Citrus Sinensis ID: 031204

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160----
Protein Sequence
MENLMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQLKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRNVEVGEVKIQLEWIDIPGSRGL
Secondary Structure (PSIPRED)
cccccEEEEEEEEEccccccccccccccEEEEEEccEEEcEEEEcccccccccEEEEEEEcccccEEEEEEEcccccccccccEEEEEcHHHHHHHHHHHcccccccEEEEEEEcccccccccccEEEEccEEEEEEEEEEccEEEEEEEEEEEEEEccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEEEEEEEEccEcEEccccccccEEEEEEcccEEEEEEccccccccccEEEEEEccccccEEEEEEEccccccccccccEEEcHHHHHHHHHcccccccccEEEEEEEEccccccccccEEEEEccEEEEEEEEEEEEccccEEEEEEEEEEccccccc
Coil and Loop (DISEMBL)
MENLMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQLKTRVVKnnvnpewnedltlsisdsnlpikltvydkdtfslddkmgdaefYITPFLEALKMRleglpngtivtkiqpsrenclaeeshivwtdgkLVQNLFLRLRnvevgevkiqlewidipgsrgl
Flexible Loop (DISEMBL)
MENLMGLLRVHVLRGVNLavrdvvssdpyvvikmgkqlktrvvknnvnpewnedltlsisdsnlpiKLTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRnvevgevkiqlewidipgsrgl
Low Complexity Region (SEG)
MENLMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQLKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRNVEVGEVKIQLEWIDIPGSRGL
Disordered region (IsUnstruct)
***LMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQLKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRNVEVGEVKIQLEWIDI******
Disordered Region (DISOPRED)
**NLMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQLKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRNVEVGEVKIQLEWIDIPG****
Disordered Region (DISEMBL)
MENLMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQLKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRNVEVGEVKIQLEWIDIPGSRGL
Disordered Region (DISPRO)
*ENLMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQLKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRNVEVGEVKIQLEWIDIPG****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MENLMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQLKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRNVEVGEVKIQLEWIDIPGSRGL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	164	2.2.26 [Sep-21-2011]
Q8L7A4	385	Probable ADP-ribosylation	no	no	0.939	0.4	0.475	3e-33
Q8LFN9	336	Probable ADP-ribosylation	no	no	0.951	0.464	0.436	6e-30
Q9FVJ3	337	ADP-ribosylation factor G	no	no	0.951	0.462	0.424	6e-29
Q9ZVT9	1020	C2 and GRAM domain-contai	no	no	0.652	0.104	0.330	1e-09
Q7XA06	540	Synaptotagmin-3 OS=Arabid	no	no	0.481	0.146	0.411	5e-08
Q6DN12	878	Multiple C2 and transmemb	no	no	0.475	0.088	0.426	6e-08
Q28BX9	1014	C2 domain-containing prot	no	no	0.536	0.086	0.347	9e-08
Q5RJH2	878	Multiple C2 and transmemb	yes	no	0.475	0.088	0.426	1e-07
Q6DN14	999	Multiple C2 and transmemb	no	no	0.481	0.079	0.382	2e-07
Q5RBF2	959	E3 ubiquitin-protein liga	no	no	0.487	0.083	0.314	3e-07

>sp|Q8L7A4|AGD11_ARATH Probable ADP-ribosylation factor GTPase-activating protein AGD11 OS=Arabidopsis thaliana GN=AGD11 PE=2 SV=1

 Score =  140 bits (354), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 78/164 (47%), Positives = 111/164 (67%), Gaps = 10/164 (6%)

Query: 1   MENLMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQ-LKTRVVKNNVNPEWNEDLTLSI 59
           M   +GL++V+V++G NLAVRDV++SDPYV++ +G+Q +KTRV+KNN+NP WNE L LSI
Sbjct: 224 MVEFVGLIKVNVVKGTNLAVRDVMTSDPYVILALGQQSVKTRVIKNNLNPVWNETLMLSI 283

Query: 60  SDSNLPIKLTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQ-----P 114
            +   P+K+ VYDKDTFS DD MG+AE  I P + A K         +I   +Q      
Sbjct: 284 PEPMPPLKVLVYDKDTFSTDDFMGEAEIDIQPLVSAAK----AYETSSIKEPMQLGSWVA 339

Query: 115 SRENCLAEESHIVWTDGKLVQNLFLRLRNVEVGEVKIQLEWIDI 158
           S+EN L  +  I+  DGK+ Q++ LRL+NVE G ++IQLE + +
Sbjct: 340 SKENTLVSDGIILLEDGKVKQDISLRLQNVERGVLEIQLECLPL 383

GTPase-activating protein (GAP) for ADP ribosylation factor (ARF).
Arabidopsis thaliana (taxid: 3702)

>sp|Q8LFN9|AGD13_ARATH Probable ADP-ribosylation factor GTPase-activating protein AGD13 OS=Arabidopsis thaliana GN=AGD13 PE=2 SV=1

 Score =  129 bits (325), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 69/158 (43%), Positives = 107/158 (67%), Gaps = 2/158 (1%)

Query: 1   MENLMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQ-LKTRVVKNNVNPEWNEDLTLSI 59
           M   +GLL+V + +G NLA+RD++SSDPYVV+ +GKQ L+T V+ +N+NP WN++L LS+
Sbjct: 175 MVEFIGLLKVTIKKGTNLAIRDMMSSDPYVVLNLGKQKLQTTVMNSNLNPVWNQELMLSV 234

Query: 60  SDSNLPIKLTVYDKDTFSLDDKMGDAEFYITPFL-EALKMRLEGLPNGTIVTKIQPSREN 118
            +S  P+KL VYD DTFS DD MG+A+  I P +  A+      +     + K   S +N
Sbjct: 235 PESYGPVKLQVYDYDTFSADDIMGEADIDIQPLITSAMAFGDPEMFGDMQIGKWLKSHDN 294

Query: 119 CLAEESHIVWTDGKLVQNLFLRLRNVEVGEVKIQLEWI 156
            L ++S I   DGK+ Q + ++L+NVE GE+++++EW+
Sbjct: 295 PLIDDSIINIVDGKVKQEVQIKLQNVESGELELEMEWL 332

GTPase-activating protein (GAP) for ADP ribosylation factor (ARF).

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FVJ3|AGD12_ARATH ADP-ribosylation factor GTPase-activating protein AGD12 OS=Arabidopsis thaliana GN=AGD12 PE=1 SV=1

 Score =  126 bits (317), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 67/158 (42%), Positives = 105/158 (66%), Gaps = 2/158 (1%)

Query: 1   MENLMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQ-LKTRVVKNNVNPEWNEDLTLSI 59
           M   +GLL+V + +G N+A+RD++SSDPYVV+ +G+Q  ++ VVK+N+NP WNE+L LS+
Sbjct: 176 MVEFIGLLKVTIKKGTNMAIRDMMSSDPYVVLTLGQQKAQSTVVKSNLNPVWNEELMLSV 235

Query: 60  SDSNLPIKLTVYDKDTFSLDDKMGDAEFYITPFL-EALKMRLEGLPNGTIVTKIQPSREN 118
             +   +KL V+D DTFS DD MG+AE  I P +  A+      +     + K   S +N
Sbjct: 236 PHNYGSVKLQVFDYDTFSADDIMGEAEIDIQPLITSAMAFGDPEMFGDMQIGKWLKSHDN 295

Query: 119 CLAEESHIVWTDGKLVQNLFLRLRNVEVGEVKIQLEWI 156
            L E+S I   DGK+ Q + ++L+NVE GE+++++EW+
Sbjct: 296 ALIEDSIINIADGKVKQEVQIKLQNVESGELELEMEWL 333

GTPase-activating protein (GAP) for ADP ribosylation factor (ARF). Binds phosphatidylinositol 3-monophosohate (PI-3-P) and anionic phospholipids.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZVT9|C2GR1_ARATH C2 and GRAM domain-containing protein At1g03370 OS=Arabidopsis thaliana GN=At1g03370 PE=2 SV=4

 Score = 62.4 bits (150), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 65/118 (55%), Gaps = 11/118 (9%)

Query: 8   LRVHVLRGVNLAVRDVVS-SDPYVVIKMGKQL-KTRVVKNNVNPEWNEDLTLSISDSNLP 65
           L+V V+   NL   D+   SDPYV +++GKQ  +T+VVK N+NP+W ED +  + D N  
Sbjct: 3   LQVRVVEARNLPAMDLNGFSDPYVRLQLGKQRSRTKVVKKNLNPKWTEDFSFGVDDLNDE 62

Query: 66  IKLTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQP----SRENC 119
           + ++V D+D +  DD +G     ++   +A    L     GT+   + P    S+++C
Sbjct: 63  LVVSVLDEDKYFNDDFVGQVRVSVSLVFDAENQSL-----GTVWYPLNPKKKGSKKDC 115

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XA06|SYT3_ARATH Synaptotagmin-3 OS=Arabidopsis thaliana GN=SYT3 PE=2 SV=1

 Score = 57.4 bits (137), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 35/85 (41%), Positives = 53/85 (62%), Gaps = 6/85 (7%)

Query: 5   MGLLRVHVLRGVNLAVRDVV-SSDPYVVIKM-GKQL---KTRVVKNNVNPEWNEDLTLSI 59
           +GLL V +LR  NL  +D++ +SDPYV + + G++L   KT + K N+NPEWNE   L +
Sbjct: 260 VGLLHVSILRARNLLKKDLLGTSDPYVKLSLTGEKLPAKKTTIKKRNLNPEWNEHFKLIV 319

Query: 60  SDSNLPI-KLTVYDKDTFSLDDKMG 83
            D N  + +L V+D D     D++G
Sbjct: 320 KDPNSQVLQLEVFDWDKVGGHDRLG 344

May be involved in membrane trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6DN12|MCTP2_HUMAN Multiple C2 and transmembrane domain-containing protein 2 OS=Homo sapiens GN=MCTP2 PE=1 SV=3

 Score = 57.0 bits (136), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 51/82 (62%), Gaps = 4/82 (4%)

Query: 7   LLRVHVLRGVNLAVRDVV-SSDPYVVIKM-GKQL-KTRVVKNNVNPEWNEDLTLSISDSN 63
           LL +H+  G NL VRD   +SDPYV  K+ GK L K++V+  N+NP W+E + L I   +
Sbjct: 195 LLTIHLKEGRNLVVRDRCGTSDPYVKFKLNGKTLYKSKVIYKNLNPVWDEIVVLPIQSLD 254

Query: 64  LPIKLTVYDKDTFSLDDKMGDA 85
             +++ VYD+D  +  D MG A
Sbjct: 255 QKLRVKVYDRD-LTTSDFMGSA 275

Homo sapiens (taxid: 9606)

>sp|Q28BX9|C2CD5_XENTR C2 domain-containing protein 5 OS=Xenopus tropicalis GN=c2cd5 PE=2 SV=1

 Score = 56.2 bits (134), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 33/95 (34%), Positives = 52/95 (54%), Gaps = 7/95 (7%)

Query: 6  GLLRVHVLRGVNLAVRDVVS--SDPYVVIKMGKQ-LKTRVVKNNVNPEWNED-LTLSISD 61
          G L+V ++ G +L V D  S  +D +V +K G    KT V   ++NP+WN +     + D
Sbjct: 3  GKLKVKIVAGRHLPVMDRASDLTDAFVEVKFGNTTFKTDVYHKSLNPQWNSEWFKFEVDD 62

Query: 62 SNL---PIKLTVYDKDTFSLDDKMGDAEFYITPFL 93
           +L   P+++TV D DT+S +D +G     I P L
Sbjct: 63 EDLQDEPLQITVLDHDTYSANDAIGKVYIDIDPLL 97

Xenopus tropicalis (taxid: 8364)

>sp|Q5RJH2|MCTP2_MOUSE Multiple C2 and transmembrane domain-containing protein 2 OS=Mus musculus GN=Mctp2 PE=2 SV=1

 Score = 55.8 bits (133), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 51/82 (62%), Gaps = 4/82 (4%)

Query: 7   LLRVHVLRGVNLAVRDVV-SSDPYVVIKM-GKQL-KTRVVKNNVNPEWNEDLTLSISDSN 63
           LL +H+  G NL VRD   +SDPYV  K+ GK L K++V+  N+NP W+E + L I   +
Sbjct: 195 LLTIHLKEGRNLVVRDRCGTSDPYVKFKLNGKTLYKSKVIYKNLNPIWDEIVVLPIQSLD 254

Query: 64  LPIKLTVYDKDTFSLDDKMGDA 85
             +++ VYD+D  +  D MG A
Sbjct: 255 QKLRVKVYDRD-LTKSDFMGSA 275

Mus musculus (taxid: 10090)

>sp|Q6DN14|MCTP1_HUMAN Multiple C2 and transmembrane domain-containing protein 1 OS=Homo sapiens GN=MCTP1 PE=2 SV=2

 Score = 55.5 bits (132), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/81 (38%), Positives = 48/81 (59%), Gaps = 2/81 (2%)

Query: 5   MGLLRVHVLRGVNLAVRDVVS-SDPYVVIKMGK-QLKTRVVKNNVNPEWNEDLTLSISDS 62
           +G L+V V+R   L   DV   SDP+ V+++   +L T  V  N+NPEWN+  T +I D 
Sbjct: 625 VGFLQVKVIRAEGLMAADVTGKSDPFCVVELNNDRLLTHTVYKNLNPEWNKVFTFNIKDI 684

Query: 63  NLPIKLTVYDKDTFSLDDKMG 83
           +  +++TVYD+D     D +G
Sbjct: 685 HSVLEVTVYDEDRDRSADFLG 705

Homo sapiens (taxid: 9606)

>sp|Q5RBF2|NED4L_PONAB E3 ubiquitin-protein ligase NEDD4-like OS=Pongo abelii GN=NEDD4L PE=2 SV=1

 Score = 54.3 bits (129), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 54/89 (60%), Gaps = 9/89 (10%)

Query: 7   LLRVHVLRGVNLAVRDVV-SSDPYVVIKM-----GKQL---KTRVVKNNVNPEWNEDLTL 57
           +LRV V+ G++LA +D+  +SDPYV + +      ++L   +T+ +K  +NP+WNE+   
Sbjct: 25  ILRVKVVSGIDLAKKDIFGASDPYVKLSLYVADENRELALVQTKTIKKTLNPKWNEEFYF 84

Query: 58  SISDSNLPIKLTVYDKDTFSLDDKMGDAE 86
            ++ SN  +   V+D++  + DD +G  +
Sbjct: 85  RVNPSNHRLLFEVFDENRLTRDDFLGQVD 113

E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. Inhibits TGF-beta signaling by triggering SMAD2 and TGFBR1 ubiquitination and proteasome-dependent degradation. Promotes ubiquitination and internalization of various plasma membrane channels such as ENaC, Nav1.2, Nav1.3, Nav1.5, Nav1.7, Nav1.8, Kv1.3, EAAT1 or CLC5. Promotes ubiquitination and degradation of SGK1 and TNK2.

Pongo abelii (taxid: 9601)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	164
255586787	169	ARF GTPase activator, putative [Ricinus	1.0	0.970	0.781	4e-73
225456169	181	PREDICTED: probable ADP-ribosylation fac	1.0	0.906	0.787	3e-71
147805778	165	hypothetical protein VITISV_014376 [Viti	1.0	0.993	0.787	5e-71
224077286	165	predicted protein [Populus trichocarpa]	1.0	0.993	0.787	1e-70
356569576	165	PREDICTED: probable ADP-ribosylation fac	1.0	0.993	0.781	3e-70
217071206	165	unknown [Medicago truncatula] gi|3885097	0.987	0.981	0.785	4e-70
225453173	165	PREDICTED: probable ADP-ribosylation fac	1.0	0.993	0.763	6e-70
351724231	165	uncharacterized protein LOC100306214 [Gl	1.0	0.993	0.781	7e-70
449456194	165	PREDICTED: probable ADP-ribosylation fac	1.0	0.993	0.751	5e-69
356569578	177	PREDICTED: probable ADP-ribosylation fac	1.0	0.926	0.728	1e-68

>gi|255586787|ref|XP_002534010.1| ARF GTPase activator, putative [Ricinus communis] gi|223525988|gb|EEF28372.1| ARF GTPase activator, putative [Ricinus communis]

 Score =  279 bits (713), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 129/165 (78%), Positives = 154/165 (93%), Gaps = 1/165 (0%)

Query: 1   MENLMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQ-LKTRVVKNNVNPEWNEDLTLSI 59
           +E+LMGLLR+HV RGVNLA+RDV++SDPY+V+K+GKQ LKTRVVK N+NPEWNEDLTLSI
Sbjct: 5   IESLMGLLRIHVHRGVNLAIRDVLTSDPYIVVKLGKQKLKTRVVKKNINPEWNEDLTLSI 64

Query: 60  SDSNLPIKLTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENC 119
           S+ NLP+K+ VYD+DTFS DDKMGDAEF I PFLEALKM L+GLP+GTI+T+IQPSRENC
Sbjct: 65  SNPNLPVKIGVYDRDTFSRDDKMGDAEFDIHPFLEALKMHLQGLPSGTIITRIQPSRENC 124

Query: 120 LAEESHIVWTDGKLVQNLFLRLRNVEVGEVKIQLEWIDIPGSRGL 164
           LAEESH++W DGK+VQNLFLRLRNVE GE+++QL+WIDIPGSRGL
Sbjct: 125 LAEESHVLWVDGKVVQNLFLRLRNVECGEIELQLQWIDIPGSRGL 169

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456169|ref|XP_002282569.1| PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD11-like [Vitis vinifera]

 Score =  272 bits (696), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 130/165 (78%), Positives = 150/165 (90%), Gaps = 1/165 (0%)

Query: 1   MENLMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQ-LKTRVVKNNVNPEWNEDLTLSI 59
           MENL+GLLRV V RG+NLAVRDV SSDPY VIKMGKQ LKTRV+K NVNPEWNEDLTLSI
Sbjct: 17  MENLLGLLRVRVKRGINLAVRDVRSSDPYAVIKMGKQKLKTRVMKKNVNPEWNEDLTLSI 76

Query: 60  SDSNLPIKLTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENC 119
           SD NLPIKLTVYD DTFS DDKMGDAEF I P+LEAL+M LEGLP+GTI++++QPSR+NC
Sbjct: 77  SDPNLPIKLTVYDHDTFSKDDKMGDAEFTINPYLEALRMHLEGLPSGTIISRVQPSRQNC 136

Query: 120 LAEESHIVWTDGKLVQNLFLRLRNVEVGEVKIQLEWIDIPGSRGL 164
           LAEES IVWTDG++VQ++ LRLRNVE GEV++QL+WID+PGS+GL
Sbjct: 137 LAEESCIVWTDGRVVQDICLRLRNVECGEVELQLQWIDLPGSKGL 181

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147805778|emb|CAN69475.1| hypothetical protein VITISV_014376 [Vitis vinifera] gi|297734335|emb|CBI15582.3| unnamed protein product [Vitis vinifera]

 Score =  271 bits (694), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 130/165 (78%), Positives = 150/165 (90%), Gaps = 1/165 (0%)

Query: 1   MENLMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQ-LKTRVVKNNVNPEWNEDLTLSI 59
           MENL+GLLRV V RG+NLAVRDV SSDPY VIKMGKQ LKTRV+K NVNPEWNEDLTLSI
Sbjct: 1   MENLLGLLRVRVKRGINLAVRDVRSSDPYAVIKMGKQKLKTRVMKKNVNPEWNEDLTLSI 60

Query: 60  SDSNLPIKLTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENC 119
           SD NLPIKLTVYD DTFS DDKMGDAEF I P+LEAL+M LEGLP+GTI++++QPSR+NC
Sbjct: 61  SDPNLPIKLTVYDHDTFSKDDKMGDAEFTINPYLEALRMHLEGLPSGTIISRVQPSRQNC 120

Query: 120 LAEESHIVWTDGKLVQNLFLRLRNVEVGEVKIQLEWIDIPGSRGL 164
           LAEES IVWTDG++VQ++ LRLRNVE GEV++QL+WID+PGS+GL
Sbjct: 121 LAEESCIVWTDGRVVQDICLRLRNVECGEVELQLQWIDLPGSKGL 165

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224077286|ref|XP_002305199.1| predicted protein [Populus trichocarpa] gi|118481958|gb|ABK92911.1| unknown [Populus trichocarpa] gi|222848163|gb|EEE85710.1| predicted protein [Populus trichocarpa]

 Score =  270 bits (690), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 130/165 (78%), Positives = 148/165 (89%), Gaps = 1/165 (0%)

Query: 1   MENLMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQ-LKTRVVKNNVNPEWNEDLTLSI 59
           MENLMGLLR+HV+RGVNLAVRDV SSDPYVV+KMGKQ LKTRV+K N+NPEWN+DLTLSI
Sbjct: 1   MENLMGLLRIHVIRGVNLAVRDVCSSDPYVVVKMGKQKLKTRVIKQNINPEWNDDLTLSI 60

Query: 60  SDSNLPIKLTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENC 119
            D  LP+ + VYDKDTFSLDDKMGDAEF I+ F+E +KMRL+ LP+GTI+ KIQPSRENC
Sbjct: 61  VDPKLPVLIRVYDKDTFSLDDKMGDAEFDISQFIEVVKMRLDNLPSGTIIRKIQPSRENC 120

Query: 120 LAEESHIVWTDGKLVQNLFLRLRNVEVGEVKIQLEWIDIPGSRGL 164
           LAEES IVW  GKLVQNLFLRL++VE GEV++QLEWIDIPGSRGL
Sbjct: 121 LAEESCIVWATGKLVQNLFLRLKHVETGEVELQLEWIDIPGSRGL 165

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356569576|ref|XP_003552975.1| PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD11-like isoform 1 [Glycine max]

 Score =  269 bits (688), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 129/165 (78%), Positives = 148/165 (89%), Gaps = 1/165 (0%)

Query: 1   MENLMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQ-LKTRVVKNNVNPEWNEDLTLSI 59
           MENL+GLLR+HV +GVNLA+RDVVSSDPYVVIKMG+Q LKTRVVK N+NPEWN+DLTLSI
Sbjct: 1   MENLLGLLRIHVEKGVNLAIRDVVSSDPYVVIKMGRQKLKTRVVKKNLNPEWNDDLTLSI 60

Query: 60  SDSNLPIKLTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENC 119
           SD + PI L VYDKDTFS+DDKMGDAEF+I PF+EA+KMRL GLPN TIVTK+ PSR+NC
Sbjct: 61  SDPHAPIHLHVYDKDTFSMDDKMGDAEFFIGPFIEAVKMRLSGLPNNTIVTKVLPSRQNC 120

Query: 120 LAEESHIVWTDGKLVQNLFLRLRNVEVGEVKIQLEWIDIPGSRGL 164
           LAEESHI+  DGK+VQN+ LRLRNVE GEV++QL WIDIPGSR L
Sbjct: 121 LAEESHIMLKDGKVVQNMVLRLRNVESGEVELQLHWIDIPGSRHL 165

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217071206|gb|ACJ83963.1| unknown [Medicago truncatula] gi|388509716|gb|AFK42924.1| unknown [Medicago truncatula]

 Score =  268 bits (686), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 128/163 (78%), Positives = 144/163 (88%), Gaps = 1/163 (0%)

Query: 1   MENLMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQ-LKTRVVKNNVNPEWNEDLTLSI 59
           MENL+GLL++HV RGVNLA+RDVVSSDPYVVIKM KQ LKTRVVK N+NPEWNEDLTLSI
Sbjct: 1   MENLLGLLKIHVQRGVNLAIRDVVSSDPYVVIKMAKQKLKTRVVKKNLNPEWNEDLTLSI 60

Query: 60  SDSNLPIKLTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENC 119
           SD + PI L VYDKDTFSLDDKMGDAEF I PF EA+KMRL GLPN  IVT++QPSR+NC
Sbjct: 61  SDPHTPIHLYVYDKDTFSLDDKMGDAEFDIGPFFEAVKMRLAGLPNEAIVTRVQPSRQNC 120

Query: 120 LAEESHIVWTDGKLVQNLFLRLRNVEVGEVKIQLEWIDIPGSR 162
           LAEESHIVW DGK+ QN+ LRLRNVE GEV++QL W+DIPGS+
Sbjct: 121 LAEESHIVWKDGKIFQNMVLRLRNVECGEVELQLHWVDIPGSK 163

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453173|ref|XP_002275235.1| PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD11 [Vitis vinifera] gi|296087148|emb|CBI33522.3| unnamed protein product [Vitis vinifera]

 Score =  268 bits (685), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 126/165 (76%), Positives = 150/165 (90%), Gaps = 1/165 (0%)

Query: 1   MENLMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQ-LKTRVVKNNVNPEWNEDLTLSI 59
           ME+L GLLR+HV RGVNLA RDV+SSDPYV+++MGKQ LKTRVV  NVNPEWNEDLTLS+
Sbjct: 1   MEHLHGLLRIHVHRGVNLAKRDVLSSDPYVIVRMGKQKLKTRVVNKNVNPEWNEDLTLSV 60

Query: 60  SDSNLPIKLTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENC 119
            D+NLP+K+ VYD+DTFSLDDKMGDAEF I PF+EAL+M L GLP+GTI+T++QP+RENC
Sbjct: 61  DDTNLPVKIFVYDRDTFSLDDKMGDAEFQIGPFVEALRMELNGLPSGTIITRVQPNRENC 120

Query: 120 LAEESHIVWTDGKLVQNLFLRLRNVEVGEVKIQLEWIDIPGSRGL 164
           LAEES I+WT+GK+VQNL LRLRNVE GEV++QL+WIDIPGSRGL
Sbjct: 121 LAEESCIIWTEGKVVQNLVLRLRNVESGEVELQLQWIDIPGSRGL 165

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351724231|ref|NP_001235515.1| uncharacterized protein LOC100306214 [Glycine max] gi|255627881|gb|ACU14285.1| unknown [Glycine max]

 Score =  268 bits (684), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 129/165 (78%), Positives = 146/165 (88%), Gaps = 1/165 (0%)

Query: 1   MENLMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQ-LKTRVVKNNVNPEWNEDLTLSI 59
           MENL+GLLR+HV +GVNLA+RDVVSSDPYVVIKMGKQ LKTRVV  N+NPEWN+DLTLSI
Sbjct: 1   MENLLGLLRIHVEKGVNLAIRDVVSSDPYVVIKMGKQKLKTRVVNKNLNPEWNDDLTLSI 60

Query: 60  SDSNLPIKLTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENC 119
           SD + PI L VYDKDTFS+DDKMGDAEF+I PF+EA+KMRL  LPN TIVTK+ PSR+N 
Sbjct: 61  SDPHAPIHLHVYDKDTFSMDDKMGDAEFFIGPFIEAVKMRLSSLPNNTIVTKVLPSRQNS 120

Query: 120 LAEESHIVWTDGKLVQNLFLRLRNVEVGEVKIQLEWIDIPGSRGL 164
           LAEESHIVW DGK+VQN+ LRLRNVE GEV++QL WIDIPGSR L
Sbjct: 121 LAEESHIVWKDGKVVQNMVLRLRNVETGEVELQLHWIDIPGSRHL 165

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449456194|ref|XP_004145835.1| PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD11-like [Cucumis sativus]

 Score =  265 bits (677), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 124/165 (75%), Positives = 146/165 (88%), Gaps = 1/165 (0%)

Query: 1   MENLMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQ-LKTRVVKNNVNPEWNEDLTLSI 59
           MENLMGLLR+HV RGVNLAVRDV SSDPYV+ KMGKQ LKTRVVK N+NPEWNEDLTLSI
Sbjct: 1   MENLMGLLRIHVFRGVNLAVRDVSSSDPYVIFKMGKQKLKTRVVKQNINPEWNEDLTLSI 60

Query: 60  SDSNLPIKLTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENC 119
            D +LP+ + VYDKD FSLDDKMGDAEF + PF+EA+KMRL  LP+GTI+ KIQPSRENC
Sbjct: 61  QDPSLPVNVLVYDKDLFSLDDKMGDAEFDVRPFVEAVKMRLNNLPSGTIIRKIQPSRENC 120

Query: 120 LAEESHIVWTDGKLVQNLFLRLRNVEVGEVKIQLEWIDIPGSRGL 164
           L+EES I+W +G+++Q +FLRLRNVE GE+++QL+WIDIPGSRGL
Sbjct: 121 LSEESCIIWVNGQVIQKMFLRLRNVESGEIELQLQWIDIPGSRGL 165

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356569578|ref|XP_003552976.1| PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD11-like isoform 2 [Glycine max]

 Score =  263 bits (673), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 129/177 (72%), Positives = 148/177 (83%), Gaps = 13/177 (7%)

Query: 1   MENLMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQ-------------LKTRVVKNNV 47
           MENL+GLLR+HV +GVNLA+RDVVSSDPYVVIKMG+Q             LKTRVVK N+
Sbjct: 1   MENLLGLLRIHVEKGVNLAIRDVVSSDPYVVIKMGRQINLKILNLFMWSKLKTRVVKKNL 60

Query: 48  NPEWNEDLTLSISDSNLPIKLTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLEGLPNGT 107
           NPEWN+DLTLSISD + PI L VYDKDTFS+DDKMGDAEF+I PF+EA+KMRL GLPN T
Sbjct: 61  NPEWNDDLTLSISDPHAPIHLHVYDKDTFSMDDKMGDAEFFIGPFIEAVKMRLSGLPNNT 120

Query: 108 IVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRNVEVGEVKIQLEWIDIPGSRGL 164
           IVTK+ PSR+NCLAEESHI+  DGK+VQN+ LRLRNVE GEV++QL WIDIPGSR L
Sbjct: 121 IVTKVLPSRQNCLAEESHIMLKDGKVVQNMVLRLRNVESGEVELQLHWIDIPGSRHL 177

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	164
TAIR|locus:2088505	177	C2 "AT3G17980" [Arabidopsis th	1.0	0.926	0.709	4.8e-62
TAIR|locus:2201497	174	AT1G66360 "AT1G66360" [Arabido	0.981	0.925	0.652	2.8e-57
TAIR|locus:2035042	168	AT1G73580 "AT1G73580" [Arabido	1.0	0.976	0.654	2.5e-56
TAIR|locus:2014020	165	AT1G70810 "AT1G70810" [Arabido	1.0	0.993	0.654	3.8e-53
TAIR|locus:2013905	185	AT1G70790 "AT1G70790" [Arabido	0.975	0.864	0.619	1.7e-50
TAIR|locus:2049602	180	AT2G01540 "AT2G01540" [Arabido	0.975	0.888	0.582	6e-48
TAIR|locus:2014015	174	EHB1 "AT1G70800" [Arabidopsis	1.0	0.942	0.575	1.1e-46
TAIR|locus:2201190	165	AT1G23140 "AT1G23140" [Arabido	0.981	0.975	0.555	3.4e-45
TAIR|locus:2077367	385	AT3G07940 [Arabidopsis thalian	0.963	0.410	0.475	1.5e-33
TAIR|locus:2160867	166	AT5G47710 "AT5G47710" [Arabido	0.957	0.945	0.418	4.2e-31

TAIR|locus:2088505 C2 "AT3G17980" [Arabidopsis thaliana (taxid:3702)]

 Score = 634 (228.2 bits), Expect = 4.8e-62, P = 4.8e-62
 Identities = 117/165 (70%), Positives = 144/165 (87%)

Query:     1 MENLMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQ-LKTRVVKNNVNPEWNEDLTLSI 59
             M++L+GLLR+ + RGVNLAVRD+ SSDPYVV+KMGKQ LKTRV+  +VNPEWNEDLTLS+
Sbjct:    13 MDDLLGLLRIRIKRGVNLAVRDISSSDPYVVVKMGKQKLKTRVINKDVNPEWNEDLTLSV 72

Query:    60 SDSNLPIKLTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENC 119
             +DSNL + LTVYD D FS DDKMGDAEF I P++EAL+M+L+GLP+GTIVT ++PSR NC
Sbjct:    73 TDSNLTVLLTVYDHDMFSKDDKMGDAEFEIKPYIEALRMQLDGLPSGTIVTTVKPSRRNC 132

Query:   120 LAEESHIVWTDGKLVQNLFLRLRNVEVGEVKIQLEWIDIPGSRGL 164
             LAEES + W DGKLVQ+L LRLR+VE GEV+ QL+WID+PGS+GL
Sbjct:   133 LAEESRVTWVDGKLVQDLVLRLRHVECGEVEAQLQWIDLPGSKGL 177

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2201497 AT1G66360 "AT1G66360" [Arabidopsis thaliana (taxid:3702)]

 Score = 589 (212.4 bits), Expect = 2.8e-57, P = 2.8e-57
 Identities = 107/164 (65%), Positives = 141/164 (85%)

Query:     1 MENLMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQ-LKTRVVKNNVNPEWNEDLTLSI 59
             MEN++GLLR+HV+RGVNLA+RD  SSDPYV+++MGKQ L+TRV+K N+N EWNEDLTLS+
Sbjct:     1 MENMLGLLRLHVIRGVNLAIRDSQSSDPYVIVRMGKQKLRTRVMKKNLNTEWNEDLTLSV 60

Query:    60 SDSNLPIKLTVYDKDTFSLDDKMGDAEFYITPFLEALKMR--LEGLPNGTIVTKIQPSRE 117
             +D  LP+K+ VYD+D FS DDKMGDA F+I PFLEA++++  L GLP GT++ KIQ SR+
Sbjct:    61 TDPTLPVKIMVYDRDRFSRDDKMGDAIFHIDPFLEAIRIQNQLGGLPEGTVIMKIQASRQ 120

Query:   118 NCLAEESHIVWTDGKLVQNLFLRLRNVEVGEVKIQLEWIDIPGS 161
             NCL+EES IVW  GK+VQN+FL+L+NVE GE+++QLEWID+ G+
Sbjct:   121 NCLSEESKIVWHKGKIVQNMFLKLQNVERGEIELQLEWIDVSGA 164

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2035042 AT1G73580 "AT1G73580" [Arabidopsis thaliana (taxid:3702)]

 Score = 580 (209.2 bits), Expect = 2.5e-56, P = 2.5e-56
 Identities = 108/165 (65%), Positives = 139/165 (84%)

Query:     1 MENLMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQ-LKTRVVKNNVNPEWNEDLTLSI 59
             M+NL+G+LRV V RGVNLAVRDV SSDPYVV+K+G+Q LKT+VVK NVNP+W EDL+ ++
Sbjct:     4 MDNLLGILRVRVQRGVNLAVRDVSSSDPYVVLKLGRQKLKTKVVKQNVNPQWQEDLSFTV 63

Query:    60 SDSNLPIKLTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENC 119
             +D NLP+ L VYD D FS DDKMGDAE  + P++EAL+M L GLP+GTI++ I PSR NC
Sbjct:    64 TDPNLPLTLIVYDHDFFSKDDKMGDAEIDLKPYIEALRMELSGLPDGTIISTIGPSRGNC 123

Query:   120 LAEESHIVWTDGKLVQNLFLRLRNVEVGEVKIQLEWIDIPGSRGL 164
             LAEES+I W + ++VQ++ LRLRNVE GEV+I+L+WID+PGS+GL
Sbjct:   124 LAEESYIRWINDRIVQHICLRLRNVERGEVEIELQWIDLPGSKGL 168

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2014020 AT1G70810 "AT1G70810" [Arabidopsis thaliana (taxid:3702)]

 Score = 550 (198.7 bits), Expect = 3.8e-53, P = 3.8e-53
 Identities = 108/165 (65%), Positives = 131/165 (79%)

Query:     1 MENLMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQ-LKTRVVKNNVNPEWNEDLTLSI 59
             ME L+GLLR+ V RG+NLA RD +SSDP+VVI MG Q LKTRVV+NN NPEWNE+LTL++
Sbjct:     1 MEELVGLLRIRVKRGINLAQRDTLSSDPFVVITMGSQKLKTRVVENNCNPEWNEELTLAL 60

Query:    60 SDSNLPIKLTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENC 119
                + P+ L VYDKDTF+  DKMGDA+  I PFLE  KM L+ LP+GT + ++ P+RENC
Sbjct:    61 RHPDEPVNLIVYDKDTFTSHDKMGDAKIDIKPFLEVHKMGLQELPDGTEIKRVVPNRENC 120

Query:   120 LAEESHIVWTDGKLVQNLFLRLRNVEVGEVKIQLEWIDIPGSRGL 164
             LAE S IV  +GK+VQN+ L LRNVE GEV+IQLEWIDIPGSRGL
Sbjct:   121 LAEASSIVSNNGKIVQNMILLLRNVECGEVEIQLEWIDIPGSRGL 165

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2013905 AT1G70790 "AT1G70790" [Arabidopsis thaliana (taxid:3702)]

 Score = 525 (189.9 bits), Expect = 1.7e-50, P = 1.7e-50
 Identities = 101/163 (61%), Positives = 124/163 (76%)

Query:     5 MGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQ-LKTRVVKNNVNPEWNEDLTLSISDSN 63
             +G+LRVHV RG+NLA+RD  +SDPYVVI +  Q LKTRV+ NN NP WNE LTLSI D N
Sbjct:     6 LGILRVHVKRGINLAIRDATTSDPYVVITLANQKLKTRVINNNCNPVWNEQLTLSIKDVN 65

Query:    64 LPIKLTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLE--GLPNGTIVTKIQPSRENCLA 121
              PI+LTV+DKD FS DDKMGDAE    PFLEA +M L+   LPNG  + +I+P R NCLA
Sbjct:    66 DPIRLTVFDKDRFSGDDKMGDAEIDFRPFLEAHQMELDFQKLPNGCAIKRIRPGRTNCLA 125

Query:   122 EESHIVWTDGKLVQNLFLRLRNVEVGEVKIQLEWIDIPGSRGL 164
             EES I W++GK++Q + LRL+NVE GEV++ LEW D PG +GL
Sbjct:   126 EESSITWSNGKIMQEMILRLKNVECGEVELMLEWTDGPGCKGL 168

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2049602 AT2G01540 "AT2G01540" [Arabidopsis thaliana (taxid:3702)]

 Score = 501 (181.4 bits), Expect = 6.0e-48, P = 6.0e-48
 Identities = 95/163 (58%), Positives = 124/163 (76%)

Query:     5 MGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQ-LKTRVVKNNVNPEWNEDLTLSISDSN 63
             +GLL +HV RG+NLA+RD  SSDPY+V+ +  Q LKTRVVK N NP WNE++T++I D N
Sbjct:     6 LGLLTIHVKRGINLAIRDHRSSDPYIVLNVADQTLKTRVVKKNCNPVWNEEMTVAIKDPN 65

Query:    64 LPIKLTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLE--GLPNGTIVTKIQPSRENCLA 121
             +PI+LTV+D D F+ DDKMGDA   I P+LEALKM +E   LPNG  + ++QPSR NCL+
Sbjct:    66 VPIRLTVFDWDKFTGDDKMGDANIDIQPYLEALKMGMELLRLPNGCAIKRVQPSRHNCLS 125

Query:   122 EESHIVWTDGKLVQNLFLRLRNVEVGEVKIQLEWIDIPGSRGL 164
             +ES IVW +GK+ Q+L LRL NVE GE++I LEW +  G RG+
Sbjct:   126 DESSIVWNNGKITQDLILRLNNVECGEIEIMLEWHEGAGCRGI 168

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005773 "vacuole" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2014015 EHB1 "AT1G70800" [Arabidopsis thaliana (taxid:3702)]

 Score = 489 (177.2 bits), Expect = 1.1e-46, P = 1.1e-46
 Identities = 95/165 (57%), Positives = 128/165 (77%)

Query:     1 MENLMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQ-LKTRVVKNNVNPEWNEDLTLSI 59
             M+ L+GL+R+ V RG++LA RD +SSDP+VVI MG Q LK+  VKNN NPEWNE+LTL+I
Sbjct:    10 MKELVGLVRILVKRGIDLARRDALSSDPFVVITMGPQKLKSFTVKNNCNPEWNEELTLAI 69

Query:    60 SDSNLPIKLTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENC 119
              D N P+KL VYDKDTF+ DDKMGDA+  + PFL+  K+ L+ LP+G  + +I P+R+NC
Sbjct:    70 EDPNEPVKLMVYDKDTFTADDKMGDAQIDMKPFLDVHKLGLKELPHGKELKRIVPTRDNC 129

Query:   120 LAEESHIVWTDGKLVQNLFLRLRNVEVGEVKIQLEWIDIPGSRGL 164
             L+E+S IV  +GK+VQ++ L L+NVE G+V+IQLEW+  PG  GL
Sbjct:   130 LSEDSIIVSDNGKIVQDMILLLKNVECGKVEIQLEWLKNPGGSGL 174

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0009637 "response to blue light" evidence=IMP

GO:0009638 "phototropism" evidence=IMP

TAIR|locus:2201190 AT1G23140 "AT1G23140" [Arabidopsis thaliana (taxid:3702)]

 Score = 475 (172.3 bits), Expect = 3.4e-45, P = 3.4e-45
 Identities = 90/162 (55%), Positives = 124/162 (76%)

Query:     1 MENLMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQ-LKTRVVKNNVNPEWNEDLTLSI 59
             MENL+GLLR+ V RG+NL  RD  +SDP+VV+ MG Q LKTR V+N+ NPEW+++LTL I
Sbjct:     1 MENLVGLLRIRVKRGINLVSRDSNTSDPFVVVTMGSQKLKTRGVENSCNPEWDDELTLGI 60

Query:    60 SDSNLPIKLTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENC 119
             +D N  + L VYDKDTF+  D MGDAE  I PF E     ++ L NGT + +++PS +NC
Sbjct:    61 NDPNQHVTLEVYDKDTFTSHDPMGDAEIDIKPFFEVQGTDIQELTNGTEIRRVKPSGDNC 120

Query:   120 LAEESHIVWTDGKLVQNLFLRLRNVEVGEVKIQLEWIDIPGS 161
             LAEES I++++GK++Q++ L+LRNVE GEV+IQ+EWI++ GS
Sbjct:   121 LAEESRIIFSNGKILQDMILQLRNVESGEVEIQIEWINVTGS 162

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

TAIR|locus:2077367 AT3G07940 [Arabidopsis thaliana (taxid:3702)]

 Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
 Identities = 76/160 (47%), Positives = 109/160 (68%)

Query:     1 MENLMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQ-LKTRVVKNNVNPEWNEDLTLSI 59
             M   +GL++V+V++G NLAVRDV++SDPYV++ +G+Q +KTRV+KNN+NP WNE L LSI
Sbjct:   224 MVEFVGLIKVNVVKGTNLAVRDVMTSDPYVILALGQQSVKTRVIKNNLNPVWNETLMLSI 283

Query:    60 SDSNLPIKLTVYDKDTFSLDDKMGDAEFYITPFLEALKM-RLEGLPNGTIVTKIQPSREN 118
              +   P+K+ VYDKDTFS DD MG+AE  I P + A K      +     +     S+EN
Sbjct:   284 PEPMPPLKVLVYDKDTFSTDDFMGEAEIDIQPLVSAAKAYETSSIKEPMQLGSWVASKEN 343

Query:   119 CLAEESHIVWTDGKLVQNLFLRLRNVEVGEVKIQLEWIDI 158
              L  +  I+  DGK+ Q++ LRL+NVE G ++IQLE + +
Sbjct:   344 TLVSDGIILLEDGKVKQDISLRLQNVERGVLEIQLECLPL 383

GO:0005634 "nucleus" evidence=ISM

GO:0008060 "ARF GTPase activator activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0032312 "regulation of ARF GTPase activity" evidence=IEA

TAIR|locus:2160867 AT5G47710 "AT5G47710" [Arabidopsis thaliana (taxid:3702)]

 Score = 342 (125.4 bits), Expect = 4.2e-31, P = 4.2e-31
 Identities = 67/160 (41%), Positives = 107/160 (66%)

Query:     5 MGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQ-LKTRVVKNNVNPEWNEDLTLSISDSN 63
             +GLL+V V++G  L +RD  SSDPYV++K+G +  KT+V+ N +NP WNE+L  ++ D  
Sbjct:     5 LGLLQVTVIQGKKLVIRDFKSSDPYVIVKLGNESAKTKVINNCLNPVWNEELNFTLKDPA 64

Query:    64 LPIKLTVYDKDTFSLDDKMGDAEFYITPFLEALKMR-LEGLPNG-TIVTKIQPSRENCLA 121
               + L V+DKD F  DDKMG A   + P +   ++R +  + +G T + K+ P  ENC++
Sbjct:    65 AVLALEVFDKDRFKADDKMGHASLSLQPLISVARLRHVVRVSSGETTLRKVLPDPENCVS 124

Query:   122 EESHIVWTDGKLVQNLFLRLRNVEVGEVKIQLEWIDIPGS 161
              ES I   DG++VQ+++LRL  VE GE++++++ ID PG+
Sbjct:   125 RESTISCIDGEVVQSVWLRLCAVESGEIELKIKLIDPPGT 164

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005773 "vacuole" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00017844001 SubName- Full=Putative uncharacterized protein (Chromosome chr17 scaffold_16, whole genome shotgun sequence); (165 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	164
cd04038	145	cd04038, C2_ArfGAP, C2 domain present in Arf GTPas	1e-69
pfam00168	85	pfam00168, C2, C2 domain	3e-23
cd00030	102	cd00030, C2, C2 domain	7e-22
cd04042	121	cd04042, C2A_MCTP_PRT, C2 domain first repeat foun	2e-20
smart00239	101	smart00239, C2, Protein kinase C conserved region	2e-19
cd04024	128	cd04024, C2A_Synaptotagmin-like, C2 domain first r	6e-17
cd04041	111	cd04041, C2A_fungal, C2 domain first repeat; funga	7e-15
cd04036	119	cd04036, C2_cPLA2, C2 domain present in cytosolic	2e-14
cd04039	108	cd04039, C2_PSD, C2 domain present in Phosphatidyl	1e-13
cd08391	121	cd08391, C2A_C2C_Synaptotagmin_like, C2 domain fir	1e-13
cd04049	124	cd04049, C2_putative_Elicitor-responsive_gene, C2	7e-13
cd04037	124	cd04037, C2E_Ferlin, C2 domain fifth repeat in Fer	3e-12
cd04033	133	cd04033, C2_NEDD4_NEDD4L, C2 domain present in the	3e-12
cd08375	136	cd08375, C2_Intersectin, C2 domain present in Inte	1e-11
cd08377	119	cd08377, C2C_MCTP_PRT, C2 domain third repeat foun	4e-11
COG5038	1227	COG5038, COG5038, Ca2+-dependent lipid-binding pro	7e-11
cd04044	124	cd04044, C2A_Tricalbin-like, C2 domain first repea	3e-10
cd00276	134	cd00276, C2B_Synaptotagmin, C2 domain second repea	4e-10
cd04026	131	cd04026, C2_PKC_alpha_gamma, C2 domain in Protein	7e-10
cd08384	133	cd08384, C2B_Rabphilin_Doc2, C2 domain second repe	1e-09
cd08386	125	cd08386, C2A_Synaptotagmin-7, C2A domain first rep	2e-09
cd04018	151	cd04018, C2C_Ferlin, C2 domain third repeat in Fer	2e-09
cd04040	115	cd04040, C2D_Tricalbin-like, C2 domain fourth repe	3e-09
cd04009	133	cd04009, C2B_Munc13-like, C2 domain second repeat	4e-09
cd04046	126	cd04046, C2_Calpain, C2 domain present in Calpain	4e-09
cd08688	110	cd08688, C2_KIAA0528-like, C2 domain found in the	5e-09
cd04020	162	cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat	5e-09
cd08521	123	cd08521, C2A_SLP, C2 domain first repeat present i	1e-08
cd04027	127	cd04027, C2B_Munc13, C2 domain second repeat in Mu	4e-08
cd04025	123	cd04025, C2B_RasA1_RasA4, C2 domain second repeat	4e-08
cd08385	124	cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain	5e-08
cd04032	127	cd04032, C2_Perforin, C2 domain of Perforin	5e-08
cd08376	116	cd08376, C2B_MCTP_PRT, C2 domain second repeat fou	7e-08
cd08387	124	cd08387, C2A_Synaptotagmin-8, C2A domain first rep	1e-07
cd08393	125	cd08393, C2A_SLP-1_2, C2 domain first repeat prese	3e-07
cd04047	110	cd04047, C2B_Copine, C2 domain second repeat in Co	3e-07
cd08382	123	cd08382, C2_Smurf-like, C2 domain present in Smad	5e-07
cd04054	121	cd04054, C2A_Rasal1_RasA4, C2 domain first repeat	5e-07
cd04022	127	cd04022, C2A_MCTP_PRT_plant, C2 domain first repea	5e-07
cd04043	126	cd04043, C2_Munc13_fungal, C2 domain in Munc13 (ma	7e-07
cd04045	120	cd04045, C2C_Tricalbin-like, C2 domain third repea	7e-07
cd08379	126	cd08379, C2D_MCTP_PRT_plant, C2 domain fourth repe	9e-07
cd08405	136	cd08405, C2B_Synaptotagmin-7, C2 domain second rep	1e-06
cd08675	137	cd08675, C2B_RasGAP, C2 domain second repeat of Ra	1e-06
cd00275	128	cd00275, C2_PLC_like, C2 domain present in Phospho	2e-06
cd04031	125	cd04031, C2A_RIM1alpha, C2 domain first repeat con	2e-06
cd04035	123	cd04035, C2A_Rabphilin_Doc2, C2 domain first repea	2e-06
cd04011	111	cd04011, C2B_Ferlin, C2 domain second repeat in Fe	3e-06
cd04048	120	cd04048, C2A_Copine, C2 domain first repeat in Cop	5e-06
PLN03008	868	PLN03008, PLN03008, Phospholipase D delta	8e-06
COG5038	1227	COG5038, COG5038, Ca2+-dependent lipid-binding pro	1e-05
cd04019	150	cd04019, C2C_MCTP_PRT_plant, C2 domain third repea	1e-05
cd08390	123	cd08390, C2A_Synaptotagmin-15-17, C2A domain first	2e-05
cd08402	136	cd08402, C2B_Synaptotagmin-1, C2 domain second rep	3e-05
cd04015	158	cd04015, C2_plant_PLD, C2 domain present in plant	3e-05
cd04029	125	cd04029, C2A_SLP-4_5, C2 domain first repeat prese	3e-05
cd08678	126	cd08678, C2_C21orf25-like, C2 domain found in the	8e-05
cd08410	135	cd08410, C2B_Synaptotagmin-17, C2 domain second re	1e-04
cd08403	134	cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain s	1e-04
cd04017	135	cd04017, C2D_Ferlin, C2 domain fourth repeat in Fe	2e-04
cd08388	128	cd08388, C2A_Synaptotagmin-4-11, C2A domain first	2e-04
cd08381	122	cd08381, C2B_PI3K_class_II, C2 domain second repea	4e-04
cd04021	125	cd04021, C2_E3_ubiquitin_ligase, C2 domain present	4e-04
cd08380	156	cd08380, C2_PI3K_like, C2 domain present in phosph	5e-04
cd04030	127	cd04030, C2C_KIAA1228, C2 domain third repeat pres	8e-04
cd08682	126	cd08682, C2_Rab11-FIP_classI, C2 domain found in R	0.001
cd08378	121	cd08378, C2B_MCTP_PRT_plant, C2 domain second repe	0.002
cd08404	136	cd08404, C2B_Synaptotagmin-4, C2 domain second rep	0.002
cd04052	111	cd04052, C2B_Tricalbin-like, C2 domain second repe	0.004

>gnl|CDD|176003 cd04038, C2_ArfGAP, C2 domain present in Arf GTPase Activating Proteins (GAP)

 Score =  206 bits (527), Expect = 1e-69
 Identities = 87/144 (60%), Positives = 108/144 (75%), Gaps = 2/144 (1%)

Query: 6   GLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQ-LKTRVVKNNVNPEWNEDLTLSISDSNL 64
           GLL+V V+RG NLAVRD  SSDPYVV+ +G Q +KTRV+K N+NP WNE+LTLS+ +   
Sbjct: 2   GLLKVRVVRGTNLAVRDFTSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNPMA 61

Query: 65  PIKLTVYDKDTFSLDDKMGDAEFYITPFLEALKMR-LEGLPNGTIVTKIQPSRENCLAEE 123
           P+KL V+DKDTFS DD MG+AE  + P +EA K+  L   P GT + K+ PS ENCLA E
Sbjct: 62  PLKLEVFDKDTFSKDDSMGEAEIDLEPLVEAAKLDHLRDTPGGTQIKKVLPSVENCLASE 121

Query: 124 SHIVWTDGKLVQNLFLRLRNVEVG 147
           SHI W DGK+VQ+L L+LRNVE G
Sbjct: 122 SHITWKDGKIVQDLVLKLRNVESG 145

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 145

>gnl|CDD|215765 pfam00168, C2, C2 domain

 Score = 87.3 bits (217), Expect = 3e-23
 Identities = 35/85 (41%), Positives = 49/85 (57%), Gaps = 6/85 (7%)

Query: 8  LRVHVLRGVNLAVRDVVS-SDPYVVIKMGKQ----LKTRVVKNNVNPEWNEDLTLSISDS 62
          LRV V+   NL  +D+   SDPYV + +G Q     KT+VVKN +NP WNE  T  ++  
Sbjct: 1  LRVTVISAKNLPPKDLNGKSDPYVKVSLGGQKKDTKKTKVVKNTLNPVWNETFTFEVTLP 60

Query: 63 NLP-IKLTVYDKDTFSLDDKMGDAE 86
           L  +++ VYD D F  DD +G+  
Sbjct: 61 ELAELRIEVYDYDRFGKDDFIGEVT 85

Length = 85

>gnl|CDD|175973 cd00030, C2, C2 domain

 Score = 84.0 bits (208), Expect = 7e-22
 Identities = 37/94 (39%), Positives = 55/94 (58%), Gaps = 4/94 (4%)

Query: 8  LRVHVLRGVNLAVRDVV-SSDPYVVIKMGKQL--KTRVVKNNVNPEWNEDLTLSISDSNL 64
          LRV V+   NL  +D+   SDPYV + +G +   KT+VVKN +NP WNE     + D   
Sbjct: 1  LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPES 60

Query: 65 P-IKLTVYDKDTFSLDDKMGDAEFYITPFLEALK 97
            + + V+DKD FS DD +G+ E  ++  L++ K
Sbjct: 61 DTLTVEVWDKDRFSKDDFLGEVEIPLSELLDSGK 94

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102

>gnl|CDD|176007 cd04042, C2A_MCTP_PRT, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 80.8 bits (200), Expect = 2e-20
 Identities = 35/84 (41%), Positives = 47/84 (55%), Gaps = 3/84 (3%)

Query: 7  LLRVHVLRGVNLAVRDVV-SSDPYVVIKM-GKQL-KTRVVKNNVNPEWNEDLTLSISDSN 63
           L +H+  G NLA RD   +SDPYV  K  GK + K++ +  N+NP W+E  TL I D  
Sbjct: 1  QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVT 60

Query: 64 LPIKLTVYDKDTFSLDDKMGDAEF 87
           P+ + V+D D    DD MG A  
Sbjct: 61 QPLYIKVFDYDRGLTDDFMGSAFV 84

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 121

>gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB)

 Score = 77.5 bits (191), Expect = 2e-19
 Identities = 31/87 (35%), Positives = 43/87 (49%), Gaps = 6/87 (6%)

Query: 7  LLRVHVLRGVNLAVRDVV-SSDPYVVIKMGKQ----LKTRVVKNNVNPEWNEDLTLSISD 61
           L V ++   NL  +D    SDPYV + +        KT+VVKN +NP WNE     +  
Sbjct: 1  TLTVKIISARNLPPKDKGGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPP 60

Query: 62 SNL-PIKLTVYDKDTFSLDDKMGDAEF 87
            L  +++ VYDKD F  DD +G    
Sbjct: 61 PELAELEIEVYDKDRFGRDDFIGQVTI 87

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101

>gnl|CDD|175990 cd04024, C2A_Synaptotagmin-like, C2 domain first repeat present in Synaptotagmin-like proteins

 Score = 72.1 bits (177), Expect = 6e-17
 Identities = 33/87 (37%), Positives = 51/87 (58%), Gaps = 5/87 (5%)

Query: 6  GLLRVHVLRGVNLAVRDVVS---SDPYVVIKMGKQ-LKTRVVKNNVNPEWNEDLTLSI-S 60
          G+LRVHV+   +LA +D      SDPY ++ +G Q  KT+ + N +NP+WN      I S
Sbjct: 1  GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFS 60

Query: 61 DSNLPIKLTVYDKDTFSLDDKMGDAEF 87
            N  +KL ++DKD F+  D +G+ + 
Sbjct: 61 AQNQLLKLILWDKDRFAGKDYLGEFDI 87

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128

>gnl|CDD|176006 cd04041, C2A_fungal, C2 domain first repeat; fungal group

 Score = 66.1 bits (162), Expect = 7e-15
 Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 10/94 (10%)

Query: 6  GLLRVHVLRGVNLAVRDVV--SSDPYVVIKMGKQLK----TRVVKNNVNPEWNEDLTLSI 59
          G+L V + R  +L   D    SSDPYV     K  K    TR+++ ++NP W E   + +
Sbjct: 1  GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLV 60

Query: 60 S----DSNLPIKLTVYDKDTFSLDDKMGDAEFYI 89
          +     +   +   ++D D F+ DD++G  E  +
Sbjct: 61 TPDEVKAGERLSCRLWDSDRFTADDRLGRVEIDL 94

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 111

>gnl|CDD|176001 cd04036, C2_cPLA2, C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

 Score = 65.4 bits (160), Expect = 2e-14
 Identities = 31/88 (35%), Positives = 46/88 (52%), Gaps = 9/88 (10%)

Query: 7  LLRVHVLRGVNLAVRDVVS-SDPYVVIKM----GKQLKTRVVKNNVNPEWNEDLTLSISD 61
          LL V VLR  N+   D++S  D YV + +     ++ +T+ +KN++NP WNE     I  
Sbjct: 1  LLTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRI-Q 59

Query: 62 SNLPIKL--TVYDKDTFSLDDKMGDAEF 87
          S +   L  TV D+D    DD +G   F
Sbjct: 60 SQVKNVLELTVMDEDYVM-DDHLGTVLF 86

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members of this cd have a type-II topology. Length = 119

>gnl|CDD|176004 cd04039, C2_PSD, C2 domain present in Phosphatidylserine decarboxylase (PSD)

 Score = 63.0 bits (154), Expect = 1e-13
 Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 3/72 (4%)

Query: 27 DPYVVIKMGKQ-LKTRVVKNNVNPEWNEDLTLSI--SDSNLPIKLTVYDKDTFSLDDKMG 83
          DP+V+I  G++  +T   ++ +NP +NE L   +   + N  I+  V DKD FS +D + 
Sbjct: 27 DPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFSFNDYVA 86

Query: 84 DAEFYITPFLEA 95
               +   L A
Sbjct: 87 TGSLSVQELLNA 98

PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 108

>gnl|CDD|176037 cd08391, C2A_C2C_Synaptotagmin_like, C2 domain first and third repeat in Synaptotagmin-like proteins

 Score = 63.1 bits (154), Expect = 1e-13
 Identities = 32/119 (26%), Positives = 59/119 (49%), Gaps = 20/119 (16%)

Query: 6   GLLRVHVLRGVNLAVRDVV-------SSDPYVVIKMGKQL-KTRVVKNNVNPEWNEDLTL 57
           G+LR+HV+   +L  +D          SDPYV++++G Q  K++V+K N+NP+WNE    
Sbjct: 1   GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEA 60

Query: 58  SISD-SNLPIKLTVYDKDTFSLDDKMGDAEFYITPFLEALKMR-------LEGLPNGTI 108
            + +     +++ ++D+D    DD +G     +       K         LE + +G +
Sbjct: 61  VVDEVPGQELEIELFDEDPDK-DDFLGRLSIDLG---SVEKKGFIDEWLPLEDVKSGRL 115

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains either the first or third repeat in Synaptotagmin-like proteins with a type-I topology. Length = 121

>gnl|CDD|176014 cd04049, C2_putative_Elicitor-responsive_gene, C2 domain present in the putative elicitor-responsive gene

 Score = 61.6 bits (150), Expect = 7e-13
 Identities = 38/124 (30%), Positives = 59/124 (47%), Gaps = 15/124 (12%)

Query: 6   GLLRVHVLRGVNLAVRDVVSS-DPYVVIKMGKQL-KTRVVKN-NVNPEWNEDLTLSISDS 62
           G L V ++    L   D +   DPYV+I+   Q  K++V K    NPEWNE    ++   
Sbjct: 1   GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYP 60

Query: 63  NLP----IKLTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSREN 118
                  + L + DKD FS DD +G+A  ++    E      EG+  GT   ++ P++ N
Sbjct: 61  GWGGDTKLILRIMDKDNFSDDDFIGEATIHLKGLFE------EGVEPGTA--ELVPAKYN 112

Query: 119 CLAE 122
            + E
Sbjct: 113 VVLE 116

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members have a type-II topology. Length = 124

>gnl|CDD|176002 cd04037, C2E_Ferlin, C2 domain fifth repeat in Ferlin

 Score = 59.9 bits (146), Expect = 3e-12
 Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 11/85 (12%)

Query: 7  LLRVHVLRGVNLAVRDVVS-SDPYVVIKMGKQ---LKTRVVKNNVNPEWNEDLTLSISDS 62
          L+RV+V+R  NL  +D    SDPY+ IK+GK+    +   + N +NP + +   L  +  
Sbjct: 1  LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEAT-- 58

Query: 63 NLPI----KLTVYDKDTFSLDDKMG 83
           LP     K++V D D    DD +G
Sbjct: 59 -LPGNSILKISVMDYDLLGSDDLIG 82

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 124

>gnl|CDD|175999 cd04033, C2_NEDD4_NEDD4L, C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

 Score = 60.1 bits (146), Expect = 3e-12
 Identities = 28/89 (31%), Positives = 50/89 (56%), Gaps = 9/89 (10%)

Query: 7  LLRVHVLRGVNLAVRDVV-SSDPYVVIKMGK--------QLKTRVVKNNVNPEWNEDLTL 57
          +LRV VL G++LA +D+  +SDPYV I +           ++T+ +K  +NP+WNE+   
Sbjct: 1  ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFF 60

Query: 58 SISDSNLPIKLTVYDKDTFSLDDKMGDAE 86
           ++     +   V+D++  + DD +G  E
Sbjct: 61 RVNPREHRLLFEVFDENRLTRDDFLGQVE 89

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 133

>gnl|CDD|176021 cd08375, C2_Intersectin, C2 domain present in Intersectin

 Score = 58.5 bits (142), Expect = 1e-11
 Identities = 44/152 (28%), Positives = 65/152 (42%), Gaps = 35/152 (23%)

Query: 6   GLLRVHVLRGVNLAVRDVVS-SDPYVVIKMGKQ-LKTRVVKNNVNPEWNEDLTLSISDSN 63
           G L V ++ G +L   +    SDPY  + MG Q  KT+VV + +NP+WN  +   + D  
Sbjct: 15  GRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLE 74

Query: 64  LPIK-LTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAE 122
             +  +TV+D+D FS DD +G  E           +R         V  I         +
Sbjct: 75  QDVLCITVFDRDFFSPDDFLGRTE-----------IR---------VADILKET-----K 109

Query: 123 ESHIVWTDGKLVQNLFLRLRNVEVGEVKIQLE 154
           ES    T         L L  V  GEV ++L+
Sbjct: 110 ESKGPITKR-------LLLHEVPTGEVVVKLD 134

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. The members here have topology I. Length = 136

>gnl|CDD|176023 cd08377, C2C_MCTP_PRT, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 56.5 bits (137), Expect = 4e-11
 Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 8/84 (9%)

Query: 6  GLLRVHVLRGVNLAVRDVV-SSDPYVVIKMGKQ-LKTRVVKNNVNPEWNEDLTLSISDSN 63
          G L+V V+R   LA  D+   SDP+ V+++    L+T  +   +NPEWN+  T  I D +
Sbjct: 1  GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDIH 60

Query: 64 LPIKLTVYDKDTFSLDDKMGDAEF 87
            +++TVYD      +DK    EF
Sbjct: 61 DVLEVTVYD------EDKDKKPEF 78

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 119

>gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

 Score = 59.0 bits (143), Expect = 7e-11
 Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 5/88 (5%)

Query: 5   MGLLRVHVLRGVNLAVRDVV---SSDPYVVIKMGKQL--KTRVVKNNVNPEWNEDLTLSI 59
           +G++ V +     L   D     + DPY+ +    ++  KTRV KN +NP WNE   + +
Sbjct: 435 IGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILL 494

Query: 60  SDSNLPIKLTVYDKDTFSLDDKMGDAEF 87
           +    P+ L++YD ++F  D  +G  + 
Sbjct: 495 NSFTDPLNLSLYDFNSFKSDKVVGSTQL 522

Length = 1227

>gnl|CDD|176009 cd04044, C2A_Tricalbin-like, C2 domain first repeat present in Tricalbin-like proteins

 Score = 54.5 bits (132), Expect = 3e-10
 Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 5/87 (5%)

Query: 6  GLLRVHVLRGVNLAVRDVVSS--DPYVVIKMGKQ---LKTRVVKNNVNPEWNEDLTLSIS 60
          G+L V +     L   D++    DPYV   +  +    +T+V K+  NP WNE   + ++
Sbjct: 2  GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVN 61

Query: 61 DSNLPIKLTVYDKDTFSLDDKMGDAEF 87
              P+ LTVYD +    D  +G AEF
Sbjct: 62 SLTEPLNLTVYDFNDKRKDKLIGTAEF 88

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 124

>gnl|CDD|175975 cd00276, C2B_Synaptotagmin, C2 domain second repeat present in Synaptotagmin

 Score = 54.1 bits (131), Expect = 4e-10
 Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 10/88 (11%)

Query: 6   GLLRVHVLRGVNL-AVRDVVSSDPYVVIKM---GKQL---KTRVVKNNVNPEWNEDLTLS 58
             L V VL+  NL        SDPYV + +   GK+L   KT V K  +NP +NE  +  
Sbjct: 14  ERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFD 73

Query: 59  ISDSNLP---IKLTVYDKDTFSLDDKMG 83
           +    L    + +TV DKD+   ++ +G
Sbjct: 74  VPAEQLEEVSLVITVVDKDSVGRNEVIG 101

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134

>gnl|CDD|175992 cd04026, C2_PKC_alpha_gamma, C2 domain in Protein Kinase C (PKC) alpha and gamma

 Score = 53.4 bits (129), Expect = 7e-10
 Identities = 35/107 (32%), Positives = 53/107 (49%), Gaps = 14/107 (13%)

Query: 6   GLLRVHVLRGVNLAVRDVVS-SDPYVVIKMG-------KQLKTRVVKNNVNPEWNEDLTL 57
             L V V    NL   D    SDPYV +K+        KQ KT+ +K  +NP WNE  T 
Sbjct: 13  NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQ-KTKTIKKTLNPVWNETFTF 71

Query: 58  SISDSNLPIKLT--VYDKDTFSLDDKMGDAEFYITPFLEALKMRLEG 102
            +  ++   +L+  V+D D  + +D MG   F ++   E +KM ++G
Sbjct: 72  DLKPADKDRRLSIEVWDWDRTTRNDFMGSLSFGVS---ELIKMPVDG 115

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 131

>gnl|CDD|176030 cd08384, C2B_Rabphilin_Doc2, C2 domain second repeat present in Rabphilin and Double C2 domain

 Score = 53.1 bits (128), Expect = 1e-09
 Identities = 38/107 (35%), Positives = 54/107 (50%), Gaps = 12/107 (11%)

Query: 6   GLLRVHVLRGVNLAVRDVV-SSDPYVVI-------KMGKQLKTRVVKNNVNPEWNEDLTL 57
             L V ++R VNLA  D    SDP+V +       K  K  KT+V K  +NPE+NE+   
Sbjct: 13  RGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKH-KTQVKKKTLNPEFNEEFFY 71

Query: 58  SISDSNLPIK---LTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLE 101
            I  S+L  K   +TV+DKD    +D +G  +  I    E L+  L+
Sbjct: 72  DIKHSDLAKKTLEITVWDKDIGKSNDYIGGLQLGINAKGERLRHWLD 118

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 133

>gnl|CDD|176032 cd08386, C2A_Synaptotagmin-7, C2A domain first repeat present in Synaptotagmin 7

 Score = 52.7 bits (127), Expect = 2e-09
 Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 17/92 (18%)

Query: 8   LRVHVLRGVNLAVRDVV-SSDPYVVIKM----GKQLKTRVVKNNVNPEWNEDLTLSISDS 62
           L + +L+ V L  +D   +SDP+V I +      +L+T+V + N+NP WNE         
Sbjct: 18  LTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLF----E 73

Query: 63  NLPIK--------LTVYDKDTFSLDDKMGDAE 86
             P +        L V D D FS +D +G+  
Sbjct: 74  GFPYEKLQQRVLYLQVLDYDRFSRNDPIGEVS 105

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125

>gnl|CDD|175985 cd04018, C2C_Ferlin, C2 domain third repeat in Ferlin

 Score = 53.0 bits (128), Expect = 2e-09
 Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 9/63 (14%)

Query: 27 DPYVVIKM-GKQLKTRVVKNNVNPEWNEDLTLSISDSNLP-----IKLTVYDKDTFSLDD 80
          DPYV +   G+++KT V KN+ NPEWNE +         P     IK+ + D D    DD
Sbjct: 36 DPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEM---FPPLCERIKIQIRDWDRVGNDD 92

Query: 81 KMG 83
           +G
Sbjct: 93 VIG 95

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 151

>gnl|CDD|176005 cd04040, C2D_Tricalbin-like, C2 domain fourth repeat present in Tricalbin-like proteins

 Score = 51.4 bits (124), Expect = 3e-09
 Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 4/83 (4%)

Query: 8  LRVHVLRGVNLAVRDVVS-SDPYVVIKM-GKQL-KTRVVKNNVNPEWNEDLTLSI-SDSN 63
          L V V+   NL   D    SDP+V   + G+++ KT+ +K  +NP WNE   + + S   
Sbjct: 1  LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVR 60

Query: 64 LPIKLTVYDKDTFSLDDKMGDAE 86
            +K+ VYD D    DD +G A 
Sbjct: 61 AVLKVEVYDWDRGGKDDLLGSAY 83

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 115

>gnl|CDD|175976 cd04009, C2B_Munc13-like, C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

 Score = 51.9 bits (125), Expect = 4e-09
 Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 14/92 (15%)

Query: 8   LRVHVLRGVNLAVRDVV-SSDPYVVI--------KMGKQLKTRVVKNNVNPEWNEDLTLS 58
           LRV +L   NL   D   SSDP+V +              KT+V K  + P ++E    +
Sbjct: 18  LRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFN 77

Query: 59  ISDSNLPIK-----LTVYDKDTFSLDDKMGDA 85
           +      ++      TV D D    +D  G+A
Sbjct: 78  VPPEQCSVEGALLLFTVKDYDLLGSNDFEGEA 109

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 133

>gnl|CDD|176011 cd04046, C2_Calpain, C2 domain present in Calpain proteins

 Score = 51.5 bits (124), Expect = 4e-09
 Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 3/85 (3%)

Query: 9  RVHVLRGVNLAVRDV-VSSDPYVVIKMGKQ-LKTRVVKNNVNPEWNEDLTLSISDSNLPI 66
          +VHV     L+ +D    +DPYV+IK   + +++ V K+ ++PE++            PI
Sbjct: 6  QVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKPRSPI 65

Query: 67 KLTVYDKDTFSLDDKMGDAEFYITP 91
          K+ V++ +    D+ +G A     P
Sbjct: 66 KIQVWNSNLLC-DEFLGQATLSADP 89

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126

>gnl|CDD|176070 cd08688, C2_KIAA0528-like, C2 domain found in the Human KIAA0528 cDNA clone

 Score = 50.8 bits (122), Expect = 5e-09
 Identities = 33/94 (35%), Positives = 49/94 (52%), Gaps = 7/94 (7%)

Query: 8  LRVHVLRGVNLAVRDVVS--SDPYVVIKMGK-QLKTRVVKNNVNPEWN-EDLTLSISDSN 63
          L+V V+   +L V D  S  +D +V +K G    KT VVK ++NP WN E     + D  
Sbjct: 1  LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEE 60

Query: 64 L---PIKLTVYDKDTFSLDDKMGDAEFYITPFLE 94
          L   P+++ V D DT+S +D +G     + P L 
Sbjct: 61 LQDEPLQIRVMDHDTYSANDAIGKVYIDLNPLLL 94

The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 110

>gnl|CDD|175987 cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat present in Synaptotagmin-like proteins 1-4

 Score = 51.9 bits (125), Expect = 5e-09
 Identities = 33/92 (35%), Positives = 45/92 (48%), Gaps = 13/92 (14%)

Query: 4   LMGLLRVHVLRGVNL-AVRDVVSSDPYVVI-------KMGKQLKTRVVKNNVNPEWNEDL 55
             G L V V    NL A++   +SD +V         K  KQ KT VVK +VNP WN   
Sbjct: 25  STGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQ-KTPVVKKSVNPVWNHTF 83

Query: 56  TLS-ISDSNLP---IKLTVYDKDTFSLDDKMG 83
               +S  +L    ++LTV+D D  S +D +G
Sbjct: 84  VYDGVSPEDLSQACLELTVWDHDKLSSNDFLG 115

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 162

>gnl|CDD|176056 cd08521, C2A_SLP, C2 domain first repeat present in Synaptotagmin-like proteins

 Score = 49.9 bits (120), Expect = 1e-08
 Identities = 34/97 (35%), Positives = 45/97 (46%), Gaps = 13/97 (13%)

Query: 2   ENLMGLLRVHVLRGVNLAVRDVV--SSDPYVVI-------KMGKQLKTRVVKNNVNPEWN 52
               G L VH+    NLA  D     S+PYV +       K  K  KT V KN  NP +N
Sbjct: 10  NYKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSK-RKTSVKKNTTNPVFN 68

Query: 53  EDLTLSISDSNL---PIKLTVYDKDTFSLDDKMGDAE 86
           E L   IS S L    ++L+V+  D F  +  +G+ E
Sbjct: 69  ETLKYHISKSQLETRTLQLSVWHHDRFGRNTFLGEVE 105

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|175993 cd04027, C2B_Munc13, C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

 Score = 49.1 bits (117), Expect = 4e-08
 Identities = 21/51 (41%), Positives = 33/51 (64%), Gaps = 1/51 (1%)

Query: 25 SSDPYVVIKMGKQLK-TRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKD 74
          +SDPYV +++GK  K T+ +  N+NP WNE       +S+  IK+ V+D+D
Sbjct: 21 TSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSSDRIKVRVWDED 71

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 127

>gnl|CDD|175991 cd04025, C2B_RasA1_RasA4, C2 domain second repeat present in RasA1 and RasA4

 Score = 48.6 bits (116), Expect = 4e-08
 Identities = 32/92 (34%), Positives = 50/92 (54%), Gaps = 3/92 (3%)

Query: 8  LRVHVLRGVNLAVRDVV-SSDPYVVIKM-GKQLKTRVVKNNVNPEWNEDLTLSISD-SNL 64
          LR HVL   +LA +D   +SDP+V +   G+ L+T VVK +  P WNE     + + ++ 
Sbjct: 2  LRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADS 61

Query: 65 PIKLTVYDKDTFSLDDKMGDAEFYITPFLEAL 96
          P+ + V+D D  S +D +G   F I    +A 
Sbjct: 62 PLSVEVWDWDLVSKNDFLGKVVFSIQTLQQAK 93

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 123

>gnl|CDD|176031 cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

 Score = 48.8 bits (117), Expect = 5e-08
 Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 8/87 (9%)

Query: 6   GLLRVHVLRGVNLAVRDVV-SSDPYVVI----KMGKQLKTRVVKNNVNPEWNEDLTLSIS 60
             L V +++  +L   D+  +SDPYV +       K+ +T+V +  +NP +NE  T  + 
Sbjct: 16  NQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVP 75

Query: 61  DSNL---PIKLTVYDKDTFSLDDKMGD 84
            S L    +  +VYD D FS  D +G+
Sbjct: 76  YSELGNKTLVFSVYDFDRFSKHDLIGE 102

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124

>gnl|CDD|175998 cd04032, C2_Perforin, C2 domain of Perforin

 Score = 48.8 bits (117), Expect = 5e-08
 Identities = 30/86 (34%), Positives = 39/86 (45%), Gaps = 11/86 (12%)

Query: 5   MGLLRVHVLRGVNLAVRDVVSS-DPYVVIKMGKQLK-TRVVKNNVNPEWNEDL-----TL 57
           +  L V VLR   L   D  +S D YV +  G Q K T V+ NN NP WN         L
Sbjct: 27  LATLTVTVLRATGLW-GDYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVEL 85

Query: 58  SISDSNLPIKLTVYDKDTFSLDDKMG 83
           S       ++  V+D+D    DD +G
Sbjct: 86  SPGG---KLRFEVWDRDNGWDDDLLG 108

Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 127

>gnl|CDD|176022 cd08376, C2B_MCTP_PRT, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 48.0 bits (115), Expect = 7e-08
 Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 3/80 (3%)

Query: 7  LLRVHVLRGVNLAVRDVVS-SDPYVVIKMGKQ-LKTRVVKNNVNPEWNEDLTLSI-SDSN 63
          ++ + ++ G NL   D    SDPYV  ++G +  K++V    +NP+W E   L +  D +
Sbjct: 1  VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQS 60

Query: 64 LPIKLTVYDKDTFSLDDKMG 83
            +++ V+DKDT   D+ +G
Sbjct: 61 QILEIEVWDKDTGKKDEFIG 80

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 116

>gnl|CDD|176033 cd08387, C2A_Synaptotagmin-8, C2A domain first repeat present in Synaptotagmin 8

 Score = 47.8 bits (114), Expect = 1e-07
 Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 8/90 (8%)

