Citrus Sinensis ID: 031182

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160----
Protein Sequence
MLWLASELAFKVRFLNNNFQPACCTWSRPYFCSFKNWILKYGKYSECEAALSKALITELLKEHYTIDAVANFDSLCHGLHDWLDLSLNHTVPSSLLILSRAFYASGEASPEKAGQATLSFLPDKIVDTVGVTTLPLEDSVLGSRRKLEFLEMQEEPIKVFDTTL
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHccEEHHcccccHHHHHHHHHHcccccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHccccccHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHccccccccccEEEEEEEEHHEHEHHcHHHcccccccHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHEccccccHHHHHHHHHHHccHHHHHHEEEEEcccccccHHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
MLWLASELAFKVRFlnnnfqpacctwsrpyfcsfknwilkygkySECEAALSKALITELLKEHYTIDAVANFDSLCHglhdwldlslnhtvpssLLILSRAFyasgeaspekagqatlsflpdkivdtvgvttlpledsvlgsrRKLEFLEMQEEPIKVFDTTL
Flexible Loop (DISEMBL)
MLWLASELAFKVRFLNNNFQPACCTWSRPYFCSFKNWILKYGKYSECEAALSKALITELLKEHYTIDAVANFDSLCHGLHDWLDLSLNHTVPSSLLILSRAFYASGEASPEKAGQATLSFLPDKIVDTVGvttlpledsvlgsrrkleflemqeepikvfdttl
Low Complexity Region (SEG)
MLWLASELAFKVRFLNNNFQPACCTWSRPYFCSFKNWILKYGKYSECEAALSKALITELLKEHYTIDAVANFDSLCHGLHDWLDLSLNHTVPSSLLILSRAFYASGEASPEKAGQATLSFLPDKIVDTVGVTTLPLEDSVLGSRRKLEFLEMQEEPIKVFDTTL
Disordered region (IsUnstruct)
*LWLASELAFKVRFLNNNFQPACCTWSRPYFCSFKNWILKYGKYSECEAALSKALITELLKEHYTIDAVANFDSLCHGLHDWLDLSLNHTVPSSLLILSRAFYAS**********ATLSFLPDKIVDTVGVTTLPLEDSVLGSR**LEF***************
Disordered Region (DISOPRED)
*LWL**ELAFKVRFLNNNFQPACCTWSRPYFCSFKNWILKYGKYSECEAALSKALITELLKEHYTIDAVANFDSLCHGLHDWLDLSLNHTVPSSLLILSRAFYASGEASPEKAGQATLSFLPDKIVDTV*******************FLEMQEEPI*V*****
Disordered Region (DISEMBL)
MLWLASELAFKVRFLNNNFQPACCTWSRPYFCSFKNWILKYGKYSECEAALSKALITELLKEHYTIDAVANFDSLCHGLHDWLDLSLNHTVPSSLLILSRAFYAS********GQATLSFLPDKIVDTVGVTTLPLEDSVLGSRRKLEFLEMQEEPIKVFDTTL
Disordered Region (DISPRO)
MLWLASELAFKVRFLNNNFQPACCTWSRPYFCSFKNWILKYGKYSECEAALSKALITELLKEHYTIDAVANFDSLCHGLHDWLDLSLNHTVPSSLLILSRAFYASGEASPEKAGQATLSFLPDKIVDTVGVTTLPLEDSVLGSRRKLEFLEMQEEPIKVF****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLWLASELAFKVRFLNNNFQPACCTWSRPYFCSFKNWILKYGKYSECEAALSKALITELLKEHYTIDAVANFDSLCHGLHDWLDLSLNHTVPSSLLILSRAFYASGEASPEKAGQATLSFLPDKIVDTVGVTTLPLEDSVLGSRRKLEFLEMQEEPIKVFDTTL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	164	2.2.26 [Sep-21-2011]
Q9Z2I0	738	LETM1 and EF-hand domain-	yes	no	0.5	0.111	0.397	2e-07
Q5ZK33	752	LETM1 and EF-hand domain-	yes	no	0.524	0.114	0.348	3e-07
Q5XIN6	739	LETM1 and EF-hand domain-	yes	no	0.5	0.110	0.397	4e-07
O95202	739	LETM1 and EF-hand domain-	yes	no	0.5	0.110	0.385	1e-06
Q0VCA3	732	LETM1 and EF-hand domain-	yes	no	0.5	0.112	0.373	5e-06
Q1LY46	757	LETM1 and EF-hand domain-	yes	no	0.487	0.105	0.35	6e-06

>sp|Q9Z2I0|LETM1_MOUSE LETM1 and EF-hand domain-containing protein 1, mitochondrial OS=Mus musculus GN=Letm1 PE=2 SV=1

 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 45/83 (54%), Gaps = 1/83 (1%)

Query: 73  DSLCHGLHDWLDLSLNHTVPSSLLILSRAFYASGEASPEKAGQATLSFLPDKIVDTVGVT 132
           D L   L  WLDL L+H +P+SLLILSRA Y     SP    ++TL  LP+ +     V 
Sbjct: 391 DRLKGQLKQWLDLHLHHEIPTSLLILSRAMYLPDTLSPADQLKSTLQTLPEIVAKEAQVK 450

Query: 133 TLPLEDSVLGSRRKLEFLEMQEE 155
              +E   + ++ KLE   +QEE
Sbjct: 451 VAEVEGEKVDNKAKLEAT-LQEE 472

Crucial for the maintenance of mitochondrial tubular networks and for the assembly of the supercomplexes of the respiratory chain. Required for the maintenance of the tubular shape and cristae organization.
Mus musculus (taxid: 10090)

>sp|Q5ZK33|LETM1_CHICK LETM1 and EF-hand domain-containing protein 1, mitochondrial OS=Gallus gallus GN=LETM1 PE=2 SV=1

 Score = 54.3 bits (129), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 43/86 (50%)

Query: 73  DSLCHGLHDWLDLSLNHTVPSSLLILSRAFYASGEASPEKAGQATLSFLPDKIVDTVGVT 132
           + L   L  WLDL LN  +P+SLLILSRA Y     SP    + TL  LP+ +     V 
Sbjct: 389 ERLREQLKQWLDLHLNQEIPTSLLILSRAMYLPDTLSPADQLKTTLQTLPESVAKEAQVK 448

Query: 133 TLPLEDSVLGSRRKLEFLEMQEEPIK 158
              +E   + ++ +LE    +E  I+
Sbjct: 449 VAEVEGEKVDNKARLEATLQEEAAIR 474

Crucial for the maintenance of mitochondrial tubular networks and for the assembly of the supercomplexes of the respiratory chain.

Gallus gallus (taxid: 9031)

>sp|Q5XIN6|LETM1_RAT LETM1 and EF-hand domain-containing protein 1, mitochondrial OS=Rattus norvegicus GN=Letm1 PE=1 SV=1

 Score = 54.3 bits (129), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 44/83 (53%), Gaps = 1/83 (1%)

Query: 73  DSLCHGLHDWLDLSLNHTVPSSLLILSRAFYASGEASPEKAGQATLSFLPDKIVDTVGVT 132
           D L   L  WLDL L H +P+SLLILSRA Y     SP    ++TL  LP+ +     V 
Sbjct: 391 DRLKGQLKQWLDLHLYHEIPTSLLILSRAMYLPDTLSPADQLKSTLQTLPEIVAKEAQVK 450

Query: 133 TLPLEDSVLGSRRKLEFLEMQEE 155
              +E   + ++ KLE   +QEE
Sbjct: 451 AAEVEGEQVDNKAKLEAT-LQEE 472

Crucial for the maintenance of mitochondrial tubular networks and for the assembly of the supercomplexes of the respiratory chain. Required for the maintenance of the tubular shape and cristae organization.

