Citrus Sinensis ID: 031185

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160----
Protein Sequence
MRQPFGQLKVTVVQGKRLVIRDFKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEPVGVLSLEVFDKDRFKADDKMGKAYLNLQPIISAARLRHLVHVSSGETPLRKIIPDSENCLARESSIICINGEVVQNVWLRLCEVESGEIELKVKIVDAPSR
Secondary Structure (PSIPRED)
cccccEEEEEEEEEccccccccccccccEEEEEEccEEEEEEccccccccccccEEEEEEEccccEEEEEEEEccccccccccEEEEEcccHHHHHEEEEEccccccccEEEEEEEccccccccccccEEEEccEEEEEEEEEccccccEEEEEEEEEEccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEEEEEEEccEEEEEcccccccEEEEEEcccEEEEEEEccccccccccEEEEEEccccccEEEEEEEccccccccccccEEEcHHHHHHHHHHHHccccccccEEEEEEEcccccEEccccEEEEEccEEEEEEEEEEEcccccEEEEEEEEEEcccc
Coil and Loop (DISEMBL)
MRQPFGQLKVTVVQGKRLvirdfkssdpYVVLKLGNQMAKTKVINSClnpvwneehslsltepvgvlslevfdkdrfkadDKMGKAYLNLQPIISAARLRHLVHvssgetplrkiipdsenclaressiicinGEVVQNVWLRLCEVESGEIELKVKIVDAPSR
Flexible Loop (DISEMBL)
mrqpfgqlkvtvvqgkrlvirdfkssdpyVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEPVGVLSLEVFDKDRFKADDKMGKAYLNLQPIISAARLRHLVHvssgetplrkiipdseNCLARESSIICINGEVVQNVWLRLCevesgeielkvkivdapsr
Low Complexity Region (SEG)
MRQPFGQLKVTVVQGKRLVIRDFKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEPVGVLSLEVFDKDRFKADDKMGKAYLNLQPIISAARLRHLVHVSSGETPLRKIIPDSENCLARESSIICINGEVVQNVWLRLCEVESGEIELKVKIVDAPSR
Disordered region (IsUnstruct)
******QLKVTVVQGKRLVIRDFKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEPVGVLSLEVFDKDRFKADDKMGKAYLNLQPIISAARLRHLVHVSSGETPLRKIIPDSENCLARESSIICINGEVVQNVWLRLCEVESGEIELKVKIV*****
Disordered Region (DISOPRED)
**QPFGQLKVTVVQGKRLVIRDFKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEPVGVLSLEVFDKDRFKADDKMGKAYLNLQPIISAARLRHLVHVSSGETPLRKIIPDSENCLARESSIICINGEVVQNVWLRLCEVESGEIELKVKIVDAPS*
Disordered Region (DISEMBL)
MRQPFGQLKVTVVQGKRLVIRDFKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEPVGVLSLEVFDKDRFKADDKMGKAYLNLQPIISAARLRHLVHVSSGETPLRKIIPDSENCLARESSIICINGEVVQNVWLRLCEVESGEIELKVKIVDAPSR
Disordered Region (DISPRO)
*RQPFGQLKVTVVQGKRLVIRDFKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEPVGVLSLEVFDKDRFKADDKMGKAYLNLQPIISAARLRHLVHVSSGETPLRKIIPDSENCLARESSIICINGEVVQNVWLRLCEVESGEIELKVKIVDAPS*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRQPFGQLKVTVVQGKRLVIRDFKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEPVGVLSLEVFDKDRFKADDKMGKAYLNLQPIISAARLRHLVHVSSGETPLRKIIPDSENCLARESSIICINGEVVQNVWLRLCEVESGEIELKVKIVDAPSR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	164	2.2.26 [Sep-21-2011]
Q8LFN9	336	Probable ADP-ribosylation	no	no	0.951	0.464	0.445	1e-28
Q9FVJ3	337	ADP-ribosylation factor G	no	no	0.951	0.462	0.439	2e-28
Q8L7A4	385	Probable ADP-ribosylation	no	no	0.920	0.392	0.423	4e-27
Q6DN14	999	Multiple C2 and transmemb	yes	no	0.652	0.107	0.321	3e-09
Q28BX9	1014	C2 domain-containing prot	no	no	0.518	0.083	0.363	5e-09
O14065	1429	Uncharacterized protein C	yes	no	0.518	0.059	0.425	6e-09
Q7XA06	540	Synaptotagmin-3 OS=Arabid	no	no	0.597	0.181	0.359	7e-09
Q9ZVT9	1020	C2 and GRAM domain-contai	no	no	0.548	0.088	0.351	7e-09
Q54E35	570	Rho GTPase-activating pro	no	no	0.518	0.149	0.360	1e-08
Q86KB1	617	Arrestin domain-containin	no	no	0.560	0.149	0.350	1e-08

>sp|Q8LFN9|AGD13_ARATH Probable ADP-ribosylation factor GTPase-activating protein AGD13 OS=Arabidopsis thaliana GN=AGD13 PE=2 SV=1

 Score =  125 bits (314), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 70/157 (44%), Positives = 102/157 (64%), Gaps = 1/157 (0%)

Query: 1   MRQPFGQLKVTVVQGKRLVIRDFKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSL 60
           M +  G LKVT+ +G  L IRD  SSDPYVVL LG Q  +T V+NS LNPVWN+E  LS+
Sbjct: 175 MVEFIGLLKVTIKKGTNLAIRDMMSSDPYVVLNLGKQKLQTTVMNSNLNPVWNQELMLSV 234

Query: 61  TEPVGVLSLEVFDKDRFKADDKMGKAYLNLQPIISAARLRHLVHVSSGETPLRKIIPDSE 120
            E  G + L+V+D D F ADD MG+A +++QP+I++A       +  G+  + K +   +
Sbjct: 235 PESYGPVKLQVYDYDTFSADDIMGEADIDIQPLITSAMAFGDPEM-FGDMQIGKWLKSHD 293

Query: 121 NCLARESSIICINGEVVQNVWLRLCEVESGEIELKVK 157
           N L  +S I  ++G+V Q V ++L  VESGE+EL+++
Sbjct: 294 NPLIDDSIINIVDGKVKQEVQIKLQNVESGELELEME 330

GTPase-activating protein (GAP) for ADP ribosylation factor (ARF).
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FVJ3|AGD12_ARATH ADP-ribosylation factor GTPase-activating protein AGD12 OS=Arabidopsis thaliana GN=AGD12 PE=1 SV=1

 Score =  124 bits (312), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 69/157 (43%), Positives = 100/157 (63%), Gaps = 1/157 (0%)

Query: 1   MRQPFGQLKVTVVQGKRLVIRDFKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSL 60
           M +  G LKVT+ +G  + IRD  SSDPYVVL LG Q A++ V+ S LNPVWNEE  LS+
Sbjct: 176 MVEFIGLLKVTIKKGTNMAIRDMMSSDPYVVLTLGQQKAQSTVVKSNLNPVWNEELMLSV 235

Query: 61  TEPVGVLSLEVFDKDRFKADDKMGKAYLNLQPIISAARLRHLVHVSSGETPLRKIIPDSE 120
               G + L+VFD D F ADD MG+A +++QP+I++A       +  G+  + K +   +
Sbjct: 236 PHNYGSVKLQVFDYDTFSADDIMGEAEIDIQPLITSAMAFGDPEM-FGDMQIGKWLKSHD 294

Query: 121 NCLARESSIICINGEVVQNVWLRLCEVESGEIELKVK 157
           N L  +S I   +G+V Q V ++L  VESGE+EL+++
Sbjct: 295 NALIEDSIINIADGKVKQEVQIKLQNVESGELELEME 331

GTPase-activating protein (GAP) for ADP ribosylation factor (ARF). Binds phosphatidylinositol 3-monophosohate (PI-3-P) and anionic phospholipids.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8L7A4|AGD11_ARATH Probable ADP-ribosylation factor GTPase-activating protein AGD11 OS=Arabidopsis thaliana GN=AGD11 PE=2 SV=1

 Score =  120 bits (301), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 66/156 (42%), Positives = 100/156 (64%), Gaps = 5/156 (3%)

Query: 6   GQLKVTVVQGKRLVIRDFKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEPVG 65
           G +KV VV+G  L +RD  +SDPYV+L LG Q  KT+VI + LNPVWNE   LS+ EP+ 
Sbjct: 229 GLIKVNVVKGTNLAVRDVMTSDPYVILALGQQSVKTRVIKNNLNPVWNETLMLSIPEPMP 288

Query: 66  VLSLEVFDKDRFKADDKMGKAYLNLQPIISAARLRHLVHVSSGETPLR--KIIPDSENCL 123
            L + V+DKD F  DD MG+A +++QP++SAA+       SS + P++    +   EN L
Sbjct: 289 PLKVLVYDKDTFSTDDFMGEAEIDIQPLVSAAK---AYETSSIKEPMQLGSWVASKENTL 345

Query: 124 ARESSIICINGEVVQNVWLRLCEVESGEIELKVKIV 159
             +  I+  +G+V Q++ LRL  VE G +E++++ +
Sbjct: 346 VSDGIILLEDGKVKQDISLRLQNVERGVLEIQLECL 381

GTPase-activating protein (GAP) for ADP ribosylation factor (ARF).

Arabidopsis thaliana (taxid: 3702)

>sp|Q6DN14|MCTP1_HUMAN Multiple C2 and transmembrane domain-containing protein 1 OS=Homo sapiens GN=MCTP1 PE=2 SV=2

 Score = 60.8 bits (146), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 58/109 (53%), Gaps = 2/109 (1%)

Query: 6   GQLKVTVVQGKRLVIRDFKS-SDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEPV 64
           G + +T+++G+ L   D    SDPYV  +LG+Q  K+K++   LNP W E+    L E  
Sbjct: 470 GIVSITLIEGRDLKAMDSNGLSDPYVKFRLGHQKYKSKIMPKTLNPQWREQFDFHLYEER 529

Query: 65  -GVLSLEVFDKDRFKADDKMGKAYLNLQPIISAARLRHLVHVSSGETPL 112
            GV+ +  +DKD  K DD +G+  ++L  +      +  + +  GE  L
Sbjct: 530 GGVIDITAWDKDAGKRDDFIGRCQVDLSALSREQTHKLELQLEEGEGHL 578

Homo sapiens (taxid: 9606)

>sp|Q28BX9|C2CD5_XENTR C2 domain-containing protein 5 OS=Xenopus tropicalis GN=c2cd5 PE=2 SV=1

 Score = 60.5 bits (145), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 53/99 (53%), Gaps = 14/99 (14%)

Query: 6  GQLKVTVVQGKRLVIRDFKS--SDPYVVLKLGNQMAKTKVINSCLNPVWNEE-------- 55
          G+LKV +V G+ L + D  S  +D +V +K GN   KT V +  LNP WN E        
Sbjct: 3  GKLKVKIVAGRHLPVMDRASDLTDAFVEVKFGNTTFKTDVYHKSLNPQWNSEWFKFEVDD 62

Query: 56 HSLSLTEPVGVLSLEVFDKDRFKADDKMGKAYLNLQPII 94
            L   EP   L + V D D + A+D +GK Y+++ P++
Sbjct: 63 EDLQ-DEP---LQITVLDHDTYSANDAIGKVYIDIDPLL 97

Xenopus tropicalis (taxid: 8364)

>sp|O14065|YC31_SCHPO Uncharacterized protein C962.01 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC962.01 PE=2 SV=3

 Score = 60.1 bits (144), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 37/87 (42%), Positives = 51/87 (58%), Gaps = 2/87 (2%)

Query: 6    GQLKVTVVQGKRLVIRDFKSSDPYVVLKLGNQMA-KTKVINSCLNPVWNEEHSLSLTEPV 64
            G L   +  G+ L I D +SSDP+VVLKL  + A K+KVI   LNPVWNEE  + +   V
Sbjct: 1078 GSLHFMLQDGQNLPIGDIRSSDPFVVLKLNGESAFKSKVIKKNLNPVWNEEADIVVQNRV 1137

Query: 65   -GVLSLEVFDKDRFKADDKMGKAYLNL 90
              VL L  +D D  +  D +G + ++L
Sbjct: 1138 LDVLELVCYDWDMGEKPDVLGTSNIDL 1164

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q7XA06|SYT3_ARATH Synaptotagmin-3 OS=Arabidopsis thaliana GN=SYT3 PE=2 SV=1

 Score = 60.1 bits (144), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 56/103 (54%), Gaps = 5/103 (4%)

Query: 1   MRQPFGQLKVTVVQGKRLVIRDF-KSSDPYVVLKLGNQ---MAKTKVINSCLNPVWNEEH 56
           +++P G L V++++ + L+ +D   +SDPYV L L  +     KT +    LNP WNE  
Sbjct: 256 VKKPVGLLHVSILRARNLLKKDLLGTSDPYVKLSLTGEKLPAKKTTIKKRNLNPEWNEHF 315

Query: 57  SLSLTEPVG-VLSLEVFDKDRFKADDKMGKAYLNLQPIISAAR 98
            L + +P   VL LEVFD D+    D++G   + LQ I    R
Sbjct: 316 KLIVKDPNSQVLQLEVFDWDKVGGHDRLGMQMIPLQKINPGER 358

May be involved in membrane trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZVT9|C2GR1_ARATH C2 and GRAM domain-containing protein At1g03370 OS=Arabidopsis thaliana GN=At1g03370 PE=2 SV=4

 Score = 60.1 bits (144), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 53/91 (58%), Gaps = 1/91 (1%)

Query: 7  QLKVTVVQGKRLVIRDFKS-SDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEPVG 65
          +L+V VV+ + L   D    SDPYV L+LG Q ++TKV+   LNP W E+ S  + +   
Sbjct: 2  KLQVRVVEARNLPAMDLNGFSDPYVRLQLGKQRSRTKVVKKNLNPKWTEDFSFGVDDLND 61

Query: 66 VLSLEVFDKDRFKADDKMGKAYLNLQPIISA 96
           L + V D+D++  DD +G+  +++  +  A
Sbjct: 62 ELVVSVLDEDKYFNDDFVGQVRVSVSLVFDA 92

Arabidopsis thaliana (taxid: 3702)

>sp|Q54E35|GACEE_DICDI Rho GTPase-activating protein gacEE OS=Dictyostelium discoideum GN=gacEE PE=3 SV=2

 Score = 59.3 bits (142), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/86 (36%), Positives = 50/86 (58%), Gaps = 1/86 (1%)

Query: 6   GQLKVTVVQGKRLVIRDFK-SSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEPV 64
           GQ++ TVV+ + L  +D    SDP+V++K   Q  +T+ I   LNP +NE     +T+  
Sbjct: 244 GQVQGTVVKSRNLAAKDLNGKSDPFVIIKAEQQQHRTQTIYKSLNPQFNEAFHFDITKHQ 303

Query: 65  GVLSLEVFDKDRFKADDKMGKAYLNL 90
           G +   V+D+D+FK  D MG+  + L
Sbjct: 304 GYVYFFVWDEDKFKTADFMGEVAVPL 329

Rho GTPase-activating protein involved in the signal transduction pathway.

Dictyostelium discoideum (taxid: 44689)

>sp|Q86KB1|ADCB_DICDI Arrestin domain-containing protein B OS=Dictyostelium discoideum GN=adcB PE=3 SV=1

 Score = 58.9 bits (141), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/97 (35%), Positives = 51/97 (52%), Gaps = 5/97 (5%)

Query: 8   LKVTVVQGKRLVIRD--FKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSL---TE 62
           L++ +V+GK L   D    SSDPYV LK      KT+ I + L+PVWN+   + +    +
Sbjct: 6   LRLFIVEGKELKGSDNGGSSSDPYVKLKFNGNSFKTETIKNTLSPVWNQSFDIGIINVND 65

Query: 63  PVGVLSLEVFDKDRFKADDKMGKAYLNLQPIISAARL 99
           P  ++ +E  D DRF   D +GK  L +  +  AA  
Sbjct: 66  PNAIIEVECLDWDRFGKHDSLGKVQLPIAILREAATF 102

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	164
224089561	167	predicted protein [Populus trichocarpa]	0.987	0.970	0.802	3e-70
255585404	167	ARF GTPase activator, putative [Ricinus	0.987	0.970	0.783	3e-69
224139446	164	predicted protein [Populus trichocarpa]	0.975	0.975	0.781	1e-68
225469943	165	PREDICTED: ADP-ribosylation factor GTPas	0.993	0.987	0.766	2e-68
89257495	168	C2 domain containing protein [Brassica o	0.987	0.964	0.740	4e-68
357448067	166	ADP-ribosylation factor GTPase-activatin	0.963	0.951	0.784	2e-67
124359429	173	C2 [Medicago truncatula]	0.963	0.913	0.784	3e-67
388504952	166	unknown [Lotus japonicus]	1.0	0.987	0.746	9e-67
15238792	166	calcium-dependent lipid-binding domain-c	0.993	0.981	0.730	1e-66
297794443	166	C2 domain-containing protein [Arabidopsi	0.993	0.981	0.717	1e-65

>gi|224089561|ref|XP_002308757.1| predicted protein [Populus trichocarpa] gi|222854733|gb|EEE92280.1| predicted protein [Populus trichocarpa]

 Score =  269 bits (688), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 130/162 (80%), Positives = 143/162 (88%)

Query: 1   MRQPFGQLKVTVVQGKRLVIRDFKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSL 60
           M +  G LKVTVV G+RLVIRDFK+SDPYVVLKLGNQ AKTKVINSCLNPVWNEE S SL
Sbjct: 1   MGEQLGLLKVTVVLGRRLVIRDFKTSDPYVVLKLGNQTAKTKVINSCLNPVWNEELSFSL 60

Query: 61  TEPVGVLSLEVFDKDRFKADDKMGKAYLNLQPIISAARLRHLVHVSSGETPLRKIIPDSE 120
            EPVGVLSLEVFDKDRFKADDKMG A+LNLQPI SAARL+    VSSGET LRK++PD++
Sbjct: 61  REPVGVLSLEVFDKDRFKADDKMGHAHLNLQPIASAARLKQFAKVSSGETILRKVVPDTD 120

Query: 121 NCLARESSIICINGEVVQNVWLRLCEVESGEIELKVKIVDAP 162
           NCLARESSI CINGEVVQ+VWLRLC VESGEIELK+K++D P
Sbjct: 121 NCLARESSISCINGEVVQSVWLRLCAVESGEIELKIKLIDPP 162

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255585404|ref|XP_002533397.1| ARF GTPase activator, putative [Ricinus communis] gi|223526756|gb|EEF28983.1| ARF GTPase activator, putative [Ricinus communis]

 Score =  266 bits (679), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 127/162 (78%), Positives = 146/162 (90%)

Query: 1   MRQPFGQLKVTVVQGKRLVIRDFKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSL 60
           M +  G LKVTVV+GKRLVIRDFKSSDPYVV+KLGNQ  KTKVINSCLNPVWNEE S SL
Sbjct: 1   MGEQLGLLKVTVVRGKRLVIRDFKSSDPYVVVKLGNQTLKTKVINSCLNPVWNEELSFSL 60

Query: 61  TEPVGVLSLEVFDKDRFKADDKMGKAYLNLQPIISAARLRHLVHVSSGETPLRKIIPDSE 120
           TEP+GVLSLEVFDKDRFKADDKMG A+++LQPI SAARL+ ++ VSSGET LRK++PD++
Sbjct: 61  TEPIGVLSLEVFDKDRFKADDKMGHAHISLQPIASAARLKQILQVSSGETILRKVVPDTD 120

Query: 121 NCLARESSIICINGEVVQNVWLRLCEVESGEIELKVKIVDAP 162
           NCLARESSI CI+GEVVQ+VWLRLC VESGEIELK+K+V+ P
Sbjct: 121 NCLARESSISCIDGEVVQSVWLRLCAVESGEIELKIKLVNPP 162

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224139446|ref|XP_002323116.1| predicted protein [Populus trichocarpa] gi|222867746|gb|EEF04877.1| predicted protein [Populus trichocarpa]

 Score =  263 bits (673), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 125/160 (78%), Positives = 142/160 (88%)

Query: 1   MRQPFGQLKVTVVQGKRLVIRDFKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSL 60
           MR+  G LKVTVVQGK+LVIRDF++SDPYVV+KLGNQ AKTK INSCLNPVWNEE S SL
Sbjct: 1   MREQLGLLKVTVVQGKKLVIRDFRTSDPYVVVKLGNQTAKTKFINSCLNPVWNEELSFSL 60

Query: 61  TEPVGVLSLEVFDKDRFKADDKMGKAYLNLQPIISAARLRHLVHVSSGETPLRKIIPDSE 120
            EPVGVLSLEVFDKDRFK+DDKMG A+LNLQPI S+ARL+    VSS ET LRKI+PD++
Sbjct: 61  KEPVGVLSLEVFDKDRFKSDDKMGHAHLNLQPIASSARLKQFAKVSSAETILRKIVPDTD 120

Query: 121 NCLARESSIICINGEVVQNVWLRLCEVESGEIELKVKIVD 160
           NCLARESSI CINGEVVQ+VWLRLC V+SGEIELK+K++D
Sbjct: 121 NCLARESSISCINGEVVQSVWLRLCAVKSGEIELKIKLID 160

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225469943|ref|XP_002275013.1| PREDICTED: ADP-ribosylation factor GTPase-activating protein AGD12 [Vitis vinifera] gi|297741867|emb|CBI33247.3| unnamed protein product [Vitis vinifera]

 Score =  263 bits (671), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 125/163 (76%), Positives = 144/163 (88%)

Query: 1   MRQPFGQLKVTVVQGKRLVIRDFKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSL 60
           M +P G LKV VVQGKRLVIRDFKSSDPYV++KLGNQ AKTKVINSCLNPVWNEE S SL
Sbjct: 1   MGEPVGMLKVIVVQGKRLVIRDFKSSDPYVIVKLGNQTAKTKVINSCLNPVWNEELSFSL 60

Query: 61  TEPVGVLSLEVFDKDRFKADDKMGKAYLNLQPIISAARLRHLVHVSSGETPLRKIIPDSE 120
            +PVGVL LEVFDKDRFKADDKMG A+L+LQPI+SAARLR ++ VSSGET LRK+IPD +
Sbjct: 61  MDPVGVLYLEVFDKDRFKADDKMGHAHLSLQPIVSAARLRQILGVSSGETTLRKVIPDPD 120

Query: 121 NCLARESSIICINGEVVQNVWLRLCEVESGEIELKVKIVDAPS 163
           NCL RES + CINGEVVQ+VWLRLC VESGEI+L++K++D P+
Sbjct: 121 NCLVRESCVSCINGEVVQDVWLRLCGVESGEIQLQIKLMDPPA 163

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|89257495|gb|ABD64985.1| C2 domain containing protein [Brassica oleracea]

 Score =  262 bits (669), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 120/162 (74%), Positives = 146/162 (90%)

Query: 1   MRQPFGQLKVTVVQGKRLVIRDFKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSL 60
           M +P GQL+VTV++GK+L IRDFKSSDPYV++KLGN+ AKTKVIN+CLNPVW+EE S +L
Sbjct: 1   MVEPLGQLQVTVIRGKKLAIRDFKSSDPYVIVKLGNESAKTKVINNCLNPVWDEELSFTL 60

Query: 61  TEPVGVLSLEVFDKDRFKADDKMGKAYLNLQPIISAARLRHLVHVSSGETPLRKIIPDSE 120
            +P  VLSLEVFDKDRFKADDKMG A L+LQP+IS ARLRH+VHVSSGET LRK++PDS+
Sbjct: 61  KDPAAVLSLEVFDKDRFKADDKMGHATLSLQPLISVARLRHIVHVSSGETTLRKVLPDSD 120

Query: 121 NCLARESSIICINGEVVQNVWLRLCEVESGEIELKVKIVDAP 162
           NCL+RES+I CI+GEVVQ+VWL+LC VESGEIELK+K++D P
Sbjct: 121 NCLSRESTISCIDGEVVQSVWLKLCAVESGEIELKIKLIDPP 162

Source: Brassica oleracea

Species: Brassica oleracea

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357448067|ref|XP_003594309.1| ADP-ribosylation factor GTPase-activating protein AGD12 [Medicago truncatula] gi|217073670|gb|ACJ85195.1| unknown [Medicago truncatula] gi|355483357|gb|AES64560.1| ADP-ribosylation factor GTPase-activating protein AGD12 [Medicago truncatula]

 Score =  259 bits (663), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 124/158 (78%), Positives = 140/158 (88%)

Query: 1   MRQPFGQLKVTVVQGKRLVIRDFKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSL 60
           M +  GQLKV VVQGKRLVIRDFK+SDPYVVLKLGNQ AKTKVINSCLNPVWNEE + +L
Sbjct: 1   MSEQLGQLKVIVVQGKRLVIRDFKTSDPYVVLKLGNQTAKTKVINSCLNPVWNEELNFTL 60

Query: 61  TEPVGVLSLEVFDKDRFKADDKMGKAYLNLQPIISAARLRHLVHVSSGETPLRKIIPDSE 120
           TEP+GVL+LEVFDKD  KADDKMG A++NLQP++SAARLR ++ VSSGE  LRK+IPDSE
Sbjct: 61  TEPLGVLNLEVFDKDLLKADDKMGNAFINLQPLVSAARLRDILRVSSGEQTLRKVIPDSE 120

Query: 121 NCLARESSIICINGEVVQNVWLRLCEVESGEIELKVKI 158
           NCL RESSI C+NGEVVQNVWLRL EVESGEIEL +K+
Sbjct: 121 NCLVRESSINCVNGEVVQNVWLRLREVESGEIELTLKL 158

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|124359429|gb|ABD28590.2| C2 [Medicago truncatula]

 Score =  259 bits (662), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 124/158 (78%), Positives = 140/158 (88%)

Query: 1   MRQPFGQLKVTVVQGKRLVIRDFKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSL 60
           M +  GQLKV VVQGKRLVIRDFK+SDPYVVLKLGNQ AKTKVINSCLNPVWNEE + +L
Sbjct: 8   MSEQLGQLKVIVVQGKRLVIRDFKTSDPYVVLKLGNQTAKTKVINSCLNPVWNEELNFTL 67

Query: 61  TEPVGVLSLEVFDKDRFKADDKMGKAYLNLQPIISAARLRHLVHVSSGETPLRKIIPDSE 120
           TEP+GVL+LEVFDKD  KADDKMG A++NLQP++SAARLR ++ VSSGE  LRK+IPDSE
Sbjct: 68  TEPLGVLNLEVFDKDLLKADDKMGNAFINLQPLVSAARLRDILRVSSGEQTLRKVIPDSE 127

Query: 121 NCLARESSIICINGEVVQNVWLRLCEVESGEIELKVKI 158
           NCL RESSI C+NGEVVQNVWLRL EVESGEIEL +K+
Sbjct: 128 NCLVRESSINCVNGEVVQNVWLRLREVESGEIELTLKL 165

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388504952|gb|AFK40542.1| unknown [Lotus japonicus]

 Score =  257 bits (657), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 124/166 (74%), Positives = 144/166 (86%), Gaps = 2/166 (1%)

Query: 1   MRQPFGQLKVTVVQGKRLVIRDFKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSL 60
           M +  G LKV V QGKRLVIRDFKSSDPYVVLKLGNQ AKTKVINSCLNPVWNEE + +L
Sbjct: 1   MSEQLGVLKVRVAQGKRLVIRDFKSSDPYVVLKLGNQTAKTKVINSCLNPVWNEELNFTL 60

Query: 61  TEPVGVLSLEVFDKDRFKADDKMGKAYLNLQPIISAARLRHLVHVSSGETPLRKIIPDSE 120
           TEP+GVL+LEVFDKD  KADDKMG A++NLQP++SAARLR ++ VSSGET LRK++PDSE
Sbjct: 61  TEPLGVLNLEVFDKDLLKADDKMGNAFVNLQPLVSAARLRDILRVSSGETTLRKVVPDSE 120

Query: 121 NCLARESSIICINGEVVQNVWLRLCEVESGEIELKVKIVD--APSR 164
           NCL RESSI C+NGEVVQNVWLRL +VESGE+EL +K++   APS+
Sbjct: 121 NCLVRESSINCVNGEVVQNVWLRLRDVESGEVELTIKLITPVAPSK 166

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15238792|ref|NP_199582.1| calcium-dependent lipid-binding domain-containing protein [Arabidopsis thaliana] gi|145334767|ref|NP_001078729.1| calcium-dependent lipid-binding domain-containing protein [Arabidopsis thaliana] gi|10177907|dbj|BAB11318.1| unnamed protein product [Arabidopsis thaliana] gi|21592759|gb|AAM64708.1| unknown [Arabidopsis thaliana] gi|28466847|gb|AAO44032.1| At5g47710 [Arabidopsis thaliana] gi|110735825|dbj|BAE99889.1| hypothetical protein [Arabidopsis thaliana] gi|332008173|gb|AED95556.1| calcium-dependent lipid-binding domain-containing protein [Arabidopsis thaliana] gi|332008174|gb|AED95557.1| calcium-dependent lipid-binding domain-containing protein [Arabidopsis thaliana]

 Score =  257 bits (656), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 119/163 (73%), Positives = 144/163 (88%)

Query: 1   MRQPFGQLKVTVVQGKRLVIRDFKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSL 60
           M +P G L+VTV+QGK+LVIRDFKSSDPYV++KLGN+ AKTKVIN+CLNPVWNEE + +L
Sbjct: 1   MGEPLGLLQVTVIQGKKLVIRDFKSSDPYVIVKLGNESAKTKVINNCLNPVWNEELNFTL 60

Query: 61  TEPVGVLSLEVFDKDRFKADDKMGKAYLNLQPIISAARLRHLVHVSSGETPLRKIIPDSE 120
            +P  VL+LEVFDKDRFKADDKMG A L+LQP+IS ARLRH+V VSSGET LRK++PD E
Sbjct: 61  KDPAAVLALEVFDKDRFKADDKMGHASLSLQPLISVARLRHVVRVSSGETTLRKVLPDPE 120

Query: 121 NCLARESSIICINGEVVQNVWLRLCEVESGEIELKVKIVDAPS 163
           NC++RES+I CI+GEVVQ+VWLRLC VESGEIELK+K++D P 
Sbjct: 121 NCVSRESTISCIDGEVVQSVWLRLCAVESGEIELKIKLIDPPG 163

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297794443|ref|XP_002865106.1| C2 domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297310941|gb|EFH41365.1| C2 domain-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  253 bits (647), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 117/163 (71%), Positives = 143/163 (87%)

Query: 1   MRQPFGQLKVTVVQGKRLVIRDFKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSL 60
           M +P G L+VTV+QGK+LVIRDFKSSDPYV++KLGN+ AKTKVIN+CLNPVW+EE S +L
Sbjct: 1   MGEPLGLLQVTVIQGKKLVIRDFKSSDPYVIVKLGNESAKTKVINNCLNPVWDEELSFTL 60

Query: 61  TEPVGVLSLEVFDKDRFKADDKMGKAYLNLQPIISAARLRHLVHVSSGETPLRKIIPDSE 120
            +P  VL+LEVFDKDRFKADDKMG A L+LQP+IS ARLRH+V +SSGET LRK++P  E
Sbjct: 61  KDPAAVLALEVFDKDRFKADDKMGHASLSLQPLISVARLRHVVRISSGETTLRKVLPGPE 120

Query: 121 NCLARESSIICINGEVVQNVWLRLCEVESGEIELKVKIVDAPS 163
           NC++RES+I CI+GEVVQ+VWLRLC VESGEIELK+K++D P 
Sbjct: 121 NCVSRESTISCIDGEVVQSVWLRLCAVESGEIELKIKLIDPPG 163

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	164
TAIR|locus:2160867	166	AT5G47710 "AT5G47710" [Arabido	0.987	0.975	0.734	4.2e-63
TAIR|locus:2013905	185	AT1G70790 "AT1G70790" [Arabido	0.975	0.864	0.45	3.3e-31
TAIR|locus:2201497	174	AT1G66360 "AT1G66360" [Arabido	0.975	0.919	0.406	1.4e-30
TAIR|locus:2035042	168	AT1G73580 "AT1G73580" [Arabido	0.945	0.922	0.471	3e-30
TAIR|locus:2014020	165	AT1G70810 "AT1G70810" [Arabido	0.969	0.963	0.417	6.2e-30
TAIR|locus:2088505	177	C2 "AT3G17980" [Arabidopsis th	0.945	0.875	0.433	6.2e-30
TAIR|locus:2049602	180	AT2G01540 "AT2G01540" [Arabido	0.945	0.861	0.414	7.9e-30
TAIR|locus:2115904	336	AGD13 "ARF-GAP domain 13" [Ara	0.920	0.449	0.453	3.1e-28
TAIR|locus:2127338	337	ZAC [Arabidopsis thaliana (tax	0.920	0.448	0.447	8.2e-28
TAIR|locus:2077367	385	AT3G07940 [Arabidopsis thalian	0.908	0.387	0.428	1e-27

TAIR|locus:2160867 AT5G47710 "AT5G47710" [Arabidopsis thaliana (taxid:3702)]

 Score = 644 (231.8 bits), Expect = 4.2e-63, P = 4.2e-63
 Identities = 119/162 (73%), Positives = 144/162 (88%)

Query:     1 MRQPFGQLKVTVVQGKRLVIRDFKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSL 60
             M +P G L+VTV+QGK+LVIRDFKSSDPYV++KLGN+ AKTKVIN+CLNPVWNEE + +L
Sbjct:     1 MGEPLGLLQVTVIQGKKLVIRDFKSSDPYVIVKLGNESAKTKVINNCLNPVWNEELNFTL 60

Query:    61 TEPVGVLSLEVFDKDRFKADDKMGKAYLNLQPIISAARLRHLVHVSSGETPLRKIIPDSE 120
              +P  VL+LEVFDKDRFKADDKMG A L+LQP+IS ARLRH+V VSSGET LRK++PD E
Sbjct:    61 KDPAAVLALEVFDKDRFKADDKMGHASLSLQPLISVARLRHVVRVSSGETTLRKVLPDPE 120

Query:   121 NCLARESSIICINGEVVQNVWLRLCEVESGEIELKVKIVDAP 162
             NC++RES+I CI+GEVVQ+VWLRLC VESGEIELK+K++D P
Sbjct:   121 NCVSRESTISCIDGEVVQSVWLRLCAVESGEIELKIKLIDPP 162

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005773 "vacuole" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2013905 AT1G70790 "AT1G70790" [Arabidopsis thaliana (taxid:3702)]

 Score = 343 (125.8 bits), Expect = 3.3e-31, P = 3.3e-31
 Identities = 72/160 (45%), Positives = 100/160 (62%)

Query:     3 QPFGQLKVTVVQGKRLVIRDFKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTE 62
             +P G L+V V +G  L IRD  +SDPYVV+ L NQ  KT+VIN+  NPVWNE+ +LS+ +
Sbjct:     4 KPLGILRVHVKRGINLAIRDATTSDPYVVITLANQKLKTRVINNNCNPVWNEQLTLSIKD 63

Query:    63 PVGVLSLEVFDKDRFKADDKMGKAYLNLQPIISAARLRHLVHVSSGETPLRKIIPDSENC 122
                 + L VFDKDRF  DDKMG A ++ +P + A ++            +++I P   NC
Sbjct:    64 VNDPIRLTVFDKDRFSGDDKMGDAEIDFRPFLEAHQMELDFQKLPNGCAIKRIRPGRTNC 123

Query:   123 LARESSIICINGEVVQNVWLRLCEVESGEIELKVKIVDAP 162
             LA ESSI   NG+++Q + LRL  VE GE+EL ++  D P
Sbjct:   124 LAEESSITWSNGKIMQEMILRLKNVECGEVELMLEWTDGP 163

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2201497 AT1G66360 "AT1G66360" [Arabidopsis thaliana (taxid:3702)]

 Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
 Identities = 65/160 (40%), Positives = 105/160 (65%)

Query:     1 MRQPFGQLKVTVVQGKRLVIRDFKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSL 60
             M    G L++ V++G  L IRD +SSDPYV++++G Q  +T+V+   LN  WNE+ +LS+
Sbjct:     1 MENMLGLLRLHVIRGVNLAIRDSQSSDPYVIVRMGKQKLRTRVMKKNLNTEWNEDLTLSV 60

Query:    61 TEPVGVLSLEVFDKDRFKADDKMGKAYLNLQPIISAARLRHLVHVSSGETPLRKIIPDSE 120
             T+P   + + V+D+DRF  DDKMG A  ++ P + A R+++ +      T + KI    +
Sbjct:    61 TDPTLPVKIMVYDRDRFSRDDKMGDAIFHIDPFLEAIRIQNQLGGLPEGTVIMKIQASRQ 120

Query:   121 NCLARESSIICINGEVVQNVWLRLCEVESGEIELKVKIVD 160
             NCL+ ES I+   G++VQN++L+L  VE GEIEL+++ +D
Sbjct:   121 NCLSEESKIVWHKGKIVQNMFLKLQNVERGEIELQLEWID 160

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2035042 AT1G73580 "AT1G73580" [Arabidopsis thaliana (taxid:3702)]

 Score = 334 (122.6 bits), Expect = 3.0e-30, P = 3.0e-30
 Identities = 74/157 (47%), Positives = 100/157 (63%)

Query:     6 GQLKVTVVQGKRLVIRDFKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEPVG 65
             G L+V V +G  L +RD  SSDPYVVLKLG Q  KTKV+   +NP W E+ S ++T+P  
Sbjct:     9 GILRVRVQRGVNLAVRDVSSSDPYVVLKLGRQKLKTKVVKQNVNPQWQEDLSFTVTDPNL 68

Query:    66 VLSLEVFDKDRFKADDKMGKAYLNLQPIISAARLRHLVHVSSGETPLRKIIPDSENCLAR 125
              L+L V+D D F  DDKMG A ++L+P I A R+  L  +  G T +  I P   NCLA 
Sbjct:    69 PLTLIVYDHDFFSKDDKMGDAEIDLKPYIEALRME-LSGLPDG-TIISTIGPSRGNCLAE 126

Query:   126 ESSIICINGEVVQNVWLRLCEVESGEIELKVKIVDAP 162
             ES I  IN  +VQ++ LRL  VE GE+E++++ +D P
Sbjct:   127 ESYIRWINDRIVQHICLRLRNVERGEVEIELQWIDLP 163

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2014020 AT1G70810 "AT1G70810" [Arabidopsis thaliana (taxid:3702)]

 Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
 Identities = 68/163 (41%), Positives = 109/163 (66%)

Query:     1 MRQPFGQLKVTVVQGKRLVIRDFKSSDPYVVLKLGNQMAKTKVI-NSCLNPVWNEEHSLS 59
             M +  G L++ V +G  L  RD  SSDP+VV+ +G+Q  KT+V+ N+C NP WNEE +L+
Sbjct:     1 MEELVGLLRIRVKRGINLAQRDTLSSDPFVVITMGSQKLKTRVVENNC-NPEWNEELTLA 59

Query:    60 LTEPVGVLSLEVFDKDRFKADDKMGKAYLNLQPIISAARLRHLVHVSSGETPLRKIIPDS 119
             L  P   ++L V+DKD F + DKMG A ++++P +   ++  L  +  G T +++++P+ 
Sbjct:    60 LRHPDEPVNLIVYDKDTFTSHDKMGDAKIDIKPFLEVHKMG-LQELPDG-TEIKRVVPNR 117

Query:   120 ENCLARESSIICINGEVVQNVWLRLCEVESGEIELKVKIVDAP 162
             ENCLA  SSI+  NG++VQN+ L L  VE GE+E++++ +D P
Sbjct:   118 ENCLAEASSIVSNNGKIVQNMILLLRNVECGEVEIQLEWIDIP 160

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2088505 C2 "AT3G17980" [Arabidopsis thaliana (taxid:3702)]

 Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
 Identities = 68/157 (43%), Positives = 102/157 (64%)

Query:     6 GQLKVTVVQGKRLVIRDFKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEPVG 65
             G L++ + +G  L +RD  SSDPYVV+K+G Q  KT+VIN  +NP WNE+ +LS+T+   
Sbjct:    18 GLLRIRIKRGVNLAVRDISSSDPYVVVKMGKQKLKTRVINKDVNPEWNEDLTLSVTDSNL 77

Query:    66 VLSLEVFDKDRFKADDKMGKAYLNLQPIISAARLRHLVHVSSGETPLRKIIPDSENCLAR 125
              + L V+D D F  DDKMG A   ++P I A R++ L  + SG T +  + P   NCLA 
Sbjct:    78 TVLLTVYDHDMFSKDDKMGDAEFEIKPYIEALRMQ-LDGLPSG-TIVTTVKPSRRNCLAE 135

Query:   126 ESSIICINGEVVQNVWLRLCEVESGEIELKVKIVDAP 162
             ES +  ++G++VQ++ LRL  VE GE+E +++ +D P
Sbjct:   136 ESRVTWVDGKLVQDLVLRLRHVECGEVEAQLQWIDLP 172

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2049602 AT2G01540 "AT2G01540" [Arabidopsis thaliana (taxid:3702)]

 Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
 Identities = 65/157 (41%), Positives = 104/157 (66%)

Query:     2 RQPFGQLKVTVVQGKRLVIRDFKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLT 61
             ++P G L + V +G  L IRD +SSDPY+VL + +Q  KT+V+    NPVWNEE ++++ 
Sbjct:     3 QKPLGLLTIHVKRGINLAIRDHRSSDPYIVLNVADQTLKTRVVKKNCNPVWNEEMTVAIK 62

Query:    62 EPVGVLSLEVFDKDRFKADDKMGKAYLNLQPIISAARL-RHLVHVSSGETPLRKIIPDSE 120
             +P   + L VFD D+F  DDKMG A +++QP + A ++   L+ + +G   ++++ P   
Sbjct:    63 DPNVPIRLTVFDWDKFTGDDKMGDANIDIQPYLEALKMGMELLRLPNG-CAIKRVQPSRH 121

Query:   121 NCLARESSIICINGEVVQNVWLRLCEVESGEIELKVK 157
             NCL+ ESSI+  NG++ Q++ LRL  VE GEIE+ ++
Sbjct:   122 NCLSDESSIVWNNGKITQDLILRLNNVECGEIEIMLE 158

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005773 "vacuole" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2115904 AGD13 "ARF-GAP domain 13" [Arabidopsis thaliana (taxid:3702)]

 Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
 Identities = 69/152 (45%), Positives = 100/152 (65%)

Query:     6 GQLKVTVVQGKRLVIRDFKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEPVG 65
             G LKVT+ +G  L IRD  SSDPYVVL LG Q  +T V+NS LNPVWN+E  LS+ E  G
Sbjct:   180 GLLKVTIKKGTNLAIRDMMSSDPYVVLNLGKQKLQTTVMNSNLNPVWNQELMLSVPESYG 239

Query:    66 VLSLEVFDKDRFKADDKMGKAYLNLQPIISAARLRHLVHVSSGETPLRKIIPDSENCLAR 125
              + L+V+D D F ADD MG+A +++QP+I++A       +  G+  + K +   +N L  
Sbjct:   240 PVKLQVYDYDTFSADDIMGEADIDIQPLITSAMAFGDPEMF-GDMQIGKWLKSHDNPLID 298

Query:   126 ESSIICINGEVVQNVWLRLCEVESGEIELKVK 157
             +S I  ++G+V Q V ++L  VESGE+EL+++
Sbjct:   299 DSIINIVDGKVKQEVQIKLQNVESGELELEME 330

GO:0005634 "nucleus" evidence=ISM

GO:0008060 "ARF GTPase activator activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0032312 "regulation of ARF GTPase activity" evidence=IEA

GO:0009555 "pollen development" evidence=IMP

TAIR|locus:2127338 ZAC [Arabidopsis thaliana (taxid:3702)]

 Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
 Identities = 68/152 (44%), Positives = 98/152 (64%)

Query:     6 GQLKVTVVQGKRLVIRDFKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEPVG 65
             G LKVT+ +G  + IRD  SSDPYVVL LG Q A++ V+ S LNPVWNEE  LS+    G
Sbjct:   181 GLLKVTIKKGTNMAIRDMMSSDPYVVLTLGQQKAQSTVVKSNLNPVWNEELMLSVPHNYG 240

Query:    66 VLSLEVFDKDRFKADDKMGKAYLNLQPIISAARLRHLVHVSSGETPLRKIIPDSENCLAR 125
              + L+VFD D F ADD MG+A +++QP+I++A       +  G+  + K +   +N L  
Sbjct:   241 SVKLQVFDYDTFSADDIMGEAEIDIQPLITSAMAFGDPEMF-GDMQIGKWLKSHDNALIE 299

Query:   126 ESSIICINGEVVQNVWLRLCEVESGEIELKVK 157
             +S I   +G+V Q V ++L  VESGE+EL+++
Sbjct:   300 DSIINIADGKVKQEVQIKLQNVESGELELEME 331

GO:0005634 "nucleus" evidence=ISM

GO:0008060 "ARF GTPase activator activity" evidence=IEA;IDA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0032312 "regulation of ARF GTPase activity" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0006886 "intracellular protein transport" evidence=TAS

GO:0016020 "membrane" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0000902 "cell morphogenesis" evidence=RCA

GO:0006605 "protein targeting" evidence=RCA

GO:0006623 "protein targeting to vacuole" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0016049 "cell growth" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

GO:0016197 "endosomal transport" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

TAIR|locus:2077367 AT3G07940 [Arabidopsis thaliana (taxid:3702)]

 Score = 310 (114.2 bits), Expect = 1.0e-27, P = 1.0e-27
 Identities = 66/154 (42%), Positives = 99/154 (64%)

Query:     6 GQLKVTVVQGKRLVIRDFKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEPVG 65
             G +KV VV+G  L +RD  +SDPYV+L LG Q  KT+VI + LNPVWNE   LS+ EP+ 
Sbjct:   229 GLIKVNVVKGTNLAVRDVMTSDPYVILALGQQSVKTRVIKNNLNPVWNETLMLSIPEPMP 288

Query:    66 VLSLEVFDKDRFKADDKMGKAYLNLQPIISAARLRHLVHVSSGETPLR--KIIPDSENCL 123
              L + V+DKD F  DD MG+A +++QP++SAA+       SS + P++    +   EN L
Sbjct:   289 PLKVLVYDKDTFSTDDFMGEAEIDIQPLVSAAKA---YETSSIKEPMQLGSWVASKENTL 345

Query:   124 ARESSIICINGEVVQNVWLRLCEVESGEIELKVK 157
               +  I+  +G+V Q++ LRL  VE G +E++++
Sbjct:   346 VSDGIILLEDGKVKQDISLRLQNVERGVLEIQLE 379

GO:0005634 "nucleus" evidence=ISM

GO:0008060 "ARF GTPase activator activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0032312 "regulation of ARF GTPase activity" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00060056 hypothetical protein (167 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	164
cd04038	145	cd04038, C2_ArfGAP, C2 domain present in Arf GTPas	9e-73
cd00030	102	cd00030, C2, C2 domain	2e-24
pfam00168	85	pfam00168, C2, C2 domain	2e-22
smart00239	101	smart00239, C2, Protein kinase C conserved region	3e-22
cd04042	121	cd04042, C2A_MCTP_PRT, C2 domain first repeat foun	4e-20
cd04024	128	cd04024, C2A_Synaptotagmin-like, C2 domain first r	2e-18
cd04040	115	cd04040, C2D_Tricalbin-like, C2 domain fourth repe	4e-17
cd04041	111	cd04041, C2A_fungal, C2 domain first repeat; funga	4e-17
cd08376	116	cd08376, C2B_MCTP_PRT, C2 domain second repeat fou	5e-15
cd08391	121	cd08391, C2A_C2C_Synaptotagmin_like, C2 domain fir	6e-15
cd04026	131	cd04026, C2_PKC_alpha_gamma, C2 domain in Protein	2e-13
cd04044	124	cd04044, C2A_Tricalbin-like, C2 domain first repea	6e-13
cd04049	124	cd04049, C2_putative_Elicitor-responsive_gene, C2	6e-13
cd08688	110	cd08688, C2_KIAA0528-like, C2 domain found in the	1e-12
cd04054	121	cd04054, C2A_Rasal1_RasA4, C2 domain first repeat	4e-12
cd04036	119	cd04036, C2_cPLA2, C2 domain present in cytosolic	8e-12
cd04033	133	cd04033, C2_NEDD4_NEDD4L, C2 domain present in the	4e-11
cd04021	125	cd04021, C2_E3_ubiquitin_ligase, C2 domain present	7e-11
cd04043	126	cd04043, C2_Munc13_fungal, C2 domain in Munc13 (ma	1e-10
COG5038	1227	COG5038, COG5038, Ca2+-dependent lipid-binding pro	2e-10
cd08377	119	cd08377, C2C_MCTP_PRT, C2 domain third repeat foun	3e-10
cd08386	125	cd08386, C2A_Synaptotagmin-7, C2A domain first rep	4e-10
cd08383	117	cd08383, C2A_RasGAP, C2 domain (first repeat) of R	5e-10
cd08384	133	cd08384, C2B_Rabphilin_Doc2, C2 domain second repe	8e-10
cd08382	123	cd08382, C2_Smurf-like, C2 domain present in Smad	1e-09
cd08375	136	cd08375, C2_Intersectin, C2 domain present in Inte	1e-09
cd04009	133	cd04009, C2B_Munc13-like, C2 domain second repeat	2e-09
cd00276	134	cd00276, C2B_Synaptotagmin, C2 domain second repea	2e-09
cd04045	120	cd04045, C2C_Tricalbin-like, C2 domain third repea	4e-09
cd04039	108	cd04039, C2_PSD, C2 domain present in Phosphatidyl	6e-09
cd08385	124	cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain	8e-09
cd04018	151	cd04018, C2C_Ferlin, C2 domain third repeat in Fer	2e-08
cd04031	125	cd04031, C2A_RIM1alpha, C2 domain first repeat con	3e-08
cd04037	124	cd04037, C2E_Ferlin, C2 domain fifth repeat in Fer	3e-08
cd08379	126	cd08379, C2D_MCTP_PRT_plant, C2 domain fourth repe	7e-08
COG5038	1227	COG5038, COG5038, Ca2+-dependent lipid-binding pro	8e-08
cd04017	135	cd04017, C2D_Ferlin, C2 domain fourth repeat in Fe	8e-08
cd04019	150	cd04019, C2C_MCTP_PRT_plant, C2 domain third repea	9e-08
cd08405	136	cd08405, C2B_Synaptotagmin-7, C2 domain second rep	1e-07
cd04032	127	cd04032, C2_Perforin, C2 domain of Perforin	1e-07
cd04035	123	cd04035, C2A_Rabphilin_Doc2, C2 domain first repea	2e-07
cd04016	121	cd04016, C2_Tollip, C2 domain present in Toll-inte	2e-07
cd04025	123	cd04025, C2B_RasA1_RasA4, C2 domain second repeat	2e-07
cd04022	127	cd04022, C2A_MCTP_PRT_plant, C2 domain first repea	4e-07
cd04027	127	cd04027, C2B_Munc13, C2 domain second repeat in Mu	8e-07
PLN03008	868	PLN03008, PLN03008, Phospholipase D delta	1e-06
cd04046	126	cd04046, C2_Calpain, C2 domain present in Calpain	1e-06
cd08681	118	cd08681, C2_fungal_Inn1p-like, C2 domain found in	3e-06
cd08378	121	cd08378, C2B_MCTP_PRT_plant, C2 domain second repe	3e-06
cd04050	105	cd04050, C2B_Synaptotagmin-like, C2 domain second	3e-06
cd08521	123	cd08521, C2A_SLP, C2 domain first repeat present i	4e-06
cd08387	124	cd08387, C2A_Synaptotagmin-8, C2A domain first rep	8e-06
cd00275	128	cd00275, C2_PLC_like, C2 domain present in Phospho	8e-06
cd04020	162	cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat	1e-05
cd08373	127	cd08373, C2A_Ferlin, C2 domain first repeat in Fer	2e-05
cd08682	126	cd08682, C2_Rab11-FIP_classI, C2 domain found in R	2e-05
cd04015	158	cd04015, C2_plant_PLD, C2 domain present in plant	2e-05
cd04030	127	cd04030, C2C_KIAA1228, C2 domain third repeat pres	4e-05
cd08402	136	cd08402, C2B_Synaptotagmin-1, C2 domain second rep	9e-05
cd08401	121	cd08401, C2A_RasA2_RasA3, C2 domain first repeat p	1e-04
COG5038	1227	COG5038, COG5038, Ca2+-dependent lipid-binding pro	2e-04
cd04011	111	cd04011, C2B_Ferlin, C2 domain second repeat in Fe	2e-04
cd04047	110	cd04047, C2B_Copine, C2 domain second repeat in Co	2e-04
cd08388	128	cd08388, C2A_Synaptotagmin-4-11, C2A domain first	3e-04
cd08390	123	cd08390, C2A_Synaptotagmin-15-17, C2A domain first	4e-04
cd04048	120	cd04048, C2A_Copine, C2 domain first repeat in Cop	7e-04
cd08381	122	cd08381, C2B_PI3K_class_II, C2 domain second repea	9e-04
cd08404	136	cd08404, C2B_Synaptotagmin-4, C2 domain second rep	0.001
cd08676	153	cd08676, C2A_Munc13-like, C2 domain first repeat i	0.001
PLN02952	599	PLN02952, PLN02952, phosphoinositide phospholipase	0.001
PLN02223	537	PLN02223, PLN02223, phosphoinositide phospholipase	0.002
cd08410	135	cd08410, C2B_Synaptotagmin-17, C2 domain second re	0.004

>gnl|CDD|176003 cd04038, C2_ArfGAP, C2 domain present in Arf GTPase Activating Proteins (GAP)

 Score =  214 bits (548), Expect = 9e-73
 Identities = 79/145 (54%), Positives = 102/145 (70%), Gaps = 1/145 (0%)

Query: 6   GQLKVTVVQGKRLVIRDFKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEPVG 65
           G LKV VV+G  L +RDF SSDPYVVL LGNQ  KT+VI   LNPVWNEE +LS+  P+ 
Sbjct: 2   GLLKVRVVRGTNLAVRDFTSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNPMA 61

Query: 66  VLSLEVFDKDRFKADDKMGKAYLNLQPIISAARLRHLVHVSSGETPLRKIIPDSENCLAR 125
            L LEVFDKD F  DD MG+A ++L+P++ AA+L HL     G   ++K++P  ENCLA 
Sbjct: 62  PLKLEVFDKDTFSKDDSMGEAEIDLEPLVEAAKLDHLRDTPGGTQ-IKKVLPSVENCLAS 120

Query: 126 ESSIICINGEVVQNVWLRLCEVESG 150
           ES I   +G++VQ++ L+L  VESG
Sbjct: 121 ESHITWKDGKIVQDLVLKLRNVESG 145

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 145

>gnl|CDD|175973 cd00030, C2, C2 domain

 Score = 90.6 bits (225), Expect = 2e-24
 Identities = 38/91 (41%), Positives = 56/91 (61%), Gaps = 3/91 (3%)

Query: 8  LKVTVVQGKRLVIRDF-KSSDPYVVLKLGN-QMAKTKVINSCLNPVWNEEHSLSLTEPVG 65
          L+VTV++ + L  +D    SDPYV + LG  Q  KTKV+ + LNPVWNE     + +P  
Sbjct: 1  LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPES 60

Query: 66 -VLSLEVFDKDRFKADDKMGKAYLNLQPIIS 95
            L++EV+DKDRF  DD +G+  + L  ++ 
Sbjct: 61 DTLTVEVWDKDRFSKDDFLGEVEIPLSELLD 91

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102

>gnl|CDD|215765 pfam00168, C2, C2 domain

 Score = 85.4 bits (212), Expect = 2e-22
 Identities = 38/85 (44%), Positives = 51/85 (60%), Gaps = 5/85 (5%)

Query: 8  LKVTVVQGKRLVIRDFKS-SDPYVVLKLGNQ---MAKTKVINSCLNPVWNEEHSLSLTEP 63
          L+VTV+  K L  +D    SDPYV + LG Q     KTKV+ + LNPVWNE  +  +T P
Sbjct: 1  LRVTVISAKNLPPKDLNGKSDPYVKVSLGGQKKDTKKTKVVKNTLNPVWNETFTFEVTLP 60

Query: 64 -VGVLSLEVFDKDRFKADDKMGKAY 87
           +  L +EV+D DRF  DD +G+  
Sbjct: 61 ELAELRIEVYDYDRFGKDDFIGEVT 85

Length = 85

>gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB)

 Score = 85.2 bits (211), Expect = 3e-22
 Identities = 36/101 (35%), Positives = 51/101 (50%), Gaps = 5/101 (4%)

Query: 7   QLKVTVVQGKRLVIRD-FKSSDPYVVLKLGNQ---MAKTKVINSCLNPVWNEEHSLSLTE 62
            L V ++  + L  +D    SDPYV + L        KTKV+ + LNPVWNE     +  
Sbjct: 1   TLTVKIISARNLPPKDKGGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPP 60

Query: 63  PVG-VLSLEVFDKDRFKADDKMGKAYLNLQPIISAARLRHL 102
           P    L +EV+DKDRF  DD +G+  + L  ++   R   L
Sbjct: 61  PELAELEIEVYDKDRFGRDDFIGQVTIPLSDLLLGGRHEKL 101

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101

>gnl|CDD|176007 cd04042, C2A_MCTP_PRT, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 80.4 bits (199), Expect = 4e-20
 Identities = 37/89 (41%), Positives = 54/89 (60%), Gaps = 8/89 (8%)

Query: 7  QLKVTVVQGKRLVIRDFK-SSDPYVVLKLGNQMA-KTKVINSCLNPVWNEEHSL---SLT 61
          QL + + +G+ L  RD   +SDPYV  K G +   K+K I   LNPVW+E+ +L    +T
Sbjct: 1  QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVT 60

Query: 62 EPVGVLSLEVFDKDRFKADDKMGKAYLNL 90
          +P   L ++VFD DR   DD MG A+++L
Sbjct: 61 QP---LYIKVFDYDRGLTDDFMGSAFVDL 86

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 121

>gnl|CDD|175990 cd04024, C2A_Synaptotagmin-like, C2 domain first repeat present in Synaptotagmin-like proteins

 Score = 76.3 bits (188), Expect = 2e-18
 Identities = 33/93 (35%), Positives = 49/93 (52%), Gaps = 4/93 (4%)

Query: 6  GQLKVTVVQGKRLVIRDFKS---SDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTE 62
          G L+V VV+ K L  +D      SDPY +L +G Q  KT+ I + LNP WN      +  
Sbjct: 1  GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFS 60

Query: 63 P-VGVLSLEVFDKDRFKADDKMGKAYLNLQPII 94
              +L L ++DKDRF   D +G+  + L+ + 
Sbjct: 61 AQNQLLKLILWDKDRFAGKDYLGEFDIALEEVF 93

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128

>gnl|CDD|176005 cd04040, C2D_Tricalbin-like, C2 domain fourth repeat present in Tricalbin-like proteins

 Score = 72.2 bits (178), Expect = 4e-17
 Identities = 39/94 (41%), Positives = 51/94 (54%), Gaps = 13/94 (13%)

Query: 8  LKVTVVQGKRL--VIRDFKSSDPYVVLKL-GNQMAKTKVINSCLNPVWNEEHSLSLTEPV 64
          L V V+  + L    R+ KS DP+V   L G ++ KTK I   LNPVWNE    S   PV
Sbjct: 1  LTVDVISAENLPSADRNGKS-DPFVKFYLNGEKVFKTKTIKKTLNPVWNE----SFEVPV 55

Query: 65 G-----VLSLEVFDKDRFKADDKMGKAYLNLQPI 93
                VL +EV+D DR   DD +G AY++L  +
Sbjct: 56 PSRVRAVLKVEVYDWDRGGKDDLLGSAYIDLSDL 89

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 115

>gnl|CDD|176006 cd04041, C2A_fungal, C2 domain first repeat; fungal group

 Score = 71.9 bits (177), Expect = 4e-17
 Identities = 37/99 (37%), Positives = 54/99 (54%), Gaps = 9/99 (9%)

Query: 6  GQLKVTVVQGKRLVIRDFK--SSDPYVVL---KLGNQMAKTKVINSCLNPVWNEEHSLSL 60
          G L VT+ +   L   DF   SSDPYV     K G  +  T++I   LNPVW E   + +
Sbjct: 1  GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLV 60

Query: 61 T-EPVGV---LSLEVFDKDRFKADDKMGKAYLNLQPIIS 95
          T + V     LS  ++D DRF ADD++G+  ++L+ +I 
Sbjct: 61 TPDEVKAGERLSCRLWDSDRFTADDRLGRVEIDLKELIE 99

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 111

>gnl|CDD|176022 cd08376, C2B_MCTP_PRT, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 66.9 bits (164), Expect = 5e-15
 Identities = 33/83 (39%), Positives = 50/83 (60%), Gaps = 2/83 (2%)

Query: 10 VTVVQGKRLVIRDFKS-SDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSL-TEPVGVL 67
          + +V+GK L   D    SDPYV  +LGN+  K+KV +  LNP W E+  L L  +   +L
Sbjct: 4  IVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQIL 63

Query: 68 SLEVFDKDRFKADDKMGKAYLNL 90
           +EV+DKD  K D+ +G+  ++L
Sbjct: 64 EIEVWDKDTGKKDEFIGRCEIDL 86

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 116

>gnl|CDD|176037 cd08391, C2A_C2C_Synaptotagmin_like, C2 domain first and third repeat in Synaptotagmin-like proteins

 Score = 66.9 bits (164), Expect = 6e-15
 Identities = 36/97 (37%), Positives = 57/97 (58%), Gaps = 9/97 (9%)

Query: 6  GQLKVTVVQGKRLVIRD------FKS-SDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSL 58
          G L++ V++ + LV +D       K  SDPYV++++G Q  K+KVI   LNP WNE +  
Sbjct: 1  GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEA 60

Query: 59 SLTEPVGV-LSLEVFDKDRFKADDKMGKAYLNLQPII 94
           + E  G  L +E+FD+D  K DD +G+  ++L  + 
Sbjct: 61 VVDEVPGQELEIELFDEDPDK-DDFLGRLSIDLGSVE 96

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains either the first or third repeat in Synaptotagmin-like proteins with a type-I topology. Length = 121

>gnl|CDD|175992 cd04026, C2_PKC_alpha_gamma, C2 domain in Protein Kinase C (PKC) alpha and gamma

 Score = 63.4 bits (155), Expect = 2e-13
 Identities = 36/88 (40%), Positives = 43/88 (48%), Gaps = 8/88 (9%)

Query: 6   GQLKVTVVQGKRLVIRDFKS-SDPYVVLKL-----GNQMAKTKVINSCLNPVWNEEHSLS 59
            +L V V + K L+  D    SDPYV LKL          KTK I   LNPVWNE  +  
Sbjct: 13  NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFD 72

Query: 60  LTEP--VGVLSLEVFDKDRFKADDKMGK 85
           L        LS+EV+D DR   +D MG 
Sbjct: 73  LKPADKDRRLSIEVWDWDRTTRNDFMGS 100

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 131

>gnl|CDD|176009 cd04044, C2A_Tricalbin-like, C2 domain first repeat present in Tricalbin-like proteins

 Score = 61.4 bits (150), Expect = 6e-13
 Identities = 34/92 (36%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 6  GQLKVTVVQGKRLVIRDFKSS--DPYVVLKLGNQ--MAKTKVINSCLNPVWNEEHSL--- 58
          G L VT+   + L   D      DPYV   + N+  +A+TKV     NPVWNE   +   
Sbjct: 2  GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVN 61

Query: 59 SLTEPVGVLSLEVFDKDRFKADDKMGKAYLNL 90
          SLTEP   L+L V+D +  + D  +G A  +L
Sbjct: 62 SLTEP---LNLTVYDFNDKRKDKLIGTAEFDL 90

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 124

>gnl|CDD|176014 cd04049, C2_putative_Elicitor-responsive_gene, C2 domain present in the putative elicitor-responsive gene

 Score = 61.6 bits (150), Expect = 6e-13
 Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 6/106 (5%)

Query: 6   GQLKVTVVQGKRLVIRDF-KSSDPYVVLKLGNQMAKTKVI-NSCLNPVWNEEHSLSLTEP 63
           G L+V ++  K L   DF    DPYV+++   Q  K+KV      NP WNE+   ++  P
Sbjct: 1   GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYP 60

Query: 64  VGV----LSLEVFDKDRFKADDKMGKAYLNLQPIISAARLRHLVHV 105
                  L L + DKD F  DD +G+A ++L+ +           +
Sbjct: 61  GWGGDTKLILRIMDKDNFSDDDFIGEATIHLKGLFEEGVEPGTAEL 106

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members have a type-II topology. Length = 124

>gnl|CDD|176070 cd08688, C2_KIAA0528-like, C2 domain found in the Human KIAA0528 cDNA clone

 Score = 60.4 bits (147), Expect = 1e-12
 Identities = 35/97 (36%), Positives = 51/97 (52%), Gaps = 12/97 (12%)

Query: 8  LKVTVVQGKRLVIRDFKSS---DPYVVLKLGNQMAKTKVINSCLNPVWNEE------HSL 58
          LKV VV  + L + D +SS   D +V +K G+   KT V+   LNPVWN E         
Sbjct: 1  LKVRVVAARDLPVMD-RSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDE 59

Query: 59 SLTEPVGVLSLEVFDKDRFKADDKMGKAYLNLQPIIS 95
           L +    L + V D D + A+D +GK Y++L P++ 
Sbjct: 60 ELQDE--PLQIRVMDHDTYSANDAIGKVYIDLNPLLL 94

The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 110

>gnl|CDD|176018 cd04054, C2A_Rasal1_RasA4, C2 domain first repeat present in RasA1 and RasA4

 Score = 59.5 bits (144), Expect = 4e-12
 Identities = 32/93 (34%), Positives = 51/93 (54%), Gaps = 2/93 (2%)

Query: 8  LKVTVVQGKRLVIRDFK-SSDPYVVLKLGNQ-MAKTKVINSCLNPVWNEEHSLSLTEPVG 65
          L + +V+GK L  +D   SSDPY ++K+ N+ + +T  +   LNP W EE+++ L     
Sbjct: 2  LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGFH 61

Query: 66 VLSLEVFDKDRFKADDKMGKAYLNLQPIISAAR 98
           +S  V D+D    DD +GK  L  + I +  R
Sbjct: 62 TVSFYVLDEDTLSRDDVIGKVSLTREVISAHPR 94

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 121

>gnl|CDD|176001 cd04036, C2_cPLA2, C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

 Score = 58.4 bits (142), Expect = 8e-12
 Identities = 29/85 (34%), Positives = 40/85 (47%), Gaps = 6/85 (7%)

Query: 7  QLKVTVVQGKRLVIRDFKS-SDPYVVLKL---GNQMAKTKVINSCLNPVWNEEHSLSLTE 62
           L V V++   +   D  S  D YV L L    ++  +TK I + +NPVWNE     +  
Sbjct: 1  LLTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQS 60

Query: 63 PV-GVLSLEVFDKDRFKADDKMGKA 86
           V  VL L V D+D    DD +G  
Sbjct: 61 QVKNVLELTVMDEDYVM-DDHLGTV 84

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members of this cd have a type-II topology. Length = 119

>gnl|CDD|175999 cd04033, C2_NEDD4_NEDD4L, C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

 Score = 57.0 bits (138), Expect = 4e-11
 Identities = 36/107 (33%), Positives = 49/107 (45%), Gaps = 10/107 (9%)

Query: 8   LKVTVVQGKRLVIRD-FKSSDPYVVLKLGNQMA-------KTKVINSCLNPVWNEEHSLS 59
           L+V V+ G  L  +D F +SDPYV + L +          +TK I   LNP WNEE    
Sbjct: 2   LRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFR 61

Query: 60  LTEPVGVLSLEVFDKDRFKADDKMGKA--YLNLQPIISAARLRHLVH 104
           +      L  EVFD++R   DD +G+    LN  P  +    R    
Sbjct: 62  VNPREHRLLFEVFDENRLTRDDFLGQVEVPLNNLPTETPGNERRYTF 108

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 133

>gnl|CDD|175988 cd04021, C2_E3_ubiquitin_ligase, C2 domain present in E3 ubiquitin ligase

 Score = 56.1 bits (136), Expect = 7e-11
 Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 2/90 (2%)

Query: 7  QLKVTVVQGKRLVIRDFKSSDPYVVLKLGNQMA-KTKVINSCLNPVWNEEHSLSLTEPVG 65
          QL++TV   K          DPYV + +  Q   KT+V     NP WNE  ++ +T P  
Sbjct: 3  QLQITVESAKLKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVT-PQS 61

Query: 66 VLSLEVFDKDRFKADDKMGKAYLNLQPIIS 95
           L  +V+     KAD  +G+A L+L  I+ 
Sbjct: 62 TLEFKVWSHHTLKADVLLGEASLDLSDILK 91

E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125

>gnl|CDD|176008 cd04043, C2_Munc13_fungal, C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

 Score = 55.7 bits (135), Expect = 1e-10
 Identities = 30/90 (33%), Positives = 42/90 (46%), Gaps = 9/90 (10%)

Query: 10 VTVVQGKRLV-IRDFKSSDPYVVL---KLGNQMAKTKVINSCLNPVWNEEHSLSLTEPVG 65
          + +V+ + L        SDPYV L       ++AKT+ I   LNP W+EE    L  P G
Sbjct: 5  IRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEE--FELEVPAG 62

Query: 66 V---LSLEVFDKDRFKADDKMGKAYLNLQP 92
              +S  V+D+      D  G+A L L P
Sbjct: 63 EPLWISATVWDRSFVGKHDLCGRASLKLDP 92

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 126

>gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

 Score = 57.8 bits (140), Expect = 2e-10
 Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 10/94 (10%)

Query: 4   PFGQLKVTVVQGKRLVIRDF---KSSDPYVVLKL-GNQMAKTKVINSCLNPVWNEEHSL- 58
             G ++V +   + L   D     + DPY+ +      + KT+V  + LNPVWNE   + 
Sbjct: 434 AIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYIL 493

Query: 59  --SLTEPVGVLSLEVFDKDRFKADDKMGKAYLNL 90
             S T+P   L+L ++D + FK+D  +G   L+L
Sbjct: 494 LNSFTDP---LNLSLYDFNSFKSDKVVGSTQLDL 524

Length = 1227

>gnl|CDD|176023 cd08377, C2C_MCTP_PRT, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 54.2 bits (131), Expect = 3e-10
 Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 1/82 (1%)

Query: 6  GQLKVTVVQGKRLVIRDFK-SSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEPV 64
          G L+V V++   L   D    SDP+ VL+L N   +T  I   LNP WN+  +  + +  
Sbjct: 1  GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDIH 60

Query: 65 GVLSLEVFDKDRFKADDKMGKA 86
           VL + V+D+D+ K  + +GK 
Sbjct: 61 DVLEVTVYDEDKDKKPEFLGKV 82

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 119

>gnl|CDD|176032 cd08386, C2A_Synaptotagmin-7, C2A domain first repeat present in Synaptotagmin 7

 Score = 54.3 bits (131), Expect = 4e-10
 Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 8   LKVTVVQGKRLVIRDFK-SSDPYVVLKL----GNQMAKTKVINSCLNPVWNEEHS---LS 59
           L + +++   L  +DF  +SDP+V + L     +++ +TKV    LNP WNE        
Sbjct: 18  LTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKL-ETKVKRKNLNPHWNETFLFEGFP 76

Query: 60  LTEPVG-VLSLEVFDKDRFKADDKMGKAYLNLQPI 93
             +    VL L+V D DRF  +D +G+  L L  +
Sbjct: 77  YEKLQQRVLYLQVLDYDRFSRNDPIGEVSLPLNKV 111

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125

>gnl|CDD|176029 cd08383, C2A_RasGAP, C2 domain (first repeat) of Ras GTPase activating proteins (GAPs)

 Score = 53.8 bits (130), Expect = 5e-10
 Identities = 32/118 (27%), Positives = 47/118 (39%), Gaps = 16/118 (13%)

Query: 7   QLKVTVVQGKRLVIRDFKSSDPYVVLKLGN-QMAKTKVINSCLNPVWNEEHSLSLTEPVG 65
            L++ +++ K L  +   + DPY  + L   ++A+TK +   LNP W EE       P  
Sbjct: 1   SLRLRILEAKNLPSK--GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDV 57

Query: 66  V---LSLEVFDKDRFKADDKMGKAYLNLQPIISAARLRHLVHVSSGETPLRKIIPDSE 120
               LS    DK     D  +GK  L+            L        PL  + PDSE
Sbjct: 58  TFFTLSFYNKDKRSKDRDIVIGKVALSKLD---------LGQGKDEWFPLTPVDPDSE 106

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 117

>gnl|CDD|176030 cd08384, C2B_Rabphilin_Doc2, C2 domain second repeat present in Rabphilin and Double C2 domain

 Score = 53.5 bits (129), Expect = 8e-10
 Identities = 33/105 (31%), Positives = 47/105 (44%), Gaps = 11/105 (10%)

Query: 6   GQLKVTVVQGKRLVIRDFK-SSDPYVVLKL-----GNQMAKTKVINSCLNPVWNEEHSLS 59
             L V +++   L   D    SDP+V L L          KT+V    LNP +NEE    
Sbjct: 13  RGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYD 72

Query: 60  LTEP-VGVLSLE--VFDKDRFKADDKMGKAYLNLQPIISAARLRH 101
           +    +   +LE  V+DKD  K++D +G   L +       RLRH
Sbjct: 73  IKHSDLAKKTLEITVWDKDIGKSNDYIGGLQLGINA--KGERLRH 115

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 133

>gnl|CDD|176028 cd08382, C2_Smurf-like, C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins

 Score = 52.7 bits (127), Expect = 1e-09
 Identities = 36/128 (28%), Positives = 61/128 (47%), Gaps = 13/128 (10%)

Query: 8   LKVTVVQGKRLVIRD-FKSSDPYVVLKL-GNQMAKTKVINSCLNPVWNEEHSLSLTEPVG 65
           +++TV+    L  RD F+  DP+ V+ + G Q   T V    L+P WNE   L++  P  
Sbjct: 2   VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVG-PSS 60

Query: 66  VLSLEVFDKDRFKADDKMGKAYLNLQPIISAARLRHLVHVSSGET--PLRKIIPDSENCL 123
           +++++VFD+ +FK   K  + +L    I + A L       +G     LRK+       L
Sbjct: 61  IITIQVFDQKKFK---KKDQGFLGCVRIRANAVLPLK---DTGYQRLDLRKLKKSDN--L 112

Query: 124 ARESSIIC 131
           +    I+ 
Sbjct: 113 SVRGKIVV 120

A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have type-II topology. Length = 123

>gnl|CDD|176021 cd08375, C2_Intersectin, C2 domain present in Intersectin

 Score = 53.2 bits (128), Expect = 1e-09
 Identities = 37/118 (31%), Positives = 61/118 (51%), Gaps = 10/118 (8%)

Query: 6   GQLKVTVVQGKRLVIRDFKS-SDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTE-P 63
           G+L V +V+G+ L   +    SDPY  + +G+Q  KTKV++  LNP WN      + +  
Sbjct: 15  GRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLE 74

Query: 64  VGVLSLEVFDKDRFKADDKMGKAYLNLQPIISAARLRH-------LVH-VSSGETPLR 113
             VL + VFD+D F  DD +G+  + +  I+   +          L+H V +GE  ++
Sbjct: 75  QDVLCITVFDRDFFSPDDFLGRTEIRVADILKETKESKGPITKRLLLHEVPTGEVVVK 132

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. The members here have topology I. Length = 136

>gnl|CDD|175976 cd04009, C2B_Munc13-like, C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

 Score = 52.2 bits (126), Expect = 2e-09
 Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 12/81 (14%)

Query: 25  SSDPYVVLKL-------GNQMAKTKVINSCLNPVWNEEHSLSLT-----EPVGVLSLEVF 72
           SSDP+V ++L            KT+V    L P+++E    ++          +L   V 
Sbjct: 36  SSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFTVK 95

Query: 73  DKDRFKADDKMGKAYLNLQPI 93
           D D   ++D  G+A+L L  I
Sbjct: 96  DYDLLGSNDFEGEAFLPLNDI 116

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 133

>gnl|CDD|175975 cd00276, C2B_Synaptotagmin, C2 domain second repeat present in Synaptotagmin

 Score = 52.2 bits (126), Expect = 2e-09
 Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 9/92 (9%)

Query: 6   GQLKVTVVQGKRLVIRDFK-SSDPYV---VLKLGNQMA--KTKVINSCLNPVWNEEHSLS 59
            +L V V++ + L   D K  SDPYV   +L+ G ++   KT V    LNPV+NE  S  
Sbjct: 14  ERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFD 73

Query: 60  LTE---PVGVLSLEVFDKDRFKADDKMGKAYL 88
           +         L + V DKD    ++ +G+  L
Sbjct: 74  VPAEQLEEVSLVITVVDKDSVGRNEVIGQVVL 105

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134

>gnl|CDD|176010 cd04045, C2C_Tricalbin-like, C2 domain third repeat present in Tricalbin-like proteins

 Score = 51.4 bits (124), Expect = 4e-09
 Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 11/75 (14%)

Query: 26 SDPYV-VLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEPVGVLSLEVFD-----KDRFKA 79
           DPYV VL  G    +T  I++ LNPVW+E   + +T P   ++LEV D     KDR   
Sbjct: 22 IDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSPNQKITLEVMDYEKVGKDRS-- 79

Query: 80 DDKMGKAYLNLQPII 94
             +G   +N+  +I
Sbjct: 80 ---LGSVEINVSDLI 91

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 120

>gnl|CDD|176004 cd04039, C2_PSD, C2 domain present in Phosphatidylserine decarboxylase (PSD)

 Score = 50.7 bits (122), Expect = 6e-09
 Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 16/81 (19%)

Query: 27  DPYVVLKLGNQMAKTKVINSCLNPVWNE---------EHSLSLTEPVGVLSLEVFDKDRF 77
           DP+V++  G ++ +T      LNPV+NE         E +         +  +V DKD+F
Sbjct: 27  DPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFD-------IQFKVLDKDKF 79

Query: 78  KADDKMGKAYLNLQPIISAAR 98
             +D +    L++Q +++AA 
Sbjct: 80  SFNDYVATGSLSVQELLNAAP 100

PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 108

>gnl|CDD|176031 cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

 Score = 50.7 bits (122), Expect = 8e-09
 Identities = 33/96 (34%), Positives = 43/96 (44%), Gaps = 15/96 (15%)