Query: 5   MGLLRVHVLRGVNLAVRDVVS-SDPYVVIKM----GKQLKTRVVKNNVNPEWNEDLTLSI 59
           MG+L V +++  NL  RD    +DPY  +++        ++++ K  +NPE++E     +
Sbjct: 15  MGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEV 74

Query: 60  SDSNLP---IKLTVYDKDTFSLDDKMGDAE 86
               LP   +++ +YD D FS D+ +G  E
Sbjct: 75  PPQELPKRTLEVLLYDFDQFSRDECIGVVE 104

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124

>gnl|CDD|176039 cd08393, C2A_SLP-1_2, C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2

 Score = 46.7 bits (111), Expect = 3e-07
 Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 13/91 (14%)

Query: 8   LRVHVLRGVNLAVRDV--VSSDPYVVI-------KMGKQLKTRVVKNNVNPEWNEDLTLS 58
           L VHV++  +LA  D     SDPYV           GK+ KT V K  +NP +NE L   
Sbjct: 17  LHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKR-KTSVKKKTLNPVFNETLRYK 75

Query: 59  ISDSNLPIK---LTVYDKDTFSLDDKMGDAE 86
           +    LP +   L+V+ +D+   +  +G+ E
Sbjct: 76  VEREELPTRVLNLSVWHRDSLGRNSFLGEVE 106

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125

>gnl|CDD|176012 cd04047, C2B_Copine, C2 domain second repeat in Copine

 Score = 46.0 bits (110), Expect = 3e-07
 Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 14/88 (15%)

Query: 13 LRGVNLAVRDVVS-SDPYVVI-KM---GKQL---KTRVVKNNVNPEWNEDLTLSIS---- 60
            G  L  +D    SDP++ I +    G  +   +T V+KN +NP W    T+ +     
Sbjct: 7  FSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWKP-FTIPLQKLCN 65

Query: 61 -DSNLPIKLTVYDKDTFSLDDKMGDAEF 87
           D + PIK+ VYD D+    D +G+ E 
Sbjct: 66 GDYDRPIKIEVYDYDSSGKHDLIGEFET 93

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 110

>gnl|CDD|176028 cd08382, C2_Smurf-like, C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins

 Score = 45.8 bits (109), Expect = 5e-07
 Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 8/71 (11%)

Query: 8  LRVHVLRGVNLAVRDVVSS-DPYVVIKM--GKQLKTRVVKNNVNPEWNE--DLTLSISDS 62
          +R+ VL    LA RD+    DP+ VI +  G+   T V K  ++P+WNE  DLT+  S  
Sbjct: 2  VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGPSSI 61

Query: 63 NLPIKLTVYDK 73
             I + V+D+
Sbjct: 62 ---ITIQVFDQ 69

A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have type-II topology. Length = 123

>gnl|CDD|176018 cd04054, C2A_Rasal1_RasA4, C2 domain first repeat present in RasA1 and RasA4

 Score = 46.0 bits (109), Expect = 5e-07
 Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 3/79 (3%)

Query: 8  LRVHVLRGVNLAVRDVV-SSDPYVVIKMGKQ--LKTRVVKNNVNPEWNEDLTLSISDSNL 64
          L + ++ G NL  +D+  SSDPY ++K+  +  ++T  V   +NP W E+ T+ +     
Sbjct: 2  LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGFH 61

Query: 65 PIKLTVYDKDTFSLDDKMG 83
           +   V D+DT S DD +G
Sbjct: 62 TVSFYVLDEDTLSRDDVIG 80

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 121

>gnl|CDD|175989 cd04022, C2A_MCTP_PRT_plant, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 45.8 bits (109), Expect = 5e-07
 Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 6/76 (7%)

Query: 8  LRVHVLRGVNLAVRDVV-SSDPYVVIKM-GKQLKTRVVKNNVNPEWNEDLTLSISD---- 61
          L V V+   +L  +D   SS  YV +   G++ +TR    ++NP WNE L  ++SD    
Sbjct: 2  LVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRL 61

Query: 62 SNLPIKLTVYDKDTFS 77
          SNL +++ VY+     
Sbjct: 62 SNLVLEVYVYNDRRSG 77

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127

>gnl|CDD|176008 cd04043, C2_Munc13_fungal, C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

 Score = 45.7 bits (109), Expect = 7e-07
 Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 6/88 (6%)

Query: 10 VHVLRGVNL-AVRDVVSSDPYVVI---KMGKQL-KTRVVKNNVNPEWNEDLTLSISDSN- 63
          + ++R  NL A      SDPYV +      +++ KTR + + +NP W+E+  L +     
Sbjct: 5  IRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEP 64

Query: 64 LPIKLTVYDKDTFSLDDKMGDAEFYITP 91
          L I  TV+D+      D  G A   + P
Sbjct: 65 LWISATVWDRSFVGKHDLCGRASLKLDP 92

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 126

>gnl|CDD|176010 cd04045, C2C_Tricalbin-like, C2 domain third repeat present in Tricalbin-like proteins

 Score = 45.3 bits (108), Expect = 7e-07
 Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 9/73 (12%)

Query: 6  GLLRVHVLRGVNL----AVRDVVSSDPYVVIKMGKQLK--TRVVKNNVNPEWNEDLTLSI 59
          G+LR+H+ +  +L     V  +   DPYV + +   +K  T  + N +NP W+E L + +
Sbjct: 1  GVLRLHIRKANDLKNLEGVGKI---DPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPV 57

Query: 60 SDSNLPIKLTVYD 72
          +  N  I L V D
Sbjct: 58 TSPNQKITLEVMD 70

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 120

>gnl|CDD|176025 cd08379, C2D_MCTP_PRT_plant, C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 45.1 bits (107), Expect = 9e-07
 Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 8/88 (9%)

Query: 25  SSDPYVVIKMG-KQLKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYD-KDTFSLDDKM 82
           S+D Y V K G K ++TR V+++ NP WNE  T  + D    + + V+D   +   +   
Sbjct: 23  STDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDPCTVLTVGVFDNSQSHWKEAVQ 82

Query: 83  GDAEFYITPFLEALKMRLEGLPNGTIVT 110
            D        +  +++RL  L +  +  
Sbjct: 83  PDV------LIGKVRIRLSTLEDDRVYA 104

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 126

>gnl|CDD|176050 cd08405, C2B_Synaptotagmin-7, C2 domain second repeat present in Synaptotagmin 7

 Score = 45.1 bits (107), Expect = 1e-06
 Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 10/88 (11%)

Query: 6   GLLRVHVLRGVNLAVRDVV-SSDPYVVIKM---GKQL---KTRVVKNNVNPEWNEDLTLS 58
             + V++++  NL   D+  +SDPYV + +    K++   KT + K  +NP +NE    +
Sbjct: 15  NRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFN 74

Query: 59  ISDSNL---PIKLTVYDKDTFSLDDKMG 83
           I    L    + +TV DKD  S +D +G
Sbjct: 75  IPLERLRETTLIITVMDKDRLSRNDLIG 102

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|176057 cd08675, C2B_RasGAP, C2 domain second repeat of Ras GTPase activating proteins (GAPs)

 Score = 45.1 bits (107), Expect = 1e-06
 Identities = 25/152 (16%), Positives = 46/152 (30%), Gaps = 53/152 (34%)

Query: 8   LRVHVLRGVNLAVRDVVSSDPYVVIKM-----GKQLKTRVVKNNVNPEWNEDLTLSISDS 62
           L V VL   +LA++   + DP+  + +         +T+V K   NP ++E         
Sbjct: 1   LSVRVLECRDLALKSNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDE--------- 51

Query: 63  NLPIKLTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAE 122
                        F  +                    L    +    +      +   +E
Sbjct: 52  ------------AFYFE--------------------LTIGFSYEKKSFKVEEEDLEKSE 79

Query: 123 ESHIVWTDGKLVQNLFLRLRNVEVGEVKIQLE 154
               +W    +  + FL       GEV+I L+
Sbjct: 80  LRVELWHASMVSGDDFL-------GEVRIPLQ 104

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 137

>gnl|CDD|175974 cd00275, C2_PLC_like, C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

 Score = 44.5 bits (106), Expect = 2e-06
 Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 9/60 (15%)

Query: 27 DPYVVIKM-------GKQLKTRVVKNN-VNPEWNEDLTLSISDSNLP-IKLTVYDKDTFS 77
          DPYV +++         + KT+VVKNN  NP WNE     ++   L  ++  VYD+D+  
Sbjct: 26 DPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDEDSGD 85

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-II topology. Length = 128

>gnl|CDD|175997 cd04031, C2A_RIM1alpha, C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

 Score = 44.5 bits (106), Expect = 2e-06
 Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 11/87 (12%)

Query: 8   LRVHVLRGVNLAVRDVVS-SDPYVVIKM------GKQLKTRVVKNNVNPEWNEDLTLS-I 59
           L V VL+  +L  RD  S  +PYV + +        + +T+ VK  +NPEWN+    S +
Sbjct: 18  LIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNV 77

Query: 60  SDSNL---PIKLTVYDKDTFSLDDKMG 83
               L    +++TV+D D    +D +G
Sbjct: 78  RRETLKERTLEVTVWDYDRDGENDFLG 104

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology and do not bind Ca2+. Length = 125

>gnl|CDD|176000 cd04035, C2A_Rabphilin_Doc2, C2 domain first repeat present in Rabphilin and Double C2 domain

 Score = 44.2 bits (105), Expect = 2e-06
 Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 12/91 (13%)

Query: 8   LRVHVLRGVNLAVRDVV-SSDPYVVI------KMGKQLKTRVVKNNVNPEWNEDLT-LSI 59
           L   ++R   L   D    SDPYV +          +L+T+ V    NPE+NE LT   I
Sbjct: 17  LHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGI 76

Query: 60  SDSNL---PIKLTVYDKDTFSLDDKMGDAEF 87
           ++ ++    ++L V D+D F  +D +G+   
Sbjct: 77  TEEDIQRKTLRLLVLDEDRFG-NDFLGETRI 106

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|175978 cd04011, C2B_Ferlin, C2 domain second repeat in Ferlin

 Score = 43.3 bits (103), Expect = 3e-06
 Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 13/87 (14%)

Query: 9  RVHVLRGVNLAVRDVVSS--DPYVVIKMGKQLK-TRVVKNNVNPEWNEDLTLSISDSNL- 64
          RV V+       R +V    DP V +++G Q K T V K    P +NE    +  +S   
Sbjct: 7  RVRVIEA-----RQLVGGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDE 61

Query: 65 ----PIKLTVYDKDTFSLDDKMGDAEF 87
               IK++VYD  +   D  +G  + 
Sbjct: 62 LFDKIIKISVYDSRSLRSDTLIGSFKL 88

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111

>gnl|CDD|176013 cd04048, C2A_Copine, C2 domain first repeat in Copine

 Score = 43.3 bits (103), Expect = 5e-06
 Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 20/88 (22%)

Query: 17 NLAVRDVVS-SDPYVVIKM----GKQL----KTRVVKNNVNPEWNEDLTLSISDSNL--- 64
          NL  +DV+S SDP+VV+ +      Q     +T V+KNN+NP++    T+   D      
Sbjct: 11 NLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTV---DYYFEEV 67

Query: 65 -PIKLTVYDKDTFSLDDK----MGDAEF 87
            ++  VYD D+ S D      +G+AE 
Sbjct: 68 QKLRFEVYDVDSKSKDLSDHDFLGEAEC 95

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 120

>gnl|CDD|178585 PLN03008, PLN03008, Phospholipase D delta

 Score = 44.7 bits (105), Expect = 8e-06
 Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 21  RDVVSSDPYV--VIKMGKQLKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTF 76
           R V++SDPYV  V+      +TRV+KN+  P W+E   +SI+     ++  V D D F
Sbjct: 72  RKVITSDPYVTVVVPQATLARTRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVF 129

Length = 868

>gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

 Score = 44.0 bits (104), Expect = 1e-05
 Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 4/87 (4%)

Query: 5    MGLLRVHVLRGVNLAVRDVVS-SDPYVVIKMG--KQLKTRVVKNNVNPEWNEDLTLSI-S 60
             G L + +  G NL   D    SDP+V + +      KT+VVK  +NP WNE+ T+ + +
Sbjct: 1039 SGYLTIMLRSGENLPSSDENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLN 1098

Query: 61   DSNLPIKLTVYDKDTFSLDDKMGDAEF 87
                 + + V D D+   +D +G AE 
Sbjct: 1099 RVKDVLTINVNDWDSGEKNDLLGTAEI 1125

Length = 1227

>gnl|CDD|175986 cd04019, C2C_MCTP_PRT_plant, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 42.7 bits (101), Expect = 1e-05
 Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 13/57 (22%)

Query: 8  LRVHVLRGVNLAVRDVVSSDP------YVVIKMGKQ-LKTRVVKN-NVNPEWNEDLT 56
          LRV V+       +D+V SD       +V  ++G Q L+TR  +  N NP WNE+L 
Sbjct: 2  LRVTVI-----EAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELM 53

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 150

>gnl|CDD|176036 cd08390, C2A_Synaptotagmin-15-17, C2A domain first repeat present in Synaptotagmins 15 and 17

 Score = 41.9 bits (99), Expect = 2e-05
 Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 9/89 (10%)

Query: 8   LRVHVLRGVNLAVR--DVVSSDPYVVIKM----GKQLKTRVVKNNVNPEWNEDLTLSISD 61
           L V +++  NL  R  DV   DP+V + +     + L+++V +   NP ++E     +S 
Sbjct: 16  LTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSF 75

Query: 62  SNLP---IKLTVYDKDTFSLDDKMGDAEF 87
             L    ++L+VYD D FS    +G   F
Sbjct: 76  KELQRRTLRLSVYDVDRFSRHCIIGHVLF 104

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|176047 cd08402, C2B_Synaptotagmin-1, C2 domain second repeat present in Synaptotagmin 1

 Score = 41.6 bits (98), Expect = 3e-05
 Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 10/88 (11%)

Query: 6   GLLRVHVLRGVNLAVRDVV-SSDPYVVIKM---GKQL---KTRVVKNNVNPEWNEDLTLS 58
           G L V +L   NL   DV   SDPYV I +   GK+L   KT + K  +NP +NE  +  
Sbjct: 15  GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFE 74

Query: 59  ISD---SNLPIKLTVYDKDTFSLDDKMG 83
           +       + + +TV D D    +D +G
Sbjct: 75  VPFEQIQKVHLIVTVLDYDRIGKNDPIG 102

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|175982 cd04015, C2_plant_PLD, C2 domain present in plant phospholipase D (PLD)

 Score = 41.9 bits (99), Expect = 3e-05
 Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 2/67 (2%)

Query: 12  VLRGVNLAVRDVVSSDPYVVIKMGKQL--KTRVVKNNVNPEWNEDLTLSISDSNLPIKLT 69
           + R  +      ++SDPY  + +      +TRV++N+ NP WNE   +  +     ++ T
Sbjct: 44  LKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVWNESFHIYCAHYASHVEFT 103

Query: 70  VYDKDTF 76
           V D D  
Sbjct: 104 VKDNDVV 110

PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 158

>gnl|CDD|175995 cd04029, C2A_SLP-4_5, C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5

 Score = 40.9 bits (96), Expect = 3e-05
 Identities = 32/97 (32%), Positives = 46/97 (47%), Gaps = 13/97 (13%)

Query: 2   ENLMGLLRVHVLRGVNLAVRDVVS--SDPYVVI-------KMGKQLKTRVVKNNVNPEWN 52
           +     L VHV    NLA  D     S+PYV         +  K+ KT + +N  NP +N
Sbjct: 11  DYKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKR-KTSIKRNTTNPVYN 69

Query: 53  EDLTLSISDSNL---PIKLTVYDKDTFSLDDKMGDAE 86
           E L  SIS S L    ++L+V+  D F  +  +G+ E
Sbjct: 70  ETLKYSISHSQLETRTLQLSVWHYDRFGRNTFLGEVE 106

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125

>gnl|CDD|176060 cd08678, C2_C21orf25-like, C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein

 Score = 40.0 bits (94), Expect = 8e-05
 Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 6/78 (7%)

Query: 25 SSDPYVVIKMG---KQLKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSLDDK 81
          SS+PY V++M    ++ ++   KN  NP W+E     +S ++  +   VYD    S    
Sbjct: 17 SSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNSKELLFEVYDNGKKSDSKF 76

Query: 82 MGDAEFYITPFLEALKMR 99
          +G A   I PF E  K  
Sbjct: 77 LGLA---IVPFDELRKNP 91

The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126

>gnl|CDD|176055 cd08410, C2B_Synaptotagmin-17, C2 domain second repeat present in Synaptotagmin 17

 Score = 39.9 bits (93), Expect = 1e-04
 Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 10/88 (11%)

Query: 6   GLLRVHVLRGVNLAVRDVVS-SDPYVVI------KMGKQLKTRVVKNNVNPEWNEDLTLS 58
           G L V ++R   L   D+   SDP+V I      K+ K  KT  ++  ++P +NE  +  
Sbjct: 14  GRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFK 73

Query: 59  ISDS---NLPIKLTVYDKDTFSLDDKMG 83
           +      N+ +  TVY  +  S +D +G
Sbjct: 74  VPQEELENVSLVFTVYGHNVKSSNDFIG 101

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 135

>gnl|CDD|176048 cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

 Score = 39.4 bits (92), Expect = 1e-04
 Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 12/79 (15%)

Query: 6  GLLRVHVLRGVNLAVRDVVS-SDPYVVIKM---GKQLK---TRVVKNNVNPEWNEDLTL- 57
          G L + +++  NL   D+   SDPYV + +   G++LK   T V KN +NP +NE L   
Sbjct: 14 GRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFD 73

Query: 58 ----SISDSNLPIKLTVYD 72
              ++ + +L I +  YD
Sbjct: 74 VPPENVDNVSLIIAVVDYD 92

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134

>gnl|CDD|175984 cd04017, C2D_Ferlin, C2 domain fourth repeat in Ferlin

 Score = 39.1 bits (92), Expect = 2e-04
 Identities = 21/88 (23%), Positives = 44/88 (50%), Gaps = 12/88 (13%)

Query: 8  LRVHVLRGVNLAVRDV-VSSDPYV-VIKMGKQLKTRVVKNNVNPEWNEDLT---LSISDS 62
          LR ++ +  +L   D    SDP+  V  + +  +T V+K  ++P W++ L    + +  S
Sbjct: 3  LRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGS 62

Query: 63 ------NLP-IKLTVYDKDTFSLDDKMG 83
                N P + + ++D+D+   D+ +G
Sbjct: 63 PEEIAQNPPLVVVELFDQDSVGKDEFLG 90

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 135

>gnl|CDD|176034 cd08388, C2A_Synaptotagmin-4-11, C2A domain first repeat present in Synaptotagmins 4 and 11

 Score = 38.5 bits (90), Expect = 2e-04
 Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 10/90 (11%)

Query: 8   LRVHVLRGVNLAVRD--VVSSDPYVVIKM----GKQLKTRVVKNNVNPEWNEDLTL-SIS 60
           L V+++   +L   D    +SDPYV +++      ++KTRV++   NP ++E  T   I 
Sbjct: 18  LLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIP 77

Query: 61  DSNLP---IKLTVYDKDTFSLDDKMGDAEF 87
            + L    +   V   D +S DD +G+   
Sbjct: 78  YNQLQDLSLHFAVLSFDRYSRDDVIGEVVC 107

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128

>gnl|CDD|176027 cd08381, C2B_PI3K_class_II, C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

 Score = 38.0 bits (89), Expect = 4e-04
 Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 12/89 (13%)

Query: 6   GLLRVHVLRGVNLAVRDVVSSDPYVVI-------KMGKQLKTRVVKNNVNPEWNEDLTLS 58
           G L V V+   NL + D    DPYV         K  K+ KT+VV+   NP +NE L   
Sbjct: 13  GTLFVMVMHAKNLPLLDGSDPDPYVKTYLLPDPQKTTKR-KTKVVRKTRNPTFNEMLVYD 71

Query: 59  -ISDSNLP---IKLTVYDKDTFSLDDKMG 83
            +   +L    ++++V+  D+   ++ +G
Sbjct: 72  GLPVEDLQQRVLQVSVWSHDSLVENEFLG 100

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 122

>gnl|CDD|175988 cd04021, C2_E3_ubiquitin_ligase, C2 domain present in E3 ubiquitin ligase

 Score = 38.0 bits (89), Expect = 4e-04
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 3/77 (3%)

Query: 27  DPYVVIKMGKQL--KTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSLDDKMGD 84
           DPYV + +  Q   KT V K   NP+WNE  T+ ++  +  ++  V+   T   D  +G+
Sbjct: 23  DPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVTPQST-LEFKVWSHHTLKADVLLGE 81

Query: 85  AEFYITPFLEALKMRLE 101
           A   ++  L+    +LE
Sbjct: 82  ASLDLSDILKNHNGKLE 98

E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125

>gnl|CDD|176026 cd08380, C2_PI3K_like, C2 domain present in phosphatidylinositol 3-kinases (PI3Ks)

 Score = 38.1 bits (89), Expect = 5e-04
 Identities = 19/83 (22%), Positives = 34/83 (40%), Gaps = 11/83 (13%)

Query: 4  LMGLLRVHVLRGVNLAVRDVVSSDPYVVIKM-------GKQLKTRVVKNNVNPEWNEDLT 56
          +   LR+ +    N+ + D      YV +++            T+ V  + +  WNE LT
Sbjct: 6  INFNLRIKIHGITNINLLDSEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLT 65

Query: 57 LSISDSNLP----IKLTVYDKDT 75
            I  S+LP    + L++Y    
Sbjct: 66 FDILISDLPREARLCLSIYAVSE 88

C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains members with the first C2 repeat, C2A, and a type-I topology, as well as some with a single C2 repeat. Length = 156

>gnl|CDD|175996 cd04030, C2C_KIAA1228, C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

 Score = 37.3 bits (87), Expect = 8e-04
 Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 9/66 (13%)

Query: 8  LRVHVLRGVNL-AVRDVVSSDPYVVIKM-------GKQLKTRVVKNNVNPEWNEDLTLSI 59
          L V V +  NL         DPYV + +        ++ KT V K+N+NP ++E     +
Sbjct: 18 LIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRR-KTSVKKDNLNPVFDETFEFPV 76

Query: 60 SDSNLP 65
          S   L 
Sbjct: 77 SLEELK 82

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 127

>gnl|CDD|176064 cd08682, C2_Rab11-FIP_classI, C2 domain found in Rab11-family interacting proteins (FIP) class I

 Score = 36.7 bits (85), Expect = 0.001
 Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 8/86 (9%)

Query: 9  RVHVLRGVNLAVRDVV-SSDPYVVIKMGKQ-LKTRVVKNNVNPEWNEDLTLSISDSNLP- 65
          +V VL+   L  +    ++D YV+I++GK+   T V +   +P W E+ +  +       
Sbjct: 2  QVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGN 61

Query: 66 -----IKLTVYDKDTFSLDDKMGDAE 86
               ++LTV  ++   LD  +G   
Sbjct: 62 GNRATLQLTVMHRNLLGLDKFLGQVS 87

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The members in this CD are class I FIPs. The exact function of the Rab11 and FIP interaction is unknown, but there is speculation that it involves the role of forming a targeting complex that recruits a group of proteins involved in membrane transport to organelles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126

>gnl|CDD|176024 cd08378, C2B_MCTP_PRT_plant, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 35.8 bits (83), Expect = 0.002
 Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 10/84 (11%)

Query: 8  LRVHVLRGVNLAVRDVVSSDPYVVIKMGK-QLKTRVVKNNVNPEWNEDLTLSISDSNLP- 65
          L V V++   L      S+DP V +K+G  +  T+ ++   NPEWN+    + S   L  
Sbjct: 2  LYVRVVKARGLPA---NSNDPVVEVKLGNYKGSTKAIERTSNPEWNQ--VFAFSKDRLQG 56

Query: 66 --IKLTVYDKDTFSLDDKMGDAEF 87
            ++++V+DKD  + DD +G   F
Sbjct: 57 STLEVSVWDKDK-AKDDFLGGVCF 79

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 121

>gnl|CDD|176049 cd08404, C2B_Synaptotagmin-4, C2 domain second repeat present in Synaptotagmin 4

 Score = 35.9 bits (83), Expect = 0.002
 Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 10/89 (11%)

Query: 8   LRVHVLRGVNLAVRDVV-SSDPYVVIKM--GKQL----KTRVVKNNVNPEWNEDLTLSIS 60
           L V VL+  +L   DV   +DPYV + +  GK+     KT V K  +NP +NE     I 
Sbjct: 17  LTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIP 76

Query: 61  DSNLP---IKLTVYDKDTFSLDDKMGDAE 86
              L    ++  V D D  + ++ +G   
Sbjct: 77  SEELEDISVEFLVLDSDRVTKNEVIGRLV 105

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|176017 cd04052, C2B_Tricalbin-like, C2 domain second repeat present in Tricalbin-like proteins

 Score = 34.9 bits (81), Expect = 0.004
 Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 3/49 (6%)

Query: 28 PYVVIKMGKQL--KTRVVKNNVNPEWNEDLTLSISD-SNLPIKLTVYDK 73
          PY  + +  +L   TRV K   NP WN      ++D     + + V D 
Sbjct: 15 PYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDD 63

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	164
KOG1030	168	consensus Predicted Ca2+-dependent phospholipid-bi	100.0
cd04038	145	C2_ArfGAP C2 domain present in Arf GTPase Activati	100.0
cd04016	121	C2_Tollip C2 domain present in Toll-interacting pr	99.95
cd04042	121	C2A_MCTP_PRT C2 domain first repeat found in Multi	99.93
cd08682	126	C2_Rab11-FIP_classI C2 domain found in Rab11-famil	99.93
cd08375	136	C2_Intersectin C2 domain present in Intersectin. A	99.93
cd08376	116	C2B_MCTP_PRT C2 domain second repeat found in Mult	99.93
cd08391	121	C2A_C2C_Synaptotagmin_like C2 domain first and thi	99.93
cd08681	118	C2_fungal_Inn1p-like C2 domain found in fungal Ing	99.92
cd08401	121	C2A_RasA2_RasA3 C2 domain first repeat present in	99.92
cd08379	126	C2D_MCTP_PRT_plant C2 domain fourth repeat found i	99.92
cd08678	126	C2_C21orf25-like C2 domain found in the Human chro	99.91
cd04024	128	C2A_Synaptotagmin-like C2 domain first repeat pres	99.91
cd04022	127	C2A_MCTP_PRT_plant C2 domain first repeat found in	99.91
cd04036	119	C2_cPLA2 C2 domain present in cytosolic PhosphoLip	99.91
cd04044	124	C2A_Tricalbin-like C2 domain first repeat present	99.91
cd08377	119	C2C_MCTP_PRT C2 domain third repeat found in Multi	99.91
cd04054	121	C2A_Rasal1_RasA4 C2 domain first repeat present in	99.9
cd04019	150	C2C_MCTP_PRT_plant C2 domain third repeat found in	99.9
cd08400	126	C2_Ras_p21A1 C2 domain present in RAS p21 protein	99.9
cd04015	158	C2_plant_PLD C2 domain present in plant phospholip	99.9
cd04014	132	C2_PKC_epsilon C2 domain in Protein Kinase C (PKC)	99.9
cd04046	126	C2_Calpain C2 domain present in Calpain proteins.	99.89
cd04025	123	C2B_RasA1_RasA4 C2 domain second repeat present in	99.89
cd04039	108	C2_PSD C2 domain present in Phosphatidylserine dec	99.89
cd04033	133	C2_NEDD4_NEDD4L C2 domain present in the Human neu	99.89
cd08373	127	C2A_Ferlin C2 domain first repeat in Ferlin. Ferli	99.89
cd08378	121	C2B_MCTP_PRT_plant C2 domain second repeat found i	99.88
cd08395	120	C2C_Munc13 C2 domain third repeat in Munc13 (mamma	99.88
cd04028	146	C2B_RIM1alpha C2 domain second repeat contained in	99.88
cd08381	122	C2B_PI3K_class_II C2 domain second repeat present	99.88
cd08677	118	C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a	99.88
cd04043	126	C2_Munc13_fungal C2 domain in Munc13 (mammalian un	99.88
cd04050	105	C2B_Synaptotagmin-like C2 domain second repeat pre	99.87
cd04029	125	C2A_SLP-4_5 C2 domain first repeat present in Syna	99.87
cd04052	111	C2B_Tricalbin-like C2 domain second repeat present	99.87
cd04027	127	C2B_Munc13 C2 domain second repeat in Munc13 (mamm	99.87
cd08394	127	C2A_Munc13 C2 domain first repeat in Munc13 (mamma	99.87
cd08387	124	C2A_Synaptotagmin-8 C2A domain first repeat presen	99.86
cd04041	111	C2A_fungal C2 domain first repeat; fungal group. C	99.86
cd08382	123	C2_Smurf-like C2 domain present in Smad ubiquitina	99.86
cd04017	135	C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl	99.86
cd04049	124	C2_putative_Elicitor-responsive_gene C2 domain pre	99.86
cd04045	120	C2C_Tricalbin-like C2 domain third repeat present	99.86
cd08688	110	C2_KIAA0528-like C2 domain found in the Human KIAA	99.86
cd08385	124	C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe	99.86
cd08393	125	C2A_SLP-1_2 C2 domain first repeat present in Syna	99.85
cd04010	148	C2B_RasA3 C2 domain second repeat present in RAS p	99.85
cd04032	127	C2_Perforin C2 domain of Perforin. Perforin contai	99.85
cd08685	119	C2_RGS-like C2 domain of the Regulator Of G-Protei	99.84
cd08392	128	C2A_SLP-3 C2 domain first repeat present in Synapt	99.84
cd04031	125	C2A_RIM1alpha C2 domain first repeat contained in	99.84
cd04013	146	C2_SynGAP_like C2 domain present in Ras GTPase act	99.84
cd04051	125	C2_SRC2_like C2 domain present in Soybean genes Re	99.83
cd04030	127	C2C_KIAA1228 C2 domain third repeat present in unc	99.83
cd04020	162	C2B_SLP_1-2-3-4 C2 domain second repeat present in	99.83
cd08680	124	C2_Kibra C2 domain found in Human protein Kibra. K	99.83
cd04018	151	C2C_Ferlin C2 domain third repeat in Ferlin. Ferli	99.83
cd04011	111	C2B_Ferlin C2 domain second repeat in Ferlin. Ferl	99.83
cd08388	128	C2A_Synaptotagmin-4-11 C2A domain first repeat pre	99.83
cd04021	125	C2_E3_ubiquitin_ligase C2 domain present in E3 ubi	99.83
cd04040	115	C2D_Tricalbin-like C2 domain fourth repeat present	99.82
cd08390	123	C2A_Synaptotagmin-15-17 C2A domain first repeat pr	99.82
cd08521	123	C2A_SLP C2 domain first repeat present in Synaptot	99.82
cd08386	125	C2A_Synaptotagmin-7 C2A domain first repeat presen	99.82
cd08383	117	C2A_RasGAP C2 domain (first repeat) of Ras GTPase	99.82
cd08676	153	C2A_Munc13-like C2 domain first repeat in Munc13 (	99.82
cd08389	124	C2A_Synaptotagmin-14_16 C2A domain first repeat pr	99.81
cd04009	133	C2B_Munc13-like C2 domain second repeat in Munc13	99.81
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.81
PLN03008	868	Phospholipase D delta	99.81
cd08690	155	C2_Freud-1 C2 domain found in 5' repressor element	99.81
cd04037	124	C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli	99.81
cd04026	131	C2_PKC_alpha_gamma C2 domain in Protein Kinase C (	99.81
cd08384	133	C2B_Rabphilin_Doc2 C2 domain second repeat present	99.8
cd08675	137	C2B_RasGAP C2 domain second repeat of Ras GTPase a	99.8
cd08691	137	C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li	99.8
cd08406	136	C2B_Synaptotagmin-12 C2 domain second repeat prese	99.79
cd08408	138	C2B_Synaptotagmin-14_16 C2 domain second repeat pr	99.79
cd08407	138	C2B_Synaptotagmin-13 C2 domain second repeat prese	99.79
cd08404	136	C2B_Synaptotagmin-4 C2 domain second repeat presen	99.79
KOG0696	683	consensus Serine/threonine protein kinase [Signal	99.79
cd08692	135	C2B_Tac2-N C2 domain second repeat found in Tac2-N	99.79
cd08686	118	C2_ABR C2 domain in the Active BCR (Breakpoint clu	99.78
cd00275	128	C2_PLC_like C2 domain present in Phosphoinositide-	99.78
cd08402	136	C2B_Synaptotagmin-1 C2 domain second repeat presen	99.77
cd08410	135	C2B_Synaptotagmin-17 C2 domain second repeat prese	99.77
cd08405	136	C2B_Synaptotagmin-7 C2 domain second repeat presen	99.77
cd08403	134	C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe	99.76
KOG1028	421	consensus Ca2+-dependent phospholipid-binding prot	99.76
cd00276	134	C2B_Synaptotagmin C2 domain second repeat present	99.75
cd04048	120	C2A_Copine C2 domain first repeat in Copine. There	99.74
cd04035	123	C2A_Rabphilin_Doc2 C2 domain first repeat present	99.74
cd08409	137	C2B_Synaptotagmin-15 C2 domain second repeat prese	99.73
KOG2059	800	consensus Ras GTPase-activating protein [Signal tr	99.72
cd04047	110	C2B_Copine C2 domain second repeat in Copine. Ther	99.7
PF00168	85	C2: C2 domain; InterPro: IPR000008 The C2 domain i	99.67
KOG1011	1283	consensus Neurotransmitter release regulator, UNC-	99.62
COG5038	1227	Ca2+-dependent lipid-binding protein, contains C2	99.59
PLN02270	808	phospholipase D alpha	99.58
smart00239	101	C2 Protein kinase C conserved region 2 (CalB). Ca2	99.57
cd00030	102	C2 C2 domain. The C2 domain was first identified i	99.56
cd08374	133	C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli	99.55
PLN02223	537	phosphoinositide phospholipase C	99.51
COG5038	1227	Ca2+-dependent lipid-binding protein, contains C2	99.47
KOG1028	421	consensus Ca2+-dependent phospholipid-binding prot	99.43
KOG0169	746	consensus Phosphoinositide-specific phospholipase	99.42
PLN02952	599	phosphoinositide phospholipase C	99.4
PLN02230	598	phosphoinositide phospholipase C 4	99.39
cd08689	109	C2_fungal_Pkc1p C2 domain found in protein kinase	99.37
KOG1264	1267	consensus Phospholipase C [Lipid transport and met	99.33
PLN02222	581	phosphoinositide phospholipase C 2	99.33
KOG1031	1169	consensus Predicted Ca2+-dependent phospholipid-bi	99.32
PLN02228	567	Phosphoinositide phospholipase C	99.31
PLN02352	758	phospholipase D epsilon	99.19
KOG1328	1103	consensus Synaptic vesicle protein BAIAP3, involve	99.18
KOG1328	1103	consensus Synaptic vesicle protein BAIAP3, involve	99.15
KOG2059	800	consensus Ras GTPase-activating protein [Signal tr	98.88
KOG1326	1105	consensus Membrane-associated protein FER-1 and re	98.79
KOG0905	1639	consensus Phosphoinositide 3-kinase [Signal transd	98.74
PLN02964	644	phosphatidylserine decarboxylase	98.5
KOG1013	362	consensus Synaptic vesicle protein rabphilin-3A [I	98.37
KOG1013	362	consensus Synaptic vesicle protein rabphilin-3A [I	98.2
cd08684	103	C2A_Tac2-N C2 domain first repeat found in Tac2-N	98.14
KOG1327	529	consensus Copine [Signal transduction mechanisms]	98.11
cd08683	143	C2_C2cd3 C2 domain found in C2 calcium-dependent d	98.08
KOG2060	405	consensus Rab3 effector RIM1 and related proteins,	97.92
KOG1011	1283	consensus Neurotransmitter release regulator, UNC-	97.92
KOG3837	523	consensus Uncharacterized conserved protein, conta	97.73
KOG1326	1105	consensus Membrane-associated protein FER-1 and re	97.66
cd08693	173	C2_PI3K_class_I_beta_delta C2 domain present in cl	97.52
cd08398	158	C2_PI3K_class_I_alpha C2 domain present in class I	97.42
PF15627	156	CEP76-C2: CEP76 C2 domain	97.3
cd08380	156	C2_PI3K_like C2 domain present in phosphatidylinos	97.26
KOG1265	1189	consensus Phospholipase C [Lipid transport and met	97.16
cd08687	98	C2_PKN-like C2 domain in Protein kinase C-like (PK	97.14
KOG1452	442	consensus Predicted Rho GTPase-activating protein	97.1
cd08399	178	C2_PI3K_class_I_gamma C2 domain present in class I	96.99
cd08397	159	C2_PI3K_class_III C2 domain present in class III p	96.95
cd04012	171	C2A_PI3K_class_II C2 domain first repeat present i	96.92
PF12416	340	DUF3668: Cep120 protein; InterPro: IPR022136 This	96.79
PF00792	142	PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I	96.41
PF10358	143	NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins;	96.37
PF15625	168	CC2D2AN-C2: CC2D2A N-terminal C2 domain	96.0
KOG1327	529	consensus Copine [Signal transduction mechanisms]	95.42
smart00142	100	PI3K_C2 Phosphoinositide 3-kinase, region postulat	94.92
PF11618	107	DUF3250: Protein of unknown function (DUF3250); In	94.66
cd08695	189	C2_Dock-B C2 domains found in Dedicator Of CytoKin	94.64
cd08694	196	C2_Dock-A C2 domains found in Dedicator Of CytoKin	94.57
PF14429	184	DOCK-C2: C2 domain in Dock180 and Zizimin proteins	94.07
KOG1329	887	consensus Phospholipase D1 [Lipid transport and me	91.2
PF07162	168	B9-C2: Ciliary basal body-associated, B9 protein;	90.4
cd08679	178	C2_DOCK180_related C2 domains found in Dedicator O	90.26
KOG0694	694	consensus Serine/threonine protein kinase [Signal	89.92
cd08696	179	C2_Dock-C C2 domains found in Dedicator Of CytoKin	89.74
cd08697	185	C2_Dock-D C2 domains found in Dedicator Of CytoKin	88.73
PTZ00447	508	apical membrane antigen 1-like protein; Provisiona	88.16
PF06219	460	DUF1005: Protein of unknown function (DUF1005); In	82.2
KOG0904	1076	consensus Phosphatidylinositol 3-kinase catalytic	81.71

>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]

Probab=100.00  E-value=1.2e-35  Score=203.50  Aligned_cols=164  Identities=62%  Similarity=0.971  Sum_probs=156.0

Q ss_pred             CCcccEEEEEEEEEeEcCCCCCC-CCCCcEEEEEECCE-EeeeeeeCCCCCeEecEEEEEEeCCCCcEEEEEEeCCCCCC
Q 031204            1 MENLMGLLRVHVLRGVNLAVRDV-VSSDPYVVIKMGKQ-LKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSL   78 (164)
Q Consensus         1 ~~~~~g~L~v~v~~a~~L~~~~~-~~~dpyv~v~~~~~-~~T~~~~~t~~P~w~e~~~f~~~~~~~~l~i~v~d~~~~~~   78 (164)
                      |..+.|.|+|+|++|.||..+|+ +++||||++.++++ .+|+++.++.||.|||+|+|.+.++...|+++|||+|.++.
T Consensus         1 m~~~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~~~~lkv~VyD~D~fs~   80 (168)
T KOG1030|consen    1 MEMLVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDPNTPLKVTVYDKDTFSS   80 (168)
T ss_pred             CCccceEEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCCCceEEEEEEeCCCCCc
Confidence            78899999999999999999995 99999999999999 99999999999999999999999999999999999999999


Q ss_pred             CceeEEEEEechhhhhhhccc-cc-CCCCceEEEEeccCCCccccccceeEeeCCeEEEEEeEEecccceeeEEEEEEEE
Q 031204           79 DDKMGDAEFYITPFLEALKMR-LE-GLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRNVEVGEVKIQLEWI  156 (164)
Q Consensus        79 ~~~lG~~~v~l~~l~~~~~~~-~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~G~l~l~l~~~  156 (164)
                      ||++|.++|++..+....... +. .++.|+.+..+.|...++..+++.+.+..|++.++.++++++.++|+++++++|+
T Consensus        81 dD~mG~A~I~l~p~~~~~~~~~l~~~~~~gt~~~~v~~s~dn~~~~es~i~~s~~~~~q~~~l~l~~ve~g~~e~~~~~~  160 (168)
T KOG1030|consen   81 DDFMGEATIPLKPLLEAQKMDYLKLELLTGTAIGKVLLSRDNCLNEESAIIRSFGKIVQDYILRLQNVECGELEIQLEWI  160 (168)
T ss_pred             ccccceeeeccHHHHHHhhhhccccccCCCcEeeEEEeccccccccceEEEecCChhhhhhccchhhcCcceeeeeeeEe
Confidence            999999999999999876665 33 8888999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCC
Q 031204          157 DIPGSRGL  164 (164)
Q Consensus       157 ~~~~~~~~  164 (164)
                      +.+++.|+
T Consensus       161 ~~~~~~~~  168 (168)
T KOG1030|consen  161 KLPGSVGL  168 (168)
T ss_pred             cCcccccC
Confidence            99998874

>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP)

Probab=100.00  E-value=7.8e-32  Score=185.50  Aligned_cols=143  Identities=61%  Similarity=1.024  Sum_probs=135.0

Q ss_pred             cEEEEEEEEEeEcCCCCCCCCCCcEEEEEECCE-EeeeeeeCCCCCeEecEEEEEEeCCCCcEEEEEEeCCCCCCCceeE
Q 031204            5 MGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQ-LKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSLDDKMG   83 (164)
Q Consensus         5 ~g~L~v~v~~a~~L~~~~~~~~dpyv~v~~~~~-~~T~~~~~t~~P~w~e~~~f~~~~~~~~l~i~v~d~~~~~~~~~lG   83 (164)
                      .|.|+|+|++|++|+..+.+.+||||++.++++ ++|++++++.||.|||+|.|.+.++...|.|+|||++.+++|++||
T Consensus         1 ~G~L~V~Vi~a~nL~~~d~~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~~~~l~~~V~D~d~~~~dd~iG   80 (145)
T cd04038           1 LGLLKVRVVRGTNLAVRDFTSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNPMAPLKLEVFDKDTFSKDDSMG   80 (145)
T ss_pred             CeEEEEEEEeeECCCCCCCCCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCCCCEEEEEEEECCCCCCCCEEE
Confidence            489999999999999877778999999999999 9999999999999999999999888778999999999999999999


Q ss_pred             EEEEechhhhhhhccc-ccCCCCceEEEEeccCCCccccccceeEeeCCeEEEEEeEEeccccee
Q 031204           84 DAEFYITPFLEALKMR-LEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRNVEVG  147 (164)
Q Consensus        84 ~~~v~l~~l~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~G  147 (164)
                      ++.+++.++....... +..++.|..+..|.|...+++.+++.+++.+|++.++++++|+++++|
T Consensus        81 ~a~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~l~~~~~g  145 (145)
T cd04038          81 EAEIDLEPLVEAAKLDHLRDTPGGTQIKKVLPSVENCLASESHITWKDGKIVQDLVLKLRNVESG  145 (145)
T ss_pred             EEEEEHHHhhhhhhhhccccCCCCEEEEEEecCCCceEeccceEEEECCEEEEEEEEEecccccC
Confidence            9999999999887776 778899999999999999999999999999999999999999999987

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i

>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip)

Probab=99.95  E-value=4e-27  Score=157.35  Aligned_cols=114  Identities=18%  Similarity=0.418  Sum_probs=98.2

Q ss_pred             cEEEEEEEEEeEcCCCCCCCCCCcEEEEEECCE-EeeeeeeC-CCCCeEecEEEEEEeCCCCcEEEEEEeCCCCCCCcee
Q 031204            5 MGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQ-LKTRVVKN-NVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSLDDKM   82 (164)
Q Consensus         5 ~g~L~v~v~~a~~L~~~~~~~~dpyv~v~~~~~-~~T~~~~~-t~~P~w~e~~~f~~~~~~~~l~i~v~d~~~~~~~~~l   82 (164)
                      .|+|.|+|++|++++..+.|++||||++.++++ ++|++..+ +.||.|||+|.|.+.+....|.|+|||++.+++|++|
T Consensus         1 ~g~L~v~v~~Ak~l~~~~~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~~~~l~~~V~d~d~~~~dd~i   80 (121)
T cd04016           1 VGRLSITVVQAKLVKNYGLTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEGVDSIYIEIFDERAFTMDERI   80 (121)
T ss_pred             CcEEEEEEEEccCCCcCCCCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCCCcEEEEEEEeCCCCcCCceE
Confidence            489999999999987666789999999999999 99999876 7999999999999976666799999999999999999


Q ss_pred             EEEEEechh-hhhhhcccccCCCCceEEEEeccCCCccccccceeEeeCCeEEEEEeEEecc----cceeeEEEEEEE
Q 031204           83 GDAEFYITP-FLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRN----VEVGEVKIQLEW  155 (164)
Q Consensus        83 G~~~v~l~~-l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~----~~~G~l~l~l~~  155 (164)
                      |.+.+++.. +..+..                                     .+.|++|.+    ...|+|||.|.|
T Consensus        81 G~~~i~l~~~~~~g~~-------------------------------------~~~W~~L~~~~~~~~~g~i~l~l~y  121 (121)
T cd04016          81 AWTHITIPESVFNGET-------------------------------------LDDWYSLSGKQGEDKEGMINLVFSY  121 (121)
T ss_pred             EEEEEECchhccCCCC-------------------------------------ccccEeCcCccCCCCceEEEEEEeC
Confidence            999999964 444321                                     278888866    457999999986

Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian

>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.93  E-value=7.9e-25  Score=146.75  Aligned_cols=114  Identities=32%  Similarity=0.522  Sum_probs=100.5

Q ss_pred             EEEEEEEEeEcCCCCC-CCCCCcEEEEEECCE--EeeeeeeCCCCCeEecEEEEEEeCCCCcEEEEEEeCCCCCCCceeE
Q 031204            7 LLRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQ--LKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSLDDKMG   83 (164)
Q Consensus         7 ~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~~--~~T~~~~~t~~P~w~e~~~f~~~~~~~~l~i~v~d~~~~~~~~~lG   83 (164)
                      +|+|+|++|++|+..+ .+.+||||++.+++.  ++|+++.++.||.|||+|.|.+......|.|+|||++..+++++||
T Consensus         1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~D~d~~~~~~~iG   80 (121)
T cd04042           1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQPLYIKVFDYDRGLTDDFMG   80 (121)
T ss_pred             CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCCCCeEEEEEEeCCCCCCCcceE
Confidence            4899999999999988 789999999999874  9999999999999999999999776778999999999998999999


Q ss_pred             EEEEechhhhhhhcccccCCCCceEEEEeccCCCccccccceeEeeCCeEEEEEeEEeccc----ceeeEEEEEEEEe
Q 031204           84 DAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRNV----EVGEVKIQLEWID  157 (164)
Q Consensus        84 ~~~v~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~----~~G~l~l~l~~~~  157 (164)
                      ++.+++.++..+...                                     +.|++|.+.    ..|+|+|.+++.|
T Consensus        81 ~~~~~l~~l~~~~~~-------------------------------------~~~~~L~~~~~~~~~G~l~l~~~~~~  121 (121)
T cd04042          81 SAFVDLSTLELNKPT-------------------------------------EVKLKLEDPNSDEDLGYISLVVTLTP  121 (121)
T ss_pred             EEEEEHHHcCCCCCe-------------------------------------EEEEECCCCCCccCceEEEEEEEECC
Confidence            999999998865433                                     778888643    4699999999865

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein

>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I

Probab=99.93  E-value=5e-25  Score=148.70  Aligned_cols=87  Identities=25%  Similarity=0.522  Sum_probs=79.6

Q ss_pred             EEEEEEEeEcCCCCC-CCCCCcEEEEEECCE-EeeeeeeCCCCCeEecEEEEEEeC------CCCcEEEEEEeCCCCCCC
Q 031204            8 LRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQ-LKTRVVKNNVNPEWNEDLTLSISD------SNLPIKLTVYDKDTFSLD   79 (164)
Q Consensus         8 L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~~-~~T~~~~~t~~P~w~e~~~f~~~~------~~~~l~i~v~d~~~~~~~   79 (164)
                      ++|+|++|+||+..+ .|.+||||++.+++. ++|+++.++.||.|||+|.|.+..      ....|.|+|||++.+++|
T Consensus         1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~d   80 (126)
T cd08682           1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGLD   80 (126)
T ss_pred             CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCCC
Confidence            579999999999888 789999999999988 999999999999999999999975      345699999999999889


Q ss_pred             ceeEEEEEechhhhh
Q 031204           80 DKMGDAEFYITPFLE   94 (164)
Q Consensus        80 ~~lG~~~v~l~~l~~   94 (164)
                      ++||++.+++.++..
T Consensus        81 ~~iG~~~i~l~~l~~   95 (126)
T cd08682          81 KFLGQVSIPLNDLDE   95 (126)
T ss_pred             ceeEEEEEEHHHhhc
Confidence            999999999998863

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member

>cd08375 C2_Intersectin C2 domain present in Intersectin

Probab=99.93  E-value=2.6e-24  Score=146.91  Aligned_cols=121  Identities=34%  Similarity=0.541  Sum_probs=104.2

Q ss_pred             cccEEEEEEEEEeEcCCCCC-CCCCCcEEEEEECCE-EeeeeeeCCCCCeEecEEEEEEeCCC-CcEEEEEEeCCCCCCC
Q 031204            3 NLMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQ-LKTRVVKNNVNPEWNEDLTLSISDSN-LPIKLTVYDKDTFSLD   79 (164)
Q Consensus         3 ~~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~~-~~T~~~~~t~~P~w~e~~~f~~~~~~-~~l~i~v~d~~~~~~~   79 (164)
                      ...|.|+|+|++|++|++.+ .+.+||||++.++++ ++|++++++.||.|||+|.|.+.++. ..|.|+|||++.+++|
T Consensus        12 ~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~~~d   91 (136)
T cd08375          12 SGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFFSPD   91 (136)
T ss_pred             CCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCCCCCC
Confidence            46799999999999999988 889999999999988 99999999999999999999997654 5699999999999899


Q ss_pred             ceeEEEEEechhhhhhhcccccCCCCceEEEEeccCCCccccccceeEeeCCeEEEEEeEEecccceeeEEEEEEE
Q 031204           80 DKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRNVEVGEVKIQLEW  155 (164)
Q Consensus        80 ~~lG~~~v~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~G~l~l~l~~  155 (164)
                      ++||++.+++.++......                              .++  ....|+.++++..|+|+|++.+
T Consensus        92 ~~lG~~~i~l~~l~~~~~~------------------------------~~~--~~~~~~~~~~~~~g~i~l~~~~  135 (136)
T cd08375          92 DFLGRTEIRVADILKETKE------------------------------SKG--PITKRLLLHEVPTGEVVVKLDL  135 (136)
T ss_pred             CeeEEEEEEHHHhcccccc------------------------------CCC--cEEEEeccccccceeEEEEEEe
Confidence            9999999999998763221                              011  1256788888999999999876

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro

>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.93  E-value=2.5e-24  Score=143.23  Aligned_cols=112  Identities=28%  Similarity=0.489  Sum_probs=99.7

Q ss_pred             EEEEEEEEeEcCCCCC-CCCCCcEEEEEECCE-EeeeeeeCCCCCeEecEEEEEEeCC-CCcEEEEEEeCCCCCCCceeE
Q 031204            7 LLRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQ-LKTRVVKNNVNPEWNEDLTLSISDS-NLPIKLTVYDKDTFSLDDKMG   83 (164)
Q Consensus         7 ~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~~-~~T~~~~~t~~P~w~e~~~f~~~~~-~~~l~i~v~d~~~~~~~~~lG   83 (164)
                      +|+|+|++|++|+..+ .+.+||||+++++++ ++|+++.++.||.|||+|.|.+..+ .+.|.|+|||++..+++++||
T Consensus         1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~~iG   80 (116)
T cd08376           1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDEFIG   80 (116)
T ss_pred             CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCCeEE
Confidence            4789999999999988 789999999999988 9999999999999999999999765 567999999999988999999


Q ss_pred             EEEEechhhhhhhcccccCCCCceEEEEeccCCCccccccceeEeeCCeEEEEEeEEecccceeeEEEEEEEE
Q 031204           84 DAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRNVEVGEVKIQLEWI  156 (164)
Q Consensus        84 ~~~v~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~G~l~l~l~~~  156 (164)
                      ++.++++++..+..                                     .+.|++|... .|+|++.++|.
T Consensus        81 ~~~~~l~~l~~~~~-------------------------------------~~~w~~L~~~-~G~~~~~~~~~  115 (116)
T cd08376          81 RCEIDLSALPREQT-------------------------------------HSLELELEDG-EGSLLLLLTLT  115 (116)
T ss_pred             EEEEeHHHCCCCCc-------------------------------------eEEEEEccCC-CcEEEEEEEec
Confidence            99999998776432                                     3899999864 69999999874

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei

>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins

Probab=99.93  E-value=1.5e-24  Score=145.20  Aligned_cols=112  Identities=31%  Similarity=0.649  Sum_probs=100.0

Q ss_pred             EEEEEEEEEeEcCCCCCC-------CCCCcEEEEEECCE-EeeeeeeCCCCCeEecEEEEEEeC-CCCcEEEEEEeCCCC
Q 031204            6 GLLRVHVLRGVNLAVRDV-------VSSDPYVVIKMGKQ-LKTRVVKNNVNPEWNEDLTLSISD-SNLPIKLTVYDKDTF   76 (164)
Q Consensus         6 g~L~v~v~~a~~L~~~~~-------~~~dpyv~v~~~~~-~~T~~~~~t~~P~w~e~~~f~~~~-~~~~l~i~v~d~~~~   76 (164)
                      |.|.|+|++|++|+..+.       +.+||||+++++++ ++|+++.++.+|.|||+|.|.+.. ..+.|.|+|||++..
T Consensus         1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~~   80 (121)
T cd08391           1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDPD   80 (121)
T ss_pred             CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCCC
Confidence            689999999999998762       57999999999988 999999999999999999999975 356799999999988


Q ss_pred             CCCceeEEEEEechhhhhhhcccccCCCCceEEEEeccCCCccccccceeEeeCCeEEEEEeEEecccceeeEEEEEEE
Q 031204           77 SLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRNVEVGEVKIQLEW  155 (164)
Q Consensus        77 ~~~~~lG~~~v~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~G~l~l~l~~  155 (164)
                       ++++||.+.+++.++..+..                                     .+.|++|.+...|+|+++++|
T Consensus        81 -~~~~iG~~~i~l~~l~~~~~-------------------------------------~~~w~~L~~~~~G~~~~~~~~  121 (121)
T cd08391          81 -KDDFLGRLSIDLGSVEKKGF-------------------------------------IDEWLPLEDVKSGRLHLKLEW  121 (121)
T ss_pred             -CCCcEEEEEEEHHHhcccCc-------------------------------------cceEEECcCCCCceEEEEEeC
Confidence             89999999999999875432                                     289999998899999999997

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular

>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins

Probab=99.92  E-value=2.7e-24  Score=143.47  Aligned_cols=112  Identities=31%  Similarity=0.541  Sum_probs=95.7

Q ss_pred             EEEEEEEEEeEcCCCCC-CCCCCcEEEEEECCE-EeeeeeeC-CCCCeEecEEEEEEeCC-CCcEEEEEEeCCCCCCCce
Q 031204            6 GLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQ-LKTRVVKN-NVNPEWNEDLTLSISDS-NLPIKLTVYDKDTFSLDDK   81 (164)
Q Consensus         6 g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~~-~~T~~~~~-t~~P~w~e~~~f~~~~~-~~~l~i~v~d~~~~~~~~~   81 (164)
                      |.|+|+|++|++|+..+ .+.+||||++.+++. ++|+++.+ +.||.|||+|.|.+..+ .+.|.|+|||++..+ +++
T Consensus         1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~-~~~   79 (118)
T cd08681           1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRK-PDL   79 (118)
T ss_pred             CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCC-Ccc
Confidence            78999999999999988 889999999999988 99998765 78999999999999764 456999999999875 899


Q ss_pred             eEEEEEechhhhhhhcccccCCCCceEEEEeccCCCccccccceeEeeCCeEEEEEeEEecc--cceeeEEEEEEE
Q 031204           82 MGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRN--VEVGEVKIQLEW  155 (164)
Q Consensus        82 lG~~~v~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~--~~~G~l~l~l~~  155 (164)
                      ||++.+++.++..+...                                     +.|+.|..  ...|+|+|+|+|
T Consensus        80 iG~~~~~l~~~~~~~~~-------------------------------------~~w~~L~~~~~~~G~i~l~l~f  118 (118)
T cd08681          80 IGDTEVDLSPALKEGEF-------------------------------------DDWYELTLKGRYAGEVYLELTF  118 (118)
T ss_pred             eEEEEEecHHHhhcCCC-------------------------------------CCcEEeccCCcEeeEEEEEEEC
Confidence            99999999998764322                                     56666654  467999999986

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr

>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3

Probab=99.92  E-value=8.5e-24  Score=141.72  Aligned_cols=88  Identities=19%  Similarity=0.385  Sum_probs=79.8

Q ss_pred             EEEEEEEeEcCCCCC--CCCCCcEEEEEECCE--EeeeeeeCCCCCeEecEEEEEEeCCCCcEEEEEEeCCCCCCCceeE
Q 031204            8 LRVHVLRGVNLAVRD--VVSSDPYVVIKMGKQ--LKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSLDDKMG   83 (164)
Q Consensus         8 L~v~v~~a~~L~~~~--~~~~dpyv~v~~~~~--~~T~~~~~t~~P~w~e~~~f~~~~~~~~l~i~v~d~~~~~~~~~lG   83 (164)
                      |.|+|++|+||+..+  .+.+||||.+.++++  ++|++++++.||.|||+|.|.+.+....|.|.|||++.++++++||
T Consensus         2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~~~~l~~~v~d~~~~~~~~~iG   81 (121)
T cd08401           2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRTFRHLSFYIYDRDVLRRDSVIG   81 (121)
T ss_pred             eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCCCCEEEEEEEECCCCCCCceEE
Confidence            689999999999874  578999999999876  8999999999999999999999865677999999999999999999


Q ss_pred             EEEEechhhhhh
Q 031204           84 DAEFYITPFLEA   95 (164)
Q Consensus        84 ~~~v~l~~l~~~   95 (164)
                      .+.++++++...
T Consensus        82 ~~~i~l~~l~~~   93 (121)
T cd08401          82 KVAIKKEDLHKY   93 (121)
T ss_pred             EEEEEHHHccCC
Confidence            999999988753

RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p

>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.92  E-value=5.3e-24  Score=143.16  Aligned_cols=90  Identities=28%  Similarity=0.489  Sum_probs=81.9

Q ss_pred             EEEEEEEEeEc---CCCCC-CCCCCcEEEEEECCE-EeeeeeeCCCCCeEecEEEEEEeCCCCcEEEEEEeCCCCC----
Q 031204            7 LLRVHVLRGVN---LAVRD-VVSSDPYVVIKMGKQ-LKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFS----   77 (164)
Q Consensus         7 ~L~v~v~~a~~---L~~~~-~~~~dpyv~v~~~~~-~~T~~~~~t~~P~w~e~~~f~~~~~~~~l~i~v~d~~~~~----   77 (164)
                      .|+|+|++|+|   |+.++ .|.+||||+++++++ .+|+++.++.||.|||+|.|.+.++...|.|+|||++..+    
T Consensus         1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~~~~l~v~V~d~d~~~~~~~   80 (126)
T cd08379           1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDPCTVLTVGVFDNSQSHWKEA   80 (126)
T ss_pred             CeEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCCCCEEEEEEEECCCcccccc
Confidence            38999999999   78777 889999999999999 9999999999999999999999877778999999998874    


Q ss_pred             --CCceeEEEEEechhhhhhh
Q 031204           78 --LDDKMGDAEFYITPFLEAL   96 (164)
Q Consensus        78 --~~~~lG~~~v~l~~l~~~~   96 (164)
                        +|++||++.+++..+..+.
T Consensus        81 ~~~dd~lG~~~i~l~~l~~~~  101 (126)
T cd08379          81 VQPDVLIGKVRIRLSTLEDDR  101 (126)
T ss_pred             CCCCceEEEEEEEHHHccCCC
Confidence              8999999999999887654

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein

Probab=99.91  E-value=2.2e-23  Score=140.71  Aligned_cols=114  Identities=22%  Similarity=0.353  Sum_probs=97.5

Q ss_pred             EEEEEEEeEcCCCCCCCCCCcEEEEEECC--E-EeeeeeeCCCCCeEecEEEEEEeCCCCcEEEEEEeCCCCCCCceeEE
Q 031204            8 LRVHVLRGVNLAVRDVVSSDPYVVIKMGK--Q-LKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSLDDKMGD   84 (164)
Q Consensus         8 L~v~v~~a~~L~~~~~~~~dpyv~v~~~~--~-~~T~~~~~t~~P~w~e~~~f~~~~~~~~l~i~v~d~~~~~~~~~lG~   84 (164)
                      |.|+|++|+||+. ..+.+||||++.++.  + ++|+++.++.||.|||.|.|.+......|.|+|||++..+++++||+
T Consensus         1 l~v~v~~A~~L~~-~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~~~~~lG~   79 (126)
T cd08678           1 LLVKNIKANGLSE-AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNSKELLFEVYDNGKKSDSKFLGL   79 (126)
T ss_pred             CEEEEEEecCCCC-CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCCCCEEEEEEEECCCCCCCceEEE
Confidence            6799999999988 678999999999974  4 99999999999999999999997556679999999999988999999


Q ss_pred             EEEechhhhhhhcccccCCCCceEEEEeccCCCccccccceeEeeCCeEEEEEeEEecc------cceeeEEEEEEEEec
Q 031204           85 AEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRN------VEVGEVKIQLEWIDI  158 (164)
Q Consensus        85 ~~v~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~------~~~G~l~l~l~~~~~  158 (164)
                      +.+++.++......                                     +.|++|..      ...|+|+++++|.+.
T Consensus        80 ~~i~l~~l~~~~~~-------------------------------------~~~~~L~~~~~~~~~~~G~l~l~~~~~~~  122 (126)
T cd08678          80 AIVPFDELRKNPSG-------------------------------------RQIFPLQGRPYEGDSVSGSITVEFLFMEP  122 (126)
T ss_pred             EEEeHHHhccCCce-------------------------------------eEEEEecCCCCCCCCcceEEEEEEEEecc
Confidence            99999998875432                                     45566542      358999999999875


Q ss_pred             C
Q 031204          159 P  159 (164)
Q Consensus       159 ~  159 (164)
                      .
T Consensus       123 ~  123 (126)
T cd08678         123 A  123 (126)
T ss_pred             c
Confidence            4

The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a

>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.91  E-value=1.5e-23  Score=141.71  Aligned_cols=89  Identities=36%  Similarity=0.653  Sum_probs=81.5

Q ss_pred             EEEEEEEEEeEcCCCCC---CCCCCcEEEEEECCE-EeeeeeeCCCCCeEecEEEEEEeC-CCCcEEEEEEeCCCCCCCc
Q 031204            6 GLLRVHVLRGVNLAVRD---VVSSDPYVVIKMGKQ-LKTRVVKNNVNPEWNEDLTLSISD-SNLPIKLTVYDKDTFSLDD   80 (164)
Q Consensus         6 g~L~v~v~~a~~L~~~~---~~~~dpyv~v~~~~~-~~T~~~~~t~~P~w~e~~~f~~~~-~~~~l~i~v~d~~~~~~~~   80 (164)
                      |.|.|+|++|++|+..+   .+.+||||++.++++ ++|++++++.||.|||+|.|.+.. ..+.|.|+|||++..+.++
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~~~~   80 (128)
T cd04024           1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFAGKD   80 (128)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCCCCC
Confidence            78999999999999876   468999999999888 999999999999999999999986 4567999999999988999


Q ss_pred             eeEEEEEechhhhh
Q 031204           81 KMGDAEFYITPFLE   94 (164)
Q Consensus        81 ~lG~~~v~l~~l~~   94 (164)
                      +||++.+++.++..
T Consensus        81 ~lG~~~i~l~~~~~   94 (128)
T cd04024          81 YLGEFDIALEEVFA   94 (128)
T ss_pred             cceEEEEEHHHhhc
Confidence            99999999999874

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu

>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.91  E-value=1.2e-23  Score=142.13  Aligned_cols=87  Identities=31%  Similarity=0.483  Sum_probs=79.2

Q ss_pred             EEEEEEEEeEcCCCCC-CCCCCcEEEEEECCE-EeeeeeeCCCCCeEecEEEEEEeCC----CCcEEEEEEeCCCCC-CC
Q 031204            7 LLRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQ-LKTRVVKNNVNPEWNEDLTLSISDS----NLPIKLTVYDKDTFS-LD   79 (164)
Q Consensus         7 ~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~~-~~T~~~~~t~~P~w~e~~~f~~~~~----~~~l~i~v~d~~~~~-~~   79 (164)
                      .|+|+|++|++|++.+ .+.+||||++.++++ ++|+++.++.||.|||.|.|.+..+    ...|.|+|||++.++ ++
T Consensus         1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d   80 (127)
T cd04022           1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRR   80 (127)
T ss_pred             CeEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCC
Confidence            4899999999999988 788999999999999 9999999999999999999999753    246999999999886 89


Q ss_pred             ceeEEEEEechhhh
Q 031204           80 DKMGDAEFYITPFL   93 (164)
Q Consensus        80 ~~lG~~~v~l~~l~   93 (164)
                      ++||++.++++++.
T Consensus        81 ~~lG~v~i~l~~l~   94 (127)
T cd04022          81 SFLGRVRISGTSFV   94 (127)
T ss_pred             CeeeEEEEcHHHcC
Confidence            99999999999887

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

Probab=99.91  E-value=1.5e-23  Score=140.20  Aligned_cols=110  Identities=28%  Similarity=0.480  Sum_probs=96.9

Q ss_pred             EEEEEEEeEcCCCCC-CCCCCcEEEEEECC---E-EeeeeeeCCCCCeEecEEEEEEeCC-CCcEEEEEEeCCCCCCCce
Q 031204            8 LRVHVLRGVNLAVRD-VVSSDPYVVIKMGK---Q-LKTRVVKNNVNPEWNEDLTLSISDS-NLPIKLTVYDKDTFSLDDK   81 (164)
Q Consensus         8 L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~---~-~~T~~~~~t~~P~w~e~~~f~~~~~-~~~l~i~v~d~~~~~~~~~   81 (164)
                      |+|+|++|++|+..+ .+.+||||++.+.+   . ++|+++.++.||.|||+|.|.+... ...|.|+|||++.. ++++
T Consensus         2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~-~~~~   80 (119)
T cd04036           2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYV-MDDH   80 (119)
T ss_pred             eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCC-CCcc
Confidence            789999999999888 78999999999863   3 9999999999999999999998754 34599999999998 9999


Q ss_pred             eEEEEEechhhhhhhcccccCCCCceEEEEeccCCCccccccceeEeeCCeEEEEEeEEecccceeeEEEEEEE
Q 031204           82 MGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRNVEVGEVKIQLEW  155 (164)
Q Consensus        82 lG~~~v~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~G~l~l~l~~  155 (164)
                      ||++.+++.++..+..                                     .+.|+.|....+|+|++++..
T Consensus        81 iG~~~~~l~~l~~g~~-------------------------------------~~~~~~L~~~~~g~l~~~~~~  117 (119)
T cd04036          81 LGTVLFDVSKLKLGEK-------------------------------------VRVTFSLNPQGKEELEVEFLL  117 (119)
T ss_pred             cEEEEEEHHHCCCCCc-------------------------------------EEEEEECCCCCCceEEEEEEe
Confidence            9999999998876543                                     389999998889999998864

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o

>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins

Probab=99.91  E-value=2.5e-23  Score=139.75  Aligned_cols=119  Identities=29%  Similarity=0.460  Sum_probs=99.2

Q ss_pred             cEEEEEEEEEeEcCCCCC--CCCCCcEEEEEECC--E-EeeeeeeCCCCCeEecEEEEEEeCCCCcEEEEEEeCCCCCCC
Q 031204            5 MGLLRVHVLRGVNLAVRD--VVSSDPYVVIKMGK--Q-LKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSLD   79 (164)
Q Consensus         5 ~g~L~v~v~~a~~L~~~~--~~~~dpyv~v~~~~--~-~~T~~~~~t~~P~w~e~~~f~~~~~~~~l~i~v~d~~~~~~~   79 (164)
                      +|.|+|+|++|++|+..+  .+.+||||++.+.+  . ++|+++.++.+|.|||.|.|.+....+.|.|+|||.+..+++
T Consensus         1 ~g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~~~~~l~~~v~d~~~~~~d   80 (124)
T cd04044           1 IGVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNSLTEPLNLTVYDFNDKRKD   80 (124)
T ss_pred             CeEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCCCCCEEEEEEEecCCCCCC
Confidence            589999999999999655  46789999999988  5 999999999999999999999985577899999999998899


Q ss_pred             ceeEEEEEechhhhhhhcccccCCCCceEEEEeccCCCccccccceeEeeCCeEEEEEeEEecccceeeEEEEEEEEe
Q 031204           80 DKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRNVEVGEVKIQLEWID  157 (164)
Q Consensus        80 ~~lG~~~v~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~G~l~l~l~~~~  157 (164)
                      ++||.+.+++.++.......       .                           ....+...+...|+|++.|+|+|
T Consensus        81 ~~iG~~~~~l~~l~~~~~~~-------~---------------------------~~~~~~~~~k~~G~i~~~l~~~p  124 (124)
T cd04044          81 KLIGTAEFDLSSLLQNPEQE-------N---------------------------LTKNLLRNGKPVGELNYDLRFFP  124 (124)
T ss_pred             ceeEEEEEEHHHhccCcccc-------C---------------------------cchhhhcCCccceEEEEEEEeCC
Confidence            99999999999988754320       0                           01112335567899999999986

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.91  E-value=4.5e-23  Score=137.68  Aligned_cols=89  Identities=31%  Similarity=0.542  Sum_probs=82.3

Q ss_pred             EEEEEEEEEeEcCCCCC-CCCCCcEEEEEECCE-EeeeeeeCCCCCeEecEEEEEEeCCCCcEEEEEEeCCCCCCCceeE
Q 031204            6 GLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQ-LKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSLDDKMG   83 (164)
Q Consensus         6 g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~~-~~T~~~~~t~~P~w~e~~~f~~~~~~~~l~i~v~d~~~~~~~~~lG   83 (164)
                      |.|.|+|++|++|+..+ .+.+||||++++.+. ++|+++.++.||.|+|+|.|.+......+.|+|||++..+++++||
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~~~~~l~~~v~d~~~~~~~~~iG   80 (119)
T cd08377           1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDIHDVLEVTVYDEDKDKKPEFLG   80 (119)
T ss_pred             CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecCcCCEEEEEEEECCCCCCCceee
Confidence            78999999999999888 788999999999988 9999999999999999999999766778999999999888999999


Q ss_pred             EEEEechhhhh
Q 031204           84 DAEFYITPFLE   94 (164)
Q Consensus        84 ~~~v~l~~l~~   94 (164)
                      ++.+++.++..
T Consensus        81 ~~~~~l~~~~~   91 (119)
T cd08377          81 KVAIPLLSIKN   91 (119)
T ss_pred             EEEEEHHHCCC
Confidence            99999988754

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran

>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4

Probab=99.90  E-value=9.2e-23  Score=136.74  Aligned_cols=87  Identities=30%  Similarity=0.543  Sum_probs=80.0

Q ss_pred             EEEEEEEeEcCCCCC-CCCCCcEEEEEECCE--EeeeeeeCCCCCeEecEEEEEEeCCCCcEEEEEEeCCCCCCCceeEE
Q 031204            8 LRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQ--LKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSLDDKMGD   84 (164)
Q Consensus         8 L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~~--~~T~~~~~t~~P~w~e~~~f~~~~~~~~l~i~v~d~~~~~~~~~lG~   84 (164)
                      |.|+|++|++|++.+ .|.+||||++.+++.  ++|+++.++.||.|||.|.|.+....+.|.|+|||++.++++++||+
T Consensus         2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~~~~l~v~v~d~~~~~~d~~iG~   81 (121)
T cd04054           2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGFHTVSFYVLDEDTLSRDDVIGK   81 (121)
T ss_pred             EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCCCCEEEEEEEECCCCCCCCEEEE
Confidence            789999999999999 889999999999876  89999999999999999999997666789999999999989999999


Q ss_pred             EEEechhhhh
Q 031204           85 AEFYITPFLE   94 (164)
Q Consensus        85 ~~v~l~~l~~   94 (164)
                      +.++++.+..
T Consensus        82 ~~~~~~~~~~   91 (121)
T cd04054          82 VSLTREVISA   91 (121)
T ss_pred             EEEcHHHhcc
Confidence            9999887754

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.

