Citrus Sinensis ID: 031207

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160----
Protein Sequence
MEITDKKESDINNTQTVADSVDNNNKDAEERQARELKANLHPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKKVVSGRFWEDLVRRRLATASPPKHICILQQLSIFHKIN
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccHHHHHHHHHcccccccccccEEEEEEcccccccccccHHHHccEEEEEccccHHHHHcccccccccccccccEEEEEccccccccccccccccEEEEEEccccHHHHHHHHHHHHHccccccccEEEEEEEEEEEEcc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccccccccEEEEEEEccccccccccccHHHEEEEEEEEEHHHHHHHHHHcccHHHcccccEEEEEEcccccccccccccccEEEEEEccccHHHHHHHHHHHHHHHHHcccccEEEEEEcccccccc
Coil and Loop (DISEMBL)
meitdkkesdinnTQTVADSVDNNNKDAEERQARELKAnlhplknkfvfwytrrtpgvrtqtsyedNIKKIVDFSTVEGFWVCYchlarpsllpsptdlhlfkegirplwedsancnggkWIIRFKKVVSGRFWEDLVRRRLatasppkhicILQQLSIFHKIN
Flexible Loop (DISEMBL)
meitdkkesdinntqtvadsvdnnnKDAEERQARelkanlhplknkfvfwytrrtpgvrtqtsyednIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKKVVSGRFWEDLVRRRlatasppkhicilqqlsifhkin
Low Complexity Region (SEG)
MEITDKKESDINNTQTVADSVDNNNKDAEERQARELKANLHPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKKVVSGRFWEDLVRRRLATASPPKHICILQQLSIFHKIN
Disordered region (IsUnstruct)
***************************************LHPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKKVVSGRFWEDLVRRRLATASPPKHICILQQLSIFH***
Disordered Region (DISOPRED)
******************************************LKNKFVFWYT***************IKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKKVVSGRFWEDLVRRRLATASPPKHICILQQLSIFHKI*
Disordered Region (DISEMBL)
*********DINNTQTVADSVDNNNKDAEERQARELKANLHPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKKVVSGRFWEDLVRRRLATASPPKHICILQQLSIFHKIN
Disordered Region (DISPRO)
************************************KANLHPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKKVVSGRFWEDLVRRRLATASPPKHICILQQLSI*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEITDKKESDxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKKVVSGRFWEDLVRRRLATASPPKHICILQQLSIFHKIN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	164	2.2.26 [Sep-21-2011]
Q9FK59	221	Eukaryotic translation in	yes	no	0.829	0.615	0.673	1e-51
A3RCV9	232	Eukaryotic translation in	N/A	no	0.652	0.461	0.851	2e-50
Q10NQ9	227	Eukaryotic translation in	yes	no	0.621	0.449	0.834	6e-47
O60573	245	Eukaryotic translation in	yes	no	0.847	0.567	0.447	5e-30
Q8BMB3	245	Eukaryotic translation in	yes	no	0.628	0.420	0.548	2e-29
Q22888	212	Eukaryotic translation in	yes	no	0.597	0.462	0.408	2e-18
Q9P975	209	Eukaryotic translation in	N/A	no	0.676	0.531	0.388	6e-17
Q75AV8	211	Eukaryotic translation in	yes	no	0.512	0.398	0.441	3e-16
Q3UTA9	244	Eukaryotic translation in	no	no	0.634	0.426	0.351	2e-15
A6NMX2	242	Eukaryotic translation in	no	no	0.542	0.367	0.387	2e-15

>sp|Q9FK59|IF4E5_ARATH Eukaryotic translation initiation factor NCBP OS=Arabidopsis thaliana GN=NCBP PE=2 SV=1

 Score =  201 bits (512), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 95/141 (67%), Positives = 115/141 (81%), Gaps = 5/141 (3%)

Query: 1   MEITDKKESDINNTQTVADSVDNN---NKDAEERQARELKANLHPLKNKFVFWYTRRTPG 57
           ME+ D+++ +I ++  + DS+ ++   +  +EER++RELK   HPL+ KF  WYTRRTPG
Sbjct: 1   MEVLDRRDDEIRDSGNM-DSIKSHYVTDSVSEERRSRELKDGDHPLRYKFSIWYTRRTPG 59

Query: 58  VRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCN 117
           VR Q SYEDNIKK+V+FSTVEGFW CYCHLAR SLLPSPTDLH FK+GIRPLWED ANCN
Sbjct: 60  VRNQ-SYEDNIKKMVEFSTVEGFWACYCHLARSSLLPSPTDLHFFKDGIRPLWEDGANCN 118

Query: 118 GGKWIIRFKKVVSGRFWEDLV 138
           GGKWIIRF KVVS RFWEDL+
Sbjct: 119 GGKWIIRFSKVVSARFWEDLL 139

Recognizes and binds the 7-methylguanosine-containing mRNA cap during an early step in the initiation of protein synthesis and facilitates ribosome binding by inducing the unwinding of the mRNAs secondary structures.
Arabidopsis thaliana (taxid: 3702)

>sp|A3RCV9|IF4E3_WHEAT Eukaryotic translation initiation factor NCBP OS=Triticum aestivum GN=NCBP PE=2 SV=1

 Score =  197 bits (502), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 92/108 (85%), Positives = 96/108 (88%), Gaps = 1/108 (0%)

Query: 31  RQARELKANLHPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARP 90
           R+ RELKA LHPL+ K V WYTRRTPG R+Q SYEDNIKKIVDFSTVE FWVCYCHLARP
Sbjct: 44  RRNRELKAGLHPLRRKLVLWYTRRTPGTRSQ-SYEDNIKKIVDFSTVESFWVCYCHLARP 102

Query: 91  SLLPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKKVVSGRFWEDLV 138
           S LPSPTDLHLFKEG+RPLWED AN NGGKWIIRFKK VSGRFWEDLV
Sbjct: 103 SSLPSPTDLHLFKEGVRPLWEDPANRNGGKWIIRFKKAVSGRFWEDLV 150

Recognizes and binds the 7-methylguanosine-containing mRNA cap during an early step in the initiation of protein synthesis and facilitates ribosome binding by inducing the unwinding of the mRNAs secondary structures.

Triticum aestivum (taxid: 4565)

>sp|Q10NQ9|IF4E3_ORYSJ Eukaryotic translation initiation factor NCBP OS=Oryza sativa subsp. japonica GN=NCBP PE=2 SV=1

 Score =  186 bits (472), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 86/103 (83%), Positives = 90/103 (87%), Gaps = 1/103 (0%)

Query: 36  LKANLHPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPS 95
           LKA  HPL+ +FV WYTRRTPG R+Q SYEDNIKKIVDFSTVE FWVCYCHL RP  LPS
Sbjct: 44  LKAGFHPLRRRFVLWYTRRTPGARSQ-SYEDNIKKIVDFSTVESFWVCYCHLTRPVSLPS 102

Query: 96  PTDLHLFKEGIRPLWEDSANCNGGKWIIRFKKVVSGRFWEDLV 138
           PTDLHLFKEGIRPLWED AN +GGKWIIRFKK VSGRFWEDLV
Sbjct: 103 PTDLHLFKEGIRPLWEDPANRSGGKWIIRFKKTVSGRFWEDLV 145

Recognizes and binds the 7-methylguanosine-containing mRNA cap during an early step in the initiation of protein synthesis and facilitates ribosome binding by inducing the unwinding of the mRNAs secondary structures.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O60573|IF4E2_HUMAN Eukaryotic translation initiation factor 4E type 2 OS=Homo sapiens GN=EIF4E2 PE=1 SV=1

 Score =  130 bits (326), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 64/143 (44%), Positives = 91/143 (63%), Gaps = 4/143 (2%)

Query: 5   DKKESDINNTQTVAD---SVDNNNKDAEERQARELKANLHPLKNKFVFWYTRRTPGVRTQ 61
           D  +++ N+TQ   +   +  + N+ + +R+A       HPL+  + FWY+RRTPG  T 
Sbjct: 15  DHDQNEENSTQKDGEKEKTERDKNQSSSKRKAVVPGPAEHPLQYNYTFWYSRRTPGRPTS 74

Query: 62  T-SYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGK 120
           + SYE NIK+I  F++VE FW  Y H+ RP  L   +D HLFKEGI+P+WED AN NGGK
Sbjct: 75  SQSYEQNIKQIGTFASVEQFWRFYSHMVRPGDLTGHSDFHLFKEGIKPMWEDDANKNGGK 134

Query: 121 WIIRFKKVVSGRFWEDLVRRRLA 143
           WIIR +K ++ R WE+L+   L 
Sbjct: 135 WIIRLRKGLASRCWENLILAMLG 157

Recognizes and binds the 7-methylguanosine-containing mRNA cap during an early step in the initiation of protein synthesis and facilitates ribosome binding by inducing the unwinding of the mRNAs secondary structures.

Homo sapiens (taxid: 9606)

>sp|Q8BMB3|IF4E2_MOUSE Eukaryotic translation initiation factor 4E type 2 OS=Mus musculus GN=Eif4e2 PE=1 SV=1

 Score =  128 bits (321), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 57/104 (54%), Positives = 73/104 (70%), Gaps = 1/104 (0%)

Query: 41  HPLKNKFVFWYTRRTPGVRTQT-SYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDL 99
           HPL+  + FWY+RRTPG  T + SYE NIK+I  F++VE FW  Y H+ RP  L   +D 
Sbjct: 54  HPLQYNYTFWYSRRTPGRPTSSQSYEQNIKQIGTFASVEQFWKFYSHMVRPGDLTGHSDF 113

Query: 100 HLFKEGIRPLWEDSANCNGGKWIIRFKKVVSGRFWEDLVRRRLA 143
           HLFKEGI+P+WED AN NGGKWIIR +K ++ R WE+L+   L 
Sbjct: 114 HLFKEGIKPMWEDDANKNGGKWIIRLRKGLASRCWENLILAMLG 157

Recognizes and binds the 7-methylguanosine-containing mRNA cap during an early step in the initiation of protein synthesis and facilitates ribosome binding by inducing the unwinding of the mRNAs secondary structures.

Mus musculus (taxid: 10090)

>sp|Q22888|IF4E4_CAEEL Eukaryotic translation initiation factor 4E-4 OS=Caenorhabditis elegans GN=ife-4 PE=2 SV=1

 Score = 91.7 bits (226), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 40/98 (40%), Positives = 55/98 (56%)

Query: 41  HPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLH 100
           H L+  + F Y  R  G      Y   ++ +    +VE FW    H  RP+ +    D+H
Sbjct: 31  HQLQYSYTFSYFMRPTGKFDPEDYASYVQPVGIMKSVEQFWSIMVHFKRPTEMCDKADIH 90

Query: 101 LFKEGIRPLWEDSANCNGGKWIIRFKKVVSGRFWEDLV 138
            FK G++P+WED ANC GGKWIIR KK +S R WE+L+
Sbjct: 91  FFKTGVKPVWEDPANCKGGKWIIRLKKGLSTRIWENLL 128

Recognizes and binds the 7-methylguanosine-containing mRNA cap during an early step in the initiation of protein synthesis and facilitates ribosome binding by inducing the unwinding of the mRNAs secondary structures. All 5 eIF4E proteins bind monomethyl cap structures. Only ife-1, ife-2 and ife-5 bind trimethyl cap structures which result from trans-splicing. Translation of trimethyl cap structure mRNAs may be regulated by intracellular redox state; disulfide bonds change the width and depth of the cap-binding cavity determining selectivity to mRNA caps.

Caenorhabditis elegans (taxid: 6239)

>sp|Q9P975|IF4E_CANAL Eukaryotic translation initiation factor 4E OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=TIF45 PE=3 SV=1

 Score = 86.7 bits (213), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 49/126 (38%), Positives = 67/126 (53%), Gaps = 15/126 (11%)

Query: 2   EITDKKESDINNTQTVADSVDNNNKDAEERQARELKANLHPLKNKFVFWYTRRTPGVRTQ 61
           E+  K E    +++TV DS        EE  A+      HPL +++  WYT+  P     
Sbjct: 4   ELAQKTEELSLDSKTVFDS-------KEEFNAK------HPLNSRWTLWYTK--PQTNKS 48

Query: 62  TSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGKW 121
            ++ D +K ++ FS+VE FW  Y  +   + LP  +D HLFKEGIRP WED AN  GGKW
Sbjct: 49  ENWHDLLKPVITFSSVEEFWGIYNSIPPANQLPLKSDYHLFKEGIRPEWEDEANSKGGKW 108

Query: 122 IIRFKK 127
              F K
Sbjct: 109 QFSFNK 114

Recognizes and binds the 7-methylguanosine-containing mRNA cap during an early step in the initiation of protein synthesis and facilitates ribosome binding by inducing the unwinding of the mRNAs secondary structures.

Candida albicans (strain SC5314 / ATCC MYA-2876) (taxid: 237561)

>sp|Q75AV8|IF4E_ASHGO Eukaryotic translation initiation factor 4E OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=TIF45 PE=3 SV=2

 Score = 84.3 bits (207), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 38/86 (44%), Positives = 51/86 (59%), Gaps = 2/86 (2%)

Query: 41  HPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLH 100
           HPL +K+  WYT+  P V    S+ D ++ +  F+TVE FW     + +P  LP  +D H
Sbjct: 35  HPLNSKWTLWYTK--PPVGDNESWSDLLRPVTSFTTVEEFWAIQNAIPKPRELPLKSDYH 92

Query: 101 LFKEGIRPLWEDSANCNGGKWIIRFK 126
           LF+  IRP WED AN  GGKW  +FK
Sbjct: 93  LFRNDIRPEWEDEANSRGGKWSFQFK 118

Recognizes and binds the 7-methylguanosine-containing mRNA cap during an early step in the initiation of protein synthesis and facilitates ribosome binding by inducing the unwinding of the mRNAs secondary structures.

Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) (taxid: 284811)

>sp|Q3UTA9|I4E1B_MOUSE Eukaryotic translation initiation factor 4E type 1B OS=Mus musculus GN=Eif4e1b PE=2 SV=1

 Score = 82.0 bits (201), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 38/108 (35%), Positives = 60/108 (55%), Gaps = 4/108 (3%)

Query: 20  SVDNNNKDAEERQARELKANLHPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEG 79
           S+    + A      E+ + LHPL+ ++V W+ +         +++DN++ +  F+TVE 
Sbjct: 44  SLKTQRRKAHREHPPEVLSKLHPLQYRWVLWFFKND----RSRAWQDNLQLVTKFNTVED 99

Query: 80  FWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKK 127
           FW  Y H+   S L S  D  LFKEGI P+WED+ N  GG+W++   K
Sbjct: 100 FWAVYSHIKLASKLSSGCDYALFKEGILPMWEDNRNKQGGRWLLSIDK 147

Recognizes and binds the 7-methylguanosine-containing mRNA cap during an early step in the initiation of protein synthesis and facilitates ribosome binding by inducing the unwinding of the mRNAs secondary structures.

