCceeEEEEeccCCCCceEEEEEEEeecc
Q 031159           88 FAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTGV  123 (164)
Q Consensus        88 ~~f~~~~~G~y~~Cf~n~~~~~~~~~~V~f~~~~g~  123 (164)
                      -+|.....|.|.++|+|+.|. ...++|.+.+.+-.
T Consensus       351 G~~~~~~~G~y~l~fdNs~S~-~~~k~l~y~v~v~~  385 (403)
T 1olm_A          351 GTLTCSDPGIYVLRFDNTYSF-IHAKKVNFTVEVLL  385 (403)
T ss_dssp             EEEECCSCEEEEEEEECTTCC-CCSEEEEEEEEEEC
T ss_pred             CEEEcCCCeEEEEEEeccccc-eeceEEEEEEEEeC
Confidence            457799999999999999885 56688888887643

>2dj4_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=93.01  E-value=0.63  Score=29.88  Aligned_cols=86  Identities=19%  Similarity=0.300  Sum_probs=48.1

Q ss_pred             EeCCccceeceeccCCc--EEEEEEEEEcCCCCCCCCCCceEEEEEeCCCCCeEEee-eccccc--eEEEEeeccCceeE
Q 031159           26 IQSAHTKCIAEDIKSNS--MTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYA-DRVDSG--QFAFTAAEAGDYMA  100 (164)
Q Consensus        26 i~~~~~~Cf~e~v~~~~--~v~~~y~v~~~~~~~~~~~~~~i~~~v~dp~g~~l~~~-~~~~~g--~~~f~~~~~G~y~~  100 (164)
                      +.|..-+|...-+..+.  ....+|.|.....+     +..+.+.|.+|.|..+.-. .+...|  ..+|+....|.|.+
T Consensus         9 ~d~sk~~v~G~Gl~~~v~~~~~~~F~V~~~~aG-----~~~l~V~i~~p~g~~~~~~v~d~~dGty~v~Y~p~~~G~y~i   83 (108)
T 2dj4_A            9 VDPSKVKIAGPGLGSGVRARVLQSFTVDSSKAG-----LAPLEVRVLGPRGLVEPVNVVDNGDGTHTVTYTPSQEGPYMV   83 (108)
T ss_dssp             CCTTSCEEESTTTSSCCBTTSCEEEEEECTTTC-----SCCEEEEEECSSSCEECCCCEECSSSEEEEEECCSSCEEEEE
T ss_pred             cccceeEEECCCcCcCccCCccEEEEEEECCCC-----CceEEEEEECCCCCEeeeEEEECCCCEEEEEEEeCCCeeEEE
Confidence            34555555544443321  12235556544332     4578999999999654322 223344  45577788899999


Q ss_pred             EEEeccCC-CCceEEEE
Q 031159          101 CFWAVDHS-PQTTVTID  116 (164)
Q Consensus       101 Cf~n~~~~-~~~~~~V~  116 (164)
                      .+.-.... ...+..|.
T Consensus        84 ~V~~~g~~V~gSPF~v~  100 (108)
T 2dj4_A           84 SVKYADEEIPRSPFKVK  100 (108)
T ss_dssp             EEEESSSBCTTCSEEEE
T ss_pred             EEEECCEECCCCCEEEE
Confidence            88755433 34444443

>2p9r_A Alpha-2-M, alpha-2-macroglobulin; human alpha2-macroglobulin, Mg2 domain, X-RAY, signaling protein; 2.30A {Homo sapiens}

Probab=91.72  E-value=1.6  Score=27.45  Aligned_cols=65  Identities=15%  Similarity=0.093  Sum_probs=39.9

Q ss_pred             cCCcEEEEEEEEEcCCCCCCCCC-CceEEEEEeCCCCCeEEeeecc--ccceEE--EEee---ccCceeEEEEecc
Q 031159           39 KSNSMTVGKYNVVNPNDGHPLPE-SHKLTVRVTSAYGNSYHYADRV--DSGQFA--FTAA---EAGDYMACFWAVD  106 (164)
Q Consensus        39 ~~~~~v~~~y~v~~~~~~~~~~~-~~~i~~~v~dp~g~~l~~~~~~--~~g~~~--f~~~---~~G~y~~Cf~n~~  106 (164)
                      .+++.|.+..-+.+...   .|. ...+.+.|.||+|+.+.++...  ..|.++  |...   ..|.|++......
T Consensus        14 rPGetV~~~~~~~~~~~---~p~~~~~~~v~l~dp~g~~v~~~~~~~~~~G~~~~~f~Lp~~~~~G~y~i~~~~~~   86 (102)
T 2p9r_A           14 KPGQTVKFRVVSMDENF---HPLNELIPLVYIQDPKGNRIAQWQSFQLEGGLKQFSFPLSSEPFQGSYKVVVQKKS   86 (102)
T ss_dssp             CTTCEEEEEEEEECGGG---CBCCCEEEEEEEECTTSCEEEEEEEEECBTTEEEEEEECCSSCCCEEEEEEEECTT
T ss_pred             CCCCEEEEEEEEECCCC---cCCCCCceEEEEECCCCCEEEEEEeecCCCCEEEEEEECCCCCCCeeEEEEEEECC
Confidence            45676766655554321   222 3347899999999998875322  245443  3332   3599999988653

>2d7m_A Filamin-C; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=91.48  E-value=1.6  Score=28.23  Aligned_cols=55  Identities=16%  Similarity=0.226  Sum_probs=35.6

Q ss_pred             CceEEEEEeCCCCCeEEee-eccccc--eEEEEeeccCceeEEEEeccCC-CCceEEEE
Q 031159           62 SHKLTVRVTSAYGNSYHYA-DRVDSG--QFAFTAAEAGDYMACFWAVDHS-PQTTVTID  116 (164)
Q Consensus        62 ~~~i~~~v~dp~g~~l~~~-~~~~~g--~~~f~~~~~G~y~~Cf~n~~~~-~~~~~~V~  116 (164)
                      ...+.+.|.+|.|+.+... .+...|  ..+|+....|.|.+.+.-.... ...+..|.
T Consensus        43 ~~~l~V~v~~p~g~~~~~~v~d~~dGty~v~Y~p~~~G~y~i~V~~~g~~I~gSPF~v~  101 (115)
T 2d7m_A           43 EGLLTVQILDPEGKPKKANIRDNGDGTYTVSYLPDMSGRYTITIKYGGDEIPYSPFRIH  101 (115)
T ss_dssp             SSCEEEEEECTTSCBCCEEEEECSSSCEEEEECCCSCEEEEEEEEESSCBCTTCSEEEE
T ss_pred             CCEEEEEEECCCCCeeeeEEEECCCCEEEEEEEeCCCceEEEEEEECCEECCCCCEEEE
Confidence            4578899999998744322 223344  5567888899999988765443 34454444

>3rgh_A Filamin-A; cell adhesion, cytoskeleton-complex, disease mutation, immun like, cytoskeleton, actin-binding, cell junction, shape; HET: CME; 2.44A {Homo sapiens} SCOP: b.1.18.0

Probab=91.46  E-value=0.96  Score=28.59  Aligned_cols=54  Identities=19%  Similarity=0.255  Sum_probs=33.5

Q ss_pred             EEEEEcCCCCCCCCCCceEEEEEeCCCCCeEEee-eccccc--eEEEEeeccCceeEEEEec
Q 031159           47 KYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYA-DRVDSG--QFAFTAAEAGDYMACFWAV  105 (164)
Q Consensus        47 ~y~v~~~~~~~~~~~~~~i~~~v~dp~g~~l~~~-~~~~~g--~~~f~~~~~G~y~~Cf~n~  105 (164)
                      +|.|...+++     ...+.+.|.+|.|..+.-+ .+...|  ..+|+....|.|.+.+.-.
T Consensus        28 ~F~V~~~~aG-----~~~l~v~i~~~~g~~~~~~v~d~~dGty~V~Y~p~~~G~y~i~V~~~   84 (100)
T 3rgh_A           28 QFQVDCSSAG-----SAELTIEICSEAGLPAEVYIQDHGDGTHTITYIPLCPGAYTVTIKYG   84 (100)
T ss_dssp             EEEEECTTSC-----SCCEEEEEECTTSCBCEEEEEECSSSEEEEEEECCSSEEEEEEEEET
T ss_pred             EEEEEECCCC-----CceEEEEEECCCCCEeEEEEEeCCCCEEEEEEEeCCCeeEEEEEEEC
Confidence            4556544433     4578899999998744321 223334  4567778888888876543

>4dzg_A PLIG; lysozyme inhibitor, G-type lysozyme binding, hydrolase inhib; HET: MLY; 2.02A {Aeromonas hydrophila subsp}

Probab=91.44  E-value=0.23  Score=32.56  Aligned_cols=71  Identities=10%  Similarity=0.054  Sum_probs=49.3

Q ss_pred             EEeCCccceeceeccCCcEEEEEEEEEcCCCCCCCCCCceEEEEEeCCCCCe---EEeeeccccceEEEEeeccCceeEE
Q 031159           25 EIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNS---YHYADRVDSGQFAFTAAEAGDYMAC  101 (164)
Q Consensus        25 ~i~~~~~~Cf~e~v~~~~~v~~~y~v~~~~~~~~~~~~~~i~~~v~dp~g~~---l~~~~~~~~g~~~f~~~~~G~y~~C  101 (164)
                      .|.+++...+.-.+.++..+.+..   ++        +..+-|.|.+|+++.   ++.......+.|+-+.+.+|.|++=
T Consensus        23 ~I~g~~~~~Y~~~a~aGQ~l~V~l---s~--------~~~~~f~I~~P~~~~~~~l~~g~~~~~~~~~g~LP~sG~Y~i~   91 (114)
T 4dzg_A           23 SFTGYDTIHYTLVAXAGQTMTVXI---GG--------SSNANFNVFAPGAQPGQAEAIGRNDGDGQWQGALPASGXYLIQ   91 (114)
T ss_dssp             CCBTTCCEEEECCC-CCCEEEC-C---EE--------STTCEEEEECTTCCTTTSCCSEECCTTSCCEEECSSCC-CEEE
T ss_pred             EecCCCceEEEEEecCCCEEEEEe---CC--------CCcEEEEEECCCCCcccceeccccCCcceEEEEecCCCcEEEE
Confidence            577778888888888888877664   22        235677899999874   3433333346899999999999998