>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.90  E-value=8e-23  Score=141.64  Aligned_cols=89  Identities=28%  Similarity=0.421  Sum_probs=80.2

Q ss_pred             EEEEEEEEeEcCCCCC-CCCCCcEEEEEECCE-EeeeeeeC-CCCCeEecEEEEEEeCCC-CcEEEEEEeCCCCCCCcee
Q 031204            7 LLRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQ-LKTRVVKN-NVNPEWNEDLTLSISDSN-LPIKLTVYDKDTFSLDDKM   82 (164)
Q Consensus         7 ~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~~-~~T~~~~~-t~~P~w~e~~~f~~~~~~-~~l~i~v~d~~~~~~~~~l   82 (164)
                      .|.|+|++|++|++.+ .|.+||||++.++++ .+|++..+ +.||.|||+|.|.+.++. +.+.|+|||++..+++++|
T Consensus         1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd~l   80 (150)
T cd04019           1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDEPL   80 (150)
T ss_pred             CEEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCCeE
Confidence            3899999999999998 889999999999999 99999977 699999999999997653 5699999999988889999


Q ss_pred             EEEEEechhhhhh
Q 031204           83 GDAEFYITPFLEA   95 (164)
Q Consensus        83 G~~~v~l~~l~~~   95 (164)
                      |++.+++.++..+
T Consensus        81 G~v~i~L~~l~~~   93 (150)
T cd04019          81 GRAVIPLNDIERR   93 (150)
T ss_pred             EEEEEEHHHCccc
Confidence            9999999988653

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1)

Probab=99.90  E-value=2.4e-22  Score=135.58  Aligned_cols=113  Identities=19%  Similarity=0.387  Sum_probs=93.9

Q ss_pred             cEEEEEEEEEeEcCCCCCCCCCCcEEEEEECCE--EeeeeeeCCCCCeEecEEEEEEeCCC-CcEEEEEEeCCCCCCCce
Q 031204            5 MGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQ--LKTRVVKNNVNPEWNEDLTLSISDSN-LPIKLTVYDKDTFSLDDK   81 (164)
Q Consensus         5 ~g~L~v~v~~a~~L~~~~~~~~dpyv~v~~~~~--~~T~~~~~t~~P~w~e~~~f~~~~~~-~~l~i~v~d~~~~~~~~~   81 (164)
                      ...|+|+|++|++|+..  +.+||||++.+++.  .+|++. ++.||.|||+|.|.+..+. ..+.|.|||++..+++++
T Consensus         3 ~~~L~V~Vi~A~~L~~~--~~~DPYv~v~l~~~~~~kT~v~-~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~d~~   79 (126)
T cd08400           3 VRSLQLNVLEAHKLPVK--HVPHPYCVISLNEVKVARTKVR-EGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSKDSE   79 (126)
T ss_pred             eeEEEEEEEEeeCCCCC--CCCCeeEEEEECCEeEEEeecC-CCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCCCCe
Confidence            45799999999999875  47899999999875  788874 6899999999999876554 469999999999999999


Q ss_pred             eEEEEEechhhhhhhcccccCCCCceEEEEeccCCCccccccceeEeeCCeEEEEEeEEecc------cceeeEEEEEEE
Q 031204           82 MGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRN------VEVGEVKIQLEW  155 (164)
Q Consensus        82 lG~~~v~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~------~~~G~l~l~l~~  155 (164)
                      ||.+.++++++..+..                                     .+.|+.|..      ...|+|+|+++|
T Consensus        80 iG~v~i~l~~l~~~~~-------------------------------------~~~W~~L~~~~~~~~~~~G~i~l~l~~  122 (126)
T cd08400          80 IAEVTVQLSKLQNGQE-------------------------------------TDEWYPLSSASPLKGGEWGSLRIRARY  122 (126)
T ss_pred             EEEEEEEHhHccCCCc-------------------------------------ccEeEEcccCCCCCCCcCcEEEEEEEE
Confidence            9999999998766432                                     267777753      345999999999


Q ss_pred             Ee
Q 031204          156 ID  157 (164)
Q Consensus       156 ~~  157 (164)
                      .+
T Consensus       123 ~~  124 (126)
T cd08400         123 SH  124 (126)
T ss_pred             Ec
Confidence            75

RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki

>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD)

Probab=99.90  E-value=2e-22  Score=140.85  Aligned_cols=114  Identities=25%  Similarity=0.427  Sum_probs=96.7

Q ss_pred             cEEEEEEEEEeEcCCCCC-------------------------------CCCCCcEEEEEECCE--EeeeeeeCCCCCeE
Q 031204            5 MGLLRVHVLRGVNLAVRD-------------------------------VVSSDPYVVIKMGKQ--LKTRVVKNNVNPEW   51 (164)
Q Consensus         5 ~g~L~v~v~~a~~L~~~~-------------------------------~~~~dpyv~v~~~~~--~~T~~~~~t~~P~w   51 (164)
                      -|+|.|+|.+|++|++++                               .|.+||||++++++.  .+|+++.++.||.|
T Consensus         6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~W   85 (158)
T cd04015           6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVW   85 (158)
T ss_pred             eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCcc
Confidence            589999999999999865                               245899999999976  79999999999999


Q ss_pred             ecEEEEEEeCCCCcEEEEEEeCCCCCCCceeEEEEEechhhhhhhcccccCCCCceEEEEeccCCCccccccceeEeeCC
Q 031204           52 NEDLTLSISDSNLPIKLTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDG  131 (164)
Q Consensus        52 ~e~~~f~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g  131 (164)
                      ||+|.|.+....+.|.|+|||++.+ .+++||++.++++++..+..                                  
T Consensus        86 nE~F~~~~~~~~~~l~~~V~d~d~~-~~~~IG~~~i~l~~l~~g~~----------------------------------  130 (158)
T cd04015          86 NESFHIYCAHYASHVEFTVKDNDVV-GAQLIGRAYIPVEDLLSGEP----------------------------------  130 (158)
T ss_pred             ceEEEEEccCCCCEEEEEEEeCCCc-CCcEEEEEEEEhHHccCCCC----------------------------------
Confidence            9999999877777899999999988 56899999999999876432                                  


Q ss_pred             eEEEEEeEEeccc------ceeeEEEEEEEE
Q 031204          132 KLVQNLFLRLRNV------EVGEVKIQLEWI  156 (164)
Q Consensus       132 ~~~~~~~~~l~~~------~~G~l~l~l~~~  156 (164)
                         .+.|++|.+.      ..|+|+|+++|.
T Consensus       131 ---~~~w~~L~~~~~~~~~~~~~l~v~~~f~  158 (158)
T cd04015         131 ---VEGWLPILDSNGKPPKPGAKIRVSLQFT  158 (158)
T ss_pred             ---cceEEECcCCCCCCCCCCCEEEEEEEEC
Confidence               2778887542      357999999984

PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic

>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon

Probab=99.90  E-value=3e-22  Score=136.17  Aligned_cols=115  Identities=23%  Similarity=0.406  Sum_probs=99.5

Q ss_pred             cEEEEEEEEEeEcCCCCCC-----------CCCCcEEEEEECCE--EeeeeeeCCCCCeEecEEEEEEeCCCCcEEEEEE
Q 031204            5 MGLLRVHVLRGVNLAVRDV-----------VSSDPYVVIKMGKQ--LKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVY   71 (164)
Q Consensus         5 ~g~L~v~v~~a~~L~~~~~-----------~~~dpyv~v~~~~~--~~T~~~~~t~~P~w~e~~~f~~~~~~~~l~i~v~   71 (164)
                      .|.|+|+|++|++|+..+.           +.+||||++.++++  .+|+++.++.+|.|||+|.|.+. ..+.|.|.||
T Consensus         3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~-~~~~l~~~v~   81 (132)
T cd04014           3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVH-NGRNLELTVF   81 (132)
T ss_pred             ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcC-CCCEEEEEEE
Confidence            5899999999999988773           47899999999986  79999999999999999999996 4567999999


Q ss_pred             eCCCCCCCceeEEEEEechhhhhhhcccccCCCCceEEEEeccCCCccccccceeEeeCCeEEEEEeEEecccceeeEEE
Q 031204           72 DKDTFSLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRNVEVGEVKI  151 (164)
Q Consensus        72 d~~~~~~~~~lG~~~v~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~G~l~l  151 (164)
                      |++.++.+++||++.+++.++......                                   ..+.|+.|.  +.|+|+|
T Consensus        82 d~~~~~~~~~iG~~~i~l~~l~~~~~~-----------------------------------~~~~w~~L~--~~G~l~l  124 (132)
T cd04014          82 HDAAIGPDDFVANCTISFEDLIQRGSG-----------------------------------SFDLWVDLE--PQGKLHV  124 (132)
T ss_pred             eCCCCCCCceEEEEEEEhHHhcccCCC-----------------------------------cccEEEEcc--CCcEEEE
Confidence            999888899999999999988763110                                   138999998  7899999


Q ss_pred             EEEEEe
Q 031204          152 QLEWID  157 (164)
Q Consensus       152 ~l~~~~  157 (164)
                      +++|..
T Consensus       125 ~~~~~~  130 (132)
T cd04014         125 KIELKG  130 (132)
T ss_pred             EEEEec
Confidence            999864

A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>cd04046 C2_Calpain C2 domain present in Calpain proteins

Probab=99.89  E-value=5e-22  Score=134.07  Aligned_cols=88  Identities=26%  Similarity=0.456  Sum_probs=81.1

Q ss_pred             ccEEEEEEEEEeEcCCCCC-CCCCCcEEEEEECCE-EeeeeeeCCCCCeEecEEEEEEeCCCCcEEEEEEeCCCCCCCce
Q 031204            4 LMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQ-LKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSLDDK   81 (164)
Q Consensus         4 ~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~~-~~T~~~~~t~~P~w~e~~~f~~~~~~~~l~i~v~d~~~~~~~~~   81 (164)
                      +..+|+|+|++|++|+..+ ++.+||||++.++++ ++|++++++.+|.|||.|.|.+..+...|.|+|||++.. .|++
T Consensus         1 ~~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~i~V~d~~~~-~d~~   79 (126)
T cd04046           1 PQVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKPRSPIKIQVWNSNLL-CDEF   79 (126)
T ss_pred             CcEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCCCCEEEEEEEECCCC-CCCc
Confidence            4678999999999999888 789999999999999 999999999999999999999887777899999999987 6899


Q ss_pred             eEEEEEechhh
Q 031204           82 MGDAEFYITPF   92 (164)
Q Consensus        82 lG~~~v~l~~l   92 (164)
                      ||.+.+++.++
T Consensus        80 lG~~~~~l~~~   90 (126)
T cd04046          80 LGQATLSADPN   90 (126)
T ss_pred             eEEEEEecccC
Confidence            99999999764

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic

>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4

Probab=99.89  E-value=6.3e-22  Score=132.96  Aligned_cols=89  Identities=36%  Similarity=0.580  Sum_probs=81.2

Q ss_pred             EEEEEEEEeEcCCCCC-CCCCCcEEEEEECCE-EeeeeeeCCCCCeEecEEEEEEeCC-CCcEEEEEEeCCCCCCCceeE
Q 031204            7 LLRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQ-LKTRVVKNNVNPEWNEDLTLSISDS-NLPIKLTVYDKDTFSLDDKMG   83 (164)
Q Consensus         7 ~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~~-~~T~~~~~t~~P~w~e~~~f~~~~~-~~~l~i~v~d~~~~~~~~~lG   83 (164)
                      +|+|+|++|++|+..+ .+.+||||++++++. ++|+++.++.||.|||+|.|.+... ...|.|+|||++..+++++||
T Consensus         1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~~iG   80 (123)
T cd04025           1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKNDFLG   80 (123)
T ss_pred             CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCcEeE
Confidence            5899999999999988 778999999999988 9999999999999999999999765 456999999999998999999


Q ss_pred             EEEEechhhhhh
Q 031204           84 DAEFYITPFLEA   95 (164)
Q Consensus        84 ~~~v~l~~l~~~   95 (164)
                      ++.++++++...
T Consensus        81 ~~~~~l~~l~~~   92 (123)
T cd04025          81 KVVFSIQTLQQA   92 (123)
T ss_pred             EEEEEHHHcccC
Confidence            999999988654

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a

>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD)

Probab=99.89  E-value=5.1e-22  Score=130.47  Aligned_cols=92  Identities=25%  Similarity=0.509  Sum_probs=82.2

Q ss_pred             EEEEEEEEEeEcCCCCC-C----CCCCcEEEEEECCE-EeeeeeeCCCCCeEecEEEEEEeCCC--CcEEEEEEeCCCCC
Q 031204            6 GLLRVHVLRGVNLAVRD-V----VSSDPYVVIKMGKQ-LKTRVVKNNVNPEWNEDLTLSISDSN--LPIKLTVYDKDTFS   77 (164)
Q Consensus         6 g~L~v~v~~a~~L~~~~-~----~~~dpyv~v~~~~~-~~T~~~~~t~~P~w~e~~~f~~~~~~--~~l~i~v~d~~~~~   77 (164)
                      |+|.|+|++|++|++.+ .    +.+||||++.+++. ++|++++++.||+|||.|.|.+.+..  ..|.|+|||++..+
T Consensus         1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~   80 (108)
T cd04039           1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFS   80 (108)
T ss_pred             CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCCC
Confidence            78999999999999876 2    35899999999888 99999999999999999999986533  46999999999999


Q ss_pred             CCceeEEEEEechhhhhhhc
Q 031204           78 LDDKMGDAEFYITPFLEALK   97 (164)
Q Consensus        78 ~~~~lG~~~v~l~~l~~~~~   97 (164)
                      +|++||++.++|+++..+..
T Consensus        81 ~dd~IG~~~l~L~~l~~~~~  100 (108)
T cd04039          81 FNDYVATGSLSVQELLNAAP  100 (108)
T ss_pred             CCcceEEEEEEHHHHHhhCC
Confidence            99999999999999988654

PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM

>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

Probab=99.89  E-value=7.1e-22  Score=134.37  Aligned_cols=119  Identities=26%  Similarity=0.484  Sum_probs=97.0

Q ss_pred             EEEEEEEEeEcCCCCC-CCCCCcEEEEEECCE--------EeeeeeeCCCCCeEecEEEEEEeCCCCcEEEEEEeCCCCC
Q 031204            7 LLRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQ--------LKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFS   77 (164)
Q Consensus         7 ~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~~--------~~T~~~~~t~~P~w~e~~~f~~~~~~~~l~i~v~d~~~~~   77 (164)
                      .|+|+|++|++|+..+ .+.+||||++.+.+.        ++|+++.++.||.|||+|.|.+......|.|+|||++.++
T Consensus         1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~   80 (133)
T cd04033           1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPREHRLLFEVFDENRLT   80 (133)
T ss_pred             CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCCCCEEEEEEEECCCCC
Confidence            4899999999999988 789999999998631        7899999999999999999999765667999999999998


Q ss_pred             CCceeEEEEEechhhhhhhcccccCCCCceEEEEeccCCCccccccceeEeeCCeEEEEEeEEecc-----cceeeEEEE
Q 031204           78 LDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRN-----VEVGEVKIQ  152 (164)
Q Consensus        78 ~~~~lG~~~v~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~-----~~~G~l~l~  152 (164)
                      ++++||++.+++.++........                               ....+.|++|+.     ...|+|+|+
T Consensus        81 ~~~~iG~~~i~l~~l~~~~~~~~-------------------------------~~~~~~~~~l~~~~~~~~~~G~l~~~  129 (133)
T cd04033          81 RDDFLGQVEVPLNNLPTETPGNE-------------------------------RRYTFKDYLLRPRSSKSRVKGHLRLY  129 (133)
T ss_pred             CCCeeEEEEEEHHHCCCcCcccc-------------------------------ccccchheeeeecCCCCcceeEEEEE
Confidence            99999999999999876432100                               011256666653     358999999


Q ss_pred             EEEE
Q 031204          153 LEWI  156 (164)
Q Consensus       153 l~~~  156 (164)
                      +.|+
T Consensus       130 ~~~~  133 (133)
T cd04033         130 MAYL  133 (133)
T ss_pred             EeeC
Confidence            9884

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin

Probab=99.89  E-value=1.4e-21  Score=131.97  Aligned_cols=115  Identities=19%  Similarity=0.263  Sum_probs=98.5

Q ss_pred             EEEeEcCCCCCCCCCCcEEEEEECCE-EeeeeeeCCCCCeEecEEEEEEeCC---CCcEEEEEEeCCCCCCCceeEEEEE
Q 031204           12 VLRGVNLAVRDVVSSDPYVVIKMGKQ-LKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTVYDKDTFSLDDKMGDAEF   87 (164)
Q Consensus        12 v~~a~~L~~~~~~~~dpyv~v~~~~~-~~T~~~~~t~~P~w~e~~~f~~~~~---~~~l~i~v~d~~~~~~~~~lG~~~v   87 (164)
                      |++|++|+. ..+.+||||++.+.+. ++|++++++.||.|||+|.|.+..+   .+.|.|+|||++..+++++||++.+
T Consensus         2 vi~a~~L~~-~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~~   80 (127)
T cd08373           2 VVSLKNLPG-LKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSATV   80 (127)
T ss_pred             eEEeeCCcc-cCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEEEE
Confidence            689999998 5678999999999988 9999999999999999999999653   4679999999999889999999999


Q ss_pred             echhhhhhhcccccCCCCceEEEEeccCCCccccccceeEeeCCeEEEEEeEEeccc----ceeeEEEEEEEEecCCCCC
Q 031204           88 YITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRNV----EVGEVKIQLEWIDIPGSRG  163 (164)
Q Consensus        88 ~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~----~~G~l~l~l~~~~~~~~~~  163 (164)
                      +++++..+..                                     .+.|++|.+.    ..|+|++.++|.|++...|
T Consensus        81 ~l~~l~~~~~-------------------------------------~~~~~~L~~~~~~~~~~~l~l~~~~~~~~~~~~  123 (127)
T cd08373          81 SLQDLVSEGL-------------------------------------LEVTEPLLDSNGRPTGATISLEVSYQPPDGAVG  123 (127)
T ss_pred             EhhHcccCCc-------------------------------------eEEEEeCcCCCCCcccEEEEEEEEEeCCCCccC
Confidence            9998876432                                     2667777432    3589999999999998776


Q ss_pred             C
Q 031204          164 L  164 (164)
Q Consensus       164 ~  164 (164)
                      +
T Consensus       124 ~  124 (127)
T cd08373         124 G  124 (127)
T ss_pred             C
Confidence            3

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.88  E-value=5.2e-22  Score=133.05  Aligned_cols=83  Identities=30%  Similarity=0.514  Sum_probs=76.0

Q ss_pred             EEEEEEEeEcCCCCCCCCCCcEEEEEECCE-EeeeeeeCCCCCeEecEEEEEEeCC-CCcEEEEEEeCCCCCCCceeEEE
Q 031204            8 LRVHVLRGVNLAVRDVVSSDPYVVIKMGKQ-LKTRVVKNNVNPEWNEDLTLSISDS-NLPIKLTVYDKDTFSLDDKMGDA   85 (164)
Q Consensus         8 L~v~v~~a~~L~~~~~~~~dpyv~v~~~~~-~~T~~~~~t~~P~w~e~~~f~~~~~-~~~l~i~v~d~~~~~~~~~lG~~   85 (164)
                      |+|+|++|++|+..   .+||||++.+++. .+|++++++.||.|||+|.|.+..+ ...|.|+|||++.. ++++||++
T Consensus         2 L~V~Vi~a~~L~~~---~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~-~~~~lG~~   77 (121)
T cd08378           2 LYVRVVKARGLPAN---SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKA-KDDFLGGV   77 (121)
T ss_pred             EEEEEEEecCCCcc---cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCC-cCceeeeE
Confidence            88999999999876   7899999999988 9999999999999999999998764 45699999999987 88999999


Q ss_pred             EEechhhhh
Q 031204           86 EFYITPFLE   94 (164)
Q Consensus        86 ~v~l~~l~~   94 (164)
                      .++++++..
T Consensus        78 ~i~l~~l~~   86 (121)
T cd08378          78 CFDLSEVPT   86 (121)
T ss_pred             EEEhHhCcC
Confidence            999998865

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.88  E-value=1.1e-21  Score=130.89  Aligned_cols=90  Identities=18%  Similarity=0.243  Sum_probs=78.0

Q ss_pred             EEEEEEEEeEcCCCCCCCCCCcEEEEEECC-------E-EeeeeeeCCCCCeEecEEEEEEeCC----CCcEEEEEEeCC
Q 031204            7 LLRVHVLRGVNLAVRDVVSSDPYVVIKMGK-------Q-LKTRVVKNNVNPEWNEDLTLSISDS----NLPIKLTVYDKD   74 (164)
Q Consensus         7 ~L~v~v~~a~~L~~~~~~~~dpyv~v~~~~-------~-~~T~~~~~t~~P~w~e~~~f~~~~~----~~~l~i~v~d~~   74 (164)
                      .|+|+|++|++|+..+.|.+||||++++.+       + ++|+++.++.||+|||+|.|.+...    ...|.|.|||++
T Consensus         1 kL~V~Vi~A~~L~~~d~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d   80 (120)
T cd08395           1 KVTVKVVAANDLKWQTTGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDYC   80 (120)
T ss_pred             CEEEEEEECcCCCcccCCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEec
Confidence            489999999999987788999999999832       2 6899999999999999999999743    245999999999


Q ss_pred             CCCCCceeEEEEEechhhhhhh
Q 031204           75 TFSLDDKMGDAEFYITPFLEAL   96 (164)
Q Consensus        75 ~~~~~~~lG~~~v~l~~l~~~~   96 (164)
                      ..+++++||++.+++.++..+.
T Consensus        81 ~~~~dd~IG~~~l~l~~~~~~~  102 (120)
T cd08395          81 FARDDRLVGVTVLQLRDIAQAG  102 (120)
T ss_pred             ccCCCCEEEEEEEEHHHCcCCC
Confidence            8878999999999999988654

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.88  E-value=9.3e-22  Score=135.24  Aligned_cols=91  Identities=22%  Similarity=0.387  Sum_probs=79.9

Q ss_pred             cEEEEEEEEEeEcCCCCC--CCCCCcEEEEEECC-----E-EeeeeeeCCCCCeEecEEEEEEeCCCCcEEEEEE-eCCC
Q 031204            5 MGLLRVHVLRGVNLAVRD--VVSSDPYVVIKMGK-----Q-LKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVY-DKDT   75 (164)
Q Consensus         5 ~g~L~v~v~~a~~L~~~~--~~~~dpyv~v~~~~-----~-~~T~~~~~t~~P~w~e~~~f~~~~~~~~l~i~v~-d~~~   75 (164)
                      .|.|.|+|++|+||++.+  .+.+||||++++..     . .+|++++++.||+|||+|.|.+...+..|.|+|| |++.
T Consensus        28 ~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~l~~~~L~v~V~~d~~~  107 (146)
T cd04028          28 KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVSPTGKTLQVIVWGDYGR  107 (146)
T ss_pred             CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEcCCCCEEEEEEEeCCCC
Confidence            478999999999999864  67899999999953     2 8999999999999999999999855677999999 5788


Q ss_pred             CCCCceeEEEEEechhhhhh
Q 031204           76 FSLDDKMGDAEFYITPFLEA   95 (164)
Q Consensus        76 ~~~~~~lG~~~v~l~~l~~~   95 (164)
                      ++++++||++.|+|+++..+
T Consensus       108 ~~~~~~iG~~~i~L~~l~~~  127 (146)
T cd04028         108 MDKKVFMGVAQILLDDLDLS  127 (146)
T ss_pred             CCCCceEEEEEEEcccccCC
Confidence            88899999999999987543

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=99.88  E-value=7.5e-22  Score=132.45  Aligned_cols=91  Identities=25%  Similarity=0.335  Sum_probs=80.4

Q ss_pred             cEEEEEEEEEeEcCCCCCCCCCCcEEEEEECC-----E-EeeeeeeCCCCCeEecEEEEEEeC----CCCcEEEEEEeCC
Q 031204            5 MGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGK-----Q-LKTRVVKNNVNPEWNEDLTLSISD----SNLPIKLTVYDKD   74 (164)
Q Consensus         5 ~g~L~v~v~~a~~L~~~~~~~~dpyv~v~~~~-----~-~~T~~~~~t~~P~w~e~~~f~~~~----~~~~l~i~v~d~~   74 (164)
                      .+.|.|+|++|++|++.+.+.+||||++++.+     . ++|++++++.||.|||+|.|.+..    ....|.|+|||++
T Consensus        12 ~~~L~V~Vi~A~~L~~~~~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~d   91 (122)
T cd08381          12 NGTLFVMVMHAKNLPLLDGSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHD   91 (122)
T ss_pred             CCEEEEEEEEeeCCCCCCCCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeCC
Confidence            57899999999999988877899999999963     2 899999999999999999999732    2456999999999


Q ss_pred             CCCCCceeEEEEEechhhhhh
Q 031204           75 TFSLDDKMGDAEFYITPFLEA   95 (164)
Q Consensus        75 ~~~~~~~lG~~~v~l~~l~~~   95 (164)
                      .++++++||++.+++.++...
T Consensus        92 ~~~~~~~lG~~~i~l~~l~~~  112 (122)
T cd08381          92 SLVENEFLGGVCIPLKKLDLS  112 (122)
T ss_pred             CCcCCcEEEEEEEeccccccC
Confidence            998999999999999988754

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut

>cd08677 C2A_Synaptotagmin-13 C2 domain

Probab=99.88  E-value=6.5e-22  Score=130.72  Aligned_cols=90  Identities=18%  Similarity=0.294  Sum_probs=78.7

Q ss_pred             ccEEEEEEEEEeEcCCCCCCCCCCcEEEEEECC----E-EeeeeeeCCCCCeEecEEEEEEeC---CCCcEEEEEEeCCC
Q 031204            4 LMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGK----Q-LKTRVVKNNVNPEWNEDLTLSISD---SNLPIKLTVYDKDT   75 (164)
Q Consensus         4 ~~g~L~v~v~~a~~L~~~~~~~~dpyv~v~~~~----~-~~T~~~~~t~~P~w~e~~~f~~~~---~~~~l~i~v~d~~~   75 (164)
                      ..|.|+|+|++|++|+ . .+.+||||++++..    . .+|++.++|.||.|||+|.|.+..   ++..|.|+|||+|.
T Consensus        12 ~~~~L~V~vikA~~L~-~-~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~d~Dr   89 (118)
T cd08677          12 QKAELHVNILEAENIS-V-DAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLRCCDR   89 (118)
T ss_pred             cCCEEEEEEEEecCCC-C-CCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEEeCCC
Confidence            4689999999999998 3 35699999999964    2 899999999999999999999864   24569999999999


Q ss_pred             CCCCceeEEEEEechhhhhh
Q 031204           76 FSLDDKMGDAEFYITPFLEA   95 (164)
Q Consensus        76 ~~~~~~lG~~~v~l~~l~~~   95 (164)
                      ++++++||++.++++++...
T Consensus        90 fs~~d~IG~v~l~l~~~~~~  109 (118)
T cd08677          90 FSRHSTLGELRLKLADVSMM  109 (118)
T ss_pred             CCCCceEEEEEEccccccCC
Confidence            99999999999999876443

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain

>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

Probab=99.88  E-value=5.2e-21  Score=128.98  Aligned_cols=114  Identities=26%  Similarity=0.435  Sum_probs=95.9

Q ss_pred             EEEEEEEEeEcCCCCC-CCCCCcEEEEEECC---E-EeeeeeeCCCCCeEecEEEEEEeCC-CCcEEEEEEeCCCCCCCc
Q 031204            7 LLRVHVLRGVNLAVRD-VVSSDPYVVIKMGK---Q-LKTRVVKNNVNPEWNEDLTLSISDS-NLPIKLTVYDKDTFSLDD   80 (164)
Q Consensus         7 ~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~---~-~~T~~~~~t~~P~w~e~~~f~~~~~-~~~l~i~v~d~~~~~~~~   80 (164)
                      .|+|+|++|++|+..+ .+.+||||++.+.+   . ++|+++.++.||.|||+|.|.+..+ ...|.|+|||++..++++
T Consensus         2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~~   81 (126)
T cd04043           2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHD   81 (126)
T ss_pred             EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence            5899999999999988 78999999999863   3 8999999999999999999999764 456999999999988999


Q ss_pred             eeEEEEEechhhhhhhcccccCCCCceEEEEeccCCCccccccceeEeeCCeEEEEEeEEecccceeeEEEEEEEE
Q 031204           81 KMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRNVEVGEVKIQLEWI  156 (164)
Q Consensus        81 ~lG~~~v~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~G~l~l~l~~~  156 (164)
                      +||++.+++.++......                                  ...+.|+.|.  ++|+|++++.+.
T Consensus        82 ~iG~~~i~l~~~~~~~~~----------------------------------~~~~~w~~l~--~~g~i~l~~~~~  121 (126)
T cd04043          82 LCGRASLKLDPKRFGDDG----------------------------------LPREIWLDLD--TQGRLLLRVSME  121 (126)
T ss_pred             eEEEEEEecCHHHcCCCC----------------------------------CCceEEEEcC--CCCeEEEEEEEe
Confidence            999999999876543200                                  1237899997  589999998764

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap

>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins

Probab=99.87  E-value=3.9e-21  Score=125.72  Aligned_cols=85  Identities=26%  Similarity=0.477  Sum_probs=78.1

Q ss_pred             EEEEEEEeEcCCCCC-CCCCCcEEEEEECCE-EeeeeeeCCCCCeEecEEEEEEeCC-CCcEEEEEEeCCCCCCCceeEE
Q 031204            8 LRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQ-LKTRVVKNNVNPEWNEDLTLSISDS-NLPIKLTVYDKDTFSLDDKMGD   84 (164)
Q Consensus         8 L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~~-~~T~~~~~t~~P~w~e~~~f~~~~~-~~~l~i~v~d~~~~~~~~~lG~   84 (164)
                      |.|+|++|++|+..+ .+.+||||+++++++ ++|+++.++.||.|||+|.|.+..+ .+.|.|+|||++.   +++||+
T Consensus         2 L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~---~~~iG~   78 (105)
T cd04050           2 LFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT---GKSLGS   78 (105)
T ss_pred             EEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC---CCccEE
Confidence            789999999999888 789999999999999 9999999999999999999999875 4569999999886   789999


Q ss_pred             EEEechhhhhh
Q 031204           85 AEFYITPFLEA   95 (164)
Q Consensus        85 ~~v~l~~l~~~   95 (164)
                      +.+++.++...
T Consensus        79 ~~i~l~~l~~~   89 (105)
T cd04050          79 LTLPLSELLKE   89 (105)
T ss_pred             EEEEHHHhhcc
Confidence            99999998764

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5

Probab=99.87  E-value=2.6e-21  Score=130.32  Aligned_cols=94  Identities=33%  Similarity=0.406  Sum_probs=82.1

Q ss_pred             cccEEEEEEEEEeEcCCCCC--CCCCCcEEEEEECC----E--EeeeeeeCCCCCeEecEEEEEEeCC---CCcEEEEEE
Q 031204            3 NLMGLLRVHVLRGVNLAVRD--VVSSDPYVVIKMGK----Q--LKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTVY   71 (164)
Q Consensus         3 ~~~g~L~v~v~~a~~L~~~~--~~~~dpyv~v~~~~----~--~~T~~~~~t~~P~w~e~~~f~~~~~---~~~l~i~v~   71 (164)
                      ...|.|.|+|++|+||++.+  .+.+||||++++.+    .  ++|++++++.||.|||+|.|.+...   +..|.|+||
T Consensus        12 ~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V~   91 (125)
T cd04029          12 YKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSVW   91 (125)
T ss_pred             CCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEEE
Confidence            46789999999999999876  47899999999852    2  8999999999999999999998642   456999999


Q ss_pred             eCCCCCCCceeEEEEEechhhhhhh
Q 031204           72 DKDTFSLDDKMGDAEFYITPFLEAL   96 (164)
Q Consensus        72 d~~~~~~~~~lG~~~v~l~~l~~~~   96 (164)
                      |++..+++++||++.+++.++....
T Consensus        92 d~~~~~~~~~lG~~~i~l~~~~~~~  116 (125)
T cd04029          92 HYDRFGRNTFLGEVEIPLDSWNFDS  116 (125)
T ss_pred             ECCCCCCCcEEEEEEEeCCcccccC
Confidence            9999999999999999999886653

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2

>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins

Probab=99.87  E-value=5.1e-21  Score=126.40  Aligned_cols=99  Identities=21%  Similarity=0.404  Sum_probs=87.2

Q ss_pred             CCCCCcEEEEEECCE--EeeeeeeCCCCCeEecEEEEEEeCCC-CcEEEEEEeCCCCCCCceeEEEEEechhhhhhhccc
Q 031204           23 VVSSDPYVVIKMGKQ--LKTRVVKNNVNPEWNEDLTLSISDSN-LPIKLTVYDKDTFSLDDKMGDAEFYITPFLEALKMR   99 (164)
Q Consensus        23 ~~~~dpyv~v~~~~~--~~T~~~~~t~~P~w~e~~~f~~~~~~-~~l~i~v~d~~~~~~~~~lG~~~v~l~~l~~~~~~~   99 (164)
                      +|.+||||++.++++  ++|+++.++.||.|||.|.|.+.++. ..|.|.|||++.+ ++++||.+.++|+++.....  
T Consensus        10 ~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l~~~~~--   86 (111)
T cd04052          10 TGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDR-HDPVLGSVSISLNDLIDATS--   86 (111)
T ss_pred             CCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCC-CCCeEEEEEecHHHHHhhhh--
Confidence            688999999999886  89999999999999999999997654 5699999999998 99999999999999865421  


Q ss_pred             ccCCCCceEEEEeccCCCccccccceeEeeCCeEEEEEeEEecccceeeEEEEEEEEec
Q 031204          100 LEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRNVEVGEVKIQLEWIDI  158 (164)
Q Consensus       100 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~G~l~l~l~~~~~  158 (164)
                                                        ..+.|++|.+.+.|+|+++++|.|+
T Consensus        87 ----------------------------------~~~~w~~L~~~~~G~i~~~~~~~p~  111 (111)
T cd04052          87 ----------------------------------VGQQWFPLSGNGQGRIRISALWKPV  111 (111)
T ss_pred             ----------------------------------ccceeEECCCCCCCEEEEEEEEecC
Confidence                                              1278999998889999999999985

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.87  E-value=6.8e-21  Score=128.69  Aligned_cols=88  Identities=30%  Similarity=0.539  Sum_probs=78.4

Q ss_pred             EEEEEEEEEeEcCCCCC-CCCCCcEEEEEECCE-EeeeeeeCCCCCeEecEEEEEEeCCCCcEEEEEEeCCCC-------
Q 031204            6 GLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQ-LKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTF-------   76 (164)
Q Consensus         6 g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~~-~~T~~~~~t~~P~w~e~~~f~~~~~~~~l~i~v~d~~~~-------   76 (164)
                      ..|+|+|++|++|+..+ .+.+||||++++++. ++|+++.++.+|.|||+|.|.+..+...|.|+|||++..       
T Consensus         1 ~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~~~~l~i~v~d~d~~~~~~~~~   80 (127)
T cd04027           1 AKISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSSDRIKVRVWDEDDDIKSRLKQ   80 (127)
T ss_pred             CeEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCCCCEEEEEEEECCCCcccccce
Confidence            36899999999999988 788999999999888 999999999999999999999876666799999999852       


Q ss_pred             ----CCCceeEEEEEechhhh
Q 031204           77 ----SLDDKMGDAEFYITPFL   93 (164)
Q Consensus        77 ----~~~~~lG~~~v~l~~l~   93 (164)
                          +.+++||.+.+++.++.
T Consensus        81 ~~~~~~~~~iG~~~i~l~~~~  101 (127)
T cd04027          81 KFTRESDDFLGQTIIEVRTLS  101 (127)
T ss_pred             eccccCCCcceEEEEEhHHcc
Confidence                46899999999998763

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev

>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.87  E-value=8.5e-21  Score=126.62  Aligned_cols=87  Identities=22%  Similarity=0.365  Sum_probs=78.0

Q ss_pred             cEEEEEEEEEeEcCCCCCCCCCCcEEEEEECCE-EeeeeeeCCCCCeEecEEEEEEeCCCCcEEEEEEeCCCCCCCceeE
Q 031204            5 MGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQ-LKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSLDDKMG   83 (164)
Q Consensus         5 ~g~L~v~v~~a~~L~~~~~~~~dpyv~v~~~~~-~~T~~~~~t~~P~w~e~~~f~~~~~~~~l~i~v~d~~~~~~~~~lG   83 (164)
                      ++.|.|+|++|++|+..+  ..||||.+.++++ .+|++.++ .||.|||+|.|.+.+.+..|.|+|||++.+ +|++||
T Consensus         1 m~~L~V~Vv~Ar~L~~~~--~~dPYV~Ik~g~~k~kT~v~~~-~nP~WnE~F~F~~~~~~~~L~v~V~dkd~~-~DD~lG   76 (127)
T cd08394           1 MSLLCVLVKKAKLDGAPD--KFNTYVTLKVQNVKSTTIAVRG-SQPCWEQDFMFEINRLDLGLVIELWNKGLI-WDTLVG   76 (127)
T ss_pred             CceEEEEEEEeeCCCCCC--CCCCeEEEEECCEEeEeeECCC-CCCceeeEEEEEEcCCCCEEEEEEEeCCCc-CCCceE
Confidence            478999999999997654  5689999999998 89999977 599999999999987777799999999976 999999


Q ss_pred             EEEEechhhhhh
Q 031204           84 DAEFYITPFLEA   95 (164)
Q Consensus        84 ~~~v~l~~l~~~   95 (164)
                      ++.++|.++..+
T Consensus        77 ~v~i~L~~v~~~   88 (127)
T cd08394          77 TVWIPLSTIRQS   88 (127)
T ss_pred             EEEEEhHHcccC
Confidence            999999998765

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8

Probab=99.86  E-value=4.4e-21  Score=129.03  Aligned_cols=94  Identities=26%  Similarity=0.485  Sum_probs=82.9

Q ss_pred             cccEEEEEEEEEeEcCCCCC-CCCCCcEEEEEECC---E-EeeeeeeCCCCCeEecEEEEEEeCC---CCcEEEEEEeCC
Q 031204            3 NLMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGK---Q-LKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTVYDKD   74 (164)
Q Consensus         3 ~~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~---~-~~T~~~~~t~~P~w~e~~~f~~~~~---~~~l~i~v~d~~   74 (164)
                      ...|.|.|+|++|++|+..+ .+.+||||++++..   . ++|++++++.||.|||+|.|.+...   ...|.|+|||++
T Consensus        13 ~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~   92 (124)
T cd08387          13 KDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDFD   92 (124)
T ss_pred             CCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEECC
Confidence            45689999999999999988 78899999999942   3 9999999999999999999998643   457999999999


Q ss_pred             CCCCCceeEEEEEechhhhhhh
Q 031204           75 TFSLDDKMGDAEFYITPFLEAL   96 (164)
Q Consensus        75 ~~~~~~~lG~~~v~l~~l~~~~   96 (164)
                      .++++++||++.++++++..+.
T Consensus        93 ~~~~~~~iG~~~i~l~~~~~~~  114 (124)
T cd08387          93 QFSRDECIGVVELPLAEVDLSE  114 (124)
T ss_pred             CCCCCceeEEEEEecccccCCC
Confidence            9989999999999999887543

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv

>cd04041 C2A_fungal C2 domain first repeat; fungal group

Probab=99.86  E-value=4.9e-21  Score=126.48  Aligned_cols=90  Identities=30%  Similarity=0.589  Sum_probs=80.7

Q ss_pred             EEEEEEEEEeEcCCCCC-C-CCCCcEEEEEECC---E-EeeeeeeCCCCCeEecEEEEEEeCC----CCcEEEEEEeCCC
Q 031204            6 GLLRVHVLRGVNLAVRD-V-VSSDPYVVIKMGK---Q-LKTRVVKNNVNPEWNEDLTLSISDS----NLPIKLTVYDKDT   75 (164)
Q Consensus         6 g~L~v~v~~a~~L~~~~-~-~~~dpyv~v~~~~---~-~~T~~~~~t~~P~w~e~~~f~~~~~----~~~l~i~v~d~~~   75 (164)
                      |+|+|+|++|++|+..+ . +.+||||++++..   . ++|++++++.||.|||+|.|.+...    ...|.|+|||++.
T Consensus         1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~   80 (111)
T cd04041           1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR   80 (111)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence            78999999999999988 6 8999999999853   3 8999999999999999999988643    3569999999999


Q ss_pred             CCCCceeEEEEEechhhhhh
Q 031204           76 FSLDDKMGDAEFYITPFLEA   95 (164)
Q Consensus        76 ~~~~~~lG~~~v~l~~l~~~   95 (164)
                      ++.|++||++.+++.++...
T Consensus        81 ~~~dd~lG~~~i~l~~l~~~  100 (111)
T cd04041          81 FTADDRLGRVEIDLKELIED  100 (111)
T ss_pred             CCCCCcceEEEEEHHHHhcC
Confidence            98999999999999998743

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan

>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins

Probab=99.86  E-value=1.2e-20  Score=126.75  Aligned_cols=87  Identities=30%  Similarity=0.510  Sum_probs=78.6

Q ss_pred             EEEEEEEeEcCCCCC-CCCCCcEEEEEEC-CE-EeeeeeeCCCCCeEecEEEEEEeCCCCcEEEEEEeCCCCCC--Ccee
Q 031204            8 LRVHVLRGVNLAVRD-VVSSDPYVVIKMG-KQ-LKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSL--DDKM   82 (164)
Q Consensus         8 L~v~v~~a~~L~~~~-~~~~dpyv~v~~~-~~-~~T~~~~~t~~P~w~e~~~f~~~~~~~~l~i~v~d~~~~~~--~~~l   82 (164)
                      |+|+|++|++|+..+ ++.+||||++.++ .+ ++|++++++.||.|||+|.|.+.. ...|.|+|||++.+++  +++|
T Consensus         2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~-~~~l~i~V~d~~~~~~~~d~~l   80 (123)
T cd08382           2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP-SSIITIQVFDQKKFKKKDQGFL   80 (123)
T ss_pred             eEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC-CCEEEEEEEECCCCCCCCCceE
Confidence            789999999999888 7899999999997 45 999999999999999999999964 6779999999998865  5799


Q ss_pred             EEEEEechhhhhh
Q 031204           83 GDAEFYITPFLEA   95 (164)
Q Consensus        83 G~~~v~l~~l~~~   95 (164)
                      |++.+++.++...
T Consensus        81 G~~~i~l~~l~~~   93 (123)
T cd08382          81 GCVRIRANAVLPL   93 (123)
T ss_pred             eEEEEEHHHcccc
Confidence            9999999998754

A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are

>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin

Probab=99.86  E-value=2.1e-20  Score=127.59  Aligned_cols=119  Identities=18%  Similarity=0.321  Sum_probs=94.2

Q ss_pred             EEEEEEEEeEcCCCCC-CCCCCcEEEEEECCE-EeeeeeeCCCCCeEecEEEEEEeCC----------CCcEEEEEEeCC
Q 031204            7 LLRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQ-LKTRVVKNNVNPEWNEDLTLSISDS----------NLPIKLTVYDKD   74 (164)
Q Consensus         7 ~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~~-~~T~~~~~t~~P~w~e~~~f~~~~~----------~~~l~i~v~d~~   74 (164)
                      +|+|+|++|++|+..+ .+.+||||++.+++. ++|++++++.||.|||.|.|.+...          ...|.|+|||++
T Consensus         2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d   81 (135)
T cd04017           2 QLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQD   81 (135)
T ss_pred             EEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeCc
Confidence            6899999999999988 889999999999988 9999999999999999999985321          135899999999


Q ss_pred             CCCCCceeEEEEEe-chhhhhhhcccccCCCCceEEEEeccCCCccccccceeEeeCCeEEEEEeEEecc--cceeeEEE
Q 031204           75 TFSLDDKMGDAEFY-ITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRN--VEVGEVKI  151 (164)
Q Consensus        75 ~~~~~~~lG~~~v~-l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~--~~~G~l~l  151 (164)
                      ..++|++||++.+. +..+....        .+                          .....|++|..  ...|+|.|
T Consensus        82 ~~~~d~~iG~~~i~~~~~~~~~~--------~~--------------------------~~~~~W~~L~~~~~~~Geil~  127 (135)
T cd04017          82 SVGKDEFLGRSVAKPLVKLDLEE--------DF--------------------------PPKLQWFPIYKGGQSAGELLA  127 (135)
T ss_pred             CCCCCccceEEEeeeeeecccCC--------CC--------------------------CCCceEEEeecCCCchhheeE
Confidence            99899999999873 32222110        00                          02367888763  35799999


Q ss_pred             EEEEEecC
Q 031204          152 QLEWIDIP  159 (164)
Q Consensus       152 ~l~~~~~~  159 (164)
                      .++++++.
T Consensus       128 ~~~~~~~~  135 (135)
T cd04017         128 AFELIEVT  135 (135)
T ss_pred             EeEEEEeC
Confidence            99998863

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene

Probab=99.86  E-value=1e-20  Score=127.20  Aligned_cols=91  Identities=34%  Similarity=0.564  Sum_probs=82.6

Q ss_pred             EEEEEEEEEeEcCCCCC-CCCCCcEEEEEECCE-EeeeeeeC-CCCCeEecEEEEEEeCC----CCcEEEEEEeCCCCCC
Q 031204            6 GLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQ-LKTRVVKN-NVNPEWNEDLTLSISDS----NLPIKLTVYDKDTFSL   78 (164)
Q Consensus         6 g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~~-~~T~~~~~-t~~P~w~e~~~f~~~~~----~~~l~i~v~d~~~~~~   78 (164)
                      |.|.|+|++|++|+..+ .+.+||||++.+.++ ++|++..+ +.||.|||+|.|.+..+    ...|.|+|||.+.+++
T Consensus         1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~   80 (124)
T cd04049           1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSD   80 (124)
T ss_pred             CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCCC
Confidence            78999999999999888 789999999999988 89998885 89999999999999866    4569999999999889


Q ss_pred             CceeEEEEEechhhhhhh
Q 031204           79 DDKMGDAEFYITPFLEAL   96 (164)
Q Consensus        79 ~~~lG~~~v~l~~l~~~~   96 (164)
                      +++||++.+++.++..+.
T Consensus        81 d~~iG~~~i~l~~l~~~~   98 (124)
T cd04049          81 DDFIGEATIHLKGLFEEG   98 (124)
T ss_pred             CCeEEEEEEEhHHhhhCC
Confidence            999999999999998754

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai

>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins

Probab=99.86  E-value=2.2e-20  Score=124.99  Aligned_cols=90  Identities=28%  Similarity=0.516  Sum_probs=83.6

Q ss_pred             EEEEEEEEEeEcCCCCC-CCCCCcEEEEEECCE--EeeeeeeCCCCCeEecEEEEEEeCCCCcEEEEEEeCCCCCCCcee
Q 031204            6 GLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQ--LKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSLDDKM   82 (164)
Q Consensus         6 g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~~--~~T~~~~~t~~P~w~e~~~f~~~~~~~~l~i~v~d~~~~~~~~~l   82 (164)
                      |.|.|+|++|++|+..+ .+.+||||++.+.+.  ++|+++.++.||.|||.|.|.+..+.+.|.|+|||++..+++++|
T Consensus         1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~~~~L~v~v~d~~~~~~d~~I   80 (120)
T cd04045           1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSPNQKITLEVMDYEKVGKDRSL   80 (120)
T ss_pred             CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCCCCEEEEEEEECCCCCCCCee
Confidence            68999999999999988 789999999999875  999999999999999999999987777899999999999899999


Q ss_pred             EEEEEechhhhhh
Q 031204           83 GDAEFYITPFLEA   95 (164)
Q Consensus        83 G~~~v~l~~l~~~   95 (164)
                      |++.+++.++..+
T Consensus        81 G~~~~~l~~l~~~   93 (120)
T cd04045          81 GSVEINVSDLIKK   93 (120)
T ss_pred             eEEEEeHHHhhCC
Confidence            9999999998875

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone

Probab=99.86  E-value=8.9e-21  Score=125.04  Aligned_cols=88  Identities=34%  Similarity=0.621  Sum_probs=80.0

Q ss_pred             EEEEEEEeEcCCCCC--CCCCCcEEEEEECCE-EeeeeeeCCCCCeE-ecEEEEEEeCC---CCcEEEEEEeCCCCCCCc
Q 031204            8 LRVHVLRGVNLAVRD--VVSSDPYVVIKMGKQ-LKTRVVKNNVNPEW-NEDLTLSISDS---NLPIKLTVYDKDTFSLDD   80 (164)
Q Consensus         8 L~v~v~~a~~L~~~~--~~~~dpyv~v~~~~~-~~T~~~~~t~~P~w-~e~~~f~~~~~---~~~l~i~v~d~~~~~~~~   80 (164)
                      |.|+|++|++|+..+  .+.+||||++++++. ++|+++.++.||.| ||+|.|.+...   .+.|.|+|||++.+++++
T Consensus         1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~~~   80 (110)
T cd08688           1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSAND   80 (110)
T ss_pred             CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCCCC
Confidence            689999999999877  578999999999988 99999999999999 99999999653   357999999999998999


Q ss_pred             eeEEEEEechhhhhh
Q 031204           81 KMGDAEFYITPFLEA   95 (164)
Q Consensus        81 ~lG~~~v~l~~l~~~   95 (164)
                      +||++.+++.++...
T Consensus        81 ~iG~~~~~l~~l~~~   95 (110)
T cd08688          81 AIGKVYIDLNPLLLK   95 (110)
T ss_pred             ceEEEEEeHHHhccc
Confidence            999999999998773

The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a

>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

Probab=99.86  E-value=8.2e-21  Score=127.67  Aligned_cols=93  Identities=28%  Similarity=0.433  Sum_probs=81.7

Q ss_pred             ccEEEEEEEEEeEcCCCCC-CCCCCcEEEEEECC---E-EeeeeeeCCCCCeEecEEEEEEeCC---CCcEEEEEEeCCC
Q 031204            4 LMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGK---Q-LKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTVYDKDT   75 (164)
Q Consensus         4 ~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~---~-~~T~~~~~t~~P~w~e~~~f~~~~~---~~~l~i~v~d~~~   75 (164)
                      ..+.|.|+|++|+||+..+ .+.+||||++.+.+   . ++|++++++.||.|||+|.|.+...   ...|.|+|||++.
T Consensus        14 ~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d~   93 (124)
T cd08385          14 QSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFDR   93 (124)
T ss_pred             CCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCCC
Confidence            4679999999999999888 78899999999863   2 8999999999999999999998642   4569999999999


Q ss_pred             CCCCceeEEEEEechhhhhhh
Q 031204           76 FSLDDKMGDAEFYITPFLEAL   96 (164)
Q Consensus        76 ~~~~~~lG~~~v~l~~l~~~~   96 (164)
                      ++++++||++.++++++..+.
T Consensus        94 ~~~~~~lG~~~i~l~~~~~~~  114 (124)
T cd08385          94 FSKHDLIGEVRVPLLTVDLGH  114 (124)
T ss_pred             CCCCceeEEEEEecCcccCCC
Confidence            989999999999999876543

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and

>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2

Probab=99.85  E-value=5.9e-21  Score=128.64  Aligned_cols=92  Identities=28%  Similarity=0.418  Sum_probs=80.8

Q ss_pred             ccEEEEEEEEEeEcCCCCC-C-CCCCcEEEEEECC-----E-EeeeeeeCCCCCeEecEEEEEEeCC---CCcEEEEEEe
Q 031204            4 LMGLLRVHVLRGVNLAVRD-V-VSSDPYVVIKMGK-----Q-LKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTVYD   72 (164)
Q Consensus         4 ~~g~L~v~v~~a~~L~~~~-~-~~~dpyv~v~~~~-----~-~~T~~~~~t~~P~w~e~~~f~~~~~---~~~l~i~v~d   72 (164)
                      ..+.|.|+|++|+||++.+ . +.+||||++++.+     . ++|++++++.||.|||+|.|.+...   ...|.|+|||
T Consensus        13 ~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~d   92 (125)
T cd08393          13 KLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVWH   92 (125)
T ss_pred             CCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEEe
Confidence            4578999999999999988 4 7899999999952     2 8999999999999999999998632   3569999999


Q ss_pred             CCCCCCCceeEEEEEechhhhhh
Q 031204           73 KDTFSLDDKMGDAEFYITPFLEA   95 (164)
Q Consensus        73 ~~~~~~~~~lG~~~v~l~~l~~~   95 (164)
                      ++.++++++||++.++|.++...
T Consensus        93 ~~~~~~~~~iG~~~i~L~~~~~~  115 (125)
T cd08393          93 RDSLGRNSFLGEVEVDLGSWDWS  115 (125)
T ss_pred             CCCCCCCcEeEEEEEecCccccC
Confidence            99998999999999999988554

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety

>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3)

Probab=99.85  E-value=1.9e-20  Score=129.32  Aligned_cols=88  Identities=19%  Similarity=0.325  Sum_probs=77.2

Q ss_pred             EEEEEEEEeEcCCCCCCCCCCcEEEEEECC-----E-EeeeeeeCCCCCeEecEEEEEEeC---------------C-CC
Q 031204            7 LLRVHVLRGVNLAVRDVVSSDPYVVIKMGK-----Q-LKTRVVKNNVNPEWNEDLTLSISD---------------S-NL   64 (164)
Q Consensus         7 ~L~v~v~~a~~L~~~~~~~~dpyv~v~~~~-----~-~~T~~~~~t~~P~w~e~~~f~~~~---------------~-~~   64 (164)
                      .|.|+|++|++|+. ..|.+||||++.+.+     . .+|+++.++.||.|||+|.|.+..               . ..
T Consensus         1 kL~V~Vi~ArnL~~-~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~   79 (148)
T cd04010           1 KLSVRVIECSDLAL-KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKL   79 (148)
T ss_pred             CEEEEEEeCcCCCC-CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEE
Confidence            48999999999998 568899999999975     4 899999999999999999999941               1 24


Q ss_pred             cEEEEEEeCCCCCCCceeEEEEEechhhhhh
Q 031204           65 PIKLTVYDKDTFSLDDKMGDAEFYITPFLEA   95 (164)
Q Consensus        65 ~l~i~v~d~~~~~~~~~lG~~~v~l~~l~~~   95 (164)
                      .|.|.|||++..++++|||++.|++..+..+
T Consensus        80 ~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~  110 (148)
T cd04010          80 ELRVDLWHASMGGGDVFLGEVRIPLRGLDLQ  110 (148)
T ss_pred             EEEEEEEcCCCCCCCceeEEEEEeccccccc
Confidence            5899999999888999999999999988765

RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd04032 C2_Perforin C2 domain of Perforin

Probab=99.85  E-value=1.8e-20  Score=126.13  Aligned_cols=92  Identities=28%  Similarity=0.384  Sum_probs=81.0

Q ss_pred             cccEEEEEEEEEeEcCCCCCCCCCCcEEEEEECCE-EeeeeeeCCCCCeEecEEEEEEeC--CCCcEEEEEEeCCCCCCC
Q 031204            3 NLMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQ-LKTRVVKNNVNPEWNEDLTLSISD--SNLPIKLTVYDKDTFSLD   79 (164)
Q Consensus         3 ~~~g~L~v~v~~a~~L~~~~~~~~dpyv~v~~~~~-~~T~~~~~t~~P~w~e~~~f~~~~--~~~~l~i~v~d~~~~~~~   79 (164)
                      ..+|+|+|+|++|++|+....+.+|||++++++++ ++|++++++.||.|||+|.|....  ....|.|+|||++.+++|
T Consensus        25 ~~~~~L~V~V~~A~~L~~d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~~s~d  104 (127)
T cd04032          25 RGLATLTVTVLRATGLWGDYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDNGWDD  104 (127)
T ss_pred             CCcEEEEEEEEECCCCCcCcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCCCCCC
Confidence            46799999999999998433778999999999988 999999999999999999997533  356799999999999999


Q ss_pred             ceeEEEEEechhhhh
Q 031204           80 DKMGDAEFYITPFLE   94 (164)
Q Consensus        80 ~~lG~~~v~l~~l~~   94 (164)
                      ++||++.+++.....
T Consensus       105 d~IG~~~i~l~~~~~  119 (127)
T cd04032         105 DLLGTCSVVPEAGVH  119 (127)
T ss_pred             CeeEEEEEEecCCce
Confidence            999999999986654

Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few

>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family

Probab=99.84  E-value=1.1e-20  Score=126.31  Aligned_cols=92  Identities=22%  Similarity=0.347  Sum_probs=79.3

Q ss_pred             ccEEEEEEEEEeEcCCCCCCCCCCcEEEEEECC----E--EeeeeeeCCCCCeEecEEEEEEeCC--CCcEEEEEEeCCC
Q 031204            4 LMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGK----Q--LKTRVVKNNVNPEWNEDLTLSISDS--NLPIKLTVYDKDT   75 (164)
Q Consensus         4 ~~g~L~v~v~~a~~L~~~~~~~~dpyv~v~~~~----~--~~T~~~~~t~~P~w~e~~~f~~~~~--~~~l~i~v~d~~~   75 (164)
                      ..+.|.|+|++|+||++++.+.+||||++++.+    .  ++|++.+++.||.|||+|.|.+...  ...|.|+|||++.
T Consensus        10 ~~~~L~V~Vi~ar~L~~~~~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~~   89 (119)
T cd08685          10 QNRKLTLHVLEAKGLRSTNSGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKLS   89 (119)
T ss_pred             cCCEEEEEEEEEECCCCCCCCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCCC
Confidence            357899999999999988877899999999974    2  7899999999999999999998643  3458999999988


Q ss_pred             CC-CCceeEEEEEechhhhhh
Q 031204           76 FS-LDDKMGDAEFYITPFLEA   95 (164)
Q Consensus        76 ~~-~~~~lG~~~v~l~~l~~~   95 (164)
                      .+ ++++||.+.+++.++..+
T Consensus        90 ~~~~~~~lG~~~i~l~~~~~~  110 (119)
T cd08685          90 KSRDSGLLGCMSFGVKSIVNQ  110 (119)
T ss_pred             CcCCCEEEEEEEecHHHhccC
Confidence            75 478999999999998743

This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho

>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3

Probab=99.84  E-value=2e-20  Score=126.39  Aligned_cols=92  Identities=23%  Similarity=0.290  Sum_probs=80.8

Q ss_pred             ccEEEEEEEEEeEcCCCCC-C-CCCCcEEEEEECC-----E-EeeeeeeCCCCCeEecEEEEEEeCC---CCcEEEEEEe
Q 031204            4 LMGLLRVHVLRGVNLAVRD-V-VSSDPYVVIKMGK-----Q-LKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTVYD   72 (164)
Q Consensus         4 ~~g~L~v~v~~a~~L~~~~-~-~~~dpyv~v~~~~-----~-~~T~~~~~t~~P~w~e~~~f~~~~~---~~~l~i~v~d   72 (164)
                      ..+.|.|+|++|+||++.+ . +.+||||++++.+     . .+|++++++.||+|||+|.|.+...   +..|.+.|||
T Consensus        13 ~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~~   92 (128)
T cd08392          13 RTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSVWH   92 (128)
T ss_pred             CCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEEEEe
Confidence            4578999999999999988 4 8999999999863     2 7999999999999999999998643   4579999999


Q ss_pred             CCCCCCCceeEEEEEechhhhhh
Q 031204           73 KDTFSLDDKMGDAEFYITPFLEA   95 (164)
Q Consensus        73 ~~~~~~~~~lG~~~v~l~~l~~~   95 (164)
                      .+.++++++||++.|++.++...
T Consensus        93 ~~~~~~~~~lG~~~i~L~~~~~~  115 (128)
T cd08392          93 SRTLKRRVFLGEVLIPLADWDFE  115 (128)
T ss_pred             CCCCcCcceEEEEEEEcCCcccC
Confidence            99998999999999999887543

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids

>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.84  E-value=3.6e-20  Score=124.59  Aligned_cols=88  Identities=28%  Similarity=0.447  Sum_probs=78.6

Q ss_pred             ccEEEEEEEEEeEcCCCCC-CCCCCcEEEEEECC-----E-EeeeeeeCCCCCeEecEEEEEEeC----CCCcEEEEEEe
Q 031204            4 LMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGK-----Q-LKTRVVKNNVNPEWNEDLTLSISD----SNLPIKLTVYD   72 (164)
Q Consensus         4 ~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~-----~-~~T~~~~~t~~P~w~e~~~f~~~~----~~~~l~i~v~d   72 (164)
                      ..++|.|+|++|++|+..+ .+.+||||++.+.+     . ++|++++++.||.|||+|.|.+..    ....|.|+|||
T Consensus        14 ~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d   93 (125)
T cd04031          14 VTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVWD   93 (125)
T ss_pred             CCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEEe
Confidence            4588999999999999988 78899999999974     3 899999999999999999998643    24569999999


Q ss_pred             CCCCCCCceeEEEEEechh
Q 031204           73 KDTFSLDDKMGDAEFYITP   91 (164)
Q Consensus        73 ~~~~~~~~~lG~~~v~l~~   91 (164)
                      ++..+.+++||++.+++.+
T Consensus        94 ~~~~~~~~~iG~~~i~l~~  112 (125)
T cd04031          94 YDRDGENDFLGEVVIDLAD  112 (125)
T ss_pred             CCCCCCCcEeeEEEEeccc
Confidence            9998899999999999987

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family

Probab=99.84  E-value=1.8e-19  Score=123.71  Aligned_cols=89  Identities=13%  Similarity=0.181  Sum_probs=75.9

Q ss_pred             ccEEEEEEEEEeEcCCCCCCCCCCcEEEEEECCE--EeeeeeeCCCCCeEecEEEEEEeCCCCcEEEEEEeCCC-CC---
Q 031204            4 LMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQ--LKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDT-FS---   77 (164)
Q Consensus         4 ~~g~L~v~v~~a~~L~~~~~~~~dpyv~v~~~~~--~~T~~~~~t~~P~w~e~~~f~~~~~~~~l~i~v~d~~~-~~---   77 (164)
                      ....|.|.|++|++|++++    +|||.+.+++.  .||+++.++.||.|+|+|.|....+-..+.|.||..+. .+   
T Consensus         9 ~~~sL~v~V~EAk~Lp~~~----~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~~~~l~v~v~k~~~~~~~~~   84 (146)
T cd04013           9 TENSLKLWIIEAKGLPPKK----RYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPPVSVITVNLYRESDKKKKKD   84 (146)
T ss_pred             EEEEEEEEEEEccCCCCcC----CceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCcccEEEEEEEEccCcccccc
Confidence            4567999999999998764    89999999998  79999999999999999999876666679999987543 21   


Q ss_pred             CCceeEEEEEechhhhhhh
Q 031204           78 LDDKMGDAEFYITPFLEAL   96 (164)
Q Consensus        78 ~~~~lG~~~v~l~~l~~~~   96 (164)
                      ++++||.+.|++.++..+.
T Consensus        85 ~~~~IG~V~Ip~~~l~~~~  103 (146)
T cd04013          85 KSQLIGTVNIPVTDVSSRQ  103 (146)
T ss_pred             CCcEEEEEEEEHHHhcCCC
Confidence            5789999999999988643

SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas

>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

Probab=99.83  E-value=5.3e-20  Score=123.91  Aligned_cols=90  Identities=20%  Similarity=0.386  Sum_probs=81.0

Q ss_pred             EEEEEEEEeEcCCCCC-CCCCCcEEEEEECC-E-Eeeeeee-CCCCCeEecEEEEEEeCC-----CCcEEEEEEeCCCCC
Q 031204            7 LLRVHVLRGVNLAVRD-VVSSDPYVVIKMGK-Q-LKTRVVK-NNVNPEWNEDLTLSISDS-----NLPIKLTVYDKDTFS   77 (164)
Q Consensus         7 ~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~-~-~~T~~~~-~t~~P~w~e~~~f~~~~~-----~~~l~i~v~d~~~~~   77 (164)
                      +|+|+|++|++|+..+ .+.+||||++.+++ + .+|++.. ++.||.|||.|.|.+..+     ...|.|+|||++.++
T Consensus         1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~   80 (125)
T cd04051           1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSL   80 (125)
T ss_pred             CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCC
Confidence            4899999999999888 78999999999998 6 9999976 489999999999999766     467999999999988


Q ss_pred             CCceeEEEEEechhhhhhh
Q 031204           78 LDDKMGDAEFYITPFLEAL   96 (164)
Q Consensus        78 ~~~~lG~~~v~l~~l~~~~   96 (164)
                      .+++||++.+++.++..+.
T Consensus        81 ~~~~lG~~~i~l~~l~~~~   99 (125)
T cd04051          81 GDKLIGEVRVPLKDLLDGA   99 (125)
T ss_pred             CCCcEEEEEEEHHHhhccc
Confidence            9999999999999998764

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such

>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

Probab=99.83  E-value=6.6e-20  Score=123.69  Aligned_cols=92  Identities=24%  Similarity=0.294  Sum_probs=80.6

Q ss_pred             ccEEEEEEEEEeEcCCCCC-CCCCCcEEEEEECC-----E-EeeeeeeCCCCCeEecEEEEEEeCC---CCcEEEEEEeC
Q 031204            4 LMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGK-----Q-LKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTVYDK   73 (164)
Q Consensus         4 ~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~-----~-~~T~~~~~t~~P~w~e~~~f~~~~~---~~~l~i~v~d~   73 (164)
                      ..+.|+|+|++|+||+..+ .+.+||||++.+.+     . ++|++++++.||.|||+|.|.+...   ...|.|.|||.
T Consensus        14 ~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~~~   93 (127)
T cd04030          14 QRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVKNS   93 (127)
T ss_pred             CCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEEEC
Confidence            4588999999999999998 78999999999863     3 9999999999999999999998642   35699999999


Q ss_pred             CCC--CCCceeEEEEEechhhhhh
Q 031204           74 DTF--SLDDKMGDAEFYITPFLEA   95 (164)
Q Consensus        74 ~~~--~~~~~lG~~~v~l~~l~~~   95 (164)
                      +.+  +++++||++.+++.++..+
T Consensus        94 ~~~~~~~~~~iG~~~i~l~~l~~~  117 (127)
T cd04030          94 KSFLSREKKLLGQVLIDLSDLDLS  117 (127)
T ss_pred             CcccCCCCceEEEEEEeccccccc
Confidence            875  6899999999999998554

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1

>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4

Probab=99.83  E-value=3.6e-20  Score=129.98  Aligned_cols=92  Identities=29%  Similarity=0.342  Sum_probs=80.5

Q ss_pred             ccEEEEEEEEEeEcCCCCC-CCCCCcEEEEEECC-----E-EeeeeeeCCCCCeEecEEEEEEeCC----CCcEEEEEEe
Q 031204            4 LMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGK-----Q-LKTRVVKNNVNPEWNEDLTLSISDS----NLPIKLTVYD   72 (164)
Q Consensus         4 ~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~-----~-~~T~~~~~t~~P~w~e~~~f~~~~~----~~~l~i~v~d   72 (164)
                      ..|+|.|+|++|+||+..+ .+.+||||++++..     . ++|++++++.||.|||+|.|.+...    +..|.|+|||
T Consensus        25 ~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d  104 (162)
T cd04020          25 STGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWD  104 (162)
T ss_pred             CCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEe
Confidence            5689999999999999988 88999999998842     3 9999999999999999999986422    3469999999


Q ss_pred             CCCCCCCceeEEEEEechhhhhh
Q 031204           73 KDTFSLDDKMGDAEFYITPFLEA   95 (164)
Q Consensus        73 ~~~~~~~~~lG~~~v~l~~l~~~   95 (164)
                      ++.++++++||++.+++.++...
T Consensus       105 ~d~~~~d~~lG~v~i~l~~~~~~  127 (162)
T cd04020         105 HDKLSSNDFLGGVRLGLGTGKSY  127 (162)
T ss_pred             CCCCCCCceEEEEEEeCCccccC
Confidence            99998899999999999887643

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin

>cd08680 C2_Kibra C2 domain found in Human protein Kibra

Probab=99.83  E-value=5e-20  Score=123.68  Aligned_cols=92  Identities=18%  Similarity=0.237  Sum_probs=81.3

Q ss_pred             ccEEEEEEEEEeEcCCCCC-CCCCCcEEEEEECC------E-EeeeeeeCCCCCeEecEEEEEEeC---CCCcEEEEEEe
Q 031204            4 LMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGK------Q-LKTRVVKNNVNPEWNEDLTLSISD---SNLPIKLTVYD   72 (164)
Q Consensus         4 ~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~------~-~~T~~~~~t~~P~w~e~~~f~~~~---~~~~l~i~v~d   72 (164)
                      ..+.|.|+|++|+||++.+ .+.+||||++++.+      . ++|++.+++.||+|||+|.|.+..   .+..|.|+||+
T Consensus        12 ~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~V~~   91 (124)
T cd08680          12 GDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVDVCS   91 (124)
T ss_pred             CCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEEEEe
Confidence            4578999999999999887 77899999999862      3 899999999999999999999864   34679999999


Q ss_pred             CCCCCCCceeEEEEEechhhhhh
Q 031204           73 KDTFSLDDKMGDAEFYITPFLEA   95 (164)
Q Consensus        73 ~~~~~~~~~lG~~~v~l~~l~~~   95 (164)
                      ++..+++++||.+.++++++...
T Consensus        92 ~~~~~~~~~lG~~~i~L~~~~~~  114 (124)
T cd08680          92 VGPDQQEECLGGAQISLADFESS  114 (124)
T ss_pred             CCCCCceeEEEEEEEEhhhccCC
Confidence            99998999999999999988543

Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom

>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin

Probab=99.83  E-value=1.5e-19  Score=125.14  Aligned_cols=90  Identities=29%  Similarity=0.381  Sum_probs=80.2

Q ss_pred             EEEEEEEEeEcCCCCC-C--------------CCCCcEEEEEECCE-EeeeeeeCCCCCeEecEEEEEEeCC--CCcEEE
Q 031204            7 LLRVHVLRGVNLAVRD-V--------------VSSDPYVVIKMGKQ-LKTRVVKNNVNPEWNEDLTLSISDS--NLPIKL   68 (164)
Q Consensus         7 ~L~v~v~~a~~L~~~~-~--------------~~~dpyv~v~~~~~-~~T~~~~~t~~P~w~e~~~f~~~~~--~~~l~i   68 (164)
                      .|.|+|++|++|+.++ .              +.+||||++.++++ .+|++++++.||+|||+|.|.+..+  ...|.|
T Consensus         1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~   80 (151)
T cd04018           1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKI   80 (151)
T ss_pred             CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEE
Confidence            4789999999999987 3              26899999999999 9999999999999999999997533  457999


Q ss_pred             EEEeCCCCCCCceeEEEEEechhhhhhh
Q 031204           69 TVYDKDTFSLDDKMGDAEFYITPFLEAL   96 (164)
Q Consensus        69 ~v~d~~~~~~~~~lG~~~v~l~~l~~~~   96 (164)
                      +|||++..++|++||++.+++.++....
T Consensus        81 ~v~D~d~~~~dd~iG~~~l~l~~l~~~~  108 (151)
T cd04018          81 QIRDWDRVGNDDVIGTHFIDLSKISNSG  108 (151)
T ss_pred             EEEECCCCCCCCEEEEEEEeHHHhccCC
Confidence            9999999999999999999999887643

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin

Probab=99.83  E-value=1.7e-19  Score=119.12  Aligned_cols=88  Identities=26%  Similarity=0.351  Sum_probs=78.7

Q ss_pred             EEEEEEEEEeEcCCCCCCCCCCcEEEEEECCE-EeeeeeeCCCCCeEecEEEEEEeCC-----CCcEEEEEEeCCCCCCC
Q 031204            6 GLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQ-LKTRVVKNNVNPEWNEDLTLSISDS-----NLPIKLTVYDKDTFSLD   79 (164)
Q Consensus         6 g~L~v~v~~a~~L~~~~~~~~dpyv~v~~~~~-~~T~~~~~t~~P~w~e~~~f~~~~~-----~~~l~i~v~d~~~~~~~   79 (164)
                      -.|+|+|++|++|+   .+.+||||++.++++ ++|+++.++.||.|||+|.|.+..+     +..|.|+|||++.++++
T Consensus         4 ~~l~V~v~~a~~L~---~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~~~~   80 (111)
T cd04011           4 FQVRVRVIEARQLV---GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSLRSD   80 (111)
T ss_pred             EEEEEEEEEcccCC---CCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcccccC
Confidence            46899999999998   478999999999999 9999999999999999999998643     24699999999998889


Q ss_pred             ceeEEEEEechhhhhhh
Q 031204           80 DKMGDAEFYITPFLEAL   96 (164)
Q Consensus        80 ~~lG~~~v~l~~l~~~~   96 (164)
                      ++||++.++++++..+.
T Consensus        81 ~~iG~~~i~l~~v~~~~   97 (111)
T cd04011          81 TLIGSFKLDVGTVYDQP   97 (111)
T ss_pred             CccEEEEECCccccCCC
Confidence            99999999999886643

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11

Probab=99.83  E-value=2.4e-19  Score=121.25  Aligned_cols=92  Identities=27%  Similarity=0.396  Sum_probs=79.0

Q ss_pred             ccEEEEEEEEEeEcCCCCC-C-CCCCcEEEEEECC---E-EeeeeeeCCCCCeEecEEEEE-EeC---CCCcEEEEEEeC
Q 031204            4 LMGLLRVHVLRGVNLAVRD-V-VSSDPYVVIKMGK---Q-LKTRVVKNNVNPEWNEDLTLS-ISD---SNLPIKLTVYDK   73 (164)
Q Consensus         4 ~~g~L~v~v~~a~~L~~~~-~-~~~dpyv~v~~~~---~-~~T~~~~~t~~P~w~e~~~f~-~~~---~~~~l~i~v~d~   73 (164)
                      ..+.|+|+|++|+||+..+ . +.+||||++.+.+   + .+|++++++.||.|||+|.|. +..   ....|.|+|||+
T Consensus        14 ~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~   93 (128)
T cd08388          14 EKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSF   93 (128)
T ss_pred             CCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEEc
Confidence            4578999999999999988 4 8899999999863   2 799999999999999999994 432   234699999999


Q ss_pred             CCCCCCceeEEEEEechhhhhh
Q 031204           74 DTFSLDDKMGDAEFYITPFLEA   95 (164)
Q Consensus        74 ~~~~~~~~lG~~~v~l~~l~~~   95 (164)
                      +.++++++||++.++++++...
T Consensus        94 d~~~~d~~lG~~~i~L~~l~~~  115 (128)
T cd08388          94 DRYSRDDVIGEVVCPLAGADLL  115 (128)
T ss_pred             CCCCCCceeEEEEEeccccCCC
Confidence            9999999999999999988654

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence

>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase

Probab=99.83  E-value=8.1e-19  Score=118.22  Aligned_cols=88  Identities=27%  Similarity=0.490  Sum_probs=78.3

Q ss_pred             EEEEEEEEeEcCCCCC-CCCCCcEEEEEECCE--EeeeeeeCCCCCeEecEEEEEEeCCCCcEEEEEEeCCCCCCCceeE
Q 031204            7 LLRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQ--LKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSLDDKMG   83 (164)
Q Consensus         7 ~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~~--~~T~~~~~t~~P~w~e~~~f~~~~~~~~l~i~v~d~~~~~~~~~lG   83 (164)
                      .|.|+|.+|+ |...+ .+.+||||+++++++  ++|+++.++.+|.|||+|.|.+. ..+.|.|+|||++..+.+++||
T Consensus         3 ~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~-~~~~l~~~V~d~~~~~~~~~iG   80 (125)
T cd04021           3 QLQITVESAK-LKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVT-PQSTLEFKVWSHHTLKADVLLG   80 (125)
T ss_pred             eEEEEEEeeE-CCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeC-CCCEEEEEEEeCCCCCCCcEEE
Confidence            6899999998 54444 778999999999876  99999999999999999999986 4567999999999998999999


Q ss_pred             EEEEechhhhhhh
Q 031204           84 DAEFYITPFLEAL   96 (164)
Q Consensus        84 ~~~v~l~~l~~~~   96 (164)
                      ++.+++.++....
T Consensus        81 ~~~i~l~~l~~~~   93 (125)
T cd04021          81 EASLDLSDILKNH   93 (125)
T ss_pred             EEEEEHHHhHhhc
Confidence            9999999988753

E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e

>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins

Probab=99.82  E-value=1.8e-19  Score=119.59  Aligned_cols=89  Identities=30%  Similarity=0.491  Sum_probs=79.7

Q ss_pred             EEEEEEEeEcCCCCC-CCCCCcEEEEEECCE--EeeeeeeCCCCCeEecEEEEEEeCC-CCcEEEEEEeCCCCCCCceeE
Q 031204            8 LRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQ--LKTRVVKNNVNPEWNEDLTLSISDS-NLPIKLTVYDKDTFSLDDKMG   83 (164)
Q Consensus         8 L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~~--~~T~~~~~t~~P~w~e~~~f~~~~~-~~~l~i~v~d~~~~~~~~~lG   83 (164)
                      |+|+|++|++|+..+ .+.+||||++.+.+.  ++|+++.++.+|.|||+|.|.+... .+.+.|+|||++..+++++||
T Consensus         1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~iG   80 (115)
T cd04040           1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDLLG   80 (115)
T ss_pred             CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCceE
Confidence            579999999999888 778999999999765  8999999999999999999999754 567999999999988999999


Q ss_pred             EEEEechhhhhhh
Q 031204           84 DAEFYITPFLEAL   96 (164)
Q Consensus        84 ~~~v~l~~l~~~~   96 (164)
                      ++.+++.++..+.
T Consensus        81 ~~~~~l~~l~~~~   93 (115)
T cd04040          81 SAYIDLSDLEPEE   93 (115)
T ss_pred             EEEEEHHHcCCCC
Confidence            9999999987643

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17

Probab=99.82  E-value=1.6e-19  Score=121.11  Aligned_cols=95  Identities=25%  Similarity=0.392  Sum_probs=82.5

Q ss_pred             cccEEEEEEEEEeEcCCCCC--CCCCCcEEEEEECC---E-EeeeeeeCCCCCeEecEEEEEEeCC---CCcEEEEEEeC
Q 031204            3 NLMGLLRVHVLRGVNLAVRD--VVSSDPYVVIKMGK---Q-LKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTVYDK   73 (164)
Q Consensus         3 ~~~g~L~v~v~~a~~L~~~~--~~~~dpyv~v~~~~---~-~~T~~~~~t~~P~w~e~~~f~~~~~---~~~l~i~v~d~   73 (164)
                      ...+.|.|+|++|++|+..+  .+.+||||++++.+   . .+|++++++.||.|||+|.|.+...   ...|.|+|||+
T Consensus        11 ~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~   90 (123)
T cd08390          11 LEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYDV   90 (123)
T ss_pred             CCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEEEC
Confidence            45688999999999999886  67899999999853   3 8999999999999999999998643   35699999999


Q ss_pred             CCCCCCceeEEEEEechhhhhhhc
Q 031204           74 DTFSLDDKMGDAEFYITPFLEALK   97 (164)
Q Consensus        74 ~~~~~~~~lG~~~v~l~~l~~~~~   97 (164)
                      +..+++++||++.++++++.....
T Consensus        91 ~~~~~~~~iG~~~i~L~~l~~~~~  114 (123)
T cd08390          91 DRFSRHCIIGHVLFPLKDLDLVKG  114 (123)
T ss_pred             CcCCCCcEEEEEEEeccceecCCC
Confidence            998889999999999998877543

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat

>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.82  E-value=1.1e-19  Score=121.98  Aligned_cols=93  Identities=33%  Similarity=0.453  Sum_probs=80.9

Q ss_pred             cccEEEEEEEEEeEcCCCCC--CCCCCcEEEEEECC-----E-EeeeeeeCCCCCeEecEEEEEEeCC---CCcEEEEEE
Q 031204            3 NLMGLLRVHVLRGVNLAVRD--VVSSDPYVVIKMGK-----Q-LKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTVY   71 (164)
Q Consensus         3 ~~~g~L~v~v~~a~~L~~~~--~~~~dpyv~v~~~~-----~-~~T~~~~~t~~P~w~e~~~f~~~~~---~~~l~i~v~   71 (164)
                      ...+.|.|+|++|+||+..+  .+.+||||++++.+     . ++|++++++.+|.|||+|.|.+...   ...|.|+||
T Consensus        11 ~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~   90 (123)
T cd08521          11 YKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVW   90 (123)
T ss_pred             CCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEEE
Confidence            45689999999999999877  56899999999842     3 8999999999999999999998642   456999999


Q ss_pred             eCCCCCCCceeEEEEEechhhhhh
Q 031204           72 DKDTFSLDDKMGDAEFYITPFLEA   95 (164)
Q Consensus        72 d~~~~~~~~~lG~~~v~l~~l~~~   95 (164)
                      |++.++++++||++.++++++..+
T Consensus        91 d~~~~~~~~~iG~~~i~l~~l~~~  114 (123)
T cd08521          91 HHDRFGRNTFLGEVEIPLDSWDLD  114 (123)
T ss_pred             eCCCCcCCceeeEEEEeccccccc
Confidence            999998999999999999988543

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into

>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7

Probab=99.82  E-value=1.9e-19  Score=121.10  Aligned_cols=93  Identities=30%  Similarity=0.470  Sum_probs=80.6

Q ss_pred             ccEEEEEEEEEeEcCCCCC-CCCCCcEEEEEEC---CE-EeeeeeeCCCCCeEecEEEEEEeC----CCCcEEEEEEeCC
Q 031204            4 LMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMG---KQ-LKTRVVKNNVNPEWNEDLTLSISD----SNLPIKLTVYDKD   74 (164)
Q Consensus         4 ~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~---~~-~~T~~~~~t~~P~w~e~~~f~~~~----~~~~l~i~v~d~~   74 (164)
                      ..+.|.|+|++|++|+..+ .+.+||||++.+.   .. .+|++++++.||.|||+|.|.+..    ....|.++|||++
T Consensus        14 ~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d   93 (125)
T cd08386          14 QESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYD   93 (125)
T ss_pred             CCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeCC
Confidence            4678999999999999888 7889999999994   23 999999999999999999998532    2346999999999


Q ss_pred             CCCCCceeEEEEEechhhhhhh
Q 031204           75 TFSLDDKMGDAEFYITPFLEAL   96 (164)
Q Consensus        75 ~~~~~~~lG~~~v~l~~l~~~~   96 (164)
                      ..+++++||++.+++.++....
T Consensus        94 ~~~~~~~iG~~~i~l~~l~~~~  115 (125)
T cd08386          94 RFSRNDPIGEVSLPLNKVDLTE  115 (125)
T ss_pred             CCcCCcEeeEEEEecccccCCC
Confidence            9989999999999999887543

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs)

Probab=99.82  E-value=4.1e-19  Score=118.06  Aligned_cols=79  Identities=23%  Similarity=0.437  Sum_probs=66.7