Rattus norvegicus (taxid: 10116)

>sp|O95202|LETM1_HUMAN LETM1 and EF-hand domain-containing protein 1, mitochondrial OS=Homo sapiens GN=LETM1 PE=1 SV=1

 Score = 52.8 bits (125), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 44/83 (53%), Gaps = 1/83 (1%)

Query: 73  DSLCHGLHDWLDLSLNHTVPSSLLILSRAFYASGEASPEKAGQATLSFLPDKIVDTVGVT 132
           D L   L  WLDL L+  +P+SLLILSRA Y     SP    ++TL  LP+ +     V 
Sbjct: 392 DRLRGQLKQWLDLHLHQEIPTSLLILSRAMYLPDTLSPADQLKSTLQTLPEIVAKEAQVK 451

Query: 133 TLPLEDSVLGSRRKLEFLEMQEE 155
              +E   + ++ KLE   +QEE
Sbjct: 452 VAEVEGEQVDNKAKLEAT-LQEE 473

Crucial for the maintenance of mitochondrial tubular networks and for the assembly of the supercomplexes of the respiratory chain. Required for the maintenance of the tubular shape and cristae organization.

Homo sapiens (taxid: 9606)

>sp|Q0VCA3|LETM1_BOVIN LETM1 and EF-hand domain-containing protein 1, mitochondrial OS=Bos taurus GN=LETM1 PE=2 SV=1

 Score = 50.4 bits (119), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 44/83 (53%), Gaps = 1/83 (1%)

Query: 73  DSLCHGLHDWLDLSLNHTVPSSLLILSRAFYASGEASPEKAGQATLSFLPDKIVDTVGVT 132
           D L   L  WL+L L+  +P+SLLILSRA Y     SP    ++TL  LP+ +     V 
Sbjct: 378 DRLRGQLKQWLELHLHQEIPTSLLILSRAMYLPETLSPADQLKSTLQTLPEIVAKEAQVK 437

Query: 133 TLPLEDSVLGSRRKLEFLEMQEE 155
              +E   + ++ KLE   +QEE
Sbjct: 438 VAEVEGEQVDNKAKLEAT-LQEE 459

Crucial for the maintenance of mitochondrial tubular networks and for the assembly of the supercomplexes of the respiratory chain. Required for the maintenance of the tubular shape and cristae organization.

Bos taurus (taxid: 9913)

>sp|Q1LY46|LETM1_DANRE LETM1 and EF-hand domain-containing protein 1, mitochondrial OS=Danio rerio GN=letm1 PE=3 SV=2

 Score = 50.4 bits (119), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 28/80 (35%), Positives = 42/80 (52%)

Query: 79  LHDWLDLSLNHTVPSSLLILSRAFYASGEASPEKAGQATLSFLPDKIVDTVGVTTLPLED 138
           L  WL+L LN  +P+SLL+LSRA +     SP    + TL  LP+ +     V    L+ 
Sbjct: 405 LKQWLELHLNQHIPTSLLLLSRAMFLPDTLSPADQLKTTLQNLPEIMAKEAQVKVAELDF 464

Query: 139 SVLGSRRKLEFLEMQEEPIK 158
           S + ++ KLE    +E  I+
Sbjct: 465 SKVDNKTKLETTLQEEAAIR 484

Crucial for the maintenance of mitochondrial tubular networks and for the assembly of the supercomplexes of the respiratory chain.

Danio rerio (taxid: 7955)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	164
296083396	432	unnamed protein product [Vitis vinifera]	0.506	0.192	0.710	1e-25
359495892	504	PREDICTED: LETM1 and EF-hand domain-cont	0.457	0.148	0.786	3e-25
357519309	543	LETM1 and EF-hand domain-containing prot	0.664	0.200	0.563	5e-25
255547432	758	leucine zipper-ef-hand containing transm	0.457	0.098	0.773	9e-25
356530007	755	PREDICTED: LETM1 and EF-hand domain-cont	0.506	0.109	0.686	1e-24
224101261	687	predicted protein [Populus trichocarpa]	0.457	0.109	0.76	4e-24
224109172	658	predicted protein [Populus trichocarpa]	0.493	0.123	0.716	4e-24
413937703	548	hypothetical protein ZEAMMB73_194278, pa	0.524	0.156	0.701	5e-24
357164473	754	PREDICTED: LETM1 and EF-hand domain-cont	0.512	0.111	0.694	6e-24
225434179	764	PREDICTED: LETM1 and EF-hand domain-cont	0.701	0.150	0.533	6e-24

>gi|296083396|emb|CBI23351.3| unnamed protein product [Vitis vinifera]

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 59/83 (71%), Positives = 66/83 (79%)

Query: 71  NFDSLCHGLHDWLDLSLNHTVPSSLLILSRAFYASGEASPEKAGQATLSFLPDKIVDTVG 130
           + + +   L DWLDLSLNH VPSSLLILSRAF  SG+  PE+A QATLS LPD++VDTVG
Sbjct: 122 SVEEMRQQLRDWLDLSLNHAVPSSLLILSRAFTVSGKVKPEEAVQATLSSLPDEVVDTVG 181

Query: 131 VTTLPLEDSVLGSRRKLEFLEMQ 153
           VTTLP EDSV   RRKLEFLEMQ
Sbjct: 182 VTTLPSEDSVSERRRKLEFLEMQ 204

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359495892|ref|XP_003635110.1| PREDICTED: LETM1 and EF-hand domain-containing protein 1, mitochondrial-like [Vitis vinifera]

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 59/75 (78%), Positives = 63/75 (84%)

Query: 79  LHDWLDLSLNHTVPSSLLILSRAFYASGEASPEKAGQATLSFLPDKIVDTVGVTTLPLED 138
           L DWLDLSLNH VPSSLLILSRAF  SG+  PE+A QATLS LPD++VDTVGVTTLP ED
Sbjct: 202 LRDWLDLSLNHAVPSSLLILSRAFTVSGKVKPEEAVQATLSSLPDEVVDTVGVTTLPSED 261

Query: 139 SVLGSRRKLEFLEMQ 153
           SV   RRKLEFLEMQ
Sbjct: 262 SVSERRRKLEFLEMQ 276

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357519309|ref|XP_003629943.1| LETM1 and EF-hand domain-containing protein [Medicago truncatula] gi|355523965|gb|AET04419.1| LETM1 and EF-hand domain-containing protein [Medicago truncatula]

 Score =  119 bits (297), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 62/110 (56%), Positives = 80/110 (72%), Gaps = 1/110 (0%)

Query: 50  ALSKALITELLKEHYTIDAVANFDSLCHGLHDWLDLSLNHTVPSSLLILSRAFYASGEAS 109
           +LS+A + E  +E   +  + + + +   L DWLDLSLNH+VPSSLLILSRAF  SG + 
Sbjct: 398 SLSEAELREDCRERGML-GLRSVEEMRQQLRDWLDLSLNHSVPSSLLILSRAFIVSGRSK 456

Query: 110 PEKAGQATLSFLPDKIVDTVGVTTLPLEDSVLGSRRKLEFLEMQEEPIKV 159
           PE+  Q T+S LPD++VDT+ VT+LP EDSV   +RKLEFLEMQEE IKV
Sbjct: 457 PEEILQNTISSLPDELVDTIQVTSLPSEDSVSERKRKLEFLEMQEERIKV 506