Mus musculus (taxid: 10090)

>sp|A6NMX2|I4E1B_HUMAN Eukaryotic translation initiation factor 4E type 1B OS=Homo sapiens GN=EIF4E1B PE=2 SV=3

 Score = 82.0 bits (201), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 36/93 (38%), Positives = 54/93 (58%), Gaps = 4/93 (4%)

Query: 35  ELKANLHPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLP 94
           E+K  LHPL+N++  W+ +         +++DN+  +    TVE FW  Y H+   S L 
Sbjct: 56  EVKLELHPLQNRWALWFFKND----RSRAWQDNLHLVTKVDTVEDFWALYSHIQLASKLS 111

Query: 95  SPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKK 127
           S  D  LFK+GI+P+WEDS N  GG+W++   K
Sbjct: 112 SGCDYALFKDGIQPMWEDSRNKRGGRWLVSLAK 144

Recognizes and binds the 7-methylguanosine-containing mRNA cap during an early step in the initiation of protein synthesis and facilitates ribosome binding by inducing the unwinding of the mRNAs secondary structure.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	164
224125846	226	predicted protein [Populus trichocarpa]	0.841	0.610	0.812	6e-64
225441601	225	PREDICTED: eukaryotic translation initia	0.841	0.613	0.825	1e-62
356498848	231	PREDICTED: eukaryotic translation initia	0.780	0.554	0.851	6e-62
351721708	231	uncharacterized protein LOC100499744 [Gl	0.780	0.554	0.843	2e-61
255630990	231	unknown [Glycine max]	0.780	0.554	0.843	2e-61
156153162	233	cap-binding protein-like protein [Phaseo	0.780	0.549	0.828	7e-61
255568896	222	eukaryotic translation initiation factor	0.835	0.617	0.815	7e-61
357497325	226	Eukaryotic translation initiation factor	0.756	0.548	0.833	5e-56
449446752	238	PREDICTED: eukaryotic translation initia	0.774	0.533	0.781	2e-55
449509545	155	PREDICTED: eukaryotic translation initia	0.768	0.812	0.779	9e-55

>gi|224125846|ref|XP_002319689.1| predicted protein [Populus trichocarpa] gi|222858065|gb|EEE95612.1| predicted protein [Populus trichocarpa]

 Score =  248 bits (633), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 117/144 (81%), Positives = 130/144 (90%), Gaps = 6/144 (4%)

Query: 1   MEITDKKESDINNTQTVADSVDNN------NKDAEERQARELKANLHPLKNKFVFWYTRR 54
           MEI++KKE + NN  +   ++D++      +K++EERQARELKA LHPLKNKF+FWYTRR
Sbjct: 1   MEISEKKEPENNNNISQTATLDSSSTTDIIDKESEERQARELKAGLHPLKNKFIFWYTRR 60

Query: 55  TPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSA 114
           TPGVRTQTSYEDNIKKIV+FSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSA
Sbjct: 61  TPGVRTQTSYEDNIKKIVEFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSA 120

Query: 115 NCNGGKWIIRFKKVVSGRFWEDLV 138
           NCNGGKWIIRFKKVVSGRFWEDLV
Sbjct: 121 NCNGGKWIIRFKKVVSGRFWEDLV 144

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225441601|ref|XP_002281697.1| PREDICTED: eukaryotic translation initiation factor 4E type 3 [Vitis vinifera] gi|297739767|emb|CBI29949.3| unnamed protein product [Vitis vinifera]

 Score =  243 bits (621), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 118/143 (82%), Positives = 130/143 (90%), Gaps = 5/143 (3%)

Query: 1   MEITDKKESDIN--NTQTVADSVD-NNNKDAE--ERQARELKANLHPLKNKFVFWYTRRT 55
           MEIT+KKE++    N Q+V ++   N++K+AE  ERQAR+LKA LHPLK+KFVFWYTRRT
Sbjct: 1   MEITEKKEAESKGLNPQSVTEATSFNSDKEAEDRERQARDLKAGLHPLKHKFVFWYTRRT 60

Query: 56  PGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSAN 115
           PGVRTQTSYEDNIKKIVDFSTVEGFW+CYCHLARPS LPSPTDLHLFKEGIRPLWEDSAN
Sbjct: 61  PGVRTQTSYEDNIKKIVDFSTVEGFWICYCHLARPSALPSPTDLHLFKEGIRPLWEDSAN 120

Query: 116 CNGGKWIIRFKKVVSGRFWEDLV 138
           CNGGKWIIRFKKVVSGRFWEDLV
Sbjct: 121 CNGGKWIIRFKKVVSGRFWEDLV 143

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356498848|ref|XP_003518260.1| PREDICTED: eukaryotic translation initiation factor 4E type 3-like [Glycine max]

 Score =  241 bits (616), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 109/128 (85%), Positives = 121/128 (94%)

Query: 11  INNTQTVADSVDNNNKDAEERQARELKANLHPLKNKFVFWYTRRTPGVRTQTSYEDNIKK 70
           ++++  +A ++D+NNK+ EERQARELKA LHPLK+KFVFWYTRRTPGVR QTSYEDNIKK
Sbjct: 22  LDSSSQLASALDSNNKEIEERQARELKAGLHPLKHKFVFWYTRRTPGVRNQTSYEDNIKK 81

Query: 71  IVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKKVVS 130
           IV+FSTVEGFWVCYCHLARP+ LPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKKVVS
Sbjct: 82  IVEFSTVEGFWVCYCHLARPASLPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKKVVS 141

Query: 131 GRFWEDLV 138
           GRFWEDLV
Sbjct: 142 GRFWEDLV 149

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351721708|ref|NP_001235427.1| uncharacterized protein LOC100499744 [Glycine max] gi|255626233|gb|ACU13461.1| unknown [Glycine max]

 Score =  240 bits (612), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 108/128 (84%), Positives = 121/128 (94%)

Query: 11  INNTQTVADSVDNNNKDAEERQARELKANLHPLKNKFVFWYTRRTPGVRTQTSYEDNIKK 70
           ++++  +A ++D++NK+ EERQARELKA LHPLK+KFVFWYTRRTPGVR QTSYEDNIKK
Sbjct: 22  LDSSSQLASALDSSNKEIEERQARELKAGLHPLKHKFVFWYTRRTPGVRNQTSYEDNIKK 81

Query: 71  IVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKKVVS 130
           IV+FSTVEGFWVCYCHLARP+ LPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKKVVS
Sbjct: 82  IVEFSTVEGFWVCYCHLARPASLPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKKVVS 141

Query: 131 GRFWEDLV 138
           GRFWEDLV
Sbjct: 142 GRFWEDLV 149

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255630990|gb|ACU15859.1| unknown [Glycine max]

 Score =  239 bits (611), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 108/128 (84%), Positives = 120/128 (93%)

Query: 11  INNTQTVADSVDNNNKDAEERQARELKANLHPLKNKFVFWYTRRTPGVRTQTSYEDNIKK 70
           ++++  +A ++D+NNK+ EERQARELKA LHPLK+KFVFWYTRRTPGVR QTSYEDNIKK
Sbjct: 22  LDSSSQLASALDSNNKEIEERQARELKAGLHPLKHKFVFWYTRRTPGVRNQTSYEDNIKK 81

Query: 71  IVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKKVVS 130
           IV+FSTVEGFWVCYCHLARP+ LPSPTDLHLFKEGIRPLWEDS NCNGGKWIIRFKKVVS
Sbjct: 82  IVEFSTVEGFWVCYCHLARPASLPSPTDLHLFKEGIRPLWEDSTNCNGGKWIIRFKKVVS 141

Query: 131 GRFWEDLV 138
           GRFWEDLV
Sbjct: 142 GRFWEDLV 149

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|156153162|gb|ABU54819.1| cap-binding protein-like protein [Phaseolus vulgaris] gi|156153164|gb|ABU54820.1| cap-binding protein-like protein [Phaseolus vulgaris] gi|156153166|gb|ABU54821.1| cap-binding protein-like protein [Phaseolus vulgaris] gi|156153168|gb|ABU54822.1| cap-binding protein-like protein [Phaseolus vulgaris] gi|156153172|gb|ABU54824.1| cap-binding protein-like protein [Phaseolus vulgaris] gi|156153174|gb|ABU54825.1| cap-binding protein-like protein [Phaseolus vulgaris]

 Score =  238 bits (607), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 106/128 (82%), Positives = 120/128 (93%)

Query: 11  INNTQTVADSVDNNNKDAEERQARELKANLHPLKNKFVFWYTRRTPGVRTQTSYEDNIKK 70
           ++++  +A ++D+N+K+ EERQ+RELKA LHPLK+KFVFWYTRRTPGVR QTSYEDNIKK
Sbjct: 24  LDSSSQLASALDSNSKETEERQSRELKAGLHPLKHKFVFWYTRRTPGVRNQTSYEDNIKK 83

Query: 71  IVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKKVVS 130
           IV+FSTVEGFWVCYCHL RP+ LPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKKVVS
Sbjct: 84  IVEFSTVEGFWVCYCHLGRPATLPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKKVVS 143

Query: 131 GRFWEDLV 138
           GRFWEDLV
Sbjct: 144 GRFWEDLV 151

Source: Phaseolus vulgaris

Species: Phaseolus vulgaris

Genus: Phaseolus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255568896|ref|XP_002525418.1| eukaryotic translation initiation factor 4e type, putative [Ricinus communis] gi|223535231|gb|EEF36908.1| eukaryotic translation initiation factor 4e type, putative [Ricinus communis]

 Score =  238 bits (607), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 115/141 (81%), Positives = 123/141 (87%), Gaps = 4/141 (2%)

Query: 1   MEITDKKESDINNTQTVADSVDNN---NKDAEERQARELKANLHPLKNKFVFWYTRRTPG 57
           MEIT+KKE++ NN     DS  N+   +K+ EERQARELKA LHPLK+KFVFWYTRRTPG
Sbjct: 1   MEITEKKETEKNNKNNT-DSASNDLIMDKETEERQARELKAGLHPLKHKFVFWYTRRTPG 59

Query: 58  VRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCN 117
           VRTQTSYEDNIKKIV+FSTVEGFWVCYCHLAR S LPSPTDLHLFKEGIRPLWEDSAN N
Sbjct: 60  VRTQTSYEDNIKKIVEFSTVEGFWVCYCHLARSSALPSPTDLHLFKEGIRPLWEDSANSN 119

Query: 118 GGKWIIRFKKVVSGRFWEDLV 138
           GGKWIIRFKK VS RFWEDLV
Sbjct: 120 GGKWIIRFKKAVSARFWEDLV 140

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357497325|ref|XP_003618951.1| Eukaryotic translation initiation factor 4E type 3 [Medicago truncatula] gi|355493966|gb|AES75169.1| Eukaryotic translation initiation factor 4E type 3 [Medicago truncatula] gi|388491190|gb|AFK33661.1| unknown [Medicago truncatula]

 Score =  222 bits (565), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 105/126 (83%), Positives = 112/126 (88%), Gaps = 2/126 (1%)

Query: 14  TQTVADSVDNNN-KDAEERQARELKANLHPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIV 72
           T  + DS D+ N K+ EERQ+RELKA LHPLK+KFVFWYTRR PG+R Q SYEDNIKKIV
Sbjct: 20  THQIVDSSDSYNVKETEERQSRELKAGLHPLKSKFVFWYTRRVPGIRNQ-SYEDNIKKIV 78

Query: 73  DFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKKVVSGR 132
           +FSTVEGFWVCYCHLARPS LP PTDLHLFKEGIRPLWEDSANCNGGKWIIRFKK VSGR
Sbjct: 79  EFSTVEGFWVCYCHLARPSSLPIPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKKAVSGR 138

Query: 133 FWEDLV 138
           FWEDLV
Sbjct: 139 FWEDLV 144

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449446752|ref|XP_004141135.1| PREDICTED: eukaryotic translation initiation factor 4E type 3-like [Cucumis sativus]

 Score =  220 bits (560), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 107/137 (78%), Positives = 115/137 (83%), Gaps = 10/137 (7%)

Query: 12  NNTQTVADSV-------DNNNKDAEE---RQARELKANLHPLKNKFVFWYTRRTPGVRTQ 61
           N+ Q + DS        D N K+AEE   R AR+LK  LHPLK+KF FWYTRRTPGVRTQ
Sbjct: 20  NSAQPLLDSSFQPSLADDTNAKEAEELSERIARDLKDGLHPLKHKFAFWYTRRTPGVRTQ 79

Query: 62  TSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGKW 121
           TSYEDNIKKIVDFS+VEGFW+ YCHLARP+ LPSPTDLHLFKEGIRPLWEDSANCNGGKW
Sbjct: 80  TSYEDNIKKIVDFSSVEGFWISYCHLARPASLPSPTDLHLFKEGIRPLWEDSANCNGGKW 139

Query: 122 IIRFKKVVSGRFWEDLV 138
           IIRFKKVVSGRFWEDLV
Sbjct: 140 IIRFKKVVSGRFWEDLV 156

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449509545|ref|XP_004163619.1| PREDICTED: eukaryotic translation initiation factor 4E type 3-like, partial [Cucumis sativus]

 Score =  218 bits (554), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 106/136 (77%), Positives = 114/136 (83%), Gaps = 10/136 (7%)

Query: 12  NNTQTVADSV-------DNNNKDAEE---RQARELKANLHPLKNKFVFWYTRRTPGVRTQ 61
           N+ Q + DS        D N K+AEE   R AR+LK  LHPLK+KF FWYTRRTPGVRTQ
Sbjct: 20  NSAQPLLDSSFQPSLADDTNAKEAEELSERIARDLKDGLHPLKHKFAFWYTRRTPGVRTQ 79

Query: 62  TSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGKW 121
           TSYEDNIKKIVDFS+VEGFW+ YCHLARP+ LPSPTDLHLFKEGIRPLWEDSANCNGGKW
Sbjct: 80  TSYEDNIKKIVDFSSVEGFWISYCHLARPASLPSPTDLHLFKEGIRPLWEDSANCNGGKW 139