Q ss_pred             EEEEEEEeEcCCCCCCCCCCcEEEEEECCE--EeeeeeeCCCCCeEecEEEEEEeCC---CCcEEEEEEeCCCCCCCcee
Q 031204            8 LRVHVLRGVNLAVRDVVSSDPYVVIKMGKQ--LKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTVYDKDTFSLDDKM   82 (164)
Q Consensus         8 L~v~v~~a~~L~~~~~~~~dpyv~v~~~~~--~~T~~~~~t~~P~w~e~~~f~~~~~---~~~l~i~v~d~~~~~~~~~l   82 (164)
                      |.|+|++|++|+..  +.+||||.+++++.  ++|++..+ .+|.|||+|.|.+...   ...|.+.+||.+....+..+
T Consensus         2 L~v~vi~a~~l~~~--~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~~~   78 (117)
T cd08383           2 LRLRILEAKNLPSK--GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRDIVI   78 (117)
T ss_pred             eEEEEEEecCCCcC--CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCeeEE
Confidence            78999999999976  78999999999986  89999999 9999999999999753   34588899998877666777


Q ss_pred             EEEEEec
Q 031204           83 GDAEFYI   89 (164)
Q Consensus        83 G~~~v~l   89 (164)
                      |.+.+..
T Consensus        79 g~v~l~~   85 (117)
T cd08383          79 GKVALSK   85 (117)
T ss_pred             EEEEecC
Confidence            7765544

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2

>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.82  E-value=2.7e-19  Score=124.04  Aligned_cols=88  Identities=28%  Similarity=0.471  Sum_probs=78.6

Q ss_pred             CcccEEEEEEEEEeEcCCCCC-CCCCCcEEEEEECC-----------------------------E-EeeeeeeCCCCCe
Q 031204            2 ENLMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGK-----------------------------Q-LKTRVVKNNVNPE   50 (164)
Q Consensus         2 ~~~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~-----------------------------~-~~T~~~~~t~~P~   50 (164)
                      +.+.+.|.|+|++|++|++.+ .|.+||||++.+.+                             . ++|+++.++.||.
T Consensus        24 ~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~  103 (153)
T cd08676          24 EPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPV  103 (153)
T ss_pred             CCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCc
Confidence            357899999999999999998 88999999999852                             2 6899999999999


Q ss_pred             EecEEEEEEeCC-CCcEEEEEEeCCCCCCCceeEEEEEechhhh
Q 031204           51 WNEDLTLSISDS-NLPIKLTVYDKDTFSLDDKMGDAEFYITPFL   93 (164)
Q Consensus        51 w~e~~~f~~~~~-~~~l~i~v~d~~~~~~~~~lG~~~v~l~~l~   93 (164)
                      |||+|.|.+... ...|.|+|||++    +++||++.++++++.
T Consensus       104 WnE~F~f~v~~~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~  143 (153)
T cd08676         104 WNETFRFEVEDVSNDQLHLDIWDHD----DDFLGCVNIPLKDLP  143 (153)
T ss_pred             cccEEEEEeccCCCCEEEEEEEecC----CCeEEEEEEEHHHhC
Confidence            999999999754 467999999997    889999999999887

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy

>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16

Probab=99.81  E-value=2.9e-19  Score=120.23  Aligned_cols=91  Identities=22%  Similarity=0.336  Sum_probs=78.4

Q ss_pred             ccEEEEEEEEEeEcCCCCC-CCCCCcEEEEEECC---E-EeeeeeeCCCCCeEecEEEEE-EeC---CCCcEEEEEEeCC
Q 031204            4 LMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGK---Q-LKTRVVKNNVNPEWNEDLTLS-ISD---SNLPIKLTVYDKD   74 (164)
Q Consensus         4 ~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~---~-~~T~~~~~t~~P~w~e~~~f~-~~~---~~~~l~i~v~d~~   74 (164)
                      ..+.|.|+|++|+||++.+ .+..||||++.+.+   + .+|++.++ .||+|||+|.|. +..   .+..|.|+|||++
T Consensus        14 ~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~   92 (124)
T cd08389          14 SARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYGVE   92 (124)
T ss_pred             CCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEEECC
Confidence            4578999999999999988 77889999988753   2 89999887 999999999998 543   2456999999999


Q ss_pred             CCCCCceeEEEEEechhhhhh
Q 031204           75 TFSLDDKMGDAEFYITPFLEA   95 (164)
Q Consensus        75 ~~~~~~~lG~~~v~l~~l~~~   95 (164)
                      .++++++||++.++|+++..+
T Consensus        93 ~~~~~~~lG~~~i~L~~l~~~  113 (124)
T cd08389          93 RMRKERLIGEKVVPLSQLNLE  113 (124)
T ss_pred             CcccCceEEEEEEeccccCCC
Confidence            998999999999999988554

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.81  E-value=2.5e-19  Score=121.92  Aligned_cols=92  Identities=27%  Similarity=0.321  Sum_probs=81.3

Q ss_pred             ccEEEEEEEEEeEcCCCCC-CCCCCcEEEEEEC-------CE-EeeeeeeCCCCCeEecEEEEEEeCC-----CCcEEEE
Q 031204            4 LMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMG-------KQ-LKTRVVKNNVNPEWNEDLTLSISDS-----NLPIKLT   69 (164)
Q Consensus         4 ~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~-------~~-~~T~~~~~t~~P~w~e~~~f~~~~~-----~~~l~i~   69 (164)
                      ..+.|+|+|++|++|+..+ .+.+||||++++.       .. ++|++++++.||.|||+|.|.+...     ...|.|+
T Consensus        14 ~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~   93 (133)
T cd04009          14 SEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFT   93 (133)
T ss_pred             CCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEE
Confidence            4578999999999999888 7899999999986       23 9999999999999999999998642     3569999


Q ss_pred             EEeCCCCCCCceeEEEEEechhhhhh
Q 031204           70 VYDKDTFSLDDKMGDAEFYITPFLEA   95 (164)
Q Consensus        70 v~d~~~~~~~~~lG~~~v~l~~l~~~   95 (164)
                      |||++.++++++||++.++++++..-
T Consensus        94 V~d~d~~~~d~~iG~~~i~l~~l~~~  119 (133)
T cd04009          94 VKDYDLLGSNDFEGEAFLPLNDIPGV  119 (133)
T ss_pred             EEecCCCCCCcEeEEEEEeHHHCCcc
Confidence            99999998899999999999998753

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.81  E-value=1.1e-19  Score=162.40  Aligned_cols=118  Identities=22%  Similarity=0.432  Sum_probs=104.0

Q ss_pred             CCcccEEEEEEEEEeEcCCCCCCCCCCcEEEEEECCE--EeeeeeeCCCCCeEecEEEEEEeCCC--CcEEEEEEeCCCC
Q 031204            1 MENLMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQ--LKTRVVKNNVNPEWNEDLTLSISDSN--LPIKLTVYDKDTF   76 (164)
Q Consensus         1 ~~~~~g~L~v~v~~a~~L~~~~~~~~dpyv~v~~~~~--~~T~~~~~t~~P~w~e~~~f~~~~~~--~~l~i~v~d~~~~   76 (164)
                      |+...|.|.|+|++|.||. .+++.+||||++.++++  .||++++++.||.|||+|+|.+.+|.  ..|+|+|||++.+
T Consensus      1975 ~~~~~G~L~V~V~~a~nl~-~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~f 2053 (2102)
T PLN03200       1975 LQCLPGSLTVTIKRGNNLK-QSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNTF 2053 (2102)
T ss_pred             HhhCCcceEEEEeeccccc-cccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCcc
Confidence            6788999999999999998 44889999999999966  88999999999999999999887754  6799999999999


Q ss_pred             CCCceeEEEEEechhhhhhhcccccCCCCceEEEEeccCCCccccccceeEeeCCeEEEEEeEEecc--cceee---EEE
Q 031204           77 SLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRN--VEVGE---VKI  151 (164)
Q Consensus        77 ~~~~~lG~~~v~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~--~~~G~---l~l  151 (164)
                       .++.+|.+.+++.++..++..                                     +.||.|.+  ...|+   |++
T Consensus      2054 -~kd~~G~~~i~l~~vv~~~~~-------------------------------------~~~~~L~~~~~k~G~~~~~~~ 2095 (2102)
T PLN03200       2054 -GKSSLGKVTIQIDRVVMEGTY-------------------------------------SGEYSLNPESNKDGSSRTLEI 2095 (2102)
T ss_pred             -CCCCCceEEEEHHHHhcCcee-------------------------------------eeeeecCcccccCCCcceEEE
Confidence             556999999999999876543                                     88898886  56898   999


Q ss_pred             EEEEEe
Q 031204          152 QLEWID  157 (164)
Q Consensus       152 ~l~~~~  157 (164)
                      +++|-+
T Consensus      2096 e~~w~~ 2101 (2102)
T PLN03200       2096 EFQWSN 2101 (2102)
T ss_pred             EEEecC
Confidence            999953

>PLN03008 Phospholipase D delta

Probab=99.81  E-value=5.3e-19  Score=147.08  Aligned_cols=120  Identities=23%  Similarity=0.429  Sum_probs=101.7

Q ss_pred             cEEEEEEEEEeEcCCCCC-------------------------------------------CCCCCcEEEEEECCE--Ee
Q 031204            5 MGLLRVHVLRGVNLAVRD-------------------------------------------VVSSDPYVVIKMGKQ--LK   39 (164)
Q Consensus         5 ~g~L~v~v~~a~~L~~~~-------------------------------------------~~~~dpyv~v~~~~~--~~   39 (164)
                      -|.|.++|.+|++|++++                                           .+++||||++.++++  .+
T Consensus        13 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~~rv~R   92 (868)
T PLN03008         13 HGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQATLAR   92 (868)
T ss_pred             ecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECCcceee
Confidence            488999999999998521                                           135699999999876  89


Q ss_pred             eeeeeCCCCCeEecEEEEEEeCCCCcEEEEEEeCCCCCCCceeEEEEEechhhhhhhcccccCCCCceEEEEeccCCCcc
Q 031204           40 TRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENC  119 (164)
Q Consensus        40 T~~~~~t~~P~w~e~~~f~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~  119 (164)
                      |+++.++.||+|||+|.|.+.++...|.|+|||++.++ +++||++.+++.++..+...                     
T Consensus        93 TrVi~n~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~g-aD~IG~a~IPL~~L~~Ge~v---------------------  150 (868)
T PLN03008         93 TRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVFG-AQIIGTAKIPVRDIASGERI---------------------  150 (868)
T ss_pred             EEeCCCCCCCCcceeEEEEecCCCceEEEEEEcCCccC-CceeEEEEEEHHHcCCCCce---------------------
Confidence            99999999999999999999888788999999999995 68999999999998775432                     


Q ss_pred             ccccceeEeeCCeEEEEEeEEeccc------ceeeEEEEEEEEecCCCC
Q 031204          120 LAEESHIVWTDGKLVQNLFLRLRNV------EVGEVKIQLEWIDIPGSR  162 (164)
Q Consensus       120 ~~~~~~~~~~~g~~~~~~~~~l~~~------~~G~l~l~l~~~~~~~~~  162 (164)
                                      +.|++|.+.      ..++|+|+|+|.|+....
T Consensus       151 ----------------d~Wl~Ll~~~~kp~k~~~kl~v~lqf~pv~~~~  183 (868)
T PLN03008        151 ----------------SGWFPVLGASGKPPKAETAIFIDMKFTPFDQIH  183 (868)
T ss_pred             ----------------EEEEEccccCCCCCCCCcEEEEEEEEEEccccc
Confidence                            778877543      347999999999998753

>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1)

Probab=99.81  E-value=1.6e-18  Score=120.15  Aligned_cols=89  Identities=27%  Similarity=0.433  Sum_probs=72.5

Q ss_pred             EEEEEEEeEc--CCCCC-CCCCCcEEEEEEC-----CE-EeeeeeeCCCCCeEecEEEEEEeCC---------CCcEEEE
Q 031204            8 LRVHVLRGVN--LAVRD-VVSSDPYVVIKMG-----KQ-LKTRVVKNNVNPEWNEDLTLSISDS---------NLPIKLT   69 (164)
Q Consensus         8 L~v~v~~a~~--L~~~~-~~~~dpyv~v~~~-----~~-~~T~~~~~t~~P~w~e~~~f~~~~~---------~~~l~i~   69 (164)
                      ..++|..|++  |+... .+..||||++++.     .+ .+|+++++|.||+|||+|.|.+...         ...|.|+
T Consensus         4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~   83 (155)
T cd08690           4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE   83 (155)
T ss_pred             eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence            3456666666  66665 6789999999972     23 9999999999999999999999644         3469999


Q ss_pred             EEeCCCC-CCCceeEEEEEechhhhhhh
Q 031204           70 VYDKDTF-SLDDKMGDAEFYITPFLEAL   96 (164)
Q Consensus        70 v~d~~~~-~~~~~lG~~~v~l~~l~~~~   96 (164)
                      |||.+.+ .+|++||++.++|+.+....
T Consensus        84 V~d~~~f~~~D~~iG~~~i~L~~l~~~~  111 (155)
T cd08690          84 VYHKGGFLRSDKLLGTAQVKLEPLETKC  111 (155)
T ss_pred             EEeCCCcccCCCeeEEEEEEcccccccC
Confidence            9999986 47999999999999986654

Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha

>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin

Probab=99.81  E-value=6.1e-19  Score=118.64  Aligned_cols=88  Identities=32%  Similarity=0.474  Sum_probs=79.1

Q ss_pred             EEEEEEEEeEcCCCCC-CCCCCcEEEEEECCE---EeeeeeeCCCCCeEecEEEEEEeCC-CCcEEEEEEeCCCCCCCce
Q 031204            7 LLRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQ---LKTRVVKNNVNPEWNEDLTLSISDS-NLPIKLTVYDKDTFSLDDK   81 (164)
Q Consensus         7 ~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~~---~~T~~~~~t~~P~w~e~~~f~~~~~-~~~l~i~v~d~~~~~~~~~   81 (164)
                      .|+|.|++|++|+..+ .+.+||||++.+++.   .+|++++++.||.|||+|.|.+..+ ...|.|+|||++.++.+++
T Consensus         1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd~   80 (124)
T cd04037           1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDDL   80 (124)
T ss_pred             CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCce
Confidence            4789999999999988 789999999999876   6888899999999999999998654 4569999999999989999


Q ss_pred             eEEEEEechhhhh
Q 031204           82 MGDAEFYITPFLE   94 (164)
Q Consensus        82 lG~~~v~l~~l~~   94 (164)
                      ||++.+++++...
T Consensus        81 iG~~~i~l~~~~~   93 (124)
T cd04037          81 IGETVIDLEDRFF   93 (124)
T ss_pred             eEEEEEeeccccc
Confidence            9999999998764

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma

Probab=99.81  E-value=4.4e-19  Score=120.35  Aligned_cols=90  Identities=31%  Similarity=0.487  Sum_probs=80.2

Q ss_pred             cEEEEEEEEEeEcCCCCC-CCCCCcEEEEEECC-----E-EeeeeeeCCCCCeEecEEEEEEeCC--CCcEEEEEEeCCC
Q 031204            5 MGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGK-----Q-LKTRVVKNNVNPEWNEDLTLSISDS--NLPIKLTVYDKDT   75 (164)
Q Consensus         5 ~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~-----~-~~T~~~~~t~~P~w~e~~~f~~~~~--~~~l~i~v~d~~~   75 (164)
                      .+.|+|+|++|++|+..+ .+.+||||.+.+.+     . ++|+++.++.+|.|||+|.|.+...  ...|.|+|||++.
T Consensus        12 ~~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~   91 (131)
T cd04026          12 DNKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDR   91 (131)
T ss_pred             CCEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCC
Confidence            378999999999999887 77899999999963     3 9999999999999999999998754  3569999999998


Q ss_pred             CCCCceeEEEEEechhhhh
Q 031204           76 FSLDDKMGDAEFYITPFLE   94 (164)
Q Consensus        76 ~~~~~~lG~~~v~l~~l~~   94 (164)
                      .+.+++||++.++++++..
T Consensus        92 ~~~~~~iG~~~~~l~~l~~  110 (131)
T cd04026          92 TTRNDFMGSLSFGVSELIK  110 (131)
T ss_pred             CCCcceeEEEEEeHHHhCc
Confidence            8899999999999998865

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd

>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain

Probab=99.80  E-value=6.5e-19  Score=119.82  Aligned_cols=89  Identities=35%  Similarity=0.463  Sum_probs=79.1

Q ss_pred             cccEEEEEEEEEeEcCCCCC-CCCCCcEEEEEECC-----E-EeeeeeeCCCCCeEecEEEEEEeCC---CCcEEEEEEe
Q 031204            3 NLMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGK-----Q-LKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTVYD   72 (164)
Q Consensus         3 ~~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~-----~-~~T~~~~~t~~P~w~e~~~f~~~~~---~~~l~i~v~d   72 (164)
                      ...|.|.|+|++|++|++.+ .+.+||||++.+.+     . ++|++++++.||.|||+|.|.+...   ...|.|+|||
T Consensus        10 ~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V~d   89 (133)
T cd08384          10 TQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITVWD   89 (133)
T ss_pred             CCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEEEe
Confidence            35689999999999999988 78999999999853     2 8999999999999999999998643   3569999999


Q ss_pred             CCCCCCCceeEEEEEechh
Q 031204           73 KDTFSLDDKMGDAEFYITP   91 (164)
Q Consensus        73 ~~~~~~~~~lG~~~v~l~~   91 (164)
                      ++..+++++||++.+++..
T Consensus        90 ~d~~~~~~~lG~~~i~l~~  108 (133)
T cd08384          90 KDIGKSNDYIGGLQLGINA  108 (133)
T ss_pred             CCCCCCccEEEEEEEecCC
Confidence            9998899999999999975

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai

>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs)

Probab=99.80  E-value=7.4e-19  Score=120.16  Aligned_cols=88  Identities=22%  Similarity=0.416  Sum_probs=77.9

Q ss_pred             EEEEEEEeEcCCCCCCCCCCcEEEEEEC----CE-EeeeeeeCCCCCeEecEEEEEEeCC----------------CCcE
Q 031204            8 LRVHVLRGVNLAVRDVVSSDPYVVIKMG----KQ-LKTRVVKNNVNPEWNEDLTLSISDS----------------NLPI   66 (164)
Q Consensus         8 L~v~v~~a~~L~~~~~~~~dpyv~v~~~----~~-~~T~~~~~t~~P~w~e~~~f~~~~~----------------~~~l   66 (164)
                      |+|+|++|++|+....+.+|||+++++.    .. ++|+++.++.+|.|+|+|.|.+...                ...|
T Consensus         1 L~V~Vi~A~~L~~~~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~l   80 (137)
T cd08675           1 LSVRVLECRDLALKSNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSEL   80 (137)
T ss_pred             CEEEEEEccCCCcccCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccEE
Confidence            5799999999987756789999999998    45 9999999999999999999998653                3469


Q ss_pred             EEEEEeCCCCCCCceeEEEEEechhhhhh
Q 031204           67 KLTVYDKDTFSLDDKMGDAEFYITPFLEA   95 (164)
Q Consensus        67 ~i~v~d~~~~~~~~~lG~~~v~l~~l~~~   95 (164)
                      .|+|||.+..+++++||++.+++.++...
T Consensus        81 ~i~V~d~~~~~~~~~IG~~~i~l~~l~~~  109 (137)
T cd08675          81 RVELWHASMVSGDDFLGEVRIPLQGLQQA  109 (137)
T ss_pred             EEEEEcCCcCcCCcEEEEEEEehhhccCC
Confidence            99999999988999999999999988743

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin

>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1)

Probab=99.80  E-value=4.6e-18  Score=115.95  Aligned_cols=88  Identities=26%  Similarity=0.390  Sum_probs=75.6

Q ss_pred             EEEEEEEEeEcCCCCC-CCCCCcEEEEEECC-------------E-EeeeeeeCCCCCeE-ecEEEEEEeCCCCcEEEEE
Q 031204            7 LLRVHVLRGVNLAVRD-VVSSDPYVVIKMGK-------------Q-LKTRVVKNNVNPEW-NEDLTLSISDSNLPIKLTV   70 (164)
Q Consensus         7 ~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~-------------~-~~T~~~~~t~~P~w-~e~~~f~~~~~~~~l~i~v   70 (164)
                      .++|++++|++|+ ++ +|++|||+++.+.+             + ++|+++.++.||.| ||+|.|.+. ..+.|.|+|
T Consensus         2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~-~~~~L~v~V   79 (137)
T cd08691           2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGL-PTDVLEIEV   79 (137)
T ss_pred             EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcC-CCCEEEEEE
Confidence            4689999999998 66 89999999999852             4 89999999999999 999999985 456799999


Q ss_pred             EeCCCCCC---CceeEEEEEechhhhhhh
Q 031204           71 YDKDTFSL---DDKMGDAEFYITPFLEAL   96 (164)
Q Consensus        71 ~d~~~~~~---~~~lG~~~v~l~~l~~~~   96 (164)
                      ||++..++   +++||++.+++.++....
T Consensus        80 ~D~~~~~~~~~~d~lG~~~i~l~~l~~~~  108 (137)
T cd08691          80 KDKFAKSRPIIRRFLGKLSIPVQRLLERH  108 (137)
T ss_pred             EecCCCCCccCCceEEEEEEEHHHhcccc
Confidence            99765433   799999999999997654

NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C

>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12

Probab=99.79  E-value=7.7e-19  Score=119.77  Aligned_cols=88  Identities=23%  Similarity=0.352  Sum_probs=77.2

Q ss_pred             ccEEEEEEEEEeEcCCCCC-CCCCCcEEEEEECCE------EeeeeeeCCCCCeEecEEEEEEeC---CCCcEEEEEEeC
Q 031204            4 LMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQ------LKTRVVKNNVNPEWNEDLTLSISD---SNLPIKLTVYDK   73 (164)
Q Consensus         4 ~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~~------~~T~~~~~t~~P~w~e~~~f~~~~---~~~~l~i~v~d~   73 (164)
                      ..+.|.|+|++|+||+..+ .+.+||||++++.+.      .+|++++++.||+|||+|.|.+..   .+..|.|+|||+
T Consensus        13 ~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~~   92 (136)
T cd08406          13 TAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTVAES   92 (136)
T ss_pred             CCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEEEeC
Confidence            4578999999999999988 789999999998531      689999999999999999999864   245699999999


Q ss_pred             CCCCCCceeEEEEEechh
Q 031204           74 DTFSLDDKMGDAEFYITP   91 (164)
Q Consensus        74 ~~~~~~~~lG~~~v~l~~   91 (164)
                      +.++++++||++.+....
T Consensus        93 d~~~~~~~iG~v~lg~~~  110 (136)
T cd08406          93 TEDGKTPNVGHVIIGPAA  110 (136)
T ss_pred             CCCCCCCeeEEEEECCCC
Confidence            999999999999997654

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl

>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16

Probab=99.79  E-value=8.6e-19  Score=119.91  Aligned_cols=91  Identities=22%  Similarity=0.370  Sum_probs=79.5

Q ss_pred             cccEEEEEEEEEeEcCCCCC-CCCCCcEEEEEECC------E-EeeeeeeCCCCCeEecEEEEEEeC---CCCcEEEEEE
Q 031204            3 NLMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGK------Q-LKTRVVKNNVNPEWNEDLTLSISD---SNLPIKLTVY   71 (164)
Q Consensus         3 ~~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~------~-~~T~~~~~t~~P~w~e~~~f~~~~---~~~~l~i~v~   71 (164)
                      ...++|.|+|++|+||++.+ .+.+||||++.+.+      . .+|++.+++.||+|||+|.|.+..   .+..|.|+||
T Consensus        12 ~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~V~   91 (138)
T cd08408          12 ALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMFSVY   91 (138)
T ss_pred             CCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEEEEE
Confidence            35689999999999999988 77899999999853      1 689999999999999999999963   2457999999


Q ss_pred             eCCCCCCCceeEEEEEechhhh
Q 031204           72 DKDTFSLDDKMGDAEFYITPFL   93 (164)
Q Consensus        72 d~~~~~~~~~lG~~~v~l~~l~   93 (164)
                      |.+.++++++||++.+++....
T Consensus        92 ~~~~~~~~~~iG~v~l~~~~~~  113 (138)
T cd08408          92 NKRKMKRKEMIGWFSLGLNSSG  113 (138)
T ss_pred             ECCCCCCCcEEEEEEECCcCCC
Confidence            9999999999999999987554

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13

Probab=99.79  E-value=8.3e-19  Score=119.72  Aligned_cols=88  Identities=22%  Similarity=0.362  Sum_probs=77.5

Q ss_pred             ccEEEEEEEEEeEcCCCCC---CCCCCcEEEEEECCE------EeeeeeeCCCCCeEecEEEEEEeCC---CCcEEEEEE
Q 031204            4 LMGLLRVHVLRGVNLAVRD---VVSSDPYVVIKMGKQ------LKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTVY   71 (164)
Q Consensus         4 ~~g~L~v~v~~a~~L~~~~---~~~~dpyv~v~~~~~------~~T~~~~~t~~P~w~e~~~f~~~~~---~~~l~i~v~   71 (164)
                      ..++|.|+|++|+||++.+   .+.+||||++++...      .+|++.+++.||+|||.|.|.+...   +..|.|+||
T Consensus        13 ~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~V~   92 (138)
T cd08407          13 AANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVELEVL   92 (138)
T ss_pred             CCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEEEEE
Confidence            4588999999999999987   355899999998753      6899999999999999999998642   456999999


Q ss_pred             eCCCCCCCceeEEEEEechh
Q 031204           72 DKDTFSLDDKMGDAEFYITP   91 (164)
Q Consensus        72 d~~~~~~~~~lG~~~v~l~~   91 (164)
                      |++.++++++||++.+++..
T Consensus        93 d~d~~~~~d~iG~v~lg~~~  112 (138)
T cd08407          93 NQDSPGQSLPLGRCSLGLHT  112 (138)
T ss_pred             eCCCCcCcceeceEEecCcC
Confidence            99999999999999999865

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy

>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4

Probab=99.79  E-value=7.9e-19  Score=119.89  Aligned_cols=88  Identities=26%  Similarity=0.391  Sum_probs=77.8

Q ss_pred             ccEEEEEEEEEeEcCCCCC-CCCCCcEEEEEECC--E----EeeeeeeCCCCCeEecEEEEEEeC---CCCcEEEEEEeC
Q 031204            4 LMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGK--Q----LKTRVVKNNVNPEWNEDLTLSISD---SNLPIKLTVYDK   73 (164)
Q Consensus         4 ~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~--~----~~T~~~~~t~~P~w~e~~~f~~~~---~~~~l~i~v~d~   73 (164)
                      ..+.|.|+|++|++|+..+ .+.+||||++.+.+  .    .+|++++++.||.|+|+|.|.+..   ....|.|+|||+
T Consensus        13 ~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d~   92 (136)
T cd08404          13 TTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLDS   92 (136)
T ss_pred             CCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEEEC
Confidence            3578999999999999988 88999999999853  2    789999999999999999999863   235689999999


Q ss_pred             CCCCCCceeEEEEEechh
Q 031204           74 DTFSLDDKMGDAEFYITP   91 (164)
Q Consensus        74 ~~~~~~~~lG~~~v~l~~   91 (164)
                      +.++++++||++.+++..
T Consensus        93 d~~~~~~~iG~~~~~~~~  110 (136)
T cd08404          93 DRVTKNEVIGRLVLGPKA  110 (136)
T ss_pred             CCCCCCccEEEEEECCcC
Confidence            999999999999999988

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.79  E-value=5.5e-20  Score=142.57  Aligned_cols=90  Identities=34%  Similarity=0.512  Sum_probs=82.2

Q ss_pred             EEEEEEEEEeEcCCCCC-CCCCCcEEEEEECC----E--EeeeeeeCCCCCeEecEEEEEEeCC--CCcEEEEEEeCCCC
Q 031204            6 GLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGK----Q--LKTRVVKNNVNPEWNEDLTLSISDS--NLPIKLTVYDKDTF   76 (164)
Q Consensus         6 g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~----~--~~T~~~~~t~~P~w~e~~~f~~~~~--~~~l~i~v~d~~~~   76 (164)
                      ..|+|+|.+|+||.+++ +|-+|||+++.+-+    +  ++|++++.++||+|||+|+|.+...  ++.|.|+||||++.
T Consensus       180 ~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDrT  259 (683)
T KOG0696|consen  180 DVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWDRT  259 (683)
T ss_pred             ceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEeccccc
Confidence            46889999999999999 99999999999863    2  9999999999999999999999754  46799999999999


Q ss_pred             CCCceeEEEEEechhhhhh
Q 031204           77 SLDDKMGDAEFYITPFLEA   95 (164)
Q Consensus        77 ~~~~~lG~~~v~l~~l~~~   95 (164)
                      +++||+|...+.++++...
T Consensus       260 sRNDFMGslSFgisEl~K~  278 (683)
T KOG0696|consen  260 SRNDFMGSLSFGISELQKA  278 (683)
T ss_pred             ccccccceecccHHHHhhc
Confidence            9999999999999998875

>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=99.79  E-value=1.5e-18  Score=117.35  Aligned_cols=89  Identities=16%  Similarity=0.312  Sum_probs=76.0

Q ss_pred             ccEEEEEEEEEeEcCCCCC-CCCCCcEEEEEECC---E---EeeeeeeCCC-CCeEecEEEEEEeCCC--CcEEEEEEeC
Q 031204            4 LMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGK---Q---LKTRVVKNNV-NPEWNEDLTLSISDSN--LPIKLTVYDK   73 (164)
Q Consensus         4 ~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~---~---~~T~~~~~t~-~P~w~e~~~f~~~~~~--~~l~i~v~d~   73 (164)
                      ..|+|+|+|++|+||++.. .+.+||||++++..   .   .+|++++++. +|.|||+|.|++....  ..|.++|||+
T Consensus        12 ~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~d~   91 (135)
T cd08692          12 VNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIKLYSR   91 (135)
T ss_pred             cCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEEEEEeC
Confidence            4688999999999999875 66779999998752   2   8999999985 6999999999997532  3588999999


Q ss_pred             CCCCCCceeEEEEEechhh
Q 031204           74 DTFSLDDKMGDAEFYITPF   92 (164)
Q Consensus        74 ~~~~~~~~lG~~~v~l~~l   92 (164)
                      +..+++++||++.+..+..
T Consensus        92 ~~~~~n~~IG~v~lG~~~~  110 (135)
T cd08692          92 SSVRRKHFLGQVWISSDSS  110 (135)
T ss_pred             CCCcCCceEEEEEECCccC
Confidence            9988999999999998764

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho

>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein

Probab=99.78  E-value=1.3e-17  Score=109.93  Aligned_cols=79  Identities=25%  Similarity=0.545  Sum_probs=68.5

Q ss_pred             EEEEEEEeEcCCCCCCCCCCcEEEEEECC-----E-EeeeeeeCCCCCeEecEEEEEEeCCCCcEEEEEEeC-------C
Q 031204            8 LRVHVLRGVNLAVRDVVSSDPYVVIKMGK-----Q-LKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDK-------D   74 (164)
Q Consensus         8 L~v~v~~a~~L~~~~~~~~dpyv~v~~~~-----~-~~T~~~~~t~~P~w~e~~~f~~~~~~~~l~i~v~d~-------~   74 (164)
                      |.|+|.+|+||+    +.+||||++.+.+     . ++|+++.++.||+|||+|.|++. ....|.+.|||+       +
T Consensus         1 L~V~V~~A~~L~----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~-~s~~L~~~v~d~~~~~~~~d   75 (118)
T cd08686           1 LNVIVHSAQGFK----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELE-GSQTLRILCYEKCYSKVKLD   75 (118)
T ss_pred             CEEEEEeCCCCC----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeC-CCCEEEEEEEEccccccccc
Confidence            689999999996    4689999998863     3 99999999999999999999996 466899999998       4


Q ss_pred             CCCCCceeEEEEEechh
Q 031204           75 TFSLDDKMGDAEFYITP   91 (164)
Q Consensus        75 ~~~~~~~lG~~~v~l~~   91 (164)
                      ..+.|+++|++.+.++.
T Consensus        76 ~~~~d~~~G~g~i~Ld~   92 (118)
T cd08686          76 GEGTDAIMGKGQIQLDP   92 (118)
T ss_pred             ccCcccEEEEEEEEECH
Confidence            56789999998888754

The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr

>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

Probab=99.78  E-value=2.5e-17  Score=111.10  Aligned_cols=88  Identities=31%  Similarity=0.510  Sum_probs=76.2

Q ss_pred             EEEEEEEEEeEcCCCCC---CCCCCcEEEEEEC------CE-EeeeeeeCCC-CCeEecEEEEEEeCCC-CcEEEEEEeC
Q 031204            6 GLLRVHVLRGVNLAVRD---VVSSDPYVVIKMG------KQ-LKTRVVKNNV-NPEWNEDLTLSISDSN-LPIKLTVYDK   73 (164)
Q Consensus         6 g~L~v~v~~a~~L~~~~---~~~~dpyv~v~~~------~~-~~T~~~~~t~-~P~w~e~~~f~~~~~~-~~l~i~v~d~   73 (164)
                      -.|+|+|++|++|+..+   .+..||||++++.      .. ++|+++.++. ||.|||+|.|.+..+. ..|.|+|||+
T Consensus         2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~   81 (128)
T cd00275           2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDE   81 (128)
T ss_pred             eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeC
Confidence            36899999999999876   5789999999984      34 8999988765 9999999999997655 4599999999


Q ss_pred             CCCCCCceeEEEEEechhhhh
Q 031204           74 DTFSLDDKMGDAEFYITPFLE   94 (164)
Q Consensus        74 ~~~~~~~~lG~~~v~l~~l~~   94 (164)
                      +.. ++++||++.++++++..
T Consensus        82 ~~~-~~~~iG~~~~~l~~l~~  101 (128)
T cd00275          82 DSG-DDDFLGQACLPLDSLRQ  101 (128)
T ss_pred             CCC-CCcEeEEEEEEhHHhcC
Confidence            988 99999999999998854

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking

>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1

Probab=99.77  E-value=2.9e-18  Score=117.06  Aligned_cols=89  Identities=29%  Similarity=0.402  Sum_probs=78.1

Q ss_pred             ccEEEEEEEEEeEcCCCCC-CCCCCcEEEEEECC-----E-EeeeeeeCCCCCeEecEEEEEEeCC---CCcEEEEEEeC
Q 031204            4 LMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGK-----Q-LKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTVYDK   73 (164)
Q Consensus         4 ~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~-----~-~~T~~~~~t~~P~w~e~~~f~~~~~---~~~l~i~v~d~   73 (164)
                      ..|.|.|+|++|++|+..+ .+.+||||++.+.+     . ++|++++++.||.|||+|.|.+...   ...|.|+|||+
T Consensus        13 ~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v~d~   92 (136)
T cd08402          13 TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTVLDY   92 (136)
T ss_pred             CCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEEEEeC
Confidence            5689999999999999988 78999999999852     2 7899999999999999999998633   24699999999


Q ss_pred             CCCCCCceeEEEEEechhh
Q 031204           74 DTFSLDDKMGDAEFYITPF   92 (164)
Q Consensus        74 ~~~~~~~~lG~~~v~l~~l   92 (164)
                      +.++++++||++.+++...
T Consensus        93 ~~~~~~~~iG~~~i~~~~~  111 (136)
T cd08402          93 DRIGKNDPIGKVVLGCNAT  111 (136)
T ss_pred             CCCCCCceeEEEEECCccC
Confidence            9998999999999999764

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:

>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17

Probab=99.77  E-value=3.2e-18  Score=116.80  Aligned_cols=88  Identities=26%  Similarity=0.446  Sum_probs=75.7

Q ss_pred             ccEEEEEEEEEeEcCCCCC-CCCCCcEEEEEECC-----E-EeeeeeeCCCCCeEecEEEEEEeCC---CCcEEEEEEeC
Q 031204            4 LMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGK-----Q-LKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTVYDK   73 (164)
Q Consensus         4 ~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~-----~-~~T~~~~~t~~P~w~e~~~f~~~~~---~~~l~i~v~d~   73 (164)
                      ..|.|.|+|++|++|+..+ .+.+||||++.+..     . ++|++++++.||.|||+|.|.+...   ...|.|+|||+
T Consensus        12 ~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d~   91 (135)
T cd08410          12 SAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTVYGH   91 (135)
T ss_pred             CCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEEEeC
Confidence            4589999999999999988 78999999999732     2 7999999999999999999998532   23599999999


Q ss_pred             CCCCCCceeEEEEEechh
Q 031204           74 DTFSLDDKMGDAEFYITP   91 (164)
Q Consensus        74 ~~~~~~~~lG~~~v~l~~   91 (164)
                      +..+++++||++.+....
T Consensus        92 d~~~~~~~iG~~~l~~~~  109 (135)
T cd08410          92 NVKSSNDFIGRIVIGQYS  109 (135)
T ss_pred             CCCCCCcEEEEEEEcCcc
Confidence            999999999999876543

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-

>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7

Probab=99.77  E-value=5.1e-18  Score=115.87  Aligned_cols=89  Identities=28%  Similarity=0.384  Sum_probs=78.1

Q ss_pred             ccEEEEEEEEEeEcCCCCC-CCCCCcEEEEEEC--C---E-EeeeeeeCCCCCeEecEEEEEEeC---CCCcEEEEEEeC
Q 031204            4 LMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMG--K---Q-LKTRVVKNNVNPEWNEDLTLSISD---SNLPIKLTVYDK   73 (164)
Q Consensus         4 ~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~--~---~-~~T~~~~~t~~P~w~e~~~f~~~~---~~~~l~i~v~d~   73 (164)
                      ..++|.|+|++|+||+..+ .+.+||||++.+.  +   . ++|++++++.||.|||+|.|.+..   ....|.|+|||+
T Consensus        13 ~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d~   92 (136)
T cd08405          13 TANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITVMDK   92 (136)
T ss_pred             CCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEEEEC
Confidence            4688999999999999888 7899999999983  2   2 789999999999999999999853   235699999999


Q ss_pred             CCCCCCceeEEEEEechhh
Q 031204           74 DTFSLDDKMGDAEFYITPF   92 (164)
Q Consensus        74 ~~~~~~~~lG~~~v~l~~l   92 (164)
                      +.++++++||++.+++.+.
T Consensus        93 ~~~~~~~~lG~~~i~~~~~  111 (136)
T cd08405          93 DRLSRNDLIGKIYLGWKSG  111 (136)
T ss_pred             CCCCCCcEeEEEEECCccC
Confidence            9998999999999999875

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

Probab=99.76  E-value=7.1e-18  Score=114.88  Aligned_cols=88  Identities=28%  Similarity=0.429  Sum_probs=76.8

Q ss_pred             ccEEEEEEEEEeEcCCCCC-CCCCCcEEEEEECC-----E-EeeeeeeCCCCCeEecEEEEEEeCC---CCcEEEEEEeC
Q 031204            4 LMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGK-----Q-LKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTVYDK   73 (164)
Q Consensus         4 ~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~-----~-~~T~~~~~t~~P~w~e~~~f~~~~~---~~~l~i~v~d~   73 (164)
                      ..|.|+|+|++|++|++.+ .+.+||||++++..     . ++|++++++.||.|||+|.|.+...   ...|.|+|||+
T Consensus        12 ~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~d~   91 (134)
T cd08403          12 TAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAVVDY   91 (134)
T ss_pred             CCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEEEEC
Confidence            4689999999999999988 88999999999842     1 7899999999999999999998532   23599999999


Q ss_pred             CCCCCCceeEEEEEechh
Q 031204           74 DTFSLDDKMGDAEFYITP   91 (164)
Q Consensus        74 ~~~~~~~~lG~~~v~l~~   91 (164)
                      +.++++++||++.+++..
T Consensus        92 ~~~~~~~~IG~~~l~~~~  109 (134)
T cd08403          92 DRVGHNELIGVCRVGPNA  109 (134)
T ss_pred             CCCCCCceeEEEEECCCC
Confidence            999899999999998763

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind

>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.76  E-value=1.4e-17  Score=132.41  Aligned_cols=93  Identities=32%  Similarity=0.474  Sum_probs=82.6

Q ss_pred             ccEEEEEEEEEeEcCCCCC-CCCCCcEEEEEECCE----EeeeeeeCCCCCeEecEEEEEEeC---CCCcEEEEEEeCCC
Q 031204            4 LMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQ----LKTRVVKNNVNPEWNEDLTLSISD---SNLPIKLTVYDKDT   75 (164)
Q Consensus         4 ~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~~----~~T~~~~~t~~P~w~e~~~f~~~~---~~~~l~i~v~d~~~   75 (164)
                      ....|.|+|++|++|+..+ .|.+||||++++.+.    .+|++.++++||.|||+|.|.+..   ..+.|.++|||.|+
T Consensus       165 ~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~dr  244 (421)
T KOG1028|consen  165 ELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYDFDR  244 (421)
T ss_pred             cCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEEecCC
Confidence            3567999999999999999 678999999999854    999999999999999999999753   35679999999999


Q ss_pred             CCCCceeEEEEEechhhhhhh
Q 031204           76 FSLDDKMGDAEFYITPFLEAL   96 (164)
Q Consensus        76 ~~~~~~lG~~~v~l~~l~~~~   96 (164)
                      ++++++||++.+++..+....
T Consensus       245 fsr~~~iGev~~~l~~~~~~~  265 (421)
T KOG1028|consen  245 FSRHDFIGEVILPLGEVDLLS  265 (421)
T ss_pred             cccccEEEEEEecCccccccc
Confidence            999999999999988776654

>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin

Probab=99.75  E-value=2.8e-18  Score=116.62  Aligned_cols=88  Identities=30%  Similarity=0.429  Sum_probs=78.6

Q ss_pred             ccEEEEEEEEEeEcCCCCC-CCCCCcEEEEEECC-----E-EeeeeeeCCCCCeEecEEEEEEeCC---CCcEEEEEEeC
Q 031204            4 LMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGK-----Q-LKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTVYDK   73 (164)
Q Consensus         4 ~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~-----~-~~T~~~~~t~~P~w~e~~~f~~~~~---~~~l~i~v~d~   73 (164)
                      ..++|.|+|++|++|+..+ .+.+||||++++.+     . ++|+++.++.+|.|||+|.|.+...   ...|.|+|||.
T Consensus        12 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d~   91 (134)
T cd00276          12 TAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVDK   91 (134)
T ss_pred             CCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEec
Confidence            3578999999999999888 78999999999864     1 7999999999999999999998654   35699999999


Q ss_pred             CCCCCCceeEEEEEechh
Q 031204           74 DTFSLDDKMGDAEFYITP   91 (164)
Q Consensus        74 ~~~~~~~~lG~~~v~l~~   91 (164)
                      +..+++++||.+.+++++
T Consensus        92 ~~~~~~~~lG~~~i~l~~  109 (134)
T cd00276          92 DSVGRNEVIGQVVLGPDS  109 (134)
T ss_pred             CCCCCCceeEEEEECCCC
Confidence            988899999999999988

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin

>cd04048 C2A_Copine C2 domain first repeat in Copine

Probab=99.74  E-value=4.1e-17  Score=109.12  Aligned_cols=87  Identities=29%  Similarity=0.444  Sum_probs=75.2

Q ss_pred             EEEEeEcCCCCC-CCCCCcEEEEEECC-------E-EeeeeeeCCCCCeEecEEEEEEeC-CCCcEEEEEEeCCC----C
Q 031204           11 HVLRGVNLAVRD-VVSSDPYVVIKMGK-------Q-LKTRVVKNNVNPEWNEDLTLSISD-SNLPIKLTVYDKDT----F   76 (164)
Q Consensus        11 ~v~~a~~L~~~~-~~~~dpyv~v~~~~-------~-~~T~~~~~t~~P~w~e~~~f~~~~-~~~~l~i~v~d~~~----~   76 (164)
                      -.++|++|+..+ .+.+||||++++.+       . ++|++++++.||.|+|+|.|.+.. ....|.|+|||++.    .
T Consensus         5 ~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~   84 (120)
T cd04048           5 LSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDL   84 (120)
T ss_pred             EEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCC
Confidence            347899999988 88999999999863       2 899999999999999999998653 34569999999997    7


Q ss_pred             CCCceeEEEEEechhhhhhhc
Q 031204           77 SLDDKMGDAEFYITPFLEALK   97 (164)
Q Consensus        77 ~~~~~lG~~~v~l~~l~~~~~   97 (164)
                      +++++||++.+++.++..+..
T Consensus        85 ~~~d~iG~~~i~l~~l~~~~~  105 (120)
T cd04048          85 SDHDFLGEAECTLGEIVSSPG  105 (120)
T ss_pred             CCCcEEEEEEEEHHHHhcCCC
Confidence            899999999999999987543

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma

>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain

Probab=99.74  E-value=3e-17  Score=110.20  Aligned_cols=92  Identities=28%  Similarity=0.405  Sum_probs=79.3

Q ss_pred             ccEEEEEEEEEeEcCCCCC-CCCCCcEEEEEECC-----E-EeeeeeeCCCCCeEecEEEEEEeCC----CCcEEEEEEe
Q 031204            4 LMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGK-----Q-LKTRVVKNNVNPEWNEDLTLSISDS----NLPIKLTVYD   72 (164)
Q Consensus         4 ~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~-----~-~~T~~~~~t~~P~w~e~~~f~~~~~----~~~l~i~v~d   72 (164)
                      ..+.|+|+|++|++|++.+ .+.+||||++.+.+     . ++|++++++.||.|||+|.|.....    ...+.|+|||
T Consensus        13 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d   92 (123)
T cd04035          13 ANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVLD   92 (123)
T ss_pred             CCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEEE
Confidence            4578999999999999888 77899999999842     2 9999999999999999999964322    3569999999


Q ss_pred             CCCCCCCceeEEEEEechhhhhhh
Q 031204           73 KDTFSLDDKMGDAEFYITPFLEAL   96 (164)
Q Consensus        73 ~~~~~~~~~lG~~~v~l~~l~~~~   96 (164)
                      ++.. .+++||++.++++++..+.
T Consensus        93 ~~~~-~~~~iG~~~i~l~~l~~~~  115 (123)
T cd04035          93 EDRF-GNDFLGETRIPLKKLKPNQ  115 (123)
T ss_pred             cCCc-CCeeEEEEEEEcccCCCCc
Confidence            9988 8999999999999988754

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15

Probab=99.73  E-value=3.9e-17  Score=111.68  Aligned_cols=89  Identities=21%  Similarity=0.313  Sum_probs=76.6

Q ss_pred             ccEEEEEEEEEeEcCCCCCCCCCCcEEEEEECC-----E-EeeeeeeCCCCCeEecEEEEEEeCC---CCcEEEEEEeCC
Q 031204            4 LMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGK-----Q-LKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTVYDKD   74 (164)
Q Consensus         4 ~~g~L~v~v~~a~~L~~~~~~~~dpyv~v~~~~-----~-~~T~~~~~t~~P~w~e~~~f~~~~~---~~~l~i~v~d~~   74 (164)
                      ..++|.|+|++|+||++.+.+.+||||++.+.+     . ++|++.+++.||.|||+|.|.+...   ...|.|+||+.+
T Consensus        13 ~~~~L~V~V~~a~nL~~~~~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~~~   92 (137)
T cd08409          13 TLNRLTVVVLRARGLRQLDHAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVMQSG   92 (137)
T ss_pred             CCCeEEEEEEEecCCCcccCCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEEeCC
Confidence            457899999999999987767799999999863     2 7899999999999999999998532   356999999999


Q ss_pred             CCCCCceeEEEEEechhh
Q 031204           75 TFSLDDKMGDAEFYITPF   92 (164)
Q Consensus        75 ~~~~~~~lG~~~v~l~~l   92 (164)
                      ..+++++||++.+.....
T Consensus        93 ~~~~~~~lG~v~ig~~~~  110 (137)
T cd08409          93 GVRKSKLLGRVVLGPFMY  110 (137)
T ss_pred             CCCCcceEEEEEECCccc
Confidence            988999999999986543

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id

>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]

Probab=99.72  E-value=3e-17  Score=133.04  Aligned_cols=121  Identities=21%  Similarity=0.329  Sum_probs=106.9

Q ss_pred             EEEEEEEEEeEcCCCCC-CCCCCcEEEEEECCE--EeeeeeeCCCCCeEecEEEEEEeCCCCcEEEEEEeCCCCCCCcee
Q 031204            6 GLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQ--LKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSLDDKM   82 (164)
Q Consensus         6 g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~~--~~T~~~~~t~~P~w~e~~~f~~~~~~~~l~i~v~d~~~~~~~~~l   82 (164)
                      ..|.|.|.+|+||++.+ .|..||||.+.++..  .||.++.+++.|-|.|+|.|++...-..|.|.|||.| +++|+.|
T Consensus         5 ~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~iP~~F~~l~fYv~D~d-~~~D~~I   83 (800)
T KOG2059|consen    5 QSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEIPRTFRYLSFYVWDRD-LKRDDII   83 (800)
T ss_pred             cceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhhhcCCccccceEEecCcceeeEEEEEeccc-ccccccc
Confidence            45889999999999999 899999999999987  9999999999999999999999866678999999999 8899999


Q ss_pred             EEEEEechhhhhhhcccccCCCCceEEEEeccCCCccccccceeEeeCCeEEEEEeEEecccc-----eeeEEEEEEEEe
Q 031204           83 GDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRNVE-----VGEVKIQLEWID  157 (164)
Q Consensus        83 G~~~v~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~-----~G~l~l~l~~~~  157 (164)
                      |.+.+.=+++......                                     +.||.|..+.     +|+|||++++.+
T Consensus        84 GKvai~re~l~~~~~~-------------------------------------d~W~~L~~VD~dsEVQG~v~l~l~~~e  126 (800)
T KOG2059|consen   84 GKVAIKREDLHMYPGK-------------------------------------DTWFSLQPVDPDSEVQGKVHLELALTE  126 (800)
T ss_pred             ceeeeeHHHHhhCCCC-------------------------------------ccceeccccCCChhhceeEEEEEEecc
Confidence            9999988887764432                                     7788887654     699999999999


Q ss_pred             cCCCCCC
Q 031204          158 IPGSRGL  164 (164)
Q Consensus       158 ~~~~~~~  164 (164)
                      ....+|+
T Consensus       127 ~~~~~~~  133 (800)
T KOG2059|consen  127 AIQSSGL  133 (800)
T ss_pred             ccCCCcc
Confidence            8887764

>cd04047 C2B_Copine C2 domain second repeat in Copine

Probab=99.70  E-value=2.5e-16  Score=103.62  Aligned_cols=85  Identities=31%  Similarity=0.542  Sum_probs=72.6

Q ss_pred             EEEEEeEcCCCCC-CCCCCcEEEEEECC------E-EeeeeeeCCCCCeEecEEEEEEeC-----CCCcEEEEEEeCCCC
Q 031204           10 VHVLRGVNLAVRD-VVSSDPYVVIKMGK------Q-LKTRVVKNNVNPEWNEDLTLSISD-----SNLPIKLTVYDKDTF   76 (164)
Q Consensus        10 v~v~~a~~L~~~~-~~~~dpyv~v~~~~------~-~~T~~~~~t~~P~w~e~~~f~~~~-----~~~~l~i~v~d~~~~   76 (164)
                      +-.++|++|+..+ .+.+||||++++.+      . ++|++++++.||.|| +|.|....     ....|.|+|||++..
T Consensus         4 ~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~   82 (110)
T cd04047           4 ELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSS   82 (110)
T ss_pred             EEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCC
Confidence            4456899999998 78999999998742      2 999999999999999 68887532     246799999999999


Q ss_pred             CCCceeEEEEEechhhhhh
Q 031204           77 SLDDKMGDAEFYITPFLEA   95 (164)
Q Consensus        77 ~~~~~lG~~~v~l~~l~~~   95 (164)
                      ++|++||++.++++++...
T Consensus        83 ~~d~~iG~~~~~l~~l~~~  101 (110)
T cd04047          83 GKHDLIGEFETTLDELLKS  101 (110)
T ss_pred             CCCcEEEEEEEEHHHHhcC
Confidence            9999999999999999853

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom

>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking

Probab=99.67  E-value=3.8e-16  Score=97.42  Aligned_cols=79  Identities=34%  Similarity=0.625  Sum_probs=70.8

Q ss_pred             EEEEEEEeEcCCCCC-CCCCCcEEEEEECC---E-EeeeeeeCCCCCeEecEEEEEEeCC-CCcEEEEEEeCCCCCCCce
Q 031204            8 LRVHVLRGVNLAVRD-VVSSDPYVVIKMGK---Q-LKTRVVKNNVNPEWNEDLTLSISDS-NLPIKLTVYDKDTFSLDDK   81 (164)
Q Consensus         8 L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~---~-~~T~~~~~t~~P~w~e~~~f~~~~~-~~~l~i~v~d~~~~~~~~~   81 (164)
                      |+|+|.+|++|+..+ .+.++||+++.+.+   . ++|++..++.+|.|+|+|.|.+..+ ...|.|+|||.+..+++++
T Consensus         1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~   80 (85)
T PF00168_consen    1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDEL   80 (85)
T ss_dssp             EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEE
T ss_pred             CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCE
Confidence            789999999999877 77999999999987   5 9999999999999999999997543 3459999999999988999


Q ss_pred             eEEEE
Q 031204           82 MGDAE   86 (164)
Q Consensus        82 lG~~~   86 (164)
                      ||++.
T Consensus        81 iG~~~   85 (85)
T PF00168_consen   81 IGEVK   85 (85)
T ss_dssp             EEEEE
T ss_pred             EEEEC
Confidence            99874

C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....

>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.62  E-value=7.5e-16  Score=124.59  Aligned_cols=91  Identities=30%  Similarity=0.506  Sum_probs=82.1

Q ss_pred             cEEEEEEEEEeEcCCCCC-CCCCCcEEEEEECCE-EeeeeeeCCCCCeEecEEEEEEeCCCCcEEEEEEeCCC-------
Q 031204            5 MGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQ-LKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDT-------   75 (164)
Q Consensus         5 ~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~~-~~T~~~~~t~~P~w~e~~~f~~~~~~~~l~i~v~d~~~-------   75 (164)
                      ...++++|++|++|..++ .|++|||+...+++. .+|+++...+||+|||.|.|++.+....|++.|||.+.       
T Consensus       294 sakitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechnstdrikvrvwded~dlksklr  373 (1283)
T KOG1011|consen  294 SAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNSTDRIKVRVWDEDNDLKSKLR  373 (1283)
T ss_pred             ceeeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecCCCceeEEEEecCcccHHHHHH
Confidence            467899999999999999 999999999999998 99999999999999999999999988899999999874       


Q ss_pred             ----CCCCceeEEEEEechhhhhh
Q 031204           76 ----FSLDDKMGDAEFYITPFLEA   95 (164)
Q Consensus        76 ----~~~~~~lG~~~v~l~~l~~~   95 (164)
                          -.+|||+|+..|.+..+..+
T Consensus       374 qkl~resddflgqtvievrtlsge  397 (1283)
T KOG1011|consen  374 QKLTRESDDFLGQTVIEVRTLSGE  397 (1283)
T ss_pred             HHhhhcccccccceeEEEEecccc
Confidence                23789999999988776543

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

Probab=99.59  E-value=2.7e-14  Score=121.46  Aligned_cols=94  Identities=27%  Similarity=0.516  Sum_probs=87.2

Q ss_pred             cccEEEEEEEEEeEcCCCCC---CCCCCcEEEEEECCE--EeeeeeeCCCCCeEecEEEEEEeCCCCcEEEEEEeCCCCC
Q 031204            3 NLMGLLRVHVLRGVNLAVRD---VVSSDPYVVIKMGKQ--LKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFS   77 (164)
Q Consensus         3 ~~~g~L~v~v~~a~~L~~~~---~~~~dpyv~v~~~~~--~~T~~~~~t~~P~w~e~~~f~~~~~~~~l~i~v~d~~~~~   77 (164)
                      .++|+|.|+|.+|++|...+   .+..|||+++.+.+.  .+|++.+++.||+|||+|.+.+..-+++|.+++||.+...
T Consensus       433 ~aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r~~gkT~v~~nt~nPvwNEt~Yi~lns~~d~L~LslyD~n~~~  512 (1227)
T COG5038         433 TAIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLNSFTDPLNLSLYDFNSFK  512 (1227)
T ss_pred             CeeEEEEEEEeeccCcccccccccCCCCceEEEEeccccCCccceeeccCCccccceEEEEecccCCceeEEEEeccccC
Confidence            47899999999999999888   789999999998876  9999999999999999999999888899999999998888


Q ss_pred             CCceeEEEEEechhhhhhh
Q 031204           78 LDDKMGDAEFYITPFLEAL   96 (164)
Q Consensus        78 ~~~~lG~~~v~l~~l~~~~   96 (164)
                      +|+.+|++.++|..+....
T Consensus       513 sd~vvG~~~l~L~~L~~~~  531 (1227)
T COG5038         513 SDKVVGSTQLDLALLHQNP  531 (1227)
T ss_pred             CcceeeeEEechHHhhhcc
Confidence            9999999999999887754

>PLN02270 phospholipase D alpha

Probab=99.58  E-value=4.2e-14  Score=118.04  Aligned_cols=121  Identities=20%  Similarity=0.344  Sum_probs=101.6

Q ss_pred             ccEEEEEEEEEeEcCCCCC-------------------CCCCCcEEEEEECCE--EeeeeeeC-CCCCeEecEEEEEEeC
Q 031204            4 LMGLLRVHVLRGVNLAVRD-------------------VVSSDPYVVIKMGKQ--LKTRVVKN-NVNPEWNEDLTLSISD   61 (164)
Q Consensus         4 ~~g~L~v~v~~a~~L~~~~-------------------~~~~dpyv~v~~~~~--~~T~~~~~-t~~P~w~e~~~f~~~~   61 (164)
                      .-|.|.++|.+|++|++.+                   .+++|||+.+.+++.  .||+++.+ ..||.|+|+|.+++..
T Consensus         6 lhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah   85 (808)
T PLN02270          6 LHGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAH   85 (808)
T ss_pred             eecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeecc
Confidence            4589999999999998631                   246799999999987  99999988 4699999999999998


Q ss_pred             CCCcEEEEEEeCCCCCCCceeEEEEEechhhhhhhcccccCCCCceEEEEeccCCCccccccceeEeeCCeEEEEEeEEe
Q 031204           62 SNLPIKLTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRL  141 (164)
Q Consensus        62 ~~~~l~i~v~d~~~~~~~~~lG~~~v~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l  141 (164)
                      ....+.|+|.|.+.+ ...+||.+.+++.++..+...                                     +.||++
T Consensus        86 ~~~~v~f~vkd~~~~-g~~~ig~~~~p~~~~~~g~~i-------------------------------------~~~~~~  127 (808)
T PLN02270         86 MASNIIFTVKDDNPI-GATLIGRAYIPVEEILDGEEV-------------------------------------DRWVEI  127 (808)
T ss_pred             CcceEEEEEecCCcc-CceEEEEEEEEHHHhcCCCcc-------------------------------------ccEEec
Confidence            888899999999998 556999999999999886543                                     778877


Q ss_pred             cccc------eeeEEEEEEEEecCCCC
Q 031204          142 RNVE------VGEVKIQLEWIDIPGSR  162 (164)
Q Consensus       142 ~~~~------~G~l~l~l~~~~~~~~~  162 (164)
                      -+..      .-+|+++++|.++....
T Consensus       128 ~~~~~~p~~~~~~~~~~~~f~~~~~~~  154 (808)
T PLN02270        128 LDNDKNPIHGGSKIHVKLQYFEVTKDR  154 (808)
T ss_pred             cCCCCCcCCCCCEEEEEEEEEEcccCc
Confidence            5532      24899999999987643

>smart00239 C2 Protein kinase C conserved region 2 (CalB)

Probab=99.57  E-value=7e-14  Score=89.25  Aligned_cols=90  Identities=34%  Similarity=0.589  Sum_probs=79.2

Q ss_pred             EEEEEEEEeEcCCCCC-CCCCCcEEEEEECC---E-EeeeeeeCCCCCeEecEEEEEEeCC-CCcEEEEEEeCCCCCCCc
Q 031204            7 LLRVHVLRGVNLAVRD-VVSSDPYVVIKMGK---Q-LKTRVVKNNVNPEWNEDLTLSISDS-NLPIKLTVYDKDTFSLDD   80 (164)
Q Consensus         7 ~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~---~-~~T~~~~~t~~P~w~e~~~f~~~~~-~~~l~i~v~d~~~~~~~~   80 (164)
                      .|.|.|++|+++.... .+..+||+.+.+..   . ++|++..++.+|.|+|+|.|.+... ...|.|+||+....+.+.
T Consensus         1 ~l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~   80 (101)
T smart00239        1 TLTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDD   80 (101)
T ss_pred             CeEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCc
Confidence            3789999999998877 46789999999985   4 9999999999999999999999876 677999999999887789


Q ss_pred             eeEEEEEechhhhhhh
Q 031204           81 KMGDAEFYITPFLEAL   96 (164)
Q Consensus        81 ~lG~~~v~l~~l~~~~   96 (164)
                      ++|.+.+++.++..+.
T Consensus        81 ~~G~~~~~l~~~~~~~   96 (101)
T smart00239       81 FIGQVTIPLSDLLLGG   96 (101)
T ss_pred             eeEEEEEEHHHcccCc
Confidence            9999999998887654

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.

>cd00030 C2 C2 domain

Probab=99.56  E-value=7.7e-14  Score=88.69  Aligned_cols=86  Identities=43%  Similarity=0.741  Sum_probs=77.2

Q ss_pred             EEEEEEEeEcCCCCC-CCCCCcEEEEEECC-E-EeeeeeeCCCCCeEecEEEEEEeC-CCCcEEEEEEeCCCCCCCceeE
Q 031204            8 LRVHVLRGVNLAVRD-VVSSDPYVVIKMGK-Q-LKTRVVKNNVNPEWNEDLTLSISD-SNLPIKLTVYDKDTFSLDDKMG   83 (164)
Q Consensus         8 L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~-~-~~T~~~~~t~~P~w~e~~~f~~~~-~~~~l~i~v~d~~~~~~~~~lG   83 (164)
                      |.|.|++|+++.... ....+|||.+.+.. . ++|++..++.+|.|++.|.|.+.. ....+.|+||+.+..+.+.++|
T Consensus         1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ig   80 (102)
T cd00030           1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDFLG   80 (102)
T ss_pred             CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCceeE
Confidence            578999999998755 66899999999998 6 999999999999999999999986 4566999999999887789999


Q ss_pred             EEEEechhhh
Q 031204           84 DAEFYITPFL   93 (164)
Q Consensus        84 ~~~v~l~~l~   93 (164)
                      .+.+++.++.
T Consensus        81 ~~~~~l~~l~   90 (102)
T cd00030          81 EVEIPLSELL   90 (102)
T ss_pred             EEEEeHHHhh
Confidence            9999999987

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.

>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin

Probab=99.55  E-value=8.7e-14  Score=94.04  Aligned_cols=89  Identities=26%  Similarity=0.287  Sum_probs=75.7

Q ss_pred             EEEEEEEeEcCCCCC---CC--CCCcEEEEEECCE----EeeeeeeCCCC--CeEecEEEEEEeC---------------
Q 031204            8 LRVHVLRGVNLAVRD---VV--SSDPYVVIKMGKQ----LKTRVVKNNVN--PEWNEDLTLSISD---------------   61 (164)
Q Consensus         8 L~v~v~~a~~L~~~~---~~--~~dpyv~v~~~~~----~~T~~~~~t~~--P~w~e~~~f~~~~---------------   61 (164)
                      |+|.|.+|++++..+   .|  .+||||++.+.+.    ++|.+..++.|  |.||++|.|++..               
T Consensus         2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~   81 (133)
T cd08374           2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF   81 (133)
T ss_pred             EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence            789999999966543   45  4999999999862    99999999999  9999999998754               


Q ss_pred             ------C---CCcEEEEEEeCCCCCCCceeEEEEEechhhhhhh
Q 031204           62 ------S---NLPIKLTVYDKDTFSLDDKMGDAEFYITPFLEAL   96 (164)
Q Consensus        62 ------~---~~~l~i~v~d~~~~~~~~~lG~~~v~l~~l~~~~   96 (164)
                            .   ...|.++|||.|.+++|++||.+++++..+..+.
T Consensus        82 ~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~  125 (133)
T cd08374          82 WSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPA  125 (133)
T ss_pred             cccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccccc
Confidence                  1   2459999999999999999999999999877653

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>PLN02223 phosphoinositide phospholipase C

Probab=99.51  E-value=5.1e-13  Score=107.61  Aligned_cols=92  Identities=26%  Similarity=0.498  Sum_probs=77.9

Q ss_pred             EEEEEEEEEeEcCCCC-----C-CCCCCcEEEEEECCE------EeeeeeeCCCCCeEecEEEEEEeCCCCc-EEEEEEe
Q 031204            6 GLLRVHVLRGVNLAVR-----D-VVSSDPYVVIKMGKQ------LKTRVVKNNVNPEWNEDLTLSISDSNLP-IKLTVYD   72 (164)
Q Consensus         6 g~L~v~v~~a~~L~~~-----~-~~~~dpyv~v~~~~~------~~T~~~~~t~~P~w~e~~~f~~~~~~~~-l~i~v~d   72 (164)
                      .+|.|+|++|++++..     + ...+||||+|.+.+.      .+|.+..++.||.|||+|.|.+..|+.. |.|+|+|
T Consensus       409 ~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~D  488 (537)
T PLN02223        409 KILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVYD  488 (537)
T ss_pred             eEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEEe
Confidence            5799999999987511     1 356899999998753      6788777899999999999999888755 8999999


Q ss_pred             CCCCCCCceeEEEEEechhhhhhhc
Q 031204           73 KDTFSLDDKMGDAEFYITPFLEALK   97 (164)
Q Consensus        73 ~~~~~~~~~lG~~~v~l~~l~~~~~   97 (164)
                      .+..+.++|+|+..+|+..+..+..
T Consensus       489 ~D~~~~ddfiGQ~~LPv~~Lr~GyR  513 (537)
T PLN02223        489 YEVSTADAFCGQTCLPVSELIEGIR  513 (537)
T ss_pred             cCCCCCCcEEEEEecchHHhcCCce
Confidence            9988889999999999999888653

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

Probab=99.47  E-value=1.8e-13  Score=116.55  Aligned_cols=99  Identities=29%  Similarity=0.446  Sum_probs=89.2

Q ss_pred             CCcccEEEEEEEEEeEcCCCCC-CCCCCcEEEEEECCE--EeeeeeeCCCCCeEecEEEEEEeCC-CCcEEEEEEeCCCC
Q 031204            1 MENLMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQ--LKTRVVKNNVNPEWNEDLTLSISDS-NLPIKLTVYDKDTF   76 (164)
Q Consensus         1 ~~~~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~~--~~T~~~~~t~~P~w~e~~~f~~~~~-~~~l~i~v~d~~~~   76 (164)
                      |-.+.|-|+|.+.+|.||+..+ +|.+||||++.+.+.  ++|+++++++||.|||++.+++.+. ...+.+.|+|++..
T Consensus      1035 mv~nsG~l~I~~~~~~nl~~~d~ng~sDpfv~~~ln~k~vyktkv~KktlNPvwNEe~~i~v~~r~~D~~~i~v~Dwd~~ 1114 (1227)
T COG5038        1035 MVENSGYLTIMLRSGENLPSSDENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLNRVKDVLTINVNDWDSG 1114 (1227)
T ss_pred             eecccCcEEEEEeccCCCcccccCCCCCceEEEEecceecccccchhccCCCCccccceEeeeccccceEEEEEeecccC
Confidence            3457899999999999999999 888999999999987  9999999999999999999999754 45699999999999


Q ss_pred             CCCceeEEEEEechhhhhhhccc
Q 031204           77 SLDDKMGDAEFYITPFLEALKMR   99 (164)
Q Consensus        77 ~~~~~lG~~~v~l~~l~~~~~~~   99 (164)
                      .+++.||.+.++|..+..+....
T Consensus      1115 ~knd~lg~~~idL~~l~~~~~~n 1137 (1227)
T COG5038        1115 EKNDLLGTAEIDLSKLEPGGTTN 1137 (1227)
T ss_pred             CCccccccccccHhhcCcCCccc
Confidence            99999999999999998876543

>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.43  E-value=5.6e-13  Score=106.23  Aligned_cols=88  Identities=32%  Similarity=0.473  Sum_probs=76.7

Q ss_pred             ccEEEEEEEEEeEcCCCCC-CCCCCcEEEEEECC---E---EeeeeeeCCCCCeEecEEEEEEeCC---CCcEEEEEEeC
Q 031204            4 LMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGK---Q---LKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTVYDK   73 (164)
Q Consensus         4 ~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~---~---~~T~~~~~t~~P~w~e~~~f~~~~~---~~~l~i~v~d~   73 (164)
                      ..|+|+|.|++|++|+..+ .+..||||++.+..   .   .+|.+.+++.||+|||+|.|.+...   +..+.|+|||+
T Consensus       296 ~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~l~l~V~d~  375 (421)
T KOG1028|consen  296 TAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAEVSLELTVWDH  375 (421)
T ss_pred             CCCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhheeEEEEEEEEc
Confidence            3589999999999999999 78899999999853   1   8999999999999999999988632   34699999999


Q ss_pred             CCCCCCceeEEEEEechh
Q 031204           74 DTFSLDDKMGDAEFYITP   91 (164)
Q Consensus        74 ~~~~~~~~lG~~~v~l~~   91 (164)
                      +.++++++||++.+....
T Consensus       376 d~~~~~~~iG~~~lG~~~  393 (421)
T KOG1028|consen  376 DTLGSNDLIGRCILGSDS  393 (421)
T ss_pred             ccccccceeeEEEecCCC
Confidence            999999999998887764

>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]

Probab=99.42  E-value=1.9e-12  Score=106.61  Aligned_cols=92  Identities=25%  Similarity=0.428  Sum_probs=78.7

Q ss_pred             EEEEEEEEeEcCCCCC-----CCCCCcEEEEEECCE------Eeee-eeeCCCCCeEecEEEEEEeCCCCc-EEEEEEeC
Q 031204            7 LLRVHVLRGVNLAVRD-----VVSSDPYVVIKMGKQ------LKTR-VVKNNVNPEWNEDLTLSISDSNLP-IKLTVYDK   73 (164)
Q Consensus         7 ~L~v~v~~a~~L~~~~-----~~~~dpyv~v~~~~~------~~T~-~~~~t~~P~w~e~~~f~~~~~~~~-l~i~v~d~   73 (164)
                      +|.|.|+++.++++..     ....|||+.+++.+.      .+|+ +..++-+|.|+|+|.|.+..|+-. |.|.|+|.
T Consensus       617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~  696 (746)
T KOG0169|consen  617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY  696 (746)
T ss_pred             eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence            6999999999776544     246799999998753      8999 555689999999999999988865 89999999


Q ss_pred             CCCCCCceeEEEEEechhhhhhhcc
Q 031204           74 DTFSLDDKMGDAEFYITPFLEALKM   98 (164)
Q Consensus        74 ~~~~~~~~lG~~~v~l~~l~~~~~~   98 (164)
                      +..++|+|+|+..+|+..+..+.++
T Consensus       697 d~~~~ddF~GQ~tlP~~~L~~GyRh  721 (746)
T KOG0169|consen  697 DYIGKDDFIGQTTLPVSELRQGYRH  721 (746)
T ss_pred             CCCCcccccceeeccHHHhhCceee
Confidence            9999999999999999999887654

>PLN02952 phosphoinositide phospholipase C

Probab=99.40  E-value=7.1e-12  Score=102.79  Aligned_cols=92  Identities=21%  Similarity=0.365  Sum_probs=77.4

Q ss_pred             cEEEEEEEEEeEcCCCC--C-----CCCCCcEEEEEECC-----E-EeeeeeeCCCCCeEecEEEEEEeCCCCc-EEEEE
Q 031204            5 MGLLRVHVLRGVNLAVR--D-----VVSSDPYVVIKMGK-----Q-LKTRVVKNNVNPEWNEDLTLSISDSNLP-IKLTV   70 (164)
Q Consensus         5 ~g~L~v~v~~a~~L~~~--~-----~~~~dpyv~v~~~~-----~-~~T~~~~~t~~P~w~e~~~f~~~~~~~~-l~i~v   70 (164)
                      ..+|.|+|++|++++..  +     ....||||++.+-+     . .+|+++.++.||.|||+|.|.+..++.. +.|.|
T Consensus       469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V  548 (599)
T PLN02952        469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEV  548 (599)
T ss_pred             cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEE
Confidence            46799999999987532  1     23469999999865     2 8999999999999999999999877654 89999


Q ss_pred             EeCCCCCCCceeEEEEEechhhhhhh
Q 031204           71 YDKDTFSLDDKMGDAEFYITPFLEAL   96 (164)
Q Consensus        71 ~d~~~~~~~~~lG~~~v~l~~l~~~~   96 (164)
                      ||++..+.++++|++.+++..+..+.
T Consensus       549 ~D~D~~~~ddfiGq~~lPv~~Lr~Gy  574 (599)
T PLN02952        549 REYDMSEKDDFGGQTCLPVSELRPGI  574 (599)
T ss_pred             EecCCCCCCCeEEEEEcchhHhcCCc
Confidence            99998888999999999999988864

>PLN02230 phosphoinositide phospholipase C 4

Probab=99.39  E-value=4.4e-12  Score=103.86  Aligned_cols=93  Identities=19%  Similarity=0.337  Sum_probs=78.4

Q ss_pred             cEEEEEEEEEeEcCCCC------C-CCCCCcEEEEEECCE------EeeeeeeCCCCCeEecEEEEEEeCCCCc-EEEEE
Q 031204            5 MGLLRVHVLRGVNLAVR------D-VVSSDPYVVIKMGKQ------LKTRVVKNNVNPEWNEDLTLSISDSNLP-IKLTV   70 (164)
Q Consensus         5 ~g~L~v~v~~a~~L~~~------~-~~~~dpyv~v~~~~~------~~T~~~~~t~~P~w~e~~~f~~~~~~~~-l~i~v   70 (164)
                      ..+|.|+|+.+.+++..      + ....||||+|.+-+.      .+|++..++.||.|||+|.|.+.-++-. |.|.|
T Consensus       468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V  547 (598)
T PLN02230        468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEV  547 (598)
T ss_pred             CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEE
Confidence            36799999999987521      1 345799999998642      7889888899999999999999877754 89999


Q ss_pred             EeCCCCCCCceeEEEEEechhhhhhhc
Q 031204           71 YDKDTFSLDDKMGDAEFYITPFLEALK   97 (164)
Q Consensus        71 ~d~~~~~~~~~lG~~~v~l~~l~~~~~   97 (164)
                      +|++....++|+|+..+++..|..+..
T Consensus       548 ~d~d~~~~ddfiGQ~~lPv~~Lr~GyR  574 (598)
T PLN02230        548 HEHDINEKDDFGGQTCLPVSEIRQGIH  574 (598)
T ss_pred             EECCCCCCCCEEEEEEcchHHhhCccc
Confidence            999998899999999999999988754

>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae

Probab=99.37  E-value=5.8e-12  Score=80.85  Aligned_cols=86  Identities=21%  Similarity=0.324  Sum_probs=72.9

Q ss_pred             EEEEEEEeEcCCCCC----CCCCCcEEEEEECCE--EeeeeeeCCCCCeEecEEEEEEeCCCCcEEEEEEeCCCCCCCce
Q 031204            8 LRVHVLRGVNLAVRD----VVSSDPYVVIKMGKQ--LKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSLDDK   81 (164)
Q Consensus         8 L~v~v~~a~~L~~~~----~~~~dpyv~v~~~~~--~~T~~~~~t~~P~w~e~~~f~~~~~~~~l~i~v~d~~~~~~~~~   81 (164)
                      |+|+|.+|+++....    .+.++||+.+++++.  .||++   +.||.|||+|.|++. ....+.+.|||...- ..-.
T Consensus         1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~---srnd~WnE~F~i~Vd-k~nEiel~VyDk~~~-~~~P   75 (109)
T cd08689           1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP---SRNDRWNEDFEIPVE-KNNEEEVIVYDKGGD-QPVP   75 (109)
T ss_pred             CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC---CCCCcccceEEEEec-CCcEEEEEEEeCCCC-eecc
Confidence            689999999998776    568899999999987  88877   589999999999995 566799999998653 5568


Q ss_pred             eEEEEEechhhhhhhcc
Q 031204           82 MGDAEFYITPFLEALKM   98 (164)
Q Consensus        82 lG~~~v~l~~l~~~~~~   98 (164)
                      +|...+.++++..+...
T Consensus        76 i~llW~~~sdi~Ee~Rr   92 (109)
T cd08689          76 VGLLWLRLSDIAEEIRK   92 (109)
T ss_pred             eeeehhhHHHHHHHHHH
Confidence            99999999999887543

This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]

Probab=99.33  E-value=6.4e-12  Score=104.03  Aligned_cols=92  Identities=25%  Similarity=0.421  Sum_probs=78.7

Q ss_pred             EEEEEEEEEeEcCCCCCCCCCCcEEEEEECCE-------EeeeeeeCCCCCeEe-cEEEEEEeCCCCc-EEEEEEeCCCC
Q 031204            6 GLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQ-------LKTRVVKNNVNPEWN-EDLTLSISDSNLP-IKLTVYDKDTF   76 (164)
Q Consensus         6 g~L~v~v~~a~~L~~~~~~~~dpyv~v~~~~~-------~~T~~~~~t~~P~w~-e~~~f~~~~~~~~-l~i~v~d~~~~   76 (164)
                      -.|.|.|+.|++|+...-+...||+.+.+.+.       ++|.++.+++||+|| |.|+|++.+|+-. |.|.|++.|.+
T Consensus      1065 ~~lsv~vigaRHL~k~gr~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDmf 1144 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLGRSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDMF 1144 (1267)
T ss_pred             eEEEEEEeeccccccCCCCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEeccccc
Confidence            36889999999999665566779999998642       666677789999999 9999999988754 89999999999