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255547432|ref|XP_002514773.1| leucine zipper-ef-hand containing transmembrane protein, putative [Ricinus communis] gi|223545824|gb|EEF47327.1| leucine zipper-ef-hand containing transmembrane protein, putative [Ricinus communis]

 Score =  118 bits (295), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 58/75 (77%), Positives = 63/75 (84%)

Query: 79  LHDWLDLSLNHTVPSSLLILSRAFYASGEASPEKAGQATLSFLPDKIVDTVGVTTLPLED 138
           L DWLDLSLNH+VPSSLLILSRAF  SG+  PE+A QATLS LPD++VDTVGVT LP ED
Sbjct: 455 LRDWLDLSLNHSVPSSLLILSRAFSVSGKVKPEEAVQATLSSLPDEVVDTVGVTALPSED 514

Query: 139 SVLGSRRKLEFLEMQ 153
           SV   RRKLEFLEMQ
Sbjct: 515 SVSERRRKLEFLEMQ 529

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356530007|ref|XP_003533577.1| PREDICTED: LETM1 and EF-hand domain-containing protein 1, mitochondrial-like [Glycine max]

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 57/83 (68%), Positives = 67/83 (80%)

Query: 71  NFDSLCHGLHDWLDLSLNHTVPSSLLILSRAFYASGEASPEKAGQATLSFLPDKIVDTVG 130
           + + +   L DWLDLSLNH+VPSSLLILSRAF  SG+  PE+A QATLS LPD++VDTVG
Sbjct: 451 SVEEMQQQLRDWLDLSLNHSVPSSLLILSRAFSVSGKVRPEEAVQATLSSLPDEVVDTVG 510

Query: 131 VTTLPLEDSVLGSRRKLEFLEMQ 153
           VTTLP EDSV   +RKLE+LEMQ
Sbjct: 511 VTTLPSEDSVSERKRKLEYLEMQ 533

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224101261|ref|XP_002312206.1| predicted protein [Populus trichocarpa] gi|222852026|gb|EEE89573.1| predicted protein [Populus trichocarpa]

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 57/75 (76%), Positives = 63/75 (84%)

Query: 79  LHDWLDLSLNHTVPSSLLILSRAFYASGEASPEKAGQATLSFLPDKIVDTVGVTTLPLED 138
           LHDWLDLSLN +VPSSLLILSRAF  SG+  PE+A QATLS LPD++VDTVGVT LP ED
Sbjct: 384 LHDWLDLSLNRSVPSSLLILSRAFSISGKVRPEEAVQATLSSLPDEVVDTVGVTALPSED 443

Query: 139 SVLGSRRKLEFLEMQ 153
           SV   RRKLE+LEMQ
Sbjct: 444 SVSERRRKLEYLEMQ 458

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224109172|ref|XP_002315110.1| predicted protein [Populus trichocarpa] gi|222864150|gb|EEF01281.1| predicted protein [Populus trichocarpa]

 Score =  115 bits (289), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 58/81 (71%), Positives = 64/81 (79%)

Query: 73  DSLCHGLHDWLDLSLNHTVPSSLLILSRAFYASGEASPEKAGQATLSFLPDKIVDTVGVT 132
           D +   L DWLDLSLNH+VPSSLLILSRAF  SG+  PE+A QATLS LPD++VDTVGVT
Sbjct: 353 DEMRQQLRDWLDLSLNHSVPSSLLILSRAFSVSGKVRPEEAVQATLSSLPDEVVDTVGVT 412

Query: 133 TLPLEDSVLGSRRKLEFLEMQ 153
            LP ED V   RRKLEFLEMQ
Sbjct: 413 ALPSEDLVSERRRKLEFLEMQ 433

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413937703|gb|AFW72254.1| hypothetical protein ZEAMMB73_194278, partial [Zea mays]

 Score =  115 bits (289), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 61/87 (70%), Positives = 67/87 (77%), Gaps = 1/87 (1%)

Query: 73  DSLCHGLHDWLDLSLNHTVPSSLLILSRAFYASGEASPEKAGQATLSFLPDKIVDTVGVT 132
           + +   L DWLDLSLNH VPSSLLILSRAF  SG+  PE+A  ATLS LPD++VDTVG T
Sbjct: 450 EEMRQQLRDWLDLSLNHAVPSSLLILSRAFTVSGKVKPEEAVVATLSSLPDEVVDTVG-T 508

Query: 133 TLPLEDSVLGSRRKLEFLEMQEEPIKV 159
            LP EDSV   RRKLEFLEMQEE IKV
Sbjct: 509 VLPSEDSVSERRRKLEFLEMQEELIKV 535

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357164473|ref|XP_003580065.1| PREDICTED: LETM1 and EF-hand domain-containing protein 1, mitochondrial-like [Brachypodium distachyon]

 Score =  115 bits (288), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 59/85 (69%), Positives = 68/85 (80%), Gaps = 1/85 (1%)

Query: 73  DSLCHGLHDWLDLSLNHTVPSSLLILSRAFYASGEASPEKAGQATLSFLPDKIVDTVGVT 132
           + +CH L DWLDLSLN++VPSSLLILSRAF  SG+  PE+A  ATLS LPD++VDTVG T
Sbjct: 446 EEMCHQLKDWLDLSLNYSVPSSLLILSRAFTVSGKIKPEEAVVATLSSLPDEVVDTVG-T 504

Query: 133 TLPLEDSVLGSRRKLEFLEMQEEPI 157
            LP EDSV   +RKLEFLEMQEE I
Sbjct: 505 VLPSEDSVSERKRKLEFLEMQEELI 529

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434179|ref|XP_002275474.1| PREDICTED: LETM1 and EF-hand domain-containing protein 1, mitochondrial [Vitis vinifera] gi|296084337|emb|CBI24725.3| unnamed protein product [Vitis vinifera]

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 63/118 (53%), Positives = 81/118 (68%), Gaps = 3/118 (2%)

Query: 37  WILKYGKYSECEA--ALSKALITELLKEHYTIDAVANFDSLCHGLHDWLDLSLNHTVPSS 94
           WI    +  + E   +LS+A + E  +E   +  + + + +   L DWLDLSLNH+VPSS
Sbjct: 419 WIKNDDRLIQAEGVESLSEAELREDCRERGML-GLRSVEEMRQQLRDWLDLSLNHSVPSS 477

Query: 95  LLILSRAFYASGEASPEKAGQATLSFLPDKIVDTVGVTTLPLEDSVLGSRRKLEFLEM 152
           LLILSRAF  SG+  PE+A QATLS LPD++VDTVG+T LP EDSV   RRKLE+LEM
Sbjct: 478 LLILSRAFTVSGKVRPEEAVQATLSSLPDEVVDTVGITALPSEDSVSERRRKLEYLEM 535

