Citrus Sinensis ID: 031206

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160----
Protein Sequence
MVVRIRLARFGCKNKPFYRVMAADSRSPRDGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLLPPPPMVAMGRKGGPRDTRPVDPMTGRVLEKPTNAKQIKADDICSHMNGLDLAFVFMHCTSSSILKLQHMPVQGSNEIHICQIKSKEYIQMVSGHF
Secondary Structure (PSIPRED)
ccEEEEccccccccccEEEEEEEcccccccccccccEEEEcHHHHHHHHHccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccEEEEEcccccccccccccccccccEEEEEEccHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccEEEEEHHcccccccEEEEEEEcccccccccEEEEEEEccHHHHHHHHHccccccHHHHHHHHHcccccccHHHHHHccccccccccccccccccccccccHHHccHHHHHHHHccccHHHHHHHcccHHHHHHcccccccccEEEEEEEccHHEHHEHcccc
Coil and Loop (DISEMBL)
MVVRIRlarfgcknkpfyrvmaadsrsprdgqdsgkrmglnfDRVKYWLsvgaqpsdpvQRILFragllppppmvamgrkggprdtrpvdpmtgrvlekptnakqikaddicshmnGLDLAFVFMHCtsssilklqhmpvqgsneihicqikSKEYIQMVSGHF
Flexible Loop (DISEMBL)
mvvrirlarfgcknkpfyrvmaadsrsprdgqdsgkRMGLNFDRVKYWLSVGAQPSDPVQRILFRAgllppppmvamgrkggprdtrpvdpmtgrvlekptnakqikadDICSHMNGLDLAFVFMHCTSSSILKLQHMPVQGSNEIHICQIKSKEYIQMVSGHF
Low Complexity Region (SEG)
MVVRIRLARFGCKNKPFYRVMAADSRSPRDGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLLPPPPMVAMGRKGGPRDTRPVDPMTGRVLEKPTNAKQIKADDICSHMNGLDLAFVFMHCTSSSILKLQHMPVQGSNEIHICQIKSKEYIQMVSGHF
Disordered region (IsUnstruct)
**VRIRLARFGCKNKPFYRVM*****************GLNFDRVKYWLSVGAQPSDPVQRILFRAGLL************************************IKADDICSHMNGLDLAFVFMHCTSSSILKLQHMPVQGSNEIHICQIKSKEYIQ******
Disordered Region (DISOPRED)
MVVRIRLARFGCKNKPFYRVMAADSRSPRDGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLLP****************************************************VFMHCTSSSILKLQHMPVQGSNEIHICQIKSKEYIQMVSGH*
Disordered Region (DISEMBL)
MVVRIRLARFGCKNKPFYRVMAA***********GKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLLPPPPMVAMGRKGGPRDTRPVDPMTGRVLEKPTNAKQIKADDICSHMNGLDLAFVFMHCTSSSILKLQHMPVQGSNEIHICQIKSKEYIQMVSGHF
Disordered Region (DISPRO)
*VVRIRLARFGCKNKPFYRVMAADSRSPRDGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLLPPP**********************R*********QIKADDICSHMNGLDLAFVFMHCTSSSILKLQHMPVQGSNEIHICQIKSKEYIQMVSG**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVVRIRLARFGCKNKPFYRVMAADSRSPRDGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLLPPPPMVAMGRKGGPRDTRPVDPMTGRVLEKPTNAKQIKADDICSHMNGLDLAFVFMHCTSSSILKLQHMPVQGSNEIHICQIKSKEYIQMVSGHF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	164	2.2.26 [Sep-21-2011]
A5V9P7	154	30S ribosomal protein S16	yes	no	0.414	0.441	0.5	2e-14
Q16AN8	122	30S ribosomal protein S16	yes	no	0.414	0.557	0.487	2e-14
Q5NNL0	143	30S ribosomal protein S16	yes	no	0.420	0.482	0.481	3e-14
A8LMC0	130	30S ribosomal protein S16	yes	no	0.426	0.538	0.464	5e-14
Q5LNF2	121	30S ribosomal protein S16	yes	no	0.420	0.570	0.469	6e-14
Q1RGQ5	111	30S ribosomal protein S16	yes	no	0.432	0.639	0.447	8e-14
A8GY79	111	30S ribosomal protein S16	yes	no	0.432	0.639	0.447	8e-14
Q2VZV8	123	30S ribosomal protein S16	yes	no	0.439	0.585	0.441	8e-14
Q2RV59	124	30S ribosomal protein S16	yes	no	0.414	0.548	0.512	1e-13
Q92L43	124	30S ribosomal protein S16	yes	no	0.439	0.580	0.441	1e-13

>sp|A5V9P7|RS16_SPHWW 30S ribosomal protein S16 OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=rpsP PE=3 SV=1

 Score = 78.6 bits (192), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 41/82 (50%), Positives = 52/82 (63%), Gaps = 14/82 (17%)

Query: 1  MVVRIRLARFGCKNKPFYRVMAADSRSPRDG--------------QDSGKRMGLNFDRVK 46
          M V IRLAR G K +P+YR++ AD+RSPRDG              +D  KR+ L+ DR K
Sbjct: 1  MAVSIRLARGGAKKRPYYRIVVADARSPRDGAFIEKIGAYNPLLAKDDPKRVVLDTDRAK 60

Query: 47 YWLSVGAQPSDPVQRILFRAGL 68
          +WLSVGAQP+D V R L  AG+
Sbjct: 61 HWLSVGAQPTDRVARFLDAAGV 82

Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) (taxid: 392499)

>sp|Q16AN8|RS16_ROSDO 30S ribosomal protein S16 OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=rpsP PE=3 SV=1

 Score = 78.6 bits (192), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 40/82 (48%), Positives = 54/82 (65%), Gaps = 14/82 (17%)

Query: 1  MVVRIRLARFGCKNKPFYRVMAADSRSPRDG--------------QDSGKRMGLNFDRVK 46
          M ++IRLAR G K +PFYR++AADSR PRDG              +DS +R+ ++ +RV+
Sbjct: 1  MAMKIRLARGGSKKRPFYRIVAADSRMPRDGRFIEKLGTYNPLLPKDSEERVKMDAERVQ 60

Query: 47 YWLSVGAQPSDPVQRILFRAGL 68
          YWL  GAQP+D V R+L  AGL
Sbjct: 61 YWLGQGAQPTDRVARMLEAAGL 82

Roseobacter denitrificans (strain ATCC 33942 / OCh 114) (taxid: 375451)

>sp|Q5NNL0|RS16_ZYMMO 30S ribosomal protein S16 OS=Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4) GN=rpsP PE=3 SV=1

 Score = 77.8 bits (190), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 40/83 (48%), Positives = 53/83 (63%), Gaps = 14/83 (16%)

Query: 1  MVVRIRLARFGCKNKPFYRVMAADSRSPRDG--------------QDSGKRMGLNFDRVK 46
          M V IRL+R G K +PFYR++ A+SRSPRDG              +D+  R+ ++ DR +
Sbjct: 1  MAVSIRLSRGGAKRRPFYRIVIANSRSPRDGSFIEKIGSYNPQLPKDNENRVIVDLDRAR 60

Query: 47 YWLSVGAQPSDPVQRILFRAGLL 69
          +WLSVGAQP+D V R L  AGLL
Sbjct: 61 HWLSVGAQPTDRVARFLDAAGLL 83

Zymomonas mobilis (strain ATCC 31821 / ZM4 / CP4) (taxid: 264203)

>sp|A8LMC0|RS16_DINSH 30S ribosomal protein S16 OS=Dinoroseobacter shibae (strain DFL 12) GN=rpsP PE=3 SV=1

 Score = 77.0 bits (188), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 39/84 (46%), Positives = 54/84 (64%), Gaps = 14/84 (16%)

Query: 1  MVVRIRLARFGCKNKPFYRVMAADSRSPRDG--------------QDSGKRMGLNFDRVK 46
          M ++IRLAR G K +PFYR++AADSR PRDG              +DS  R+ ++ +RV+
Sbjct: 1  MAMKIRLARGGSKKRPFYRIVAADSRMPRDGRFIEKLGTYNPLLPKDSEDRVKMDLERVQ 60

Query: 47 YWLSVGAQPSDPVQRILFRAGLLP 70
          YWL  GA+P+D V R+L  A +LP
Sbjct: 61 YWLGEGAKPTDRVARMLEAAEVLP 84

Dinoroseobacter shibae (strain DFL 12) (taxid: 398580)

>sp|Q5LNF2|RS16_RUEPO 30S ribosomal protein S16 OS=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) GN=rpsP PE=3 SV=1

 Score = 76.6 bits (187), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 39/83 (46%), Positives = 55/83 (66%), Gaps = 14/83 (16%)

Query: 1  MVVRIRLARFGCKNKPFYRVMAADSRSPRDG--------------QDSGKRMGLNFDRVK 46
          M ++IRLAR G K +PFYR++AADSR PRDG              +DS +R+ ++ +RV+
Sbjct: 1  MAMKIRLARGGSKKRPFYRIVAADSRMPRDGRFIEKLGTYNPLLPKDSEERVKMDVERVQ 60

Query: 47 YWLSVGAQPSDPVQRILFRAGLL 69
          YWLS GAQ +D V R+L  AG++
Sbjct: 61 YWLSQGAQTTDRVARMLEAAGVV 83

Silicibacter pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) (taxid: 246200)

>sp|Q1RGQ5|RS16_RICBR 30S ribosomal protein S16 OS=Rickettsia bellii (strain RML369-C) GN=rpsP PE=3 SV=1

 Score = 76.3 bits (186), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 38/85 (44%), Positives = 53/85 (62%), Gaps = 14/85 (16%)

Query: 1  MVVRIRLARFGCKNKPFYRVMAADSRSPRDG--------------QDSGKRMGLNFDRVK 46
          M V+IRLAR G K +PFYRV+ A++ +PRDG              +DS +R+ L  DRV+
Sbjct: 1  MAVKIRLARGGAKKRPFYRVVVANATAPRDGDFLEKVGTYNPMLAKDSNERVVLKADRVE 60

Query: 47 YWLSVGAQPSDPVQRILFRAGLLPP 71
          YWL  GA+P+D V R + +AG+  P
Sbjct: 61 YWLKSGAKPTDRVARFIEQAGIALP 85

Rickettsia bellii (strain RML369-C) (taxid: 336407)

>sp|A8GY79|RS16_RICB8 30S ribosomal protein S16 OS=Rickettsia bellii (strain OSU 85-389) GN=rpsP PE=3 SV=1

 Score = 76.3 bits (186), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 38/85 (44%), Positives = 53/85 (62%), Gaps = 14/85 (16%)

Query: 1  MVVRIRLARFGCKNKPFYRVMAADSRSPRDG--------------QDSGKRMGLNFDRVK 46
          M V+IRLAR G K +PFYRV+ A++ +PRDG              +DS +R+ L  DRV+
Sbjct: 1  MAVKIRLARGGAKKRPFYRVVVANATAPRDGDFLEKVGTYNPMLAKDSNERVVLKADRVE 60

Query: 47 YWLSVGAQPSDPVQRILFRAGLLPP 71
          YWL  GA+P+D V R + +AG+  P
Sbjct: 61 YWLKSGAKPTDRVARFIEQAGIALP 85

Rickettsia bellii (strain OSU 85-389) (taxid: 391896)

>sp|Q2VZV8|RS16_MAGSA 30S ribosomal protein S16 OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=rpsP PE=3 SV=1

 Score = 76.3 bits (186), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 38/86 (44%), Positives = 55/86 (63%), Gaps = 14/86 (16%)

Query: 1  MVVRIRLARFGCKNKPFYRVMAADSRSPRDGQ--------------DSGKRMGLNFDRVK 46
          M ++IRL+R G K +PFY+++ AD+R+PRDG+              D+G+R  L+ DRVK
Sbjct: 1  MALKIRLSRGGAKKRPFYKIVVADARAPRDGRFIEKVGTYNPMLPNDNGQRWILDEDRVK 60

Query: 47 YWLSVGAQPSDPVQRILFRAGLLPPP 72
          +WLSVGAQP+D + R     GL+  P
Sbjct: 61 HWLSVGAQPTDRLVRFFADKGLVAKP 86

Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) (taxid: 342108)

>sp|Q2RV59|RS16_RHORT 30S ribosomal protein S16 OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=rpsP PE=3 SV=1

 Score = 75.9 bits (185), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/82 (51%), Positives = 51/82 (62%), Gaps = 14/82 (17%)