Query: 6   GQLKVTVVQGKRLVIRDFK-SSDPYVVLKLGNQMAK---TKVINSCLNPVWNEEHSLSLT 61
            QL V ++Q   L   D   +SDPYV + L     K   TKV    LNPV+NE    + T
Sbjct: 16  NQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNE----TFT 71

Query: 62  EPV-------GVLSLEVFDKDRFKADDKMGKAYLNL 90
             V         L   V+D DRF   D +G+  + L
Sbjct: 72  FKVPYSELGNKTLVFSVYDFDRFSKHDLIGEVRVPL 107

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124

>gnl|CDD|175985 cd04018, C2C_Ferlin, C2 domain third repeat in Ferlin

 Score = 50.3 bits (121), Expect = 2e-08
 Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 8/72 (11%)

Query: 27  DPYVVLKLGNQMAKTKVINSCLNPVWNEEHSL-----SLTEPVGVLSLEVFDKDRFKADD 81
           DPYV +    Q  KT V  +  NP WNE+         L E    + +++ D DR   DD
Sbjct: 36  DPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCE---RIKIQIRDWDRVGNDD 92

Query: 82  KMGKAYLNLQPI 93
            +G  +++L  I
Sbjct: 93  VIGTHFIDLSKI 104

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 151

>gnl|CDD|175997 cd04031, C2A_RIM1alpha, C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

 Score = 49.2 bits (118), Expect = 3e-08
 Identities = 33/97 (34%), Positives = 51/97 (52%), Gaps = 12/97 (12%)

Query: 6   GQLKVTVVQGKRLVIRDFKS-SDPYVVLKL------GNQMAKTKVINSCLNPVWNE--EH 56
            QL VTV+Q + L  RD  S  +PYV + L       ++  +TK +   LNP WN+  E+
Sbjct: 16  SQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSK-RRTKTVKKTLNPEWNQTFEY 74

Query: 57  SLSLTEPVGVLSLEV--FDKDRFKADDKMGKAYLNLQ 91
           S    E +   +LEV  +D DR   +D +G+  ++L 
Sbjct: 75  SNVRRETLKERTLEVTVWDYDRDGENDFLGEVVIDLA 111

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology and do not bind Ca2+. Length = 125

>gnl|CDD|176002 cd04037, C2E_Ferlin, C2 domain fifth repeat in Ferlin

 Score = 49.1 bits (118), Expect = 3e-08
 Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 6/86 (6%)

Query: 10 VTVVQGKRLVIRDFKS-SDPYVVLKLGNQMAKTK---VINSCLNPVWNEEHSLSLTEPV- 64
          V VV+ + L  +D    SDPY+ +KLG +    +   + N  LNPV+ +   L  T P  
Sbjct: 4  VYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPN-TLNPVFGKMFELEATLPGN 62

Query: 65 GVLSLEVFDKDRFKADDKMGKAYLNL 90
           +L + V D D   +DD +G+  ++L
Sbjct: 63 SILKISVMDYDLLGSDDLIGETVIDL 88

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 124

>gnl|CDD|176025 cd08379, C2D_MCTP_PRT_plant, C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 48.2 bits (115), Expect = 7e-08
 Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 3/69 (4%)

Query: 6  GQLKVTVVQGKRLVIRDFKSS-DPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEPV 64
          G L    +   R   +D + S D Y V K G +  +T+ +    NP WNE+++  + +P 
Sbjct: 5  GILGAQGLDVLRA--KDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDPC 62

Query: 65 GVLSLEVFD 73
           VL++ VFD
Sbjct: 63 TVLTVGVFD 71

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 126

>gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

 Score = 50.5 bits (121), Expect = 8e-08
 Identities = 35/97 (36%), Positives = 49/97 (50%), Gaps = 11/97 (11%)

Query: 1    MRQPFGQLKVTVVQGKRLVIRDFKS-SDPYVVLKLGNQMA-KTKVINSCLNPVWNEEHSL 58
            M +  G L + +  G+ L   D    SDP+V L L  +   KTKV+   LNPVWNEE   
Sbjct: 1035 MVENSGYLTIMLRSGENLPSSDENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEF-- 1092

Query: 59   SLTEPV-----GVLSLEVFDKDRFKADDKMGKAYLNL 90
              T  V      VL++ V D D  + +D +G A ++L
Sbjct: 1093 --TIEVLNRVKDVLTINVNDWDSGEKNDLLGTAEIDL 1127

Length = 1227

>gnl|CDD|175984 cd04017, C2D_Ferlin, C2 domain fourth repeat in Ferlin

 Score = 48.3 bits (116), Expect = 8e-08
 Identities = 23/91 (25%), Positives = 44/91 (48%), Gaps = 11/91 (12%)

Query: 7  QLKVTVVQGKRLVIRDFKS-SDPYVVLKLGNQMAKTKVINSCLNPVWNEE---HSLSLTE 62
          QL+  + Q + L+  D    SDP+  +   NQ  +T+VI   L+P W++      + L  
Sbjct: 2  QLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYG 61

Query: 63 PVG-------VLSLEVFDKDRFKADDKMGKA 86
                    ++ +E+FD+D    D+ +G++
Sbjct: 62 SPEEIAQNPPLVVVELFDQDSVGKDEFLGRS 92

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 135

>gnl|CDD|175986 cd04019, C2C_MCTP_PRT_plant, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 48.4 bits (116), Expect = 9e-08
 Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 7/69 (10%)

Query: 8  LKVTVVQGKRLVIRDFKSSDP--YVVLKLGNQMAKTKV-INSCLNPVWNEEHSLSLTEPV 64
          L+VTV++ + LV  D K+  P  +V  +LGNQ+ +T+       NP WNEE      EP 
Sbjct: 2  LRVTVIEAQDLVPSD-KNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPF 60

Query: 65 G---VLSLE 70
              +LS+E
Sbjct: 61 EDHLILSVE 69

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 150

>gnl|CDD|176050 cd08405, C2B_Synaptotagmin-7, C2 domain second repeat present in Synaptotagmin 7

 Score = 47.8 bits (114), Expect = 1e-07
 Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 9/92 (9%)

Query: 6   GQLKVTVVQGKRLVIRDFK-SSDPYVVLKLGN-----QMAKTKVINSCLNPVWNEEHSLS 59
            ++ V +++ + L   D   +SDPYV + L       +  KT +    LNPV+NE    +
Sbjct: 15  NRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFN 74

Query: 60  L-TEPVGVLSLE--VFDKDRFKADDKMGKAYL 88
           +  E +   +L   V DKDR   +D +GK YL
Sbjct: 75  IPLERLRETTLIITVMDKDRLSRNDLIGKIYL 106

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|175998 cd04032, C2_Perforin, C2 domain of Perforin

 Score = 47.6 bits (114), Expect = 1e-07
 Identities = 31/83 (37%), Positives = 43/83 (51%), Gaps = 4/83 (4%)

Query: 6   GQLKVTVVQGKRLVIRDFKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEH---SLSLTE 62
             L VTV++   L    F S+D YV +  G Q  +T+VI +  NP WN      S+ L+ 
Sbjct: 28  ATLTVTVLRATGLWGDYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELS- 86

Query: 63  PVGVLSLEVFDKDRFKADDKMGK 85
           P G L  EV+D+D    DD +G 
Sbjct: 87  PGGKLRFEVWDRDNGWDDDLLGT 109

Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 127

>gnl|CDD|176000 cd04035, C2A_Rabphilin_Doc2, C2 domain first repeat present in Rabphilin and Double C2 domain

 Score = 46.9 bits (112), Expect = 2e-07
 Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 11/94 (11%)

Query: 7   QLKVTVVQGKRLVIRD-FKSSDPYVVLKL--GNQMA---KTKVINSCLNPVWNEE---HS 57
            L  T+++ K L   D    SDPYV L L  G   A   +TK ++   NP +NE    + 
Sbjct: 16  ALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYG 75

Query: 58  LSLTEPVG-VLSLEVFDKDRFKADDKMGKAYLNL 90
           ++  +     L L V D+DRF  +D +G+  + L
Sbjct: 76  ITEEDIQRKTLRLLVLDEDRFG-NDFLGETRIPL 108

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|175983 cd04016, C2_Tollip, C2 domain present in Toll-interacting protein (Tollip)

 Score = 46.9 bits (112), Expect = 2e-07
 Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 1/90 (1%)

Query: 6  GQLKVTVVQGKRLVIRDFKSSDPYVVLKLGNQMAKTKV-INSCLNPVWNEEHSLSLTEPV 64
          G+L +TVVQ K +        DPY  +++G+ + +T    N   NP WN+    +L E V
Sbjct: 2  GRLSITVVQAKLVKNYGLTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEGV 61

Query: 65 GVLSLEVFDKDRFKADDKMGKAYLNLQPII 94
            + +E+FD+  F  D+++   ++ +   +
Sbjct: 62 DSIYIEIFDERAFTMDERIAWTHITIPESV 91

Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 121

>gnl|CDD|175991 cd04025, C2B_RasA1_RasA4, C2 domain second repeat present in RasA1 and RasA4

 Score = 46.7 bits (111), Expect = 2e-07
 Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 2/91 (2%)

Query: 8  LKVTVVQGKRLVIRDFK-SSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEPV-G 65
          L+  V++ + L  +D   +SDP+V +    Q  +T V+     P WNE     L E    
Sbjct: 2  LRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADS 61

Query: 66 VLSLEVFDKDRFKADDKMGKAYLNLQPIISA 96
           LS+EV+D D    +D +GK   ++Q +  A
Sbjct: 62 PLSVEVWDWDLVSKNDFLGKVVFSIQTLQQA 92

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 123

>gnl|CDD|175989 cd04022, C2A_MCTP_PRT_plant, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 46.2 bits (110), Expect = 4e-07
 Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 5/76 (6%)

Query: 7  QLKVTVVQGKRLVIRDFK-SSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEPV- 64
          +L V VV  + L+ +D + SS  YV L    Q  +T+     LNPVWNE+   ++++P  
Sbjct: 1  KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSR 60

Query: 65 ---GVLSLEVFDKDRF 77
              VL + V++  R 
Sbjct: 61 LSNLVLEVYVYNDRRS 76

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127

>gnl|CDD|175993 cd04027, C2B_Munc13, C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

 Score = 45.3 bits (107), Expect = 8e-07
 Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 1/70 (1%)

Query: 7  QLKVTVVQGKRLVIRDFK-SSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEPVG 65
          ++ +TVV  + L+ +D   +SDPYV +++G    +TK I   LNPVWNE+          
Sbjct: 2  KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSSD 61

Query: 66 VLSLEVFDKD 75
           + + V+D+D
Sbjct: 62 RIKVRVWDED 71

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 127

>gnl|CDD|178585 PLN03008, PLN03008, Phospholipase D delta

 Score = 47.0 bits (111), Expect = 1e-06
 Identities = 29/94 (30%), Positives = 51/94 (54%), Gaps = 4/94 (4%)

Query: 21  RDFKSSDPYVVLKLGN-QMAKTKVINSCLNPVWNEEHSLSLTEPVGVLSLEVFDKDRFKA 79
           R   +SDPYV + +    +A+T+V+ +   P+W+E+ ++S+  P   L  +V D D F A
Sbjct: 72  RKVITSDPYVTVVVPQATLARTRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVFGA 131

Query: 80  DDKMGKAYLNLQPIISAARLRHLVHV--SSGETP 111
              +G A + ++ I S  R+     V  +SG+ P
Sbjct: 132 -QIIGTAKIPVRDIASGERISGWFPVLGASGKPP 164

Length = 868

>gnl|CDD|176011 cd04046, C2_Calpain, C2 domain present in Calpain proteins

 Score = 44.6 bits (106), Expect = 1e-06
 Identities = 20/87 (22%), Positives = 43/87 (49%), Gaps = 2/87 (2%)

Query: 10 VTVVQGKRLVIRDFKS-SDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEPVGVLS 68
          V V   + L  +D    +DPYV++K   +  ++ V    L+P ++ +      +P   + 
Sbjct: 7  VHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKPRSPIK 66

Query: 69 LEVFDKDRFKADDKMGKAYLNLQPIIS 95
          ++V++ +    D+ +G+A L+  P  S
Sbjct: 67 IQVWNSNLLC-DEFLGQATLSADPNDS 92

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126

>gnl|CDD|176063 cd08681, C2_fungal_Inn1p-like, C2 domain found in fungal Ingression 1 (Inn1) proteins

 Score = 43.8 bits (104), Expect = 3e-06
 Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 4/93 (4%)

Query: 6  GQLKVTVVQGKRLV-IRDFKSSDPYVVLKLGNQMAKTKVI-NSCLNPVWNEEHSLSLTEP 63
          G L V V++ + L   R     DPY VL++G    KTK       +P W+EE    +TE 
Sbjct: 1  GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITED 60

Query: 64 VG-VLSLEVFDKDRFKADDKMGKAYLNLQPIIS 95
             +L + VFD D  +  D +G   ++L P + 
Sbjct: 61 KKPILKVAVFDDD-KRKPDLIGDTEVDLSPALK 92

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contributing both to membrane ingression, as well as to stability of the contracting ring. Additionally, Inn1 might induce curvature of the plasma membrane adjacent to the contracting ring, thereby promoting ingression of the membrane. It has been shown that the C2 domain of human synaptotagmin induces curvature in target membranes and thereby contributes to fusion of these membranes with synaptic vesicles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 118

>gnl|CDD|176024 cd08378, C2B_MCTP_PRT_plant, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 43.8 bits (104), Expect = 3e-06
 Identities = 29/74 (39%), Positives = 37/74 (50%), Gaps = 4/74 (5%)

Query: 8  LKVTVVQGKRLVIRDFKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEPVGVL 67
          L V VV+ + L      S+DP V +KLGN    TK I    NP WN+  + S     G  
Sbjct: 2  LYVRVVKARGLPA---NSNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQGS- 57

Query: 68 SLEVFDKDRFKADD 81
          +LEV   D+ KA D
Sbjct: 58 TLEVSVWDKDKAKD 71

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 121

>gnl|CDD|176015 cd04050, C2B_Synaptotagmin-like, C2 domain second repeat present in Synaptotagmin-like proteins

 Score = 43.3 bits (103), Expect = 3e-06
 Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 4/65 (6%)

Query: 27 DPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEP-VGVLSLEVFDKDRFKADDKMGK 85
           PYV L +G    K+KV     NPVW E  +  +  P    L +EV D    K+   +G 
Sbjct: 22 SPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKTGKS---LGS 78

Query: 86 AYLNL 90
            L L
Sbjct: 79 LTLPL 83

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 105

>gnl|CDD|176056 cd08521, C2A_SLP, C2 domain first repeat present in Synaptotagmin-like proteins

 Score = 43.4 bits (103), Expect = 4e-06
 Identities = 30/99 (30%), Positives = 43/99 (43%), Gaps = 16/99 (16%)

Query: 6   GQLKVTVVQGKRLVIRDFK--SSDPYV---VL--KLGNQMAKTKVINSCLNPVWNE---- 54
           G L+V + + + L   D K   S+PYV   +L  K      KT V  +  NPV+NE    
Sbjct: 14  GSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKY 73

Query: 55  --EHSLSLTEPVGVLSLEVFDKDRFKADDKMGKAYLNLQ 91
               S   T     L L V+  DRF  +  +G+  + L 
Sbjct: 74  HISKSQLETR---TLQLSVWHHDRFGRNTFLGEVEIPLD 109

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|176033 cd08387, C2A_Synaptotagmin-8, C2A domain first repeat present in Synaptotagmin 8

 Score = 42.8 bits (101), Expect = 8e-06
 Identities = 27/103 (26%), Positives = 49/103 (47%), Gaps = 7/103 (6%)

Query: 4   PFGQLKVTVVQGKRLVIRDFKS-SDPYVVLKL---GNQMAKTKVINSCLNPVWNEEHSLS 59
             G L V ++Q + L  RDF   +DPY  ++L    +   ++K+    LNP ++E     
Sbjct: 14  DMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFE 73

Query: 60  LTE---PVGVLSLEVFDKDRFKADDKMGKAYLNLQPIISAARL 99
           +     P   L + ++D D+F  D+ +G   L L  +  + +L
Sbjct: 74  VPPQELPKRTLEVLLYDFDQFSRDECIGVVELPLAEVDLSEKL 116

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124

>gnl|CDD|175974 cd00275, C2_PLC_like, C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

 Score = 42.5 bits (101), Expect = 8e-06
 Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 11/84 (13%)

Query: 8  LKVTVVQG---KRLVIRDFKSSDPYVVLKL------GNQMAKTKVI-NSCLNPVWNEEHS 57
          L + ++ G    +         DPYV +++       +   KTKV+ N+  NPVWNE   
Sbjct: 4  LTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFE 63

Query: 58 LSLTEP-VGVLSLEVFDKDRFKAD 80
            +T P +  L   V+D+D    D
Sbjct: 64 FDVTVPELAFLRFVVYDEDSGDDD 87

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-II topology. Length = 128

>gnl|CDD|175987 cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat present in Synaptotagmin-like proteins 1-4

 Score = 42.7 bits (101), Expect = 1e-05
 Identities = 30/102 (29%), Positives = 44/102 (43%), Gaps = 20/102 (19%)

Query: 4   PFGQLKVTVVQGKRL-VIRDFKSSDPYV--VLKLGNQMA---KTKVINSCLNPVWNEEHS 57
             G+L V V + K L  ++   +SD +V   L          KT V+   +NPVWN  H+
Sbjct: 25  STGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWN--HT 82

Query: 58  LSLTEPVGV---------LSLEVFDKDRFKADDKMGKAYLNL 90
                  GV         L L V+D D+  ++D +G   L L
Sbjct: 83  FVYD---GVSPEDLSQACLELTVWDHDKLSSNDFLGGVRLGL 121

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 162

>gnl|CDD|176019 cd08373, C2A_Ferlin, C2 domain first repeat in Ferlin

 Score = 41.9 bits (99), Expect = 2e-05
 Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 3/78 (3%)

Query: 25 SSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLT---EPVGVLSLEVFDKDRFKADD 81
            D    +       KT+V+ + LNPVWNE     L    +P   L + V D ++   + 
Sbjct: 14 KGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNR 73

Query: 82 KMGKAYLNLQPIISAARL 99
           +G A ++LQ ++S   L
Sbjct: 74 LIGSATVSLQDLVSEGLL 91

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127

>gnl|CDD|176064 cd08682, C2_Rab11-FIP_classI, C2 domain found in Rab11-family interacting proteins (FIP) class I

 Score = 41.3 bits (97), Expect = 2e-05
 Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 7/88 (7%)

Query: 10 VTVVQGKRLVIRDFK-SSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEPVG--- 65
          VTV+Q + L+ +    ++D YV+++LG +   T V     +PVW EE S  L   +    
Sbjct: 3  VTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNG 62

Query: 66 ---VLSLEVFDKDRFKADDKMGKAYLNL 90
              L L V  ++    D  +G+  + L
Sbjct: 63 NRATLQLTVMHRNLLGLDKFLGQVSIPL 90

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The members in this CD are class I FIPs. The exact function of the Rab11 and FIP interaction is unknown, but there is speculation that it involves the role of forming a targeting complex that recruits a group of proteins involved in membrane transport to organelles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126

>gnl|CDD|175982 cd04015, C2_plant_PLD, C2 domain present in plant phospholipase D (PLD)

 Score = 41.9 bits (99), Expect = 2e-05
 Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 2/75 (2%)

Query: 25  SSDPYVVLKL-GNQMAKTKVINSCLNPVWNEEHSLSLTEPVGVLSLEVFDKDRFKADDKM 83
           +SDPY  + L G ++A+T+VI +  NPVWNE   +        +   V D D   A   +
Sbjct: 57  TSDPYATVDLAGARVARTRVIENSENPVWNESFHIYCAHYASHVEFTVKDNDVVGA-QLI 115

Query: 84  GKAYLNLQPIISAAR 98
           G+AY+ ++ ++S   
Sbjct: 116 GRAYIPVEDLLSGEP 130

PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 158

>gnl|CDD|175996 cd04030, C2C_KIAA1228, C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

 Score = 40.7 bits (96), Expect = 4e-05
 Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 24/115 (20%)

Query: 4   PFGQLKVTV---VQGKRLVI-----------RDFKSSDPYVVLKL-----GNQMAKTKVI 44
           P G++++T+    Q ++L++                 DPYV L L      +   KT V 
Sbjct: 1   PLGRIQLTIRYSSQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVK 60

Query: 45  NSCLNPVWNE--EHSLSLTE-PVGVLSLEVFDKDRFKADDK--MGKAYLNLQPII 94
              LNPV++E  E  +SL E     L + V +   F + +K  +G+  ++L  + 
Sbjct: 61  KDNLNPVFDETFEFPVSLEELKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLD 115

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 127

>gnl|CDD|176047 cd08402, C2B_Synaptotagmin-1, C2 domain second repeat present in Synaptotagmin 1

 Score = 39.7 bits (93), Expect = 9e-05
 Identities = 34/106 (32%), Positives = 47/106 (44%), Gaps = 13/106 (12%)

Query: 6   GQLKVTVVQGKRLVIRDFK-SSDPYV--VLKLGNQM---AKTKVINSCLNPVWNEEHSLS 59
           G+L V +++ K L   D    SDPYV   L    +     KT +    LNP +NE  S  
Sbjct: 15  GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFE 74

Query: 60  LT----EPVGVLSLEVFDKDRFKADDKMGKAYLNLQPIISAARLRH 101
           +     + V  L + V D DR   +D +GK  L      + A LRH
Sbjct: 75  VPFEQIQKVH-LIVTVLDYDRIGKNDPIGKVVLG--CNATGAELRH 117

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|176046 cd08401, C2A_RasA2_RasA3, C2 domain first repeat present in RasA2 and RasA3

 Score = 39.3 bits (92), Expect = 1e-04
 Identities = 29/119 (24%), Positives = 49/119 (41%), Gaps = 14/119 (11%)

Query: 7   QLKVTVVQGKRLVIRD--FKSSDPYVVLKLGNQ-MAKTKVINSCLNPVWNEEHSLSLTEP 63
            LK+ + + K L  R    K  D Y  + L  + + +TK +   L P + E+    +   
Sbjct: 1   SLKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRT 60

Query: 64  VGVLSLEVFDKDRFKADDKMGKAYLNLQPIISAARLRHLVHVSSGET--PLRKIIPDSE 120
              LS  ++D+D  + D  +GK          A +   L      +T  PL+ +  DSE
Sbjct: 61  FRHLSFYIYDRDVLRRDSVIGKV---------AIKKEDLHKYYGKDTWFPLQPVDADSE 110

RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 121

>gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 2/93 (2%)

Query: 4   PFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGN-QMAKTKVINSCLNPVWNEEHSLSLT 61
           P G ++V+V +   L        SDPY  + + N    +T   +S LNP+WNE   + +T
Sbjct: 709 PIGAIRVSVRKANDLRNEIPGGKSDPYATVLVNNLVKYRTIYGSSTLNPIWNEILYVPVT 768

Query: 62  EPVGVLSLEVFDKDRFKADDKMGKAYLNLQPII 94
                L+LE  D +    D  +G+  +N+  + 
Sbjct: 769 SKNQRLTLECMDYEESGDDRNLGEVNINVSNVS 801

Length = 1227

>gnl|CDD|175978 cd04011, C2B_Ferlin, C2 domain second repeat in Ferlin

 Score = 38.7 bits (91), Expect = 2e-04
 Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 8/83 (9%)

Query: 7  QLKVTVVQGKRLVIRDFKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEPV-- 64
          Q++V V++ ++LV  +    DP V +++G Q   T V      P +NE    +  E    
Sbjct: 5  QVRVRVIEARQLVGGN---IDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDE 61

Query: 65 ---GVLSLEVFDKDRFKADDKMG 84
              ++ + V+D    ++D  +G
Sbjct: 62 LFDKIIKISVYDSRSLRSDTLIG 84

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111

>gnl|CDD|176012 cd04047, C2B_Copine, C2 domain second repeat in Copine

 Score = 38.3 bits (90), Expect = 2e-04
 Identities = 20/90 (22%), Positives = 37/90 (41%), Gaps = 24/90 (26%)

Query: 23  FKSSDPYVVLKLGNQMA------KTKVINSCLNPVW-----------NEEHSLSLTEPVG 65
           F  SDP++ +   ++        +T+VI + LNPVW           N ++   +     
Sbjct: 18  FGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWKPFTIPLQKLCNGDYDRPIK---- 73

Query: 66  VLSLEVFDKDRFKADDKMGKAYLNLQPIIS 95
              +EV+D D     D +G+    L  ++ 
Sbjct: 74  ---IEVYDYDSSGKHDLIGEFETTLDELLK 100

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 110

>gnl|CDD|176034 cd08388, C2A_Synaptotagmin-4-11, C2A domain first repeat present in Synaptotagmins 4 and 11

 Score = 38.1 bits (89), Expect = 3e-04
 Identities = 31/111 (27%), Positives = 46/111 (41%), Gaps = 19/111 (17%)

Query: 8   LKVTVVQGKRLVIRDFKS--SDPYVVLKL---GNQMAKTKVINSCLNPVWNEEHSL---- 58
           L V +++ + L   D +S  SDPYV L+L        KT+V+    NPV++E  +     
Sbjct: 18  LLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIP 77

Query: 59  -----SLTEPVGVLSLEVFDKDRFKADDKMGKAYLNLQPIISAARLRHLVH 104
                 L+    VLS      DR+  DD +G+    L           LV 
Sbjct: 78  YNQLQDLSLHFAVLSF-----DRYSRDDVIGEVVCPLAGADLLNEGELLVS 123

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128

>gnl|CDD|176036 cd08390, C2A_Synaptotagmin-15-17, C2A domain first repeat present in Synaptotagmins 15 and 17

 Score = 38.0 bits (89), Expect = 4e-04
 Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 8/92 (8%)

Query: 7   QLKVTVVQGKRLVIR--DFKSSDPYVVLKL--GNQMAK-TKVINSCLNPVWNE--EHSLS 59
           QL V++++ + L  R  D    DP+V + L    + +  +KV     NP ++E     +S
Sbjct: 15  QLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVS 74

Query: 60  LTE-PVGVLSLEVFDKDRFKADDKMGKAYLNL 90
             E     L L V+D DRF     +G     L
Sbjct: 75  FKELQRRTLRLSVYDVDRFSRHCIIGHVLFPL 106

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|176013 cd04048, C2A_Copine, C2 domain first repeat in Copine

 Score = 37.2 bits (87), Expect = 7e-04
 Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 17/103 (16%)

Query: 13  VQGKRLVIRDFKS-SDPYVVLKLGNQ-------MAKTKVINSCLNPVWNEEHSLSLT--- 61
           +  + L+ +D  S SDP+VV+ +          + +T+VI + LNP +    + ++    
Sbjct: 7   ISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFV--TTFTVDYYF 64

Query: 62  EPVGVLSLEVFDKD----RFKADDKMGKAYLNLQPIISAARLR 100
           E V  L  EV+D D         D +G+A   L  I+S+   +
Sbjct: 65  EEVQKLRFEVYDVDSKSKDLSDHDFLGEAECTLGEIVSSPGQK 107

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 120

>gnl|CDD|176027 cd08381, C2B_PI3K_class_II, C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

 Score = 36.9 bits (86), Expect = 9e-04
 Identities = 27/94 (28%), Positives = 39/94 (41%), Gaps = 9/94 (9%)

Query: 6   GQLKVTVVQGKRLVIRDFKSSDPYVVLKL----GNQMA-KTKVINSCLNPVWNEE---HS 57
           G L V V+  K L + D    DPYV   L          KTKV+    NP +NE      
Sbjct: 13  GTLFVMVMHAKNLPLLDGSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDG 72

Query: 58  LSLTEPVG-VLSLEVFDKDRFKADDKMGKAYLNL 90
           L + +    VL + V+  D    ++ +G   + L
Sbjct: 73  LPVEDLQQRVLQVSVWSHDSLVENEFLGGVCIPL 106

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 122

>gnl|CDD|176049 cd08404, C2B_Synaptotagmin-4, C2 domain second repeat present in Synaptotagmin 4

 Score = 37.0 bits (86), Expect = 0.001
 Identities = 31/124 (25%), Positives = 49/124 (39%), Gaps = 15/124 (12%)

Query: 3   QP-FGQLKVTVVQGKRLVIRDFK-SSDPYV---VLKLGNQMAK--TKVINSCLNPVWNEE 55
           QP   +L V V++ + L   D    +DPYV   +     +++K  T V    LNPV+NE 
Sbjct: 11  QPTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNES 70

Query: 56  HSLSLTEPVG---VLSLEVFDKDRFKADDKMGKAYLNLQPIISAARLRHLVHVSSGETPL 112
               +         +   V D DR   ++ +G+  L  +   S        H      P 
Sbjct: 71  FVFDIPSEELEDISVEFLVLDSDRVTKNEVIGRLVLGPKASGSGGH-----HWKEVCNPP 125

Query: 113 RKII 116
           R+ I
Sbjct: 126 RRQI 129

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|176058 cd08676, C2A_Munc13-like, C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins

 Score = 37.0 bits (86), Expect = 0.001
 Identities = 30/108 (27%), Positives = 44/108 (40%), Gaps = 35/108 (32%)

Query: 8   LKVTVVQGKRLVIRDFKS-SDPYVVL------------------------KLGN-----Q 37
           LKVTV++ K L+ +D    SDPY +L                         L +      
Sbjct: 30  LKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKS 89

Query: 38  MAKTKVINSCLNPVWNEEHSLSLTE-PVGVLSLEVFDKDRFKADDKMG 84
           +  T+V    LNPVWNE     + +     L L+++D D    DD +G
Sbjct: 90  IKVTEVKPQTLNPVWNETFRFEVEDVSNDQLHLDIWDHD----DDFLG 133

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 153

>gnl|CDD|178538 PLN02952, PLN02952, phosphoinositide phospholipase C

 Score = 38.1 bits (88), Expect = 0.001
 Identities = 28/74 (37%), Positives = 37/74 (50%), Gaps = 8/74 (10%)

Query: 40  KTKVINSCLNPVWNEEHSLSLTEP-VGVLSLEVFDKDRFKADDKMGKAYL---NLQPIIS 95
           KTK+I     P WNEE S  LT P + +L +EV + D  + DD  G+  L    L+P I 
Sbjct: 516 KTKIIEDNWYPAWNEEFSFPLTVPELALLRIEVREYDMSEKDDFGGQTCLPVSELRPGIR 575

Query: 96  AARLRHLVHVSSGE 109
           +  L    H   GE
Sbjct: 576 SVPL----HDKKGE 585

Length = 599

>gnl|CDD|165867 PLN02223, PLN02223, phosphoinositide phospholipase C

 Score = 36.9 bits (85), Expect = 0.002
 Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 14/104 (13%)

Query: 8   LKVTVVQGKRLVIRDFKSS-------DPYVVLKLG-----NQMAKTKVINSCLNPVWNEE 55
           LKV +  G   ++ DFK         D YV + +       ++ KT V N+   P W EE
Sbjct: 411 LKVKIYMGDGWIV-DFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEE 469

Query: 56  HSLSLTEP-VGVLSLEVFDKDRFKADDKMGKAYLNLQPIISAAR 98
            +  LT P + ++S EV+D +   AD   G+  L +  +I   R
Sbjct: 470 FTFPLTYPDLALISFEVYDYEVSTADAFCGQTCLPVSELIEGIR 513

Length = 537

>gnl|CDD|176055 cd08410, C2B_Synaptotagmin-17, C2 domain second repeat present in Synaptotagmin 17

 Score = 35.3 bits (81), Expect = 0.004
 Identities = 19/63 (30%), Positives = 37/63 (58%), Gaps = 6/63 (9%)

Query: 6  GQLKVTVVQGKRLVIRDF-KSSDPYVVLKL--GNQMAKTK---VINSCLNPVWNEEHSLS 59
          G+L V +++ K+L+  D  + SDP+V ++L  G ++ KTK    +   ++P +NE  S  
Sbjct: 14 GRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFK 73

Query: 60 LTE 62
          + +
Sbjct: 74 VPQ 76

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 135

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	164
KOG1030	168	consensus Predicted Ca2+-dependent phospholipid-bi	100.0
cd04038	145	C2_ArfGAP C2 domain present in Arf GTPase Activati	99.97
cd04016	121	C2_Tollip C2 domain present in Toll-interacting pr	99.94
cd08682	126	C2_Rab11-FIP_classI C2 domain found in Rab11-famil	99.93
cd04042	121	C2A_MCTP_PRT C2 domain first repeat found in Multi	99.93
cd08375	136	C2_Intersectin C2 domain present in Intersectin. A	99.92
cd08376	116	C2B_MCTP_PRT C2 domain second repeat found in Mult	99.92
cd08379	126	C2D_MCTP_PRT_plant C2 domain fourth repeat found i	99.91
cd08681	118	C2_fungal_Inn1p-like C2 domain found in fungal Ing	99.91
cd04022	127	C2A_MCTP_PRT_plant C2 domain first repeat found in	99.91
cd08391	121	C2A_C2C_Synaptotagmin_like C2 domain first and thi	99.91
cd08678	126	C2_C21orf25-like C2 domain found in the Human chro	99.91
cd04044	124	C2A_Tricalbin-like C2 domain first repeat present	99.91
cd08401	121	C2A_RasA2_RasA3 C2 domain first repeat present in	99.91
cd04024	128	C2A_Synaptotagmin-like C2 domain first repeat pres	99.9
cd04019	150	C2C_MCTP_PRT_plant C2 domain third repeat found in	99.9
cd08377	119	C2C_MCTP_PRT C2 domain third repeat found in Multi	99.9
cd04033	133	C2_NEDD4_NEDD4L C2 domain present in the Human neu	99.89
cd08677	118	C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a	99.89
cd04025	123	C2B_RasA1_RasA4 C2 domain second repeat present in	99.89
cd08395	120	C2C_Munc13 C2 domain third repeat in Munc13 (mamma	99.89
cd04036	119	C2_cPLA2 C2 domain present in cytosolic PhosphoLip	99.89
cd04046	126	C2_Calpain C2 domain present in Calpain proteins.	99.89
cd08381	122	C2B_PI3K_class_II C2 domain second repeat present	99.88
cd04054	121	C2A_Rasal1_RasA4 C2 domain first repeat present in	99.88
cd04015	158	C2_plant_PLD C2 domain present in plant phospholip	99.88
cd04028	146	C2B_RIM1alpha C2 domain second repeat contained in	99.88
cd08400	126	C2_Ras_p21A1 C2 domain present in RAS p21 protein	99.88
cd08378	121	C2B_MCTP_PRT_plant C2 domain second repeat found i	99.87
cd04029	125	C2A_SLP-4_5 C2 domain first repeat present in Syna	99.87
cd04014	132	C2_PKC_epsilon C2 domain in Protein Kinase C (PKC)	99.87
cd08394	127	C2A_Munc13 C2 domain first repeat in Munc13 (mamma	99.87
cd08373	127	C2A_Ferlin C2 domain first repeat in Ferlin. Ferli	99.87
cd04039	108	C2_PSD C2 domain present in Phosphatidylserine dec	99.87
cd08387	124	C2A_Synaptotagmin-8 C2A domain first repeat presen	99.87
cd04027	127	C2B_Munc13 C2 domain second repeat in Munc13 (mamm	99.87
cd08393	125	C2A_SLP-1_2 C2 domain first repeat present in Syna	99.86
cd04050	105	C2B_Synaptotagmin-like C2 domain second repeat pre	99.86
cd08385	124	C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe	99.86
cd04017	135	C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl	99.86
cd08688	110	C2_KIAA0528-like C2 domain found in the Human KIAA	99.86
cd08382	123	C2_Smurf-like C2 domain present in Smad ubiquitina	99.85
cd04043	126	C2_Munc13_fungal C2 domain in Munc13 (mammalian un	99.85
cd04031	125	C2A_RIM1alpha C2 domain first repeat contained in	99.85
cd04049	124	C2_putative_Elicitor-responsive_gene C2 domain pre	99.85
cd04051	125	C2_SRC2_like C2 domain present in Soybean genes Re	99.85
cd04045	120	C2C_Tricalbin-like C2 domain third repeat present	99.85
cd04030	127	C2C_KIAA1228 C2 domain third repeat present in unc	99.85
cd04041	111	C2A_fungal C2 domain first repeat; fungal group. C	99.85
cd08388	128	C2A_Synaptotagmin-4-11 C2A domain first repeat pre	99.85
cd04010	148	C2B_RasA3 C2 domain second repeat present in RAS p	99.84
cd08392	128	C2A_SLP-3 C2 domain first repeat present in Synapt	99.84
cd08680	124	C2_Kibra C2 domain found in Human protein Kibra. K	99.84
cd04018	151	C2C_Ferlin C2 domain third repeat in Ferlin. Ferli	99.84
cd08685	119	C2_RGS-like C2 domain of the Regulator Of G-Protei	99.84
cd04020	162	C2B_SLP_1-2-3-4 C2 domain second repeat present in	99.84
cd08386	125	C2A_Synaptotagmin-7 C2A domain first repeat presen	99.84
cd08690	155	C2_Freud-1 C2 domain found in 5' repressor element	99.84
cd04032	127	C2_Perforin C2 domain of Perforin. Perforin contai	99.83
cd04011	111	C2B_Ferlin C2 domain second repeat in Ferlin. Ferl	99.83
cd04052	111	C2B_Tricalbin-like C2 domain second repeat present	99.83
cd08389	124	C2A_Synaptotagmin-14_16 C2A domain first repeat pr	99.83
cd08390	123	C2A_Synaptotagmin-15-17 C2A domain first repeat pr	99.83
cd08521	123	C2A_SLP C2 domain first repeat present in Synaptot	99.83
cd04040	115	C2D_Tricalbin-like C2 domain fourth repeat present	99.82
cd08676	153	C2A_Munc13-like C2 domain first repeat in Munc13 (	99.82
cd04013	146	C2_SynGAP_like C2 domain present in Ras GTPase act	99.82
cd04021	125	C2_E3_ubiquitin_ligase C2 domain present in E3 ubi	99.81
cd08675	137	C2B_RasGAP C2 domain second repeat of Ras GTPase a	99.8
cd04009	133	C2B_Munc13-like C2 domain second repeat in Munc13	99.8
cd08383	117	C2A_RasGAP C2 domain (first repeat) of Ras GTPase	99.8
cd08691	137	C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li	99.8
cd08384	133	C2B_Rabphilin_Doc2 C2 domain second repeat present	99.8
cd04037	124	C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli	99.8
cd04048	120	C2A_Copine C2 domain first repeat in Copine. There	99.79
cd08404	136	C2B_Synaptotagmin-4 C2 domain second repeat presen	99.79
cd08406	136	C2B_Synaptotagmin-12 C2 domain second repeat prese	99.78
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.78
cd04026	131	C2_PKC_alpha_gamma C2 domain in Protein Kinase C (	99.78
KOG1028	421	consensus Ca2+-dependent phospholipid-binding prot	99.78
cd08692	135	C2B_Tac2-N C2 domain second repeat found in Tac2-N	99.78
cd08407	138	C2B_Synaptotagmin-13 C2 domain second repeat prese	99.78
cd00276	134	C2B_Synaptotagmin C2 domain second repeat present	99.77
PLN03008	868	Phospholipase D delta	99.77
cd04035	123	C2A_Rabphilin_Doc2 C2 domain first repeat present	99.77
cd08402	136	C2B_Synaptotagmin-1 C2 domain second repeat presen	99.77
cd08405	136	C2B_Synaptotagmin-7 C2 domain second repeat presen	99.77
cd08408	138	C2B_Synaptotagmin-14_16 C2 domain second repeat pr	99.76
KOG0696	683	consensus Serine/threonine protein kinase [Signal	99.75
cd08410	135	C2B_Synaptotagmin-17 C2 domain second repeat prese	99.75
cd00275	128	C2_PLC_like C2 domain present in Phosphoinositide-	99.75
cd08409	137	C2B_Synaptotagmin-15 C2 domain second repeat prese	99.75
cd08403	134	C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe	99.75
cd08686	118	C2_ABR C2 domain in the Active BCR (Breakpoint clu	99.73
cd04047	110	C2B_Copine C2 domain second repeat in Copine. Ther	99.72
PF00168	85	C2: C2 domain; InterPro: IPR000008 The C2 domain i	99.68
KOG2059	800	consensus Ras GTPase-activating protein [Signal tr	99.63
cd08374	133	C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli	99.61
KOG1011	1283	consensus Neurotransmitter release regulator, UNC-	99.6
cd00030	102	C2 C2 domain. The C2 domain was first identified i	99.6
smart00239	101	C2 Protein kinase C conserved region 2 (CalB). Ca2	99.59
PLN02223	537	phosphoinositide phospholipase C	99.51
COG5038	1227	Ca2+-dependent lipid-binding protein, contains C2	99.48
COG5038	1227	Ca2+-dependent lipid-binding protein, contains C2	99.46
KOG1028	421	consensus Ca2+-dependent phospholipid-binding prot	99.44
PLN02270	808	phospholipase D alpha	99.44
PLN02952	599	phosphoinositide phospholipase C	99.39
KOG0169	746	consensus Phosphoinositide-specific phospholipase	99.38
PLN02230	598	phosphoinositide phospholipase C 4	99.35
PLN02222	581	phosphoinositide phospholipase C 2	99.32
PLN02228	567	Phosphoinositide phospholipase C	99.3
cd08689	109	C2_fungal_Pkc1p C2 domain found in protein kinase	99.3
KOG1031	1169	consensus Predicted Ca2+-dependent phospholipid-bi	99.21
KOG1264	1267	consensus Phospholipase C [Lipid transport and met	99.1
KOG1328	1103	consensus Synaptic vesicle protein BAIAP3, involve	99.09
PLN02352	758	phospholipase D epsilon	98.89
KOG1328	1103	consensus Synaptic vesicle protein BAIAP3, involve	98.87
KOG0905	1639	consensus Phosphoinositide 3-kinase [Signal transd	98.83
KOG1011	1283	consensus Neurotransmitter release regulator, UNC-	98.83
KOG1326	1105	consensus Membrane-associated protein FER-1 and re	98.79
KOG2059	800	consensus Ras GTPase-activating protein [Signal tr	98.78
KOG1013	362	consensus Synaptic vesicle protein rabphilin-3A [I	98.4
KOG3837	523	consensus Uncharacterized conserved protein, conta	98.36
PLN02964	644	phosphatidylserine decarboxylase	98.33
cd08683	143	C2_C2cd3 C2 domain found in C2 calcium-dependent d	98.12
cd08684	103	C2A_Tac2-N C2 domain first repeat found in Tac2-N	98.03
KOG1326	1105	consensus Membrane-associated protein FER-1 and re	98.01
KOG1013	362	consensus Synaptic vesicle protein rabphilin-3A [I	98.01
KOG2060	405	consensus Rab3 effector RIM1 and related proteins,	97.98
KOG1327	529	consensus Copine [Signal transduction mechanisms]	97.83
PF15627	156	CEP76-C2: CEP76 C2 domain	97.74
cd08398	158	C2_PI3K_class_I_alpha C2 domain present in class I	97.48
cd08693	173	C2_PI3K_class_I_beta_delta C2 domain present in cl	97.48
cd08380	156	C2_PI3K_like C2 domain present in phosphatidylinos	97.42
cd08397	159	C2_PI3K_class_III C2 domain present in class III p	97.36
KOG1265	1189	consensus Phospholipase C [Lipid transport and met	97.17
PF10358	143	NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins;	97.07
cd04012	171	C2A_PI3K_class_II C2 domain first repeat present i	97.04
PF12416	340	DUF3668: Cep120 protein; InterPro: IPR022136 This	97.02
cd08399	178	C2_PI3K_class_I_gamma C2 domain present in class I	96.81
PF07162	168	B9-C2: Ciliary basal body-associated, B9 protein;	96.79
KOG1452	442	consensus Predicted Rho GTPase-activating protein	96.77
cd08687	98	C2_PKN-like C2 domain in Protein kinase C-like (PK	96.62
PF00792	142	PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I	96.22
KOG1327	529	consensus Copine [Signal transduction mechanisms]	95.92
PF15625	168	CC2D2AN-C2: CC2D2A N-terminal C2 domain	95.63
cd08695	189	C2_Dock-B C2 domains found in Dedicator Of CytoKin	95.38
smart00142	100	PI3K_C2 Phosphoinositide 3-kinase, region postulat	95.29
cd08694	196	C2_Dock-A C2 domains found in Dedicator Of CytoKin	94.66
PF14429	184	DOCK-C2: C2 domain in Dock180 and Zizimin proteins	94.44
PF11618	107	DUF3250: Protein of unknown function (DUF3250); In	94.36
cd08679	178	C2_DOCK180_related C2 domains found in Dedicator O	92.26
cd08696	179	C2_Dock-C C2 domains found in Dedicator Of CytoKin	90.42
cd08697	185	C2_Dock-D C2 domains found in Dedicator Of CytoKin	89.58
PTZ00447	508	apical membrane antigen 1-like protein; Provisiona	87.05

>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]

Probab=100.00  E-value=8.6e-34  Score=190.27  Aligned_cols=163  Identities=43%  Similarity=0.718  Sum_probs=151.1

Q ss_pred             CCCcceEEEEEEEEeecCCCCC-CCCCCcEEEEEECCEEEEeeeeeCCCCCeEeceEEEEeeCCCceEEEEEEEcCCCCC
Q 031185            1 MRQPFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEPVGVLSLEVFDKDRFKA   79 (164)
Q Consensus         1 ~~~~~~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~L~v~v~d~~~~~~   79 (164)
                      |..+.|.|+|.|.+|.+|..+| .+++||||++.+++++.+|+++.++.||.|||.|.|.+..+...|++.|||+|.++.
T Consensus         1 m~~~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~~~~lkv~VyD~D~fs~   80 (168)
T KOG1030|consen    1 MEMLVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDPNTPLKVTVYDKDTFSS   80 (168)
T ss_pred             CCccceEEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCCCceEEEEEEeCCCCCc
Confidence            5678999999999999999999 599999999999999999999999999999999999999998899999999999999


Q ss_pred             CCeeEEEEEeCcccccceeeeEEE-EecCCceeeEEEeeCCCceeeccceEEEECCEEEeeeeEEEceeeeeeEEEEEEE
Q 031185           80 DDKMGKAYLNLQPIISAARLRHLV-HVSSGETPLRKIIPDSENCLARESSIICINGEVVQNVWLRLCEVESGEIELKVKI  158 (164)
Q Consensus        80 d~~lG~~~i~l~~l~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~G~v~~~l~~  158 (164)
                      |||+|.++|++..+........+. .+.. ......+.++.++++..++.+.+..|++.++.++++++.++|+++..++|
T Consensus        81 dD~mG~A~I~l~p~~~~~~~~~l~~~~~~-gt~~~~v~~s~dn~~~~es~i~~s~~~~~q~~~l~l~~ve~g~~e~~~~~  159 (168)
T KOG1030|consen   81 DDFMGEATIPLKPLLEAQKMDYLKLELLT-GTAIGKVLLSRDNCLNEESAIIRSFGKIVQDYILRLQNVECGELEIQLEW  159 (168)
T ss_pred             ccccceeeeccHHHHHHhhhhccccccCC-CcEeeEEEeccccccccceEEEecCChhhhhhccchhhcCcceeeeeeeE
Confidence            999999999999999987776521 3333 47788899999999999999999999999999999999999999999999


Q ss_pred             EeCCCC
Q 031185          159 VDAPSR  164 (164)
Q Consensus       159 ~~~~~~  164 (164)
                      ++.|++
T Consensus       160 ~~~~~~  165 (168)
T KOG1030|consen  160 IKLPGS  165 (168)
T ss_pred             ecCccc
Confidence            999874

>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP)

Probab=99.97  E-value=1e-29  Score=171.59  Aligned_cols=145  Identities=55%  Similarity=0.913  Sum_probs=131.6

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCcEEEEEECCEEEEeeeeeCCCCCeEeceEEEEeeCCCceEEEEEEEcCCCCCCCeeE
Q 031185            5 FGQLKVTVVQGKRLVIRDFKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEPVGVLSLEVFDKDRFKADDKMG   84 (164)
Q Consensus         5 ~~~L~v~i~~a~~L~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~L~v~v~d~~~~~~d~~lG   84 (164)
                      .|.|.|+|++|++|+..+.+.+||||+++++++..+|++++++.||.|+|+|.|.+..+...|.++|||++.+++|++||
T Consensus         1 ~G~L~V~Vi~a~nL~~~d~~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~~~~l~~~V~D~d~~~~dd~iG   80 (145)
T cd04038           1 LGLLKVRVVRGTNLAVRDFTSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNPMAPLKLEVFDKDTFSKDDSMG   80 (145)
T ss_pred             CeEEEEEEEeeECCCCCCCCCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCCCCEEEEEEEECCCCCCCCEEE
Confidence            48899999999999887767899999999999999999999999999999999999888779999999999999999999


Q ss_pred             EEEEeCcccccceeeeEEEEecCCceeeEEEeeCCCceeeccceEEEECCEEEeeeeEEEceeeee
Q 031185           85 KAYLNLQPIISAARLRHLVHVSSGETPLRKIIPDSENCLARESSIICINGEVVQNVWLRLCEVESG  150 (164)
Q Consensus        85 ~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~G  150 (164)
                      ++.+++.++......... .-..+++.+..+.|+.+++++++|.+++.+||+.++++++|+++++|
T Consensus        81 ~a~i~l~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~l~~~~~g  145 (145)
T cd04038          81 EAEIDLEPLVEAAKLDHL-RDTPGGTQIKKVLPSVENCLASESHITWKDGKIVQDLVLKLRNVESG  145 (145)
T ss_pred             EEEEEHHHhhhhhhhhcc-ccCCCCEEEEEEecCCCceEeccceEEEECCEEEEEEEEEecccccC
Confidence            999999999887666522 22344588999999999999999999999999999999999999987

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i

>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip)

Probab=99.94  E-value=1.2e-25  Score=147.29  Aligned_cols=102  Identities=25%  Similarity=0.482  Sum_probs=87.7

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCcEEEEEECCEEEEeeeeeC-CCCCeEeceEEEEeeCCCceEEEEEEEcCCCCCCCee
Q 031185            5 FGQLKVTVVQGKRLVIRDFKSSDPYVVLKLGNQMAKTKVINS-CLNPVWNEEHSLSLTEPVGVLSLEVFDKDRFKADDKM   83 (164)
Q Consensus         5 ~~~L~v~i~~a~~L~~~~~~~~dpyv~v~~~~~~~~T~~~~~-t~~P~w~e~~~f~~~~~~~~L~v~v~d~~~~~~d~~l   83 (164)
                      .|.|.|+|++|++++..+.|.+||||++.+++++++|++..+ +.||.|||+|.|.+......|.|+|||++.+++|++|
T Consensus         1 ~g~L~v~v~~Ak~l~~~~~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~~~~l~~~V~d~d~~~~dd~i   80 (121)
T cd04016           1 VGRLSITVVQAKLVKNYGLTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEGVDSIYIEIFDERAFTMDERI   80 (121)
T ss_pred             CcEEEEEEEEccCCCcCCCCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCCCcEEEEEEEeCCCCcCCceE
Confidence            479999999999987666789999999999999999999876 7999999999999987666899999999999999999


Q ss_pred             EEEEEeCc-ccccceeeeEEEEec
Q 031185           84 GKAYLNLQ-PIISAARLRHLVHVS  106 (164)
Q Consensus        84 G~~~i~l~-~l~~~~~~~~~~~l~  106 (164)
                      |.+.+++. .+..+...+.|++|.
T Consensus        81 G~~~i~l~~~~~~g~~~~~W~~L~  104 (121)
T cd04016          81 AWTHITIPESVFNGETLDDWYSLS  104 (121)
T ss_pred             EEEEEECchhccCCCCccccEeCc
Confidence            99999996 455554455555554

Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian

>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I

Probab=99.93  E-value=1.2e-24  Score=144.13  Aligned_cols=99  Identities=26%  Similarity=0.460  Sum_probs=86.9

Q ss_pred             EEEEEEEeecCCCCC-CCCCCcEEEEEECCEEEEeeeeeCCCCCeEeceEEEEeeC------CCceEEEEEEEcCCCCCC
Q 031185            8 LKVTVVQGKRLVIRD-FKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTE------PVGVLSLEVFDKDRFKAD   80 (164)
Q Consensus         8 L~v~i~~a~~L~~~~-~~~~dpyv~v~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~------~~~~L~v~v~d~~~~~~d   80 (164)
                      |+|+|++|+||+..+ .+.+||||++.+++.+++|++++++.||.|||+|.|.+..      ....|.++|||++.+++|
T Consensus         1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~d   80 (126)
T cd08682           1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGLD   80 (126)
T ss_pred             CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCCC
Confidence            579999999999988 8899999999999999999999999999999999999876      245899999999999889


Q ss_pred             CeeEEEEEeCcccc--cceeeeEEEEec
Q 031185           81 DKMGKAYLNLQPII--SAARLRHLVHVS  106 (164)
Q Consensus        81 ~~lG~~~i~l~~l~--~~~~~~~~~~l~  106 (164)
                      ++||++.+++.++.  .+.....|++|.
T Consensus        81 ~~iG~~~i~l~~l~~~~~~~~~~W~~L~  108 (126)
T cd08682          81 KFLGQVSIPLNDLDEDKGRRRTRWFKLE  108 (126)
T ss_pred             ceeEEEEEEHHHhhccCCCcccEEEECc
Confidence            99999999999987  344445566654

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member

>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.93  E-value=3.2e-24  Score=141.16  Aligned_cols=102  Identities=34%  Similarity=0.555  Sum_probs=91.7

Q ss_pred             EEEEEEEEeecCCCCC-CCCCCcEEEEEECC-EEEEeeeeeCCCCCeEeceEEEEeeCCCceEEEEEEEcCCCCCCCeeE
Q 031185            7 QLKVTVVQGKRLVIRD-FKSSDPYVVLKLGN-QMAKTKVINSCLNPVWNEEHSLSLTEPVGVLSLEVFDKDRFKADDKMG   84 (164)
Q Consensus         7 ~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~~-~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~L~v~v~d~~~~~~d~~lG   84 (164)
                      +|+|+|++|++|+..+ .+.+||||++.+++ ..++|+++.++.||.|||+|.|.+......|.++|||++..++|++||
T Consensus         1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~D~d~~~~~~~iG   80 (121)
T cd04042           1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQPLYIKVFDYDRGLTDDFMG   80 (121)
T ss_pred             CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCCCCeEEEEEEeCCCCCCCcceE
Confidence            4899999999999988 88999999999977 568999999999999999999998876679999999999998999999


Q ss_pred             EEEEeCcccccceeeeEEEEecCC
Q 031185           85 KAYLNLQPIISAARLRHLVHVSSG  108 (164)
Q Consensus        85 ~~~i~l~~l~~~~~~~~~~~l~~~  108 (164)
                      .+.+++.++..+...+.|++|...
T Consensus        81 ~~~~~l~~l~~~~~~~~~~~L~~~  104 (121)
T cd04042          81 SAFVDLSTLELNKPTEVKLKLEDP  104 (121)
T ss_pred             EEEEEHHHcCCCCCeEEEEECCCC
Confidence            999999999888777777777543

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein

>cd08375 C2_Intersectin C2 domain present in Intersectin

Probab=99.92  E-value=1.8e-23  Score=140.09  Aligned_cols=122  Identities=33%  Similarity=0.559  Sum_probs=103.1

Q ss_pred             CcceEEEEEEEEeecCCCCC-CCCCCcEEEEEECCEEEEeeeeeCCCCCeEeceEEEEeeCCC-ceEEEEEEEcCCCCCC
Q 031185            3 QPFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEPV-GVLSLEVFDKDRFKAD   80 (164)
Q Consensus         3 ~~~~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~-~~L~v~v~d~~~~~~d   80 (164)
                      ...|.|.|+|++|++|+..+ .+.+||||++.+++..++|++++++.||.|||+|.|.+.... ..|.++|||++.+++|
T Consensus        12 ~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~~~d   91 (136)
T cd08375          12 SGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFFSPD   91 (136)
T ss_pred             CCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCCCCCC
Confidence            46799999999999999988 889999999999999999999999999999999999997644 4899999999999899


Q ss_pred             CeeEEEEEeCcccccceeeeEEEEecCCceeeEEEeeCCCceeeccceEEEECCEEEeeeeEEEceeeeeeEEEEEEE
Q 031185           81 DKMGKAYLNLQPIISAARLRHLVHVSSGETPLRKIIPDSENCLARESSIICINGEVVQNVWLRLCEVESGEIELKVKI  158 (164)
Q Consensus        81 ~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~G~v~~~l~~  158 (164)
                      ++||++.+++.++.......      .+                            ....|+.++++..|+|++++.+
T Consensus        92 ~~lG~~~i~l~~l~~~~~~~------~~----------------------------~~~~~~~~~~~~~g~i~l~~~~  135 (136)
T cd08375          92 DFLGRTEIRVADILKETKES------KG----------------------------PITKRLLLHEVPTGEVVVKLDL  135 (136)
T ss_pred             CeeEEEEEEHHHhccccccC------CC----------------------------cEEEEeccccccceeEEEEEEe
Confidence            99999999999886632110      00                            1234566778889999999875

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro

>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.92  E-value=2.1e-23  Score=136.26  Aligned_cols=99  Identities=33%  Similarity=0.525  Sum_probs=86.9

Q ss_pred             EEEEEEEEeecCCCCC-CCCCCcEEEEEECCEEEEeeeeeCCCCCeEeceEEEEeeCC-CceEEEEEEEcCCCCCCCeeE
Q 031185            7 QLKVTVVQGKRLVIRD-FKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEP-VGVLSLEVFDKDRFKADDKMG   84 (164)
Q Consensus         7 ~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~-~~~L~v~v~d~~~~~~d~~lG   84 (164)
                      +|+|+|++|++|+..+ .+.+||||++++++..++|++++++.||.|+|+|.|.+... ...|.++|||++.++++++||
T Consensus         1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~~iG   80 (116)
T cd08376           1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDEFIG   80 (116)
T ss_pred             CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCCeEE
Confidence            4789999999999998 88999999999999999999999999999999999998775 459999999999998999999


Q ss_pred             EEEEeCcccccceeeeEEEEe
Q 031185           85 KAYLNLQPIISAARLRHLVHV  105 (164)
Q Consensus        85 ~~~i~l~~l~~~~~~~~~~~l  105 (164)
                      ++.++++++..+...+.|++|
T Consensus        81 ~~~~~l~~l~~~~~~~~w~~L  101 (116)
T cd08376          81 RCEIDLSALPREQTHSLELEL  101 (116)
T ss_pred             EEEEeHHHCCCCCceEEEEEc
Confidence            999999987665544444333

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei

>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.91  E-value=1.7e-23  Score=137.88  Aligned_cols=101  Identities=28%  Similarity=0.458  Sum_probs=91.1

Q ss_pred             EEEEEEEEeec---CCCCC-CCCCCcEEEEEECCEEEEeeeeeCCCCCeEeceEEEEeeCCCceEEEEEEEcCCCC----
Q 031185            7 QLKVTVVQGKR---LVIRD-FKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEPVGVLSLEVFDKDRFK----   78 (164)
Q Consensus         7 ~L~v~i~~a~~---L~~~~-~~~~dpyv~v~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~L~v~v~d~~~~~----   78 (164)
                      .|+|+|++|++   |+..+ .|.+||||.+++++++.+|++++++.||.|||+|.|.+......|.++|||++.++    
T Consensus         1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~~~~l~v~V~d~d~~~~~~~   80 (126)
T cd08379           1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDPCTVLTVGVFDNSQSHWKEA   80 (126)
T ss_pred             CeEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCCCCEEEEEEEECCCcccccc
Confidence            38999999999   78778 89999999999999999999999999999999999999876679999999999873    


Q ss_pred             --CCCeeEEEEEeCcccccceeeeEEEEecC
Q 031185           79 --ADDKMGKAYLNLQPIISAARLRHLVHVSS  107 (164)
Q Consensus        79 --~d~~lG~~~i~l~~l~~~~~~~~~~~l~~  107 (164)
                        +|++||++.+++..+..+...+.|++|..
T Consensus        81 ~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~  111 (126)
T cd08379          81 VQPDVLIGKVRIRLSTLEDDRVYAHSYPLLS  111 (126)
T ss_pred             CCCCceEEEEEEEHHHccCCCEEeeEEEeEe
Confidence              89999999999999988877777777753

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins

Probab=99.91  E-value=1.7e-23  Score=137.17  Aligned_cols=100  Identities=30%  Similarity=0.542  Sum_probs=86.1

Q ss_pred             eEEEEEEEEeecCCCCC-CCCCCcEEEEEECCEEEEeeeeeC-CCCCeEeceEEEEeeCCC-ceEEEEEEEcCCCCCCCe
Q 031185            6 GQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGNQMAKTKVINS-CLNPVWNEEHSLSLTEPV-GVLSLEVFDKDRFKADDK   82 (164)
Q Consensus         6 ~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~~~~~~T~~~~~-t~~P~w~e~~~f~~~~~~-~~L~v~v~d~~~~~~d~~   82 (164)
                      |.|.|+|++|++|+..+ .+.+||||++.+++...+|+++.+ +.||.|||.|.|.+.... ..|.++|||++..+ |++
T Consensus         1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~-~~~   79 (118)
T cd08681           1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRK-PDL   79 (118)
T ss_pred             CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCC-Ccc
Confidence            68999999999999988 889999999999998899998755 789999999999998743 48999999999875 899


Q ss_pred             eEEEEEeCcccccceeeeEEEEec
Q 031185           83 MGKAYLNLQPIISAARLRHLVHVS  106 (164)
Q Consensus        83 lG~~~i~l~~l~~~~~~~~~~~l~  106 (164)
                      ||++.+++.++..+.....|+.|.
T Consensus        80 iG~~~~~l~~~~~~~~~~~w~~L~  103 (118)
T cd08681          80 IGDTEVDLSPALKEGEFDDWYELT  103 (118)
T ss_pred             eEEEEEecHHHhhcCCCCCcEEec
Confidence            999999999887665445555543

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr

>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.91  E-value=2e-23  Score=138.55  Aligned_cols=100  Identities=26%  Similarity=0.420  Sum_probs=85.9

Q ss_pred             EEEEEEEEeecCCCCC-CCCCCcEEEEEECCEEEEeeeeeCCCCCeEeceEEEEeeCCC----ceEEEEEEEcCCCC-CC
Q 031185            7 QLKVTVVQGKRLVIRD-FKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEPV----GVLSLEVFDKDRFK-AD   80 (164)
Q Consensus         7 ~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~----~~L~v~v~d~~~~~-~d   80 (164)
                      .|.|+|++|++|+..+ .+.+||||++.++++.++|+++.++.||.|||.|.|.+....    ..|.++|||.+.++ ++
T Consensus         1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d   80 (127)
T cd04022           1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRR   80 (127)
T ss_pred             CeEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCC
Confidence            4899999999999988 788999999999999999999999999999999999987532    37999999999886 79


Q ss_pred             CeeEEEEEeCcccc-cceeeeEEEEec
Q 031185           81 DKMGKAYLNLQPII-SAARLRHLVHVS  106 (164)
Q Consensus        81 ~~lG~~~i~l~~l~-~~~~~~~~~~l~  106 (164)
                      ++||++.+++.++. .+.....|+.|.
T Consensus        81 ~~lG~v~i~l~~l~~~~~~~~~w~~L~  107 (127)
T cd04022          81 SFLGRVRISGTSFVPPSEAVVQRYPLE  107 (127)
T ss_pred             CeeeEEEEcHHHcCCCCCccceEeEee
Confidence            99999999999887 344444555554

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins

Probab=99.91  E-value=2.7e-23  Score=136.58  Aligned_cols=113  Identities=37%  Similarity=0.640  Sum_probs=98.3

Q ss_pred             eEEEEEEEEeecCCCCC-C------CCCCcEEEEEECCEEEEeeeeeCCCCCeEeceEEEEeeCC-CceEEEEEEEcCCC
Q 031185            6 GQLKVTVVQGKRLVIRD-F------KSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEP-VGVLSLEVFDKDRF   77 (164)
Q Consensus         6 ~~L~v~i~~a~~L~~~~-~------~~~dpyv~v~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~-~~~L~v~v~d~~~~   77 (164)
                      |.|+|+|++|++|+..+ .      +.+||||++++++..++|++++++.+|.|+|+|.|.+... ...|.++|||++..
T Consensus         1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~~   80 (121)
T cd08391           1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDPD   80 (121)
T ss_pred             CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCCC
Confidence            67999999999999876 2      5789999999999999999999999999999999998753 45999999999988


Q ss_pred             CCCCeeEEEEEeCcccccceeeeEEEEecCCceeeEEEeeCCCceeeccceEEEECCEEEeeeeEEEceeeeeeEEEEEE
Q 031185           78 KADDKMGKAYLNLQPIISAARLRHLVHVSSGETPLRKIIPDSENCLARESSIICINGEVVQNVWLRLCEVESGEIELKVK  157 (164)
Q Consensus        78 ~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~G~v~~~l~  157 (164)
                       ++++||.+.+++.++..+..                                       .+.|++|.+...|+|+++++
T Consensus        81 -~~~~iG~~~i~l~~l~~~~~---------------------------------------~~~w~~L~~~~~G~~~~~~~  120 (121)
T cd08391          81 -KDDFLGRLSIDLGSVEKKGF---------------------------------------IDEWLPLEDVKSGRLHLKLE  120 (121)
T ss_pred             -CCCcEEEEEEEHHHhcccCc---------------------------------------cceEEECcCCCCceEEEEEe
Confidence             89999999999998765422                                       24577877778899999999


Q ss_pred             E
Q 031185          158 I  158 (164)
Q Consensus       158 ~  158 (164)
                      |
T Consensus       121 ~  121 (121)
T cd08391         121 W  121 (121)
T ss_pred             C
Confidence            8

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular

>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein

Probab=99.91  E-value=6e-23  Score=136.04  Aligned_cols=121  Identities=21%  Similarity=0.329  Sum_probs=101.7

Q ss_pred             EEEEEEEeecCCCCCCCCCCcEEEEEEC--CEEEEeeeeeCCCCCeEeceEEEEeeCCCceEEEEEEEcCCCCCCCeeEE
Q 031185            8 LKVTVVQGKRLVIRDFKSSDPYVVLKLG--NQMAKTKVINSCLNPVWNEEHSLSLTEPVGVLSLEVFDKDRFKADDKMGK   85 (164)
Q Consensus         8 L~v~i~~a~~L~~~~~~~~dpyv~v~~~--~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~L~v~v~d~~~~~~d~~lG~   85 (164)
                      |.|+|++|++|+. ..+.+||||+++++  ...++|+++.++.||.|+|.|.|.+......|.++|||++..++|++||+
T Consensus         1 l~v~v~~A~~L~~-~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~~~~~lG~   79 (126)
T cd08678           1 LLVKNIKANGLSE-AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNSKELLFEVYDNGKKSDSKFLGL   79 (126)
T ss_pred             CEEEEEEecCCCC-CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCCCCEEEEEEEECCCCCCCceEEE
Confidence            5799999999987 66789999999997  35689999999999999999999997666699999999999988999999


Q ss_pred             EEEeCcccccceeeeEEEEecCCceeeEEEeeCCCceeeccceEEEECCEEEeeeeEEEceeeeeeEEEEEEEEeCC
Q 031185           86 AYLNLQPIISAARLRHLVHVSSGETPLRKIIPDSENCLARESSIICINGEVVQNVWLRLCEVESGEIELKVKIVDAP  162 (164)
Q Consensus        86 ~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~G~v~~~l~~~~~~  162 (164)
                      +.+++.++........|+.|....                                . ......|+|++++.|++.+
T Consensus        80 ~~i~l~~l~~~~~~~~~~~L~~~~--------------------------------~-~~~~~~G~l~l~~~~~~~~  123 (126)
T cd08678          80 AIVPFDELRKNPSGRQIFPLQGRP--------------------------------Y-EGDSVSGSITVEFLFMEPA  123 (126)
T ss_pred             EEEeHHHhccCCceeEEEEecCCC--------------------------------C-CCCCcceEEEEEEEEeccc
Confidence            999999998877666676665330                                0 0134589999999998764

The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a

>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins

Probab=99.91  E-value=3.4e-23  Score=136.69  Aligned_cols=95  Identities=31%  Similarity=0.499  Sum_probs=84.7

Q ss_pred             ceEEEEEEEEeecCCCCC--CCCCCcEEEEEECC--EEEEeeeeeCCCCCeEeceEEEEeeCCCceEEEEEEEcCCCCCC
Q 031185            5 FGQLKVTVVQGKRLVIRD--FKSSDPYVVLKLGN--QMAKTKVINSCLNPVWNEEHSLSLTEPVGVLSLEVFDKDRFKAD   80 (164)
Q Consensus         5 ~~~L~v~i~~a~~L~~~~--~~~~dpyv~v~~~~--~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~L~v~v~d~~~~~~d   80 (164)
                      .|.|.|+|++|++|+..+  .+.+||||.+.+++  ..++|+++.++.+|.|||.|.|.+......|.++|||++..++|
T Consensus         1 ~g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~~~~~l~~~v~d~~~~~~d   80 (124)
T cd04044           1 IGVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNSLTEPLNLTVYDFNDKRKD   80 (124)
T ss_pred             CeEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCCCCCEEEEEEEecCCCCCC
Confidence            488999999999999765  46789999999977  77999999999999999999999886567999999999998899


Q ss_pred             CeeEEEEEeCcccccceee
Q 031185           81 DKMGKAYLNLQPIISAARL   99 (164)
Q Consensus        81 ~~lG~~~i~l~~l~~~~~~   99 (164)
                      ++||.+.+++.++......
T Consensus        81 ~~iG~~~~~l~~l~~~~~~   99 (124)
T cd04044          81 KLIGTAEFDLSSLLQNPEQ   99 (124)
T ss_pred             ceeEEEEEEHHHhccCccc
Confidence            9999999999998776543

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3

Probab=99.91  E-value=8.3e-23  Score=134.33  Aligned_cols=99  Identities=21%  Similarity=0.363  Sum_probs=86.3

Q ss_pred             EEEEEEEeecCCCCC--CCCCCcEEEEEECCE-EEEeeeeeCCCCCeEeceEEEEeeCCCceEEEEEEEcCCCCCCCeeE
Q 031185            8 LKVTVVQGKRLVIRD--FKSSDPYVVLKLGNQ-MAKTKVINSCLNPVWNEEHSLSLTEPVGVLSLEVFDKDRFKADDKMG   84 (164)
Q Consensus         8 L~v~i~~a~~L~~~~--~~~~dpyv~v~~~~~-~~~T~~~~~t~~P~w~e~~~f~~~~~~~~L~v~v~d~~~~~~d~~lG   84 (164)
                      |.|.|++|+||+..+  .+.+||||.+.+++. ..+|+++++|.+|.|||+|.|.+......|.+.|||++.+++|++||
T Consensus         2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~~~~l~~~v~d~~~~~~~~~iG   81 (121)
T cd08401           2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRTFRHLSFYIYDRDVLRRDSVIG   81 (121)
T ss_pred             eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCCCCEEEEEEEECCCCCCCceEE
Confidence            689999999999874  578999999999765 58999999999999999999999876679999999999999999999


Q ss_pred             EEEEeCcccccceeeeEEEEec
Q 031185           85 KAYLNLQPIISAARLRHLVHVS  106 (164)
Q Consensus        85 ~~~i~l~~l~~~~~~~~~~~l~  106 (164)
                      .+.++++++..+...+.|++|.
T Consensus        82 ~~~i~l~~l~~~~~~~~w~~L~  103 (121)
T cd08401          82 KVAIKKEDLHKYYGKDTWFPLQ  103 (121)
T ss_pred             EEEEEHHHccCCCCcEeeEEEE
Confidence            9999999887765555565554

RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p

>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.90  E-value=1.5e-22  Score=134.41  Aligned_cols=90  Identities=37%  Similarity=0.601  Sum_probs=82.1

Q ss_pred             eEEEEEEEEeecCCCCC---CCCCCcEEEEEECCEEEEeeeeeCCCCCeEeceEEEEeeC-CCceEEEEEEEcCCCCCCC
Q 031185            6 GQLKVTVVQGKRLVIRD---FKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTE-PVGVLSLEVFDKDRFKADD   81 (164)
Q Consensus         6 ~~L~v~i~~a~~L~~~~---~~~~dpyv~v~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~-~~~~L~v~v~d~~~~~~d~   81 (164)
                      |.|.|+|++|++|+..+   .+.+||||.+.+++..++|++++++.+|.|+|+|.|.+.. ....|.++|||++..++++
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~~~~   80 (128)
T cd04024           1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFAGKD   80 (128)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCCCCC
Confidence            68999999999998776   3689999999999999999999999999999999999986 3469999999999988899


Q ss_pred             eeEEEEEeCccccc
Q 031185           82 KMGKAYLNLQPIIS   95 (164)
Q Consensus        82 ~lG~~~i~l~~l~~   95 (164)
                      +||++.+++.++..
T Consensus        81 ~lG~~~i~l~~~~~   94 (128)
T cd04024          81 YLGEFDIALEEVFA   94 (128)
T ss_pred             cceEEEEEHHHhhc
Confidence            99999999999873

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu

>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.90  E-value=2.4e-22  Score=136.58  Aligned_cols=101  Identities=30%  Similarity=0.420  Sum_probs=86.9

Q ss_pred             EEEEEEEEeecCCCCC-CCCCCcEEEEEECCEEEEeeeeeC-CCCCeEeceEEEEeeCCC-ceEEEEEEEcCCCCCCCee
Q 031185            7 QLKVTVVQGKRLVIRD-FKSSDPYVVLKLGNQMAKTKVINS-CLNPVWNEEHSLSLTEPV-GVLSLEVFDKDRFKADDKM   83 (164)
Q Consensus         7 ~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~~~~~~T~~~~~-t~~P~w~e~~~f~~~~~~-~~L~v~v~d~~~~~~d~~l   83 (164)
                      .|.|+|++|++|+..+ .|.+||||++.++++..+|++..+ +.||.|||.|.|.+..+. ..|.++|||++..+++++|
T Consensus         1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd~l   80 (150)
T cd04019           1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDEPL   80 (150)
T ss_pred             CEEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCCeE
Confidence            3889999999999999 889999999999999999999977 699999999999987643 4899999999988889999


Q ss_pred             EEEEEeCcccccc----eeeeEEEEecC
Q 031185           84 GKAYLNLQPIISA----ARLRHLVHVSS  107 (164)
Q Consensus        84 G~~~i~l~~l~~~----~~~~~~~~l~~  107 (164)
                      |++.++|+++..+    .....|++|..
T Consensus        81 G~v~i~L~~l~~~~~~~~~~~~W~~L~~  108 (150)
T cd04019          81 GRAVIPLNDIERRVDDRPVPSRWFSLER  108 (150)
T ss_pred             EEEEEEHHHCcccCCCCccCCceEECcC
Confidence            9999999998653    22355666653

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.90  E-value=4e-22  Score=130.75  Aligned_cols=99  Identities=31%  Similarity=0.487  Sum_probs=86.9

Q ss_pred             eEEEEEEEEeecCCCCC-CCCCCcEEEEEECCEEEEeeeeeCCCCCeEeceEEEEeeCCCceEEEEEEEcCCCCCCCeeE
Q 031185            6 GQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEPVGVLSLEVFDKDRFKADDKMG   84 (164)
Q Consensus         6 ~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~L~v~v~d~~~~~~d~~lG   84 (164)
                      |.|.|+|++|++|+..+ .+.+||||++++++...+|++++++.||.|+|+|.|.+......|.++|||++..+++++||
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~~~~~l~~~v~d~~~~~~~~~iG   80 (119)
T cd08377           1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDIHDVLEVTVYDEDKDKKPEFLG   80 (119)
T ss_pred             CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecCcCCEEEEEEEECCCCCCCceee
Confidence            68999999999999988 78899999999998889999999999999999999998775679999999999988999999


Q ss_pred             EEEEeCcccccceeeeEEEEec
Q 031185           85 KAYLNLQPIISAARLRHLVHVS  106 (164)
Q Consensus        85 ~~~i~l~~l~~~~~~~~~~~l~  106 (164)
                      ++.+++.++..+.  ..|+.|.
T Consensus        81 ~~~~~l~~~~~~~--~~~~~l~  100 (119)
T cd08377          81 KVAIPLLSIKNGE--RKWYALK  100 (119)
T ss_pred             EEEEEHHHCCCCC--ceEEECc
Confidence            9999999875442  3354443

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran

>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

Probab=99.89  E-value=3.4e-22  Score=133.52  Aligned_cols=91  Identities=36%  Similarity=0.587  Sum_probs=81.8

Q ss_pred             EEEEEEEEeecCCCCC-CCCCCcEEEEEECCE-------EEEeeeeeCCCCCeEeceEEEEeeCCCceEEEEEEEcCCCC
Q 031185            7 QLKVTVVQGKRLVIRD-FKSSDPYVVLKLGNQ-------MAKTKVINSCLNPVWNEEHSLSLTEPVGVLSLEVFDKDRFK   78 (164)
Q Consensus         7 ~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~~~-------~~~T~~~~~t~~P~w~e~~~f~~~~~~~~L~v~v~d~~~~~   78 (164)
                      .|+|+|++|++|+..+ .+.+||||++.+.+.       ..+|++++++.+|.|||+|.|.+......|.++|||++.++
T Consensus         1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~   80 (133)
T cd04033           1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPREHRLLFEVFDENRLT   80 (133)
T ss_pred             CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCCCCEEEEEEEECCCCC
Confidence            3899999999999988 889999999999654       47899999999999999999999876668999999999998


Q ss_pred             CCCeeEEEEEeCcccccce
Q 031185           79 ADDKMGKAYLNLQPIISAA   97 (164)
Q Consensus        79 ~d~~lG~~~i~l~~l~~~~   97 (164)
                      ++++||++.+++.++....
T Consensus        81 ~~~~iG~~~i~l~~l~~~~   99 (133)
T cd04033          81 RDDFLGQVEVPLNNLPTET   99 (133)
T ss_pred             CCCeeEEEEEEHHHCCCcC
Confidence            9999999999999887653