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	164
TAIR|locus:2034136	736	LETM2 "leucine zipper-EF-hand-	0.658	0.146	0.559	1.3e-23
TAIR|locus:2080502	760	LETM1 "leucine zipper-EF-hand-	0.658	0.142	0.559	2.3e-23
RGD|1359678	739	Letm1 "leucine zipper-EF-hand	0.5	0.110	0.397	2.1e-10
MGI|MGI:1932557	738	Letm1 "leucine zipper-EF-hand	0.5	0.111	0.397	4.3e-10
UNIPROTKB|F1S9F3	721	LETM1 "Uncharacterized protein	0.524	0.119	0.360	2.6e-07
UNIPROTKB|Q5ZK33	752	LETM1 "LETM1 and EF-hand domai	0.463	0.101	0.389	2.7e-07
UNIPROTKB|K7GSE0	782	LETM1 "Uncharacterized protein	0.524	0.109	0.360	2.9e-07
UNIPROTKB|O95202	739	LETM1 "LETM1 and EF-hand domai	0.5	0.110	0.385	4.4e-07
UNIPROTKB|E2RHA5	741	LETM1 "Uncharacterized protein	0.5	0.110	0.373	9.2e-07
UNIPROTKB|F1N3R4	732	LETM1 "LETM1 and EF-hand domai	0.5	0.112	0.373	1.5e-06

TAIR|locus:2034136 LETM2 "leucine zipper-EF-hand-containing transmembrane protein 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 281 (104.0 bits), Expect = 1.3e-23, P = 1.3e-23
 Identities = 61/109 (55%), Positives = 80/109 (73%)

Query:    50 ALSKALITELLKEHYTIDAVANFDSLCHGLHDWLDLSLNHTVPSSLLILSRAFYASGEAS 109
             +LS+A + +  +E   +  + + + +   L DWLDLSLNH+VPSSLLILSR+F  +G+  
Sbjct:   402 SLSEAELRQACRERGMLQ-LGSVEEMREQLVDWLDLSLNHSVPSSLLILSRSFSMAGKLK 460

Query:   110 PEKAGQATLSFLPDKIVDTVGVTTLPLEDSVLGSRRKLEFLEMQEEPIK 158
             PE+A QATLS LPD++VDTVGVT L  EDSV   +RKLE+LEMQEE IK
Sbjct:   461 PEEAVQATLSSLPDEVVDTVGVTALSSEDSVSERKRKLEYLEMQEELIK 509

GO:0005509 "calcium ion binding" evidence=IEA;ISS

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2080502 LETM1 "leucine zipper-EF-hand-containing transmembrane protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 279 (103.3 bits), Expect = 2.3e-23, P = 2.3e-23
 Identities = 61/109 (55%), Positives = 78/109 (71%)

Query:    50 ALSKALITELLKEHYTIDAVANFDSLCHGLHDWLDLSLNHTVPSSLLILSRAFYASGEAS 109
             +LS+A + E  +E   +  V+  + +   L DW+DLSLNH+VPSSLLILSRAF  +G   
Sbjct:   423 SLSEAELREDCRERGMLGLVS-VEEMRQQLRDWMDLSLNHSVPSSLLILSRAFTVAGRVK 481

Query:   110 PEKAGQATLSFLPDKIVDTVGVTTLPLEDSVLGSRRKLEFLEMQEEPIK 158
              E A +ATLS LPD++VDTVG+T+LP ED V   RRKLE+LEMQEE IK
Sbjct:   482 AEDAVRATLSSLPDEVVDTVGITSLPSEDPVSERRRKLEYLEMQEELIK 530

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM;IDA

RGD|1359678 Letm1 "leucine zipper-EF-hand containing transmembrane protein 1" [Rattus norvegicus (taxid:10116)]

 Score = 132 (51.5 bits), Expect = 2.1e-10, Sum P(2) = 2.1e-10
 Identities = 33/83 (39%), Positives = 44/83 (53%)

Query:    73 DSLCHGLHDWLDLSLNHTVPSSLLILSRAFYASGEASPEKAGQATLSFLPDKIVDTVGVT 132
             D L   L  WLDL L H +P+SLLILSRA Y     SP    ++TL  LP+ +     V 
Sbjct:   391 DRLKGQLKQWLDLHLYHEIPTSLLILSRAMYLPDTLSPADQLKSTLQTLPEIVAKEAQVK 450

Query:   133 TLPLEDSVLGSRRKLEFLEMQEE 155
                +E   + ++ KLE   +QEE
Sbjct:   451 AAEVEGEQVDNKAKLE-ATLQEE 472

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISO

GO:0005743 "mitochondrial inner membrane" evidence=IEA;ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0042407 "cristae formation" evidence=IEA;ISO

MGI|MGI:1932557 Letm1 "leucine zipper-EF-hand containing transmembrane protein 1" [Mus musculus (taxid:10090)]

 Score = 135 (52.6 bits), Expect = 4.3e-10, Sum P(2) = 4.3e-10
 Identities = 33/83 (39%), Positives = 45/83 (54%)

Query:    73 DSLCHGLHDWLDLSLNHTVPSSLLILSRAFYASGEASPEKAGQATLSFLPDKIVDTVGVT 132
             D L   L  WLDL L+H +P+SLLILSRA Y     SP    ++TL  LP+ +     V 
Sbjct:   391 DRLKGQLKQWLDLHLHHEIPTSLLILSRAMYLPDTLSPADQLKSTLQTLPEIVAKEAQVK 450

Query:   133 TLPLEDSVLGSRRKLEFLEMQEE 155
                +E   + ++ KLE   +QEE
Sbjct:   451 VAEVEGEKVDNKAKLE-ATLQEE 472

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=ISO;IDA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0042407 "cristae formation" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|F1S9F3 LETM1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 129 (50.5 bits), Expect = 2.6e-07, P = 2.6e-07
 Identities = 31/86 (36%), Positives = 45/86 (52%)

Query:    73 DSLCHGLHDWLDLSLNHTVPSSLLILSRAFYASGEASPEKAGQATLSFLPDKIVDTVGVT 132
             D L   L  WL+L L+  +P+SLLILSRA Y     SP    ++TL  LP+ +     V 
Sbjct:   373 DRLRDQLKQWLELHLHQEIPTSLLILSRAMYLPDTLSPADQLKSTLQTLPEIVAKEAQVK 432

Query:   133 TLPLEDSVLGSRRKLEFLEMQEEPIK 158
                +E   + ++ KLE    +EE I+
Sbjct:   433 AAEVEGEQVDNKAKLEATLQEEEAIR 458

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|Q5ZK33 LETM1 "LETM1 and EF-hand domain-containing protein 1, mitochondrial" [Gallus gallus (taxid:9031)]

 Score = 129 (50.5 bits), Expect = 2.7e-07, P = 2.7e-07
 Identities = 30/77 (38%), Positives = 41/77 (53%)

Query:    79 LHDWLDLSLNHTVPSSLLILSRAFYASGEASPEKAGQATLSFLPDKIVDTVGVTTLPLED 138
             L  WLDL LN  +P+SLLILSRA Y     SP    + TL  LP+ +     V    +E 
Sbjct:   395 LKQWLDLHLNQEIPTSLLILSRAMYLPDTLSPADQLKTTLQTLPESVAKEAQVKVAEVEG 454

Query:   139 SVLGSRRKLEFLEMQEE 155
               + ++ +LE   +QEE
Sbjct:   455 EKVDNKARLE-ATLQEE 470

GO:0005509 "calcium ion binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0042407 "cristae formation" evidence=IEA

UNIPROTKB|K7GSE0 LETM1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 129 (50.5 bits), Expect = 2.9e-07, P = 2.9e-07
 Identities = 31/86 (36%), Positives = 45/86 (52%)

Query:    73 DSLCHGLHDWLDLSLNHTVPSSLLILSRAFYASGEASPEKAGQATLSFLPDKIVDTVGVT 132
             D L   L  WL+L L+  +P+SLLILSRA Y     SP    ++TL  LP+ +     V 
Sbjct:   434 DRLRDQLKQWLELHLHQEIPTSLLILSRAMYLPDTLSPADQLKSTLQTLPEIVAKEAQVK 493