Q ss_pred             EEecc
Q 031159          102 FWAVD  106 (164)
Q Consensus       102 f~n~~  106 (164)
                      +....
T Consensus        92 V~~~r   96 (114)
T 4dzg_A           92 VYQMR   96 (114)
T ss_dssp             EECCH
T ss_pred             EEecc
Confidence            88663

>1v05_A Filamin C; actin-binding protein, immunoglobulin; 1.43A {Homo sapiens} SCOP: b.1.18.10 PDB: 2eed_A

Probab=90.42  E-value=0.89  Score=28.38  Aligned_cols=75  Identities=15%  Similarity=0.214  Sum_probs=40.1

Q ss_pred             eCCccceeceeccCC-cEEEEEEEEEcCCCCCCCCCCceEEEEEeCCCCCeEE-eeeccccc--eEEEEeeccCceeEEE
Q 031159           27 QSAHTKCIAEDIKSN-SMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYH-YADRVDSG--QFAFTAAEAGDYMACF  102 (164)
Q Consensus        27 ~~~~~~Cf~e~v~~~-~~v~~~y~v~~~~~~~~~~~~~~i~~~v~dp~g~~l~-~~~~~~~g--~~~f~~~~~G~y~~Cf  102 (164)
                      .|.+-+|...-+... .....+|.|...+++     ...+.+.|.+|.|..+. +-.+...|  ..+|+....|.|.+.+
T Consensus         5 d~~k~~~~G~Gl~~~~~g~~~~F~v~~~~aG-----~~~l~v~v~~p~~~~~~~~v~d~~dGty~v~Y~p~~~G~y~i~V   79 (96)
T 1v05_A            5 DASKVVTRGPGLSQAFVGQKNSFTVDCSKAG-----TNMMMVGVHGPKTPCEEVYVKHMGNRVYNVTYTVKEKGDYILIV   79 (96)
T ss_dssp             CGGGCEEESGGGTBCCTTSCEEEEEECTTSB-----SCCEEEEEECSSSCCSEEEEEECSTTEEEEEEECSSCEEEEEEE
T ss_pred             CchheEEECCCcCCEEcCCCEEEEEEEeCCC-----CCcEEEEEECCCCCeeEEEEEeCCCCEEEEEEEeCCCEEEEEEE
Confidence            344444444434332 112334555543322     44788889999986321 11222334  4557778888888877


Q ss_pred             Eecc
Q 031159          103 WAVD  106 (164)
Q Consensus       103 ~n~~  106 (164)
                      .-..
T Consensus        80 ~~~g   83 (96)
T 1v05_A           80 KWGD   83 (96)
T ss_dssp             EETT
T ss_pred             EECC
Confidence            7443

>2dmb_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=90.26  E-value=2.7  Score=27.64  Aligned_cols=55  Identities=22%  Similarity=0.284  Sum_probs=35.6

Q ss_pred             CceEEEEEeCCCCCeEEee-eccccc--eEEEEeeccCceeEEEEeccCC-CCceEEEE
Q 031159           62 SHKLTVRVTSAYGNSYHYA-DRVDSG--QFAFTAAEAGDYMACFWAVDHS-PQTTVTID  116 (164)
Q Consensus        62 ~~~i~~~v~dp~g~~l~~~-~~~~~g--~~~f~~~~~G~y~~Cf~n~~~~-~~~~~~V~  116 (164)
                      ...+.+.|.+|+|..+..+ .+...|  ...|+....|.|.+++.-.... .+.+..|.
T Consensus        42 ~~~l~V~I~~p~g~~v~~~v~d~~dGty~V~Y~p~~~G~y~I~V~~~g~~I~gSPF~v~  100 (124)
T 2dmb_A           42 KGKVTCTVLTPDGTEAEADVIENEDGTYDIFYTAAKPGTYVIYVRFGGVDIPNSPFTVM  100 (124)
T ss_dssp             SCCEEEEEECTTSCBCCCEEEECTTSCEEEEEECSSCEEEEEEEEESSCBCTTCSEEEE
T ss_pred             CCcEEEEEECCCCCEEeeEEEeCCCCEEEEEEEcCCCEEEEEEEEECCEECCCCCeEEE
Confidence            4578899999998654321 222334  5668888899999998755433 34454444

>2ee6_A Filamin-B; beta-sandwich, immunoglobulin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=90.16  E-value=2.4  Score=26.88  Aligned_cols=54  Identities=19%  Similarity=0.294  Sum_probs=35.7

Q ss_pred             CceEEEEEeCCCCCeEEeeeccccc--eEEEEeeccCceeEEEEeccCC-CCceEEEE
Q 031159           62 SHKLTVRVTSAYGNSYHYADRVDSG--QFAFTAAEAGDYMACFWAVDHS-PQTTVTID  116 (164)
Q Consensus        62 ~~~i~~~v~dp~g~~l~~~~~~~~g--~~~f~~~~~G~y~~Cf~n~~~~-~~~~~~V~  116 (164)
                      ...+.+.|.+|.+..+ +-.+...|  ..+|+....|.|.+++.-.... ...+..|.
T Consensus        41 ~~~l~v~v~~p~~~~v-~v~d~~dGty~v~Y~p~~~G~y~I~V~~~g~~I~gSPF~v~   97 (105)
T 2ee6_A           41 AGGLSIAVEGPSKAEI-TFDDHKNGSCGVSYIAQEPGNYEVSIKFNDEHIPESPYLVP   97 (105)
T ss_dssp             CCCEEEEEESSSCEEE-EECCCCSSCCCEEEEESSCEEEEEEEEETTEECTTCSEEEE
T ss_pred             CCcEEEEEECCCCCEE-EEEECCCCEEEEEEEECCCceEEEEEEECCEECCCcCEEEE
Confidence            4478888999998655 22333444  6788888999999988754432 34454443

>2d7n_A Filamin-C; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=89.64  E-value=2.1  Score=26.74  Aligned_cols=55  Identities=13%  Similarity=0.059  Sum_probs=36.9

Q ss_pred             CceEEEEEeCCCCCeEEee-ecccc--ceEEEEeeccCceeEEEEeccCC-CCceEEEE
Q 031159           62 SHKLTVRVTSAYGNSYHYA-DRVDS--GQFAFTAAEAGDYMACFWAVDHS-PQTTVTID  116 (164)
Q Consensus        62 ~~~i~~~v~dp~g~~l~~~-~~~~~--g~~~f~~~~~G~y~~Cf~n~~~~-~~~~~~V~  116 (164)
                      ..++.+.|.+|+|+.+... .+...  =...|+..+.|.|.+++.-.... .+.+..|.
T Consensus        21 ~~~l~v~V~~PsG~~~~~~v~d~~dGtY~v~ytP~e~G~h~v~V~~~g~~I~GSPF~v~   79 (93)
T 2d7n_A           21 KGELTGEVRMPSGKTARPNITDNKDGTITVRYAPTEKGLHQMGIKYDGNHIPGSPLQFY   79 (93)
T ss_dssp             SSCEEEEEECTTSCEECCEEEECSSSCEEEEECCSSCEEEEEEEEESSSCCTTCSEEEE
T ss_pred             CCCEEEEEECCCCCccceEEEECCCCEEEEEEEccCCEEEEEEEEECCEeCCCCCeEEE
Confidence            3478899999999854321 22233  46678889999999998866544 34554444

>2dlg_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=89.06  E-value=1.2  Score=28.41  Aligned_cols=54  Identities=15%  Similarity=0.114  Sum_probs=36.0

Q ss_pred             CceEEEEEeCCCCCeEEee-eccccc--eEEEEeeccCceeEEEEeccCC-CCceEEE
Q 031159           62 SHKLTVRVTSAYGNSYHYA-DRVDSG--QFAFTAAEAGDYMACFWAVDHS-PQTTVTI  115 (164)
Q Consensus        62 ~~~i~~~v~dp~g~~l~~~-~~~~~g--~~~f~~~~~G~y~~Cf~n~~~~-~~~~~~V  115 (164)
                      ...+.+.|.+|+|..+-.. .+...|  ..+|+..+.|.|.+.+.-.... .+.+..|
T Consensus        30 ~~~l~v~v~~P~G~~~~~~v~d~~dGty~v~ytP~e~G~h~v~V~~~g~~I~GSPF~v   87 (102)
T 2dlg_A           30 SSDMSAHVTSPSGRVTEAEIVPMGKNSHCVRFVPQEMGVHTVSVKYRGQHVTGSPFQF   87 (102)
T ss_dssp             GGGCEEEEECTTSCEEECEEEECSSSEEEEEBCCCTTCEEEEEEESSSSBCSSCSEEE
T ss_pred             CCCEEEEEECCCCCEeeeEEEECCCCEEEEEEEecCCEeEEEEEEECCEeCCCCCeEE
Confidence            4578999999999865432 223344  5567889999999988755543 3445333

>2nqc_A Filamin-C; immunoglobulin, metal binding, immune system; 2.05A {Homo sapiens} SCOP: b.1.18.10 PDB: 2d7q_A 2k3t_A

Probab=88.83  E-value=3.9  Score=27.49  Aligned_cols=66  Identities=14%  Similarity=0.197  Sum_probs=40.1

Q ss_pred             EEEEEEcCCCCCCCCCCceEEEEEeCCCCCeEEeeeccccceEEEEeeccCceeEEEEecc-CC-CCceEEEE
Q 031159           46 GKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAVD-HS-PQTTVTID  116 (164)
Q Consensus        46 ~~y~v~~~~~~~~~~~~~~i~~~v~dp~g~~l~~~~~~~~g~~~f~~~~~G~y~~Cf~n~~-~~-~~~~~~V~  116 (164)
                      .+|.|...+.+     ...+.+.|.+|++..+--.+....=..+|+....|.|.+.+.-.. .. ..++..|.
T Consensus        64 ~~F~V~t~daG-----~g~l~v~I~gPs~~~~~~~d~~dGy~V~YtP~~~G~y~I~Vk~~g~~hI~GSPF~v~  131 (138)
T 2nqc_A           64 SEFIVNTLNAG-----SGALSVTIDGPSKVQLDCRECPEGHVVTYTPMAPGNYLIAIKYGGPQHIVGSPFKAK  131 (138)
T ss_dssp             EEEEEECTTSC-----SCCEEEEEESSSCCEEEEEEETTEEEEEEECCSCEEEEEEEEESSSCBCTTCSEEEE
T ss_pred             eEEEEEEcCCC-----CCcEEEEEECCCCCeeeEEECCCcEEEEEEcCCCEEEEEEEEECCcccCCCCCeEEE
Confidence            35666654432     447888999999875432222211466788888999998877544 32 34454444