Q ss_pred             CCCceeEEEEEechhhhhhhc
Q 031204           77 SLDDKMGDAEFYITPFLEALK   97 (164)
Q Consensus        77 ~~~~~lG~~~v~l~~l~~~~~   97 (164)
                      +...|||++.+|+..+..+..
T Consensus      1145 s~~~FiaqA~yPv~~ik~GfR 1165 (1267)
T KOG1264|consen 1145 SDPNFLAQATYPVKAIKSGFR 1165 (1267)
T ss_pred             CCcceeeeeecchhhhhccce
Confidence            888899999999999887643

>PLN02222 phosphoinositide phospholipase C 2

Probab=99.33  E-value=1.9e-11  Score=100.00  Aligned_cols=94  Identities=20%  Similarity=0.309  Sum_probs=77.9

Q ss_pred             cEEEEEEEEEeEcCC----CCC---CCCCCcEEEEEECCE------EeeeeeeCCCCCeEecEEEEEEeCCCCc-EEEEE
Q 031204            5 MGLLRVHVLRGVNLA----VRD---VVSSDPYVVIKMGKQ------LKTRVVKNNVNPEWNEDLTLSISDSNLP-IKLTV   70 (164)
Q Consensus         5 ~g~L~v~v~~a~~L~----~~~---~~~~dpyv~v~~~~~------~~T~~~~~t~~P~w~e~~~f~~~~~~~~-l~i~v   70 (164)
                      ..+|.|+|+.|++++    ...   ....||||+|.+.+.      .+|+++.++.||.|||+|.|.+..++-. |.|.|
T Consensus       451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V  530 (581)
T PLN02222        451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEV  530 (581)
T ss_pred             cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEE
Confidence            357999999998753    111   346799999998632      8999999989999999999999877754 89999


Q ss_pred             EeCCCCCCCceeEEEEEechhhhhhhcc
Q 031204           71 YDKDTFSLDDKMGDAEFYITPFLEALKM   98 (164)
Q Consensus        71 ~d~~~~~~~~~lG~~~v~l~~l~~~~~~   98 (164)
                      ||++..+.++|+|+..+++..+..+...
T Consensus       531 ~d~D~~~~ddfigq~~lPv~~Lr~GyR~  558 (581)
T PLN02222        531 HEYDMSEKDDFGGQTCLPVWELSQGIRA  558 (581)
T ss_pred             EECCCCCCCcEEEEEEcchhhhhCccce
Confidence            9999888899999999999999887543

>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]

Probab=99.32  E-value=8.2e-12  Score=100.59  Aligned_cols=92  Identities=29%  Similarity=0.536  Sum_probs=83.1

Q ss_pred             cEEEEEEEEEeEcCCCCC--CCCCCcEEEEEECCE-EeeeeeeCCCCCeEe-cEEEEEEeCC---CCcEEEEEEeCCCCC
Q 031204            5 MGLLRVHVLRGVNLAVRD--VVSSDPYVVIKMGKQ-LKTRVVKNNVNPEWN-EDLTLSISDS---NLPIKLTVYDKDTFS   77 (164)
Q Consensus         5 ~g~L~v~v~~a~~L~~~~--~~~~dpyv~v~~~~~-~~T~~~~~t~~P~w~-e~~~f~~~~~---~~~l~i~v~d~~~~~   77 (164)
                      .|.|-|.|..|++||-++  ....|.|+.+++++. ++|.+..+++||.|| +.|.|++.+.   +++|.|+++|++..+
T Consensus         2 pgkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dtys   81 (1169)
T KOG1031|consen    2 PGKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTYS   81 (1169)
T ss_pred             CCcceeEEEeccCCcccccccccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecccccc
Confidence            478899999999999998  557899999999999 999999999999999 7899999754   467999999999999


Q ss_pred             CCceeEEEEEechhhhhhh
Q 031204           78 LDDKMGDAEFYITPFLEAL   96 (164)
Q Consensus        78 ~~~~lG~~~v~l~~l~~~~   96 (164)
                      .+|-||.+.++++.+.-+.
T Consensus        82 andaigkv~i~idpl~~e~  100 (1169)
T KOG1031|consen   82 ANDAIGKVNIDIDPLCLEE  100 (1169)
T ss_pred             cccccceeeeccChHHHHh
Confidence            9999999999999987543

>PLN02228 Phosphoinositide phospholipase C

Probab=99.31  E-value=5.8e-11  Score=96.98  Aligned_cols=92  Identities=17%  Similarity=0.302  Sum_probs=76.7

Q ss_pred             EEEEEEEEEeEcCCC---CC----CCCCCcEEEEEECCE------EeeeeeeCCCCCeE-ecEEEEEEeCCCCc-EEEEE
Q 031204            6 GLLRVHVLRGVNLAV---RD----VVSSDPYVVIKMGKQ------LKTRVVKNNVNPEW-NEDLTLSISDSNLP-IKLTV   70 (164)
Q Consensus         6 g~L~v~v~~a~~L~~---~~----~~~~dpyv~v~~~~~------~~T~~~~~t~~P~w-~e~~~f~~~~~~~~-l~i~v   70 (164)
                      ..|+|+|++|++|+.   ..    ....||||++.+.+.      ++|++..++.||.| +|+|.|.+..++-. |.|.|
T Consensus       431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~V  510 (567)
T PLN02228        431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFKV  510 (567)
T ss_pred             ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEEE
Confidence            479999999998731   11    235799999998642      79999988899999 99999999877754 89999


Q ss_pred             EeCCCCCCCceeEEEEEechhhhhhhc
Q 031204           71 YDKDTFSLDDKMGDAEFYITPFLEALK   97 (164)
Q Consensus        71 ~d~~~~~~~~~lG~~~v~l~~l~~~~~   97 (164)
                      +|.+..+.++|+|+..+++..+..+..
T Consensus       511 ~D~d~~~~d~figq~~lPv~~Lr~GYR  537 (567)
T PLN02228        511 QDYDNDTQNDFAGQTCLPLPELKSGVR  537 (567)
T ss_pred             EeCCCCCCCCEEEEEEcchhHhhCCee
Confidence            999988899999999999999988654

>PLN02352 phospholipase D epsilon

Probab=99.19  E-value=3.1e-10  Score=94.90  Aligned_cols=114  Identities=16%  Similarity=0.216  Sum_probs=88.9

Q ss_pred             ccEEEEEEEEEeEcCCCC----C--CCCCCcEEEEEECCE--EeeeeeeCCCCCeEecEEEEEEeCCC-CcEEEEEEeCC
Q 031204            4 LMGLLRVHVLRGVNLAVR----D--VVSSDPYVVIKMGKQ--LKTRVVKNNVNPEWNEDLTLSISDSN-LPIKLTVYDKD   74 (164)
Q Consensus         4 ~~g~L~v~v~~a~~L~~~----~--~~~~dpyv~v~~~~~--~~T~~~~~t~~P~w~e~~~f~~~~~~-~~l~i~v~d~~   74 (164)
                      .-|+|.++|.+|+-+...    .  ....+||+.+.+++.  .||   .+..||.|+|+|.+++.... ..+.|+|.|  
T Consensus         8 lhg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~--   82 (758)
T PLN02352          8 FHGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT--   82 (758)
T ss_pred             cccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEec--
Confidence            358999999999843321    1  122399999999987  888   55669999999999998776 679999988  


Q ss_pred             CCCCCceeEEEEEechhhhhhhcccccCCCCceEEEEeccCCCccccccceeEeeCCeEEEEEeEEecccc----ee-eE
Q 031204           75 TFSLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRNVE----VG-EV  149 (164)
Q Consensus        75 ~~~~~~~lG~~~v~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~----~G-~l  149 (164)
                         .-.+||.+.+++.++..+..                                    ..+.|+++-+..    .| +|
T Consensus        83 ---~~~~ig~~~~p~~~~~~g~~------------------------------------~~~~~~~~~~~~~~p~~~~~~  123 (758)
T PLN02352         83 ---KCSILGRFHIQAHQIVTEAS------------------------------------FINGFFPLIMENGKPNPELKL  123 (758)
T ss_pred             ---CCeEEEEEEEEHHHhhCCCc------------------------------------ccceEEEcccCCCCCCCCCEE
Confidence               35799999999999887542                                    127788775432    34 99


Q ss_pred             EEEEEEEecCCC
Q 031204          150 KIQLEWIDIPGS  161 (164)
Q Consensus       150 ~l~l~~~~~~~~  161 (164)
                      +++++|.|+...
T Consensus       124 ~~~~~~~~~~~~  135 (758)
T PLN02352        124 RFMLWFRPAELE  135 (758)
T ss_pred             EEEEEEEEhhhC
Confidence            999999999875

>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=99.18  E-value=5.6e-12  Score=103.36  Aligned_cols=91  Identities=29%  Similarity=0.378  Sum_probs=79.7

Q ss_pred             ccEEEEEEEEEeEcCCCCC-CCCCCcEEEEEECCE--------EeeeeeeCCCCCeEecEEEEEEeCC-----CCcEEEE
Q 031204            4 LMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQ--------LKTRVVKNNVNPEWNEDLTLSISDS-----NLPIKLT   69 (164)
Q Consensus         4 ~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~~--------~~T~~~~~t~~P~w~e~~~f~~~~~-----~~~l~i~   69 (164)
                      +-.+|.|.|+.|+++.+.+ +|-+||||++.+.+.        ++|++..+|+||+|+|+|.|.+...     ...+.|+
T Consensus       945 n~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am~~FT 1024 (1103)
T KOG1328|consen  945 NAQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAMLHFT 1024 (1103)
T ss_pred             cccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccccccccceEEEE
Confidence            3456778889999999999 999999999999863        9999999999999999999999632     3459999


Q ss_pred             EEeCCCCCCCceeEEEEEechhhhh
Q 031204           70 VYDKDTFSLDDKMGDAEFYITPFLE   94 (164)
Q Consensus        70 v~d~~~~~~~~~lG~~~v~l~~l~~   94 (164)
                      |+|+|-.+.+||-|++.+.|+++..
T Consensus      1025 VMDHD~L~sNDFaGEA~L~Lg~vpG 1049 (1103)
T KOG1328|consen 1025 VMDHDYLRSNDFAGEAFLELGDVPG 1049 (1103)
T ss_pred             eeccceecccccchHHHHhhCCCCC
Confidence            9999999999999999999988754

>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=99.15  E-value=5.9e-12  Score=103.22  Aligned_cols=88  Identities=26%  Similarity=0.445  Sum_probs=71.1

Q ss_pred             EEEEEEEeEcCCCCC-CCCCCcEEEEEECC------------------------------E--EeeeeeeCCCCCeEecE
Q 031204            8 LRVHVLRGVNLAVRD-VVSSDPYVVIKMGK------------------------------Q--LKTRVVKNNVNPEWNED   54 (164)
Q Consensus         8 L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~------------------------------~--~~T~~~~~t~~P~w~e~   54 (164)
                      +.|.+.+|++|.+++ +|.+|||+...+-.                              .  +-|.+.++|+||.|+|.
T Consensus       116 l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~TLnPkW~Ek  195 (1103)
T KOG1328|consen  116 LNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKTLNPKWSEK  195 (1103)
T ss_pred             HHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccccCCcchhhh
Confidence            446667899999999 89999999986531                              1  45788888999999999


Q ss_pred             EEEEEeCCC-CcEEEEEEeCCC---------------------------------CCC---CceeEEEEEechhhhhh
Q 031204           55 LTLSISDSN-LPIKLTVYDKDT---------------------------------FSL---DDKMGDAEFYITPFLEA   95 (164)
Q Consensus        55 ~~f~~~~~~-~~l~i~v~d~~~---------------------------------~~~---~~~lG~~~v~l~~l~~~   95 (164)
                      |.|.+.+-. ..+++.|||+|.                                 .+.   |||+|++.+++.++...
T Consensus       196 F~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~EiP~~  273 (1103)
T KOG1328|consen  196 FQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLAEIPPD  273 (1103)
T ss_pred             eeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchhcCCcc
Confidence            999998754 569999999884                                 123   78999999999888654

>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]

Probab=98.88  E-value=3.9e-09  Score=86.63  Aligned_cols=96  Identities=17%  Similarity=0.246  Sum_probs=72.2

Q ss_pred             EEeEcCCCCCCCCCCcEEEEEECCE-----EeeeeeeCCCCCeEecEEEEEEeCC---------------C-CcEEEEEE
Q 031204           13 LRGVNLAVRDVVSSDPYVVIKMGKQ-----LKTRVVKNNVNPEWNEDLTLSISDS---------------N-LPIKLTVY   71 (164)
Q Consensus        13 ~~a~~L~~~~~~~~dpyv~v~~~~~-----~~T~~~~~t~~P~w~e~~~f~~~~~---------------~-~~l~i~v~   71 (164)
                      +.++.+-+..++.+|||+++...+.     .+|++.++|.+|.|+|.|.|.+..+               + ..|++++|
T Consensus       138 L~~r~~~P~~~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW  217 (800)
T KOG2059|consen  138 LKTRQGLPIINGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDLW  217 (800)
T ss_pred             hhhcccCceeCCCCCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCceeeEEEeec
Confidence            4455555555678999999998765     5999999999999999999998643               1 34889999


Q ss_pred             e-CCCCCCCceeEEEEEechhhhhhhcccccCCCCceEEEEeccCC
Q 031204           72 D-KDTFSLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSR  116 (164)
Q Consensus        72 d-~~~~~~~~~lG~~~v~l~~l~~~~~~~~~~~~~g~~~~~~~~~~  116 (164)
                      + ++....++|+|++.+++..+......        ..|+-++|.+
T Consensus       218 ~~~~~~~~~~FlGevrv~v~~~~~~s~p--------~~W~~Lqp~~  255 (800)
T KOG2059|consen  218 NDLNLVINDVFLGEVRVPVDVLRQKSSP--------AAWYYLQPRP  255 (800)
T ss_pred             cchhhhhhhhhceeEEeehhhhhhccCc--------cceEEEecCC
Confidence            9 55555799999999999887743221        3456666653

>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]

Probab=98.79  E-value=3.7e-09  Score=89.46  Aligned_cols=85  Identities=27%  Similarity=0.435  Sum_probs=77.5

Q ss_pred             EEEEEEEEeEcCCCCC-CCCCCcEEEEEECCE---EeeeeeeCCCCCeEecEEEEEEeCCCC-cEEEEEEeCCCCCCCce
Q 031204            7 LLRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQ---LKTRVVKNNVNPEWNEDLTLSISDSNL-PIKLTVYDKDTFSLDDK   81 (164)
Q Consensus         7 ~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~~---~~T~~~~~t~~P~w~e~~~f~~~~~~~-~l~i~v~d~~~~~~~~~   81 (164)
                      .++|+|++|-+|.+.| +|..|||+.+.+++.   -++..+.+|+||+|.+-|.+...-+.. .+.++|||+|..+.|+.
T Consensus       614 LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~~d~~  693 (1105)
T KOG1326|consen  614 LVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEAQDEK  693 (1105)
T ss_pred             eEEEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeecccccch
Confidence            4679999999999999 999999999999987   788889999999999999999877654 48999999999999999


Q ss_pred             eEEEEEechh
Q 031204           82 MGDAEFYITP   91 (164)
Q Consensus        82 lG~~~v~l~~   91 (164)
                      +|+..+++++
T Consensus       694 iget~iDLEn  703 (1105)
T KOG1326|consen  694 IGETTIDLEN  703 (1105)
T ss_pred             hhceehhhhh
Confidence            9999999876

>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]

Probab=98.74  E-value=1.1e-08  Score=88.01  Aligned_cols=94  Identities=21%  Similarity=0.237  Sum_probs=78.9

Q ss_pred             ccEEEEEEEEEeEcCCCCC-CCCCCcEEEEEECCE------EeeeeeeCCCCCeEecEEEEEEeC----CCCcEEEEEEe
Q 031204            4 LMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQ------LKTRVVKNNVNPEWNEDLTLSISD----SNLPIKLTVYD   72 (164)
Q Consensus         4 ~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~~------~~T~~~~~t~~P~w~e~~~f~~~~----~~~~l~i~v~d   72 (164)
                      ..|+|+|-|.-|++|+-.. +..+||||++++.+.      .+|+++++|.+|.|||.+.+.-..    ..+.|.++||.
T Consensus      1522 ~~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls 1601 (1639)
T KOG0905|consen 1522 NNGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLS 1601 (1639)
T ss_pred             cCceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeec
Confidence            3588999999999996555 668999999999742      999999999999999999887432    13569999999


Q ss_pred             CCCCCCCceeEEEEEechhhhhhhc
Q 031204           73 KDTFSLDDKMGDAEFYITPFLEALK   97 (164)
Q Consensus        73 ~~~~~~~~~lG~~~v~l~~l~~~~~   97 (164)
                      .+....+.++|.+.++|.++...++
T Consensus      1602 ~~~~~en~~lg~v~i~L~~~~l~kE 1626 (1639)
T KOG0905|consen 1602 NGGLLENVFLGGVNIPLLKVDLLKE 1626 (1639)
T ss_pred             ccceeeeeeeeeeecchhhcchhhh
Confidence            9998889999999999988766543

>PLN02964 phosphatidylserine decarboxylase

Probab=98.50  E-value=2.5e-07  Score=77.09  Aligned_cols=89  Identities=17%  Similarity=0.383  Sum_probs=73.5

Q ss_pred             CCcccEEEEEEEEEeEcCCCCCCCCCCcEEEEE-ECCE-EeeeeeeCCCCCeEecEEEEEEeCCCC-cEEEEEEeCCCCC
Q 031204            1 MENLMGLLRVHVLRGVNLAVRDVVSSDPYVVIK-MGKQ-LKTRVVKNNVNPEWNEDLTLSISDSNL-PIKLTVYDKDTFS   77 (164)
Q Consensus         1 ~~~~~g~L~v~v~~a~~L~~~~~~~~dpyv~v~-~~~~-~~T~~~~~t~~P~w~e~~~f~~~~~~~-~l~i~v~d~~~~~   77 (164)
                      +++..|...+++++|+    ++  -.|+|+.+- ++.+ ++|...++|.||+||+...|.+...+. ...|.|||.+.++
T Consensus        49 ~~~~~~~~~~~~~~~~----~~--~~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  122 (644)
T PLN02964         49 AEDFSGIALLTLVGAE----MK--FKDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNRLS  122 (644)
T ss_pred             cccccCeEEEEeehhh----hc--cCCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCCCC
Confidence            4678899999999987    32  348887754 5566 999999999999999999999975433 3699999999999


Q ss_pred             CCceeEEEEEechhhhhh
Q 031204           78 LDDKMGDAEFYITPFLEA   95 (164)
Q Consensus        78 ~~~~lG~~~v~l~~l~~~   95 (164)
                      .++++|.+.+++.++...
T Consensus       123 ~n~lv~~~e~~~t~f~~k  140 (644)
T PLN02964        123 KNTLVGYCELDLFDFVTQ  140 (644)
T ss_pred             HHHhhhheeecHhhccHH
Confidence            999999999988776654

>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.37  E-value=6.5e-07  Score=68.09  Aligned_cols=86  Identities=29%  Similarity=0.359  Sum_probs=72.3

Q ss_pred             ccEEEEEEEEEeEcCCCCC-CCCCCcEEEEEECCE------EeeeeeeCCCCCeEecEEEEEEeCCC---CcEEEEEEeC
Q 031204            4 LMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQ------LKTRVVKNNVNPEWNEDLTLSISDSN---LPIKLTVYDK   73 (164)
Q Consensus         4 ~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~~------~~T~~~~~t~~P~w~e~~~f~~~~~~---~~l~i~v~d~   73 (164)
                      ....|.|+++++..|..++ ++.+|||+..++...      .+|.+.+++.+|.|+++|.|.+.+.+   ..+.|.|||.
T Consensus       231 ~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~  310 (362)
T KOG1013|consen  231 TTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSVGDY  310 (362)
T ss_pred             CCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcceEEEeeccc
Confidence            3456789999999999999 899999999998632      89999999999999999999997543   4689999999


Q ss_pred             CCCCCCceeEEEEEec
Q 031204           74 DTFSLDDKMGDAEFYI   89 (164)
Q Consensus        74 ~~~~~~~~lG~~~v~l   89 (164)
                      +.-+..+++|-....+
T Consensus       311 ~~G~s~d~~GG~~~g~  326 (362)
T KOG1013|consen  311 DIGKSNDSIGGSMLGG  326 (362)
T ss_pred             CCCcCccCCCcccccc
Confidence            9887888888755543

>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.20  E-value=4.8e-07  Score=68.78  Aligned_cols=91  Identities=23%  Similarity=0.339  Sum_probs=75.4

Q ss_pred             EEEEEEEEEeEcCCCCC-CCCCCcEEEEEECCE------EeeeeeeCCCCCeEecEEEEEEeCC----CCcEEEEEEeCC
Q 031204            6 GLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQ------LKTRVVKNNVNPEWNEDLTLSISDS----NLPIKLTVYDKD   74 (164)
Q Consensus         6 g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~~------~~T~~~~~t~~P~w~e~~~f~~~~~----~~~l~i~v~d~~   74 (164)
                      ..+..++.+|.+|.+++ .+..|||++..+...      .+|++..++.||.|+|+.....-..    ...+.+.|.|.+
T Consensus        93 ~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~~Rk~vcdn~  172 (362)
T KOG1013|consen   93 RMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTHLKVLRKVVCDND  172 (362)
T ss_pred             hhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhhhhhhheeeccCc
Confidence            35678999999999999 889999999998753      7888999999999999877765321    234788999999


Q ss_pred             CCCCCceeEEEEEechhhhhhh
Q 031204           75 TFSLDDKMGDAEFYITPFLEAL   96 (164)
Q Consensus        75 ~~~~~~~lG~~~v~l~~l~~~~   96 (164)
                      .+...+++|+..+++..+....
T Consensus       173 ~~~~~~sqGq~r~~lkKl~p~q  194 (362)
T KOG1013|consen  173 KKTHNESQGQSRVSLKKLKPLQ  194 (362)
T ss_pred             ccccccCcccchhhhhccChhh
Confidence            9988999999999888776654

>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=98.14  E-value=3.9e-06  Score=52.23  Aligned_cols=86  Identities=12%  Similarity=0.186  Sum_probs=64.7

Q ss_pred             EEEEEEeEcCCCCC--CCCCCcEEEE--EECCE--EeeeeeeCCCCCeEecEEEEEEeC---CCCcEEEEEEeCCCCCCC
Q 031204            9 RVHVLRGVNLAVRD--VVSSDPYVVI--KMGKQ--LKTRVVKNNVNPEWNEDLTLSISD---SNLPIKLTVYDKDTFSLD   79 (164)
Q Consensus         9 ~v~v~~a~~L~~~~--~~~~dpyv~v--~~~~~--~~T~~~~~t~~P~w~e~~~f~~~~---~~~~l~i~v~d~~~~~~~   79 (164)
                      -++++.+++|.-..  ...+.-|++-  .+.+.  .+|.+.....||.|.|+|.|.+..   ++-.|-|.|++  ...+.
T Consensus         2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~RK   79 (103)
T cd08684           2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTPRK   79 (103)
T ss_pred             EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec--cCCcc
Confidence            37889999987665  2244455553  33444  899999999999999999999853   34468899999  34478


Q ss_pred             ceeEEEEEechhhhhhh
Q 031204           80 DKMGDAEFYITPFLEAL   96 (164)
Q Consensus        80 ~~lG~~~v~l~~l~~~~   96 (164)
                      ..||.+.+.++++-.+.
T Consensus        80 e~iG~~sL~l~s~geeE   96 (103)
T cd08684          80 RTIGECSLSLRTLSTQE   96 (103)
T ss_pred             ceeeEEEeecccCCHHH
Confidence            89999999998876654

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos

>KOG1327 consensus Copine [Signal transduction mechanisms]

Probab=98.11  E-value=7.7e-06  Score=66.30  Aligned_cols=81  Identities=35%  Similarity=0.615  Sum_probs=67.8

Q ss_pred             EEeEcCCCCC-CCCCCcEEEEEEC--C---E--EeeeeeeCCCCCeEecEEEEEEe-----CCCCcEEEEEEeCCCCCCC
Q 031204           13 LRGVNLAVRD-VVSSDPYVVIKMG--K---Q--LKTRVVKNNVNPEWNEDLTLSIS-----DSNLPIKLTVYDKDTFSLD   79 (164)
Q Consensus        13 ~~a~~L~~~~-~~~~dpyv~v~~~--~---~--~~T~~~~~t~~P~w~e~~~f~~~-----~~~~~l~i~v~d~~~~~~~   79 (164)
                      .+|++|.+++ ++++|||..++--  .   .  ++|.+++++++|.|.+ |.+...     +++..+.+.+||.+..+++
T Consensus       143 ~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~~~~~  221 (529)
T KOG1327|consen  143 FRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDSNGKH  221 (529)
T ss_pred             eeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcccc-cccchhhhcccCCCCceEEEEeccCCCCCc
Confidence            4678898888 8999999998743  1   1  9999999999999998 555542     3457799999999999899


Q ss_pred             ceeEEEEEechhhhh
Q 031204           80 DKMGDAEFYITPFLE   94 (164)
Q Consensus        80 ~~lG~~~v~l~~l~~   94 (164)
                      +++|.+..++..+..
T Consensus       222 ~~ig~~~tt~~~~~~  236 (529)
T KOG1327|consen  222 DLIGKFQTTLSELQE  236 (529)
T ss_pred             CceeEecccHHHhcc
Confidence            999999999988865

>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins

Probab=98.08  E-value=1.4e-05  Score=53.37  Aligned_cols=89  Identities=25%  Similarity=0.397  Sum_probs=67.3

Q ss_pred             EEEEEEEeEcCCCCC--------------CCCCCcEEEEEEC--C--E-EeeeeeeCCCCCeEecEEEEEEe-----CC-
Q 031204            8 LRVHVLRGVNLAVRD--------------VVSSDPYVVIKMG--K--Q-LKTRVVKNNVNPEWNEDLTLSIS-----DS-   62 (164)
Q Consensus         8 L~v~v~~a~~L~~~~--------------~~~~dpyv~v~~~--~--~-~~T~~~~~t~~P~w~e~~~f~~~-----~~-   62 (164)
                      |.|.|.+|.+|+...              .-.-|+|+++.+.  +  . .+|+++-++.-|.|+..+.|.+.     +. 
T Consensus         1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G   80 (143)
T cd08683           1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG   80 (143)
T ss_pred             CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence            467888888887322              1135899999854  2  2 99999999999999999999874     11 


Q ss_pred             ----------CCcEEEEEEeCCCC----------CCCceeEEEEEechhhhhhh
Q 031204           63 ----------NLPIKLTVYDKDTF----------SLDDKMGDAEFYITPFLEAL   96 (164)
Q Consensus        63 ----------~~~l~i~v~d~~~~----------~~~~~lG~~~v~l~~l~~~~   96 (164)
                                ...+.|+||+...-          .+|-+||.+.||+.++....
T Consensus        81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~r  134 (143)
T cd08683          81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKR  134 (143)
T ss_pred             ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcc
Confidence                      24689999996542          24558999999999988754

C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc

>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.92  E-value=4e-06  Score=64.86  Aligned_cols=92  Identities=21%  Similarity=0.317  Sum_probs=76.3

Q ss_pred             ccEEEEEEEEEeEcCCCCC--CCCCCcEEEEEECCE------EeeeeeeCCCCCeEecEEEEEEeCCCCcEEEEEEe-CC
Q 031204            4 LMGLLRVHVLRGVNLAVRD--VVSSDPYVVIKMGKQ------LKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYD-KD   74 (164)
Q Consensus         4 ~~g~L~v~v~~a~~L~~~~--~~~~dpyv~v~~~~~------~~T~~~~~t~~P~w~e~~~f~~~~~~~~l~i~v~d-~~   74 (164)
                      ..|.+.|.|++|++|..+.  ...++||++|++...      .+|+...+|.+|.+-+...|.-..+...|.++||. ..
T Consensus       267 ~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp~~k~Lq~tv~gdyg  346 (405)
T KOG2060|consen  267 SKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSPPGKYLQGTVWGDYG  346 (405)
T ss_pred             ccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCCCccEEEEEEecccc
Confidence            5789999999999999877  347899999998642      88999999999988888888888778889999996 55


Q ss_pred             CCCCCceeEEEEEechhhhhh
Q 031204           75 TFSLDDKMGDAEFYITPFLEA   95 (164)
Q Consensus        75 ~~~~~~~lG~~~v~l~~l~~~   95 (164)
                      ++..+.|+|.+++-+.++-..
T Consensus       347 Rmd~k~fmg~aqi~l~eL~ls  367 (405)
T KOG2060|consen  347 RMDHKSFMGVAQIMLDELNLS  367 (405)
T ss_pred             ccchHHHhhHHHHHhhhhccc
Confidence            666778999988888776543

>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.92  E-value=7.2e-05  Score=62.03  Aligned_cols=90  Identities=18%  Similarity=0.230  Sum_probs=71.7

Q ss_pred             EEEEEEEEeEcCCCCCCCCCCcEEEEEECCE--------EeeeeeeCCCCCeEecEEEEEEeCCC----CcEEEEEEeCC
Q 031204            7 LLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQ--------LKTRVVKNNVNPEWNEDLTLSISDSN----LPIKLTVYDKD   74 (164)
Q Consensus         7 ~L~v~v~~a~~L~~~~~~~~dpyv~v~~~~~--------~~T~~~~~t~~P~w~e~~~f~~~~~~----~~l~i~v~d~~   74 (164)
                      .++|.|+.|.+|.-...|...||+.+.+.+.        +.|+...++-.|.+||+|.|.+.+.+    -.|.+.|-|..
T Consensus      1126 kvtvkvvaandlkwqtsgmFrPFVEV~ivGP~lsDKKRK~~TKtKsnnWaPKyNEtF~f~Lg~e~~Pe~YEL~~~VKDYC 1205 (1283)
T KOG1011|consen 1126 KVTVKVVAANDLKWQTSGMFRPFVEVHIVGPHLSDKKRKFSTKTKSNNWAPKYNETFHFFLGNEGGPEHYELQFCVKDYC 1205 (1283)
T ss_pred             eEEEEEEecccccchhccccccceEEEEecCcccchhhhccccccCCCcCcccCceeEEEeccCCCCceEEEEEeehhhe
Confidence            4677888999988766778899999987531        66777777888999999999986532    34888888877


Q ss_pred             CCCCCceeEEEEEechhhhhhh
Q 031204           75 TFSLDDKMGDAEFYITPFLEAL   96 (164)
Q Consensus        75 ~~~~~~~lG~~~v~l~~l~~~~   96 (164)
                      -...|..+|-+.++|.++...+
T Consensus      1206 FAReDRvvGl~VlqL~~va~kG 1227 (1283)
T KOG1011|consen 1206 FAREDRVVGLAVLQLRSVADKG 1227 (1283)
T ss_pred             eecccceeeeeeeehhhHhhcC
Confidence            6556779999999999988753

>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]

Probab=97.73  E-value=3.7e-05  Score=60.43  Aligned_cols=92  Identities=26%  Similarity=0.446  Sum_probs=69.5

Q ss_pred             EEEEEEEEeEcCCCCC-CCCCCcEEEEEEC--C---E-EeeeeeeCCCCCeEecEEEEEEeCC---C---------CcEE
Q 031204            7 LLRVHVLRGVNLAVRD-VVSSDPYVVIKMG--K---Q-LKTRVVKNNVNPEWNEDLTLSISDS---N---------LPIK   67 (164)
Q Consensus         7 ~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~--~---~-~~T~~~~~t~~P~w~e~~~f~~~~~---~---------~~l~   67 (164)
                      .|.+.|+++.+++... ....|-|+.+.+.  +   + .+|.+++.|.+|.|+|.|.+.+...   +         ..++
T Consensus       368 elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~k  447 (523)
T KOG3837|consen  368 ELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGKK  447 (523)
T ss_pred             HhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCee
Confidence            3556677777776544 2245778888764  2   3 8999999999999999999998641   1         3589


Q ss_pred             EEEEeCCCCC-CCceeEEEEEechhhhhhhcc
Q 031204           68 LTVYDKDTFS-LDDKMGDAEFYITPFLEALKM   98 (164)
Q Consensus        68 i~v~d~~~~~-~~~~lG~~~v~l~~l~~~~~~   98 (164)
                      |++|+...+- +|.++|.+.+.+..+....+.
T Consensus       448 feifhkggf~rSdkl~gt~nikle~Len~cei  479 (523)
T KOG3837|consen  448 FEIFHKGGFNRSDKLTGTGNIKLEILENMCEI  479 (523)
T ss_pred             EEEeeccccccccceeceeeeeehhhhcccch
Confidence            9999988764 677999999999888766544

>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]

Probab=97.66  E-value=7.1e-06  Score=70.21  Aligned_cols=82  Identities=24%  Similarity=0.364  Sum_probs=67.2

Q ss_pred             EEEEEEEeEcCCCCC-CCCCCcEEEEEECCE-EeeeeeeCCCCCeEecEEEEEEeC----C-----CC-cEEEEEEeCCC
Q 031204            8 LRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQ-LKTRVVKNNVNPEWNEDLTLSISD----S-----NL-PIKLTVYDKDT   75 (164)
Q Consensus         8 L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~~-~~T~~~~~t~~P~w~e~~~f~~~~----~-----~~-~l~i~v~d~~~   75 (164)
                      +++.|.+|+.|...+ .+.+|||+.+.+.++ +.|.++.+|++|.|+++..|.-..    +     +- .+.+++||.++
T Consensus       208 lR~yiyQar~L~a~dk~~~sdp~a~v~f~~qs~~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e~yd~dr  287 (1105)
T KOG1326|consen  208 LRSYIYQARALGAPDKDDESDPDAAVEFCGQSKETEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFEVYDLDR  287 (1105)
T ss_pred             hHHHHHHHHhhcCCCcccCCCchhhhhcccccceeEeecCcCCCCccceeeccceeecCccchhhcCCCeEEEEeehhhh
Confidence            455666788888887 678999999999999 999999999999999999886321    1     12 37899999999


Q ss_pred             CCCCceeEEEEEec
Q 031204           76 FSLDDKMGDAEFYI   89 (164)
Q Consensus        76 ~~~~~~lG~~~v~l   89 (164)
                      .+.++|+|+.....
T Consensus       288 ~g~~ef~gr~~~~p  301 (1105)
T KOG1326|consen  288 SGINEFKGRKKQRP  301 (1105)
T ss_pred             hchHHhhcccccce
Confidence            99999999876543

>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks)

Probab=97.52  E-value=0.002  Score=45.65  Aligned_cols=101  Identities=17%  Similarity=0.223  Sum_probs=66.8

Q ss_pred             EEEEEEEEEeEcCCCCCCCCCCcEEEEE--ECCE-----EeeeeeeCCCCCeEecEEEEEEeC---C-CCcEEEEEEeCC
Q 031204            6 GLLRVHVLRGVNLAVRDVVSSDPYVVIK--MGKQ-----LKTRVVKNNVNPEWNEDLTLSISD---S-NLPIKLTVYDKD   74 (164)
Q Consensus         6 g~L~v~v~~a~~L~~~~~~~~dpyv~v~--~~~~-----~~T~~~~~t~~P~w~e~~~f~~~~---~-~~~l~i~v~d~~   74 (164)
                      ..+.|+|..+.++...+ ...+-|+.+.  .+++     ..|+...-..++.|||.+.|++.-   | +..|.|+||+..
T Consensus         8 ~~f~i~i~~~~~~~~~~-~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~~   86 (173)
T cd08693           8 EKFSITLHKISNLNAAE-RTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEVS   86 (173)
T ss_pred             CCEEEEEEEeccCccCC-CCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEec
Confidence            46889999999997622 3455676654  3444     456555545679999999998752   2 456999999865


Q ss_pred             CCC----------------CCceeEEEEEechhhhhhhcccccCCCCceEEEEecc
Q 031204           75 TFS----------------LDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQP  114 (164)
Q Consensus        75 ~~~----------------~~~~lG~~~v~l~~l~~~~~~~~~~~~~g~~~~~~~~  114 (164)
                      ...                .+..||.+.++|-+...       .|..|.....+-+
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~~~-------~Lr~G~~~L~lW~  135 (173)
T cd08693          87 KKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDYKG-------QLKTGDHTLYMWT  135 (173)
T ss_pred             ccccccccccccccccccCcceEEEEEeEEEEcccc-------hhhcCCeEEEecC
Confidence            321                24689999999876433       3445654444333

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty

>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks)

Probab=97.42  E-value=0.0031  Score=44.01  Aligned_cols=100  Identities=21%  Similarity=0.305  Sum_probs=66.3

Q ss_pred             cEEEEEEEEEeEcCCCCCCCCCCcEEEEEE--CCE-----EeeeeeeCCCCCeEecEEEEEEeC---C-CCcEEEEEEeC
Q 031204            5 MGLLRVHVLRGVNLAVRDVVSSDPYVVIKM--GKQ-----LKTRVVKNNVNPEWNEDLTLSISD---S-NLPIKLTVYDK   73 (164)
Q Consensus         5 ~g~L~v~v~~a~~L~~~~~~~~dpyv~v~~--~~~-----~~T~~~~~t~~P~w~e~~~f~~~~---~-~~~l~i~v~d~   73 (164)
                      ...++|+|+++.++....  .++-|+.+.+  +++     ..|+.+.. .++.|||.+.|++.-   + +..|.|+||+.
T Consensus         7 ~~~~~v~i~~~~~~~~~~--~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~   83 (158)
T cd08398           7 NSNLRIKILCATYVNVND--IDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSV   83 (158)
T ss_pred             CCCeEEEEEeeccCCCCC--cCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEE
Confidence            346889999999887643  4577777754  443     34444443 679999999998852   2 45699999996


Q ss_pred             CCCC----CCceeEEEEEechhhhhhhcccccCCCCceEEEEecc
Q 031204           74 DTFS----LDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQP  114 (164)
Q Consensus        74 ~~~~----~~~~lG~~~v~l~~l~~~~~~~~~~~~~g~~~~~~~~  114 (164)
                      ....    ....+|.+.++|-+...       .+..|.....+-+
T Consensus        84 ~~~~~~k~~~~~iG~~ni~LFd~~~-------~Lr~G~~~L~lW~  121 (158)
T cd08398          84 KGRKGAKEEHCPLAWGNINLFDYTD-------TLVSGKMALNLWP  121 (158)
T ss_pred             ecccCCCCceEEEEEEEEEEECCCC-------hhhCCCEEEEEEc
Confidence            5321    22479999999877332       3455655444444

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c

>PF15627 CEP76-C2: CEP76 C2 domain

Probab=97.30  E-value=0.0055  Score=42.52  Aligned_cols=92  Identities=15%  Similarity=0.194  Sum_probs=66.6

Q ss_pred             cEEEEEEEEEeEcCCCCCC---CCCCcEEE--EEECCE-EeeeeeeCCCCCeEecEEEEEEeCC--------------CC
Q 031204            5 MGLLRVHVLRGVNLAVRDV---VSSDPYVV--IKMGKQ-LKTRVVKNNVNPEWNEDLTLSISDS--------------NL   64 (164)
Q Consensus         5 ~g~L~v~v~~a~~L~~~~~---~~~dpyv~--v~~~~~-~~T~~~~~t~~P~w~e~~~f~~~~~--------------~~   64 (164)
                      .-.|+++|..++-+.....   +..+....  +.+.+| ++|+.+..+.+|.|+|.|-|++...              ..
T Consensus         8 ~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~~   87 (156)
T PF15627_consen    8 RRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSISD   87 (156)
T ss_pred             ceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcCCC
Confidence            3457888888774432221   34444444  445678 9999999999999999999998532              14


Q ss_pred             cEEEEEEeCCCCCCCceeEEEEEechhhhhhh
Q 031204           65 PIKLTVYDKDTFSLDDKMGDAEFYITPFLEAL   96 (164)
Q Consensus        65 ~l~i~v~d~~~~~~~~~lG~~~v~l~~l~~~~   96 (164)
                      ++++.|...+..+...++|.-.++...+....
T Consensus        88 pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~  119 (156)
T PF15627_consen   88 PIHIVLIRTDPSGETTLVGSHFLDWRKVLCSG  119 (156)
T ss_pred             ceEEEEEEecCCCceEeeeeceehHHHHhccC
Confidence            68888888887766689999888887776654

>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks)

Probab=97.26  E-value=0.0033  Score=43.73  Aligned_cols=87  Identities=21%  Similarity=0.262  Sum_probs=59.6

Q ss_pred             EEEEEEEEEeEcCCCCCCCCCCcEEEEEE--CCE-----EeeeeeeCCCCCeEecEEEEEEeC---C-CCcEEEEEEeCC
Q 031204            6 GLLRVHVLRGVNLAVRDVVSSDPYVVIKM--GKQ-----LKTRVVKNNVNPEWNEDLTLSISD---S-NLPIKLTVYDKD   74 (164)
Q Consensus         6 g~L~v~v~~a~~L~~~~~~~~dpyv~v~~--~~~-----~~T~~~~~t~~P~w~e~~~f~~~~---~-~~~l~i~v~d~~   74 (164)
                      ..++|.+....+....+....+-|+.+.+  ++.     ..|.......++.|||.+.|++.-   | +..|.|++|+..
T Consensus         8 ~~~~i~i~~~~~~~~~~~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~   87 (156)
T cd08380           8 FNLRIKIHGITNINLLDSEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVS   87 (156)
T ss_pred             CCeEEEEEeeccccccCCCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEe
Confidence            45778888888776522334566666644  443     344444334689999999998742   2 456999999976


Q ss_pred             CCC--CCceeEEEEEechhh
Q 031204           75 TFS--LDDKMGDAEFYITPF   92 (164)
Q Consensus        75 ~~~--~~~~lG~~~v~l~~l   92 (164)
                      ..+  .+..||.+.+++-+.
T Consensus        88 ~~~~~~~~~iG~~~~~lFd~  107 (156)
T cd08380          88 EPGSKKEVPLGWVNVPLFDY  107 (156)
T ss_pred             cCCCCcceEEEEEeEEeEcc
Confidence            543  467999999999764

C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]

Probab=97.16  E-value=0.0011  Score=56.85  Aligned_cols=86  Identities=21%  Similarity=0.373  Sum_probs=66.7

Q ss_pred             cEEEEEEEEEeEcCCCCCCCCCCcEEEEEECC-------E-EeeeeeeC-CCCCeEec-EEEEEE-eCCC-CcEEEEEEe
Q 031204            5 MGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGK-------Q-LKTRVVKN-NVNPEWNE-DLTLSI-SDSN-LPIKLTVYD   72 (164)
Q Consensus         5 ~g~L~v~v~~a~~L~~~~~~~~dpyv~v~~~~-------~-~~T~~~~~-t~~P~w~e-~~~f~~-~~~~-~~l~i~v~d   72 (164)
                      .+++.|+|+++.-|..+.   ...||.|.+-+       . ++|++... +.||+|+| .|.|.- --++ ..|.|.||+
T Consensus       702 A~t~sV~VISgqFLSdrk---vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavye  778 (1189)
T KOG1265|consen  702 AATLSVTVISGQFLSDRK---VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVYE  778 (1189)
T ss_pred             EeeEEEEEEeeeeccccc---cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeeec
Confidence            467999999999998664   45899999753       1 78888776 89999995 477763 3344 569999999


Q ss_pred             CCCCCCCceeEEEEEechhhhhhhc
Q 031204           73 KDTFSLDDKMGDAEFYITPFLEALK   97 (164)
Q Consensus        73 ~~~~~~~~~lG~~~v~l~~l~~~~~   97 (164)
                      .+    ..+||+-.++++.+..+..
T Consensus       779 Eg----gK~ig~RIlpvd~l~~GYr  799 (1189)
T KOG1265|consen  779 EG----GKFIGQRILPVDGLNAGYR  799 (1189)
T ss_pred             cC----CceeeeeccchhcccCcce
Confidence            75    3699999999988877654

>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins

Probab=97.14  E-value=0.0058  Score=38.41  Aligned_cols=64  Identities=17%  Similarity=0.236  Sum_probs=49.4

Q ss_pred             CCCCcEEEEEECCE--EeeeeeeCCCCCeEecEEEEEEeCCCCcEEEEEEeCCCCCCCceeEEEEEechhh
Q 031204           24 VSSDPYVVIKMGKQ--LKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSLDDKMGDAEFYITPF   92 (164)
Q Consensus        24 ~~~dpyv~v~~~~~--~~T~~~~~t~~P~w~e~~~f~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~l~~l   92 (164)
                      |..+..+++.+++.  .+|.-... .+..|++.|.|++. ..+.|.|.||-+|-   ..+-|-..+.|++.
T Consensus         7 ~~~eV~avLklDn~~VgqT~Wk~~-s~q~WDQ~Fti~Ld-RsRELEI~VywrD~---RslCav~~lrLEd~   72 (98)
T cd08687           7 GCSEVSAVLKLDNTVVGQTQWKPK-SNQAWDQSFTLELE-RSRELEIAVYWRDW---RSLCAVKFLKLEDE   72 (98)
T ss_pred             cccceEEEEEEcCeEEeecccccc-ccccccceeEEEee-cccEEEEEEEEecc---hhhhhheeeEhhhh
Confidence            45788899999986  77765444 47899999999997 45679999998863   45677777888774

PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct

>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]

Probab=97.10  E-value=0.00088  Score=51.23  Aligned_cols=79  Identities=20%  Similarity=0.273  Sum_probs=60.9

Q ss_pred             cccEEEEEEEEEeEcCCCCC---CCCCCcEEEEEECCE--EeeeeeeCCCCCeEecEEEEEEeCCCCcEEEEEEeCCCCC
Q 031204            3 NLMGLLRVHVLRGVNLAVRD---VVSSDPYVVIKMGKQ--LKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFS   77 (164)
Q Consensus         3 ~~~g~L~v~v~~a~~L~~~~---~~~~dpyv~v~~~~~--~~T~~~~~t~~P~w~e~~~f~~~~~~~~l~i~v~d~~~~~   77 (164)
                      ...|.|.+++..+++|.-..   +-.-+-||++..+.+  .+|.+......=.|.|+|...+.+ ...+.+-||.|+.-.
T Consensus        48 s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~-~~vl~~lvySW~pq~  126 (442)
T KOG1452|consen   48 SSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVN-IEVLHYLVYSWPPQR  126 (442)
T ss_pred             cccceEEEEEecccccccChhccCceeeeeeeeeecccCccccccccCCCCccchhhceeeccc-ceeeeEEEeecCchh
Confidence            35689999999999998654   336789999999988  777776666667888999888763 345888999988766


Q ss_pred             CCcee
Q 031204           78 LDDKM   82 (164)
Q Consensus        78 ~~~~l   82 (164)
                      ++.+.
T Consensus       127 RHKLC  131 (442)
T KOG1452|consen  127 RHKLC  131 (442)
T ss_pred             hcccc
Confidence            66543

>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks)

Probab=96.99  E-value=0.015  Score=41.46  Aligned_cols=103  Identities=16%  Similarity=0.095  Sum_probs=63.3

Q ss_pred             EEEEEEEEEeEcCCCCCCCCCCcEEEEE--ECCE----EeeeeeeCCCCCeEecEEEEEEeC----CCCcEEEEEEeCCC
Q 031204            6 GLLRVHVLRGVNLAVRDVVSSDPYVVIK--MGKQ----LKTRVVKNNVNPEWNEDLTLSISD----SNLPIKLTVYDKDT   75 (164)
Q Consensus         6 g~L~v~v~~a~~L~~~~~~~~dpyv~v~--~~~~----~~T~~~~~t~~P~w~e~~~f~~~~----~~~~l~i~v~d~~~   75 (164)
                      ..++|+|..+.++.........-|+.+.  .+++    .+|....-+.+|.|||.+.|++.-    ....|.|+||+...
T Consensus        10 ~~friki~~~~~~~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~~   89 (178)
T cd08399          10 RKFRVKILGIDIPVLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGKA   89 (178)
T ss_pred             CCEEEEEEeecccCcCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEec
Confidence            3577888888643222222333555553  3444    456655556789999999999853    24569999998532


Q ss_pred             CC----------------CCceeEEEEEechhhhhhhcccccCCCCceEEEEeccC
Q 031204           76 FS----------------LDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPS  115 (164)
Q Consensus        76 ~~----------------~~~~lG~~~v~l~~l~~~~~~~~~~~~~g~~~~~~~~~  115 (164)
                      ..                .+..||.+.+.|-+...       .|+.|.....+-|.
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD~~~-------~Lr~G~~~L~~W~~  138 (178)
T cd08399          90 PALSSKKSAESPSSESKGKHQLLYYVNLLLIDHRF-------LLRTGEYVLHMWQI  138 (178)
T ss_pred             CcccccccccccccccccccceEEEEEEEEEcCCC-------ceecCCEEEEEecC
Confidence            11                25688888888866332       45566665555553

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir

>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks)

Probab=96.95  E-value=0.0041  Score=43.47  Aligned_cols=69  Identities=22%  Similarity=0.279  Sum_probs=51.6

Q ss_pred             CCCCcEEEEEE--CCE-----EeeeeeeCCCCCeEecEEEEEEeC----CCCcEEEEEEeCCCCCCCceeEEEEEechhh
Q 031204           24 VSSDPYVVIKM--GKQ-----LKTRVVKNNVNPEWNEDLTLSISD----SNLPIKLTVYDKDTFSLDDKMGDAEFYITPF   92 (164)
Q Consensus        24 ~~~dpyv~v~~--~~~-----~~T~~~~~t~~P~w~e~~~f~~~~----~~~~l~i~v~d~~~~~~~~~lG~~~v~l~~l   92 (164)
                      ..++-|+.+.+  ++.     .+|....-+..+.|||...|++.-    .+..|.|+||+....+....+|.+.+++-+-
T Consensus        28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~  107 (159)
T cd08397          28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK  107 (159)
T ss_pred             CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence            35677888765  333     466655556779999999999853    2456999999987655677999999998764

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty

>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=96.92  E-value=0.017  Score=40.84  Aligned_cols=88  Identities=20%  Similarity=0.245  Sum_probs=61.2

Q ss_pred             cEEEEEEEEEeEcCCCCC-CCCCCcEEEEEE--CCE-----Eeeeeee--C--CCCCeEecEEEEEEeC---C-CCcEEE
Q 031204            5 MGLLRVHVLRGVNLAVRD-VVSSDPYVVIKM--GKQ-----LKTRVVK--N--NVNPEWNEDLTLSISD---S-NLPIKL   68 (164)
Q Consensus         5 ~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~--~~~-----~~T~~~~--~--t~~P~w~e~~~f~~~~---~-~~~l~i   68 (164)
                      ...+.|+|.++.+++..- ....+-|+.+.+  +++     ..|+...  +  ...+.|||.+.|++.-   | +..|.|
T Consensus         7 ~~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~i   86 (171)
T cd04012           7 TDLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVL   86 (171)
T ss_pred             cccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEE
Confidence            456889999999998654 335677777754  444     3444322  1  2357899999998852   2 356999


Q ss_pred             EEEeCCCCC---------CCceeEEEEEechhh
Q 031204           69 TVYDKDTFS---------LDDKMGDAEFYITPF   92 (164)
Q Consensus        69 ~v~d~~~~~---------~~~~lG~~~v~l~~l   92 (164)
                      ++|+.....         .+..||.+.++|-+.
T Consensus        87 tl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~  119 (171)
T cd04012          87 TLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDF  119 (171)
T ss_pred             EEEEEecCCccccccccccceEEEEEeEeeEcc
Confidence            999966543         356999999998774

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c

>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length

Probab=96.79  E-value=0.039  Score=43.27  Aligned_cols=83  Identities=22%  Similarity=0.350  Sum_probs=68.6

Q ss_pred             EEEEEEEeEcCCCCCCCCCCcEEEEEECCE-EeeeeeeCCCCCeEecEEEEEEeC--------CCCcEEEEEEeCC-CCC
Q 031204            8 LRVHVLRGVNLAVRDVVSSDPYVVIKMGKQ-LKTRVVKNNVNPEWNEDLTLSISD--------SNLPIKLTVYDKD-TFS   77 (164)
Q Consensus         8 L~v~v~~a~~L~~~~~~~~dpyv~v~~~~~-~~T~~~~~t~~P~w~e~~~f~~~~--------~~~~l~i~v~d~~-~~~   77 (164)
                      +.|.|++|+|++...  ...-.+..++++. ..|..+..+..|.||..+..++..        .+.+|++++|..+ ..+
T Consensus         2 ivl~i~egr~F~~~~--~~~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~~   79 (340)
T PF12416_consen    2 IVLSILEGRNFPQRP--RHPIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGSTG   79 (340)
T ss_pred             EEEEEecccCCCCCC--CccEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCCCC
Confidence            678999999998652  4456777888888 999988889999999999998842        2356999999988 556


Q ss_pred             CCceeEEEEEechhh
Q 031204           78 LDDKMGDAEFYITPF   92 (164)
Q Consensus        78 ~~~~lG~~~v~l~~l   92 (164)
                      ..+.+|.+-++|...
T Consensus        80 ~re~iGyv~LdLRsa   94 (340)
T PF12416_consen   80 KRESIGYVVLDLRSA   94 (340)
T ss_pred             cceeccEEEEEcccc
Confidence            788999999999877

>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2

Probab=96.41  E-value=0.029  Score=38.36  Aligned_cols=54  Identities=22%  Similarity=0.329  Sum_probs=39.7

Q ss_pred             eeeeeeCC-CCCeEecEEEEEEeC---C-CCcEEEEEEeCCCCCCC----ceeEEEEEechhh
Q 031204           39 KTRVVKNN-VNPEWNEDLTLSISD---S-NLPIKLTVYDKDTFSLD----DKMGDAEFYITPF   92 (164)
Q Consensus        39 ~T~~~~~t-~~P~w~e~~~f~~~~---~-~~~l~i~v~d~~~~~~~----~~lG~~~v~l~~l   92 (164)
                      .|....-+ .++.|+|.+.|++.-   | +..|.|+||........    ..||.+.+++-+.
T Consensus        23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~   85 (142)
T PF00792_consen   23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDY   85 (142)
T ss_dssp             E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-T
T ss_pred             eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECC
Confidence            56666655 799999999999852   3 45699999997765444    6999999999775

7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....

>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []

Probab=96.37  E-value=0.17  Score=34.30  Aligned_cols=89  Identities=17%  Similarity=0.286  Sum_probs=60.1

Q ss_pred             ccEEEEEEEEEeEcCCCCCCCCCCcEEEEEECCE----EeeeeeeC-CCCCeEecEEEEEEe---CC------CCcEEEE
Q 031204            4 LMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQ----LKTRVVKN-NVNPEWNEDLTLSIS---DS------NLPIKLT   69 (164)
Q Consensus         4 ~~g~L~v~v~~a~~L~~~~~~~~dpyv~v~~~~~----~~T~~~~~-t~~P~w~e~~~f~~~---~~------~~~l~i~   69 (164)
                      ..-.+.+.|.+..+++.   .....|+.+..+..    .+|..... ...-.|++.|.+.+.   +.      ...+.|.
T Consensus         5 ~kf~~~l~i~~l~~~p~---~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~   81 (143)
T PF10358_consen    5 VKFQFDLTIHELENLPS---SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFS   81 (143)
T ss_pred             eeEEEEEEEEEeECcCC---CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEE
Confidence            34467889999998875   23445666666543    34443333 455899999999874   11      1348899


Q ss_pred             EEeCCCCCCCceeEEEEEechhhhhh
Q 031204           70 VYDKDTFSLDDKMGDAEFYITPFLEA   95 (164)
Q Consensus        70 v~d~~~~~~~~~lG~~~v~l~~l~~~   95 (164)
                      |+....-++...+|.+.++|++....
T Consensus        82 v~~~~~~~~k~~lG~~~inLaey~~~  107 (143)
T PF10358_consen   82 VFEVDGSGKKKVLGKVSINLAEYANE  107 (143)
T ss_pred             EEEecCCCccceEEEEEEEHHHhhCc
Confidence            99875333336999999999998775

Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).

>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain

Probab=96.00  E-value=0.33  Score=34.19  Aligned_cols=69  Identities=17%  Similarity=0.185  Sum_probs=53.8

Q ss_pred             CCCcEEEEEECCE--EeeeeeeCC--CCCeEecEEEEEEeCCCCcEEEEEEeCCCCCCCceeEEEEEechhhhh
Q 031204           25 SSDPYVVIKMGKQ--LKTRVVKNN--VNPEWNEDLTLSISDSNLPIKLTVYDKDTFSLDDKMGDAEFYITPFLE   94 (164)
Q Consensus        25 ~~dpyv~v~~~~~--~~T~~~~~t--~~P~w~e~~~f~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~l~~l~~   94 (164)
                      ...-|+++.++++  .+|+...-+  ..-.|++.|.+.+...-..|.++||.... ..+..|+.+.+++-....
T Consensus        36 ~~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~Pesi~l~i~E~~~-~~~~~la~v~vpvP~~~~  108 (168)
T PF15625_consen   36 KTRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRWPESIKLEIYEKSG-LSDRLLAEVFVPVPGSTV  108 (168)
T ss_pred             heeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecCCCEEEEEEEEccC-ccceEEEEEEeeCCCCcc
Confidence            4567999999987  777665543  33667899999987656679999999987 488999999999865443

>KOG1327 consensus Copine [Signal transduction mechanisms]

Probab=95.42  E-value=0.074  Score=43.80  Aligned_cols=61  Identities=25%  Similarity=0.365  Sum_probs=50.3

Q ss_pred             EeeeeeeCCCCCeEecEEEEEEeC-CCCcEEEEEEeCCCC----CCCceeEEEEEechhhhhhhcc
Q 031204           38 LKTRVVKNNVNPEWNEDLTLSISD-SNLPIKLTVYDKDTF----SLDDKMGDAEFYITPFLEALKM   98 (164)
Q Consensus        38 ~~T~~~~~t~~P~w~e~~~f~~~~-~~~~l~i~v~d~~~~----~~~~~lG~~~v~l~~l~~~~~~   98 (164)
                      .+|.++.+.+||.|.+.|.+.... ..+.+.+++++.+..    ..++|+|++...+..+......
T Consensus        43 ~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~  108 (529)
T KOG1327|consen   43 GRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGL  108 (529)
T ss_pred             cceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhh
Confidence            689999999999999998887653 356799999997643    4678999999999998876554

>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain

Probab=94.92  E-value=0.27  Score=31.45  Aligned_cols=67  Identities=24%  Similarity=0.292  Sum_probs=43.5

Q ss_pred             EEEEEEEeEcCCCCCCC-CCCcEEEEEE--CCE-----EeeeeeeCCCCCeEecEEEEEEeC---C-CCcEEEEEEeCC
Q 031204            8 LRVHVLRGVNLAVRDVV-SSDPYVVIKM--GKQ-----LKTRVVKNNVNPEWNEDLTLSISD---S-NLPIKLTVYDKD   74 (164)
Q Consensus         8 L~v~v~~a~~L~~~~~~-~~dpyv~v~~--~~~-----~~T~~~~~t~~P~w~e~~~f~~~~---~-~~~l~i~v~d~~   74 (164)
                      +.+.+....+....... ..+-|+.+.+  ++.     ..|....-...+.|||...|++.-   | +..|.|++|+..
T Consensus        13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~   91 (100)
T smart00142       13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVK   91 (100)
T ss_pred             eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence            55666666665544322 2477888754  444     455555445669999999998752   2 456999999854

Outlier of C2 family.

>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function

Probab=94.66  E-value=0.31  Score=31.77  Aligned_cols=67  Identities=13%  Similarity=0.167  Sum_probs=37.2

Q ss_pred             EEEEEECCE--EeeeeeeCCCCCeEecEEEEEEeCC--------CCcEEEEEEeCCCCCCCceeEEEEEechhhhhhhc
Q 031204           29 YVVIKMGKQ--LKTRVVKNNVNPEWNEDLTLSISDS--------NLPIKLTVYDKDTFSLDDKMGDAEFYITPFLEALK   97 (164)
Q Consensus        29 yv~v~~~~~--~~T~~~~~t~~P~w~e~~~f~~~~~--------~~~l~i~v~d~~~~~~~~~lG~~~v~l~~l~~~~~   97 (164)
                      ||.+.+-.-  +.|.++. +.+|.+|-+-.|.+...        ...+.++++..-.. ....+|.+++++..+.....
T Consensus         2 Fct~dFydfEtq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g~-d~~tla~~~i~l~~ll~~~~   78 (107)
T PF11618_consen    2 FCTYDFYDFETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALGS-DFETLAAGQISLRPLLESNG   78 (107)
T ss_dssp             EEEE-STT---EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-SS--EEEEEEEEE--SHHHH--S
T ss_pred             EEEEEeeceeeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeeccC-CeEEEEEEEeechhhhcCCC
Confidence            566665544  7777776 77999999988888632        25699999987633 46799999999999986543

It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.

>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins

Probab=94.64  E-value=0.95  Score=32.57  Aligned_cols=53  Identities=19%  Similarity=0.270  Sum_probs=40.3

Q ss_pred             EeeeeeeCCCCCeEecEEEEEEeC---CCCcEEEEEEeCCCCCC--CceeEEEEEech
Q 031204           38 LKTRVVKNNVNPEWNEDLTLSISD---SNLPIKLTVYDKDTFSL--DDKMGDAEFYIT   90 (164)
Q Consensus        38 ~~T~~~~~t~~P~w~e~~~f~~~~---~~~~l~i~v~d~~~~~~--~~~lG~~~v~l~   90 (164)
                      ++|-+.....+|.|+|++.+.+..   .+.-|.|++++.....+  ...+|-+.++|-
T Consensus        55 ~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~  112 (189)
T cd08695          55 YRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLM  112 (189)
T ss_pred             EEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeec
Confidence            889999989999999999999863   23458888888554321  257888888873

Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int

>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins

Probab=94.57  E-value=0.58  Score=33.82  Aligned_cols=53  Identities=11%  Similarity=0.204  Sum_probs=40.0

Q ss_pred             EeeeeeeCCCCCeEecEEEEEEeC---CCCcEEEEEEeCCCCC-C---CceeEEEEEech
Q 031204           38 LKTRVVKNNVNPEWNEDLTLSISD---SNLPIKLTVYDKDTFS-L---DDKMGDAEFYIT   90 (164)
Q Consensus        38 ~~T~~~~~t~~P~w~e~~~f~~~~---~~~~l~i~v~d~~~~~-~---~~~lG~~~v~l~   90 (164)
                      ++|-+.....+|.|+|++.+.+..   .+.-|.|++++..... +   ...+|-+.++|-
T Consensus        55 ~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~  114 (196)
T cd08694          55 YKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM  114 (196)
T ss_pred             EEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence            888888889999999999998853   2445899998865321 2   247888888874

Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A

Probab=94.07  E-value=0.25  Score=35.20  Aligned_cols=54  Identities=17%  Similarity=0.289  Sum_probs=33.5

Q ss_pred             EeeeeeeCCCCCeEecEEEEEEeCC---CCcEEEEEEeCCCCCC---CceeEEEEEechh
Q 031204           38 LKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTVYDKDTFSL---DDKMGDAEFYITP   91 (164)
Q Consensus        38 ~~T~~~~~t~~P~w~e~~~f~~~~~---~~~l~i~v~d~~~~~~---~~~lG~~~v~l~~   91 (164)
                      +.|.+...+.+|.|+|+|.+.+...   +.-|.|++++...-.+   ...+|.+.++|-+
T Consensus        61 ~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~  120 (184)
T PF14429_consen   61 YYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD  120 (184)
T ss_dssp             EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred             EEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence            7788888889999999999998643   3448999999654322   2699999999976

>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]

Probab=91.20  E-value=0.3  Score=42.59  Aligned_cols=70  Identities=11%  Similarity=0.230  Sum_probs=59.9

Q ss_pred             CCcEEEEEECCE--EeeeeeeCC-CCCeEecEEEEEEeCCCCcEEEEEEeCCCCCCCceeEEEEEechhhhhh
Q 031204           26 SDPYVVIKMGKQ--LKTRVVKNN-VNPEWNEDLTLSISDSNLPIKLTVYDKDTFSLDDKMGDAEFYITPFLEA   95 (164)
Q Consensus        26 ~dpyv~v~~~~~--~~T~~~~~t-~~P~w~e~~~f~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~l~~l~~~   95 (164)
                      .++|+.+.+...  .+|....+. .+|.|.+.|...+......+.+.+-+.+..+....+|.+.++...+..+
T Consensus       138 ~e~Ylt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~~g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~~  210 (887)
T KOG1329|consen  138 LENYLTVVLHKARYRRTHVIYEFLENSRWSFSFDIGFAHKAGYVIFRVKGARVPGWSKRWGRVKISFLQYCSG  210 (887)
T ss_pred             ccchheeeechhhhhchhhhhcccccchhhhhccccccccccEEEEeecCCccccceeEEEEeccchhhhhcc
Confidence            488999998876  888888776 7899999998888877788999999988887678999999999888775

>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species

Probab=90.40  E-value=4.7  Score=28.32  Aligned_cols=134  Identities=18%  Similarity=0.181  Sum_probs=76.9

Q ss_pred             EEEEEEeEcCCCCCCCCCCcEEEEEEC--C----------EEeeeeeeC-----CCCCeEecEEEEEEeC--CC--CcEE
Q 031204            9 RVHVLRGVNLAVRDVVSSDPYVVIKMG--K----------QLKTRVVKN-----NVNPEWNEDLTLSISD--SN--LPIK   67 (164)
Q Consensus         9 ~v~v~~a~~L~~~~~~~~dpyv~v~~~--~----------~~~T~~~~~-----t~~P~w~e~~~f~~~~--~~--~~l~   67 (164)
                      .=.|..|.+..     ..+-||+..+.  .          ...|.+...     ...-.||.-|.+.+..  +.  -.|.
T Consensus         5 ~G~I~~a~~f~-----~~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gwP~L~   79 (168)
T PF07162_consen    5 IGEIESAEGFE-----EDNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGWPQLV   79 (168)
T ss_pred             EEEEEEEECCC-----CCCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCCCceEE
Confidence            34677888754     45779988763  1          144555443     2346788888777753  22  2499


Q ss_pred             EEEEeCCCCCCCceeEEEEEechhhhhhhcccccCCCCceEEEEeccCCCcccc-ccceeEeeCCeEE-------EEEeE
Q 031204           68 LTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLA-EESHIVWTDGKLV-------QNLFL  139 (164)
Q Consensus        68 i~v~d~~~~~~~~~lG~~~v~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~g~~~-------~~~~~  139 (164)
                      |+||..|..+++...|-..+.+-.-.....         ..+..|.|....... -.+.+.-..-++.       .+..+
T Consensus        80 l~V~~~D~~gr~~~~GYG~~~lP~~pG~h~---------~~v~~wrP~~~s~~~~l~~~f~G~~pel~d~~~~~~~~~R~  150 (168)
T PF07162_consen   80 LQVYSLDSWGRDRVEGYGFCHLPTQPGRHE---------VEVPTWRPVSGSIRQELRSFFVGGRPELVDPDFIASGESRF  150 (168)
T ss_pred             EEEEEEcccCCeEEeEEeEEEeCCCCceEE---------EEEEEEeecCCCHHHHhhhheecCCceEcCcchhcCccccc
Confidence            999999999999999887777633211111         235566663333221 1111111111111       23334


Q ss_pred             EecccceeeEEEEEEEE
Q 031204          140 RLRNVEVGEVKIQLEWI  156 (164)
Q Consensus       140 ~l~~~~~G~l~l~l~~~  156 (164)
                      .++....|.|+|+|.-+
T Consensus       151 ~l~t~s~G~V~v~l~vi  167 (168)
T PF07162_consen  151 GLRTESSGSVKVRLNVI  167 (168)
T ss_pred             CcEEEeeeEEEEEEEEe
Confidence            56666789999998754

Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.