Query:   133 TLPLEDSVLGSRRKLEFLEMQEEPIK 158
                +E   + ++ KLE    +EE I+
Sbjct:   494 AAEVEGEQVDNKAKLEATLQEEEAIR 519

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|O95202 LETM1 "LETM1 and EF-hand domain-containing protein 1, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 127 (49.8 bits), Expect = 4.4e-07, P = 4.4e-07
 Identities = 32/83 (38%), Positives = 44/83 (53%)

Query:    73 DSLCHGLHDWLDLSLNHTVPSSLLILSRAFYASGEASPEKAGQATLSFLPDKIVDTVGVT 132
             D L   L  WLDL L+  +P+SLLILSRA Y     SP    ++TL  LP+ +     V 
Sbjct:   392 DRLRGQLKQWLDLHLHQEIPTSLLILSRAMYLPDTLSPADQLKSTLQTLPEIVAKEAQVK 451

Query:   133 TLPLEDSVLGSRRKLEFLEMQEE 155
                +E   + ++ KLE   +QEE
Sbjct:   452 VAEVEGEQVDNKAKLE-ATLQEE 473

GO:0005509 "calcium ion binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0042407 "cristae formation" evidence=IMP

GO:0005739 "mitochondrion" evidence=ISS;IDA

UNIPROTKB|E2RHA5 LETM1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 124 (48.7 bits), Expect = 9.2e-07, P = 9.2e-07
 Identities = 31/83 (37%), Positives = 44/83 (53%)

Query:    73 DSLCHGLHDWLDLSLNHTVPSSLLILSRAFYASGEASPEKAGQATLSFLPDKIVDTVGVT 132
             D L   L  WL+L L+  +P+SLLILSRA Y     SP    ++TL  LP+ +     V 
Sbjct:   391 DRLRDQLKQWLELHLHQEIPTSLLILSRAMYLPDTLSPADQLKSTLQTLPEIVAKEAQVK 450

Query:   133 TLPLEDSVLGSRRKLEFLEMQEE 155
                +E   + ++ KLE   +QEE
Sbjct:   451 VAEVEGEQVDNKAKLE-ATLQEE 472

GO:0042407 "cristae formation" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|F1N3R4 LETM1 "LETM1 and EF-hand domain-containing protein 1, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 122 (48.0 bits), Expect = 1.5e-06, P = 1.5e-06
 Identities = 31/83 (37%), Positives = 44/83 (53%)

Query:    73 DSLCHGLHDWLDLSLNHTVPSSLLILSRAFYASGEASPEKAGQATLSFLPDKIVDTVGVT 132
             D L   L  WL+L L+  +P+SLLILSRA Y     SP    ++TL  LP+ +     V 
Sbjct:   378 DRLRGQLKQWLELHLHQEIPTSLLILSRAMYLPETLSPADQLKSTLQTLPEIVAKEAQVK 437

Query:   133 TLPLEDSVLGSRRKLEFLEMQEE 155
                +E   + ++ KLE   +QEE
Sbjct:   438 VAEVEGEQVDNKAKLE-ATLQEE 459

GO:0042407 "cristae formation" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_VIII000678 hypothetical protein (687 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	164
pfam07766	268	pfam07766, LETM1, LETM1-like protein	6e-04

>gnl|CDD|219562 pfam07766, LETM1, LETM1-like protein

 Score = 38.4 bits (90), Expect = 6e-04
 Identities = 16/27 (59%), Positives = 20/27 (74%)

Query: 73  DSLCHGLHDWLDLSLNHTVPSSLLILS 99
           + L   L +WLDLSLN  VPS+LL+LS
Sbjct: 242 ERLRDQLQEWLDLSLNEKVPSTLLLLS 268

Members of this family are inner mitochondrial membrane proteins which play a role in potassium and hydrogen ion exchange. Deletion of LETM1 is thought to be involved in the development of Wolf-Hirschhorn syndrome in humans. Length = 268

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	164
KOG1043	499	consensus Ca2+-binding transmembrane protein LETM1	99.94
PF07766	268	LETM1: LETM1-like protein; InterPro: IPR011685 Thi	99.69
KOG4263	299	consensus Putative receptor CCR1 [Signal transduct	96.95
PF02037	35	SAP: SAP domain; InterPro: IPR003034 The SAP (afte	96.62
smart00513	35	SAP Putative DNA-binding (bihelical) motif predict	96.37

>KOG1043 consensus Ca2+-binding transmembrane protein LETM1/MRS7 [Function unknown]

Probab=99.94  E-value=3.4e-28  Score=222.79  Aligned_cols=147  Identities=24%  Similarity=0.237  Sum_probs=136.2

Q ss_pred             cccccCCccchhhhccccccccccchhhhhhhhhhhh-hhcCCHHHHHHHHHHhcCCcc-CCChhHHHHHHHHHhhcccC
Q 031182           11 KVRFLNNNFQPACCTWSRPYFCSFKNWILKYGKYSEC-EAALSKALITELLKEHYTIDA-VANFDSLCHGLHDWLDLSLN   88 (164)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~y~EG-vdsLS~~ELq~AC~ssRGmr~-~vs~e~Lr~qL~qWLdL~L~   88 (164)
                      .-+||+||.++|=++.+.+++-.+|.=|..     || |++||..||+.||++ ||||+ +|++++|++||.+|+|||++
T Consensus       307 l~~~Gt~~~lr~~lr~kik~ik~dD~~I~~-----eg~v~~ls~~el~~aC~~-rgmra~gv~~e~l~~ql~~wldlsl~  380 (499)
T KOG1043|consen  307 LNSFGTDKLLRYQLRKKIKEIKKDDKHIAT-----EGAVESLSLLELQIACRE-RGMRALGVSEERLREQLRVWLDLSLD  380 (499)
T ss_pred             ccccCchHHHHHHHHHHHHHhcccccchhh-----hhhhhHhhHHHHHHHHHh-hhcchhccchhhhhHHHHHHHhhhcc
Confidence            358999999999999999999999876655     99 999999999999996 99998 59999999999999999999


Q ss_pred             CCCChHHHHHHhhhhcCCCCChHHhHHHHHhc-CChhhHhhhhcccccCCccccchhhhHHHhHhhhhhhHhhhhc
Q 031182           89 HTVPSSLLILSRAFYASGEASPEKAGQATLSF-LPDKIVDTVGVTTLPLEDSVLGSRRKLEFLEMQEEPIKVFDTT  163 (164)
Q Consensus        89 ~~IPssLLiLSrAf~~~~~~s~~daLkatLSS-LPDevv~ea~v~v~e~E~~~~d~K~KLevLkeQEElIkeE~e~  163 (164)
                      ++|||+||+|||+|++++.....+++.++|+. +||.+....+..+.+.+++.++++.|++.|++||+.|.+|.++
T Consensus       381 ~~vps~lL~Lsr~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~l~~~e~~~~~e~ee  456 (499)
T KOG1043|consen  381 KKVPSVLLLLSRTFSLGQNSKAPSSSSGKLQIAAPDDLEKLEKLKKEESELGAVDRKKKLELLREGEEIISEEEEE  456 (499)
T ss_pred             ccCchHHHHHhhhhhhhhcccCCchhhhHhhhhccccHHHhcccccccccccccchHHHHHhhhccccccchhhhc
Confidence            99999999999999999887778888888885 9999999988888888888999999999999999999999875