Query: 122 IIRFKKVVSGRFWEDL 137
           IIRFKKVVSGRFWEDL
Sbjct: 140 IIRFKKVVSGRFWEDL 155

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	164
TAIR|locus:2172339	221	NCBP "novel cap-binding protei	0.829	0.615	0.673	9.5e-50
UNIPROTKB|B8ZZ50	236	EIF4E2 "Eukaryotic translation	0.817	0.567	0.456	2.3e-31
UNIPROTKB|B8ZZJ9	234	EIF4E2 "Eukaryotic translation	0.817	0.572	0.456	2.3e-31
UNIPROTKB|B9A044	233	EIF4E2 "Eukaryotic translation	0.817	0.575	0.456	2.3e-31
UNIPROTKB|C9JEL3	213	EIF4E2 "Eukaryotic translation	0.817	0.629	0.456	2.3e-31
UNIPROTKB|O60573	245	EIF4E2 "Eukaryotic translation	0.817	0.546	0.456	2.3e-31
MGI|MGI:1914440	245	Eif4e2 "eukaryotic translation	0.804	0.538	0.45	3.8e-31
UNIPROTKB|Q0II31	236	EIF4E2 "Eukaryotic translation	0.804	0.559	0.45	4.8e-31
UNIPROTKB|F1SMT1	245	EIF4E2 "Uncharacterized protei	0.804	0.538	0.45	4.8e-31
UNIPROTKB|F1Q1E8	227	F1Q1E8 "Uncharacterized protei	0.804	0.581	0.45	6.1e-31

TAIR|locus:2172339 NCBP "novel cap-binding protein" [Arabidopsis thaliana (taxid:3702)]

 Score = 518 (187.4 bits), Expect = 9.5e-50, P = 9.5e-50
 Identities = 95/141 (67%), Positives = 115/141 (81%)

Query:     1 MEITDKKESDINNTQTVADSVDNN---NKDAEERQARELKANLHPLKNKFVFWYTRRTPG 57
             ME+ D+++ +I ++  + DS+ ++   +  +EER++RELK   HPL+ KF  WYTRRTPG
Sbjct:     1 MEVLDRRDDEIRDSGNM-DSIKSHYVTDSVSEERRSRELKDGDHPLRYKFSIWYTRRTPG 59

Query:    58 VRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCN 117
             VR Q SYEDNIKK+V+FSTVEGFW CYCHLAR SLLPSPTDLH FK+GIRPLWED ANCN
Sbjct:    60 VRNQ-SYEDNIKKMVEFSTVEGFWACYCHLARSSLLPSPTDLHFFKDGIRPLWEDGANCN 118

Query:   118 GGKWIIRFKKVVSGRFWEDLV 138
             GGKWIIRF KVVS RFWEDL+
Sbjct:   119 GGKWIIRFSKVVSARFWEDLL 139

GO:0003723 "RNA binding" evidence=IEA;ISS

GO:0003743 "translation initiation factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0005737 "cytoplasm" evidence=IEA;ISS

GO:0006413 "translational initiation" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=IDA

UNIPROTKB|B8ZZ50 EIF4E2 "Eukaryotic translation initiation factor 4E type 2" [Homo sapiens (taxid:9606)]

 Score = 324 (119.1 bits), Expect = 2.3e-31, Sum P(2) = 2.3e-31
 Identities = 63/138 (45%), Positives = 89/138 (64%)

Query:     5 DKKESDINNTQTVADSVD---NNNKDAEERQARELKANLHPLKNKFVFWYTRRTPGVRTQ 61
             D  +++ N+TQ   +      + N+ + +R+A       HPL+  + FWY+RRTPG  T 
Sbjct:    15 DHDQNEENSTQKDGEKEKTERDKNQSSSKRKAVVPGPAEHPLQYNYTFWYSRRTPGRPTS 74

Query:    62 T-SYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGK 120
             + SYE NIK+I  F++VE FW  Y H+ RP  L   +D HLFKEGI+P+WED AN NGGK
Sbjct:    75 SQSYEQNIKQIGTFASVEQFWRFYSHMVRPGDLTGHSDFHLFKEGIKPMWEDDANKNGGK 134

Query:   121 WIIRFKKVVSGRFWEDLV 138
             WIIR +K ++ R WE+L+
Sbjct:   135 WIIRLRKGLASRCWENLI 152

GO:0005737 "cytoplasm" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

UNIPROTKB|B8ZZJ9 EIF4E2 "Eukaryotic translation initiation factor 4E member 2, isoform CRA_b" [Homo sapiens (taxid:9606)]

 Score = 324 (119.1 bits), Expect = 2.3e-31, Sum P(2) = 2.3e-31
 Identities = 63/138 (45%), Positives = 89/138 (64%)

Query:     5 DKKESDINNTQTVADSVD---NNNKDAEERQARELKANLHPLKNKFVFWYTRRTPGVRTQ 61
             D  +++ N+TQ   +      + N+ + +R+A       HPL+  + FWY+RRTPG  T 
Sbjct:    15 DHDQNEENSTQKDGEKEKTERDKNQSSSKRKAVVPGPAEHPLQYNYTFWYSRRTPGRPTS 74

Query:    62 T-SYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGK 120
             + SYE NIK+I  F++VE FW  Y H+ RP  L   +D HLFKEGI+P+WED AN NGGK
Sbjct:    75 SQSYEQNIKQIGTFASVEQFWRFYSHMVRPGDLTGHSDFHLFKEGIKPMWEDDANKNGGK 134

Query:   121 WIIRFKKVVSGRFWEDLV 138
             WIIR +K ++ R WE+L+
Sbjct:   135 WIIRLRKGLASRCWENLI 152

GO:0005737 "cytoplasm" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

UNIPROTKB|B9A044 EIF4E2 "Eukaryotic translation initiation factor 4E type 2" [Homo sapiens (taxid:9606)]

 Score = 324 (119.1 bits), Expect = 2.3e-31, Sum P(2) = 2.3e-31
 Identities = 63/138 (45%), Positives = 89/138 (64%)

Query:     5 DKKESDINNTQTVADSVD---NNNKDAEERQARELKANLHPLKNKFVFWYTRRTPGVRTQ 61
             D  +++ N+TQ   +      + N+ + +R+A       HPL+  + FWY+RRTPG  T 
Sbjct:    15 DHDQNEENSTQKDGEKEKTERDKNQSSSKRKAVVPGPAEHPLQYNYTFWYSRRTPGRPTS 74

Query:    62 T-SYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGK 120
             + SYE NIK+I  F++VE FW  Y H+ RP  L   +D HLFKEGI+P+WED AN NGGK
Sbjct:    75 SQSYEQNIKQIGTFASVEQFWRFYSHMVRPGDLTGHSDFHLFKEGIKPMWEDDANKNGGK 134

Query:   121 WIIRFKKVVSGRFWEDLV 138
             WIIR +K ++ R WE+L+
Sbjct:   135 WIIRLRKGLASRCWENLI 152

GO:0005737 "cytoplasm" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

UNIPROTKB|C9JEL3 EIF4E2 "Eukaryotic translation initiation factor 4E type 2" [Homo sapiens (taxid:9606)]

 Score = 324 (119.1 bits), Expect = 2.3e-31, Sum P(2) = 2.3e-31
 Identities = 63/138 (45%), Positives = 89/138 (64%)

Query:     5 DKKESDINNTQTVADSVD---NNNKDAEERQARELKANLHPLKNKFVFWYTRRTPGVRTQ 61
             D  +++ N+TQ   +      + N+ + +R+A       HPL+  + FWY+RRTPG  T 
Sbjct:    10 DHDQNEENSTQKDGEKEKTERDKNQSSSKRKAVVPGPAEHPLQYNYTFWYSRRTPGRPTS 69

Query:    62 T-SYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGK 120
             + SYE NIK+I  F++VE FW  Y H+ RP  L   +D HLFKEGI+P+WED AN NGGK
Sbjct:    70 SQSYEQNIKQIGTFASVEQFWRFYSHMVRPGDLTGHSDFHLFKEGIKPMWEDDANKNGGK 129

Query:   121 WIIRFKKVVSGRFWEDLV 138
             WIIR +K ++ R WE+L+
Sbjct:   130 WIIRLRKGLASRCWENLI 147

GO:0005737 "cytoplasm" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

UNIPROTKB|O60573 EIF4E2 "Eukaryotic translation initiation factor 4E type 2" [Homo sapiens (taxid:9606)]

 Score = 324 (119.1 bits), Expect = 2.3e-31, Sum P(2) = 2.3e-31
 Identities = 63/138 (45%), Positives = 89/138 (64%)

Query:     5 DKKESDINNTQTVADSVD---NNNKDAEERQARELKANLHPLKNKFVFWYTRRTPGVRTQ 61
             D  +++ N+TQ   +      + N+ + +R+A       HPL+  + FWY+RRTPG  T 
Sbjct:    15 DHDQNEENSTQKDGEKEKTERDKNQSSSKRKAVVPGPAEHPLQYNYTFWYSRRTPGRPTS 74

Query:    62 T-SYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGK 120
             + SYE NIK+I  F++VE FW  Y H+ RP  L   +D HLFKEGI+P+WED AN NGGK
Sbjct:    75 SQSYEQNIKQIGTFASVEQFWRFYSHMVRPGDLTGHSDFHLFKEGIKPMWEDDANKNGGK 134

Query:   121 WIIRFKKVVSGRFWEDLV 138
             WIIR +K ++ R WE+L+
Sbjct:   135 WIIRLRKGLASRCWENLI 152

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0005845 "mRNA cap binding complex" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0000339 "RNA cap binding" evidence=TAS

GO:0031625 "ubiquitin protein ligase binding" evidence=IPI

GO:0008135 "translation factor activity, nucleic acid binding" evidence=TAS

GO:0017148 "negative regulation of translation" evidence=IMP

GO:0005829 "cytosol" evidence=TAS

GO:0019221 "cytokine-mediated signaling pathway" evidence=TAS

MGI|MGI:1914440 Eif4e2 "eukaryotic translation initiation factor 4E member 2" [Mus musculus (taxid:10090)]

 Score = 322 (118.4 bits), Expect = 3.8e-31, Sum P(2) = 3.8e-31
 Identities = 63/140 (45%), Positives = 90/140 (64%)

Query:     5 DKKESDINNTQTVADSVDNNNKDAEERQARELKANL-----HPLKNKFVFWYTRRTPGVR 59
             D  +++ N+TQ   +  +  ++D  +   +  KA +     HPL+  + FWY+RRTPG  
Sbjct:    15 DHDQNEENSTQKDGEK-EKTDRDKSQSSGKR-KAVVPGPAEHPLQYNYTFWYSRRTPGRP 72

Query:    60 TQT-SYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNG 118
             T + SYE NIK+I  F++VE FW  Y H+ RP  L   +D HLFKEGI+P+WED AN NG
Sbjct:    73 TSSQSYEQNIKQIGTFASVEQFWKFYSHMVRPGDLTGHSDFHLFKEGIKPMWEDDANKNG 132

Query:   119 GKWIIRFKKVVSGRFWEDLV 138
             GKWIIR +K ++ R WE+L+
Sbjct:   133 GKWIIRLRKGLASRCWENLI 152

GO:0001701 "in utero embryonic development" evidence=IMP

GO:0003723 "RNA binding" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005845 "mRNA cap binding complex" evidence=ISO

GO:0006412 "translation" evidence=IEA

GO:0006413 "translational initiation" evidence=IEA

GO:0006417 "regulation of translation" evidence=IEA

GO:0017148 "negative regulation of translation" evidence=ISO

GO:0031625 "ubiquitin protein ligase binding" evidence=ISO

UNIPROTKB|Q0II31 EIF4E2 "Eukaryotic translation initiation factor 4E family member 2" [Bos taurus (taxid:9913)]

 Score = 321 (118.1 bits), Expect = 4.8e-31, Sum P(2) = 4.8e-31
 Identities = 63/140 (45%), Positives = 90/140 (64%)

Query:     5 DKKESDINNTQTVADSVDNNNKDAEERQARELKANL-----HPLKNKFVFWYTRRTPGVR 59
             D  +++ N+TQ   +  +   +D  +  ++  KA +     HPL+  + FWY+RRTPG  
Sbjct:    15 DHDQNEENSTQKDGEK-EKTERDKSQSSSKR-KAVVPGPAEHPLQYNYTFWYSRRTPGRP 72

Query:    60 TQT-SYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNG 118
             T + SYE NIK+I  F++VE FW  Y H+ RP  L   +D HLFKEGI+P+WED AN NG
Sbjct:    73 TSSQSYEQNIKQIGTFASVEQFWRFYSHMVRPGDLTGHSDFHLFKEGIKPMWEDDANKNG 132

Query:   119 GKWIIRFKKVVSGRFWEDLV 138
             GKWIIR +K ++ R WE+L+
Sbjct:   133 GKWIIRLRKGLASRCWENLI 152

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0005845 "mRNA cap binding complex" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|F1SMT1 EIF4E2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 321 (118.1 bits), Expect = 4.8e-31, Sum P(2) = 4.8e-31
 Identities = 63/140 (45%), Positives = 90/140 (64%)

Query:     5 DKKESDINNTQTVADSVDNNNKDAEERQARELKANL-----HPLKNKFVFWYTRRTPGVR 59
             D  +++ N+TQ   +  +   +D  +  ++  KA +     HPL+  + FWY+RRTPG  
Sbjct:    15 DHDQNEENSTQKDGEK-EKTERDKSQSSSKR-KAVVPGPAEHPLQYNYTFWYSRRTPGRP 72

Query:    60 TQT-SYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNG 118
             T + SYE NIK+I  F++VE FW  Y H+ RP  L   +D HLFKEGI+P+WED AN NG
Sbjct:    73 TSSQSYEQNIKQIGTFASVEQFWRFYSHMVRPGDLTGHSDFHLFKEGIKPMWEDDANKNG 132

Query:   119 GKWIIRFKKVVSGRFWEDLV 138
             GKWIIR +K ++ R WE+L+
Sbjct:   133 GKWIIRLRKGLASRCWENLI 152

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0005845 "mRNA cap binding complex" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|F1Q1E8 F1Q1E8 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 320 (117.7 bits), Expect = 6.1e-31, Sum P(2) = 6.1e-31
 Identities = 63/140 (45%), Positives = 90/140 (64%)

Query:     5 DKKESDINNTQTVADSVDNNNKDAEERQARELKANL-----HPLKNKFVFWYTRRTPGVR 59
             D  +++ N+TQ   +  +   +D  +  ++  KA +     HPL+  + FWY+RRTPG  
Sbjct:     9 DHDQNEENSTQKDGEK-EKTERDKSQGSSKR-KAVVPGPAEHPLQYNYTFWYSRRTPGRP 66

Query:    60 TQT-SYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNG 118
             T + SYE NIK+I  F++VE FW  Y H+ RP  L   +D HLFKEGI+P+WED AN NG
Sbjct:    67 TSSQSYEQNIKQIGTFASVEQFWRFYSHMVRPGDLTGHSDFHLFKEGIKPMWEDDANKNG 126

Query:   119 GKWIIRFKKVVSGRFWEDLV 138
             GKWIIR +K ++ R WE+L+
Sbjct:   127 GKWIIRLRKGLASRCWENLI 146

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FK59	IF4E5_ARATH	No assigned EC number	0.6737	0.8292	0.6153	yes	no
Q10NQ9	IF4E3_ORYSJ	No assigned EC number	0.8349	0.6219	0.4493	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_kg.C_LG_XIII0028	hypothetical protein (226 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	grail3.0040005401	SubName- Full=Putative uncharacterized protein; (1166 aa)						•	•		0.821
	estExt_fgenesh4_pm.C_LG_XVIII0340	hypothetical protein (793 aa)						•	•		0.815
	eugene3.00061309	hypothetical protein (798 aa)						•	•		0.815