>2ee9_A Filamin-B; beta-sandwich, immunoglobulin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=88.82  E-value=1.8  Score=27.22  Aligned_cols=54  Identities=13%  Similarity=0.153  Sum_probs=35.7

Q ss_pred             CceEEEEEeCCCCCeEEee-eccccc--eEEEEeeccCceeEEEEeccCC-CCceEEE
Q 031159           62 SHKLTVRVTSAYGNSYHYA-DRVDSG--QFAFTAAEAGDYMACFWAVDHS-PQTTVTI  115 (164)
Q Consensus        62 ~~~i~~~v~dp~g~~l~~~-~~~~~g--~~~f~~~~~G~y~~Cf~n~~~~-~~~~~~V  115 (164)
                      ..++.+.|.+|+|+.+-.. .+...|  ...|+..+.|.|.+++.-.... .+.+..|
T Consensus        29 ~~~ltv~V~~PsG~~~~~~v~d~~dGtY~v~ytP~e~G~h~v~V~~~G~~I~GSPF~v   86 (95)
T 2ee9_A           29 KGEITGEVHMPSGKTATPEIVDNKDGTVTVRYAPTEVGLHEMHIKYMGSHIPESPLQF   86 (95)
T ss_dssp             TTSEEEEEECTTSCEECCEEEECSSSCEEEECCCCSSEEEEEEEEESSCBCTTCSEEE
T ss_pred             CCCEEEEEECCCCCccccEEEeCCCCeEEEEEEecCCEeEEEEEEECCEECCCCCeEE
Confidence            4589999999999864321 222334  5667888999999998866543 3444333

>4g9s_B Inhibitor of G-type lysozyme, goose-type lysozyme; hydrolase inhibitor, hydrolase-hydrolase inhibitor; HET: FLC; 0.95A {Escherichia coli} PDB: 4dy3_A* 4dxz_A* 4dy5_A

Probab=87.80  E-value=2.8  Score=26.91  Aligned_cols=87  Identities=9%  Similarity=-0.026  Sum_probs=56.1

Q ss_pred             EEEEEeCCccceeceeccCCcEEEEEEEEEcCCCCCCCCCCceEEEEEeCCCCCeEEee---eccccceEEEEeeccCce
Q 031159           22 LRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYA---DRVDSGQFAFTAAEAGDY   98 (164)
Q Consensus        22 ~~f~i~~~~~~Cf~e~v~~~~~v~~~y~v~~~~~~~~~~~~~~i~~~v~dp~g~~l~~~---~~~~~g~~~f~~~~~G~y   98 (164)
                      +.=.|.+++...+.-.+.++..+.++  +...          ...+.|..|.+......   ......++..+.+.+|.|
T Consensus        18 v~G~I~g~~~~~Y~~~a~aGQ~l~v~--l~s~----------~~~~~i~~pg~~~~~~~~~~~~~~~~~~~~~LP~sG~Y   85 (111)
T 4g9s_B           18 YSGEIKGYDYDTYTFYAKKGQKVHVS--ISNE----------GADTYLFGPGIDDSVDLSRYSPELDSHGQYSLPASGKY   85 (111)
T ss_dssp             EEEEEETTCCEEEEEEECTTCEEEEE--ESCT----------TCEEEEECTTCSSCEECSTTCTTCCTTSCEECSSSEEE
T ss_pred             EEEEEeCCCceEEEEEecCCCEEEEE--EecC----------CccEEEECCCCccccccccccccCCceEEEEecCCccE
Confidence            34478888888988889999988776  3222          23456888877653322   122345788899999999


Q ss_pred             eEEEEeccCC--CCceEEEEEEEe
Q 031159           99 MACFWAVDHS--PQTTVTIDFDWR  120 (164)
Q Consensus        99 ~~Cf~n~~~~--~~~~~~V~f~~~  120 (164)
                      .+=+....+.  .+......|+++
T Consensus        86 ~I~V~~~r~~ar~~~~~~Y~L~v~  109 (111)
T 4g9s_B           86 ELRVLQTRNDARKNKTKKYNVDIQ  109 (111)
T ss_dssp             EEEEECCHHHHHTTCEEEEEEEEE
T ss_pred             EEEEEeccchhccCCCcCEEEEEE
Confidence            9988754321  233444444443

>2w0p_A Filamin-A; alternative splicing, cytoskeleton/complex, phosphoprotein, disease mutation, immunoglobulin like, zinc, complex; 1.90A {Homo sapiens} SCOP: b.1.18.10 PDB: 2brq_A* 2jf1_A 3isw_A

Probab=87.75  E-value=3.4  Score=25.53  Aligned_cols=53  Identities=17%  Similarity=0.318  Sum_probs=32.7

Q ss_pred             ceEEEEEeCCCCCeEEeeeccccc--eEEEEeeccCceeEEEEeccCC-CCceEEEE
Q 031159           63 HKLTVRVTSAYGNSYHYADRVDSG--QFAFTAAEAGDYMACFWAVDHS-PQTTVTID  116 (164)
Q Consensus        63 ~~i~~~v~dp~g~~l~~~~~~~~g--~~~f~~~~~G~y~~Cf~n~~~~-~~~~~~V~  116 (164)
                      ..+.+.|.+|.+..+.-. +...|  ..+|+....|.|.+.+.-.... ..++..|.
T Consensus        34 ~~~~v~v~gp~~~~~~v~-d~~dGty~v~Y~p~~~G~y~I~V~~~g~~I~gSPF~v~   89 (94)
T 2w0p_A           34 GGLAIAVEGPSKAEISFE-DRKDGSCGVAYVVQEPGDYEVSVKFNEEHIPDSPFVVP   89 (94)
T ss_dssp             CCEEEEEEESSCCEEEEE-ECTTSCEEEEEECSSCEEEEEEEEETTEECTTCSEEEE
T ss_pred             CcEEEEEECCCCCeEEEE-ECCCCEEEEEEEECCCceEEEEEEECCEECCCCCEEEE
Confidence            367788889988644322 22334  5678888889999888754322 23444443

>3d33_A Domain of unknown function with AN immunoglobulin beta-sandwich fold; structural genomics, joint center for structural genomics; HET: MSE; 1.70A {Bacteroides vulgatus atcc 8482}

Probab=87.07  E-value=2.9  Score=27.01  Aligned_cols=56  Identities=20%  Similarity=0.196  Sum_probs=39.9

Q ss_pred             CcEEEEEEEEEcCCCCCCCCCCceEEEEEe-CCCCCeEEeeecccc--ceEEEEee--ccCceeEEEEecc
Q 031159           41 NSMTVGKYNVVNPNDGHPLPESHKLTVRVT-SAYGNSYHYADRVDS--GQFAFTAA--EAGDYMACFWAVD  106 (164)
Q Consensus        41 ~~~v~~~y~v~~~~~~~~~~~~~~i~~~v~-dp~g~~l~~~~~~~~--g~~~f~~~--~~G~y~~Cf~n~~  106 (164)
                      +..+.++|..  .        ...+.++|. |..|+++|++.-...  ..+.+...  ..|.|.+=+.+..
T Consensus        37 ~~~L~I~F~~--~--------~~~vtItI~~~~tG~iVY~~~v~~~~~~~~~I~L~~~~~G~Y~L~i~~~~   97 (108)
T 3d33_A           37 GYLLTLKNAS--P--------DRDMTIRITDMAKGGVVYENDIPEVQSAYITISIANFPAEEYKLEITGTP   97 (108)
T ss_dssp             TTEEEEEESS--C--------CSEEEEEEEETTTCCEEEEEEECGGGTTEEEEECTTSCSEEEEEEEEEES
T ss_pred             CCEEEEEECC--c--------CCCEEEEEEECCCCcEEEEEeecCCCCcEEEEEcCCccCceEEEEEEeCC
Confidence            4566666622  1        458999999 889999998754333  45566665  5799999998884

>2dic_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=86.20  E-value=4.7  Score=25.51  Aligned_cols=64  Identities=16%  Similarity=0.221  Sum_probs=38.1

Q ss_pred             EEEEEcCCCCCCCCCCceEEEEEeCCCCCeEEeeeccccc--eEEEEeeccCceeEEEEeccCC-CCceEEEE
Q 031159           47 KYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYADRVDSG--QFAFTAAEAGDYMACFWAVDHS-PQTTVTID  116 (164)
Q Consensus        47 ~y~v~~~~~~~~~~~~~~i~~~v~dp~g~~l~~~~~~~~g--~~~f~~~~~G~y~~Cf~n~~~~-~~~~~~V~  116 (164)
                      +|.|...+++     ...+.+.|.+|.+..+.-. +...|  ..+|+....|.|.+.+.-.... .+.+..+.
T Consensus        31 ~F~v~t~dag-----~g~l~v~v~gp~~~~~~v~-d~~dGty~v~Y~p~~~G~y~I~V~~~g~~I~gSPF~v~   97 (105)
T 2dic_A           31 VFTVVTRGAG-----IGGLGITVEGPSESKINCR-DNKDGSCSAEYIPFAPGDYDVNITYGGAHIPGSPFRVP   97 (105)
T ss_dssp             EEEEECTTTC-----SSCEEEEEESSSCCCCEEE-ECSSSCEEEEECCSSCEEEEEEEEETTEECTTCSEEEE
T ss_pred             EEEEEEccCC-----CCceEEEEECCCCCeEEEE-ECCCCeEEEEEEeCCCeEEEEEEEECCEECCCCCEEEE
Confidence            4555544322     3467888899988644322 23344  5678888889999988754432 24444433

>3osv_A Flagellar basal-BODY ROD modification protein FLG; FLGD, flagellum, P. aeruginosa, structural protein; 2.35A {Pseudomonas aeruginosa}

Probab=86.06  E-value=4.4  Score=27.10  Aligned_cols=56  Identities=16%  Similarity=0.109  Sum_probs=38.2