>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins

Probab=90.26  E-value=1.4  Score=31.24  Aligned_cols=53  Identities=15%  Similarity=0.270  Sum_probs=38.3

Q ss_pred             EeeeeeeCCCCCeEecEEEEEEeC---CCCcEEEEEEeCCCC-----CCCceeEEEEEechh
Q 031204           38 LKTRVVKNNVNPEWNEDLTLSISD---SNLPIKLTVYDKDTF-----SLDDKMGDAEFYITP   91 (164)
Q Consensus        38 ~~T~~~~~t~~P~w~e~~~f~~~~---~~~~l~i~v~d~~~~-----~~~~~lG~~~v~l~~   91 (164)
                      ++|-+..+ .+|.|+|++.+.+..   +..-|.|++++...-     .....+|-+.++|-+
T Consensus        55 ~~sv~~~~-k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~  115 (178)
T cd08679          55 YTSVVYYH-KNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD  115 (178)
T ss_pred             EEEEEEcC-CCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence            44444444 899999999998853   234599999996532     235689999999865

Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo

>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=89.92  E-value=0.13  Score=43.57  Aligned_cols=68  Identities=10%  Similarity=0.073  Sum_probs=46.9

Q ss_pred             CCCcEEEEEECCE--EeeeeeeCCCCCeEecEEEEEEeCCCCcEEEEEEeCCCCCCCceeEEEEEechhhh
Q 031204           25 SSDPYVVIKMGKQ--LKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSLDDKMGDAEFYITPFL   93 (164)
Q Consensus        25 ~~dpyv~v~~~~~--~~T~~~~~t~~P~w~e~~~f~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~l~~l~   93 (164)
                      ..+||+.+.+.-.  ..+.+...+..|.|+++|.+++. .+..+.|.|+.......+.+...+++..+++.
T Consensus        27 al~~y~~v~vk~~~~~~~~~~~~~~~~~~~~~F~~~v~-~~~~~~i~v~~~~~~~~~~~~a~~~~~~e~~k   96 (694)
T KOG0694|consen   27 ALQPYLAVELKVKQGAENMTKVELRIPELRETFHVEVV-AGGAKNIIVLLKSPDPKALSEAQLSLQEESQK   96 (694)
T ss_pred             hhhhhheeccceeecccccCCCCCCCchhhhheeeeee-cCCceEEEEEecCCcchhhHHHhHHHHHHHHH
Confidence            4588999988754  55556677899999999999976 45568889988765444444444444443333

>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins

Probab=89.74  E-value=1.8  Score=30.88  Aligned_cols=54  Identities=15%  Similarity=0.291  Sum_probs=40.6

Q ss_pred             EeeeeeeCCCCCeEecEEEEEEeCC---CCcEEEEEEeCCCCC------CCceeEEEEEechh
Q 031204           38 LKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTVYDKDTFS------LDDKMGDAEFYITP   91 (164)
Q Consensus        38 ~~T~~~~~t~~P~w~e~~~f~~~~~---~~~l~i~v~d~~~~~------~~~~lG~~~v~l~~   91 (164)
                      +.|.+...+.+|.|+|++.+.+...   ..-|.|+.++.+.-.      ....+|-+.++|-.
T Consensus        56 ~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~  118 (179)
T cd08696          56 AYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLR  118 (179)
T ss_pred             EEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeeec
Confidence            8888999999999999999888532   345889999844321      23579999998854

Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand

>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins

Probab=88.73  E-value=2.7  Score=30.15  Aligned_cols=54  Identities=17%  Similarity=0.312  Sum_probs=40.8

Q ss_pred             EeeeeeeCCCCCeEecEEEEEEeC---CCCcEEEEEEeCCCC--C-------CCceeEEEEEechh
Q 031204           38 LKTRVVKNNVNPEWNEDLTLSISD---SNLPIKLTVYDKDTF--S-------LDDKMGDAEFYITP   91 (164)
Q Consensus        38 ~~T~~~~~t~~P~w~e~~~f~~~~---~~~~l~i~v~d~~~~--~-------~~~~lG~~~v~l~~   91 (164)
                      +.|.+...+.+|.|.|++.+.+..   ...-|.|+.++...-  .       ....+|-+.++|-.
T Consensus        58 ~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~  123 (185)
T cd08697          58 AYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK  123 (185)
T ss_pred             EEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence            888899999999999999988852   234589999986521  1       23578999999865

Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande

>PTZ00447 apical membrane antigen 1-like protein; Provisional

Probab=88.16  E-value=12  Score=29.79  Aligned_cols=66  Identities=11%  Similarity=0.262  Sum_probs=46.9

Q ss_pred             CCCcEEEEEECCE-EeeeeeeCCCCCe--EecEEEEEEeCCCCcEEEEEEeCCCCCCCceeEEEEEechh
Q 031204           25 SSDPYVVIKMGKQ-LKTRVVKNNVNPE--WNEDLTLSISDSNLPIKLTVYDKDTFSLDDKMGDAEFYITP   91 (164)
Q Consensus        25 ~~dpyv~v~~~~~-~~T~~~~~t~~P~--w~e~~~f~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~l~~   91 (164)
                      ....|+.+..+.. .+|..+.-+..-.  -.++....+..-+.+|++.+|-.... +...||.+.+.+..
T Consensus        73 ~khiyIef~~Gr~d~TT~~IpTsKK~RI~IqqRV~IkIRQcDnTLkI~lfKKkLv-kk~hIgdI~InIn~  141 (508)
T PTZ00447         73 YKHIYIIFSTDKYDFTTDEIPTNKKNRIHIDQRVDIKIRQCDETLRVDLFTTKLT-KKVHIGQIKIDINA  141 (508)
T ss_pred             ceeEEEEEEcCceEEEccccccCcCceEEEeeeeeeeeeecCceEEEEEEecccc-ceeEEEEEEecccH
Confidence            3467888888877 7775554433322  33555666665667899999999877 77899999999875

>PF06219 DUF1005: Protein of unknown function (DUF1005); InterPro: IPR010410 This is a family of plant proteins with undetermined function

Probab=82.20  E-value=26  Score=28.55  Aligned_cols=66  Identities=15%  Similarity=0.196  Sum_probs=39.1

Q ss_pred             CCCcEEEEEECCE-EeeeeeeC--CCCCeE---e-cEEEEEEe--------CC------CCcEEEEEEeCCC-----C-C
Q 031204           25 SSDPYVVIKMGKQ-LKTRVVKN--NVNPEW---N-EDLTLSIS--------DS------NLPIKLTVYDKDT-----F-S   77 (164)
Q Consensus        25 ~~dpyv~v~~~~~-~~T~~~~~--t~~P~w---~-e~~~f~~~--------~~------~~~l~i~v~d~~~-----~-~   77 (164)
                      .+.+||+|++.+- .+|..+.-  ..++.-   + ---.|.+.        .+      ...|+|.||.-..     + .
T Consensus        35 sspCfC~IrL~~fP~Qta~vPLi~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~i~VY~Gr~G~tCGv~~  114 (460)
T PF06219_consen   35 SSPCFCEIRLKGFPSQTAPVPLISSSEPEPPDSHSLAASFHLDKSDLRRLLAKPCFYSPRPCLEISVYTGRRGSTCGVGN  114 (460)
T ss_pred             CCCeEEEEecCCCCccceeeeeccCCCCCCCCcCCcceEEecCHHHHHHHhCCCccccCCceEEEEEEECCCCCcccccc
Confidence            4578999999886 55554432  111111   1 11234332        11      1459999998332     2 3


Q ss_pred             CCceeEEEEEech
Q 031204           78 LDDKMGDAEFYIT   90 (164)
Q Consensus        78 ~~~~lG~~~v~l~   90 (164)
                      +..+||.+.++++
T Consensus       115 ~~klLG~v~vpld  127 (460)
T PF06219_consen  115 SGKLLGKVRVPLD  127 (460)
T ss_pred             cceEEEEEEEEec
Confidence            5679999999986

>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]

Probab=81.71  E-value=11  Score=33.46  Aligned_cols=86  Identities=16%  Similarity=0.187  Sum_probs=51.4

Q ss_pred             EEEEEEEEeEcCCCCCCCCCCcEEEEEEC----CE-----EeeeeeeCCCCCeEecEEEEEEeC---C-CCcEEEEEEeC
Q 031204            7 LLRVHVLRGVNLAVRDVVSSDPYVVIKMG----KQ-----LKTRVVKNNVNPEWNEDLTLSISD---S-NLPIKLTVYDK   73 (164)
Q Consensus         7 ~L~v~v~~a~~L~~~~~~~~dpyv~v~~~----~~-----~~T~~~~~t~~P~w~e~~~f~~~~---~-~~~l~i~v~d~   73 (164)
                      -+.|+++.+.++...  ...|-++.+..+    .+     ..|.-+....+|.||+.+.|.+.-   | ...|.|.||.-
T Consensus       344 ~frI~l~~is~~n~~--~t~~~kV~V~~~lyhG~e~Lc~~~sTs~v~~~~~~~Wn~~leFDI~i~DLPr~ArLc~~i~~v  421 (1076)
T KOG0904|consen  344 PFRIKLVGISKVNLP--ETVDLKVFVEAGLYHGTEVLCKTRSTSEVPGCSFPLWNEWLEFDIYIKDLPRMARLCLAIYAV  421 (1076)
T ss_pred             ceEEEEeeccccCCC--cccceEEEEEEEEEECCeehhcccccCCCCCccchhccceeEeeeecCCCChhhhheeeeeEe
Confidence            466777776654322  244566666543    33     344444447789999999998852   2 34588888864


Q ss_pred             C----------------CCCCCceeEEEEEechhhhh
Q 031204           74 D----------------TFSLDDKMGDAEFYITPFLE   94 (164)
Q Consensus        74 ~----------------~~~~~~~lG~~~v~l~~l~~   94 (164)
                      .                .-+.+..+|.+.+.+-+...
T Consensus       422 ~~~~~s~~~s~~~~~kk~k~~~~plaWvN~~lfD~kd  458 (1076)
T KOG0904|consen  422 KAKAKSKKNSAESTKKKSKKEHCPLAWVNLMLFDHKD  458 (1076)
T ss_pred             echhccccccchhhhhccccccCceEEEeeeeeechh
Confidence            1                11234467777776655443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	164
3jzy_A	510	Crystal Structure Of Human Intersectin 2 C2 Domain		9e-09
2nsq_A	155	Crystal Structure Of The C2 Domain Of The Human E3		3e-08
2ep6_A	133	Solution Structure Of The Second C2 Domain From Hum		5e-08
3b7y_A	153	Crystal Structure Of The C2 Domain Of The E3 Ubiqui		2e-07
2cm6_A	166	Crystal Structure Of The C2b Domain Of Rabphilin3a		2e-07
3rpb_A	140	The C2b-Domain Of Rabphilin: Structural Variations		2e-07
3m7f_B	176	Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX		5e-07
2cm5_A	166	Crystal Structure Of The C2b Domain Of Rabphilin Le		7e-07
3pfq_A	674	Crystal Structure And Allosteric Activation Of Prot		1e-06
1a25_A	149	C2 Domain From Protein Kinase C (Beta) Length = 149		2e-05
1wfj_A	136	C2 Domain-Containing Protein From Putative Elicitor		3e-05
1dsy_A	139	C2 Domain From Protein Kinase C (Alpha) Complexed W		3e-05
3gpe_A	137	Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain		3e-05
3hn8_A	296	Crystal Structure Of Synaptotagmin Length = 296		5e-05
3kwt_A	148	Munc13-1 C2b-Domain, Calcium-Free Length = 148		6e-05
1dqv_A	296	Crystal Structure Of Synaptotagmin Iii C2aC2B Lengt		6e-05
2uzp_A	144	Crystal Structure Of The C2 Domain Of Human Protein		7e-05
1rh8_A	142	Three-Dimensional Structure Of The Calcium-Free Pic		1e-04
2r83_A	284	Crystal Structure Analysis Of Human Synaptotagmin 1		2e-04
1byn_A	128	Solution Structure Of The Calcium-Bound First C2-Do		3e-04
1rsy_A	152	Structure Of The First C2-domain Of Synaptotagmin I		4e-04
3f04_A	143	Crystal Structure Of Synaptotagmin I C2a Domain Len		4e-04
3f00_A	143	Crystal Structure Of Synaptotagmin I C2a Domain Wit		4e-04
4dnl_A	140	Crystal Structure Of A C2 Domain Of A Protein Kinas		4e-04

>pdb|3JZY|A Chain A, Crystal Structure Of Human Intersectin 2 C2 Domain Length = 510

Iteration: 1
 Score = 56.2 bits (134), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 56/111 (50%), Gaps = 9/111 (8%)
Query: 5   MGLLRVHVLRGVNL-AVRDVVSSDPYVVIKMGKQ-LKTRVVKNNVNPEWNEDLTLSISDS 62
           +G L VHV+    L A +    S+PY  I MG Q   TR +++ +NP+WN +    I D 
Sbjct: 386 IGRLMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFIKDL 445
Query: 63  NLPI-KLTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKI 112
              +  LT++D+D FS DD +G  E  +       K+R E    G +  ++
Sbjct: 446 YQDVLCLTLFDRDQFSPDDFLGRTEIPVA------KIRTEQESKGPMTRRL 490

>pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3 Ubiquitin-Protein Ligase Nedd4-Like Protein Length = 155

Iteration: 1
 Score = 54.3 bits (129), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 54/89 (60%), Gaps = 9/89 (10%)
Query: 7   LLRVHVLRGVNLAVRDVV-SSDPYVVIKM-----GKQL---KTRVVKNNVNPEWNEDLTL 57
           +LRV V+ G++LA +D+  +SDPYV + +      ++L   +T+ +K  +NP+WNE+   
Sbjct: 22  ILRVKVVSGIDLAKKDIFGASDPYVKLSLYVADENRELALVQTKTIKKTLNPKWNEEFYF 81
Query: 58  SISDSNLPIKLTVYDKDTFSLDDKMGDAE 86
            ++ SN  +   V+D++  + DD +G  +
Sbjct: 82  RVNPSNHRLLFEVFDENRLTRDDFLGQVD 110

>pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human Mctp2 Protein Length = 133

Iteration: 1
 Score = 53.5 bits (127), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 50/81 (61%), Gaps = 2/81 (2%)
Query: 5  MGLLRVHVLRGVNLAVRDVVS-SDPYVVIKMGK-QLKTRVVKNNVNPEWNEDLTLSISDS 62
          +G+L+V VL+  +L   D    SDP+ ++++G  +L+T  V  N+NPEWN+  T  I D 
Sbjct: 12 VGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDI 71
Query: 63 NLPIKLTVYDKDTFSLDDKMG 83
          +  +++TV+D+D     D +G
Sbjct: 72 HDVLEVTVFDEDGDKPPDFLG 92

>pdb|3B7Y|A Chain A, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin- Protein Ligase Nedd4 Length = 153

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/93 (26%), Positives = 53/93 (56%), Gaps = 8/93 (8%)
Query: 7   LLRVHVLRGVNLAVRDVV-SSDPYVVIKMGKQL-------KTRVVKNNVNPEWNEDLTLS 58
           ++RV V+ G+ LA +D++ +SDPYV + +   +       +T+ +K ++NP+WNE++   
Sbjct: 21  IVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFR 80
Query: 59  ISDSNLPIKLTVYDKDTFSLDDKMGDAEFYITP 91
           +      +   V+D++  + DD +G  +  + P
Sbjct: 81  VHPQQHRLLFEVFDENRLTRDDFLGQVDVPLYP 113

>pdb|2CM6|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin3a Length = 166

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 68/132 (51%), Gaps = 14/132 (10%)
Query: 5   MGLLRVHVLRGVNLAVRDVVS-SDPYVVI----KMGKQLK--TRVVKNNVNPEWNEDLTL 57
            G L V ++R V+LA  D    SDP+V +     MGK+ K  T++ K  +NPE+NE+   
Sbjct: 36  QGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFY 95
Query: 58  SISDSNLPIK---LTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQP 114
            I  S+L  K   ++V+D D    +D +G  +  I+   E LK   E L N     KI+ 
Sbjct: 96  DIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECLKNKD--KKIE- 152
Query: 115 SRENCLAEESHI 126
            R + L  E+H+
Sbjct: 153 -RWHQLQNENHV 163

>pdb|3RPB|A Chain A, The C2b-Domain Of Rabphilin: Structural Variations In A Janus-Faced Domain Length = 140

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/111 (35%), Positives = 58/111 (52%), Gaps = 10/111 (9%)
Query: 5   MGLLRVHVLRGVNLAVRDVVS-SDPYVVI----KMGKQLK--TRVVKNNVNPEWNEDLTL 57
            G L V ++R V+LA  D    SDP+V +     MGK+ K  T++ K  +NPE+NE+   
Sbjct: 14  QGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFY 73
Query: 58  SISDSNLPIK---LTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLEGLPN 105
            I  S+L  K   ++V+D D    +D +G  +  I+   E LK   E L N
Sbjct: 74  DIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECLKN 124

>pdb|3M7F|B Chain B, Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX Length = 176

Iteration: 1
 Score = 50.1 bits (118), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 53/94 (56%), Gaps = 8/94 (8%)
Query: 7   LLRVHVLRGVNLAVRDVV-SSDPYVVIKMGKQL-------KTRVVKNNVNPEWNEDLTLS 58
           ++RV V+ G+ LA +D++ +SDPYV + +   +       +T+ +K ++NP+WNE++   
Sbjct: 9   VVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFR 68
Query: 59  ISDSNLPIKLTVYDKDTFSLDDKMGDAEFYITPF 92
           +      I   V+D++  + DD +G  +  + P 
Sbjct: 69  VLPQRHRILFEVFDENRLTRDDFLGQVDVPLYPL 102

>pdb|2CM5|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin Length = 166

Iteration: 1
 Score = 50.1 bits (118), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 38/111 (34%), Positives = 58/111 (52%), Gaps = 10/111 (9%)
Query: 5   MGLLRVHVLRGVNLAVRDVVS-SDPYVVIKM----GKQLK--TRVVKNNVNPEWNEDLTL 57
            G L V ++R V+LA  D    SDP+V + +    GK+ K  T++ K  +NPE+NE+   
Sbjct: 36  QGGLIVGIIRCVHLAAXDANGYSDPFVKLWLKPDXGKKAKHKTQIKKKTLNPEFNEEFFY 95
Query: 58  SISDSNLPIK---LTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLEGLPN 105
            I  S+L  K   ++V+D D    +D +G  +  I+   E LK   E L N
Sbjct: 96  DIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECLKN 146

>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein Kinase C Beta Ii Length = 674

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 10/79 (12%)
Query: 26  SDPYVVIKM-------GKQLKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTV--YDKDTF 76
           SDPYV +K+        KQ KT+ +K+++NPEWNE     + +S+   +L+V  +D D  
Sbjct: 193 SDPYVKLKLIPDPKSESKQ-KTKTIKSSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLT 251
Query: 77  SLDDKMGDAEFYITPFLEA 95
           S +D MG   F I+   +A
Sbjct: 252 SRNDFMGSLSFGISELQKA 270

>pdb|1A25|A Chain A, C2 Domain From Protein Kinase C (Beta) Length = 149

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 10/79 (12%)
Query: 26  SDPYVVIKM-------GKQLKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTV--YDKDTF 76
           SDPYV +K+        KQ KT+ +K ++NPEWNE     + +S+   +L+V  +D D  
Sbjct: 52  SDPYVKLKLIPDPKSESKQ-KTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLT 110
Query: 77  SLDDKMGDAEFYITPFLEA 95
           S +D MG   F I+   +A
Sbjct: 111 SRNDFMGSLSFGISELQKA 129

>pdb|1WFJ|A Chain A, C2 Domain-Containing Protein From Putative Elicitor- Responsive Gene Length = 136

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 4/94 (4%)
Query: 6   GLLRVHVLRGVNLAVRDVVSS-DPYVVIKMGKQ-LKTRVVKN-NVNPEWNEDLTLSISDS 62
           G L V ++    L   D +++ DPYV +    Q  K+ V +     PEWNE    ++S+ 
Sbjct: 10  GTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEG 69
Query: 63  NLPIKLTVYDKDTFSLDDKMGDAEFYITP-FLEA 95
              +K  ++DKD  + DD +G+A   + P F+E 
Sbjct: 70  TTELKAKIFDKDVGTEDDAVGEATIPLEPVFVEG 103

>pdb|1DSY|A Chain A, C2 Domain From Protein Kinase C (Alpha) Complexed With Ca2+ And Phosphatidylserine Length = 139

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 46/85 (54%), Gaps = 11/85 (12%)
Query: 26  SDPYVVIKM------GKQLKTRVVKNNVNPEWNEDLTLSI--SDSNLPIKLTVYDKDTFS 77
           SDPYV +K+        + KT+ +++ +NP+WNE  T  +  SD +  + + ++D D  +
Sbjct: 38  SDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLKPSDKDRRLSVEIWDWDRTT 97
Query: 78  LDDKMGDAEFYITPFLEALKMRLEG 102
            +D MG   F ++   E +KM   G
Sbjct: 98  RNDFMGSLSFGVS---ELMKMPASG 119

>pdb|3GPE|A Chain A, Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain Complexed With Ca2+ And Ptdins(4,5)p2 Length = 137

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 13/86 (15%)
Query: 26  SDPYVVIKM-------GKQLKTRVVKNNVNPEWNEDLTLSI--SDSNLPIKLTVYDKDTF 76
           SDPYV +K+        KQ KT+ +++ +NP+WNE  T  +  SD +  + + ++D D  
Sbjct: 37  SDPYVKLKLIPDPKNESKQ-KTKTIRSTLNPQWNESFTFKLKPSDKDRRLSVEIWDWDRT 95
Query: 77  SLDDKMGDAEFYITPFLEALKMRLEG 102
           + +D MG   F ++   E +KM   G
Sbjct: 96  TRNDFMGSLSFGVS---ELMKMPASG 118

>pdb|3HN8|A Chain A, Crystal Structure Of Synaptotagmin Length = 296

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 10/88 (11%)
Query: 6   GLLRVHVLRGVNLAVRDVVS-SDPYV---VIKMGKQLKTR---VVKNNVNPEWNEDLTLS 58
           GLL V +++  NL   D+   SDPYV   +I  G++LK R   + KN +NP +NE L   
Sbjct: 153 GLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFD 212
Query: 59  I---SDSNLPIKLTVYDKDTFSLDDKMG 83
           +   S  N+ + + V D D    ++ +G
Sbjct: 213 VAPESVENVGLSIAVVDYDCIGHNEVIG 240

>pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free Length = 148

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 25 SSDPYVVIKMGKQLK-TRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKD 74
          SSDPYV +++GK  K T+ +  N+NP W E+      +S+  IK+ V D+D
Sbjct: 37 SSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSSDRIKVRVLDED 87

>pdb|1DQV|A Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B Length = 296

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 10/88 (11%)
Query: 6   GLLRVHVLRGVNLAVRDVVS-SDPYV---VIKMGKQLKTR---VVKNNVNPEWNEDLTLS 58
           GLL V +++  NL   D+   SDPYV   +I  G++LK R   + KN +NP +NE L   
Sbjct: 152 GLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFD 211
Query: 59  I---SDSNLPIKLTVYDKDTFSLDDKMG 83
           +   S  N+ + + V D D    ++ +G
Sbjct: 212 VAPESVENVGLSIAVVDYDCIGHNEVIG 239

>pdb|2UZP|A Chain A, Crystal Structure Of The C2 Domain Of Human Protein Kinase C Gamma. Length = 144

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 43/79 (54%), Gaps = 10/79 (12%)
Query: 26  SDPYVVIKM-------GKQLKTRVVKNNVNPEWNEDLTLSISDSNLPIKLT--VYDKDTF 76
           SDPYV +K+        KQ KTR VK  +NP WNE    ++   ++  +L+  V+D D  
Sbjct: 41  SDPYVKLKLIPDPRNLTKQ-KTRTVKATLNPVWNETFVFNLKPGDVERRLSVEVWDWDRT 99
Query: 77  SLDDKMGDAEFYITPFLEA 95
           S +D MG   F ++  L+A
Sbjct: 100 SRNDFMGAMSFGVSELLKA 118

>pdb|1RH8|A Chain A, Three-Dimensional Structure Of The Calcium-Free Piccolo C2a- Domain Length = 142

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 55/100 (55%), Gaps = 20/100 (20%)
Query: 5   MGLLRVHVLRGVNLAVRDVVS-SDPYVVIKM--GK-------------QLKTRVVKNNVN 48
           +G L +H+L+  NL  RD    SDP+V + +  G+             + +T+ V+ ++N
Sbjct: 17  LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLN 76
Query: 49  PEWNEDLTL-SISDSNL---PIKLTVYDKDTFSLDDKMGD 84
           PEWN+ +   SIS   L    +++TV+D D FS +D +G+
Sbjct: 77  PEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGE 116

>pdb|2R83|A Chain A, Crystal Structure Analysis Of Human Synaptotagmin 1 C2a-c2b Length = 284

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 8/85 (9%)
Query: 8   LRVHVLRGVNLAVRDVV-SSDPYVVIKM----GKQLKTRVVKNNVNPEWNEDLTLSISDS 62
           L V +++   L   D+  +SDPYV + +     K+ +T+V +  +NP +NE  T  +  S
Sbjct: 21  LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 80
Query: 63  NLPIK---LTVYDKDTFSLDDKMGD 84
            L  K   + VYD D FS  D +G+
Sbjct: 81  ELAGKTLVMAVYDFDRFSKHDIIGE 105

>pdb|1BYN|A Chain A, Solution Structure Of The Calcium-Bound First C2-Domain Of Synaptotagmin I Length = 128

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 8/85 (9%)
Query: 8   LRVHVLRGVNLAVRDVV-SSDPYVVIKM----GKQLKTRVVKNNVNPEWNEDLTLSISDS 62
           L V +++   L   D+  +SDPYV + +     K+ +T+V +  +NP +NE  T  +  S
Sbjct: 19  LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 78
Query: 63  NLPIK---LTVYDKDTFSLDDKMGD 84
            L  K   + VYD D FS  D +G+
Sbjct: 79  ELGGKTLVMAVYDFDRFSKHDIIGE 103

>pdb|1RSY|A Chain A, Structure Of The First C2-domain Of Synaptotagmin I: A Novel Ca2+(slash)phospholipid Binding Fold Length = 152

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 8/85 (9%)
Query: 8   LRVHVLRGVNLAVRDVV-SSDPYVVIKM----GKQLKTRVVKNNVNPEWNEDLTLSISDS 62
           L V +++   L   D+  +SDPYV + +     K+ +T+V +  +NP +NE  T  +  S
Sbjct: 44  LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 103
Query: 63  NLPIK---LTVYDKDTFSLDDKMGD 84
            L  K   + VYD D FS  D +G+
Sbjct: 104 ELGGKTLVMAVYDFDRFSKHDIIGE 128

>pdb|3F04|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain Length = 143

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 8/85 (9%)
Query: 8   LRVHVLRGVNLAVRDVV-SSDPYVVIKM----GKQLKTRVVKNNVNPEWNEDLTLSISDS 62
           L V +++   L   D+  +SDPYV + +     K+ +T+V +  +NP +NE  T  +  S
Sbjct: 36  LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 95
Query: 63  NLPIK---LTVYDKDTFSLDDKMGD 84
            L  K   + VYD D FS  D +G+
Sbjct: 96  ELGGKTLVMAVYDFDRFSKHDIIGE 120

>pdb|3F00|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With Cu(Ii) Length = 143

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 8/85 (9%)
Query: 8   LRVHVLRGVNLAVRDVV-SSDPYVVIKM----GKQLKTRVVKNNVNPEWNEDLTLSISDS 62
           L V +++   L   D+  +SDPYV + +     K+ +T+V +  +NP +NE  T  +  S
Sbjct: 36  LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 95
Query: 63  NLPIK---LTVYDKDTFSLDDKMGD 84
            L  K   + VYD D FS  D +G+
Sbjct: 96  ELGGKTLVMAVYDFDRFSKHDIIGE 120

>pdb|4DNL|A Chain A, Crystal Structure Of A C2 Domain Of A Protein Kinase C Alpha (Prkca) From Homo Sapiens At 1.90 A Resolution Length = 140

Iteration: 1
 Score = 40.4 bits (93), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 9/92 (9%)
Query: 8   LRVHVLRGVNLAVRDVVS-SDPYVVIKM------GKQLKTRVVKNNVNPEWNEDLTLSI- 59
           L V V    NL   D    SDPYV +K+        + KT+ +++ +NP+WNE  T  + 
Sbjct: 20  LHVTVRDAKNLIPXDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLK 79
Query: 60  -SDSNLPIKLTVYDKDTFSLDDKMGDAEFYIT 90
            SD +  + + ++D D  + +D  G   F ++
Sbjct: 80  PSDKDRRLSVEIWDWDRTTRNDFXGSLSFGVS 111

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	164
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	3e-34
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	3e-32
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	1e-30
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	8e-30
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	3e-29
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	6e-29
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	2e-26
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	1e-24
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	3e-24
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	7e-21
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	1e-20
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	3e-20
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	4e-20
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	1e-19
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	4e-19
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	2e-15
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	4e-19
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	6e-19
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	6e-19
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	2e-15
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	1e-18
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	8e-18
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	9e-18
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	1e-17
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	2e-17
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	3e-17
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	4e-17
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	5e-17
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	6e-17
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	1e-16
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	3e-16
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	4e-16
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	5e-16
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	6e-16
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	1e-15
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	1e-15
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	1e-15
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	2e-15
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	7e-14
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	1e-13
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	4e-12
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	3e-08
1djx_A	624	PLC-D1, phosphoinositide-specific phospholipase C,	7e-06
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	2e-04
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	4e-04

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133

 Score =  116 bits (292), Expect = 3e-34
 Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 9/122 (7%)

Query: 1   MENLMGLLRVHVLRGVNLAVRDVV-SSDPYVVIKMGKQ-LKTRVVKNNVNPEWNEDLTLS 58
               +G+L+V VL+  +L   D    SDP+ ++++G   L+T  V  N+NPEWN+  T  
Sbjct: 8   DVKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFP 67

Query: 59  ISDSNLPIKLTVYDKDTFSLDDKMGDAEFYITPFLEA-------LKMRLEGLPNGTIVTK 111
           I D +  +++TV+D+D     D +G     +    +            LE    G I  +
Sbjct: 68  IKDIHDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQPNCYVLKNKDLEQAFKGVIYLE 127

Query: 112 IQ 113
           + 
Sbjct: 128 MD 129

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136

 Score =  110 bits (278), Expect = 3e-32
 Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 3/97 (3%)

Query: 5   MGLLRVHVLRGVNLAVRDVV-SSDPYVVIKMGKQ-LKTRVVKN-NVNPEWNEDLTLSISD 61
            G L V ++    L   D + + DPYV +    Q  K+ V +     PEWNE    ++S+
Sbjct: 9   HGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSE 68

Query: 62  SNLPIKLTVYDKDTFSLDDKMGDAEFYITPFLEALKM 98
               +K  ++DKD  + DD +G+A   + P      +
Sbjct: 69  GTTELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSI 105

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173

 Score =  108 bits (270), Expect = 1e-30
 Identities = 23/101 (22%), Positives = 43/101 (42%), Gaps = 3/101 (2%)

Query: 3   NLMGLLRVHVLRGVNLAVRDVV-SSDPYVVIKMGKQ-LKTRVVKNNVNPEWNEDLTLSIS 60
            +   L++ V+       +       PYV + +  Q  KT    N  +P+W + LT+ ++
Sbjct: 33  TMKSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVT 92

Query: 61  DSNLPIKLTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLE 101
             +  +   V+   T   D  +G A   I   L++  M+LE
Sbjct: 93  PVS-KLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLE 132

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140

 Score =  105 bits (263), Expect = 8e-30
 Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 5/88 (5%)

Query: 5  MGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQ-LKTRVVKNNVNPEWNEDLTLSISDSN 63
           G+LRV V    N+        DP V +    +  KT+ V N +NP WNE L   +    
Sbjct: 6  SGMLRVIVESASNIPKTKFGKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIP 65

Query: 64 L----PIKLTVYDKDTFSLDDKMGDAEF 87
          L     + + V D +T   +  +G A  
Sbjct: 66 LDFSSSLGIIVKDFETIGQNKLIGTATV 93

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153

 Score =  104 bits (260), Expect = 3e-29
 Identities = 24/91 (26%), Positives = 51/91 (56%), Gaps = 8/91 (8%)

Query: 5   MGLLRVHVLRGVNLAVRDVV-SSDPYVVIKMG-------KQLKTRVVKNNVNPEWNEDLT 56
             ++RV V+ G+ LA +D++ +SDPYV + +          ++T+ +K ++NP+WNE++ 
Sbjct: 19  SRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEIL 78

Query: 57  LSISDSNLPIKLTVYDKDTFSLDDKMGDAEF 87
             +      +   V+D++  + DD +G  + 
Sbjct: 79  FRVHPQQHRLLFEVFDENRLTRDDFLGQVDV 109

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176

 Score =  103 bits (259), Expect = 6e-29
 Identities = 34/156 (21%), Positives = 67/156 (42%), Gaps = 18/156 (11%)

Query: 5   MGLLRVHVLRGVNLAVRDVV-SSDPYVVIKMGKQ-------LKTRVVKNNVNPEWNEDLT 56
             ++RV V+ G+ LA +D++ +SDPYV + +          ++T+ +K ++NP+WNE++ 
Sbjct: 7   TRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEIL 66

Query: 57  LSISDSNLPIKLTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSR 116
             +      I   V+D++  + DD +G  +  + P                 + +    +
Sbjct: 67  FRVLPQRHRILFEVFDENRLTRDDFLGQVDVPLYPL----------PTENPRMERPYTFK 116

Query: 117 ENCLAEESHIVWTDGKLVQNLFLRLRNVEVGEVKIQ 152
           +  L   SH     G L   +    +N    E   Q
Sbjct: 117 DFVLHPRSHKSRVKGYLRLKMTYLPKNGSEDENADQ 152

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136

 Score = 96.1 bits (239), Expect = 2e-26
 Identities = 23/136 (16%), Positives = 45/136 (33%), Gaps = 19/136 (13%)

Query: 1   MENLMGLLRVHVLRGVNLAVRDVV------------SSDPYVVIKMGKQ--LKTRVVKNN 46
           M    GLL++ +   V+L                    DPY+ + +      +T   +  
Sbjct: 1   MVVFNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKT 60

Query: 47  VNPEWNEDLTLSISDSNLPIKLTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLEG---- 102
            +P W+++    + +    I+L V+       DD + +        L+      E     
Sbjct: 61  NSPAWHDEFVTDVCNGR-KIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDL 119

Query: 103 LPNGTIVTKIQPSREN 118
            P G +   I  S  +
Sbjct: 120 EPEGKVYVIIDLSGSS 135

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540

 Score = 97.7 bits (242), Expect = 1e-24
 Identities = 23/96 (23%), Positives = 39/96 (40%), Gaps = 3/96 (3%)

Query: 9   RVHVLRGVNLAVRDVVSSDPYVVIKMGKQ-LKTRVVKNNVNPEWNEDLTLSISDSNL--P 65
            V   R  +L      ++D Y+ +  G Q  +T VV NN NP W + +       +   P
Sbjct: 397 VVSNFRAEHLWGDYTTATDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVLLSTGGP 456

Query: 66  IKLTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLE 101
           +++ V+D D    DD +G  +         +   L 
Sbjct: 457 LRVQVWDADYGWDDDLLGSCDRSPHSGFHEVTCELN 492

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148

 Score = 91.0 bits (226), Expect = 3e-24
 Identities = 26/105 (24%), Positives = 44/105 (41%), Gaps = 13/105 (12%)

Query: 1   MENLMGLLRVHVLRGVNLAVRDVV-SSDPYVVIKMGKQ-LKTRVVKNNVNPEWNEDLTLS 58
                  + + V+    L  +D   SSDPYV +++GK   +T+ +  N+NP W E+    
Sbjct: 12  TSKWSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFE 71

Query: 59  ISDSNLPIKLTVYDKD-----------TFSLDDKMGDAEFYITPF 92
             +S+  IK+ V D+D               DD +G     +   
Sbjct: 72  CHNSSDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTL 116

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126

 Score = 81.6 bits (202), Expect = 7e-21
 Identities = 22/91 (24%), Positives = 38/91 (41%), Gaps = 10/91 (10%)

Query: 6  GLLRVHVLRGVNLAVRDVV----SSDPYVVIKMG----KQLKTRVVKNNVNPEWNEDLTL 57
              V VLR   +          + DPYV + +      + +TR   N++NP WNE    
Sbjct: 3  HKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEF 62

Query: 58 SISD-SNLPIKLTVYDKDTFSLDDKMGDAEF 87
           +       +++T+ D +    D+ +G A F
Sbjct: 63 ILDPNQENVLEITLMDANYVM-DETLGTATF 92

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157

 Score = 81.9 bits (202), Expect = 1e-20
 Identities = 18/102 (17%), Positives = 36/102 (35%), Gaps = 14/102 (13%)

Query: 6   GLLRVHVLRGVNLAVRDV-----------VSSDPYVVIKMGKQ--LKTRVVKNNVNPEWN 52
           G LRV +   V L                   DPY+ + + +    +T   +    P +N
Sbjct: 29  GYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYN 88

Query: 53  EDLTLSISDSNLPIKLTVYDKDTFSLDDKMGDAEFYITPFLE 94
           E+   +++D    ++L V+ +     D  + +        L 
Sbjct: 89  EEFCANVTDGG-HLELAVFHETPLGYDHFVANCTLQFQELLR 129

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149

 Score = 80.9 bits (200), Expect = 3e-20
 Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 9/91 (9%)

Query: 6   GLLRVHVLRGVNLAVRDVV-SSDPYVVIKM------GKQLKTRVVKNNVNPEWNEDLTLS 58
            +L V V    NL   D    SDPYV +K+        + KT+ +K ++NPEWNE     
Sbjct: 31  EVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQ 90

Query: 59  ISDSNLPIKL--TVYDKDTFSLDDKMGDAEF 87
           + +S+   +L   ++D D  S +D MG   F
Sbjct: 91  LKESDKDRRLSVEIWDWDLTSRNDFMGSLSF 121

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132

 Score = 79.7 bits (197), Expect = 4e-20
 Identities = 24/103 (23%), Positives = 45/103 (43%), Gaps = 13/103 (12%)

Query: 8   LRVHVLRGVNLAVRDVV-SSDPYVVIKM---GKQLKTRVVKNNVNPEWNEDLTLSISDSN 63
           +R+ VL   NLA +D     DP+  I +   G+   T  VKN ++P+WN+   L +  ++
Sbjct: 7   IRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVGKTD 66

Query: 64  LPIKLTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLEGLPNG 106
             I ++V++          G        FL  +++    +   
Sbjct: 67  -SITISVWNHKKIHKKQGAG--------FLGCVRLLSNAISRL 100

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284

 Score = 80.6 bits (199), Expect = 4e-19
 Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 8/94 (8%)

Query: 5   MGLLRVHVLRGVNLAVRDVV-SSDPYVVIKM----GKQLKTRVVKNNVNPEWNEDLTLSI 59
              L V +++   L   D+  +SDPYV + +     K+ +T+V +  +NP +NE  T  +
Sbjct: 18  NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKV 77

Query: 60  SDSNLP---IKLTVYDKDTFSLDDKMGDAEFYIT 90
             S L    + + VYD D FS  D +G+ +  + 
Sbjct: 78  PYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMN 111

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284

 Score = 70.6 bits (173), Expect = 2e-15
 Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 10/88 (11%)

Query: 6   GLLRVHVLRGVNLAVRDVV-SSDPYVVIKMG------KQLKTRVVKNNVNPEWNEDLTLS 58
           G L V +L   NL   DV   SDPYV I +       K+ KT + KN +NP +NE  +  
Sbjct: 150 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 209

Query: 59  ISDSNLP---IKLTVYDKDTFSLDDKMG 83
           +    +    + +TV D D    +D +G
Sbjct: 210 VPFEQIQKVQVVVTVLDYDKIGKNDAIG 237

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143

 Score = 77.8 bits (192), Expect = 4e-19
 Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 8/90 (8%)

Query: 6   GLLRVHVLRGVNLAVRDVV-SSDPYVVIKM----GKQLKTRVVKNNVNPEWNEDLTLSIS 60
             L V +++   L   D+  +SDPYV + +     K+ +T+V +  +NP +NE  T  + 
Sbjct: 34  NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVP 93

Query: 61  DSNLPIK---LTVYDKDTFSLDDKMGDAEF 87
            S L  K   + VYD D FS  D +G+ + 
Sbjct: 94  YSELGGKTLVMAVYDFDRFSKHDIIGEFKV 123

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152

 Score = 77.5 bits (191), Expect = 6e-19
 Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 8/90 (8%)

Query: 6   GLLRVHVLRGVNLAVRDVV-SSDPYVVIKM----GKQLKTRVVKNNVNPEWNEDLTLSIS 60
             L V +++   L   D+  +SDPYV + +     K+ +T+V +  +NP +NE  T  + 
Sbjct: 42  NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVP 101

Query: 61  DSNLPIK---LTVYDKDTFSLDDKMGDAEF 87
            S L  K   + VYD D FS  D +G+ + 
Sbjct: 102 YSELGGKTLVMAVYDFDRFSKHDIIGEFKV 131

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296

 Score = 80.3 bits (198), Expect = 6e-19
 Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 8/91 (8%)

Query: 5   MGLLRVHVLRGVNLAVRDVV-SSDPYVVIKM----GKQLKTRVVKNNVNPEWNEDLTLSI 59
              L V +L+ ++L  +D    SDPYV I +     K+ +T+V +  +NP +NE    S+
Sbjct: 19  SDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSV 78

Query: 60  SDSNLP---IKLTVYDKDTFSLDDKMGDAEF 87
             + L    +  +VYD D FS  D +G    
Sbjct: 79  PLAELAQRKLHFSVYDFDRFSRHDLIGQVVL 109

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296

 Score = 70.6 bits (173), Expect = 2e-15
 Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 10/88 (11%)

Query: 6   GLLRVHVLRGVNLAVRDVV-SSDPYVVIKMG------KQLKTRVVKNNVNPEWNEDLTLS 58
           GLL V +++  NL   D+   SDPYV   +       K+ KT + KN +NP +NE L   
Sbjct: 152 GLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFD 211

Query: 59  ISDSNLP---IKLTVYDKDTFSLDDKMG 83
           ++  ++    + + V D D    ++ +G
Sbjct: 212 VAPESVENVGLSIAVVDYDCIGHNEVIG 239

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749

 Score = 81.1 bits (199), Expect = 1e-18
 Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 10/91 (10%)

Query: 6   GLLRVHVLRGVNL---AVRDVVS-SDPYVVIKMG----KQLKTRVVKNNVNPEWNEDLTL 57
               V VLR   +   A  D++   DPYV + +      + +TR   N++NP WNE    
Sbjct: 18  HKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEF 77

Query: 58  SISDSNLP-IKLTVYDKDTFSLDDKMGDAEF 87
            +  +    +++T+ D +    D+ +G A F
Sbjct: 78  ILDPNQENVLEITLMDANYVM-DETLGTATF 107

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148

 Score = 74.3 bits (183), Expect = 8e-18
 Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 13/94 (13%)

Query: 6   GLLRVHVLRGVNLAVRDVVS--SDPYVVI-------KMGKQLKTRVVKNNVNPEWNEDLT 56
             L VHV     LA  D     S+PYV         + GK+ KT + ++ VNP ++E L 
Sbjct: 23  QSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKR-KTSIKRDTVNPLYDETLR 81

Query: 57  LSISDSNLPIK---LTVYDKDTFSLDDKMGDAEF 87
             I +S L  +    +V+    F  +  +G+AE 
Sbjct: 82  YEIPESLLAQRTLQFSVWHHGRFGRNTFLGEAEI 115

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142

 Score = 73.9 bits (182), Expect = 9e-18
 Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 13/94 (13%)

Query: 6   GLLRVHVLRGVNLAVRDVVSSDPYVVI-------KMGKQLKTRVVKNNVNPEWNEDLTLS 58
             L V V    NL       SDPYV +       + G++ KT V K  +NP +++    S
Sbjct: 24  NKLIVVVHACRNLIAFSEDGSDPYVRMYLLPDKRRSGRR-KTHVSKKTLNPVFDQSFDFS 82

Query: 59  ISDSNLPIK---LTVYDKDTFSLDDK--MGDAEF 87
           +S   +  +   + V +   F   DK  +G    
Sbjct: 83  VSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLV 116

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141

 Score = 73.9 bits (182), Expect = 1e-17
 Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 9/91 (9%)

Query: 6   GLLRVHVLRGVNLAVRDVV-SSDPYVVIKM----GKQLKTRVVKNNVNPEWNEDLTLS-I 59
             L V +++   L  +D   +SDP+V I +      +L+T+V + N+NP WNE       
Sbjct: 26  STLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGF 85

Query: 60  SDSNLPIK---LTVYDKDTFSLDDKMGDAEF 87
               +  +   L V D D FS +D +G+   
Sbjct: 86  PYEKVVQRILYLQVLDYDRFSRNDPIGEVSI 116

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155

 Score = 73.6 bits (181), Expect = 2e-17
 Identities = 15/93 (16%), Positives = 33/93 (35%), Gaps = 11/93 (11%)

Query: 6   GLLRVHVLRGVNLAVRDV-VSSDPYVVI-------KMGKQLKTRVVKNNVNPEWNEDLTL 57
               + +++  NL+           + +             +TR +  +    +NE   +
Sbjct: 43  KQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWV 102

Query: 58  SISDSNLPIK---LTVYDKDTFSLDDKMGDAEF 87
           S+S   L  K   + V   D   L++ +G A+ 
Sbjct: 103 SMSYPALHQKTLRVDVCTTDRSHLEECLGGAQI 135

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score = 72.8 bits (179), Expect = 3e-17
 Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 10/92 (10%)

Query: 6   GLLRVHVLRGVNLAVRDV--VSSDPYVVIKM----GKQLKTRVVKNNVNPEWNEDLTLS- 58
               V++     L   D   ++SDPY+ + +      ++KTRV++  ++P ++E  T   
Sbjct: 22  KAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYG 81

Query: 59  ISDSNLPIK---LTVYDKDTFSLDDKMGDAEF 87
           I  + +       T+   D FS DD +G+   
Sbjct: 82  IPYTQIQELALHFTILSFDRFSRDDIIGEVLI 113

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score = 72.4 bits (178), Expect = 4e-17
 Identities = 21/88 (23%), Positives = 32/88 (36%), Gaps = 10/88 (11%)

Query: 8   LRVHVLRGVNLAVRDVVSSDPYVVIKM-----GKQLKTRVVKNNVNPEWNEDLTLSISDS 62
           L V  L  V          D YV   +       + +T + K  ++  W E L L +++ 
Sbjct: 28  LFVTRLEAVTSNHDG--GCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEE 85

Query: 63  NLPIK---LTVYDKDTFSLDDKMGDAEF 87
            LP     LT+   D FS     G+   
Sbjct: 86  ELPTATLTLTLRTCDRFSRHSVAGELRL 113

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138

 Score = 72.0 bits (177), Expect = 5e-17
 Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 12/89 (13%)

Query: 6   GLLRVHVLRGVNLAVRDVV-SSDPYVVI-------KMGKQLKTRVVKNNVNPEWNEDLTL 57
             + V++++  NL   D+  +SDPYV +       ++ K+ KT   K N+NP +NE    
Sbjct: 16  NSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKK-KTVTKKRNLNPIFNESFAF 74

Query: 58  SISDSNLP---IKLTVYDKDTFSLDDKMG 83
            I    L    I +TV DKD  S +D +G
Sbjct: 75  DIPTEKLRETTIIITVMDKDKLSRNDVIG 103

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142

 Score = 72.0 bits (177), Expect = 6e-17
 Identities = 25/93 (26%), Positives = 47/93 (50%), Gaps = 11/93 (11%)

Query: 6   GLLRVHVLRGVNLAVRDVV-SSDPYVVIKM------GKQLKTRVVKNNVNPEWNEDLTLS 58
             L+  ++R   L   D    +DPYV + +        +L+T+ ++N  NP WNE L   
Sbjct: 29  SNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYH 88

Query: 59  -ISDSNLPIK---LTVYDKDTFSLDDKMGDAEF 87
            I++ ++  K   ++V D+D F  ++ +G+  F
Sbjct: 89  GITEEDMQRKTLRISVCDEDKFGHNEFIGETRF 121

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134

 Score = 71.2 bits (175), Expect = 1e-16
 Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 12/93 (12%)

Query: 6   GLLRVHVLRGVNLAVRDVVSSDPYVVI-------KMGKQLKTRVVKNNVNPEWNEDLTLS 58
           G L + V+   +L   D    +PYV         K  K+ KT++ +   NP +NE L  S
Sbjct: 20  GTLFIMVMHIKDLVTEDGADPNPYVKTYLLPDTHKTSKR-KTKISRKTRNPTFNEMLVYS 78

Query: 59  -ISDSNLPIK---LTVYDKDTFSLDDKMGDAEF 87
             S   L  +   L+V   ++   +  +G    
Sbjct: 79  GYSKETLRQRELQLSVLSAESLRENFFLGGITL 111

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153

 Score = 70.1 bits (172), Expect = 3e-16
 Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 12/89 (13%)

Query: 6   GLLRVHVLRGVNLAVRDVV-SSDPYVVI-------KMGKQLKTRVVKNNVNPEWNEDLTL 57
             L V VL+  +L   DV   SDPYV +       ++ K+ KT V K   N  +NE    
Sbjct: 30  NTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKK-KTHVKKCTPNAVFNELFVF 88

Query: 58  SISDSNLP---IKLTVYDKDTFSLDDKMG 83
            I   +L    ++  V D +  S ++ +G
Sbjct: 89  DIPCESLEEISVEFLVLDSERGSRNEVIG 117

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153

 Score = 70.1 bits (172), Expect = 4e-16
 Identities = 20/91 (21%), Positives = 42/91 (46%), Gaps = 9/91 (9%)

Query: 6   GLLRVHVLRGVNLAVRDVVSSDPYVVIKM------GKQLKTRVVKNNVNPEWNEDLTLSI 59
            +L +H++ G  L  +   + DPYV I +       +  KT+ V +  +P ++E     +
Sbjct: 27  RVLLLHIIEGKGLISKQPGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPV 86

Query: 60  SDSNLPIKL--TVYDKDTFS-LDDKMGDAEF 87
            + +   +L  TV+++ + S     +G   F
Sbjct: 87  QEEDDQKRLLVTVWNRASQSRQSGLIGCMSF 117

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147

 Score = 69.8 bits (171), Expect = 5e-16
 Identities = 23/97 (23%), Positives = 32/97 (32%), Gaps = 15/97 (15%)

Query: 6   GLLRVHVLRGVNLAVRDVV--------SSDPYVVIKM----GKQLKTRVVKNNVNPEWNE 53
             L V V+   +L               S+PYV I +        +T V +    P + E
Sbjct: 26  NHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEE 85

Query: 54  DLTLSISDSNLPIK---LTVYDKDTFSLDDKMGDAEF 87
             T  I       +   LTV D D FS    +G    
Sbjct: 86  RYTFEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSV 122

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142

 Score = 69.4 bits (170), Expect = 6e-16
 Identities = 32/103 (31%), Positives = 52/103 (50%), Gaps = 20/103 (19%)

Query: 5   MGLLRVHVLRGVNLAVRDV-VSSDPYVVIKM---------------GKQLKTRVVKNNVN 48
           +G L +H+L+  NL  RD    SDP+V + +                 + +T+ V+ ++N
Sbjct: 17  LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLN 76

Query: 49  PEWNEDLT-LSISDSNLPIK---LTVYDKDTFSLDDKMGDAEF 87
           PEWN+ +   SIS   L  K   +TV+D D FS +D +G+   
Sbjct: 77  PEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLI 119

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159

 Score = 69.0 bits (169), Expect = 1e-15
 Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 12/89 (13%)

Query: 6   GLLRVHVLRGVNLAVRDVV-SSDPYVVI-------KMGKQLKTRVVKNNVNPEWNEDLTL 57
           G L V +L   NL   DV   SDPYV I       ++ K+ KT + KN +NP +NE  + 
Sbjct: 25  GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKK-KTTIKKNTLNPYYNESFSF 83

Query: 58  SISDSNLP---IKLTVYDKDTFSLDDKMG 83
            +    +    + +TV D D    +D +G
Sbjct: 84  EVPFEQIQKVQVVVTVLDYDKIGKNDAIG 112

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131

 Score = 68.5 bits (167), Expect = 1e-15
 Identities = 21/101 (20%), Positives = 38/101 (37%), Gaps = 6/101 (5%)

Query: 4   LMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQLKTRVVKNNVNPEWNEDLTLSISDSN 63
           +M LL V V +      ++    + YV +K+     T +      P W +D    I+  +
Sbjct: 3   VMSLLCVGVKKAKFDGAQE--KFNTYVTLKVQNVKSTTIAVRGSQPSWEQDFMFEINRLD 60

Query: 64  LPIKLTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLEGLP 104
           L + + V++K     D  +G       P     +   EG  
Sbjct: 61  LGLTVEVWNKGLIW-DTMVG---TVWIPLRTIRQSNEEGPG 97

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166

 Score = 69.0 bits (169), Expect = 1e-15
 Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 12/89 (13%)

Query: 6   GLLRVHVLRGVNLAVRDVV-SSDPYVVI-------KMGKQLKTRVVKNNVNPEWNEDLTL 57
           G L V ++R V+LA  D    SDP+V +       K  K  KT++ K  +NPE+NE+   
Sbjct: 37  GGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKH-KTQIKKKTLNPEFNEEFFY 95

Query: 58  SISDSNLP---IKLTVYDKDTFSLDDKMG 83
            I  S+L    + ++V+D D    +D +G
Sbjct: 96  DIKHSDLAKKSLDISVWDYDIGKSNDYIG 124

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171

 Score = 68.7 bits (168), Expect = 2e-15
 Identities = 21/92 (22%), Positives = 39/92 (42%), Gaps = 11/92 (11%)

Query: 6   GLLRVHVLRGVNLAVRDV--VSSDPYVVI-------KMGKQLKTRVVKNNVNPEWNEDLT 56
           G L V V+R  +L  +     +  PYV +        + K+ KTR+ +  ++P + + L 
Sbjct: 30  GQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKK-KTRIARKTLDPLYQQSLV 88

Query: 57  LSISDSNLPIKLTVY-DKDTFSLDDKMGDAEF 87
              S     +++ V+ D         MG A+ 
Sbjct: 89  FDESPQGKVLQVIVWGDYGRMDHKCFMGVAQI 120

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141

 Score = 63.9 bits (156), Expect = 7e-14
 Identities = 19/95 (20%), Positives = 39/95 (41%), Gaps = 13/95 (13%)

Query: 6   GLLRVHVLRGVNLAVRDVV-SSDPYVVIKM------GKQLKTRVVKNNVNPEWNEDLTLS 58
             L V +L   +L  R+     +PYV I          + +T+ VK  + P+WN+    S
Sbjct: 21  HQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYS 80

Query: 59  -ISDSNLPIK---LTVYDKDTFSLDDK--MGDAEF 87
            +       +   +T++D+     ++   +G+   
Sbjct: 81  PVHRREFRERMLEITLWDQARVREEESEFLGEILI 115

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129

 Score = 62.7 bits (153), Expect = 1e-13
 Identities = 19/95 (20%), Positives = 40/95 (42%), Gaps = 13/95 (13%)

Query: 6   GLLRVHVLRGVNLAVRDV-VSSDPYVVIKM------GKQLKTRVVKNNVNPEWNEDLTLS 58
             L V +L   +L  R+     +PYV I          + +T+ VK  + P+WN+    S
Sbjct: 18  HQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYS 77

Query: 59  -ISDSNLP---IKLTVYDKDTFSLDDK--MGDAEF 87
            +         +++T++D+     ++   +G+   
Sbjct: 78  PVHRREFRERMLEITLWDQARVREEESEFLGEILI 112

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 Length = 167

 Score = 60.0 bits (145), Expect = 4e-12
 Identities = 20/101 (19%), Positives = 38/101 (37%), Gaps = 6/101 (5%)

Query: 4   LMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQLKTRVVKNNVNPEWNEDLTLSISDSN 63
           ++ LL V V +      ++    + YV +K+     T +      P W +D    I+  +
Sbjct: 12  ILSLLCVGVKKAKFDGAQE--KFNTYVTLKVQNVESTTIAVRGSQPSWEQDFMFEINRLD 69

Query: 64  LPIKLTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLEGLP 104
           L + + V++K     D  +G       P     +   EG  
Sbjct: 70  LGLTVEVWNKG-LIWDTMVG---TVWIPLRTIRQSNEEGPG 106

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B Length = 510

 Score = 50.8 bits (121), Expect = 3e-08
 Identities = 35/118 (29%), Positives = 55/118 (46%), Gaps = 11/118 (9%)

Query: 6   GLLRVHVLRGVNL-AVRDVVSSDPYVVIKMGKQL-KTRVVKNNVNPEWNEDLTLSISDSN 63
           G L VHV+    L A +    S+PY  I MG Q   TR +++ +NP+WN +    I D  
Sbjct: 387 GRLMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFIKDLY 446

Query: 64  L-PIKLTVYDKDTFSLDDKMGDAEFYITPFLEAL--------KMRLEGLPNGTIVTKI 112
              + LT++D+D FS DD +G  E  +               ++ L  +P G +  + 
Sbjct: 447 QDVLCLTLFDRDQFSPDDFLGRTEIPVAKIRTEQESKGPMTRRLLLHEVPTGEVWVRF 504

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A Length = 624

 Score = 44.1 bits (103), Expect = 7e-06
 Identities = 27/123 (21%), Positives = 53/123 (43%), Gaps = 17/123 (13%)

Query: 8   LRVHVLRGVNLAVRDVVSS---DPYVVIKM------GKQLKTRVVKNN-VNPEWNEDLTL 57
           LRV ++ G  L   +   +   DP V++++          +T V+ NN  NP W+ +   
Sbjct: 499 LRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEF 558

Query: 58  SISDSNLP-IKLTVYDKDTFSLDDKMGDAEF---YITP---FLEALKMRLEGLPNGTIVT 110
            ++  +L  ++  V D D+ S +D +G +      +      +  L    +  P+ T+  
Sbjct: 559 EVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQGYRHVHLLSKNGDQHPSATLFV 618

Query: 111 KIQ 113
           KI 
Sbjct: 619 KIS 621

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} Length = 144

 Score = 38.4 bits (89), Expect = 2e-04
 Identities = 14/81 (17%), Positives = 35/81 (43%), Gaps = 9/81 (11%)

Query: 8  LRVHVLRGVNLAVRDVVSSDPYVVIKM-GKQLKTRVVKNNVNP-EWNEDLTLSIS---DS 62
          L VH+     L  R    +D    +   G+   +RV++N  +  +++E     ++   D 
Sbjct: 23 LIVHLKTVSELRGR----ADRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVASSIDR 78

Query: 63 NLPIKLTVYDKDTFSLDDKMG 83
          N  +++ +++      +  +G
Sbjct: 79 NEVLEIQIFNYSKVFSNKLIG 99

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} Length = 483

 Score = 38.8 bits (89), Expect = 4e-04
 Identities = 11/94 (11%), Positives = 26/94 (27%), Gaps = 13/94 (13%)

Query: 8   LRVHVLRGVNLAVRDVVSSDPYVVIKMGKQLKTRV-----VKNNVNPEWNEDLTLSISDS 62
           L++ ++    L  +       Y  + +   L  R        +     W E    +   +
Sbjct: 13  LKLWIIEARELPPKK----RYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNLPA 68

Query: 63  NLPIKLTVY----DKDTFSLDDKMGDAEFYITPF 92
              ++L +Y     K        +G     +   
Sbjct: 69  VRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATL 102

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	164
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	99.95
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	99.94
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	99.94
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	99.94
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	99.94
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	99.93
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	99.93
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	99.93
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	99.92
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	99.92
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	99.9
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	99.89
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	99.88
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	99.88
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	99.87
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	99.87
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	99.87
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	99.86
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	99.86
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	99.86
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	99.86
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	99.86
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	99.86
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	99.86
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	99.85
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	99.85
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	99.85
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	99.85
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	99.84
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	99.84
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	99.84
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	99.84
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	99.83
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	99.83
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	99.83
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	99.83
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	99.83
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	99.82
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	99.8
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	99.8
1djx_A	624	PLC-D1, phosphoinositide-specific phospholipase C,	99.75
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	99.74
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	99.74
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	99.7
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	99.66
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	99.59
1yrk_A	126	NPKC-delta, protein kinase C, delta type; C2 domai	99.51
2enj_A	138	NPKC-theta, protein kinase C theta type; beta-sand	99.47
3ohm_B	885	1-phosphatidylinositol-4,5-bisphosphate phosphodi	99.45
2zkm_X	799	1-phosphatidylinositol-4,5-bisphosphate phosphodie	99.44
3qr0_A	816	Phospholipase C-beta (PLC-beta); PH domain, EF han	99.43
2wxf_A	940	Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca	95.65
3hhm_A	1091	Phosphatidylinositol-4,5-bisphosphate 3-kinase cat	95.42
1e7u_A	961	Phosphatidylinositol 3-kinase catalytic subunit; p	94.94
2yrb_A	156	Protein fantom; beta sandwich, NPPSFA, national pr	94.58
3l4c_A	220	Dedicator of cytokinesis protein 1; DOCK180, DOCK1	93.3
2y3a_A	1092	Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca	92.37

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2

Probab=99.95  E-value=1.4e-26  Score=157.01  Aligned_cols=126  Identities=25%  Similarity=0.404  Sum_probs=110.6

Q ss_pred             CcccEEEEEEEEEeEcCCCCC-CCCCCcEEEEEECCE-Eeeeeee-CCCCCeEecEEEEEEeCCCCcEEEEEEeCCCCCC
Q 031204            2 ENLMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQ-LKTRVVK-NNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSL   78 (164)
Q Consensus         2 ~~~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~~-~~T~~~~-~t~~P~w~e~~~f~~~~~~~~l~i~v~d~~~~~~   78 (164)
                      ..+.|.|.|+|++|++|+..+ .+.+||||++.+.++ ++|++++ ++.||.|||+|.|.+......|.|+|||++.+++
T Consensus         6 ~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~l~~~V~d~~~~~~   85 (136)
T 1wfj_A            6 SGPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTTELKAKIFDKDVGTE   85 (136)
T ss_dssp             CCCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEESSCCEEEEEECCSSSCTT
T ss_pred             CCCcEEEEEEEEeccCCCCcccCCCcCceEEEEECCccceeEeccCCCCCCccCcEEEEEECCCCCEEEEEEEECCCCCC
Confidence            457899999999999999998 889999999999998 9999998 8999999999999998766789999999999989


Q ss_pred             CceeEEEEEechhhhhhhcccccCCCCceEEEEeccCCCccccccceeEeeCCeEEEEEeEEec--ccceeeEEEEEEEE
Q 031204           79 DDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLR--NVEVGEVKIQLEWI  156 (164)
Q Consensus        79 ~~~lG~~~v~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~--~~~~G~l~l~l~~~  156 (164)
                      |++||++.+++.++.....                                    ..+.|++|.  +...|+|+|+++|.
T Consensus        86 d~~lG~~~i~l~~l~~~~~------------------------------------~~~~w~~L~~~~~~~G~i~l~l~~~  129 (136)
T 1wfj_A           86 DDAVGEATIPLEPVFVEGS------------------------------------IPPTAYNVVKDEEYKGEIWVALSFK  129 (136)
T ss_dssp             TCCSEEEEEESHHHHHHSE------------------------------------EEEEEEEEEETTEEEEEEEEEEEEE
T ss_pred             CceEEEEEEEHHHhccCCC------------------------------------CCcEEEEeecCCccCEEEEEEEEEE
Confidence            9999999999999855321                                    236777764  45689999999999


Q ss_pred             ecCCCCC
Q 031204          157 DIPGSRG  163 (164)
Q Consensus       157 ~~~~~~~  163 (164)
                      |...+-|
T Consensus       130 p~~~~~g  136 (136)
T 1wfj_A          130 PSGPSSG  136 (136)
T ss_dssp             ECCSCCC
T ss_pred             eCCCCCC
Confidence            9988765

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}

Probab=99.94  E-value=2.2e-26  Score=159.57  Aligned_cols=117  Identities=18%  Similarity=0.322  Sum_probs=102.1

Q ss_pred             CCcccEEEEEEEEEeEcCCCCC-C----------CCCCcEEEEEECCE--EeeeeeeCCCCCeEecEEEEEEeCCCCcEE
Q 031204            1 MENLMGLLRVHVLRGVNLAVRD-V----------VSSDPYVVIKMGKQ--LKTRVVKNNVNPEWNEDLTLSISDSNLPIK   67 (164)
Q Consensus         1 ~~~~~g~L~v~v~~a~~L~~~~-~----------~~~dpyv~v~~~~~--~~T~~~~~t~~P~w~e~~~f~~~~~~~~l~   67 (164)
                      |....|.|+|+|++|++|++++ .          +.+||||++.++++  .+|+++.++.||.|||+|.|.+.. ...|.
T Consensus        24 ~~~~~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~~~~~~kT~v~~ktlnP~WNE~F~f~v~~-~~~L~  102 (157)
T 2fk9_A           24 TMKFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYNEEFCANVTD-GGHLE  102 (157)
T ss_dssp             CCCEEEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEE-ECEEE
T ss_pred             hccCccEEEEEEEEEECCCCccccccccccccCCCCCCeEEEEEECCEeeEEeeecCCCCCCccCcEEEEEcCC-CCEEE
Confidence            4457899999999999999887 2          56899999999987  799999999999999999999864 45799


Q ss_pred             EEEEeCCCCCCCceeEEEEEechhhhhh--hcccccCCCCceEEEEeccCCCccccccceeEeeCCeEEEEEeEEecccc
Q 031204           68 LTVYDKDTFSLDDKMGDAEFYITPFLEA--LKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRNVE  145 (164)
Q Consensus        68 i~v~d~~~~~~~~~lG~~~v~l~~l~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~  145 (164)
                      |+|||++.+++|++||++.|++.++..+  ...                                   ..+.|++|.  +
T Consensus       103 ~~V~D~d~~~~dd~iG~~~i~l~~l~~~~~~~~-----------------------------------~~~~W~~L~--~  145 (157)
T 2fk9_A          103 LAVFHETPLGYDHFVANCTLQFQELLRTTGASD-----------------------------------TFEGWVDLE--P  145 (157)
T ss_dssp             EEEEECCSSSSCEEEEEEEEEHHHHHHHHTTCS-----------------------------------EEEEEEECB--S
T ss_pred             EEEEECCCCCCCCEEEEEEEEHHHhhcccCCCC-----------------------------------cccEEEECC--C
Confidence            9999999999999999999999998875  111                                   238999997  5


Q ss_pred             eeeEEEEEEE
Q 031204          146 VGEVKIQLEW  155 (164)
Q Consensus       146 ~G~l~l~l~~  155 (164)
                      .|+|+|+++|
T Consensus       146 ~G~i~l~l~~  155 (157)
T 2fk9_A          146 EGKVFVVITL  155 (157)
T ss_dssp             SCEEEEEEEE
T ss_pred             CcEEEEEEEE
Confidence            9999999998

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1

Probab=99.94  E-value=3e-26  Score=155.52  Aligned_cols=120  Identities=18%  Similarity=0.370  Sum_probs=104.2

Q ss_pred             CCcccEEEEEEEEEeEcCCCCC-CCC-----------CCcEEEEEECCE--EeeeeeeCCCCCeEecEEEEEEeCCCCcE
Q 031204            1 MENLMGLLRVHVLRGVNLAVRD-VVS-----------SDPYVVIKMGKQ--LKTRVVKNNVNPEWNEDLTLSISDSNLPI   66 (164)
Q Consensus         1 ~~~~~g~L~v~v~~a~~L~~~~-~~~-----------~dpyv~v~~~~~--~~T~~~~~t~~P~w~e~~~f~~~~~~~~l   66 (164)
                      |.-..|.|.|+|++|++|++.+ ++.           +||||++.+++.  .+|+++.++.||.|||+|.|.+... ..|
T Consensus         1 m~~~~g~L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~-~~L   79 (136)
T 1gmi_A            1 MVVFNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNG-RKI   79 (136)
T ss_dssp             CCCEEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEE-CEE
T ss_pred             CcccceEEEEEEEeCcCCCCcccccccccccccCCcCcCcEEEEEECCeEeeeeeEECCCcCCccCCEEEEEecCC-CEE
Confidence            6677899999999999999887 433           999999999887  8999999999999999999999755 679


Q ss_pred             EEEEEeCCCCCCCceeEEEEEechhhhhhhcccccCCCCceEEEEeccCCCccccccceeEeeCCeEEEEEeEEecccce
Q 031204           67 KLTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRNVEV  146 (164)
Q Consensus        67 ~i~v~d~~~~~~~~~lG~~~v~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~  146 (164)
                      .|+|||++.+++|++||++.+++.++......                                   ..+.|+.|.  ++
T Consensus        80 ~~~V~d~d~~~~dd~iG~~~i~l~~l~~~~~~-----------------------------------~~~~w~~L~--~~  122 (136)
T 1gmi_A           80 ELAVFHDAPIGYDDFVANCTIQFEELLQNGSR-----------------------------------HFEDWIDLE--PE  122 (136)
T ss_dssp             EEEEEECCSSSSCEEEEEEEEEHHHHTSTTCS-----------------------------------EEEEEEECB--SS
T ss_pred             EEEEEeCCCCCCCCEEEEEEEEHHHhcccCCC-----------------------------------CccEEEEcC--CC
Confidence            99999999998999999999999998764321                                   237899887  58


Q ss_pred             eeEEEEEEEEec
Q 031204          147 GEVKIQLEWIDI  158 (164)
Q Consensus       147 G~l~l~l~~~~~  158 (164)
                      |+|+|+++|...
T Consensus       123 G~i~l~l~~~~~  134 (136)
T 1gmi_A          123 GKVYVIIDLSGS  134 (136)
T ss_dssp             CEEEEEEEEEEE
T ss_pred             eEEEEEEEEEec
Confidence            999999999764

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=99.94  E-value=4.1e-26  Score=154.20  Aligned_cols=93  Identities=31%  Similarity=0.560  Sum_probs=86.5

Q ss_pred             CcccEEEEEEEEEeEcCCCCC-CCCCCcEEEEEECCE-EeeeeeeCCCCCeEecEEEEEEeCCCCcEEEEEEeCCCCCCC
Q 031204            2 ENLMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQ-LKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSLD   79 (164)
Q Consensus         2 ~~~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~~-~~T~~~~~t~~P~w~e~~~f~~~~~~~~l~i~v~d~~~~~~~   79 (164)
                      ..+.|.|.|+|++|++|++.+ .+.+||||++.++++ ++|++++++.||.|||+|.|.+.++...|.|+|||++.++++
T Consensus         9 ~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~i~V~d~d~~~~~   88 (133)
T 2ep6_A            9 VKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHDVLEVTVFDEDGDKPP   88 (133)
T ss_dssp             CCCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEESCTTCEEEEEEEEEETTEEE
T ss_pred             cCCceEEEEEEEeeECCCCCCCCCCcCeEEEEEECCEEEEeeeecCCCCCccccEEEEEecCCCCEEEEEEEECCCCCCC
Confidence            357899999999999999988 789999999999999 999999999999999999999987777899999999999889


Q ss_pred             ceeEEEEEechhhhh
Q 031204           80 DKMGDAEFYITPFLE   94 (164)
Q Consensus        80 ~~lG~~~v~l~~l~~   94 (164)
                      ++||++.+++.++..
T Consensus        89 ~~lG~~~i~l~~l~~  103 (133)
T 2ep6_A           89 DFLGKVAIPLLSIRD  103 (133)
T ss_dssp             EECCBCEEEGGGCCS
T ss_pred             CeeEEEEEEHHHccC
Confidence            999999999998754

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.94  E-value=2.5e-25  Score=151.45  Aligned_cols=122  Identities=23%  Similarity=0.330  Sum_probs=104.2

Q ss_pred             cccEEEEEEEEEeEcCCCCCCCCCCcEEEEEECCE-EeeeeeeCCCCCeEecEEEEEEeCC----CCcEEEEEEeCCCCC
Q 031204            3 NLMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQ-LKTRVVKNNVNPEWNEDLTLSISDS----NLPIKLTVYDKDTFS   77 (164)
Q Consensus         3 ~~~g~L~v~v~~a~~L~~~~~~~~dpyv~v~~~~~-~~T~~~~~t~~P~w~e~~~f~~~~~----~~~l~i~v~d~~~~~   77 (164)
                      ...|.|.|+|++|++|+..+.+.+||||++++.++ ++|++++++.||.|||+|.|.+..+    ...|.|+|||++.++
T Consensus         4 ~~~g~L~v~v~~a~~L~~~~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~~l~i~V~d~d~~~   83 (140)
T 2dmh_A            4 GSSGMLRVIVESASNIPKTKFGKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDFETIG   83 (140)
T ss_dssp             CBCCEEEEEEEEEESCCCCSSSCCCEEEEEECSSCEEECCCCCSCSSCEEEEEEEEECSSCCCCTTCEEEEEEEETTCSS
T ss_pred             CCCcEEEEEEEEeeCCCCCCCCCCCeEEEEEECCEeEEeeeecCCCCCccCcEEEEEecccccCCCCEEEEEEEECCCCC
Confidence            46789999999999999887788999999999988 9999999999999999999999643    466999999999999


Q ss_pred             CCceeEEEEEechhhhhhhcccccCCCCceEEEEeccCCCccccccceeEeeCCeEEEEEeEE---ecc----cceeeEE
Q 031204           78 LDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLR---LRN----VEVGEVK  150 (164)
Q Consensus        78 ~~~~lG~~~v~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---l~~----~~~G~l~  150 (164)
                      ++++||++.+++.++..+...                                     +.|++   |.+    ...|+|+
T Consensus        84 ~~~~lG~~~i~l~~l~~~~~~-------------------------------------~~w~~l~~l~~~~~~~~~G~l~  126 (140)
T 2dmh_A           84 QNKLIGTATVALKDLTGDQSR-------------------------------------SLPYKLISLLNEKGQDTGATID  126 (140)
T ss_dssp             SCCCCEEEEEEGGGTCSSSCE-------------------------------------EEEEEEEEEECTTCCEEEEEEE
T ss_pred             CCceEEEEEEEHHHhccCCCc-------------------------------------eeEEeeeeccCCCCCCCCCEEE
Confidence            999999999999988664322                                     55655   433    3459999


Q ss_pred             EEEEEEecCCC
Q 031204          151 IQLEWIDIPGS  161 (164)
Q Consensus       151 l~l~~~~~~~~  161 (164)
                      |+++|.|.++-
T Consensus       127 l~~~~~p~~~~  137 (140)
T 2dmh_A          127 LVIGYDPPSGP  137 (140)
T ss_dssp             EEEEECCCBSS
T ss_pred             EEEEEECCCCC
Confidence            99999987663

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*

Probab=99.93  E-value=4.8e-25  Score=151.46  Aligned_cols=91  Identities=29%  Similarity=0.503  Sum_probs=83.9

Q ss_pred             CcccEEEEEEEEEeEcCCCCC-CCCCCcEEEEEECCE-EeeeeeeCCCCCeEecEEEEEEeCCCCcEEEEEEeCCCC---
Q 031204            2 ENLMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQ-LKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTF---   76 (164)
Q Consensus         2 ~~~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~~-~~T~~~~~t~~P~w~e~~~f~~~~~~~~l~i~v~d~~~~---   76 (164)
                      ....|.|.|+|++|++|++.+ .+.+||||++.++++ ++|+++.++.||.|||+|.|.+..+...|.|+|||++..   
T Consensus        13 ~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~d~d~~~~~   92 (148)
T 3kwu_A           13 SKWSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSSDRIKVRVLDEDDDIKS   92 (148)
T ss_dssp             --CCEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEEEECCCCCSCSSCEEEEEEEEEECSTTCEEEEEEEECCCSHHH
T ss_pred             cccccEEEEEEEeeeCCCCCCCCCCcCeEEEEEECCEEEECCccCCCCCCCcccEEEEEecCCCCEEEEEEEECCCCccc
Confidence            456799999999999999998 889999999999999 999999999999999999999987777899999999985   


Q ss_pred             --------CCCceeEEEEEechhh
Q 031204           77 --------SLDDKMGDAEFYITPF   92 (164)
Q Consensus        77 --------~~~~~lG~~~v~l~~l   92 (164)
                              +++++||++.+++.++
T Consensus        93 ~~~~~~~~~~~~~lG~~~i~l~~l  116 (148)
T 3kwu_A           93 RVKQRFKRESDDFLGQTIIEVRTL  116 (148)
T ss_dssp             HHHTTTSSCSSEEEEEEEEEGGGC
T ss_pred             cccccccCCCCccEEEEEEEHHHC
Confidence                    7899999999999887

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1

Probab=99.93  E-value=5.6e-25  Score=147.13  Aligned_cols=115  Identities=23%  Similarity=0.423  Sum_probs=100.0

Q ss_pred             cEEEEEEEEEeEcCCCC---C-CCCCCcEEEEEECC---E-EeeeeeeCCCCCeEecEEEEEEeCC-CCcEEEEEEeCCC
Q 031204            5 MGLLRVHVLRGVNLAVR---D-VVSSDPYVVIKMGK---Q-LKTRVVKNNVNPEWNEDLTLSISDS-NLPIKLTVYDKDT   75 (164)
Q Consensus         5 ~g~L~v~v~~a~~L~~~---~-~~~~dpyv~v~~~~---~-~~T~~~~~t~~P~w~e~~~f~~~~~-~~~l~i~v~d~~~   75 (164)
                      .|.|.|+|++|++|+.+   + .+.+||||++.+.+   . ++|++++++.||.|||+|.|.+..+ ...|.|+|||++.
T Consensus         2 ~~~L~v~v~~a~~L~~~~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~d~   81 (126)
T 1rlw_A            2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY   81 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCS
T ss_pred             CcEEEEEEEeeeCCCCCCccccCCCCCCEEEEEEccCCCceEEccccCCCCCCcccceEEEEecCCCCCEEEEEEEECCC
Confidence            48999999999999985   4 68999999999985   5 9999999999999999999999644 4569999999998


Q ss_pred             CCCCceeEEEEEechhhhhhhcccccCCCCceEEEEeccCCCccccccceeEeeCCeEEEEEeEEecccceeeEEEEEEE
Q 031204           76 FSLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRNVEVGEVKIQLEW  155 (164)
Q Consensus        76 ~~~~~~lG~~~v~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~G~l~l~l~~  155 (164)
                      . ++++||++.+++.++..+..                                     .+.|++|.....|+|+++++.
T Consensus        82 ~-~~~~iG~~~i~l~~l~~~~~-------------------------------------~~~~~~L~~~~~g~i~~~le~  123 (126)
T 1rlw_A           82 V-MDETLGTATFTVSSMKVGEK-------------------------------------KEVPFIFNQVTEMVLEMSLEV  123 (126)
T ss_dssp             S-CCEEEEEEEEEGGGSCTTCE-------------------------------------EEEEEEETTTEEEEEEEEEEC
T ss_pred             C-CCceeEEEEEEHHHccCCCc-------------------------------------EEEEEEcCCCceEEEEEEEEe
Confidence            8 59999999999998865432                                     389999998888999998876


Q ss_pred             Ee
Q 031204          156 ID  157 (164)
Q Consensus       156 ~~  157 (164)
                      .|
T Consensus       124 ~~  125 (126)
T 1rlw_A          124 AS  125 (126)
T ss_dssp             CC
T ss_pred             CC
Confidence            53

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1

Probab=99.93  E-value=3.7e-24  Score=150.83  Aligned_cols=125  Identities=22%  Similarity=0.379  Sum_probs=103.0

Q ss_pred             ccEEEEEEEEEeEcCCCC-CCCCCCcEEEEEECCE-EeeeeeeCCCCCeEecEEEEEEeCCCCcEEEEEEeCCCCCCCce
Q 031204            4 LMGLLRVHVLRGVNLAVR-DVVSSDPYVVIKMGKQ-LKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSLDDK   81 (164)
Q Consensus         4 ~~g~L~v~v~~a~~L~~~-~~~~~dpyv~v~~~~~-~~T~~~~~t~~P~w~e~~~f~~~~~~~~l~i~v~d~~~~~~~~~   81 (164)
                      ..++|.|+|++|++|+.. +.+.+||||++.++++ ++|++++++.||.|||+|.|.+. +...|.|+|||++.++++++
T Consensus        34 ~~~~L~V~V~~A~~L~~~~~~~~sDPYv~v~~~~~~~kT~v~~~tlnP~Wne~f~f~v~-~~~~L~~~V~D~d~~~~dd~  112 (173)
T 2nq3_A           34 MKSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVT-PVSKLHFRVWSHQTLKSDVL  112 (173)
T ss_dssp             CCEEEEEEEEEEEECCCC--CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEEC-TTCEEEEEEEECCSSSCCEE
T ss_pred             CceEEEEEEEEeECCCCcccCCCCCeEEEEEECCEEeEccccCCCCCCeECCEEEEEeC-CCCEEEEEEEECCCCCCCce
Confidence            578999999999999944 4566999999999999 99999999999999999999985 57779999999999999999


Q ss_pred             eEEEEEechhhhhhhcccccCCCCceEEEEeccCCCccccccceeEeeCCeEEEEEeEEeccc-----ceeeEEEEEEEE
Q 031204           82 MGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRNV-----EVGEVKIQLEWI  156 (164)
Q Consensus        82 lG~~~v~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~-----~~G~l~l~l~~~  156 (164)
                      ||++.+++.++.........                                ..+.|+.|...     ..|+|++.|.++
T Consensus       113 lG~~~i~l~~l~~~~~~~~~--------------------------------~~~~~~~L~~~~~~~~~~G~L~v~l~~l  160 (173)
T 2nq3_A          113 LGTAALDIYETLKSNNMKLE--------------------------------EVVVTLQLGGDKEPTETIGDLSICLDGL  160 (173)
T ss_dssp             EEEEEEEHHHHHHHTTTEES--------------------------------SEEEEEEEEESSCTTSEEEEEEEEEESE
T ss_pred             EEEEEEEHHHhcccCCCCcc--------------------------------eeEEEEECccCCCCCcccEEEEEEEeee
Confidence            99999999998875422000                                01567777653     579999999999


Q ss_pred             ecCCC
Q 031204          157 DIPGS  161 (164)
Q Consensus       157 ~~~~~  161 (164)
                      ++...
T Consensus       161 ~~~~~  165 (173)
T 2nq3_A          161 QLESE  165 (173)
T ss_dssp             ECC--
T ss_pred             ecchh
Confidence            98654

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A

Probab=99.92  E-value=8.6e-25  Score=150.94  Aligned_cols=94  Identities=27%  Similarity=0.578  Sum_probs=80.2

Q ss_pred             cccEEEEEEEEEeEcCCCCC-CCCCCcEEEEEECC------E-EeeeeeeCCCCCeEecEEEEEEeCCCCcEEEEEEeCC
Q 031204            3 NLMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGK------Q-LKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKD   74 (164)
Q Consensus         3 ~~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~------~-~~T~~~~~t~~P~w~e~~~f~~~~~~~~l~i~v~d~~   74 (164)
                      ...+.|+|+|++|++|+..+ .+.+||||++.+.+      . ++|++++++.||.|||+|.|.+......|.|+|||++
T Consensus        17 ~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~l~~~V~d~d   96 (153)
T 3b7y_A           17 ENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHPQQHRLLFEVFDEN   96 (153)
T ss_dssp             TTCEEEEEEEEEEESCC-------CCEEEEEEEEETTTEEEEEEECCCCSSCSSCCCCEEEEEEECTTTCEEEEEEEECC
T ss_pred             CCccEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCccceeeeCccccCCCCCCCCCEEEEEecCCCCEEEEEEEECC
Confidence            46789999999999999988 78999999999973      4 8999999999999999999999877777999999999


Q ss_pred             CCCCCceeEEEEEechhhhhhh
Q 031204           75 TFSLDDKMGDAEFYITPFLEAL   96 (164)
Q Consensus        75 ~~~~~~~lG~~~v~l~~l~~~~   96 (164)
                      .++++++||++.+++.++..+.
T Consensus        97 ~~~~d~~iG~~~i~l~~l~~~~  118 (153)
T 3b7y_A           97 RLTRDDFLGQVDVPLYPLPTEN  118 (153)
T ss_dssp             SSSCCEEEEEEEEECCSCCBCC
T ss_pred             CCcCCCeeEEEEEEHHHcccCC
Confidence            9989999999999999887643

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}

Probab=99.92  E-value=2.6e-24  Score=151.95  Aligned_cols=126  Identities=22%  Similarity=0.440  Sum_probs=95.9

Q ss_pred             CcccEEEEEEEEEeEcCCCCC-CCCCCcEEEEEECC------E-EeeeeeeCCCCCeEecEEEEEEeCCCCcEEEEEEeC
Q 031204            2 ENLMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGK------Q-LKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDK   73 (164)
Q Consensus         2 ~~~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~------~-~~T~~~~~t~~P~w~e~~~f~~~~~~~~l~i~v~d~   73 (164)
                      ....|.|.|+|++|++|+..+ .+.+||||++.+.+      . ++|++++++.||.|||+|.|.+......|.|+|||+
T Consensus         4 ~~~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~L~~~V~d~   83 (176)
T 3m7f_B            4 NDDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLPQRHRILFEVFDE   83 (176)
T ss_dssp             CTTCEEEEEEEEEEESCC---CCCCCCEEEEEEEEETTTEEEEEEECCCCSSCSSCEEEEEEEEEECTTTCEEEEEEEEC
T ss_pred             CCCcEEEEEEEEEeeCCCCcCCCCCcCcEEEEEEECCCCCcccceeCceECCCCCCcccceEEEEEcCCCCEEEEEEEEC
Confidence            357899999999999999988 78999999999975      5 899999999999999999999986667899999999


Q ss_pred             CCCCCCceeEEEEEechhhhhhhcccccCCCCceEEEEeccCCCccccccceeEeeCCeEEEEEeEEecc-----cceee
Q 031204           74 DTFSLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRN-----VEVGE  148 (164)
Q Consensus        74 ~~~~~~~~lG~~~v~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~-----~~~G~  148 (164)
                      +.++++++||++.++|.++.......       .                        ......|+.|..     ...|+
T Consensus        84 d~~~~d~~lG~~~i~l~~l~~~~~~~-------~------------------------~~~~~~w~~L~~~~~~~~~~G~  132 (176)
T 3m7f_B           84 NRLTRDDFLGQVDVPLYPLPTENPRM-------E------------------------RPYTFKDFVLHPRSHKSRVKGY  132 (176)
T ss_dssp             C----CEEEEEEEEESCSCCBC-------------------------------------CCCCEEEECBCSSTTCCCCSE
T ss_pred             CCCCCCcEEEEEEEEHHHccccCCcc-------c------------------------ccccccEEEccccCCCCccCEE
Confidence            99989999999999999887643210       0                        000014666653     24799


Q ss_pred             EEEEEEEEec
Q 031204          149 VKIQLEWIDI  158 (164)
Q Consensus       149 l~l~l~~~~~  158 (164)
                      |+|++.|+|.
T Consensus       133 l~l~l~~~p~  142 (176)
T 3m7f_B          133 LRLKMTYLPK  142 (176)
T ss_dssp             EEEEEEECC-
T ss_pred             EEEEEEEEeC
Confidence            9999999986

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A

Probab=99.90  E-value=1.1e-22  Score=137.07  Aligned_cols=91  Identities=24%  Similarity=0.417  Sum_probs=81.1