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	164
pfam01652	162	pfam01652, IF4E, Eukaryotic initiation factor 4E	1e-44
COG5053	217	COG5053, CDC33, Translation initiation factor 4E (	2e-23
PTZ00040	233	PTZ00040, PTZ00040, translation initiation factor	6e-12

>gnl|CDD|216628 pfam01652, IF4E, Eukaryotic initiation factor 4E

 Score =  144 bits (365), Expect = 1e-44
 Identities = 54/98 (55%), Positives = 65/98 (66%), Gaps = 2/98 (2%)

Query: 42  PLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHL 101
           PL+NK+  WY RR PG      YEDN+K I  F TVE FW  Y ++ RPS LP  +D HL
Sbjct: 1   PLQNKWTLWYDRRPPG-DKSKDYEDNLKPIGTFDTVEDFWRLYNNIPRPSKLPLGSDYHL 59

Query: 102 FKEGIRPLWEDSANCNGGKWIIRFKK-VVSGRFWEDLV 138
           FK+GI+P+WED AN NGGKW IR  K     RFWE+L+
Sbjct: 60  FKKGIKPMWEDPANKNGGKWTIRLPKSQNLDRFWEELL 97

Length = 162

>gnl|CDD|227386 COG5053, CDC33, Translation initiation factor 4E (eIF-4E) [Translation, ribosomal structure and biogenesis]

 Score = 91.5 bits (227), Expect = 2e-23
 Identities = 42/105 (40%), Positives = 57/105 (54%), Gaps = 2/105 (1%)

Query: 39  NLHPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTD 98
           N HPL   +  W+ +  P      S+ D +K I+ F TVE FW    +++  S LP  +D
Sbjct: 35  NKHPLAFHWTLWFLK--PPEDGLESWSDLLKSIITFETVEEFWYILHNISDASRLPRKSD 92

Query: 99  LHLFKEGIRPLWEDSANCNGGKWIIRFKKVVSGRFWEDLVRRRLA 143
            ++F+EGIRP WED AN NGGKW  + K     R  E  +R  LA
Sbjct: 93  YNVFREGIRPEWEDEANMNGGKWSFQLKGKGCDRLDELWLRTLLA 137

Length = 217

>gnl|CDD|240238 PTZ00040, PTZ00040, translation initiation factor E4; Provisional

 Score = 61.0 bits (148), Expect = 6e-12
 Identities = 35/117 (29%), Positives = 56/117 (47%), Gaps = 20/117 (17%)

Query: 42  PLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPS------ 95
           PL  K+V W       +R    Y+D  K +  F +V+ FW  + ++ +PS L +      
Sbjct: 39  PLSYKWVIWEQVVKETIRKSNDYKDYTKPLASFDSVQKFWQLWFNIPQPSELLTGKRMIR 98

Query: 96  -PTD--------LHLFKEGIRPLWEDSANCNGGKWIIRFK--KVVSGR---FWEDLV 138
             +D        + +FK+GI+P+WED  N  GG +  RF    V  G+   +W +LV
Sbjct: 99  ESSDGSEHVVDAVMIFKDGIQPMWEDPMNATGGHFEYRFWPTDVSPGQIDEYWNNLV 155

Length = 233

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	164
KOG1670	212	consensus Translation initiation factor 4F, cap-bi	100.0
PTZ00040	233	translation initiation factor E4; Provisional	100.0
PF01652	165	IF4E: Eukaryotic initiation factor 4E; InterPro: I	100.0
KOG1669	208	consensus Predicted mRNA cap-binding protein relat	100.0
COG5053	217	CDC33 Translation initiation factor 4E (eIF-4E) [T	100.0

>KOG1670 consensus Translation initiation factor 4F, cap-binding subunit (eIF-4E) and related cap-binding proteins [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=4.2e-48  Score=314.58  Aligned_cols=117  Identities=35%  Similarity=0.692  Sum_probs=110.9

Q ss_pred             CCCCCCCceEEEEEcCCCCCCCccchHhhcceeeeecchhhHHHhhcCCCCCCCCCCCceeEEeeCCCccccccCCCCCC
Q 031207           39 NLHPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNG  118 (164)
Q Consensus        39 ~~h~L~~~WtfW~~~~~~~~~~~~~y~~~l~~I~tf~TVE~FW~~y~~l~~ps~L~~~~~~~lFK~GI~P~WEDp~N~nG  118 (164)
                      ..|||++.|||||..+..   + ..|++.|++|++|+|||+||++|++|++||+|+.+|||+|||+||+||||||+|++|
T Consensus        33 ~~hpL~~~WTlW~l~~d~---~-ksW~d~Lk~v~tF~TVeeFW~Ly~~I~~ps~L~~~sDy~lFk~gI~PmWED~~N~~G  108 (212)
T KOG1670|consen   33 IKHPLQNNWTLWFLKNDR---N-KSWEDMLKEVTTFDTVEEFWSLYNNIKPPSGLNRGSDYSLFKKGIRPMWEDPANKNG  108 (212)
T ss_pred             cccccccceeEEeecCCc---c-ccHHHHhhhccccccHHHHHHHHhccCChhhCCccccHHHHhcCCCccccCccccCC
Confidence            589999999999998764   2 389999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEEEcC---CchHHHHHHHHHHHhcCCC-CCCCeeEEEEEeE
Q 031207          119 GKWIIRFKK---VVSGRFWEDLVRRRLATAS-PPKHICILQQLSI  159 (164)
Q Consensus       119 Gkw~i~~~k---~~~d~~We~lll~~IGe~f-~~d~I~Gvvvs~~  159 (164)
                      |||.|.+++   ...|++|.++||+||||+| ++++|||+|+.+|
T Consensus       109 GrW~~~~~k~~k~~lD~~WL~tLlalIGE~fd~~deICGaV~NiR  153 (212)
T KOG1670|consen  109 GRWLITVPKSGKAELDELWLETLLALIGEQFDHSDEICGAVVNIR  153 (212)
T ss_pred             CeEEEEecCcchhhHHHHHHHHHHHHHhhhccccccceeEEEEec
Confidence            999999985   4689999999999999999 8999999999998

>PTZ00040 translation initiation factor E4; Provisional

Probab=100.00  E-value=4.5e-45  Score=303.00  Aligned_cols=120  Identities=28%  Similarity=0.584  Sum_probs=108.3

Q ss_pred             CCCCCCCCceEEEEEcCCCCCCCccchHhhcceeeeecchhhHHHhhcCCCCCCCCCCCce---------------eEEe
Q 031207           38 ANLHPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTD---------------LHLF  102 (164)
Q Consensus        38 ~~~h~L~~~WtfW~~~~~~~~~~~~~y~~~l~~I~tf~TVE~FW~~y~~l~~ps~L~~~~~---------------~~lF  102 (164)
                      ..+|||+++|||||+.+..+.....+|+++|++|++|+|||+||++|+||++||+|+.+++               ||||
T Consensus        35 ~~~hpL~~~Wt~W~~~~~~~~~~~~~y~~~lk~I~sF~TVEeFW~~yn~i~~pS~L~~~~~~~r~~~~~~~~~~~~~~lF  114 (233)
T PTZ00040         35 STPLPLSYKWVIWEQVVKETIRKSNDYKDYTKPLASFDSVQKFWQLWFNIPQPSELLTGKRMIRESSDGSEHVVDAVMIF  114 (233)
T ss_pred             CCCCcCCCcEEEEEEcCcccCcchhhHHHhceEEeEEccHHHHHHHHhCCCChHHcccccccccccccccccccceeeee
Confidence            5679999999999997654323345899999999999999999999999999999998874               9999


Q ss_pred             eCCCccccccCCCCCCceEEEEEcC-----CchHHHHHHHHHHHhcCCC-CCCCeeEEEEE
Q 031207          103 KEGIRPLWEDSANCNGGKWIIRFKK-----VVSGRFWEDLVRRRLATAS-PPKHICILQQL  157 (164)
Q Consensus       103 K~GI~P~WEDp~N~nGGkw~i~~~k-----~~~d~~We~lll~~IGe~f-~~d~I~Gvvvs  157 (164)
                      |+||+||||||+|++||+|++++++     ..++++|++|||++|||+| ..++||||||+
T Consensus       115 K~GIkP~WEDp~N~~GG~w~~~~~~~~~~~~~~d~~W~~llLa~IGe~~~~~d~I~Gvvv~  175 (233)
T PTZ00040        115 KDGIQPMWEDPMNATGGHFEYRFWPTDVSPGQIDEYWNNLVLALIGSSLEHSSLINGIRLV  175 (233)
T ss_pred             cCCCeECcCCCCcCCCCEEEEEeccccccccHHHHHHHHHHHHHhcCcCCCCcccccEEEe
Confidence            9999999999999999999999965     3589999999999999999 78999999974

>PF01652 IF4E: Eukaryotic initiation factor 4E; InterPro: IPR001040 Eukaryotic translation initiation factor 4E (eIF-4E) [] is a protein that binds to the cap structure of eukaryotic cellular mRNAs

Probab=100.00  E-value=6.4e-44  Score=280.21  Aligned_cols=118  Identities=43%  Similarity=0.859  Sum_probs=107.7

Q ss_pred             CCCCceEEEEEcCCCCCCCccchHhhcceeeeecchhhHHHhhcCCCCCCCCCCCceeEEeeCCCccccccCCCCCCceE
Q 031207           42 PLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGKW  121 (164)
Q Consensus        42 ~L~~~WtfW~~~~~~~~~~~~~y~~~l~~I~tf~TVE~FW~~y~~l~~ps~L~~~~~~~lFK~GI~P~WEDp~N~nGGkw  121 (164)
                      ||+++|||||+......+ ..+|.++|++|++|+|||+||++|++|++|++|+.+++|+|||+||+||||||+|++||+|
T Consensus         1 pL~~~Wt~w~~~~~~~~~-~~~y~~~l~~i~~f~TvE~Fw~~~~~i~~~s~l~~~~~~~lFk~gI~P~WEDp~N~~GG~~   79 (165)
T PF01652_consen    1 PLQNKWTFWYDKKQKNSK-SDDYEDSLKPIGTFSTVEEFWSLYNHIPKPSELPKGSNYHLFKKGIKPMWEDPANKNGGRW   79 (165)
T ss_dssp             EEEEEEEEEEEECCCCCT-TSCTGGGEEEEEEEEEHHHHHHHHTTSCCGGGS-TTEEEEEEETTC-SSTTSTTTTTSEEE
T ss_pred             CcCCEEEEEEEecCCCCc-hhhhhhhceEEEEEEeHHHHHHHhccCCCHHHCCCCcceeeeecccccCCCCccCCCccEE
Confidence            799999999995544333 3599999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEcCC---chHHHHHHHHHHHhcCCC-CC-CCeeEEEEEeEe
Q 031207          122 IIRFKKV---VSGRFWEDLVRRRLATAS-PP-KHICILQQLSIF  160 (164)
Q Consensus       122 ~i~~~k~---~~d~~We~lll~~IGe~f-~~-d~I~Gvvvs~~~  160 (164)
                      +|++++.   .++++|++|||++|||+| .. ++|||||+++|.
T Consensus        80 ~i~~~~~~~~~~~~~W~~lll~~IGe~~~~~~~~I~Gi~~s~r~  123 (165)
T PF01652_consen   80 IIRIKKKNKEQVDEIWENLLLAVIGEQFDEDGDEICGIVLSVRK  123 (165)
T ss_dssp             EEEEETTCHHTHHHHHHHHHHHHHTTTSCCGGGGEEEEEEEEES
T ss_pred             EEEEcCccchhHHHHHHHHHHHHhhcccccCCCcceEEEEEEec
Confidence            9999998   999999999999999999 33 899999999994

eIF-4E recognises and binds the 7-methylguanosine-containing (m7Gppp) cap during an early step in the initiation of protein synthesis and facilitates ribosome binding to a mRNA by inducing the unwinding of its secondary structures. A tryptophan in the central part of the sequence of human eIF-4E seems to be implicated in cap-binding [].; GO: 0003723 RNA binding, 0003743 translation initiation factor activity, 0006413 translational initiation, 0005737 cytoplasm; PDB: 2JGB_A 2JGC_A 1L8B_A 1EJ1_A 1EJH_A 1EJ4_A 1AP8_A 1RF8_A 2WMC_G 2IDR_B ....