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08677 C2A_Synaptotagmin-13 C2 domain

Probab=99.89  E-value=9.8e-23  Score=131.88  Aligned_cols=99  Identities=22%  Similarity=0.337  Sum_probs=84.4

Q ss_pred             CcceEEEEEEEEeecCCCCCCCCCCcEEEEEECC----EEEEeeeeeCCCCCeEeceEEEEeeCCC---ceEEEEEEEcC
Q 031185            3 QPFGQLKVTVVQGKRLVIRDFKSSDPYVVLKLGN----QMAKTKVINSCLNPVWNEEHSLSLTEPV---GVLSLEVFDKD   75 (164)
Q Consensus         3 ~~~~~L~v~i~~a~~L~~~~~~~~dpyv~v~~~~----~~~~T~~~~~t~~P~w~e~~~f~~~~~~---~~L~v~v~d~~   75 (164)
                      ...+.|+|+|++|++|+ .+ +.+||||++++..    .+++|++.++|.||.|||+|.|.+....   ..|.++|||+|
T Consensus        11 ~~~~~L~V~vikA~~L~-~~-g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~d~D   88 (118)
T cd08677          11 KQKAELHVNILEAENIS-VD-AGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLRCCD   88 (118)
T ss_pred             CcCCEEEEEEEEecCCC-CC-CCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEEeCC
Confidence            45689999999999998 33 5589999999953    4689999999999999999999987543   28999999999


Q ss_pred             CCCCCCeeEEEEEeCcccccceeeeEEE
Q 031185           76 RFKADDKMGKAYLNLQPIISAARLRHLV  103 (164)
Q Consensus        76 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~  103 (164)
                      .++++++||++.++++++......++|.
T Consensus        89 rfs~~d~IG~v~l~l~~~~~~~~~~~W~  116 (118)
T cd08677          89 RFSRHSTLGELRLKLADVSMMLGAAQWV  116 (118)
T ss_pred             CCCCCceEEEEEEccccccCCccccchh
Confidence            9999999999999999886665555553

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain

>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4

Probab=99.89  E-value=5.9e-22  Score=130.72  Aligned_cols=101  Identities=28%  Similarity=0.436  Sum_probs=90.6

Q ss_pred             EEEEEEEEeecCCCCC-CCCCCcEEEEEECCEEEEeeeeeCCCCCeEeceEEEEeeCCC-ceEEEEEEEcCCCCCCCeeE
Q 031185            7 QLKVTVVQGKRLVIRD-FKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEPV-GVLSLEVFDKDRFKADDKMG   84 (164)
Q Consensus         7 ~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~-~~L~v~v~d~~~~~~d~~lG   84 (164)
                      +|+|+|++|++|+..+ .+.+||||.+++++...+|++++++.||.|+|+|.|.+.... ..|.|+|||++.++++++||
T Consensus         1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~~iG   80 (123)
T cd04025           1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKNDFLG   80 (123)
T ss_pred             CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCcEeE
Confidence            4899999999999988 788999999999999999999999999999999999988753 48999999999998999999


Q ss_pred             EEEEeCcccccceeeeEEEEecC
Q 031185           85 KAYLNLQPIISAARLRHLVHVSS  107 (164)
Q Consensus        85 ~~~i~l~~l~~~~~~~~~~~l~~  107 (164)
                      .+.+++.++........|+.|..
T Consensus        81 ~~~~~l~~l~~~~~~~~w~~L~~  103 (123)
T cd04025          81 KVVFSIQTLQQAKQEEGWFRLLP  103 (123)
T ss_pred             EEEEEHHHcccCCCCCCEEECCC
Confidence            99999999987766677777664

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a

>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.89  E-value=3.4e-22  Score=130.68  Aligned_cols=102  Identities=23%  Similarity=0.211  Sum_probs=88.3

Q ss_pred             EEEEEEEEeecCCCCCCCCCCcEEEEEEC-----C--EEEEeeeeeCCCCCeEeceEEEEeeCCC----ceEEEEEEEcC
Q 031185            7 QLKVTVVQGKRLVIRDFKSSDPYVVLKLG-----N--QMAKTKVINSCLNPVWNEEHSLSLTEPV----GVLSLEVFDKD   75 (164)
Q Consensus         7 ~L~v~i~~a~~L~~~~~~~~dpyv~v~~~-----~--~~~~T~~~~~t~~P~w~e~~~f~~~~~~----~~L~v~v~d~~   75 (164)
                      .|+|.|++|++|+..+.|.+||||++++.     .  ++++|+++.++.||.|||+|.|.+....    ..|.+.|||++
T Consensus         1 kL~V~Vi~A~~L~~~d~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d   80 (120)
T cd08395           1 KVTVKVVAANDLKWQTTGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDYC   80 (120)
T ss_pred             CEEEEEEECcCCCcccCCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEec
Confidence            48999999999988777889999999982     2  3468999999999999999999997532    26899999999


Q ss_pred             CCCCCCeeEEEEEeCcccccceeeeEEEEecCC
Q 031185           76 RFKADDKMGKAYLNLQPIISAARLRHLVHVSSG  108 (164)
Q Consensus        76 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~  108 (164)
                      ..+++++||++.+++.++..++....|++|...
T Consensus        81 ~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~~  113 (120)
T cd08395          81 FARDDRLVGVTVLQLRDIAQAGSCACWLPLGRR  113 (120)
T ss_pred             ccCCCCEEEEEEEEHHHCcCCCcEEEEEECcCc
Confidence            888899999999999999999888888888644

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

Probab=99.89  E-value=6.1e-22  Score=129.95  Aligned_cols=91  Identities=31%  Similarity=0.567  Sum_probs=79.9

Q ss_pred             EEEEEEEeecCCCCC-CCCCCcEEEEEEC---CEEEEeeeeeCCCCCeEeceEEEEeeCCC-ceEEEEEEEcCCCCCCCe
Q 031185            8 LKVTVVQGKRLVIRD-FKSSDPYVVLKLG---NQMAKTKVINSCLNPVWNEEHSLSLTEPV-GVLSLEVFDKDRFKADDK   82 (164)
Q Consensus         8 L~v~i~~a~~L~~~~-~~~~dpyv~v~~~---~~~~~T~~~~~t~~P~w~e~~~f~~~~~~-~~L~v~v~d~~~~~~d~~   82 (164)
                      |.|+|++|++|+..+ .+.+||||++.+.   ...++|++++++.||.|||+|.|.+.... ..|.|+|||++.+ +|++
T Consensus         2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~-~~~~   80 (119)
T cd04036           2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYV-MDDH   80 (119)
T ss_pred             eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCC-CCcc
Confidence            789999999999888 7899999999985   35689999999999999999999987653 3799999999998 8999


Q ss_pred             eEEEEEeCcccccceee
Q 031185           83 MGKAYLNLQPIISAARL   99 (164)
Q Consensus        83 lG~~~i~l~~l~~~~~~   99 (164)
                      ||++.+++.++..+...
T Consensus        81 iG~~~~~l~~l~~g~~~   97 (119)
T cd04036          81 LGTVLFDVSKLKLGEKV   97 (119)
T ss_pred             cEEEEEEHHHCCCCCcE
Confidence            99999999987665433

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o

>cd04046 C2_Calpain C2 domain present in Calpain proteins

Probab=99.89  E-value=1.4e-21  Score=129.40  Aligned_cols=90  Identities=22%  Similarity=0.387  Sum_probs=82.4

Q ss_pred             cceEEEEEEEEeecCCCCC-CCCCCcEEEEEECCEEEEeeeeeCCCCCeEeceEEEEeeCCCceEEEEEEEcCCCCCCCe
Q 031185            4 PFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEPVGVLSLEVFDKDRFKADDK   82 (164)
Q Consensus         4 ~~~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~L~v~v~d~~~~~~d~~   82 (164)
                      +..+|+|+|++|++|+..+ .+.+||||++.++++.++|++++++.+|.|||.|.|.+......|.++|||++.. .|++
T Consensus         1 ~~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~i~V~d~~~~-~d~~   79 (126)
T cd04046           1 PQVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKPRSPIKIQVWNSNLL-CDEF   79 (126)
T ss_pred             CcEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCCCCEEEEEEEECCCC-CCCc
Confidence            4578999999999999888 8899999999999999999999999999999999999887767999999999987 5899


Q ss_pred             eEEEEEeCcccc
Q 031185           83 MGKAYLNLQPII   94 (164)
Q Consensus        83 lG~~~i~l~~l~   94 (164)
                      ||.+.+++.++.
T Consensus        80 lG~~~~~l~~~~   91 (126)
T cd04046          80 LGQATLSADPND   91 (126)
T ss_pred             eEEEEEecccCC
Confidence            999999998754

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic

>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=99.88  E-value=5.5e-22  Score=130.62  Aligned_cols=101  Identities=26%  Similarity=0.314  Sum_probs=87.0

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCcEEEEEEC-----CEEEEeeeeeCCCCCeEeceEEEEeeC----CCceEEEEEEEcC
Q 031185            5 FGQLKVTVVQGKRLVIRDFKSSDPYVVLKLG-----NQMAKTKVINSCLNPVWNEEHSLSLTE----PVGVLSLEVFDKD   75 (164)
Q Consensus         5 ~~~L~v~i~~a~~L~~~~~~~~dpyv~v~~~-----~~~~~T~~~~~t~~P~w~e~~~f~~~~----~~~~L~v~v~d~~   75 (164)
                      .+.|.|.|++|++|+..+.+.+||||++++.     ..+++|++++++.||.|||+|.|.+..    ....|.++|||++
T Consensus        12 ~~~L~V~Vi~A~~L~~~~~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~d   91 (122)
T cd08381          12 NGTLFVMVMHAKNLPLLDGSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHD   91 (122)
T ss_pred             CCEEEEEEEEeeCCCCCCCCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeCC
Confidence            4789999999999998876689999999995     346899999999999999999999722    2348999999999


Q ss_pred             CCCCCCeeEEEEEeCcccccceeeeEEEEe
Q 031185           76 RFKADDKMGKAYLNLQPIISAARLRHLVHV  105 (164)
Q Consensus        76 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l  105 (164)
                      .++++++||++.++|.++........|+.|
T Consensus        92 ~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L  121 (122)
T cd08381          92 SLVENEFLGGVCIPLKKLDLSQETEKWYPL  121 (122)
T ss_pred             CCcCCcEEEEEEEeccccccCCCccceEEC
Confidence            998999999999999999877666667655

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut

>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4

Probab=99.88  E-value=1.8e-21  Score=128.09  Aligned_cols=88  Identities=35%  Similarity=0.593  Sum_probs=80.2

Q ss_pred             EEEEEEEeecCCCCC-CCCCCcEEEEEECCEE-EEeeeeeCCCCCeEeceEEEEeeCCCceEEEEEEEcCCCCCCCeeEE
Q 031185            8 LKVTVVQGKRLVIRD-FKSSDPYVVLKLGNQM-AKTKVINSCLNPVWNEEHSLSLTEPVGVLSLEVFDKDRFKADDKMGK   85 (164)
Q Consensus         8 L~v~i~~a~~L~~~~-~~~~dpyv~v~~~~~~-~~T~~~~~t~~P~w~e~~~f~~~~~~~~L~v~v~d~~~~~~d~~lG~   85 (164)
                      |.|+|++|++|+..+ .+.+||||++.+++.. .+|+++.++.||.|||.|.|.+......|.++|||++.+++|++||+
T Consensus         2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~~~~l~v~v~d~~~~~~d~~iG~   81 (121)
T cd04054           2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGFHTVSFYVLDEDTLSRDDVIGK   81 (121)
T ss_pred             EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCCCCEEEEEEEECCCCCCCCEEEE
Confidence            789999999999999 8899999999997754 79999999999999999999987766799999999999999999999


Q ss_pred             EEEeCccccc
Q 031185           86 AYLNLQPIIS   95 (164)
Q Consensus        86 ~~i~l~~l~~   95 (164)
                      +.++++.+..
T Consensus        82 ~~~~~~~~~~   91 (121)
T cd04054          82 VSLTREVISA   91 (121)
T ss_pred             EEEcHHHhcc
Confidence            9999887654

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.

>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD)

Probab=99.88  E-value=1.9e-21  Score=133.34  Aligned_cols=103  Identities=27%  Similarity=0.462  Sum_probs=88.8

Q ss_pred             cceEEEEEEEEeecCCCCC-------------------------------CCCCCcEEEEEECCEE-EEeeeeeCCCCCe
Q 031185            4 PFGQLKVTVVQGKRLVIRD-------------------------------FKSSDPYVVLKLGNQM-AKTKVINSCLNPV   51 (164)
Q Consensus         4 ~~~~L~v~i~~a~~L~~~~-------------------------------~~~~dpyv~v~~~~~~-~~T~~~~~t~~P~   51 (164)
                      ..|.|.|+|.+|++|+.++                               .|.+||||++++++.. .+|+++.++.||.
T Consensus         5 lhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~   84 (158)
T cd04015           5 LHGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPV   84 (158)
T ss_pred             EeeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCc
Confidence            4689999999999999865                               3457999999998755 6999999999999


Q ss_pred             EeceEEEEeeCCCceEEEEEEEcCCCCCCCeeEEEEEeCcccccceeeeEEEEecC
Q 031185           52 WNEEHSLSLTEPVGVLSLEVFDKDRFKADDKMGKAYLNLQPIISAARLRHLVHVSS  107 (164)
Q Consensus        52 w~e~~~f~~~~~~~~L~v~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~  107 (164)
                      |||+|.|.+......|.+.|||++.+ .+++||++.++++++..+...+.|++|..
T Consensus        85 WnE~F~~~~~~~~~~l~~~V~d~d~~-~~~~IG~~~i~l~~l~~g~~~~~w~~L~~  139 (158)
T cd04015          85 WNESFHIYCAHYASHVEFTVKDNDVV-GAQLIGRAYIPVEDLLSGEPVEGWLPILD  139 (158)
T ss_pred             cceEEEEEccCCCCEEEEEEEeCCCc-CCcEEEEEEEEhHHccCCCCcceEEECcC
Confidence            99999999877667999999999988 46899999999999987776677777653

PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic

>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.88  E-value=1.4e-21  Score=131.73  Aligned_cols=103  Identities=23%  Similarity=0.302  Sum_probs=88.1

Q ss_pred             ceEEEEEEEEeecCCCCC--CCCCCcEEEEEEC--C---EEEEeeeeeCCCCCeEeceEEEEeeCCCceEEEEEE-EcCC
Q 031185            5 FGQLKVTVVQGKRLVIRD--FKSSDPYVVLKLG--N---QMAKTKVINSCLNPVWNEEHSLSLTEPVGVLSLEVF-DKDR   76 (164)
Q Consensus         5 ~~~L~v~i~~a~~L~~~~--~~~~dpyv~v~~~--~---~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~L~v~v~-d~~~   76 (164)
                      .+.|.|+|++|+||+..+  .+.+||||++++.  +   .+.+|++++++.||.|||+|.|.+......|.++|| |++.
T Consensus        28 ~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~l~~~~L~v~V~~d~~~  107 (146)
T cd04028          28 KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVSPTGKTLQVIVWGDYGR  107 (146)
T ss_pred             CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEcCCCCEEEEEEEeCCCC
Confidence            478999999999998864  6789999999993  2   368999999999999999999999855569999999 6788


Q ss_pred             CCCCCeeEEEEEeCcccccceeeeEEEEecC
Q 031185           77 FKADDKMGKAYLNLQPIISAARLRHLVHVSS  107 (164)
Q Consensus        77 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~  107 (164)
                      ++++++||.+.|+|+.+..+.....|+.|..
T Consensus       108 ~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~  138 (146)
T cd04028         108 MDKKVFMGVAQILLDDLDLSNLVIGWYKLFP  138 (146)
T ss_pred             CCCCceEEEEEEEcccccCCCCceeEEecCC
Confidence            8889999999999999876666666766653

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1)

Probab=99.88  E-value=7e-21  Score=126.06  Aligned_cols=99  Identities=22%  Similarity=0.412  Sum_probs=83.8

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCcEEEEEECCEE-EEeeeeeCCCCCeEeceEEEEeeCCC-ceEEEEEEEcCCCCCCCe
Q 031185            5 FGQLKVTVVQGKRLVIRDFKSSDPYVVLKLGNQM-AKTKVINSCLNPVWNEEHSLSLTEPV-GVLSLEVFDKDRFKADDK   82 (164)
Q Consensus         5 ~~~L~v~i~~a~~L~~~~~~~~dpyv~v~~~~~~-~~T~~~~~t~~P~w~e~~~f~~~~~~-~~L~v~v~d~~~~~~d~~   82 (164)
                      ...|+|+|++|+||+..  +.+||||.+.+++.. .+|++. ++.||.|||+|.|.+..+. ..+.|.|||++.+++|++
T Consensus         3 ~~~L~V~Vi~A~~L~~~--~~~DPYv~v~l~~~~~~kT~v~-~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~d~~   79 (126)
T cd08400           3 VRSLQLNVLEAHKLPVK--HVPHPYCVISLNEVKVARTKVR-EGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSKDSE   79 (126)
T ss_pred             eeEEEEEEEEeeCCCCC--CCCCeeEEEEECCEeEEEeecC-CCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCCCCe
Confidence            45799999999999875  468999999998754 688874 6899999999999866543 478999999999999999


Q ss_pred             eEEEEEeCcccccceeeeEEEEec
Q 031185           83 MGKAYLNLQPIISAARLRHLVHVS  106 (164)
Q Consensus        83 lG~~~i~l~~l~~~~~~~~~~~l~  106 (164)
                      ||.+.++|..+..+...+.|+.|.
T Consensus        80 iG~v~i~l~~l~~~~~~~~W~~L~  103 (126)
T cd08400          80 IAEVTVQLSKLQNGQETDEWYPLS  103 (126)
T ss_pred             EEEEEEEHhHccCCCcccEeEEcc
Confidence            999999999988877666776665

RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki

>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.87  E-value=1.5e-21  Score=128.31  Aligned_cols=85  Identities=35%  Similarity=0.521  Sum_probs=77.2

Q ss_pred             EEEEEEEeecCCCCCCCCCCcEEEEEECCEEEEeeeeeCCCCCeEeceEEEEeeCC-CceEEEEEEEcCCCCCCCeeEEE
Q 031185            8 LKVTVVQGKRLVIRDFKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEP-VGVLSLEVFDKDRFKADDKMGKA   86 (164)
Q Consensus         8 L~v~i~~a~~L~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~-~~~L~v~v~d~~~~~~d~~lG~~   86 (164)
                      |.|+|++|++|+..   .+||||++.+++...+|++++++.||.|||+|.|.+... ...|.++|||++.. ++++||++
T Consensus         2 L~V~Vi~a~~L~~~---~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~-~~~~lG~~   77 (121)
T cd08378           2 LYVRVVKARGLPAN---SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKA-KDDFLGGV   77 (121)
T ss_pred             EEEEEEEecCCCcc---cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCC-cCceeeeE
Confidence            88999999999876   789999999999999999999999999999999998763 45899999999987 78999999


Q ss_pred             EEeCcccccc
Q 031185           87 YLNLQPIISA   96 (164)
Q Consensus        87 ~i~l~~l~~~   96 (164)
                      .++++++...
T Consensus        78 ~i~l~~l~~~   87 (121)
T cd08378          78 CFDLSEVPTR   87 (121)
T ss_pred             EEEhHhCcCC
Confidence            9999988653

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5

Probab=99.87  E-value=2e-21  Score=128.44  Aligned_cols=103  Identities=26%  Similarity=0.340  Sum_probs=89.0

Q ss_pred             CcceEEEEEEEEeecCCCCC--CCCCCcEEEEEEC-----CEEEEeeeeeCCCCCeEeceEEEEeeCC---CceEEEEEE
Q 031185            3 QPFGQLKVTVVQGKRLVIRD--FKSSDPYVVLKLG-----NQMAKTKVINSCLNPVWNEEHSLSLTEP---VGVLSLEVF   72 (164)
Q Consensus         3 ~~~~~L~v~i~~a~~L~~~~--~~~~dpyv~v~~~-----~~~~~T~~~~~t~~P~w~e~~~f~~~~~---~~~L~v~v~   72 (164)
                      ...+.|.|+|++|+||+..+  .+.+||||++++.     ..+++|++++++.||.|||+|.|.+...   ...|.++||
T Consensus        12 ~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V~   91 (125)
T cd04029          12 YKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSVW   91 (125)
T ss_pred             CCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEEE
Confidence            46788999999999999876  4789999999993     2357999999999999999999998653   348999999


Q ss_pred             EcCCCCCCCeeEEEEEeCcccccceeeeEEEEe
Q 031185           73 DKDRFKADDKMGKAYLNLQPIISAARLRHLVHV  105 (164)
Q Consensus        73 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l  105 (164)
                      |++.++++++||++.+++..+......+.|++|
T Consensus        92 d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l  124 (125)
T cd04029          92 HYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPL  124 (125)
T ss_pred             ECCCCCCCcEEEEEEEeCCcccccCCcccEEEC
Confidence            999999999999999999999887777777665

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2

>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon

Probab=99.87  E-value=7.6e-21  Score=126.89  Aligned_cols=117  Identities=24%  Similarity=0.429  Sum_probs=96.9

Q ss_pred             cceEEEEEEEEeecCCCCC-C----------CCCCcEEEEEECCEE-EEeeeeeCCCCCeEeceEEEEeeCCCceEEEEE
Q 031185            4 PFGQLKVTVVQGKRLVIRD-F----------KSSDPYVVLKLGNQM-AKTKVINSCLNPVWNEEHSLSLTEPVGVLSLEV   71 (164)
Q Consensus         4 ~~~~L~v~i~~a~~L~~~~-~----------~~~dpyv~v~~~~~~-~~T~~~~~t~~P~w~e~~~f~~~~~~~~L~v~v   71 (164)
                      ..|.|+|+|++|++|+..+ .          +.+||||++.++++. .+|++..++.+|.|||+|.|.+.. ...|.+.|
T Consensus         2 ~~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~-~~~l~~~v   80 (132)
T cd04014           2 FTGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVHN-GRNLELTV   80 (132)
T ss_pred             cceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcCC-CCEEEEEE
Confidence            3588999999999998777 3          478999999998765 689999999999999999999974 46899999


Q ss_pred             EEcCCCCCCCeeEEEEEeCcccccceeeeEEEEecCCceeeEEEeeCCCceeeccceEEEECCEEEeeeeEEEceeeeee
Q 031185           72 FDKDRFKADDKMGKAYLNLQPIISAARLRHLVHVSSGETPLRKIIPDSENCLARESSIICINGEVVQNVWLRLCEVESGE  151 (164)
Q Consensus        72 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~G~  151 (164)
                      ||++.++.+++||++.++|.++....          +                           -..+.|++|.  +.|+
T Consensus        81 ~d~~~~~~~~~iG~~~i~l~~l~~~~----------~---------------------------~~~~~w~~L~--~~G~  121 (132)
T cd04014          81 FHDAAIGPDDFVANCTISFEDLIQRG----------S---------------------------GSFDLWVDLE--PQGK  121 (132)
T ss_pred             EeCCCCCCCceEEEEEEEhHHhcccC----------C---------------------------CcccEEEEcc--CCcE
Confidence            99998888999999999999876520          0                           0125677776  5699


Q ss_pred             EEEEEEEEe
Q 031185          152 IELKVKIVD  160 (164)
Q Consensus       152 v~~~l~~~~  160 (164)
                      |+++++|-.
T Consensus       122 l~l~~~~~~  130 (132)
T cd04014         122 LHVKIELKG  130 (132)
T ss_pred             EEEEEEEec
Confidence            999998854

A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.87  E-value=2.7e-21  Score=126.34  Aligned_cols=99  Identities=21%  Similarity=0.299  Sum_probs=85.3

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCcEEEEEECCEEEEeeeeeCCCCCeEeceEEEEeeCCCceEEEEEEEcCCCCCCCeeE
Q 031185            5 FGQLKVTVVQGKRLVIRDFKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEPVGVLSLEVFDKDRFKADDKMG   84 (164)
Q Consensus         5 ~~~L~v~i~~a~~L~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~L~v~v~d~~~~~~d~~lG   84 (164)
                      ++.|.|+|++|++|+..+  ..||||++++++++.+|++.++ .||.|||.|.|.+......|.|+|||++.+ .|++||
T Consensus         1 m~~L~V~Vv~Ar~L~~~~--~~dPYV~Ik~g~~k~kT~v~~~-~nP~WnE~F~F~~~~~~~~L~v~V~dkd~~-~DD~lG   76 (127)
T cd08394           1 MSLLCVLVKKAKLDGAPD--KFNTYVTLKVQNVKSTTIAVRG-SQPCWEQDFMFEINRLDLGLVIELWNKGLI-WDTLVG   76 (127)
T ss_pred             CceEEEEEEEeeCCCCCC--CCCCeEEEEECCEEeEeeECCC-CCCceeeEEEEEEcCCCCEEEEEEEeCCCc-CCCceE
Confidence            368999999999997654  4589999999999999999988 599999999999987766899999999977 899999


Q ss_pred             EEEEeCcccccceee--eEEEEecC
Q 031185           85 KAYLNLQPIISAARL--RHLVHVSS  107 (164)
Q Consensus        85 ~~~i~l~~l~~~~~~--~~~~~l~~  107 (164)
                      ++.++|.++......  ..||+|..
T Consensus        77 ~v~i~L~~v~~~~~~~~~~Wy~L~~  101 (127)
T cd08394          77 TVWIPLSTIRQSNEEGPGEWLTLDS  101 (127)
T ss_pred             EEEEEhHHcccCCCCCCCccEecCh
Confidence            999999998876544  56666654

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin

Probab=99.87  E-value=9e-21  Score=125.74  Aligned_cols=116  Identities=24%  Similarity=0.269  Sum_probs=97.2

Q ss_pred             EEEeecCCCCCCCCCCcEEEEEECCEEEEeeeeeCCCCCeEeceEEEEeeCC---CceEEEEEEEcCCCCCCCeeEEEEE
Q 031185           12 VVQGKRLVIRDFKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEP---VGVLSLEVFDKDRFKADDKMGKAYL   88 (164)
Q Consensus        12 i~~a~~L~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~---~~~L~v~v~d~~~~~~d~~lG~~~i   88 (164)
                      |++|++|+. ..+.+||||++.+++..++|++++++.+|.|+|+|.|.+...   ...|.++|||++..++|++||++.+
T Consensus         2 vi~a~~L~~-~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~~   80 (127)
T cd08373           2 VVSLKNLPG-LKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSATV   80 (127)
T ss_pred             eEEeeCCcc-cCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEEEE
Confidence            678999988 567899999999999999999999999999999999998753   3589999999999989999999999


Q ss_pred             eCcccccceeeeEEEEecCCceeeEEEeeCCCceeeccceEEEECCEEEeeeeEEEceeeeeeEEEEEEEEeCCC
Q 031185           89 NLQPIISAARLRHLVHVSSGETPLRKIIPDSENCLARESSIICINGEVVQNVWLRLCEVESGEIELKVKIVDAPS  163 (164)
Q Consensus        89 ~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~G~v~~~l~~~~~~~  163 (164)
                      ++.++..+.....|++|...                                  . .....|+|++.++|.|+.+
T Consensus        81 ~l~~l~~~~~~~~~~~L~~~----------------------------------~-~~~~~~~l~l~~~~~~~~~  120 (127)
T cd08373          81 SLQDLVSEGLLEVTEPLLDS----------------------------------N-GRPTGATISLEVSYQPPDG  120 (127)
T ss_pred             EhhHcccCCceEEEEeCcCC----------------------------------C-CCcccEEEEEEEEEeCCCC
Confidence            99998877666666666422                                  0 1123699999999999864

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD)

Probab=99.87  E-value=3.6e-21  Score=124.02  Aligned_cols=92  Identities=25%  Similarity=0.404  Sum_probs=82.4

Q ss_pred             eEEEEEEEEeecCCCCC-C----CCCCcEEEEEECCEEEEeeeeeCCCCCeEeceEEEEeeCCC--ceEEEEEEEcCCCC
Q 031185            6 GQLKVTVVQGKRLVIRD-F----KSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEPV--GVLSLEVFDKDRFK   78 (164)
Q Consensus         6 ~~L~v~i~~a~~L~~~~-~----~~~dpyv~v~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~--~~L~v~v~d~~~~~   78 (164)
                      |.|.|+|++|++|+..+ .    +.+||||++.+++..++|++++++.||.|||.|.|.+....  ..|.++|||++.++
T Consensus         1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~   80 (108)
T cd04039           1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFS   80 (108)
T ss_pred             CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCCC
Confidence            68999999999999876 2    34899999999999999999999999999999999986543  37999999999999


Q ss_pred             CCCeeEEEEEeCcccccce
Q 031185           79 ADDKMGKAYLNLQPIISAA   97 (164)
Q Consensus        79 ~d~~lG~~~i~l~~l~~~~   97 (164)
                      +|++||++.++|+++....
T Consensus        81 ~dd~IG~~~l~L~~l~~~~   99 (108)
T cd04039          81 FNDYVATGSLSVQELLNAA   99 (108)
T ss_pred             CCcceEEEEEEHHHHHhhC
Confidence            9999999999999987764

PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM

>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8

Probab=99.87  E-value=4.8e-21  Score=126.55  Aligned_cols=104  Identities=24%  Similarity=0.424  Sum_probs=90.8

Q ss_pred             CcceEEEEEEEEeecCCCCC-CCCCCcEEEEEEC---CEEEEeeeeeCCCCCeEeceEEEEeeCC---CceEEEEEEEcC
Q 031185            3 QPFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLG---NQMAKTKVINSCLNPVWNEEHSLSLTEP---VGVLSLEVFDKD   75 (164)
Q Consensus         3 ~~~~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~---~~~~~T~~~~~t~~P~w~e~~~f~~~~~---~~~L~v~v~d~~   75 (164)
                      +..+.|.|+|++|++|+..+ .+.+||||++.+.   ...++|++++++.+|.|+|+|.|.+...   ...|.++|||++
T Consensus        13 ~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~   92 (124)
T cd08387          13 KDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDFD   92 (124)
T ss_pred             CCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEECC
Confidence            45689999999999999988 8889999999983   3458999999999999999999998754   248999999999


Q ss_pred             CCCCCCeeEEEEEeCcccccceeeeEEEEec
Q 031185           76 RFKADDKMGKAYLNLQPIISAARLRHLVHVS  106 (164)
Q Consensus        76 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~  106 (164)
                      .++++++||++.++++++..+...+.|+.|.
T Consensus        93 ~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l~  123 (124)
T cd08387          93 QFSRDECIGVVELPLAEVDLSEKLDLWRKIQ  123 (124)
T ss_pred             CCCCCceeEEEEEecccccCCCCcceEEECc
Confidence            9989999999999999998777777776654

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv

>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.87  E-value=8.9e-21  Score=125.75  Aligned_cols=99  Identities=27%  Similarity=0.546  Sum_probs=84.4

Q ss_pred             eEEEEEEEEeecCCCCC-CCCCCcEEEEEECCEEEEeeeeeCCCCCeEeceEEEEeeCCCceEEEEEEEcCCC-------
Q 031185            6 GQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEPVGVLSLEVFDKDRF-------   77 (164)
Q Consensus         6 ~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~L~v~v~d~~~~-------   77 (164)
                      ..|+|+|++|++|+..+ .+.+||||++.+++..++|+++.++.+|.|+|.|.|.+......|.++|||++..       
T Consensus         1 ~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~~~~l~i~v~d~d~~~~~~~~~   80 (127)
T cd04027           1 AKISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSSDRIKVRVWDEDDDIKSRLKQ   80 (127)
T ss_pred             CeEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCCCCEEEEEEEECCCCcccccce
Confidence            36899999999999988 8889999999999888999999999999999999999876656899999999852       


Q ss_pred             ----CCCCeeEEEEEeCcccccceeeeEEEEec
Q 031185           78 ----KADDKMGKAYLNLQPIISAARLRHLVHVS  106 (164)
Q Consensus        78 ----~~d~~lG~~~i~l~~l~~~~~~~~~~~l~  106 (164)
                          +.+++||.+.+++.++..  ....|+.|.
T Consensus        81 ~~~~~~~~~iG~~~i~l~~~~~--~~~~w~~L~  111 (127)
T cd04027          81 KFTRESDDFLGQTIIEVRTLSG--EMDVWYNLE  111 (127)
T ss_pred             eccccCCCcceEEEEEhHHccC--CCCeEEECc
Confidence                468999999999987642  234555554

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev

>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2

Probab=99.86  E-value=2.1e-21  Score=128.42  Aligned_cols=102  Identities=27%  Similarity=0.351  Sum_probs=87.0

Q ss_pred             cceEEEEEEEEeecCCCCC-C-CCCCcEEEEEEC-----CEEEEeeeeeCCCCCeEeceEEEEeeCC---CceEEEEEEE
Q 031185            4 PFGQLKVTVVQGKRLVIRD-F-KSSDPYVVLKLG-----NQMAKTKVINSCLNPVWNEEHSLSLTEP---VGVLSLEVFD   73 (164)
Q Consensus         4 ~~~~L~v~i~~a~~L~~~~-~-~~~dpyv~v~~~-----~~~~~T~~~~~t~~P~w~e~~~f~~~~~---~~~L~v~v~d   73 (164)
                      ..+.|.|+|++|+||+..+ . +.+||||++++.     ..+++|++++++.||.|||+|.|.+...   ...|.++|||
T Consensus        13 ~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~d   92 (125)
T cd08393          13 KLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVWH   92 (125)
T ss_pred             CCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEEe
Confidence            4578999999999999988 5 789999999993     2347999999999999999999998643   2489999999


Q ss_pred             cCCCCCCCeeEEEEEeCcccccceeeeEEEEe
Q 031185           74 KDRFKADDKMGKAYLNLQPIISAARLRHLVHV  105 (164)
Q Consensus        74 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l  105 (164)
                      ++.++++++||++.++|.++........|+.|
T Consensus        93 ~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L  124 (125)
T cd08393          93 RDSLGRNSFLGEVEVDLGSWDWSNTQPTWYPL  124 (125)
T ss_pred             CCCCCCCcEeEEEEEecCccccCCCCcceEEC
Confidence            99999999999999999998666555566554

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety

>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins

Probab=99.86  E-value=6.1e-21  Score=122.54  Aligned_cols=97  Identities=28%  Similarity=0.432  Sum_probs=85.0

Q ss_pred             EEEEEEEEeecCCCCC-CCCCCcEEEEEECCEEEEeeeeeCCCCCeEeceEEEEeeCC-CceEEEEEEEcCCCCCCCeeE
Q 031185            7 QLKVTVVQGKRLVIRD-FKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEP-VGVLSLEVFDKDRFKADDKMG   84 (164)
Q Consensus         7 ~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~-~~~L~v~v~d~~~~~~d~~lG   84 (164)
                      .|.|+|++|++|+..+ .+.+||||+++++++.++|+++.++.+|.|||.|.|.+..+ ...|.++|||++.   +++||
T Consensus         1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~---~~~iG   77 (105)
T cd04050           1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT---GKSLG   77 (105)
T ss_pred             CEEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC---CCccE
Confidence            4889999999999988 88999999999999999999999999999999999999875 3489999999886   78999


Q ss_pred             EEEEeCcccccce--eeeEEEEec
Q 031185           85 KAYLNLQPIISAA--RLRHLVHVS  106 (164)
Q Consensus        85 ~~~i~l~~l~~~~--~~~~~~~l~  106 (164)
                      ++.++|.++....  ....||.|.
T Consensus        78 ~~~i~l~~l~~~~~~~~~~w~~L~  101 (105)
T cd04050          78 SLTLPLSELLKEPDLTLDQPFPLD  101 (105)
T ss_pred             EEEEEHHHhhccccceeeeeEecC
Confidence            9999999987654  345566654

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

Probab=99.86  E-value=7.8e-21  Score=125.52  Aligned_cols=103  Identities=29%  Similarity=0.372  Sum_probs=90.0

Q ss_pred             cceEEEEEEEEeecCCCCC-CCCCCcEEEEEEC---CEEEEeeeeeCCCCCeEeceEEEEeeCC---CceEEEEEEEcCC
Q 031185            4 PFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLG---NQMAKTKVINSCLNPVWNEEHSLSLTEP---VGVLSLEVFDKDR   76 (164)
Q Consensus         4 ~~~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~---~~~~~T~~~~~t~~P~w~e~~~f~~~~~---~~~L~v~v~d~~~   76 (164)
                      ..+.|.|+|++|++|+..+ .+.+||||++.+.   ...++|++++++.||.|||+|.|.+...   ...|.++|||++.
T Consensus        14 ~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d~   93 (124)
T cd08385          14 QSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFDR   93 (124)
T ss_pred             CCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCCC
Confidence            4678999999999999988 7889999999984   2457999999999999999999998653   3489999999999


Q ss_pred             CCCCCeeEEEEEeCcccccceeeeEEEEec
Q 031185           77 FKADDKMGKAYLNLQPIISAARLRHLVHVS  106 (164)
Q Consensus        77 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~  106 (164)
                      ++++++||++.+++.++..+...+.|++|.
T Consensus        94 ~~~~~~lG~~~i~l~~~~~~~~~~~W~~l~  123 (124)
T cd08385          94 FSKHDLIGEVRVPLLTVDLGHVTEEWRDLE  123 (124)
T ss_pred             CCCCceeEEEEEecCcccCCCCcceEEEcc
Confidence            989999999999999987777777777764

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and

>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin

Probab=99.86  E-value=2.7e-20  Score=124.68  Aligned_cols=83  Identities=28%  Similarity=0.481  Sum_probs=74.2

Q ss_pred             EEEEEEEEeecCCCCC-CCCCCcEEEEEECCEEEEeeeeeCCCCCeEeceEEEEeeCC----------CceEEEEEEEcC
Q 031185            7 QLKVTVVQGKRLVIRD-FKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEP----------VGVLSLEVFDKD   75 (164)
Q Consensus         7 ~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~----------~~~L~v~v~d~~   75 (164)
                      +|+|+|++|++|+..+ .+.+||||++.+++..++|++++++.||.|||.|.|.+...          ...|.++|||++
T Consensus         2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d   81 (135)
T cd04017           2 QLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQD   81 (135)
T ss_pred             EEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeCc
Confidence            5899999999999989 88999999999999999999999999999999999975321          136899999999


Q ss_pred             CCCCCCeeEEEEEe
Q 031185           76 RFKADDKMGKAYLN   89 (164)
Q Consensus        76 ~~~~d~~lG~~~i~   89 (164)
                      ..++|++||++.+.
T Consensus        82 ~~~~d~~iG~~~i~   95 (135)
T cd04017          82 SVGKDEFLGRSVAK   95 (135)
T ss_pred             CCCCCccceEEEee
Confidence            99899999999873

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone

Probab=99.86  E-value=6.1e-21  Score=123.51  Aligned_cols=98  Identities=32%  Similarity=0.606  Sum_probs=84.9

Q ss_pred             EEEEEEEeecCCCCC--CCCCCcEEEEEECCEEEEeeeeeCCCCCeE-eceEEEEeeCC---CceEEEEEEEcCCCCCCC
Q 031185            8 LKVTVVQGKRLVIRD--FKSSDPYVVLKLGNQMAKTKVINSCLNPVW-NEEHSLSLTEP---VGVLSLEVFDKDRFKADD   81 (164)
Q Consensus         8 L~v~i~~a~~L~~~~--~~~~dpyv~v~~~~~~~~T~~~~~t~~P~w-~e~~~f~~~~~---~~~L~v~v~d~~~~~~d~   81 (164)
                      |.|+|++|++|+..+  .+.+||||++++++..++|++++++.+|.| +|+|.|.+...   ...|.++|||++.+++++
T Consensus         1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~~~   80 (110)
T cd08688           1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSAND   80 (110)
T ss_pred             CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCCCC
Confidence            679999999999887  578999999999999999999999999999 99999998764   258999999999998999


Q ss_pred             eeEEEEEeCcccccc---eeeeEEEEe
Q 031185           82 KMGKAYLNLQPIISA---ARLRHLVHV  105 (164)
Q Consensus        82 ~lG~~~i~l~~l~~~---~~~~~~~~l  105 (164)
                      +||++.+++.++...   .....||+|
T Consensus        81 ~iG~~~~~l~~l~~~~~~~~~~~w~~l  107 (110)
T cd08688          81 AIGKVYIDLNPLLLKDSVSQISGWFPI  107 (110)
T ss_pred             ceEEEEEeHHHhcccCCccccCCeEEc
Confidence            999999999998773   334445444

The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a

>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins

Probab=99.85  E-value=3.8e-20  Score=122.09  Aligned_cols=97  Identities=25%  Similarity=0.535  Sum_probs=83.6

Q ss_pred             EEEEEEEeecCCCCC-CCCCCcEEEEEEC-CEEEEeeeeeCCCCCeEeceEEEEeeCCCceEEEEEEEcCCCCC--CCee
Q 031185            8 LKVTVVQGKRLVIRD-FKSSDPYVVLKLG-NQMAKTKVINSCLNPVWNEEHSLSLTEPVGVLSLEVFDKDRFKA--DDKM   83 (164)
Q Consensus         8 L~v~i~~a~~L~~~~-~~~~dpyv~v~~~-~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~L~v~v~d~~~~~~--d~~l   83 (164)
                      |+|+|++|++|+..+ .+.+||||+++++ ...++|++++++.||.|+|+|.|.+.. ...|.++|||++.+++  |++|
T Consensus         2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~-~~~l~i~V~d~~~~~~~~d~~l   80 (123)
T cd08382           2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP-SSIITIQVFDQKKFKKKDQGFL   80 (123)
T ss_pred             eEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC-CCEEEEEEEECCCCCCCCCceE
Confidence            789999999999988 8899999999996 667999999999999999999999976 5699999999998865  5799


Q ss_pred             EEEEEeCcccccceee-eEEEEe
Q 031185           84 GKAYLNLQPIISAARL-RHLVHV  105 (164)
Q Consensus        84 G~~~i~l~~l~~~~~~-~~~~~l  105 (164)
                      |++.+++.++...... ..|+.+
T Consensus        81 G~~~i~l~~l~~~~~~~~~~~~l  103 (123)
T cd08382          81 GCVRIRANAVLPLKDTGYQRLDL  103 (123)
T ss_pred             eEEEEEHHHccccCCCccceeEe
Confidence            9999999998765432 345444

A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are

>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

Probab=99.85  E-value=6.6e-20  Score=121.35  Aligned_cols=88  Identities=33%  Similarity=0.472  Sum_probs=78.4

Q ss_pred             EEEEEEEEeecCCCCC-CCCCCcEEEEEECC---EEEEeeeeeCCCCCeEeceEEEEeeCC-CceEEEEEEEcCCCCCCC
Q 031185            7 QLKVTVVQGKRLVIRD-FKSSDPYVVLKLGN---QMAKTKVINSCLNPVWNEEHSLSLTEP-VGVLSLEVFDKDRFKADD   81 (164)
Q Consensus         7 ~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~~---~~~~T~~~~~t~~P~w~e~~~f~~~~~-~~~L~v~v~d~~~~~~d~   81 (164)
                      .|+|+|++|++|+..+ .+.+||||.+.+.+   ..++|++++++.+|.|||+|.|.+... ...|.|+|||++..++++
T Consensus         2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~~   81 (126)
T cd04043           2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHD   81 (126)
T ss_pred             EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence            5899999999999988 88999999999853   358999999999999999999999875 358999999999988899


Q ss_pred             eeEEEEEeCcccc
Q 031185           82 KMGKAYLNLQPII   94 (164)
Q Consensus        82 ~lG~~~i~l~~l~   94 (164)
                      +||++.++|.++.
T Consensus        82 ~iG~~~i~l~~~~   94 (126)
T cd04043          82 LCGRASLKLDPKR   94 (126)
T ss_pred             eEEEEEEecCHHH
Confidence            9999999998653

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap

>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.85  E-value=1.7e-20  Score=123.96  Aligned_cols=102  Identities=29%  Similarity=0.393  Sum_probs=84.6

Q ss_pred             CcceEEEEEEEEeecCCCCC-CCCCCcEEEEEECC-----EEEEeeeeeCCCCCeEeceEEEEeeC----CCceEEEEEE
Q 031185            3 QPFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGN-----QMAKTKVINSCLNPVWNEEHSLSLTE----PVGVLSLEVF   72 (164)
Q Consensus         3 ~~~~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~~-----~~~~T~~~~~t~~P~w~e~~~f~~~~----~~~~L~v~v~   72 (164)
                      ...+.|.|+|++|++|+..+ .+.+||||++++.+     ..++|++++++.+|.|||+|.|.+..    ....|.++||
T Consensus        13 ~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~   92 (125)
T cd04031          13 KVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVW   92 (125)
T ss_pred             CCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEE
Confidence            34688999999999999988 78899999999953     56899999999999999999998644    2348999999


Q ss_pred             EcCCCCCCCeeEEEEEeCcccccceeeeEEEEe
Q 031185           73 DKDRFKADDKMGKAYLNLQPIISAARLRHLVHV  105 (164)
Q Consensus        73 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l  105 (164)
                      |++.++++++||++.++|.+.. ......||+|
T Consensus        93 d~~~~~~~~~iG~~~i~l~~~~-~~~~~~W~~L  124 (125)
T cd04031          93 DYDRDGENDFLGEVVIDLADAL-LDDEPHWYPL  124 (125)
T ss_pred             eCCCCCCCcEeeEEEEeccccc-ccCCcceEEC
Confidence            9999988999999999999832 2233455554

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene

Probab=99.85  E-value=2.2e-20  Score=123.36  Aligned_cols=103  Identities=30%  Similarity=0.491  Sum_probs=92.5

Q ss_pred             eEEEEEEEEeecCCCCC-CCCCCcEEEEEECCEEEEeeeeeC-CCCCeEeceEEEEeeCC----CceEEEEEEEcCCCCC
Q 031185            6 GQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGNQMAKTKVINS-CLNPVWNEEHSLSLTEP----VGVLSLEVFDKDRFKA   79 (164)
Q Consensus         6 ~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~~~~~~T~~~~~-t~~P~w~e~~~f~~~~~----~~~L~v~v~d~~~~~~   79 (164)
                      |.|.|+|++|++|+..+ .+.+||||++++++..++|++..+ +.+|.|||.|.|.+...    ...|.|+|||.+.+++
T Consensus         1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~   80 (124)
T cd04049           1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSD   80 (124)
T ss_pred             CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCCC
Confidence            68999999999999888 889999999999988899998875 89999999999999876    3589999999999889


Q ss_pred             CCeeEEEEEeCcccccceeeeEEEEecCC
Q 031185           80 DDKMGKAYLNLQPIISAARLRHLVHVSSG  108 (164)
Q Consensus        80 d~~lG~~~i~l~~l~~~~~~~~~~~l~~~  108 (164)
                      +++||++.+++.++..++..+.|+.|...
T Consensus        81 d~~iG~~~i~l~~l~~~~~~~~~~~l~p~  109 (124)
T cd04049          81 DDFIGEATIHLKGLFEEGVEPGTAELVPA  109 (124)
T ss_pred             CCeEEEEEEEhHHhhhCCCCcCceEeecc
Confidence            99999999999999988877778777643

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai

>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

Probab=99.85  E-value=1.2e-20  Score=124.80  Aligned_cols=92  Identities=24%  Similarity=0.380  Sum_probs=82.8

Q ss_pred             EEEEEEEEeecCCCCC-CCCCCcEEEEEECC-EEEEeeeee-CCCCCeEeceEEEEeeCC-----CceEEEEEEEcCCCC
Q 031185            7 QLKVTVVQGKRLVIRD-FKSSDPYVVLKLGN-QMAKTKVIN-SCLNPVWNEEHSLSLTEP-----VGVLSLEVFDKDRFK   78 (164)
Q Consensus         7 ~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~~-~~~~T~~~~-~t~~P~w~e~~~f~~~~~-----~~~L~v~v~d~~~~~   78 (164)
                      +|+|+|++|++|+..+ .+.+||||.+++++ ..++|++.. ++.+|.|||.|.|.+...     ...|.++|||++.++
T Consensus         1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~   80 (125)
T cd04051           1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSL   80 (125)
T ss_pred             CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCC
Confidence            4899999999999988 88999999999987 788999875 489999999999999876     459999999999988


Q ss_pred             CCCeeEEEEEeCccccccee
Q 031185           79 ADDKMGKAYLNLQPIISAAR   98 (164)
Q Consensus        79 ~d~~lG~~~i~l~~l~~~~~   98 (164)
                      .+++||++.+++.++..+..
T Consensus        81 ~~~~lG~~~i~l~~l~~~~~  100 (125)
T cd04051          81 GDKLIGEVRVPLKDLLDGAS  100 (125)
T ss_pred             CCCcEEEEEEEHHHhhcccC
Confidence            89999999999999987754

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such

>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins

Probab=99.85  E-value=6.4e-20  Score=120.42  Aligned_cols=100  Identities=25%  Similarity=0.411  Sum_probs=88.1

Q ss_pred             eEEEEEEEEeecCCCCC-CCCCCcEEEEEECC-EEEEeeeeeCCCCCeEeceEEEEeeCCCceEEEEEEEcCCCCCCCee
Q 031185            6 GQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGN-QMAKTKVINSCLNPVWNEEHSLSLTEPVGVLSLEVFDKDRFKADDKM   83 (164)
Q Consensus         6 ~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~~-~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~L~v~v~d~~~~~~d~~l   83 (164)
                      |.|.|+|++|++|+..+ .+.+||||++++++ ..++|+++.++.+|.|+|.|.|.+......|.|+|||++.+++|++|
T Consensus         1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~~~~L~v~v~d~~~~~~d~~I   80 (120)
T cd04045           1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSPNQKITLEVMDYEKVGKDRSL   80 (120)
T ss_pred             CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCCCCEEEEEEEECCCCCCCCee
Confidence            68999999999999988 88999999999976 45899999999999999999999887767999999999999899999


Q ss_pred             EEEEEeCcccccceeeeEEEEec
Q 031185           84 GKAYLNLQPIISAARLRHLVHVS  106 (164)
Q Consensus        84 G~~~i~l~~l~~~~~~~~~~~l~  106 (164)
                      |++.+++.++... ..+.||.+-
T Consensus        81 G~~~~~l~~l~~~-~~~~~~~~~  102 (120)
T cd04045          81 GSVEINVSDLIKK-NEDGKYVEY  102 (120)
T ss_pred             eEEEEeHHHhhCC-CCCceEEec
Confidence            9999999999887 444454443

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

Probab=99.85  E-value=2.9e-20  Score=123.21  Aligned_cols=102  Identities=25%  Similarity=0.329  Sum_probs=88.4

Q ss_pred             cceEEEEEEEEeecCCCCC-CCCCCcEEEEEEC-----CEEEEeeeeeCCCCCeEeceEEEEeeCC---CceEEEEEEEc
Q 031185            4 PFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLG-----NQMAKTKVINSCLNPVWNEEHSLSLTEP---VGVLSLEVFDK   74 (164)
Q Consensus         4 ~~~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~-----~~~~~T~~~~~t~~P~w~e~~~f~~~~~---~~~L~v~v~d~   74 (164)
                      ..+.|.|+|++|+||+..+ .+.+||||++.+.     ...++|++++++.||.|||+|.|.+...   ...|.+.|||.
T Consensus        14 ~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~~~   93 (127)
T cd04030          14 QRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVKNS   93 (127)
T ss_pred             CCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEEEC
Confidence            4588999999999999998 7899999999994     3568999999999999999999998643   24899999999


Q ss_pred             CCC--CCCCeeEEEEEeCcccccceeeeEEEEe
Q 031185           75 DRF--KADDKMGKAYLNLQPIISAARLRHLVHV  105 (164)
Q Consensus        75 ~~~--~~d~~lG~~~i~l~~l~~~~~~~~~~~l  105 (164)
                      +.+  +++++||++.+++.++..+.....|+.|
T Consensus        94 ~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L  126 (127)
T cd04030          94 KSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDL  126 (127)
T ss_pred             CcccCCCCceEEEEEEecccccccCCccceEEC
Confidence            875  6899999999999998777666667665

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1

>cd04041 C2A_fungal C2 domain first repeat; fungal group

Probab=99.85  E-value=2e-20  Score=121.29  Aligned_cols=91  Identities=36%  Similarity=0.576  Sum_probs=81.0

Q ss_pred             eEEEEEEEEeecCCCCC-C-CCCCcEEEEEEC---CEEEEeeeeeCCCCCeEeceEEEEeeCC----CceEEEEEEEcCC
Q 031185            6 GQLKVTVVQGKRLVIRD-F-KSSDPYVVLKLG---NQMAKTKVINSCLNPVWNEEHSLSLTEP----VGVLSLEVFDKDR   76 (164)
Q Consensus         6 ~~L~v~i~~a~~L~~~~-~-~~~dpyv~v~~~---~~~~~T~~~~~t~~P~w~e~~~f~~~~~----~~~L~v~v~d~~~   76 (164)
                      |+|+|+|++|++|+..+ . +.+||||++++.   ...++|++++++.||.|||.|.|.+...    ...|.++|||++.
T Consensus         1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~   80 (111)
T cd04041           1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR   80 (111)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence            68999999999999988 6 899999999984   3458999999999999999999987653    3489999999999


Q ss_pred             CCCCCeeEEEEEeCcccccc
Q 031185           77 FKADDKMGKAYLNLQPIISA   96 (164)
Q Consensus        77 ~~~d~~lG~~~i~l~~l~~~   96 (164)
                      +++|++||++.+++.++...
T Consensus        81 ~~~dd~lG~~~i~l~~l~~~  100 (111)
T cd04041          81 FTADDRLGRVEIDLKELIED  100 (111)
T ss_pred             CCCCCcceEEEEEHHHHhcC
Confidence            98999999999999998743

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan

>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11

Probab=99.85  E-value=5e-20  Score=122.25  Aligned_cols=102  Identities=26%  Similarity=0.334  Sum_probs=84.1

Q ss_pred             cceEEEEEEEEeecCCCCC-C-CCCCcEEEEEEC---CEEEEeeeeeCCCCCeEeceEEEE-eeCC---CceEEEEEEEc
Q 031185            4 PFGQLKVTVVQGKRLVIRD-F-KSSDPYVVLKLG---NQMAKTKVINSCLNPVWNEEHSLS-LTEP---VGVLSLEVFDK   74 (164)
Q Consensus         4 ~~~~L~v~i~~a~~L~~~~-~-~~~dpyv~v~~~---~~~~~T~~~~~t~~P~w~e~~~f~-~~~~---~~~L~v~v~d~   74 (164)
                      ..+.|.|+|++|+||+..+ . +.+||||++.+.   .+..+|++++++.||.|||+|.|. +...   ...|.++|||+
T Consensus        14 ~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~   93 (128)
T cd08388          14 EKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSF   93 (128)
T ss_pred             CCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEEc
Confidence            4578999999999999988 5 889999999984   345799999999999999999994 4322   23799999999


Q ss_pred             CCCCCCCeeEEEEEeCcccccc--eeeeEEEEe
Q 031185           75 DRFKADDKMGKAYLNLQPIISA--ARLRHLVHV  105 (164)
Q Consensus        75 ~~~~~d~~lG~~~i~l~~l~~~--~~~~~~~~l  105 (164)
                      +.++++++||++.++|.++.-.  .....|+++
T Consensus        94 d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~  126 (128)
T cd08388          94 DRYSRDDVIGEVVCPLAGADLLNEGELLVSREI  126 (128)
T ss_pred             CCCCCCceeEEEEEeccccCCCCCceEEEEEec
Confidence            9999999999999999988544  445555544

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence

>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3)

Probab=99.84  E-value=1.7e-20  Score=127.04  Aligned_cols=101  Identities=19%  Similarity=0.246  Sum_probs=86.6

Q ss_pred             EEEEEEEEeecCCCCCCCCCCcEEEEEECC-----EEEEeeeeeCCCCCeEeceEEEEeeC----------------CCc
Q 031185            7 QLKVTVVQGKRLVIRDFKSSDPYVVLKLGN-----QMAKTKVINSCLNPVWNEEHSLSLTE----------------PVG   65 (164)
Q Consensus         7 ~L~v~i~~a~~L~~~~~~~~dpyv~v~~~~-----~~~~T~~~~~t~~P~w~e~~~f~~~~----------------~~~   65 (164)
                      .|.|+|++|++|+. ..|.+||||++.+..     ..++|++++++.||.|||+|.|.+..                ...
T Consensus         1 kL~V~Vi~ArnL~~-~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~   79 (148)
T cd04010           1 KLSVRVIECSDLAL-KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKL   79 (148)
T ss_pred             CEEEEEEeCcCCCC-CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEE
Confidence            48999999999987 457899999999965     56899999999999999999999851                113


Q ss_pred             eEEEEEEEcCCCCCCCeeEEEEEeCcccccc-eeeeEEEEecCC
Q 031185           66 VLSLEVFDKDRFKADDKMGKAYLNLQPIISA-ARLRHLVHVSSG  108 (164)
Q Consensus        66 ~L~v~v~d~~~~~~d~~lG~~~i~l~~l~~~-~~~~~~~~l~~~  108 (164)
                      .|.+.|||++.+++|+|||++.|++..+... .....||.|...
T Consensus        80 ~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~  123 (148)
T cd04010          80 ELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPR  123 (148)
T ss_pred             EEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecCCc
Confidence            7899999999988999999999999999887 566778888644

RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3

Probab=99.84  E-value=2.7e-20  Score=123.38  Aligned_cols=93  Identities=25%  Similarity=0.293  Sum_probs=81.4

Q ss_pred             cceEEEEEEEEeecCCCCC-C-CCCCcEEEEEEC-----CEEEEeeeeeCCCCCeEeceEEEEeeCC---CceEEEEEEE
Q 031185            4 PFGQLKVTVVQGKRLVIRD-F-KSSDPYVVLKLG-----NQMAKTKVINSCLNPVWNEEHSLSLTEP---VGVLSLEVFD   73 (164)
Q Consensus         4 ~~~~L~v~i~~a~~L~~~~-~-~~~dpyv~v~~~-----~~~~~T~~~~~t~~P~w~e~~~f~~~~~---~~~L~v~v~d   73 (164)
                      ..+.|.|+|++|+||+.++ . +.+||||++++.     ..+++|++++++.||.|||+|.|.+...   ...|.+.|||
T Consensus        13 ~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~~   92 (128)
T cd08392          13 RTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSVWH   92 (128)
T ss_pred             CCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEEEEe
Confidence            4578999999999999888 4 899999999993     2367999999999999999999998653   3489999999


Q ss_pred             cCCCCCCCeeEEEEEeCcccccc
Q 031185           74 KDRFKADDKMGKAYLNLQPIISA   96 (164)
Q Consensus        74 ~~~~~~d~~lG~~~i~l~~l~~~   96 (164)
                      .+.++++++||++.|+|.++.-.
T Consensus        93 ~~~~~~~~~lG~~~i~L~~~~~~  115 (128)
T cd08392          93 SRTLKRRVFLGEVLIPLADWDFE  115 (128)
T ss_pred             CCCCcCcceEEEEEEEcCCcccC
Confidence            99998999999999999988443

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids

>cd08680 C2_Kibra C2 domain found in Human protein Kibra

Probab=99.84  E-value=1.9e-20  Score=123.34  Aligned_cols=94  Identities=21%  Similarity=0.252  Sum_probs=82.3

Q ss_pred             CcceEEEEEEEEeecCCCCC-CCCCCcEEEEEEC------CEEEEeeeeeCCCCCeEeceEEEEeeCC---CceEEEEEE
Q 031185            3 QPFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLG------NQMAKTKVINSCLNPVWNEEHSLSLTEP---VGVLSLEVF   72 (164)
Q Consensus         3 ~~~~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~------~~~~~T~~~~~t~~P~w~e~~~f~~~~~---~~~L~v~v~   72 (164)
                      ...+.|.|.|++|+||+..+ .+.+||||++++.      ...++|++++++.||.|||+|.|++...   ...|.++||
T Consensus        11 ~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~V~   90 (124)
T cd08680          11 SGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVDVC   90 (124)
T ss_pred             CCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEEEE
Confidence            34678999999999999988 7889999999982      2368999999999999999999998753   249999999


Q ss_pred             EcCCCCCCCeeEEEEEeCcccccc
Q 031185           73 DKDRFKADDKMGKAYLNLQPIISA   96 (164)
Q Consensus        73 d~~~~~~d~~lG~~~i~l~~l~~~   96 (164)
                      +.+.++++++||.+.++|.++...
T Consensus        91 ~~~~~~~~~~lG~~~i~L~~~~~~  114 (124)
T cd08680          91 SVGPDQQEECLGGAQISLADFESS  114 (124)
T ss_pred             eCCCCCceeEEEEEEEEhhhccCC
Confidence            999998999999999999988444

Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom

>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin

Probab=99.84  E-value=3.3e-20  Score=125.88  Aligned_cols=91  Identities=26%  Similarity=0.429  Sum_probs=81.4

Q ss_pred             EEEEEEEEeecCCCCC-CC--------------CCCcEEEEEECCEEEEeeeeeCCCCCeEeceEEEEeeCC--CceEEE
Q 031185            7 QLKVTVVQGKRLVIRD-FK--------------SSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEP--VGVLSL   69 (164)
Q Consensus         7 ~L~v~i~~a~~L~~~~-~~--------------~~dpyv~v~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~--~~~L~v   69 (164)
                      .|.|+|++|++|+.++ .+              .+||||++.+++++.+|++++++.||.|||+|.|.+..+  ...|.+
T Consensus         1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~   80 (151)
T cd04018           1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKI   80 (151)
T ss_pred             CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEE
Confidence            3789999999999988 43              589999999999999999999999999999999997543  358999


Q ss_pred             EEEEcCCCCCCCeeEEEEEeCcccccce
Q 031185           70 EVFDKDRFKADDKMGKAYLNLQPIISAA   97 (164)
Q Consensus        70 ~v~d~~~~~~d~~lG~~~i~l~~l~~~~   97 (164)
                      +|||++..++|++||++.+++.++....
T Consensus        81 ~v~D~d~~~~dd~iG~~~l~l~~l~~~~  108 (151)
T cd04018          81 QIRDWDRVGNDDVIGTHFIDLSKISNSG  108 (151)
T ss_pred             EEEECCCCCCCCEEEEEEEeHHHhccCC
Confidence            9999999999999999999999887754

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family

Probab=99.84  E-value=2.2e-20  Score=122.42  Aligned_cols=101  Identities=19%  Similarity=0.268  Sum_probs=84.6

Q ss_pred             cceEEEEEEEEeecCCCCCCCCCCcEEEEEECC-----EEEEeeeeeCCCCCeEeceEEEEeeCCC--ceEEEEEEEcCC
Q 031185            4 PFGQLKVTVVQGKRLVIRDFKSSDPYVVLKLGN-----QMAKTKVINSCLNPVWNEEHSLSLTEPV--GVLSLEVFDKDR   76 (164)
Q Consensus         4 ~~~~L~v~i~~a~~L~~~~~~~~dpyv~v~~~~-----~~~~T~~~~~t~~P~w~e~~~f~~~~~~--~~L~v~v~d~~~   76 (164)
                      ..+.|.|+|++|+||+..+.+.+||||++++..     .+++|++++++.+|.|||+|.|.+....  ..|.++|||++.
T Consensus        10 ~~~~L~V~Vi~ar~L~~~~~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~~   89 (119)
T cd08685          10 QNRKLTLHVLEAKGLRSTNSGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKLS   89 (119)
T ss_pred             cCCEEEEEEEEEECCCCCCCCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCCC
Confidence            357899999999999888777899999999943     3578999999999999999999986532  378899999988


Q ss_pred             CC-CCCeeEEEEEeCcccccceeeeEEEE
Q 031185           77 FK-ADDKMGKAYLNLQPIISAARLRHLVH  104 (164)
Q Consensus        77 ~~-~d~~lG~~~i~l~~l~~~~~~~~~~~  104 (164)
                      .. ++++||.+.+++.++..+.....||.
T Consensus        90 ~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~  118 (119)
T cd08685          90 KSRDSGLLGCMSFGVKSIVNQKEISGWYY  118 (119)
T ss_pred             CcCCCEEEEEEEecHHHhccCccccceEe
Confidence            75 47899999999999976655556654

This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho

>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4

Probab=99.84  E-value=2.8e-20  Score=128.07  Aligned_cols=105  Identities=28%  Similarity=0.366  Sum_probs=90.8

Q ss_pred             cceEEEEEEEEeecCCCCC-CCCCCcEEEEEEC-----CEEEEeeeeeCCCCCeEeceEEEEeeCC----CceEEEEEEE
Q 031185            4 PFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLG-----NQMAKTKVINSCLNPVWNEEHSLSLTEP----VGVLSLEVFD   73 (164)
Q Consensus         4 ~~~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~-----~~~~~T~~~~~t~~P~w~e~~~f~~~~~----~~~L~v~v~d   73 (164)
                      +.|.|.|+|++|+||+..+ .+.+||||++++.     ...++|++++++.||.|||+|.|.+...    ...|.|+|||
T Consensus        25 ~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d  104 (162)
T cd04020          25 STGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWD  104 (162)
T ss_pred             CCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEe
Confidence            6689999999999999998 8899999999882     3568999999999999999999985422    2379999999


Q ss_pred             cCCCCCCCeeEEEEEeCcccccceeeeEEEEecCC
Q 031185           74 KDRFKADDKMGKAYLNLQPIISAARLRHLVHVSSG  108 (164)
Q Consensus        74 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~  108 (164)
                      ++.++++++||++.+++..+........|+.+.+.
T Consensus       105 ~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~~~  139 (162)
T cd04020         105 HDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDSTGE  139 (162)
T ss_pred             CCCCCCCceEEEEEEeCCccccCCCccccccCChH
Confidence            99998899999999999999877777778777644

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin

>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7

Probab=99.84  E-value=5.6e-20  Score=121.54  Aligned_cols=103  Identities=28%  Similarity=0.392  Sum_probs=88.0

Q ss_pred             cceEEEEEEEEeecCCCCC-CCCCCcEEEEEE---CCEEEEeeeeeCCCCCeEeceEEEEeeCC----CceEEEEEEEcC
Q 031185            4 PFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKL---GNQMAKTKVINSCLNPVWNEEHSLSLTEP----VGVLSLEVFDKD   75 (164)
Q Consensus         4 ~~~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~---~~~~~~T~~~~~t~~P~w~e~~~f~~~~~----~~~L~v~v~d~~   75 (164)
                      ..+.|.|+|++|++|+..+ .+.+||||++.+   +....+|++++++.+|.|||+|.|.....    ...|.++|||++
T Consensus        14 ~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d   93 (125)
T cd08386          14 QESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYD   93 (125)
T ss_pred             CCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeCC
Confidence            5678999999999999988 888999999998   34568999999999999999999975332    237999999999


Q ss_pred             CCCCCCeeEEEEEeCcccccceeeeEEEEec
Q 031185           76 RFKADDKMGKAYLNLQPIISAARLRHLVHVS  106 (164)
Q Consensus        76 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~  106 (164)
                      .++++++||++.+++.++........|+.|.
T Consensus        94 ~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~  124 (125)
T cd08386          94 RFSRNDPIGEVSLPLNKVDLTEEQTFWKDLK  124 (125)
T ss_pred             CCcCCcEeeEEEEecccccCCCCcceEEecC
Confidence            9989999999999999988776666776653

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1)

Probab=99.84  E-value=2.6e-19  Score=121.61  Aligned_cols=101  Identities=27%  Similarity=0.417  Sum_probs=82.2

Q ss_pred             EEEEEEEeec--CCCCC-CCCCCcEEEEEE-----CCEEEEeeeeeCCCCCeEeceEEEEeeCCC---------ceEEEE
Q 031185            8 LKVTVVQGKR--LVIRD-FKSSDPYVVLKL-----GNQMAKTKVINSCLNPVWNEEHSLSLTEPV---------GVLSLE   70 (164)
Q Consensus         8 L~v~i~~a~~--L~~~~-~~~~dpyv~v~~-----~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~---------~~L~v~   70 (164)
                      ..++|..|++  |+... .+..||||++++     ..++.+|+++++|.||.|||+|.|.+....         ..|.++
T Consensus         4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~   83 (155)
T cd08690           4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE   83 (155)
T ss_pred             eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence            3455666666  55655 678999999997     245799999999999999999999997552         379999


Q ss_pred             EEEcCCC-CCCCeeEEEEEeCcccccceeeeEEEEecCC
Q 031185           71 VFDKDRF-KADDKMGKAYLNLQPIISAARLRHLVHVSSG  108 (164)
Q Consensus        71 v~d~~~~-~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~  108 (164)
                      |||++.+ ++|++||++.++|+.+........+++|..+
T Consensus        84 V~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~~  122 (155)
T cd08690          84 VYHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLMDG  122 (155)
T ss_pred             EEeCCCcccCCCeeEEEEEEcccccccCcceEEEEhhhC
Confidence            9999986 5799999999999999887776677777655

Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha

>cd04032 C2_Perforin C2 domain of Perforin

Probab=99.83  E-value=9.3e-20  Score=120.30  Aligned_cols=92  Identities=34%  Similarity=0.472  Sum_probs=81.5

Q ss_pred             cceEEEEEEEEeecCCCCC-CCCCCcEEEEEECCEEEEeeeeeCCCCCeEeceEEEEeeC--CCceEEEEEEEcCCCCCC
Q 031185            4 PFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTE--PVGVLSLEVFDKDRFKAD   80 (164)
Q Consensus         4 ~~~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~--~~~~L~v~v~d~~~~~~d   80 (164)
                      ..+.|+|+|++|++|+. + .+.+|||+++++++..++|++++++.||.|||+|.|....  ....|.|+|||++.+++|
T Consensus        26 ~~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~~s~d  104 (127)
T cd04032          26 GLATLTVTVLRATGLWG-DYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDNGWDD  104 (127)
T ss_pred             CcEEEEEEEEECCCCCc-CcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCCCCCC
Confidence            56899999999999974 5 7789999999999889999999999999999999997533  345999999999999999


Q ss_pred             CeeEEEEEeCcccccc
Q 031185           81 DKMGKAYLNLQPIISA   96 (164)
Q Consensus        81 ~~lG~~~i~l~~l~~~   96 (164)
                      ++||++.++|.....+
T Consensus       105 d~IG~~~i~l~~~~~~  120 (127)
T cd04032         105 DLLGTCSVVPEAGVHE  120 (127)
T ss_pred             CeeEEEEEEecCCcee
Confidence            9999999999966543

Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few

>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin

Probab=99.83  E-value=1.8e-19  Score=116.81  Aligned_cols=90  Identities=23%  Similarity=0.393  Sum_probs=79.8

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCcEEEEEECCEEEEeeeeeCCCCCeEeceEEEEeeCCC-----ceEEEEEEEcCCCCCC
Q 031185            6 GQLKVTVVQGKRLVIRDFKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEPV-----GVLSLEVFDKDRFKAD   80 (164)
Q Consensus         6 ~~L~v~i~~a~~L~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~-----~~L~v~v~d~~~~~~d   80 (164)
                      =.|+|+|++|++|+   .+.+||||++++++++++|++++++.+|.|+|+|.|.+..+.     ..|.++|||++.++++
T Consensus         4 ~~l~V~v~~a~~L~---~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~~~~   80 (111)
T cd04011           4 FQVRVRVIEARQLV---GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSLRSD   80 (111)
T ss_pred             EEEEEEEEEcccCC---CCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcccccC
Confidence            35899999999998   468999999999999999999999999999999999976432     3799999999999889


Q ss_pred             CeeEEEEEeCccccccee
Q 031185           81 DKMGKAYLNLQPIISAAR   98 (164)
Q Consensus        81 ~~lG~~~i~l~~l~~~~~   98 (164)
                      ++||++.++++++..+..
T Consensus        81 ~~iG~~~i~l~~v~~~~~   98 (111)
T cd04011          81 TLIGSFKLDVGTVYDQPD   98 (111)
T ss_pred             CccEEEEECCccccCCCC
Confidence            999999999998876633

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins

Probab=99.83  E-value=8.6e-20  Score=118.29  Aligned_cols=100  Identities=23%  Similarity=0.356  Sum_probs=84.5

Q ss_pred             CCCCCcEEEEEECCE-EEEeeeeeCCCCCeEeceEEEEeeCCC-ceEEEEEEEcCCCCCCCeeEEEEEeCcccccceeee
Q 031185           23 FKSSDPYVVLKLGNQ-MAKTKVINSCLNPVWNEEHSLSLTEPV-GVLSLEVFDKDRFKADDKMGKAYLNLQPIISAARLR  100 (164)
Q Consensus        23 ~~~~dpyv~v~~~~~-~~~T~~~~~t~~P~w~e~~~f~~~~~~-~~L~v~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~  100 (164)
                      .|.+||||.+.++++ ..+|++++++.||.|||.|.|.+.... ..|.|.|||++.+ ++++||.+.++|+++.....  
T Consensus        10 ~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l~~~~~--   86 (111)
T cd04052          10 TGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDR-HDPVLGSVSISLNDLIDATS--   86 (111)
T ss_pred             CCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCC-CCCeEEEEEecHHHHHhhhh--
Confidence            688999999999875 579999999999999999999987653 4799999999999 89999999999998754311  


Q ss_pred             EEEEecCCceeeEEEeeCCCceeeccceEEEECCEEEeeeeEEEceeeeeeEEEEEEEEeC
Q 031185          101 HLVHVSSGETPLRKIIPDSENCLARESSIICINGEVVQNVWLRLCEVESGEIELKVKIVDA  161 (164)
Q Consensus       101 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~G~v~~~l~~~~~  161 (164)
                                                          ..+.|++|.+.+.|+|+++++|.|+
T Consensus        87 ------------------------------------~~~~w~~L~~~~~G~i~~~~~~~p~  111 (111)
T cd04052          87 ------------------------------------VGQQWFPLSGNGQGRIRISALWKPV  111 (111)
T ss_pred             ------------------------------------ccceeEECCCCCCCEEEEEEEEecC
Confidence                                                1245778777788999999999985

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16

Probab=99.83  E-value=9.8e-20  Score=120.24  Aligned_cols=103  Identities=24%  Similarity=0.307  Sum_probs=87.0

Q ss_pred             CcceEEEEEEEEeecCCCCC-CCCCCcEEEEEEC---CEEEEeeeeeCCCCCeEeceEEEE-eeCC---CceEEEEEEEc
Q 031185            3 QPFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLG---NQMAKTKVINSCLNPVWNEEHSLS-LTEP---VGVLSLEVFDK   74 (164)
Q Consensus         3 ~~~~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~---~~~~~T~~~~~t~~P~w~e~~~f~-~~~~---~~~L~v~v~d~   74 (164)
                      ...+.|.|+|++|+||+..+ .+.+||||++.+.   ..+.+|++.++ .||.|||+|.|+ +...   ...|.++|||+
T Consensus        13 ~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~   91 (124)
T cd08389          13 PSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYGV   91 (124)
T ss_pred             CCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEEEC
Confidence            34578999999999999998 7889999998772   35688999887 999999999998 5432   23899999999


Q ss_pred             CCCCCCCeeEEEEEeCcccccceeeeEEEEec
Q 031185           75 DRFKADDKMGKAYLNLQPIISAARLRHLVHVS  106 (164)
Q Consensus        75 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~  106 (164)
                      +.++++++||++.++|+++..+.....|+.|.
T Consensus        92 ~~~~~~~~lG~~~i~L~~l~~~~~~~~w~~L~  123 (124)
T cd08389          92 ERMRKERLIGEKVVPLSQLNLEGETTVWLTLE  123 (124)
T ss_pred             CCcccCceEEEEEEeccccCCCCCceEEEeCC
Confidence            99999999999999999997777777776664

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17

Probab=99.83  E-value=2.2e-19  Score=118.34  Aligned_cols=104  Identities=22%  Similarity=0.290  Sum_probs=90.0

Q ss_pred             CcceEEEEEEEEeecCCCCC--CCCCCcEEEEEEC---CEEEEeeeeeCCCCCeEeceEEEEeeCC---CceEEEEEEEc
Q 031185            3 QPFGQLKVTVVQGKRLVIRD--FKSSDPYVVLKLG---NQMAKTKVINSCLNPVWNEEHSLSLTEP---VGVLSLEVFDK   74 (164)
Q Consensus         3 ~~~~~L~v~i~~a~~L~~~~--~~~~dpyv~v~~~---~~~~~T~~~~~t~~P~w~e~~~f~~~~~---~~~L~v~v~d~   74 (164)
                      ...+.|.|+|++|++|+..+  .+.+||||++++.   ....+|++++++.+|.|+|.|.|.+...   ...|.|+|||.
T Consensus        11 ~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~   90 (123)
T cd08390          11 LEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYDV   90 (123)
T ss_pred             CCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEEEC
Confidence            45678999999999999886  6789999999983   3457899999999999999999998753   24799999999


Q ss_pred             CCCCCCCeeEEEEEeCcccccceeeeEEEEec
Q 031185           75 DRFKADDKMGKAYLNLQPIISAARLRHLVHVS  106 (164)
Q Consensus        75 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~  106 (164)
                      +..+++++||++.++|.++........|++|.
T Consensus        91 ~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~L~  122 (123)
T cd08390          91 DRFSRHCIIGHVLFPLKDLDLVKGGVVWRDLE  122 (123)
T ss_pred             CcCCCCcEEEEEEEeccceecCCCceEEEeCC
Confidence            99888999999999999998887777777764

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat

>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.83  E-value=1.7e-19  Score=118.89  Aligned_cols=103  Identities=26%  Similarity=0.367  Sum_probs=87.0

Q ss_pred             CcceEEEEEEEEeecCCCCC--CCCCCcEEEEEECC-----EEEEeeeeeCCCCCeEeceEEEEeeCC---CceEEEEEE
Q 031185            3 QPFGQLKVTVVQGKRLVIRD--FKSSDPYVVLKLGN-----QMAKTKVINSCLNPVWNEEHSLSLTEP---VGVLSLEVF   72 (164)
Q Consensus         3 ~~~~~L~v~i~~a~~L~~~~--~~~~dpyv~v~~~~-----~~~~T~~~~~t~~P~w~e~~~f~~~~~---~~~L~v~v~   72 (164)
                      ...+.|.|+|++|+||+..+  .+.+||||++++..     ..++|++++++.+|.|||+|.|.+...   ...|.++||
T Consensus        11 ~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~   90 (123)
T cd08521          11 YKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVW   90 (123)
T ss_pred             CCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEEE
Confidence            45688999999999999877  57899999999831     458999999999999999999998753   348999999