Q ss_pred             ccEEEEEEEEEeEcCCCCC-CCCCCcEEEEEECC--E-EeeeeeeCCCCCeEecEEEEEEeCCCCcEEEEEEeCCCCCC-
Q 031204            4 LMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGK--Q-LKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSL-   78 (164)
Q Consensus         4 ~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~--~-~~T~~~~~t~~P~w~e~~~f~~~~~~~~l~i~v~d~~~~~~-   78 (164)
                      ....|+|+|++|++|++.+ .+.+||||++.+.+  + ++|++++++.||.|||+|.|.+.... .|.|+|||++.+++ 
T Consensus         3 ~~~~L~V~v~~a~~L~~~d~~g~sDpyv~v~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~-~l~~~v~d~d~~~~~   81 (132)
T 3pyc_A            3 EFIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVGKTD-SITISVWNHKKIHKK   81 (132)
T ss_dssp             SEEEEEEEEEEEESCCCCSTTCCCCEEEEEEETTTCCEEECCCCSSCSSCEEEEEEEEEEETTC-CEEEEEEEGGGTTSS
T ss_pred             CeEEEEEEEEEeECCCCCCCCCCcCeEEEEEECCCCceEECCccCCCCCCCccCEEEEEeCCCC-EEEEEEEECCCCCCC
Confidence            3568999999999999998 88999999999975  4 99999999999999999999997654 59999999998865 


Q ss_pred             --CceeEEEEEechhhhhh
Q 031204           79 --DDKMGDAEFYITPFLEA   95 (164)
Q Consensus        79 --~~~lG~~~v~l~~l~~~   95 (164)
                        |++||++.+++.++...
T Consensus        82 ~~d~~lG~~~i~l~~l~~~  100 (132)
T 3pyc_A           82 QGAGFLGCVRLLSNAISRL  100 (132)
T ss_dssp             TTTTEEEEEEECHHHHHHH
T ss_pred             CCCCceEEEEEeHHHhhcc
Confidence              89999999999988543

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}

Probab=99.89  E-value=2.5e-22  Score=135.89  Aligned_cols=92  Identities=23%  Similarity=0.317  Sum_probs=80.3

Q ss_pred             ccEEEEEEEEEeEcCCCCCCCCCCcEEEEEEC-----CE-EeeeeeeCCCCCeEecEEEEE-EeC---CCCcEEEEEEeC
Q 031204            4 LMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMG-----KQ-LKTRVVKNNVNPEWNEDLTLS-ISD---SNLPIKLTVYDK   73 (164)
Q Consensus         4 ~~g~L~v~v~~a~~L~~~~~~~~dpyv~v~~~-----~~-~~T~~~~~t~~P~w~e~~~f~-~~~---~~~~l~i~v~d~   73 (164)
                      ..+.|.|+|++|++|+....+.+||||++++.     .. ++|++++++.||.|||+|.|. +..   ....|.|+|||+
T Consensus        18 ~~~~L~V~V~~a~~L~~~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~~v~~~~l~~~~L~~~V~d~   97 (134)
T 2b3r_A           18 RNGTLFIMVMHIKDLVTEDGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKETLRQRELQLSVLSA   97 (134)
T ss_dssp             ETTEEEEEEEEEECCCCTTSCCCCEEEEEEEESCSSSCCCEECCCCCSCSSCEEEEEEEEESCCHHHHTTCEEEEEEEEC
T ss_pred             cCCEEEEEEEEeeCCCCCCCCCCCeEEEEEEEcCCCCCceecCCcCcCCCCCCCccEEEECCcCHHHhCcCEEEEEEEEC
Confidence            46799999999999997337899999999982     34 999999999999999999999 653   346799999999


Q ss_pred             CCCCCCceeEEEEEechhhhhh
Q 031204           74 DTFSLDDKMGDAEFYITPFLEA   95 (164)
Q Consensus        74 ~~~~~~~~lG~~~v~l~~l~~~   95 (164)
                      +.++++++||++.+++.++..+
T Consensus        98 d~~~~~~~lG~~~i~l~~l~~~  119 (134)
T 2b3r_A           98 ESLRENFFLGGITLPLKDFNLS  119 (134)
T ss_dssp             CSSSCCEEEEEEEEEGGGSCTT
T ss_pred             CCCCCCcEEEEEEEEhhhccCC
Confidence            9998999999999999988654

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.88  E-value=9.3e-23  Score=140.21  Aligned_cols=91  Identities=34%  Similarity=0.488  Sum_probs=81.8

Q ss_pred             cEEEEEEEEEeEcCCCCC-CCCCCcEEEEEECC-----E-EeeeeeeCCCCCeEecEEEEEEeCC--CCcEEEEEEeCCC
Q 031204            5 MGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGK-----Q-LKTRVVKNNVNPEWNEDLTLSISDS--NLPIKLTVYDKDT   75 (164)
Q Consensus         5 ~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~-----~-~~T~~~~~t~~P~w~e~~~f~~~~~--~~~l~i~v~d~~~   75 (164)
                      .+.|.|+|++|++|+..+ .+.+||||++++.+     . ++|++++++.||.|||+|.|.+...  ...|.|+|||++.
T Consensus        30 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~  109 (149)
T 1a25_A           30 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDL  109 (149)
T ss_dssp             SSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECCS
T ss_pred             CCEEEEEEEEeeCCCCCCCCCCcCeEEEEEEECCCCCcceEecceeCCCCCCcCCcEEEEEeccccCCCEEEEEEEECCC
Confidence            478999999999999988 78999999999973     3 9999999999999999999999754  3569999999999


Q ss_pred             CCCCceeEEEEEechhhhhh
Q 031204           76 FSLDDKMGDAEFYITPFLEA   95 (164)
Q Consensus        76 ~~~~~~lG~~~v~l~~l~~~   95 (164)
                      ++++++||++.+++.++..+
T Consensus       110 ~~~~~~iG~~~i~l~~l~~~  129 (149)
T 1a25_A          110 TSRNDFMGSLSFGISELQKA  129 (149)
T ss_dssp             SSCCEEEEEEEEEHHHHTTC
T ss_pred             CCCCCEEEEEEEEHHHhCcC
Confidence            98999999999999988653

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.87  E-value=7.6e-22  Score=136.09  Aligned_cols=92  Identities=28%  Similarity=0.423  Sum_probs=81.7

Q ss_pred             ccEEEEEEEEEeEcCCCCC-CCCCCcEEEEEEC---CE-EeeeeeeCCCCCeEecEEEEEEeCC---CCcEEEEEEeCCC
Q 031204            4 LMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMG---KQ-LKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTVYDKDT   75 (164)
Q Consensus         4 ~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~---~~-~~T~~~~~t~~P~w~e~~~f~~~~~---~~~l~i~v~d~~~   75 (164)
                      ..+.|.|+|++|++|+..+ .+.+||||++.+.   .. ++|++++++.||.|||+|.|.+...   ...|.|+|||++.
T Consensus        40 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~  119 (152)
T 1rsy_A           40 QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDR  119 (152)
T ss_dssp             TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCS
T ss_pred             CCCEEEEEEEEeECCCCccCCCCcCeEEEEEEEcCCCceEeccccCCCCCCcCcccEEEeecHHHcCCCEEEEEEEECCC
Confidence            4678999999999999988 7899999999994   34 9999999999999999999988532   4679999999999


Q ss_pred             CCCCceeEEEEEechhhhhh
Q 031204           76 FSLDDKMGDAEFYITPFLEA   95 (164)
Q Consensus        76 ~~~~~~lG~~~v~l~~l~~~   95 (164)
                      ++++++||++.+++.++..+
T Consensus       120 ~~~~~~iG~~~i~l~~l~~~  139 (152)
T 1rsy_A          120 FSKHDIIGEFKVPMNTVDFG  139 (152)
T ss_dssp             SSCCEEEEEEEEEGGGCCCS
T ss_pred             CCCCcEEEEEEEEchhccCC
Confidence            98999999999999988553

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B

Probab=99.87  E-value=6e-21  Score=154.22  Aligned_cols=122  Identities=31%  Similarity=0.465  Sum_probs=105.1

Q ss_pred             cccEEEEEEEEEeEcCCCCC-CCCCCcEEEEEECCE-EeeeeeeCCCCCeEecEEEEEEeCCC-CcEEEEEEeCCCCCCC
Q 031204            3 NLMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQ-LKTRVVKNNVNPEWNEDLTLSISDSN-LPIKLTVYDKDTFSLD   79 (164)
Q Consensus         3 ~~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~~-~~T~~~~~t~~P~w~e~~~f~~~~~~-~~l~i~v~d~~~~~~~   79 (164)
                      ...|+|.|+|++|++|++.+ +|.+||||++.+++. ++|++++++.||.|||+|.|.+..+. ..|.|+|||++.+++|
T Consensus       384 ~~~~~l~v~v~~a~~L~~~d~~~~sdpyv~v~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~~~~~~l~~~v~d~d~~~~~  463 (510)
T 3jzy_A          384 SGIGRLMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFIKDLYQDVLCLTLFDRDQFSPD  463 (510)
T ss_dssp             --CEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEESCTTTCEEEEEEEECCSSSSC
T ss_pred             CCCceEEEEeceeecCCCCCCCCCCCeEEEEEECCeeccCCccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCCCC
Confidence            35689999999999999998 889999999999998 99999999999999999999997654 5699999999999999


Q ss_pred             ceeEEEEEechhhhhhhcccccCCCCceEEEEeccCCCccccccceeEeeCCeEEEEEeEEecccceeeEEEEEEEEe
Q 031204           80 DKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRNVEVGEVKIQLEWID  157 (164)
Q Consensus        80 ~~lG~~~v~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~G~l~l~l~~~~  157 (164)
                      ++||++.+++.++..+...                               .+  ..+.|+.+.+..+|+|+|++++.-
T Consensus       464 d~lG~~~~~l~~l~~~~~~-------------------------------~~--~~~~~~~l~~~~~G~i~l~~~l~l  508 (510)
T 3jzy_A          464 DFLGRTEIPVAKIRTEQES-------------------------------KG--PMTRRLLLHEVPTGEVWVRFDLQL  508 (510)
T ss_dssp             CEEEEEEEEHHHHHHHHHH-------------------------------HC--SCCEEEECBSSSSCEEEEEEEEEE
T ss_pred             CceEEEEEEHHHhccccCC-------------------------------CC--ceeeeecCCCCCCceEEEEEEEEE
Confidence            9999999999999875431                               00  126789999999999999887643

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0

Probab=99.87  E-value=1.8e-21  Score=134.42  Aligned_cols=91  Identities=23%  Similarity=0.408  Sum_probs=80.6

Q ss_pred             ccEEEEEEEEEeEcCCCCCCCCCCcEEEEEECC-----E-EeeeeeeCCCCCeEecEEEEEEe--CCCCcEEEEEEeCCC
Q 031204            4 LMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGK-----Q-LKTRVVKNNVNPEWNEDLTLSIS--DSNLPIKLTVYDKDT   75 (164)
Q Consensus         4 ~~g~L~v~v~~a~~L~~~~~~~~dpyv~v~~~~-----~-~~T~~~~~t~~P~w~e~~~f~~~--~~~~~l~i~v~d~~~   75 (164)
                      ..+.|.|+|++|++|+..+.+.+||||++.+.+     . ++|++++++.||.|||+|.|.+.  .....|.|+|||++.
T Consensus        25 ~~~~L~V~v~~a~~L~~~d~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~  104 (153)
T 3fbk_A           25 QDRVLLLHIIEGKGLISKQPGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQEEDDQKRLLVTVWNRAS  104 (153)
T ss_dssp             SSSEEEEEEEEEESCCCCSSSCCCEEEEEEEESCSCCTTCEECCCCTTCSSCEEEEEEEEECCGGGTTSEEEEEEEECCS
T ss_pred             CCCEEEEEEEEeeCCCCCCCCCCCEEEEEEEEcCCCCccEEeccccCCCCCCccccEEEEecccHHhCCEEEEEEEeCCC
Confidence            568899999999999998878899999999842     3 99999999999999999999983  344569999999999


Q ss_pred             CCC-CceeEEEEEechhhhh
Q 031204           76 FSL-DDKMGDAEFYITPFLE   94 (164)
Q Consensus        76 ~~~-~~~lG~~~v~l~~l~~   94 (164)
                      +++ +++||++.+++.++..
T Consensus       105 ~~~~d~~lG~~~i~l~~l~~  124 (153)
T 3fbk_A          105 QSRQSGLIGCMSFGVKSLLT  124 (153)
T ss_dssp             SGGGCEEEEEEEEEHHHHTC
T ss_pred             CCCCCcEEEEEEEEHHHhcC
Confidence            876 8999999999999864

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*

Probab=99.86  E-value=7.9e-22  Score=134.58  Aligned_cols=93  Identities=28%  Similarity=0.412  Sum_probs=82.5

Q ss_pred             ccEEEEEEEEEeEcCCCCC-CCCCCcEEEEEEC---CE-EeeeeeeCCCCCeEecEEEEEEeCC---CCcEEEEEEeCCC
Q 031204            4 LMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMG---KQ-LKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTVYDKDT   75 (164)
Q Consensus         4 ~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~---~~-~~T~~~~~t~~P~w~e~~~f~~~~~---~~~l~i~v~d~~~   75 (164)
                      ..+.|.|+|++|++|+..+ .+.+||||++++.   .. ++|++++++.||.|||+|.|.+...   ...|.|+|||++.
T Consensus        32 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~  111 (143)
T 3f04_A           32 QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDR  111 (143)
T ss_dssp             TTTEEEEEEEEEECCCCBGGGBCCCEEEEEEEESCCSCCEECCCCCSCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCS
T ss_pred             CCCEEEEEEEEecCCCCCCCCCCcCcEEEEEEECCCCccEECccCcCCCCCcCcCeEEEeecHhhcCCCEEEEEEEeCCC
Confidence            5678999999999999988 7899999999993   34 9999999999999999999998633   3679999999999


Q ss_pred             CCCCceeEEEEEechhhhhhh
Q 031204           76 FSLDDKMGDAEFYITPFLEAL   96 (164)
Q Consensus        76 ~~~~~~lG~~~v~l~~l~~~~   96 (164)
                      ++++++||++.+++.++..+.
T Consensus       112 ~~~~~~iG~~~i~l~~l~~~~  132 (143)
T 3f04_A          112 FSKHDIIGEFKVPMNTVDFGH  132 (143)
T ss_dssp             SSCCEEEEEEEEEGGGCCTTS
T ss_pred             CCCCceEEEEEEEHHHccCCC
Confidence            999999999999999886653

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.86  E-value=1.4e-21  Score=133.07  Aligned_cols=93  Identities=28%  Similarity=0.434  Sum_probs=81.8

Q ss_pred             ccEEEEEEEEEeEcCCCCC-CCCCCcEEEEEECC---E-EeeeeeeCCCCCeEecEEEEEEeC----CCCcEEEEEEeCC
Q 031204            4 LMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGK---Q-LKTRVVKNNVNPEWNEDLTLSISD----SNLPIKLTVYDKD   74 (164)
Q Consensus         4 ~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~---~-~~T~~~~~t~~P~w~e~~~f~~~~----~~~~l~i~v~d~~   74 (164)
                      ..+.|.|+|++|++|+..+ .+.+||||++++.+   . ++|++++++.||.|||+|.|.+..    ....|.|+|||++
T Consensus        24 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d  103 (141)
T 2d8k_A           24 QESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYD  103 (141)
T ss_dssp             SSCCEEEEEEEEESCCCCSSSSCCCEEEEEEEESCCSSEEECCCCTTCSSCCCCEEEEECSCCHHHHTTSEEEEEEEECC
T ss_pred             CCCEEEEEEEEeECCCCCCCCCCCCcEEEEEEECCCCccEeCceEcCCCCCccccEEEECccCHHHcccCEEEEEEEECC
Confidence            5688999999999999988 78999999999952   3 999999999999999999998632    2466999999999


Q ss_pred             CCCCCceeEEEEEechhhhhhh
Q 031204           75 TFSLDDKMGDAEFYITPFLEAL   96 (164)
Q Consensus        75 ~~~~~~~lG~~~v~l~~l~~~~   96 (164)
                      .++++++||++.+++.++..+.
T Consensus       104 ~~~~~~~iG~~~i~l~~l~~~~  125 (141)
T 2d8k_A          104 RFSRNDPIGEVSIPLNKVDLTQ  125 (141)
T ss_dssp             SSSSCEEEEEEEEETTTSCTTS
T ss_pred             CCCCCcEEEEEEEEhhhhcCCC
Confidence            9989999999999999886643

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}

Probab=99.86  E-value=1.1e-21  Score=134.70  Aligned_cols=95  Identities=27%  Similarity=0.397  Sum_probs=83.3

Q ss_pred             ccEEEEEEEEEeEcCCCCC--CCCCCcEEEEEECC-----E-EeeeeeeCCCCCeEecEEEEEEeCC---CCcEEEEEEe
Q 031204            4 LMGLLRVHVLRGVNLAVRD--VVSSDPYVVIKMGK-----Q-LKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTVYD   72 (164)
Q Consensus         4 ~~g~L~v~v~~a~~L~~~~--~~~~dpyv~v~~~~-----~-~~T~~~~~t~~P~w~e~~~f~~~~~---~~~l~i~v~d   72 (164)
                      ..+.|.|+|++|++|+..+  .+.+||||++.+.+     . ++|++++++.||.|||+|.|.+...   ...|.|+|||
T Consensus        21 ~~~~L~V~v~~a~~L~~~d~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~L~~~V~d  100 (148)
T 3fdw_A           21 QTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEIPESLLAQRTLQFSVWH  100 (148)
T ss_dssp             TTTEEEEEEEEEESCCCSBTTTTBCCEEEEEEEETCCSGGGEEECCCCSSCSSCEEEEEEEEECCSTTGGGCEEEEEEEE
T ss_pred             CCCEEEEEEEEecCCCCcccCCCCCCeEEEEEEEcCCcccCccccccCCCCCCCcEeeEEEEEeChhHhCceEEEEEEEE
Confidence            4688999999999999877  67899999999972     2 8999999999999999999998754   3459999999


Q ss_pred             CCCCCCCceeEEEEEechhhhhhhcc
Q 031204           73 KDTFSLDDKMGDAEFYITPFLEALKM   98 (164)
Q Consensus        73 ~~~~~~~~~lG~~~v~l~~l~~~~~~   98 (164)
                      ++.++++++||++.+++.++..+...
T Consensus       101 ~d~~~~~~~iG~~~i~l~~l~~~~~~  126 (148)
T 3fdw_A          101 HGRFGRNTFLGEAEIQMDSWKLDKKL  126 (148)
T ss_dssp             ECGGGCEEEEEEEEEEHHHHHHHCCS
T ss_pred             CCCCcCCcEEEEEEEEcccccccCCc
Confidence            99998999999999999999876533

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=99.86  E-value=6.7e-21  Score=143.45  Aligned_cols=92  Identities=27%  Similarity=0.409  Sum_probs=82.1

Q ss_pred             ccEEEEEEEEEeEcCCCCC-CCCCCcEEEEEECC---E-EeeeeeeCCCCCeEecEEEEEEeCC---CCcEEEEEEeCCC
Q 031204            4 LMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGK---Q-LKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTVYDKDT   75 (164)
Q Consensus         4 ~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~---~-~~T~~~~~t~~P~w~e~~~f~~~~~---~~~l~i~v~d~~~   75 (164)
                      ..+.|.|+|++|++|+.++ .+.+||||++.+.+   . ++|++++++.||.|||+|.|.+...   ...|.|+|||++.
T Consensus        17 ~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~wne~f~f~v~~~~~~~~~l~~~V~d~d~   96 (284)
T 2r83_A           17 QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELAGKTLVMAVYDFDR   96 (284)
T ss_dssp             TTTEEEEEEEEEECCCCCSSSSSCCEEEEEEEETCTTSCEECCCCCSCSSCEEEEEEEECCCGGGCTTCEEEEEEEECCS
T ss_pred             CCCEEEEEEEEeeCCCCCCCCCCCCeEEEEEEEcCCCceEeCCcccCCCCCeeCceEEEEechHHhCcCEEEEEEEECCC
Confidence            5689999999999999988 78999999999964   3 8999999999999999999998642   3579999999999


Q ss_pred             CCCCceeEEEEEechhhhhh
Q 031204           76 FSLDDKMGDAEFYITPFLEA   95 (164)
Q Consensus        76 ~~~~~~lG~~~v~l~~l~~~   95 (164)
                      ++++++||++.+++.++..+
T Consensus        97 ~~~~~~lG~~~i~l~~l~~~  116 (284)
T 2r83_A           97 FSKHDIIGEFKVPMNTVDFG  116 (284)
T ss_dssp             SSCCCEEEEEEEEGGGCCCS
T ss_pred             CCCCceeEEEEEcchhcccC
Confidence            98999999999999988654

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens}

Probab=99.86  E-value=7.5e-22  Score=136.69  Aligned_cols=90  Identities=14%  Similarity=0.175  Sum_probs=81.3

Q ss_pred             ccEEEEEEEEEeEcCCCCC-CCCCCcEEEEEECC---E----EeeeeeeCCCCCeEecEEEEEEeCC---CCcEEEEEEe
Q 031204            4 LMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGK---Q----LKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTVYD   72 (164)
Q Consensus         4 ~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~---~----~~T~~~~~t~~P~w~e~~~f~~~~~---~~~l~i~v~d   72 (164)
                      ..+.|+|+|++|++|++++ .+.+||||++++.+   .    ++|++++++.||.|||+|.|.+...   ...|.|+|||
T Consensus        41 ~~~~L~V~Vi~a~~L~~~d~~g~sDPyVkv~l~~~~~~~~~~~kT~v~~~tlnP~wnE~F~f~v~~~~l~~~~L~~~V~d  120 (155)
T 2z0u_A           41 KNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVSMSYPALHQKTLRVDVCT  120 (155)
T ss_dssp             TTTEEEEEEEEEECGGGTCCSCCSEEEEEEEEESCSCHHHHEEECCCEECCSSEEEEEEEEEECCHHHHHHCEEEEEEEE
T ss_pred             CCCEEEEEEEEccCcCCcccCCCCCEEEEEEEecCCCCCccceeCCcCCCCCCCccccEEEEEcCHHHhCcCEEEEEEEE
Confidence            4678999999999999998 88999999999965   2    9999999999999999999998642   3579999999


Q ss_pred             CCCCCCCceeEEEEEechhhh
Q 031204           73 KDTFSLDDKMGDAEFYITPFL   93 (164)
Q Consensus        73 ~~~~~~~~~lG~~~v~l~~l~   93 (164)
                      ++.++++++||++.+++.++.
T Consensus       121 ~d~~~~~d~iG~~~i~l~~l~  141 (155)
T 2z0u_A          121 TDRSHLEECLGGAQISLAEVC  141 (155)
T ss_dssp             ECTTSCEEEEEEEEEECTTSC
T ss_pred             CCCCCCCcEEEEEEEEHHHcc
Confidence            999999999999999999885

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.86  E-value=1.9e-21  Score=130.35  Aligned_cols=91  Identities=23%  Similarity=0.377  Sum_probs=75.5

Q ss_pred             ccEEEEEEEEEeEcCCCCC-CCCCCcEEEEEEC-----CE-EeeeeeeCCCCCeEecEEEEEEeC----CCCcEEEEEEe
Q 031204            4 LMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMG-----KQ-LKTRVVKNNVNPEWNEDLTLSISD----SNLPIKLTVYD   72 (164)
Q Consensus         4 ~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~-----~~-~~T~~~~~t~~P~w~e~~~f~~~~----~~~~l~i~v~d   72 (164)
                      ..+.|.|+|++|++|+..+ .+.+||||++.+.     .. ++|++++++.||.|||+|.|.+..    ....|.|+|||
T Consensus        16 ~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~~~V~d   95 (129)
T 2bwq_A           16 VGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWD   95 (129)
T ss_dssp             TTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEEEE
T ss_pred             CCCEEEEEEEEeeCCCCCCCCCCCCCEEEEEEecCCCCCcceecccccCCCCCccccEEEEccCCHHHhcCCeEEEEEEE
Confidence            4588999999999999988 7889999999993     33 999999999999999999999532    23579999999


Q ss_pred             CCCCCC--CceeEEEEEechhhhh
Q 031204           73 KDTFSL--DDKMGDAEFYITPFLE   94 (164)
Q Consensus        73 ~~~~~~--~~~lG~~~v~l~~l~~   94 (164)
                      ++.+++  +++||++.+++.++..
T Consensus        96 ~d~~~~~~~~~lG~~~i~l~~l~~  119 (129)
T 2bwq_A           96 QARVREEESEFLGEILIELETALL  119 (129)
T ss_dssp             C-------CEEEEEEEEEGGGCCC
T ss_pred             CCcCcCcCCceeEEEEEEccccCC
Confidence            999876  9999999999998765

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.86  E-value=4.4e-22  Score=135.61  Aligned_cols=92  Identities=32%  Similarity=0.498  Sum_probs=80.9

Q ss_pred             cEEEEEEEEEeEcCCCCC-CCCCCcEEEEEECC--------------E-EeeeeeeCCCCCeEecEEEEE-EeC---CCC
Q 031204            5 MGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGK--------------Q-LKTRVVKNNVNPEWNEDLTLS-ISD---SNL   64 (164)
Q Consensus         5 ~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~--------------~-~~T~~~~~t~~P~w~e~~~f~-~~~---~~~   64 (164)
                      .|.|.|+|++|++|+.++ .+.+||||++++.+              . ++|++++++.||.|||+|.|. +..   ...
T Consensus        17 ~~~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~l~~~   96 (142)
T 1rh8_A           17 LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKK   96 (142)
T ss_dssp             TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTC
T ss_pred             CCEEEEEEEEecCCCCCCCCCCCCceEEEEEecCCCcccccccccccceeeccccCCCCCCCCCCEEEECCcCHHHccCC
Confidence            478999999999999998 88999999999985              3 789999999999999999997 532   345


Q ss_pred             cEEEEEEeCCCCCCCceeEEEEEechhhhhhh
Q 031204           65 PIKLTVYDKDTFSLDDKMGDAEFYITPFLEAL   96 (164)
Q Consensus        65 ~l~i~v~d~~~~~~~~~lG~~~v~l~~l~~~~   96 (164)
                      .|.|+|||++.++++++||++.+++.++....
T Consensus        97 ~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~  128 (142)
T 1rh8_A           97 TLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLD  128 (142)
T ss_dssp             EEEEEEEEECSSSCEEEEEEEEEETTSCGGGT
T ss_pred             EEEEEEEECCCCCCCceEEEEEEeccccccCC
Confidence            79999999999989999999999999886643

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A

Probab=99.85  E-value=2.4e-21  Score=132.03  Aligned_cols=93  Identities=26%  Similarity=0.493  Sum_probs=82.4

Q ss_pred             ccEEEEEEEEEeEcCCCCC-CCCCCcEEEEEECC-----E-EeeeeeeCCCCCeEecEEEEE-EeCC---CCcEEEEEEe
Q 031204            4 LMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGK-----Q-LKTRVVKNNVNPEWNEDLTLS-ISDS---NLPIKLTVYD   72 (164)
Q Consensus         4 ~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~-----~-~~T~~~~~t~~P~w~e~~~f~-~~~~---~~~l~i~v~d   72 (164)
                      ..+.|.|+|++|++|+..+ .+.+||||++++.+     . ++|++++++.||.|||+|.|. +...   ...|.|+|||
T Consensus        27 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d  106 (142)
T 2chd_A           27 DNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCD  106 (142)
T ss_dssp             GGTEEEEEEEEEESCCCCCTTSCCCEEEEEEEESCCSGGGEEECCCCCSCSSCEEEEEEEEESCCHHHHHHCEEEEEEEE
T ss_pred             CCCEEEEEEEEecCCCCCCCCCCCCCEEEEEEEcCCCCcceeeCCcCCCCCCCcCcCEEEEcccCHHHccCCEEEEEEEE
Confidence            5678999999999999998 78999999999975     3 999999999999999999998 5422   2579999999


Q ss_pred             CCCCCCCceeEEEEEechhhhhhh
Q 031204           73 KDTFSLDDKMGDAEFYITPFLEAL   96 (164)
Q Consensus        73 ~~~~~~~~~lG~~~v~l~~l~~~~   96 (164)
                      ++.++++++||++.+++.++..+.
T Consensus       107 ~d~~~~d~~iG~~~i~l~~l~~~~  130 (142)
T 2chd_A          107 EDKFGHNEFIGETRFSLKKLKANQ  130 (142)
T ss_dssp             ECTTSCEEEEEEEEEEGGGCCTTC
T ss_pred             CCCCCCCcEEEEEEEEHHHcCCCC
Confidence            999989999999999999987654

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus}

Probab=99.85  E-value=3.4e-21  Score=135.37  Aligned_cols=92  Identities=22%  Similarity=0.350  Sum_probs=81.4

Q ss_pred             ccEEEEEEEEEeEcCCCCC--CCCCCcEEEEEECC-----E-EeeeeeeCCCCCeEecEEEEEEeCCCCcEEEEEE-eCC
Q 031204            4 LMGLLRVHVLRGVNLAVRD--VVSSDPYVVIKMGK-----Q-LKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVY-DKD   74 (164)
Q Consensus         4 ~~g~L~v~v~~a~~L~~~~--~~~~dpyv~v~~~~-----~-~~T~~~~~t~~P~w~e~~~f~~~~~~~~l~i~v~-d~~   74 (164)
                      ..|.|.|+|++|++|+.++  .+.+||||++++.+     . ++|++++++.||.|||+|.|.+......|.|+|| |++
T Consensus        28 ~~~~L~V~v~~a~~L~~~d~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~L~~~V~~d~d  107 (171)
T 2q3x_A           28 KKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDESPQGKVLQVIVWGDYG  107 (171)
T ss_dssp             ETTEEEEEEEEEESCCCCC---CCCEEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEECSSCCTTEEEEEEEEEECS
T ss_pred             CCCEEEEEEEEeeCCCCCCcCCCCCCceEEEEEECCCccccceeCccCCCCCCCCCCcEEEEEecCCCCEEEEEEEEcCC
Confidence            3578999999999999988  58999999999863     2 8999999999999999999998766667999999 999


Q ss_pred             CCCCCceeEEEEEechhhhhh
Q 031204           75 TFSLDDKMGDAEFYITPFLEA   95 (164)
Q Consensus        75 ~~~~~~~lG~~~v~l~~l~~~   95 (164)
                      .++++++||++.+++.++..+
T Consensus       108 ~~~~d~~iG~~~i~l~~l~~~  128 (171)
T 2q3x_A          108 RMDHKCFMGVAQILLEELDLS  128 (171)
T ss_dssp             TTCSSEEEEEEEECGGGSCTT
T ss_pred             CCCCCCEEEEEEEEHHHcccC
Confidence            998999999999999988653

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.85  E-value=1.5e-21  Score=132.70  Aligned_cols=91  Identities=23%  Similarity=0.377  Sum_probs=79.4

Q ss_pred             ccEEEEEEEEEeEcCCCCC-CCCCCcEEEEEEC-----CE-EeeeeeeCCCCCeEecEEEEEEeC-C---CCcEEEEEEe
Q 031204            4 LMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMG-----KQ-LKTRVVKNNVNPEWNEDLTLSISD-S---NLPIKLTVYD   72 (164)
Q Consensus         4 ~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~-----~~-~~T~~~~~t~~P~w~e~~~f~~~~-~---~~~l~i~v~d   72 (164)
                      ..+.|.|+|++|++|+.++ .+.+||||++++.     .. ++|++++++.||.|||+|.|.+.. .   ...|.|+|||
T Consensus        19 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d   98 (141)
T 1v27_A           19 VGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWD   98 (141)
T ss_dssp             TTTEEEEEEEEEESCCCCSSSCCCCEEEECCCSSCCSSSSCCBCCCCSSCSSCCCCCCCEECSCCTTGGGTCEEEEEEEE
T ss_pred             CCCEEEEEEEEccCCCCcCCCCCCCCEEEEEEecCCCCCcceeCccccCCCCCccccEEEEccCCHHHhcCCEEEEEEEE
Confidence            4578999999999999988 7899999999983     34 999999999999999999999532 2   3569999999


Q ss_pred             CCCCCC--CceeEEEEEechhhhh
Q 031204           73 KDTFSL--DDKMGDAEFYITPFLE   94 (164)
Q Consensus        73 ~~~~~~--~~~lG~~~v~l~~l~~   94 (164)
                      ++.+++  +++||++.+++.++..
T Consensus        99 ~d~~~~~~~~~lG~~~i~l~~l~~  122 (141)
T 1v27_A           99 QARVREEESEFLGEILIELETALL  122 (141)
T ss_dssp             BCSSSSCCBCCCEEEEEEGGGCCC
T ss_pred             CCCCcCCCCceEEEEEEEccccCC
Confidence            999876  8999999999988754

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.85  E-value=9.5e-21  Score=128.65  Aligned_cols=88  Identities=22%  Similarity=0.270  Sum_probs=76.7

Q ss_pred             ccEEEEEEEEEeEcCCCCC-CCCCCcEEEEEEC---CE--EeeeeeeCCCCCeEecEEEEEEeCC---CCcEEEEEEeCC
Q 031204            4 LMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMG---KQ--LKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTVYDKD   74 (164)
Q Consensus         4 ~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~---~~--~~T~~~~~t~~P~w~e~~~f~~~~~---~~~l~i~v~d~~   74 (164)
                      ..+.|.|+|++|++   ++ .+.+||||++.+.   +.  ++|++++++.||.|||+|.|.+...   ...|.|+|||++
T Consensus        24 ~~~~L~V~v~~a~~---~d~~g~sDPyv~v~l~~~~~~~~~kT~v~~~tlnP~wnE~f~f~v~~~~l~~~~L~~~V~d~d  100 (138)
T 1wfm_A           24 QKAELFVTRLEAVT---SNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCD  100 (138)
T ss_dssp             TTTEEEEEEEEEEC---CCCSSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEECC
T ss_pred             CCCEEEEEEEEEEc---CCCCCCcceEEEEEEEcCCCcccEecccCcCCCCCcCCceEEEEecHHHcCCCEEEEEEEECC
Confidence            46789999999993   45 7899999999994   23  8999999999999999999998643   356999999999


Q ss_pred             CCCCCceeEEEEEechhhhh
Q 031204           75 TFSLDDKMGDAEFYITPFLE   94 (164)
Q Consensus        75 ~~~~~~~lG~~~v~l~~l~~   94 (164)
                      .++++++||++.+++.++..
T Consensus       101 ~~~~dd~lG~~~i~l~~l~~  120 (138)
T 1wfm_A          101 RFSRHSVAGELRLGLDGTSV  120 (138)
T ss_dssp             SSCTTSCSEEEEEESSSSSS
T ss_pred             CCCCCcEEEEEEEEcccccC
Confidence            99999999999999998853

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.84  E-value=1.2e-20  Score=127.93  Aligned_cols=92  Identities=25%  Similarity=0.438  Sum_probs=81.1

Q ss_pred             ccEEEEEEEEEeEcCCCCC-C-CCCCcEEEEEECC---E-EeeeeeeCCCCCeEecEEEEE-EeCC---CCcEEEEEEeC
Q 031204            4 LMGLLRVHVLRGVNLAVRD-V-VSSDPYVVIKMGK---Q-LKTRVVKNNVNPEWNEDLTLS-ISDS---NLPIKLTVYDK   73 (164)
Q Consensus         4 ~~g~L~v~v~~a~~L~~~~-~-~~~dpyv~v~~~~---~-~~T~~~~~t~~P~w~e~~~f~-~~~~---~~~l~i~v~d~   73 (164)
                      ..+.|.|+|++|++|+.++ . +.+||||++.+.+   . ++|++++++.||.|||+|.|. +...   ...|.|+|||+
T Consensus        20 ~~~~L~v~v~~a~~L~~~d~~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~   99 (138)
T 1ugk_A           20 ERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSF   99 (138)
T ss_dssp             GGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEEEE
T ss_pred             CCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEecCCCceEecCcCcCCCCCcEeeEEEEcCcCHHHhccCEEEEEEEEC
Confidence            5678999999999999988 4 7899999999963   4 999999999999999999996 5432   35699999999


Q ss_pred             CCCCCCceeEEEEEechhhhhh
Q 031204           74 DTFSLDDKMGDAEFYITPFLEA   95 (164)
Q Consensus        74 ~~~~~~~~lG~~~v~l~~l~~~   95 (164)
                      +.++++++||++.+++.++..+
T Consensus       100 d~~~~~~~lG~~~i~l~~l~~~  121 (138)
T 1ugk_A          100 DRFSRDDIIGEVLIPLSGIELS  121 (138)
T ss_dssp             CSSCCCCCCEEEEEECTTCCCT
T ss_pred             CCCCCCcEEEEEEEehhHccCC
Confidence            9998999999999999988664

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A*

Probab=99.84  E-value=1.4e-20  Score=130.54  Aligned_cols=91  Identities=30%  Similarity=0.385  Sum_probs=80.5

Q ss_pred             ccEEEEEEEEEeEcCCCCC-CCCCCcEEEEEECC-----E-EeeeeeeCCCCCeEecEEEEEEeCC---CCcEEEEEEeC
Q 031204            4 LMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGK-----Q-LKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTVYDK   73 (164)
Q Consensus         4 ~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~-----~-~~T~~~~~t~~P~w~e~~~f~~~~~---~~~l~i~v~d~   73 (164)
                      ..|.|.|+|++|++|+..+ .+.+||||++++.+     . ++|++++++.||.|||+|.|.+...   ...|.|+|||+
T Consensus        23 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~  102 (159)
T 1tjx_A           23 TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDY  102 (159)
T ss_dssp             TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEEC
T ss_pred             CCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCceeceeeCceecCCCCCcccceEEEEcCHHHhCCcEEEEEEEEC
Confidence            4679999999999999998 78999999999862     3 8999999999999999999998643   34699999999


Q ss_pred             CCCCCCceeEEEEEechhhhh
Q 031204           74 DTFSLDDKMGDAEFYITPFLE   94 (164)
Q Consensus        74 ~~~~~~~~lG~~~v~l~~l~~   94 (164)
                      +.++++++||++.+++..+..
T Consensus       103 d~~~~~~~iG~~~i~l~~~~~  123 (159)
T 1tjx_A          103 DKIGKNDAIGKVFVGYNSTGA  123 (159)
T ss_dssp             CSSSCCEEEEEEEEETTCCHH
T ss_pred             CCCCCCceEEEEEECCCCCCc
Confidence            999899999999999987543

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A

Probab=99.84  E-value=1.9e-20  Score=130.80  Aligned_cols=91  Identities=32%  Similarity=0.434  Sum_probs=81.7

Q ss_pred             ccEEEEEEEEEeEcCCCCC-CCCCCcEEEEEECC-----E-EeeeeeeCCCCCeEecEEEEEEeCC---CCcEEEEEEeC
Q 031204            4 LMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGK-----Q-LKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTVYDK   73 (164)
Q Consensus         4 ~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~-----~-~~T~~~~~t~~P~w~e~~~f~~~~~---~~~l~i~v~d~   73 (164)
                      ..+.|.|+|++|++|+..+ .+.+||||++++.+     . ++|++++++.||.|||+|.|.+...   ...|.|+|||+
T Consensus        35 ~~~~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~  114 (166)
T 2cm5_A           35 QQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDY  114 (166)
T ss_dssp             TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEEC
T ss_pred             CCCEEEEEEEEeECCCCccCCCCCCcEEEEEEECCCCccceEeCCcccCCCCCcccceEEEEcchHhcCCCEEEEEEEEC
Confidence            4678999999999999988 88999999999975     4 9999999999999999999998643   35799999999


Q ss_pred             CCCCCCceeEEEEEechhhhh
Q 031204           74 DTFSLDDKMGDAEFYITPFLE   94 (164)
Q Consensus        74 ~~~~~~~~lG~~~v~l~~l~~   94 (164)
                      +.++++++||++.+++.++..
T Consensus       115 d~~~~~~~iG~~~i~l~~~~~  135 (166)
T 2cm5_A          115 DIGKSNDYIGGCQLGISAKGE  135 (166)
T ss_dssp             CSSSCCEEEEEEEEETTCCHH
T ss_pred             CCCCCCcEEEeEEEecccCCc
Confidence            999899999999999998654

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus}

Probab=99.84  E-value=8.6e-21  Score=128.42  Aligned_cols=92  Identities=29%  Similarity=0.367  Sum_probs=81.6

Q ss_pred             ccEEEEEEEEEeEcCCCCC-CCCCCcEEEEEECC-----E-EeeeeeeCCCCCeEecEEEEEEeCCC---CcEEEEEEeC
Q 031204            4 LMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGK-----Q-LKTRVVKNNVNPEWNEDLTLSISDSN---LPIKLTVYDK   73 (164)
Q Consensus         4 ~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~-----~-~~T~~~~~t~~P~w~e~~~f~~~~~~---~~l~i~v~d~   73 (164)
                      ..|.|.|+|++|++|+..+ .+.+||||++++.+     . ++|++++++.||.|||+|.|.+....   ..|.|+|||+
T Consensus        14 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~~~V~d~   93 (138)
T 3n5a_A           14 SANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTEKLRETTIIITVMDK   93 (138)
T ss_dssp             TTTEEEEEEEEEESCCCCBTTTBCCEEEEEEEEETTEEEEEEECCCCSSCSSCEEEEEEEEECCGGGGGGEEEEEEEEEC
T ss_pred             CCCeEEEEEEEeeCCCCcCCCCCcCeEEEEEEEeCCCccceEeCccccCCCCCcCcceEEEECChhhcCceEEEEEEEEC
Confidence            5688999999999999988 78999999999863     3 89999999999999999999986543   4699999999


Q ss_pred             CCCCCCceeEEEEEechhhhhh
Q 031204           74 DTFSLDDKMGDAEFYITPFLEA   95 (164)
Q Consensus        74 ~~~~~~~~lG~~~v~l~~l~~~   95 (164)
                      +.++++++||++.+++.++..+
T Consensus        94 ~~~~~~~~lG~~~i~l~~~~~~  115 (138)
T 3n5a_A           94 DKLSRNDVIGKIYLSWKSGPGE  115 (138)
T ss_dssp             CSSSCCEEEEEEEESSSSCHHH
T ss_pred             CCCCCCcEEEEEEEccccCChH
Confidence            9998999999999999986544

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.83  E-value=1.2e-20  Score=128.54  Aligned_cols=91  Identities=24%  Similarity=0.228  Sum_probs=78.5

Q ss_pred             ccEEEEEEEEEeEcCCCCC-CCCCCcEEEEEECC-----E-EeeeeeeCCCCCeEecEEEEEEeCC---CCcEEEEEEeC
Q 031204            4 LMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGK-----Q-LKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTVYDK   73 (164)
Q Consensus         4 ~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~-----~-~~T~~~~~t~~P~w~e~~~f~~~~~---~~~l~i~v~d~   73 (164)
                      ..+.|.|+|++|++|+.++ .+ +||||++++.+     . ++|++++++.||.|||+|.|.+...   ...|.|+|||+
T Consensus        22 ~~~~L~v~v~~a~~L~~~d~~g-~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~  100 (142)
T 2dmg_A           22 QRNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSLPEVQRRTLDVAVKNS  100 (142)
T ss_dssp             TTTEEEEEEEEEECCCCSSTTC-CCEEEEEEEESCCCSSSCEECCCCCSCSSCEEEEEEEECCCHHHHHHCEEEEEEEEC
T ss_pred             CCCEEEEEEEEeECCCCCCCCC-CCeeEEEEEEcCCCCCCcccCCccCCCCCCCcCceEEEEecHHHhCcCEEEEEEEEC
Confidence            4678999999999999988 77 99999999943     3 8999999999999999999998532   35799999999


Q ss_pred             CCCCC--CceeEEEEEechhhhhh
Q 031204           74 DTFSL--DDKMGDAEFYITPFLEA   95 (164)
Q Consensus        74 ~~~~~--~~~lG~~~v~l~~l~~~   95 (164)
                      +.+++  +++||++.+++.++...
T Consensus       101 d~~~~~~~~~iG~~~i~l~~~~~~  124 (142)
T 2dmg_A          101 GGFLSKDKGLLGKVLVALASEELA  124 (142)
T ss_dssp             CCSSCCSCCCCEEEEEECCCSTTT
T ss_pred             CCccccCCcEEEEEEEeccccccc
Confidence            98763  57999999999887654

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus}

Probab=99.83  E-value=1.1e-19  Score=147.37  Aligned_cols=86  Identities=28%  Similarity=0.397  Sum_probs=79.5

Q ss_pred             ccEEEEEEEEEeEcCCCCC-CCCCCcEEEEEECCE-EeeeeeeCCCCCeEecEEEEEEeC--CCCcEEEEEEeCCCCCCC
Q 031204            4 LMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQ-LKTRVVKNNVNPEWNEDLTLSISD--SNLPIKLTVYDKDTFSLD   79 (164)
Q Consensus         4 ~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~~-~~T~~~~~t~~P~w~e~~~f~~~~--~~~~l~i~v~d~~~~~~~   79 (164)
                      ..|.|.|+|++|++|+. + ++++||||++.++++ ++|++++++.||.|||+|.|.+..  ..+.|.|+|||+|..+.|
T Consensus       392 ~~~~L~V~V~~A~~L~~-D~~g~sDPYV~v~l~~~~~kTkvik~tlNP~Wne~f~f~~~~~~~~~~L~~~V~D~D~~~~d  470 (540)
T 3nsj_A          392 GLAHLVVSNFRAEHLWG-DYTTATDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVLLSTGGPLRVQVWDADYGWDD  470 (540)
T ss_dssp             TEEEEEEEEEEEESCCC-SSCSCCCEEEEEEETTEEEECCCBCSCSSCBCCCCEEEEEEETTTCCCEEEEEEECCSSSCC
T ss_pred             cccEEEEEEEEccCCCc-ccCCCcCeEEEEEECCEeeeeeeecCCCCCCCCeEEEEEEecCCCCCEEEEEEEECCCCCCC
Confidence            47899999999999998 8 889999999999999 999999999999999999998642  567799999999999899


Q ss_pred             ceeEEEEEech
Q 031204           80 DKMGDAEFYIT   90 (164)
Q Consensus        80 ~~lG~~~v~l~   90 (164)
                      |+||++.++|.
T Consensus       471 D~LG~~~~~L~  481 (540)
T 3nsj_A          471 DLLGSCDRSPH  481 (540)
T ss_dssp             EEEEEEEECCC
T ss_pred             CEEEEEEEEee
Confidence            99999999985

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.83  E-value=1.1e-20  Score=129.52  Aligned_cols=92  Identities=26%  Similarity=0.297  Sum_probs=79.8

Q ss_pred             ccEEEEEEEEEeEcCCCC-C-------CCCCCcEEEEEECC---E-EeeeeeeCCCCCeEecEEEEEEeCC---CCcEEE
Q 031204            4 LMGLLRVHVLRGVNLAVR-D-------VVSSDPYVVIKMGK---Q-LKTRVVKNNVNPEWNEDLTLSISDS---NLPIKL   68 (164)
Q Consensus         4 ~~g~L~v~v~~a~~L~~~-~-------~~~~dpyv~v~~~~---~-~~T~~~~~t~~P~w~e~~~f~~~~~---~~~l~i   68 (164)
                      ..+.|.|+|++|++|+.. +       .+.+||||++.+.+   . ++|++++++.||.|||+|.|.+...   ...|.|
T Consensus        24 ~~~~L~V~v~~a~~L~~~~d~~g~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~  103 (147)
T 2enp_A           24 LHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEERYTFEIPFLEAQRRTLLL  103 (147)
T ss_dssp             TTTEEEEEEEEEECCCCSCSSCCSSCTTCCCCCEEEEEEETCCSSCEECCCCCSCSSCCCCBCCEECCCHHHHHHSEEEE
T ss_pred             CCCEEEEEEEEEeCCCCccccccccccCCCCCcEEEEEEEeCCCcceEeecccCCCCCeEeeeEEEEeChHHhccCEEEE
Confidence            467899999999999984 3       35899999999973   3 9999999999999999999998642   357999


Q ss_pred             EEEeCCCCCCCceeEEEEEechhhhhh
Q 031204           69 TVYDKDTFSLDDKMGDAEFYITPFLEA   95 (164)
Q Consensus        69 ~v~d~~~~~~~~~lG~~~v~l~~l~~~   95 (164)
                      +|||++.++++++||++.+++.++...
T Consensus       104 ~V~d~d~~~~~~~iG~~~i~l~~l~~~  130 (147)
T 2enp_A          104 TVVDFDKFSRHCVIGKVSVPLCEVDLV  130 (147)
T ss_dssp             EEECCSTTCCSCCCEEEEEETTTSCTT
T ss_pred             EEEECCCCcCCcEEEEEEEechhcCCC
Confidence            999999998999999999999988654

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A

Probab=99.83  E-value=9.3e-20  Score=125.63  Aligned_cols=88  Identities=28%  Similarity=0.338  Sum_probs=74.6

Q ss_pred             ccEEEEEEEEEeEcCCCCC-CCCCCcEEEEEEC--CE----EeeeeeeCCCCCeEecEEEEEEeCCC---CcEEEEEEeC
Q 031204            4 LMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMG--KQ----LKTRVVKNNVNPEWNEDLTLSISDSN---LPIKLTVYDK   73 (164)
Q Consensus         4 ~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~--~~----~~T~~~~~t~~P~w~e~~~f~~~~~~---~~l~i~v~d~   73 (164)
                      ..+.|.|+|++|++|+..+ .+.+||||++++.  +.    ++|++++++.||.|||+|.|.+....   ..|.|+|||+
T Consensus        28 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~v~V~d~  107 (153)
T 1w15_A           28 TTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDS  107 (153)
T ss_dssp             TTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEEEEC
T ss_pred             CCCEEEEEEEEeECCCCcCCCCCCCeEEEEEEEeCCeEeceEecCcccCCCCCeecceEEEECCHHHhCceEEEEEEEeC
Confidence            4678999999999999988 7899999999994  32    79999999999999999999987542   4699999999


Q ss_pred             CCCCCCceeEEEEEechh
Q 031204           74 DTFSLDDKMGDAEFYITP   91 (164)
Q Consensus        74 ~~~~~~~~lG~~~v~l~~   91 (164)
                      +.++++++||++.+++.+
T Consensus       108 d~~~~~~~lG~~~i~l~~  125 (153)
T 1w15_A          108 ERGSRNEVIGRLVLGATA  125 (153)
T ss_dssp             CTTSCCEEEEEEEESTTC
T ss_pred             CCCCCCcEEEEEEECCCC
Confidence            999899999999999987

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.83  E-value=2.3e-20  Score=125.78  Aligned_cols=87  Identities=22%  Similarity=0.388  Sum_probs=74.5

Q ss_pred             ccEEEEEEEEEeEcCCCCCCCCCCcEEEEEECCE-Eeeeeee-CCCCCeEecEEEEEEeCCCCcEEEEEEeCCCCCCCce
Q 031204            4 LMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQ-LKTRVVK-NNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSLDDK   81 (164)
Q Consensus         4 ~~g~L~v~v~~a~~L~~~~~~~~dpyv~v~~~~~-~~T~~~~-~t~~P~w~e~~~f~~~~~~~~l~i~v~d~~~~~~~~~   81 (164)
                      .++.|.|+|++|++++.  .+.+||||++.  .+ .+|+++. ++.||.|||+|.|.+......|.|+|||++ +++|++
T Consensus         3 ~~~~L~V~V~~A~~l~~--~g~~DPYv~v~--~~~~kt~~~~~~t~nP~WnE~f~f~v~~~~~~L~~~V~D~d-~~~dd~   77 (131)
T 2cjt_A            3 VMSLLCVGVKKAKFDGA--QEKFNTYVTLK--VQNVKSTTIAVRGSQPSWEQDFMFEINRLDLGLTVEVWNKG-LIWDTM   77 (131)
T ss_dssp             CCEEEEEEEEEEECSSC--GGGCEEEEEEE--ETTEEEECCCEESSSCEEEEEEEEEECCCSSEEEEEEEECC-SSCEEE
T ss_pred             cceEEEEEEEEeECCCC--CCCcCeEEEEE--ecCEEEeEecCCCCCceECCEEEEEEeCCCCeEEEEEEECC-CCCCCe
Confidence            46899999999998853  57899999999  34 5665554 699999999999999877777999999999 889999


Q ss_pred             eEEEEEechhhhhh
Q 031204           82 MGDAEFYITPFLEA   95 (164)
Q Consensus        82 lG~~~v~l~~l~~~   95 (164)
                      ||++.+++.++...
T Consensus        78 iG~~~i~l~~l~~~   91 (131)
T 2cjt_A           78 VGTVWIPLRTIRQS   91 (131)
T ss_dssp             EEEEEEEGGGSCBC
T ss_pred             EEEEEEEHHHhhhc
Confidence            99999999987653

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=99.82  E-value=2.1e-19  Score=136.32  Aligned_cols=90  Identities=30%  Similarity=0.473  Sum_probs=78.4

Q ss_pred             cccEEEEEEEEEeEcCCCCC-CCCCCcEEEEEEC---CE-EeeeeeeCCCCCeEecEEEEEEeCC---CCcEEEEEEeCC
Q 031204            3 NLMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMG---KQ-LKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTVYDKD   74 (164)
Q Consensus         3 ~~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~---~~-~~T~~~~~t~~P~w~e~~~f~~~~~---~~~l~i~v~d~~   74 (164)
                      ...+.|.|+|++|++|+.++ .+.+||||++++.   .+ ++|++++++.||.|||+|.|.+...   ...|.|+|||++
T Consensus        17 ~~~~~L~v~v~~a~~L~~~d~~g~~dPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~V~d~d   96 (296)
T 1dqv_A           17 YGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFD   96 (296)
T ss_dssp             SSSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEECC
T ss_pred             CCCCEEEEEEEEeECCCCcCCCCCcCeEEEEEEEcCCCeeEeCCccCCCCCCcEeeEEEEEecHHHhcCCEEEEEEEEcC
Confidence            35689999999999999998 8899999999993   34 9999999999999999999998533   347999999999


Q ss_pred             CCCCCceeEEEEEe-chhh
Q 031204           75 TFSLDDKMGDAEFY-ITPF   92 (164)
Q Consensus        75 ~~~~~~~lG~~~v~-l~~l   92 (164)
                      .++++++||++.++ +.++
T Consensus        97 ~~~~~~~iG~~~i~~l~~~  115 (296)
T 1dqv_A           97 RFSRHDLIGQVVLDNLLEL  115 (296)
T ss_dssp             SSSCCCEEEEEECCCTTGG
T ss_pred             CCCCCceEEEEEecccccc
Confidence            99999999999985 4333

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.80  E-value=7.1e-19  Score=123.05  Aligned_cols=88  Identities=19%  Similarity=0.374  Sum_probs=75.7

Q ss_pred             cccEEEEEEEEEeEcCCCCCCCCCCcEEEEEECCE-Eeeeeee-CCCCCeEecEEEEEEeCCCCcEEEEEEeCCCCCCCc
Q 031204            3 NLMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQ-LKTRVVK-NNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSLDD   80 (164)
Q Consensus         3 ~~~g~L~v~v~~a~~L~~~~~~~~dpyv~v~~~~~-~~T~~~~-~t~~P~w~e~~~f~~~~~~~~l~i~v~d~~~~~~~~   80 (164)
                      +.++.|.|+|++|++++  ..+.+||||++.  .+ .+|+++. ++.||.|||+|.|.+......|.|+|||++ +++|+
T Consensus        11 g~~~~L~V~V~~A~~l~--~~g~~DPYV~v~--~~~~kt~~~~~~t~nP~WnE~f~f~v~~~~~~L~~~V~D~d-~~~dd   85 (167)
T 2cjs_A           11 GILSLLCVGVKKAKFDG--AQEKFNTYVTLK--VQNVESTTIAVRGSQPSWEQDFMFEINRLDLGLTVEVWNKG-LIWDT   85 (167)
T ss_dssp             SCCCEEEEEEEEEECSS--CGGGCEEEEEEE--ETTEEEECCCEESSSCEEEEEEEEECCCTTSEEEEEEEECC-SSCCE
T ss_pred             CceEEEEEEEEEEECCC--CCCCCCeEEEEE--ecceEEEEecCCCCCCCCCCEEEEEeeCCCCEEEEEEEECC-CCCCc
Confidence            35789999999999884  257899999999  34 6676665 599999999999999877778999999999 88999


Q ss_pred             eeEEEEEechhhhhh
Q 031204           81 KMGDAEFYITPFLEA   95 (164)
Q Consensus        81 ~lG~~~v~l~~l~~~   95 (164)
                      +||++.++|.++...
T Consensus        86 ~iG~~~i~L~~l~~~  100 (167)
T 2cjs_A           86 MVGTVWIPLRTIRQS  100 (167)
T ss_dssp             EEEEEEEEGGGSCBC
T ss_pred             eEEEEEEEHHHhccc
Confidence            999999999988653

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus}

Probab=99.80  E-value=4e-18  Score=114.65  Aligned_cols=89  Identities=15%  Similarity=0.245  Sum_probs=79.9

Q ss_pred             EEEEEEEEEeEcCCCCCCCCCCcEEEEEECCE-Eeeeeee-CCCCCeEecEEEEEEeCC---CCcEEEEEEeCCCCCCCc
Q 031204            6 GLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQ-LKTRVVK-NNVNPEWNEDLTLSISDS---NLPIKLTVYDKDTFSLDD   80 (164)
Q Consensus         6 g~L~v~v~~a~~L~~~~~~~~dpyv~v~~~~~-~~T~~~~-~t~~P~w~e~~~f~~~~~---~~~l~i~v~d~~~~~~~~   80 (164)
                      --|+|.|.+|.+|+    +++|||+++.+-+. ++|+++. ++.||.|||.|.|++..+   ++.|.|.|+|++.++++.
T Consensus        21 msL~V~l~~a~~Lp----g~~Dp~akv~FRg~k~kTkvi~~~~~npvfnE~F~wpl~~~ld~~e~L~v~V~d~~~v~~nr   96 (144)
T 3l9b_A           21 MALIVHLKTVSELR----GRADRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYSKVFSNK   96 (144)
T ss_dssp             EEEEEEEEEEESCC----SCEEEEEEEEETTEEEECCCEEEECSCEEEEEEEEEEESSCCCTTCEEEEEEEEECTTSCCE
T ss_pred             EEEEEEEEEecCCC----CCCCCeEEEEEeccceeeEEeccCCCCceEcceEEecCCCCCCCCCEEEEEEEECccccCCC
Confidence            35899999999998    57899999999888 9999998 699999999999999643   467999999999999999


Q ss_pred             eeEEEEEechhhhhhhcc
Q 031204           81 KMGDAEFYITPFLEALKM   98 (164)
Q Consensus        81 ~lG~~~v~l~~l~~~~~~   98 (164)
                      +||++.++|.++..+...
T Consensus        97 lIG~~~i~Lq~lv~~~~l  114 (144)
T 3l9b_A           97 LIGTFRMVLQKVVEENRV  114 (144)
T ss_dssp             EEEEEEEESHHHHHHSEE
T ss_pred             EEEEEEEEhHHhccCCeE
Confidence            999999999999987643

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A

Probab=99.75  E-value=2.8e-17  Score=135.65  Aligned_cols=92  Identities=23%  Similarity=0.401  Sum_probs=81.8

Q ss_pred             ccEEEEEEEEEeEcCCCCC---CCCCCcEEEEEECC-----E-EeeeeeeCC-CCCeEecEEEEEEeCCC-CcEEEEEEe
Q 031204            4 LMGLLRVHVLRGVNLAVRD---VVSSDPYVVIKMGK-----Q-LKTRVVKNN-VNPEWNEDLTLSISDSN-LPIKLTVYD   72 (164)
Q Consensus         4 ~~g~L~v~v~~a~~L~~~~---~~~~dpyv~v~~~~-----~-~~T~~~~~t-~~P~w~e~~~f~~~~~~-~~l~i~v~d   72 (164)
                      ..+.|+|+|++|++|+..+   .+.+||||++.+.+     . ++|++++++ .||.|||+|.|.+..+. ..|.|+|||
T Consensus       495 ~~~~L~V~Vi~A~~L~~~d~~~~~~~DPYV~V~l~g~~~d~~~~kTkvi~~ng~NP~WnE~f~F~v~~~el~~L~~~V~D  574 (624)
T 1djx_A          495 RPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVED  574 (624)
T ss_dssp             CCEEEEEEEEEEESCCCCSSCSSSCCCEEEEEEEESSGGGCEEEECCCCTTCSSSCEEEEEEEEEESCGGGCEEEEEEEE
T ss_pred             cceEEEEEEEEcCCCCcccccccCCCCcEEEEEEecCCCCcceeecccccCCCCCCccCceEEEEEecCCCCEEEEEEEE
Confidence            4689999999999999887   57899999999953     4 999999997 99999999999998665 469999999


Q ss_pred             CCCCCCCceeEEEEEechhhhhh
Q 031204           73 KDTFSLDDKMGDAEFYITPFLEA   95 (164)
Q Consensus        73 ~~~~~~~~~lG~~~v~l~~l~~~   95 (164)
                      ++.++++++||++.+++..+..+
T Consensus       575 ~D~~~~dd~iG~~~ipl~~L~~G  597 (624)
T 1djx_A          575 YDSSSKNDFIGQSTIPWNSLKQG  597 (624)
T ss_dssp             CCSSSCCEEEEEEEEEGGGBCCE
T ss_pred             cCCCCCCceeEEEEEEHHHcCCC
Confidence            99999999999999999887653

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=99.74  E-value=1e-17  Score=125.96  Aligned_cols=91  Identities=30%  Similarity=0.375  Sum_probs=80.0

Q ss_pred             ccEEEEEEEEEeEcCCCCC-CCCCCcEEEEEEC--C---E-EeeeeeeCCCCCeEecEEEEEEeCCC---CcEEEEEEeC
Q 031204            4 LMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMG--K---Q-LKTRVVKNNVNPEWNEDLTLSISDSN---LPIKLTVYDK   73 (164)
Q Consensus         4 ~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~--~---~-~~T~~~~~t~~P~w~e~~~f~~~~~~---~~l~i~v~d~   73 (164)
                      ..+.|.|.|++|++|+..+ .+.+||||++.+.  +   . ++|++++++.||.|||+|.|.+....   ..|.|+|||+
T Consensus       148 ~~~~l~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~  227 (284)
T 2r83_A          148 TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDY  227 (284)
T ss_dssp             TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCTTTGGGEEEEEEEEEC
T ss_pred             cCCceEEEEEEeECCCCcCCCCCcCeEEEEEEEeCCcEeeeeccceecCCCCCEEceeEEEeCCHHHhCceEEEEEEEeC
Confidence            3578999999999999988 7899999999984  2   2 89999999999999999999997542   3599999999


Q ss_pred             CCCCCCceeEEEEEechhhhh
Q 031204           74 DTFSLDDKMGDAEFYITPFLE   94 (164)
Q Consensus        74 ~~~~~~~~lG~~~v~l~~l~~   94 (164)
                      +.++++++||++.+++..+..
T Consensus       228 d~~~~~~~iG~~~i~l~~~~~  248 (284)
T 2r83_A          228 DKIGKNDAIGKVFVGYNSTGA  248 (284)
T ss_dssp             CSSSCCCEEEEEEEETTCCHH
T ss_pred             CCCCCCcEEEEEEECCCCCCc
Confidence            999999999999999987644

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A

Probab=99.74  E-value=8.1e-18  Score=140.45  Aligned_cols=93  Identities=25%  Similarity=0.464  Sum_probs=83.5

Q ss_pred             cccEEEEEEEEEeEcCCC---CC-CCCCCcEEEEEECC---E-EeeeeeeCCCCCeEecEEEEEEeCC-CCcEEEEEEeC
Q 031204            3 NLMGLLRVHVLRGVNLAV---RD-VVSSDPYVVIKMGK---Q-LKTRVVKNNVNPEWNEDLTLSISDS-NLPIKLTVYDK   73 (164)
Q Consensus         3 ~~~g~L~v~v~~a~~L~~---~~-~~~~dpyv~v~~~~---~-~~T~~~~~t~~P~w~e~~~f~~~~~-~~~l~i~v~d~   73 (164)
                      .+.|.|.|+|++|++|+.   ++ .+.+||||++.+.+   . ++|++++++.||+|||+|.|.+..+ ...|.|+|||+
T Consensus        15 ~~~g~L~V~Vi~A~nL~~~~~~D~~g~sDPYV~V~l~~~~~~k~kTkvik~tlNPvWNEtF~F~v~~~~~~~L~~~V~D~   94 (749)
T 1cjy_A           15 QYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDA   94 (749)
T ss_dssp             CCCEEEEEEEEEEECCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCBCEEEEEEC
T ss_pred             CCccEEEEEEEEEECCCCccccCCCCCcCeEEEEEEecCCCCeEecceEcCCCCCeeeeEEEEEecCCCCCEEEEEEEEC
Confidence            367999999999999998   66 78999999999984   4 9999999999999999999999864 46799999999


Q ss_pred             CCCCCCceeEEEEEechhhhhhh
Q 031204           74 DTFSLDDKMGDAEFYITPFLEAL   96 (164)
Q Consensus        74 ~~~~~~~~lG~~~v~l~~l~~~~   96 (164)
                      +.++ |++||++.+++.++..+.
T Consensus        95 D~~~-ddfIG~v~I~L~~L~~g~  116 (749)
T 1cjy_A           95 NYVM-DETLGTATFTVSSMKVGE  116 (749)
T ss_dssp             CSSS-CEEEEEECCBSTTSCTTC
T ss_pred             CCCC-CceeEEEEEEHHHcCCCC
Confidence            9998 999999999999886544

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus}

Probab=99.70  E-value=1.2e-18  Score=140.14  Aligned_cols=89  Identities=11%  Similarity=0.198  Sum_probs=9.5

Q ss_pred             ccEEEEEEEEEeEcCCCCCCCCCCcEEEEEECCE--EeeeeeeCC---CCCeEecEEEEEEeCCCCcEEEEEEeC-C---
Q 031204            4 LMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQ--LKTRVVKNN---VNPEWNEDLTLSISDSNLPIKLTVYDK-D---   74 (164)
Q Consensus         4 ~~g~L~v~v~~a~~L~~~~~~~~dpyv~v~~~~~--~~T~~~~~t---~~P~w~e~~~f~~~~~~~~l~i~v~d~-~---   74 (164)
                      ..|.|+|+|++|++|++++    ||||++.+++.  .||++++++   .||.|||+|.|.+......|.|+|||. +   
T Consensus         9 ~~~~L~V~VieAk~L~~~d----dpYv~v~l~~~~~~kT~v~~kt~~glnP~WnE~F~f~~~~~~~~L~v~V~d~~d~~~   84 (483)
T 3bxj_A            9 VDNVLKLWIIEARELPPKK----RYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNLPAVRALRLHLYRDSDKKR   84 (483)
T ss_dssp             EEECC-------------------------------------------------CCEECC--------------------
T ss_pred             eccEEEEEEEEcCCcCCCC----CCeEEEEECCeEEeeeeEEeCCCCCCCCccccEEEEecCCCccEEEEEEEecCCccc
Confidence            4678999999999998765    99999999876  899999999   999999999999754556799999994 4   


Q ss_pred             CCCCCceeEEEEEechhhhhhh
Q 031204           75 TFSLDDKMGDAEFYITPFLEAL   96 (164)
Q Consensus        75 ~~~~~~~lG~~~v~l~~l~~~~   96 (164)
                      ..+++++||.+.+++.++..+.
T Consensus        85 ~~~~d~~lG~v~i~l~~l~~~~  106 (483)
T 3bxj_A           85 KKDKAGYVGLVTVPVATLAGRH  106 (483)
T ss_dssp             ----------------------
T ss_pred             cCCCCceEEEEEEEHHHhcCCC
Confidence            3668999999999999887643

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=99.66  E-value=4.6e-17  Score=123.38  Aligned_cols=91  Identities=29%  Similarity=0.414  Sum_probs=80.7

Q ss_pred             ccEEEEEEEEEeEcCCCCC-CCCCCcEEEEEEC--C---E-EeeeeeeCCCCCeEecEEEEEEeCC---CCcEEEEEEeC
Q 031204            4 LMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMG--K---Q-LKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTVYDK   73 (164)
Q Consensus         4 ~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~--~---~-~~T~~~~~t~~P~w~e~~~f~~~~~---~~~l~i~v~d~   73 (164)
                      ..|.|.|+|++|++|+.++ .+.+||||++++.  +   . ++|++++++.||.|||+|.|.+...   ...|.|+|||+
T Consensus       150 ~~~~l~v~v~~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~  229 (296)
T 1dqv_A          150 TAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDY  229 (296)
T ss_dssp             TTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCEEEEC
T ss_pred             ccceeEEEEEEeecCCccCCCCCCCcEEEEEEEeCCcCccceecceecCCCCCeECceEEEEcCHHHccCcEEEEEEEeC
Confidence            3588999999999999988 7889999999996  2   3 8999999999999999999998654   34699999999


Q ss_pred             CCCCCCceeEEEEEechhhhh
Q 031204           74 DTFSLDDKMGDAEFYITPFLE   94 (164)
Q Consensus        74 ~~~~~~~~lG~~~v~l~~l~~   94 (164)
                      +.++++++||.+.+++..+..
T Consensus       230 d~~~~~~~iG~~~i~l~~~~~  250 (296)
T 1dqv_A          230 DCIGHNEVIGVCRVGPEAADP  250 (296)
T ss_dssp             CSSSCCEEEEECCCSSCTTCH
T ss_pred             CCCCCCceEEEEEECCccCCc
Confidence            999999999999999988744

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=99.59  E-value=4.7e-15  Score=123.63  Aligned_cols=91  Identities=34%  Similarity=0.505  Sum_probs=81.4

Q ss_pred             cEEEEEEEEEeEcCCCCC-CCCCCcEEEEEEC-----CE-EeeeeeeCCCCCeEecEEEEEEeCC--CCcEEEEEEeCCC
Q 031204            5 MGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMG-----KQ-LKTRVVKNNVNPEWNEDLTLSISDS--NLPIKLTVYDKDT   75 (164)
Q Consensus         5 ~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~-----~~-~~T~~~~~t~~P~w~e~~~f~~~~~--~~~l~i~v~d~~~   75 (164)
                      .+.|.|+|.+|++|++++ .+.+|||+++.+.     .. ++|++++++.||.|||+|.|.+...  ...|.|+|||++.
T Consensus       171 ~~~L~V~v~~a~~L~~~d~~g~sDPyvkv~l~p~~~~~~k~kT~v~~~tlnP~wne~f~f~~~~~~~~~~L~v~v~d~d~  250 (674)
T 3pfq_A          171 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRRLSVEIWDWDL  250 (674)
T ss_dssp             SSEEEEEEEEEESCCCCSTTSSCCEEEEEEEESCSSCCSCEECCCCSSCSSCEEEEEEEEECCSTTTTCEEEEEEEECCS
T ss_pred             cceeeeeeecccccCCCCcccccCcccccccccCccccccccccccccccCCCccceeeeecccCCccceeeeEEeeccc
Confidence            467899999999999999 8899999999983     23 9999999999999999999998643  3559999999999


Q ss_pred             CCCCceeEEEEEechhhhhh
Q 031204           76 FSLDDKMGDAEFYITPFLEA   95 (164)
Q Consensus        76 ~~~~~~lG~~~v~l~~l~~~   95 (164)
                      .+++++||.+.+++.++...
T Consensus       251 ~~~dd~iG~~~i~l~~l~~~  270 (674)
T 3pfq_A          251 TSRNDFMGSLSFGISELQKA  270 (674)
T ss_dssp             SSCCEECCBCCCBTTHHHHC
T ss_pred             ccccccccccccchhhhccC
Confidence            99999999999999998764

>1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A

Probab=99.51  E-value=9.9e-13  Score=86.05  Aligned_cols=113  Identities=18%  Similarity=0.314  Sum_probs=86.7

Q ss_pred             ccEEEEEEEEEeEc--CCCCCCCCCCcEEEEEECCE-----Eee-eeeeCCCCCeEecEEEEEEeCCCCcEEEEEEeCCC
Q 031204            4 LMGLLRVHVLRGVN--LAVRDVVSSDPYVVIKMGKQ-----LKT-RVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDT   75 (164)
Q Consensus         4 ~~g~L~v~v~~a~~--L~~~~~~~~dpyv~v~~~~~-----~~T-~~~~~t~~P~w~e~~~f~~~~~~~~l~i~v~d~~~   75 (164)
                      +...|+|.+.++.-  |++. ....||||.+.+...     .+| ...++|..|.||++|.-.+. .++.|.|.|++...
T Consensus         4 m~~flRi~~~~~~~~~~~~~-~~~lDPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~V~-~Gr~l~i~Vfh~a~   81 (126)
T 1yrk_A            4 MAPFLRIAFNSYELGSLQAE-DEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIY-EGRVIQIVLMRAAE   81 (126)
T ss_dssp             CCCEEEEEEEEEECSSCCCS-SSSCCCEEEEEEEEEEEETTEEEEECCSCCBCCCTTCEEEEECC-TTCEEEEEEEEETT
T ss_pred             cCccEEeeeccccccccCCc-cccCCceEEEEeeeeEEcccceeecccCCCCCcCccceEEeeee-CCEEEEEEEEcCCC
Confidence            45678888876653  2221 236899999999854     366 66667999999999999987 56779999997654


Q ss_pred             CCCCceeEEEEEechhhhhhhcccccCCCCceEEEEeccCCCccccccceeEeeCCeEEEEEeEEecccceeeEEEEEEE
Q 031204           76 FSLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRNVEVGEVKIQLEW  155 (164)
Q Consensus        76 ~~~~~~lG~~~v~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~G~l~l~l~~  155 (164)
                          +|++.+++++.++......                              .+|  ..+.|+.|+  ++|+|++.++|
T Consensus        82 ----~fvAn~tV~~edL~~~c~~------------------------------~~g--~~e~WvdLe--P~Gkl~~~i~~  123 (126)
T 1yrk_A           82 ----EPVSEVTVGVSVLAERCKK------------------------------NNG--KAEFWLDLQ--PQAKVLMSVQY  123 (126)
T ss_dssp             ----EEEEEEEEEHHHHHHHHHT------------------------------TTT--EEEEEEECB--SSCEEEEEEEE
T ss_pred             ----CeeeEEEEEHHHHHhhhcc------------------------------CCC--ceEEEEecc--cCcEEEEEEEE
Confidence                8999999999999975321                              012  239999998  89999999998


Q ss_pred             E
Q 031204          156 I  156 (164)
Q Consensus       156 ~  156 (164)
                      +
T Consensus       124 ~  124 (126)
T 1yrk_A          124 F  124 (126)
T ss_dssp             E
T ss_pred             e
Confidence            6

>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens}

Probab=99.47  E-value=1.3e-12  Score=86.55  Aligned_cols=116  Identities=14%  Similarity=0.269  Sum_probs=88.3

Q ss_pred             cccEEEEEEEEEeEcCCCC--CCCCCCcEEEEEECCE-----Eee-eeeeCCCCCeEecEEEEEEeCCCCcEEEEEEeCC
Q 031204            3 NLMGLLRVHVLRGVNLAVR--DVVSSDPYVVIKMGKQ-----LKT-RVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKD   74 (164)
Q Consensus         3 ~~~g~L~v~v~~a~~L~~~--~~~~~dpyv~v~~~~~-----~~T-~~~~~t~~P~w~e~~~f~~~~~~~~l~i~v~d~~   74 (164)
                      ++.+.|+|.+.++.--+-+  .....||||.+.+...     .+| ...++|..|.||++|.-.+. .++.|.|.|++..
T Consensus         7 ~m~~flRi~l~~~~~~~~~~~~~~~lDPY~aV~VdE~~~te~gqtl~~KkkT~~P~Wne~Fd~~V~-~Gr~l~i~Vfh~a   85 (138)
T 2enj_A            7 GMSPFLRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHIN-KGRVMQIIVKGKN   85 (138)
T ss_dssp             SCCCCEEEEEEEEECCCCCCSCCCCCCCEEEEEEEEEEEETTEEEEEEEEEEECCCSSSEEEECCC-SSCEEEEEEECSS
T ss_pred             ccCcceEEEeeccccCCCCCcccccCCceEEEEeeeeeeccCceeecccCCCCCccccceEeeeEE-CCeEEEEEEEcCC
Confidence            3556788888776643322  2346899999999754     677 66667999999999999886 5677999999655


Q ss_pred             CCCCCceeEEEEEechhhhhhhcccccCCCCceEEEEeccCCCccccccceeEeeCCeEEEEEeEEecccceeeEEEEEE
Q 031204           75 TFSLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRNVEVGEVKIQLE  154 (164)
Q Consensus        75 ~~~~~~~lG~~~v~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~G~l~l~l~  154 (164)
                      .    +|++.++|++.+|......                              .+|  ..+.|+.|+  +.|+|++.++
T Consensus        86 ~----~fVAn~tV~~edL~~~ck~------------------------------~~g--~~e~WvdLe--P~Gkl~v~i~  127 (138)
T 2enj_A           86 V----DLISETTVELYSLAERCRK------------------------------NNG--KTEIWLELK--PQGRMLMNAR  127 (138)
T ss_dssp             C----SCCEEEEEESHHHHHHHHH------------------------------TTT--CEEEEEECB--SSCEEEEEEE
T ss_pred             C----CeeeEEEEEHHHHHhhhcc------------------------------CCC--ceEEEEecc--cCcEEEEEEE
Confidence            4    8999999999999975211                              012  239999998  8999999999


Q ss_pred             EEe
Q 031204          155 WID  157 (164)
Q Consensus       155 ~~~  157 (164)
                      |.-
T Consensus       128 ~~~  130 (138)
T 2enj_A          128 YFL  130 (138)
T ss_dssp             ECC
T ss_pred             EEE
Confidence            963

>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}

Probab=99.45  E-value=5.2e-13  Score=113.31  Aligned_cols=83  Identities=20%  Similarity=0.415  Sum_probs=70.4