>PF07766 LETM1: LETM1-like protein; InterPro: IPR011685 This is a group of mainly hypothetical eukaryotic proteins

Probab=99.69  E-value=9e-18  Score=142.43  Aligned_cols=83  Identities=25%  Similarity=0.255  Sum_probs=66.4

Q ss_pred             cccccCCccchhhhccccccccccchhhhhhhhhhhhhhcCCHHHHHHHHHHhcCCcc-CCChhHHHHHHHHHhhcccCC
Q 031182           11 KVRFLNNNFQPACCTWSRPYFCSFKNWILKYGKYSECEAALSKALITELLKEHYTIDA-VANFDSLCHGLHDWLDLSLNH   89 (164)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~y~EGvdsLS~~ELq~AC~ssRGmr~-~vs~e~Lr~qL~qWLdL~L~~   89 (164)
                      --||+.++++++.++....++..+|.=|.+     |||++||.+||+.||.+ |||++ ++|+++||++|.+||+||++.
T Consensus       185 l~~~~~~~~lr~rL~~~~~~l~~dD~~i~~-----eGv~~Ls~~EL~~Ac~~-RGl~~~~~s~~~lr~~L~~WL~ls~~~  258 (268)
T PF07766_consen  185 LTPFGPSSLLRRRLRKRLRYLKQDDRLIKR-----EGVDSLSEEELQDACYE-RGLRSTGLSEEELREWLKQWLQLSSNK  258 (268)
T ss_dssp             ----SSHHHHHHHHHHHHHHHHHHHHHHHH-----H-GGGS-HHHHHHHHHH-TT---TT--HHHHHHHHHHHHHHHHTS
T ss_pred             cCcCCchHHHHHHHHHHHHHHHHHHHHHHH-----hccccCCHHHHHHHHHH-hCCCcCCCCHHHHHHHHHHHHHHHccC
Confidence            458999999999999999999999988888     99999999999999996 99997 599999999999999999999


Q ss_pred             CCChHHHHHH
Q 031182           90 TVPSSLLILS   99 (164)
Q Consensus        90 ~IPssLLiLS   99 (164)
                      ++|+++|+||
T Consensus       259 ~~p~~lLlL~  268 (268)
T PF07766_consen  259 KVPSSLLLLH  268 (268)
T ss_dssp             ---HHHHHHH
T ss_pred             CCCchhhccC
Confidence            9999999997

Putative features found in LETM1, such as a transmembrane domain and a CK2 and PKC phosphorylation site [], are relatively conserved throughout the family. Deletion of LETM1 is thought to be involved in the development of Wolf-Hirschhorn syndrome in humans []. A member of this family, P91927 from SWISSPROT, is known to be expressed in the mitochondria of Drosophila melanogaster [], suggesting that this may be a group of mitochondrial proteins.; PDB: 3SKQ_A.

>KOG4263 consensus Putative receptor CCR1 [Signal transduction mechanisms]

Probab=96.95  E-value=0.001  Score=58.52  Aligned_cols=55  Identities=13%  Similarity=0.120  Sum_probs=45.6

Q ss_pred             hhhhhhcCCHHHHHHHHHHhcCCccC-CChhHHHHHHHHHhhcccCCCCChHHHHHH
Q 031182           44 YSECEAALSKALITELLKEHYTIDAV-ANFDSLCHGLHDWLDLSLNHTVPSSLLILS   99 (164)
Q Consensus        44 y~EGvdsLS~~ELq~AC~ssRGmr~~-vs~e~Lr~qL~qWLdL~L~~~IPssLLiLS   99 (164)
                      .-+||++|+..||..||=- ||+..+ .++++||+.|.+|+..+-.=+-|--.|++-
T Consensus       230 ~~~gi~~lt~~~l~~~CYl-Rgln~~~~~~~~mr~wLr~wvkiS~Slk~~~~slllh  285 (299)
T KOG4263|consen  230 AKLGIGQLTAQELKSACYL-RGLNSTHIGEDRMRTWLREWVKISCSLKEAELSLLLH  285 (299)
T ss_pred             HHhccccCCHHHHHHHhhh-ccCCCCccChHHHHHHHHHHHhhhhcccccchhhhhh
Confidence            4499999999999999997 999986 899999999999999887544444444443

>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []

Probab=96.62  E-value=0.0036  Score=38.69  Aligned_cols=34  Identities=26%  Similarity=0.289  Sum_probs=30.3

Q ss_pred             hcCCHHHHHHHHHHhcCCccCCChhHHHHHHHHHh
Q 031182           49 AALSKALITELLKEHYTIDAVANFDSLCHGLHDWL   83 (164)
Q Consensus        49 dsLS~~ELq~AC~ssRGmr~~vs~e~Lr~qL~qWL   83 (164)
                      .+|+++||++.|++ ||+.+..+.++|.+-|.+|+
T Consensus         2 ~~l~v~eLk~~l~~-~gL~~~G~K~~Li~Rl~~~l   35 (35)
T PF02037_consen    2 SKLTVAELKEELKE-RGLSTSGKKAELIERLKEHL   35 (35)
T ss_dssp             TTSHHHHHHHHHHH-TTS-STSSHHHHHHHHHHHH
T ss_pred             CcCcHHHHHHHHHH-CCCCCCCCHHHHHHHHHHhC
Confidence            57899999999996 99999999999999999885

In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....

>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation

Probab=96.37  E-value=0.0073  Score=36.97  Aligned_cols=34  Identities=21%  Similarity=0.199  Sum_probs=30.9

Q ss_pred             hcCCHHHHHHHHHHhcCCccCCChhHHHHHHHHHh
Q 031182           49 AALSKALITELLKEHYTIDAVANFDSLCHGLHDWL   83 (164)
Q Consensus        49 dsLS~~ELq~AC~ssRGmr~~vs~e~Lr~qL~qWL   83 (164)
                      .+|+.+||++.|++ +|+.+..+.++|.+-+.+|+
T Consensus         2 ~~l~~~~Lk~~l~~-~gl~~~G~K~~Lv~Rl~~~~   35 (35)
T smart00513        2 AKLKVSELKDELKK-RGLSTSGTKAELVDRLLEAL   35 (35)
T ss_pred             CcCcHHHHHHHHHH-cCCCCCCCHHHHHHHHHHhC
Confidence            57999999999996 99999889999999998875

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	164
3skq_A	249	Mitochondrial distribution and morphology protein;	4e-08

>3skq_A Mitochondrial distribution and morphology protein; 14-3-3-like membrane protein, mitochondrial ribosome, respir chain biogenesis; 2.10A {Saccharomyces cerevisiae} Length = 249

 Score = 49.7 bits (118), Expect = 4e-08
 Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 2/63 (3%)

Query: 73  DSLCHGLHDWLDLSLNHTVPSSLLILSRAFYASGEASPEKAGQATLSFLPDKIVDTVGVT 132
           + L   L  WL+L L   +PS L++LS  F   G   P++      S L +K        
Sbjct: 169 EDLVDNLKVWLELRLRQKIPSVLMVLSSTFTFGG--LPKENYSKAFSPLAEKKETKSKYD 226