Q ss_pred             EEEEEEEEEcCCCCCCCCCCceEEEEEeCCCCCeEEeee--ccccceEEEEee---------ccCceeEEEEecc
Q 031159           43 MTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYAD--RVDSGQFAFTAA---------EAGDYMACFWAVD  106 (164)
Q Consensus        43 ~v~~~y~v~~~~~~~~~~~~~~i~~~v~dp~g~~l~~~~--~~~~g~~~f~~~---------~~G~y~~Cf~n~~  106 (164)
                      .+.+.|.+...        ...+.+.|+|.+|+++.+-.  ..+.|.+.|+-.         ..|.|++-+....
T Consensus        25 ~~~~~~~l~~~--------a~~v~v~I~d~~G~~V~t~~~g~~~aG~~~f~WDG~d~~G~~~~~G~Y~~~v~a~~   91 (138)
T 3osv_A           25 TFKASLNLPVS--------SSNVWVNVYDDKGTVVNRINLGQQAAGSVSFMWDGKDSSGNIMPPGTYKFEAQTSI   91 (138)
T ss_dssp             CEEEEEEESBC--------EEEEEEEEECTTSCEEEEEEEEEECSEEEEEEECSBCTTSCBCCSEEEEEEEEEEE
T ss_pred             eEEEEEECCCC--------CcEEEEEEEcCCCCEEEEEEcCCcCCceEEEEECCcCCCCCCCCCccEEEEEEEEc
Confidence            45677776433        34799999999999988743  345565555442         2588999887664

>4b7l_A Filamin-B; structural protein, FR 1 filamin hinge ABD-1; 2.05A {Homo sapiens} PDB: 2wfn_A

Probab=86.05  E-value=3.7  Score=32.01  Aligned_cols=82  Identities=13%  Similarity=0.157  Sum_probs=51.4

Q ss_pred             eeEEEEEeCCccceeceeccCC---cEEEEEEEEEcCCCCCCCCCCceEEEEEeCCCCCeEEe---eeccccc--eEEEE
Q 031159           20 QSLRFEIQSAHTKCIAEDIKSN---SMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHY---ADRVDSG--QFAFT   91 (164)
Q Consensus        20 ~a~~f~i~~~~~~Cf~e~v~~~---~~v~~~y~v~~~~~~~~~~~~~~i~~~v~dp~g~~l~~---~~~~~~g--~~~f~   91 (164)
                      ..+.-...|.+.+|+.--+.+.   ..-..+|.|...++|     ...+.+.|.+|+|..+-.   ..+...|  ..+|+
T Consensus       246 ~~l~~k~~pskv~a~GpGle~~g~~vg~p~~F~Vdt~~AG-----~g~l~v~V~~P~G~~~~~~v~~~~~~~gty~v~y~  320 (347)
T 4b7l_A          246 APLKPKLNPKKARAYGRGIEPTGNMVKQPAKFTVDTISAG-----QGDVMVFVEDPEGNKEEAQVTPDSDKNKTYSVEYL  320 (347)
T ss_dssp             CCCCCSCCGGGCEEESGGGSSSCCCTTSCEEEEEECTTTC-----SCCEEEEEECTTSCEEECEEEESSTTCSEEEEEEC
T ss_pred             ccccccccccceeEEeccccccCceeCCEEEEEEEeCCCC-----CCceEEEEECCCCCeecCEEEEEcCCCCEEEEEEE
Confidence            3444456666777877777542   111346667654433     447899999999986432   2222344  45688


Q ss_pred             eeccCceeEEEEecc
Q 031159           92 AAEAGDYMACFWAVD  106 (164)
Q Consensus        92 ~~~~G~y~~Cf~n~~  106 (164)
                      ..+.|.|.+-+.-..
T Consensus       321 P~~~G~~~I~V~~~g  335 (347)
T 4b7l_A          321 PKVTGLHKVTVLFAG  335 (347)
T ss_dssp             CCSSSEEEEEEEETT
T ss_pred             ECCCEeEEEEEEECC
Confidence            899999998766443

>3cnk_A Filamin-A; FLNA24, X-RAY crystalography, homodimer, acetylation, actin-binding, cytoplasm, cytoskeleton, disease mutation, phosphoprotein; 1.65A {Homo sapiens}

Probab=85.76  E-value=4.3  Score=24.70  Aligned_cols=45  Identities=16%  Similarity=0.151  Sum_probs=28.5

Q ss_pred             CceEEEEEeCCCCCeEEe-eeccccc--eEEEEeeccCceeEEEEecc
Q 031159           62 SHKLTVRVTSAYGNSYHY-ADRVDSG--QFAFTAAEAGDYMACFWAVD  106 (164)
Q Consensus        62 ~~~i~~~v~dp~g~~l~~-~~~~~~g--~~~f~~~~~G~y~~Cf~n~~  106 (164)
                      +..+.+.|.+|.|..+.. -.+...|  ..+|+....|.|.+.+.-..
T Consensus        29 ~~~l~v~v~~p~g~~~~~~v~d~~dGty~v~Y~p~~~G~y~i~V~~~g   76 (89)
T 3cnk_A           29 NNMLLVGVHGPRTPCEEILVKHVGSRLYSVSYLLKDKGEYTLVVKWGH   76 (89)
T ss_dssp             SCCEEEEEECSSSCCSEEEEEEEETTEEEEEEECCSCEEEEEEEEETT
T ss_pred             CCcEEEEEECCCCCceeEEEEECCCCEEEEEEEECCCccEEEEEEECC
Confidence            457888899999863221 1222234  45577788888888877543

>2e9j_A Filamin-B; beta-sandwich, immunoglobulin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=84.87  E-value=3.8  Score=26.54  Aligned_cols=65  Identities=17%  Similarity=0.286  Sum_probs=38.8

Q ss_pred             EEEEEcCCCCCCCCCCceEEEEEeCCCCCeEEee-eccccc--eEEEEeeccCceeEEEEeccCC-CCceEEEE
Q 031159           47 KYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYA-DRVDSG--QFAFTAAEAGDYMACFWAVDHS-PQTTVTID  116 (164)
Q Consensus        47 ~y~v~~~~~~~~~~~~~~i~~~v~dp~g~~l~~~-~~~~~g--~~~f~~~~~G~y~~Cf~n~~~~-~~~~~~V~  116 (164)
                      +|.|...+++     ...+.+.|.+|+|..+..+ .+...|  ..+|+....|.|.+.+.-.... ...+..|.
T Consensus        43 ~F~V~~~daG-----~~~l~v~v~~p~g~~~~~~v~d~~dGty~v~Y~p~~~G~y~i~V~~~g~~V~gSPF~v~  111 (119)
T 2e9j_A           43 DFAIDARDAG-----EGLLAVQITDQEGKPKRAIVHDNKDGTYAVTYIPDKTGRYMIGVTYGGDDIPLSPYRIR  111 (119)
T ss_dssp             EEEEEESSCC-----CCCEECCEECTTCCCCCEEEEECCSSEEEEEECCCSCSEEEECCEESSCBCTTCSEEEE
T ss_pred             EEEEEECCCC-----CCeEEEEEECCCCCEEEEEEEECCCCEEEEEEEeCCCEEEEEEEEECCEECCCCCEEEE
Confidence            5556543332     4578889999998643221 223344  5567778889999987755433 24444443

>4fxk_A Complement C4 beta chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_A*

Probab=84.64  E-value=10  Score=31.50  Aligned_cols=65  Identities=15%  Similarity=0.112  Sum_probs=41.6

Q ss_pred             cCCcEEEEEEEEEcCCCCCCCCCCceEEEEEeCCCCCeEEeeeccc-cceEEEEe-----eccCceeEEEEecc
Q 031159           39 KSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYADRVD-SGQFAFTA-----AEAGDYMACFWAVD  106 (164)
Q Consensus        39 ~~~~~v~~~y~v~~~~~~~~~~~~~~i~~~v~dp~g~~l~~~~~~~-~g~~~f~~-----~~~G~y~~Cf~n~~  106 (164)
                      .+|+.|.+..-+.+.+   ..|.+..+.+.|.||+|+.+.++.... .|-|.+.-     ...|.|++-+....
T Consensus       132 rPGqtV~~r~i~~d~~---~~p~~~~~~v~i~dp~g~~v~~~~~~~~~G~~~~~f~Lp~~~~~G~w~i~v~~~~  202 (656)
T 4fxk_A          132 NPGQRVRYRVFALDQK---MRPSTDTITVMVENSHGLRVRKKEVYMPSSIFQDDFVIPDISEPGTWKISARFSD  202 (656)
T ss_dssp             CTTCEEEEEEEEECSS---SSBCCCCEEEEEECTTCCEEEEEEECCTTSEEEEEEECCTTCCSEEEEEEEEESS
T ss_pred             CCCCEEEEEEEEECCc---cCcCcccceEEEECCCCcEEeeeEEecCCceEEEEecCCCCCCCcCEEEEEEEcC
Confidence            4466666554444443   234466889999999999988764332 55554443     22599999987654

>2bp3_A Filamin A; structural protein, cytoskeleton/complex, actin binding protein, cytoskeleton, complex; 2.32A {Homo sapiens} SCOP: b.1.18.10 PDB: 2aav_A

Probab=84.22  E-value=5.5  Score=24.66  Aligned_cols=64  Identities=14%  Similarity=0.257  Sum_probs=38.5

Q ss_pred             EEEEEcCCCCCCCCCCceEEEEEeCCCCCeEEeeeccccc--eEEEEeeccCceeEEEEeccCC-CCceEEEE
Q 031159           47 KYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYADRVDSG--QFAFTAAEAGDYMACFWAVDHS-PQTTVTID  116 (164)
Q Consensus        47 ~y~v~~~~~~~~~~~~~~i~~~v~dp~g~~l~~~~~~~~g--~~~f~~~~~G~y~~Cf~n~~~~-~~~~~~V~  116 (164)
                      +|.|...+++     ...+.+.|.+|.+..+.-. +...|  ..+|+....|.|.+.+.-.... .+.+..|.
T Consensus        26 ~F~v~t~dag-----~~~l~v~v~~p~~~~~~v~-d~~dGty~v~Y~p~~~G~y~i~V~~~g~~I~gSPF~v~   92 (97)
T 2bp3_A           26 TFTVNTKDAG-----EGGLSLAIEGPSKAEISCT-DNQDGTCSVSYLPVLPGDYSILVKYNEQHVPGSPFTAR   92 (97)
T ss_dssp             EEEEECTTCC-----SEEEEEEEEESSCCEEEEE-ECSSSEEEEEEECSSCEEEEEEEEETTEECTTCSEEEE
T ss_pred             EEEEEECCCC-----CCcEEEEEECCCCCEEEEE-ECCCCEEEEEEEeCCCCcEEEEEEECCEECCCcCEEEE
Confidence            4556544322     4578888999988644322 23334  6677888889999987744322 24444444