Query: 1  MVVRIRLARFGCKNKPFYRVMAADSRSPRDG--------------QDSGKRMGLNFDRVK 46
          M +RIRLAR G K +PFYR++ ADSRSPRDG              +D  +R+ L  +RVK
Sbjct: 1  MSLRIRLARGGAKKRPFYRIVVADSRSPRDGRFIEKLGTFDPMLPRDHERRVVLKDERVK 60

Query: 47 YWLSVGAQPSDPVQRILFRAGL 68
          YWL VGA PSD V R L  +GL
Sbjct: 61 YWLGVGALPSDRVARFLGLSGL 82

Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) (taxid: 269796)

>sp|Q92L43|RS16_RHIME 30S ribosomal protein S16 OS=Rhizobium meliloti (strain 1021) GN=rpsP PE=3 SV=1

 Score = 75.9 bits (185), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 38/86 (44%), Positives = 55/86 (63%), Gaps = 14/86 (16%)

Query: 1  MVVRIRLARFGCKNKPFYRVMAADSRSPRDG--------------QDSGKRMGLNFDRVK 46
          M ++IRLAR G K +P+Y+++ AD+RSPRDG              +D  KR+ LN +RV+
Sbjct: 1  MALKIRLARGGSKKRPYYQIVVADARSPRDGRFLEKLGSWNPMLAKDDEKRIELNAERVQ 60

Query: 47 YWLSVGAQPSDPVQRILFRAGLLPPP 72
          +W++ GAQP+D V R L +AGL   P
Sbjct: 61 HWIAQGAQPTDRVMRFLDQAGLAKRP 86

Rhizobium meliloti (strain 1021) (taxid: 266834)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	164
225444887	136	PREDICTED: 30S ribosomal protein S16 [Vi	0.670	0.808	0.761	2e-45
449530225	127	PREDICTED: 30S ribosomal protein S16-lik	0.664	0.858	0.746	7e-45
351727417	132	uncharacterized protein LOC100499851 [Gl	0.652	0.810	0.747	5e-44
351721257	132	uncharacterized protein LOC100305630 [Gl	0.640	0.795	0.760	9e-44
190609947	136	30S ribosomal protein S16 [Populus alba]	0.591	0.713	0.801	3e-43
224118446	136	predicted protein [Populus trichocarpa]	0.591	0.713	0.792	7e-43
15241991	135	ribosomal protein S16 family protein [Ar	0.658	0.8	0.717	7e-43
21554119	135	30S ribosomal protein S16 [Arabidopsis t	0.658	0.8	0.717	9e-43
297790240	135	ribosomal protein S16 family protein [Ar	0.658	0.8	0.717	1e-42
388505698	131	unknown [Lotus japonicus]	0.628	0.786	0.743	1e-42

>gi|225444887|ref|XP_002281553.1| PREDICTED: 30S ribosomal protein S16 [Vitis vinifera] gi|297738652|emb|CBI27897.3| unnamed protein product [Vitis vinifera]

 Score =  187 bits (474), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 96/126 (76%), Positives = 104/126 (82%), Gaps = 16/126 (12%)

Query: 1   MVVRIRLARFGCKNKPFYRVMAADSRSPRDG--------------QDSGKRMGLNFDRVK 46
           MVVRIRL+RFGCKN+PFYRVMAADSRSPRDG              QD GKRMGLNFDRVK
Sbjct: 1   MVVRIRLSRFGCKNRPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFDRVK 60

Query: 47  YWLSVGAQPSDPVQRILFRAGLLPPPPMVAMGRKGGPRDTRPVDPMTGRVL--EKPTNAK 104
           YWLSVGAQPSDPVQ+ILFRAGLLPPPPMVAMGRKGG RDTRPVDP+TGR+L   KPT+ +
Sbjct: 61  YWLSVGAQPSDPVQQILFRAGLLPPPPMVAMGRKGGHRDTRPVDPLTGRILTPNKPTDVE 120

Query: 105 QIKADD 110
           Q K D+
Sbjct: 121 QPKDDE 126

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449530225|ref|XP_004172096.1| PREDICTED: 30S ribosomal protein S16-like [Cucumis sativus]

 Score =  185 bits (469), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 94/126 (74%), Positives = 103/126 (81%), Gaps = 17/126 (13%)

Query: 1   MVVRIRLARFGCKNKPFYRVMAADSRSPRDG--------------QDSGKRMGLNFDRVK 46
           MVVRIRL+RFGCKNKPFYRVMAADSRSPRDG              QD GKRMGLNF+RVK
Sbjct: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGLNFERVK 60

Query: 47  YWLSVGAQPSDPVQRILFRAGLLPPPPMVAMGRKGGPRDTRPVDPMTGRVL---EKPTNA 103
           YWLSVGAQPSDPVQRILFR+GLLPPPPMVAMGRKGGPRDTRPVDP++GR +   +KPT+ 
Sbjct: 61  YWLSVGAQPSDPVQRILFRSGLLPPPPMVAMGRKGGPRDTRPVDPLSGRFVTPAKKPTDG 120

Query: 104 KQIKAD 109
              +AD
Sbjct: 121 SNGEAD 126

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351727417|ref|NP_001236904.1| uncharacterized protein LOC100499851 [Glycine max] gi|255627125|gb|ACU13907.1| unknown [Glycine max]

 Score =  182 bits (461), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 92/123 (74%), Positives = 100/123 (81%), Gaps = 16/123 (13%)

Query: 1   MVVRIRLARFGCKNKPFYRVMAADSRSPRDG--------------QDSGKRMGLNFDRVK 46
           MVVRIRL+R GCKNKPFYRVMAADSRSPRDG              QD GKRMGLNFDRVK
Sbjct: 1   MVVRIRLSRLGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFDRVK 60

Query: 47  YWLSVGAQPSDPVQRILFRAGLLPPPPMVAMGRKGGPRDTRPVDPMTGRVL--EKPTNAK 104
           YWLSVGAQPS+PV+R+LFRAG+LPPPPMVAMGRKGGPRDTRPVD +TGRVL  EKP +A 
Sbjct: 61  YWLSVGAQPSEPVERLLFRAGMLPPPPMVAMGRKGGPRDTRPVDALTGRVLHQEKPADAN 120

Query: 105 QIK 107
             +
Sbjct: 121 NTE 123

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351721257|ref|NP_001238227.1| uncharacterized protein LOC100305630 [Glycine max] gi|255626139|gb|ACU13414.1| unknown [Glycine max]

 Score =  181 bits (459), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 92/121 (76%), Positives = 98/121 (80%), Gaps = 16/121 (13%)

Query: 1   MVVRIRLARFGCKNKPFYRVMAADSRSPRDG--------------QDSGKRMGLNFDRVK 46
           MVVRIRL+R GCKNKPFYRVMAADSRSPRDG              QD GKRMGLNFDRVK
Sbjct: 1   MVVRIRLSRLGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFDRVK 60

Query: 47  YWLSVGAQPSDPVQRILFRAGLLPPPPMVAMGRKGGPRDTRPVDPMTGRVL--EKPTNAK 104
           YWLSVGAQPS+PV+R+LFRAG+LPPPPMVAMGRKGGPRDTRPVD +TGRVL  EK  NA 
Sbjct: 61  YWLSVGAQPSEPVERLLFRAGMLPPPPMVAMGRKGGPRDTRPVDALTGRVLNQEKAANAN 120

Query: 105 Q 105
            
Sbjct: 121 N 121

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|190609947|dbj|BAG49074.1| 30S ribosomal protein S16 [Populus alba]

 Score =  179 bits (455), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 89/111 (80%), Positives = 93/111 (83%), Gaps = 14/111 (12%)

Query: 1   MVVRIRLARFGCKNKPFYRVMAADSRSPRDG--------------QDSGKRMGLNFDRVK 46
           MVVRIRL+RFGC NKPFYRVMAADSRSPRDG              QD GKRMGLNF+RVK
Sbjct: 1   MVVRIRLSRFGCSNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60

Query: 47  YWLSVGAQPSDPVQRILFRAGLLPPPPMVAMGRKGGPRDTRPVDPMTGRVL 97
           YWLSVGAQPS+PVQRILFRAGLLPPPPM+ MGRKGGPRDTRPVDPMTGR L
Sbjct: 61  YWLSVGAQPSEPVQRILFRAGLLPPPPMMVMGRKGGPRDTRPVDPMTGRFL 111

Source: Populus alba

Species: Populus alba

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224118446|ref|XP_002331484.1| predicted protein [Populus trichocarpa] gi|222873562|gb|EEF10693.1| predicted protein [Populus trichocarpa]

 Score =  178 bits (451), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 88/111 (79%), Positives = 93/111 (83%), Gaps = 14/111 (12%)

Query: 1   MVVRIRLARFGCKNKPFYRVMAADSRSPRDG--------------QDSGKRMGLNFDRVK 46
           MVVRIRL+RFGC NKPFYRVMAADSRSPRDG              QD GKRMGLNF+RVK
Sbjct: 1   MVVRIRLSRFGCSNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60

Query: 47  YWLSVGAQPSDPVQRILFRAGLLPPPPMVAMGRKGGPRDTRPVDPMTGRVL 97
           YWLSVGAQPS+PVQRILFRAG+LPPPPM+ MGRKGGPRDTRPVDPMTGR L
Sbjct: 61  YWLSVGAQPSEPVQRILFRAGVLPPPPMMVMGRKGGPRDTRPVDPMTGRFL 111

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15241991|ref|NP_200504.1| ribosomal protein S16 family protein [Arabidopsis thaliana] gi|8777434|dbj|BAA97024.1| 30S ribosomal protein S16 [Arabidopsis thaliana] gi|14334472|gb|AAK59434.1| putative 30S ribosomal protein S16 [Arabidopsis thaliana] gi|16323518|gb|AAL15253.1| putative 30S ribosomal protein S16 [Arabidopsis thaliana] gi|332009442|gb|AED96825.1| ribosomal protein S16 family protein [Arabidopsis thaliana]

 Score =  178 bits (451), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 89/124 (71%), Positives = 99/124 (79%), Gaps = 16/124 (12%)

Query: 1   MVVRIRLARFGCKNKPFYRVMAADSRSPRDG--------------QDSGKRMGLNFDRVK 46
           MVVRIRL+RFGCKN+PF+RVMAADSRSPRDG              QD GKRMGL FDR+K
Sbjct: 1   MVVRIRLSRFGCKNRPFFRVMAADSRSPRDGKHLEVLGYFNPLPGQDGGKRMGLKFDRIK 60

Query: 47  YWLSVGAQPSDPVQRILFRAGLLPPPPMVAMGRKGGPRDTRPVDPMTGRVLEKPTNAKQI 106
           YWLSVGAQPSDPVQR+LFR+GLLPPPPMVAMGRKGG RDTRPVDPMTGR ++     K +
Sbjct: 61  YWLSVGAQPSDPVQRLLFRSGLLPPPPMVAMGRKGGARDTRPVDPMTGRYVD--AENKTV 118

Query: 107 KADD 110
            A+D
Sbjct: 119 NAND 122

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21554119|gb|AAM63199.1| 30S ribosomal protein S16 [Arabidopsis thaliana]

 Score =  177 bits (450), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 89/124 (71%), Positives = 99/124 (79%), Gaps = 16/124 (12%)

Query: 1   MVVRIRLARFGCKNKPFYRVMAADSRSPRDG--------------QDSGKRMGLNFDRVK 46
           MVVRIRL+RFGCKN+PF+RVMAADSRSPRDG              QD GKRMGL FDR+K
Sbjct: 1   MVVRIRLSRFGCKNRPFFRVMAADSRSPRDGKHLEVLGYFNPLPGQDGGKRMGLKFDRIK 60

Query: 47  YWLSVGAQPSDPVQRILFRAGLLPPPPMVAMGRKGGPRDTRPVDPMTGRVLEKPTNAKQI 106
           YWLSVGAQPSDPVQR+LFR+GLLPPPPMVAMGRKGG RDTRPVDPMTGR ++     K +
Sbjct: 61  YWLSVGAQPSDPVQRLLFRSGLLPPPPMVAMGRKGGARDTRPVDPMTGRYVD--AENKTV 118

Query: 107 KADD 110
            A+D
Sbjct: 119 NAND 122

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297790240|ref|XP_002863022.1| ribosomal protein S16 family protein [Arabidopsis lyrata subsp. lyrata] gi|297793207|ref|XP_002864488.1| ribosomal protein S16 family protein [Arabidopsis lyrata subsp. lyrata] gi|297308822|gb|EFH39281.1| ribosomal protein S16 family protein [Arabidopsis lyrata subsp. lyrata] gi|297310323|gb|EFH40747.1| ribosomal protein S16 family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  177 bits (449), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 89/124 (71%), Positives = 98/124 (79%), Gaps = 16/124 (12%)