Q ss_pred             EcCCCCCCCeeEEEEEeCcccccceeeeEEEEe
Q 031185           73 DKDRFKADDKMGKAYLNLQPIISAARLRHLVHV  105 (164)
Q Consensus        73 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l  105 (164)
                      |++.++++++||++.+++.++..+.....||.|
T Consensus        91 d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l  123 (123)
T cd08521          91 HHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL  123 (123)
T ss_pred             eCCCCcCCceeeEEEEecccccccCCCccEEEC
Confidence            999998999999999999998666555666543

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into

>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins

Probab=99.82  E-value=3.7e-19  Score=115.96  Aligned_cols=100  Identities=34%  Similarity=0.533  Sum_probs=87.8

Q ss_pred             EEEEEEEeecCCCCC-CCCCCcEEEEEECC-EEEEeeeeeCCCCCeEeceEEEEeeCC-CceEEEEEEEcCCCCCCCeeE
Q 031185            8 LKVTVVQGKRLVIRD-FKSSDPYVVLKLGN-QMAKTKVINSCLNPVWNEEHSLSLTEP-VGVLSLEVFDKDRFKADDKMG   84 (164)
Q Consensus         8 L~v~i~~a~~L~~~~-~~~~dpyv~v~~~~-~~~~T~~~~~t~~P~w~e~~~f~~~~~-~~~L~v~v~d~~~~~~d~~lG   84 (164)
                      |+|+|++|++|+..+ .+.+||||++.+.+ ..++|+++.++.+|.|+|+|.|.+... ...+.++|||++..+++++||
T Consensus         1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~iG   80 (115)
T cd04040           1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDLLG   80 (115)
T ss_pred             CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCceE
Confidence            578999999999888 78899999999965 448999999999999999999998764 458999999999988899999


Q ss_pred             EEEEeCcccccceeeeEEEEecC
Q 031185           85 KAYLNLQPIISAARLRHLVHVSS  107 (164)
Q Consensus        85 ~~~i~l~~l~~~~~~~~~~~l~~  107 (164)
                      ++.+++.++..+...+.|++|..
T Consensus        81 ~~~~~l~~l~~~~~~~~~~~L~~  103 (115)
T cd04040          81 SAYIDLSDLEPEETTELTLPLDG  103 (115)
T ss_pred             EEEEEHHHcCCCCcEEEEEECcC
Confidence            99999999988777777777764

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.82  E-value=2.7e-19  Score=121.57  Aligned_cols=99  Identities=33%  Similarity=0.523  Sum_probs=83.5

Q ss_pred             CCcceEEEEEEEEeecCCCCC-CCCCCcEEEEEECC-----------------------------EEEEeeeeeCCCCCe
Q 031185            2 RQPFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGN-----------------------------QMAKTKVINSCLNPV   51 (164)
Q Consensus         2 ~~~~~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~~-----------------------------~~~~T~~~~~t~~P~   51 (164)
                      .++.+.|.|+|++|++|+..+ .|.+||||++.+..                             ..++|+++.++.+|.
T Consensus        24 ~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~  103 (153)
T cd08676          24 EPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPV  103 (153)
T ss_pred             CCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCc
Confidence            457899999999999999999 88999999999853                             136899999999999


Q ss_pred             EeceEEEEeeCC-CceEEEEEEEcCCCCCCCeeEEEEEeCcccccceeeeEEEEe
Q 031185           52 WNEEHSLSLTEP-VGVLSLEVFDKDRFKADDKMGKAYLNLQPIISAARLRHLVHV  105 (164)
Q Consensus        52 w~e~~~f~~~~~-~~~L~v~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l  105 (164)
                      |+|+|.|.+... ...|.|+|||++    +++||++.++++++.. ...+.||.|
T Consensus       104 WnE~F~f~v~~~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~~-~~~d~W~~L  153 (153)
T cd08676         104 WNETFRFEVEDVSNDQLHLDIWDHD----DDFLGCVNIPLKDLPS-CGLDSWFKL  153 (153)
T ss_pred             cccEEEEEeccCCCCEEEEEEEecC----CCeEEEEEEEHHHhCC-CCCCCeEeC
Confidence            999999999764 348999999997    8899999999999873 334555543

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy

>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family

Probab=99.82  E-value=1.4e-18  Score=116.86  Aligned_cols=101  Identities=19%  Similarity=0.274  Sum_probs=86.6

Q ss_pred             cceEEEEEEEEeecCCCCCCCCCCcEEEEEECCEE-EEeeeeeCCCCCeEeceEEEEeeCCCceEEEEEEEcCCC----C
Q 031185            4 PFGQLKVTVVQGKRLVIRDFKSSDPYVVLKLGNQM-AKTKVINSCLNPVWNEEHSLSLTEPVGVLSLEVFDKDRF----K   78 (164)
Q Consensus         4 ~~~~L~v~i~~a~~L~~~~~~~~dpyv~v~~~~~~-~~T~~~~~t~~P~w~e~~~f~~~~~~~~L~v~v~d~~~~----~   78 (164)
                      ....|.|.|++|++|+.++    +|||.+.+++.. .+|+++.++.+|.|+|.|.|........|.|.||..+..    .
T Consensus         9 ~~~sL~v~V~EAk~Lp~~~----~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~~~~l~v~v~k~~~~~~~~~   84 (146)
T cd04013           9 TENSLKLWIIEAKGLPPKK----RYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPPVSVITVNLYRESDKKKKKD   84 (146)
T ss_pred             EEEEEEEEEEEccCCCCcC----CceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCcccEEEEEEEEccCcccccc
Confidence            3567999999999998754    899999999888 699999999999999999998766666899999865532    1


Q ss_pred             CCCeeEEEEEeCcccccceeeeEEEEecCC
Q 031185           79 ADDKMGKAYLNLQPIISAARLRHLVHVSSG  108 (164)
Q Consensus        79 ~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~  108 (164)
                      ++++||.+.|++.++..+...+.||++...
T Consensus        85 ~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~  114 (146)
T cd04013          85 KSQLIGTVNIPVTDVSSRQFVEKWYPVSTP  114 (146)
T ss_pred             CCcEEEEEEEEHHHhcCCCcccEEEEeecC
Confidence            578999999999999988888889888654

SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas

>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase

Probab=99.81  E-value=1.9e-18  Score=114.21  Aligned_cols=90  Identities=33%  Similarity=0.493  Sum_probs=79.3

Q ss_pred             eEEEEEEEEeecCCCCC-CCCCCcEEEEEECCE-EEEeeeeeCCCCCeEeceEEEEeeCCCceEEEEEEEcCCCCCCCee
Q 031185            6 GQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGNQ-MAKTKVINSCLNPVWNEEHSLSLTEPVGVLSLEVFDKDRFKADDKM   83 (164)
Q Consensus         6 ~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~~~-~~~T~~~~~t~~P~w~e~~~f~~~~~~~~L~v~v~d~~~~~~d~~l   83 (164)
                      .+|.|+|.+|+ |...+ .+.+||||.+++++. .++|++..++.+|.|+|.|.|.+.. ...|.++|||++..+.+++|
T Consensus         2 ~~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~~-~~~l~~~V~d~~~~~~~~~i   79 (125)
T cd04021           2 SQLQITVESAK-LKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVTP-QSTLEFKVWSHHTLKADVLL   79 (125)
T ss_pred             ceEEEEEEeeE-CCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeCC-CCEEEEEEEeCCCCCCCcEE
Confidence            46899999998 54555 778999999999877 7999999999999999999999864 36999999999999899999


Q ss_pred             EEEEEeCcccccce
Q 031185           84 GKAYLNLQPIISAA   97 (164)
Q Consensus        84 G~~~i~l~~l~~~~   97 (164)
                      |++.++|.++....
T Consensus        80 G~~~i~l~~l~~~~   93 (125)
T cd04021          80 GEASLDLSDILKNH   93 (125)
T ss_pred             EEEEEEHHHhHhhc
Confidence            99999999887653

E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e

>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs)

Probab=99.80  E-value=5.9e-19  Score=118.36  Aligned_cols=101  Identities=23%  Similarity=0.356  Sum_probs=88.1

Q ss_pred             EEEEEEEeecCCCCCCCCCCcEEEEEEC----CEEEEeeeeeCCCCCeEeceEEEEeeCC----------------CceE
Q 031185            8 LKVTVVQGKRLVIRDFKSSDPYVVLKLG----NQMAKTKVINSCLNPVWNEEHSLSLTEP----------------VGVL   67 (164)
Q Consensus         8 L~v~i~~a~~L~~~~~~~~dpyv~v~~~----~~~~~T~~~~~t~~P~w~e~~~f~~~~~----------------~~~L   67 (164)
                      |.|+|++|++|+....+.+|||++++++    ...++|+++.++.+|.|+|+|.|.+...                ...|
T Consensus         1 L~V~Vi~A~~L~~~~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~l   80 (137)
T cd08675           1 LSVRVLECRDLALKSNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSEL   80 (137)
T ss_pred             CEEEEEEccCCCcccCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccEE
Confidence            5799999999987655789999999997    6779999999999999999999998764                2389


Q ss_pred             EEEEEEcCCCCCCCeeEEEEEeCcccccceeeeEEEEecCC
Q 031185           68 SLEVFDKDRFKADDKMGKAYLNLQPIISAARLRHLVHVSSG  108 (164)
Q Consensus        68 ~v~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~  108 (164)
                      .++|||++..+++++||++.+++.++........|+.|...
T Consensus        81 ~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~  121 (137)
T cd08675          81 RVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPR  121 (137)
T ss_pred             EEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEecCCc
Confidence            99999999988899999999999999877777778777644

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin

>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.80  E-value=6.7e-19  Score=117.62  Aligned_cols=93  Identities=28%  Similarity=0.389  Sum_probs=82.1

Q ss_pred             cceEEEEEEEEeecCCCCC-CCCCCcEEEEEEC-------CEEEEeeeeeCCCCCeEeceEEEEeeCC-----CceEEEE
Q 031185            4 PFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLG-------NQMAKTKVINSCLNPVWNEEHSLSLTEP-----VGVLSLE   70 (164)
Q Consensus         4 ~~~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~-------~~~~~T~~~~~t~~P~w~e~~~f~~~~~-----~~~L~v~   70 (164)
                      ..+.|.|+|++|++|+..+ .+.+||||++++.       ...++|++++++.||.|||+|.|.+...     ...|.++
T Consensus        14 ~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~   93 (133)
T cd04009          14 SEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFT   93 (133)
T ss_pred             CCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEE
Confidence            4578999999999999988 7899999999984       3468999999999999999999998752     2489999


Q ss_pred             EEEcCCCCCCCeeEEEEEeCcccccc
Q 031185           71 VFDKDRFKADDKMGKAYLNLQPIISA   96 (164)
Q Consensus        71 v~d~~~~~~d~~lG~~~i~l~~l~~~   96 (164)
                      |||++.++++++||++.++|+++...
T Consensus        94 V~d~d~~~~d~~iG~~~i~l~~l~~~  119 (133)
T cd04009          94 VKDYDLLGSNDFEGEAFLPLNDIPGV  119 (133)
T ss_pred             EEecCCCCCCcEeEEEEEeHHHCCcc
Confidence            99999998899999999999988654

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s

>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs)

Probab=99.80  E-value=2.8e-18  Score=112.03  Aligned_cols=95  Identities=26%  Similarity=0.389  Sum_probs=74.4

Q ss_pred             EEEEEEEeecCCCCCCCCCCcEEEEEECCEE-EEeeeeeCCCCCeEeceEEEEeeCC---CceEEEEEEEcCCCCCCCee
Q 031185            8 LKVTVVQGKRLVIRDFKSSDPYVVLKLGNQM-AKTKVINSCLNPVWNEEHSLSLTEP---VGVLSLEVFDKDRFKADDKM   83 (164)
Q Consensus         8 L~v~i~~a~~L~~~~~~~~dpyv~v~~~~~~-~~T~~~~~t~~P~w~e~~~f~~~~~---~~~L~v~v~d~~~~~~d~~l   83 (164)
                      |.|+|++|++|+..  +.+||||.+++++.. ++|+++++ .+|.|||+|.|.+...   ...|.+.+||.+....+.++
T Consensus         2 L~v~vi~a~~l~~~--~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~~~   78 (117)
T cd08383           2 LRLRILEAKNLPSK--GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRDIVI   78 (117)
T ss_pred             eEEEEEEecCCCcC--CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCeeEE
Confidence            78999999999876  789999999998754 79999999 9999999999998873   23788889998876566667


Q ss_pred             EEEEEeCcccccceeeeEEEEecC
Q 031185           84 GKAYLNLQPIISAARLRHLVHVSS  107 (164)
Q Consensus        84 G~~~i~l~~l~~~~~~~~~~~l~~  107 (164)
                      |.+.+  ..+..+...+.|++|.+
T Consensus        79 g~v~l--~~~~~~~~~~~w~~L~~  100 (117)
T cd08383          79 GKVAL--SKLDLGQGKDEWFPLTP  100 (117)
T ss_pred             EEEEe--cCcCCCCcceeEEECcc
Confidence            76554  44444555556666653

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2

>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1)

Probab=99.80  E-value=4.6e-18  Score=113.71  Aligned_cols=89  Identities=26%  Similarity=0.455  Sum_probs=76.0

Q ss_pred             EEEEEEEEeecCCCCC-CCCCCcEEEEEEC-------------CEEEEeeeeeCCCCCeE-eceEEEEeeCCCceEEEEE
Q 031185            7 QLKVTVVQGKRLVIRD-FKSSDPYVVLKLG-------------NQMAKTKVINSCLNPVW-NEEHSLSLTEPVGVLSLEV   71 (164)
Q Consensus         7 ~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~-------------~~~~~T~~~~~t~~P~w-~e~~~f~~~~~~~~L~v~v   71 (164)
                      ...|.+++|++|+ ++ .|.+|||+++.+.             .+.++|++++++.||.| ||+|.|.+.. .+.|.++|
T Consensus         2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~-~~~L~v~V   79 (137)
T cd08691           2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLP-TDVLEIEV   79 (137)
T ss_pred             EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCC-CCEEEEEE
Confidence            4678999999998 67 8999999999993             23689999999999999 9999999864 36899999


Q ss_pred             EEcCCCCC---CCeeEEEEEeCcccccce
Q 031185           72 FDKDRFKA---DDKMGKAYLNLQPIISAA   97 (164)
Q Consensus        72 ~d~~~~~~---d~~lG~~~i~l~~l~~~~   97 (164)
                      ||++..++   +++||++.+++.++....
T Consensus        80 ~D~~~~~~~~~~d~lG~~~i~l~~l~~~~  108 (137)
T cd08691          80 KDKFAKSRPIIRRFLGKLSIPVQRLLERH  108 (137)
T ss_pred             EecCCCCCccCCceEEEEEEEHHHhcccc
Confidence            99765433   789999999999997764

NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C

>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain

Probab=99.80  E-value=3.1e-19  Score=119.24  Aligned_cols=101  Identities=32%  Similarity=0.413  Sum_probs=84.3

Q ss_pred             CcceEEEEEEEEeecCCCCC-CCCCCcEEEEEECC-----EEEEeeeeeCCCCCeEeceEEEEeeCC---CceEEEEEEE
Q 031185            3 QPFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGN-----QMAKTKVINSCLNPVWNEEHSLSLTEP---VGVLSLEVFD   73 (164)
Q Consensus         3 ~~~~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~~-----~~~~T~~~~~t~~P~w~e~~~f~~~~~---~~~L~v~v~d   73 (164)
                      ...+.|.|+|++|++|+..+ .+.+||||++.+.+     ...+|++++++.+|.|||+|.|.+...   ...|.++|||
T Consensus        10 ~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V~d   89 (133)
T cd08384          10 TQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITVWD   89 (133)
T ss_pred             CCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEEEe
Confidence            35689999999999999988 88999999999842     357999999999999999999998753   2489999999


Q ss_pred             cCCCCCCCeeEEEEEeCcccccceeeeEEEEe
Q 031185           74 KDRFKADDKMGKAYLNLQPIISAARLRHLVHV  105 (164)
Q Consensus        74 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l  105 (164)
                      ++..+++++||.+.+++..  .+.....|+.+
T Consensus        90 ~d~~~~~~~lG~~~i~l~~--~~~~~~~W~~~  119 (133)
T cd08384          90 KDIGKSNDYIGGLQLGINA--KGERLRHWLDC  119 (133)
T ss_pred             CCCCCCccEEEEEEEecCC--CCchHHHHHHH
Confidence            9998889999999999985  23334455544

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai

>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin

Probab=99.80  E-value=2e-18  Score=114.01  Aligned_cols=89  Identities=31%  Similarity=0.524  Sum_probs=79.0

Q ss_pred             EEEEEEEEeecCCCCC-CCCCCcEEEEEECCEE--EEeeeeeCCCCCeEeceEEEEeeCCC-ceEEEEEEEcCCCCCCCe
Q 031185            7 QLKVTVVQGKRLVIRD-FKSSDPYVVLKLGNQM--AKTKVINSCLNPVWNEEHSLSLTEPV-GVLSLEVFDKDRFKADDK   82 (164)
Q Consensus         7 ~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~~~~--~~T~~~~~t~~P~w~e~~~f~~~~~~-~~L~v~v~d~~~~~~d~~   82 (164)
                      .|+|+|++|++|+..+ .+.+||||++++++..  .+|.+++++.+|.|||+|.|.+..+. ..|.++|||++.+++|++
T Consensus         1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd~   80 (124)
T cd04037           1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDDL   80 (124)
T ss_pred             CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCce
Confidence            3789999999999988 8899999999998765  57888899999999999999876543 489999999999989999


Q ss_pred             eEEEEEeCccccc
Q 031185           83 MGKAYLNLQPIIS   95 (164)
Q Consensus        83 lG~~~i~l~~l~~   95 (164)
                      ||++.+++++...
T Consensus        81 iG~~~i~l~~~~~   93 (124)
T cd04037          81 IGETVIDLEDRFF   93 (124)
T ss_pred             eEEEEEeeccccc
Confidence            9999999997754

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04048 C2A_Copine C2 domain first repeat in Copine

Probab=99.79  E-value=1.8e-18  Score=113.62  Aligned_cols=97  Identities=27%  Similarity=0.440  Sum_probs=83.6

Q ss_pred             EEEeecCCCCC-CCCCCcEEEEEECCE-------EEEeeeeeCCCCCeEeceEEEEeeC-CCceEEEEEEEcCC----CC
Q 031185           12 VVQGKRLVIRD-FKSSDPYVVLKLGNQ-------MAKTKVINSCLNPVWNEEHSLSLTE-PVGVLSLEVFDKDR----FK   78 (164)
Q Consensus        12 i~~a~~L~~~~-~~~~dpyv~v~~~~~-------~~~T~~~~~t~~P~w~e~~~f~~~~-~~~~L~v~v~d~~~----~~   78 (164)
                      .++|++|+..+ .+.+||||++++...       .++|++++++.||.|+|+|.|.+.. ....|.++|||++.    .+
T Consensus         6 ~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~~   85 (120)
T cd04048           6 SISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDLS   85 (120)
T ss_pred             EEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCCC
Confidence            47899999988 889999999999543       4899999999999999999998653 33489999999997    78


Q ss_pred             CCCeeEEEEEeCcccccceeeeEEEEecCC
Q 031185           79 ADDKMGKAYLNLQPIISAARLRHLVHVSSG  108 (164)
Q Consensus        79 ~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~  108 (164)
                      ++++||++.+++.++........++.|..|
T Consensus        86 ~~d~iG~~~i~l~~l~~~~~~~~~~~l~~~  115 (120)
T cd04048          86 DHDFLGEAECTLGEIVSSPGQKLTLPLKGG  115 (120)
T ss_pred             CCcEEEEEEEEHHHHhcCCCcEEEEEccCC
Confidence            999999999999999988777777777554

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma

>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4

Probab=99.79  E-value=9e-19  Score=117.44  Aligned_cols=101  Identities=28%  Similarity=0.387  Sum_probs=84.4

Q ss_pred             cceEEEEEEEEeecCCCCC-CCCCCcEEEEEEC--C---EEEEeeeeeCCCCCeEeceEEEEeeCC---CceEEEEEEEc
Q 031185            4 PFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLG--N---QMAKTKVINSCLNPVWNEEHSLSLTEP---VGVLSLEVFDK   74 (164)
Q Consensus         4 ~~~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~--~---~~~~T~~~~~t~~P~w~e~~~f~~~~~---~~~L~v~v~d~   74 (164)
                      ..+.|.|+|++|++|+..+ .+.+||||++.+.  +   ...+|++++++.||.|+|+|.|.+...   ...|.++|||+
T Consensus        13 ~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d~   92 (136)
T cd08404          13 TTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLDS   92 (136)
T ss_pred             CCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEEEC
Confidence            4578999999999999998 8899999999983  2   247899999999999999999998642   23789999999


Q ss_pred             CCCCCCCeeEEEEEeCcccccceeeeEEEEec
Q 031185           75 DRFKADDKMGKAYLNLQPIISAARLRHLVHVS  106 (164)
Q Consensus        75 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~  106 (164)
                      +.++++++||++.+++..  .......|+.+.
T Consensus        93 d~~~~~~~iG~~~~~~~~--~~~~~~~w~~l~  122 (136)
T cd08404          93 DRVTKNEVIGRLVLGPKA--SGSGGHHWKEVC  122 (136)
T ss_pred             CCCCCCccEEEEEECCcC--CCchHHHHHHHH
Confidence            999999999999999988  344455665553

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s

>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12

Probab=99.78  E-value=1.2e-18  Score=116.60  Aligned_cols=99  Identities=24%  Similarity=0.289  Sum_probs=81.4

Q ss_pred             cceEEEEEEEEeecCCCCC-CCCCCcEEEEEECC-----EEEEeeeeeCCCCCeEeceEEEEeeCC---CceEEEEEEEc
Q 031185            4 PFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGN-----QMAKTKVINSCLNPVWNEEHSLSLTEP---VGVLSLEVFDK   74 (164)
Q Consensus         4 ~~~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~~-----~~~~T~~~~~t~~P~w~e~~~f~~~~~---~~~L~v~v~d~   74 (164)
                      ..+.|.|+|++|+||+..+ .+.+||||++++..     .+.+|++++++.||.|||+|.|.+...   ...|.|+|||+
T Consensus        13 ~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~~   92 (136)
T cd08406          13 TAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTVAES   92 (136)
T ss_pred             CCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEEEeC
Confidence            4578999999999999988 88999999999932     256899999999999999999998753   23899999999


Q ss_pred             CCCCCCCeeEEEEEeCcccccceeeeEEEE
Q 031185           75 DRFKADDKMGKAYLNLQPIISAARLRHLVH  104 (164)
Q Consensus        75 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~  104 (164)
                      +.++++++||++.+....  .+...++|..
T Consensus        93 d~~~~~~~iG~v~lg~~~--~g~~~~hW~~  120 (136)
T cd08406          93 TEDGKTPNVGHVIIGPAA--SGMGLSHWNQ  120 (136)
T ss_pred             CCCCCCCeeEEEEECCCC--CChhHHHHHH
Confidence            999999999999997653  3333444533

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.78  E-value=7.3e-19  Score=154.30  Aligned_cols=104  Identities=21%  Similarity=0.418  Sum_probs=89.3

Q ss_pred             CCCcceEEEEEEEEeecCCCCCCCCCCcEEEEEECCE-EEEeeeeeCCCCCeEeceEEEEeeCCC--ceEEEEEEEcCCC
Q 031185            1 MRQPFGQLKVTVVQGKRLVIRDFKSSDPYVVLKLGNQ-MAKTKVINSCLNPVWNEEHSLSLTEPV--GVLSLEVFDKDRF   77 (164)
Q Consensus         1 ~~~~~~~L~v~i~~a~~L~~~~~~~~dpyv~v~~~~~-~~~T~~~~~t~~P~w~e~~~f~~~~~~--~~L~v~v~d~~~~   77 (164)
                      |....|.|.|+|++|.||. .+.+.+||||++.++++ +.+|++++++.||.|||+|.|.+..+.  ..|.++|||++.+
T Consensus      1975 ~~~~~G~L~V~V~~a~nl~-~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~f 2053 (2102)
T PLN03200       1975 LQCLPGSLTVTIKRGNNLK-QSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNTF 2053 (2102)
T ss_pred             HhhCCcceEEEEeeccccc-cccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCcc
Confidence            4567899999999999998 33789999999999965 789999999999999999998877764  5799999999999


Q ss_pred             CCCCeeEEEEEeCcccccceeeeEEEEec
Q 031185           78 KADDKMGKAYLNLQPIISAARLRHLVHVS  106 (164)
Q Consensus        78 ~~d~~lG~~~i~l~~l~~~~~~~~~~~l~  106 (164)
                      + ++.+|.+.|++.++..++....||.|.
T Consensus      2054 ~-kd~~G~~~i~l~~vv~~~~~~~~~~L~ 2081 (2102)
T PLN03200       2054 G-KSSLGKVTIQIDRVVMEGTYSGEYSLN 2081 (2102)
T ss_pred             C-CCCCceEEEEHHHHhcCceeeeeeecC
Confidence            5 559999999999998876665555554

>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma

Probab=99.78  E-value=2.9e-18  Score=114.22  Aligned_cols=100  Identities=37%  Similarity=0.501  Sum_probs=85.3

Q ss_pred             eEEEEEEEEeecCCCCC-CCCCCcEEEEEEC-----CEEEEeeeeeCCCCCeEeceEEEEeeCC--CceEEEEEEEcCCC
Q 031185            6 GQLKVTVVQGKRLVIRD-FKSSDPYVVLKLG-----NQMAKTKVINSCLNPVWNEEHSLSLTEP--VGVLSLEVFDKDRF   77 (164)
Q Consensus         6 ~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~-----~~~~~T~~~~~t~~P~w~e~~~f~~~~~--~~~L~v~v~d~~~~   77 (164)
                      +.|.|+|++|++|+..+ .+.+||||.+.+.     ...++|++++++.+|.|+|+|.|.+...  ...|.++|||++..
T Consensus        13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~~   92 (131)
T cd04026          13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDRT   92 (131)
T ss_pred             CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCCC
Confidence            78999999999999888 7889999999995     2568999999999999999999998764  34899999999988


Q ss_pred             CCCCeeEEEEEeCcccccceeeeEEEEec
Q 031185           78 KADDKMGKAYLNLQPIISAARLRHLVHVS  106 (164)
Q Consensus        78 ~~d~~lG~~~i~l~~l~~~~~~~~~~~l~  106 (164)
                      +++++||++.+++.++... ....|+.|.
T Consensus        93 ~~~~~iG~~~~~l~~l~~~-~~~~w~~L~  120 (131)
T cd04026          93 TRNDFMGSLSFGVSELIKM-PVDGWYKLL  120 (131)
T ss_pred             CCcceeEEEEEeHHHhCcC-ccCceEECc
Confidence            8899999999999988754 344454443

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd

>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.78  E-value=3.4e-18  Score=133.33  Aligned_cols=103  Identities=32%  Similarity=0.401  Sum_probs=88.6

Q ss_pred             cceEEEEEEEEeecCCCCC-CCCCCcEEEEEECC---EEEEeeeeeCCCCCeEeceEEEEeeCC---CceEEEEEEEcCC
Q 031185            4 PFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGN---QMAKTKVINSCLNPVWNEEHSLSLTEP---VGVLSLEVFDKDR   76 (164)
Q Consensus         4 ~~~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~~---~~~~T~~~~~t~~P~w~e~~~f~~~~~---~~~L~v~v~d~~~   76 (164)
                      ....|.|+|++|++|+..+ .|.+||||++++..   .+.+|++.++++||.|||+|.|.+...   ...|.++|||.|+
T Consensus       165 ~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~dr  244 (421)
T KOG1028|consen  165 ELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYDFDR  244 (421)
T ss_pred             cCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEEecCC
Confidence            4567999999999999999 77899999999943   468999999999999999999996643   2499999999999


Q ss_pred             CCCCCeeEEEEEeCcccccceeeeEEEEec
Q 031185           77 FKADDKMGKAYLNLQPIISAARLRHLVHVS  106 (164)
Q Consensus        77 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~  106 (164)
                      ++++++||.+.++|..+........|.++.
T Consensus       245 fsr~~~iGev~~~l~~~~~~~~~~~w~~l~  274 (421)
T KOG1028|consen  245 FSRHDFIGEVILPLGEVDLLSTTLFWKDLQ  274 (421)
T ss_pred             cccccEEEEEEecCccccccccceeeeccc
Confidence            999999999999999887766555565554

>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=99.78  E-value=3.1e-18  Score=113.45  Aligned_cols=102  Identities=10%  Similarity=0.213  Sum_probs=82.0

Q ss_pred             CcceEEEEEEEEeecCCCCC-CCCCCcEEEEEEC-----CEEEEeeeeeCCC-CCeEeceEEEEeeCCCc--eEEEEEEE
Q 031185            3 QPFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLG-----NQMAKTKVINSCL-NPVWNEEHSLSLTEPVG--VLSLEVFD   73 (164)
Q Consensus         3 ~~~~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~-----~~~~~T~~~~~t~-~P~w~e~~~f~~~~~~~--~L~v~v~d   73 (164)
                      +..++|+|.|++|+||+... .+..||||++++.     -.+++|++.+++. +|.|||+|.|++.....  .|.++|||
T Consensus        11 p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~d   90 (135)
T cd08692          11 AVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIKLYS   90 (135)
T ss_pred             CcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEEEEEe
Confidence            45788999999999999876 6667999999982     1358899999985 69999999999986533  78899999


Q ss_pred             cCCCCCCCeeEEEEEeCcccccceeeeEEEEe
Q 031185           74 KDRFKADDKMGKAYLNLQPIISAARLRHLVHV  105 (164)
Q Consensus        74 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l  105 (164)
                      ++..+++++||++.+..+.. .+...++|.++
T Consensus        91 ~~~~~~n~~IG~v~lG~~~~-~~~~~~hW~~m  121 (135)
T cd08692          91 RSSVRRKHFLGQVWISSDSS-SSEAVEQWKDT  121 (135)
T ss_pred             CCCCcCCceEEEEEECCccC-CchhhhhHHHH
Confidence            99988999999999998763 22234555444

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho

>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13

Probab=99.78  E-value=1.3e-18  Score=116.40  Aligned_cols=100  Identities=26%  Similarity=0.370  Sum_probs=82.5

Q ss_pred             cceEEEEEEEEeecCCCCC---CCCCCcEEEEEECC-----EEEEeeeeeCCCCCeEeceEEEEeeCCC---ceEEEEEE
Q 031185            4 PFGQLKVTVVQGKRLVIRD---FKSSDPYVVLKLGN-----QMAKTKVINSCLNPVWNEEHSLSLTEPV---GVLSLEVF   72 (164)
Q Consensus         4 ~~~~L~v~i~~a~~L~~~~---~~~~dpyv~v~~~~-----~~~~T~~~~~t~~P~w~e~~~f~~~~~~---~~L~v~v~   72 (164)
                      ..+.|.|.|++|+||+..+   .+.+||||++++..     .+.+|++.+++.||.|||.|.|.+....   ..|.++||
T Consensus        13 ~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~V~   92 (138)
T cd08407          13 AANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVELEVL   92 (138)
T ss_pred             CCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEEEEE
Confidence            5688999999999999887   24589999999843     2468999999999999999999987542   38999999


Q ss_pred             EcCCCCCCCeeEEEEEeCcccccceeeeEEEEe
Q 031185           73 DKDRFKADDKMGKAYLNLQPIISAARLRHLVHV  105 (164)
Q Consensus        73 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l  105 (164)
                      |++.++++++||++.+.+..  .+...++|.++
T Consensus        93 d~d~~~~~d~iG~v~lg~~~--~g~~~~hW~~m  123 (138)
T cd08407          93 NQDSPGQSLPLGRCSLGLHT--SGTERQHWEEM  123 (138)
T ss_pred             eCCCCcCcceeceEEecCcC--CCcHHHHHHHH
Confidence            99999999999999999874  34444555443

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy

>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin

Probab=99.77  E-value=1.6e-18  Score=115.72  Aligned_cols=103  Identities=29%  Similarity=0.402  Sum_probs=87.6

Q ss_pred             cceEEEEEEEEeecCCCCC-CCCCCcEEEEEECC-----EEEEeeeeeCCCCCeEeceEEEEeeCCC---ceEEEEEEEc
Q 031185            4 PFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGN-----QMAKTKVINSCLNPVWNEEHSLSLTEPV---GVLSLEVFDK   74 (164)
Q Consensus         4 ~~~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~~-----~~~~T~~~~~t~~P~w~e~~~f~~~~~~---~~L~v~v~d~   74 (164)
                      ..+.|.|+|++|++|+..+ .+.+||||++++..     ..++|+++.++.+|.|+|+|.|.+....   ..|.|+|||.
T Consensus        12 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d~   91 (134)
T cd00276          12 TAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVDK   91 (134)
T ss_pred             CCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEec
Confidence            4578999999999999988 88899999999843     2578999999999999999999987653   5899999999


Q ss_pred             CCCCCCCeeEEEEEeCcccccceeeeEEEEecCC
Q 031185           75 DRFKADDKMGKAYLNLQPIISAARLRHLVHVSSG  108 (164)
Q Consensus        75 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~  108 (164)
                      +..+++++||.+.+++++  .+...+.|+.|...
T Consensus        92 ~~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~  123 (134)
T cd00276          92 DSVGRNEVIGQVVLGPDS--GGEELEHWNEMLAS  123 (134)
T ss_pred             CCCCCCceeEEEEECCCC--CCcHHHHHHHHHhC
Confidence            998889999999999998  45556667666543

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin

>PLN03008 Phospholipase D delta

Probab=99.77  E-value=6.4e-18  Score=138.01  Aligned_cols=125  Identities=26%  Similarity=0.456  Sum_probs=103.4

Q ss_pred             cceEEEEEEEEeecCCCCC-------------------------------------------CCCCCcEEEEEECCEE-E
Q 031185            4 PFGQLKVTVVQGKRLVIRD-------------------------------------------FKSSDPYVVLKLGNQM-A   39 (164)
Q Consensus         4 ~~~~L~v~i~~a~~L~~~~-------------------------------------------~~~~dpyv~v~~~~~~-~   39 (164)
                      ..|.|.++|.+|++|+.++                                           .+++||||.+.+++.+ .
T Consensus        12 lhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~~rv~   91 (868)
T PLN03008         12 LHGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQATLA   91 (868)
T ss_pred             eecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECCccee
Confidence            4588999999999998521                                           1256999999998764 6


Q ss_pred             EeeeeeCCCCCeEeceEEEEeeCCCceEEEEEEEcCCCCCCCeeEEEEEeCcccccceeeeEEEEecCCceeeEEEeeCC
Q 031185           40 KTKVINSCLNPVWNEEHSLSLTEPVGVLSLEVFDKDRFKADDKMGKAYLNLQPIISAARLRHLVHVSSGETPLRKIIPDS  119 (164)
Q Consensus        40 ~T~~~~~t~~P~w~e~~~f~~~~~~~~L~v~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~  119 (164)
                      +|++++++.||.|||+|.|.+......|.|+|||++.++ +++||++.|++.++..+...+.|++|....          
T Consensus        92 RTrVi~n~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~g-aD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~----------  160 (868)
T PLN03008         92 RTRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVFG-AQIIGTAKIPVRDIASGERISGWFPVLGAS----------  160 (868)
T ss_pred             eEEeCCCCCCCCcceeEEEEecCCCceEEEEEEcCCccC-CceeEEEEEEHHHcCCCCceEEEEEccccC----------
Confidence            999999999999999999999887779999999999995 689999999999999988888888776540          


Q ss_pred             CceeeccceEEEECCEEEeeeeEEEceeeeeeEEEEEEEEeCC
Q 031185          120 ENCLARESSIICINGEVVQNVWLRLCEVESGEIELKVKIVDAP  162 (164)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~G~v~~~l~~~~~~  162 (164)
                                    +         -.....|+|+++|+|.|+.
T Consensus       161 --------------~---------kp~k~~~kl~v~lqf~pv~  180 (868)
T PLN03008        161 --------------G---------KPPKAETAIFIDMKFTPFD  180 (868)
T ss_pred             --------------C---------CCCCCCcEEEEEEEEEEcc
Confidence                          0         0122468999999999975

>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain

Probab=99.77  E-value=1.3e-17  Score=109.94  Aligned_cols=100  Identities=28%  Similarity=0.370  Sum_probs=84.2

Q ss_pred             CcceEEEEEEEEeecCCCCC-CCCCCcEEEEEEC-----CEEEEeeeeeCCCCCeEeceEEEEeeCC----CceEEEEEE
Q 031185            3 QPFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLG-----NQMAKTKVINSCLNPVWNEEHSLSLTEP----VGVLSLEVF   72 (164)
Q Consensus         3 ~~~~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~-----~~~~~T~~~~~t~~P~w~e~~~f~~~~~----~~~L~v~v~   72 (164)
                      +..+.|.|+|++|++|+..+ .+.+||||++.+.     ....+|++++++.+|.|+++|.|.....    ...|.++||
T Consensus        12 ~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~   91 (123)
T cd04035          12 PANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVL   91 (123)
T ss_pred             CCCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEE
Confidence            34578999999999999888 7889999999983     2368999999999999999999963322    248999999


Q ss_pred             EcCCCCCCCeeEEEEEeCcccccceeeeEEE
Q 031185           73 DKDRFKADDKMGKAYLNLQPIISAARLRHLV  103 (164)
Q Consensus        73 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~  103 (164)
                      |++.+ .+++||.+.+++.++..+...+.++
T Consensus        92 d~~~~-~~~~iG~~~i~l~~l~~~~~~~~~~  121 (123)
T cd04035          92 DEDRF-GNDFLGETRIPLKKLKPNQTKQFNI  121 (123)
T ss_pred             EcCCc-CCeeEEEEEEEcccCCCCcceEeec
Confidence            99988 8999999999999998876665553

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1

Probab=99.77  E-value=4.2e-18  Score=114.18  Aligned_cols=101  Identities=33%  Similarity=0.445  Sum_probs=83.2

Q ss_pred             CcceEEEEEEEEeecCCCCC-CCCCCcEEEEEEC--C---EEEEeeeeeCCCCCeEeceEEEEeeCCC---ceEEEEEEE
Q 031185            3 QPFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLG--N---QMAKTKVINSCLNPVWNEEHSLSLTEPV---GVLSLEVFD   73 (164)
Q Consensus         3 ~~~~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~--~---~~~~T~~~~~t~~P~w~e~~~f~~~~~~---~~L~v~v~d   73 (164)
                      +..|.|.|+|++|++|+..+ .+.+||||++.+.  +   ..++|++.+++.+|.|+|+|.|.+....   ..|.++|||
T Consensus        12 ~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v~d   91 (136)
T cd08402          12 PTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTVLD   91 (136)
T ss_pred             CCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEEEEe
Confidence            45689999999999999988 8899999999984  2   3578999999999999999999986432   279999999


Q ss_pred             cCCCCCCCeeEEEEEeCcccccceeeeEEEEe
Q 031185           74 KDRFKADDKMGKAYLNLQPIISAARLRHLVHV  105 (164)
Q Consensus        74 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l  105 (164)
                      ++.+++|++||++.+++...  +....+|+++
T Consensus        92 ~~~~~~~~~iG~~~i~~~~~--~~~~~~W~~~  121 (136)
T cd08402          92 YDRIGKNDPIGKVVLGCNAT--GAELRHWSDM  121 (136)
T ss_pred             CCCCCCCceeEEEEECCccC--ChHHHHHHHH
Confidence            99999999999999999753  3333445443

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:

>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7

Probab=99.77  E-value=1.3e-18  Score=116.72  Aligned_cols=102  Identities=29%  Similarity=0.461  Sum_probs=84.2

Q ss_pred             CcceEEEEEEEEeecCCCCC-CCCCCcEEEEEEC--C---EEEEeeeeeCCCCCeEeceEEEEeeCC---CceEEEEEEE
Q 031185            3 QPFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLG--N---QMAKTKVINSCLNPVWNEEHSLSLTEP---VGVLSLEVFD   73 (164)
Q Consensus         3 ~~~~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~--~---~~~~T~~~~~t~~P~w~e~~~f~~~~~---~~~L~v~v~d   73 (164)
                      ...+.|.|+|++|+||+..+ .+.+||||++.+.  +   ...+|++++++.+|.|||+|.|.+...   ...|.|+|||
T Consensus        12 ~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d   91 (136)
T cd08405          12 PTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITVMD   91 (136)
T ss_pred             CCCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEEEE
Confidence            35688999999999999888 8899999999982  2   347899999999999999999997632   2489999999


Q ss_pred             cCCCCCCCeeEEEEEeCcccccceeeeEEEEec
Q 031185           74 KDRFKADDKMGKAYLNLQPIISAARLRHLVHVS  106 (164)
Q Consensus        74 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~  106 (164)
                      ++.++++++||++.+++...  +...+.|+++.
T Consensus        92 ~~~~~~~~~lG~~~i~~~~~--~~~~~~w~~~~  122 (136)
T cd08405          92 KDRLSRNDLIGKIYLGWKSG--GLELKHWKDML  122 (136)
T ss_pred             CCCCCCCcEeEEEEECCccC--CchHHHHHHHH
Confidence            99998999999999999875  33344555443

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16

Probab=99.76  E-value=8.6e-18  Score=112.80  Aligned_cols=102  Identities=24%  Similarity=0.294  Sum_probs=83.4

Q ss_pred             CcceEEEEEEEEeecCCCCC-CCCCCcEEEEEECC------EEEEeeeeeCCCCCeEeceEEEEeeCCC---ceEEEEEE
Q 031185            3 QPFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGN------QMAKTKVINSCLNPVWNEEHSLSLTEPV---GVLSLEVF   72 (164)
Q Consensus         3 ~~~~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~~------~~~~T~~~~~t~~P~w~e~~~f~~~~~~---~~L~v~v~   72 (164)
                      ...+.|.|+|++|+||+..+ .+.+||||++.+..      .+++|++.+++.||.|||+|.|.+....   ..|.++||
T Consensus        12 ~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~V~   91 (138)
T cd08408          12 ALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMFSVY   91 (138)
T ss_pred             CCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEEEEE
Confidence            35689999999999999988 88899999999932      2478999999999999999999987532   38999999


Q ss_pred             EcCCCCCCCeeEEEEEeCcccccceeeeEEEEe
Q 031185           73 DKDRFKADDKMGKAYLNLQPIISAARLRHLVHV  105 (164)
Q Consensus        73 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l  105 (164)
                      |.+.++++++||++.+.+..... ...++|+.+
T Consensus        92 ~~~~~~~~~~iG~v~l~~~~~~~-~~~~hW~~~  123 (138)
T cd08408          92 NKRKMKRKEMIGWFSLGLNSSGE-EEEEHWNEM  123 (138)
T ss_pred             ECCCCCCCcEEEEEEECCcCCCc-hHHHHHHHH
Confidence            99999999999999998874432 122455544

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.75  E-value=3.3e-19  Score=135.52  Aligned_cols=93  Identities=40%  Similarity=0.547  Sum_probs=84.0

Q ss_pred             ceEEEEEEEEeecCCCCC-CCCCCcEEEEEE-----CCEEEEeeeeeCCCCCeEeceEEEEeeCCCc--eEEEEEEEcCC
Q 031185            5 FGQLKVTVVQGKRLVIRD-FKSSDPYVVLKL-----GNQMAKTKVINSCLNPVWNEEHSLSLTEPVG--VLSLEVFDKDR   76 (164)
Q Consensus         5 ~~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~-----~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~--~L~v~v~d~~~   76 (164)
                      ...|+|+|.+|+||.+++ +|.+|||+++.+     +..+++|++++.++||+|||+|.|.+.+.+.  .|.++|||||.
T Consensus       179 ~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDr  258 (683)
T KOG0696|consen  179 RDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWDR  258 (683)
T ss_pred             CceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEecccc
Confidence            357899999999999999 999999999999     2345899999999999999999999987654  99999999999


Q ss_pred             CCCCCeeEEEEEeCcccccce
Q 031185           77 FKADDKMGKAYLNLQPIISAA   97 (164)
Q Consensus        77 ~~~d~~lG~~~i~l~~l~~~~   97 (164)
                      .+++||+|+..+.++++....
T Consensus       259 TsRNDFMGslSFgisEl~K~p  279 (683)
T KOG0696|consen  259 TSRNDFMGSLSFGISELQKAP  279 (683)
T ss_pred             cccccccceecccHHHHhhcc
Confidence            999999999999999887763

>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17

Probab=99.75  E-value=1e-17  Score=112.12  Aligned_cols=89  Identities=24%  Similarity=0.443  Sum_probs=76.0

Q ss_pred             CcceEEEEEEEEeecCCCCC-CCCCCcEEEEEEC--C---EEEEeeeeeCCCCCeEeceEEEEeeCCC---ceEEEEEEE
Q 031185            3 QPFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLG--N---QMAKTKVINSCLNPVWNEEHSLSLTEPV---GVLSLEVFD   73 (164)
Q Consensus         3 ~~~~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~--~---~~~~T~~~~~t~~P~w~e~~~f~~~~~~---~~L~v~v~d   73 (164)
                      ...+.|.|+|++|++|+..+ .+.+||||++.+.  .   ...+|++++++.||.|||+|.|.+....   ..|.++|||
T Consensus        11 ~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d   90 (135)
T cd08410          11 PSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTVYG   90 (135)
T ss_pred             CCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEEEe
Confidence            35688999999999999988 8899999999972  2   3478999999999999999999986432   269999999


Q ss_pred             cCCCCCCCeeEEEEEeCc
Q 031185           74 KDRFKADDKMGKAYLNLQ   91 (164)
Q Consensus        74 ~~~~~~d~~lG~~~i~l~   91 (164)
                      ++..+++++||++.+...
T Consensus        91 ~d~~~~~~~iG~~~l~~~  108 (135)
T cd08410          91 HNVKSSNDFIGRIVIGQY  108 (135)
T ss_pred             CCCCCCCcEEEEEEEcCc
Confidence            999999999999886543

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-

>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

Probab=99.75  E-value=1.4e-16  Score=105.52  Aligned_cols=90  Identities=32%  Similarity=0.517  Sum_probs=77.0

Q ss_pred             eEEEEEEEEeecCCCCC---CCCCCcEEEEEE------CCEEEEeeeeeCCC-CCeEeceEEEEeeCCC-ceEEEEEEEc
Q 031185            6 GQLKVTVVQGKRLVIRD---FKSSDPYVVLKL------GNQMAKTKVINSCL-NPVWNEEHSLSLTEPV-GVLSLEVFDK   74 (164)
Q Consensus         6 ~~L~v~i~~a~~L~~~~---~~~~dpyv~v~~------~~~~~~T~~~~~t~-~P~w~e~~~f~~~~~~-~~L~v~v~d~   74 (164)
                      -.|+|+|++|++|+..+   .+..||||++++      .....+|++..++. +|.|+|+|.|.+..+. ..|.++|||+
T Consensus         2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~   81 (128)
T cd00275           2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDE   81 (128)
T ss_pred             eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeC
Confidence            36899999999998766   568899999999      24568999988765 9999999999988654 3789999999


Q ss_pred             CCCCCCCeeEEEEEeCcccccc
Q 031185           75 DRFKADDKMGKAYLNLQPIISA   96 (164)
Q Consensus        75 ~~~~~d~~lG~~~i~l~~l~~~   96 (164)
                      +.. ++++||++.+++.++..+
T Consensus        82 ~~~-~~~~iG~~~~~l~~l~~g  102 (128)
T cd00275          82 DSG-DDDFLGQACLPLDSLRQG  102 (128)
T ss_pred             CCC-CCcEeEEEEEEhHHhcCc
Confidence            988 899999999999988544

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking

>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15

Probab=99.75  E-value=7.3e-18  Score=113.13  Aligned_cols=103  Identities=23%  Similarity=0.335  Sum_probs=85.0

Q ss_pred             cceEEEEEEEEeecCCCCCCCCCCcEEEEEECC-----EEEEeeeeeCCCCCeEeceEEEEeeCCC---ceEEEEEEEcC
Q 031185            4 PFGQLKVTVVQGKRLVIRDFKSSDPYVVLKLGN-----QMAKTKVINSCLNPVWNEEHSLSLTEPV---GVLSLEVFDKD   75 (164)
Q Consensus         4 ~~~~L~v~i~~a~~L~~~~~~~~dpyv~v~~~~-----~~~~T~~~~~t~~P~w~e~~~f~~~~~~---~~L~v~v~d~~   75 (164)
                      ..+.|.|+|++|+||+..+.+.+||||++.+..     .+++|++.+++.||.|||+|.|.+....   ..|.++||+.+
T Consensus        13 ~~~~L~V~V~~a~nL~~~~~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~~~   92 (137)
T cd08409          13 TLNRLTVVVLRARGLRQLDHAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVMQSG   92 (137)
T ss_pred             CCCeEEEEEEEecCCCcccCCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEEeCC
Confidence            467899999999999887766799999999842     3578999999999999999999986432   38999999999


Q ss_pred             CCCCCCeeEEEEEeCcccccceeeeEEEEec
Q 031185           76 RFKADDKMGKAYLNLQPIISAARLRHLVHVS  106 (164)
Q Consensus        76 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~  106 (164)
                      ..+++++||++.+.......+...++|.++.
T Consensus        93 ~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~  123 (137)
T cd08409          93 GVRKSKLLGRVVLGPFMYARGKELEHWNDML  123 (137)
T ss_pred             CCCCcceEEEEEECCcccCCChHHHHHHHHH
Confidence            9889999999999876665565556665543

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id

>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

Probab=99.75  E-value=1.5e-17  Score=111.27  Aligned_cols=101  Identities=26%  Similarity=0.368  Sum_probs=82.2

Q ss_pred             CcceEEEEEEEEeecCCCCC-CCCCCcEEEEEEC--C---EEEEeeeeeCCCCCeEeceEEEEeeCCC---ceEEEEEEE
Q 031185            3 QPFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLG--N---QMAKTKVINSCLNPVWNEEHSLSLTEPV---GVLSLEVFD   73 (164)
Q Consensus         3 ~~~~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~--~---~~~~T~~~~~t~~P~w~e~~~f~~~~~~---~~L~v~v~d   73 (164)
                      ...+.|+|+|++|++|+..+ .+.+||||++.+.  +   ..++|++.+++.+|.|+|+|.|.+....   ..|.++|||
T Consensus        11 ~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~d   90 (134)
T cd08403          11 PTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAVVD   90 (134)
T ss_pred             CCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEEEE
Confidence            45689999999999999998 8899999999983  2   2578999999999999999999976432   268999999


Q ss_pred             cCCCCCCCeeEEEEEeCcccccceeeeEEEEe
Q 031185           74 KDRFKADDKMGKAYLNLQPIISAARLRHLVHV  105 (164)
Q Consensus        74 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l  105 (164)
                      ++.++++++||.+.+++..  .+.....|+.+
T Consensus        91 ~~~~~~~~~IG~~~l~~~~--~~~~~~~w~~~  120 (134)
T cd08403          91 YDRVGHNELIGVCRVGPNA--DGQGREHWNEM  120 (134)
T ss_pred             CCCCCCCceeEEEEECCCC--CCchHHHHHHH
Confidence            9999999999999998762  23333445443

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind

>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein

Probab=99.73  E-value=7.7e-17  Score=104.15  Aligned_cols=80  Identities=31%  Similarity=0.518  Sum_probs=69.1

Q ss_pred             EEEEEEEeecCCCCCCCCCCcEEEEEECC-----EEEEeeeeeCCCCCeEeceEEEEeeCCCceEEEEEEEc-------C
Q 031185            8 LKVTVVQGKRLVIRDFKSSDPYVVLKLGN-----QMAKTKVINSCLNPVWNEEHSLSLTEPVGVLSLEVFDK-------D   75 (164)
Q Consensus         8 L~v~i~~a~~L~~~~~~~~dpyv~v~~~~-----~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~L~v~v~d~-------~   75 (164)
                      |.|+|.+|+||+    +.+||||.+.++.     ...+|+++++|.||.|||+|.|.+.. ...|.+.|||+       +
T Consensus         1 L~V~V~~A~~L~----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~-s~~L~~~v~d~~~~~~~~d   75 (118)
T cd08686           1 LNVIVHSAQGFK----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG-SQTLRILCYEKCYSKVKLD   75 (118)
T ss_pred             CEEEEEeCCCCC----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC-CCEEEEEEEEccccccccc
Confidence            679999999995    5689999998853     35899999999999999999999974 56999999998       4


Q ss_pred             CCCCCCeeEEEEEeCcc
Q 031185           76 RFKADDKMGKAYLNLQP   92 (164)
Q Consensus        76 ~~~~d~~lG~~~i~l~~   92 (164)
                      ..+.|+++|.+.+.|+.
T Consensus        76 ~~~~d~~~G~g~i~Ld~   92 (118)
T cd08686          76 GEGTDAIMGKGQIQLDP   92 (118)
T ss_pred             ccCcccEEEEEEEEECH
Confidence            56789999998888864

The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr

>cd04047 C2B_Copine C2 domain second repeat in Copine

Probab=99.72  E-value=9.3e-17  Score=103.83  Aligned_cols=88  Identities=27%  Similarity=0.486  Sum_probs=74.0

Q ss_pred             EEEEEeecCCCCC-CCCCCcEEEEEECC------EEEEeeeeeCCCCCeEeceEEEEeeCC-----CceEEEEEEEcCCC
Q 031185           10 VTVVQGKRLVIRD-FKSSDPYVVLKLGN------QMAKTKVINSCLNPVWNEEHSLSLTEP-----VGVLSLEVFDKDRF   77 (164)
Q Consensus        10 v~i~~a~~L~~~~-~~~~dpyv~v~~~~------~~~~T~~~~~t~~P~w~e~~~f~~~~~-----~~~L~v~v~d~~~~   77 (164)
                      +-.++|++|+..+ .+.+||||++++.+      ..++|++++++.+|.|+ +|.|.....     ...|.++|||++..
T Consensus         4 ~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~   82 (110)
T cd04047           4 ELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSS   82 (110)
T ss_pred             EEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCC
Confidence            4466899999999 88999999999843      24899999999999999 688875421     35899999999999


Q ss_pred             CCCCeeEEEEEeCccccccee
Q 031185           78 KADDKMGKAYLNLQPIISAAR   98 (164)
Q Consensus        78 ~~d~~lG~~~i~l~~l~~~~~   98 (164)
                      ++|++||++.++++++.....
T Consensus        83 ~~d~~iG~~~~~l~~l~~~~~  103 (110)
T cd04047          83 GKHDLIGEFETTLDELLKSSP  103 (110)
T ss_pred             CCCcEEEEEEEEHHHHhcCCC
Confidence            999999999999999985543

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom

>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking

Probab=99.68  E-value=4.4e-16  Score=95.54  Aligned_cols=80  Identities=40%  Similarity=0.642  Sum_probs=71.5

Q ss_pred             EEEEEEEeecCCCCC-CCCCCcEEEEEECC---EEEEeeeeeCCCCCeEeceEEEEeeCCC-ceEEEEEEEcCCCCCCCe
Q 031185            8 LKVTVVQGKRLVIRD-FKSSDPYVVLKLGN---QMAKTKVINSCLNPVWNEEHSLSLTEPV-GVLSLEVFDKDRFKADDK   82 (164)
Q Consensus         8 L~v~i~~a~~L~~~~-~~~~dpyv~v~~~~---~~~~T~~~~~t~~P~w~e~~~f~~~~~~-~~L~v~v~d~~~~~~d~~   82 (164)
                      |+|+|++|++|+..+ .+..+||+++.++.   ..++|++..++.+|.|+++|.|.+.... ..|.|+|||.+..++|++
T Consensus         1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~   80 (85)
T PF00168_consen    1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDEL   80 (85)
T ss_dssp             EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEE
T ss_pred             CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCE
Confidence            789999999999988 77999999999966   6799999999999999999999966443 489999999999988999


Q ss_pred             eEEEE
Q 031185           83 MGKAY   87 (164)
Q Consensus        83 lG~~~   87 (164)
                      ||++.
T Consensus        81 iG~~~   85 (85)
T PF00168_consen   81 IGEVK   85 (85)
T ss_dssp             EEEEE
T ss_pred             EEEEC
Confidence            99873

C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....

>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]

Probab=99.63  E-value=6.8e-16  Score=122.86  Aligned_cols=99  Identities=23%  Similarity=0.341  Sum_probs=87.6

Q ss_pred             eEEEEEEEEeecCCCCC-CCCCCcEEEEEECCEE-EEeeeeeCCCCCeEeceEEEEeeCCCceEEEEEEEcCCCCCCCee
Q 031185            6 GQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGNQM-AKTKVINSCLNPVWNEEHSLSLTEPVGVLSLEVFDKDRFKADDKM   83 (164)
Q Consensus         6 ~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~~~~-~~T~~~~~t~~P~w~e~~~f~~~~~~~~L~v~v~d~~~~~~d~~l   83 (164)
                      ..|.|+|.+|+||+.++ .|..||||.+.+++.. .+|.++.+++.|.|.|.|.|.++.....|.+.|||.| +++|+.|
T Consensus         5 ~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~iP~~F~~l~fYv~D~d-~~~D~~I   83 (800)
T KOG2059|consen    5 QSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEIPRTFRYLSFYVWDRD-LKRDDII   83 (800)
T ss_pred             cceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhhhcCCccccceEEecCcceeeEEEEEeccc-ccccccc
Confidence            45899999999999999 9999999999997654 8999999999999999999999999899999999999 8899999


Q ss_pred             EEEEEeCcccccceeeeEEEEe
Q 031185           84 GKAYLNLQPIISAARLRHLVHV  105 (164)
Q Consensus        84 G~~~i~l~~l~~~~~~~~~~~l  105 (164)
                      |.+.|.=.++......+.|+.|
T Consensus        84 GKvai~re~l~~~~~~d~W~~L  105 (800)
T KOG2059|consen   84 GKVAIKREDLHMYPGKDTWFSL  105 (800)
T ss_pred             ceeeeeHHHHhhCCCCccceec
Confidence            9999988877666544444444

>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin

Probab=99.61  E-value=8.4e-15  Score=97.01  Aligned_cols=91  Identities=29%  Similarity=0.331  Sum_probs=76.8

Q ss_pred             EEEEEEEEeecCCCCC---CC--CCCcEEEEEECC---EEEEeeeeeCCCC--CeEeceEEEEeeCC-------------
Q 031185            7 QLKVTVVQGKRLVIRD---FK--SSDPYVVLKLGN---QMAKTKVINSCLN--PVWNEEHSLSLTEP-------------   63 (164)
Q Consensus         7 ~L~v~i~~a~~L~~~~---~~--~~dpyv~v~~~~---~~~~T~~~~~t~~--P~w~e~~~f~~~~~-------------   63 (164)
                      .|+|.|.+|++++..+   .|  .+||||++.+.+   .+++|.++.++.+  |.||+.|.|++...             
T Consensus         1 eLRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~   80 (133)
T cd08374           1 ELRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEH   80 (133)
T ss_pred             CEEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeecc
Confidence            3899999999966543   45  499999999954   5699999999999  99999999987651             


Q ss_pred             -----------CceEEEEEEEcCCCCCCCeeEEEEEeCcccccce
Q 031185           64 -----------VGVLSLEVFDKDRFKADDKMGKAYLNLQPIISAA   97 (164)
Q Consensus        64 -----------~~~L~v~v~d~~~~~~d~~lG~~~i~l~~l~~~~   97 (164)
                                 ...|.++|||.|.+++|++||.++++|..+..+.
T Consensus        81 ~~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~  125 (133)
T cd08374          81 FWSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPA  125 (133)
T ss_pred             ccccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccccc
Confidence                       1289999999999999999999999999886664

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.60  E-value=1.7e-15  Score=120.17  Aligned_cols=100  Identities=25%  Similarity=0.512  Sum_probs=87.3

Q ss_pred             ceEEEEEEEEeecCCCCC-CCCCCcEEEEEECCEEEEeeeeeCCCCCeEeceEEEEeeCCCceEEEEEEEcCCC------
Q 031185            5 FGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEPVGVLSLEVFDKDRF------   77 (164)
Q Consensus         5 ~~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~L~v~v~d~~~~------   77 (164)
                      ...++++|++|.+|..++ .|++|||+.+.++..+.+|+++...+||+|||.|.|+.++..+.+++.|||.+.-      
T Consensus       294 sakitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechnstdrikvrvwded~dlksklr  373 (1283)
T KOG1011|consen  294 SAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNSTDRIKVRVWDEDNDLKSKLR  373 (1283)
T ss_pred             ceeeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecCCCceeEEEEecCcccHHHHHH
Confidence            457899999999999999 9999999999999999999999999999999999999999989999999998763      


Q ss_pred             -----CCCCeeEEEEEeCcccccceeeeEEEEec
Q 031185           78 -----KADDKMGKAYLNLQPIISAARLRHLVHVS  106 (164)
Q Consensus        78 -----~~d~~lG~~~i~l~~l~~~~~~~~~~~l~  106 (164)
                           ..|+|+|+..|.+..+.  +.++.||.|.
T Consensus       374 qkl~resddflgqtvievrtls--gemdvwynle  405 (1283)
T KOG1011|consen  374 QKLTRESDDFLGQTVIEVRTLS--GEMDVWYNLE  405 (1283)
T ss_pred             HHhhhcccccccceeEEEEecc--cchhhhcchh
Confidence                 46899999999988653  3455555554

>cd00030 C2 C2 domain

Probab=99.60  E-value=2.2e-14  Score=89.87  Aligned_cols=96  Identities=40%  Similarity=0.664  Sum_probs=82.3

Q ss_pred             EEEEEEEeecCCCCC-CCCCCcEEEEEECC-EEEEeeeeeCCCCCeEeceEEEEeeC-CCceEEEEEEEcCCCCCCCeeE
Q 031185            8 LKVTVVQGKRLVIRD-FKSSDPYVVLKLGN-QMAKTKVINSCLNPVWNEEHSLSLTE-PVGVLSLEVFDKDRFKADDKMG   84 (164)
Q Consensus         8 L~v~i~~a~~L~~~~-~~~~dpyv~v~~~~-~~~~T~~~~~t~~P~w~e~~~f~~~~-~~~~L~v~v~d~~~~~~d~~lG   84 (164)
                      |.|.|++|++|.... ....+|||.+.+.+ ..++|.+..++.+|.|++.|.|.+.. ....|.++||+.+....+.++|
T Consensus         1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ig   80 (102)
T cd00030           1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDFLG   80 (102)
T ss_pred             CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCceeE
Confidence            478999999998766 67899999999987 88999999999999999999999987 4569999999999887789999


Q ss_pred             EEEEeCcccc-cceeeeEEE
Q 031185           85 KAYLNLQPII-SAARLRHLV  103 (164)
Q Consensus        85 ~~~i~l~~l~-~~~~~~~~~  103 (164)
                      .+.+++.++. .......|+
T Consensus        81 ~~~~~l~~l~~~~~~~~~~~  100 (102)
T cd00030          81 EVEIPLSELLDSGKEGELWL  100 (102)
T ss_pred             EEEEeHHHhhhcCCcCccee
Confidence            9999999987 444444443

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.

>smart00239 C2 Protein kinase C conserved region 2 (CalB)

Probab=99.59  E-value=2.7e-14  Score=89.77  Aligned_cols=92  Identities=38%  Similarity=0.689  Sum_probs=80.7

Q ss_pred             EEEEEEEEeecCCCCC-CCCCCcEEEEEECCE---EEEeeeeeCCCCCeEeceEEEEeeCC-CceEEEEEEEcCCCCCCC
Q 031185            7 QLKVTVVQGKRLVIRD-FKSSDPYVVLKLGNQ---MAKTKVINSCLNPVWNEEHSLSLTEP-VGVLSLEVFDKDRFKADD   81 (164)
Q Consensus         7 ~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~~~---~~~T~~~~~t~~P~w~e~~~f~~~~~-~~~L~v~v~d~~~~~~d~   81 (164)
                      .|.+.|++|++|.... .+..+||+.+.+...   ..+|++..++.+|.|++.|.|.+... ...|.++||+....+.+.
T Consensus         1 ~l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~   80 (101)
T smart00239        1 TLTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDD   80 (101)
T ss_pred             CeEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCc
Confidence            3789999999998877 567899999999764   79999999999999999999999887 679999999999887789


Q ss_pred             eeEEEEEeCccccccee
Q 031185           82 KMGKAYLNLQPIISAAR   98 (164)
Q Consensus        82 ~lG~~~i~l~~l~~~~~   98 (164)
                      ++|.+.+++.++..+..
T Consensus        81 ~~G~~~~~l~~~~~~~~   97 (101)
T smart00239       81 FIGQVTIPLSDLLLGGR   97 (101)
T ss_pred             eeEEEEEEHHHcccCcc
Confidence            99999999998866643

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.

>PLN02223 phosphoinositide phospholipase C

Probab=99.51  E-value=6.5e-13  Score=104.95  Aligned_cols=96  Identities=29%  Similarity=0.472  Sum_probs=79.4

Q ss_pred             ceEEEEEEEEeecCCCC-----C-CCCCCcEEEEEECC-----EEEEeeeeeCCCCCeEeceEEEEeeCCCc-eEEEEEE
Q 031185            5 FGQLKVTVVQGKRLVIR-----D-FKSSDPYVVLKLGN-----QMAKTKVINSCLNPVWNEEHSLSLTEPVG-VLSLEVF   72 (164)
Q Consensus         5 ~~~L~v~i~~a~~L~~~-----~-~~~~dpyv~v~~~~-----~~~~T~~~~~t~~P~w~e~~~f~~~~~~~-~L~v~v~   72 (164)
                      ...|.|+|++|++++..     + ....||||++.+.+     ..++|.+..++.||.|||+|.|.+..+.. .|.|+|+
T Consensus       408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~  487 (537)
T PLN02223        408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVY  487 (537)
T ss_pred             ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEE
Confidence            35799999999987411     2 34679999999933     35678888889999999999999988765 6899999


Q ss_pred             EcCCCCCCCeeEEEEEeCcccccceeee
Q 031185           73 DKDRFKADDKMGKAYLNLQPIISAARLR  100 (164)
Q Consensus        73 d~~~~~~d~~lG~~~i~l~~l~~~~~~~  100 (164)
                      |++..+.++|+|++.+++..+..+.++-
T Consensus       488 D~D~~~~ddfiGQ~~LPv~~Lr~GyR~V  515 (537)
T PLN02223        488 DYEVSTADAFCGQTCLPVSELIEGIRAV  515 (537)
T ss_pred             ecCCCCCCcEEEEEecchHHhcCCceeE
Confidence            9999888999999999999998886543

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

Probab=99.48  E-value=4.4e-13  Score=112.12  Aligned_cols=97  Identities=28%  Similarity=0.490  Sum_probs=86.9

Q ss_pred             CcceEEEEEEEEeecCCCCC---CCCCCcEEEEEECC-EEEEeeeeeCCCCCeEeceEEEEeeCCCceEEEEEEEcCCCC
Q 031185            3 QPFGQLKVTVVQGKRLVIRD---FKSSDPYVVLKLGN-QMAKTKVINSCLNPVWNEEHSLSLTEPVGVLSLEVFDKDRFK   78 (164)
Q Consensus         3 ~~~~~L~v~i~~a~~L~~~~---~~~~dpyv~v~~~~-~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~L~v~v~d~~~~~   78 (164)
                      .+.|+|.++|.+|++|...+   .+..|||+.+...+ ...+|++.+++.||.|||+|.+.+....+.|.++|||.+...
T Consensus       433 ~aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r~~gkT~v~~nt~nPvwNEt~Yi~lns~~d~L~LslyD~n~~~  512 (1227)
T COG5038         433 TAIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLNSFTDPLNLSLYDFNSFK  512 (1227)
T ss_pred             CeeEEEEEEEeeccCcccccccccCCCCceEEEEeccccCCccceeeccCCccccceEEEEecccCCceeEEEEeccccC
Confidence            47899999999999999887   67899999999854 347999999999999999999999988889999999988888


Q ss_pred             CCCeeEEEEEeCcccccceee
Q 031185           79 ADDKMGKAYLNLQPIISAARL   99 (164)
Q Consensus        79 ~d~~lG~~~i~l~~l~~~~~~   99 (164)
                      +|+.+|++.++|..+......
T Consensus       513 sd~vvG~~~l~L~~L~~~~~~  533 (1227)
T COG5038         513 SDKVVGSTQLDLALLHQNPVK  533 (1227)
T ss_pred             CcceeeeEEechHHhhhcccc
Confidence            999999999999988776544

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

Probab=99.46  E-value=4e-13  Score=112.35  Aligned_cols=107  Identities=30%  Similarity=0.447  Sum_probs=94.7

Q ss_pred             CCcceEEEEEEEEeecCCCCC-CCCCCcEEEEEECCE-EEEeeeeeCCCCCeEeceEEEEeeCC-CceEEEEEEEcCCCC
Q 031185            2 RQPFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGNQ-MAKTKVINSCLNPVWNEEHSLSLTEP-VGVLSLEVFDKDRFK   78 (164)
Q Consensus         2 ~~~~~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~~~-~~~T~~~~~t~~P~w~e~~~f~~~~~-~~~L~v~v~d~~~~~   78 (164)
                      -...|.|+|.+..|.||+..+ .+.+||||++.+.++ .++|+++++++||.|||.+.+++... .+.+.+.|+|++...
T Consensus      1036 v~nsG~l~I~~~~~~nl~~~d~ng~sDpfv~~~ln~k~vyktkv~KktlNPvwNEe~~i~v~~r~~D~~~i~v~Dwd~~~ 1115 (1227)
T COG5038        1036 VENSGYLTIMLRSGENLPSSDENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLNRVKDVLTINVNDWDSGE 1115 (1227)
T ss_pred             ecccCcEEEEEeccCCCcccccCCCCCceEEEEecceecccccchhccCCCCccccceEeeeccccceEEEEEeecccCC
Confidence            356789999999999999999 888999999999776 69999999999999999999999854 458999999999999


Q ss_pred             CCCeeEEEEEeCcccccceeeeEEEEecCC
Q 031185           79 ADDKMGKAYLNLQPIISAARLRHLVHVSSG  108 (164)
Q Consensus        79 ~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~  108 (164)
                      +++.||.+.++|..+..+........+.+.
T Consensus      1116 knd~lg~~~idL~~l~~~~~~n~~i~ldgk 1145 (1227)
T COG5038        1116 KNDLLGTAEIDLSKLEPGGTTNSNIPLDGK 1145 (1227)
T ss_pred             CccccccccccHhhcCcCCccceeeeccCc
Confidence            999999999999999888777666566544

>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.44  E-value=6.6e-13  Score=103.87  Aligned_cols=89  Identities=34%  Similarity=0.512  Sum_probs=77.3

Q ss_pred             cceEEEEEEEEeecCCCCC-CCCCCcEEEEEE--CC---EEEEeeeeeCCCCCeEeceEEEEeeCCCc---eEEEEEEEc
Q 031185            4 PFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKL--GN---QMAKTKVINSCLNPVWNEEHSLSLTEPVG---VLSLEVFDK   74 (164)
Q Consensus         4 ~~~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~--~~---~~~~T~~~~~t~~P~w~e~~~f~~~~~~~---~L~v~v~d~   74 (164)
                      ..|.|+|.|++|++|+.++ .+..||||++.+  +.   .+.+|.+.+++.||.|||+|.|.+.....   .|.|+|||+
T Consensus       296 ~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~l~l~V~d~  375 (421)
T KOG1028|consen  296 TAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAEVSLELTVWDH  375 (421)
T ss_pred             CCCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhheeEEEEEEEEc
Confidence            4689999999999999999 889999999998  22   35889999999999999999998875432   789999999


Q ss_pred             CCCCCCCeeEEEEEeCcc
Q 031185           75 DRFKADDKMGKAYLNLQP   92 (164)
Q Consensus        75 ~~~~~d~~lG~~~i~l~~   92 (164)
                      +.++.+++||.+.+....
T Consensus       376 d~~~~~~~iG~~~lG~~~  393 (421)
T KOG1028|consen  376 DTLGSNDLIGRCILGSDS  393 (421)
T ss_pred             ccccccceeeEEEecCCC
Confidence            999999999988876654

>PLN02270 phospholipase D alpha

Probab=99.44  E-value=2.5e-12  Score=105.57  Aligned_cols=104  Identities=19%  Similarity=0.331  Sum_probs=88.5

Q ss_pred             cceEEEEEEEEeecCCCC-----------------C--CCCCCcEEEEEECCEE-EEeeeeeCC-CCCeEeceEEEEeeC
Q 031185            4 PFGQLKVTVVQGKRLVIR-----------------D--FKSSDPYVVLKLGNQM-AKTKVINSC-LNPVWNEEHSLSLTE   62 (164)
Q Consensus         4 ~~~~L~v~i~~a~~L~~~-----------------~--~~~~dpyv~v~~~~~~-~~T~~~~~t-~~P~w~e~~~f~~~~   62 (164)
                      ..|.|.++|.+|++|+..                 .  .+.+|||+.+.+++.+ .+|+++.+. .||.|+|+|.+++..
T Consensus         6 lhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah   85 (808)
T PLN02270          6 LHGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAH   85 (808)
T ss_pred             eecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeecc
Confidence            568999999999999863                 1  2457999999998765 799999884 699999999999998


Q ss_pred             CCceEEEEEEEcCCCCCCCeeEEEEEeCcccccceeeeEEEEecCC
Q 031185           63 PVGVLSLEVFDKDRFKADDKMGKAYLNLQPIISAARLRHLVHVSSG  108 (164)
Q Consensus        63 ~~~~L~v~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~  108 (164)
                      ....+.|.|.|.+.++ ..+||.+.+++.++..+...+.|+++...
T Consensus        86 ~~~~v~f~vkd~~~~g-~~~ig~~~~p~~~~~~g~~i~~~~~~~~~  130 (808)
T PLN02270         86 MASNIIFTVKDDNPIG-ATLIGRAYIPVEEILDGEEVDRWVEILDN  130 (808)
T ss_pred             CcceEEEEEecCCccC-ceEEEEEEEEHHHhcCCCccccEEeccCC
Confidence            8789999999999994 56999999999999888777777776544

>PLN02952 phosphoinositide phospholipase C

Probab=99.39  E-value=1.2e-11  Score=99.56  Aligned_cols=94  Identities=32%  Similarity=0.408  Sum_probs=78.3

Q ss_pred             ceEEEEEEEEeecCCCCC-------CCCCCcEEEEEEC-----CEEEEeeeeeCCCCCeEeceEEEEeeCCCc-eEEEEE
Q 031185            5 FGQLKVTVVQGKRLVIRD-------FKSSDPYVVLKLG-----NQMAKTKVINSCLNPVWNEEHSLSLTEPVG-VLSLEV   71 (164)
Q Consensus         5 ~~~L~v~i~~a~~L~~~~-------~~~~dpyv~v~~~-----~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~-~L~v~v   71 (164)
                      ...|.|+|++|++++...       ....||||++.+.     ..+.+|+++.++.||.|+|+|.|.+..+.. .|.|.|
T Consensus       469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V  548 (599)
T PLN02952        469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEV  548 (599)
T ss_pred             cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEE
Confidence            457999999998875321       2345999999983     356899999999999999999999887654 688999


Q ss_pred             EEcCCCCCCCeeEEEEEeCccccccee
Q 031185           72 FDKDRFKADDKMGKAYLNLQPIISAAR   98 (164)
Q Consensus        72 ~d~~~~~~d~~lG~~~i~l~~l~~~~~   98 (164)
                      ||++..+.++|+|++.+++..+..+.+
T Consensus       549 ~D~D~~~~ddfiGq~~lPv~~Lr~GyR  575 (599)
T PLN02952        549 REYDMSEKDDFGGQTCLPVSELRPGIR  575 (599)
T ss_pred             EecCCCCCCCeEEEEEcchhHhcCCce
Confidence            999998889999999999998888765

>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]

Probab=99.38  E-value=4.8e-12  Score=102.28  Aligned_cols=94  Identities=30%  Similarity=0.467  Sum_probs=79.3

Q ss_pred             EEEEEEEEeecCCCCC--C---CCCCcEEEEEECC-----EEEEee-eeeCCCCCeEeceEEEEeeCCCc-eEEEEEEEc
Q 031185            7 QLKVTVVQGKRLVIRD--F---KSSDPYVVLKLGN-----QMAKTK-VINSCLNPVWNEEHSLSLTEPVG-VLSLEVFDK   74 (164)
Q Consensus         7 ~L~v~i~~a~~L~~~~--~---~~~dpyv~v~~~~-----~~~~T~-~~~~t~~P~w~e~~~f~~~~~~~-~L~v~v~d~   74 (164)
                      +|.|.|+++.+++...  .   ...|||+.+++.+     ...+|+ +..++-+|.|+|+|.|.+..+.. -|.+.|+|+
T Consensus       617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~  696 (746)
T KOG0169|consen  617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY  696 (746)
T ss_pred             eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence            6999999999655433  1   3579999999843     457898 55669999999999999998866 778999999


Q ss_pred             CCCCCCCeeEEEEEeCcccccceeee
Q 031185           75 DRFKADDKMGKAYLNLQPIISAARLR  100 (164)
Q Consensus        75 ~~~~~d~~lG~~~i~l~~l~~~~~~~  100 (164)
                      +..++|+|+|+..+++..+..+.++-
T Consensus       697 d~~~~ddF~GQ~tlP~~~L~~GyRhV  722 (746)
T KOG0169|consen  697 DYIGKDDFIGQTTLPVSELRQGYRHV  722 (746)
T ss_pred             CCCCcccccceeeccHHHhhCceeee
Confidence            99999999999999999998887765

>PLN02230 phosphoinositide phospholipase C 4

Probab=99.35  E-value=8.6e-12  Score=100.27  Aligned_cols=96  Identities=28%  Similarity=0.424  Sum_probs=79.9