>2dia_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=83.44  E-value=6.5  Score=25.10  Aligned_cols=56  Identities=14%  Similarity=0.200  Sum_probs=35.1

Q ss_pred             CceEEEEEeCCCCCeEEee-eccccc--eEEEEeeccCceeEEEEeccCC-CCceEEEEE
Q 031159           62 SHKLTVRVTSAYGNSYHYA-DRVDSG--QFAFTAAEAGDYMACFWAVDHS-PQTTVTIDF  117 (164)
Q Consensus        62 ~~~i~~~v~dp~g~~l~~~-~~~~~g--~~~f~~~~~G~y~~Cf~n~~~~-~~~~~~V~f  117 (164)
                      ...+.+.|.+|.|..+... .+...|  ..+|+....|.|.+.+.-.... ...+..|.+
T Consensus        41 ~~~l~v~i~~~~g~~~~~~v~d~~dGty~v~Y~p~~~G~y~i~V~~~g~~V~gSPf~v~v  100 (113)
T 2dia_A           41 PGALGLEAVSDSGTKAEVSIQNNKDGTYAVTYVPLTAGMYTLTMKYGGELVPHFPARVKV  100 (113)
T ss_dssp             SCCEEEEEEETTTEECEEEEEECTTSEEEEEEECSSCEEEEEEEEETTEECTTCSEEEEE
T ss_pred             CccEEEEEECCCCCEeeEEEEECCCCEEEEEEEeCCCccEEEEEEECCEECCCCCEEEEE
Confidence            4478888888887644322 233345  5567888899999988755432 244544443

>3irp_X URO-adherence factor A; DEV-IGG fold, cell WALL, hemagglutinin, peptidoglycan-anchor secreted, virulence, cell adhesion; 1.50A {Staphylococcus saprophyticus subsp} PDB: 3irz_A 3is0_X 3is1_X

Probab=81.68  E-value=2  Score=34.61  Aligned_cols=43  Identities=19%  Similarity=0.302  Sum_probs=37.7

Q ss_pred             ceEEEEEeCCCCCeEEeeeccccceEEEEeeccCceeEEEEec
Q 031159           63 HKLTVRVTSAYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAV  105 (164)
Q Consensus        63 ~~i~~~v~dp~g~~l~~~~~~~~g~~~f~~~~~G~y~~Cf~n~  105 (164)
                      .++.|.++|++|.++........|.|.|.....|.|.+-|..+
T Consensus       330 ~gv~v~L~d~~G~~v~tttTd~~G~Y~F~~L~~G~Y~V~~~~P  372 (429)
T 3irp_X          330 AGITVNLLDPTGIRLATTTTDITGHYNFDNLTNGNYLVEFVMP  372 (429)
T ss_dssp             TTCEEEEECTTSCEEEEEECCTTSEEEEEEEESEEEEEEECCC
T ss_pred             CCeEEEEEcCCCCEEEEEEeCCCCeEEeCCCCCCcEEEEEECC
Confidence            3788889999999888777778999999999999999998754

>2d7p_A Filamin-C; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10 PDB: 2eeb_A

Probab=81.58  E-value=8.3  Score=24.76  Aligned_cols=65  Identities=17%  Similarity=0.155  Sum_probs=40.0

Q ss_pred             EEEEEEcCCCCCCCCCCceEEEEEeCCCCCeEEee-eccccc--eEEEEeeccCceeEEEEeccCC-CCceEEEE
Q 031159           46 GKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYA-DRVDSG--QFAFTAAEAGDYMACFWAVDHS-PQTTVTID  116 (164)
Q Consensus        46 ~~y~v~~~~~~~~~~~~~~i~~~v~dp~g~~l~~~-~~~~~g--~~~f~~~~~G~y~~Cf~n~~~~-~~~~~~V~  116 (164)
                      .+|.|...+.      +..+.+.|.+|.|+.+-.. .+...|  ..+|+..+.|.|.+.+.-.... ...+..|.
T Consensus        30 ~~F~V~~~~a------~g~l~v~V~~P~g~~~~~~v~d~~~gty~v~ytP~~~G~h~v~V~~~g~~I~GSPF~v~   98 (112)
T 2d7p_A           30 ASFAVQLNGA------RGVIDARVHTPSGAVEECYVSELDSDKHTIRFIPHENGVHSIDVKFNGAHIPGSPFKIR   98 (112)
T ss_dssp             EEEEEECTTC------CSCEEEEEECSSSCBCCCEECSCBTTEEEEEECCSSCEEEEEEEEESSCBCTTCSEEEE
T ss_pred             EEEEEEeCCC------CCCEEEEEECCCCCeeeeEEEeCCCCeEEEEEEcCCCEeEEEEEEECCeEcCCCCEEEE
Confidence            3555654432      2378999999999754322 222333  6678889999999987755443 34553333

>2dmc_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=81.26  E-value=4.3  Score=26.36  Aligned_cols=55  Identities=16%  Similarity=0.226  Sum_probs=35.7

Q ss_pred             CceEEEEEeCCCCCeEEee-ecccc--ceEEEEeeccCceeEEEEeccCC-CCceEEEE
Q 031159           62 SHKLTVRVTSAYGNSYHYA-DRVDS--GQFAFTAAEAGDYMACFWAVDHS-PQTTVTID  116 (164)
Q Consensus        62 ~~~i~~~v~dp~g~~l~~~-~~~~~--g~~~f~~~~~G~y~~Cf~n~~~~-~~~~~~V~  116 (164)
                      ...+.+.|.+|+|+.+-.. .+...  =..+|+..+.|.|.+.+.-.... .+.+..|.
T Consensus        44 ~~~l~v~v~~PsG~~~~~~v~~~~~g~y~v~ftP~e~G~h~v~V~~~g~~I~GSPF~v~  102 (116)
T 2dmc_A           44 LSSLTASIKAPSGRDEPCLLKRLPNNHIGISFIPREVGEHLVSIKKNGNHVANSPVSIM  102 (116)
T ss_dssp             STTBCCEEECTTSCBCCEEEEEETTTEEEEEECCCSCEEEEEECBBSSSBCTTCSEEEE
T ss_pred             CCCEEEEEECCCCCEEeeEEEeCCCCeEEEEEEeCCCeeEEEEEEECCEECCCCCeEEE
Confidence            4478889999999743221 12233  45678999999999987755443 34554443

>2eea_A Filamin-B; beta-sandwich, immunoglobulin-like fold, interaction with GP1BA, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=81.13  E-value=8.5  Score=24.64  Aligned_cols=64  Identities=16%  Similarity=0.268  Sum_probs=40.1

Q ss_pred             EEEEEcCCCCCCCCCCceEEEEEeCCCCCeEEeeeccccc--eEEEEeeccCceeEEEEeccCC-CCceEEEE
Q 031159           47 KYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYADRVDSG--QFAFTAAEAGDYMACFWAVDHS-PQTTVTID  116 (164)
Q Consensus        47 ~y~v~~~~~~~~~~~~~~i~~~v~dp~g~~l~~~~~~~~g--~~~f~~~~~G~y~~Cf~n~~~~-~~~~~~V~  116 (164)
                      +|.|...+++     ...+.+.|.+|.+..+. -.+...|  ..+|+....|.|.+.+.-.... ...+..|.
T Consensus        41 ~F~v~t~dag-----~~~l~v~v~~p~~~~~~-v~d~~dGty~v~Y~p~~~G~y~I~V~~~g~~I~gSPF~v~  107 (115)
T 2eea_A           41 TFTIVTEDAG-----EGGLDLAIEGPSKAEIS-CIDNKDGTCTVTYLPTLPGDYSILVKYNDKHIPGSPFTAK  107 (115)
T ss_dssp             EEEEECSSCC-----SSCEEEEEESSSCCEEC-CBCCSSSEEEEEEECSSCSCEEEEEEESSSBCTTCSEEEE
T ss_pred             EEEEEcccCC-----CCceEEEEECCCCceEE-EEECCCCEEEEEEEeCCCeeEEEEEEECCEECCCCCEEEE
Confidence            4556544332     45788899999985442 2333445  6678888899999988754432 34454444

>2eec_A Filamin-B; beta-sandwich, immunoglobulin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=80.96  E-value=9.4  Score=25.01  Aligned_cols=65  Identities=11%  Similarity=0.228  Sum_probs=40.0

Q ss_pred             EEEEEcCCCCCCCCCCceEEEEEeCCCCCeEEeeeccccc-eEEEEeeccCceeEEEEecc-CC-CCceEEEEE
Q 031159           47 KYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYADRVDSG-QFAFTAAEAGDYMACFWAVD-HS-PQTTVTIDF  117 (164)
Q Consensus        47 ~y~v~~~~~~~~~~~~~~i~~~v~dp~g~~l~~~~~~~~g-~~~f~~~~~G~y~~Cf~n~~-~~-~~~~~~V~f  117 (164)
                      .|.|...+++     ...+.+.|.+|.+..+--.+ ...| ..+|+....|.|.+.+.-.. .. .+.+..+.+
T Consensus        41 ~F~v~t~daG-----~~~l~v~i~gp~~~~~~~~d-~~dGy~V~Y~P~~~G~y~I~V~~~g~~hI~gSPF~v~v  108 (125)
T 2eec_A           41 EFFINTTRAG-----PGTLSVTIEGPSKVKMDCQE-TPEGYKVMYTPMAPGNYLISVKYGGPNHIVGSPFKAKV  108 (125)
T ss_dssp             EEEEECTTTC-----SCCEEEEEESSSCCCCEEEE-CSSSEEEEECCSSCEEEEEEEEESSSCBCTTCSEEEEE
T ss_pred             EEEEEEcCCC-----CCcEEEEEECCCCCcceeEE-CCCCEEEEEEcCCCeEEEEEEEECCcccCCCCCeEEEE
Confidence            4666654433     45788899999986443222 2233 55677888999998877554 33 345544443