Query: 1   MVVRIRLARFGCKNKPFYRVMAADSRSPRDG--------------QDSGKRMGLNFDRVK 46
           MVVRIRL+RFGCKN+PF+RVMAADSRSPRDG              QD GKRMGL FDR+K
Sbjct: 1   MVVRIRLSRFGCKNRPFFRVMAADSRSPRDGKHLEVLGYFNPLPGQDGGKRMGLKFDRIK 60

Query: 47  YWLSVGAQPSDPVQRILFRAGLLPPPPMVAMGRKGGPRDTRPVDPMTGRVLEKPTNAKQI 106
           YWLSVGAQPSDPVQR+LFR+GLLPPPPMVAMGRKGG RDTRPVDPMTGR ++     K +
Sbjct: 61  YWLSVGAQPSDPVQRLLFRSGLLPPPPMVAMGRKGGARDTRPVDPMTGRYVD--AENKTV 118

Query: 107 KADD 110
            A D
Sbjct: 119 NASD 122

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388505698|gb|AFK40915.1| unknown [Lotus japonicus]

 Score =  177 bits (449), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 87/117 (74%), Positives = 96/117 (82%), Gaps = 14/117 (11%)

Query: 1   MVVRIRLARFGCKNKPFYRVMAADSRSPRDG--------------QDSGKRMGLNFDRVK 46
           MVVR+RL+RFGCKNKPFYRVMAADSRSPRDG              QD GKRMGLNFDRVK
Sbjct: 1   MVVRLRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPVQDGGKRMGLNFDRVK 60

Query: 47  YWLSVGAQPSDPVQRILFRAGLLPPPPMVAMGRKGGPRDTRPVDPMTGRVLEKPTNA 103
           YWLSVGAQPS+PV+R+LFRAGLLPPPP VAMGRKGGPRD RPVD +TGRV+++   A
Sbjct: 61  YWLSVGAQPSEPVERLLFRAGLLPPPPTVAMGRKGGPRDMRPVDGLTGRVIDQEKTA 117

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	164
TAIR|locus:2164585	135	AT5G56940 [Arabidopsis thalian	0.658	0.8	0.717	5.2e-42
TAIR|locus:2139624	113	SSR16 "small subunit ribosomal	0.591	0.858	0.535	1.8e-25
ASPGD|ASPL0000067200	105	AN7701 [Emericella nidulans (t	0.219	0.342	0.583	3.5e-15
SGD|S000005934	121	MRPS16 "Mitochondrial ribosoma	0.207	0.280	0.558	1.2e-14
POMBASE|SPBC354.06	96	mrps16 "mitochondrial ribosoma	0.274	0.468	0.5	1.3e-13
TIGR_CMR|SPO_3253	121	SPO_3253 "ribosomal protein S1	0.420	0.570	0.469	5.6e-13
UNIPROTKB|P66444	90	rpsP "30S ribosomal protein S1	0.420	0.766	0.5	2.4e-12
UNIPROTKB|F1SU70	135	LOC100739849 "Uncharacterized	0.432	0.525	0.411	6.4e-12
UNIPROTKB|P82915	135	MRPS16 "28S ribosomal protein	0.432	0.525	0.4	2.2e-11
RGD|1582995	135	Mrps16 "mitochondrial ribosoma	0.432	0.525	0.388	2.8e-11

TAIR|locus:2164585 AT5G56940 [Arabidopsis thaliana (taxid:3702)]

 Score = 445 (161.7 bits), Expect = 5.2e-42, P = 5.2e-42
 Identities = 89/124 (71%), Positives = 99/124 (79%)

Query:     1 MVVRIRLARFGCKNKPFYRVMAADSRSPRDG--------------QDSGKRMGLNFDRVK 46
             MVVRIRL+RFGCKN+PF+RVMAADSRSPRDG              QD GKRMGL FDR+K
Sbjct:     1 MVVRIRLSRFGCKNRPFFRVMAADSRSPRDGKHLEVLGYFNPLPGQDGGKRMGLKFDRIK 60

Query:    47 YWLSVGAQPSDPVQRILFRAGLLPPPPMVAMGRKGGPRDTRPVDPMTGRVLEKPTNAKQI 106
             YWLSVGAQPSDPVQR+LFR+GLLPPPPMVAMGRKGG RDTRPVDPMTGR ++     K +
Sbjct:    61 YWLSVGAQPSDPVQRLLFRSGLLPPPPMVAMGRKGGARDTRPVDPMTGRYVDAEN--KTV 118

Query:   107 KADD 110
              A+D
Sbjct:   119 NAND 122

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

GO:0009536 "plastid" evidence=IDA

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

GO:0051607 "defense response to virus" evidence=RCA

TAIR|locus:2139624 SSR16 "small subunit ribosomal protein 16" [Arabidopsis thaliana (taxid:3702)]

 Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
 Identities = 60/112 (53%), Positives = 77/112 (68%)

Query:     1 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGQD----------SGK----RMGLNFDRVK 46
             M V+IRLAR GCK++PFYRV+ AD +S RDG+            GK    R+ L FDR+K
Sbjct:     1 MTVKIRLARLGCKHRPFYRVVVADEKSRRDGKQIEVLGFYDPLQGKEDADRVSLKFDRIK 60

Query:    47 YWLSVGAQPSDPVQRILFRAGLLPPPPMVAMGRKGGPRDT-RPVDPMTGRVL 97
             YWLSVGAQP+D V+ +LFRAGL+PP PMV +G K G + T + V P+TG +L
Sbjct:    61 YWLSVGAQPTDTVESMLFRAGLIPPKPMVVVGSKNGQKSTSQHVSPITGEIL 112

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS;TAS

GO:0006412 "translation" evidence=IEA;ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP;RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA

GO:0016226 "iron-sulfur cluster assembly" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

GO:0051607 "defense response to virus" evidence=RCA

ASPGD|ASPL0000067200 AN7701 [Emericella nidulans (taxid:162425)]

 Score = 105 (42.0 bits), Expect = 3.5e-15, Sum P(2) = 3.5e-15
 Identities = 21/36 (58%), Positives = 25/36 (69%)

Query:    36 KRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLLPP 71
             K + L+  R KYWL VGAQPSD V R+L  AGL+ P
Sbjct:    62 KEISLDRSRAKYWLGVGAQPSDTVWRLLSLAGLVKP 97

GO:0006412 "translation" evidence=IEA

GO:0005763 "mitochondrial small ribosomal subunit" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

SGD|S000005934 MRPS16 "Mitochondrial ribosomal protein of the small subunit" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 106 (42.4 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
 Identities = 19/34 (55%), Positives = 27/34 (79%)

Query:    36 KRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 69
             K + L+FDR KYW+ VGAQPS+ V ++L +AG+L
Sbjct:    63 KDVKLDFDRTKYWIGVGAQPSETVTKLLRKAGIL 96

GO:0005840 "ribosome" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA;IDA

GO:0005622 "intracellular" evidence=IEA

GO:0032543 "mitochondrial translation" evidence=IC

GO:0003735 "structural constituent of ribosome" evidence=IEA;IPI

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0005763 "mitochondrial small ribosomal subunit" evidence=IPI

GO:0006412 "translation" evidence=IEA

POMBASE|SPBC354.06 mrps16 "mitochondrial ribosomal protein subunit S16 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 107 (42.7 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
 Identities = 24/48 (50%), Positives = 31/48 (64%)

Query:    30 DGQDSGKRMG---LNFDRVKYWLSVGAQPSDPVQRILFRAGLLPPPPM 74
             D QDS  R+    LN +R KYW+SVGAQPSD V+ +  +  LLP  P+
Sbjct:    48 DSQDSIPRIKDIQLNVERFKYWISVGAQPSDTVRSLAEKFQLLPKKPV 95

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0005763 "mitochondrial small ribosomal subunit" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0032543 "mitochondrial translation" evidence=NAS

TIGR_CMR|SPO_3253 SPO_3253 "ribosomal protein S16" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
 Identities = 39/83 (46%), Positives = 55/83 (66%)

Query:     1 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGQ--------------DSGKRMGLNFDRVK 46
             M ++IRLAR G K +PFYR++AADSR PRDG+              DS +R+ ++ +RV+
Sbjct:     1 MAMKIRLARGGSKKRPFYRIVAADSRMPRDGRFIEKLGTYNPLLPKDSEERVKMDVERVQ 60

Query:    47 YWLSVGAQPSDPVQRILFRAGLL 69
             YWLS GAQ +D V R+L  AG++
Sbjct:    61 YWLSQGAQTTDRVARMLEAAGVV 83

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0042255 "ribosome assembly" evidence=ISS

UNIPROTKB|P66444 rpsP "30S ribosomal protein S16" [Streptococcus pneumoniae TIGR4 (taxid:170187)]

 Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
 Identities = 40/80 (50%), Positives = 49/80 (61%)

Query:     1 MVVRIRLARFGCKNKPFYRVMAADSRSPRDG---QDSG--------KRMGLNFDRVKYWL 49
             M V+IRL R G K KPFYR+  ADSRSPRDG   +  G         ++ L  DRV  WL
Sbjct:     1 MAVKIRLTRMGSKKKPFYRINVADSRSPRDGRFIETVGTYNPLVAENQVTLKEDRVLAWL 60

Query:    50 SVGAQPSDPVQRILFRAGLL 69
             + GAQPSD V+ IL + G+L
Sbjct:    61 ANGAQPSDTVRNILSKEGVL 80

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|F1SU70 LOC100739849 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 161 (61.7 bits), Expect = 6.4e-12, P = 6.4e-12
 Identities = 35/85 (41%), Positives = 52/85 (61%)

Query:     5 IRLARFGCKNKPFYRVMAADSRSPRDGQ-------------DSGKRM-GLNFDRVKYWLS 50
             IRLA  GC N+PFYR++AA S+ PRDG+               G+++  LNFDR+++W+ 
Sbjct:    19 IRLALGGCTNRPFYRIVAAHSKCPRDGRFVEQLGSYDPLPNSHGEKLVALNFDRIRHWIG 78

Query:    51 VGAQPSDPVQRILFRAGLLPPPPMV 75
              GA  S PV+++L  +G  P  PM+
Sbjct:    79 CGAHLSKPVEKLLGLSGFYPLHPMM 103

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|P82915 MRPS16 "28S ribosomal protein S16, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
 Identities = 34/85 (40%), Positives = 51/85 (60%)

Query:     5 IRLARFGCKNKPFYRVMAADSRSPRDGQ-------------DSGKRM-GLNFDRVKYWLS 50
             IRLA  GC N+PFYR++AA ++ PRDG+               G+++  LN DR+++W+ 
Sbjct:    19 IRLALGGCTNRPFYRIVAAHNKCPRDGRFVEQLGSYDPMPNSHGEKLVALNLDRIRHWIG 78

Query:    51 VGAQPSDPVQRILFRAGLLPPPPMV 75
              GA  S PV+++L  +G  P  PMV
Sbjct:    79 CGAHLSKPVEKLLGLSGFFPLHPMV 103

GO:0005763 "mitochondrial small ribosomal subunit" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

RGD|1582995 Mrps16 "mitochondrial ribosomal protein S16" [Rattus norvegicus (taxid:10116)]

 Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
 Identities = 33/85 (38%), Positives = 52/85 (61%)

Query:     5 IRLARFGCKNKPFYRVMAADSRSPRDGQ-------------DSGKRM-GLNFDRVKYWLS 50
             IRLA  GC N+PFYR++AA ++ PRDG+               G+++  LN DR+++W+ 
Sbjct:    19 IRLALGGCTNRPFYRIVAAHNKCPRDGRFVEQLGSYDPLPNSHGEKLVALNLDRIRHWIG 78

Query:    51 VGAQPSDPVQRILFRAGLLPPPPMV 75
              GAQ S P++++L  +G  P  PM+
Sbjct:    79 CGAQLSKPMEKLLGLSGFFPLHPMM 103