Q ss_pred             ceEEEEEEEEeecCCCC------C-CCCCCcEEEEEEC-----CEEEEeeeeeCCCCCeEeceEEEEeeCCCc-eEEEEE
Q 031185            5 FGQLKVTVVQGKRLVIR------D-FKSSDPYVVLKLG-----NQMAKTKVINSCLNPVWNEEHSLSLTEPVG-VLSLEV   71 (164)
Q Consensus         5 ~~~L~v~i~~a~~L~~~------~-~~~~dpyv~v~~~-----~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~-~L~v~v   71 (164)
                      ..+|.|+|+.+.+++..      + ....||||++.+.     ....+|++..++.||.|+|+|.|.+..+.. .|.|.|
T Consensus       468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V  547 (598)
T PLN02230        468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEV  547 (598)
T ss_pred             CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEE
Confidence            46799999999986421      1 2357999999992     345788888889999999999999887754 788999


Q ss_pred             EEcCCCCCCCeeEEEEEeCcccccceeee
Q 031185           72 FDKDRFKADDKMGKAYLNLQPIISAARLR  100 (164)
Q Consensus        72 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~  100 (164)
                      +|++...+|+|+|+..+++..+..+.++-
T Consensus       548 ~d~d~~~~ddfiGQ~~lPv~~Lr~GyR~V  576 (598)
T PLN02230        548 HEHDINEKDDFGGQTCLPVSEIRQGIHAV  576 (598)
T ss_pred             EECCCCCCCCEEEEEEcchHHhhCccceE
Confidence            99999889999999999999998887654

>PLN02222 phosphoinositide phospholipase C 2

Probab=99.32  E-value=5.5e-11  Score=95.48  Aligned_cols=96  Identities=28%  Similarity=0.396  Sum_probs=78.9

Q ss_pred             ceEEEEEEEEeecCC--CCC-----CCCCCcEEEEEEC-----CEEEEeeeeeCCCCCeEeceEEEEeeCCCc-eEEEEE
Q 031185            5 FGQLKVTVVQGKRLV--IRD-----FKSSDPYVVLKLG-----NQMAKTKVINSCLNPVWNEEHSLSLTEPVG-VLSLEV   71 (164)
Q Consensus         5 ~~~L~v~i~~a~~L~--~~~-----~~~~dpyv~v~~~-----~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~-~L~v~v   71 (164)
                      ...|.|+|+.|.+++  ...     ....||||++.+.     ..+.+|+++.++.+|.|+|+|.|.+..+.- .|.+.|
T Consensus       451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V  530 (581)
T PLN02222        451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEV  530 (581)
T ss_pred             cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEE
Confidence            357999999998743  111     2457999999993     345789999998999999999999887654 788999


Q ss_pred             EEcCCCCCCCeeEEEEEeCcccccceeee
Q 031185           72 FDKDRFKADDKMGKAYLNLQPIISAARLR  100 (164)
Q Consensus        72 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~  100 (164)
                      +|+|..+.++|+|+..+++..+..+.++-
T Consensus       531 ~d~D~~~~ddfigq~~lPv~~Lr~GyR~V  559 (581)
T PLN02222        531 HEYDMSEKDDFGGQTCLPVWELSQGIRAF  559 (581)
T ss_pred             EECCCCCCCcEEEEEEcchhhhhCccceE
Confidence            99998888999999999999998887643

>PLN02228 Phosphoinositide phospholipase C

Probab=99.30  E-value=9.2e-11  Score=94.01  Aligned_cols=95  Identities=24%  Similarity=0.343  Sum_probs=78.2

Q ss_pred             eEEEEEEEEeecCCC---CC----CCCCCcEEEEEEC-----CEEEEeeeeeCCCCCeE-eceEEEEeeCCCc-eEEEEE
Q 031185            6 GQLKVTVVQGKRLVI---RD----FKSSDPYVVLKLG-----NQMAKTKVINSCLNPVW-NEEHSLSLTEPVG-VLSLEV   71 (164)
Q Consensus         6 ~~L~v~i~~a~~L~~---~~----~~~~dpyv~v~~~-----~~~~~T~~~~~t~~P~w-~e~~~f~~~~~~~-~L~v~v   71 (164)
                      ..|.|+|++|++|+.   .+    ....||||++.+.     ...++|+++.++.+|.| +|+|.|.+..+.- .|.+.|
T Consensus       431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~V  510 (567)
T PLN02228        431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFKV  510 (567)
T ss_pred             ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEEE
Confidence            479999999998732   11    2347999999983     34578999988899999 9999999887654 788999


Q ss_pred             EEcCCCCCCCeeEEEEEeCcccccceeee
Q 031185           72 FDKDRFKADDKMGKAYLNLQPIISAARLR  100 (164)
Q Consensus        72 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~  100 (164)
                      +|++..+.++|+|++.+++..+..+.++-
T Consensus       511 ~D~d~~~~d~figq~~lPv~~Lr~GYR~V  539 (567)
T PLN02228        511 QDYDNDTQNDFAGQTCLPLPELKSGVRAV  539 (567)
T ss_pred             EeCCCCCCCCEEEEEEcchhHhhCCeeEE
Confidence            99998888999999999999998887654

>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae

Probab=99.30  E-value=2.2e-11  Score=76.53  Aligned_cols=86  Identities=24%  Similarity=0.356  Sum_probs=72.1

Q ss_pred             EEEEEEEeecCCCCC----CCCCCcEEEEEECCE-EEEeeeeeCCCCCeEeceEEEEeeCCCceEEEEEEEcCCCCCCCe
Q 031185            8 LKVTVVQGKRLVIRD----FKSSDPYVVLKLGNQ-MAKTKVINSCLNPVWNEEHSLSLTEPVGVLSLEVFDKDRFKADDK   82 (164)
Q Consensus         8 L~v~i~~a~~L~~~~----~~~~dpyv~v~~~~~-~~~T~~~~~t~~P~w~e~~~f~~~~~~~~L~v~v~d~~~~~~d~~   82 (164)
                      |.|+|..|+++....    .+.++||+.+++++. +.+|++   +.||.|||+|.|++.. ...+.+.|||...- ..-.
T Consensus         1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~---srnd~WnE~F~i~Vdk-~nEiel~VyDk~~~-~~~P   75 (109)
T cd08689           1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP---SRNDRWNEDFEIPVEK-NNEEEVIVYDKGGD-QPVP   75 (109)
T ss_pred             CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC---CCCCcccceEEEEecC-CcEEEEEEEeCCCC-eecc
Confidence            678999999998766    567899999999876 788877   4799999999999954 57999999998654 4568


Q ss_pred             eEEEEEeCccccccee
Q 031185           83 MGKAYLNLQPIISAAR   98 (164)
Q Consensus        83 lG~~~i~l~~l~~~~~   98 (164)
                      +|...+.++++.+.-+
T Consensus        76 i~llW~~~sdi~Ee~R   91 (109)
T cd08689          76 VGLLWLRLSDIAEEIR   91 (109)
T ss_pred             eeeehhhHHHHHHHHH
Confidence            9999999999887644

This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]

Probab=99.21  E-value=3.6e-11  Score=95.12  Aligned_cols=92  Identities=27%  Similarity=0.521  Sum_probs=83.2

Q ss_pred             ceEEEEEEEEeecCCCCC--CCCCCcEEEEEECCEEEEeeeeeCCCCCeEe-ceEEEEeeCCC---ceEEEEEEEcCCCC
Q 031185            5 FGQLKVTVVQGKRLVIRD--FKSSDPYVVLKLGNQMAKTKVINSCLNPVWN-EEHSLSLTEPV---GVLSLEVFDKDRFK   78 (164)
Q Consensus         5 ~~~L~v~i~~a~~L~~~~--~~~~dpyv~v~~~~~~~~T~~~~~t~~P~w~-e~~~f~~~~~~---~~L~v~v~d~~~~~   78 (164)
                      .|.|-|+|..|++||.++  ....|.|+.+++++..++|.+..+++||.|| +.|.|++....   ..|.+.+.|++..+
T Consensus         2 pgkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dtys   81 (1169)
T KOG1031|consen    2 PGKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTYS   81 (1169)
T ss_pred             CCcceeEEEeccCCcccccccccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecccccc
Confidence            578999999999999999  6678999999999999999999999999999 77899988653   38999999999999


Q ss_pred             CCCeeEEEEEeCcccccc
Q 031185           79 ADDKMGKAYLNLQPIISA   96 (164)
Q Consensus        79 ~d~~lG~~~i~l~~l~~~   96 (164)
                      .+|-||.+.|+++.+.-.
T Consensus        82 andaigkv~i~idpl~~e   99 (1169)
T KOG1031|consen   82 ANDAIGKVNIDIDPLCLE   99 (1169)
T ss_pred             cccccceeeeccChHHHH
Confidence            999999999999977543

>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]

Probab=99.10  E-value=7.9e-10  Score=90.24  Aligned_cols=94  Identities=24%  Similarity=0.381  Sum_probs=79.0

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCcEEEEEECC------EEEEeeeeeCCCCCeEe-ceEEEEeeCCCc-eEEEEEEEcCC
Q 031185            5 FGQLKVTVVQGKRLVIRDFKSSDPYVVLKLGN------QMAKTKVINSCLNPVWN-EEHSLSLTEPVG-VLSLEVFDKDR   76 (164)
Q Consensus         5 ~~~L~v~i~~a~~L~~~~~~~~dpyv~v~~~~------~~~~T~~~~~t~~P~w~-e~~~f~~~~~~~-~L~v~v~d~~~   76 (164)
                      ...|.|.|+.|+.|+..+-+-..|||++.+-+      ..++|.+..+++||.|+ +.|.|.+..+.- .|.+.|++.|.
T Consensus      1064 p~~lsv~vigaRHL~k~gr~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDm 1143 (1267)
T KOG1264|consen 1064 PMTLSVKVLGARHLPKLGRSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDM 1143 (1267)
T ss_pred             ceEEEEEEeeccccccCCCCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEecccc
Confidence            35789999999999866555667999999832      34566777889999999 999999998754 88999999999


Q ss_pred             CCCCCeeEEEEEeCccccccee
Q 031185           77 FKADDKMGKAYLNLQPIISAAR   98 (164)
Q Consensus        77 ~~~d~~lG~~~i~l~~l~~~~~   98 (164)
                      ++...|||++..++..+..+-+
T Consensus      1144 fs~~~FiaqA~yPv~~ik~GfR 1165 (1267)
T KOG1264|consen 1144 FSDPNFLAQATYPVKAIKSGFR 1165 (1267)
T ss_pred             cCCcceeeeeecchhhhhccce
Confidence            9888899999999998877644

>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=99.09  E-value=3.2e-11  Score=97.16  Aligned_cols=91  Identities=33%  Similarity=0.518  Sum_probs=80.4

Q ss_pred             ceEEEEEEEEeecCCCCC-CCCCCcEEEEEECCE-------EEEeeeeeCCCCCeEeceEEEEeeCCCc-----eEEEEE
Q 031185            5 FGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGNQ-------MAKTKVINSCLNPVWNEEHSLSLTEPVG-----VLSLEV   71 (164)
Q Consensus         5 ~~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~~~-------~~~T~~~~~t~~P~w~e~~~f~~~~~~~-----~L~v~v   71 (164)
                      ...|.|.|+.|+++.+-| +|.+||||++.+...       .++|+++.+|+||+|+|.|.|.++....     .+.++|
T Consensus       946 ~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am~~FTV 1025 (1103)
T KOG1328|consen  946 AQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAMLHFTV 1025 (1103)
T ss_pred             ccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccccccccceEEEEe
Confidence            446778899999999999 999999999999654       3799999999999999999999986532     789999


Q ss_pred             EEcCCCCCCCeeEEEEEeCccccc
Q 031185           72 FDKDRFKADDKMGKAYLNLQPIIS   95 (164)
Q Consensus        72 ~d~~~~~~d~~lG~~~i~l~~l~~   95 (164)
                      +|+|.++.+||-|++.+.|+++..
T Consensus      1026 MDHD~L~sNDFaGEA~L~Lg~vpG 1049 (1103)
T KOG1328|consen 1026 MDHDYLRSNDFAGEAFLELGDVPG 1049 (1103)
T ss_pred             eccceecccccchHHHHhhCCCCC
Confidence            999999999999999999998754

>PLN02352 phospholipase D epsilon

Probab=98.89  E-value=2.9e-08  Score=81.84  Aligned_cols=97  Identities=19%  Similarity=0.358  Sum_probs=74.4

Q ss_pred             cceEEEEEEEEeecCCCC----C--CCCCCcEEEEEECCEE-EEeeeeeCCCCCeEeceEEEEeeCCC-ceEEEEEEEcC
Q 031185            4 PFGQLKVTVVQGKRLVIR----D--FKSSDPYVVLKLGNQM-AKTKVINSCLNPVWNEEHSLSLTEPV-GVLSLEVFDKD   75 (164)
Q Consensus         4 ~~~~L~v~i~~a~~L~~~----~--~~~~dpyv~v~~~~~~-~~T~~~~~t~~P~w~e~~~f~~~~~~-~~L~v~v~d~~   75 (164)
                      ..|.|.++|.+|+-+...    .  ....+||+.+.+++.+ .+|   .+..||.|+|+|.+++.... ..+.+.|.|  
T Consensus         8 lhg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~--   82 (758)
T PLN02352          8 FHGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT--   82 (758)
T ss_pred             cccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEec--
Confidence            568999999999843221    1  1123999999998765 577   56669999999999998876 589999988  


Q ss_pred             CCCCCCeeEEEEEeCccccccee-eeEEEEecCC
Q 031185           76 RFKADDKMGKAYLNLQPIISAAR-LRHLVHVSSG  108 (164)
Q Consensus        76 ~~~~d~~lG~~~i~l~~l~~~~~-~~~~~~l~~~  108 (164)
                         .-.+||.+.+++.++..+.. .+.|+++...
T Consensus        83 ---~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~  113 (758)
T PLN02352         83 ---KCSILGRFHIQAHQIVTEASFINGFFPLIME  113 (758)
T ss_pred             ---CCeEEEEEEEEHHHhhCCCcccceEEEcccC
Confidence               25699999999999988755 6666666543

>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=98.87  E-value=3.8e-10  Score=91.13  Aligned_cols=101  Identities=24%  Similarity=0.428  Sum_probs=76.8

Q ss_pred             ceEEEEEEEEeecCCCCC-CCCCCcEEEEEECC-------------E------------------EEEeeeeeCCCCCeE
Q 031185            5 FGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGN-------------Q------------------MAKTKVINSCLNPVW   52 (164)
Q Consensus         5 ~~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~~-------------~------------------~~~T~~~~~t~~P~w   52 (164)
                      .-.+.|.+.+|.+|..++ .|.+|||+...+-.             +                  .+-|.+.+.|+||.|
T Consensus       113 ~~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~TLnPkW  192 (1103)
T KOG1328|consen  113 SVLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKTLNPKW  192 (1103)
T ss_pred             cHHHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccccCCcch
Confidence            334566778899999999 99999999987711             0                  134778888999999


Q ss_pred             eceEEEEeeCCCc-eEEEEEEEcCCC---------------------------------C---CCCeeEEEEEeCccccc
Q 031185           53 NEEHSLSLTEPVG-VLSLEVFDKDRF---------------------------------K---ADDKMGKAYLNLQPIIS   95 (164)
Q Consensus        53 ~e~~~f~~~~~~~-~L~v~v~d~~~~---------------------------------~---~d~~lG~~~i~l~~l~~   95 (164)
                      +|.|.|.+..-.. .+.+-+||+|.-                                 +   .|||+|.+.|++.++..
T Consensus       193 ~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~EiP~  272 (1103)
T KOG1328|consen  193 SEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLAEIPP  272 (1103)
T ss_pred             hhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchhcCCc
Confidence            9999999987644 899999998763                                 2   38999999999998865


Q ss_pred             ceeeeEEEEec
Q 031185           96 AARLRHLVHVS  106 (164)
Q Consensus        96 ~~~~~~~~~l~  106 (164)
                      .+ .+.||.|.
T Consensus       273 ~G-ld~WFkLe  282 (1103)
T KOG1328|consen  273 DG-LDQWFKLE  282 (1103)
T ss_pred             ch-HHHHhccC
Confidence            42 33344443

>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]

Probab=98.83  E-value=2.8e-09  Score=89.87  Aligned_cols=103  Identities=21%  Similarity=0.222  Sum_probs=85.1

Q ss_pred             ceEEEEEEEEeecCCCCC-CCCCCcEEEEEECC-----EEEEeeeeeCCCCCeEeceEEEEeeCC----CceEEEEEEEc
Q 031185            5 FGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGN-----QMAKTKVINSCLNPVWNEEHSLSLTEP----VGVLSLEVFDK   74 (164)
Q Consensus         5 ~~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~~-----~~~~T~~~~~t~~P~w~e~~~f~~~~~----~~~L~v~v~d~   74 (164)
                      .|+|.|.|..|++|+.-. +..+||||+.++..     .+++|+++++|.+|.|||.+.+.-...    ...|.++||..
T Consensus      1523 ~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~ 1602 (1639)
T KOG0905|consen 1523 NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLSN 1602 (1639)
T ss_pred             CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeecc
Confidence            578999999999996555 77899999999932     358999999999999999998873322    14899999999


Q ss_pred             CCCCCCCeeEEEEEeCcccccceeeeEEEEecC
Q 031185           75 DRFKADDKMGKAYLNLQPIISAARLRHLVHVSS  107 (164)
Q Consensus        75 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~  107 (164)
                      +.+..+.|+|.+.|+|..+...++...||.|..
T Consensus      1603 ~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~lg~ 1635 (1639)
T KOG0905|consen 1603 GGLLENVFLGGVNIPLLKVDLLKESVGWYNLGA 1635 (1639)
T ss_pred             cceeeeeeeeeeecchhhcchhhhhcceeeccc
Confidence            999889999999999999877776666766653

>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.83  E-value=1.9e-08  Score=80.84  Aligned_cols=103  Identities=21%  Similarity=0.220  Sum_probs=89.0

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCcEEEEEEC-------CEEEEeeeeeCCCCCeEeceEEEEeeCCCc----eEEEEEEEc
Q 031185            6 GQLKVTVVQGKRLVIRDFKSSDPYVVLKLG-------NQMAKTKVINSCLNPVWNEEHSLSLTEPVG----VLSLEVFDK   74 (164)
Q Consensus         6 ~~L~v~i~~a~~L~~~~~~~~dpyv~v~~~-------~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~----~L~v~v~d~   74 (164)
                      ..++|+|+.|.+|.....|...||+.+.+-       +.++.|++..++-.|.+||+|.|-+.+...    +|.+.|.|+
T Consensus      1125 hkvtvkvvaandlkwqtsgmFrPFVEV~ivGP~lsDKKRK~~TKtKsnnWaPKyNEtF~f~Lg~e~~Pe~YEL~~~VKDY 1204 (1283)
T KOG1011|consen 1125 HKVTVKVVAANDLKWQTSGMFRPFVEVHIVGPHLSDKKRKFSTKTKSNNWAPKYNETFHFFLGNEGGPEHYELQFCVKDY 1204 (1283)
T ss_pred             ceEEEEEEecccccchhccccccceEEEEecCcccchhhhccccccCCCcCcccCceeEEEeccCCCCceEEEEEeehhh
Confidence            457899999999987767888999999982       234788899999999999999999876543    899999999


Q ss_pred             CCCCCCCeeEEEEEeCcccccceeeeEEEEecCC
Q 031185           75 DRFKADDKMGKAYLNLQPIISAARLRHLVHVSSG  108 (164)
Q Consensus        75 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~  108 (164)
                      ...+.|..+|.+.++|.++...+....|++|...
T Consensus      1205 CFAReDRvvGl~VlqL~~va~kGS~a~W~pLgrr 1238 (1283)
T KOG1011|consen 1205 CFAREDRVVGLAVLQLRSVADKGSCACWVPLGRR 1238 (1283)
T ss_pred             eeecccceeeeeeeehhhHhhcCceeEeeecccc
Confidence            9888899999999999999999999999988643

>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]

Probab=98.79  E-value=3.9e-09  Score=87.71  Aligned_cols=89  Identities=31%  Similarity=0.444  Sum_probs=79.4

Q ss_pred             cceEEEEEEEEeecCCCCC-CCCCCcEEEEEECCEE--EEeeeeeCCCCCeEeceEEEEeeCCCc-eEEEEEEEcCCCCC
Q 031185            4 PFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGNQM--AKTKVINSCLNPVWNEEHSLSLTEPVG-VLSLEVFDKDRFKA   79 (164)
Q Consensus         4 ~~~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~~~~--~~T~~~~~t~~P~w~e~~~f~~~~~~~-~L~v~v~d~~~~~~   79 (164)
                      ....++|++++|.+|.+.| .|.+|||+.+.++++.  -++..+.+++||+|.+.|.+...-+.. .+.++|||+|..+.
T Consensus       611 i~~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~~  690 (1105)
T KOG1326|consen  611 IKCLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEAQ  690 (1105)
T ss_pred             ceeeEEEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeecccc
Confidence            4456789999999999999 9999999999999877  567788999999999999988776654 88999999999999


Q ss_pred             CCeeEEEEEeCcc
Q 031185           80 DDKMGKAYLNLQP   92 (164)
Q Consensus        80 d~~lG~~~i~l~~   92 (164)
                      |+.||+..++|++
T Consensus       691 d~~iget~iDLEn  703 (1105)
T KOG1326|consen  691 DEKIGETTIDLEN  703 (1105)
T ss_pred             cchhhceehhhhh
Confidence            9999999999885

>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]

Probab=98.78  E-value=6.9e-09  Score=83.62  Aligned_cols=100  Identities=15%  Similarity=0.174  Sum_probs=76.8

Q ss_pred             EEEEEEEeecCCCCCCCCCCcEEEEEECCEE----EEeeeeeCCCCCeEeceEEEEeeCC---------------C-ceE
Q 031185            8 LKVTVVQGKRLVIRDFKSSDPYVVLKLGNQM----AKTKVINSCLNPVWNEEHSLSLTEP---------------V-GVL   67 (164)
Q Consensus         8 L~v~i~~a~~L~~~~~~~~dpyv~v~~~~~~----~~T~~~~~t~~P~w~e~~~f~~~~~---------------~-~~L   67 (164)
                      +.+.+.+++++-+..++.+|||+.+...+..    .+|++.+.|.+|.|+|.|.|.+...               . ..|
T Consensus       133 ~~c~~L~~r~~~P~~~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~i  212 (800)
T KOG2059|consen  133 LVCHVLKTRQGLPIINGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEI  212 (800)
T ss_pred             chhhhhhhcccCceeCCCCCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCceeeE
Confidence            3344555566555556679999999985443    5999999999999999999998755               1 278


Q ss_pred             EEEEEE-cCCCCCCCeeEEEEEeCcccccceeeeEEEEecC
Q 031185           68 SLEVFD-KDRFKADDKMGKAYLNLQPIISAARLRHLVHVSS  107 (164)
Q Consensus        68 ~v~v~d-~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~  107 (164)
                      .+.+|+ ++...+++|+|++.+++..+........||.|..
T Consensus       213 rv~lW~~~~~~~~~~FlGevrv~v~~~~~~s~p~~W~~Lqp  253 (800)
T KOG2059|consen  213 RVDLWNDLNLVINDVFLGEVRVPVDVLRQKSSPAAWYYLQP  253 (800)
T ss_pred             EEeeccchhhhhhhhhceeEEeehhhhhhccCccceEEEec
Confidence            899999 5555569999999999998886666666766643

>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.40  E-value=5.1e-07  Score=67.33  Aligned_cols=85  Identities=31%  Similarity=0.327  Sum_probs=72.2

Q ss_pred             cceEEEEEEEEeecCCCCC-CCCCCcEEEEEECC-----EEEEeeeeeCCCCCeEeceEEEEeeCCCc---eEEEEEEEc
Q 031185            4 PFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGN-----QMAKTKVINSCLNPVWNEEHSLSLTEPVG---VLSLEVFDK   74 (164)
Q Consensus         4 ~~~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~~-----~~~~T~~~~~t~~P~w~e~~~f~~~~~~~---~L~v~v~d~   74 (164)
                      ....|.|+++++..|..++ .+.+|||+..++..     .+++|.+.+++.+|.|+++|.|.+.....   .+.|.|||.
T Consensus       231 ~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~  310 (362)
T KOG1013|consen  231 TTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSVGDY  310 (362)
T ss_pred             CCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcceEEEeeccc
Confidence            4566899999999999999 89999999999842     34889999999999999999999887643   889999999


Q ss_pred             CCCCCCCeeEEEEE
Q 031185           75 DRFKADDKMGKAYL   88 (164)
Q Consensus        75 ~~~~~d~~lG~~~i   88 (164)
                      +.-...+++|-...
T Consensus       311 ~~G~s~d~~GG~~~  324 (362)
T KOG1013|consen  311 DIGKSNDSIGGSML  324 (362)
T ss_pred             CCCcCccCCCcccc
Confidence            98877888887543

>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]

Probab=98.36  E-value=4.1e-07  Score=69.72  Aligned_cols=102  Identities=22%  Similarity=0.375  Sum_probs=80.3

Q ss_pred             EEEEEEEEeecCCCCC-CCCCCcEEEEEEC-----CEEEEeeeeeCCCCCeEeceEEEEeeCCC------------ceEE
Q 031185            7 QLKVTVVQGKRLVIRD-FKSSDPYVVLKLG-----NQMAKTKVINSCLNPVWNEEHSLSLTEPV------------GVLS   68 (164)
Q Consensus         7 ~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~-----~~~~~T~~~~~t~~P~w~e~~~f~~~~~~------------~~L~   68 (164)
                      .|.+.|+++.+++... -.-.|.|+.+.+.     .++.+|.+++.+.+|.|+|.|.+.+....            ..++
T Consensus       368 elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~k  447 (523)
T KOG3837|consen  368 ELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGKK  447 (523)
T ss_pred             HhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCee
Confidence            3556677777765543 2234778887762     34578999999999999999999987621            1689


Q ss_pred             EEEEEcCCC-CCCCeeEEEEEeCcccccceeeeEEEEecCC
Q 031185           69 LEVFDKDRF-KADDKMGKAYLNLQPIISAARLRHLVHVSSG  108 (164)
Q Consensus        69 v~v~d~~~~-~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~  108 (164)
                      |++|++..+ ..|.++|.+.+.+..+......+.+++|.+|
T Consensus       448 feifhkggf~rSdkl~gt~nikle~Len~cei~e~~~l~DG  488 (523)
T KOG3837|consen  448 FEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEYLPLKDG  488 (523)
T ss_pred             EEEeeccccccccceeceeeeeehhhhcccchhhceecccc
Confidence            999998865 5688999999999999999998889899888

>PLN02964 phosphatidylserine decarboxylase

Probab=98.33  E-value=1.2e-06  Score=71.77  Aligned_cols=91  Identities=23%  Similarity=0.377  Sum_probs=76.0

Q ss_pred             CCcceEEEEEEEEeecCCCCCCCCCCcE-EEEEECCEEEEeeeeeCCCCCeEeceEEEEeeCCCc-eEEEEEEEcCCCCC
Q 031185            2 RQPFGQLKVTVVQGKRLVIRDFKSSDPY-VVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEPVG-VLSLEVFDKDRFKA   79 (164)
Q Consensus         2 ~~~~~~L~v~i~~a~~L~~~~~~~~dpy-v~v~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~-~L~v~v~d~~~~~~   79 (164)
                      ++..|.+.+++++|+    ++  ..|+| +.+.++.+.++|.+.++|.+|+||+...|.+..... ...+.|||.+.+++
T Consensus        50 ~~~~~~~~~~~~~~~----~~--~~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  123 (644)
T PLN02964         50 EDFSGIALLTLVGAE----MK--FKDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNRLSK  123 (644)
T ss_pred             ccccCeEEEEeehhh----hc--cCCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCCCCH
Confidence            467889999999986    22  24776 567779999999999999999999999998886654 55899999999999


Q ss_pred             CCeeEEEEEeCccccccee
Q 031185           80 DDKMGKAYLNLQPIISAAR   98 (164)
Q Consensus        80 d~~lG~~~i~l~~l~~~~~   98 (164)
                      ++++|.++++|.++...+.
T Consensus       124 n~lv~~~e~~~t~f~~kqi  142 (644)
T PLN02964        124 NTLVGYCELDLFDFVTQEP  142 (644)
T ss_pred             HHhhhheeecHhhccHHHH
Confidence            9999999998887766643

>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins

Probab=98.12  E-value=1.1e-05  Score=52.74  Aligned_cols=91  Identities=18%  Similarity=0.342  Sum_probs=67.5

Q ss_pred             EEEEEEEeecCCCCC--------------CCCCCcEEEEEE----CCEEEEeeeeeCCCCCeEeceEEEEee--------
Q 031185            8 LKVTVVQGKRLVIRD--------------FKSSDPYVVLKL----GNQMAKTKVINSCLNPVWNEEHSLSLT--------   61 (164)
Q Consensus         8 L~v~i~~a~~L~~~~--------------~~~~dpyv~v~~----~~~~~~T~~~~~t~~P~w~e~~~f~~~--------   61 (164)
                      |.|.|++|.+|+...              .-.-|+|+.+.+    +++..+|+++.++.-|.|+.++.|.++        
T Consensus         1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G   80 (143)
T cd08683           1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG   80 (143)
T ss_pred             CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence            356778888776221              112489999996    456799999999999999999999876        


Q ss_pred             CC--------CceEEEEEEEcCCC----------CCCCeeEEEEEeCccccccee
Q 031185           62 EP--------VGVLSLEVFDKDRF----------KADDKMGKAYLNLQPIISAAR   98 (164)
Q Consensus        62 ~~--------~~~L~v~v~d~~~~----------~~d~~lG~~~i~l~~l~~~~~   98 (164)
                      ..        ...+.++||+...-          .+|-+||.+.|++.++.....
T Consensus        81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rs  135 (143)
T cd08683          81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRS  135 (143)
T ss_pred             ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhccc
Confidence            10        12789999986643          234589999999999877643

C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc

>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=98.03  E-value=9.4e-06  Score=49.47  Aligned_cols=85  Identities=14%  Similarity=0.131  Sum_probs=63.7

Q ss_pred             EEEEEeecCCCCC--CCCCCcEEEEEE--C-CEEEEeeeeeCCCCCeEeceEEEEeeCCC---ceEEEEEEEcCCCCCCC
Q 031185           10 VTVVQGKRLVIRD--FKSSDPYVVLKL--G-NQMAKTKVINSCLNPVWNEEHSLSLTEPV---GVLSLEVFDKDRFKADD   81 (164)
Q Consensus        10 v~i~~a~~L~~~~--~~~~dpyv~v~~--~-~~~~~T~~~~~t~~P~w~e~~~f~~~~~~---~~L~v~v~d~~~~~~d~   81 (164)
                      ++++.+++|....  ...+..|++--+  . ...++|.+.+...||.|.|+|.|.+....   -.|-+.|+.  .+.+.+
T Consensus         3 itv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~RKe   80 (103)
T cd08684           3 ITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTPRKR   80 (103)
T ss_pred             EEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec--cCCccc
Confidence            6888999987665  334445665433  2 34589999999999999999999876432   288899998  444778


Q ss_pred             eeEEEEEeCcccccc
Q 031185           82 KMGKAYLNLQPIISA   96 (164)
Q Consensus        82 ~lG~~~i~l~~l~~~   96 (164)
                      .||.+.+.++++-+.
T Consensus        81 ~iG~~sL~l~s~gee   95 (103)
T cd08684          81 TIGECSLSLRTLSTQ   95 (103)
T ss_pred             eeeEEEeecccCCHH
Confidence            999999999976544

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos

>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]

Probab=98.01  E-value=1.2e-06  Score=73.45  Aligned_cols=101  Identities=23%  Similarity=0.319  Sum_probs=78.8

Q ss_pred             EEEEEEEEeecCCCCC-CCCCCcEEEEEECCEEEEeeeeeCCCCCeEeceEEEEeeC----------CCceEEEEEEEcC
Q 031185            7 QLKVTVVQGKRLVIRD-FKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTE----------PVGVLSLEVFDKD   75 (164)
Q Consensus         7 ~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~----------~~~~L~v~v~d~~   75 (164)
                      .++++|.+|+.|...+ .+.+|||+.+.+.++.+.|.++.+|++|.|+.+..|.-..          ....+.+++||.+
T Consensus       207 ~lR~yiyQar~L~a~dk~~~sdp~a~v~f~~qs~~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e~yd~d  286 (1105)
T KOG1326|consen  207 PLRSYIYQARALGAPDKDDESDPDAAVEFCGQSKETEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFEVYDLD  286 (1105)
T ss_pred             hhHHHHHHHHhhcCCCcccCCCchhhhhcccccceeEeecCcCCCCccceeeccceeecCccchhhcCCCeEEEEeehhh
Confidence            4567788899998888 7889999999999999999999999999999999885221          1126789999999


Q ss_pred             CCCCCCeeEEEEEeCcccccceeeeEEEEecCC
Q 031185           76 RFKADDKMGKAYLNLQPIISAARLRHLVHVSSG  108 (164)
Q Consensus        76 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~  108 (164)
                      ..+.++|+|+......-+.. .....|+++..+
T Consensus       287 r~g~~ef~gr~~~~p~V~~~-~p~lkw~p~~rg  318 (1105)
T KOG1326|consen  287 RSGINEFKGRKKQRPYVMVQ-CPALKWVPTMRG  318 (1105)
T ss_pred             hhchHHhhcccccceEEEec-CCccceEEeecc
Confidence            99999999998766554433 333345555433

>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.01  E-value=9.1e-07  Score=66.00  Aligned_cols=94  Identities=29%  Similarity=0.347  Sum_probs=76.9

Q ss_pred             ceEEEEEEEEeecCCCCC-CCCCCcEEEEEECC-----EEEEeeeeeCCCCCeEeceEEEEeeCCC----ceEEEEEEEc
Q 031185            5 FGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGN-----QMAKTKVINSCLNPVWNEEHSLSLTEPV----GVLSLEVFDK   74 (164)
Q Consensus         5 ~~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~~-----~~~~T~~~~~t~~P~w~e~~~f~~~~~~----~~L~v~v~d~   74 (164)
                      ..++.++|..|.+|.+++ .+..|||+...+..     .+.+|++..++.||.|+|+.....-...    ..+.+.|.|+
T Consensus        92 ~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~~Rk~vcdn  171 (362)
T KOG1013|consen   92 SRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTHLKVLRKVVCDN  171 (362)
T ss_pred             hhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhhhhhhheeeccC
Confidence            456889999999999999 88999999999843     2378889999999999998776643222    2778899999


Q ss_pred             CCCCCCCeeEEEEEeCccccccee
Q 031185           75 DRFKADDKMGKAYLNLQPIISAAR   98 (164)
Q Consensus        75 ~~~~~d~~lG~~~i~l~~l~~~~~   98 (164)
                      +.+..++++|+..+++..+...+.
T Consensus       172 ~~~~~~~sqGq~r~~lkKl~p~q~  195 (362)
T KOG1013|consen  172 DKKTHNESQGQSRVSLKKLKPLQR  195 (362)
T ss_pred             cccccccCcccchhhhhccChhhc
Confidence            999889999999988887766544

>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.98  E-value=3.7e-06  Score=63.80  Aligned_cols=103  Identities=23%  Similarity=0.337  Sum_probs=82.6

Q ss_pred             cceEEEEEEEEeecCCCCC--CCCCCcEEEEEECC-----EEEEeeeeeCCCCCeEeceEEEEeeCCCceEEEEEE-EcC
Q 031185            4 PFGQLKVTVVQGKRLVIRD--FKSSDPYVVLKLGN-----QMAKTKVINSCLNPVWNEEHSLSLTEPVGVLSLEVF-DKD   75 (164)
Q Consensus         4 ~~~~L~v~i~~a~~L~~~~--~~~~dpyv~v~~~~-----~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~L~v~v~-d~~   75 (164)
                      ..|.+.|.|++|++|..+.  ...++||++|++.+     .+.+|+...+|..|.+..+..|.-..+...|.+.|| |..
T Consensus       267 ~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp~~k~Lq~tv~gdyg  346 (405)
T KOG2060|consen  267 SKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSPPGKYLQGTVWGDYG  346 (405)
T ss_pred             ccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCCCccEEEEEEecccc
Confidence            4678999999999998776  33689999999943     247899999999999999999998888889999999 467


Q ss_pred             CCCCCCeeEEEEEeCcccccce-eeeEEEEec
Q 031185           76 RFKADDKMGKAYLNLQPIISAA-RLRHLVHVS  106 (164)
Q Consensus        76 ~~~~d~~lG~~~i~l~~l~~~~-~~~~~~~l~  106 (164)
                      .+..+.|+|.+++-+.++-... ....||.+.
T Consensus       347 Rmd~k~fmg~aqi~l~eL~ls~~~~igwyKlf  378 (405)
T KOG2060|consen  347 RMDHKSFMGVAQIMLDELNLSSSPVIGWYKLF  378 (405)
T ss_pred             ccchHHHhhHHHHHhhhhccccccceeeeecc
Confidence            7777889999999999885554 333444443

>KOG1327 consensus Copine [Signal transduction mechanisms]

Probab=97.83  E-value=4e-05  Score=61.14  Aligned_cols=83  Identities=29%  Similarity=0.485  Sum_probs=66.7

Q ss_pred             EEEeecCCCCC-CCCCCcEEEEEE--CC----EEEEeeeeeCCCCCeEeceEEEEee-----CCCceEEEEEEEcCCCCC
Q 031185           12 VVQGKRLVIRD-FKSSDPYVVLKL--GN----QMAKTKVINSCLNPVWNEEHSLSLT-----EPVGVLSLEVFDKDRFKA   79 (164)
Q Consensus        12 i~~a~~L~~~~-~~~~dpyv~v~~--~~----~~~~T~~~~~t~~P~w~e~~~f~~~-----~~~~~L~v~v~d~~~~~~   79 (164)
                      ..+|.+|..++ ++++|||..+.-  +.    ..++|.+++++++|.|.+ |.+...     .....+.+.+||++..++
T Consensus       142 ~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~~~~  220 (529)
T KOG1327|consen  142 SFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDSNGK  220 (529)
T ss_pred             eeeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcccc-cccchhhhcccCCCCceEEEEeccCCCCC
Confidence            34578888888 999999998765  22    238999999999999998 554433     223488899999999989


Q ss_pred             CCeeEEEEEeCccccc
Q 031185           80 DDKMGKAYLNLQPIIS   95 (164)
Q Consensus        80 d~~lG~~~i~l~~l~~   95 (164)
                      ++++|.+..++..+..
T Consensus       221 ~~~ig~~~tt~~~~~~  236 (529)
T KOG1327|consen  221 HDLIGKFQTTLSELQE  236 (529)
T ss_pred             cCceeEecccHHHhcc
Confidence            9999999999998875

>PF15627 CEP76-C2: CEP76 C2 domain

Probab=97.74  E-value=0.0015  Score=44.48  Aligned_cols=96  Identities=16%  Similarity=0.205  Sum_probs=69.0

Q ss_pred             cceEEEEEEEEeecCCCCCC---CCCCc--EEEEEECCEEEEeeeeeCCCCCeEeceEEEEeeCCC--------------
Q 031185            4 PFGQLKVTVVQGKRLVIRDF---KSSDP--YVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEPV--------------   64 (164)
Q Consensus         4 ~~~~L~v~i~~a~~L~~~~~---~~~dp--yv~v~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~--------------   64 (164)
                      ..-.|++.|..++-.-..-.   +..+.  .+.+.+.+++++|+.+..+.+|.|+|.|-|++....              
T Consensus         7 ~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~   86 (156)
T PF15627_consen    7 GRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSIS   86 (156)
T ss_pred             CceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcCC
Confidence            44567888887764322111   33333  344555899999999999999999999999987553              


Q ss_pred             ceEEEEEEEcCCCCCCCeeEEEEEeCcccccceee
Q 031185           65 GVLSLEVFDKDRFKADDKMGKAYLNLQPIISAARL   99 (164)
Q Consensus        65 ~~L~v~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~   99 (164)
                      ..+.+.|..-+..+...++|...++...+...+..
T Consensus        87 ~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~~~  121 (156)
T PF15627_consen   87 DPIHIVLIRTDPSGETTLVGSHFLDWRKVLCSGNG  121 (156)
T ss_pred             CceEEEEEEecCCCceEeeeeceehHHHHhccCCC
Confidence            26778887777766668999999988877766543

>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks)

Probab=97.48  E-value=0.0051  Score=42.15  Aligned_cols=86  Identities=20%  Similarity=0.276  Sum_probs=60.4

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCcEEEEEE--CCEE----EEeeeeeCCCCCeEeceEEEEeeCCC----ceEEEEEEEc
Q 031185            5 FGQLKVTVVQGKRLVIRDFKSSDPYVVLKL--GNQM----AKTKVINSCLNPVWNEEHSLSLTEPV----GVLSLEVFDK   74 (164)
Q Consensus         5 ~~~L~v~i~~a~~L~~~~~~~~dpyv~v~~--~~~~----~~T~~~~~t~~P~w~e~~~f~~~~~~----~~L~v~v~d~   74 (164)
                      ...++|+|+.+.++...+  ..+-|+.+.+  +++.    ..|+.+.. .++.|||.+.|++.-..    ..|.+++|+.
T Consensus         7 ~~~~~v~i~~~~~~~~~~--~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~   83 (158)
T cd08398           7 NSNLRIKILCATYVNVND--IDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSV   83 (158)
T ss_pred             CCCeEEEEEeeccCCCCC--cCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEE
Confidence            346889999999987643  3578888766  4443    34444443 67999999999876332    2899999986


Q ss_pred             CCCC----CCCeeEEEEEeCccc
Q 031185           75 DRFK----ADDKMGKAYLNLQPI   93 (164)
Q Consensus        75 ~~~~----~d~~lG~~~i~l~~l   93 (164)
                      ....    ....+|.+.++|-+.
T Consensus        84 ~~~~~~k~~~~~iG~~ni~LFd~  106 (158)
T cd08398          84 KGRKGAKEEHCPLAWGNINLFDY  106 (158)
T ss_pred             ecccCCCCceEEEEEEEEEEECC
Confidence            5421    224699999998873

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c

>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks)

Probab=97.48  E-value=0.0039  Score=43.40  Aligned_cols=88  Identities=16%  Similarity=0.223  Sum_probs=61.6

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCcEEEEEE--CCEE----EEeeeeeCCCCCeEeceEEEEeeCCC----ceEEEEEEEc
Q 031185            5 FGQLKVTVVQGKRLVIRDFKSSDPYVVLKL--GNQM----AKTKVINSCLNPVWNEEHSLSLTEPV----GVLSLEVFDK   74 (164)
Q Consensus         5 ~~~L~v~i~~a~~L~~~~~~~~dpyv~v~~--~~~~----~~T~~~~~t~~P~w~e~~~f~~~~~~----~~L~v~v~d~   74 (164)
                      ...+.|+|..+.++...+ ...+-|+.+.+  +++.    ..|+.......+.|+|.+.|++.-..    ..|.|.||+.
T Consensus         7 ~~~f~i~i~~~~~~~~~~-~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~   85 (173)
T cd08693           7 EEKFSITLHKISNLNAAE-RTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEV   85 (173)
T ss_pred             CCCEEEEEEEeccCccCC-CCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEe
Confidence            346899999999997622 34566777655  5443    45655555677999999999865322    2899999986


Q ss_pred             CCCC----------------CCCeeEEEEEeCccc
Q 031185           75 DRFK----------------ADDKMGKAYLNLQPI   93 (164)
Q Consensus        75 ~~~~----------------~d~~lG~~~i~l~~l   93 (164)
                      ....                .+..||.+.++|-+.
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~  120 (173)
T cd08693          86 SKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDY  120 (173)
T ss_pred             cccccccccccccccccccCcceEEEEEeEEEEcc
Confidence            5321                246899999988874

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty

>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks)

Probab=97.42  E-value=0.0043  Score=42.36  Aligned_cols=88  Identities=17%  Similarity=0.211  Sum_probs=60.5

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCcEEEEEE--CCEE----EEeeeeeCCCCCeEeceEEEEeeCCC----ceEEEEEEEcC
Q 031185            6 GQLKVTVVQGKRLVIRDFKSSDPYVVLKL--GNQM----AKTKVINSCLNPVWNEEHSLSLTEPV----GVLSLEVFDKD   75 (164)
Q Consensus         6 ~~L~v~i~~a~~L~~~~~~~~dpyv~v~~--~~~~----~~T~~~~~t~~P~w~e~~~f~~~~~~----~~L~v~v~d~~   75 (164)
                      ..++|++....++...+....+-|+.+.+  +++.    ..|.....+.++.|||.+.|++.-..    ..|.+.+|+..
T Consensus         8 ~~~~i~i~~~~~~~~~~~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~   87 (156)
T cd08380           8 FNLRIKIHGITNINLLDSEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVS   87 (156)
T ss_pred             CCeEEEEEeeccccccCCCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEe
Confidence            45778888888776522334567777765  4442    34444433468999999999865322    28999999977


Q ss_pred             CCC--CCCeeEEEEEeCccc
Q 031185           76 RFK--ADDKMGKAYLNLQPI   93 (164)
Q Consensus        76 ~~~--~d~~lG~~~i~l~~l   93 (164)
                      ..+  .+..||.+.++|-+.
T Consensus        88 ~~~~~~~~~iG~~~~~lFd~  107 (156)
T cd08380          88 EPGSKKEVPLGWVNVPLFDY  107 (156)
T ss_pred             cCCCCcceEEEEEeEEeEcc
Confidence            553  457999999999874

C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks)

Probab=97.36  E-value=0.0057  Score=42.01  Aligned_cols=70  Identities=19%  Similarity=0.192  Sum_probs=52.6

Q ss_pred             CCCCcEEEEEE--CCEE----EEeeeeeCCCCCeEeceEEEEeeCCC----ceEEEEEEEcCCCCCCCeeEEEEEeCccc
Q 031185           24 KSSDPYVVLKL--GNQM----AKTKVINSCLNPVWNEEHSLSLTEPV----GVLSLEVFDKDRFKADDKMGKAYLNLQPI   93 (164)
Q Consensus        24 ~~~dpyv~v~~--~~~~----~~T~~~~~t~~P~w~e~~~f~~~~~~----~~L~v~v~d~~~~~~d~~lG~~~i~l~~l   93 (164)
                      ..++-|+.+.+  +++.    ..|....-+..+.|||.+.|++.-.+    ..|.|+||+....++...+|.+.++|-+.
T Consensus        28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~  107 (159)
T cd08397          28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK  107 (159)
T ss_pred             CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence            34678888876  4443    35655555778999999999876432    38999999987655667999999999875

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty

>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]

Probab=97.17  E-value=0.0026  Score=53.66  Aligned_cols=89  Identities=24%  Similarity=0.413  Sum_probs=67.4

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCcEEEEEECC-------EEEEeeeeeC-CCCCeEece-EEEE-eeCC-CceEEEEEEE
Q 031185            5 FGQLKVTVVQGKRLVIRDFKSSDPYVVLKLGN-------QMAKTKVINS-CLNPVWNEE-HSLS-LTEP-VGVLSLEVFD   73 (164)
Q Consensus         5 ~~~L~v~i~~a~~L~~~~~~~~dpyv~v~~~~-------~~~~T~~~~~-t~~P~w~e~-~~f~-~~~~-~~~L~v~v~d   73 (164)
                      .+.+.|+|+++.-|..+.   ...||.|.+-+       +.++|++... +.||.|+|. |.|. +..+ -..|.|.||+
T Consensus       702 A~t~sV~VISgqFLSdrk---vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavye  778 (1189)
T KOG1265|consen  702 AATLSVTVISGQFLSDRK---VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVYE  778 (1189)
T ss_pred             EeeEEEEEEeeeeccccc---cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeeec
Confidence            467899999999997654   44899999832       3477877766 899999964 6776 2223 2389999999


Q ss_pred             cCCCCCCCeeEEEEEeCcccccceeee
Q 031185           74 KDRFKADDKMGKAYLNLQPIISAARLR  100 (164)
Q Consensus        74 ~~~~~~d~~lG~~~i~l~~l~~~~~~~  100 (164)
                      .+    ..+||+-.++++.+..+..+-
T Consensus       779 Eg----gK~ig~RIlpvd~l~~GYrhv  801 (1189)
T KOG1265|consen  779 EG----GKFIGQRILPVDGLNAGYRHV  801 (1189)
T ss_pred             cC----CceeeeeccchhcccCcceeE
Confidence            85    469999999999887776543

>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []

Probab=97.07  E-value=0.042  Score=36.72  Aligned_cols=89  Identities=25%  Similarity=0.258  Sum_probs=60.1

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCcEEEEEECCEE---EEeeeeeC-CCCCeEeceEEEEeeCC---------CceEEEEE
Q 031185            5 FGQLKVTVVQGKRLVIRDFKSSDPYVVLKLGNQM---AKTKVINS-CLNPVWNEEHSLSLTEP---------VGVLSLEV   71 (164)
Q Consensus         5 ~~~L~v~i~~a~~L~~~~~~~~dpyv~v~~~~~~---~~T~~~~~-t~~P~w~e~~~f~~~~~---------~~~L~v~v   71 (164)
                      .-.+.+.|++..+++.   .....|+.+..++..   ..|..... ...-.|++.|.+.+...         ...+.+.|
T Consensus         6 kf~~~l~i~~l~~~p~---~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v   82 (143)
T PF10358_consen    6 KFQFDLTIHELENLPS---SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSV   82 (143)
T ss_pred             eEEEEEEEEEeECcCC---CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEE
Confidence            4467889999998875   233455666665543   44544433 55678999998875421         11788889


Q ss_pred             EEcCCCCCCCeeEEEEEeCcccccc
Q 031185           72 FDKDRFKADDKMGKAYLNLQPIISA   96 (164)
Q Consensus        72 ~d~~~~~~d~~lG~~~i~l~~l~~~   96 (164)
                      +.....++...+|.+.++|.+....
T Consensus        83 ~~~~~~~~k~~lG~~~inLaey~~~  107 (143)
T PF10358_consen   83 FEVDGSGKKKVLGKVSINLAEYANE  107 (143)
T ss_pred             EEecCCCccceEEEEEEEHHHhhCc
Confidence            8875433336899999999988775

Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).

>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=97.04  E-value=0.017  Score=40.17  Aligned_cols=89  Identities=21%  Similarity=0.223  Sum_probs=61.8

Q ss_pred             ceEEEEEEEEeecCCCCC-CCCCCcEEEEEE--CCEE----EEeeeee----CCCCCeEeceEEEEeeCCC----ceEEE
Q 031185            5 FGQLKVTVVQGKRLVIRD-FKSSDPYVVLKL--GNQM----AKTKVIN----SCLNPVWNEEHSLSLTEPV----GVLSL   69 (164)
Q Consensus         5 ~~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~--~~~~----~~T~~~~----~t~~P~w~e~~~f~~~~~~----~~L~v   69 (164)
                      ...+.|+|.++.+++... ....+-|+.+.+  +++.    ..|+...    -...+.|||.+.|++.-..    ..|.+
T Consensus         7 ~~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~i   86 (171)
T cd04012           7 TDLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVL   86 (171)
T ss_pred             cccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEE
Confidence            456889999999987765 445778888766  5443    3443222    1335779999999875322    28999


Q ss_pred             EEEEcCCCC---------CCCeeEEEEEeCccc
Q 031185           70 EVFDKDRFK---------ADDKMGKAYLNLQPI   93 (164)
Q Consensus        70 ~v~d~~~~~---------~d~~lG~~~i~l~~l   93 (164)
                      .+|+.....         .+..||.+.++|-+.
T Consensus        87 tl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~  119 (171)
T cd04012          87 TLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDF  119 (171)
T ss_pred             EEEEEecCCccccccccccceEEEEEeEeeEcc
Confidence            999866543         356999999998874

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c

>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length

Probab=97.02  E-value=0.006  Score=46.86  Aligned_cols=99  Identities=15%  Similarity=0.226  Sum_probs=78.0

Q ss_pred             EEEEEEEeecCCCCCCCCCCcEEEEEECCEEEEeeeeeCCCCCeEeceEEEEeeCC--------CceEEEEEEEcC-CCC
Q 031185            8 LKVTVVQGKRLVIRDFKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEP--------VGVLSLEVFDKD-RFK   78 (164)
Q Consensus         8 L~v~i~~a~~L~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~--------~~~L~v~v~d~~-~~~   78 (164)
                      +.+.|++|++.+...  .....+..++++....|..+..+..|.|+..+.-++...        ...|++++|..+ ..+
T Consensus         2 ivl~i~egr~F~~~~--~~~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~~   79 (340)
T PF12416_consen    2 IVLSILEGRNFPQRP--RHPIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGSTG   79 (340)
T ss_pred             EEEEEecccCCCCCC--CccEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCCCC
Confidence            678899999997652  345678889999999999999999999999998877632        128999999988 455


Q ss_pred             CCCeeEEEEEeCccc---ccc--eeeeEEEEecCC
Q 031185           79 ADDKMGKAYLNLQPI---ISA--ARLRHLVHVSSG  108 (164)
Q Consensus        79 ~d~~lG~~~i~l~~l---~~~--~~~~~~~~l~~~  108 (164)
                      ..+.+|.+.++|...   ..+  .....|+.|-+-
T Consensus        80 ~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~  114 (340)
T PF12416_consen   80 KRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSS  114 (340)
T ss_pred             cceeccEEEEEccccccccccccccCCCeeEcccc
Confidence            778999999999988   444  445567776543

>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks)

Probab=96.81  E-value=0.056  Score=37.81  Aligned_cols=88  Identities=14%  Similarity=0.138  Sum_probs=55.7

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCcEEEEEE--CCEE---EEeeeeeCCCCCeEeceEEEEeeCCC----ceEEEEEEEcCC
Q 031185            6 GQLKVTVVQGKRLVIRDFKSSDPYVVLKL--GNQM---AKTKVINSCLNPVWNEEHSLSLTEPV----GVLSLEVFDKDR   76 (164)
Q Consensus         6 ~~L~v~i~~a~~L~~~~~~~~dpyv~v~~--~~~~---~~T~~~~~t~~P~w~e~~~f~~~~~~----~~L~v~v~d~~~   76 (164)
                      ..++|+|..+..+..........|+.+.+  ++..   .+|.....+.++.|||.+.|++.-.+    ..|.+.||+...
T Consensus        10 ~~friki~~~~~~~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~~   89 (178)
T cd08399          10 RKFRVKILGIDIPVLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGKA   89 (178)
T ss_pred             CCEEEEEEeecccCcCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEec
Confidence            45788888886432212233445666655  4432   35665555778999999999876432    289999998532


Q ss_pred             CC----------------CCCeeEEEEEeCccc
Q 031185           77 FK----------------ADDKMGKAYLNLQPI   93 (164)
Q Consensus        77 ~~----------------~d~~lG~~~i~l~~l   93 (164)
                      ..                .+..||-+.+.|-+.
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD~  122 (178)
T cd08399          90 PALSSKKSAESPSSESKGKHQLLYYVNLLLIDH  122 (178)
T ss_pred             CcccccccccccccccccccceEEEEEEEEEcC
Confidence            11                245778888887763

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir

>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species

Probab=96.79  E-value=0.093  Score=36.34  Aligned_cols=81  Identities=20%  Similarity=0.308  Sum_probs=55.8

Q ss_pred             EEEEEEEeecCCCCCCCCCCcEEEEEE----------CCE-EEEeeeeeCC-----CCCeEeceEEEEeeCCC--c--eE
Q 031185            8 LKVTVVQGKRLVIRDFKSSDPYVVLKL----------GNQ-MAKTKVINSC-----LNPVWNEEHSLSLTEPV--G--VL   67 (164)
Q Consensus         8 L~v~i~~a~~L~~~~~~~~dpyv~v~~----------~~~-~~~T~~~~~t-----~~P~w~e~~~f~~~~~~--~--~L   67 (164)
                      +.=.|..|.+.     ...+.||+..+          +.. ...|.+....     ..-.|+.-|.+.+....  .  .|
T Consensus         4 v~G~I~~a~~f-----~~~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gwP~L   78 (168)
T PF07162_consen    4 VIGEIESAEGF-----EEDNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGWPQL   78 (168)
T ss_pred             EEEEEEEEECC-----CCCCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCCCceE
Confidence            34567788875     34578998887          223 4566665432     34678877776655332  2  89


Q ss_pred             EEEEEEcCCCCCCCeeEEEEEeCccc
Q 031185           68 SLEVFDKDRFKADDKMGKAYLNLQPI   93 (164)
Q Consensus        68 ~v~v~d~~~~~~d~~lG~~~i~l~~l   93 (164)
                      .++||..|..+++...|-..+.|..-
T Consensus        79 ~l~V~~~D~~gr~~~~GYG~~~lP~~  104 (168)
T PF07162_consen   79 VLQVYSLDSWGRDRVEGYGFCHLPTQ  104 (168)
T ss_pred             EEEEEEEcccCCeEEeEEeEEEeCCC
Confidence            99999999999999998877776543

Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.

>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]

Probab=96.77  E-value=0.0027  Score=47.75  Aligned_cols=89  Identities=20%  Similarity=0.172  Sum_probs=65.7

Q ss_pred             CcceEEEEEEEEeecCCCCC---CCCCCcEEEEEECCEE-EEeeeeeCCCCCeEeceEEEEeeCCCceEEEEEEEcCCCC
Q 031185            3 QPFGQLKVTVVQGKRLVIRD---FKSSDPYVVLKLGNQM-AKTKVINSCLNPVWNEEHSLSLTEPVGVLSLEVFDKDRFK   78 (164)
Q Consensus         3 ~~~~~L~v~i~~a~~L~~~~---~~~~dpyv~v~~~~~~-~~T~~~~~t~~P~w~e~~~f~~~~~~~~L~v~v~d~~~~~   78 (164)
                      ...|.|.+++..+++|....   .-.-+-||++..+.+. .+|.+-.....-.|.|+|..++... ..+.+-||.|+.-.
T Consensus        48 s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~~-~vl~~lvySW~pq~  126 (442)
T KOG1452|consen   48 SSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVNI-EVLHYLVYSWPPQR  126 (442)
T ss_pred             cccceEEEEEecccccccChhccCceeeeeeeeeecccCccccccccCCCCccchhhceeecccc-eeeeEEEeecCchh
Confidence            35689999999999997654   3356889999887654 6777766677888999999988764 57888899988876


Q ss_pred             CCCeeEEEEEeCcc
Q 031185           79 ADDKMGKAYLNLQP   92 (164)
Q Consensus        79 ~d~~lG~~~i~l~~   92 (164)
                      ++.+.-..-+.+..
T Consensus       127 RHKLC~~g~l~~~~  140 (442)
T KOG1452|consen  127 RHKLCHLGLLEAFV  140 (442)
T ss_pred             hccccccchhhhhh
Confidence            67654333344333

>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins

Probab=96.62  E-value=0.045  Score=33.76  Aligned_cols=65  Identities=25%  Similarity=0.363  Sum_probs=49.7

Q ss_pred             CCCCcEEEEEECCEE-EEeeeeeCCCCCeEeceEEEEeeCCCceEEEEEEEcCCCCCCCeeEEEEEeCccc
Q 031185           24 KSSDPYVVLKLGNQM-AKTKVINSCLNPVWNEEHSLSLTEPVGVLSLEVFDKDRFKADDKMGKAYLNLQPI   93 (164)
Q Consensus        24 ~~~dpyv~v~~~~~~-~~T~~~~~t~~P~w~e~~~f~~~~~~~~L~v~v~d~~~~~~d~~lG~~~i~l~~l   93 (164)
                      |..+-.+.+.+++.. .+|.-. ...+..|++.|.+++... .+|.|.||-.|.   ..+.|...+.|.+.
T Consensus         7 ~~~eV~avLklDn~~VgqT~Wk-~~s~q~WDQ~Fti~LdRs-RELEI~VywrD~---RslCav~~lrLEd~   72 (98)
T cd08687           7 GCSEVSAVLKLDNTVVGQTQWK-PKSNQAWDQSFTLELERS-RELEIAVYWRDW---RSLCAVKFLKLEDE   72 (98)
T ss_pred             cccceEEEEEEcCeEEeecccc-ccccccccceeEEEeecc-cEEEEEEEEecc---hhhhhheeeEhhhh
Confidence            446778889998765 555544 345889999999999875 699999998875   35778888888874

PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct

>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2

Probab=96.22  E-value=0.084  Score=35.41  Aligned_cols=54  Identities=19%  Similarity=0.249  Sum_probs=40.1

Q ss_pred             EeeeeeCC-CCCeEeceEEEEeeCC----CceEEEEEEEcCCCCCC----CeeEEEEEeCccc
Q 031185           40 KTKVINSC-LNPVWNEEHSLSLTEP----VGVLSLEVFDKDRFKAD----DKMGKAYLNLQPI   93 (164)
Q Consensus        40 ~T~~~~~t-~~P~w~e~~~f~~~~~----~~~L~v~v~d~~~~~~d----~~lG~~~i~l~~l   93 (164)
                      .|....-+ ..+.|+|.+.|++.-.    ...|.+.||........    ..||.+.++|-+.
T Consensus        23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~   85 (142)
T PF00792_consen   23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDY   85 (142)
T ss_dssp             E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-T
T ss_pred             eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECC
Confidence            56666666 7999999999997532    23899999997765444    6999999999876

7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....

>KOG1327 consensus Copine [Signal transduction mechanisms]

Probab=95.92  E-value=0.024  Score=45.79  Aligned_cols=61  Identities=31%  Similarity=0.493  Sum_probs=48.6

Q ss_pred             EEeeeeeCCCCCeEeceEEEEeeCCC-ceEEEEEEEcCC----CCCCCeeEEEEEeCcccccceee
Q 031185           39 AKTKVINSCLNPVWNEEHSLSLTEPV-GVLSLEVFDKDR----FKADDKMGKAYLNLQPIISAARL   99 (164)
Q Consensus        39 ~~T~~~~~t~~P~w~e~~~f~~~~~~-~~L~v~v~d~~~----~~~d~~lG~~~i~l~~l~~~~~~   99 (164)
                      .+|.++.+..+|.|.+.|.+...... +.|.+++++-+.    +...+|+|++...+..+......
T Consensus        43 ~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~  108 (529)
T KOG1327|consen   43 GRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGL  108 (529)
T ss_pred             cceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhh
Confidence            58999999999999999988766543 488899998664    34578999999999988766443

>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain

Probab=95.63  E-value=0.45  Score=32.94  Aligned_cols=71  Identities=14%  Similarity=0.237  Sum_probs=54.3

Q ss_pred             CCCcEEEEEECCEE-EEeeeeeC--CCCCeEeceEEEEeeCCCceEEEEEEEcCCCCCCCeeEEEEEeCcccccc
Q 031185           25 SSDPYVVLKLGNQM-AKTKVINS--CLNPVWNEEHSLSLTEPVGVLSLEVFDKDRFKADDKMGKAYLNLQPIISA   96 (164)
Q Consensus        25 ~~dpyv~v~~~~~~-~~T~~~~~--t~~P~w~e~~~f~~~~~~~~L~v~v~d~~~~~~d~~lG~~~i~l~~l~~~   96 (164)
                      ...-|+++.++++. .+|+...-  ...-.+++.|.+.+..-...|.++||.... ..+.+|+.+.+++......
T Consensus        36 ~~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~Pesi~l~i~E~~~-~~~~~la~v~vpvP~~~~~  109 (168)
T PF15625_consen   36 KTRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRWPESIKLEIYEKSG-LSDRLLAEVFVPVPGSTVH  109 (168)
T ss_pred             heeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecCCCEEEEEEEEccC-ccceEEEEEEeeCCCCccc
Confidence            45678899887765 55555444  334567888999988776799999999988 4788999999998866554

>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins

Probab=95.38  E-value=0.54  Score=33.20  Aligned_cols=54  Identities=19%  Similarity=0.241  Sum_probs=40.6

Q ss_pred             EEEeeeeeCCCCCeEeceEEEEeeCCC---ceEEEEEEEcCCCC-C-CCeeEEEEEeCc
Q 031185           38 MAKTKVINSCLNPVWNEEHSLSLTEPV---GVLSLEVFDKDRFK-A-DDKMGKAYLNLQ   91 (164)
Q Consensus        38 ~~~T~~~~~t~~P~w~e~~~f~~~~~~---~~L~v~v~d~~~~~-~-d~~lG~~~i~l~   91 (164)
                      .++|.+...+.+|.|+|++.+.++...   ..|.+++++..... + ...+|-+.++|-
T Consensus        54 e~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~  112 (189)
T cd08695          54 EYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLM  112 (189)
T ss_pred             eEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeec
Confidence            478889999999999999999887542   37888887744321 1 257899988884

Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int

>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain

Probab=95.29  E-value=0.3  Score=30.68  Aligned_cols=68  Identities=19%  Similarity=0.282  Sum_probs=44.9

Q ss_pred             EEEEEEEeecCCCCCCC-CCCcEEEEEE--CCEE----EEeeeeeCCCCCeEeceEEEEeeCCC----ceEEEEEEEcC
Q 031185            8 LKVTVVQGKRLVIRDFK-SSDPYVVLKL--GNQM----AKTKVINSCLNPVWNEEHSLSLTEPV----GVLSLEVFDKD   75 (164)
Q Consensus         8 L~v~i~~a~~L~~~~~~-~~dpyv~v~~--~~~~----~~T~~~~~t~~P~w~e~~~f~~~~~~----~~L~v~v~d~~   75 (164)
                      +.+.+....+......+ ..+-|+.+.+  +++.    ..|....-...+.|||.+.|++.-..    ..|.+.+|+..
T Consensus        13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~   91 (100)
T smart00142       13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVK   91 (100)
T ss_pred             eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence            55667777776554422 2478888876  4443    35555555667999999999865332    28999999854

Outlier of C2 family.

>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins

Probab=94.66  E-value=0.53  Score=33.40  Aligned_cols=54  Identities=13%  Similarity=0.230  Sum_probs=40.6

Q ss_pred             EEEeeeeeCCCCCeEeceEEEEeeCCC---ceEEEEEEEcCCC----CCCCeeEEEEEeCc
Q 031185           38 MAKTKVINSCLNPVWNEEHSLSLTEPV---GVLSLEVFDKDRF----KADDKMGKAYLNLQ   91 (164)
Q Consensus        38 ~~~T~~~~~t~~P~w~e~~~f~~~~~~---~~L~v~v~d~~~~----~~d~~lG~~~i~l~   91 (164)
                      .++|.+.....+|.|+|++.+.++...   ..|.+++++....    .....+|.+.++|-
T Consensus        54 e~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~  114 (196)
T cd08694          54 EYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM  114 (196)
T ss_pred             eEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence            478888888999999999999887542   3888888875421    12357898888874

Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A

Probab=94.44  E-value=0.27  Score=34.49  Aligned_cols=89  Identities=19%  Similarity=0.188  Sum_probs=47.2

Q ss_pred             cceEEEEEEEEeecCCCCCCCCCCcEEEEEE---C-C-----------------EEEEeeeeeCCCCCeEeceEEEEeeC
Q 031185            4 PFGQLKVTVVQGKRLVIRDFKSSDPYVVLKL---G-N-----------------QMAKTKVINSCLNPVWNEEHSLSLTE   62 (164)
Q Consensus         4 ~~~~L~v~i~~a~~L~~~~~~~~dpyv~v~~---~-~-----------------~~~~T~~~~~t~~P~w~e~~~f~~~~   62 (164)
                      ..+.|.|+..++.-=........+-.|.+++   + .                 ..+.|.+...+.+|.|+|+|.+.++.
T Consensus         5 ~rN~LYv~~~s~~f~k~~k~~~rNi~v~v~lr~~d~~~~~~~~i~~~~~~~~~~~~~~S~v~yh~k~P~f~deiKi~LP~   84 (184)
T PF14429_consen    5 YRNDLYVYPKSGNFSKSKKSSARNIEVTVELRDSDGNIKPLPCIYSRSSGPSFVTSYYSSVYYHNKNPQFNDEIKIQLPP   84 (184)
T ss_dssp             --EEEEEEEEEEE-SSSSSSS---EEEEEEEEETTS--B--S-EE-TTS--S-BS-EE----TT-SS-EEEEEEEEEE-C
T ss_pred             eeeeEEEEeCEEEECCCCCCCcccEEEEEEEEeCCCCccccceEECCCCCCCcceEEEEEEEecCCCCCccEEEEEEcCc
Confidence            4567777777764311111223455565555   1 1                 12567777788899999999999886


Q ss_pred             CC---ceEEEEEEEcCCCCC---CCeeEEEEEeCcc
Q 031185           63 PV---GVLSLEVFDKDRFKA---DDKMGKAYLNLQP   92 (164)
Q Consensus        63 ~~---~~L~v~v~d~~~~~~---d~~lG~~~i~l~~   92 (164)
                      ..   ..|.+++++...-.+   ...+|.+.++|-+
T Consensus        85 ~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~  120 (184)
T PF14429_consen   85 DLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD  120 (184)
T ss_dssp             CCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred             hhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence            53   288899998654321   2699999999987

>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function

Probab=94.36  E-value=0.4  Score=30.66  Aligned_cols=67  Identities=18%  Similarity=0.305  Sum_probs=36.2

Q ss_pred             EEEEEEC-CEEEEeeeeeCCCCCeEeceEEEEeeCCC--------ceEEEEEEEcCCCCCCCeeEEEEEeCcccccce
Q 031185           29 YVVLKLG-NQMAKTKVINSCLNPVWNEEHSLSLTEPV--------GVLSLEVFDKDRFKADDKMGKAYLNLQPIISAA   97 (164)
Q Consensus        29 yv~v~~~-~~~~~T~~~~~t~~P~w~e~~~f~~~~~~--------~~L~v~v~d~~~~~~d~~lG~~~i~l~~l~~~~   97 (164)
                      ||.+.+- -+.+.|.++. +.+|.++.+..|.+....        ..+.++++..-.. ....+|.+++++..+.+..
T Consensus         2 Fct~dFydfEtq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g~-d~~tla~~~i~l~~ll~~~   77 (107)
T PF11618_consen    2 FCTYDFYDFETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALGS-DFETLAAGQISLRPLLESN   77 (107)
T ss_dssp             EEEE-STT---EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-SS--EEEEEEEEE--SHHHH--
T ss_pred             EEEEEeeceeeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeeccC-CeEEEEEEEeechhhhcCC
Confidence            5666664 3557777776 789999999999887653        2789999887633 4679999999999988654

It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.