Query: 133 TLP 135
            L 
Sbjct: 227 DLL 229

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	164
3skq_A	249	Mitochondrial distribution and morphology protein;	100.0
2do1_A	55	Nuclear protein HCC-1; SAP domain, structural geno	95.67
1zrj_A	50	E1B-55KDA-associated protein 5 isoform C; SAP doma	94.63
2rnn_A	114	E3 SUMO-protein ligase SIZ1; SUMO ligase, DNA bind	94.55
1h1j_S	51	THO1 protein; SAP domain, DNA binding; NMR {Saccha	93.54
2kvu_A	75	MKL/myocardin-like protein 1; SAP motif, DNA/RNA b	93.32
1jjr_A	151	KU70, thyroid autoantigen; DNA repair protein, pro	87.2
1jjr_A	151	KU70, thyroid autoantigen; DNA repair protein, pro	83.14

>3skq_A Mitochondrial distribution and morphology protein; 14-3-3-like membrane protein, mitochondrial ribosome, respir chain biogenesis; 2.10A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.2e-34  Score=242.74  Aligned_cols=110  Identities=23%  Similarity=0.226  Sum_probs=104.5

Q ss_pred             ccccCCccchhhhccccccccccchhhhhhhhhhhhhhcCCHHHHHHHHHHhcCCccC-CChhHHHHHHHHHhhcccCCC
Q 031182           12 VRFLNNNFQPACCTWSRPYFCSFKNWILKYGKYSECEAALSKALITELLKEHYTIDAV-ANFDSLCHGLHDWLDLSLNHT   90 (164)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~y~EGvdsLS~~ELq~AC~ssRGmr~~-vs~e~Lr~qL~qWLdL~L~~~   90 (164)
                      -|||.++|+|+.++.....|-++|.=|.+     |||++||.+||+.||++ |||++. +|+++||+||.+||+||++++
T Consensus       113 ~p~gt~~~LR~rLr~rl~~I~~DDr~I~~-----EGV~sLs~~ELr~AC~~-RGm~~~gls~e~LR~~L~~WL~Lsl~~~  186 (249)
T 3skq_A          113 RPFGNDNMLRYQIRSKLKDIMNDDKTIDY-----EGVESLSQEELYQACVS-RGMKAYGVSKEDLVDNLKVWLELRLRQK  186 (249)
T ss_dssp             CCCSSHHHHHHHHHHHHHHHHHHHHHHHH-----HCGGGSCHHHHHHHHHH-TTCCCTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred             CCCCChHHHHHHHHHHHHHHHHhhHHHHH-----hCcccCCHHHHHHHHHH-cCCCCCCCCHHHHHHHHHHHHHHHccCC
Confidence            48999999999999999999999998888     99999999999999996 999985 999999999999999999999


Q ss_pred             CChHHHHHHhhhhcCCCC--------------------------ChHHhHHHHHhcCChhhHh
Q 031182           91 VPSSLLILSRAFYASGEA--------------------------SPEKAGQATLSFLPDKIVD  127 (164)
Q Consensus        91 IPssLLiLSrAf~~~~~~--------------------------s~~daLkatLSSLPDevv~  127 (164)
                      ||+|||||||||+|++..                          ++||||.+|||||||+|||
T Consensus       187 vPssLLilSra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~vls~ipd~vyn  249 (249)
T 3skq_A          187 IPSVLMVLSSTFTFGGLPKENYSKAFSPLAEKKETKSKYDDLLDLYYDGILQVLSSIPDPVYN  249 (249)
T ss_dssp             CCHHHHHHHHGGGSSSCCCCCCEEEECHHHHTSSSCCHHHHHHHHHHHHHHHHHHHSCCTTTC
T ss_pred             CCHHHHHHHHHHHccCcchhhhhhhccchhhhhhccchhhhhHHHHHHHHHHHHccCCccccC
Confidence            999999999999999852                          5789999999999999996

>2do1_A Nuclear protein HCC-1; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1

Probab=95.67  E-value=0.015  Score=38.90  Aligned_cols=45  Identities=20%  Similarity=0.180  Sum_probs=38.5

Q ss_pred             hhcCCHHHHHHHHHHhcCCccCCChhHHHHHHHHHhhcccCCCCChH
Q 031182           48 EAALSKALITELLKEHYTIDAVANFDSLCHGLHDWLDLSLNHTVPSS   94 (164)
Q Consensus        48 vdsLS~~ELq~AC~ssRGmr~~vs~e~Lr~qL~qWLdL~L~~~IPss   94 (164)
                      +..|+++||...|+. ||+.+.....+|-+.|.++++=. .+.+|+|
T Consensus        10 l~klkV~eLK~~L~~-rGL~~~G~KaeLieRL~~~l~~~-~~~~~~~   54 (55)
T 2do1_A           10 LHKLKLAELKQECLA-RGLETKGIKQDLIHRLQAYLEEH-AESGPSS   54 (55)
T ss_dssp             TTTSCHHHHHHHHHH-HTCCCCSCHHHHHHHHHHHHHHT-CCSCCCC
T ss_pred             HHHCcHHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHhcC-cccccCC
Confidence            568999999999996 99998889999999999999877 3446653

>1zrj_A E1B-55KDA-associated protein 5 isoform C; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1

Probab=94.63  E-value=0.06  Score=35.31  Aligned_cols=37  Identities=19%  Similarity=0.086  Sum_probs=33.1

Q ss_pred             hhhcCCHHHHHHHHHHhcCCccCCChhHHHHHHHHHhh
Q 031182           47 CEAALSKALITELLKEHYTIDAVANFDSLCHGLHDWLD   84 (164)
Q Consensus        47 GvdsLS~~ELq~AC~ssRGmr~~vs~e~Lr~qL~qWLd   84 (164)
                      .+..|++.||++.|+. ||+.+....++|-+.|.++++
T Consensus         9 ~~~klkV~eLK~eLk~-RgL~~~G~Ka~Li~RL~~~~~   45 (50)
T 1zrj_A            9 DVRRLKVNELREELQR-RGLDTRGLKAELAERLQAALS   45 (50)
T ss_dssp             CGGGSCHHHHHHHHHH-TTCCCCSCHHHHHHHHHHHHC
T ss_pred             CHHHCcHHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHh
Confidence            4678999999999996 999988889999999999875

>2rnn_A E3 SUMO-protein ligase SIZ1; SUMO ligase, DNA binding, sumoylation, metal-binding, nucLeu phosphoprotein, UBL conjugation pathway; NMR {Saccharomyces cerevisiae}

Probab=94.55  E-value=0.21  Score=37.87  Aligned_cols=73  Identities=8%  Similarity=-0.001  Sum_probs=51.2

Q ss_pred             hhhhcCCHHHHHHHHHHhcCCccCCChhHHHHHHHHHhhcccCC-CCChHHHHHHhhhh----cCCCCChHHhHHHHHh
Q 031182           46 ECEAALSKALITELLKEHYTIDAVANFDSLCHGLHDWLDLSLNH-TVPSSLLILSRAFY----ASGEASPEKAGQATLS  119 (164)
Q Consensus        46 EGvdsLS~~ELq~AC~ssRGmr~~vs~e~Lr~qL~qWLdL~L~~-~IPssLLiLSrAf~----~~~~~s~~daLkatLS  119 (164)
                      ..+..|+++||...|++ +|+.+...+.+|-+.+.+||+-+.+. ..-+.-+.=.|++-    .++..+.++.|-.+|.
T Consensus        35 ~~l~kLtVaELK~~cr~-~GL~~sGkKaeLi~RI~~yl~~~~~~g~~D~~rl~ai~~lI~~~~~g~plP~~~~l~~alr  112 (114)
T 2rnn_A           35 TLMELLKVSELKDICRS-VSFPVSGRKAVLQDLIRNFLQNALVVGKSDPYRVQAVKFLIERIRKNEPLPVYKDLWNALR  112 (114)
T ss_dssp             HHHTTCCHHHHHHHHHH-TTCCTTSCHHHHHHHHHHHHHHTTCTTCCCHHHHHHHHHHHHHHHHTCCCCCHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHHHH-cCCCcCCcHHHHHHHHHHHHHhccccCCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHh
Confidence            45788999999999996 99998899999999999999877753 23333333223221    2445566666655543