>2hr0_A Complement C3 beta chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2i07_A* 2wii_A* 2win_A* 2xwj_A* 3l3o_A* 3l5n_A* 3nms_A* 3nsa_A* 3ohx_A* 3t4a_A 2a74_A* 2a73_A* 2qki_A* 3g6j_A 2ice_A* 2icf_A* 2xwb_A*

Probab=80.37  E-value=25  Score=29.43  Aligned_cols=64  Identities=14%  Similarity=0.192  Sum_probs=38.9

Q ss_pred             CCcEEEEEEEEEcCCCCCCCCCCceEEEEEeCCCCCeEEeeecc---ccceEE--EEee---ccCceeEEEEecc
Q 031159           40 SNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYADRV---DSGQFA--FTAA---EAGDYMACFWAVD  106 (164)
Q Consensus        40 ~~~~v~~~y~v~~~~~~~~~~~~~~i~~~v~dp~g~~l~~~~~~---~~g~~~--f~~~---~~G~y~~Cf~n~~  106 (164)
                      +|+.|.+..-+.+.+   ..|.+..+.+.|.||+|+.+.+..-.   ..|-++  |...   ..|.|++-+....
T Consensus       119 PGqtV~~r~i~~d~~---~~p~~~~v~v~l~dP~g~~i~~~~~~~~~~~G~~~~~f~Lp~~~~~G~w~I~v~~~~  190 (645)
T 2hr0_A          119 PGSTVLYRIFTVNHK---LLPVGRTVMVNIENPEGIPVKQDSLSSQNQLGVLPLSWDIPELVNMGQWKIRAYYEN  190 (645)
T ss_dssp             TTSEEEEEEEEECTT---SCBCCCEEEEEEECTTSCEEEEEEEECTTTTTEEEEEEECCSSCCCSEEEEEEEETT
T ss_pred             CCCEEEEEEEEECCC---CcccCceEEEEEECCCCCEEEEEEeeccccCCeEEEEEECCCccccccEEEEEEECC
Confidence            345555544444432   23334578999999999998864322   345443  3332   3599999988643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	164
d1olma2	119	Supernatant protein factor (SPF), C-terminal domai	97.88
d2d7ma1	102	Filamin C {Human (Homo sapiens) [TaxId: 9606]}	95.04
d2dmba1	111	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	93.25
d2di8a1	98	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	92.97
d2nqca1	97	Filamin C {Human (Homo sapiens) [TaxId: 9606]}	92.64
d2w0pa1	92	Filamin a {Human (Homo sapiens) [TaxId: 9606]}	92.27
d2bp3a1	92	Filamin a {Human (Homo sapiens) [TaxId: 9606]}	91.59
d2d7pa1	99	Filamin C {Human (Homo sapiens) [TaxId: 9606]}	91.09
d2dica1	98	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	90.86
d2dj4a1	101	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	89.75
d2di9a1	118	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	89.68
d1v05a_	96	Filamin C {Human (Homo sapiens) [TaxId: 9606]}	88.03
d2dmca1	103	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	86.84
d2j3sa2	88	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	86.82
d1qfha1	104	F-actin cross-linking gelation factor (ABP-120) re	85.85
d2diaa1	100	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	83.74
d1pmya_	123	Pseudoazurin {Methylobacterium extorquens, strain	82.46

>d1olma2 b.132.1.1 (A:275-393) Supernatant protein factor (SPF), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Supernatant protein factor (SPF), C-terminal domain
superfamily: Supernatant protein factor (SPF), C-terminal domain
family: Supernatant protein factor (SPF), C-terminal domain
domain: Supernatant protein factor (SPF), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.88  E-value=0.0002  Score=46.32  Aligned_cols=91  Identities=10%  Similarity=0.088  Sum_probs=59.3

Q ss_pred             EEEEeCCccceeceecc-CCcEEEEEEEEEcCCCCCCCCCCceEEEEEeC--CCC------C--eEEeeeccc--c--ce
Q 031159           23 RFEIQSAHTKCIAEDIK-SNSMTVGKYNVVNPNDGHPLPESHKLTVRVTS--AYG------N--SYHYADRVD--S--GQ   87 (164)
Q Consensus        23 ~f~i~~~~~~Cf~e~v~-~~~~v~~~y~v~~~~~~~~~~~~~~i~~~v~d--p~g------~--~l~~~~~~~--~--g~   87 (164)
                      ++.|.+|+....--.+. +++.+...|.+.+          .+|.|.|.=  ..|      .  .+.......  .  -.
T Consensus         7 tvtV~~G~~~~v~~~v~~~Gs~l~WeF~t~~----------~DI~Fgv~~~~~~~~~~~~~~~~~v~p~~r~~s~~~p~~   76 (119)
T d1olma2           7 SVQISRGSSHQVEYEILFPGCVLRWQFMSDG----------ADVGFGIFLKTKMGERQRAGEMTEVLPNQRYNSHLVPED   76 (119)
T ss_dssp             EEEECTTCEEEEEEEECSTTCEEEEEEEESS----------SCEEEEEEEC----CCCCGGGSEEEEEEEEECTTTSCEE
T ss_pred             EEEECCCCEEEEEEEEeCCCcEEEEEEEeCC----------ccEEEEEEEecccCCccccCceEEEeeeEEecCCceeEc
Confidence            56788888866665654 5788888887743          256666651  111      1  233322111  1  12


Q ss_pred             EEEEeeccCceeEEEEeccCCCCceEEEEEEEeeccc
Q 031159           88 FAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTGVQ  124 (164)
Q Consensus        88 ~~f~~~~~G~y~~Cf~n~~~~~~~~~~V~f~~~~g~~  124 (164)
                      =+|.+...|.|.+||+|+.|. ...+.|.+.+++-..
T Consensus        77 g~~~~~~~G~Y~l~FDNs~S~-~~sK~l~Y~i~v~~P  112 (119)
T d1olma2          77 GTLTCSDPGIYVLRFDNTYSF-IHAKKVNFTVEVLLP  112 (119)
T ss_dssp             EEEECCSCEEEEEEEECTTCC-CCSEEEEEEEEEECC
T ss_pred             cEEEcCCCEEEEEEEeCCcce-EEeeEEEEEEEEECC
Confidence            357778999999999999986 778999999887544

>d2d7ma1 b.1.18.10 (A:8-109) Filamin C {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.04  E-value=0.09  Score=32.08  Aligned_cols=55  Identities=16%  Similarity=0.226  Sum_probs=36.3

Q ss_pred             CceEEEEEeCCCCCeEEee-eccccc--eEEEEeeccCceeEEEEeccCC-CCceEEEE
Q 031159           62 SHKLTVRVTSAYGNSYHYA-DRVDSG--QFAFTAAEAGDYMACFWAVDHS-PQTTVTID  116 (164)
Q Consensus        62 ~~~i~~~v~dp~g~~l~~~-~~~~~g--~~~f~~~~~G~y~~Cf~n~~~~-~~~~~~V~  116 (164)
                      ...+.+.|.+|+|+.+--. .+...|  ..+|+....|.|.+.+.-.... .+.+..|.
T Consensus        36 ~g~l~v~i~~p~g~~~~~~v~~~~dg~y~v~y~P~~~G~h~i~V~~~g~~I~gSPF~v~   94 (102)
T d2d7ma1          36 EGLLTVQILDPEGKPKKANIRDNGDGTYTVSYLPDMSGRYTITIKYGGDEIPYSPFRIH   94 (102)
T ss_dssp             SSCEEEEEECTTSCBCCEEEEECSSSCEEEEECCCSCEEEEEEEEESSCBCTTCSEEEE
T ss_pred             CCcEEEEEEeCCCCEeeeEEEeCCCcEEEEEEEECCCEeEEEEEEECCEECCCCCEEEE
Confidence            3478899999999854322 223345  4589999999999988755433 34554443

>d2dmba1 b.1.18.10 (A:8-118) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.25  E-value=0.37  Score=29.60  Aligned_cols=55  Identities=22%  Similarity=0.284  Sum_probs=37.2

Q ss_pred             CceEEEEEeCCCCCeEEee-eccccc--eEEEEeeccCceeEEEEeccCC-CCceEEEE
Q 031159           62 SHKLTVRVTSAYGNSYHYA-DRVDSG--QFAFTAAEAGDYMACFWAVDHS-PQTTVTID  116 (164)
Q Consensus        62 ~~~i~~~v~dp~g~~l~~~-~~~~~g--~~~f~~~~~G~y~~Cf~n~~~~-~~~~~~V~  116 (164)
                      ...+.+.|.+|.|+.+--. .+...|  ..+|+..+.|.|++.+.-.... .+.+..|.
T Consensus        35 ~g~l~v~v~~p~g~~~~~~v~d~~~G~y~v~f~P~~~G~h~i~V~~~g~~I~gSPf~v~   93 (111)
T d2dmba1          35 KGKVTCTVLTPDGTEAEADVIENEDGTYDIFYTAAKPGTYVIYVRFGGVDIPNSPFTVM   93 (111)
T ss_dssp             SCCEEEEEECTTSCBCCCEEEECTTSCEEEEEECSSCEEEEEEEEESSCBCTTCSEEEE
T ss_pred             CCcEEEEEEECCCCEEEeEEEECCCCEEEEEEEECCCCCEEEEEEECCEECCCCCEEEE
Confidence            3478899999999865322 233455  5688999999999998765443 34454444

>d2di8a1 b.1.18.10 (A:8-105) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.97  E-value=0.49  Score=28.31  Aligned_cols=64  Identities=14%  Similarity=0.273  Sum_probs=39.7