>KOG1669 consensus Predicted mRNA cap-binding protein related to eIF-4E [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=2.4e-44  Score=286.76  Aligned_cols=130  Identities=50%  Similarity=0.904  Sum_probs=123.3

Q ss_pred             HhhcccCCCCCCCCceEEEEEcCCCCCCCccchHhhcceeeeecchhhHHHhhcCCCCCCCCCCCceeEEeeCCCccccc
Q 031207           32 QARELKANLHPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWE  111 (164)
Q Consensus        32 ~~~~~~~~~h~L~~~WtfW~~~~~~~~~~~~~y~~~l~~I~tf~TVE~FW~~y~~l~~ps~L~~~~~~~lFK~GI~P~WE  111 (164)
                      .++....+.|||++..+|||..+.++... ++|++.+++|++|.|||+||++|.||++|+.|+..+++||||+||+|+||
T Consensus        21 ~a~v~~d~dh~l~y~~t~~y~~r~~Gv~~-qsYe~~ik~i~t~~SvE~fw~~~~Hlkr~~~m~~~~dih~FKeGIkPvWE   99 (208)
T KOG1669|consen   21 RARVLMDMDHPLQYVYTFWYERRTPGVSK-QSYEKNIKSIGTFESVEQFWYLYHHLKRPDRMDRQFDIHFFKEGIKPVWE   99 (208)
T ss_pred             ccccCCCCCCcceEEEEEEEEecCCCCCh-hhHHHHhHhheeeeeHHHHHHHHHHhcCccccCCceeehhhhccCccccc
Confidence            34556677899999999999999988764 59999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCceEEEEEcCCchHHHHHHHHHHHhcCCC-CCCCeeEEEEEeEeee
Q 031207          112 DSANCNGGKWIIRFKKVVSGRFWEDLVRRRLATAS-PPKHICILQQLSIFHK  162 (164)
Q Consensus       112 Dp~N~nGGkw~i~~~k~~~d~~We~lll~~IGe~f-~~d~I~Gvvvs~~~~~  162 (164)
                      |++|.|||+|+|+++|+++.++||+||||++||+| .+++|||+|+|+||++
T Consensus       100 D~aN~nGgkWiirlkK~vs~R~wE~LLlal~geqf~~~e~icGaV~svr~ne  151 (208)
T KOG1669|consen  100 DKANCNGGKWIIRLKKGVSQRYWENLLLALCGEQFKVGEEICGAVGSVRFNE  151 (208)
T ss_pred             CcCCCCCCeEEEEehHHHHHHHHHHHHHHHHhhhhcccccccceeEEEeccc
Confidence            99999999999999999999999999999999999 8999999999999975

>COG5053 CDC33 Translation initiation factor 4E (eIF-4E) [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=3.9e-35  Score=236.32  Aligned_cols=119  Identities=32%  Similarity=0.603  Sum_probs=109.0

Q ss_pred             CCCCCCCceEEEEEcCCCCCCCccchHhhcceeeeecchhhHHHhhcCCCCCCCCCCCceeEEeeCCCccccccCCCCCC
Q 031207           39 NLHPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNG  118 (164)
Q Consensus        39 ~~h~L~~~WtfW~~~~~~~~~~~~~y~~~l~~I~tf~TVE~FW~~y~~l~~ps~L~~~~~~~lFK~GI~P~WEDp~N~nG  118 (164)
                      ..|||+..|||||..+...  +.+.|.+.|+.|++|+|||+||++.++|+.++.||..++|++||+||+|+|||++|++|
T Consensus        35 ~~hpl~~~wtlw~l~p~e~--g~esw~dlLk~I~tf~Tveefwyi~~~I~~a~~lprksdynvFreGIrPeWEDeaN~~G  112 (217)
T COG5053          35 NKHPLAFHWTLWFLKPPED--GLESWSDLLKSIITFETVEEFWYILHNISDASRLPRKSDYNVFREGIRPEWEDEANMNG  112 (217)
T ss_pred             hcCccccceEEEEecCCcc--chhHHHHHHhhheeeecHHHHHHHHhcCCcccccchhhhHHHHHcCCCccccccccCCC
Confidence            4699999999999987642  23459999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEEEcCC---chHHHHHHHHHHHhcCCC--CCCCeeEEEEEeE
Q 031207          119 GKWIIRFKKV---VSGRFWEDLVRRRLATAS--PPKHICILQQLSI  159 (164)
Q Consensus       119 Gkw~i~~~k~---~~d~~We~lll~~IGe~f--~~d~I~Gvvvs~~  159 (164)
                      |+|.+.++..   ..+++|.++||++||++|  .+.+|||||+.-|
T Consensus       113 gkws~qlk~~g~d~~dElwl~tlla~igeT~Dp~~~ei~GvV~n~r  158 (217)
T COG5053         113 GKWSFQLKGKGCDRLDELWLRTLLAAIGETLDPTGSEIGGVVGNMR  158 (217)
T ss_pred             CeEEEEcccccchhHHHHHHHHHHHHHhhccCCCCCeeccEEEEee
Confidence            9999999876   367899999999999999  5789999998765

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	164
2jgb_A	195	Structure Of Human Eif4e Homologous Protein 4ehp Wi		6e-30
1ap8_A	213	Translation Initiation Factor Eif4e In Complex With		9e-16
4axg_A	248	Structure Of Eif4e-Cup Complex Length = 248		1e-15
1rf8_A	213	Solution Structure Of The Yeast Translation Initiat		3e-15
3m93_A	189	Complex Crystal Structure Of Ascaris Suum Eif4e-3 W		1e-14
2idv_A	177	Crystal Structure Of Wheat C113s Mutant Eif4e Bound		2e-14
2w97_B	217	Crystal Structure Of Eif4e Bound To Glycerol And Ei		5e-14
2idr_A	177	Crystal Structure Of Translation Initiation Factor		5e-14
4dt6_A	240	Co-Crystal Structure Of Eif4e With Inhibitor Length		1e-13
1ipb_A	217	Crystal Structure Of Eukaryotic Initiation Factor 4		1e-13
1wkw_A	191	Crystal Structure Of The Ternary Complex Of Eif4e-M		1e-13
1ej1_A	190	Cocrystal Structure Of The Messenger Rna 5' Cap-Bin		1e-13
2wmc_A	178	Crystal Structure Of Eukaryotic Initiation Factor 4		3e-12
3hxg_A	189	Crystal Structure Of Schistsome Eif4e Complexed Wit		2e-11
4b6v_A	207	The Third Member Of The Eif4e Family Represses Gene		2e-11

>pdb|2JGB|A Chain A, Structure Of Human Eif4e Homologous Protein 4ehp With M7gtp Length = 195

Iteration: 1
 Score =  126 bits (316), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 57/104 (54%), Positives = 73/104 (70%), Gaps = 1/104 (0%)
Query: 41  HPLKNKFVFWYTRRTPGVRTQT-SYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDL 99
           HPL+  + FWY+RRTPG  T + SYE NIK+I  F++VE FW  Y H+ RP  L   +D 
Sbjct: 15  HPLQYNYTFWYSRRTPGRPTSSQSYEQNIKQIGTFASVEQFWRFYSHMVRPGDLTGHSDF 74
Query: 100 HLFKEGIRPLWEDSANCNGGKWIIRFKKVVSGRFWEDLVRRRLA 143
           HLFKEGI+P+WED AN NGGKWIIR +K ++ R WE+L+   L 
Sbjct: 75  HLFKEGIKPMWEDDANKNGGKWIIRLRKGLASRCWENLILAMLG 118

>pdb|1AP8|A Chain A, Translation Initiation Factor Eif4e In Complex With M7gdp, Nmr, 20 Structures Length = 213

Iteration: 1
 Score = 79.3 bits (194), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 34/86 (39%), Positives = 48/86 (55%), Gaps = 2/86 (2%)
Query: 41  HPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLH 100
           HPL  K+  WYT+  P V    S+ D ++ +  F TVE FW    ++  P  LP  +D H
Sbjct: 37  HPLNTKWTLWYTK--PAVDKSESWSDLLRPVTSFQTVEEFWAIIQNIPEPHELPLKSDYH 94
Query: 101 LFKEGIRPLWEDSANCNGGKWIIRFK 126
           +F+  +RP WED AN  GGKW  + +
Sbjct: 95  VFRNDVRPEWEDEANAKGGKWSFQLR 120

>pdb|4AXG|A Chain A, Structure Of Eif4e-Cup Complex Length = 248

Iteration: 1
 Score = 78.6 bits (192), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 38/87 (43%), Positives = 51/87 (58%), Gaps = 4/87 (4%)
Query: 41  HPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLH 100
           HPL N +  WY       R++ S+ED   +I  F TVE FW  Y H+  PS +   +D  
Sbjct: 70  HPLMNVWTLWYLEND---RSK-SWEDMQNEITSFDTVEDFWSLYNHIKPPSEIKLGSDYS 125
Query: 101 LFKEGIRPLWEDSANCNGGKWIIRFKK 127
           LFK+ IRP+WED+AN  GG+W+I   K
Sbjct: 126 LFKKNIRPMWEDAANKQGGRWVITLNK 152

>pdb|1RF8|A Chain A, Solution Structure Of The Yeast Translation Initiation Factor Eif4e In Complex With M7gdp And Eif4gi Residues 393 To 490 Length = 213

Iteration: 1
 Score = 77.4 bits (189), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 41  HPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLH 100
           HPL  K+  WYT+  P V    S+ D ++ +  F TVE FW    ++  P  LP  +D H
Sbjct: 37  HPLNTKWTLWYTK--PAVDKSESWSDLLRPVTSFQTVEEFWAIIQNIPEPHELPLKSDYH 94
Query: 101 LFKEGIRPLWEDSANCNGGKWIIRF 125
           +F+  +RP WED AN  GGKW  + 
Sbjct: 95  VFRNDVRPEWEDEANAKGGKWSFQL 119

>pdb|3M93|A Chain A, Complex Crystal Structure Of Ascaris Suum Eif4e-3 With M7g Cap Length = 189

Iteration: 1
 Score = 75.5 bits (184), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 49/87 (56%), Gaps = 4/87 (4%)
Query: 41  HPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLH 100
           HPL+  +  WY +          +ED +K++  F TVE FW  Y H+   S L   +D +
Sbjct: 3   HPLQCHWALWYLK----ADRSKDWEDCLKQVAVFDTVEDFWSLYNHIQAASGLTWGSDYY 58
Query: 101 LFKEGIRPLWEDSANCNGGKWIIRFKK 127
           LFKEGI+P+WED  N  GG+W++   K
Sbjct: 59  LFKEGIKPMWEDENNVKGGRWLVVVDK 85

>pdb|2IDV|A Chain A, Crystal Structure Of Wheat C113s Mutant Eif4e Bound To 7- Methyl-Gdp Length = 177

Iteration: 1
 Score = 74.7 bits (182), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 39/94 (41%), Positives = 48/94 (51%), Gaps = 1/94 (1%)
Query: 41  HPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLH 100
           HPL+N + FW+     G   Q ++   I  I  FSTVE FW  Y ++  PS L    D H
Sbjct: 2   HPLENAWTFWFDN-PQGKSRQVAWGSTIHPIHTFSTVEDFWGLYNNIHNPSKLNVGADFH 60
Query: 101 LFKEGIRPLWEDSANCNGGKWIIRFKKVVSGRFW 134
            FK  I P WED  + NGGKW I   +  S  FW
Sbjct: 61  CFKNKIEPKWEDPISANGGKWTISCGRGKSDTFW 94

>pdb|2W97|B Chain B, Crystal Structure Of Eif4e Bound To Glycerol And Eif4g1 Peptide Length = 217

Iteration: 1
 Score = 73.6 bits (179), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 49/87 (56%), Gaps = 4/87 (4%)
Query: 41  HPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLH 100
           HPL+N++  W+ ++        +++ N++ I  F TVE FW  Y H+   S L    D  
Sbjct: 37  HPLQNRWALWFFKKDKS----KTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYS 92
Query: 101 LFKEGIRPLWEDSANCNGGKWIIRFKK 127
           LFK+GI P+WED  N  GG+W+I   K
Sbjct: 93  LFKDGIEPMWEDEKNKRGGRWLITLNK 119

>pdb|2IDR|A Chain A, Crystal Structure Of Translation Initiation Factor Eif4e From Wheat Length = 177

Iteration: 1
 Score = 73.6 bits (179), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 39/94 (41%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 41  HPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLH 100
           HPL+N + FW+     G   Q ++   I  I  FSTVE FW  Y ++  PS L    D H
Sbjct: 2   HPLENAWTFWFDN-PQGKSRQVAWGSTIHPIHTFSTVEDFWGLYNNIHNPSKLNVGADFH 60
Query: 101 LFKEGIRPLWEDSANCNGGKWIIRFKKVVSGRFW 134
            FK  I P WED    NGGKW I   +  S  FW
Sbjct: 61  CFKNKIEPKWEDPICANGGKWTISCGRGKSDTFW 94

>pdb|4DT6|A Chain A, Co-Crystal Structure Of Eif4e With Inhibitor Length = 240

Iteration: 1
 Score = 72.4 bits (176), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 4/87 (4%)
Query: 41  HPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLH 100
           HPL+N++  W+ +         +++ N++ I  F TVE FW  Y H+   S L    D  
Sbjct: 60  HPLQNRWALWFFKNDKS----KTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYS 115
Query: 101 LFKEGIRPLWEDSANCNGGKWIIRFKK 127
           LFK+GI P+WED  N  GG+W+I   K
Sbjct: 116 LFKDGIEPMWEDEKNKRGGRWLITLNK 142

>pdb|1IPB|A Chain A, Crystal Structure Of Eukaryotic Initiation Factor 4e Complexed With 7-methyl Gpppa Length = 217

Iteration: 1
 Score = 72.4 bits (176), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 4/87 (4%)
Query: 41  HPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLH 100
           HPL+N++  W+ +         +++ N++ I  F TVE FW  Y H+   S L    D  
Sbjct: 37  HPLQNRWALWFFKNDKS----KTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYS 92
Query: 101 LFKEGIRPLWEDSANCNGGKWIIRFKK 127
           LFK+GI P+WED  N  GG+W+I   K
Sbjct: 93  LFKDGIEPMWEDEKNKRGGRWLITLNK 119

>pdb|1WKW|A Chain A, Crystal Structure Of The Ternary Complex Of Eif4e-M7gpppa- 4ebp1 Peptide Length = 191

Iteration: 1
 Score = 72.0 bits (175), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 4/87 (4%)
Query: 41  HPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLH 100
           HPL+N++  W+ +         +++ N++ I  F TVE FW  Y H+   S L    D  
Sbjct: 11  HPLQNRWALWFFKNDK----SKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYS 66
Query: 101 LFKEGIRPLWEDSANCNGGKWIIRFKK 127
           LFK+GI P+WED  N  GG+W+I   K
Sbjct: 67  LFKDGIEPMWEDEKNKRGGRWLITLNK 93

>pdb|1EJ1|A Chain A, Cocrystal Structure Of The Messenger Rna 5' Cap-Binding Protein (Eif4e) Bound To 7-Methyl-Gdp Length = 190

Iteration: 1
 Score = 72.0 bits (175), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 4/87 (4%)
Query: 41  HPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLH 100
           HPL+N++  W+ +         +++ N++ I  F TVE FW  Y H+   S L    D  
Sbjct: 10  HPLQNRWALWFFKNDK----SKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYS 65
Query: 101 LFKEGIRPLWEDSANCNGGKWIIRFKK 127
           LFK+GI P+WED  N  GG+W+I   K
Sbjct: 66  LFKDGIEPMWEDEKNKRGGRWLITLNK 92

>pdb|2WMC|A Chain A, Crystal Structure Of Eukaryotic Initiation Factor 4e From Pisum Sativum Length = 178

Iteration: 1
 Score = 67.4 bits (163), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 49/95 (51%), Gaps = 3/95 (3%)
Query: 41  HPLKNKFVFWYTRRTPGVRT-QTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDL 99
           H L+N + FW+   TP  ++ Q ++  +++ I  FSTVE FW  Y ++  P  L    D 
Sbjct: 3   HLLENSWTFWFD--TPAAKSKQAAWGSSMRPIYTFSTVEEFWSIYNNIHHPGKLAVGADF 60
Query: 100 HLFKEGIRPLWEDSANCNGGKWIIRFKKVVSGRFW 134
           + FK  I P WED    NGGKW   + K  S   W
Sbjct: 61  YCFKHKIEPKWEDPICANGGKWTANYPKGKSDTSW 95

>pdb|3HXG|A Chain A, Crystal Structure Of Schistsome Eif4e Complexed With M7gpppa And 4e-Bp Length = 189

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 47/83 (56%), Gaps = 4/83 (4%)
Query: 41  HPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLH 100
           HPL++ + ++  +     R    +++ ++K+  FST+E FW    H  RP  +    DL+
Sbjct: 10  HPLQDSWSYYLFQ----FRKALDWDECLEKVATFSTIEDFWSVLTHTVRPREITYGKDLY 65
Query: 101 LFKEGIRPLWEDSANCNGGKWII 123
           +FK  I P WED  N NGG+W+I
Sbjct: 66  MFKSDIMPKWEDPKNENGGRWLI 88