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISO

GO:0005763 "mitochondrial small ribosomal subunit" evidence=IEA;ISO

GO:0006412 "translation" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00016542001	SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (136 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00015322001	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (167 aa)	•			•	•		•		0.988
	GSVIVG00033342001	SubName- Full=Chromosome chr19 scaffold_66, whole genome shotgun sequence; (203 aa)	•			•	•		•		0.986
	rps3	SubName- Full=Chromosome undetermined scaffold_3592, whole genome shotgun sequence; (207 aa)	•			•	•		•		0.985
	rps8	RecName- Full=30S ribosomal protein S8, chloroplastic;; One of the primary rRNA binding protein [...] (134 aa)	•			•	•		•		0.985
	GSVIVG00015971001	SubName- Full=Chromosome chr17 scaffold_12, whole genome shotgun sequence; (112 aa)	•			•			•		0.980
	GSVIVG00003076001	SubName- Full=Chromosome chr10 scaffold_138, whole genome shotgun sequence; (340 aa)	•			•	•		•		0.977
	GSVIVG00008391001	SubName- Full=Chromosome undetermined scaffold_1415, whole genome shotgun sequence; (151 aa)	•			•	•		•		0.970
	rps2	ribosomal protein S2 (180 aa)	•			•	•		•		0.967
	GSVIVG00021597001	SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (488 aa)	•			•			•		0.962
	GSVIVG00035173001	SubName- Full=Chromosome chr10 scaffold_76, whole genome shotgun sequence; (116 aa)	•			•	•		•		0.945

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	164
TIGR00002	78	TIGR00002, S16, ribosomal protein S16	2e-28
PRK00040	75	PRK00040, rpsP, 30S ribosomal protein S16; Reviewe	1e-26
COG0228	87	COG0228, RpsP, Ribosomal protein S16 [Translation,	2e-26
PRK14521	186	PRK14521, rpsP, 30S ribosomal protein S16; Provisi	7e-23
pfam00886	61	pfam00886, Ribosomal_S16, Ribosomal protein S16	6e-21
PRK14520	155	PRK14520, rpsP, 30S ribosomal protein S16; Provisi	2e-20
PRK14525	88	PRK14525, rpsP, 30S ribosomal protein S16; Provisi	8e-18
CHL00005	82	CHL00005, rps16, ribosomal protein S16	2e-13
PRK14524	94	PRK14524, rpsP, 30S ribosomal protein S16; Provisi	8e-13
PRK14523	137	PRK14523, rpsP, 30S ribosomal protein S16; Provisi	2e-08
PRK14522	116	PRK14522, rpsP, 30S ribosomal protein S16; Provisi	4e-06

>gnl|CDD|129114 TIGR00002, S16, ribosomal protein S16

 Score =   99 bits (250), Expect = 2e-28
 Identities = 37/78 (47%), Positives = 50/78 (64%), Gaps = 11/78 (14%)

Query: 3  VRIRLARFGCKNKPFYRVMAADSRSPRDGQD-----------SGKRMGLNFDRVKYWLSV 51
          V+IRL R G K +PFYR++ ADSRS RDG+               R+ LN +R+KYWLS 
Sbjct: 1  VKIRLKRGGRKKRPFYRIVVADSRSRRDGRYIEELGFYNPLTKESRVKLNVERIKYWLSK 60

Query: 52 GAQPSDPVQRILFRAGLL 69
          GAQP+D V+ +L +AG+ 
Sbjct: 61 GAQPTDTVRNLLKKAGVF 78

This model describes ribosomal S16 of bacteria and organelles [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 78

>gnl|CDD|234588 PRK00040, rpsP, 30S ribosomal protein S16; Reviewed

 Score = 95.2 bits (238), Expect = 1e-26
 Identities = 35/74 (47%), Positives = 48/74 (64%), Gaps = 13/74 (17%)

Query: 3  VRIRLARFGCKNKPFYRVMAADSRSPRDG-------------QDSGKRMGLNFDRVKYWL 49
          V+IRLAR G K +PFYR++ ADSRSPRDG             + + + + L+ +RV YWL
Sbjct: 2  VKIRLARGGAKKRPFYRIVVADSRSPRDGRFIERVGFYNPLAKPAEEEVKLDEERVLYWL 61

Query: 50 SVGAQPSDPVQRIL 63
            GAQP+D V+R+L
Sbjct: 62 GQGAQPTDTVRRLL 75

Length = 75

>gnl|CDD|223306 COG0228, RpsP, Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]

 Score = 95.4 bits (238), Expect = 2e-26
 Identities = 40/78 (51%), Positives = 53/78 (67%), Gaps = 12/78 (15%)

Query: 3  VRIRLARFGCKNKPFYRVMAADSRSPRDGQ------------DSGKRMGLNFDRVKYWLS 50
          V+IRLAR G K +PFYR++ ADSRSPRDG+               +R+ L+ +R+ YWLS
Sbjct: 2  VKIRLARGGSKKRPFYRIVVADSRSPRDGRFIERLGTYNPLLGKEERVKLDEERILYWLS 61

Query: 51 VGAQPSDPVQRILFRAGL 68
           GAQPSD V+R+L +AGL
Sbjct: 62 QGAQPSDTVRRLLKKAGL 79

Length = 87

>gnl|CDD|237744 PRK14521, rpsP, 30S ribosomal protein S16; Provisional

 Score = 89.1 bits (221), Expect = 7e-23
 Identities = 39/81 (48%), Positives = 48/81 (59%), Gaps = 13/81 (16%)

Query: 1  MVVRIRLARFGCKNKPFYRVMAADSRSPRDGQDSGKRMG------------LNFDRVKYW 48
          M V+IRL R G K K FY ++AADSR+PRDG+   K +G            LNFDR  YW
Sbjct: 1  MAVKIRLQRHGRKGKAFYWIVAADSRAPRDGKFIEK-IGTYNPNTNPATVDLNFDRAVYW 59

Query: 49 LSVGAQPSDPVQRILFRAGLL 69
          L  GAQP+D  + IL   G+L
Sbjct: 60 LMNGAQPTDTARNILSYEGVL 80

Length = 186

>gnl|CDD|216173 pfam00886, Ribosomal_S16, Ribosomal protein S16

 Score = 80.6 bits (200), Expect = 6e-21
 Identities = 26/61 (42%), Positives = 35/61 (57%), Gaps = 13/61 (21%)

Query: 9  RFGCKNKPFYRVMAADSRSPRDG-------------QDSGKRMGLNFDRVKYWLSVGAQP 55
          R G K +PFYR++ ADSRSPRDG             +     + L+ +R+KYWL  GAQP
Sbjct: 1  RGGRKKRPFYRIVVADSRSPRDGRFIEELGTYNPIAKPQEPEVKLDEERIKYWLGKGAQP 60

Query: 56 S 56
          +
Sbjct: 61 T 61

Length = 61

>gnl|CDD|184724 PRK14520, rpsP, 30S ribosomal protein S16; Provisional

 Score = 82.0 bits (203), Expect = 2e-20
 Identities = 30/74 (40%), Positives = 46/74 (62%), Gaps = 11/74 (14%)

Query: 1  MVVRIRLARFGCKNKPFYRVMAADSRSPRDGQ---DSGK--------RMGLNFDRVKYWL 49
          M V+I+L R G    P YR++ ADSR+ RDG+   + G+         + ++ +R +YWL
Sbjct: 1  MAVKIKLKRLGKIRNPQYRIVVADSRTKRDGRAIEEIGRYHPKEEPSLIEIDSERAQYWL 60

Query: 50 SVGAQPSDPVQRIL 63
          SVGAQP++PV  +L
Sbjct: 61 SVGAQPTEPVLALL 74

Length = 155

>gnl|CDD|172991 PRK14525, rpsP, 30S ribosomal protein S16; Provisional

 Score = 73.5 bits (180), Expect = 8e-18
 Identities = 34/86 (39%), Positives = 46/86 (53%), Gaps = 11/86 (12%)

Query: 1  MVVRIRLARFGCKNKPFYRVMAADSRSPRDG---QDSG--------KRMGLNFDRVKYWL 49
          M V +RL+R G    PFY V+A DSR+ RDG   +D G        +R+ L  +R+++WL
Sbjct: 1  MAVVLRLSRAGTHKAPFYHVVATDSRNARDGKYLEDVGIYDPTKRPERIELKVERIEHWL 60

Query: 50 SVGAQPSDPVQRILFRAGLLPPPPMV 75
            GA+PS  V  IL RA     P   
Sbjct: 61 KAGAKPSQTVAMILKRAAKAAAPAAP 86

Length = 88

>gnl|CDD|176950 CHL00005, rps16, ribosomal protein S16

 Score = 62.0 bits (151), Expect = 2e-13
 Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 11/77 (14%)

Query: 3  VRIRLARFGCKNKPFYRVMAADSRSPRDGQDSGKRMG----------LNFDRVKYWLSVG 52
          V++RL R G K +  YR++A D RS R+G+D  +++G          LN   + Y+L  G
Sbjct: 2  VKLRLKRCGRKQQAVYRIVAIDVRSRREGRDL-EKVGFYDPIKNQTYLNVPAILYFLEKG 60

Query: 53 AQPSDPVQRILFRAGLL 69
          AQP++ V  IL +A + 
Sbjct: 61 AQPTETVYDILKKAEVF 77

Length = 82

>gnl|CDD|172990 PRK14524, rpsP, 30S ribosomal protein S16; Provisional

 Score = 60.7 bits (147), Expect = 8e-13
 Identities = 29/79 (36%), Positives = 43/79 (54%), Gaps = 11/79 (13%)

Query: 2  VVRIRLARFGCKNKPFYRVMAADSRSPRDGQ-----------DSGKRMGLNFDRVKYWLS 50
          +VRIRL R G + +PFYR++  DSR  RDG                 + ++ +R   W+ 
Sbjct: 1  MVRIRLTRMGKRKQPFYRIVVVDSRKRRDGAYIESLGYYNPLKEPYEIKVDVERAVEWIL 60

Query: 51 VGAQPSDPVQRILFRAGLL 69
           GAQPSD V+ IL + G++
Sbjct: 61 KGAQPSDTVRDILRKFGVM 79

Length = 94

>gnl|CDD|172989 PRK14523, rpsP, 30S ribosomal protein S16; Provisional

 Score = 50.2 bits (119), Expect = 2e-08
 Identities = 32/93 (34%), Positives = 45/93 (48%), Gaps = 13/93 (13%)

Query: 2  VVRIRLARFGCKNKPFYRVMAADSRSPRDG-------------QDSGKRMGLNFDRVKYW 48
          +V IRLAR G K  PFY ++ AD R PRDG             +    R+ L  +R+ +W
Sbjct: 1  MVVIRLARGGSKKNPFYHIVVADRRKPRDGRFIERVGYYNPMARGQDIRLQLEKERISHW 60

Query: 49 LSVGAQPSDPVQRILFRAGLLPPPPMVAMGRKG 81
          L+ GAQ S  V+ ++ +    P        RKG
Sbjct: 61 LNQGAQTSLRVKHLIKKLEKSPEEAQKGGMRKG 93

Length = 137

>gnl|CDD|172988 PRK14522, rpsP, 30S ribosomal protein S16; Provisional

 Score = 43.4 bits (102), Expect = 4e-06
 Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 10/67 (14%)

Query: 1  MVVRIRLARFGCKNKPFYRVMAADSRSPRDGQ----------DSGKRMGLNFDRVKYWLS 50
          M ++IRL + G +N   YR++ AD  SPRDG+           S +   L  +R+ YWL+
Sbjct: 1  MALKIRLRQQGRRNHVVYRLVLADVESPRDGKYIELLGWYDPHSEQNYQLKSERIFYWLN 60

Query: 51 VGAQPSD 57
           GA+ ++
Sbjct: 61 QGAELTE 67

Length = 116

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	164
KOG3419	112	consensus Mitochondrial/chloroplast ribosomal prot	100.0
PRK14525	88	rpsP 30S ribosomal protein S16; Provisional	100.0
PRK14521	186	rpsP 30S ribosomal protein S16; Provisional	99.97
CHL00005	82	rps16 ribosomal protein S16	99.97
PRK14524	94	rpsP 30S ribosomal protein S16; Provisional	99.97
PRK14522	116	rpsP 30S ribosomal protein S16; Provisional	99.97
TIGR00002	78	S16 ribosomal protein S16. This model describes ri	99.97
PRK14520	155	rpsP 30S ribosomal protein S16; Provisional	99.97
PRK14523	137	rpsP 30S ribosomal protein S16; Provisional	99.96
COG0228	87	RpsP Ribosomal protein S16 [Translation, ribosomal	99.96
PRK00040	75	rpsP 30S ribosomal protein S16; Reviewed	99.96
PF00886	62	Ribosomal_S16: Ribosomal protein S16; InterPro: IP	99.84

>KOG3419 consensus Mitochondrial/chloroplast ribosomal protein S16 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=4e-35  Score=224.79  Aligned_cols=93  Identities=59%  Similarity=0.989  Sum_probs=86.1