Q ss_pred             EEEEEcCCCCCCCCCCceEEEEEeCCCCCeEEeeeccccc--eEEEEeeccCceeEEEEeccCC-CCceEEEE
Q 031159           47 KYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYADRVDSG--QFAFTAAEAGDYMACFWAVDHS-PQTTVTID  116 (164)
Q Consensus        47 ~y~v~~~~~~~~~~~~~~i~~~v~dp~g~~l~~~~~~~~g--~~~f~~~~~G~y~~Cf~n~~~~-~~~~~~V~  116 (164)
                      +|.|...+++     ...+.+.|.+|++..+.-. +...|  ..+|+....|.|.+.+.-.... .+++.+|.
T Consensus        24 ~F~V~~~~aG-----~g~l~v~i~gp~~~~v~v~-~~~dg~y~v~y~P~~~G~y~i~V~~~g~~I~gSPF~v~   90 (98)
T d2di8a1          24 DFIVDTRDAG-----YGGISLAVEGPSKVDIQTE-DLEDGTCKVSYFPTVPGVYIVSTKFADEHVPGSPFTVK   90 (98)
T ss_dssp             EEEEECTTTC-----BCCEEEEEESSSCCCEECC-BCTTSCEEEEECCCSCSEEEEEEEESSCBCTTCSEEEE
T ss_pred             EEEEEeCCCC-----CCceEEEEEeCCCceEEEE-ECCCCEEEEEEEECCCceEEEEEEECCEECCCCCEEEE
Confidence            4556544332     3478889999988765432 22344  4568889999999987654432 34554443

>d2nqca1 b.1.18.10 (A:2482-2578) Filamin C {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.64  E-value=0.4  Score=28.66  Aligned_cols=55  Identities=11%  Similarity=0.155  Sum_probs=36.6

Q ss_pred             CceEEEEEeCCCCCeEEeeeccccceEEEEeeccCceeEEEEecc-CC-CCceEEEE
Q 031159           62 SHKLTVRVTSAYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAVD-HS-PQTTVTID  116 (164)
Q Consensus        62 ~~~i~~~v~dp~g~~l~~~~~~~~g~~~f~~~~~G~y~~Cf~n~~-~~-~~~~~~V~  116 (164)
                      ...+.+.|.+|.+..+--..+...-..+|+....|.|.+.+.-.. .. .+++.+|.
T Consensus        34 ~~~l~v~v~~p~~~~~~~~~~~~~y~v~y~P~~~G~h~i~V~~~g~~~I~gSPF~v~   90 (97)
T d2nqca1          34 SGALSVTIDGPSKVQLDCRECPEGHVVTYTPMAPGNYLIAIKYGGPQHIVGSPFKAK   90 (97)
T ss_dssp             SCCEEEEEESSSCCEEEEEEETTEEEEEEECCSCEEEEEEEEESSSCBCTTCSEEEE
T ss_pred             CCceEEEEEcCCCceEEEEECCCcEEEEEEeCCCEeEEEEEEECCccccCCcCEEEE
Confidence            447888999999976544433333467899999999999875332 22 34554444

>d2w0pa1 b.1.18.10 (A:2237-2328) Filamin a {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.27  E-value=0.51  Score=27.95  Aligned_cols=54  Identities=17%  Similarity=0.319  Sum_probs=35.4

Q ss_pred             CceEEEEEeCCCCCeEEeeeccccc--eEEEEeeccCceeEEEEeccCC-CCceEEEE
Q 031159           62 SHKLTVRVTSAYGNSYHYADRVDSG--QFAFTAAEAGDYMACFWAVDHS-PQTTVTID  116 (164)
Q Consensus        62 ~~~i~~~v~dp~g~~l~~~~~~~~g--~~~f~~~~~G~y~~Cf~n~~~~-~~~~~~V~  116 (164)
                      ...+.+.|.+|++..+.-. +...|  ..+|+....|.|.+.+.-.... ...+.+|.
T Consensus        32 ~g~l~v~v~gp~~~~v~v~-d~~dg~y~v~ytP~~~G~y~i~V~~~g~~I~gSPF~v~   88 (92)
T d2w0pa1          32 AGGLAIAVEGPSKAEISFE-DRKDGSCGVAYVVQEPGDYEVSVKFNEEHIPDSPFVVP   88 (92)
T ss_dssp             SCCEEEEEEESSCCEEEEE-ECTTSCEEEEEECSSCEEEEEEEEETTEECTTCSEEEE
T ss_pred             CCceEEEEEeCCceEEEEE-ECCCCEEEEEEEECCCceEEEEEEECCEECCCCCeEEE
Confidence            3478888999998765433 23455  4589999999999987654322 23444443

>d2bp3a1 b.1.18.10 (A:1863-1954) Filamin a {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.59  E-value=0.72  Score=27.14  Aligned_cols=43  Identities=14%  Similarity=0.190  Sum_probs=31.0

Q ss_pred             CceEEEEEeCCCCCeEEeeeccccceE--EEEeeccCceeEEEEec
Q 031159           62 SHKLTVRVTSAYGNSYHYADRVDSGQF--AFTAAEAGDYMACFWAV  105 (164)
Q Consensus        62 ~~~i~~~v~dp~g~~l~~~~~~~~g~~--~f~~~~~G~y~~Cf~n~  105 (164)
                      ...+.+.|.+|.+..+.-.+ ...|.|  +|+..+.|.|.+-+.-.
T Consensus        33 ~g~l~v~v~~p~~~~~~v~~-~~dg~y~v~ytP~~~G~h~i~V~~~   77 (92)
T d2bp3a1          33 EGGLSLAIEGPSKAEISCTD-NQDGTCSVSYLPVLPGDYSILVKYN   77 (92)
T ss_dssp             SEEEEEEEEESSCCEEEEEE-CSSSEEEEEEECSSCEEEEEEEEET
T ss_pred             CCceEEEEEeCCCceEEEEE-CCCCEEEEEEEECCCccEEEEEEEC
Confidence            45888999999998654333 344555  59999999999865533

>d2d7pa1 b.1.18.10 (A:8-106) Filamin C {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.09  E-value=0.82  Score=27.30  Aligned_cols=54  Identities=19%  Similarity=0.166  Sum_probs=35.4

Q ss_pred             ceEEEEEeCCCCCeEEee-eccccc--eEEEEeeccCceeEEEEeccCC-CCceEEEE
Q 031159           63 HKLTVRVTSAYGNSYHYA-DRVDSG--QFAFTAAEAGDYMACFWAVDHS-PQTTVTID  116 (164)
Q Consensus        63 ~~i~~~v~dp~g~~l~~~-~~~~~g--~~~f~~~~~G~y~~Cf~n~~~~-~~~~~~V~  116 (164)
                      ..+++.|.+|+|..+-.. .+...|  ..+|+....|.|.+.+.-.... ...+.++.
T Consensus        34 g~l~v~v~~p~g~~v~~~v~~~~dg~y~v~y~P~~~G~~~i~V~~~g~~I~gSPf~v~   91 (99)
T d2d7pa1          34 GVIDARVHTPSGAVEECYVSELDSDKHTIRFIPHENGVHSIDVKFNGAHIPGSPFKIR   91 (99)
T ss_dssp             SCEEEEEECSSSCBCCCEECSCBTTEEEEEECCSSCEEEEEEEEESSCBCTTCSEEEE
T ss_pred             CeEEEEEEcCCCCEeeeEEEeCCCCEEEEEEEECCCCcEEEEEEECCEECCCCCEEEE
Confidence            368899999999865322 223345  4458889999999987765443 34454443

>d2dica1 b.1.18.10 (A:8-105) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.86  E-value=0.91  Score=26.95  Aligned_cols=54  Identities=13%  Similarity=0.156  Sum_probs=34.6

Q ss_pred             CceEEEEEeCCCCCeEEeeeccccc--eEEEEeeccCceeEEEEeccCC-CCceEEEE
Q 031159           62 SHKLTVRVTSAYGNSYHYADRVDSG--QFAFTAAEAGDYMACFWAVDHS-PQTTVTID  116 (164)
Q Consensus        62 ~~~i~~~v~dp~g~~l~~~~~~~~g--~~~f~~~~~G~y~~Cf~n~~~~-~~~~~~V~  116 (164)
                      ...+.+.|.+|.+..+--. +...|  ..+|+..+.|.|.+.+.-.... .+.+.+|.
T Consensus        34 ~g~l~v~v~~p~~~~~~v~-~~~dg~y~v~y~P~~~G~y~i~V~~~g~~I~gSPF~v~   90 (98)
T d2dica1          34 IGGLGITVEGPSESKINCR-DNKDGSCSAEYIPFAPGDYDVNITYGGAHIPGSPFRVP   90 (98)
T ss_dssp             SSCEEEEEESSSCCCCEEE-ECSSSCEEEEECCSSCEEEEEEEEETTEECTTCSEEEE
T ss_pred             CCCcEEEEEeCCCcEEEEE-ECCCCEEEEEEEECCCceEEEEEEECCEECCCCCEEEE
Confidence            3468889999988754322 22334  4568899999999987654332 34454444

>d2dj4a1 b.1.18.10 (A:8-108) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.75  E-value=1.2  Score=26.56  Aligned_cols=55  Identities=22%  Similarity=0.320  Sum_probs=35.1

Q ss_pred             CceEEEEEeCCCCCeEEee-eccccc--eEEEEeeccCceeEEEEeccCC-CCceEEEE
Q 031159           62 SHKLTVRVTSAYGNSYHYA-DRVDSG--QFAFTAAEAGDYMACFWAVDHS-PQTTVTID  116 (164)
Q Consensus        62 ~~~i~~~v~dp~g~~l~~~-~~~~~g--~~~f~~~~~G~y~~Cf~n~~~~-~~~~~~V~  116 (164)
                      ...+.+.|.+|+|..+--+ .+...|  ..+|+....|.|++-+.-.... .+.+.++.
T Consensus        35 ~g~l~v~i~~p~g~~~~~~v~~~~dG~y~v~y~P~~~G~y~i~V~~~g~~I~gSPF~v~   93 (101)
T d2dj4a1          35 LAPLEVRVLGPRGLVEPVNVVDNGDGTHTVTYTPSQEGPYMVSVKYADEEIPRSPFKVK   93 (101)
T ss_dssp             SCCEEEEEECSSSCEECCCCEECSSSEEEEEECCSSCEEEEEEEEESSSBCTTCSEEEE
T ss_pred             CCCEEEEEEECCCCEeEEEEEeCCCCEEEEEEEeCCCeeEEEEEEECCEECCCCCEEEE
Confidence            4478899999999865422 223344  5678888999999876544322 24454433