>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins

Probab=92.26  E-value=2.8  Score=29.22  Aligned_cols=53  Identities=25%  Similarity=0.359  Sum_probs=38.6

Q ss_pred             EEeeeeeCCCCCeEeceEEEEeeCCC---ceEEEEEEEcCCC-----CCCCeeEEEEEeCcc
Q 031185           39 AKTKVINSCLNPVWNEEHSLSLTEPV---GVLSLEVFDKDRF-----KADDKMGKAYLNLQP   92 (164)
Q Consensus        39 ~~T~~~~~t~~P~w~e~~~f~~~~~~---~~L~v~v~d~~~~-----~~d~~lG~~~i~l~~   92 (164)
                      ++|-+..+ .+|.|++++.+.++...   ..|.+++++...-     .....+|-+.++|-+
T Consensus        55 ~~sv~~~~-k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~  115 (178)
T cd08679          55 YTSVVYYH-KNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD  115 (178)
T ss_pred             EEEEEEcC-CCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence            34444444 89999999999986543   3888999986532     235689999999875

Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo

>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins

Probab=90.42  E-value=2.2  Score=29.93  Aligned_cols=55  Identities=20%  Similarity=0.239  Sum_probs=40.8

Q ss_pred             EEEeeeeeCCCCCeEeceEEEEeeCCC---ceEEEEEEEcCCCC------CCCeeEEEEEeCcc
Q 031185           38 MAKTKVINSCLNPVWNEEHSLSLTEPV---GVLSLEVFDKDRFK------ADDKMGKAYLNLQP   92 (164)
Q Consensus        38 ~~~T~~~~~t~~P~w~e~~~f~~~~~~---~~L~v~v~d~~~~~------~d~~lG~~~i~l~~   92 (164)
                      ...|.+...+.+|.|.|++.+.++...   ..|.+++++.+.-.      ....+|-+.++|-.
T Consensus        55 ~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~  118 (179)
T cd08696          55 EAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLR  118 (179)
T ss_pred             eEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeeec
Confidence            467888888999999999999887542   28888888744321      13579999888764

Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand

>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins

Probab=89.58  E-value=3.2  Score=29.27  Aligned_cols=55  Identities=20%  Similarity=0.269  Sum_probs=41.3

Q ss_pred             EEEeeeeeCCCCCeEeceEEEEeeCCC---ceEEEEEEEcCCC---------CCCCeeEEEEEeCcc
Q 031185           38 MAKTKVINSCLNPVWNEEHSLSLTEPV---GVLSLEVFDKDRF---------KADDKMGKAYLNLQP   92 (164)
Q Consensus        38 ~~~T~~~~~t~~P~w~e~~~f~~~~~~---~~L~v~v~d~~~~---------~~d~~lG~~~i~l~~   92 (164)
                      ...|.+...+.+|.|.|++.+.++...   ..|.+++++.+..         .....+|-+.++|-.
T Consensus        57 ~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~  123 (185)
T cd08697          57 SAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK  123 (185)
T ss_pred             EEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence            467888888999999999998877542   2888999886521         123578999988865

Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande

>PTZ00447 apical membrane antigen 1-like protein; Provisional

Probab=87.05  E-value=12  Score=29.21  Aligned_cols=80  Identities=11%  Similarity=0.155  Sum_probs=52.6

Q ss_pred             EEEEEEEeecCCCCCCCCCCcEEEEEECCEEEEeeeeeCCCCCeEe--ceEEEEeeCCCceEEEEEEEcCCCCCCCeeEE
Q 031185            8 LKVTVVQGKRLVIRDFKSSDPYVVLKLGNQMAKTKVINSCLNPVWN--EEHSLSLTEPVGVLSLEVFDKDRFKADDKMGK   85 (164)
Q Consensus         8 L~v~i~~a~~L~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~w~--e~~~f~~~~~~~~L~v~v~d~~~~~~d~~lG~   85 (164)
                      |.|.|.+-.++.    .....|+.+..+....+|..+.-+..-.-+  +.....+..-+.+|++.+|-.... +...||.
T Consensus        60 LLVeI~EI~~i~----k~khiyIef~~Gr~d~TT~~IpTsKK~RI~IqqRV~IkIRQcDnTLkI~lfKKkLv-kk~hIgd  134 (508)
T PTZ00447         60 LLVKINEIFNIN----KYKHIYIIFSTDKYDFTTDEIPTNKKNRIHIDQRVDIKIRQCDETLRVDLFTTKLT-KKVHIGQ  134 (508)
T ss_pred             EEEEehhhhccc----cceeEEEEEEcCceEEEccccccCcCceEEEeeeeeeeeeecCceEEEEEEecccc-ceeEEEE
Confidence            445555544442    244678888888888888655443332223  444444555556999999998877 6678999


Q ss_pred             EEEeCcc
Q 031185           86 AYLNLQP   92 (164)
Q Consensus        86 ~~i~l~~   92 (164)
                      +.+.++.
T Consensus       135 I~InIn~  141 (508)
T PTZ00447        135 IKIDINA  141 (508)
T ss_pred             EEecccH
Confidence            9998874

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	164
2ep6_A	133	Solution Structure Of The Second C2 Domain From Hum		2e-08
1wfj_A	136	C2 Domain-Containing Protein From Putative Elicitor		3e-08
2nsq_A	155	Crystal Structure Of The C2 Domain Of The Human E3		3e-08
3gpe_A	137	Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain		1e-07
1dsy_A	139	C2 Domain From Protein Kinase C (Alpha) Complexed W		1e-07
3b7y_A	153	Crystal Structure Of The C2 Domain Of The E3 Ubiqui		2e-07
3m7f_B	176	Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX		4e-07
2uzp_A	144	Crystal Structure Of The C2 Domain Of Human Protein		5e-07
4dnl_A	140	Crystal Structure Of A C2 Domain Of A Protein Kinas		8e-07
3jzy_A	510	Crystal Structure Of Human Intersectin 2 C2 Domain		1e-06
3kwt_A	148	Munc13-1 C2b-Domain, Calcium-Free Length = 148		5e-06
3pfq_A	674	Crystal Structure And Allosteric Activation Of Prot		3e-05
1rh8_A	142	Three-Dimensional Structure Of The Calcium-Free Pic		7e-05
1a25_A	149	C2 Domain From Protein Kinase C (Beta) Length = 149		9e-05
2r83_A	284	Crystal Structure Analysis Of Human Synaptotagmin 1		2e-04
1rsy_A	152	Structure Of The First C2-domain Of Synaptotagmin I		5e-04
3f00_A	143	Crystal Structure Of Synaptotagmin I C2a Domain Wit		5e-04
3f04_A	143	Crystal Structure Of Synaptotagmin I C2a Domain Len		5e-04
1byn_A	128	Solution Structure Of The Calcium-Bound First C2-Do		5e-04
1dqv_A	296	Crystal Structure Of Synaptotagmin Iii C2aC2B Lengt		6e-04
3hn8_A	296	Crystal Structure Of Synaptotagmin Length = 296		6e-04
2d8k_A	141	Solution Structure Of The First C2 Domain Of Synapt		6e-04

>pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human Mctp2 Protein Length = 133

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Query: 6   GQLKVTVVQGKRLVIRDFKS-SDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEPV 64
           G L+V V++   L+  DF   SDP+ +L+LGN   +T  +   LNP WN+  +  + +  
Sbjct: 13  GILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIH 72
Query: 65  GVLSLEVFDKDRFKADDKMGKAYLNLQPI 93
            VL + VFD+D  K  D +GK  + L  I
Sbjct: 73  DVLEVTVFDEDGDKPPDFLGKVAIPLLSI 101

>pdb|1WFJ|A Chain A, C2 Domain-Containing Protein From Putative Elicitor- Responsive Gene Length = 136

Iteration: 1
 Score = 54.3 bits (129), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
Query: 4   PFGQLKVTVVQGKRLVIRDF-KSSDPYVVLKLGNQMAKTKVINSC-LNPVWNEEHSLSLT 61
           P G L+V +V  K L   DF  + DPYV L    Q  K+ V       P WNE    +++
Sbjct: 8   PHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVS 67
Query: 62  EPVGVLSLEVFDKDRFKADDKMGKAYLNLQPII 94
           E    L  ++FDKD    DD +G+A + L+P+ 
Sbjct: 68  EGTTELKAKIFDKDVGTEDDAVGEATIPLEPVF 100

>pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3 Ubiquitin-Protein Ligase Nedd4-Like Protein Length = 155

Iteration: 1
 Score = 54.3 bits (129), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 35/86 (40%), Positives = 46/86 (53%), Gaps = 8/86 (9%)
Query: 8   LKVTVVQGKRLVIRD-FKSSDPYVVLKL-----GNQMA--KTKVINSCLNPVWNEEHSLS 59
           L+V VV G  L  +D F +SDPYV L L       ++A  +TK I   LNP WNEE    
Sbjct: 23  LRVKVVSGIDLAKKDIFGASDPYVKLSLYVADENRELALVQTKTIKKTLNPKWNEEFYFR 82
Query: 60  LTEPVGVLSLEVFDKDRFKADDKMGK 85
           +      L  EVFD++R   DD +G+
Sbjct: 83  VNPSNHRLLFEVFDENRLTRDDFLGQ 108

>pdb|3GPE|A Chain A, Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain Complexed With Ca2+ And Ptdins(4,5)p2 Length = 137

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/113 (35%), Positives = 55/113 (48%), Gaps = 10/113 (8%)
Query: 7   QLKVTVVQGKRLVIRDFKS-SDPYVVLKL-----GNQMAKTKVINSCLNPVWNEEHSLSL 60
           +L VTV   K L+  D    SDPYV LKL          KTK I S LNP WNE  +  L
Sbjct: 17  KLHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKL 76
Query: 61  --TEPVGVLSLEVFDKDRFKADDKMGKAYLNLQPIIS--AARLRHLVHVSSGE 109
             ++    LS+E++D DR   +D MG     +  ++   A+    L++   GE
Sbjct: 77  KPSDKDRRLSVEIWDWDRTTRNDFMGSLSFGVSELMKMPASGWYKLLNQEEGE 129

>pdb|1DSY|A Chain A, C2 Domain From Protein Kinase C (Alpha) Complexed With Ca2+ And Phosphatidylserine Length = 139

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/113 (35%), Positives = 55/113 (48%), Gaps = 10/113 (8%)
Query: 7   QLKVTVVQGKRLVIRDFKS-SDPYVVLKL-----GNQMAKTKVINSCLNPVWNEEHSLSL 60
           +L VTV   K L+  D    SDPYV LKL          KTK I S LNP WNE  +  L
Sbjct: 18  KLHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKL 77
Query: 61  --TEPVGVLSLEVFDKDRFKADDKMGKAYLNLQPIIS--AARLRHLVHVSSGE 109
             ++    LS+E++D DR   +D MG     +  ++   A+    L++   GE
Sbjct: 78  KPSDKDRRLSVEIWDWDRTTRNDFMGSLSFGVSELMKMPASGWYKLLNQEEGE 130

>pdb|3B7Y|A Chain A, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin- Protein Ligase Nedd4 Length = 153

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 48/93 (51%), Gaps = 7/93 (7%)
Query: 8   LKVTVVQGKRLVIRD-FKSSDPYVVLKLGNQM------AKTKVINSCLNPVWNEEHSLSL 60
           ++V V+ G  L  +D   +SDPYV + L + M       +TK I   LNP WNEE    +
Sbjct: 22  VRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRV 81
Query: 61  TEPVGVLSLEVFDKDRFKADDKMGKAYLNLQPI 93
                 L  EVFD++R   DD +G+  + L P+
Sbjct: 82  HPQQHRLLFEVFDENRLTRDDFLGQVDVPLYPL 114

>pdb|3M7F|B Chain B, Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX Length = 176

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 49/93 (52%), Gaps = 7/93 (7%)
Query: 8   LKVTVVQGKRLVIRD-FKSSDPYVVLKLGNQMA------KTKVINSCLNPVWNEEHSLSL 60
           ++V V+ G  L  +D   +SDPYV + L + M+      +TK I   LNP WNEE    +
Sbjct: 10  VRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRV 69
Query: 61  TEPVGVLSLEVFDKDRFKADDKMGKAYLNLQPI 93
                 +  EVFD++R   DD +G+  + L P+
Sbjct: 70  LPQRHRILFEVFDENRLTRDDFLGQVDVPLYPL 102

>pdb|2UZP|A Chain A, Crystal Structure Of The C2 Domain Of Human Protein Kinase C Gamma. Length = 144

Iteration: 1
 Score = 50.1 bits (118), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 52/99 (52%), Gaps = 10/99 (10%)
Query: 7   QLKVTVVQGKRLVIRDFKS-SDPYVVLKL-----GNQMAKTKVINSCLNPVWNEEHSLSL 60
           ++ VTV + + L+  D    SDPYV LKL          KT+ + + LNPVWNE    +L
Sbjct: 21  EIHVTVGEARNLIPMDPNGLSDPYVKLKLIPDPRNLTKQKTRTVKATLNPVWNETFVFNL 80
Query: 61  TEPVGV---LSLEVFDKDRFKADDKMGKAYLNLQPIISA 96
            +P  V   LS+EV+D DR   +D MG     +  ++ A
Sbjct: 81  -KPGDVERRLSVEVWDWDRTSRNDFMGAMSFGVSELLKA 118

>pdb|4DNL|A Chain A, Crystal Structure Of A C2 Domain Of A Protein Kinase C Alpha (Prkca) From Homo Sapiens At 1.90 A Resolution Length = 140

Iteration: 1
 Score = 49.7 bits (117), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 35/86 (40%), Positives = 44/86 (51%), Gaps = 8/86 (9%)
Query: 7   QLKVTVVQGKRLVIRDFKS-SDPYVVLKL-----GNQMAKTKVINSCLNPVWNEEHSLSL 60
           +L VTV   K L+  D    SDPYV LKL          KTK I S LNP WNE  +  L
Sbjct: 19  KLHVTVRDAKNLIPXDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKL 78
Query: 61  --TEPVGVLSLEVFDKDRFKADDKMG 84
             ++    LS+E++D DR   +D  G
Sbjct: 79  KPSDKDRRLSVEIWDWDRTTRNDFXG 104

>pdb|3JZY|A Chain A, Crystal Structure Of Human Intersectin 2 C2 Domain Length = 510

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 6   GQLKVTVVQGKRL-VIRDFKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEPV 64
           G+L V V++   L   +    S+PY  + +G+Q   T+ I   LNP WN      + +  
Sbjct: 387 GRLMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFIKDLY 446
Query: 65  -GVLSLEVFDKDRFKADDKMGKA 86
             VL L +FD+D+F  DD +G+ 
Sbjct: 447 QDVLCLTLFDRDQFSPDDFLGRT 469

>pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free Length = 148

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 12/100 (12%)
Query: 6   GQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEPV 64
            ++ +TVV  + L  +D   SSDPYV +++G    +TK I   LNPVW E          
Sbjct: 17  AKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSS 76
Query: 65  GVLSLEVFDKD---------RFK--ADDKMGKAYLNLQPI 93
             + + V D+D         RFK  +DD +G+  + ++ +
Sbjct: 77  DRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTL 116

>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein Kinase C Beta Ii Length = 674

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/98 (37%), Positives = 43/98 (43%), Gaps = 8/98 (8%)
Query: 8   LKVTVVQGKRLVIRDFKS-SDPYVVLKL-----GNQMAKTKVINSCLNPVWNEEHSLSLT 61
           L V V   K LV  D    SDPYV LKL          KTK I S LNP WNE     L 
Sbjct: 174 LIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLK 233
Query: 62  EPVG--VLSLEVFDKDRFKADDKMGKAYLNLQPIISAA 97
           E      LS+E++D D    +D MG     +  +  A 
Sbjct: 234 ESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAG 271

>pdb|1RH8|A Chain A, Three-Dimensional Structure Of The Calcium-Free Piccolo C2a- Domain Length = 142

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 54/105 (51%), Gaps = 19/105 (18%)
Query: 5   FGQLKVTVVQGKRLVIRDFKS-SDPYV----------VLKLGNQMA----KTKVINSCLN 49
            G L + ++Q + LV RD    SDP+V          V+ + N  A    +TK +   LN
Sbjct: 17  LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLN 76
Query: 50  PVWNEE---HSLSLTEPVG-VLSLEVFDKDRFKADDKMGKAYLNL 90
           P WN+     S+S+ + +   L + V+D DRF ++D +G+  ++L
Sbjct: 77  PEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDL 121

>pdb|1A25|A Chain A, C2 Domain From Protein Kinase C (Beta) Length = 149

Iteration: 1
 Score = 42.7 bits (99), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 42/98 (42%), Gaps = 8/98 (8%)
Query: 8   LKVTVVQGKRLVIRDFKS-SDPYVVLKL-----GNQMAKTKVINSCLNPVWNEEHSLSLT 61
           L V V   K LV  D    SDPYV LKL          KTK I   LNP WNE     L 
Sbjct: 33  LIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLK 92
Query: 62  EPVG--VLSLEVFDKDRFKADDKMGKAYLNLQPIISAA 97
           E      LS+E++D D    +D MG     +  +  A 
Sbjct: 93  ESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAG 130

>pdb|2R83|A Chain A, Crystal Structure Analysis Of Human Synaptotagmin 1 C2a-c2b Length = 284

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 47/86 (54%), Gaps = 7/86 (8%)
Query: 7   QLKVTVVQGKRLVIRDFK-SSDPYV-VLKLGNQMAK--TKVINSCLNPVWNEEHSLSL-- 60
           QL V ++Q   L   D   +SDPYV V  L ++  K  TKV    LNPV+NE+ +  +  
Sbjct: 20  QLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPY 79
Query: 61  TEPVG-VLSLEVFDKDRFKADDKMGK 85
           +E  G  L + V+D DRF   D +G+
Sbjct: 80  SELAGKTLVMAVYDFDRFSKHDIIGE 105

>pdb|1RSY|A Chain A, Structure Of The First C2-domain Of Synaptotagmin I: A Novel Ca2+(slash)phospholipid Binding Fold Length = 152

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 47/86 (54%), Gaps = 7/86 (8%)
Query: 7   QLKVTVVQGKRLVIRDFK-SSDPYV-VLKLGNQMAK--TKVINSCLNPVWNEEHSLSL-- 60
           QL V ++Q   L   D   +SDPYV V  L ++  K  TKV    LNPV+NE+ +  +  
Sbjct: 43  QLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPY 102
Query: 61  TEPVG-VLSLEVFDKDRFKADDKMGK 85
           +E  G  L + V+D DRF   D +G+
Sbjct: 103 SELGGKTLVMAVYDFDRFSKHDIIGE 128

>pdb|3F00|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With Cu(Ii) Length = 143

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 47/86 (54%), Gaps = 7/86 (8%)
Query: 7   QLKVTVVQGKRLVIRDFK-SSDPYV-VLKLGNQMAK--TKVINSCLNPVWNEEHSLSL-- 60
           QL V ++Q   L   D   +SDPYV V  L ++  K  TKV    LNPV+NE+ +  +  
Sbjct: 35  QLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPY 94
Query: 61  TEPVG-VLSLEVFDKDRFKADDKMGK 85
           +E  G  L + V+D DRF   D +G+
Sbjct: 95  SELGGKTLVMAVYDFDRFSKHDIIGE 120

>pdb|3F04|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain Length = 143

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 47/86 (54%), Gaps = 7/86 (8%)
Query: 7   QLKVTVVQGKRLVIRDFK-SSDPYV-VLKLGNQMAK--TKVINSCLNPVWNEEHSLSL-- 60
           QL V ++Q   L   D   +SDPYV V  L ++  K  TKV    LNPV+NE+ +  +  
Sbjct: 35  QLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPY 94
Query: 61  TEPVG-VLSLEVFDKDRFKADDKMGK 85
           +E  G  L + V+D DRF   D +G+
Sbjct: 95  SELGGKTLVMAVYDFDRFSKHDIIGE 120

>pdb|1BYN|A Chain A, Solution Structure Of The Calcium-Bound First C2-Domain Of Synaptotagmin I Length = 128

Iteration: 1
 Score = 40.0 bits (92), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 47/86 (54%), Gaps = 7/86 (8%)
Query: 7   QLKVTVVQGKRLVIRDFK-SSDPYV-VLKLGNQMAK--TKVINSCLNPVWNEEHSLSL-- 60
           QL V ++Q   L   D   +SDPYV V  L ++  K  TKV    LNPV+NE+ +  +  
Sbjct: 18  QLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPY 77
Query: 61  TEPVG-VLSLEVFDKDRFKADDKMGK 85
           +E  G  L + V+D DRF   D +G+
Sbjct: 78  SELGGKTLVMAVYDFDRFSKHDIIGE 103

>pdb|1DQV|A Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B Length = 296

Iteration: 1
 Score = 40.0 bits (92), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 50/100 (50%), Gaps = 13/100 (13%)
Query: 1   MRQPFG--QLKVTVVQGKRLVIRDFKS-SDPYVVLKL---GNQMAKTKVINSCLNPVWNE 54
           +R  +G  QL V ++Q   L  +D    SDPYV + L     +  +TKV    LNP++NE
Sbjct: 13  LRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNE 72
Query: 55  EHSLSLTEPVGVLS-----LEVFDKDRFKADDKMGKAYLN 89
               S+  P+  L+       V+D DRF   D +G+  L+
Sbjct: 73  TFQFSV--PLAELAQRKLHFSVYDFDRFSRHDLIGQVVLD 110

>pdb|3HN8|A Chain A, Crystal Structure Of Synaptotagmin Length = 296

Iteration: 1
 Score = 40.0 bits (92), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 50/100 (50%), Gaps = 13/100 (13%)
Query: 1   MRQPFG--QLKVTVVQGKRLVIRDFKS-SDPYVVLKL---GNQMAKTKVINSCLNPVWNE 54
           +R  +G  QL V ++Q   L  +D    SDPYV + L     +  +TKV    LNP++NE
Sbjct: 14  LRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNE 73
Query: 55  EHSLSLTEPVGVLS-----LEVFDKDRFKADDKMGKAYLN 89
               S+  P+  L+       V+D DRF   D +G+  L+
Sbjct: 74  TFQFSV--PLAELAQRKLHFSVYDFDRFSRHDLIGQVVLD 111

>pdb|2D8K|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin Vii Length = 141

Iteration: 1
 Score = 40.0 bits (92), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 47/94 (50%), Gaps = 8/94 (8%)
Query: 8   LKVTVVQGKRLVIRDFK-SSDPYVVLKL---GNQMAKTKVINSCLNPVWNEEHSLS--LT 61
           L V +++ + L  +DF  +SDP+V + L        +TKV    LNP WNE         
Sbjct: 28  LTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPY 87
Query: 62  EPV--GVLSLEVFDKDRFKADDKMGKAYLNLQPI 93
           E V   +L L+V D DRF  +D +G+  + L  +
Sbjct: 88  EKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKV 121

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	164
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	1e-35
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	7e-34
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	2e-32
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	4e-32
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	1e-30
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	2e-29
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	2e-28
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	1e-26
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	6e-26
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	7e-24
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	1e-23
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	1e-22
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	2e-22
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	6e-21
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	3e-20
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	1e-19
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	2e-19
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	6e-19
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	1e-18
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	1e-18
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	5e-14
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	1e-18
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	1e-18
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	3e-14
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	8e-18
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	2e-17
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	1e-16
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	1e-16
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	2e-16
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	7e-16
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	8e-16
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	3e-15
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	4e-15
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	4e-15
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	2e-14
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	5e-14
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	6e-14
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	1e-13
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	1e-13
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	1e-13
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	3e-13
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	2e-10
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	1e-07
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	6e-06
1djx_A	624	PLC-D1, phosphoinositide-specific phospholipase C,	2e-04

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133

 Score =  119 bits (301), Expect = 1e-35
 Identities = 34/116 (29%), Positives = 54/116 (46%), Gaps = 7/116 (6%)

Query: 1   MRQPFGQLKVTVVQGKRLVIRDFK-SSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLS 59
             +  G L+V V++   L+  DF   SDP+ +L+LGN   +T  +   LNP WN+  +  
Sbjct: 8   DVKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFP 67

Query: 60  LTEPVGVLSLEVFDKDRFKADDKMGKAYLNLQPIISAA------RLRHLVHVSSGE 109
           + +   VL + VFD+D  K  D +GK  + L  I          + + L     G 
Sbjct: 68  IKDIHDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQPNCYVLKNKDLEQAFKGV 123

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136

 Score =  115 bits (289), Expect = 7e-34
 Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 2/98 (2%)

Query: 4   PFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGNQMAKTKVINSC-LNPVWNEEHSLSLT 61
           P G L+V +V  K L   D   + DPYV L    Q  K+ V       P WNE    +++
Sbjct: 8   PHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVS 67

Query: 62  EPVGVLSLEVFDKDRFKADDKMGKAYLNLQPIISAARL 99
           E    L  ++FDKD    DD +G+A + L+P+     +
Sbjct: 68  EGTTELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSI 105

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140

 Score =  111 bits (280), Expect = 2e-32
 Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 4/95 (4%)

Query: 6   GQLKVTVVQGKRLVIRDFKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEPVG 65
           G L+V V     +    F   DP V +   ++  KTK +++ LNPVWNE     L     
Sbjct: 7   GMLRVIVESASNIPKTKFGKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIPL 66

Query: 66  ----VLSLEVFDKDRFKADDKMGKAYLNLQPIISA 96
                L + V D +    +  +G A + L+ +   
Sbjct: 67  DFSSSLGIIVKDFETIGQNKLIGTATVALKDLTGD 101

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173

 Score =  111 bits (280), Expect = 4e-32
 Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 2/94 (2%)

Query: 6   GQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEPV 64
            QL++TV+  K    +  +    PYV + +  Q  KT+  N+  +P W +  ++ +T PV
Sbjct: 36  SQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVT-PV 94

Query: 65  GVLSLEVFDKDRFKADDKMGKAYLNLQPIISAAR 98
             L   V+     K+D  +G A L++   + +  
Sbjct: 95  SKLHFRVWSHQTLKSDVLLGTAALDIYETLKSNN 128

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153

 Score =  107 bits (269), Expect = 1e-30
 Identities = 33/98 (33%), Positives = 49/98 (50%), Gaps = 7/98 (7%)

Query: 3   QPFGQLKVTVVQGKRLVIRDFK-SSDPYVVLKLGNQMA------KTKVINSCLNPVWNEE 55
           +    ++V V+ G  L  +D   +SDPYV + L + M       +TK I   LNP WNEE
Sbjct: 17  ENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEE 76

Query: 56  HSLSLTEPVGVLSLEVFDKDRFKADDKMGKAYLNLQPI 93
               +      L  EVFD++R   DD +G+  + L P+
Sbjct: 77  ILFRVHPQQHRLLFEVFDENRLTRDDFLGQVDVPLYPL 114

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176

 Score =  104 bits (262), Expect = 2e-29
 Identities = 32/99 (32%), Positives = 49/99 (49%), Gaps = 7/99 (7%)

Query: 3   QPFGQLKVTVVQGKRLVIRDFK-SSDPYVVLKLGNQMA------KTKVINSCLNPVWNEE 55
                ++V V+ G  L  +D   +SDPYV + L + M+      +TK I   LNP WNEE
Sbjct: 5   DDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEE 64

Query: 56  HSLSLTEPVGVLSLEVFDKDRFKADDKMGKAYLNLQPII 94
               +      +  EVFD++R   DD +G+  + L P+ 
Sbjct: 65  ILFRVLPQRHRILFEVFDENRLTRDDFLGQVDVPLYPLP 103

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148

 Score =  102 bits (255), Expect = 2e-28
 Identities = 27/105 (25%), Positives = 49/105 (46%), Gaps = 12/105 (11%)

Query: 1   MRQPFGQLKVTVVQGKRLVIRDFK-SSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLS 59
             +   ++ +TVV  + L  +D   SSDPYV +++G    +TK I   LNPVW E     
Sbjct: 12  TSKWSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFE 71

Query: 60  LTEPVGVLSLEVFDKD-----------RFKADDKMGKAYLNLQPI 93
                  + + V D+D           + ++DD +G+  + ++ +
Sbjct: 72  CHNSSDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTL 116

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126

 Score = 96.3 bits (240), Expect = 1e-26
 Identities = 26/164 (15%), Positives = 53/164 (32%), Gaps = 48/164 (29%)

Query: 6   GQLKVTVVQGKRLVIRDFK----SSDPYVVLKLG---NQMAKTKVINSCLNPVWNEEHSL 58
            +  V V++  ++    F     + DPYV L +    +   +T+  N+ +NPVWNE    
Sbjct: 3   HKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEF 62

Query: 59  SLTEPVG-VLSLEVFDKDRFKADDKMGKAYLNLQPIISAARLRHLVHVSSGETPLRKIIP 117
            L      VL + + D +    D+ +G A   +                           
Sbjct: 63  ILDPNQENVLEITLMDANYVM-DETLGTATFTVSS------------------------- 96

Query: 118 DSENCLARESSIICINGEVVQNVWLRLCEVESGEIELKVKIVDA 161
                         +     + V     +V    +E+ +++  +
Sbjct: 97  --------------MKVGEKKEVPFIFNQVTEMVLEMSLEVASS 126

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136

 Score = 94.9 bits (236), Expect = 6e-26
 Identities = 18/110 (16%), Positives = 37/110 (33%), Gaps = 14/110 (12%)

Query: 1   MRQPFGQLKVTVVQGKRLVIRDF------------KSSDPYVVLKLGNQ-MAKTKVINSC 47
           M    G LK+ + +   L    +               DPY+ L + +  + +T      
Sbjct: 1   MVVFNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKT 60

Query: 48  LNPVWNEEHSLSLTEPVGVLSLEVFDKDRFKADDKMGKAYLNLQPIISAA 97
            +P W++E    +      + L VF       DD +    +  + ++   
Sbjct: 61  NSPAWHDEFVTDVCNG-RKIELAVFHDAPIGYDDFVANCTIQFEELLQNG 109

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157

 Score = 90.4 bits (224), Expect = 7e-24
 Identities = 21/105 (20%), Positives = 38/105 (36%), Gaps = 13/105 (12%)

Query: 6   GQLKVTVVQGKRLVIRDFK-----------SSDPYVVLKLGNQ-MAKTKVINSCLNPVWN 53
           G L+V + +   L    +              DPY+ + +    + +T        P +N
Sbjct: 29  GYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYN 88

Query: 54  EEHSLSLTEPVGVLSLEVFDKDRFKADDKMGKAYLNLQPIISAAR 98
           EE   ++T+  G L L VF +     D  +    L  Q ++    
Sbjct: 89  EEFCANVTDG-GHLELAVFHETPLGYDHFVANCTLQFQELLRTTG 132

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540

 Score = 95.4 bits (236), Expect = 1e-23
 Identities = 20/94 (21%), Positives = 39/94 (41%), Gaps = 2/94 (2%)

Query: 1   MRQPFGQLKVTVVQGKRLVIRDFKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSL 60
            ++    L V+  + + L      ++D Y+ +  G Q  +T V+ +  NP W ++     
Sbjct: 389 RQRGLAHLVVSNFRAEHLWGDYTTATDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFEN 448

Query: 61  --TEPVGVLSLEVFDKDRFKADDKMGKAYLNLQP 92
                 G L ++V+D D    DD +G    +   
Sbjct: 449 VLLSTGGPLRVQVWDADYGWDDDLLGSCDRSPHS 482

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749

 Score = 92.3 bits (228), Expect = 1e-22
 Identities = 27/141 (19%), Positives = 55/141 (39%), Gaps = 9/141 (6%)

Query: 3   QPFGQLKVTVVQGKRLVIRDFK----SSDPYVVLKLG---NQMAKTKVINSCLNPVWNEE 55
           Q   +  V V++  ++    F     + DPYV L +    +   +T+  N+ +NPVWNE 
Sbjct: 15  QYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNET 74

Query: 56  HSLSLTEPVG-VLSLEVFDKDRFKADDKMGKAYLNLQPIISAARLRHLVHVSSGETPLRK 114
               L      VL + + D +    D+ +G A   +  +    +       +     + +
Sbjct: 75  FEFILDPNQENVLEITLMDANYVM-DETLGTATFTVSSMKVGEKKEVPFIFNQVTEMVLE 133

Query: 115 IIPDSENCLARESSIICINGE 135
           +  +  +C     S+   + E
Sbjct: 134 MSLEVCSCPDLRFSMALCDQE 154

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132

 Score = 85.5 bits (212), Expect = 2e-22
 Identities = 18/84 (21%), Positives = 41/84 (48%), Gaps = 4/84 (4%)

Query: 4  PFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKL--GNQMAKTKVINSCLNPVWNEEHSLSL 60
           F ++++TV+  K L  +D F+  DP+  + +    Q   T  + + L+P WN+ + L +
Sbjct: 3  EFIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYV 62

Query: 61 TEPVGVLSLEVFDKDRFKADDKMG 84
           +    +++ V++  +       G
Sbjct: 63 GKTD-SITISVWNHKKIHKKQGAG 85

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149

 Score = 82.4 bits (204), Expect = 6e-21
 Identities = 34/94 (36%), Positives = 41/94 (43%), Gaps = 8/94 (8%)

Query: 6   GQLKVTVVQGKRLVIRDFK-SSDPYVVLKL-----GNQMAKTKVINSCLNPVWNE--EHS 57
             L V V   K LV  D    SDPYV LKL          KTK I   LNP WNE     
Sbjct: 31  EVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQ 90

Query: 58  LSLTEPVGVLSLEVFDKDRFKADDKMGKAYLNLQ 91
           L  ++    LS+E++D D    +D MG     + 
Sbjct: 91  LKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGIS 124

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141

 Score = 79.3 bits (196), Expect = 1e-19
 Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 8/93 (8%)

Query: 6   GQLKVTVVQGKRLVIRDFK-SSDPYVVLKL---GNQMAKTKVINSCLNPVWNEE---HSL 58
             L V +++ + L  +DF  +SDP+V + L        +TKV    LNP WNE       
Sbjct: 26  STLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGF 85

Query: 59  SLTEPVG-VLSLEVFDKDRFKADDKMGKAYLNL 90
              + V  +L L+V D DRF  +D +G+  + L
Sbjct: 86  PYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPL 118

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142

 Score = 78.6 bits (194), Expect = 2e-19
 Identities = 30/116 (25%), Positives = 51/116 (43%), Gaps = 19/116 (16%)

Query: 5   FGQLKVTVVQGKRLVIRDFK-SSDPYVVLKL--------------GNQMAKTKVINSCLN 49
            G L + ++Q + LV RD    SDP+V + L                   +TK +   LN
Sbjct: 17  LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLN 76

Query: 50  PVWNEE---HSLSLTEPVG-VLSLEVFDKDRFKADDKMGKAYLNLQPIISAARLRH 101
           P WN+     S+S+ + +   L + V+D DRF ++D +G+  ++L           
Sbjct: 77  PEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPR 132

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143

 Score = 77.4 bits (191), Expect = 6e-19
 Identities = 31/103 (30%), Positives = 47/103 (45%), Gaps = 7/103 (6%)

Query: 6   GQLKVTVVQGKRLVIRDFK-SSDPYVVLKL---GNQMAKTKVINSCLNPVWNE--EHSLS 59
            QL V ++Q   L   D   +SDPYV + L     +  +TKV    LNPV+NE     + 
Sbjct: 34  NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVP 93

Query: 60  LTEPVG-VLSLEVFDKDRFKADDKMGKAYLNLQPIISAARLRH 101
            +E  G  L + V+D DRF   D +G+  + +  +        
Sbjct: 94  YSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEE 136

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142

 Score = 76.6 bits (189), Expect = 1e-18
 Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 10/95 (10%)

Query: 6   GQLKVTVVQGKRLVIRDFK-SSDPYVVLKL-----GNQMAKTKVINSCLNPVWNEE---H 56
             L+ T+++ K L   D    +DPYV L L      +   +TK + +  NPVWNE    H
Sbjct: 29  SNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYH 88

Query: 57  SLSLTEPVG-VLSLEVFDKDRFKADDKMGKAYLNL 90
            ++  +     L + V D+D+F  ++ +G+   +L
Sbjct: 89  GITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSL 123

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284

 Score = 79.5 bits (196), Expect = 1e-18
 Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 7/92 (7%)

Query: 6   GQLKVTVVQGKRLVIRDFK-SSDPYVVLKL---GNQMAKTKVINSCLNPVWNEEHSLSLT 61
            QL V ++Q   L   D   +SDPYV + L     +  +TKV    LNPV+NE+ +  + 
Sbjct: 19  NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVP 78

Query: 62  E---PVGVLSLEVFDKDRFKADDKMGKAYLNL 90
                   L + V+D DRF   D +G+  + +
Sbjct: 79  YSELAGKTLVMAVYDFDRFSKHDIIGEFKVPM 110

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284

 Score = 66.8 bits (163), Expect = 5e-14
 Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 11/105 (10%)

Query: 6   GQLKVTVVQGKRLVIRDFK-SSDPYVVLKLGNQMA-----KTKVINSCLNPVWNEEHSLS 59
           G+L V +++ K L   D    SDPYV + L          KT +  + LNP +NE  S  
Sbjct: 150 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 209

Query: 60  LTEPV---GVLSLEVFDKDRFKADDKMGKAYLNLQPIISAARLRH 101
           +         + + V D D+   +D +GK ++      + A LRH
Sbjct: 210 VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNS--TGAELRH 252

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152

 Score = 76.7 bits (189), Expect = 1e-18
 Identities = 31/103 (30%), Positives = 47/103 (45%), Gaps = 7/103 (6%)

Query: 6   GQLKVTVVQGKRLVIRDFK-SSDPYVVLKL---GNQMAKTKVINSCLNPVWNE--EHSLS 59
            QL V ++Q   L   D   +SDPYV + L     +  +TKV    LNPV+NE     + 
Sbjct: 42  NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVP 101

Query: 60  LTEPVG-VLSLEVFDKDRFKADDKMGKAYLNLQPIISAARLRH 101
            +E  G  L + V+D DRF   D +G+  + +  +        
Sbjct: 102 YSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEE 144

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296

 Score = 79.1 bits (195), Expect = 1e-18
 Identities = 30/90 (33%), Positives = 42/90 (46%), Gaps = 7/90 (7%)

Query: 6   GQLKVTVVQGKRLVIRDFK-SSDPYVVLKL---GNQMAKTKVINSCLNPVWNEEHSLSLT 61
            QL V ++Q   L  +D    SDPYV + L     +  +TKV    LNP++NE    S+ 
Sbjct: 20  DQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVP 79

Query: 62  E---PVGVLSLEVFDKDRFKADDKMGKAYL 88
                   L   V+D DRF   D +G+  L
Sbjct: 80  LAELAQRKLHFSVYDFDRFSRHDLIGQVVL 109

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296

 Score = 67.2 bits (164), Expect = 3e-14
 Identities = 26/102 (25%), Positives = 41/102 (40%), Gaps = 9/102 (8%)

Query: 6   GQLKVTVVQGKRLVIRDFK-SSDPYVVLKLGNQMA-----KTKVINSCLNPVWNEEHSLS 59
           G L VT+++   L   D    SDPYV   L ++       KT +  + LNP +NE     
Sbjct: 152 GLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFD 211

Query: 60  LTEPV---GVLSLEVFDKDRFKADDKMGKAYLNLQPIISAAR 98
           +         LS+ V D D    ++ +G   +  +      R
Sbjct: 212 VAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHGR 253

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score = 74.3 bits (183), Expect = 8e-18
 Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 9/94 (9%)

Query: 6   GQLKVTVVQGKRLVIRDFKS--SDPYVVLKLGNQMA---KTKVINSCLNPVWNEE---HS 57
               V + + + L   D +S  SDPY+ + +  +     KT+V+   L+P ++E    + 
Sbjct: 22  KAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYG 81

Query: 58  LSLTEPVG-VLSLEVFDKDRFKADDKMGKAYLNL 90
           +  T+     L   +   DRF  DD +G+  + L
Sbjct: 82  IPYTQIQELALHFTILSFDRFSRDDIIGEVLIPL 115

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134

 Score = 73.1 bits (180), Expect = 2e-17
 Identities = 25/94 (26%), Positives = 37/94 (39%), Gaps = 9/94 (9%)

Query: 6   GQLKVTVVQGKRLVIRDFKSSDPYVVLKL---GNQMAK--TKVINSCLNPVWNEE---HS 57
           G L + V+  K LV  D    +PYV   L    ++ +K  TK+     NP +NE      
Sbjct: 20  GTLFIMVMHIKDLVTEDGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSG 79

Query: 58  LSLTEPVG-VLSLEVFDKDRFKADDKMGKAYLNL 90
            S        L L V   +  + +  +G   L L
Sbjct: 80  YSKETLRQRELQLSVLSAESLRENFFLGGITLPL 113

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148

 Score = 71.2 bits (175), Expect = 1e-16
 Identities = 21/95 (22%), Positives = 40/95 (42%), Gaps = 10/95 (10%)

Query: 6   GQLKVTVVQGKRLVIRDFKS--SDPYVVLKL---GNQMAK--TKVINSCLNPVWNE--EH 56
             L V V +  +L   D     S+PYV   L    ++  K  T +    +NP+++E   +
Sbjct: 23  QSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRY 82

Query: 57  SLSLTEPVG-VLSLEVFDKDRFKADDKMGKAYLNL 90
            +  +      L   V+   RF  +  +G+A + +
Sbjct: 83  EIPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQM 117

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score = 70.8 bits (174), Expect = 1e-16
 Identities = 24/92 (26%), Positives = 35/92 (38%), Gaps = 9/92 (9%)

Query: 6   GQLKVTVVQGKRLVIRDFKSSDPYVVLKL----GNQMAKTKVINSCLNPVWNEEHSLSLT 61
            +L VT ++            D YV   +    G+  A+T +    L+  W E   L L 
Sbjct: 26  AELFVTRLEAVTSNHDG--GCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLA 83

Query: 62  E---PVGVLSLEVFDKDRFKADDKMGKAYLNL 90
           E   P   L+L +   DRF      G+  L L
Sbjct: 84  EEELPTATLTLTLRTCDRFSRHSVAGELRLGL 115

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142

 Score = 70.9 bits (174), Expect = 2e-16
 Identities = 30/106 (28%), Positives = 45/106 (42%), Gaps = 10/106 (9%)

Query: 6   GQLKVTVVQGKRLVIRDFKSSDPYVVLKL-----GNQMAKTKVINSCLNPVWNE--EHSL 58
            +L V V   + L+      SDPYV + L      +   KT V    LNPV+++  + S+
Sbjct: 24  NKLIVVVHACRNLIAFSEDGSDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSV 83

Query: 59  SLTEPVG-VLSLEVFDKDRFKADDK--MGKAYLNLQPIISAARLRH 101
           SL E     L + V +   F + DK  +GK  + L     A     
Sbjct: 84  SLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAKGWTQ 129

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153

 Score = 69.3 bits (170), Expect = 7e-16
 Identities = 17/101 (16%), Positives = 45/101 (44%), Gaps = 8/101 (7%)

Query: 6   GQLKVTVVQGKRLVIRDFKSSDPYVVLKL-----GNQMAKTKVINSCLNPVWNE--EHSL 58
             L + +++GK L+ +   + DPYV + L       +  KT+ +  C +P ++E     +
Sbjct: 27  RVLLLHIIEGKGLISKQPGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPV 86

Query: 59  SLTEPVGVLSLEVFDKDRF-KADDKMGKAYLNLQPIISAAR 98
              +    L + V+++    +    +G     ++ +++  +
Sbjct: 87  QEEDDQKRLLVTVWNRASQSRQSGLIGCMSFGVKSLLTPDK 127

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131

 Score = 68.9 bits (168), Expect = 8e-16
 Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 4/86 (4%)

Query: 8  LKVTVVQGKRLVIRDFKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEPVGVL 67
          L V V + K    ++    + YV LK+ N  + T  +     P W ++    +      L
Sbjct: 7  LCVGVKKAKFDGAQE--KFNTYVTLKVQNVKSTTIAVRGS-QPSWEQDFMFEINRLDLGL 63

Query: 68 SLEVFDKDRFKADDKMGKAYLNLQPI 93
          ++EV++K     D  +G  ++ L+ I
Sbjct: 64 TVEVWNKGLIW-DTMVGTVWIPLRTI 88

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141

 Score = 67.7 bits (166), Expect = 3e-15
 Identities = 22/98 (22%), Positives = 43/98 (43%), Gaps = 12/98 (12%)

Query: 6   GQLKVTVVQGKRLVIRDFK-SSDPYVVLKL-----GNQMAKTKVINSCLNPVWNEE---H 56
            QL VT++  K L  R+     +PYV +            +TK +   L P WN+     
Sbjct: 21  HQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYS 80

Query: 57  SLSLTEPVG-VLSLEVFDKDRFKADDK--MGKAYLNLQ 91
            +   E    +L + ++D+ R + ++   +G+  + L+
Sbjct: 81  PVHRREFRERMLEITLWDQARVREEESEFLGEILIELE 118

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129

 Score = 66.9 bits (164), Expect = 4e-15
 Identities = 22/98 (22%), Positives = 43/98 (43%), Gaps = 12/98 (12%)

Query: 6   GQLKVTVVQGKRLVIRDFK-SSDPYVVLKL-----GNQMAKTKVINSCLNPVWNEE---H 56
            QL VT++  K L  R+     +PYV +            +TK +   L P WN+     
Sbjct: 18  HQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYS 77

Query: 57  SLSLTEPVG-VLSLEVFDKDRFKADDK--MGKAYLNLQ 91
            +   E    +L + ++D+ R + ++   +G+  + L+
Sbjct: 78  PVHRREFRERMLEITLWDQARVREEESEFLGEILIELE 115

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155

 Score = 67.4 bits (165), Expect = 4e-15
 Identities = 16/95 (16%), Positives = 38/95 (40%), Gaps = 10/95 (10%)

Query: 6   GQLKVTVVQGKRLVIRDFK-SSDPYVVLKL------GNQMAKTKVINSCLNPVWNE--EH 56
            Q  + ++Q   L     +      + + +         + +T+ +++    V+NE    
Sbjct: 43  KQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWV 102

Query: 57  SLSLTEPVG-VLSLEVFDKDRFKADDKMGKAYLNL 90
           S+S        L ++V   DR   ++ +G A ++L
Sbjct: 103 SMSYPALHQKTLRVDVCTTDRSHLEECLGGAQISL 137

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138

 Score = 65.4 bits (160), Expect = 2e-14
 Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 9/95 (9%)

Query: 6   GQLKVTVVQGKRLVIRDFK-SSDPYVVLKL---GNQMA--KTKVINSCLNPVWNEEHSLS 59
             + V +++ + L   D   +SDPYV + L     ++   KT      LNP++NE  +  
Sbjct: 16  NSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFD 75

Query: 60  LTE---PVGVLSLEVFDKDRFKADDKMGKAYLNLQ 91
           +         + + V DKD+   +D +GK YL+ +
Sbjct: 76  IPTEKLRETTIIITVMDKDKLSRNDVIGKIYLSWK 110

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166

 Score = 65.1 bits (159), Expect = 5e-14
 Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 9/94 (9%)

Query: 6   GQLKVTVVQGKRLVIRDFK-SSDPYVVLKLGNQMA-----KTKVINSCLNPVWNE--EHS 57
           G L V +++   L   D    SDP+V L L   M      KT++    LNP +NE   + 
Sbjct: 37  GGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYD 96

Query: 58  LSLTEPVGV-LSLEVFDKDRFKADDKMGKAYLNL 90
           +  ++     L + V+D D  K++D +G   L +
Sbjct: 97  IKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGI 130

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147

 Score = 64.4 bits (157), Expect = 6e-14
 Identities = 24/99 (24%), Positives = 35/99 (35%), Gaps = 14/99 (14%)

Query: 6   GQLKVTVVQGKRLVIRDFK--------SSDPYVVLKL---GNQMAKTKVINSCLNPVWNE 54
             L V V++ + L               S+PYV + L        +T V      PV+ E
Sbjct: 26  NHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEE 85

Query: 55  --EHSLSLTEPVG-VLSLEVFDKDRFKADDKMGKAYLNL 90
                +   E     L L V D D+F     +GK  + L
Sbjct: 86  RYTFEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPL 124

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171

 Score = 64.0 bits (156), Expect = 1e-13
 Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 8/93 (8%)

Query: 6   GQLKVTVVQGKRLVIRDFK--SSDPYVVLKLGNQMA-----KTKVINSCLNPVWNEEHSL 58
           GQL+V V++ + L  +     +  PYV + L    A     KT++    L+P++ +    
Sbjct: 30  GQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVF 89

Query: 59  SLTEPVGVLSLEVF-DKDRFKADDKMGKAYLNL 90
             +    VL + V+ D  R      MG A + L
Sbjct: 90  DESPQGKVLQVIVWGDYGRMDHKCFMGVAQILL 122

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 Length = 167

 Score = 63.9 bits (155), Expect = 1e-13
 Identities = 20/92 (21%), Positives = 39/92 (42%), Gaps = 4/92 (4%)

Query: 5   FGQLKVTVVQGKRLVIRDFKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEPV 64
              L V V + K    ++    + YV LK+ N  + T  +     P W ++    +    
Sbjct: 13  LSLLCVGVKKAKFDGAQE--KFNTYVTLKVQNVESTTIAVRGS-QPSWEQDFMFEINRLD 69

Query: 65  GVLSLEVFDKDRFKADDKMGKAYLNLQPIISA 96
             L++EV++K     D  +G  ++ L+ I  +
Sbjct: 70  LGLTVEVWNKGLIW-DTMVGTVWIPLRTIRQS 100

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159

 Score = 63.6 bits (155), Expect = 1e-13
 Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 11/105 (10%)

Query: 6   GQLKVTVVQGKRLVIRDFK-SSDPYVVLKLGNQ-----MAKTKVINSCLNPVWNE--EHS 57
           G+L V +++ K L   D    SDPYV + L          KT +  + LNP +NE     
Sbjct: 25  GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 84

Query: 58  LSLTEPVGV-LSLEVFDKDRFKADDKMGKAYLNLQPIISAARLRH 101
           +   +   V + + V D D+   +D +GK ++      + A LRH
Sbjct: 85  VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNS--TGAELRH 127

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153

 Score = 62.8 bits (153), Expect = 3e-13
 Identities = 24/105 (22%), Positives = 40/105 (38%), Gaps = 11/105 (10%)

Query: 6   GQLKVTVVQGKRLVIRDFK-SSDPYVVLKL---GNQMA--KTKVINSCLNPVWNEEHSLS 59
             L V V++ + L   D    SDPYV + L     +++  KT V     N V+NE     
Sbjct: 30  NTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFD 89

Query: 60  LTE---PVGVLSLEVFDKDRFKADDKMGKAYLNLQPIISAARLRH 101
           +         +   V D +R   ++ +G+  L        +   H
Sbjct: 90  IPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATA--EGSGGGH 132

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} Length = 144

 Score = 55.0 bits (132), Expect = 2e-10
 Identities = 17/111 (15%), Positives = 44/111 (39%), Gaps = 11/111 (9%)

Query: 8   LKVTVVQGKRLVIRDFKSSDPYVVLKLGNQMAKTKVINSCLNPV-WNEEHSLSLTEPVG- 65
           L V +     L  R    +D    +    Q   ++V+ +C +   ++E     +   +  
Sbjct: 23  LIVHLKTVSELRGR----ADRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVASSIDR 78

Query: 66  --VLSLEVFDKDRFKADDKMGKAYLNLQPIISAARLR---HLVHVSSGETP 111
             VL +++F+  +  ++  +G   + LQ ++   R+     L+  ++    
Sbjct: 79  NEVLEIQIFNYSKVFSNKLIGTFRMVLQKVVEENRVEVSDTLIDDNNAIIK 129

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B Length = 510

 Score = 49.2 bits (117), Expect = 1e-07
 Identities = 33/119 (27%), Positives = 54/119 (45%), Gaps = 9/119 (7%)

Query: 4   PFGQLKVTVVQGKRLVIRDFKS-SDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTE 62
             G+L V V++   L        S+PY  + +G+Q   T+ I   LNP WN      + +
Sbjct: 385 GIGRLMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFIKD 444

Query: 63  -PVGVLSLEVFDKDRFKADDKMGKAYLNLQPIISAARLR-------HLVHVSSGETPLR 113
               VL L +FD+D+F  DD +G+  + +  I +    +        L  V +GE  +R
Sbjct: 445 LYQDVLCLTLFDRDQFSPDDFLGRTEIPVAKIRTEQESKGPMTRRLLLHEVPTGEVWVR 503

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} Length = 483

 Score = 44.2 bits (103), Expect = 6e-06
 Identities = 16/95 (16%), Positives = 31/95 (32%), Gaps = 12/95 (12%)

Query: 7   QLKVTVVQGKRLVIRDFKSSDPYVVLKL-GNQMAKTKV---INSCLNPVWNEEHSLSLTE 62
            LK+ +++ + L  +       Y  L L     A+T       S     W E    +   
Sbjct: 12  VLKLWIIEARELPPKK----RYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNLP 67

Query: 63  PVGVLSLEVF----DKDRFKADDKMGKAYLNLQPI 93
            V  L L ++     K +      +G   + +  +
Sbjct: 68  AVRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATL 102

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A Length = 624

 Score = 39.9 bits (92), Expect = 2e-04
 Identities = 24/107 (22%), Positives = 50/107 (46%), Gaps = 13/107 (12%)

Query: 7   QLKVTVVQGKRLVIRDFKSS---DPYVVLKLG-----NQMAKTKVI-NSCLNPVWNEEHS 57
           +L+V ++ G++L   +   +   DP V++++          +T VI N+  NP W+ E  
Sbjct: 498 RLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFE 557

Query: 58  LSLTEP-VGVLSLEVFDKDRFKADDKMGKAYL---NLQPIISAARLR 100
             +T P + ++   V D D    +D +G++ +   +L+       L 
Sbjct: 558 FEVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQGYRHVHLL 604

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	164
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	99.94
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	99.94
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	99.93
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	99.93
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	99.93
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	99.93
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	99.92
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	99.92
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	99.92
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	99.91
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	99.89
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	99.88
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	99.88
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	99.88
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	99.87
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	99.87
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	99.87
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	99.87
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	99.87
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	99.87
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	99.86
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	99.86
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	99.85
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	99.85
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	99.85
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	99.85
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	99.85
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	99.85
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	99.84
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	99.84
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	99.84
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	99.84
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	99.84
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	99.83
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	99.83
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	99.82
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	99.82
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	99.82
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	99.79
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	99.79
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	99.76
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	99.74
1djx_A	624	PLC-D1, phosphoinositide-specific phospholipase C,	99.74
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	99.66
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	99.64
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	99.59
3qr0_A	816	Phospholipase C-beta (PLC-beta); PH domain, EF han	99.47
3ohm_B	885	1-phosphatidylinositol-4,5-bisphosphate phosphodi	99.45
2zkm_X	799	1-phosphatidylinositol-4,5-bisphosphate phosphodie	99.42
1yrk_A	126	NPKC-delta, protein kinase C, delta type; C2 domai	99.41
2enj_A	138	NPKC-theta, protein kinase C theta type; beta-sand	99.35
2yrb_A	156	Protein fantom; beta sandwich, NPPSFA, national pr	96.36
2wxf_A	940	Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca	95.31
3l4c_A	220	Dedicator of cytokinesis protein 1; DOCK180, DOCK1	95.09
3hhm_A	1091	Phosphatidylinositol-4,5-bisphosphate 3-kinase cat	94.15
1e7u_A	961	Phosphatidylinositol 3-kinase catalytic subunit; p	93.44
2y3a_A	1092	Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca	86.42

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2

Probab=99.94  E-value=4.9e-26  Score=151.62  Aligned_cols=125  Identities=30%  Similarity=0.408  Sum_probs=106.7

Q ss_pred             CCcceEEEEEEEEeecCCCCC-CCCCCcEEEEEECCEEEEeeeee-CCCCCeEeceEEEEeeCCCceEEEEEEEcCCCCC
Q 031185            2 RQPFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGNQMAKTKVIN-SCLNPVWNEEHSLSLTEPVGVLSLEVFDKDRFKA   79 (164)
Q Consensus         2 ~~~~~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~~~~~~T~~~~-~t~~P~w~e~~~f~~~~~~~~L~v~v~d~~~~~~   79 (164)
                      ..+.|.|.|+|++|++|+..+ .+.+||||++++++..++|++++ ++.||.|+|+|.|.+......|.|+|||++.+++
T Consensus         6 ~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~l~~~V~d~~~~~~   85 (136)
T 1wfj_A            6 SGPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTTELKAKIFDKDVGTE   85 (136)
T ss_dssp             CCCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEESSCCEEEEEECCSSSCTT
T ss_pred             CCCcEEEEEEEEeccCCCCcccCCCcCceEEEEECCccceeEeccCCCCCCccCcEEEEEECCCCCEEEEEEEECCCCCC
Confidence            357899999999999999998 88999999999998899999998 8999999999999999866799999999999989


Q ss_pred             CCeeEEEEEeCcccccc-eeeeEEEEecCCceeeEEEeeCCCceeeccceEEEECCEEEeeeeEEEceeeeeeEEEEEEE
Q 031185           80 DDKMGKAYLNLQPIISA-ARLRHLVHVSSGETPLRKIIPDSENCLARESSIICINGEVVQNVWLRLCEVESGEIELKVKI  158 (164)
Q Consensus        80 d~~lG~~~i~l~~l~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~G~v~~~l~~  158 (164)
                      |++||++.++|.++... .....|+.|.                                     ..+...|+|+++++|
T Consensus        86 d~~lG~~~i~l~~l~~~~~~~~~w~~L~-------------------------------------~~~~~~G~i~l~l~~  128 (136)
T 1wfj_A           86 DDAVGEATIPLEPVFVEGSIPPTAYNVV-------------------------------------KDEEYKGEIWVALSF  128 (136)
T ss_dssp             TCCSEEEEEESHHHHHHSEEEEEEEEEE-------------------------------------ETTEEEEEEEEEEEE
T ss_pred             CceEEEEEEEHHHhccCCCCCcEEEEee-------------------------------------cCCccCEEEEEEEEE
Confidence            99999999999988443 2233343332                                     034568999999999


Q ss_pred             EeCCC
Q 031185          159 VDAPS  163 (164)
Q Consensus       159 ~~~~~  163 (164)
                      .|..+
T Consensus       129 ~p~~~  133 (136)
T 1wfj_A          129 KPSGP  133 (136)
T ss_dssp             EECCS
T ss_pred             EeCCC
Confidence            99865

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.94  E-value=7.7e-25  Score=146.46  Aligned_cols=126  Identities=21%  Similarity=0.290  Sum_probs=107.1

Q ss_pred             CcceEEEEEEEEeecCCCCCCCCCCcEEEEEECCEEEEeeeeeCCCCCeEeceEEEEeeCC----CceEEEEEEEcCCCC
Q 031185            3 QPFGQLKVTVVQGKRLVIRDFKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEP----VGVLSLEVFDKDRFK   78 (164)
Q Consensus         3 ~~~~~L~v~i~~a~~L~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~----~~~L~v~v~d~~~~~   78 (164)
                      ...|.|.|+|++|++|+..+.+.+||||+++++++.++|++++++.||.|||+|.|.+...    ...|.|+|||++.++
T Consensus         4 ~~~g~L~v~v~~a~~L~~~~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~~l~i~V~d~d~~~   83 (140)
T 2dmh_A            4 GSSGMLRVIVESASNIPKTKFGKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDFETIG   83 (140)
T ss_dssp             CBCCEEEEEEEEEESCCCCSSSCCCEEEEEECSSCEEECCCCCSCSSCEEEEEEEEECSSCCCCTTCEEEEEEEETTCSS
T ss_pred             CCCcEEEEEEEEeeCCCCCCCCCCCeEEEEEECCEeEEeeeecCCCCCccCcEEEEEecccccCCCCEEEEEEEECCCCC
Confidence            4678999999999999987777899999999999999999999999999999999998753    359999999999999


Q ss_pred             CCCeeEEEEEeCcccccceeeeEEEE---ecCCceeeEEEeeCCCceeeccceEEEECCEEEeeeeEEEceeeeeeEEEE
Q 031185           79 ADDKMGKAYLNLQPIISAARLRHLVH---VSSGETPLRKIIPDSENCLARESSIICINGEVVQNVWLRLCEVESGEIELK  155 (164)
Q Consensus        79 ~d~~lG~~~i~l~~l~~~~~~~~~~~---l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~G~v~~~  155 (164)
                      +|++||++.+++.++..+.....|+.   +...          .                         .....|+|+++
T Consensus        84 ~~~~lG~~~i~l~~l~~~~~~~~w~~l~~l~~~----------~-------------------------~~~~~G~l~l~  128 (140)
T 2dmh_A           84 QNKLIGTATVALKDLTGDQSRSLPYKLISLLNE----------K-------------------------GQDTGATIDLV  128 (140)
T ss_dssp             SCCCCEEEEEEGGGTCSSSCEEEEEEEEEEECT----------T-------------------------CCEEEEEEEEE
T ss_pred             CCceEEEEEEEHHHhccCCCceeEEeeeeccCC----------C-------------------------CCCCCCEEEEE
Confidence            99999999999999988776666655   3211          0                         12356999999


Q ss_pred             EEEEeCCC
Q 031185          156 VKIVDAPS  163 (164)
Q Consensus       156 l~~~~~~~  163 (164)
                      +.|.|.++
T Consensus       129 ~~~~p~~~  136 (140)
T 2dmh_A          129 IGYDPPSG  136 (140)
T ss_dssp             EEECCCBS
T ss_pred             EEEECCCC
Confidence            99998764

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}

Probab=99.93  E-value=2.6e-25  Score=151.18  Aligned_cols=94  Identities=22%  Similarity=0.332  Sum_probs=83.9

Q ss_pred             CCcceEEEEEEEEeecCCCCC-C----------CCCCcEEEEEECCEE-EEeeeeeCCCCCeEeceEEEEeeCCCceEEE
Q 031185            2 RQPFGQLKVTVVQGKRLVIRD-F----------KSSDPYVVLKLGNQM-AKTKVINSCLNPVWNEEHSLSLTEPVGVLSL   69 (164)
Q Consensus         2 ~~~~~~L~v~i~~a~~L~~~~-~----------~~~dpyv~v~~~~~~-~~T~~~~~t~~P~w~e~~~f~~~~~~~~L~v   69 (164)
                      ....|.|+|+|++|++|+..+ .          +.+||||++.+++.. .+|++++++.||.|||+|.|.+... ..|.+
T Consensus        25 ~~~~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~~~~~~kT~v~~ktlnP~WNE~F~f~v~~~-~~L~~  103 (157)
T 2fk9_A           25 MKFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYNEEFCANVTDG-GHLEL  103 (157)
T ss_dssp             CCEEEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEE-CEEEE
T ss_pred             ccCccEEEEEEEEEECCCCccccccccccccCCCCCCeEEEEEECCEeeEEeeecCCCCCCccCcEEEEEcCCC-CEEEE
Confidence            356799999999999999877 3          568999999998876 6999999999999999999998753 58999


Q ss_pred             EEEEcCCCCCCCeeEEEEEeCcccccc
Q 031185           70 EVFDKDRFKADDKMGKAYLNLQPIISA   96 (164)
Q Consensus        70 ~v~d~~~~~~d~~lG~~~i~l~~l~~~   96 (164)
                      +|||++.+++|++||++.|++.++..+
T Consensus       104 ~V~D~d~~~~dd~iG~~~i~l~~l~~~  130 (157)
T 2fk9_A          104 AVFHETPLGYDHFVANCTLQFQELLRT  130 (157)
T ss_dssp             EEEECCSSSSCEEEEEEEEEHHHHHHH
T ss_pred             EEEECCCCCCCCEEEEEEEEHHHhhcc
Confidence            999999999999999999999988754

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*

Probab=99.93  E-value=1.9e-24  Score=145.91  Aligned_cols=103  Identities=26%  Similarity=0.486  Sum_probs=91.0

Q ss_pred             CCcceEEEEEEEEeecCCCCC-CCCCCcEEEEEECCEEEEeeeeeCCCCCeEeceEEEEeeCCCceEEEEEEEcCCC---
Q 031185            2 RQPFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEPVGVLSLEVFDKDRF---   77 (164)
Q Consensus         2 ~~~~~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~L~v~v~d~~~~---   77 (164)
                      ....|.|.|+|++|++|+..+ .+.+||||++.+++..++|++++++.||.|+|+|.|.+......|.++|||++..   
T Consensus        13 ~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~d~d~~~~~   92 (148)
T 3kwu_A           13 SKWSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSSDRIKVRVLDEDDDIKS   92 (148)
T ss_dssp             --CCEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEEEECCCCCSCSSCEEEEEEEEEECSTTCEEEEEEEECCCSHHH
T ss_pred             cccccEEEEEEEeeeCCCCCCCCCCcCeEEEEEECCEEEECCccCCCCCCCcccEEEEEecCCCCEEEEEEEECCCCccc
Confidence            346799999999999999998 8899999999999999999999999999999999999988777999999999985   


Q ss_pred             --------CCCCeeEEEEEeCcccccceeeeEEEEec
Q 031185           78 --------KADDKMGKAYLNLQPIISAARLRHLVHVS  106 (164)
Q Consensus        78 --------~~d~~lG~~~i~l~~l~~~~~~~~~~~l~  106 (164)
                              ++|++||++.+++.++  ......|+.|.
T Consensus        93 ~~~~~~~~~~~~~lG~~~i~l~~l--~~~~~~w~~L~  127 (148)
T 3kwu_A           93 RVKQRFKRESDDFLGQTIIEVRTL--SGEMDVWYNLD  127 (148)
T ss_dssp             HHHTTTSSCSSEEEEEEEEEGGGC--CSEEEEEEECB
T ss_pred             cccccccCCCCccEEEEEEEHHHC--cCCCCEEEEcc
Confidence                    7899999999999988  33445566665

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=99.93  E-value=3.3e-25  Score=147.10  Aligned_cols=122  Identities=29%  Similarity=0.451  Sum_probs=105.1

Q ss_pred             CcceEEEEEEEEeecCCCCC-CCCCCcEEEEEECCEEEEeeeeeCCCCCeEeceEEEEeeCCCceEEEEEEEcCCCCCCC
Q 031185            3 QPFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEPVGVLSLEVFDKDRFKADD   81 (164)
Q Consensus         3 ~~~~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~L~v~v~d~~~~~~d~   81 (164)
                      .+.+.|.|+|++|++|+..+ .+.+||||++++++..++|++++++.||.|+|+|.|.+......|.++|||++.+++|+
T Consensus        10 ~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~i~V~d~d~~~~~~   89 (133)
T 2ep6_A           10 KDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHDVLEVTVFDEDGDKPPD   89 (133)
T ss_dssp             CCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEESCTTCEEEEEEEEEETTEEEE
T ss_pred             CCceEEEEEEEeeECCCCCCCCCCcCeEEEEEECCEEEEeeeecCCCCCccccEEEEEecCCCCEEEEEEEECCCCCCCC
Confidence            57899999999999999998 88999999999999999999999999999999999999877679999999999998899


Q ss_pred             eeEEEEEeCcccccceeeeEEEEecCCceeeEEEeeCCCceeeccceEEEECCEEEeeeeEEEceeeeeeEEEEEEEEe
Q 031185           82 KMGKAYLNLQPIISAARLRHLVHVSSGETPLRKIIPDSENCLARESSIICINGEVVQNVWLRLCEVESGEIELKVKIVD  160 (164)
Q Consensus        82 ~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~G~v~~~l~~~~  160 (164)
                      +||++.+++.++..+.  ..|+.|...                                  ...+...|+|+++++|++
T Consensus        90 ~lG~~~i~l~~l~~~~--~~w~~L~~~----------------------------------~~~~~~~G~i~l~i~~~~  132 (133)
T 2ep6_A           90 FLGKVAIPLLSIRDGQ--PNCYVLKNK----------------------------------DLEQAFKGVIYLEMDLIY  132 (133)
T ss_dssp             ECCBCEEEGGGCCSSC--CEECCCBCS----------------------------------CTTSCCSSEEEEEEEEEE
T ss_pred             eeEEEEEEHHHccCCC--ceEEEeecC----------------------------------CCCCccceEEEEEEEEEe
Confidence            9999999999986543  345555432                                  002346799999999975

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A

Probab=99.93  E-value=7.6e-25  Score=148.61  Aligned_cols=96  Identities=33%  Similarity=0.531  Sum_probs=81.7

Q ss_pred             CcceEEEEEEEEeecCCCCC-CCCCCcEEEEEECC------EEEEeeeeeCCCCCeEeceEEEEeeCCCceEEEEEEEcC
Q 031185            3 QPFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGN------QMAKTKVINSCLNPVWNEEHSLSLTEPVGVLSLEVFDKD   75 (164)
Q Consensus         3 ~~~~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~~------~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~L~v~v~d~~   75 (164)
                      ...+.|.|+|++|++|+..+ .+.+||||++++..      ..++|++++++.||.|||+|.|.+......|.|+|||++
T Consensus        17 ~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~l~~~V~d~d   96 (153)
T 3b7y_A           17 ENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHPQQHRLLFEVFDEN   96 (153)
T ss_dssp             TTCEEEEEEEEEEESCC-------CCEEEEEEEEETTTEEEEEEECCCCSSCSSCCCCEEEEEEECTTTCEEEEEEEECC
T ss_pred             CCccEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCccceeeeCccccCCCCCCCCCEEEEEecCCCCEEEEEEEECC
Confidence            46789999999999999988 88999999999953      578999999999999999999999877679999999999


Q ss_pred             CCCCCCeeEEEEEeCccccccee
Q 031185           76 RFKADDKMGKAYLNLQPIISAAR   98 (164)
Q Consensus        76 ~~~~d~~lG~~~i~l~~l~~~~~   98 (164)
                      .+++|++||++.+++.++..+..
T Consensus        97 ~~~~d~~iG~~~i~l~~l~~~~~  119 (153)
T 3b7y_A           97 RLTRDDFLGQVDVPLYPLPTENP  119 (153)
T ss_dssp             SSSCCEEEEEEEEECCSCCBCCT
T ss_pred             CCcCCCeeEEEEEEHHHcccCCC
Confidence            99899999999999998877643

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1

Probab=99.92  E-value=1.7e-24  Score=144.21  Aligned_cols=122  Identities=17%  Similarity=0.328  Sum_probs=102.0

Q ss_pred             CCCcceEEEEEEEEeecCCCCC-CCC-----------CCcEEEEEECCEE-EEeeeeeCCCCCeEeceEEEEeeCCCceE
Q 031185            1 MRQPFGQLKVTVVQGKRLVIRD-FKS-----------SDPYVVLKLGNQM-AKTKVINSCLNPVWNEEHSLSLTEPVGVL   67 (164)
Q Consensus         1 ~~~~~~~L~v~i~~a~~L~~~~-~~~-----------~dpyv~v~~~~~~-~~T~~~~~t~~P~w~e~~~f~~~~~~~~L   67 (164)
                      |....|.|.|+|++|++|+..+ .+.           +||||++.+++.. .+|++..++.||.|||+|.|.+... ..|
T Consensus         1 m~~~~g~L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~-~~L   79 (136)
T 1gmi_A            1 MVVFNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNG-RKI   79 (136)
T ss_dssp             CCCEEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEE-CEE
T ss_pred             CcccceEEEEEEEeCcCCCCcccccccccccccCCcCcCcEEEEEECCeEeeeeeEECCCcCCccCCEEEEEecCC-CEE
Confidence            5567899999999999999887 443           8999999998766 6899999999999999999998765 799


Q ss_pred             EEEEEEcCCCCCCCeeEEEEEeCcccccceeeeEEEEecCCceeeEEEeeCCCceeeccceEEEECCEEEeeeeEEEcee
Q 031185           68 SLEVFDKDRFKADDKMGKAYLNLQPIISAARLRHLVHVSSGETPLRKIIPDSENCLARESSIICINGEVVQNVWLRLCEV  147 (164)
Q Consensus        68 ~v~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  147 (164)
                      .++|||++.+++|++||++.+++.++......                                     ..+.|++|.  
T Consensus        80 ~~~V~d~d~~~~dd~iG~~~i~l~~l~~~~~~-------------------------------------~~~~w~~L~--  120 (136)
T 1gmi_A           80 ELAVFHDAPIGYDDFVANCTIQFEELLQNGSR-------------------------------------HFEDWIDLE--  120 (136)
T ss_dssp             EEEEEECCSSSSCEEEEEEEEEHHHHTSTTCS-------------------------------------EEEEEEECB--
T ss_pred             EEEEEeCCCCCCCCEEEEEEEEHHHhcccCCC-------------------------------------CccEEEEcC--
Confidence            99999999998999999999999988664211                                     124566665  


Q ss_pred             eeeeEEEEEEEEeCC
Q 031185          148 ESGEIELKVKIVDAP  162 (164)
Q Consensus       148 ~~G~v~~~l~~~~~~  162 (164)
                      +.|+|+++++|.+..
T Consensus       121 ~~G~i~l~l~~~~~~  135 (136)
T 1gmi_A          121 PEGKVYVIIDLSGSS  135 (136)
T ss_dssp             SSCEEEEEEEEEEEE
T ss_pred             CCeEEEEEEEEEecC
Confidence            379999999997643

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1

Probab=99.92  E-value=3.9e-24  Score=140.55  Aligned_cols=116  Identities=22%  Similarity=0.428  Sum_probs=98.1

Q ss_pred             ceEEEEEEEEeecCCCC---C-CCCCCcEEEEEECC---EEEEeeeeeCCCCCeEeceEEEEeeCC-CceEEEEEEEcCC
Q 031185            5 FGQLKVTVVQGKRLVIR---D-FKSSDPYVVLKLGN---QMAKTKVINSCLNPVWNEEHSLSLTEP-VGVLSLEVFDKDR   76 (164)
Q Consensus         5 ~~~L~v~i~~a~~L~~~---~-~~~~dpyv~v~~~~---~~~~T~~~~~t~~P~w~e~~~f~~~~~-~~~L~v~v~d~~~   76 (164)
                      .+.|.|+|++|++|+.+   + .+.+||||++++++   ..++|++++++.||.|||+|.|.+... ...|.++|||++.
T Consensus         2 ~~~L~v~v~~a~~L~~~~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~d~   81 (126)
T 1rlw_A            2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY   81 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCS
T ss_pred             CcEEEEEEEeeeCCCCCCccccCCCCCCEEEEEEccCCCceEEccccCCCCCCcccceEEEEecCCCCCEEEEEEEECCC
Confidence            58899999999999985   4 68999999999974   679999999999999999999999644 3589999999998


Q ss_pred             CCCCCeeEEEEEeCcccccceeeeEEEEecCCceeeEEEeeCCCceeeccceEEEECCEEEeeeeEEEceeeeeeEEEEE
Q 031185           77 FKADDKMGKAYLNLQPIISAARLRHLVHVSSGETPLRKIIPDSENCLARESSIICINGEVVQNVWLRLCEVESGEIELKV  156 (164)
Q Consensus        77 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~G~v~~~l  156 (164)
                      + +|++||++.++|.++..+....                                       .|++|....+|+|++++
T Consensus        82 ~-~~~~iG~~~i~l~~l~~~~~~~---------------------------------------~~~~L~~~~~g~i~~~l  121 (126)
T 1rlw_A           82 V-MDETLGTATFTVSSMKVGEKKE---------------------------------------VPFIFNQVTEMVLEMSL  121 (126)
T ss_dssp             S-CCEEEEEEEEEGGGSCTTCEEE---------------------------------------EEEEETTTEEEEEEEEE
T ss_pred             C-CCceeEEEEEEHHHccCCCcEE---------------------------------------EEEEcCCCceEEEEEEE
Confidence            8 5899999999999887665444                                       45566556789999998


Q ss_pred             EEEe
Q 031185          157 KIVD  160 (164)
Q Consensus       157 ~~~~  160 (164)
                      +..|
T Consensus       122 e~~~  125 (126)
T 1rlw_A          122 EVAS  125 (126)
T ss_dssp             ECCC
T ss_pred             EeCC
Confidence            8764

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}

Probab=99.92  E-value=7e-24  Score=147.07  Aligned_cols=96  Identities=32%  Similarity=0.524  Sum_probs=80.3

Q ss_pred             CcceEEEEEEEEeecCCCCC-CCCCCcEEEEEECC------EEEEeeeeeCCCCCeEeceEEEEeeCCCceEEEEEEEcC
Q 031185            3 QPFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGN------QMAKTKVINSCLNPVWNEEHSLSLTEPVGVLSLEVFDKD   75 (164)
Q Consensus         3 ~~~~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~~------~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~L~v~v~d~~   75 (164)
                      ...|.|.|+|++|++|+..+ .+.+||||++++..      ..++|++++++.||.|+|+|.|.+......|.|+|||++
T Consensus         5 ~~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~L~~~V~d~d   84 (176)
T 3m7f_B            5 DDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLPQRHRILFEVFDEN   84 (176)
T ss_dssp             TTCEEEEEEEEEEESCC---CCCCCCEEEEEEEEETTTEEEEEEECCCCSSCSSCEEEEEEEEEECTTTCEEEEEEEECC
T ss_pred             CCcEEEEEEEEEeeCCCCcCCCCCcCcEEEEEEECCCCCcccceeCceECCCCCCcccceEEEEEcCCCCEEEEEEEECC
Confidence            46799999999999999988 88999999999964      568999999999999999999999877679999999999


Q ss_pred             CCCCCCeeEEEEEeCccccccee
Q 031185           76 RFKADDKMGKAYLNLQPIISAAR   98 (164)
Q Consensus        76 ~~~~d~~lG~~~i~l~~l~~~~~   98 (164)
                      .+++|++||++.++|.++.....
T Consensus        85 ~~~~d~~lG~~~i~l~~l~~~~~  107 (176)
T 3m7f_B           85 RLTRDDFLGQVDVPLYPLPTENP  107 (176)
T ss_dssp             ----CEEEEEEEEESCSCCBC--
T ss_pred             CCCCCcEEEEEEEEHHHccccCC
Confidence            99899999999999999877643

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1

Probab=99.91  E-value=9.7e-23  Score=140.91  Aligned_cols=92  Identities=25%  Similarity=0.405  Sum_probs=82.6

Q ss_pred             cceEEEEEEEEeecCCCCC-CCCCCcEEEEEECCEEEEeeeeeCCCCCeEeceEEEEeeCCCceEEEEEEEcCCCCCCCe
Q 031185            4 PFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEPVGVLSLEVFDKDRFKADDK   82 (164)
Q Consensus         4 ~~~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~L~v~v~d~~~~~~d~~   82 (164)
                      ..+.|.|+|++|++|+..+ .+.+||||++++++..++|++++++.||.|||+|.|.+.. ...|.|+|||++.+++|++
T Consensus        34 ~~~~L~V~V~~A~~L~~~~~~~~sDPYv~v~~~~~~~kT~v~~~tlnP~Wne~f~f~v~~-~~~L~~~V~D~d~~~~dd~  112 (173)
T 2nq3_A           34 MKSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTP-VSKLHFRVWSHQTLKSDVL  112 (173)
T ss_dssp             CCEEEEEEEEEEEECCCC--CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEECT-TCEEEEEEEECCSSSCCEE
T ss_pred             CceEEEEEEEEeECCCCcccCCCCCeEEEEEECCEEeEccccCCCCCCeECCEEEEEeCC-CCEEEEEEEECCCCCCCce
Confidence            5688999999999999444 5569999999999999999999999999999999999864 5699999999999999999


Q ss_pred             eEEEEEeCcccccc
Q 031185           83 MGKAYLNLQPIISA   96 (164)
Q Consensus        83 lG~~~i~l~~l~~~   96 (164)
                      ||++.+++.++...
T Consensus       113 lG~~~i~l~~l~~~  126 (173)
T 2nq3_A          113 LGTAALDIYETLKS  126 (173)
T ss_dssp             EEEEEEEHHHHHHH
T ss_pred             EEEEEEEHHHhccc
Confidence            99999999988764

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A

Probab=99.89  E-value=6.4e-22  Score=131.02  Aligned_cols=102  Identities=20%  Similarity=0.389  Sum_probs=85.6

Q ss_pred             cceEEEEEEEEeecCCCCC-CCCCCcEEEEEECC--EEEEeeeeeCCCCCeEeceEEEEeeCCCceEEEEEEEcCCCCC-
Q 031185            4 PFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGN--QMAKTKVINSCLNPVWNEEHSLSLTEPVGVLSLEVFDKDRFKA-   79 (164)
Q Consensus         4 ~~~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~~--~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~L~v~v~d~~~~~~-   79 (164)
                      ....|.|+|++|++|+..+ .+.+||||+++++.  ..++|++++++.||.|+|+|.|.+... ..|.++|||++.+++ 
T Consensus         3 ~~~~L~V~v~~a~~L~~~d~~g~sDpyv~v~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~-~~l~~~v~d~d~~~~~   81 (132)
T 3pyc_A            3 EFIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVGKT-DSITISVWNHKKIHKK   81 (132)
T ss_dssp             SEEEEEEEEEEEESCCCCSTTCCCCEEEEEEETTTCCEEECCCCSSCSSCEEEEEEEEEEETT-CCEEEEEEEGGGTTSS
T ss_pred             CeEEEEEEEEEeECCCCCCCCCCcCeEEEEEECCCCceEECCccCCCCCCCccCEEEEEeCCC-CEEEEEEEECCCCCCC
Confidence            4568999999999999999 88999999999964  789999999999999999999999876 469999999999866 


Q ss_pred             --CCeeEEEEEeCcccccc-eeeeEEEEec
Q 031185           80 --DDKMGKAYLNLQPIISA-ARLRHLVHVS  106 (164)
Q Consensus        80 --d~~lG~~~i~l~~l~~~-~~~~~~~~l~  106 (164)
                        |++||++.+++.++... .....++.|.
T Consensus        82 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~  111 (132)
T 3pyc_A           82 QGAGFLGCVRLLSNAISRLKDTGYQRLDLC  111 (132)
T ss_dssp             TTTTEEEEEEECHHHHHHHTTSCCEEEECB
T ss_pred             CCCCceEEEEEeHHHhhcccccCcEEEeee
Confidence              89999999999887332 2223444443

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}

Probab=99.88  E-value=5.8e-22  Score=131.67  Aligned_cols=104  Identities=23%  Similarity=0.277  Sum_probs=90.0

Q ss_pred             cceEEEEEEEEeecCCCCC-CCCCCcEEEEEE-----CCEEEEeeeeeCCCCCeEeceEEEE-eeCC---CceEEEEEEE
Q 031185            4 PFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKL-----GNQMAKTKVINSCLNPVWNEEHSLS-LTEP---VGVLSLEVFD   73 (164)
Q Consensus         4 ~~~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~-----~~~~~~T~~~~~t~~P~w~e~~~f~-~~~~---~~~L~v~v~d   73 (164)
                      ..+.|.|+|++|++|+. + .+.+||||++++     ....++|++++++.||.|||+|.|. +...   ...|.|+|||
T Consensus        18 ~~~~L~V~V~~a~~L~~-~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~~v~~~~l~~~~L~~~V~d   96 (134)
T 2b3r_A           18 RNGTLFIMVMHIKDLVT-EDGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKETLRQRELQLSVLS   96 (134)
T ss_dssp             ETTEEEEEEEEEECCCC-TTSCCCCEEEEEEEESCSSSCCCEECCCCCSCSSCEEEEEEEEESCCHHHHTTCEEEEEEEE
T ss_pred             cCCEEEEEEEEeeCCCC-CCCCCCCeEEEEEEEcCCCCCceecCCcCcCCCCCCCccEEEECCcCHHHhCcCEEEEEEEE
Confidence            45789999999999997 6 889999999999     3457899999999999999999999 6532   3599999999


Q ss_pred             cCCCCCCCeeEEEEEeCcccccceeeeEEEEecCC
Q 031185           74 KDRFKADDKMGKAYLNLQPIISAARLRHLVHVSSG  108 (164)
Q Consensus        74 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~  108 (164)
                      ++.++++++||++.++|.++..+.....|++|...
T Consensus        97 ~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~~~  131 (134)
T 2b3r_A           97 AESLRENFFLGGITLPLKDFNLSKETVKWYQLTAA  131 (134)
T ss_dssp             CCSSSCCEEEEEEEEEGGGSCTTSCEEEEEECBC-
T ss_pred             CCCCCCCcEEEEEEEEhhhccCCCCcceeEECCCc
Confidence            99998999999999999999887777777777643

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*

Probab=99.88  E-value=2.9e-22  Score=134.35  Aligned_cols=104  Identities=29%  Similarity=0.371  Sum_probs=93.0

Q ss_pred             cceEEEEEEEEeecCCCCC-CCCCCcEEEEEE---CCEEEEeeeeeCCCCCeEeceEEEEeeCC---CceEEEEEEEcCC
Q 031185            4 PFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKL---GNQMAKTKVINSCLNPVWNEEHSLSLTEP---VGVLSLEVFDKDR   76 (164)
Q Consensus         4 ~~~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~---~~~~~~T~~~~~t~~P~w~e~~~f~~~~~---~~~L~v~v~d~~~   76 (164)
                      ..+.|.|+|++|++|+..+ .+.+||||++++   +...++|++++++.||.|+|+|.|.+...   ...|.|+|||++.
T Consensus        32 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~  111 (143)
T 3f04_A           32 QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDR  111 (143)
T ss_dssp             TTTEEEEEEEEEECCCCBGGGBCCCEEEEEEEESCCSCCEECCCCCSCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCS
T ss_pred             CCCEEEEEEEEecCCCCCCCCCCcCcEEEEEEECCCCccEECccCcCCCCCcCcCeEEEeecHhhcCCCEEEEEEEeCCC
Confidence            5678999999999999988 889999999999   45679999999999999999999998643   2589999999999


Q ss_pred             CCCCCeeEEEEEeCcccccceeeeEEEEecC
Q 031185           77 FKADDKMGKAYLNLQPIISAARLRHLVHVSS  107 (164)
Q Consensus        77 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~  107 (164)
                      +++|++||++.++|.++..+.....|++|..
T Consensus       112 ~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~  142 (143)
T 3f04_A          112 FSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS  142 (143)
T ss_dssp             SSCCEEEEEEEEEGGGCCTTSCEEEEEECBC
T ss_pred             CCCCceEEEEEEEHHHccCCCCcceEEECcC
Confidence            9999999999999999988888888888763