Q ss_pred             CceEEeeccCCCCCCCeeEEEEeecCCCCCCCC--------------CCccEEEehHHHHHHHHCCCccCHHHHHHHHHc
Q 031206            1 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGQD--------------SGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRA   66 (164)
Q Consensus         1 MaVKIRLaR~G~KnrPFYRIVVaDsRspRDGk~--------------~~k~I~Ln~eRIkyWL~~GAQPTdtV~~LLkka   66 (164)
                      |+|+|||+|+||||||||||||+|+|++|||++              +++.+.||+|||+|||++|||||+||.+||+++
T Consensus         1 ~~vkIRLar~GcknRPfY~Ivva~~r~~rdgk~iE~lG~ydPlp~~~~~~~v~Ln~dRikyWl~~GAqpS~tv~~Ll~~a   80 (112)
T KOG3419|consen    1 MVVKIRLARFGCKNRPFYRIVVADSRKRRDGKPIEQLGTYDPLPNQDNEKLVALNFDRIKYWLGVGAQPSDTVEELLGKA   80 (112)
T ss_pred             CeEEEeehhcCccCCCeeEEEEeeccccccCCchhheecccCCCCCCCCcceeecHHHHHHHHhcCCccChHHHHHHHhc
Confidence            789999999999999999999999999999953              357899999999999999999999999999999


Q ss_pred             CCCCCCCcccccccCCCCCC-CCCCCCC
Q 031206           67 GLLPPPPMVAMGRKGGPRDT-RPVDPMT   93 (164)
Q Consensus        67 Gil~~~p~~~~~~kg~~~~~-~p~~~~~   93 (164)
                      |++|.+|+..++.|.+.+.. ++++|++
T Consensus        81 Gl~p~~p~~~~~a~~~rr~~a~~~~~~~  108 (112)
T KOG3419|consen   81 GLFPIHPMTFMNAKRNRRLTAEQVLPVE  108 (112)
T ss_pred             CCCCCchhhhhccccchhhhhhhccchh
Confidence            99999999999999999776 6666654

>PRK14525 rpsP 30S ribosomal protein S16; Provisional

Probab=100.00  E-value=4.7e-33  Score=205.72  Aligned_cols=74  Identities=43%  Similarity=0.733  Sum_probs=67.8

Q ss_pred             CceEEeeccCCCCCCCeeEEEEeecCCCCCCCCC-----------CccEEEehHHHHHHHHCCCccCHHHHHHHHHcCCC
Q 031206            1 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGQDS-----------GKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL   69 (164)
Q Consensus         1 MaVKIRLaR~G~KnrPFYRIVVaDsRspRDGk~~-----------~k~I~Ln~eRIkyWL~~GAQPTdtV~~LLkkaGil   69 (164)
                      |+|+|||+|+|+||+|||||||+|+|++|||+.+           ++.+.||+||++|||++|||||+||.+||+++|+.
T Consensus         1 M~VkIRL~R~G~k~~P~YrIVv~dsr~~RdGk~IE~lG~YnP~~~~~~i~ln~eri~~WL~~GAqpT~tV~~Ll~~~g~~   80 (88)
T PRK14525          1 MAVVLRLSRAGTHKAPFYHVVATDSRNARDGKYLEDVGIYDPTKRPERIELKVERIEHWLKAGAKPSQTVAMILKRAAKA   80 (88)
T ss_pred             CcEEEehhhCCCCCCCeEEEEEeecCCCCCCCceeEEecccCCCCCceEEEcHHHHHHHHHCCCccCHHHHHHHHHcCcc
Confidence            8999999999999999999999999999999532           35799999999999999999999999999999998


Q ss_pred             CCCCc
Q 031206           70 PPPPM   74 (164)
Q Consensus        70 ~~~p~   74 (164)
                      ..+|.
T Consensus        81 ~~~~~   85 (88)
T PRK14525         81 AAPAA   85 (88)
T ss_pred             CCCCC
Confidence            65443

>PRK14521 rpsP 30S ribosomal protein S16; Provisional

Probab=99.97  E-value=2.7e-32  Score=224.18  Aligned_cols=84  Identities=46%  Similarity=0.716  Sum_probs=77.2

Q ss_pred             CceEEeeccCCCCCCCeeEEEEeecCCCCCCCCC-----------CccEEEehHHHHHHHHCCCccCHHHHHHHHHcCCC
Q 031206            1 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGQDS-----------GKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL   69 (164)
Q Consensus         1 MaVKIRLaR~G~KnrPFYRIVVaDsRspRDGk~~-----------~k~I~Ln~eRIkyWL~~GAQPTdtV~~LLkkaGil   69 (164)
                      |+|||||+|+|+|++|||||||+|+|++|||+++           +..|.||+|||+|||++|||||+||.+||+++|++
T Consensus         1 M~VkIRL~R~G~KkrPfYrIVVaDsR~~RDGk~IE~lG~YnP~~~~~~i~Ln~eRi~~WL~~GAqPTdtV~~lL~~~g~~   80 (186)
T PRK14521          1 MAVKIRLQRHGRKGKAFYWIVAADSRAPRDGKFIEKIGTYNPNTNPATVDLNFDRAVYWLMNGAQPTDTARNILSYEGVL   80 (186)
T ss_pred             CcEeehhhhCCCCCCCeEEEEEEeCCCCCCCCceeeeeecCCCCCCceEEEcHHHHHHHHHCCCcCCHHHHHHHHHcccc
Confidence            9999999999999999999999999999999532           35899999999999999999999999999999999


Q ss_pred             CCCCcccccccCCCC
Q 031206           70 PPPPMVAMGRKGGPR   84 (164)
Q Consensus        70 ~~~p~~~~~~kg~~~   84 (164)
                      ++++...+.+||...
T Consensus        81 ~k~~~~~~~~kg~~~   95 (186)
T PRK14521         81 LKKHLLGGVAKGAFT   95 (186)
T ss_pred             hhhhhhcccCCCccc
Confidence            988888788787654

>CHL00005 rps16 ribosomal protein S16

Probab=99.97  E-value=5.2e-32  Score=197.89  Aligned_cols=71  Identities=37%  Similarity=0.596  Sum_probs=65.6

Q ss_pred             ceEEeeccCCCCCCCeeEEEEeecCCCCCCC---------CCCccEEEehHHHHHHHHCCCccCHHHHHHHHHcCCCCCC
Q 031206            2 VVRIRLARFGCKNKPFYRVMAADSRSPRDGQ---------DSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLLPPP   72 (164)
Q Consensus         2 aVKIRLaR~G~KnrPFYRIVVaDsRspRDGk---------~~~k~I~Ln~eRIkyWL~~GAQPTdtV~~LLkkaGil~~~   72 (164)
                      ||+|||+|+|+||+|||||||+|+|++|||+         |..+.+.||+||++|||++|||||+||.+||+++|++++.
T Consensus         1 ~vkIRL~R~G~kk~P~YrIVvadsr~~RdGk~iE~lG~YnP~~~~~~ln~eri~~Wl~~GAqpt~tV~~Ll~~~g~~~~~   80 (82)
T CHL00005          1 MVKLRLKRCGRKQQAVYRIVAIDVRSRREGRDLEKVGFYDPIKNQTYLNVPAILYFLEKGAQPTETVYDILKKAEVFKEL   80 (82)
T ss_pred             CeEEecccCCCCCCCeEEEEEEeCCCCCCCcceeEeeeccCCCcccEEeHHHHHHHHHCcCccCHHHHHHHHHcCchhhh
Confidence            5899999999999999999999999999995         3456799999999999999999999999999999987643

>PRK14524 rpsP 30S ribosomal protein S16; Provisional

Probab=99.97  E-value=1e-31  Score=200.55  Aligned_cols=76  Identities=38%  Similarity=0.677  Sum_probs=68.1

Q ss_pred             ceEEeeccCCCCCCCeeEEEEeecCCCCCCCCC-----------CccEEEehHHHHHHHHCCCccCHHHHHHHHHcCCCC
Q 031206            2 VVRIRLARFGCKNKPFYRVMAADSRSPRDGQDS-----------GKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLLP   70 (164)
Q Consensus         2 aVKIRLaR~G~KnrPFYRIVVaDsRspRDGk~~-----------~k~I~Ln~eRIkyWL~~GAQPTdtV~~LLkkaGil~   70 (164)
                      ||+|||+|+|+||+|||||||+|+|++|||+++           +..+.||+||++|||++|||||+||.+||+++|+++
T Consensus         1 mVkIRL~R~G~KkrPfYrIVvadsr~~RdGk~iE~lG~YnP~~~~~~i~l~~eri~~Wl~~GAqpT~tV~~Llkk~g~~~   80 (94)
T PRK14524          1 MVRIRLTRMGKRKQPFYRIVVVDSRKRRDGAYIESLGYYNPLKEPYEIKVDVERAVEWILKGAQPSDTVRDILRKFGVMK   80 (94)
T ss_pred             CcEEhhccCCCCCCCeEEEEEEecCCCCCCCceeEeeecCCCCCCceEEEcHHHHHHHHHcCCccCHHHHHHHHHccchh
Confidence            489999999999999999999999999999532           357899999999999999999999999999999987


Q ss_pred             CCCcccc
Q 031206           71 PPPMVAM   77 (164)
Q Consensus        71 ~~p~~~~   77 (164)
                      +....+.
T Consensus        81 ~~~~~~~   87 (94)
T PRK14524         81 KVHEIKY   87 (94)
T ss_pred             hhHHhhh
Confidence            6654443

>PRK14522 rpsP 30S ribosomal protein S16; Provisional

Probab=99.97  E-value=9.1e-32  Score=207.75  Aligned_cols=80  Identities=31%  Similarity=0.552  Sum_probs=72.0

Q ss_pred             CceEEeeccCCCCCCCeeEEEEeecCCCCCCCCC----------CccEEEehHHHHHHHHCCCccCHHHHHHHHH--cCC
Q 031206            1 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGQDS----------GKRMGLNFDRVKYWLSVGAQPSDPVQRILFR--AGL   68 (164)
Q Consensus         1 MaVKIRLaR~G~KnrPFYRIVVaDsRspRDGk~~----------~k~I~Ln~eRIkyWL~~GAQPTdtV~~LLkk--aGi   68 (164)
                      |+|+|||+|+|+||+|||||||+|+|++|||+++          .+.+.||+|||+|||++|||||+||.+||++  +|+
T Consensus         1 MmVkIRLaR~G~KkrPfYrIVVaDsR~~RDGk~IE~lG~YdP~~~~~v~Ln~eRi~yWL~~GAqPS~tV~~LLkk~~~Gi   80 (116)
T PRK14522          1 MALKIRLRQQGRRNHVVYRLVLADVESPRDGKYIELLGWYDPHSEQNYQLKSERIFYWLNQGAELTEKAGALVKQGAPGV   80 (116)
T ss_pred             CcEEEecccCCCCCCCeEEEEEeecCCCCCCCcceeeeccCCCCCCceEECHHHHHHHHHCCCccCHHHHHHHHhhhccc
Confidence            9999999999999999999999999999999542          2579999999999999999999999999999  699


Q ss_pred             CCCCCccccccc
Q 031206           69 LPPPPMVAMGRK   80 (164)
Q Consensus        69 l~~~p~~~~~~k   80 (164)
                      +++....+-.+|
T Consensus        81 ~~~~~~~k~~~~   92 (116)
T PRK14522         81 YSELMAKKVARK   92 (116)
T ss_pred             chhHHHHHHHHH
Confidence            998876654433

>TIGR00002 S16 ribosomal protein S16

Probab=99.97  E-value=5.7e-31  Score=190.50  Aligned_cols=67  Identities=55%  Similarity=0.952  Sum_probs=62.6

Q ss_pred             eEEeeccCCCCCCCeeEEEEeecCCCCCCCCC-----------CccEEEehHHHHHHHHCCCccCHHHHHHHHHcCCC
Q 031206            3 VRIRLARFGCKNKPFYRVMAADSRSPRDGQDS-----------GKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL   69 (164)
Q Consensus         3 VKIRLaR~G~KnrPFYRIVVaDsRspRDGk~~-----------~k~I~Ln~eRIkyWL~~GAQPTdtV~~LLkkaGil   69 (164)
                      |+|||+|+|+||+|||||||+|+|++|||+++           ++.+.||+||++|||++|||||+||++||+++|++
T Consensus         1 vkIRL~R~G~k~~PfYrIVv~d~r~~RdGk~iE~lG~YnP~~~~~~i~l~~~ri~~Wl~~GAqps~tV~~Ll~~~g~~   78 (78)
T TIGR00002         1 VKIRLKRGGRKKRPFYRIVVADSRSRRDGRYIEELGFYNPLTKESRVKLNVERIKYWLSKGAQPTDTVRNLLKKAGVF   78 (78)
T ss_pred             CEEecccCCCCCCCeEEEEEEecCCCCCCCceeEeeeccCCCCCcEEEEcHHHHHHHHHCCCccCHHHHHHHHHccCC
Confidence            79999999999999999999999999999532           36799999999999999999999999999999974

This model describes ribosomal S16 of bacteria and organelles.