>d2di9a1 b.1.18.10 (A:8-125) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.68  E-value=1.3  Score=27.04  Aligned_cols=54  Identities=15%  Similarity=0.307  Sum_probs=36.4

Q ss_pred             CceEEEEEeCCCCCeEEeeeccccc--eEEEEeeccCceeEEEEeccCC-CCceEEEE
Q 031159           62 SHKLTVRVTSAYGNSYHYADRVDSG--QFAFTAAEAGDYMACFWAVDHS-PQTTVTID  116 (164)
Q Consensus        62 ~~~i~~~v~dp~g~~l~~~~~~~~g--~~~f~~~~~G~y~~Cf~n~~~~-~~~~~~V~  116 (164)
                      ...+.+.|.+|.+..+.-.+ ...|  ..+|+....|.|++.+.-.... .+...+|.
T Consensus        54 ~g~l~v~i~~p~~~~~~v~~-~~dG~y~v~ytP~~~G~y~i~V~~~g~~i~gSPf~v~  110 (118)
T d2di9a1          54 TGGLGLTVEGPCEAKIECSD-NGDGTCSVSYLPTKPGEYFVNILFEEVHIPGSPFKAD  110 (118)
T ss_dssp             SSCEEEEECSSSCCEEEEEE-CSSSEEEEEEECSSSSEEEEEEEESSCBCTTCSEEEE
T ss_pred             CCccEEEEecCCceEEEEEE-CCCCEEEEEEEeCCcEeEEEEEEECCEECCCCCEEEE
Confidence            44788899999987654332 2333  5688899999999988765543 34554444

>d1v05a_ b.1.18.10 (A:) Filamin C {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.03  E-value=1.6  Score=25.70  Aligned_cols=44  Identities=20%  Similarity=0.290  Sum_probs=30.9

Q ss_pred             ceEEEEEeCCCCCeEE-eeeccccc--eEEEEeeccCceeEEEEecc
Q 031159           63 HKLTVRVTSAYGNSYH-YADRVDSG--QFAFTAAEAGDYMACFWAVD  106 (164)
Q Consensus        63 ~~i~~~v~dp~g~~l~-~~~~~~~g--~~~f~~~~~G~y~~Cf~n~~  106 (164)
                      ..+.+.|.+|+|..+- .-.+...|  ..+|+.++.|.|++.+.-..
T Consensus        37 g~l~v~v~~p~g~~v~~~v~~~~~g~y~v~y~P~~~G~~~v~V~~~g   83 (96)
T d1v05a_          37 NMMMVGVHGPKTPCEEVYVKHMGNRVYNVTYTVKEKGDYILIVKWGD   83 (96)
T ss_dssp             CCEEEEEECSSSCCSEEEEEECSTTEEEEEEECSSCEEEEEEEEETT
T ss_pred             CceEEEEEECCCCeeeeEEEECCCCEEEEEEEeCCCccEEEEEEECC
Confidence            3688899999987542 22233344  56788899999999877554

>d2dmca1 b.1.18.10 (A:8-110) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.84  E-value=0.31  Score=29.42  Aligned_cols=41  Identities=17%  Similarity=0.331  Sum_probs=27.7

Q ss_pred             CceEEEEEeCCCCCeEEe-eeccccce--EEEEeeccCceeEEE
Q 031159           62 SHKLTVRVTSAYGNSYHY-ADRVDSGQ--FAFTAAEAGDYMACF  102 (164)
Q Consensus        62 ~~~i~~~v~dp~g~~l~~-~~~~~~g~--~~f~~~~~G~y~~Cf  102 (164)
                      ...+.+.|++|+|+.+-. -.+...|.  .+|+..+.|.|.+=+
T Consensus        37 ~g~l~v~v~~P~g~~v~~~v~~~~dg~y~v~f~P~~~G~h~i~V   80 (103)
T d2dmca1          37 LSSLTASIKAPSGRDEPCLLKRLPNNHIGISFIPREVGEHLVSI   80 (103)
T ss_dssp             STTBCCEEECTTSCBCCEEEEEETTTEEEEEECCCSCEEEEEEC
T ss_pred             CCcEEEEEECCCCCEeccEEEECCCCEEEEEEEeCCceeEEEEE
Confidence            347888999999985432 12223444  468889999998743

>d2j3sa2 b.1.18.10 (A:2149-2236) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.82  E-value=0.44  Score=27.96  Aligned_cols=44  Identities=20%  Similarity=0.231  Sum_probs=28.8

Q ss_pred             ceEEEEEeCCCCCeEEee-eccccceE--EEEeeccCceeEEEEecc
Q 031159           63 HKLTVRVTSAYGNSYHYA-DRVDSGQF--AFTAAEAGDYMACFWAVD  106 (164)
Q Consensus        63 ~~i~~~v~dp~g~~l~~~-~~~~~g~~--~f~~~~~G~y~~Cf~n~~  106 (164)
                      .++.+.|.+|+|+.+-.. .....|.|  +|+....|.|.+-+.-..
T Consensus        24 g~l~v~v~~P~g~~~~~~v~~~~~g~y~v~y~P~~~G~h~i~V~~~g   70 (88)
T d2j3sa2          24 QDMTAQVTSPSGKTHEAEIVEGENHTYCIRFVPAEMGTHTVSVKYKG   70 (88)
T ss_dssp             CCEEEEEECTTCCEEEEBC-------CCCBCCCCSCEEEEEEEEETT
T ss_pred             CcEEEEEECCCCCEEeeEEEECCCCEEEEEEEECCceeEEEEEEECC
Confidence            378999999999876533 22334544  588899999988776543

>d1qfha1 b.1.18.10 (A:646-749) F-actin cross-linking gelation factor (ABP-120) repeats {Dictyostelium discoideum [TaxId: 44689]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: F-actin cross-linking gelation factor (ABP-120) repeats
species: Dictyostelium discoideum [TaxId: 44689]

Probab=85.85  E-value=1.7  Score=25.79  Aligned_cols=44  Identities=14%  Similarity=0.227  Sum_probs=30.5

Q ss_pred             CceEEEEEeCCCCCeEEee-eccccceE--EEEeeccCceeEEEEec
Q 031159           62 SHKLTVRVTSAYGNSYHYA-DRVDSGQF--AFTAAEAGDYMACFWAV  105 (164)
Q Consensus        62 ~~~i~~~v~dp~g~~l~~~-~~~~~g~~--~f~~~~~G~y~~Cf~n~  105 (164)
                      +..+.+.|.+|+|..+-.. .+...|.|  +|+....|.|.+-+.-.
T Consensus        43 g~~~~v~v~~p~g~~~~~~v~d~~dGtY~v~y~p~~~G~~~i~V~~~   89 (104)
T d1qfha1          43 GDPFEVAINGPDGLVVDAKVTDNNDGTYGVVYDAPVEGNYNVNVTLR   89 (104)
T ss_dssp             CCCEEEEEECGGGCEECCEEEECSSSEEEEEECCCSSEEEEEEEEET
T ss_pred             CceeEEEEECCCCCEEeeEEEECCCCEEEEEEEeCCCEeEEEEEEEC
Confidence            4478999999999865322 23345544  77888889998876644

>d2diaa1 b.1.18.10 (A:8-107) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.74  E-value=2.8  Score=24.63  Aligned_cols=45  Identities=16%  Similarity=0.184  Sum_probs=31.7

Q ss_pred             CceEEEEEeCCCCCeEEee-eccccc--eEEEEeeccCceeEEEEecc
Q 031159           62 SHKLTVRVTSAYGNSYHYA-DRVDSG--QFAFTAAEAGDYMACFWAVD  106 (164)
Q Consensus        62 ~~~i~~~v~dp~g~~l~~~-~~~~~g--~~~f~~~~~G~y~~Cf~n~~  106 (164)
                      ...+.+.|.+|+|+.+--. .+...|  ..+|+..+.|.|++.+.-..
T Consensus        34 ~~~l~v~i~~~~g~~~~~~v~~~~dg~y~v~y~P~~~G~h~i~V~~~g   81 (100)
T d2diaa1          34 PGALGLEAVSDSGTKAEVSIQNNKDGTYAVTYVPLTAGMYTLTMKYGG   81 (100)
T ss_dssp             SCCEEEEEEETTTEECEEEEEECTTSEEEEEEECSSCEEEEEEEEETT
T ss_pred             CCcEEEEEEeCCCCEeeEEEEECCCCEEEEEEEeCcCccEEEEEEECC
Confidence            3478889999998754322 223334  67788999999999987543

>d1pmya_ b.6.1.1 (A:) Pseudoazurin {Methylobacterium extorquens, strain am1 [TaxId: 408]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Pseudoazurin
species: Methylobacterium extorquens, strain am1 [TaxId: 408]

Probab=82.46  E-value=3.5  Score=25.36  Aligned_cols=62  Identities=10%  Similarity=0.075  Sum_probs=38.4

Q ss_pred             ccceEEEEeeccCceeE-EEEeccCCCCceEEEEEEEeecccccCchhhhhcCCccHHHHHHHHHHHHH
Q 031159           84 DSGQFAFTAAEAGDYMA-CFWAVDHSPQTTVTIDFDWRTGVQAKDWSNVAKKGSVDVMELELKKLYDTV  151 (164)
Q Consensus        84 ~~g~~~f~~~~~G~y~~-Cf~n~~~~~~~~~~V~f~~~~g~~~~d~~~~a~~~~~~~l~~~l~~l~~~l  151 (164)
                      ....|+++....|.|.+ |-  .+...+..-.    |.+|....+.+.+++.......+.+|+.|..++
T Consensus        60 ~~~~~~~tF~~~G~Y~Y~C~--pH~~~GM~G~----I~Vgd~~~n~~~~~~~~~~~~~~~~~~~~~~~~  122 (123)
T d1pmya_          60 VGQEAVVKFDKEGVYGFKCA--PHYMMGMVAL----VVVGDKRDNLEAAKSVQHNKLTQKRLDPLFAQI  122 (123)
T ss_dssp             TTSCEEEECCSCEEEEEECS--TTTTTTCEEE----EEESSCCTTHHHHHTCCCCHHHHHHHHHHHHTT
T ss_pred             cccccccccCCCceEEEEec--cCCCCCCEEE----EEECCCCCCHHHHHhhccchhhHHHHHHHHHHc
Confidence            34578899999999987 92  3332122222    234655555555556677777777777766554