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.88  E-value=6.4e-22  Score=134.09  Aligned_cols=104  Identities=29%  Similarity=0.371  Sum_probs=92.3

Q ss_pred             cceEEEEEEEEeecCCCCC-CCCCCcEEEEEE---CCEEEEeeeeeCCCCCeEeceEEEEeeCC---CceEEEEEEEcCC
Q 031185            4 PFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKL---GNQMAKTKVINSCLNPVWNEEHSLSLTEP---VGVLSLEVFDKDR   76 (164)
Q Consensus         4 ~~~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~---~~~~~~T~~~~~t~~P~w~e~~~f~~~~~---~~~L~v~v~d~~~   76 (164)
                      ..+.|.|+|++|++|+..+ .+.+||||++++   +...++|++++++.||.|||+|.|.+...   ...|.|+|||++.
T Consensus        40 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~  119 (152)
T 1rsy_A           40 QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDR  119 (152)
T ss_dssp             TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCS
T ss_pred             CCCEEEEEEEEeECCCCccCCCCcCeEEEEEEEcCCCceEeccccCCCCCCcCcccEEEeecHHHcCCCEEEEEEEECCC
Confidence            5678999999999999998 889999999999   34578999999999999999999988643   3589999999999


Q ss_pred             CCCCCeeEEEEEeCcccccceeeeEEEEecC
Q 031185           77 FKADDKMGKAYLNLQPIISAARLRHLVHVSS  107 (164)
Q Consensus        77 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~  107 (164)
                      +++|++||++.+++.++..+...+.|++|..
T Consensus       120 ~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~  150 (152)
T 1rsy_A          120 FSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS  150 (152)
T ss_dssp             SSCCEEEEEEEEEGGGCCCSSCEEEEEECBC
T ss_pred             CCCCcEEEEEEEEchhccCCCCcceEEECCC
Confidence            9899999999999999988777788887764

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A

Probab=99.87  E-value=1.3e-21  Score=131.09  Aligned_cols=104  Identities=28%  Similarity=0.437  Sum_probs=91.9

Q ss_pred             cceEEEEEEEEeecCCCCC-CCCCCcEEEEEECC-----EEEEeeeeeCCCCCeEeceEEEE-eeCCC---ceEEEEEEE
Q 031185            4 PFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGN-----QMAKTKVINSCLNPVWNEEHSLS-LTEPV---GVLSLEVFD   73 (164)
Q Consensus         4 ~~~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~~-----~~~~T~~~~~t~~P~w~e~~~f~-~~~~~---~~L~v~v~d   73 (164)
                      ..+.|.|+|++|++|+..+ .+.+||||++++.+     ..++|++++++.||.|||+|.|. +....   ..|.|+|||
T Consensus        27 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d  106 (142)
T 2chd_A           27 DNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCD  106 (142)
T ss_dssp             GGTEEEEEEEEEESCCCCCTTSCCCEEEEEEEESCCSGGGEEECCCCCSCSSCEEEEEEEEESCCHHHHHHCEEEEEEEE
T ss_pred             CCCEEEEEEEEecCCCCCCCCCCCCCEEEEEEEcCCCCcceeeCCcCCCCCCCcCcCEEEEcccCHHHccCCEEEEEEEE
Confidence            5678999999999999999 88999999999954     67999999999999999999998 54322   489999999


Q ss_pred             cCCCCCCCeeEEEEEeCcccccceeeeEEEEecC
Q 031185           74 KDRFKADDKMGKAYLNLQPIISAARLRHLVHVSS  107 (164)
Q Consensus        74 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~  107 (164)
                      ++.+++|++||++.+++.++..+.....|+.|..
T Consensus       107 ~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~  140 (142)
T 2chd_A          107 EDKFGHNEFIGETRFSLKKLKANQRKNFNICLER  140 (142)
T ss_dssp             ECTTSCEEEEEEEEEEGGGCCTTCCEEEEEECBC
T ss_pred             CCCCCCCcEEEEEEEEHHHcCCCCccEEEEeccc
Confidence            9999899999999999999998888888877764

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens}

Probab=99.87  E-value=6.5e-22  Score=134.50  Aligned_cols=103  Identities=17%  Similarity=0.204  Sum_probs=89.0

Q ss_pred             cceEEEEEEEEeecCCCCC-CCCCCcEEEEEECC------EEEEeeeeeCCCCCeEeceEEEEeeCC---CceEEEEEEE
Q 031185            4 PFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGN------QMAKTKVINSCLNPVWNEEHSLSLTEP---VGVLSLEVFD   73 (164)
Q Consensus         4 ~~~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~~------~~~~T~~~~~t~~P~w~e~~~f~~~~~---~~~L~v~v~d   73 (164)
                      ..+.|.|.|++|++|+.++ .+.+||||++++..      ..++|++++++.||.|||+|.|.+...   ...|.++|||
T Consensus        41 ~~~~L~V~Vi~a~~L~~~d~~g~sDPyVkv~l~~~~~~~~~~~kT~v~~~tlnP~wnE~F~f~v~~~~l~~~~L~~~V~d  120 (155)
T 2z0u_A           41 KNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVSMSYPALHQKTLRVDVCT  120 (155)
T ss_dssp             TTTEEEEEEEEEECGGGTCCSCCSEEEEEEEEESCSCHHHHEEECCCEECCSSEEEEEEEEEECCHHHHHHCEEEEEEEE
T ss_pred             CCCEEEEEEEEccCcCCcccCCCCCEEEEEEEecCCCCCccceeCCcCCCCCCCccccEEEEEcCHHHhCcCEEEEEEEE
Confidence            4678999999999999999 88999999999954      269999999999999999999998753   2489999999


Q ss_pred             cCCCCCCCeeEEEEEeCccccc-ceeeeEEEEec
Q 031185           74 KDRFKADDKMGKAYLNLQPIIS-AARLRHLVHVS  106 (164)
Q Consensus        74 ~~~~~~d~~lG~~~i~l~~l~~-~~~~~~~~~l~  106 (164)
                      ++.++++++||++.++|.++.. +.....|+.|.
T Consensus       121 ~d~~~~~d~iG~~~i~l~~l~~~~~~~~~W~~L~  154 (155)
T 2z0u_A          121 TDRSHLEECLGGAQISLAEVCRSGERSTRWYNLL  154 (155)
T ss_dssp             ECTTSCEEEEEEEEEECTTSCTTCCCEEEEEEEB
T ss_pred             CCCCCCCcEEEEEEEEHHHccCCCCccccceEcc
Confidence            9999999999999999999853 45556676653

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.87  E-value=2.5e-21  Score=129.56  Aligned_cols=105  Identities=27%  Similarity=0.374  Sum_probs=91.3

Q ss_pred             CcceEEEEEEEEeecCCCCC-CCCCCcEEEEEEC---CEEEEeeeeeCCCCCeEeceEEEEeeC----CCceEEEEEEEc
Q 031185            3 QPFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLG---NQMAKTKVINSCLNPVWNEEHSLSLTE----PVGVLSLEVFDK   74 (164)
Q Consensus         3 ~~~~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~---~~~~~T~~~~~t~~P~w~e~~~f~~~~----~~~~L~v~v~d~   74 (164)
                      ...+.|.|+|++|++|+..+ .+.+||||++++.   ...++|++++++.||.|||+|.|.+..    ....|.|+|||+
T Consensus        23 ~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~  102 (141)
T 2d8k_A           23 FQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDY  102 (141)
T ss_dssp             SSSCCEEEEEEEEESCCCCSSSSCCCEEEEEEEESCCSSEEECCCCTTCSSCCCCEEEEECSCCHHHHTTSEEEEEEEEC
T ss_pred             CCCCEEEEEEEEeECCCCCCCCCCCCcEEEEEEECCCCccEeCceEcCCCCCccccEEEECccCHHHcccCEEEEEEEEC
Confidence            35688999999999999998 8899999999993   457899999999999999999998532    235899999999


Q ss_pred             CCCCCCCeeEEEEEeCcccccceeeeEEEEecC
Q 031185           75 DRFKADDKMGKAYLNLQPIISAARLRHLVHVSS  107 (164)
Q Consensus        75 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~  107 (164)
                      +.++++++||++.+++.++..+.....|+.|..
T Consensus       103 d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~  135 (141)
T 2d8k_A          103 DRFSRNDPIGEVSIPLNKVDLTQMQTFWKDLKP  135 (141)
T ss_dssp             CSSSSCEEEEEEEEETTTSCTTSCEEEEECCEE
T ss_pred             CCCCCCcEEEEEEEEhhhhcCCCCccEEEECcC
Confidence            999899999999999999988877777777753

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.87  E-value=2.4e-21  Score=130.79  Aligned_cols=101  Identities=36%  Similarity=0.426  Sum_probs=87.9

Q ss_pred             ceEEEEEEEEeecCCCCC-CCCCCcEEEEEEC-----CEEEEeeeeeCCCCCeEeceEEEEeeCC--CceEEEEEEEcCC
Q 031185            5 FGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLG-----NQMAKTKVINSCLNPVWNEEHSLSLTEP--VGVLSLEVFDKDR   76 (164)
Q Consensus         5 ~~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~-----~~~~~T~~~~~t~~P~w~e~~~f~~~~~--~~~L~v~v~d~~~   76 (164)
                      .+.|.|+|++|++|+..+ .+.+||||++++.     ...++|++++++.||.|+|+|.|.+...  ...|.|+|||++.
T Consensus        30 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~  109 (149)
T 1a25_A           30 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDL  109 (149)
T ss_dssp             SSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECCS
T ss_pred             CCEEEEEEEEeeCCCCCCCCCCcCeEEEEEEECCCCCcceEecceeCCCCCCcCCcEEEEEeccccCCCEEEEEEEECCC
Confidence            468999999999999998 8899999999995     4579999999999999999999998764  2489999999999


Q ss_pred             CCCCCeeEEEEEeCcccccceeeeEEEEec
Q 031185           77 FKADDKMGKAYLNLQPIISAARLRHLVHVS  106 (164)
Q Consensus        77 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~  106 (164)
                      +++|++||++.+++.++... ..+.|+.|.
T Consensus       110 ~~~~~~iG~~~i~l~~l~~~-~~~~W~~L~  138 (149)
T 1a25_A          110 TSRNDFMGSLSFGISELQKA-GVDGWFKLL  138 (149)
T ss_dssp             SSCCEEEEEEEEEHHHHTTC-CEEEEEECB
T ss_pred             CCCCCEEEEEEEEHHHhCcC-ccCCeEEcc
Confidence            98999999999999988765 345565554

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.87  E-value=2e-21  Score=128.04  Aligned_cols=101  Identities=23%  Similarity=0.404  Sum_probs=82.7

Q ss_pred             cceEEEEEEEEeecCCCCC-CCCCCcEEEEEE-----CCEEEEeeeeeCCCCCeEeceEEEEeeC----CCceEEEEEEE
Q 031185            4 PFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKL-----GNQMAKTKVINSCLNPVWNEEHSLSLTE----PVGVLSLEVFD   73 (164)
Q Consensus         4 ~~~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~-----~~~~~~T~~~~~t~~P~w~e~~~f~~~~----~~~~L~v~v~d   73 (164)
                      ..+.|.|+|++|++|+..+ .+.+||||++++     +...++|++++++.||.|||+|.|.+..    ....|.++|||
T Consensus        16 ~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~~~V~d   95 (129)
T 2bwq_A           16 VGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWD   95 (129)
T ss_dssp             TTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEEEE
T ss_pred             CCCEEEEEEEEeeCCCCCCCCCCCCCEEEEEEecCCCCCcceecccccCCCCCccccEEEEccCCHHHhcCCeEEEEEEE
Confidence            4578999999999999998 888999999999     3567999999999999999999999532    12499999999


Q ss_pred             cCCCCC--CCeeEEEEEeCcccccceeeeEEEEe
Q 031185           74 KDRFKA--DDKMGKAYLNLQPIISAARLRHLVHV  105 (164)
Q Consensus        74 ~~~~~~--d~~lG~~~i~l~~l~~~~~~~~~~~l  105 (164)
                      ++.+++  +++||++.+++.++.... ...|+.|
T Consensus        96 ~d~~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~L  128 (129)
T 2bwq_A           96 QARVREEESEFLGEILIELETALLDD-EPHWYKL  128 (129)
T ss_dssp             C-------CEEEEEEEEEGGGCCCSS-CEEEEEC
T ss_pred             CCcCcCcCCceeEEEEEEccccCCCc-CCccEEC
Confidence            999876  999999999999987654 5666655

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus}

Probab=99.86  E-value=1.7e-21  Score=134.50  Aligned_cols=104  Identities=22%  Similarity=0.299  Sum_probs=93.0

Q ss_pred             ceEEEEEEEEeecCCCCC--CCCCCcEEEEEECC-----EEEEeeeeeCCCCCeEeceEEEEeeCCCceEEEEEE-EcCC
Q 031185            5 FGQLKVTVVQGKRLVIRD--FKSSDPYVVLKLGN-----QMAKTKVINSCLNPVWNEEHSLSLTEPVGVLSLEVF-DKDR   76 (164)
Q Consensus         5 ~~~L~v~i~~a~~L~~~~--~~~~dpyv~v~~~~-----~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~L~v~v~-d~~~   76 (164)
                      .+.|.|+|++|++|+..+  .+.+||||++++..     ..++|++++++.||.|||+|.|.+......|.|+|| |++.
T Consensus        29 ~~~L~V~v~~a~~L~~~d~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~L~~~V~~d~d~  108 (171)
T 2q3x_A           29 KGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDESPQGKVLQVIVWGDYGR  108 (171)
T ss_dssp             TTEEEEEEEEEESCCCCC---CCCEEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEECSSCCTTEEEEEEEEEECST
T ss_pred             CCEEEEEEEEeeCCCCCCcCCCCCCceEEEEEECCCccccceeCccCCCCCCCCCCcEEEEEecCCCCEEEEEEEEcCCC
Confidence            578999999999999988  48899999999842     378999999999999999999998766669999999 9999


Q ss_pred             CCCCCeeEEEEEeCcccccceeeeEEEEecCC
Q 031185           77 FKADDKMGKAYLNLQPIISAARLRHLVHVSSG  108 (164)
Q Consensus        77 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~  108 (164)
                      +++|++||++.++|.++..+.....|+.|...
T Consensus       109 ~~~d~~iG~~~i~l~~l~~~~~~~~W~~L~~~  140 (171)
T 2q3x_A          109 MDHKCFMGVAQILLEELDLSSMVIGWYKLFPP  140 (171)
T ss_dssp             TCSSEEEEEEEECGGGSCTTSCEEEEEECBCG
T ss_pred             CCCCCEEEEEEEEHHHcccCCCcceeEECCCc
Confidence            98999999999999999888888899998765

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}

Probab=99.86  E-value=1.1e-21  Score=132.24  Aligned_cols=105  Identities=24%  Similarity=0.360  Sum_probs=92.7

Q ss_pred             cceEEEEEEEEeecCCCCC--CCCCCcEEEEEEC-----CEEEEeeeeeCCCCCeEeceEEEEeeCCC---ceEEEEEEE
Q 031185            4 PFGQLKVTVVQGKRLVIRD--FKSSDPYVVLKLG-----NQMAKTKVINSCLNPVWNEEHSLSLTEPV---GVLSLEVFD   73 (164)
Q Consensus         4 ~~~~L~v~i~~a~~L~~~~--~~~~dpyv~v~~~-----~~~~~T~~~~~t~~P~w~e~~~f~~~~~~---~~L~v~v~d   73 (164)
                      ..+.|.|+|++|++|+..+  .+.+||||++++.     ...++|++++++.||.|||+|.|.+....   ..|.|+|||
T Consensus        21 ~~~~L~V~v~~a~~L~~~d~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~L~~~V~d  100 (148)
T 3fdw_A           21 QTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEIPESLLAQRTLQFSVWH  100 (148)
T ss_dssp             TTTEEEEEEEEEESCCCSBTTTTBCCEEEEEEEETCCSGGGEEECCCCSSCSSCEEEEEEEEECCSTTGGGCEEEEEEEE
T ss_pred             CCCEEEEEEEEecCCCCcccCCCCCCeEEEEEEEcCCcccCccccccCCCCCCCcEeeEEEEEeChhHhCceEEEEEEEE
Confidence            4678999999999999877  6789999999995     34789999999999999999999987643   379999999


Q ss_pred             cCCCCCCCeeEEEEEeCcccccceeeeEEEEecCC
Q 031185           74 KDRFKADDKMGKAYLNLQPIISAARLRHLVHVSSG  108 (164)
Q Consensus        74 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~  108 (164)
                      ++.+++|++||++.++|.++..+.....|++|...
T Consensus       101 ~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~  135 (148)
T 3fdw_A          101 HGRFGRNTFLGEAEIQMDSWKLDKKLDHCLPLHGK  135 (148)
T ss_dssp             ECGGGCEEEEEEEEEEHHHHHHHCCSEEEEECBCC
T ss_pred             CCCCcCCcEEEEEEEEcccccccCCccceEECcCc
Confidence            99998999999999999999888778888888754

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0

Probab=99.85  E-value=8.8e-21  Score=128.59  Aligned_cols=105  Identities=16%  Similarity=0.318  Sum_probs=89.2

Q ss_pred             cceEEEEEEEEeecCCCCCCCCCCcEEEEEEC-----CEEEEeeeeeCCCCCeEeceEEEEee--CCCceEEEEEEEcCC
Q 031185            4 PFGQLKVTVVQGKRLVIRDFKSSDPYVVLKLG-----NQMAKTKVINSCLNPVWNEEHSLSLT--EPVGVLSLEVFDKDR   76 (164)
Q Consensus         4 ~~~~L~v~i~~a~~L~~~~~~~~dpyv~v~~~-----~~~~~T~~~~~t~~P~w~e~~~f~~~--~~~~~L~v~v~d~~~   76 (164)
                      ..+.|.|+|++|++|+..+.+.+||||++.+.     ...++|++++++.||.|||+|.|.+.  .....|.|+|||++.
T Consensus        25 ~~~~L~V~v~~a~~L~~~d~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~  104 (153)
T 3fbk_A           25 QDRVLLLHIIEGKGLISKQPGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQEEDDQKRLLVTVWNRAS  104 (153)
T ss_dssp             SSSEEEEEEEEEESCCCCSSSCCCEEEEEEEESCSCCTTCEECCCCTTCSSCEEEEEEEEECCGGGTTSEEEEEEEECCS
T ss_pred             CCCEEEEEEEEeeCCCCCCCCCCCEEEEEEEEcCCCCccEEeccccCCCCCCccccEEEEecccHHhCCEEEEEEEeCCC
Confidence            56889999999999998877789999999992     34689999999999999999999984  333479999999999


Q ss_pred             CCC-CCeeEEEEEeCccccc-ceeeeEEEEecCC
Q 031185           77 FKA-DDKMGKAYLNLQPIIS-AARLRHLVHVSSG  108 (164)
Q Consensus        77 ~~~-d~~lG~~~i~l~~l~~-~~~~~~~~~l~~~  108 (164)
                      +++ |++||++.+++.++.. +.....|+.|...
T Consensus       105 ~~~~d~~lG~~~i~l~~l~~~~~~~~~W~~L~~~  138 (153)
T 3fbk_A          105 QSRQSGLIGCMSFGVKSLLTPDKEISGWYYLLGE  138 (153)
T ss_dssp             SGGGCEEEEEEEEEHHHHTC--CCEEEEEECBCT
T ss_pred             CCCCCcEEEEEEEEHHHhcCCCCccccEEECCCh
Confidence            876 8999999999999985 5666778777643

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.85  E-value=6.3e-22  Score=132.53  Aligned_cols=104  Identities=27%  Similarity=0.442  Sum_probs=89.9

Q ss_pred             ceEEEEEEEEeecCCCCC-CCCCCcEEEEEECCE--------------EEEeeeeeCCCCCeEeceEEEE-eeC---CCc
Q 031185            5 FGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGNQ--------------MAKTKVINSCLNPVWNEEHSLS-LTE---PVG   65 (164)
Q Consensus         5 ~~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~~~--------------~~~T~~~~~t~~P~w~e~~~f~-~~~---~~~   65 (164)
                      .+.|.|+|++|++|+..+ .+.+||||++++...              .++|++++++.||.|||+|.|. +..   ...
T Consensus        17 ~~~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~l~~~   96 (142)
T 1rh8_A           17 LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKK   96 (142)
T ss_dssp             TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTC
T ss_pred             CCEEEEEEEEecCCCCCCCCCCCCceEEEEEecCCCcccccccccccceeeccccCCCCCCCCCCEEEECCcCHHHccCC
Confidence            468999999999999999 889999999999652              4789999999999999999997 543   235


Q ss_pred             eEEEEEEEcCCCCCCCeeEEEEEeCcccccceeeeEEEEecCC
Q 031185           66 VLSLEVFDKDRFKADDKMGKAYLNLQPIISAARLRHLVHVSSG  108 (164)
Q Consensus        66 ~L~v~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~  108 (164)
                      .|.|+|||++.++++++||++.++|.++........|++|...
T Consensus        97 ~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~~~  139 (142)
T 1rh8_A           97 TLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKEQ  139 (142)
T ss_dssp             EEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEEEECBCC
T ss_pred             EEEEEEEECCCCCCCceEEEEEEeccccccCCCCCeEEECCcc
Confidence            8999999999998999999999999999877667777777644

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=99.85  E-value=2.7e-20  Score=137.81  Aligned_cols=105  Identities=29%  Similarity=0.359  Sum_probs=93.3

Q ss_pred             cceEEEEEEEEeecCCCCC-CCCCCcEEEEEEC---CEEEEeeeeeCCCCCeEeceEEEEeeCC---CceEEEEEEEcCC
Q 031185            4 PFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLG---NQMAKTKVINSCLNPVWNEEHSLSLTEP---VGVLSLEVFDKDR   76 (164)
Q Consensus         4 ~~~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~---~~~~~T~~~~~t~~P~w~e~~~f~~~~~---~~~L~v~v~d~~~   76 (164)
                      ..+.|.|+|++|++|+..+ .+.+||||++++.   ...++|++++++.||.|||+|.|.+...   ...|.++|||++.
T Consensus        17 ~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~wne~f~f~v~~~~~~~~~l~~~V~d~d~   96 (284)
T 2r83_A           17 QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELAGKTLVMAVYDFDR   96 (284)
T ss_dssp             TTTEEEEEEEEEECCCCCSSSSSCCEEEEEEEETCTTSCEECCCCCSCSSCEEEEEEEECCCGGGCTTCEEEEEEEECCS
T ss_pred             CCCEEEEEEEEeeCCCCCCCCCCCCeEEEEEEEcCCCceEeCCcccCCCCCeeCceEEEEechHHhCcCEEEEEEEECCC
Confidence            5688999999999999998 8899999999994   3468999999999999999999998753   3489999999999


Q ss_pred             CCCCCeeEEEEEeCcccccceeeeEEEEecCC
Q 031185           77 FKADDKMGKAYLNLQPIISAARLRHLVHVSSG  108 (164)
Q Consensus        77 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~  108 (164)
                      +++|++||++.++|.++..+.....|+.|...
T Consensus        97 ~~~~~~lG~~~i~l~~l~~~~~~~~w~~L~~~  128 (284)
T 2r83_A           97 FSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSA  128 (284)
T ss_dssp             SSCCCEEEEEEEEGGGCCCSSCEEEEEECBCC
T ss_pred             CCCCceeEEEEEcchhcccCCcceeEEEeecc
Confidence            98999999999999999888888888888643

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.85  E-value=1.8e-20  Score=124.91  Aligned_cols=104  Identities=22%  Similarity=0.335  Sum_probs=87.8

Q ss_pred             cceEEEEEEEEeecCCCCC-C-CCCCcEEEEEEC---CEEEEeeeeeCCCCCeEeceEEEE-eeCC---CceEEEEEEEc
Q 031185            4 PFGQLKVTVVQGKRLVIRD-F-KSSDPYVVLKLG---NQMAKTKVINSCLNPVWNEEHSLS-LTEP---VGVLSLEVFDK   74 (164)
Q Consensus         4 ~~~~L~v~i~~a~~L~~~~-~-~~~dpyv~v~~~---~~~~~T~~~~~t~~P~w~e~~~f~-~~~~---~~~L~v~v~d~   74 (164)
                      ..+.|.|+|++|++|+..+ . +.+||||++++.   ...++|++++++.||.|||+|.|. +...   ...|.|+|||+
T Consensus        20 ~~~~L~v~v~~a~~L~~~d~~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~   99 (138)
T 1ugk_A           20 ERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSF   99 (138)
T ss_dssp             GGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEEEE
T ss_pred             CCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEecCCCceEecCcCcCCCCCcEeeEEEEcCcCHHHhccCEEEEEEEEC
Confidence            5678999999999999988 5 889999999994   367999999999999999999996 6543   24899999999


Q ss_pred             CCCCCCCeeEEEEEeCcccccceee-eEEEEecC
Q 031185           75 DRFKADDKMGKAYLNLQPIISAARL-RHLVHVSS  107 (164)
Q Consensus        75 ~~~~~d~~lG~~~i~l~~l~~~~~~-~~~~~l~~  107 (164)
                      +.+++|++||++.++|.++..+... ..|+.|..
T Consensus       100 d~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~l~~  133 (138)
T 1ugk_A          100 DRFSRDDIIGEVLIPLSGIELSEGKMLMNREIIS  133 (138)
T ss_dssp             CSSCCCCCCEEEEEECTTCCCTTCCEEEEEECBS
T ss_pred             CCCCCCcEEEEEEEehhHccCCCCcchhhhhhhc
Confidence            9999999999999999999775433 44555553

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.85  E-value=5e-21  Score=127.87  Aligned_cols=104  Identities=22%  Similarity=0.393  Sum_probs=88.4

Q ss_pred             cceEEEEEEEEeecCCCCC-CCCCCcEEEEEE-----CCEEEEeeeeeCCCCCeEeceEEEEe-eCC---CceEEEEEEE
Q 031185            4 PFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKL-----GNQMAKTKVINSCLNPVWNEEHSLSL-TEP---VGVLSLEVFD   73 (164)
Q Consensus         4 ~~~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~-----~~~~~~T~~~~~t~~P~w~e~~~f~~-~~~---~~~L~v~v~d   73 (164)
                      ..+.|.|+|++|++|+..+ .+.+||||++++     ....++|++++++.||.|||+|.|.+ ...   ...|.|+|||
T Consensus        19 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d   98 (141)
T 1v27_A           19 VGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWD   98 (141)
T ss_dssp             TTTEEEEEEEEEESCCCCSSSCCCCEEEECCCSSCCSSSSCCBCCCCSSCSSCCCCCCCEECSCCTTGGGTCEEEEEEEE
T ss_pred             CCCEEEEEEEEccCCCCcCCCCCCCCEEEEEEecCCCCCcceeCccccCCCCCccccEEEEccCCHHHhcCCEEEEEEEE
Confidence            4578999999999999998 889999999998     35678999999999999999999995 322   2489999999


Q ss_pred             cCCCCC--CCeeEEEEEeCcccccceeeeEEEEecCC
Q 031185           74 KDRFKA--DDKMGKAYLNLQPIISAARLRHLVHVSSG  108 (164)
Q Consensus        74 ~~~~~~--d~~lG~~~i~l~~l~~~~~~~~~~~l~~~  108 (164)
                      ++.+++  +++||++.++|.++.... ...|+.|...
T Consensus        99 ~d~~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~L~~~  134 (141)
T 1v27_A           99 QARVREEESEFLGEILIELETALLDD-EPHWYKLQTH  134 (141)
T ss_dssp             BCSSSSCCBCCCEEEEEEGGGCCCSS-EEEEEECBCC
T ss_pred             CCCCcCCCCceEEEEEEEccccCCCC-CCceEECccc
Confidence            999976  899999999999987654 5667776543

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.85  E-value=2e-20  Score=124.74  Aligned_cols=102  Identities=22%  Similarity=0.236  Sum_probs=86.5

Q ss_pred             cceEEEEEEEEeecCCCCC-CCCCCcEEEEEEC---C-EEEEeeeeeCCCCCeEeceEEEEeeCC---CceEEEEEEEcC
Q 031185            4 PFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLG---N-QMAKTKVINSCLNPVWNEEHSLSLTEP---VGVLSLEVFDKD   75 (164)
Q Consensus         4 ~~~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~---~-~~~~T~~~~~t~~P~w~e~~~f~~~~~---~~~L~v~v~d~~   75 (164)
                      ..+.|.|+|++|++   ++ .+.+||||++++.   + ..++|++++++.||.|||+|.|.+...   ...|.|+|||++
T Consensus        24 ~~~~L~V~v~~a~~---~d~~g~sDPyv~v~l~~~~~~~~~kT~v~~~tlnP~wnE~f~f~v~~~~l~~~~L~~~V~d~d  100 (138)
T 1wfm_A           24 QKAELFVTRLEAVT---SNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCD  100 (138)
T ss_dssp             TTTEEEEEEEEEEC---CCCSSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEECC
T ss_pred             CCCEEEEEEEEEEc---CCCCCCcceEEEEEEEcCCCcccEecccCcCCCCCcCCceEEEEecHHHcCCCEEEEEEEECC
Confidence            46789999999993   45 7889999999993   2 358999999999999999999998754   248999999999


Q ss_pred             CCCCCCeeEEEEEeCcccccceeeeEEEEecCC
Q 031185           76 RFKADDKMGKAYLNLQPIISAARLRHLVHVSSG  108 (164)
Q Consensus        76 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~  108 (164)
                      .+++|++||++.++|.++........|+.|...
T Consensus       101 ~~~~dd~lG~~~i~l~~l~~~~~~~~W~~L~~~  133 (138)
T 1wfm_A          101 RFSRHSVAGELRLGLDGTSVPLGAAQWGELKTS  133 (138)
T ss_dssp             SSCTTSCSEEEEEESSSSSSCTTCCEEEECCCC
T ss_pred             CCCCCcEEEEEEEEcccccCcccccceeeCcCC
Confidence            999999999999999999766666777777643

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.84  E-value=7.3e-21  Score=127.36  Aligned_cols=104  Identities=25%  Similarity=0.306  Sum_probs=88.1

Q ss_pred             cceEEEEEEEEeecCCCCC-CCCCCcEEEEEECC-----EEEEeeeeeCCCCCeEeceEEEEeeCC---CceEEEEEEEc
Q 031185            4 PFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGN-----QMAKTKVINSCLNPVWNEEHSLSLTEP---VGVLSLEVFDK   74 (164)
Q Consensus         4 ~~~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~~-----~~~~T~~~~~t~~P~w~e~~~f~~~~~---~~~L~v~v~d~   74 (164)
                      ..+.|.|+|++|++|+..+ .+ +||||++++..     ..++|++++++.||.|||+|.|.+...   ...|.|+|||+
T Consensus        22 ~~~~L~v~v~~a~~L~~~d~~g-~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~  100 (142)
T 2dmg_A           22 QRNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSLPEVQRRTLDVAVKNS  100 (142)
T ss_dssp             TTTEEEEEEEEEECCCCSSTTC-CCEEEEEEEESCCCSSSCEECCCCCSCSSCEEEEEEEECCCHHHHHHCEEEEEEEEC
T ss_pred             CCCEEEEEEEEeECCCCCCCCC-CCeeEEEEEEcCCCCCCcccCCccCCCCCCCcCceEEEEecHHHhCcCEEEEEEEEC
Confidence            4678999999999999998 77 99999999932     568999999999999999999998642   23899999999


Q ss_pred             CCCCC--CCeeEEEEEeCcccccceeeeEEEEecCC
Q 031185           75 DRFKA--DDKMGKAYLNLQPIISAARLRHLVHVSSG  108 (164)
Q Consensus        75 ~~~~~--d~~lG~~~i~l~~l~~~~~~~~~~~l~~~  108 (164)
                      +.++.  +++||++.++|.++........|+.|...
T Consensus       101 d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~L~~~  136 (142)
T 2dmg_A          101 GGFLSKDKGLLGKVLVALASEELAKGWTQWYDLTED  136 (142)
T ss_dssp             CCSSCCSCCCCEEEEEECCCSTTTTCBCCBCCCBCS
T ss_pred             CCccccCCcEEEEEEEecccccccccccceeeccCC
Confidence            98753  57999999999998777666777777643

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.84  E-value=7.3e-21  Score=128.09  Aligned_cols=105  Identities=22%  Similarity=0.243  Sum_probs=88.9

Q ss_pred             CcceEEEEEEEEeecCCCC-C-------CCCCCcEEEEEEC---CEEEEeeeeeCCCCCeEeceEEEEeeCC---CceEE
Q 031185            3 QPFGQLKVTVVQGKRLVIR-D-------FKSSDPYVVLKLG---NQMAKTKVINSCLNPVWNEEHSLSLTEP---VGVLS   68 (164)
Q Consensus         3 ~~~~~L~v~i~~a~~L~~~-~-------~~~~dpyv~v~~~---~~~~~T~~~~~t~~P~w~e~~~f~~~~~---~~~L~   68 (164)
                      ...+.|.|+|++|++|+.. +       .+.+||||++++.   ...++|++++++.||.|||+|.|.+...   ...|.
T Consensus        23 ~~~~~L~V~v~~a~~L~~~~d~~g~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~  102 (147)
T 2enp_A           23 LLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEERYTFEIPFLEAQRRTLL  102 (147)
T ss_dssp             TTTTEEEEEEEEEECCCCSCSSCCSSCTTCCCCCEEEEEEETCCSSCEECCCCCSCSSCCCCBCCEECCCHHHHHHSEEE
T ss_pred             CCCCEEEEEEEEEeCCCCccccccccccCCCCCcEEEEEEEeCCCcceEeecccCCCCCeEeeeEEEEeChHHhccCEEE
Confidence            3567899999999999984 3       3579999999995   3578999999999999999999998643   24899


Q ss_pred             EEEEEcCCCCCCCeeEEEEEeCcccccceeeeEEEEecC
Q 031185           69 LEVFDKDRFKADDKMGKAYLNLQPIISAARLRHLVHVSS  107 (164)
Q Consensus        69 v~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~  107 (164)
                      |+|||++.++++++||++.++|.++........|+.|..
T Consensus       103 ~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~  141 (147)
T 2enp_A          103 LTVVDFDKFSRHCVIGKVSVPLCEVDLVKGGHWWKALIP  141 (147)
T ss_dssp             EEEECCSTTCCSCCCEEEEEETTTSCTTTCCCEEECCBC
T ss_pred             EEEEECCCCcCCcEEEEEEEechhcCCCCCccEEEEeec
Confidence            999999999899999999999999977766667766654

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus}

Probab=99.84  E-value=4.5e-20  Score=122.75  Aligned_cols=101  Identities=26%  Similarity=0.424  Sum_probs=85.5

Q ss_pred             CcceEEEEEEEEeecCCCCC-CCCCCcEEEEEECC-----EEEEeeeeeCCCCCeEeceEEEEeeCCC---ceEEEEEEE
Q 031185            3 QPFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGN-----QMAKTKVINSCLNPVWNEEHSLSLTEPV---GVLSLEVFD   73 (164)
Q Consensus         3 ~~~~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~~-----~~~~T~~~~~t~~P~w~e~~~f~~~~~~---~~L~v~v~d   73 (164)
                      ...+.|.|+|++|++|+..+ .+.+||||++++..     ..++|++++++.||.|||+|.|.+....   ..|.++|||
T Consensus        13 ~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~~~V~d   92 (138)
T 3n5a_A           13 PSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTEKLRETTIIITVMD   92 (138)
T ss_dssp             TTTTEEEEEEEEEESCCCCBTTTBCCEEEEEEEEETTEEEEEEECCCCSSCSSCEEEEEEEEECCGGGGGGEEEEEEEEE
T ss_pred             CCCCeEEEEEEEeeCCCCcCCCCCcCeEEEEEEEeCCCccceEeCccccCCCCCcCcceEEEECChhhcCceEEEEEEEE
Confidence            35688999999999999988 88999999999953     4689999999999999999999987654   489999999


Q ss_pred             cCCCCCCCeeEEEEEeCcccccceeeeEEEEe
Q 031185           74 KDRFKADDKMGKAYLNLQPIISAARLRHLVHV  105 (164)
Q Consensus        74 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l  105 (164)
                      ++.+++|++||++.+++.++..+  ...|+.+
T Consensus        93 ~~~~~~~~~lG~~~i~l~~~~~~--~~~W~~l  122 (138)
T 3n5a_A           93 KDKLSRNDVIGKIYLSWKSGPGE--VKHWKDM  122 (138)
T ss_dssp             CCSSSCCEEEEEEEESSSSCHHH--HHHHHHH
T ss_pred             CCCCCCCcEEEEEEEccccCChH--HHHHHHH
Confidence            99998999999999999975433  2344444

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A*

Probab=99.84  E-value=6.7e-20  Score=124.94  Aligned_cols=90  Identities=29%  Similarity=0.447  Sum_probs=80.4

Q ss_pred             cceEEEEEEEEeecCCCCC-CCCCCcEEEEEECC-----EEEEeeeeeCCCCCeEeceEEEEeeCC---CceEEEEEEEc
Q 031185            4 PFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGN-----QMAKTKVINSCLNPVWNEEHSLSLTEP---VGVLSLEVFDK   74 (164)
Q Consensus         4 ~~~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~~-----~~~~T~~~~~t~~P~w~e~~~f~~~~~---~~~L~v~v~d~   74 (164)
                      ..+.|.|+|++|++|+..+ .+.+||||++++..     ..++|++++++.||.|||+|.|.+...   ...|.|+|||+
T Consensus        23 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~  102 (159)
T 1tjx_A           23 TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDY  102 (159)
T ss_dssp             TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEEC
T ss_pred             CCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCceeceeeCceecCCCCCcccceEEEEcCHHHhCCcEEEEEEEEC
Confidence            5678999999999999998 88999999999942     468999999999999999999998754   24799999999


Q ss_pred             CCCCCCCeeEEEEEeCccc
Q 031185           75 DRFKADDKMGKAYLNLQPI   93 (164)
Q Consensus        75 ~~~~~d~~lG~~~i~l~~l   93 (164)
                      +.+++|++||.+.+++..+
T Consensus       103 d~~~~~~~iG~~~i~l~~~  121 (159)
T 1tjx_A          103 DKIGKNDAIGKVFVGYNST  121 (159)
T ss_dssp             CSSSCCEEEEEEEEETTCC
T ss_pred             CCCCCCceEEEEEECCCCC
Confidence            9998999999999999865

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B

Probab=99.84  E-value=8.3e-20  Score=145.04  Aligned_cols=123  Identities=28%  Similarity=0.450  Sum_probs=104.4

Q ss_pred             cceEEEEEEEEeecCCCCC-CCCCCcEEEEEECCEEEEeeeeeCCCCCeEeceEEEEeeCCC-ceEEEEEEEcCCCCCCC
Q 031185            4 PFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEPV-GVLSLEVFDKDRFKADD   81 (164)
Q Consensus         4 ~~~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~-~~L~v~v~d~~~~~~d~   81 (164)
                      ..|.|.|+|++|++|+..+ .|.+||||++.+++..++|++++++.||.|+|+|.|.+.... ..|.++|||++.+++|+
T Consensus       385 ~~~~l~v~v~~a~~L~~~d~~~~sdpyv~v~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~~~~~~l~~~v~d~d~~~~~d  464 (510)
T 3jzy_A          385 GIGRLMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFIKDLYQDVLCLTLFDRDQFSPDD  464 (510)
T ss_dssp             -CEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEESCTTTCEEEEEEEECCSSSSCC
T ss_pred             CCceEEEEeceeecCCCCCCCCCCCeEEEEEECCeeccCCccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCCCCC
Confidence            5689999999999999998 899999999999999999999999999999999999997665 37999999999999999


Q ss_pred             eeEEEEEeCcccccceeeeEEEEecCCceeeEEEeeCCCceeeccceEEEECCEEEeeeeEEEceeeeeeEEEEEEEEeC
Q 031185           82 KMGKAYLNLQPIISAARLRHLVHVSSGETPLRKIIPDSENCLARESSIICINGEVVQNVWLRLCEVESGEIELKVKIVDA  161 (164)
Q Consensus        82 ~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~G~v~~~l~~~~~  161 (164)
                      +||++.+++.++..+.....                                   ....|+++.+..+|+|+++++..-+
T Consensus       465 ~lG~~~~~l~~l~~~~~~~~-----------------------------------~~~~~~~l~~~~~G~i~l~~~l~lf  509 (510)
T 3jzy_A          465 FLGRTEIPVAKIRTEQESKG-----------------------------------PMTRRLLLHEVPTGEVWVRFDLQLF  509 (510)
T ss_dssp             EEEEEEEEHHHHHHHHHHHC-----------------------------------SCCEEEECBSSSSCEEEEEEEEEEC
T ss_pred             ceEEEEEEHHHhccccCCCC-----------------------------------ceeeeecCCCCCCceEEEEEEEEEc
Confidence            99999999998876532110                                   0235777777788999999887543

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A

Probab=99.83  E-value=1.1e-19  Score=124.81  Aligned_cols=100  Identities=30%  Similarity=0.384  Sum_probs=85.7

Q ss_pred             cceEEEEEEEEeecCCCCC-CCCCCcEEEEEECC-----EEEEeeeeeCCCCCeEeceEEEEeeCC---CceEEEEEEEc
Q 031185            4 PFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGN-----QMAKTKVINSCLNPVWNEEHSLSLTEP---VGVLSLEVFDK   74 (164)
Q Consensus         4 ~~~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~~-----~~~~T~~~~~t~~P~w~e~~~f~~~~~---~~~L~v~v~d~   74 (164)
                      ..+.|.|+|++|++|+..+ .+.+||||++++..     ..++|++++++.||.|||+|.|.+...   ...|.|+|||+
T Consensus        35 ~~~~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~  114 (166)
T 2cm5_A           35 QQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDY  114 (166)
T ss_dssp             TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEEC
T ss_pred             CCCEEEEEEEEeECCCCccCCCCCCcEEEEEEECCCCccceEeCCcccCCCCCcccceEEEEcchHhcCCCEEEEEEEEC
Confidence            5678999999999999998 88999999999964     579999999999999999999998753   34899999999


Q ss_pred             CCCCCCCeeEEEEEeCcccccceeeeEEEEe
Q 031185           75 DRFKADDKMGKAYLNLQPIISAARLRHLVHV  105 (164)
Q Consensus        75 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l  105 (164)
                      +.++++++||++.+++..+..  ....|+.|
T Consensus       115 d~~~~~~~iG~~~i~l~~~~~--~~~~W~~l  143 (166)
T 2cm5_A          115 DIGKSNDYIGGCQLGISAKGE--RLKHWYEC  143 (166)
T ss_dssp             CSSSCCEEEEEEEEETTCCHH--HHHHHHHH
T ss_pred             CCCCCCcEEEeEEEecccCCc--hhHHHHHH
Confidence            999899999999999998643  23345444

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A

Probab=99.83  E-value=1.2e-19  Score=122.90  Aligned_cols=101  Identities=24%  Similarity=0.312  Sum_probs=80.9

Q ss_pred             cceEEEEEEEEeecCCCCC-CCCCCcEEEEEE--CCE---EEEeeeeeCCCCCeEeceEEEEeeCCC---ceEEEEEEEc
Q 031185            4 PFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKL--GNQ---MAKTKVINSCLNPVWNEEHSLSLTEPV---GVLSLEVFDK   74 (164)
Q Consensus         4 ~~~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~--~~~---~~~T~~~~~t~~P~w~e~~~f~~~~~~---~~L~v~v~d~   74 (164)
                      ..+.|.|+|++|++|+..+ .+.+||||++++  ++.   .++|++++++.||.|||+|.|.+....   ..|.|+|||+
T Consensus        28 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~v~V~d~  107 (153)
T 1w15_A           28 TTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDS  107 (153)
T ss_dssp             TTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEEEEC
T ss_pred             CCCEEEEEEEEeECCCCcCCCCCCCeEEEEEEEeCCeEeceEecCcccCCCCCeecceEEEECCHHHhCceEEEEEEEeC
Confidence            5678999999999999988 889999999999  443   579999999999999999999987653   4899999999


Q ss_pred             CCCCCCCeeEEEEEeCcccccceeeeEEEEec
Q 031185           75 DRFKADDKMGKAYLNLQPIISAARLRHLVHVS  106 (164)
Q Consensus        75 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~  106 (164)
                      +.++++++||++.+++..  .......|+.|.
T Consensus       108 d~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~  137 (153)
T 1w15_A          108 ERGSRNEVIGRLVLGATA--EGSGGGHWKEIC  137 (153)
T ss_dssp             CTTSCCEEEEEEEESTTC--CSHHHHHHHHHH
T ss_pred             CCCCCCcEEEEEEECCCC--CchHHHHHHHHH
Confidence            999899999999999987  233344455543

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus}

Probab=99.82  E-value=9.6e-19  Score=115.22  Aligned_cols=121  Identities=14%  Similarity=0.200  Sum_probs=101.5

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCcEEEEEECCEEEEeeeee-CCCCCeEeceEEEEeeCCC---ceEEEEEEEcCCCCCC
Q 031185            5 FGQLKVTVVQGKRLVIRDFKSSDPYVVLKLGNQMAKTKVIN-SCLNPVWNEEHSLSLTEPV---GVLSLEVFDKDRFKAD   80 (164)
Q Consensus         5 ~~~L~v~i~~a~~L~~~~~~~~dpyv~v~~~~~~~~T~~~~-~t~~P~w~e~~~f~~~~~~---~~L~v~v~d~~~~~~d   80 (164)
                      ..-|+|.|.+|.+|+    +.+|||+++.+-+.+++|++++ ++.+|.|||.|.+++..+.   ..|.++|+|++.++++
T Consensus        20 ~msL~V~l~~a~~Lp----g~~Dp~akv~FRg~k~kTkvi~~~~~npvfnE~F~wpl~~~ld~~e~L~v~V~d~~~v~~n   95 (144)
T 3l9b_A           20 HMALIVHLKTVSELR----GRADRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYSKVFSN   95 (144)
T ss_dssp             CEEEEEEEEEEESCC----SCEEEEEEEEETTEEEECCCEEEECSCEEEEEEEEEEESSCCCTTCEEEEEEEEECTTSCC
T ss_pred             cEEEEEEEEEecCCC----CCCCCeEEEEEeccceeeEEeccCCCCceEcceEEecCCCCCCCCCEEEEEEEECccccCC
Confidence            456899999999997    5789999999999999999998 6999999999999987643   3999999999999999


Q ss_pred             CeeEEEEEeCcccccceeeeEEEEecCCceeeEEEeeCCCceeeccceEEEECCEEEeeeeEEEceeeeeeEEEEEEEEe
Q 031185           81 DKMGKAYLNLQPIISAARLRHLVHVSSGETPLRKIIPDSENCLARESSIICINGEVVQNVWLRLCEVESGEIELKVKIVD  160 (164)
Q Consensus        81 ~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~G~v~~~l~~~~  160 (164)
                      ++||++.++|.++...+.......|.+.                        +           .+...+.|.+.+.|.|
T Consensus        96 rlIG~~~i~Lq~lv~~~~l~l~~~LvD~------------------------n-----------~~~~~a~I~l~l~Y~p  140 (144)
T 3l9b_A           96 KLIGTFRMVLQKVVEENRVEVSDTLIDD------------------------N-----------NAIIKTSLSMEVRYQA  140 (144)
T ss_dssp             EEEEEEEEESHHHHHHSEEEEEEEEECT------------------------T-----------SCEEEEEEEEEEEEEE
T ss_pred             CEEEEEEEEhHHhccCCeEEEeecccCC------------------------C-----------CCccccEEEEEEEecC
Confidence            9999999999999888765544333322                        0           2234599999999999


Q ss_pred             CCCC
Q 031185          161 APSR  164 (164)
Q Consensus       161 ~~~~  164 (164)
                      ++|.
T Consensus       141 p~g~  144 (144)
T 3l9b_A          141 ADGT  144 (144)
T ss_dssp             TTCC
T ss_pred             CCCC
Confidence            9874

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=99.82  E-value=1.4e-19  Score=134.81  Aligned_cols=104  Identities=30%  Similarity=0.391  Sum_probs=85.8

Q ss_pred             CcceEEEEEEEEeecCCCCC-CCCCCcEEEEEE---CCEEEEeeeeeCCCCCeEeceEEEEeeCCC---ceEEEEEEEcC
Q 031185            3 QPFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKL---GNQMAKTKVINSCLNPVWNEEHSLSLTEPV---GVLSLEVFDKD   75 (164)
Q Consensus         3 ~~~~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~---~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~---~~L~v~v~d~~   75 (164)
                      ...+.|.|+|++|++|+.++ .+.+||||++++   +...++|++++++.||.|+|+|.|.+....   ..|.|+|||++
T Consensus        17 ~~~~~L~v~v~~a~~L~~~d~~g~~dPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~V~d~d   96 (296)
T 1dqv_A           17 YGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFD   96 (296)
T ss_dssp             SSSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEECC
T ss_pred             CCCCEEEEEEEEeECCCCcCCCCCcCeEEEEEEEcCCCeeEeCCccCCCCCCcEeeEEEEEecHHHhcCCEEEEEEEEcC
Confidence            35688999999999999998 889999999999   456799999999999999999999986442   38999999999


Q ss_pred             CCCCCCeeEEEEEe-Cccccc-ceeeeEEEEec
Q 031185           76 RFKADDKMGKAYLN-LQPIIS-AARLRHLVHVS  106 (164)
Q Consensus        76 ~~~~d~~lG~~~i~-l~~l~~-~~~~~~~~~l~  106 (164)
                      .+++|++||++.++ +.++.. ......|+.|.
T Consensus        97 ~~~~~~~iG~~~i~~l~~~~~~~~~~~~w~~L~  129 (296)
T 1dqv_A           97 RFSRHDLIGQVVLDNLLELAEQPPDRPLWRDIL  129 (296)
T ss_dssp             SSSCCCEEEEEECCCTTGGGSSCSSCCCCEECB
T ss_pred             CCCCCceEEEEEeccccccccCCccceeeeccc
Confidence            99999999999995 444433 22334565554

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.82  E-value=4.1e-19  Score=117.39  Aligned_cols=89  Identities=24%  Similarity=0.312  Sum_probs=74.8

Q ss_pred             cceEEEEEEEEeecCCCCCCCCCCcEEEEEECCEEEEeeee-eCCCCCeEeceEEEEeeCCCceEEEEEEEcCCCCCCCe
Q 031185            4 PFGQLKVTVVQGKRLVIRDFKSSDPYVVLKLGNQMAKTKVI-NSCLNPVWNEEHSLSLTEPVGVLSLEVFDKDRFKADDK   82 (164)
Q Consensus         4 ~~~~L~v~i~~a~~L~~~~~~~~dpyv~v~~~~~~~~T~~~-~~t~~P~w~e~~~f~~~~~~~~L~v~v~d~~~~~~d~~   82 (164)
                      ..+.|.|+|++|++++.  .+.+||||+++.  +..+|+++ .++.||.|||+|.|.+......|.|+|||++ +++|++
T Consensus         3 ~~~~L~V~V~~A~~l~~--~g~~DPYv~v~~--~~~kt~~~~~~t~nP~WnE~f~f~v~~~~~~L~~~V~D~d-~~~dd~   77 (131)
T 2cjt_A            3 VMSLLCVGVKKAKFDGA--QEKFNTYVTLKV--QNVKSTTIAVRGSQPSWEQDFMFEINRLDLGLTVEVWNKG-LIWDTM   77 (131)
T ss_dssp             CCEEEEEEEEEEECSSC--GGGCEEEEEEEE--TTEEEECCCEESSSCEEEEEEEEEECCCSSEEEEEEEECC-SSCEEE
T ss_pred             cceEEEEEEEEeECCCC--CCCcCeEEEEEe--cCEEEeEecCCCCCceECCEEEEEEeCCCCeEEEEEEECC-CCCCCe
Confidence            56899999999998853  568899999992  33445544 4699999999999999877679999999999 889999


Q ss_pred             eEEEEEeCcccccce
Q 031185           83 MGKAYLNLQPIISAA   97 (164)
Q Consensus        83 lG~~~i~l~~l~~~~   97 (164)
                      ||++.++|.++....
T Consensus        78 iG~~~i~l~~l~~~~   92 (131)
T 2cjt_A           78 VGTVWIPLRTIRQSN   92 (131)
T ss_dssp             EEEEEEEGGGSCBCS
T ss_pred             EEEEEEEHHHhhhcC
Confidence            999999999986543

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus}

Probab=99.79  E-value=1.7e-18  Score=137.81  Aligned_cols=100  Identities=22%  Similarity=0.292  Sum_probs=89.7

Q ss_pred             cceEEEEEEEEeecCCCCC-CCCCCcEEEEEECCEEEEeeeeeCCCCCeEeceEEEEeeC--CCceEEEEEEEcCCCCCC
Q 031185            4 PFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTE--PVGVLSLEVFDKDRFKAD   80 (164)
Q Consensus         4 ~~~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~--~~~~L~v~v~d~~~~~~d   80 (164)
                      ..+.|.|+|++|++|+. + .+.+||||+++++++.++|++++++.||.|||+|.|.+..  ....|.|+|||+|..++|
T Consensus       392 ~~~~L~V~V~~A~~L~~-D~~g~sDPYV~v~l~~~~~kTkvik~tlNP~Wne~f~f~~~~~~~~~~L~~~V~D~D~~~~d  470 (540)
T 3nsj_A          392 GLAHLVVSNFRAEHLWG-DYTTATDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVLLSTGGPLRVQVWDADYGWDD  470 (540)
T ss_dssp             TEEEEEEEEEEEESCCC-SSCSCCCEEEEEEETTEEEECCCBCSCSSCBCCCCEEEEEEETTTCCCEEEEEEECCSSSCC
T ss_pred             cccEEEEEEEEccCCCc-ccCCCcCeEEEEEECCEeeeeeeecCCCCCCCCeEEEEEEecCCCCCEEEEEEEECCCCCCC
Confidence            47899999999999998 8 8899999999999999999999999999999999998643  445899999999999899


Q ss_pred             CeeEEEEEeCcccccceeeeEEEEecCC
Q 031185           81 DKMGKAYLNLQPIISAARLRHLVHVSSG  108 (164)
Q Consensus        81 ~~lG~~~i~l~~l~~~~~~~~~~~l~~~  108 (164)
                      |+||++.++|..    +.++.|+.|..|
T Consensus       471 D~LG~~~~~L~~----g~~~~~~~l~~G  494 (540)
T 3nsj_A          471 DLLGSCDRSPHS----GFHEVTCELNHG  494 (540)
T ss_dssp             EEEEEEEECCCS----EEEEEEEECSSS
T ss_pred             CEEEEEEEEeeC----CcEEEEEEcCCe
Confidence            999999999882    456788888877

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.79  E-value=8.3e-18  Score=115.41  Aligned_cols=89  Identities=22%  Similarity=0.295  Sum_probs=75.3

Q ss_pred             cceEEEEEEEEeecCCCCCCCCCCcEEEEEECCEEEEeeeee-CCCCCeEeceEEEEeeCCCceEEEEEEEcCCCCCCCe
Q 031185            4 PFGQLKVTVVQGKRLVIRDFKSSDPYVVLKLGNQMAKTKVIN-SCLNPVWNEEHSLSLTEPVGVLSLEVFDKDRFKADDK   82 (164)
Q Consensus         4 ~~~~L~v~i~~a~~L~~~~~~~~dpyv~v~~~~~~~~T~~~~-~t~~P~w~e~~~f~~~~~~~~L~v~v~d~~~~~~d~~   82 (164)
                      ..+.|.|+|++|++++.  .+.+||||+++  .+..+|+++. ++.||.|||+|.|.+......|.|+|||++ +++|++
T Consensus        12 ~~~~L~V~V~~A~~l~~--~g~~DPYV~v~--~~~~kt~~~~~~t~nP~WnE~f~f~v~~~~~~L~~~V~D~d-~~~dd~   86 (167)
T 2cjs_A           12 ILSLLCVGVKKAKFDGA--QEKFNTYVTLK--VQNVESTTIAVRGSQPSWEQDFMFEINRLDLGLTVEVWNKG-LIWDTM   86 (167)
T ss_dssp             CCCEEEEEEEEEECSSC--GGGCEEEEEEE--ETTEEEECCCEESSSCEEEEEEEEECCCTTSEEEEEEEECC-SSCCEE
T ss_pred             ceEEEEEEEEEEECCCC--CCCCCeEEEEE--ecceEEEEecCCCCCCCCCCEEEEEeeCCCCEEEEEEEECC-CCCCce
Confidence            57899999999998843  57889999999  2335566654 699999999999999877679999999999 879999


Q ss_pred             eEEEEEeCcccccce
Q 031185           83 MGKAYLNLQPIISAA   97 (164)
Q Consensus        83 lG~~~i~l~~l~~~~   97 (164)
                      ||++.++|.++....
T Consensus        87 iG~~~i~L~~l~~~~  101 (167)
T 2cjs_A           87 VGTVWIPLRTIRQSN  101 (167)
T ss_dssp             EEEEEEEGGGSCBCS
T ss_pred             EEEEEEEHHHhcccC
Confidence            999999999986543

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A

Probab=99.76  E-value=3.5e-18  Score=139.94  Aligned_cols=105  Identities=23%  Similarity=0.404  Sum_probs=95.2

Q ss_pred             CcceEEEEEEEEeecCCC---CC-CCCCCcEEEEEEC---CEEEEeeeeeCCCCCeEeceEEEEeeCC-CceEEEEEEEc
Q 031185            3 QPFGQLKVTVVQGKRLVI---RD-FKSSDPYVVLKLG---NQMAKTKVINSCLNPVWNEEHSLSLTEP-VGVLSLEVFDK   74 (164)
Q Consensus         3 ~~~~~L~v~i~~a~~L~~---~~-~~~~dpyv~v~~~---~~~~~T~~~~~t~~P~w~e~~~f~~~~~-~~~L~v~v~d~   74 (164)
                      .+.+.|.|+|++|++|+.   .+ .+.+||||++++.   ...++|++++++.||.|||+|.|.+... ...|.|+|||+
T Consensus        15 ~~~g~L~V~Vi~A~nL~~~~~~D~~g~sDPYV~V~l~~~~~~k~kTkvik~tlNPvWNEtF~F~v~~~~~~~L~~~V~D~   94 (749)
T 1cjy_A           15 QYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDA   94 (749)
T ss_dssp             CCCEEEEEEEEEEECCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCBCEEEEEEC
T ss_pred             CCccEEEEEEEEEECCCCccccCCCCCcCeEEEEEEecCCCCeEecceEcCCCCCeeeeEEEEEecCCCCCEEEEEEEEC
Confidence            367899999999999998   77 7899999999997   4679999999999999999999999874 35899999999


Q ss_pred             CCCCCCCeeEEEEEeCcccccceeeeEEEEecCC
Q 031185           75 DRFKADDKMGKAYLNLQPIISAARLRHLVHVSSG  108 (164)
Q Consensus        75 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~  108 (164)
                      +.++ |++||++.++|.++..+.....|+.|...
T Consensus        95 D~~~-ddfIG~v~I~L~~L~~g~~~~~w~~L~~~  127 (749)
T 1cjy_A           95 NYVM-DETLGTATFTVSSMKVGEKKEVPFIFNQV  127 (749)
T ss_dssp             CSSS-CEEEEEECCBSTTSCTTCCCCEEEEETTT
T ss_pred             CCCC-CceeEEEEEEHHHcCCCCceEEEEecCCC
Confidence            9998 99999999999999988888899999865

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=99.74  E-value=4.6e-17  Score=120.36  Aligned_cols=90  Identities=29%  Similarity=0.447  Sum_probs=79.9

Q ss_pred             cceEEEEEEEEeecCCCCC-CCCCCcEEEEEEC--C---EEEEeeeeeCCCCCeEeceEEEEeeCCC---ceEEEEEEEc
Q 031185            4 PFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLG--N---QMAKTKVINSCLNPVWNEEHSLSLTEPV---GVLSLEVFDK   74 (164)
Q Consensus         4 ~~~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~--~---~~~~T~~~~~t~~P~w~e~~~f~~~~~~---~~L~v~v~d~   74 (164)
                      ..+.|.|.|++|++|+..+ .+.+||||++++.  +   ..++|++++++.||.|||+|.|.+....   ..|.|+|||+
T Consensus       148 ~~~~l~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~  227 (284)
T 2r83_A          148 TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDY  227 (284)
T ss_dssp             TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCTTTGGGEEEEEEEEEC
T ss_pred             cCCceEEEEEEeECCCCcCCCCCcCeEEEEEEEeCCcEeeeeccceecCCCCCEEceeEEEeCCHHHhCceEEEEEEEeC
Confidence            4578999999999999988 8899999999983  2   4589999999999999999999987653   3799999999


Q ss_pred             CCCCCCCeeEEEEEeCccc
Q 031185           75 DRFKADDKMGKAYLNLQPI   93 (164)
Q Consensus        75 ~~~~~d~~lG~~~i~l~~l   93 (164)
                      +.++++++||++.+++..+
T Consensus       228 d~~~~~~~iG~~~i~l~~~  246 (284)
T 2r83_A          228 DKIGKNDAIGKVFVGYNST  246 (284)
T ss_dssp             CSSSCCCEEEEEEEETTCC
T ss_pred             CCCCCCcEEEEEEECCCCC
Confidence            9999999999999999875

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A

Probab=99.74  E-value=1.4e-16  Score=128.99  Aligned_cols=94  Identities=22%  Similarity=0.379  Sum_probs=83.5

Q ss_pred             cceEEEEEEEEeecCCCCC---CCCCCcEEEEEECC-----EEEEeeeeeCC-CCCeEeceEEEEeeCCC-ceEEEEEEE
Q 031185            4 PFGQLKVTVVQGKRLVIRD---FKSSDPYVVLKLGN-----QMAKTKVINSC-LNPVWNEEHSLSLTEPV-GVLSLEVFD   73 (164)
Q Consensus         4 ~~~~L~v~i~~a~~L~~~~---~~~~dpyv~v~~~~-----~~~~T~~~~~t-~~P~w~e~~~f~~~~~~-~~L~v~v~d   73 (164)
                      ..+.|.|+|++|++|+..+   .+.+||||++.+.+     .+++|++++++ .||.|||+|.|.+..+. ..|.|+|||
T Consensus       495 ~~~~L~V~Vi~A~~L~~~d~~~~~~~DPYV~V~l~g~~~d~~~~kTkvi~~ng~NP~WnE~f~F~v~~~el~~L~~~V~D  574 (624)
T 1djx_A          495 RPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVED  574 (624)
T ss_dssp             CCEEEEEEEEEEESCCCCSSCSSSCCCEEEEEEEESSGGGCEEEECCCCTTCSSSCEEEEEEEEEESCGGGCEEEEEEEE
T ss_pred             cceEEEEEEEEcCCCCcccccccCCCCcEEEEEEecCCCCcceeecccccCCCCCCccCceEEEEEecCCCCEEEEEEEE
Confidence            4688999999999999887   47899999999933     67899999997 99999999999988664 489999999


Q ss_pred             cCCCCCCCeeEEEEEeCcccccce
Q 031185           74 KDRFKADDKMGKAYLNLQPIISAA   97 (164)
Q Consensus        74 ~~~~~~d~~lG~~~i~l~~l~~~~   97 (164)
                      ++.++++++||++.++|..+..+.
T Consensus       575 ~D~~~~dd~iG~~~ipl~~L~~G~  598 (624)
T 1djx_A          575 YDSSSKNDFIGQSTIPWNSLKQGY  598 (624)
T ss_dssp             CCSSSCCEEEEEEEEEGGGBCCEE
T ss_pred             cCCCCCCceeEEEEEEHHHcCCCc
Confidence            999999999999999999987654

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus}

Probab=99.66  E-value=8e-18  Score=132.94  Aligned_cols=100  Identities=16%  Similarity=0.206  Sum_probs=14.4

Q ss_pred             cceEEEEEEEEeecCCCCCCCCCCcEEEEEECCE-EEEeeeeeCC---CCCeEeceEEEEeeCCCceEEEEEEEc-C---
Q 031185            4 PFGQLKVTVVQGKRLVIRDFKSSDPYVVLKLGNQ-MAKTKVINSC---LNPVWNEEHSLSLTEPVGVLSLEVFDK-D---   75 (164)
Q Consensus         4 ~~~~L~v~i~~a~~L~~~~~~~~dpyv~v~~~~~-~~~T~~~~~t---~~P~w~e~~~f~~~~~~~~L~v~v~d~-~---   75 (164)
                      ..+.|+|+|++|++|+.++    ||||++++++. ..+|++++++   .||.|||+|.|.+......|.++|||. +   
T Consensus         9 ~~~~L~V~VieAk~L~~~d----dpYv~v~l~~~~~~kT~v~~kt~~glnP~WnE~F~f~~~~~~~~L~v~V~d~~d~~~   84 (483)
T 3bxj_A            9 VDNVLKLWIIEARELPPKK----RYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNLPAVRALRLHLYRDSDKKR   84 (483)
T ss_dssp             EEECC-------------------------------------------------CCEECC--------------------
T ss_pred             eccEEEEEEEEcCCcCCCC----CCeEEEEECCeEEeeeeEEeCCCCCCCCccccEEEEecCCCccEEEEEEEecCCccc
Confidence            4578999999999998765    99999999765 5799999998   999999999998655456899999994 4   


Q ss_pred             CCCCCCeeEEEEEeCcccccceeeeEEEEecC
Q 031185           76 RFKADDKMGKAYLNLQPIISAARLRHLVHVSS  107 (164)
Q Consensus        76 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~  107 (164)
                      ..++|++||.+.|++.++..+...+.|++|..
T Consensus        85 ~~~~d~~lG~v~i~l~~l~~~~~~~~W~~L~~  116 (483)
T 3bxj_A           85 KKDKAGYVGLVTVPVATLAGRHFTEQWYPVTL  116 (483)
T ss_dssp             ----------------------CCEECC----
T ss_pred             cCCCCceEEEEEEEHHHhcCCCCCCeEEECCC
Confidence            36789999999999999998878888888854

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=99.64  E-value=8.7e-17  Score=119.74  Aligned_cols=92  Identities=27%  Similarity=0.342  Sum_probs=81.3

Q ss_pred             cceEEEEEEEEeecCCCCC-CCCCCcEEEEEEC--C---EEEEeeeeeCCCCCeEeceEEEEeeCCC---ceEEEEEEEc
Q 031185            4 PFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLG--N---QMAKTKVINSCLNPVWNEEHSLSLTEPV---GVLSLEVFDK   74 (164)
Q Consensus         4 ~~~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~--~---~~~~T~~~~~t~~P~w~e~~~f~~~~~~---~~L~v~v~d~   74 (164)
                      ..+.|.|+|++|++|+.++ .+.+||||++++.  +   ..++|++++++.||.|||+|.|.+....   ..|.|+|||+
T Consensus       150 ~~~~l~v~v~~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~  229 (296)
T 1dqv_A          150 TAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDY  229 (296)
T ss_dssp             TTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCEEEEC
T ss_pred             ccceeEEEEEEeecCCccCCCCCCCcEEEEEEEeCCcCccceecceecCCCCCeECceEEEEcCHHHccCcEEEEEEEeC
Confidence            4578999999999999998 8889999999995  2   4689999999999999999999987643   3799999999


Q ss_pred             CCCCCCCeeEEEEEeCccccc
Q 031185           75 DRFKADDKMGKAYLNLQPIIS   95 (164)
Q Consensus        75 ~~~~~d~~lG~~~i~l~~l~~   95 (164)
                      +.++++++||.+.+++..+..
T Consensus       230 d~~~~~~~iG~~~i~l~~~~~  250 (296)
T 1dqv_A          230 DCIGHNEVIGVCRVGPEAADP  250 (296)
T ss_dssp             CSSSCCEEEEECCCSSCTTCH
T ss_pred             CCCCCCceEEEEEECCccCCc
Confidence            999999999999999987643

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=99.59  E-value=5.5e-15  Score=121.06  Aligned_cols=102  Identities=37%  Similarity=0.444  Sum_probs=89.3

Q ss_pred             ceEEEEEEEEeecCCCCC-CCCCCcEEEEEE-----CCEEEEeeeeeCCCCCeEeceEEEEeeCCC--ceEEEEEEEcCC
Q 031185            5 FGQLKVTVVQGKRLVIRD-FKSSDPYVVLKL-----GNQMAKTKVINSCLNPVWNEEHSLSLTEPV--GVLSLEVFDKDR   76 (164)
Q Consensus         5 ~~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~-----~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~--~~L~v~v~d~~~   76 (164)
                      .+.|.|++.+|++|+.++ .+.+|||+++++     ...+++|++++++.||.|||+|.|.+....  ..|.++|||++.
T Consensus       171 ~~~L~V~v~~a~~L~~~d~~g~sDPyvkv~l~p~~~~~~k~kT~v~~~tlnP~wne~f~f~~~~~~~~~~L~v~v~d~d~  250 (674)
T 3pfq_A          171 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRRLSVEIWDWDL  250 (674)
T ss_dssp             SSEEEEEEEEEESCCCCSTTSSCCEEEEEEEESCSSCCSCEECCCCSSCSSCEEEEEEEEECCSTTTTCEEEEEEEECCS
T ss_pred             cceeeeeeecccccCCCCcccccCcccccccccCccccccccccccccccCCCccceeeeecccCCccceeeeEEeeccc
Confidence            467899999999999999 899999999999     345689999999999999999999987543  379999999999


Q ss_pred             CCCCCeeEEEEEeCcccccceeeeEEEEecC
Q 031185           77 FKADDKMGKAYLNLQPIISAARLRHLVHVSS  107 (164)
Q Consensus        77 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~  107 (164)
                      +++|++||.+.+++.++..... ..|+.+..
T Consensus       251 ~~~dd~iG~~~i~l~~l~~~~~-~~w~~Lls  280 (674)
T 3pfq_A          251 TSRNDFMGSLSFGISELQKAGV-DGWFKLLS  280 (674)
T ss_dssp             SSCCEECCBCCCBTTHHHHCCE-EEEEECBC
T ss_pred             ccccccccccccchhhhccCCc-ccceeecc
Confidence            9999999999999999987654 67777643

>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A

Probab=99.47  E-value=3.1e-12  Score=105.97  Aligned_cols=88  Identities=19%  Similarity=0.367  Sum_probs=74.2

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCcEEEEEECC-------EEEEeeeeeC-CCCCeEece-EEEE-eeCCC-ceEEEEEEE
Q 031185            5 FGQLKVTVVQGKRLVIRDFKSSDPYVVLKLGN-------QMAKTKVINS-CLNPVWNEE-HSLS-LTEPV-GVLSLEVFD   73 (164)
Q Consensus         5 ~~~L~v~i~~a~~L~~~~~~~~dpyv~v~~~~-------~~~~T~~~~~-t~~P~w~e~-~~f~-~~~~~-~~L~v~v~d   73 (164)
                      .+.|.|+|++|++|+..   ..||||++.+.+       .+++|+++++ +.||.|||+ |.|. +..+. ..|.+.|||
T Consensus       649 ~~~L~V~Visaq~L~~~---~~DPYV~V~l~g~p~d~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~pela~Lrf~V~D  725 (816)
T 3qr0_A          649 AGTIEIKIISAQFLSDK---QISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDLAVVRIIVSE  725 (816)
T ss_dssp             CEEEEEEEEEEECCCSS---CCCEEEEEEEESSGGGCEEEEEECCCBCSCSSCCBCCCCCEEEEEESCGGGCEEEEEEEE
T ss_pred             ceEEEEEEEEcccCCCC---CCCCeEEEEEeCCCcccccceeeeEEecCCCCCCeEcCceeEEccccCCCccEEEEEEEe
Confidence            47899999999999753   689999999943       5689999886 699999998 9998 65543 389999999


Q ss_pred             cCCCCCCCeeEEEEEeCcccccceee
Q 031185           74 KDRFKADDKMGKAYLNLQPIISAARL   99 (164)
Q Consensus        74 ~~~~~~d~~lG~~~i~l~~l~~~~~~   99 (164)
                      ++    +++||++.++|..+..+.++
T Consensus       726 ~d----ddfiG~~~ipL~~L~~GyR~  747 (816)
T 3qr0_A          726 EN----GKFIGHRVMPLDGIKPGYRH  747 (816)
T ss_dssp             TT----SCEEEEEEEESTTCCCEEEE
T ss_pred             cC----CCeeeEEEEEHHHcCCcceE
Confidence            84    78999999999999887653

>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}

Probab=99.45  E-value=2.1e-12  Score=107.58  Aligned_cols=88  Identities=24%  Similarity=0.421  Sum_probs=72.7

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCcEEEEEECC------EEEEeeeeeC-CCCCeEec-eEEEE-eeCCC-ceEEEEEEEc
Q 031185            5 FGQLKVTVVQGKRLVIRDFKSSDPYVVLKLGN------QMAKTKVINS-CLNPVWNE-EHSLS-LTEPV-GVLSLEVFDK   74 (164)
Q Consensus         5 ~~~L~v~i~~a~~L~~~~~~~~dpyv~v~~~~------~~~~T~~~~~-t~~P~w~e-~~~f~-~~~~~-~~L~v~v~d~   74 (164)
                      ...|.|+|++|++|+..   ..||||++.+.+      .+++|+++.+ +.||.||| +|.|. +..+. ..|.++|||+
T Consensus       724 ~~~L~V~Visaq~L~~~---~~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~pela~Lrf~V~D~  800 (885)
T 3ohm_B          724 ANALRVKVISGQFLSDR---KVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLASLRIAAFEE  800 (885)
T ss_dssp             CEEEEEEEEEEESCCSS---CCCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCGGGCEEEEEEEET
T ss_pred             ceEEEEEEEEeccCccc---CCCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcCCcCEEEEEEEcC
Confidence            35799999999999853   689999999943      3478999876 69999999 69998 65443 3899999998


Q ss_pred             CCCCCCCeeEEEEEeCcccccceee
Q 031185           75 DRFKADDKMGKAYLNLQPIISAARL   99 (164)
Q Consensus        75 ~~~~~d~~lG~~~i~l~~l~~~~~~   99 (164)
                      +    +++||++.++|..+..+.++
T Consensus       801 d----ddfiG~~~lpL~~L~~GyR~  821 (885)
T 3ohm_B          801 G----GKFVGHRILPVSAIRSGYHY  821 (885)
T ss_dssp             T----TEEEEEEEEETTTCCCEEEE
T ss_pred             C----ccEEeeEEEEHHHcCCCceE
Confidence            6    78999999999998776543

>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B

Probab=99.42  E-value=4.3e-12  Score=105.30  Aligned_cols=88  Identities=24%  Similarity=0.389  Sum_probs=72.7

Q ss_pred             cceEEEEEEEEeecCCCCCCCCCCcEEEEEECC------EEEEee-eeeC-CCCCeEec-eEEE-EeeCCCc-eEEEEEE
Q 031185            4 PFGQLKVTVVQGKRLVIRDFKSSDPYVVLKLGN------QMAKTK-VINS-CLNPVWNE-EHSL-SLTEPVG-VLSLEVF   72 (164)
Q Consensus         4 ~~~~L~v~i~~a~~L~~~~~~~~dpyv~v~~~~------~~~~T~-~~~~-t~~P~w~e-~~~f-~~~~~~~-~L~v~v~   72 (164)
                      ..+.|.|+|++|++|+.   +..||||++.+.+      .+++|+ ++++ +.||.||| +|.| .+..+.. .|.+.||
T Consensus       676 ~~~~L~V~Visa~~L~~---~~~DPYV~V~l~g~p~d~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~el~~Lr~~V~  752 (799)
T 2zkm_X          676 VATTLSITVISGQFLSE---RSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVM  752 (799)
T ss_dssp             TCEEEEEEEEEEESCCS---SCCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEEE
T ss_pred             eeeeEEEEEEeccccCc---cCCCcEEEEEEEecCCCcccceeecccccCCCCCCeeecceEEEEEEccCCccEEEEEEE
Confidence            36789999999999985   4689999999932      357899 7765 69999999 6999 7765543 8999999


Q ss_pred             EcCCCCCCCeeEEEEEeCccccccee
Q 031185           73 DKDRFKADDKMGKAYLNLQPIISAAR   98 (164)
Q Consensus        73 d~~~~~~d~~lG~~~i~l~~l~~~~~   98 (164)
                      |++    +++||++.++|..+..+.+
T Consensus       753 D~d----~d~iG~~~ipl~~L~~G~r  774 (799)
T 2zkm_X          753 EEG----NKFLGHRIIPINALNSGYH  774 (799)
T ss_dssp             ETT----TEEEEEEEEEGGGBCCEEE
T ss_pred             EeC----CCccceEeeehhhcCCCcE
Confidence            986    7899999999998877643

>1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A

Probab=99.41  E-value=1.7e-11  Score=78.51  Aligned_cols=115  Identities=12%  Similarity=0.277  Sum_probs=85.0

Q ss_pred             cceEEEEEEEEeecCCCCC-CCCCCcEEEEEECCEE----EEe-eeeeCCCCCeEeceEEEEeeCCCceEEEEEEEcCCC
Q 031185            4 PFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGNQM----AKT-KVINSCLNPVWNEEHSLSLTEPVGVLSLEVFDKDRF   77 (164)
Q Consensus         4 ~~~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~~~~----~~T-~~~~~t~~P~w~e~~~f~~~~~~~~L~v~v~d~~~~   77 (164)
                      ...-|+|.+.++.--+.+. ....||||.+.++...    .+| ...++|..|.|+++|...+.+. ..|.+.|++... 
T Consensus         4 m~~flRi~~~~~~~~~~~~~~~~lDPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~V~~G-r~l~i~Vfh~a~-   81 (126)
T 1yrk_A            4 MAPFLRIAFNSYELGSLQAEDEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIYEG-RVIQIVLMRAAE-   81 (126)
T ss_dssp             CCCEEEEEEEEEECSSCCCSSSSCCCEEEEEEEEEEEETTEEEEECCSCCBCCCTTCEEEEECCTT-CEEEEEEEEETT-
T ss_pred             cCccEEeeeccccccccCCccccCCceEEEEeeeeEEcccceeecccCCCCCcCccceEEeeeeCC-EEEEEEEEcCCC-
Confidence            4566888887765422222 3468999999996544    254 6777799999999999998876 699999997765 