>PRK14520 rpsP 30S ribosomal protein S16; Provisional

Probab=99.97  E-value=6.1e-31  Score=211.21  Aligned_cols=71  Identities=42%  Similarity=0.755  Sum_probs=66.0

Q ss_pred             CceEEeeccCCCCCCCeeEEEEeecCCCCCCCC-----------CCccEEEehHHHHHHHHCCCccCHHHHHHHHHcCCC
Q 031206            1 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGQD-----------SGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL   69 (164)
Q Consensus         1 MaVKIRLaR~G~KnrPFYRIVVaDsRspRDGk~-----------~~k~I~Ln~eRIkyWL~~GAQPTdtV~~LLkkaGil   69 (164)
                      |+|||||+|+|+||+|||||||+|+|++|||+.           .+..|.||+||++|||++|||||++|.+||+++|++
T Consensus         1 MaVkIRL~R~G~kk~PfYrIVVaDsR~~RDGk~IE~lG~YnP~~~~~~i~ln~eRi~yWL~~GAQPT~~V~~LLk~~g~~   80 (155)
T PRK14520          1 MAVKIKLKRLGKIRNPQYRIVVADSRTKRDGRAIEEIGRYHPKEEPSLIEIDSERAQYWLSVGAQPTEPVLALLKITGDW   80 (155)
T ss_pred             CcEEehhhhCCCCCCCeEEEEEeecCCCCCCCceeeeeccCCCCCCceEEEcHHHHHHHHHCCCccCHHHHHHHHHcchh
Confidence            999999999999999999999999999999953           235789999999999999999999999999999987


Q ss_pred             CC
Q 031206           70 PP   71 (164)
Q Consensus        70 ~~   71 (164)
                      .+
T Consensus        81 ~~   82 (155)
T PRK14520         81 QK   82 (155)
T ss_pred             hh
Confidence            54

>PRK14523 rpsP 30S ribosomal protein S16; Provisional

Probab=99.96  E-value=2.3e-30  Score=204.64  Aligned_cols=83  Identities=39%  Similarity=0.576  Sum_probs=72.7

Q ss_pred             ceEEeeccCCCCCCCeeEEEEeecCCCCCCCCC-------------CccEEEehHHHHHHHHCCCccCHHHHHHHHHcCC
Q 031206            2 VVRIRLARFGCKNKPFYRVMAADSRSPRDGQDS-------------GKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL   68 (164)
Q Consensus         2 aVKIRLaR~G~KnrPFYRIVVaDsRspRDGk~~-------------~k~I~Ln~eRIkyWL~~GAQPTdtV~~LLkkaGi   68 (164)
                      ||+|||+|+|+||+|||||||+|+|++|||+++             .+.+.||+|||+|||++|||||+||.+||+++|+
T Consensus         1 mVkIRL~R~GrKkrPfYRIVVaDsRs~RDGK~IE~LG~YdP~~~~~~~~i~Ln~eRi~yWL~~GAQPS~tV~~LLkkag~   80 (137)
T PRK14523          1 MVVIRLARGGSKKNPFYHIVVADRRKPRDGRFIERVGYYNPMARGQDIRLQLEKERISHWLNQGAQTSLRVKHLIKKLEK   80 (137)
T ss_pred             CcEehhhcCCCCCCCeEEEEEEecCCCCCCCceeeeeecCCCCCCCCceEEECHHHHHHHHHCCCccCHHHHHHHHHccc
Confidence            489999999999999999999999999999532             2479999999999999999999999999999999


Q ss_pred             CCCCCcccccccCCCC
Q 031206           69 LPPPPMVAMGRKGGPR   84 (164)
Q Consensus        69 l~~~p~~~~~~kg~~~   84 (164)
                      ++......+.++|.+.
T Consensus        81 ~~~~~~~~g~~~~~~~   96 (137)
T PRK14523         81 SPEEAQKGGMRKGEFK   96 (137)
T ss_pred             chHHHHhcccccCCcc
Confidence            8887766555555443

>COG0228 RpsP Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]

Probab=99.96  E-value=3.5e-30  Score=190.75  Aligned_cols=66  Identities=59%  Similarity=0.993  Sum_probs=61.8

Q ss_pred             ceEEeeccCCCCCCCeeEEEEeecCCCCCCCCC------------CccEEEehHHHHHHHHCCCccCHHHHHHHHHcC
Q 031206            2 VVRIRLARFGCKNKPFYRVMAADSRSPRDGQDS------------GKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAG   67 (164)
Q Consensus         2 aVKIRLaR~G~KnrPFYRIVVaDsRspRDGk~~------------~k~I~Ln~eRIkyWL~~GAQPTdtV~~LLkkaG   67 (164)
                      +|||||+|+|+||+|||||||||||+||||+.+            ++.++||.||+.|||++||||||||++||+++|
T Consensus         1 ~vkIRL~R~G~kk~P~YrIVVaDsrs~RDGr~IE~lG~ynP~~~~~~~v~l~~eri~~Wl~~GAqpSdtV~~ll~~~g   78 (87)
T COG0228           1 MVKIRLARGGSKKRPFYRIVVADSRSPRDGRFIERLGTYNPLLGKEERVKLDEERILYWLSQGAQPSDTVRRLLKKAG   78 (87)
T ss_pred             CeEEehhhCCCccCCeEEEEEeccCCCCCCcchhhhcccCCCCCccceEEEcHHHHHHHHHcCCcccHHHHHHHHHhh
Confidence            589999999999999999999999999999532            258999999999999999999999999999998

>PRK00040 rpsP 30S ribosomal protein S16; Reviewed

Probab=99.96  E-value=9.4e-30  Score=183.04  Aligned_cols=62  Identities=56%  Similarity=0.979  Sum_probs=57.3

Q ss_pred             ceEEeeccCCCCCCCeeEEEEeecCCCCCCCCC-------------CccEEEehHHHHHHHHCCCccCHHHHHHH
Q 031206            2 VVRIRLARFGCKNKPFYRVMAADSRSPRDGQDS-------------GKRMGLNFDRVKYWLSVGAQPSDPVQRIL   63 (164)
Q Consensus         2 aVKIRLaR~G~KnrPFYRIVVaDsRspRDGk~~-------------~k~I~Ln~eRIkyWL~~GAQPTdtV~~LL   63 (164)
                      ||+|||+|+|+||+|||||||+|+|++|||+++             ++.+.||+||++|||++|||||++|++||
T Consensus         1 ~vkIRL~R~G~k~~P~YrIVv~d~r~~RdGk~iE~lG~ydP~~~~~~~~i~ln~eri~~Wl~~GAqpt~~V~~Ll   75 (75)
T PRK00040          1 MVKIRLARGGAKKRPFYRIVVADSRSPRDGRFIERVGFYNPLAKPAEEEVKLDEERVLYWLGQGAQPTDTVRRLL   75 (75)
T ss_pred             CeEEhhhhCCCCCCCeEEEEEEecCCCCCCCceeEEeecCCCCCCCcceEEEcHHHHHHHHHCCCccCHHHHHhC
Confidence            589999999999999999999999999999532             24899999999999999999999999986

>PF00886 Ribosomal_S16: Ribosomal protein S16; InterPro: IPR000307 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=99.84  E-value=1.1e-21  Score=136.07  Aligned_cols=48  Identities=63%  Similarity=1.147  Sum_probs=44.0

Q ss_pred             cCCCCCCCeeEEEEeecCCCCCCCC---------C-----CccEEEehHHHHHHHHCCCccC
Q 031206            9 RFGCKNKPFYRVMAADSRSPRDGQD---------S-----GKRMGLNFDRVKYWLSVGAQPS   56 (164)
Q Consensus         9 R~G~KnrPFYRIVVaDsRspRDGk~---------~-----~k~I~Ln~eRIkyWL~~GAQPT   56 (164)
                      |+|||++|||||||+|+|++|||+.         .     ++.+.||+|||+|||++|||||
T Consensus         1 R~G~k~~P~YrIVv~d~r~~RdGk~iE~lG~YdP~~~~~~~~~~~l~~eri~~Wl~~GAqpT   62 (62)
T PF00886_consen    1 RMGRKKRPFYRIVVADSRSPRDGKFIEELGFYDPIPNPDEEKQIKLNFERIKYWLSKGAQPT   62 (62)
T ss_dssp             EESSTTEEEEEEEEEETTSSTTSSESEEEEEEETTSSSSSSTSEEETHHHHHHHHHTTEEEE
T ss_pred             CCCCCCCCeEEEEEEeCCcccccchhhccceEcCCCCCCCceeEEeCHHHHHHHHHcCcCCC
Confidence            7899999999999999999999942         2     3589999999999999999998

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S16 is one of the proteins from the small ribosomal subunit. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities [], groups: Eubacterial S16. Algal and plant chloroplast S16. Cyanelle S16. Neurospora crassa mitochondrial S24 (cyt-21). S16 proteins have about 100 amino-acid residues.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2Y14_P 3UZ6_S 2J02_P 1HNZ_P 3V26_P 3KNL_P 1N34_P 2J00_P 1HNW_P 3OHC_P ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	164
1pns_P	83	Crystal Structure Of A Streptomycin Dependent Ribos		4e-12
3fic_P	84	T. Thermophilus 70s Ribosome In Complex With Mrna,		4e-12
1emw_A	88	Solution Structure Of The Ribosomal Protein S16 Fro		4e-12
1jgo_S	91	Crystal Structure Of The Ribosome At 5.5 A Resoluti		2e-10
3bn0_A	112	The Ribosomal Protein S16 From Aquifex Aeolicus Len		2e-08
1p6g_P	82	Real Space Refined Coordinates Of The 30s Subunit F		1e-07
3fih_P	80	Ternary Complex-Bound E.Coli 70s Ribosome. This Ent		1e-07
2gy9_P	78	Structure Of The 30s Subunit Of A Pre-Translocation		1e-07
3bbn_P	88	Homology Model For The Spinach Chloroplast 30s Subu		4e-05

>pdb|1PNS|P Chain P, Crystal Structure Of A Streptomycin Dependent Ribosome From E. Coli, 30s Subunit Of 70s Ribosome. This File, 1pns, Contains The 30s Subunit, Two Trnas, And One Mrna Molecule. The 50s Ribosomal Subunit Is In File 1pnu. Length = 83

Iteration: 1
 Score = 67.0 bits (162), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 33/80 (41%), Positives = 50/80 (62%), Gaps = 12/80 (15%)
Query: 2  VVRIRLARFGCKNKPFYRVMAADSRSPRDGQDSGK------------RMGLNFDRVKYWL 49
          +V+IRLARFG K+ P YR++  D+R  RDG+   K             + ++ +R +YWL
Sbjct: 1  MVKIRLARFGSKHNPHYRIVVTDARRKRDGKYIEKIGYYDPRKTTPDWLKVDVERARYWL 60
Query: 50 SVGAQPSDPVQRILFRAGLL 69
          SVGAQP+D  +R+L +AG+ 
Sbjct: 61 SVGAQPTDTARRLLRQAGVF 80

>pdb|3FIC|P Chain P, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A 6.4 A Cryo-Em Map. This File Contains The 30s Subunit And The Ligands Length = 84

Iteration: 1
 Score = 67.0 bits (162), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 33/80 (41%), Positives = 50/80 (62%), Gaps = 12/80 (15%)
Query: 2  VVRIRLARFGCKNKPFYRVMAADSRSPRDGQDSGK------------RMGLNFDRVKYWL 49
          +V+IRLARFG K+ P YR++  D+R  RDG+   K             + ++ +R +YWL
Sbjct: 1  MVKIRLARFGSKHNPHYRIVVTDARRKRDGKYIEKIGYYDPRKTTPDWLKVDVERARYWL 60
Query: 50 SVGAQPSDPVQRILFRAGLL 69
          SVGAQP+D  +R+L +AG+ 
Sbjct: 61 SVGAQPTDTARRLLRQAGVF 80