>pdb|4B6V|A Chain A, The Third Member Of The Eif4e Family Represses Gene Expression Via A Novel Mode Of Recognition Of The Methyl-7 Guanosine Cap Moiety Length = 207

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 49/97 (50%), Gaps = 1/97 (1%)
Query: 42  PLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHL 101
           PL + + FW  R  PG  T      N+KKI    TV+ FW  Y ++   + LP     HL
Sbjct: 31  PLHSPWTFWLDRSLPGA-TAAECASNLKKIYTVQTVQIFWSVYNNIPPVTSLPLRCSYHL 89
Query: 102 FKEGIRPLWEDSANCNGGKWIIRFKKVVSGRFWEDLV 138
            +   RPLWE+ +N  GG W ++  K  +   W++L+
Sbjct: 90  MRGERRPLWEEESNAKGGVWKMKVPKDSTSTVWKELL 126

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	164
2idr_A	177	Eukaryotic translation initiation factor 4E-1; euk	2e-30
1ipb_A	217	Eukaryotic translation initiation factor 4E; prote	3e-28
2jgb_A	195	Eukaryotic translation initiation factor 4E type 2	9e-28
3hxi_A	189	Eukaryotic translation initiation 4E; protein-mRNA	4e-27
1ap8_A	213	Translation initiation factor EIF4E; RNA CAP; HET:	1e-26
3m94_A	189	Translation initiation factor 4E; EIF4E, berkeley	3e-26
1l8b_A	190	Eukaryotic translation initiation factor 4E; eukar	5e-26

>2idr_A Eukaryotic translation initiation factor 4E-1; eukaryotic initiation factor 4E, EIF4E, translation regulator; 1.85A {Triticum aestivum} PDB: 2idv_A* 2wmc_A* Length = 177

 Score =  108 bits (270), Expect = 2e-30
 Identities = 38/98 (38%), Positives = 47/98 (47%), Gaps = 1/98 (1%)

Query: 41  HPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLH 100
           HPL+N + FW+       R   ++   I  I  FSTVE FW  Y ++  PS L    D H
Sbjct: 2   HPLENAWTFWFDNPQGKSRQV-AWGSTIHPIHTFSTVEDFWGLYNNIHNPSKLNVGADFH 60

Query: 101 LFKEGIRPLWEDSANCNGGKWIIRFKKVVSGRFWEDLV 138
            FK  I P WED    NGGKW I   +  S  FW   +
Sbjct: 61  CFKNKIEPKWEDPICANGGKWTISCGRGKSDTFWLHTL 98

>1ipb_A Eukaryotic translation initiation factor 4E; protein biosynthesis, RNA binding protein; HET: GTA; 2.00A {Homo sapiens} SCOP: d.86.1.1 PDB: 1ipc_A* 2gpq_A 2v8w_A* 2v8x_A* 2v8y_A* 2w97_A* 3smu_A 3tf2_A 3u7x_A 4dt6_A* 4dum_A* 2w97_B* Length = 217

 Score =  103 bits (257), Expect = 3e-28
 Identities = 37/130 (28%), Positives = 58/130 (44%), Gaps = 8/130 (6%)

Query: 12  NNTQTVADSVDNNNKDAEERQARELKANLHPLKNKFVFWYTRRTPGVRTQTSYEDNIKKI 71
                   + +    ++ +  A       HPL+N++  W+ +         +++ N++ I
Sbjct: 8   TTPTPNPPTTEEEKTESNQEVANPEHYIKHPLQNRWALWFFKNDKS----KTWQANLRLI 63

Query: 72  VDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKKVVSG 131
             F TVE FW  Y H+   S L    D  LFK+GI P+WED  N  GG+W+I   K    
Sbjct: 64  SKFDTVEDFWALYNHIQLSSNLMPGCDYSLFKDGIEPMWEDEKNKRGGRWLITLNKQQRR 123

Query: 132 ----RFWEDL 137
               RFW + 
Sbjct: 124 SDLDRFWLET 133

>2jgb_A Eukaryotic translation initiation factor 4E type 2; phosphorylation, 4EHP, EIF4E, RNA- binding, acetylation, CAP-binding; HET: MGT; 1.7A {Homo sapiens} PDB: 2jgc_A Length = 195

 Score =  101 bits (252), Expect = 9e-28
 Identities = 56/99 (56%), Positives = 72/99 (72%), Gaps = 1/99 (1%)

Query: 41  HPLKNKFVFWYTRRTPGVRTQT-SYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDL 99
           HPL+  + FWY+RRTPG  T + SYE NIK+I  F++VE FW  Y H+ RP  L   +D 
Sbjct: 15  HPLQYNYTFWYSRRTPGRPTSSQSYEQNIKQIGTFASVEQFWRFYSHMVRPGDLTGHSDF 74

Query: 100 HLFKEGIRPLWEDSANCNGGKWIIRFKKVVSGRFWEDLV 138
           HLFKEGI+P+WED AN NGGKWIIR +K ++ R WE+L+
Sbjct: 75  HLFKEGIKPMWEDDANKNGGKWIIRLRKGLASRCWENLI 113

>3hxi_A Eukaryotic translation initiation 4E; protein-mRNA CAP complex, acetylation, phosphoprotein, protein synthesis inhibitor; HET: GTG; 1.80A {Schistosoma mansoni} PDB: 3hxg_A* Length = 189

 Score = 99.3 bits (247), Expect = 4e-27
 Identities = 33/117 (28%), Positives = 56/117 (47%), Gaps = 9/117 (7%)

Query: 41  HPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLH 100
           HPL++ + ++  +          +++ ++K+  FST+E FW    H  RP  +    DL+
Sbjct: 10  HPLQDSWSYYLFQFRKA----LDWDECLEKVATFSTIEDFWSVLTHTVRPREITYGKDLY 65

Query: 101 LFKEGIRPLWEDSANCNGGKWIIRF-KKVVSGRFWED----LVRRRLATASPPKHIC 152
           +FK  I P WED  N NGG+W+I    +      W++    L+     T    + IC
Sbjct: 66  MFKSDIMPKWEDPKNENGGRWLINVTARQDVDFLWDELLMLLIGSDWDTDEEDRQIC 122

>1ap8_A Translation initiation factor EIF4E; RNA CAP; HET: M7G; NMR {Saccharomyces cerevisiae} SCOP: d.86.1.1 PDB: 1rf8_A* Length = 213

 Score = 99.1 bits (246), Expect = 1e-26
 Identities = 38/137 (27%), Positives = 60/137 (43%), Gaps = 7/137 (5%)

Query: 4   TDKKESDINNTQTVADSVDNNNKDAEERQARELKANLHPLKNKFVFWYTRRTPGVRTQTS 63
            ++         +V D+         +    ++K   HPL  K+  WYT+  P V    S
Sbjct: 3   VEEVSKKFEENVSVDDTTATPKTVLSDSAHFDVK---HPLNTKWTLWYTK--PAVDKSES 57

Query: 64  YEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGKWII 123
           + D ++ +  F TVE FW    ++  P  LP  +D H+F+  +RP WED AN  GGKW  
Sbjct: 58  WSDLLRPVTSFQTVEEFWAIIQNIPEPHELPLKSDYHVFRNDVRPEWEDEANAKGGKWSF 117

Query: 124 RFKK--VVSGRFWEDLV 138
           + +         W   +
Sbjct: 118 QLRGKGADIDELWLRTL 134

>3m94_A Translation initiation factor 4E; EIF4E, berkeley structural genomics center, BSGC; HET: M7M; 2.05A {Ascaris suum} PDB: 3m93_A* Length = 189

 Score = 97.5 bits (242), Expect = 3e-26
 Identities = 36/102 (35%), Positives = 54/102 (52%), Gaps = 8/102 (7%)

Query: 41  HPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLH 100
           HPL+  +  WY +          +ED +K++  F TVE FW  Y H+   S L   +D +
Sbjct: 3   HPLQCHWALWYLKAD----RSKDWEDCLKQVAVFDTVEDFWSLYNHIQAASGLTWGSDYY 58

Query: 101 LFKEGIRPLWEDSANCNGGKWIIRFKKVVSG----RFWEDLV 138
           LFKEGI+P+WED  N  GG+W++   K         +W +L+
Sbjct: 59  LFKEGIKPMWEDENNVKGGRWLVVVDKQKRAQLLDHYWLELL 100

>1l8b_A Eukaryotic translation initiation factor 4E; eukaryotic initiation factor 4E, EIF4E, CAP, 7-METHYLGPPPG, RNA binding protein; HET: MGP; 1.80A {Mus musculus} SCOP: d.86.1.1 PDB: 1ej4_A* 1ejh_A* 1ej1_A* 1wkw_A* 3am7_A* Length = 190

 Score = 96.7 bits (240), Expect = 5e-26
 Identities = 36/101 (35%), Positives = 52/101 (51%), Gaps = 8/101 (7%)

Query: 41  HPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLH 100
           HPL+N++  W+ +         +++ N++ I  F TVE FW  Y H+   S L    D  
Sbjct: 10  HPLQNRWALWFFKNDKS----KTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYS 65

Query: 101 LFKEGIRPLWEDSANCNGGKWIIRFKKVVSG----RFWEDL 137
           LFK+GI P+WED  N  GG+W+I   K        RFW + 
Sbjct: 66  LFKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLET 106

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	164
2idr_A	177	Eukaryotic translation initiation factor 4E-1; euk	100.0
2jgb_A	195	Eukaryotic translation initiation factor 4E type 2	100.0
1l8b_A	190	Eukaryotic translation initiation factor 4E; eukar	100.0
1ipb_A	217	Eukaryotic translation initiation factor 4E; prote	100.0
1ap8_A	213	Translation initiation factor EIF4E; RNA CAP; HET:	100.0
3m94_A	189	Translation initiation factor 4E; EIF4E, berkeley	100.0
3hxi_A	189	Eukaryotic translation initiation 4E; protein-mRNA	100.0
4axg_A	248	Eukaryotic translation initiation factor 4E; 4E-BP	100.0
1ztp_A	251	Basophilic leukemia expressed protein BLES03; HS.4	97.79

>2idr_A Eukaryotic translation initiation factor 4E-1; eukaryotic initiation factor 4E, EIF4E, translation regulator; 1.85A {Triticum aestivum} PDB: 2idv_A* 2wmc_A*

Probab=100.00  E-value=1.8e-49  Score=316.30  Aligned_cols=120  Identities=34%  Similarity=0.599  Sum_probs=113.4

Q ss_pred             CCCCCCceEEEEEcCCCCCCCccchHhhcceeeeecchhhHHHhhcCCCCCCCCCCCceeEEeeCCCccccccCCCCCCc
Q 031207           40 LHPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGG  119 (164)
Q Consensus        40 ~h~L~~~WtfW~~~~~~~~~~~~~y~~~l~~I~tf~TVE~FW~~y~~l~~ps~L~~~~~~~lFK~GI~P~WEDp~N~nGG  119 (164)
                      .|||+++|||||+.+..+.+ ..+|+++|++|++|+|||+||++|+||++|++|+.+++|||||+||+||||||+|++||
T Consensus         1 ~HpL~~~Wt~W~~~~~~~~~-~~~y~~~l~~i~~f~TVE~FW~~yn~i~~ps~L~~~~~~~lFK~gI~P~WED~~N~~GG   79 (177)
T 2idr_A            1 AHPLENAWTFWFDNPQGKSR-QVAWGSTIHPIHTFSTVEDFWGLYNNIHNPSKLNVGADFHCFKNKIEPKWEDPICANGG   79 (177)
T ss_dssp             CCEEEEEEEEEEECTTCSSC-EEETTEEECCEEEEEEHHHHHHHHTTSCCGGGSCTTCEEEEEEGGGCCSTTCCTTTTCE
T ss_pred             CCCCCCeEEEEEEcCCCCCc-ccchHhhCeEEEEEcCHHHHHHHHhcCCCHHHCCCCCEEEEEcCCceecccCCCCCCCC
Confidence            49999999999998764333 46899999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEcCCchHHHHHHHHHHHhcCCC-CCCCeeEEEEEeEe
Q 031207          120 KWIIRFKKVVSGRFWEDLVRRRLATAS-PPKHICILQQLSIF  160 (164)
Q Consensus       120 kw~i~~~k~~~d~~We~lll~~IGe~f-~~d~I~Gvvvs~~~  160 (164)
                      +|+|+++|..++++|++|||++|||+| .+++|||||+++|.
T Consensus        80 ~w~i~~~k~~~d~~W~~lll~~IGe~f~~~d~IcGvvvsvR~  121 (177)
T 2idr_A           80 KWTISCGRGKSDTFWLHTLLAMIGEQFDFGDEICGAVVSVRQ  121 (177)
T ss_dssp             EEEEEECTTCCHHHHHHHHHHHHTTCSTTGGGEEEEEEEECS
T ss_pred             EEEEEECcCcHHHHHHHHHHHHhcCcCCCCCceEEEEEEEec
Confidence            999999999999999999999999999 67899999999996

>2jgb_A Eukaryotic translation initiation factor 4E type 2; phosphorylation, 4EHP, EIF4E, RNA- binding, acetylation, CAP-binding; HET: MGT; 1.7A {Homo sapiens} PDB: 2jgc_A

Probab=100.00  E-value=7.5e-49  Score=316.97  Aligned_cols=126  Identities=47%  Similarity=0.891  Sum_probs=116.9