Q ss_pred             EEEEEEEEEeEcCCCCCCCCCCcEEEEEECC------E-EeeeeeeC-CCCCeEec-EEEEE-EeCCC-CcEEEEEEeCC
Q 031204            6 GLLRVHVLRGVNLAVRDVVSSDPYVVIKMGK------Q-LKTRVVKN-NVNPEWNE-DLTLS-ISDSN-LPIKLTVYDKD   74 (164)
Q Consensus         6 g~L~v~v~~a~~L~~~~~~~~dpyv~v~~~~------~-~~T~~~~~-t~~P~w~e-~~~f~-~~~~~-~~l~i~v~d~~   74 (164)
                      ..|.|+|++|++|+..   .+||||++.+.+      . ++|+++.+ +.||+||| +|.|. +..+. ..|.|+|||++
T Consensus       725 ~~L~V~Visaq~L~~~---~~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~pela~Lrf~V~D~d  801 (885)
T 3ohm_B          725 NALRVKVISGQFLSDR---KVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLASLRIAAFEEG  801 (885)
T ss_dssp             EEEEEEEEEEESCCSS---CCCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCGGGCEEEEEEEETT
T ss_pred             eEEEEEEEEeccCccc---CCCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcCCcCEEEEEEEcCC
Confidence            4799999999999853   689999999864      2 78999976 69999999 69998 65554 45999999987


Q ss_pred             CCCCCceeEEEEEechhhhhh
Q 031204           75 TFSLDDKMGDAEFYITPFLEA   95 (164)
Q Consensus        75 ~~~~~~~lG~~~v~l~~l~~~   95 (164)
                          +++||++.++|..+..+
T Consensus       802 ----ddfiG~~~lpL~~L~~G  818 (885)
T 3ohm_B          802 ----GKFVGHRILPVSAIRSG  818 (885)
T ss_dssp             ----TEEEEEEEEETTTCCCE
T ss_pred             ----ccEEeeEEEEHHHcCCC
Confidence                79999999999887664

>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B

Probab=99.44  E-value=1.5e-12  Score=110.03  Aligned_cols=85  Identities=19%  Similarity=0.359  Sum_probs=71.1

Q ss_pred             ccEEEEEEEEEeEcCCCCCCCCCCcEEEEEECC------E-Eeee-eeeC-CCCCeEec-EEEE-EEeCCC-CcEEEEEE
Q 031204            4 LMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGK------Q-LKTR-VVKN-NVNPEWNE-DLTL-SISDSN-LPIKLTVY   71 (164)
Q Consensus         4 ~~g~L~v~v~~a~~L~~~~~~~~dpyv~v~~~~------~-~~T~-~~~~-t~~P~w~e-~~~f-~~~~~~-~~l~i~v~   71 (164)
                      ..|.|.|+|++|++|+.   +.+||||++.+.+      . ++|+ ++++ +.||+||| +|.| .+..++ ..|.|.||
T Consensus       676 ~~~~L~V~Visa~~L~~---~~~DPYV~V~l~g~p~d~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~el~~Lr~~V~  752 (799)
T 2zkm_X          676 VATTLSITVISGQFLSE---RSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVM  752 (799)
T ss_dssp             TCEEEEEEEEEEESCCS---SCCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEEE
T ss_pred             eeeeEEEEEEeccccCc---cCCCcEEEEEEEecCCCcccceeecccccCCCCCCeeecceEEEEEEccCCccEEEEEEE
Confidence            36799999999999985   4789999999843      3 7899 7765 69999999 6999 786554 35999999


Q ss_pred             eCCCCCCCceeEEEEEechhhhhh
Q 031204           72 DKDTFSLDDKMGDAEFYITPFLEA   95 (164)
Q Consensus        72 d~~~~~~~~~lG~~~v~l~~l~~~   95 (164)
                      |++    +++||++.+++..+..+
T Consensus       753 D~d----~d~iG~~~ipl~~L~~G  772 (799)
T 2zkm_X          753 EEG----NKFLGHRIIPINALNSG  772 (799)
T ss_dssp             ETT----TEEEEEEEEEGGGBCCE
T ss_pred             EeC----CCccceEeeehhhcCCC
Confidence            986    78999999999887653

>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A

Probab=99.43  E-value=2e-12  Score=109.16  Aligned_cols=84  Identities=14%  Similarity=0.370  Sum_probs=71.8

Q ss_pred             cEEEEEEEEEeEcCCCCCCCCCCcEEEEEECC-------E-EeeeeeeC-CCCCeEecE-EEEE-EeCCC-CcEEEEEEe
Q 031204            5 MGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGK-------Q-LKTRVVKN-NVNPEWNED-LTLS-ISDSN-LPIKLTVYD   72 (164)
Q Consensus         5 ~g~L~v~v~~a~~L~~~~~~~~dpyv~v~~~~-------~-~~T~~~~~-t~~P~w~e~-~~f~-~~~~~-~~l~i~v~d   72 (164)
                      .+.|+|+|++|++|+..   .+||||++.+.+       . ++|+++.+ +.||+|||+ |.|. +..++ ..|.|+|||
T Consensus       649 ~~~L~V~Visaq~L~~~---~~DPYV~V~l~g~p~d~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~pela~Lrf~V~D  725 (816)
T 3qr0_A          649 AGTIEIKIISAQFLSDK---QISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDLAVVRIIVSE  725 (816)
T ss_dssp             CEEEEEEEEEEECCCSS---CCCEEEEEEEESSGGGCEEEEEECCCBCSCSSCCBCCCCCEEEEEESCGGGCEEEEEEEE
T ss_pred             ceEEEEEEEEcccCCCC---CCCCeEEEEEeCCCcccccceeeeEEecCCCCCCeEcCceeEEccccCCCccEEEEEEEe
Confidence            47899999999999853   689999999864       4 79999886 699999998 9998 76555 459999999


Q ss_pred             CCCCCCCceeEEEEEechhhhhh
Q 031204           73 KDTFSLDDKMGDAEFYITPFLEA   95 (164)
Q Consensus        73 ~~~~~~~~~lG~~~v~l~~l~~~   95 (164)
                      ++    +++||++.++|..+..+
T Consensus       726 ~d----ddfiG~~~ipL~~L~~G  744 (816)
T 3qr0_A          726 EN----GKFIGHRVMPLDGIKPG  744 (816)
T ss_dssp             TT----SCEEEEEEEESTTCCCE
T ss_pred             cC----CCeeeEEEEEHHHcCCc
Confidence            85    78999999999887764

>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*

Probab=95.65  E-value=0.12  Score=44.78  Aligned_cols=87  Identities=14%  Similarity=0.216  Sum_probs=59.3

Q ss_pred             cEEEEEEEEEeEcCCCCCCCCCCcEEEEEE--CCE-----EeeeeeeCCCCCeEecEEEEEEeC---C-CCcEEEEEEeC
Q 031204            5 MGLLRVHVLRGVNLAVRDVVSSDPYVVIKM--GKQ-----LKTRVVKNNVNPEWNEDLTLSISD---S-NLPIKLTVYDK   73 (164)
Q Consensus         5 ~g~L~v~v~~a~~L~~~~~~~~dpyv~v~~--~~~-----~~T~~~~~t~~P~w~e~~~f~~~~---~-~~~l~i~v~d~   73 (164)
                      ...+.|+|.++.++...  ...+-|+.+.+  ++.     ..|..+.-..+|.|||.+.|++.-   | +..|.|+||+.
T Consensus       216 ~~~f~i~i~~~~~~~~~--~~~~~~V~~~l~~g~~~l~~~~~T~~~~~~~~~~Wne~l~f~i~i~dLPr~a~L~~ti~~~  293 (940)
T 2wxf_A          216 EQPFSIELIEGRKVNAD--ERMKLVVQAGLFHGNEMLCKTVSSSEVNVCSEPVWKQRLEFDISVCDLPRMARLCFALYAV  293 (940)
T ss_dssp             CSEEEEEEEEEECCCC-----CEEEEEEEEEETTEESSCCEECCCEESCSSCEEEEEEEEEEEGGGCCTTCEEEEEEEEE
T ss_pred             CCceEEEEEEecccCCC--CCceEEEEEEEEECCEEccCceecccccCCCCcccceEEEcccccccCCcccEEEEEEEEe
Confidence            45689999999998653  24566777654  443     556555557789999999999852   3 45699999995


Q ss_pred             CCC--C----------CCceeEEEEEechhhh
Q 031204           74 DTF--S----------LDDKMGDAEFYITPFL   93 (164)
Q Consensus        74 ~~~--~----------~~~~lG~~~v~l~~l~   93 (164)
                      ...  +          .+..+|.+.+++-+-.
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~lg~~~~~lFd~~  325 (940)
T 2wxf_A          294 VEKAKKARSTKKKSKKADCPIAWANLMLFDYK  325 (940)
T ss_dssp             C----------------CEEEEEEEEESBCTT
T ss_pred             cCCccCccccccccccccceEEEEeeeEECCc
Confidence            321  1          2458999999886643

>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A

Probab=95.42  E-value=0.18  Score=44.25  Aligned_cols=88  Identities=19%  Similarity=0.230  Sum_probs=58.5

Q ss_pred             cEEEEEEEEEeEcCCCCCCCCCCcEEEEEE--CCE-----EeeeeeeCCCCCeEecEEEEEEe----CCCCcEEEEEEeC
Q 031204            5 MGLLRVHVLRGVNLAVRDVVSSDPYVVIKM--GKQ-----LKTRVVKNNVNPEWNEDLTLSIS----DSNLPIKLTVYDK   73 (164)
Q Consensus         5 ~g~L~v~v~~a~~L~~~~~~~~dpyv~v~~--~~~-----~~T~~~~~t~~P~w~e~~~f~~~----~~~~~l~i~v~d~   73 (164)
                      ...+.|+|..+.++........+-||.+.+  +++     .+|+.+. ..+|.|||.+.|++.    ..+..|.|+||+.
T Consensus       354 ~~~f~v~i~~~~~~n~~~~~~~~~~V~~~l~hG~~~L~~~~~T~~~~-~~~~~Wne~l~f~i~i~dLPr~arL~~tl~~~  432 (1091)
T 3hhm_A          354 NSALRIKILCATYVNVNIRDIDKIYVRTGIYHGGEPLCDNVNTQRVP-CSNPRWNEWLNYDIYIPDLPRAARLCLSICSV  432 (1091)
T ss_dssp             CSEEEEEEEEESCCCCCCSSCCCCCEEEEEESSSCSSCCEECCCCCC-TTSCEEEEEEEEEEEGGGCCTTCEEEEEECCC
T ss_pred             CCCEEEEEEEecCCCCCccccceEEEEEEEEECCEEccCceeccccC-CCCCCCCeeEEecCccccCChhcEEEEEEEEe
Confidence            356899999998875433334567887776  333     3444333 457889999999985    2345699999986


Q ss_pred             CCC----CCCceeEEEEEechhhh
Q 031204           74 DTF----SLDDKMGDAEFYITPFL   93 (164)
Q Consensus        74 ~~~----~~~~~lG~~~v~l~~l~   93 (164)
                      ...    ..+..+|.+.+++-+..
T Consensus       433 ~~~~~~~~~~~~lg~~n~~lfd~~  456 (1091)
T 3hhm_A          433 KGRKGAKEEHCPLAWGNINLFDYT  456 (1091)
T ss_dssp             CCCC-------CCEEEEEESBCTT
T ss_pred             cCccCcccccceeEEeeeeeEccC
Confidence            542    13458999999987653

>2yrb_A Protein fantom; beta sandwich, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=94.58  E-value=0.65  Score=31.36  Aligned_cols=91  Identities=16%  Similarity=0.184  Sum_probs=63.6

Q ss_pred             CcccEEEEEEEEEeEcCCCCC---CCCCCcEEEEEEC--CE--EeeeeeeCCCCCeEecEEEEEEeCC--------CCcE
Q 031204            2 ENLMGLLRVHVLRGVNLAVRD---VVSSDPYVVIKMG--KQ--LKTRVVKNNVNPEWNEDLTLSISDS--------NLPI   66 (164)
Q Consensus         2 ~~~~g~L~v~v~~a~~L~~~~---~~~~dpyv~v~~~--~~--~~T~~~~~t~~P~w~e~~~f~~~~~--------~~~l   66 (164)
                      +...+.+.|+|.++.- .+..   .+..+|..-+..+  ..  +.|.++. +.+|.+|-+-.|.+...        ...+
T Consensus        14 ~~gEnlfEihi~~~~~-~~~~l~~~~d~~p~tF~t~dF~dfEtq~Tpv~~-G~~p~y~fts~Y~V~~d~~fl~yL~~~~l   91 (156)
T 2yrb_A           14 ERGENLFEIHINKVTF-SSEVLQASGDKEPVTFCTYAFYDFELQTTPVVR-GLHPEYNFTSQYLVHVNDLFLQYIQKNTI   91 (156)
T ss_dssp             CSSCEEEEEEEEEECC-CHHHHHHHCSSCCEEEEEECSTTCCCEECCCEE-SSSCCCCEEEEEEECCSHHHHHHHHHCCE
T ss_pred             cCCCcEEEEEEeEEEE-cHHHHhhccccCCcEEEEEEEeceEeeeccccc-CCCCCcceEEEEEEEeCHHHHHHHhcCCE
Confidence            3456788899988763 2111   2345665555554  33  7777666 77999999999988532        2468


Q ss_pred             EEEEEeCCCCCCCceeEEEEEechhhhhh
Q 031204           67 KLTVYDKDTFSLDDKMGDAEFYITPFLEA   95 (164)
Q Consensus        67 ~i~v~d~~~~~~~~~lG~~~v~l~~l~~~   95 (164)
                      .++++..... ....+|.++|++.++...
T Consensus        92 ~lELhqa~g~-~~~tla~~~I~l~~lLe~  119 (156)
T 2yrb_A           92 TLEVHQAYST-EYETIAACQLKFHEILEK  119 (156)
T ss_dssp             EEEEEEECSS-CEEEEEEEEECCSHHHHC
T ss_pred             EEEEEEeeCC-CceEEEEEEEEhHHhhCc
Confidence            8999887533 556999999999999865

>3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens}

Probab=93.30  E-value=1.6  Score=31.23  Aligned_cols=53  Identities=13%  Similarity=0.207  Sum_probs=40.6

Q ss_pred             EeeeeeeCCCCCeEecEEEEEEeCC---CCcEEEEEEeCCCCC----CCceeEEEEEech
Q 031204           38 LKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTVYDKDTFS----LDDKMGDAEFYIT   90 (164)
Q Consensus        38 ~~T~~~~~t~~P~w~e~~~f~~~~~---~~~l~i~v~d~~~~~----~~~~lG~~~v~l~   90 (164)
                      ++|.+.....+|.|+|++.+.+...   ..-|.|++++...-.    ....+|-+.++|-
T Consensus        79 ~~S~V~YHnk~P~w~EtIKi~LP~~~~~~~HLlFtFrH~S~~~k~dk~E~pfg~a~lPL~  138 (220)
T 3l4c_A           79 YKSVIYYQVKQPRWFETVKVAIPIEDVNRSHLRFTFRHRSSQDSKDKSEKIFALAFVKLM  138 (220)
T ss_dssp             EECCCCTTCSSCCCCEEEEEEECTTSSTTEEEEEEEEECCCCSSCCCCCCEEEEEEEESB
T ss_pred             EEEEEEEcCCCCCceEeEEEeeChhhcCCeEEEEEEEEecccccccccCCeeEEEEEEcc
Confidence            8888888889999999999999643   234899998765321    2347899999884

>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}

Probab=92.37  E-value=0.21  Score=43.88  Aligned_cols=86  Identities=14%  Similarity=0.226  Sum_probs=54.9

Q ss_pred             cEEEEEEEEEeEcCCCCCCCCCCcEEE--EEECCE-----EeeeeeeCCCCCeEecEEEEEEeC---C-CCcEEEEEEeC
Q 031204            5 MGLLRVHVLRGVNLAVRDVVSSDPYVV--IKMGKQ-----LKTRVVKNNVNPEWNEDLTLSISD---S-NLPIKLTVYDK   73 (164)
Q Consensus         5 ~g~L~v~v~~a~~L~~~~~~~~dpyv~--v~~~~~-----~~T~~~~~t~~P~w~e~~~f~~~~---~-~~~l~i~v~d~   73 (164)
                      ...+.|+|..+.++...+  ..+-|+.  +.-++.     .+|..+.-..+|.|||.+.|++.-   | +..|.|+||+.
T Consensus       352 ~~~f~i~i~~~~~~~~~~--~~~~~V~~~l~~g~~~L~~~~~T~~~~~~~~~~Wnewl~f~i~~~dLPr~a~L~~ti~~~  429 (1092)
T 2y3a_A          352 NNPFQITLVKGNKLNTEE--TVKVHVRAGLFHGTELLCKTVVSSEISGKNDHIWNEQLEFDINICDLPRMARLCFAVYAV  429 (1092)
T ss_dssp             CSEEEEEECCCCCCCCCS--SCCCCCBCCEEETTEESSCCCBCCCCCSSSCCCCCEEEEEEEESSSCCTTCEEEEECCCC
T ss_pred             CCCEEEEEEEeccCCCCC--CceEEEEEEEEECCEEccCceecccccCCCCCccceeEEeCCccccCChhcEEEEEEEEe
Confidence            356889999988876542  3455655  444554     445554446789999999999852   2 45699999986


Q ss_pred             CCC----------------------CCCceeEEEEEechhh
Q 031204           74 DTF----------------------SLDDKMGDAEFYITPF   92 (164)
Q Consensus        74 ~~~----------------------~~~~~lG~~~v~l~~l   92 (164)
                      ...                      ..+..+|.+.+++-+-
T Consensus       430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~lFd~  470 (1092)
T 2y3a_A          430 LDKVKTKKSTKTINPSKYQTIRKAGKVHYPVAWVNTMVFDF  470 (1092)
T ss_dssp             ------------------------------CCEEEEESBCT
T ss_pred             cCccccccccccccccccccccccccccceeEEEeeeeECC
Confidence            311                      0123788888887653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	164
d2cjta1	128	b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no	3e-17
d1wfja_	136	b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr	2e-15
d1a25a_	132	b.7.1.2 (A:) C2 domain from protein kinase c (beta	8e-14
d1w15a_	138	b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi	5e-13
d2ep6a1	126	b.7.1.1 (A:92-217) Multiple C2 and transmembrane d	6e-13
d2cm5a1	137	b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (	3e-12
d2bwqa1	125	b.7.1.2 (A:729-853) Regulating synaptic membrane e	3e-12
d1rsya_	143	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	5e-12
d1gmia_	136	b.7.1.1 (A:) Domain from protein kinase C epsilon	3e-11
d1ugka_	138	b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens	3e-11
d1qasa2	131	b.7.1.1 (A:626-756) PI-specific phospholipase C is	9e-11
d1uowa_	157	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	2e-10
d2nq3a1	133	b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc	6e-10
d1dqva2	145	b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus	3e-09
d1rh8a_	142	b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax	6e-09
d1rlwa_	126	b.7.1.1 (A:) Domain from cytosolic phospholipase A	7e-09
d1dqva1	130	b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus	4e-08
d1wfma_	138	b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapie	4e-07
d2zkmx2	122	b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human	6e-05
d1bdya_	123	b.7.1.1 (A:) Domain from protein kinase C delta {R	5e-04

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 71.3 bits (174), Expect = 3e-17
 Identities = 21/127 (16%), Positives = 44/127 (34%), Gaps = 12/127 (9%)

Query: 5   MGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQLKTRVVKNNVNPEWNEDLTLSISDSNL 64
           M LL V V +      ++    + YV +K+     T +      P W +D    I+  +L
Sbjct: 1   MSLLCVGVKKAKFDGAQE--KFNTYVTLKVQNVKSTTIAVRGSQPSWEQDFMFEINRLDL 58

Query: 65  PIKLTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLE---------GLPNGTIVTKIQPS 115
            + + V++K     D  +G     +    ++ +              + +  I     P+
Sbjct: 59  GLTVEVWNKGLIW-DTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEICGTKDPT 117

Query: 116 RENCLAE 122
               L +
Sbjct: 118 FHRILLD 124

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 66.7 bits (162), Expect = 2e-15
 Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 3/92 (3%)

Query: 6   GLLRVHVLRGVNLAVRDVVS-SDPYVVIKMG--KQLKTRVVKNNVNPEWNEDLTLSISDS 62
           G L V ++    L   D ++  DPYV +      Q           PEWNE    ++S+ 
Sbjct: 10  GTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEG 69

Query: 63  NLPIKLTVYDKDTFSLDDKMGDAEFYITPFLE 94
              +K  ++DKD  + DD +G+A   + P   
Sbjct: 70  TTELKAKIFDKDVGTEDDAVGEATIPLEPVFV 101

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 62.4 bits (151), Expect = 8e-14
 Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 9/91 (9%)

Query: 6   GLLRVHVLRGVNLAVRDVVS-SDPYVVIKM------GKQLKTRVVKNNVNPEWNEDLTLS 58
            +L V V    NL   D    SDPYV +K+        + KT+ +K ++NPEWNE     
Sbjct: 15  EVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQ 74

Query: 59  ISDSNLPIKL--TVYDKDTFSLDDKMGDAEF 87
           + +S+   +L   ++D D  S +D MG   F
Sbjct: 75  LKESDKDRRLSVEIWDWDLTSRNDFMGSLSF 105

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 60.5 bits (146), Expect = 5e-13
 Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 10/92 (10%)

Query: 6   GLLRVHVLRGVNLAVRDVVSS-DPYVVIKMG------KQLKTRVVKNNVNPEWNEDLTLS 58
             L V VL+  +L   DV    DPYV + +        + KT V K   N  +NE     
Sbjct: 15  NTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFD 74

Query: 59  ISDSNLP---IKLTVYDKDTFSLDDKMGDAEF 87
           I   +L    ++  V D +  S ++ +G    
Sbjct: 75  IPCESLEEISVEFLVLDSERGSRNEVIGRLVL 106

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.8 bits (144), Expect = 6e-13
 Identities = 33/118 (27%), Positives = 57/118 (48%), Gaps = 9/118 (7%)

Query: 5   MGLLRVHVLRGVNLAVRDVV-SSDPYVVIKMGKQ-LKTRVVKNNVNPEWNEDLTLSISDS 62
           +G+L+V VL+  +L   D    SDP+ ++++G   L+T  V  N+NPEWN+  T  I D 
Sbjct: 5   VGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDI 64

Query: 63  NLPIKLTVYDKDTFSLDDKMGDAEFYITPFLEA-------LKMRLEGLPNGTIVTKIQ 113
           +  +++TV+D+D     D +G     +    +            LE    G I  ++ 
Sbjct: 65  HDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQPNCYVLKNKDLEQAFKGVIYLEMD 122

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 58.7 bits (141), Expect = 3e-12
 Identities = 35/110 (31%), Positives = 55/110 (50%), Gaps = 10/110 (9%)

Query: 6   GLLRVHVLRGVNLAVRDV-VSSDPYVVI------KMGKQLKTRVVKNNVNPEWNEDLTLS 58
           G L V ++R V+LA  D    SDP+V +          + KT++ K  +NPE+NE+    
Sbjct: 15  GGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYD 74

Query: 59  ISDSNLP---IKLTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLEGLPN 105
           I  S+L    + ++V+D D    +D +G  +  I+   E LK   E L N
Sbjct: 75  IKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECLKN 124

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.2 bits (140), Expect = 3e-12
 Identities = 19/95 (20%), Positives = 39/95 (41%), Gaps = 13/95 (13%)

Query: 6   GLLRVHVLRGVNLAVRDVV-SSDPYVVIKM------GKQLKTRVVKNNVNPEWNEDLTLS 58
             L V +L   +L  R+     +PYV I          + +T+ VK  + P+WN+    S
Sbjct: 14  HQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYS 73

Query: 59  I----SDSNLPIKLTVYDKDTFSLD--DKMGDAEF 87
                      +++T++D+     +  + +G+   
Sbjct: 74  PVHRREFRERMLEITLWDQARVREEESEFLGEILI 108

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 57.8 bits (139), Expect = 5e-12
 Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 8/90 (8%)

Query: 6   GLLRVHVLRGVNLAVRDVV-SSDPYVVIKMGKQ----LKTRVVKNNVNPEWNEDLTLSIS 60
             L V +++   L   D+  +SDPYV + +        +T+V +  +NP +NE  T  + 
Sbjct: 34  NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVP 93

Query: 61  DSNLP---IKLTVYDKDTFSLDDKMGDAEF 87
            S L    + + VYD D FS  D +G+ + 
Sbjct: 94  YSELGGKTLVMAVYDFDRFSKHDIIGEFKV 123

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

 Score = 56.1 bits (134), Expect = 3e-11
 Identities = 22/131 (16%), Positives = 44/131 (33%), Gaps = 19/131 (14%)

Query: 1   MENLMGLLRVHVLRGVNLAVRDVV------------SSDPYVVIKMG--KQLKTRVVKNN 46
           M    GLL++ +   V+L                    DPY+ + +   +  +T   +  
Sbjct: 1   MVVFNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKT 60

Query: 47  VNPEWNEDLTLSISDSNLPIKLTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLEG---- 102
            +P W+++    + +    I+L V+       DD + +        L+      E     
Sbjct: 61  NSPAWHDEFVTDVCNGR-KIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDL 119

Query: 103 LPNGTIVTKIQ 113
            P G +   I 
Sbjct: 120 EPEGKVYVIID 130

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.5 bits (133), Expect = 3e-11
 Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 10/92 (10%)

Query: 6   GLLRVHVLRGVNLAVRDVVS--SDPYVVIKMGKQLK----TRVVKNNVNPEWNEDLTLSI 59
               V++     L   D  S  SDPY+ + +  + K    TRV++  ++P ++E  T   
Sbjct: 22  KAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYG 81

Query: 60  SDS----NLPIKLTVYDKDTFSLDDKMGDAEF 87
                   L +  T+   D FS DD +G+   
Sbjct: 82  IPYTQIQELALHFTILSFDRFSRDDIIGEVLI 113

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 54.4 bits (130), Expect = 9e-11
 Identities = 27/123 (21%), Positives = 51/123 (41%), Gaps = 17/123 (13%)

Query: 8   LRVHVLRGVNLAVRDVVS---SDPYVVIKMG------KQLKTRVVKNN-VNPEWNEDLTL 57
           LRV ++ G  L   +       DP V++++          +T V+ NN  NP W+ +   
Sbjct: 6   LRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEF 65

Query: 58  SISDSNL-PIKLTVYDKDTFSLDDKMGDAEFYITPFLEA------LKMRLEGLPNGTIVT 110
            ++  +L  ++  V D D+ S +D +G +        +       L    +  P+ T+  
Sbjct: 66  EVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQGYRHVHLLSKNGDQHPSATLFV 125

Query: 111 KIQ 113
           KI 
Sbjct: 126 KIS 128

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 54.1 bits (129), Expect = 2e-10
 Identities = 32/110 (29%), Positives = 47/110 (42%), Gaps = 10/110 (9%)

Query: 6   GLLRVHVLRGVNLAVRDVVS-SDPYVVIKMG------KQLKTRVVKNNVNPEWNEDLTLS 58
           G L V +L   NL   DV   SDPYV I +       K+ KT + KN +NP +NE  +  
Sbjct: 25  GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 84

Query: 59  ISDSNL---PIKLTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLEGLPN 105
           +    +    + +TV D D    +D +G            L+   + L N
Sbjct: 85  VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLAN 134

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.1 bits (124), Expect = 6e-10
 Identities = 23/104 (22%), Positives = 44/104 (42%), Gaps = 3/104 (2%)

Query: 3   NLMGLLRVHVLRGVNLAVRDVV-SSDPYVVIKMGKQ-LKTRVVKNNVNPEWNEDLTLSIS 60
            +   L++ V+       +       PYV + +  Q  KT    N  +P+W + LT+ ++
Sbjct: 3   TMKSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVT 62

Query: 61  DSNLPIKLTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLEGLP 104
             +  +   V+   T   D  +G A   I   L++  M+LE + 
Sbjct: 63  PVS-KLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVV 105

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 50.6 bits (120), Expect = 3e-09
 Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 10/93 (10%)

Query: 5   MGLLRVHVLRGVNLAVRDVVSS-DPYVVIKMGKQLK------TRVVKNNVNPEWNEDLTL 57
            GLL V +++  NL   D+    DPYV   +  + +      T + KN +NP +NE L  
Sbjct: 19  AGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVF 78

Query: 58  SISDS---NLPIKLTVYDKDTFSLDDKMGDAEF 87
            ++     N+ + + V D D    ++ +G    
Sbjct: 79  DVAPESVENVGLSIAVVDYDCIGHNEVIGVCRV 111

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 49.9 bits (118), Expect = 6e-09
 Identities = 27/103 (26%), Positives = 49/103 (47%), Gaps = 20/103 (19%)

Query: 5   MGLLRVHVLRGVNLAVRDVVS-SDPYVVIKMG---------------KQLKTRVVKNNVN 48
           +G L +H+L+  NL  RD    SDP+V + +                 + +T+ V+ ++N
Sbjct: 17  LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLN 76

Query: 49  PEWNEDLTLSISD----SNLPIKLTVYDKDTFSLDDKMGDAEF 87
           PEWN+ +              +++TV+D D FS +D +G+   
Sbjct: 77  PEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLI 119

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.3 bits (117), Expect = 7e-09
 Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 10/89 (11%)

Query: 8  LRVHVLRGVNLAVRDVV----SSDPYVVIKMG----KQLKTRVVKNNVNPEWNEDLTLSI 59
            V VLR   +          + DPYV + +      + +TR   N++NP WNE     +
Sbjct: 5  FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFIL 64

Query: 60 SDSNL-PIKLTVYDKDTFSLDDKMGDAEF 87
            +    +++T+ D +    D+ +G A F
Sbjct: 65 DPNQENVLEITLMDANYVM-DETLGTATF 92

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 130

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.6 bits (112), Expect = 4e-08
 Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 8/90 (8%)

Query: 6   GLLRVHVLRGVNLAVRDV-VSSDPYVVIKMGKQ----LKTRVVKNNVNPEWNEDLTLSIS 60
             L V +L+ ++L  +D    SDPYV I +        +T+V +  +NP +NE    S+ 
Sbjct: 18  DQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVP 77

Query: 61  DSNLP---IKLTVYDKDTFSLDDKMGDAEF 87
            + L    +  +VYD D FS  D +G    
Sbjct: 78  LAELAQRKLHFSVYDFDRFSRHDLIGQVVL 107

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (104), Expect = 4e-07
 Identities = 21/92 (22%), Positives = 34/92 (36%), Gaps = 10/92 (10%)

Query: 6   GLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQ-----LKTRVVKNNVNPEWNEDLTLSIS 60
             L V  L  V          D YV   +  +      +T + K  ++  W E L L ++
Sbjct: 26  AELFVTRLEAVTSNHDG--GCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLA 83

Query: 61  DSNLP---IKLTVYDKDTFSLDDKMGDAEFYI 89
           +  LP   + LT+   D FS     G+    +
Sbjct: 84  EEELPTATLTLTLRTCDRFSRHSVAGELRLGL 115

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (89), Expect = 6e-05
 Identities = 15/79 (18%), Positives = 35/79 (44%), Gaps = 15/79 (18%)

Query: 8  LRVHVLRGVNLAVRDVVSSDPYVVIKM-------GKQLKTRVV--KNNVNPEWNEDLTLS 58
          L + V+ G  L+ R V     YV +++        ++ +T++    N++NP W E+  + 
Sbjct: 3  LSITVISGQFLSERSV---RTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVF 59

Query: 59 ISDSNLP---IKLTVYDKD 74
                    +++ V ++ 
Sbjct: 60 EKILMPELASLRVAVMEEG 78

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 123

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.9 bits (82), Expect = 5e-04
 Identities = 10/66 (15%), Positives = 20/66 (30%), Gaps = 7/66 (10%)

Query: 25 SSDPYVVIKMG------KQLKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSL 78
          +S P+  +KM       +       K  + PEW       I      I++ +       +
Sbjct: 23 ASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHI-YEGRVIQIVLMRAAEDPM 81

Query: 79 DDKMGD 84
           +    
Sbjct: 82 SEVTVG 87

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	164
d1wfja_	136	C2 domain protein At1g63220 {Thale cress (Arabidop	99.95
d2ep6a1	126	Multiple C2 and transmembrane domain-containing pr	99.95
d1gmia_	136	Domain from protein kinase C epsilon {Rat (Rattus	99.93
d1rlwa_	126	Domain from cytosolic phospholipase A2 {Human (Hom	99.93
d2nq3a1	133	E3 ubiquitin-protein ligase Itchy {Human (Homo sap	99.93
d1a25a_	132	C2 domain from protein kinase c (beta) {Rat (Rattu	99.89
d2cjta1	128	Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId:	99.87
d1qasa2	131	PI-specific phospholipase C isozyme D1 (PLC-D1), C	99.87
d1rsya_	143	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.86
d1dqva1	130	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.84
d1rh8a_	142	Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}	99.84
d1bdya_	123	Domain from protein kinase C delta {Rat (Rattus no	99.81
d2cm5a1	137	C2b-domain of rabphilin {Rat (Rattus norvegicus) [	99.81
d1ugka_	138	Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960	99.8
d2bwqa1	125	Regulating synaptic membrane exocytosis protein, r	99.8
d1uowa_	157	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.79
d1wfma_	138	Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9	99.79
d1w15a_	138	Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId:	99.77
d1dqva2	145	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.72
d2zkmx2	122	Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI	99.64
d1e7ua2	174	Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa)	97.19
d2yrba1	142	Fantom {Human (Homo sapiens) [TaxId: 9606]}	94.8

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.95  E-value=2.2e-27  Score=159.58  Aligned_cols=126  Identities=25%  Similarity=0.411  Sum_probs=107.8

Q ss_pred             CcccEEEEEEEEEeEcCCCCC-CCCCCcEEEEEECCE-EeeeeeeC-CCCCeEecEEEEEEeCCCCcEEEEEEeCCCCCC
Q 031204            2 ENLMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQ-LKTRVVKN-NVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSL   78 (164)
Q Consensus         2 ~~~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~~-~~T~~~~~-t~~P~w~e~~~f~~~~~~~~l~i~v~d~~~~~~   78 (164)
                      ..+.|+|.|+|++|++|+..+ .+++||||++.++++ .+|+++++ +.||.|||+|.|.+......|.|+|||++.+++
T Consensus         6 ~~p~G~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~t~~~~~~~~nP~Wne~f~f~v~~~~~~L~v~V~d~d~~~~   85 (136)
T d1wfja_           6 SGPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTTELKAKIFDKDVGTE   85 (136)
T ss_dssp             CCCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEESSCCEEEEEECCSSSCTT
T ss_pred             CCCcEEEEEEEEEeeCCCCCCCCCCCCccEEEEEeeeeEEEEEEecCCCcEEEeeEEEEEEcCccceEEEEEEEecCCCC
Confidence            468899999999999999998 889999999999988 88888874 889999999999998777779999999999989


Q ss_pred             CceeEEEEEechhhhhhhcccccCCCCceEEEEeccCCCccccccceeEeeCCeEEEEEeEEec--ccceeeEEEEEEEE
Q 031204           79 DDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLR--NVEVGEVKIQLEWI  156 (164)
Q Consensus        79 ~~~lG~~~v~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~--~~~~G~l~l~l~~~  156 (164)
                      |++||++.|+|.++.....                                    ....|+.+.  +...|+|+|.++|.
T Consensus        86 d~~iG~~~i~L~~l~~~~~------------------------------------~~~~~~~l~~~~~~~G~i~l~l~~~  129 (136)
T d1wfja_          86 DDAVGEATIPLEPVFVEGS------------------------------------IPPTAYNVVKDEEYKGEIWVALSFK  129 (136)
T ss_dssp             TCCSEEEEEESHHHHHHSE------------------------------------EEEEEEEEEETTEEEEEEEEEEEEE
T ss_pred             CCEEEEEEEEhHHhcccCC------------------------------------cCcEEEEecCCCccCEEEEEEEEEE
Confidence            9999999999999876432                                    124556553  44579999999999


Q ss_pred             ecCCCCC
Q 031204          157 DIPGSRG  163 (164)
Q Consensus       157 ~~~~~~~  163 (164)
                      |...+.|
T Consensus       130 p~~p~~g  136 (136)
T d1wfja_         130 PSGPSSG  136 (136)
T ss_dssp             ECCSCCC
T ss_pred             eCCCCCC
Confidence            9777655

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=8.5e-28  Score=159.67  Aligned_cols=93  Identities=31%  Similarity=0.569  Sum_probs=86.6

Q ss_pred             cccEEEEEEEEEeEcCCCCC-CCCCCcEEEEEECCE-EeeeeeeCCCCCeEecEEEEEEeCCCCcEEEEEEeCCCCCCCc
Q 031204            3 NLMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQ-LKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSLDD   80 (164)
Q Consensus         3 ~~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~~-~~T~~~~~t~~P~w~e~~~f~~~~~~~~l~i~v~d~~~~~~~~   80 (164)
                      .++|.|+|+|++|++|++++ .|.+||||++.++++ ++|+++.++.||.|||+|.|.+.++...|.|+|||++.+++|+
T Consensus         3 ~~~G~L~V~v~~A~~L~~~d~~g~~Dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~v~~~~~~L~i~V~d~~~~~~d~   82 (126)
T d2ep6a1           3 KDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHDVLEVTVFDEDGDKPPD   82 (126)
T ss_dssp             CCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEESCTTCEEEEEEEEEETTEEEE
T ss_pred             CccEEEEEEEEEeECCCCCCCCCCcCeEEEEEcCCeEEEEEeeCCceeEEEEEEEEEEEeccCceeEEEEEEccCCcCcc
Confidence            46899999999999999998 889999999999999 9999999999999999999999877788999999999998899


Q ss_pred             eeEEEEEechhhhhh
Q 031204           81 KMGDAEFYITPFLEA   95 (164)
Q Consensus        81 ~lG~~~v~l~~l~~~   95 (164)
                      +||++.+++.++..+
T Consensus        83 ~lG~~~i~l~~l~~~   97 (126)
T d2ep6a1          83 FLGKVAIPLLSIRDG   97 (126)
T ss_dssp             ECCBCEEEGGGCCSS
T ss_pred             eEEEEEEEHHHCCCC
Confidence            999999999887553

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=99.93  E-value=3.1e-25  Score=149.01  Aligned_cols=121  Identities=17%  Similarity=0.361  Sum_probs=104.8

Q ss_pred             CCcccEEEEEEEEEeEcCCCCC------------CCCCCcEEEEEECCE--EeeeeeeCCCCCeEecEEEEEEeCCCCcE
Q 031204            1 MENLMGLLRVHVLRGVNLAVRD------------VVSSDPYVVIKMGKQ--LKTRVVKNNVNPEWNEDLTLSISDSNLPI   66 (164)
Q Consensus         1 ~~~~~g~L~v~v~~a~~L~~~~------------~~~~dpyv~v~~~~~--~~T~~~~~t~~P~w~e~~~f~~~~~~~~l   66 (164)
                      |+=..|.|.|+|++|++|++.+            .+.+||||+++++++  .+|+++.++.+|.|||+|.|.+.+ .+.|
T Consensus         1 ~~~~~G~L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l~~~~~~~T~~~~~t~~P~Wne~f~f~v~~-~~~l   79 (136)
T d1gmia_           1 MVVFNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCN-GRKI   79 (136)
T ss_dssp             CCCEEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEE-ECEE
T ss_pred             CccEEEEEEEEEEEeECCCcccccccccccccCCCCCcCcEEEEEeCCCcCcEeeEEcCCCCccCccEEEEEEec-CCce
Confidence            6667899999999999998742            457899999999987  789999999999999999999974 4579


Q ss_pred             EEEEEeCCCCCCCceeEEEEEechhhhhhhcccccCCCCceEEEEeccCCCccccccceeEeeCCeEEEEEeEEecccce
Q 031204           67 KLTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRNVEV  146 (164)
Q Consensus        67 ~i~v~d~~~~~~~~~lG~~~v~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~  146 (164)
                      .|+|||++.+++|++||.+.+++.++..+...                                   ..+.|++|+  +.
T Consensus        80 ~i~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~-----------------------------------~~~~w~~L~--p~  122 (136)
T d1gmia_          80 ELAVFHDAPIGYDDFVANCTIQFEELLQNGSR-----------------------------------HFEDWIDLE--PE  122 (136)
T ss_dssp             EEEEEECCSSSSCEEEEEEEEEHHHHTSTTCS-----------------------------------EEEEEEECB--SS
T ss_pred             EEEEEEecCCCCceeEEEEEEEHHHhhhcCCc-----------------------------------ceeEEEeCC--CC
Confidence            99999999998999999999999998765432                                   348899997  78


Q ss_pred             eeEEEEEEEEecC
Q 031204          147 GEVKIQLEWIDIP  159 (164)
Q Consensus       147 G~l~l~l~~~~~~  159 (164)
                      |+|++++++.+..
T Consensus       123 G~v~l~v~~~~~~  135 (136)
T d1gmia_         123 GKVYVIIDLSGSS  135 (136)
T ss_dssp             CEEEEEEEEEEEE
T ss_pred             cEEEEEEEEEeCC
Confidence            9999999998754

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.7e-25  Score=148.26  Aligned_cols=115  Identities=23%  Similarity=0.408  Sum_probs=100.3

Q ss_pred             cEEEEEEEEEeEcCCCCC----CCCCCcEEEEEECC---E-EeeeeeeCCCCCeEecEEEEEEeCCC-CcEEEEEEeCCC
Q 031204            5 MGLLRVHVLRGVNLAVRD----VVSSDPYVVIKMGK---Q-LKTRVVKNNVNPEWNEDLTLSISDSN-LPIKLTVYDKDT   75 (164)
Q Consensus         5 ~g~L~v~v~~a~~L~~~~----~~~~dpyv~v~~~~---~-~~T~~~~~t~~P~w~e~~~f~~~~~~-~~l~i~v~d~~~   75 (164)
                      .++|+|+|++|+||+...    .+.+||||++.+++   + ++|+++.++.||.|||+|.|.+.... ..|.|+|||++.
T Consensus         2 s~~l~V~v~~a~~L~~~~~~d~~~~~Dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~f~i~~~~~~~L~v~V~d~d~   81 (126)
T d1rlwa_           2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY   81 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCS
T ss_pred             CcEEEEEEEEccCCCCccccccCCCCCcEEEEEECCcccceeEeeecCCCccceeceeeeecccCcccCcEEEEEEECCC
Confidence            478999999999999754    57899999999975   3 89999999999999999999997654 469999999987


Q ss_pred             CCCCceeEEEEEechhhhhhhcccccCCCCceEEEEeccCCCccccccceeEeeCCeEEEEEeEEecccceeeEEEEEEE
Q 031204           76 FSLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRNVEVGEVKIQLEW  155 (164)
Q Consensus        76 ~~~~~~lG~~~v~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~G~l~l~l~~  155 (164)
                      . +|++||++.++|.++..+..                                     .+.|++|.....|+|++.|++
T Consensus        82 ~-~d~~lG~~~i~L~~l~~~~~-------------------------------------~~~~~~L~~~~~g~i~~~l~~  123 (126)
T d1rlwa_          82 V-MDETLGTATFTVSSMKVGEK-------------------------------------KEVPFIFNQVTEMVLEMSLEV  123 (126)
T ss_dssp             S-CCEEEEEEEEEGGGSCTTCE-------------------------------------EEEEEEETTTEEEEEEEEEEC
T ss_pred             C-CCCeEEEEEEEHHHccCCCe-------------------------------------EEEEEEccCCCeEEEEEEEEE
Confidence            6 78999999999998865432                                     388999999999999999998


Q ss_pred             Ee
Q 031204          156 ID  157 (164)
Q Consensus       156 ~~  157 (164)
                      .+
T Consensus       124 ~~  125 (126)
T d1rlwa_         124 AS  125 (126)
T ss_dssp             CC
T ss_pred             Ee
Confidence            76

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.3e-24  Score=145.48  Aligned_cols=92  Identities=22%  Similarity=0.362  Sum_probs=83.8

Q ss_pred             ccEEEEEEEEEeEcCCCCC-CCCCCcEEEEEECCE-EeeeeeeCCCCCeEecEEEEEEeCCCCcEEEEEEeCCCCCCCce
Q 031204            4 LMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQ-LKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSLDDK   81 (164)
Q Consensus         4 ~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~~-~~T~~~~~t~~P~w~e~~~f~~~~~~~~l~i~v~d~~~~~~~~~   81 (164)
                      ..+.|.|+|++|++++..+ .+.+||||++.++++ ++|++++++.||.|||.|.|.+. +...|.|+|||++.+++|++
T Consensus         4 ~~~~L~v~v~~A~~~~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~~~-~~~~l~~~V~d~d~~~~d~~   82 (133)
T d2nq3a1           4 MKSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVT-PVSKLHFRVWSHQTLKSDVL   82 (133)
T ss_dssp             CCEEEEEEEEEEEECCCC--CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEEC-TTCEEEEEEEECCSSSCCEE
T ss_pred             cceEEEEEEEEeECCCcCCCCCCcCeEEEEEECCeEEeeEEEEecccEEEcceEEEEEE-ecceeEEEEEEccCCCCCce
Confidence            4589999999999999877 788999999999999 99999999999999999999986 45679999999999999999


Q ss_pred             eEEEEEechhhhhhh
Q 031204           82 MGDAEFYITPFLEAL   96 (164)
Q Consensus        82 lG~~~v~l~~l~~~~   96 (164)
                      ||++.++|.++....
T Consensus        83 iG~~~i~L~~l~~~~   97 (133)
T d2nq3a1          83 LGTAALDIYETLKSN   97 (133)
T ss_dssp             EEEEEEEHHHHHHHT
T ss_pred             EEEEEEEHHHhhhhc
Confidence            999999999987654

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.89  E-value=3e-23  Score=138.47  Aligned_cols=90  Identities=33%  Similarity=0.492  Sum_probs=80.1

Q ss_pred             cEEEEEEEEEeEcCCCCC-CCCCCcEEEEEEC-----CE-EeeeeeeCCCCCeEecEEEEEEeCC--CCcEEEEEEeCCC
Q 031204            5 MGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMG-----KQ-LKTRVVKNNVNPEWNEDLTLSISDS--NLPIKLTVYDKDT   75 (164)
Q Consensus         5 ~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~-----~~-~~T~~~~~t~~P~w~e~~~f~~~~~--~~~l~i~v~d~~~   75 (164)
                      .+.|.|+|++|+||+.++ .+.+||||++++.     .. ++|+++.++.||.|||+|.|.+...  ...|.|+|||++.
T Consensus        14 ~~~L~V~V~~a~~L~~~d~~g~~DpYv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~   93 (132)
T d1a25a_          14 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDL   93 (132)
T ss_dssp             SSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECCS
T ss_pred             CCEEEEEEEeeeCCCCCCCCCCcCeEEEEEEccCCCCccccEEeeecCCCCCccceEEEEEeEccccCCEEeEEEEecCC
Confidence            478999999999999998 7889999999983     23 8999999999999999999998654  3469999999999


Q ss_pred             CCCCceeEEEEEechhhhh
Q 031204           76 FSLDDKMGDAEFYITPFLE   94 (164)
Q Consensus        76 ~~~~~~lG~~~v~l~~l~~   94 (164)
                      +++|++||.+.+++.++..
T Consensus        94 ~~~d~~iG~~~i~l~~l~~  112 (132)
T d1a25a_          94 TSRNDFMGSLSFGISELQK  112 (132)
T ss_dssp             SSCCEEEEEEEEEHHHHTT
T ss_pred             CCCCcEeEEEEEeHHHcCC
Confidence            9899999999999998754

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.87  E-value=1.1e-21  Score=129.91  Aligned_cols=87  Identities=22%  Similarity=0.385  Sum_probs=78.6

Q ss_pred             cEEEEEEEEEeEcCCCCCCCCCCcEEEEEECCE-EeeeeeeCCCCCeEecEEEEEEeCCCCcEEEEEEeCCCCCCCceeE
Q 031204            5 MGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQ-LKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSLDDKMG   83 (164)
Q Consensus         5 ~g~L~v~v~~a~~L~~~~~~~~dpyv~v~~~~~-~~T~~~~~t~~P~w~e~~~f~~~~~~~~l~i~v~d~~~~~~~~~lG   83 (164)
                      ++.|.|+|.+|++|.+++  +.||||+++++++ .+|.++++ .||.|||+|.|.+..+...|.|+|||++.. +|++||
T Consensus         1 ~~~L~V~v~~a~~l~~~~--~~dpYv~l~~~~~k~~T~~~k~-~nP~Wne~f~f~v~~~~~~L~v~V~d~~~~-~d~~lG   76 (128)
T d2cjta1           1 MSLLCVGVKKAKFDGAQE--KFNTYVTLKVQNVKSTTIAVRG-SQPSWEQDFMFEINRLDLGLTVEVWNKGLI-WDTMVG   76 (128)
T ss_dssp             CEEEEEEEEEEECSSCGG--GCEEEEEEEETTEEEECCCEES-SSCEEEEEEEEEECCCSSEEEEEEEECCSS-CEEEEE
T ss_pred             CeEEEEEEEEEECCCCCC--CcCeEEEEEeCCEEEEEEEecC-CCCeEEEEEEEeeccccceEEEEEEeCCCc-CCcceE
Confidence            478999999999999876  7899999999999 99988864 599999999999998888899999999987 699999


Q ss_pred             EEEEechhhhhh
Q 031204           84 DAEFYITPFLEA   95 (164)
Q Consensus        84 ~~~v~l~~l~~~   95 (164)
                      ++.|+|+++..+
T Consensus        77 ~~~I~L~~l~~~   88 (128)
T d2cjta1          77 TVWIPLRTIRQS   88 (128)
T ss_dssp             EEEEEGGGSCBC
T ss_pred             EEEEEehhhccC
Confidence            999999998654

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.87  E-value=6.8e-21  Score=126.75  Aligned_cols=89  Identities=22%  Similarity=0.422  Sum_probs=74.6

Q ss_pred             EEEEEEEEEeEcCCCCC---CCCCCcEEEEEEC-----CE-EeeeeeeC-CCCCeEecEEEEEEeCCC-CcEEEEEEeCC
Q 031204            6 GLLRVHVLRGVNLAVRD---VVSSDPYVVIKMG-----KQ-LKTRVVKN-NVNPEWNEDLTLSISDSN-LPIKLTVYDKD   74 (164)
Q Consensus         6 g~L~v~v~~a~~L~~~~---~~~~dpyv~v~~~-----~~-~~T~~~~~-t~~P~w~e~~~f~~~~~~-~~l~i~v~d~~   74 (164)
                      .+|+|+|++|++|+..+   .+.+||||++++.     .+ .+|+++++ +.||.|||+|.|.+..+. ..|.|+|||++
T Consensus         4 ~~l~V~Vi~a~~L~~~~~~~~~~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wne~f~f~~~~~~~~~L~~~V~D~d   83 (131)
T d1qasa2           4 ERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVEDYD   83 (131)
T ss_dssp             EEEEEEEEEEESCCCCC-----CCCEEEEEEEESSTTTCEEEECCCCSSCSSSCEEEEEEEEEESCGGGCEEEEEEEECC
T ss_pred             EEEEEEEEEeeCCCCCCCCCCCCcCeEEEEEEccCCCCcEEEEEEEEecccCCceEEEEEEEEEEcchhceEEEEEEEec
Confidence            57999999999998654   6789999999984     34 88998776 579999999999987554 45999999999


Q ss_pred             CCCCCceeEEEEEechhhhh
Q 031204           75 TFSLDDKMGDAEFYITPFLE   94 (164)
Q Consensus        75 ~~~~~~~lG~~~v~l~~l~~   94 (164)
                      ..++|++||++.++|..+..
T Consensus        84 ~~~~d~~iG~~~i~l~~l~~  103 (131)
T d1qasa2          84 SSSKNDFIGQSTIPWNSLKQ  103 (131)
T ss_dssp             TTTCCEEEEEEEEEGGGBCC
T ss_pred             CCCCCcEEEEEEEEEeccCC
Confidence            99899999999999987754

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.86  E-value=1.8e-21  Score=131.40  Aligned_cols=92  Identities=28%  Similarity=0.423  Sum_probs=80.4

Q ss_pred             ccEEEEEEEEEeEcCCCCC-CCCCCcEEEEEEC---CE-EeeeeeeCCCCCeEecEEEEEEeCC---CCcEEEEEEeCCC
Q 031204            4 LMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMG---KQ-LKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTVYDKDT   75 (164)
Q Consensus         4 ~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~---~~-~~T~~~~~t~~P~w~e~~~f~~~~~---~~~l~i~v~d~~~   75 (164)
                      ..+.|.|+|++|+||++++ .+.+||||++.+.   .. ++|++++++.||.|||+|.|.+...   ...|.|+|||++.
T Consensus        32 ~~~~L~V~V~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~kT~~~~~t~~P~wne~f~f~i~~~~l~~~~L~i~V~d~d~  111 (143)
T d1rsya_          32 QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDR  111 (143)
T ss_dssp             TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCS
T ss_pred             CCCEEEEEEEEccCCCCCCCCCCCCeEEEEEEcCCCCeeEEEEEeccccCcceeeeeEEEEEeeccCCceEEEEEEEcCC
Confidence            3468999999999999888 7899999999984   33 9999999999999999999988532   4569999999999


Q ss_pred             CCCCceeEEEEEechhhhhh
Q 031204           76 FSLDDKMGDAEFYITPFLEA   95 (164)
Q Consensus        76 ~~~~~~lG~~~v~l~~l~~~   95 (164)
                      ++++++||++.|+|.++..+
T Consensus       112 ~~~~~~iG~~~i~L~~~~~~  131 (143)
T d1rsya_         112 FSKHDIIGEFKVPMNTVDFG  131 (143)
T ss_dssp             SSCCEEEEEEEEEGGGCCCS
T ss_pred             CCCCcEEEEEEEEchhccCC
Confidence            98999999999999987554

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.84  E-value=5.1e-21  Score=127.18  Aligned_cols=89  Identities=29%  Similarity=0.429  Sum_probs=78.4

Q ss_pred             cccEEEEEEEEEeEcCCCCC-CCCCCcEEEEEECC---E-EeeeeeeCCCCCeEecEEEEEEeCC---CCcEEEEEEeCC
Q 031204            3 NLMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGK---Q-LKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTVYDKD   74 (164)
Q Consensus         3 ~~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~---~-~~T~~~~~t~~P~w~e~~~f~~~~~---~~~l~i~v~d~~   74 (164)
                      ...++|.|+|++|+||+.++ .+.+||||++++.+   + ++|++++++.||.|||+|.|.+...   ...|.|+|||++
T Consensus        15 ~~~~~L~V~V~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~~~~~~L~v~V~d~~   94 (130)
T d1dqva1          15 YGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFD   94 (130)
T ss_dssp             SSSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEECC
T ss_pred             CCCCEEEEEEEeeeCCccccCCCCcceEEEEEEccCCCceEeceeEcCCCCeeeeeEEEEEEchHHcCCCeEEEEEEEcC
Confidence            45689999999999999888 78999999999853   3 9999999999999999999998543   356999999999


Q ss_pred             CCCCCceeEEEEEechh
Q 031204           75 TFSLDDKMGDAEFYITP   91 (164)
Q Consensus        75 ~~~~~~~lG~~~v~l~~   91 (164)
                      .++++++||++.|++..
T Consensus        95 ~~~~d~~iG~~~i~~~~  111 (130)
T d1dqva1          95 RFSRHDLIGQVVLDNLL  111 (130)
T ss_dssp             SSSCCCEEEEEECCCTT
T ss_pred             CCCCCceEEEEEECchh
Confidence            99999999999998654

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.84  E-value=6.1e-22  Score=133.43  Aligned_cols=93  Identities=29%  Similarity=0.473  Sum_probs=80.1

Q ss_pred             cEEEEEEEEEeEcCCCCC-CCCCCcEEEEEECC--------------E-EeeeeeeCCCCCeEecEEEEEEeC----CCC
Q 031204            5 MGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGK--------------Q-LKTRVVKNNVNPEWNEDLTLSISD----SNL   64 (164)
Q Consensus         5 ~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~--------------~-~~T~~~~~t~~P~w~e~~~f~~~~----~~~   64 (164)
                      .|.|.|+|++|+||++++ .+.+||||++++.+              . ++|++++++.||.|||+|.|....    ...
T Consensus        17 ~~~L~V~V~~A~~L~~~d~~g~~DpyV~v~l~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~   96 (142)
T d1rh8a_          17 LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKK   96 (142)
T ss_dssp             TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTC
T ss_pred             CCEEEEEEEEeECCCCcCCCCCCCcCEEEEEecCcccccccccCCCceeeeccCCcCCCCceeEEEEEEeeecccccCCC
Confidence            578999999999999998 88999999999842              1 578899999999999999998532    245


Q ss_pred             cEEEEEEeCCCCCCCceeEEEEEechhhhhhhc
Q 031204           65 PIKLTVYDKDTFSLDDKMGDAEFYITPFLEALK   97 (164)
Q Consensus        65 ~l~i~v~d~~~~~~~~~lG~~~v~l~~l~~~~~   97 (164)
                      .|.|+|||++.++++++||++.|+|.++.....
T Consensus        97 ~L~i~V~d~d~~~~~~~lG~~~i~L~~l~~~~~  129 (142)
T d1rh8a_          97 TLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDN  129 (142)
T ss_dssp             EEEEEEEEECSSSCEEEEEEEEEETTSCGGGTT
T ss_pred             EEEEEEEEecCCCCCeeeEEEEEEhHHcCCCCC
Confidence            699999999999899999999999999876543

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.81  E-value=2e-19  Score=118.29  Aligned_cols=110  Identities=16%  Similarity=0.271  Sum_probs=85.3

Q ss_pred             EEEEEEEeEcCCCCCCCCCCcEEEEEECCE------EeeeeeeCCCCCeEecEEEEEEeCCCCcEEEEEEeCCCCCCCce
Q 031204            8 LRVHVLRGVNLAVRDVVSSDPYVVIKMGKQ------LKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSLDDK   81 (164)
Q Consensus         8 L~v~v~~a~~L~~~~~~~~dpyv~v~~~~~------~~T~~~~~t~~P~w~e~~~f~~~~~~~~l~i~v~d~~~~~~~~~   81 (164)
                      +.|.+..+..++.. .+.+||||++++.+.      .+|++.++|.||.|||+|.|.+.+ .+.|.|.|||++    +++
T Consensus         7 ~~~~~~~~~~~~~~-~~~~dPY~~v~l~~~~~~~~~~~t~~~kkT~nP~WnE~F~~~v~~-~~~l~i~V~d~d----d~~   80 (123)
T d1bdya_           7 ISFNSYELGSLQAE-DDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYE-GRVIQIVLMRAA----EDP   80 (123)
T ss_dssp             EEEEEEECCTTCCC-CCSCCCEEEEEEEEECCGGGTTBEEECSCCBCCCTTCEEEEECCT-TCEEEEEEEEET----TEE
T ss_pred             EEEEEeecccCCCC-CCCCCCEEEEEEcCccccccceEEEEeCCCCCcccceEEEEEEcc-ccEEEEEEEEcc----ccc
Confidence            34444444443333 678999999999642      668888999999999999999974 467999999975    689


Q ss_pred             eEEEEEechhhhhhhcccccCCCCceEEEEeccCCCccccccceeEeeCCeEEEEEeEEecccceeeEEEEEEEEe
Q 031204           82 MGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRNVEVGEVKIQLEWID  157 (164)
Q Consensus        82 lG~~~v~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~G~l~l~l~~~~  157 (164)
                      +|.+.+.+.++......                               .+ ...+.|++|+  +.|+|+++++|..
T Consensus        81 ~g~~~i~l~~l~~~~~~-------------------------------~~-~~~~~W~~L~--~~Gkl~l~v~~f~  122 (123)
T d1bdya_          81 MSEVTVGVSVLAERCKK-------------------------------NN-GKAEFWLDLQ--PQAKVLMCVQYFL  122 (123)
T ss_dssp             EEEEEEEHHHHHHHHHT-------------------------------TT-TEEEEEEECB--SSCEEEEEEEEEE
T ss_pred             cCccEEehhheeecccc-------------------------------CC-CcccEEEeCC--CCEEEEEEEEEec
Confidence            99999999998765322                               01 1358999997  8999999999975

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.81  E-value=1.6e-19  Score=120.65  Aligned_cols=93  Identities=31%  Similarity=0.425  Sum_probs=80.3

Q ss_pred             cccEEEEEEEEEeEcCCCCC-CCCCCcEEEEEECC-----E-EeeeeeeCCCCCeEecEEEEEEeCC---CCcEEEEEEe
Q 031204            3 NLMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGK-----Q-LKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTVYD   72 (164)
Q Consensus         3 ~~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~-----~-~~T~~~~~t~~P~w~e~~~f~~~~~---~~~l~i~v~d   72 (164)
                      ...|.|.|+|++|+||+..+ .+.+||||++++..     . ++|++++++.+|.|||+|.|.+...   ...|.|+|||
T Consensus        12 ~~~~~L~V~v~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~v~v~~   91 (137)
T d2cm5a1          12 TQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWD   91 (137)
T ss_dssp             TTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEE
T ss_pred             CCCCEEEEEEEEEECCCCCCCCCCcCeEEEEEEEcCCccceeecCEeEcCCCCCccceEEEEEeEHHHccccEEEEEeee
Confidence            35678999999999999888 78999999999842     2 8899999999999999999998643   3469999999


Q ss_pred             CCCCCCCceeEEEEEechhhhhh
Q 031204           73 KDTFSLDDKMGDAEFYITPFLEA   95 (164)
Q Consensus        73 ~~~~~~~~~lG~~~v~l~~l~~~   95 (164)
                      ++.++++++||++.+++.++..+
T Consensus        92 ~~~~~~~~~iG~~~i~l~~~~~~  114 (137)
T d2cm5a1          92 YDIGKSNDYIGGCQLGISAKGER  114 (137)
T ss_dssp             CCSSSCCEEEEEEEEETTCCHHH
T ss_pred             CCCCCCCCEEEEEEeCccccCcc
Confidence            99999999999999999876543

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=2.8e-19  Score=119.77  Aligned_cols=91  Identities=25%  Similarity=0.399  Sum_probs=77.1

Q ss_pred             ccEEEEEEEEEeEcCCCCC-CC-CCCcEEEEEEC---CE-EeeeeeeCCCCCeEecEEEEEEeCC----CCcEEEEEEeC
Q 031204            4 LMGLLRVHVLRGVNLAVRD-VV-SSDPYVVIKMG---KQ-LKTRVVKNNVNPEWNEDLTLSISDS----NLPIKLTVYDK   73 (164)
Q Consensus         4 ~~g~L~v~v~~a~~L~~~~-~~-~~dpyv~v~~~---~~-~~T~~~~~t~~P~w~e~~~f~~~~~----~~~l~i~v~d~   73 (164)
                      ..+.|.|+|++|+||+.++ .+ .+||||++.+.   .+ ++|++++++.||.|||+|.|.....    ...|.|+|||+
T Consensus        20 ~~~~L~V~V~~a~~L~~~d~~~~~~dpyV~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~L~~~V~d~   99 (138)
T d1ugka_          20 ERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSF   99 (138)
T ss_dssp             GGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEEEE
T ss_pred             CCCEEEEEEEEecCCCCCCCCCCccceEEEEEEcCCCCEeEeCeeEeCCCCCceeeEEEEeeeCHHHcccceEEEEEEEC
Confidence            4568999999999999887 43 57999999994   33 8999999999999999999974322    24699999999


Q ss_pred             CCCCCCceeEEEEEechhhhh
Q 031204           74 DTFSLDDKMGDAEFYITPFLE   94 (164)
Q Consensus        74 ~~~~~~~~lG~~~v~l~~l~~   94 (164)
                      +.++++++||++.++|.++..
T Consensus       100 d~~~~~~~iG~~~i~L~~~~~  120 (138)
T d1ugka_         100 DRFSRDDIIGEVLIPLSGIEL  120 (138)
T ss_dssp             CSSCCCCCCEEEEEECTTCCC
T ss_pred             CCCCCCcEEEEEEEEcccccC
Confidence            999899999999999988743

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=1.3e-19  Score=119.48  Aligned_cols=93  Identities=22%  Similarity=0.358  Sum_probs=74.1

Q ss_pred             cccEEEEEEEEEeEcCCCCC-CCCCCcEEEEEECC-----E-EeeeeeeCCCCCeEecEEEEEE-eCC---CCcEEEEEE
Q 031204            3 NLMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGK-----Q-LKTRVVKNNVNPEWNEDLTLSI-SDS---NLPIKLTVY   71 (164)
Q Consensus         3 ~~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~-----~-~~T~~~~~t~~P~w~e~~~f~~-~~~---~~~l~i~v~   71 (164)
                      ...+.|.|+|++|+||++.+ .+.+||||++.+.+     . ++|++++++.+|.|||+|.|.. ...   ...|.|+||
T Consensus        11 ~~~~~L~V~V~~a~~L~~~~~~~~~dpyVkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~f~~~~~~~l~~~~L~i~v~   90 (125)
T d2bwqa1          11 KVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLW   90 (125)
T ss_dssp             TTTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEEE
T ss_pred             CCCCEEEEEEEEeECCCCcCCCCCCCEEEEEEEeCCCCCccccccCEEcCCCCCEEccEEEEeeeChhhcCCCEEEEEEE
Confidence            34678999999999999888 78999999999832     2 8999999999999999999974 322   346999999


Q ss_pred             eCCCCC--CCceeEEEEEechhhhhh
Q 031204           72 DKDTFS--LDDKMGDAEFYITPFLEA   95 (164)
Q Consensus        72 d~~~~~--~~~~lG~~~v~l~~l~~~   95 (164)
                      |.+.++  ++++||++.++++++...
T Consensus        91 d~~~~~~~~~~~iG~~~i~l~~~~~~  116 (125)
T d2bwqa1          91 DQARVREEESEFLGEILIELETALLD  116 (125)
T ss_dssp             EC-------CEEEEEEEEEGGGCCCS
T ss_pred             ECCCCCCCCCeeEEEEEEEchhcCCC
Confidence            998763  456999999999887653

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.79  E-value=1.6e-19  Score=123.49  Aligned_cols=91  Identities=30%  Similarity=0.385  Sum_probs=79.3

Q ss_pred             ccEEEEEEEEEeEcCCCCC-CCCCCcEEEEEECC--E----EeeeeeeCCCCCeEecEEEEEEeCC---CCcEEEEEEeC
Q 031204            4 LMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGK--Q----LKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTVYDK   73 (164)
Q Consensus         4 ~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~--~----~~T~~~~~t~~P~w~e~~~f~~~~~---~~~l~i~v~d~   73 (164)
                      ..++|.|+|++|+||+..+ .+.+||||++++..  .    ++|++.+++.||.|||+|.|.+...   ...|.|+|||+
T Consensus        23 ~~~~L~V~V~~a~~L~~~~~~~~~dpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~F~v~~~~l~~~~l~i~v~d~  102 (157)
T d1uowa_          23 TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDY  102 (157)
T ss_dssp             TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEEC
T ss_pred             CCCEEEEEEEEEEEcccccCCCCCCeeEEEEEecCCccccceecccccCCCCcccCCeEEEEecHHHcCccEEEEEEccc
Confidence            4578999999999999888 78999999999853  2    7899999999999999999998654   34699999999


Q ss_pred             CCCCCCceeEEEEEechhhhh
Q 031204           74 DTFSLDDKMGDAEFYITPFLE   94 (164)
Q Consensus        74 ~~~~~~~~lG~~~v~l~~l~~   94 (164)
                      +.++++++||++.|++.....
T Consensus       103 ~~~~~~~~iG~~~i~l~~~~~  123 (157)
T d1uowa_         103 DKIGKNDAIGKVFVGYNSTGA  123 (157)
T ss_dssp             CSSSCCCEEEEEEEETTCCHH
T ss_pred             CCCCCCceeEEEEEecccCCh
Confidence            999999999999999976543

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=2.2e-19  Score=120.29  Aligned_cols=90  Identities=21%  Similarity=0.244  Sum_probs=77.6

Q ss_pred             ccEEEEEEEEEeEcCCCCCCCCCCcEEEEEECC--E---EeeeeeeCCCCCeEecEEEEEEeCC---CCcEEEEEEeCCC
Q 031204            4 LMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGK--Q---LKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTVYDKDT   75 (164)
Q Consensus         4 ~~g~L~v~v~~a~~L~~~~~~~~dpyv~v~~~~--~---~~T~~~~~t~~P~w~e~~~f~~~~~---~~~l~i~v~d~~~   75 (164)
                      ..+.|.|+|++|++|+.  .+.+||||++.+.+  .   ++|++++++.+|.|||+|.|.+...   ...|.|+|||++.
T Consensus        24 ~~~~L~V~v~~a~~L~~--~g~~dpyVkv~l~~~~~~~~~kT~v~~~~~~P~wne~f~f~v~~~~l~~~~L~~~V~d~~~  101 (138)
T d1wfma_          24 QKAELFVTRLEAVTSNH--DGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDR  101 (138)
T ss_dssp             TTTEEEEEEEEEECCCC--SSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEECCS
T ss_pred             CCCEEEEEEEEcCCCCC--CCCcCcEEEEEECCCCCccceeeeEECCCCCceEeeeEEEEeeehhccceEEEEEEeeecc
Confidence            45789999999999964  35789999999953  2   8899999999999999999998643   3569999999999


Q ss_pred             CCCCceeEEEEEechhhhhh
Q 031204           76 FSLDDKMGDAEFYITPFLEA   95 (164)
Q Consensus        76 ~~~~~~lG~~~v~l~~l~~~   95 (164)
                      ++++++||++.|+|.++...
T Consensus       102 ~~~~~~iG~~~i~L~~l~~~  121 (138)
T d1wfma_         102 FSRHSVAGELRLGLDGTSVP  121 (138)
T ss_dssp             SCTTSCSEEEEEESSSSSSC
T ss_pred             cccceeeeEEEEEhHHccCC
Confidence            98999999999999987544

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.77  E-value=1.1e-18  Score=116.81  Aligned_cols=91  Identities=27%  Similarity=0.297  Sum_probs=74.0

Q ss_pred             ccEEEEEEEEEeEcCCCCC-CCCCCcEEEEEEC--CE----EeeeeeeCCCCCeEecEEEEEEeCC---CCcEEEEEEeC
Q 031204            4 LMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMG--KQ----LKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTVYDK   73 (164)
Q Consensus         4 ~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~--~~----~~T~~~~~t~~P~w~e~~~f~~~~~---~~~l~i~v~d~   73 (164)
                      ..+.|.|+|++|+||++++ .+.+||||++++.  +.    .+|++++++.||.|||+|.|.+...   ...|.|+|||+
T Consensus        13 ~~~~L~V~v~~a~~L~~~~~~~~~dpyvkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~i~v~d~   92 (138)
T d1w15a_          13 TTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDS   92 (138)
T ss_dssp             TTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEEEEC
T ss_pred             CCCEEEEEEEEeECCCCCCCCCCcCEEEEEEEeCCcccCccccceeECCCCCCeECcEEEEEecHHHhCccEEEEEEEeC
Confidence            4578999999999999988 7889999999983  22    6899999999999999999998543   23599999999


Q ss_pred             CCCCCCceeEEEEEechhhhh
Q 031204           74 DTFSLDDKMGDAEFYITPFLE   94 (164)
Q Consensus        74 ~~~~~~~~lG~~~v~l~~l~~   94 (164)
                      +.++++++||++.+++.....
T Consensus        93 ~~~~~~~~iG~~~i~l~~~~~  113 (138)
T d1w15a_          93 ERGSRNEVIGRLVLGATAEGS  113 (138)
T ss_dssp             CTTSCCEEEEEEEESTTCCSH
T ss_pred             CCCCCCCEEEEEEEcchhCCc
Confidence            999899999999999876543

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.72  E-value=1.2e-18  Score=117.50  Aligned_cols=91  Identities=29%  Similarity=0.419  Sum_probs=79.4

Q ss_pred             ccEEEEEEEEEeEcCCCCC-CCCCCcEEEEEECCE------EeeeeeeCCCCCeEecEEEEEEeCC---CCcEEEEEEeC
Q 031204            4 LMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQ------LKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTVYDK   73 (164)
Q Consensus         4 ~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~~------~~T~~~~~t~~P~w~e~~~f~~~~~---~~~l~i~v~d~   73 (164)
                      ..|.|.|+|++|+||+..+ .+.+||||++++.+.      ++|++++++.||.|||+|.|.+...   ...|.|.|||+
T Consensus        18 ~~~~L~V~V~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~v~v~d~   97 (145)
T d1dqva2          18 TAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDY   97 (145)
T ss_dssp             TTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCEEEEC
T ss_pred             CCCEEEEEEEEEeCCCCcCCCCCcCceEEEEEccCCccceeecCEEEeCCCCceecceEEEEEehhhcCCCEEEEEEEec
Confidence            4589999999999999887 778999999998642      7899999999999999999987532   35699999999


Q ss_pred             CCCCCCceeEEEEEechhhhh
Q 031204           74 DTFSLDDKMGDAEFYITPFLE   94 (164)
Q Consensus        74 ~~~~~~~~lG~~~v~l~~l~~   94 (164)
                      +.++++++||++.|+++.+..
T Consensus        98 ~~~~~~~~iG~~~i~l~~~~~  118 (145)
T d1dqva2          98 DCIGHNEVIGVCRVGPEAADP  118 (145)
T ss_dssp             CSSSCCEEEEECCCSSCTTCH
T ss_pred             CCCCCCcEEEEEEECchHcCc
Confidence            999999999999999987644

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=3.7e-15  Score=97.37  Aligned_cols=82  Identities=22%  Similarity=0.440  Sum_probs=63.2

Q ss_pred             EEEEEEEEeEcCCCCCCCCCCcEEEEEECC------E-Eeeee--eeCCCCCeEecE-EEE-EEeCCC-CcEEEEEEeCC
Q 031204            7 LLRVHVLRGVNLAVRDVVSSDPYVVIKMGK------Q-LKTRV--VKNNVNPEWNED-LTL-SISDSN-LPIKLTVYDKD   74 (164)
Q Consensus         7 ~L~v~v~~a~~L~~~~~~~~dpyv~v~~~~------~-~~T~~--~~~t~~P~w~e~-~~f-~~~~~~-~~l~i~v~d~~   74 (164)
                      +|+|+|++|++|+.+   +.||||++++-+      . .+|++  ..++.||.|||+ |.| .+..++ ..|.|.|||++
T Consensus         2 tl~V~Visaq~L~~~---~~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~~~~~~~l~~L~f~V~D~d   78 (122)
T d2zkmx2           2 TLSITVISGQFLSER---SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVMEEG   78 (122)
T ss_dssp             EEEEEEEEEESCCSS---CCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEEEETT
T ss_pred             EEEEEEEEeeCCCCC---CCCcEEEEEEECcCCCCCccEEEEEEEeCCeecceEcccEeEEEecCCCcccEEEEEEECCC
Confidence            689999999999865   589999999832      2 44544  356899999976 444 344444 35999999975


Q ss_pred             CCCCCceeEEEEEechhhhhh
Q 031204           75 TFSLDDKMGDAEFYITPFLEA   95 (164)
Q Consensus        75 ~~~~~~~lG~~~v~l~~l~~~   95 (164)
                          +++||++.++++.+..+
T Consensus        79 ----~~~lG~~~ipl~~l~~G   95 (122)
T d2zkmx2          79 ----NKFLGHRIIPINALNSG   95 (122)
T ss_dssp             ----TEEEEEEEEEGGGBCCE
T ss_pred             ----CCEEEEEEEEcccCcCC
Confidence                78999999999888665

>d2yrba1 b.7.1.1 (A:596-737) Fantom {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Fantom
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.80  E-value=0.066  Score=34.02  Aligned_cols=92  Identities=15%  Similarity=0.128  Sum_probs=62.1

Q ss_pred             CcccEEEEEEEEEeEcCCCC----CCCCCCcEEEEEECCE--EeeeeeeCCCCCeEecEEEEEEeCC--------CCcEE
Q 031204            2 ENLMGLLRVHVLRGVNLAVR----DVVSSDPYVVIKMGKQ--LKTRVVKNNVNPEWNEDLTLSISDS--------NLPIK   67 (164)
Q Consensus         2 ~~~~g~L~v~v~~a~~L~~~----~~~~~dpyv~v~~~~~--~~T~~~~~t~~P~w~e~~~f~~~~~--------~~~l~   67 (164)
                      +...+.+.+.|..+.--+..    +...+..||.+.+-..  +.|.++ .+.+|.+|-+..|.+...        ...+.
T Consensus         6 ~~gEnlfEihi~~~~~s~e~l~~~~d~~p~tF~T~~Fyd~Etq~TPv~-~g~~p~ynfts~Y~V~~d~~fl~YL~~~~~~   84 (142)
T d2yrba1           6 ERGENLFEIHINKVTFSSEVLQASGDKEPVTFCTYAFYDFELQTTPVV-RGLHPEYNFTSQYLVHVNDLFLQYIQKNTIT   84 (142)
T ss_dssp             CSSCEEEEEEEEEECCCHHHHHHHCSSCCEEEEEECSTTCCCEECCCE-ESSSCCCCEEEEEEECCSHHHHHHHHHCCEE
T ss_pred             cCCCcEEEEEEeeEEEcHHHHhhccCCCCcEEEEEEEEeeeeecCcee-cCCCCcceeEEEEEEccCHHHHHHHhhCCEE
Confidence            44567788888776321111    1223445777776665  555554 566899999999888643        25699


Q ss_pred             EEEEeCCCCCCCceeEEEEEechhhhhh
Q 031204           68 LTVYDKDTFSLDDKMGDAEFYITPFLEA   95 (164)
Q Consensus        68 i~v~d~~~~~~~~~lG~~~v~l~~l~~~   95 (164)
                      +++|..... ....++.+.+.+.++...
T Consensus        85 lelhqa~g~-~~~tvA~g~i~l~~lLd~  111 (142)
T d2yrba1          85 LEVHQAYST-EYETIAACQLKFHEILEK  111 (142)
T ss_dssp             EEEEEECSS-CEEEEEEEEECCSHHHHC
T ss_pred             EEEEeecCC-CcceeEEEEEEhhHhhCc
Confidence            999987643 445899999999998864