Q ss_pred             CCCCeeEEEEEeCcccccceeeeEEEEecCCceeeEEEeeCCCceeeccceEEEECCEEEeeeeEEEceeeeeeEEEEEE
Q 031185           78 KADDKMGKAYLNLQPIISAARLRHLVHVSSGETPLRKIIPDSENCLARESSIICINGEVVQNVWLRLCEVESGEIELKVK  157 (164)
Q Consensus        78 ~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~G~v~~~l~  157 (164)
                         +|++.++|.+.++......      .++                            ..+.|++|+  +.|+|++.++
T Consensus        82 ---~fvAn~tV~~edL~~~c~~------~~g----------------------------~~e~WvdLe--P~Gkl~~~i~  122 (126)
T 1yrk_A           82 ---EPVSEVTVGVSVLAERCKK------NNG----------------------------KAEFWLDLQ--PQAKVLMSVQ  122 (126)
T ss_dssp             ---EEEEEEEEEHHHHHHHHHT------TTT----------------------------EEEEEEECB--SSCEEEEEEE
T ss_pred             ---CeeeEEEEEHHHHHhhhcc------CCC----------------------------ceEEEEecc--cCcEEEEEEE
Confidence               8999999999999865211      011                            346677766  5799999999


Q ss_pred             EE
Q 031185          158 IV  159 (164)
Q Consensus       158 ~~  159 (164)
                      |.
T Consensus       123 ~~  124 (126)
T 1yrk_A          123 YF  124 (126)
T ss_dssp             EE
T ss_pred             Ee
Confidence            86

>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens}

Probab=99.35  E-value=3e-11  Score=78.39  Aligned_cols=89  Identities=11%  Similarity=0.178  Sum_probs=69.3

Q ss_pred             CcceEEEEEEEEeecCCCCC--CCCCCcEEEEEECCEE----EEe-eeeeCCCCCeEeceEEEEeeCCCceEEEEEEEcC
Q 031185            3 QPFGQLKVTVVQGKRLVIRD--FKSSDPYVVLKLGNQM----AKT-KVINSCLNPVWNEEHSLSLTEPVGVLSLEVFDKD   75 (164)
Q Consensus         3 ~~~~~L~v~i~~a~~L~~~~--~~~~dpyv~v~~~~~~----~~T-~~~~~t~~P~w~e~~~f~~~~~~~~L~v~v~d~~   75 (164)
                      ...+-|+|.+.++.--+.+.  ....||||.+.++...    .+| ...++|..|.|+++|...+.+. ..|.|.|++..
T Consensus         7 ~m~~flRi~l~~~~~~~~~~~~~~~lDPY~aV~VdE~~~te~gqtl~~KkkT~~P~Wne~Fd~~V~~G-r~l~i~Vfh~a   85 (138)
T 2enj_A            7 GMSPFLRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHINKG-RVMQIIVKGKN   85 (138)
T ss_dssp             SCCCCEEEEEEEEECCCCCCSCCCCCCCEEEEEEEEEEEETTEEEEEEEEEEECCCSSSEEEECCCSS-CEEEEEEECSS
T ss_pred             ccCcceEEEeeccccCCCCCcccccCCceEEEEeeeeeeccCceeecccCCCCCccccceEeeeEECC-eEEEEEEEcCC
Confidence            34566888887776543332  3468999999996542    566 6677799999999999998875 69999999765


Q ss_pred             CCCCCCeeEEEEEeCcccccc
Q 031185           76 RFKADDKMGKAYLNLQPIISA   96 (164)
Q Consensus        76 ~~~~d~~lG~~~i~l~~l~~~   96 (164)
                      .    +|++.++|.+.++...
T Consensus        86 ~----~fVAn~tV~~edL~~~  102 (138)
T 2enj_A           86 V----DLISETTVELYSLAER  102 (138)
T ss_dssp             C----SCCEEEEEESHHHHHH
T ss_pred             C----CeeeEEEEEHHHHHhh
Confidence            4    8999999999999865

>2yrb_A Protein fantom; beta sandwich, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=96.36  E-value=0.069  Score=35.50  Aligned_cols=94  Identities=12%  Similarity=0.130  Sum_probs=64.8

Q ss_pred             CCcceEEEEEEEEeecCCCCC--CCCCCcEEEEE--E-CCEEEEeeeeeCCCCCeEeceEEEEeeCCC--------ceEE
Q 031185            2 RQPFGQLKVTVVQGKRLVIRD--FKSSDPYVVLK--L-GNQMAKTKVINSCLNPVWNEEHSLSLTEPV--------GVLS   68 (164)
Q Consensus         2 ~~~~~~L~v~i~~a~~L~~~~--~~~~dpyv~v~--~-~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~--------~~L~   68 (164)
                      .+-.+.+.+.|.++.--+..-  .+..+|..-+.  + +-+.+.|.++. +.+|.++.+-.|.+....        ..+.
T Consensus        14 ~~gEnlfEihi~~~~~~~~~l~~~~d~~p~tF~t~dF~dfEtq~Tpv~~-G~~p~y~fts~Y~V~~d~~fl~yL~~~~l~   92 (156)
T 2yrb_A           14 ERGENLFEIHINKVTFSSEVLQASGDKEPVTFCTYAFYDFELQTTPVVR-GLHPEYNFTSQYLVHVNDLFLQYIQKNTIT   92 (156)
T ss_dssp             CSSCEEEEEEEEEECCCHHHHHHHCSSCCEEEEEECSTTCCCEECCCEE-SSSCCCCEEEEEEECCSHHHHHHHHHCCEE
T ss_pred             cCCCcEEEEEEeEEEEcHHHHhhccccCCcEEEEEEEeceEeeeccccc-CCCCCcceEEEEEEEeCHHHHHHHhcCCEE
Confidence            345788899999886311110  23456654444  4 44567777776 779999999999886542        2788


Q ss_pred             EEEEEcCCCCCCCeeEEEEEeCcccccce
Q 031185           69 LEVFDKDRFKADDKMGKAYLNLQPIISAA   97 (164)
Q Consensus        69 v~v~d~~~~~~d~~lG~~~i~l~~l~~~~   97 (164)
                      ++++..... .-..+|.++|++.++.+..
T Consensus        93 lELhqa~g~-~~~tla~~~I~l~~lLe~~  120 (156)
T 2yrb_A           93 LEVHQAYST-EYETIAACQLKFHEILEKS  120 (156)
T ss_dssp             EEEEEECSS-CEEEEEEEEECCSHHHHCC
T ss_pred             EEEEEeeCC-CceEEEEEEEEhHHhhCcC
Confidence            888886533 4468999999999988664

>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*

Probab=95.31  E-value=0.26  Score=41.95  Aligned_cols=88  Identities=19%  Similarity=0.324  Sum_probs=60.4

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCcEEEEEE--CCE----EEEeeeeeCCCCCeEeceEEEEeeCC----CceEEEEEEEc
Q 031185            5 FGQLKVTVVQGKRLVIRDFKSSDPYVVLKL--GNQ----MAKTKVINSCLNPVWNEEHSLSLTEP----VGVLSLEVFDK   74 (164)
Q Consensus         5 ~~~L~v~i~~a~~L~~~~~~~~dpyv~v~~--~~~----~~~T~~~~~t~~P~w~e~~~f~~~~~----~~~L~v~v~d~   74 (164)
                      ...+.|+|..+.++...  ...+-||.+.+  |++    ...|..+.-..+|.|||.+.|++.-.    ...|.++||+.
T Consensus       216 ~~~f~i~i~~~~~~~~~--~~~~~~V~~~l~~g~~~l~~~~~T~~~~~~~~~~Wne~l~f~i~i~dLPr~a~L~~ti~~~  293 (940)
T 2wxf_A          216 EQPFSIELIEGRKVNAD--ERMKLVVQAGLFHGNEMLCKTVSSSEVNVCSEPVWKQRLEFDISVCDLPRMARLCFALYAV  293 (940)
T ss_dssp             CSEEEEEEEEEECCCC-----CEEEEEEEEEETTEESSCCEECCCEESCSSCEEEEEEEEEEEGGGCCTTCEEEEEEEEE
T ss_pred             CCceEEEEEEecccCCC--CCceEEEEEEEEECCEEccCceecccccCCCCcccceEEEcccccccCCcccEEEEEEEEe
Confidence            45689999999998653  24567877766  543    35566666677899999999987632    23899999985


Q ss_pred             CCC--C----------CCCeeEEEEEeCcccc
Q 031185           75 DRF--K----------ADDKMGKAYLNLQPII   94 (164)
Q Consensus        75 ~~~--~----------~d~~lG~~~i~l~~l~   94 (164)
                      ...  +          .+..+|.+.+++-+..
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~lg~~~~~lFd~~  325 (940)
T 2wxf_A          294 VEKAKKARSTKKKSKKADCPIAWANLMLFDYK  325 (940)
T ss_dssp             C----------------CEEEEEEEEESBCTT
T ss_pred             cCCccCccccccccccccceEEEEeeeEECCc
Confidence            321  1          2348999999887644

>3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens}

Probab=95.09  E-value=0.55  Score=32.98  Aligned_cols=89  Identities=16%  Similarity=0.155  Sum_probs=59.0

Q ss_pred             cceEEEEEEEEeecCCCCCCCCCCcEEEEEE--C-C----------------EEEEeeeeeCCCCCeEeceEEEEeeCCC
Q 031185            4 PFGQLKVTVVQGKRLVIRDFKSSDPYVVLKL--G-N----------------QMAKTKVINSCLNPVWNEEHSLSLTEPV   64 (164)
Q Consensus         4 ~~~~L~v~i~~a~~L~~~~~~~~dpyv~v~~--~-~----------------~~~~T~~~~~t~~P~w~e~~~f~~~~~~   64 (164)
                      ..+.|.|++.++.--........+--|.+.+  . +                ..++|.+...+.+|.|+|++.+.++...
T Consensus        25 ~RNdLYVtl~~g~F~~~~k~~aRNIeV~vevr~~~G~~i~~~I~~~sg~~~~se~~S~V~YHnk~P~w~EtIKi~LP~~~  104 (220)
T 3l4c_A           25 VRNDIYVTLVQGDFDKGSKTTAKNVEVTVSVYDEDGKRLEHVIFPGAGDEAISEYKSVIYYQVKQPRWFETVKVAIPIED  104 (220)
T ss_dssp             -CEEEEEEEEEEECCCSSSSSCCCEEEEEEEEETTSCBCCSCEECTTCCSCBSCEECCCCTTCSSCCCCEEEEEEECTTS
T ss_pred             CcccEEEEeeEeEECCCCCCCcceEEEEEEEEcCCCCCcccCEEcCCCCCCceeEEEEEEEcCCCCCceEeEEEeeChhh
Confidence            5677889988885322111233455555554  0 0                2367888888899999999999988653


Q ss_pred             c---eEEEEEEEcCCC----CCCCeeEEEEEeCcc
Q 031185           65 G---VLSLEVFDKDRF----KADDKMGKAYLNLQP   92 (164)
Q Consensus        65 ~---~L~v~v~d~~~~----~~d~~lG~~~i~l~~   92 (164)
                      -   .|.+++++...-    ..+..+|.+.++|-.
T Consensus       105 ~~~~HLlFtFrH~S~~~k~dk~E~pfg~a~lPL~~  139 (220)
T 3l4c_A          105 VNRSHLRFTFRHRSSQDSKDKSEKIFALAFVKLMR  139 (220)
T ss_dssp             STTEEEEEEEEECCCCSSCCCCCCEEEEEEEESBC
T ss_pred             cCCeEEEEEEEEecccccccccCCeeEEEEEEccc
Confidence            2   888998875432    123578999999863

>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A

Probab=94.15  E-value=0.47  Score=40.99  Aligned_cols=90  Identities=18%  Similarity=0.267  Sum_probs=60.3

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCcEEEEEE--CCE----EEEeeeeeCCCCCeEeceEEEEeeCC----CceEEEEEEEc
Q 031185            5 FGQLKVTVVQGKRLVIRDFKSSDPYVVLKL--GNQ----MAKTKVINSCLNPVWNEEHSLSLTEP----VGVLSLEVFDK   74 (164)
Q Consensus         5 ~~~L~v~i~~a~~L~~~~~~~~dpyv~v~~--~~~----~~~T~~~~~t~~P~w~e~~~f~~~~~----~~~L~v~v~d~   74 (164)
                      ...+.|+|..+.++........+-||.+.+  |++    ...|+.+. ..+|.|||.+.|++.-.    ...|.++||+.
T Consensus       354 ~~~f~v~i~~~~~~n~~~~~~~~~~V~~~l~hG~~~L~~~~~T~~~~-~~~~~Wne~l~f~i~i~dLPr~arL~~tl~~~  432 (1091)
T 3hhm_A          354 NSALRIKILCATYVNVNIRDIDKIYVRTGIYHGGEPLCDNVNTQRVP-CSNPRWNEWLNYDIYIPDLPRAARLCLSICSV  432 (1091)
T ss_dssp             CSEEEEEEEEESCCCCCCSSCCCCCEEEEEESSSCSSCCEECCCCCC-TTSCEEEEEEEEEEEGGGCCTTCEEEEEECCC
T ss_pred             CCCEEEEEEEecCCCCCccccceEEEEEEEEECCEEccCceeccccC-CCCCCCCeeEEecCccccCChhcEEEEEEEEe
Confidence            356899999998875433334677888887  433    34454443 45778999999987632    23899999986


Q ss_pred             CCC----CCCCeeEEEEEeCccccc
Q 031185           75 DRF----KADDKMGKAYLNLQPIIS   95 (164)
Q Consensus        75 ~~~----~~d~~lG~~~i~l~~l~~   95 (164)
                      ...    ..+..+|.+.++|-+...
T Consensus       433 ~~~~~~~~~~~~lg~~n~~lfd~~~  457 (1091)
T 3hhm_A          433 KGRKGAKEEHCPLAWGNINLFDYTD  457 (1091)
T ss_dssp             CCCC-------CCEEEEEESBCTTC
T ss_pred             cCccCcccccceeEEeeeeeEccCC
Confidence            542    123579999999887543

>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}

Probab=86.42  E-value=1.4  Score=38.29  Aligned_cols=88  Identities=16%  Similarity=0.203  Sum_probs=56.1

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCcEEEEEE--CCEE----EEeeeeeCCCCCeEeceEEEEeeCCC----ceEEEEEEEc
Q 031185            5 FGQLKVTVVQGKRLVIRDFKSSDPYVVLKL--GNQM----AKTKVINSCLNPVWNEEHSLSLTEPV----GVLSLEVFDK   74 (164)
Q Consensus         5 ~~~L~v~i~~a~~L~~~~~~~~dpyv~v~~--~~~~----~~T~~~~~t~~P~w~e~~~f~~~~~~----~~L~v~v~d~   74 (164)
                      ...+.|+|..+.++...  ...+-||.+.+  |++.    ..|..+.-+.+|.|||.+.|++.-..    ..|.++||+.
T Consensus       352 ~~~f~i~i~~~~~~~~~--~~~~~~V~~~l~~g~~~L~~~~~T~~~~~~~~~~Wnewl~f~i~~~dLPr~a~L~~ti~~~  429 (1092)
T 2y3a_A          352 NNPFQITLVKGNKLNTE--ETVKVHVRAGLFHGTELLCKTVVSSEISGKNDHIWNEQLEFDINICDLPRMARLCFAVYAV  429 (1092)
T ss_dssp             CSEEEEEECCCCCCCCC--SSCCCCCBCCEEETTEESSCCCBCCCCCSSSCCCCCEEEEEEEESSSCCTTCEEEEECCCC
T ss_pred             CCCEEEEEEEeccCCCC--CCceEEEEEEEEECCEEccCceecccccCCCCCccceeEEeCCccccCChhcEEEEEEEEe
Confidence            35688999998887643  23466666544  5543    44555554778999999999876432    3899999985


Q ss_pred             CCC----------------------CCCCeeEEEEEeCcccc
Q 031185           75 DRF----------------------KADDKMGKAYLNLQPII   94 (164)
Q Consensus        75 ~~~----------------------~~d~~lG~~~i~l~~l~   94 (164)
                      ...                      +.+..+|.+.+++-+..
T Consensus       430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~lFd~~  471 (1092)
T 2y3a_A          430 LDKVKTKKSTKTINPSKYQTIRKAGKVHYPVAWVNTMVFDFK  471 (1092)
T ss_dssp             ------------------------------CCEEEEESBCTT
T ss_pred             cCccccccccccccccccccccccccccceeEEEeeeeECCc
Confidence            311                      01237888888887643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	164
d1wfja_	136	b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr	2e-19
d1a25a_	132	b.7.1.2 (A:) C2 domain from protein kinase c (beta	8e-17
d1rsya_	143	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	4e-16
d2bwqa1	125	b.7.1.2 (A:729-853) Regulating synaptic membrane e	5e-16
d2cjta1	128	b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no	1e-15
d2ep6a1	126	b.7.1.1 (A:92-217) Multiple C2 and transmembrane d	3e-15
d2nq3a1	133	b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc	4e-15
d1w15a_	138	b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi	2e-14
d1ugka_	138	b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens	6e-14
d1rlwa_	126	b.7.1.1 (A:) Domain from cytosolic phospholipase A	6e-12
d1uowa_	157	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	1e-11
d1qasa2	131	b.7.1.1 (A:626-756) PI-specific phospholipase C is	1e-11
d1gmia_	136	b.7.1.1 (A:) Domain from protein kinase C epsilon	2e-11
d2cm5a1	137	b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (	3e-11
d1dqva1	130	b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus	7e-11
d1rh8a_	142	b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax	9e-11
d1dqva2	145	b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus	3e-09
d1wfma_	138	b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapie	6e-08
d2zkmx2	122	b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human	7e-06
d1bdya_	123	b.7.1.1 (A:) Domain from protein kinase C delta {R	1e-05

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 77.1 bits (189), Expect = 2e-19
 Identities = 32/100 (32%), Positives = 47/100 (47%), Gaps = 2/100 (2%)

Query: 4   PFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGNQMAKTKVINSC-LNPVWNEEHSLSLT 61
           P G L+V +V  K L   D   + DPYV L    Q  K+ V       P WNE    +++
Sbjct: 8   PHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVS 67

Query: 62  EPVGVLSLEVFDKDRFKADDKMGKAYLNLQPIISAARLRH 101
           E    L  ++FDKD    DD +G+A + L+P+     +  
Sbjct: 68  EGTTELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPP 107

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 70.1 bits (171), Expect = 8e-17
 Identities = 39/115 (33%), Positives = 47/115 (40%), Gaps = 12/115 (10%)

Query: 6   GQLKVTVVQGKRLVIRDFKS-SDPYVVLKL-----GNQMAKTKVINSCLNPVWNEEHSLS 59
             L V V   K LV  D    SDPYV LKL          KTK I   LNP WNE     
Sbjct: 15  EVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQ 74

Query: 60  LTEPVG--VLSLEVFDKDRFKADDKMGKAYLNLQPIISAARLRH---LVHVSSGE 109
           L E      LS+E++D D    +D MG     +   +  A +     L+    GE
Sbjct: 75  LKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISE-LQKAGVDGWFKLLSQEEGE 128

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 69.0 bits (168), Expect = 4e-16
 Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 7/103 (6%)

Query: 6   GQLKVTVVQGKRLVIRD-FKSSDPYVVLKL---GNQMAKTKVINSCLNPVWNEEHSLSLT 61
            QL V ++Q   L   D   +SDPYV + L     +  +TKV    LNPV+NE+ +  + 
Sbjct: 34  NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVP 93

Query: 62  EPVG---VLSLEVFDKDRFKADDKMGKAYLNLQPIISAARLRH 101
                   L + V+D DRF   D +G+  + +  +        
Sbjct: 94  YSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEE 136

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.8 bits (165), Expect = 5e-16
 Identities = 22/102 (21%), Positives = 43/102 (42%), Gaps = 12/102 (11%)

Query: 6   GQLKVTVVQGKRLVIRDF-KSSDPYVVLKL-----GNQMAKTKVINSCLNPVWNEEHSLS 59
            QL VT++  K L  R+  +  +PYV +            +TK +   L P WN+    S
Sbjct: 14  HQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYS 73

Query: 60  LTEPVG----VLSLEVFDKDRFK--ADDKMGKAYLNLQPIIS 95
                     +L + ++D+ R +    + +G+  + L+  + 
Sbjct: 74  PVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALL 115

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 67.1 bits (163), Expect = 1e-15
 Identities = 25/128 (19%), Positives = 46/128 (35%), Gaps = 13/128 (10%)

Query: 6   GQLKVTVVQGKRLVIRDFKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEPVG 65
             L V V + K    ++    + YV LK+ N  + T  +     P W ++    +     
Sbjct: 2   SLLCVGVKKAKFDGAQE--KFNTYVTLKVQNVKSTTIAVRG-SQPSWEQDFMFEINRLDL 58

Query: 66  VLSLEVFDKDRFKADDKMGKAYLNLQPIISAAR--------LRHLVHVSSGETPLRKIIP 117
            L++EV++K     D  +G  ++ L+ I  +          L     ++  E    K  P
Sbjct: 59  GLTVEVWNKGLIW-DTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEICGTK-DP 116

Query: 118 DSENCLAR 125
                L  
Sbjct: 117 TFHRILLD 124

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.4 bits (161), Expect = 3e-15
 Identities = 33/112 (29%), Positives = 55/112 (49%), Gaps = 1/112 (0%)

Query: 3   QPFGQLKVTVVQGKRLVIRDFK-SSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLT 61
           +  G L+V V++   L+  DF   SDP+ +L+LGN   +T  +   LNP WN+  +  + 
Sbjct: 3   KDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIK 62

Query: 62  EPVGVLSLEVFDKDRFKADDKMGKAYLNLQPIISAARLRHLVHVSSGETPLR 113
           +   VL + VFD+D  K  D +GK  + L  I       +++     E   +
Sbjct: 63  DIHDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQPNCYVLKNKDLEQAFK 114

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.9 bits (160), Expect = 4e-15
 Identities = 21/91 (23%), Positives = 42/91 (46%), Gaps = 2/91 (2%)

Query: 6  GQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEPV 64
           QL++TV+  K    +  +    PYV + +  Q  KT+  N+  +P W +  ++ +T   
Sbjct: 6  SQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTPVS 65

Query: 65 GVLSLEVFDKDRFKADDKMGKAYLNLQPIIS 95
           +    V+     K+D  +G A L++   + 
Sbjct: 66 KL-HFRVWSHQTLKSDVLLGTAALDIYETLK 95

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 64.0 bits (155), Expect = 2e-14
 Identities = 22/95 (23%), Positives = 35/95 (36%), Gaps = 9/95 (9%)

Query: 6   GQLKVTVVQGKRLVIRDFKSS-DPYVVLKLGNQMA-----KTKVINSCLNPVWNEEHSLS 59
             L V V++ + L   D     DPYV + L +        KT V     N V+NE     
Sbjct: 15  NTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFD 74

Query: 60  LTEP---VGVLSLEVFDKDRFKADDKMGKAYLNLQ 91
           +         +   V D +R   ++ +G+  L   
Sbjct: 75  IPCESLEEISVEFLVLDSERGSRNEVIGRLVLGAT 109

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.8 bits (152), Expect = 6e-14
 Identities = 23/97 (23%), Positives = 40/97 (41%), Gaps = 9/97 (9%)

Query: 6   GQLKVTVVQGKRLVIRDFKS--SDPYVVLKL---GNQMAKTKVINSCLNPVWNEEHSLSL 60
               V + + + L   D +S  SDPY+ + +        KT+V+   L+P ++E  +   
Sbjct: 22  KAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYG 81

Query: 61  TEP----VGVLSLEVFDKDRFKADDKMGKAYLNLQPI 93
                     L   +   DRF  DD +G+  + L  I
Sbjct: 82  IPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGI 118

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.4 bits (138), Expect = 6e-12
 Identities = 24/115 (20%), Positives = 45/115 (39%), Gaps = 12/115 (10%)

Query: 6   GQLKVTVVQGKRLVIRDFK----SSDPYVVLKLG---NQMAKTKVINSCLNPVWNEEHSL 58
            +  V V++  ++    F     + DPYV L +    +   +T+  N+ +NPVWNE    
Sbjct: 3   HKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEF 62

Query: 59  SLTEPVG-VLSLEVFDKDRFKADDKMGKAYLNLQPIISAARLRH---LVHVSSGE 109
            L      VL + + D +    D+ +G A   +  +    +         V+   
Sbjct: 63  ILDPNQENVLEITLMDANYVM-DETLGTATFTVSSMKVGEKKEVPFIFNQVTEMV 116

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 57.5 bits (138), Expect = 1e-11
 Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 9/94 (9%)

Query: 6   GQLKVTVVQGKRLVIRDFKS-SDPYVVLKLGN-----QMAKTKVINSCLNPVWNEEHSLS 59
           G+L V +++ K L   D    SDPYV + L       +  KT +  + LNP +NE  S  
Sbjct: 25  GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 84

Query: 60  LTEP---VGVLSLEVFDKDRFKADDKMGKAYLNL 90
           +         + + V D D+   +D +GK ++  
Sbjct: 85  VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGY 118

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 56.7 bits (136), Expect = 1e-11
 Identities = 26/120 (21%), Positives = 51/120 (42%), Gaps = 10/120 (8%)

Query: 7   QLKVTVVQGKRLVIRD---FKSSDPYVV-----LKLGNQMAKTKVI-NSCLNPVWNEEHS 57
           +L+V ++ G++L   +       DP V+     +       +T VI N+  NP W+ E  
Sbjct: 5   RLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFE 64

Query: 58  LSLTEPVG-VLSLEVFDKDRFKADDKMGKAYLNLQPIISAARLRHLVHVSSGETPLRKII 116
             +T P   ++   V D D    +D +G++ +    +    R  HL+  +  + P   + 
Sbjct: 65  FEVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQGYRHVHLLSKNGDQHPSATLF 124

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

 Score = 56.1 bits (134), Expect = 2e-11
 Identities = 17/102 (16%), Positives = 37/102 (36%), Gaps = 14/102 (13%)

Query: 6   GQLKVTVVQGKRLVIRDFK------------SSDPYVVLKLGN-QMAKTKVINSCLNPVW 52
           G LK+ + +   L    +               DPY+ L + + ++ +T       +P W
Sbjct: 6   GLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAW 65

Query: 53  NEEHSLSLTEPVGVLSLEVFDKDRFKADDKMGKAYLNLQPII 94
           ++E    +     +  L VF       DD +    +  + ++
Sbjct: 66  HDEFVTDVCNGRKIE-LAVFHDAPIGYDDFVANCTIQFEELL 106

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 55.6 bits (133), Expect = 3e-11
 Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 9/93 (9%)

Query: 6   GQLKVTVVQGKRLVIRDFK-SSDPYVVLKLGN-----QMAKTKVINSCLNPVWNEEHSLS 59
           G L V +++   L   D    SDP+V L L          KT++    LNP +NEE    
Sbjct: 15  GGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYD 74

Query: 60  LTEP---VGVLSLEVFDKDRFKADDKMGKAYLN 89
           +         L + V+D D  K++D +G   L 
Sbjct: 75  IKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLG 107

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 130

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 54.6 bits (130), Expect = 7e-11
 Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 7/97 (7%)

Query: 6   GQLKVTVVQGKRLVIR-DFKSSDPYVV---LKLGNQMAKTKVINSCLNPVWNEEHSLSLT 61
            QL V ++Q   L  +     SDPYV    L    +  +TKV    LNP++NE    S+ 
Sbjct: 18  DQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVP 77

Query: 62  EPV---GVLSLEVFDKDRFKADDKMGKAYLNLQPIIS 95
                   L   V+D DRF   D +G+  L+    ++
Sbjct: 78  LAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELA 114

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 54.5 bits (130), Expect = 9e-11
 Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 19/112 (16%)

Query: 1   MRQPFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKL--------------GNQMAKTKVIN 45
           +    G L + ++Q + LV RD    SDP+V + L                   +TK + 
Sbjct: 13  INYDLGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQ 72

Query: 46  SCLNPVWNEEHSLSLTEPVG----VLSLEVFDKDRFKADDKMGKAYLNLQPI 93
             LNP WN+                L + V+D DRF ++D +G+  ++L   
Sbjct: 73  KSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSST 124

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 50.6 bits (120), Expect = 3e-09
 Identities = 25/102 (24%), Positives = 40/102 (39%), Gaps = 9/102 (8%)

Query: 6   GQLKVTVVQGKRLVIRDFKSS-DPYVVLKLGN-----QMAKTKVINSCLNPVWNEEHSLS 59
           G L VT+++   L   D     DPYV   L +     +  KT +  + LNP +NE     
Sbjct: 20  GLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFD 79

Query: 60  LTEPVG---VLSLEVFDKDRFKADDKMGKAYLNLQPIISAAR 98
           +         LS+ V D D    ++ +G   +  +      R
Sbjct: 80  VAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHGR 121

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.8 bits (110), Expect = 6e-08
 Identities = 23/103 (22%), Positives = 34/103 (33%), Gaps = 9/103 (8%)

Query: 6   GQLKVTVVQGKRLVIRDFKSSDPYVVLKLGNQ----MAKTKVINSCLNPVWNEEHSLSLT 61
            +L VT ++            D YV   + N+     A+T +    L+  W E   L L 
Sbjct: 26  AELFVTRLEAVTSNHDG--GCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLA 83

Query: 62  ---EPVGVLSLEVFDKDRFKADDKMGKAYLNLQPIISAARLRH 101
               P   L+L +   DRF      G+  L L           
Sbjct: 84  EEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQ 126

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (96), Expect = 7e-06
 Identities = 22/120 (18%), Positives = 43/120 (35%), Gaps = 18/120 (15%)

Query: 7   QLKVTVVQGKRLVIRDFKSSDPYVVLKLG--------NQMAKTKVINSCLNPVWNEEHSL 58
            L +TV+ G+ L     +S   YV ++L             K     + +NPVW EE  +
Sbjct: 2   TLSITVISGQFLS---ERSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFV 58

Query: 59  SLT---EPVGVLSLEVFDKDRFKADDKMGKAYLNLQPIISAARLRHLVHVSSGETPLRKI 115
                   +  L + V ++     +  +G   + +  + S      L   S+    +  +
Sbjct: 59  FEKILMPELASLRVAVMEEG----NKFLGHRIIPINALNSGYHHLCLHSESNMPLTMPAL 114

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 123

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.5 bits (94), Expect = 1e-05
 Identities = 10/87 (11%), Positives = 27/87 (31%), Gaps = 9/87 (10%)

Query: 3  QPFGQLKVTVVQGKRLVIRDF-KSSDPYVVLKLGNQM-----AKTKVINSCLNPVWNEEH 56
           PF  L+++    +   ++    +S P+  +K+   +              + P W    
Sbjct: 2  APF--LRISFNSYELGSLQAEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTF 59

Query: 57 SLSLTEPVGVLSLEVFDKDRFKADDKM 83
             + E   V+ + +         +  
Sbjct: 60 DAHIYEGR-VIQIVLMRAAEDPMSEVT 85

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	164
d2ep6a1	126	Multiple C2 and transmembrane domain-containing pr	99.95
d1wfja_	136	C2 domain protein At1g63220 {Thale cress (Arabidop	99.94
d1rlwa_	126	Domain from cytosolic phospholipase A2 {Human (Hom	99.92
d1gmia_	136	Domain from protein kinase C epsilon {Rat (Rattus	99.91
d2nq3a1	133	E3 ubiquitin-protein ligase Itchy {Human (Homo sap	99.91
d1a25a_	132	C2 domain from protein kinase c (beta) {Rat (Rattu	99.89
d1qasa2	131	PI-specific phospholipase C isozyme D1 (PLC-D1), C	99.87
d1rsya_	143	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.87
d2cjta1	128	Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId:	99.86
d1dqva1	130	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.86
d1rh8a_	142	Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}	99.85
d1ugka_	138	Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960	99.82
d1w15a_	138	Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId:	99.81
d1wfma_	138	Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9	99.81
d2bwqa1	125	Regulating synaptic membrane exocytosis protein, r	99.81
d1bdya_	123	Domain from protein kinase C delta {Rat (Rattus no	99.79
d2cm5a1	137	C2b-domain of rabphilin {Rat (Rattus norvegicus) [	99.79
d1uowa_	157	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.79
d1dqva2	145	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.71
d2zkmx2	122	Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI	99.6
d1e7ua2	174	Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa)	96.97
d2yrba1	142	Fantom {Human (Homo sapiens) [TaxId: 9606]}	92.16

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=4.5e-28  Score=158.12  Aligned_cols=95  Identities=33%  Similarity=0.535  Sum_probs=88.8

Q ss_pred             CcceEEEEEEEEeecCCCCC-CCCCCcEEEEEECCEEEEeeeeeCCCCCeEeceEEEEeeCCCceEEEEEEEcCCCCCCC
Q 031185            3 QPFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEPVGVLSLEVFDKDRFKADD   81 (164)
Q Consensus         3 ~~~~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~L~v~v~d~~~~~~d~   81 (164)
                      ++.|.|.|+|++|++|+.++ .|.+||||+++++++.++|++++++.||.|+|+|.|.+......|.++|||++.+++|+
T Consensus         3 ~~~G~L~V~v~~A~~L~~~d~~g~~Dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~v~~~~~~L~i~V~d~~~~~~d~   82 (126)
T d2ep6a1           3 KDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHDVLEVTVFDEDGDKPPD   82 (126)
T ss_dssp             CCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEESCTTCEEEEEEEEEETTEEEE
T ss_pred             CccEEEEEEEEEeECCCCCCCCCCcCeEEEEEcCCeEEEEEeeCCceeEEEEEEEEEEEeccCceeEEEEEEccCCcCcc
Confidence            46899999999999999998 88999999999999999999999999999999999999887779999999999998899


Q ss_pred             eeEEEEEeCcccccce
Q 031185           82 KMGKAYLNLQPIISAA   97 (164)
Q Consensus        82 ~lG~~~i~l~~l~~~~   97 (164)
                      +||++.++|.++..+.
T Consensus        83 ~lG~~~i~l~~l~~~~   98 (126)
T d2ep6a1          83 FLGKVAIPLLSIRDGQ   98 (126)
T ss_dssp             ECCBCEEEGGGCCSSC
T ss_pred             eEEEEEEEHHHCCCCC
Confidence            9999999999886654

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.94  E-value=4.8e-26  Score=150.22  Aligned_cols=95  Identities=34%  Similarity=0.536  Sum_probs=87.1

Q ss_pred             CCcceEEEEEEEEeecCCCCC-CCCCCcEEEEEECCEEEEeeeeeC-CCCCeEeceEEEEeeCCCceEEEEEEEcCCCCC
Q 031185            2 RQPFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGNQMAKTKVINS-CLNPVWNEEHSLSLTEPVGVLSLEVFDKDRFKA   79 (164)
Q Consensus         2 ~~~~~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~~~~~~T~~~~~-t~~P~w~e~~~f~~~~~~~~L~v~v~d~~~~~~   79 (164)
                      ..+.|+|.|+|++|++|+..+ .+.+||||++++++..++|+++.+ +.||.|||+|.|.+......|.|+|||++.+++
T Consensus         6 ~~p~G~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~t~~~~~~~~nP~Wne~f~f~v~~~~~~L~v~V~d~d~~~~   85 (136)
T d1wfja_           6 SGPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTTELKAKIFDKDVGTE   85 (136)
T ss_dssp             CCCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEESSCCEEEEEECCSSSCTT
T ss_pred             CCCcEEEEEEEEEeeCCCCCCCCCCCCccEEEEEeeeeEEEEEEecCCCcEEEeeEEEEEEcCccceEEEEEEEecCCCC
Confidence            357899999999999999999 899999999999999999999875 889999999999999876789999999999989


Q ss_pred             CCeeEEEEEeCcccccc
Q 031185           80 DDKMGKAYLNLQPIISA   96 (164)
Q Consensus        80 d~~lG~~~i~l~~l~~~   96 (164)
                      |++||++.|+|.++...
T Consensus        86 d~~iG~~~i~L~~l~~~  102 (136)
T d1wfja_          86 DDAVGEATIPLEPVFVE  102 (136)
T ss_dssp             TCCSEEEEEESHHHHHH
T ss_pred             CCEEEEEEEEhHHhccc
Confidence            99999999999987554

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=2.3e-24  Score=140.22  Aligned_cols=117  Identities=21%  Similarity=0.413  Sum_probs=98.9

Q ss_pred             ceEEEEEEEEeecCCCCC----CCCCCcEEEEEECC---EEEEeeeeeCCCCCeEeceEEEEeeCCCc-eEEEEEEEcCC
Q 031185            5 FGQLKVTVVQGKRLVIRD----FKSSDPYVVLKLGN---QMAKTKVINSCLNPVWNEEHSLSLTEPVG-VLSLEVFDKDR   76 (164)
Q Consensus         5 ~~~L~v~i~~a~~L~~~~----~~~~dpyv~v~~~~---~~~~T~~~~~t~~P~w~e~~~f~~~~~~~-~L~v~v~d~~~   76 (164)
                      .+.|+|+|++|+||+...    .+.+||||++.+++   +.++|+++.++.+|.|+|+|.|.+..... .|.++|||++.
T Consensus         2 s~~l~V~v~~a~~L~~~~~~d~~~~~Dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~f~i~~~~~~~L~v~V~d~d~   81 (126)
T d1rlwa_           2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY   81 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCS
T ss_pred             CcEEEEEEEEccCCCCccccccCCCCCcEEEEEECCcccceeEeeecCCCccceeceeeeecccCcccCcEEEEEEECCC
Confidence            478999999999998754    57899999999964   56899999999999999999999986654 89999999987


Q ss_pred             CCCCCeeEEEEEeCcccccceeeeEEEEecCCceeeEEEeeCCCceeeccceEEEECCEEEeeeeEEEceeeeeeEEEEE
Q 031185           77 FKADDKMGKAYLNLQPIISAARLRHLVHVSSGETPLRKIIPDSENCLARESSIICINGEVVQNVWLRLCEVESGEIELKV  156 (164)
Q Consensus        77 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~G~v~~~l  156 (164)
                      . +|++||.+.++|.++..+...                                       +.|++|....+|+|++++
T Consensus        82 ~-~d~~lG~~~i~L~~l~~~~~~---------------------------------------~~~~~L~~~~~g~i~~~l  121 (126)
T d1rlwa_          82 V-MDETLGTATFTVSSMKVGEKK---------------------------------------EVPFIFNQVTEMVLEMSL  121 (126)
T ss_dssp             S-CCEEEEEEEEEGGGSCTTCEE---------------------------------------EEEEEETTTEEEEEEEEE
T ss_pred             C-CCCeEEEEEEEHHHccCCCeE---------------------------------------EEEEEccCCCeEEEEEEE
Confidence            6 689999999999988655433                                       456777767789999999


Q ss_pred             EEEeC
Q 031185          157 KIVDA  161 (164)
Q Consensus       157 ~~~~~  161 (164)
                      ++.|.
T Consensus       122 ~~~~s  126 (126)
T d1rlwa_         122 EVASS  126 (126)
T ss_dssp             ECCCC
T ss_pred             EEEeC
Confidence            99763

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=99.91  E-value=9.9e-24  Score=138.97  Aligned_cols=123  Identities=17%  Similarity=0.319  Sum_probs=102.9

Q ss_pred             CCCcceEEEEEEEEeecCCCCC------------CCCCCcEEEEEECCEE-EEeeeeeCCCCCeEeceEEEEeeCCCceE
Q 031185            1 MRQPFGQLKVTVVQGKRLVIRD------------FKSSDPYVVLKLGNQM-AKTKVINSCLNPVWNEEHSLSLTEPVGVL   67 (164)
Q Consensus         1 ~~~~~~~L~v~i~~a~~L~~~~------------~~~~dpyv~v~~~~~~-~~T~~~~~t~~P~w~e~~~f~~~~~~~~L   67 (164)
                      |.-..|.|+|+|++|++|++.+            .+.+||||++++++.. .+|++..++.+|.|||+|.|.+... ..|
T Consensus         1 ~~~~~G~L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l~~~~~~~T~~~~~t~~P~Wne~f~f~v~~~-~~l   79 (136)
T d1gmia_           1 MVVFNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNG-RKI   79 (136)
T ss_dssp             CCCEEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEE-CEE
T ss_pred             CccEEEEEEEEEEEeECCCcccccccccccccCCCCCcCcEEEEEeCCCcCcEeeEEcCCCCccCccEEEEEEecC-Cce
Confidence            5567899999999999998642            4568999999998866 6899999999999999999999754 689


Q ss_pred             EEEEEEcCCCCCCCeeEEEEEeCcccccceeeeEEEEecCCceeeEEEeeCCCceeeccceEEEECCEEEeeeeEEEcee
Q 031185           68 SLEVFDKDRFKADDKMGKAYLNLQPIISAARLRHLVHVSSGETPLRKIIPDSENCLARESSIICINGEVVQNVWLRLCEV  147 (164)
Q Consensus        68 ~v~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  147 (164)
                      .|+|||++.+++|++||.+.|+|.++......                                     ..+.|++|+  
T Consensus        80 ~i~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~-------------------------------------~~~~w~~L~--  120 (136)
T d1gmia_          80 ELAVFHDAPIGYDDFVANCTIQFEELLQNGSR-------------------------------------HFEDWIDLE--  120 (136)
T ss_dssp             EEEEEECCSSSSCEEEEEEEEEHHHHTSTTCS-------------------------------------EEEEEEECB--
T ss_pred             EEEEEEecCCCCceeEEEEEEEHHHhhhcCCc-------------------------------------ceeEEEeCC--
Confidence            99999999998999999999999988655321                                     235677775  


Q ss_pred             eeeeEEEEEEEEeCCC
Q 031185          148 ESGEIELKVKIVDAPS  163 (164)
Q Consensus       148 ~~G~v~~~l~~~~~~~  163 (164)
                      +.|+|++++++.+.+|
T Consensus       121 p~G~v~l~v~~~~~~g  136 (136)
T d1gmia_         121 PEGKVYVIIDLSGSSG  136 (136)
T ss_dssp             SSCEEEEEEEEEEEEC
T ss_pred             CCcEEEEEEEEEeCCC
Confidence            5799999999988654

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=2.8e-23  Score=136.23  Aligned_cols=92  Identities=24%  Similarity=0.386  Sum_probs=83.9

Q ss_pred             cceEEEEEEEEeecCCCCC-CCCCCcEEEEEECCEEEEeeeeeCCCCCeEeceEEEEeeCCCceEEEEEEEcCCCCCCCe
Q 031185            4 PFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEPVGVLSLEVFDKDRFKADDK   82 (164)
Q Consensus         4 ~~~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~L~v~v~d~~~~~~d~~   82 (164)
                      ..++|.|+|++|++++..+ .+.+||||++.++++.++|++++++.||.|||.|.|.+... ..|.|+|||++.+++|++
T Consensus         4 ~~~~L~v~v~~A~~~~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~-~~l~~~V~d~d~~~~d~~   82 (133)
T d2nq3a1           4 MKSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTPV-SKLHFRVWSHQTLKSDVL   82 (133)
T ss_dssp             CCEEEEEEEEEEEECCCC--CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEECTT-CEEEEEEEECCSSSCCEE
T ss_pred             cceEEEEEEEEeECCCcCCCCCCcCeEEEEEECCeEEeeEEEEecccEEEcceEEEEEEec-ceeEEEEEEccCCCCCce
Confidence            4589999999999999888 88899999999999999999999999999999999998764 689999999999999999


Q ss_pred             eEEEEEeCcccccc
Q 031185           83 MGKAYLNLQPIISA   96 (164)
Q Consensus        83 lG~~~i~l~~l~~~   96 (164)
                      ||++.++|.++...
T Consensus        83 iG~~~i~L~~l~~~   96 (133)
T d2nq3a1          83 LGTAALDIYETLKS   96 (133)
T ss_dssp             EEEEEEEHHHHHHH
T ss_pred             EEEEEEEHHHhhhh
Confidence            99999999987554

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.89  E-value=1.5e-22  Score=132.65  Aligned_cols=102  Identities=36%  Similarity=0.445  Sum_probs=87.7

Q ss_pred             ceEEEEEEEEeecCCCCC-CCCCCcEEEEEE-----CCEEEEeeeeeCCCCCeEeceEEEEeeCCC--ceEEEEEEEcCC
Q 031185            5 FGQLKVTVVQGKRLVIRD-FKSSDPYVVLKL-----GNQMAKTKVINSCLNPVWNEEHSLSLTEPV--GVLSLEVFDKDR   76 (164)
Q Consensus         5 ~~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~-----~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~--~~L~v~v~d~~~   76 (164)
                      .+.|.|+|++|+||+.++ .+.+||||++++     ...+++|++++++.||.|||+|.|.+....  ..|.|+|||++.
T Consensus        14 ~~~L~V~V~~a~~L~~~d~~g~~DpYv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~   93 (132)
T d1a25a_          14 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDL   93 (132)
T ss_dssp             SSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECCS
T ss_pred             CCEEEEEEEeeeCCCCCCCCCCcCeEEEEEEccCCCCccccEEeeecCCCCCccceEEEEEeEccccCCEEeEEEEecCC
Confidence            478999999999999998 889999999998     445689999999999999999999987643  379999999999


Q ss_pred             CCCCCeeEEEEEeCcccccceeeeEEEEecC
Q 031185           77 FKADDKMGKAYLNLQPIISAARLRHLVHVSS  107 (164)
Q Consensus        77 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~  107 (164)
                      +++|++||.+.|++.++..+ ..+.|++|.+
T Consensus        94 ~~~d~~iG~~~i~l~~l~~~-~~~~W~~L~~  123 (132)
T d1a25a_          94 TSRNDFMGSLSFGISELQKA-GVDGWFKLLS  123 (132)
T ss_dssp             SSCCEEEEEEEEEHHHHTTC-CEEEEEECBC
T ss_pred             CCCCcEeEEEEEeHHHcCCC-CCCeEEECCC
Confidence            99999999999999988654 3456666643

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.87  E-value=1.1e-20  Score=123.47  Aligned_cols=92  Identities=23%  Similarity=0.392  Sum_probs=77.3

Q ss_pred             eEEEEEEEEeecCCCCC---CCCCCcEEEEEE-----CCEEEEeeeeeC-CCCCeEeceEEEEeeCCCc-eEEEEEEEcC
Q 031185            6 GQLKVTVVQGKRLVIRD---FKSSDPYVVLKL-----GNQMAKTKVINS-CLNPVWNEEHSLSLTEPVG-VLSLEVFDKD   75 (164)
Q Consensus         6 ~~L~v~i~~a~~L~~~~---~~~~dpyv~v~~-----~~~~~~T~~~~~-t~~P~w~e~~~f~~~~~~~-~L~v~v~d~~   75 (164)
                      ..|+|+|++|++|+..+   .+.+||||++++     +..+++|+++++ +.||.|+|+|.|.+..... .|.++|||++
T Consensus         4 ~~l~V~Vi~a~~L~~~~~~~~~~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wne~f~f~~~~~~~~~L~~~V~D~d   83 (131)
T d1qasa2           4 ERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVEDYD   83 (131)
T ss_dssp             EEEEEEEEEEESCCCCC-----CCCEEEEEEEESSTTTCEEEECCCCSSCSSSCEEEEEEEEEESCGGGCEEEEEEEECC
T ss_pred             EEEEEEEEEeeCCCCCCCCCCCCcCeEEEEEEccCCCCcEEEEEEEEecccCCceEEEEEEEEEEcchhceEEEEEEEec
Confidence            57999999999997544   678999999998     357789998766 5799999999998876543 7999999999


Q ss_pred             CCCCCCeeEEEEEeCcccccce
Q 031185           76 RFKADDKMGKAYLNLQPIISAA   97 (164)
Q Consensus        76 ~~~~d~~lG~~~i~l~~l~~~~   97 (164)
                      .+++|++||++.++|..+..+.
T Consensus        84 ~~~~d~~iG~~~i~l~~l~~g~  105 (131)
T d1qasa2          84 SSSKNDFIGQSTIPWNSLKQGY  105 (131)
T ss_dssp             TTTCCEEEEEEEEEGGGBCCEE
T ss_pred             CCCCCcEEEEEEEEEeccCCCC
Confidence            9989999999999999886653

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.87  E-value=7.3e-22  Score=130.96  Aligned_cols=103  Identities=28%  Similarity=0.368  Sum_probs=90.3

Q ss_pred             cceEEEEEEEEeecCCCCC-CCCCCcEEEEEE---CCEEEEeeeeeCCCCCeEeceEEEEeeCC---CceEEEEEEEcCC
Q 031185            4 PFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKL---GNQMAKTKVINSCLNPVWNEEHSLSLTEP---VGVLSLEVFDKDR   76 (164)
Q Consensus         4 ~~~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~---~~~~~~T~~~~~t~~P~w~e~~~f~~~~~---~~~L~v~v~d~~~   76 (164)
                      ..+.|.|+|++|+||+.++ .+.+||||++++   +...++|++++++.+|.|||+|.|.+...   ...|.|+|||++.
T Consensus        32 ~~~~L~V~V~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~kT~~~~~t~~P~wne~f~f~i~~~~l~~~~L~i~V~d~d~  111 (143)
T d1rsya_          32 QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDR  111 (143)
T ss_dssp             TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCS
T ss_pred             CCCEEEEEEEEccCCCCCCCCCCCCeEEEEEEcCCCCeeEEEEEeccccCcceeeeeEEEEEeeccCCceEEEEEEEcCC
Confidence            4568999999999999988 889999999998   45568999999999999999999987643   2489999999999


Q ss_pred             CCCCCeeEEEEEeCcccccceeeeEEEEec
Q 031185           77 FKADDKMGKAYLNLQPIISAARLRHLVHVS  106 (164)
Q Consensus        77 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~  106 (164)
                      ++++++||.+.|+|.++..+.....|++|.
T Consensus       112 ~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~  141 (143)
T d1rsya_         112 FSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ  141 (143)
T ss_dssp             SSCCEEEEEEEEEGGGCCCSSCEEEEEECB
T ss_pred             CCCCcEEEEEEEEchhccCCCCCccEEeCC
Confidence            989999999999999998777777787775

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.86  E-value=3.8e-21  Score=124.86  Aligned_cols=100  Identities=21%  Similarity=0.302  Sum_probs=85.9

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCcEEEEEECCEEEEeeeeeCCCCCeEeceEEEEeeCCCceEEEEEEEcCCCCCCCeeE
Q 031185            5 FGQLKVTVVQGKRLVIRDFKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEPVGVLSLEVFDKDRFKADDKMG   84 (164)
Q Consensus         5 ~~~L~v~i~~a~~L~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~L~v~v~d~~~~~~d~~lG   84 (164)
                      ++.|.|+|.+|++|..++  ..||||.+++++.+.+|.++++ .||.|+|.|.|.+..+...|.++|||++.. +|++||
T Consensus         1 ~~~L~V~v~~a~~l~~~~--~~dpYv~l~~~~~k~~T~~~k~-~nP~Wne~f~f~v~~~~~~L~v~V~d~~~~-~d~~lG   76 (128)
T d2cjta1           1 MSLLCVGVKKAKFDGAQE--KFNTYVTLKVQNVKSTTIAVRG-SQPSWEQDFMFEINRLDLGLTVEVWNKGLI-WDTMVG   76 (128)
T ss_dssp             CEEEEEEEEEEECSSCGG--GCEEEEEEEETTEEEECCCEES-SSCEEEEEEEEEECCCSSEEEEEEEECCSS-CEEEEE
T ss_pred             CeEEEEEEEEEECCCCCC--CcCeEEEEEeCCEEEEEEEecC-CCCeEEEEEEEeeccccceEEEEEEeCCCc-CCcceE
Confidence            468999999999998865  6799999999999999999875 599999999999998878999999999887 689999


Q ss_pred             EEEEeCcccccce--eeeEEEEecCC
Q 031185           85 KAYLNLQPIISAA--RLRHLVHVSSG  108 (164)
Q Consensus        85 ~~~i~l~~l~~~~--~~~~~~~l~~~  108 (164)
                      ++.|+|+++....  ....|+.|...
T Consensus        77 ~~~I~L~~l~~~~~~~~~~W~~L~~~  102 (128)
T d2cjta1          77 TVWIPLRTIRQSNEEGPGEWLTLDSQ  102 (128)
T ss_dssp             EEEEEGGGSCBCSSCCCCEEEECBC-
T ss_pred             EEEEEehhhccCCCCCCCeeEECCcc
Confidence            9999999987543  34567777543

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.86  E-value=2.5e-21  Score=126.39  Aligned_cols=106  Identities=29%  Similarity=0.370  Sum_probs=86.9

Q ss_pred             CcceEEEEEEEEeecCCCCC-CCCCCcEEEEEE---CCEEEEeeeeeCCCCCeEeceEEEEeeCCC---ceEEEEEEEcC
Q 031185            3 QPFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKL---GNQMAKTKVINSCLNPVWNEEHSLSLTEPV---GVLSLEVFDKD   75 (164)
Q Consensus         3 ~~~~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~---~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~---~~L~v~v~d~~   75 (164)
                      ...+.|.|+|++|+||+..+ .+.+||||++++   ....++|++++++.+|.|+|+|.|.+....   ..|.|+|||++
T Consensus        15 ~~~~~L~V~V~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~~~~~~L~v~V~d~~   94 (130)
T d1dqva1          15 YGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFD   94 (130)
T ss_dssp             SSSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEECC
T ss_pred             CCCCEEEEEEEeeeCCccccCCCCcceEEEEEEccCCCceEeceeEcCCCCeeeeeEEEEEEchHHcCCCeEEEEEEEcC
Confidence            46789999999999999988 889999999998   345689999999999999999999986542   37999999999


Q ss_pred             CCCCCCeeEEEEEeCcccc-cc-eeeeEEEEecCC
Q 031185           76 RFKADDKMGKAYLNLQPII-SA-ARLRHLVHVSSG  108 (164)
Q Consensus        76 ~~~~d~~lG~~~i~l~~l~-~~-~~~~~~~~l~~~  108 (164)
                      .+++|++||.+.|++.... .. .....|++|.++
T Consensus        95 ~~~~d~~iG~~~i~~~~~l~~~~~~~~~W~~L~~~  129 (130)
T d1dqva1          95 RFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEG  129 (130)
T ss_dssp             SSSCCCEEEEEECCCTTGGGSSCSSCCCCEECBCC
T ss_pred             CCCCCceEEEEEECchhhhhcCCCCCcEEEecccC
Confidence            9999999999999865432 22 233457776654

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.85  E-value=1.4e-22  Score=134.26  Aligned_cols=104  Identities=27%  Similarity=0.424  Sum_probs=88.8

Q ss_pred             ceEEEEEEEEeecCCCCC-CCCCCcEEEEEECC--------------EEEEeeeeeCCCCCeEeceEEEEeeCC----Cc
Q 031185            5 FGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGN--------------QMAKTKVINSCLNPVWNEEHSLSLTEP----VG   65 (164)
Q Consensus         5 ~~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~~--------------~~~~T~~~~~t~~P~w~e~~~f~~~~~----~~   65 (164)
                      .|.|.|+|++|+||+.++ .+.+||||++++..              .+++|++++++.||.|||+|.|.....    ..
T Consensus        17 ~~~L~V~V~~A~~L~~~d~~g~~DpyV~v~l~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~   96 (142)
T d1rh8a_          17 LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKK   96 (142)
T ss_dssp             TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTC
T ss_pred             CCEEEEEEEEeECCCCcCCCCCCCcCEEEEEecCcccccccccCCCceeeeccCCcCCCCceeEEEEEEeeecccccCCC
Confidence            478999999999999998 88999999999832              125788888999999999999974432    23


Q ss_pred             eEEEEEEEcCCCCCCCeeEEEEEeCcccccceeeeEEEEecCC
Q 031185           66 VLSLEVFDKDRFKADDKMGKAYLNLQPIISAARLRHLVHVSSG  108 (164)
Q Consensus        66 ~L~v~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~  108 (164)
                      .|.|+|||++.+++|++||++.|+|.++........|+.|.+.
T Consensus        97 ~L~i~V~d~d~~~~~~~lG~~~i~L~~l~~~~~~~~W~~L~~~  139 (142)
T d1rh8a_          97 TLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKEQ  139 (142)
T ss_dssp             EEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEEEECBCC
T ss_pred             EEEEEEEEecCCCCCeeeEEEEEEhHHcCCCCCceEEEECcCc
Confidence            8999999999998999999999999999888777888888754

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.5e-19  Score=118.88  Aligned_cols=92  Identities=24%  Similarity=0.394  Sum_probs=78.6

Q ss_pred             cceEEEEEEEEeecCCCCC-CC-CCCcEEEEEE---CCEEEEeeeeeCCCCCeEeceEEEEe-eCC---CceEEEEEEEc
Q 031185            4 PFGQLKVTVVQGKRLVIRD-FK-SSDPYVVLKL---GNQMAKTKVINSCLNPVWNEEHSLSL-TEP---VGVLSLEVFDK   74 (164)
Q Consensus         4 ~~~~L~v~i~~a~~L~~~~-~~-~~dpyv~v~~---~~~~~~T~~~~~t~~P~w~e~~~f~~-~~~---~~~L~v~v~d~   74 (164)
                      ..+.|.|+|++|+||+.++ .+ .+||||++.+   ....++|++++++.||.|||+|.|.. ...   ...|.|+|||.
T Consensus        20 ~~~~L~V~V~~a~~L~~~d~~~~~~dpyV~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~L~~~V~d~   99 (138)
T d1ugka_          20 ERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSF   99 (138)
T ss_dssp             GGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEEEE
T ss_pred             CCCEEEEEEEEecCCCCCCCCCCccceEEEEEEcCCCCEeEeCeeEeCCCCCceeeEEEEeeeCHHHcccceEEEEEEEC
Confidence            4568999999999999887 44 5799999999   45678999999999999999999974 332   12799999999


Q ss_pred             CCCCCCCeeEEEEEeCccccc
Q 031185           75 DRFKADDKMGKAYLNLQPIIS   95 (164)
Q Consensus        75 ~~~~~d~~lG~~~i~l~~l~~   95 (164)
                      +.++++++||++.++|.++..
T Consensus       100 d~~~~~~~iG~~~i~L~~~~~  120 (138)
T d1ugka_         100 DRFSRDDIIGEVLIPLSGIEL  120 (138)
T ss_dssp             CSSCCCCCCEEEEEECTTCCC
T ss_pred             CCCCCCcEEEEEEEEcccccC
Confidence            999899999999999998853

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.81  E-value=2.5e-19  Score=117.89  Aligned_cols=91  Identities=25%  Similarity=0.305  Sum_probs=74.4

Q ss_pred             cceEEEEEEEEeecCCCCC-CCCCCcEEEEEE--CC---EEEEeeeeeCCCCCeEeceEEEEeeCCC---ceEEEEEEEc
Q 031185            4 PFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKL--GN---QMAKTKVINSCLNPVWNEEHSLSLTEPV---GVLSLEVFDK   74 (164)
Q Consensus         4 ~~~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~--~~---~~~~T~~~~~t~~P~w~e~~~f~~~~~~---~~L~v~v~d~   74 (164)
                      ..+.|.|+|++|+||+..+ .+.+||||++++  +.   .+++|++++++.+|.|||+|.|.+....   ..|.|+|||.
T Consensus        13 ~~~~L~V~v~~a~~L~~~~~~~~~dpyvkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~i~v~d~   92 (138)
T d1w15a_          13 TTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDS   92 (138)
T ss_dssp             TTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEEEEC
T ss_pred             CCCEEEEEEEEeECCCCCCCCCCcCEEEEEEEeCCcccCccccceeECCCCCCeECcEEEEEecHHHhCccEEEEEEEeC
Confidence            4578999999999999988 888999999998  32   3468999999999999999999986543   2799999999


Q ss_pred             CCCCCCCeeEEEEEeCcccc
Q 031185           75 DRFKADDKMGKAYLNLQPII   94 (164)
Q Consensus        75 ~~~~~d~~lG~~~i~l~~l~   94 (164)
                      +.++++++||++.+++....
T Consensus        93 ~~~~~~~~iG~~~i~l~~~~  112 (138)
T d1w15a_          93 ERGSRNEVIGRLVLGATAEG  112 (138)
T ss_dssp             CTTSCCEEEEEEEESTTCCS
T ss_pred             CCCCCCCEEEEEEEcchhCC
Confidence            99989999999999998643

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=1.5e-19  Score=119.02  Aligned_cols=103  Identities=21%  Similarity=0.202  Sum_probs=87.4

Q ss_pred             cceEEEEEEEEeecCCCCCCCCCCcEEEEEEC----CEEEEeeeeeCCCCCeEeceEEEEeeCCC---ceEEEEEEEcCC
Q 031185            4 PFGQLKVTVVQGKRLVIRDFKSSDPYVVLKLG----NQMAKTKVINSCLNPVWNEEHSLSLTEPV---GVLSLEVFDKDR   76 (164)
Q Consensus         4 ~~~~L~v~i~~a~~L~~~~~~~~dpyv~v~~~----~~~~~T~~~~~t~~P~w~e~~~f~~~~~~---~~L~v~v~d~~~   76 (164)
                      ..+.|.|+|++|++|+.  .+.+||||++.+.    ...++|++++++.+|.|+|+|.|.+....   ..|.|+|||++.
T Consensus        24 ~~~~L~V~v~~a~~L~~--~g~~dpyVkv~l~~~~~~~~~kT~v~~~~~~P~wne~f~f~v~~~~l~~~~L~~~V~d~~~  101 (138)
T d1wfma_          24 QKAELFVTRLEAVTSNH--DGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDR  101 (138)
T ss_dssp             TTTEEEEEEEEEECCCC--SSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEECCS
T ss_pred             CCCEEEEEEEEcCCCCC--CCCcCcEEEEEECCCCCccceeeeEECCCCCceEeeeEEEEeeehhccceEEEEEEeeecc
Confidence            46789999999999954  3578999999993    23478999999999999999999987542   389999999999


Q ss_pred             CCCCCeeEEEEEeCcccccceeeeEEEEecCC
Q 031185           77 FKADDKMGKAYLNLQPIISAARLRHLVHVSSG  108 (164)
Q Consensus        77 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~  108 (164)
                      ++++++||++.|+|.++......+.|+.|...
T Consensus       102 ~~~~~~iG~~~i~L~~l~~~~~~~~W~~L~~~  133 (138)
T d1wfma_         102 FSRHSVAGELRLGLDGTSVPLGAAQWGELKTS  133 (138)
T ss_dssp             SCTTSCSEEEEEESSSSSSCTTCCEEEECCCC
T ss_pred             cccceeeeEEEEEhHHccCCCCceEeEeCCCC
Confidence            99999999999999999777777778777643

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=1.5e-19  Score=117.04  Aligned_cols=102  Identities=23%  Similarity=0.428  Sum_probs=79.7

Q ss_pred             CcceEEEEEEEEeecCCCCC-CCCCCcEEEEEE-----CCEEEEeeeeeCCCCCeEeceEEEE-eeCC---CceEEEEEE
Q 031185            3 QPFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKL-----GNQMAKTKVINSCLNPVWNEEHSLS-LTEP---VGVLSLEVF   72 (164)
Q Consensus         3 ~~~~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~-----~~~~~~T~~~~~t~~P~w~e~~~f~-~~~~---~~~L~v~v~   72 (164)
                      ...+.|.|+|++|+||+..+ .+.+||||++.+     ....++|++++++.+|.|||+|.|. +...   ...|.|+||
T Consensus        11 ~~~~~L~V~V~~a~~L~~~~~~~~~dpyVkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~f~~~~~~~l~~~~L~i~v~   90 (125)
T d2bwqa1          11 KVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLW   90 (125)
T ss_dssp             TTTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEEE
T ss_pred             CCCCEEEEEEEEeECCCCcCCCCCCCEEEEEEEeCCCCCccccccCEEcCCCCCEEccEEEEeeeChhhcCCCEEEEEEE
Confidence            34678999999999999888 889999999998     2345899999999999999999997 4432   237999999


Q ss_pred             EcCCCC--CCCeeEEEEEeCcccccceeeeEEEEe
Q 031185           73 DKDRFK--ADDKMGKAYLNLQPIISAARLRHLVHV  105 (164)
Q Consensus        73 d~~~~~--~d~~lG~~~i~l~~l~~~~~~~~~~~l  105 (164)
                      |.+.++  ++++||++.++|+++..... ..||+|
T Consensus        91 d~~~~~~~~~~~iG~~~i~l~~~~~~~~-~~Wy~L  124 (125)
T d2bwqa1          91 DQARVREEESEFLGEILIELETALLDDE-PHWYKL  124 (125)
T ss_dssp             EC-------CEEEEEEEEEGGGCCCSSC-EEEEEC
T ss_pred             ECCCCCCCCCeeEEEEEEEchhcCCCCC-CEEEeC
Confidence            999764  45699999999998876543 346665

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.79  E-value=2.7e-19  Score=115.39  Aligned_cols=111  Identities=13%  Similarity=0.228  Sum_probs=84.0

Q ss_pred             EEEEEEEeecCCCCCCCCCCcEEEEEECCE-----EEEeeeeeCCCCCeEeceEEEEeeCCCceEEEEEEEcCCCCCCCe
Q 031185            8 LKVTVVQGKRLVIRDFKSSDPYVVLKLGNQ-----MAKTKVINSCLNPVWNEEHSLSLTEPVGVLSLEVFDKDRFKADDK   82 (164)
Q Consensus         8 L~v~i~~a~~L~~~~~~~~dpyv~v~~~~~-----~~~T~~~~~t~~P~w~e~~~f~~~~~~~~L~v~v~d~~~~~~d~~   82 (164)
                      +.|.+..+..++.. .+.+||||.+++.+.     ..+|.+.++|+||.|||+|.|.+... ..|.|.|||++    +++
T Consensus         7 ~~~~~~~~~~~~~~-~~~~dPY~~v~l~~~~~~~~~~~t~~~kkT~nP~WnE~F~~~v~~~-~~l~i~V~d~d----d~~   80 (123)
T d1bdya_           7 ISFNSYELGSLQAE-DDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYEG-RVIQIVLMRAA----EDP   80 (123)
T ss_dssp             EEEEEEECCTTCCC-CCSCCCEEEEEEEEECCGGGTTBEEECSCCBCCCTTCEEEEECCTT-CEEEEEEEEET----TEE
T ss_pred             EEEEEeecccCCCC-CCCCCCEEEEEEcCccccccceEEEEeCCCCCcccceEEEEEEccc-cEEEEEEEEcc----ccc
Confidence            34444443333222 688999999999442     36788889999999999999999764 68999999975    679


Q ss_pred             eEEEEEeCcccccceeeeEEEEecCCceeeEEEeeCCCceeeccceEEEECCEEEeeeeEEEceeeeeeEEEEEEEEe
Q 031185           83 MGKAYLNLQPIISAARLRHLVHVSSGETPLRKIIPDSENCLARESSIICINGEVVQNVWLRLCEVESGEIELKVKIVD  160 (164)
Q Consensus        83 lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~G~v~~~l~~~~  160 (164)
                      +|.+.+.+..+....       ...+                           ...+.|++|+  ++|+|++.++|..
T Consensus        81 ~g~~~i~l~~l~~~~-------~~~~---------------------------~~~~~W~~L~--~~Gkl~l~v~~f~  122 (123)
T d1bdya_          81 MSEVTVGVSVLAERC-------KKNN---------------------------GKAEFWLDLQ--PQAKVLMCVQYFL  122 (123)
T ss_dssp             EEEEEEEHHHHHHHH-------HTTT---------------------------TEEEEEEECB--SSCEEEEEEEEEE
T ss_pred             cCccEEehhheeecc-------ccCC---------------------------CcccEEEeCC--CCEEEEEEEEEec
Confidence            999999999886642       2222                           2456888886  6899999999975

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.79  E-value=8e-19  Score=115.15  Aligned_cols=101  Identities=29%  Similarity=0.364  Sum_probs=84.2

Q ss_pred             CcceEEEEEEEEeecCCCCC-CCCCCcEEEEEE-----CCEEEEeeeeeCCCCCeEeceEEEEeeCCC---ceEEEEEEE
Q 031185            3 QPFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKL-----GNQMAKTKVINSCLNPVWNEEHSLSLTEPV---GVLSLEVFD   73 (164)
Q Consensus         3 ~~~~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~-----~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~---~~L~v~v~d   73 (164)
                      +..+.|.|+|++|+||+..+ .+.+||||++++     ...+++|++++++.+|.|||+|.|.+....   ..|.+.||+
T Consensus        12 ~~~~~L~V~v~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~v~v~~   91 (137)
T d2cm5a1          12 TQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWD   91 (137)
T ss_dssp             TTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEE
T ss_pred             CCCCEEEEEEEEEECCCCCCCCCCcCeEEEEEEEcCCccceeecCEeEcCCCCCccceEEEEEeEHHHccccEEEEEeee
Confidence            45678999999999999888 888999999998     234578999999999999999999987542   389999999


Q ss_pred             cCCCCCCCeeEEEEEeCcccccceeeeEEEEe
Q 031185           74 KDRFKADDKMGKAYLNLQPIISAARLRHLVHV  105 (164)
Q Consensus        74 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l  105 (164)
                      .+.++++++||++.+++..+...  ...|+.+
T Consensus        92 ~~~~~~~~~iG~~~i~l~~~~~~--~~~W~~l  121 (137)
T d2cm5a1          92 YDIGKSNDYIGGCQLGISAKGER--LKHWYEC  121 (137)
T ss_dssp             CCSSSCCEEEEEEEEETTCCHHH--HHHHHHH
T ss_pred             CCCCCCCCEEEEEEeCccccCcc--hhhhhhH
Confidence            99999999999999999876443  2345544

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.79  E-value=1.6e-18  Score=116.31  Aligned_cols=90  Identities=29%  Similarity=0.447  Sum_probs=79.0

Q ss_pred             cceEEEEEEEEeecCCCCC-CCCCCcEEEEEEC--C---EEEEeeeeeCCCCCeEeceEEEEeeCCC---ceEEEEEEEc
Q 031185            4 PFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLG--N---QMAKTKVINSCLNPVWNEEHSLSLTEPV---GVLSLEVFDK   74 (164)
Q Consensus         4 ~~~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~--~---~~~~T~~~~~t~~P~w~e~~~f~~~~~~---~~L~v~v~d~   74 (164)
                      ..+.|.|+|++|+||+..+ .+.+||||++++.  +   ..++|++.+++.||.|||+|.|.+....   ..|.++|||.
T Consensus        23 ~~~~L~V~V~~a~~L~~~~~~~~~dpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~F~v~~~~l~~~~l~i~v~d~  102 (157)
T d1uowa_          23 TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDY  102 (157)
T ss_dssp             TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEEC
T ss_pred             CCCEEEEEEEEEEEcccccCCCCCCeeEEEEEecCCccccceecccccCCCCcccCCeEEEEecHHHcCccEEEEEEccc
Confidence            4578999999999999888 8899999999983  2   2368999999999999999999987653   3899999999


Q ss_pred             CCCCCCCeeEEEEEeCccc
Q 031185           75 DRFKADDKMGKAYLNLQPI   93 (164)
Q Consensus        75 ~~~~~d~~lG~~~i~l~~l   93 (164)
                      +.++++++||++.|++...
T Consensus       103 ~~~~~~~~iG~~~i~l~~~  121 (157)
T d1uowa_         103 DKIGKNDAIGKVFVGYNST  121 (157)
T ss_dssp             CSSSCCCEEEEEEEETTCC
T ss_pred             CCCCCCceeEEEEEecccC
Confidence            9999999999999999764

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.71  E-value=2.7e-18  Score=113.74  Aligned_cols=103  Identities=25%  Similarity=0.317  Sum_probs=85.0

Q ss_pred             CcceEEEEEEEEeecCCCCC-CCCCCcEEEEEECC-----EEEEeeeeeCCCCCeEeceEEEEeeCCC---ceEEEEEEE
Q 031185            3 QPFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGN-----QMAKTKVINSCLNPVWNEEHSLSLTEPV---GVLSLEVFD   73 (164)
Q Consensus         3 ~~~~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~~-----~~~~T~~~~~t~~P~w~e~~~f~~~~~~---~~L~v~v~d   73 (164)
                      +..|.|.|+|++|+||+..+ .+.+||||++++..     .+++|++++++.||.|||.|.|.+....   ..|.|.|||
T Consensus        17 ~~~~~L~V~V~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~v~v~d   96 (145)
T d1dqva2          17 PTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVD   96 (145)
T ss_dssp             TTTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCEEEE
T ss_pred             CCCCEEEEEEEEEeCCCCcCCCCCcCceEEEEEccCCccceeecCEEEeCCCCceecceEEEEEehhhcCCCEEEEEEEe
Confidence            35689999999999999888 78899999999843     2478999999999999999999876532   379999999


Q ss_pred             cCCCCCCCeeEEEEEeCcccccceeeeEEEEec
Q 031185           74 KDRFKADDKMGKAYLNLQPIISAARLRHLVHVS  106 (164)
Q Consensus        74 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~  106 (164)
                      .+.++++++||++.|+++.+.... ..+|+++.
T Consensus        97 ~~~~~~~~~iG~~~i~l~~~~~~~-~~~W~~l~  128 (145)
T d1dqva2          97 YDCIGHNEVIGVCRVGPEAADPHG-REHWAEML  128 (145)
T ss_dssp             CCSSSCCEEEEECCCSSCTTCHHH-HHHHHTSS
T ss_pred             cCCCCCCcEEEEEEECchHcCchh-hHHHHHHH
Confidence            999999999999999998765432 34565543

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=5.7e-14  Score=89.85  Aligned_cols=86  Identities=27%  Similarity=0.466  Sum_probs=65.8

Q ss_pred             EEEEEEEEeecCCCCCCCCCCcEEEEEEC------CEEEEeee--eeCCCCCeEece-EEEE-eeCCC-ceEEEEEEEcC
Q 031185            7 QLKVTVVQGKRLVIRDFKSSDPYVVLKLG------NQMAKTKV--INSCLNPVWNEE-HSLS-LTEPV-GVLSLEVFDKD   75 (164)
Q Consensus         7 ~L~v~i~~a~~L~~~~~~~~dpyv~v~~~------~~~~~T~~--~~~t~~P~w~e~-~~f~-~~~~~-~~L~v~v~d~~   75 (164)
                      +|.|+|++|++|+..   ..||||++++.      ..+.+|++  ..++.||.|||+ |.|. +..+. ..|.+.|||++
T Consensus         2 tl~V~Visaq~L~~~---~~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~~~~~~~l~~L~f~V~D~d   78 (122)
T d2zkmx2           2 TLSITVISGQFLSER---SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVMEEG   78 (122)
T ss_dssp             EEEEEEEEEESCCSS---CCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEEEETT
T ss_pred             EEEEEEEEeeCCCCC---CCCcEEEEEEECcCCCCCccEEEEEEEeCCeecceEcccEeEEEecCCCcccEEEEEEECCC
Confidence            689999999999864   57999999982      23344444  466899999976 4443 44333 28999999975


Q ss_pred             CCCCCCeeEEEEEeCcccccceee
Q 031185           76 RFKADDKMGKAYLNLQPIISAARL   99 (164)
Q Consensus        76 ~~~~d~~lG~~~i~l~~l~~~~~~   99 (164)
                          |++||++.++++.+..+.++
T Consensus        79 ----~~~lG~~~ipl~~l~~GyR~   98 (122)
T d2zkmx2          79 ----NKFLGHRIIPINALNSGYHH   98 (122)
T ss_dssp             ----TEEEEEEEEEGGGBCCEEEE
T ss_pred             ----CCEEEEEEEEcccCcCCceE
Confidence                78999999999999887654

>d2yrba1 b.7.1.1 (A:596-737) Fantom {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Fantom
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.16  E-value=0.15  Score=31.69  Aligned_cols=94  Identities=11%  Similarity=0.113  Sum_probs=63.6

Q ss_pred             CCcceEEEEEEEEeecCCCC-C-CC--CCCcEEEEEECCE-EEEeeeeeCCCCCeEeceEEEEeeCCC--------ceEE
Q 031185            2 RQPFGQLKVTVVQGKRLVIR-D-FK--SSDPYVVLKLGNQ-MAKTKVINSCLNPVWNEEHSLSLTEPV--------GVLS   68 (164)
Q Consensus         2 ~~~~~~L~v~i~~a~~L~~~-~-~~--~~dpyv~v~~~~~-~~~T~~~~~t~~P~w~e~~~f~~~~~~--------~~L~   68 (164)
                      +.-.+.+.+.|.++.--+.. . .+  .+..||.+.+-+. .+.|.++ .+.+|.+|.+..|.+....        ..+.
T Consensus         6 ~~gEnlfEihi~~~~~s~e~l~~~~d~~p~tF~T~~Fyd~Etq~TPv~-~g~~p~ynfts~Y~V~~d~~fl~YL~~~~~~   84 (142)
T d2yrba1           6 ERGENLFEIHINKVTFSSEVLQASGDKEPVTFCTYAFYDFELQTTPVV-RGLHPEYNFTSQYLVHVNDLFLQYIQKNTIT   84 (142)
T ss_dssp             CSSCEEEEEEEEEECCCHHHHHHHCSSCCEEEEEECSTTCCCEECCCE-ESSSCCCCEEEEEEECCSHHHHHHHHHCCEE
T ss_pred             cCCCcEEEEEEeeEEEcHHHHhhccCCCCcEEEEEEEEeeeeecCcee-cCCCCcceeEEEEEEccCHHHHHHHhhCCEE
Confidence            45567888888887321111 0 12  3445777777444 4555555 5668999999999887653        2789


Q ss_pred             EEEEEcCCCCCCCeeEEEEEeCcccccce
Q 031185           69 LEVFDKDRFKADDKMGKAYLNLQPIISAA   97 (164)
Q Consensus        69 v~v~d~~~~~~d~~lG~~~i~l~~l~~~~   97 (164)
                      +++|..... .-..++.+.|.+.++.+..
T Consensus        85 lelhqa~g~-~~~tvA~g~i~l~~lLd~~  112 (142)
T d2yrba1          85 LEVHQAYST-EYETIAACQLKFHEILEKS  112 (142)
T ss_dssp             EEEEEECSS-CEEEEEEEEECCSHHHHCC
T ss_pred             EEEEeecCC-CcceeEEEEEEhhHhhCcc
Confidence            999987643 3357999999999988753