Q ss_pred             ccCCCCCCCCceEEEEEcCCCCC-CCccchHhhcceeeeecchhhHHHhhcCCCCCCCCCCCceeEEeeCCCccccccCC
Q 031207           36 LKANLHPLKNKFVFWYTRRTPGV-RTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSA  114 (164)
Q Consensus        36 ~~~~~h~L~~~WtfW~~~~~~~~-~~~~~y~~~l~~I~tf~TVE~FW~~y~~l~~ps~L~~~~~~~lFK~GI~P~WEDp~  114 (164)
                      ..+..|||+++|||||+...++. ....+|+++|++|++|+|||+||++|+||++|++|+.+++|||||+||+||||||+
T Consensus        10 ~~~~~hpL~~~Wt~W~~~~~~~~~~~~~~y~~~l~~i~tf~TVE~FW~~yn~i~~ps~L~~~~dy~lFK~gI~P~WED~~   89 (195)
T 2jgb_A           10 PGPAEHPLQYNYTFWYSRRTPGRPTSSQSYEQNIKQIGTFASVEQFWRFYSHMVRPGDLTGHSDFHLFKEGIKPMWEDDA   89 (195)
T ss_dssp             CCTTCCEEEEEEEEEEEEECTTCCCCHHHHHHHEEEEEEEEEHHHHHHHHTTSCCGGGCCSEEEEEEEETTCCSSTTSTT
T ss_pred             CCCCcCccCCeEEEEEEcCCCCCccchhhhhhhceEEEEEecHHHHHHHHhcCCChHHCCCCceEEEEeCCCcccccCCC
Confidence            44678999999999999865432 23468999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCceEEEEEcCCchHHHHHHHHHHHhcCCC-CCCCeeEEEEEeEee
Q 031207          115 NCNGGKWIIRFKKVVSGRFWEDLVRRRLATAS-PPKHICILQQLSIFH  161 (164)
Q Consensus       115 N~nGGkw~i~~~k~~~d~~We~lll~~IGe~f-~~d~I~Gvvvs~~~~  161 (164)
                      |++||||+|+++|..++++|++|||++|||+| .+++|||||+++|..
T Consensus        90 N~~GGkw~i~~~k~~~d~~W~~llLa~IGE~f~~~d~IcGvvvsvR~~  137 (195)
T 2jgb_A           90 NKNGGKWIIRLRKGLASRCWENLILAMLGEQFMVGEEICGAVVSVRFQ  137 (195)
T ss_dssp             TTTCEEEEEEECTTCHHHHHHHHHHHHHTTCSCCTTCEEEEEEEECSS
T ss_pred             CCCCcEEEEEeCcccHHHHHHHHHHHHhcCCCCCCCceeeeEEEEecC
Confidence            99999999999999999999999999999999 789999999999974

>1l8b_A Eukaryotic translation initiation factor 4E; eukaryotic initiation factor 4E, EIF4E, CAP, 7-METHYLGPPPG, RNA binding protein; HET: MGP; 1.80A {Mus musculus} SCOP: d.86.1.1 PDB: 1ej4_A* 1ejh_A* 1ej1_A* 1wkw_A* 3am7_A*

Probab=100.00  E-value=1.2e-47  Score=308.70  Aligned_cols=120  Identities=31%  Similarity=0.644  Sum_probs=110.7

Q ss_pred             CCCCCCCCceEEEEEcCCCCCCCccchHhhcceeeeecchhhHHHhhcCCCCCCCCCCCceeEEeeCCCccccccCCCCC
Q 031207           38 ANLHPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCN  117 (164)
Q Consensus        38 ~~~h~L~~~WtfW~~~~~~~~~~~~~y~~~l~~I~tf~TVE~FW~~y~~l~~ps~L~~~~~~~lFK~GI~P~WEDp~N~n  117 (164)
                      ...|||+++|||||+.+..    ..+|+++|++|++|+|||+||++|+||++|++|+.+++|||||+||+||||||+|++
T Consensus         7 ~~~hpL~~~Wt~W~~~~~~----~~~y~~~l~~i~tf~TVE~FW~~yn~i~~ps~L~~~~~y~lFK~gI~P~WED~~N~~   82 (190)
T 1l8b_A            7 YIKHPLQNRWALWFFKNDK----SKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSLFKDGIEPMWEDEKNKR   82 (190)
T ss_dssp             --CCEEEEEEEEEEEECCS----SSCTGGGEEEEEEEEEHHHHHHHHTTSCCGGGSCTTEEEEEEETTCCSSTTSTTTTT
T ss_pred             cccCCCCCeEEEEEEcCCC----ccchhhhceEEEEEecHHHHHHHHHcCCCHHHCCCCCEEEEECCCceecccCCCCCC
Confidence            4679999999999998653    348999999999999999999999999999999999999999999999999999999


Q ss_pred             CceEEEEEcCCc----hHHHHHHHHHHHhcCCC--CCCCeeEEEEEeEee
Q 031207          118 GGKWIIRFKKVV----SGRFWEDLVRRRLATAS--PPKHICILQQLSIFH  161 (164)
Q Consensus       118 GGkw~i~~~k~~----~d~~We~lll~~IGe~f--~~d~I~Gvvvs~~~~  161 (164)
                      ||||+|+++|..    ++++|++|||++|||+|  .+++|||||+++|..
T Consensus        83 GG~w~i~~~k~~~~~~~d~~W~~lll~~IGe~f~~~~d~IcGvvvsvR~~  132 (190)
T 1l8b_A           83 GGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGAVVNVRAK  132 (190)
T ss_dssp             CEEEEEEEEGGGTTTTHHHHHHHHHHHHHTTTTGGGGGGEEEEEEEECSS
T ss_pred             CCEEEEEecCccCcchHHHHHHHHHHHHhhcccccCCCceeeEEEEeecC
Confidence            999999998764    59999999999999999  488999999999974

>1ipb_A Eukaryotic translation initiation factor 4E; protein biosynthesis, RNA binding protein; HET: GTA; 2.00A {Homo sapiens} SCOP: d.86.1.1 PDB: 1ipc_A* 2gpq_A 2v8w_A* 2v8x_A* 2v8y_A* 2w97_A* 3smu_A 3tf2_A 3u7x_A 4dt6_A* 4dum_A* 2w97_B*

Probab=100.00  E-value=1.2e-47  Score=314.64  Aligned_cols=120  Identities=31%  Similarity=0.644  Sum_probs=111.7

Q ss_pred             CCCCCCCCceEEEEEcCCCCCCCccchHhhcceeeeecchhhHHHhhcCCCCCCCCCCCceeEEeeCCCccccccCCCCC
Q 031207           38 ANLHPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCN  117 (164)
Q Consensus        38 ~~~h~L~~~WtfW~~~~~~~~~~~~~y~~~l~~I~tf~TVE~FW~~y~~l~~ps~L~~~~~~~lFK~GI~P~WEDp~N~n  117 (164)
                      ...|||+++|||||+.+..    ..+|+++|++|++|+|||+||++|+||++|++|+.+++|||||+||+||||||+|++
T Consensus        34 ~~~hpL~~~Wt~W~~~~~~----~~~y~~~l~~I~tf~TVE~FW~~yn~i~~ps~L~~~~dy~lFK~GI~P~WEDp~N~~  109 (217)
T 1ipb_A           34 YIKHPLQNRWALWFFKNDK----SKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSLFKDGIEPMWEDEKNKR  109 (217)
T ss_dssp             TSCCEEEEEEEEEEECCCT----TSCTGGGEEEEEEEEEHHHHHHHHHHSCCGGGSCTTCEEEEEETTCCSSTTSTTTTT
T ss_pred             ccCCCCCCeEEEEEEeCCc----ccchhhhceEEEEEccHHHHHHHHHcCCCHHHCCCCCEEEEECCCceecccCCCCCC
Confidence            4579999999999998652    358999999999999999999999999999999999999999999999999999999


Q ss_pred             CceEEEEEcCCc----hHHHHHHHHHHHhcCCC--CCCCeeEEEEEeEee
Q 031207          118 GGKWIIRFKKVV----SGRFWEDLVRRRLATAS--PPKHICILQQLSIFH  161 (164)
Q Consensus       118 GGkw~i~~~k~~----~d~~We~lll~~IGe~f--~~d~I~Gvvvs~~~~  161 (164)
                      ||||+|+++|..    ++++|++|||++|||+|  .+++||||||++|..
T Consensus       110 GGkw~i~~~k~~~~~~ld~~W~~llLa~IGE~f~~~~d~IcGvvvsvR~~  159 (217)
T 1ipb_A          110 GGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGAVVNVRAK  159 (217)
T ss_dssp             CEEEEEECCTTHHHHTHHHHHHHHHHHHHTTTTGGGGGGEEEEEEECCTT
T ss_pred             CCEEEEEeccccCcchHHHHHHHHHHHHhhccccccCCccceEEEEeecC
Confidence            999999999865    49999999999999999  478999999999964

>1ap8_A Translation initiation factor EIF4E; RNA CAP; HET: M7G; NMR {Saccharomyces cerevisiae} SCOP: d.86.1.1 PDB: 1rf8_A*

Probab=100.00  E-value=3.3e-47  Score=311.26  Aligned_cols=124  Identities=27%  Similarity=0.558  Sum_probs=112.3

Q ss_pred             cccCCCCCCCCceEEEEEcCCCCCCCccchHhhcceeeeecchhhHHHhhcCCCCCCCCCCCceeEEeeCCCccccccCC
Q 031207           35 ELKANLHPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSA  114 (164)
Q Consensus        35 ~~~~~~h~L~~~WtfW~~~~~~~~~~~~~y~~~l~~I~tf~TVE~FW~~y~~l~~ps~L~~~~~~~lFK~GI~P~WEDp~  114 (164)
                      ......|||+++|||||+.+..  ....+|.++|++|++|+|||+||++|+||++|++|+.+++|||||+||+||||||+
T Consensus        31 ~~~~~~hpL~~~Wt~W~~~~~~--~~~~~y~~~l~~I~tf~TVE~FW~~yn~i~~ps~L~~~~dy~lFK~GI~P~WEDp~  108 (213)
T 1ap8_A           31 AHFDVKHPLNTKWTLWYTKPAV--DKSESWSDLLRPVTSFQTVEEFWAIIQNIPEPHELPLKSDYHVFRNDVRPEWEDEA  108 (213)
T ss_dssp             CCCCCSSEEEEEEEEEEECCCG--GGTSCHHHHCEEEEEEEESHHHHHHHHTCCTTTTSCSCCEEEEECSSCCSCTTTTT
T ss_pred             CCCCCccccCCcEEEEEEcCCc--ccccchhhhceEEEEEccHHHHHHHHHcCCChHHCCCCCEEEEEcCCceecccCCC
Confidence            3335789999999999998764  22358999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCceEEEEEc--CCchHHHHHHHHHHHhcCCC-CCC-CeeEEEEEeEe
Q 031207          115 NCNGGKWIIRFK--KVVSGRFWEDLVRRRLATAS-PPK-HICILQQLSIF  160 (164)
Q Consensus       115 N~nGGkw~i~~~--k~~~d~~We~lll~~IGe~f-~~d-~I~Gvvvs~~~  160 (164)
                      |++||||+|+++  +..++++|++|||++|||+| ..+ +|||||+++|.
T Consensus       109 N~~GGkw~i~~~~k~~~~d~~W~~llLa~IGE~f~~~~deIcGvvvsvR~  158 (213)
T 1ap8_A          109 NAKGGKWSFQLRGKGADIDELWLRTLLAVIGETIDEDDSQINGVVLSIRK  158 (213)
T ss_dssp             TTTSEEEEEEECSCCSSSHHHHHHHHHHHTSTTTCSSTTTEEEEEEECCT
T ss_pred             CCCCCEEEEEECCCcchHHHHHHHHHHHHhcCcccCCCCcEeEEEEEeec
Confidence            999999999984  34899999999999999999 444 89999999996

>3m94_A Translation initiation factor 4E; EIF4E, berkeley structural genomics center, BSGC; HET: M7M; 2.05A {Ascaris suum} SCOP: d.86.1.0 PDB: 3m93_A*

Probab=100.00  E-value=3.2e-47  Score=306.50  Aligned_cols=118  Identities=32%  Similarity=0.662  Sum_probs=110.3

Q ss_pred             CCCCCCceEEEEEcCCCCCCCccchHhhcceeeeecchhhHHHhhcCCCCCCCCCCCceeEEeeCCCccccccCCCCCCc
Q 031207           40 LHPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGG  119 (164)
Q Consensus        40 ~h~L~~~WtfW~~~~~~~~~~~~~y~~~l~~I~tf~TVE~FW~~y~~l~~ps~L~~~~~~~lFK~GI~P~WEDp~N~nGG  119 (164)
                      .|||+++|||||+....    ..+|+++|++|++|+|||+||++|+||++|++|+.+++|||||+||+||||||+|++||
T Consensus         2 ~HpL~~~Wt~W~~~~~~----~~~y~~~l~~i~tf~TVE~FW~~yn~i~~ps~L~~~~dy~lFK~gI~P~WED~~N~~GG   77 (189)
T 3m94_A            2 RHPLQCHWALWYLKADR----SKDWEDCLKQVAVFDTVEDFWSLYNHIQAASGLTWGSDYYLFKEGIKPMWEDENNVKGG   77 (189)
T ss_dssp             CCEEEEEEEEEEECCCS----SSCGGGGEEEEEEEEEHHHHHHHHTTSCCGGGSCTTCEEEEEETTCCSSTTSTTTTTCE
T ss_pred             CCCCCCcEEEEEECCCC----ccChhhhceEEEEEecHHHHHHHhhCCCChhHCCCCCeEEEecCCcccCCCCCCCCCCC
Confidence            69999999999986542    25899999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEcCC----chHHHHHHHHHHHhcCCC--CCCCeeEEEEEeEee
Q 031207          120 KWIIRFKKV----VSGRFWEDLVRRRLATAS--PPKHICILQQLSIFH  161 (164)
Q Consensus       120 kw~i~~~k~----~~d~~We~lll~~IGe~f--~~d~I~Gvvvs~~~~  161 (164)
                      +|+|+++|.    .++++|++|||++|||+|  .+++||||||++|..
T Consensus        78 kw~i~~~k~~~~~~~d~~W~~lll~~IGe~f~~~~~~IcGvvvsvR~~  125 (189)
T 3m94_A           78 RWLVVVDKQKRAQLLDHYWLELLMAIIGEQFEDNGEYICGAVVNVRQK  125 (189)
T ss_dssp             EEEEEECTTTHHHHHHHHHHHHHHHHHTTCSGGGGGGEEEEEEECCSS
T ss_pred             EEEEEecCccccchHHHHHHHHHHHHhCCcccccCCcCceEEEEEecC
Confidence            999999875    579999999999999999  589999999999963

>3hxi_A Eukaryotic translation initiation 4E; protein-mRNA CAP complex, acetylation, phosphoprotein, protein synthesis inhibitor; HET: GTG; 1.80A {Schistosoma mansoni} SCOP: d.86.1.0 PDB: 3hxg_A*

Probab=100.00  E-value=2e-47  Score=307.59  Aligned_cols=123  Identities=26%  Similarity=0.529  Sum_probs=112.1