>1h1j_S THO1 protein; SAP domain, DNA binding; NMR {Saccharomyces cerevisiae} SCOP: a.140.2.1 PDB: 2wqg_A

Probab=93.54  E-value=0.14  Score=33.68  Aligned_cols=37  Identities=14%  Similarity=0.083  Sum_probs=32.4

Q ss_pred             hhhcCCHHHHHHHHHHhcCCccCCChhHHHHHHHHHhh
Q 031182           47 CEAALSKALITELLKEHYTIDAVANFDSLCHGLHDWLD   84 (164)
Q Consensus        47 GvdsLS~~ELq~AC~ssRGmr~~vs~e~Lr~qL~qWLd   84 (164)
                      .+..|++.||.+.|+. ||+.+....++|-+.|.++.+
T Consensus         4 ~~~kltV~eLK~~Lk~-RGL~~~G~KadLieRL~~~~~   40 (51)
T 1h1j_S            4 DYSSLTVVQLKDLLTK-RNLSVGGLKNELVQRLIKDDE   40 (51)
T ss_dssp             SGGGCCHHHHHHHHHH-TTCCCCSSHHHHHHHHHHHHH
T ss_pred             hHHHCcHHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHH
Confidence            3578999999999996 999988889999999988754

>2kvu_A MKL/myocardin-like protein 1; SAP motif, DNA/RNA binding, structural genomics, northeast structural genomics consortium (NESG), PSI-2; NMR {Homo sapiens} PDB: 2kw9_A

Probab=93.32  E-value=0.12  Score=36.68  Aligned_cols=40  Identities=15%  Similarity=0.094  Sum_probs=35.4

Q ss_pred             hhhhcCCHHHHHHHHHHhcCCccCCChhHHHHHHHHHhhcc
Q 031182           46 ECEAALSKALITELLKEHYTIDAVANFDSLCHGLHDWLDLS   86 (164)
Q Consensus        46 EGvdsLS~~ELq~AC~ssRGmr~~vs~e~Lr~qL~qWLdL~   86 (164)
                      ..+..|++.||++.|+. ||+.+.....+|-+.|.++++-.
T Consensus        24 ~~l~klkVaeLK~eLk~-RGL~~sG~KaeLIeRL~~~~~~~   63 (75)
T 2kvu_A           24 ANLDDMKVAELKQELKL-RSLPVSGTKTELIERLRAYQDQI   63 (75)
T ss_dssp             TTTTTSCHHHHHHHHHH-TTCCCCSCHHHHHHHHHHHHHTT
T ss_pred             HHHHHCcHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHHHcc
Confidence            45789999999999996 99998889999999999998653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	164
d1jeqa1	51	DNA binding C-terminal domain of ku70 {Human (Homo	95.69
d1h1js_	44	S/mar DNA-binding protein Tho1 {Baker's yeast (Sac	95.04
d1zrja1	37	Heterogeneous nuclear ribonucleoprotein U-like pro	93.77

>d1jeqa1 a.140.2.1 (A:559-609) DNA binding C-terminal domain of ku70 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: LEM/SAP HeH motif
superfamily: SAP domain
family: SAP domain
domain: DNA binding C-terminal domain of ku70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.69  E-value=0.0085  Score=37.98  Aligned_cols=38  Identities=11%  Similarity=0.198  Sum_probs=34.5

Q ss_pred             hhhhcCCHHHHHHHHHHhcCCccCCChhHHHHHHHHHhh
Q 031182           46 ECEAALSKALITELLKEHYTIDAVANFDSLCHGLHDWLD   84 (164)
Q Consensus        46 EGvdsLS~~ELq~AC~ssRGmr~~vs~e~Lr~qL~qWLd   84 (164)
                      ..+..|++++|.+.|++ ||++.....++|-+-+..|++
T Consensus        13 ~~L~kltV~~LK~~lk~-~gL~~sGkKa~Li~Ri~~~l~   50 (51)
T d1jeqa1          13 GTLGKFTVPMLKEACRA-YGLKSGLKKQELLEALTKHFQ   50 (51)
T ss_dssp             TCGGGCCHHHHHHHHHH-TTCCCCSSHHHHHHHHHHHHT
T ss_pred             CcHhhCcHHHHHHHHHH-cCCCCCCcHHHHHHHHHHHhh
Confidence            45899999999999996 999998899999999999874

>d1h1js_ a.140.2.1 (S:) S/mar DNA-binding protein Tho1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: LEM/SAP HeH motif
superfamily: SAP domain
family: SAP domain
domain: S/mar DNA-binding protein Tho1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.04  E-value=0.019  Score=35.31  Aligned_cols=34  Identities=15%  Similarity=0.134  Sum_probs=30.6

Q ss_pred             hhcCCHHHHHHHHHHhcCCccCCChhHHHHHHHHH
Q 031182           48 EAALSKALITELLKEHYTIDAVANFDSLCHGLHDW   82 (164)
Q Consensus        48 vdsLS~~ELq~AC~ssRGmr~~vs~e~Lr~qL~qW   82 (164)
                      ..+|+++||...|++ ||+......++|-+.|.++
T Consensus         5 y~~ltv~eLK~~lk~-rgL~~sG~Ka~Li~RL~~~   38 (44)
T d1h1js_           5 YSSLTVVQLKDLLTK-RNLSVGGLKNELVQRLIKD   38 (44)
T ss_dssp             GGGCCHHHHHHHHHH-TTCCCCSSHHHHHHHHHHH
T ss_pred             HHHCcHHHHHHHHHH-CCCCCCCCHHHHHHHHHHH
Confidence            568999999999996 9999988999999888876

>d1zrja1 a.140.2.1 (A:1-37) Heterogeneous nuclear ribonucleoprotein U-like protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: LEM/SAP HeH motif
superfamily: SAP domain
family: SAP domain
domain: Heterogeneous nuclear ribonucleoprotein U-like protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.77  E-value=0.063  Score=31.88  Aligned_cols=33  Identities=18%  Similarity=0.119  Sum_probs=29.1

Q ss_pred             hhcCCHHHHHHHHHHhcCCccCCChhHHHHHHHH
Q 031182           48 EAALSKALITELLKEHYTIDAVANFDSLCHGLHD   81 (164)
Q Consensus        48 vdsLS~~ELq~AC~ssRGmr~~vs~e~Lr~qL~q   81 (164)
                      ++.|+++||.+.|+. ||+.+....++|-+-|.+
T Consensus         3 ~~~m~V~eLK~~Lk~-rgL~~sG~Ka~Li~RL~~   35 (37)
T d1zrja1           3 VRRLKVNELREELQR-RGLDTRGLKAELAERLQA   35 (37)
T ss_dssp             GGGSCHHHHHHHHHH-TTCCCCSCHHHHHHHHHH
T ss_pred             hHHCcHHHHHHHHHH-CCCCCCCCHHHHHHHHHH
Confidence            578999999999996 999998889888887765