>pdb|1EMW|A Chain A, Solution Structure Of The Ribosomal Protein S16 From Thermus Thermophilus Length = 88

Iteration: 1
 Score = 67.0 bits (162), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 33/80 (41%), Positives = 50/80 (62%), Gaps = 12/80 (15%)
Query: 2  VVRIRLARFGCKNKPFYRVMAADSRSPRDGQDSGK------------RMGLNFDRVKYWL 49
          +V+IRLARFG K+ P YR++  D+R  RDG+   K             + ++ +R +YWL
Sbjct: 1  MVKIRLARFGSKHNPHYRIVVTDARRKRDGKYIEKIGYYDPRKTTPDWLKVDVERARYWL 60
Query: 50 SVGAQPSDPVQRILFRAGLL 69
          SVGAQP+D  +R+L +AG+ 
Sbjct: 61 SVGAQPTDTARRLLRQAGVF 80

>pdb|3BN0|A Chain A, The Ribosomal Protein S16 From Aquifex Aeolicus Length = 112

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 48/79 (60%), Gaps = 10/79 (12%)
Query: 1  MVVRIRLARFGCKNKPFYRVMAADSRSPRDGQ--------DSGKRMGLNF--DRVKYWLS 50
          M VRIRLA+FG K+ P YR++  D++SPR+G+        D  +++ +N   ++VK W+ 
Sbjct: 1  MAVRIRLAKFGRKHHPIYRIVVMDAKSPREGKYIDILGTYDPKRKVLINVYPEKVKEWVL 60
Query: 51 VGAQPSDPVQRILFRAGLL 69
           G + S   + IL+  G+L
Sbjct: 61 KGVELSHRAKAILWNHGIL 79

>pdb|1P6G|P Chain P, Real Space Refined Coordinates Of The 30s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp State Of E. Coli 70s Ribosome Length = 82

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 13/75 (17%)
Query: 2  VVRIRLARFGCKNKPFYRVMAADSRSPRDGQ-----------DSGKRMG--LNFDRVKYW 48
          +V IRLAR G K +PFY+V+ ADSR+ R+G+            S K  G  L+ DR+ +W
Sbjct: 1  MVTIRLARHGAKKRPFYQVVVADSRNARNGRFIERVGFFNPIASEKEEGTRLDLDRIAHW 60
Query: 49 LSVGAQPSDPVQRIL 63
          +  GA  SD V  ++
Sbjct: 61 VGQGATISDRVAALI 75

>pdb|3FIH|P Chain P, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry Consists Of The 30s Subunit, Trnas And The Ternary Complex. Length = 80

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 13/75 (17%)
Query: 2  VVRIRLARFGCKNKPFYRVMAADSRSPRDGQ-----------DSGKRMG--LNFDRVKYW 48
          +V IRLAR G K +PFY+V+ ADSR+ R+G+            S K  G  L+ DR+ +W
Sbjct: 1  MVTIRLARHGAKKRPFYQVVVADSRNARNGRFIERVGFFNPIASEKEEGTRLDLDRIAHW 60
Query: 49 LSVGAQPSDPVQRIL 63
          +  GA  SD V  ++
Sbjct: 61 VGQGATISDRVAALI 75

>pdb|2GY9|P Chain P, Structure Of The 30s Subunit Of A Pre-Translocational E. Coli Ribosome Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1056 Length = 78

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 17/77 (22%)
Query: 2  VVRIRLARFGCKNKPFYRVMAADSRSPRDG---------------QDSGKRMGLNFDRVK 46
          +V IRLAR G K +PFY+V+ ADSR+ R+G               ++ G R  L+ DR+ 
Sbjct: 1  MVTIRLARHGAKKRPFYQVVVADSRNARNGRFIERVGFFNPIASEKEEGTR--LDLDRIA 58
Query: 47 YWLSVGAQPSDPVQRIL 63
          +W+  GA  SD V  ++
Sbjct: 59 HWVGQGATISDRVAALI 75

>pdb|3BBN|P Chain P, Homology Model For The Spinach Chloroplast 30s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome Length = 88

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 9/77 (11%)
Query: 2  VVRIRLARFGCKNKPFYRVMAADSRSPRDGQDSGK---------RMGLNFDRVKYWLSVG 52
          +V++RL R G K +  YR++A D RS R+G+D  K         +  LN   +  +L  G
Sbjct: 1  MVKLRLKRCGRKQRAVYRIVAIDVRSRREGRDLQKVGFYDPIKSQTYLNVPAILDFLEKG 60
Query: 53 AQPSDPVQRILFRAGLL 69
          AQP++ V  IL RA + 
Sbjct: 61 AQPTETVYDILKRAEVF 77

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	164
3bn0_A	112	30S ribosomal protein S16; ribonucleoprotein, ribo	1e-35
3pys_P	83	30S ribosomal protein S16; ribosome, IGR, IRES, PS	6e-32
3bbn_P	88	Ribosomal protein S16; small ribosomal subunit, sp	2e-28
3r8n_P	82	30S ribosomal protein S16; protein biosynthesis, R	6e-28

>3bn0_A 30S ribosomal protein S16; ribonucleoprotein, ribosome; 2.00A {Aquifex aeolicus} SCOP: d.27.1.1 Length = 112

 Score =  118 bits (299), Expect = 1e-35
 Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 10/98 (10%)

Query: 1  MVVRIRLARFGCKNKPFYRVMAADSRSPRDGQ----------DSGKRMGLNFDRVKYWLS 50
          M VRIRLA+FG K+ P YR++  D++SPR+G+               + +  ++VK W+ 
Sbjct: 1  MAVRIRLAKFGRKHHPIYRIVVMDAKSPREGKYIDILGTYDPKRKVLINVYPEKVKEWVL 60

Query: 51 VGAQPSDPVQRILFRAGLLPPPPMVAMGRKGGPRDTRP 88
           G + S   + IL+  G+L          K        
Sbjct: 61 KGVELSHRAKAILWNHGILKEVVPEGYEMKRVGDYYVF 98

>3pys_P 30S ribosomal protein S16; ribosome, IGR, IRES, PSIV, CRPV; 3.40A {Thermus thermophilus} PDB: 1pnx_P 1voq_P 1vos_P 1vov_P 1vox_P 1voz_P 1pns_P 3ms0_P 3mr8_P 3pyq_P 3pyn_P 3pyu_P 3fic_P* 1emw_A 1fjg_P* 1hnw_P* 1hnx_P* 1hnz_P* 1hr0_P 1i94_P* ... Length = 83

 Score =  108 bits (273), Expect = 6e-32
 Identities = 32/81 (39%), Positives = 50/81 (61%), Gaps = 12/81 (14%)

Query: 2  VVRIRLARFGCKNKPFYRVMAADSRSPRDG------------QDSGKRMGLNFDRVKYWL 49
          +V+IRLARFG K+ P YR++  D+R  RDG            + +   + ++ +R +YWL
Sbjct: 1  MVKIRLARFGSKHNPHYRIVVTDARRKRDGKYIEKIGYYDPRKTTPDWLKVDVERARYWL 60

Query: 50 SVGAQPSDPVQRILFRAGLLP 70
          SVGAQP+D  +R+L +AG+  
Sbjct: 61 SVGAQPTDTARRLLRQAGVFR 81

>3bbn_P Ribosomal protein S16; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Length = 88

 Score =   99 bits (250), Expect = 2e-28
 Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 9/76 (11%)

Query: 3  VRIRLARFGCKNKPFYRVMAADSRSPRDGQD---------SGKRMGLNFDRVKYWLSVGA 53
          V++RL R G K +  YR++A D RS R+G+D            +  LN   +  +L  GA
Sbjct: 2  VKLRLKRCGRKQRAVYRIVAIDVRSRREGRDLQKVGFYDPIKSQTYLNVPAILDFLEKGA 61

Query: 54 QPSDPVQRILFRAGLL 69
          QP++ V  IL RA + 
Sbjct: 62 QPTETVYDILKRAEVF 77

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	164
3pys_P	83	30S ribosomal protein S16; ribosome, IGR, IRES, PS	99.97
3bn0_A	112	30S ribosomal protein S16; ribonucleoprotein, ribo	99.97
3r8n_P	82	30S ribosomal protein S16; protein biosynthesis, R	99.97
3bbn_P	88	Ribosomal protein S16; small ribosomal subunit, sp	99.97

>3pys_P 30S ribosomal protein S16; ribosome, IGR, IRES, PSIV, CRPV; 3.40A {Thermus thermophilus} PDB: 1pnx_P 1voq_P 1vos_P 1vov_P 1vox_P 1voz_P 1pns_P 3ms0_P 3mr8_P 3pyq_P 3pyn_P 3pyu_P 3fic_P* 1emw_A 1fjg_P* 1hnw_P* 1hnx_P* 1hnz_P* 1hr0_P 1i94_P* ...

Probab=99.97  E-value=3.2e-33  Score=203.63  Aligned_cols=70  Identities=46%  Similarity=0.910  Sum_probs=64.9

Q ss_pred             ceEEeeccCCCCCCCeeEEEEeecCCCCCCCC------------CCccEEEehHHHHHHHHCCCccCHHHHHHHHHcCCC
Q 031206            2 VVRIRLARFGCKNKPFYRVMAADSRSPRDGQD------------SGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL   69 (164)
Q Consensus         2 aVKIRLaR~G~KnrPFYRIVVaDsRspRDGk~------------~~k~I~Ln~eRIkyWL~~GAQPTdtV~~LLkkaGil   69 (164)
                      ||||||+|+|+||+|||||||||+|++|||++            .++.+.||+||++|||++||||||||++||+++|++
T Consensus         1 MvkIRL~R~G~kkrPfYrIVvadsr~~RdGr~IE~lG~YnP~~~~~~~i~l~~eri~~Wl~~GAqptdtV~~ll~~~g~~   80 (83)
T 3pys_P            1 MVKIRLARFGSKHNPHYRIVVTDARRKRDGKYIEKIGYYDPRKTTPDWLKVDVERARYWLSVGAQPTDTARRLLRQAGVF   80 (83)
T ss_dssp             CEEEECCCCSSTTCCCCCCEEEESSSCTTCCCSEECCCBCSSCCSTTCBCCCHHHHHHHHHTCCCBCSTTGGGTGGGCSS
T ss_pred             CcEEeeecCCCCCCCeEEEEEEecCCCCCCCceeeeeEEcCCCCCCceEEEchHHHHHHHHCCCcCCHHHHHHHHHcCcc
Confidence            38999999999999999999999999999953            235899999999999999999999999999999998


Q ss_pred             CC
Q 031206           70 PP   71 (164)
Q Consensus        70 ~~   71 (164)
                      ++
T Consensus        81 ~~   82 (83)
T 3pys_P           81 RQ   82 (83)
T ss_dssp             CC
T ss_pred             cc
Confidence            75

>3bn0_A 30S ribosomal protein S16; ribonucleoprotein, ribosome; 2.00A {Aquifex aeolicus} SCOP: d.27.1.1

Probab=99.97  E-value=2.1e-33  Score=214.43  Aligned_cols=72  Identities=38%  Similarity=0.683  Sum_probs=61.7

Q ss_pred             CceEEeeccCCCCCCCeeEEEEeecCCCCCCCCC----------CccEEEehHHHHHHHHCCCccCHHHHHHHHHcCCCC
Q 031206            1 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGQDS----------GKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLLP   70 (164)
Q Consensus         1 MaVKIRLaR~G~KnrPFYRIVVaDsRspRDGk~~----------~k~I~Ln~eRIkyWL~~GAQPTdtV~~LLkkaGil~   70 (164)
                      |+|+|||+|+|+|++|||||||+|+|++|||+++          ++.+.||+|||+|||++||||||||++||+++|+++
T Consensus         1 M~VkIRL~R~G~KkrPfYrIVVaDsR~~RDGr~IE~lG~YnP~~~~~v~ld~eri~~WL~~GAQPTdtV~~LL~~ag~~~   80 (112)
T 3bn0_A            1 MAVRIRLAKFGRKHHPIYRIVVMDAKSPREGKYIDILGTYDPKRKVLINVYPEKVKEWVLKGVELSHRAKAILWNHGILK   80 (112)
T ss_dssp             -CEEEEEEEEEETTEEEEEEEEEECC------CSEEEEEEETTTTEEEEECHHHHHHHHHTTCEEEHHHHHHHHHTTHHH
T ss_pred             CcEEehhhcCCCCCCCeEEEEEEecCCCCCCCCEeEeeeccCCCcceEEEcHHHHHHHHHcCCccCHHHHHHHHHcCCcc
Confidence            8999999999999999999999999999999542          368999999999999999999999999999999998