Q ss_pred             cccCCCCCCCCceEEEEEcCCCCCCCccchHhhcceeeeecchhhHHHhhcCCCCCCCCCCCceeEEeeCCCccccccCC
Q 031207           35 ELKANLHPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSA  114 (164)
Q Consensus        35 ~~~~~~h~L~~~WtfW~~~~~~~~~~~~~y~~~l~~I~tf~TVE~FW~~y~~l~~ps~L~~~~~~~lFK~GI~P~WEDp~  114 (164)
                      +.+...|||+++|||||+.+..   + .+|+++|++|++|+|||+||++|+||++|++|+.+++|||||+||+||||||+
T Consensus         4 ~~~~~~HpL~~~Wt~W~~~~~~---~-~~~~~~l~~i~~f~TVE~FW~~yn~i~~ps~L~~~~d~~lFK~gI~P~WED~~   79 (189)
T 3hxi_A            4 GSPEFPHPLQDSWSYYLFQFRK---A-LDWDECLEKVATFSTIEDFWSVLTHTVRPREITYGKDLYMFKSDIMPKWEDPK   79 (189)
T ss_dssp             ---CCCCEEEEEEEEEEECCCT---T-CCGGGGEEEEEEEEEHHHHHHHHHTSCCTTTCCTTCEEEEEETTSCSSTTSHH
T ss_pred             CCCCccCCCCCeEEEEEECCCC---c-cChhhhceEEEEEeeHHHHHHHHHhCCChHHCCCCceEEEECCCcccCCCCcC
Confidence            4567789999999999997653   2 48999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCceEEEEEcCC-chHHHHHHHHHHHhcCCC--CCCC--eeEEEEEeEee
Q 031207          115 NCNGGKWIIRFKKV-VSGRFWEDLVRRRLATAS--PPKH--ICILQQLSIFH  161 (164)
Q Consensus       115 N~nGGkw~i~~~k~-~~d~~We~lll~~IGe~f--~~d~--I~Gvvvs~~~~  161 (164)
                      |++||||+|+++|. .++++|++|||++|||+|  .+++  |||||+++|..
T Consensus        80 N~~GGkw~i~~~k~~~~d~~W~~lll~~IGe~f~~~~~~~~IcGvvvsvR~~  131 (189)
T 3hxi_A           80 NENGGRWLINVTARQDVDFLWDELLMLLIGSDWDTDEEDRQICGAVFQPRSR  131 (189)
T ss_dssp             HHTCEEEEEECCTTSCHHHHHHHHHHHHHTTCCSSHHHHHHEEEEEEECCTT
T ss_pred             CCCCcEEEEEecCCCcHHHHHHHHHHHHhcCcccccCCCceeeeEEEEeccC
Confidence            99999999999988 699999999999999999  3566  99999999963

>4axg_A Eukaryotic translation initiation factor 4E; 4E-BP, mRNA localization, translation; 2.80A {Drosophila melanogaster}

Probab=100.00  E-value=5.2e-45  Score=304.08  Aligned_cols=120  Identities=35%  Similarity=0.648  Sum_probs=110.7

Q ss_pred             cCCCCCCCCceEEEEEcCCCCCCCccchHhhcceeeeecchhhHHHhhcCCCCCCCCCCCceeEEeeCCCccccccCCCC
Q 031207           37 KANLHPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANC  116 (164)
Q Consensus        37 ~~~~h~L~~~WtfW~~~~~~~~~~~~~y~~~l~~I~tf~TVE~FW~~y~~l~~ps~L~~~~~~~lFK~GI~P~WEDp~N~  116 (164)
                      ....|||+++|||||+.+..    ..+|.+++++|++|+|||+||++|+||++|++|+.+++|||||+||+||||||+|+
T Consensus        66 ~~~kHpL~~~WtlW~~~~~~----~~~~~~~l~~I~~f~TVE~FW~~yn~i~~ps~l~~~~~~~lFK~gI~P~WED~~N~  141 (248)
T 4axg_A           66 HLYKHPLMNVWTLWYLENDR----SKSWEDMQNEITSFDTVEDFWSLYNHIKPPSEIKLGSDYSLFKKNIRPMWEDAANK  141 (248)
T ss_dssp             CCCCCEEEEEEEEEEESCSC----CCTTBCCEEEEEEEEEHHHHHHHHTTBCCTTSSCTTEEEEEEETTCCSSSSSTTTT
T ss_pred             cccCCCCCCeEEEEEeeCCC----ccchHHhCeEEEEEcCHHHHHHHHHcCCCHHHCCCCceEEEEcCCcccCCCCccCC
Confidence            34679999999999997542    24799999999999999999999999999999999999999999999999999999


Q ss_pred             CCceEEEEEcCCc---hHHHHHHHHHHHhcCCC-CCCCeeEEEEEeEe
Q 031207          117 NGGKWIIRFKKVV---SGRFWEDLVRRRLATAS-PPKHICILQQLSIF  160 (164)
Q Consensus       117 nGGkw~i~~~k~~---~d~~We~lll~~IGe~f-~~d~I~Gvvvs~~~  160 (164)
                      +||+|+|+++|..   ++++|++|||++|||+| .+++|||||+++|.
T Consensus       142 ~GG~w~~~~~k~~~~~~d~~W~~lll~~IGe~~~~~~~I~Gi~is~R~  189 (248)
T 4axg_A          142 QGGRWVITLNKSSKTDLDNLWLDVLLCLIGEAFDHSDQICGAVINIRG  189 (248)
T ss_dssp             TCEEEEEEEETCCHHHHHHHHHHHHHHHHTTCSSCGGGEEEEEEEECS
T ss_pred             CccEEEEEecccchhHHHHHHHHHHHHHHhCcCCCCCceeceEEEecC
Confidence            9999999998763   58999999999999999 78899999999984

>1ztp_A Basophilic leukemia expressed protein BLES03; HS.433573, BC010512, structural genomics, Pro structure initiative, PSI, CESG; HET: MSE; 2.50A {Homo sapiens} SCOP: d.86.1.2 PDB: 2q4k_A

Probab=97.79  E-value=1.1e-05  Score=67.11  Aligned_cols=43  Identities=12%  Similarity=0.313  Sum_probs=38.9

Q ss_pred             CCCCCCceEEEEEcC-CchHHHHHHHHHHHhcCCCCCCCeeEEEEEeEe
Q 031207          113 SANCNGGKWIIRFKK-VVSGRFWEDLVRRRLATASPPKHICILQQLSIF  160 (164)
Q Consensus       113 p~N~nGGkw~i~~~k-~~~d~~We~lll~~IGe~f~~d~I~Gvvvs~~~  160 (164)
                      +.|..||||+|.+++ ..+|++|+++++++|+++     |||++|+.|+
T Consensus       121 ~~nv~gGKWLIfl~k~~~VD~iW~~I~~ali~g~-----L~gAKVstr~  164 (251)
T 1ztp_A          121 THHVLSGKWLMHLAPGFKLDHAWAGIARAVVEGR-----LQVAKVSPRA  164 (251)
T ss_dssp             HHTCCCEEEEEEECSSHHHHHHHHHHHHHHHHTS-----CSEEEECCBC
T ss_pred             HcCCCCceEEEecChHHHHHHHHHHHHHHHHhCc-----eeEEEEecCC
Confidence            468999999999998 789999999999999875     4999999987

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	164
d1l8ba_	182	d.86.1.1 (A:) Translation initiation factor eIF4e	4e-28
d1ap8a_	213	d.86.1.1 (A:) Translation initiation factor eIF4e	6e-28

>d1l8ba_ d.86.1.1 (A:) Translation initiation factor eIF4e {Mouse (Mus musculus) [TaxId: 10090]} Length = 182

class: Alpha and beta proteins (a+b)
fold: eIF4e-like
superfamily: eIF4e-like
family: Translation initiation factor eIF4e
domain: Translation initiation factor eIF4e
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  100 bits (251), Expect = 4e-28
 Identities = 36/102 (35%), Positives = 53/102 (51%), Gaps = 8/102 (7%)

Query: 41  HPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLH 100
           HPL+N++  W+ +         +++ N++ I  F TVE FW  Y H+   S L    D  
Sbjct: 2   HPLQNRWALWFFKNDKS----KTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYS 57

Query: 101 LFKEGIRPLWEDSANCNGGKWIIRFKKVVSG----RFWEDLV 138
           LFK+GI P+WED  N  GG+W+I   K        RFW + +
Sbjct: 58  LFKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETL 99

>d1ap8a_ d.86.1.1 (A:) Translation initiation factor eIF4e {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 213

class: Alpha and beta proteins (a+b)
fold: eIF4e-like
superfamily: eIF4e-like
family: Translation initiation factor eIF4e
domain: Translation initiation factor eIF4e
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  101 bits (252), Expect = 6e-28
 Identities = 42/140 (30%), Positives = 65/140 (46%), Gaps = 13/140 (9%)

Query: 2   EITDKKESDINNTQTVADSVDNNNKDAEERQARELKANL-HPLKNKFVFWYTRRTPGVRT 60
           E++ K E ++        SVD+     +   +     ++ HPL  K+  WYT+  P V  
Sbjct: 5   EVSKKFEENV--------SVDDTTATPKTVLSDSAHFDVKHPLNTKWTLWYTK--PAVDK 54

Query: 61  QTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGK 120
             S+ D ++ +  F TVE FW    ++  P  LP  +D H+F+  +RP WED AN  GGK
Sbjct: 55  SESWSDLLRPVTSFQTVEEFWAIIQNIPEPHELPLKSDYHVFRNDVRPEWEDEANAKGGK 114

Query: 121 WIIRF--KKVVSGRFWEDLV 138
           W  +   K       W   +
Sbjct: 115 WSFQLRGKGADIDELWLRTL 134

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	164
d1l8ba_	182	Translation initiation factor eIF4e {Mouse (Mus mu	100.0
d1ap8a_	213	Translation initiation factor eIF4e {Baker's yeast	100.0

>d1l8ba_ d.86.1.1 (A:) Translation initiation factor eIF4e {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: eIF4e-like
superfamily: eIF4e-like
family: Translation initiation factor eIF4e
domain: Translation initiation factor eIF4e
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.5e-43  Score=280.49  Aligned_cols=118  Identities=31%  Similarity=0.669  Sum_probs=109.1

Q ss_pred             CCCCCCceEEEEEcCCCCCCCccchHhhcceeeeecchhhHHHhhcCCCCCCCCCCCceeEEeeCCCccccccCCCCCCc
Q 031207           40 LHPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGG  119 (164)
Q Consensus        40 ~h~L~~~WtfW~~~~~~~~~~~~~y~~~l~~I~tf~TVE~FW~~y~~l~~ps~L~~~~~~~lFK~GI~P~WEDp~N~nGG  119 (164)
                      .|||+++|||||+.+..   + .+|.+++++|++|+|||+||++|++|++|++|+.+++|||||+||+|+||||+|++||
T Consensus         1 kHpL~~~Wt~w~~~~~~---~-~~~~~~~~~i~~f~tvE~Fw~~~~~i~~~~~l~~~~~~~lFk~gI~P~WED~~N~~GG   76 (182)
T d1l8ba_           1 KHPLQNRWALWFFKNDK---S-KTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSLFKDGIEPMWEDEKNKRGG   76 (182)
T ss_dssp             CCEEEEEEEEEEEECCS---S-SCTGGGEEEEEEEEEHHHHHHHHTTSCCGGGSCTTEEEEEEETTCCSSTTSTTTTTCE
T ss_pred             CCCCCCeEEEEEEeCCC---C-chhhhcceEEEEEcCHHHHHHHHHcCCChHHCCccceEEEEecCccCCCCCcccCCCC
Confidence            59999999999998653   2 4899999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEc----CCchHHHHHHHHHHHhcCCC--CCCCeeEEEEEeEee
Q 031207          120 KWIIRFK----KVVSGRFWEDLVRRRLATAS--PPKHICILQQLSIFH  161 (164)
Q Consensus       120 kw~i~~~----k~~~d~~We~lll~~IGe~f--~~d~I~Gvvvs~~~~  161 (164)
                      +|+|+++    +..++++|++|||++|||+|  ..++||||++|+|..
T Consensus        77 ~~~~~i~~~~~~~~~~~~W~~lll~~IGe~~~~~~~~I~Gi~~s~r~~  124 (182)
T d1l8ba_          77 RWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGAVVNVRAK  124 (182)
T ss_dssp             EEEEEEEGGGTTTTHHHHHHHHHHHHHTTTTGGGGGGEEEEEEEECSS
T ss_pred             EEEEEECcccccchHHHHHHHHHHHHHhcccccCCCeeccEEEEecCC
Confidence            9999996    45789999999999999999  467899999999843

>d1ap8a_ d.86.1.1 (A:) Translation initiation factor eIF4e {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: eIF4e-like
superfamily: eIF4e-like
family: Translation initiation factor eIF4e
domain: Translation initiation factor eIF4e
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.7e-43  Score=284.56  Aligned_cols=121  Identities=28%  Similarity=0.577  Sum_probs=110.1

Q ss_pred             CCCCCCCceEEEEEcCCCCCCCccchHhhcceeeeecchhhHHHhhcCCCCCCCCCCCceeEEeeCCCccccccCCCCCC
Q 031207           39 NLHPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNG  118 (164)
Q Consensus        39 ~~h~L~~~WtfW~~~~~~~~~~~~~y~~~l~~I~tf~TVE~FW~~y~~l~~ps~L~~~~~~~lFK~GI~P~WEDp~N~nG  118 (164)
                      ..|||+++|||||+.+..+  ...+|.+++++|++|+|||+||++|++|++|++|+.+++|||||+||+|+||||+|++|
T Consensus        35 ~kHpL~~~Wt~wy~~~~~~--~~~~y~~~l~~I~~f~TvE~Fw~~~~~i~~ps~l~~~~~~~lFk~gI~P~WED~~N~nG  112 (213)
T d1ap8a_          35 VKHPLNTKWTLWYTKPAVD--KSESWSDLLRPVTSFQTVEEFWAIIQNIPEPHELPLKSDYHVFRNDVRPEWEDEANAKG  112 (213)
T ss_dssp             CSSEEEEEEEEEEECCCGG--GTSCHHHHCEEEEEEEESHHHHHHHHTCCTTTTSCSCCEEEEECSSCCSCTTTTTTTTS
T ss_pred             cCCcCCCcEEEEEEcCCCC--cccchhhhceEEEEEccHHHHHHHHHhCCCHHHCCcccEEEEEecCccCCCCCcccCCC
Confidence            4699999999999976532  23589999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEEEcCC--chHHHHHHHHHHHhcCCC--CCCCeeEEEEEeEee
Q 031207          119 GKWIIRFKKV--VSGRFWEDLVRRRLATAS--PPKHICILQQLSIFH  161 (164)
Q Consensus       119 Gkw~i~~~k~--~~d~~We~lll~~IGe~f--~~d~I~Gvvvs~~~~  161 (164)
                      |+|+|++++.  .++++|++|||++|||+|  ..+.|||||+|+|.+
T Consensus       113 G~~~~~i~~~~~~~~~~W~~lll~~IGe~~~~~~~~I~Gi~~s~r~~  159 (213)
T d1ap8a_         113 GKWSFQLRGKGADIDELWLRTLLAVIGETIDEDDSQINGVVLSIRKG  159 (213)
T ss_dssp             EEEEEEECSCCSSSHHHHHHHHHHHTSTTTCSSTTTEEEEEEECCTT
T ss_pred             CEEEEEEccCCCcHHHHHHHHHHHHHhcccccCCCEEeeEEEEecCC
Confidence            9999999765  679999999999999999  455799999998754