Q ss_pred             CC
Q 031206           71 PP   72 (164)
Q Consensus        71 ~~   72 (164)
                      ++
T Consensus        81 ~~   82 (112)
T 3bn0_A           81 EV   82 (112)
T ss_dssp             HH
T ss_pred             cc
Confidence            87

>3bbn_P Ribosomal protein S16; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}

Probab=99.97  E-value=2.7e-33  Score=205.93  Aligned_cols=73  Identities=37%  Similarity=0.570  Sum_probs=67.0

Q ss_pred             ceEEeeccCCCCCCCeeEEEEeecCCCCCCCC---------CCccEEEehHHHHHHHHCCCccCHHHHHHHHHcCCCCCC
Q 031206            2 VVRIRLARFGCKNKPFYRVMAADSRSPRDGQD---------SGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLLPPP   72 (164)
Q Consensus         2 aVKIRLaR~G~KnrPFYRIVVaDsRspRDGk~---------~~k~I~Ln~eRIkyWL~~GAQPTdtV~~LLkkaGil~~~   72 (164)
                      ||||||+|+|+||+|||||||||+|++|||+.         ..+.+.||+||++|||++||||||||++||+++|+++++
T Consensus         1 mvkIRL~R~G~KkrPfYrIVvadsr~~RDGr~IE~lG~YnP~~~~~~l~~eri~~Wl~~GAqpTdtV~~ll~~~g~~~~~   80 (88)
T 3bbn_P            1 MVKLRLKRCGRKQRAVYRIVAIDVRSRREGRDLQKVGFYDPIKSQTYLNVPAILDFLEKGAQPTETVYDILKRAEVFKEF   80 (88)
T ss_dssp             CEEECCCCCSCTTCCCCCCCCEETTSCSSSCCSSCCCCBCTTSSCBCCCTTTSSSSTTSSCEECTTTSSSSTTTTSSSCC
T ss_pred             CeEEecccCCCCCCCeEEEEEEecCCCCCCCcEeEEEeccCCCCceEEcHHHHHHHHHcCCccCHHHHHHHHHcCCcccc
Confidence            48999999999999999999999999999954         346799999999999999999999999999999999988


Q ss_pred             Cc
Q 031206           73 PM   74 (164)
Q Consensus        73 p~   74 (164)
                      +.
T Consensus        81 ~~   82 (88)
T 3bbn_P           81 RL   82 (88)
T ss_dssp             --
T ss_pred             cc
Confidence            74

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	164
d3bn0a1	101	d.27.1.1 (A:2-102) Ribosomal protein S16 {Aquifex	3e-30
d2uubp1	83	d.27.1.1 (P:1-83) Ribosomal protein S16 {Thermus t	3e-30
d2gy9p1	78	d.27.1.1 (P:1-78) Ribosomal protein S16 {Escherich	2e-26

>d3bn0a1 d.27.1.1 (A:2-102) Ribosomal protein S16 {Aquifex aeolicus [TaxId: 63363]} Length = 101

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S16
superfamily: Ribosomal protein S16
family: Ribosomal protein S16
domain: Ribosomal protein S16
species: Aquifex aeolicus [TaxId: 63363]

 Score =  103 bits (259), Expect = 3e-30
 Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 10/92 (10%)

Query: 3  VRIRLARFGCKNKPFYRVMAADSRSPRDGQ----------DSGKRMGLNFDRVKYWLSVG 52
          VRIRLA+FG K+ P YR++  D++SPR+G+               + +  ++VK W+  G
Sbjct: 2  VRIRLAKFGRKHHPIYRIVVMDAKSPREGKYIDILGTYDPKRKVLINVYPEKVKEWVLKG 61

Query: 53 AQPSDPVQRILFRAGLLPPPPMVAMGRKGGPR 84
           + S   + IL+  G+L          K    
Sbjct: 62 VELSHRAKAILWNHGILKEVVPEGYEMKRVGD 93

>d2uubp1 d.27.1.1 (P:1-83) Ribosomal protein S16 {Thermus thermophilus [TaxId: 274]} Length = 83

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S16
superfamily: Ribosomal protein S16
family: Ribosomal protein S16
domain: Ribosomal protein S16
species: Thermus thermophilus [TaxId: 274]

 Score =  103 bits (258), Expect = 3e-30
 Identities = 32/80 (40%), Positives = 49/80 (61%), Gaps = 12/80 (15%)

Query: 3  VRIRLARFGCKNKPFYRVMAADSRSPRDG------------QDSGKRMGLNFDRVKYWLS 50
          V+IRLARFG K+ P YR++  D+R  RDG            + +   + ++ +R +YWLS
Sbjct: 2  VKIRLARFGSKHNPHYRIVVTDARRKRDGKYIEKIGYYDPRKTTPDWLKVDVERARYWLS 61

Query: 51 VGAQPSDPVQRILFRAGLLP 70
          VGAQP+D  +R+L +AG+  
Sbjct: 62 VGAQPTDTARRLLRQAGVFR 81

>d2gy9p1 d.27.1.1 (P:1-78) Ribosomal protein S16 {Escherichia coli [TaxId: 562]} Length = 78

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S16
superfamily: Ribosomal protein S16
family: Ribosomal protein S16
domain: Ribosomal protein S16
species: Escherichia coli [TaxId: 562]

 Score = 93.6 bits (233), Expect = 2e-26
 Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 13/74 (17%)

Query: 3  VRIRLARFGCKNKPFYRVMAADSRSPRDG-------------QDSGKRMGLNFDRVKYWL 49
          V IRLAR G K +PFY+V+ ADSR+ R+G              +  +   L+ DR+ +W+
Sbjct: 2  VTIRLARHGAKKRPFYQVVVADSRNARNGRFIERVGFFNPIASEKEEGTRLDLDRIAHWV 61

Query: 50 SVGAQPSDPVQRIL 63
            GA  SD V  ++
Sbjct: 62 GQGATISDRVAALI 75

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	164
d2uubp1	83	Ribosomal protein S16 {Thermus thermophilus [TaxId	99.97
d3bn0a1	101	Ribosomal protein S16 {Aquifex aeolicus [TaxId: 63	99.97
d2gy9p1	78	Ribosomal protein S16 {Escherichia coli [TaxId: 56	99.96

>d2uubp1 d.27.1.1 (P:1-83) Ribosomal protein S16 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S16
superfamily: Ribosomal protein S16
family: Ribosomal protein S16
domain: Ribosomal protein S16
species: Thermus thermophilus [TaxId: 274]

Probab=99.97  E-value=1.5e-32  Score=197.84  Aligned_cols=70  Identities=46%  Similarity=0.910  Sum_probs=65.4

Q ss_pred             ceEEeeccCCCCCCCeeEEEEeecCCCCCCCC------------CCccEEEehHHHHHHHHCCCccCHHHHHHHHHcCCC
Q 031206            2 VVRIRLARFGCKNKPFYRVMAADSRSPRDGQD------------SGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL   69 (164)
Q Consensus         2 aVKIRLaR~G~KnrPFYRIVVaDsRspRDGk~------------~~k~I~Ln~eRIkyWL~~GAQPTdtV~~LLkkaGil   69 (164)
                      ||+|||+|+|+||+|||||||+|+|++|||++            .++.+.||+||++|||++|||||++|++||+++|++
T Consensus         1 MvkIRL~R~G~k~~P~yrIVv~d~r~~rdGk~IE~lG~YnP~~~~~~~i~l~~eRi~~Wl~~GAqpS~tV~~ll~~~gi~   80 (83)
T d2uubp1           1 MVKIRLARFGSKHNPHYRIVVTDARRKRDGKYIEKIGYYDPRKTTPDWLKVDVERARYWLSVGAQPTDTARRLLRQAGVF   80 (83)
T ss_dssp             CEEEEEEECSBTTBCCEEEEEEETTSCTTSCCSEEEEEECTTCCSSCCEEECHHHHHHHHHHTCEECHHHHHHHHHTTSS
T ss_pred             CeEEecccCCCCCCCeEEEEEEecCCCCCCcceeeeeEECCCCCCCceEEECHHHHHHHHHCCCCCCHHHHHHHHHcCCC
Confidence            48999999999999999999999999999953            236799999999999999999999999999999999


Q ss_pred             CC
Q 031206           70 PP   71 (164)
Q Consensus        70 ~~   71 (164)
                      ++
T Consensus        81 ~~   82 (83)
T d2uubp1          81 RQ   82 (83)
T ss_dssp             CC
T ss_pred             cC
Confidence            86

>d3bn0a1 d.27.1.1 (A:2-102) Ribosomal protein S16 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S16
superfamily: Ribosomal protein S16
family: Ribosomal protein S16
domain: Ribosomal protein S16
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.97  E-value=3.1e-32  Score=201.95  Aligned_cols=72  Identities=36%  Similarity=0.655  Sum_probs=60.5

Q ss_pred             ceEEeeccCCCCCCCeeEEEEeecCCCCCCCCC---------C-ccEEEehHHHHHHHHCCCccCHHHHHHHHHcCCCCC
Q 031206            2 VVRIRLARFGCKNKPFYRVMAADSRSPRDGQDS---------G-KRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLLPP   71 (164)
Q Consensus         2 aVKIRLaR~G~KnrPFYRIVVaDsRspRDGk~~---------~-k~I~Ln~eRIkyWL~~GAQPTdtV~~LLkkaGil~~   71 (164)
                      ||||||+|+||||+|||||||+|+|++|||+.+         . +.+.||.|||+|||++|||||+||++||+++|++++
T Consensus         1 AvkIRL~r~G~k~~p~yrIVv~d~r~~rdGk~iE~lG~ynP~~~~~i~l~~eri~~Wl~~GAqpS~tV~~lL~~~g~~~~   80 (101)
T d3bn0a1           1 AVRIRLAKFGRKHHPIYRIVVMDAKSPREGKYIDILGTYDPKRKVLINVYPEKVKEWVLKGVELSHRAKAILWNHGILKE   80 (101)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEECC------CSEEEEEEETTTTEEEEECHHHHHHHHHTTCEEEHHHHHHHHHTTHHHH
T ss_pred             CeEEecccCCCCCCCeeEEEEeecCCCCCCcceeeeeEECCCCcccccccHHHHHHHHHcCCCcCHHHHHHHHHcCCccc
Confidence            699999999999999999999999999999542         2 468999999999999999999999999999999975


Q ss_pred             CC
Q 031206           72 PP   73 (164)
Q Consensus        72 ~p   73 (164)
                      ..
T Consensus        81 ~~   82 (101)
T d3bn0a1          81 VV   82 (101)
T ss_dssp             HC
T ss_pred             cc
Confidence            43

>d2gy9p1 d.27.1.1 (P:1-78) Ribosomal protein S16 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S16
superfamily: Ribosomal protein S16
family: Ribosomal protein S16
domain: Ribosomal protein S16
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=1.5e-30  Score=185.58  Aligned_cols=64  Identities=42%  Similarity=0.728  Sum_probs=59.1

Q ss_pred             ceEEeeccCCCCCCCeeEEEEeecCCCCCCCCC-------------CccEEEehHHHHHHHHCCCccCHHHHHHHHH
Q 031206            2 VVRIRLARFGCKNKPFYRVMAADSRSPRDGQDS-------------GKRMGLNFDRVKYWLSVGAQPSDPVQRILFR   65 (164)
Q Consensus         2 aVKIRLaR~G~KnrPFYRIVVaDsRspRDGk~~-------------~k~I~Ln~eRIkyWL~~GAQPTdtV~~LLkk   65 (164)
                      +|+|||+|+||||+|||||||+|+|++|||+.+             ++.+.||+||++|||++|||||++|++||++
T Consensus         1 MvkIRL~r~G~k~~P~YrIVv~d~r~~rdgk~iE~lG~YnP~~~~~~~~i~l~~eri~~Wl~~GAqps~~V~~LLkk   77 (78)
T d2gy9p1           1 MVTIRLARHGAKKRPFYQVVVADSRNARNGRFIERVGFFNPIASEKEEGTRLDLDRIAHWVGQGATISDRVAALIKE   77 (78)
T ss_dssp             CEEEEEEECCBTTBCCEEEEEEETTSCTTSCCSEECCEECSSCCSCSCCEECCHHHHHHHTTTTCEECHHHHHHHHH
T ss_pred             CeEEecccCCCCCCCeEEEEEeecCCCCCCcceeeeeeECCcCCCCccceEecHHHHHHHHHCcCcCCHHHHHHHhh
Confidence            489999999999999999999999999999532             3459999999999999999999999999987