Citrus Sinensis ID: 031216

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160---
Protein Sequence
MATLGCQFHCRMHHISQNVKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVSTGSV
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHcccccccccccccccccccEEEEEccccHHHHHHHHHHHcccccEEEEEEccccccccHHHHcccccccccEEEccHHHHHHHHHccccccEEEEccccHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEccccccccccccccEEEEccccccccccEEEEEcccccHHHHHHHHHHcccccEEEEEEEcccccccHHHHccccccccccEcccHHHHHHHHHHcccccEEEEcccHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHHHHHccHEEcccc
Coil and Loop (DISEMBL)
matlgcqfhcrmhhisqnvkakrfiscstnppqsniKVIINGAVKEIGRAAVIAVTKARGMEvagaidshsvgedigmvcdmeqpleipvmSDLTMVLGSISQSKARAVVIDftdastvydnVKQATAFGMRSVVYVPHIQLETVSALSAFcdkasmvstgsv
Flexible Loop (DISEMBL)
MATLGCQFHCRMHHISQNVKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVSTGSV
Low Complexity Region (SEG)
MATLGCQFHCRMHHISQNVKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVSTGSV
Disordered region (IsUnstruct)
***LGCQFHCRMHHISQNVKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCD**********
Disordered Region (DISOPRED)
*************************************VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVSTGS*
Disordered Region (DISEMBL)
MATLGCQFHCRMHHISQNVKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKA********
Disordered Region (DISPRO)
*ATLGCQFHCRMHHISQNVKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVST***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MATLGCQFHCRMHHISQNVKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVSTGSV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	163	2.2.26 [Sep-21-2011]
Q9FJ82	298	Putative 4-hydroxy-tetrah	yes	no	0.938	0.513	0.710	5e-58
B8HRK9	275	4-hydroxy-tetrahydrodipic	yes	no	0.760	0.450	0.409	2e-19
P72642	275	4-hydroxy-tetrahydrodipic	N/A	no	0.754	0.447	0.404	8e-19
B2J0A9	278	4-hydroxy-tetrahydrodipic	yes	no	0.754	0.442	0.372	7e-18
Q8YU19	278	4-hydroxy-tetrahydrodipic	yes	no	0.760	0.446	0.375	8e-18
Q3MFY8	278	4-hydroxy-tetrahydrodipic	yes	no	0.760	0.446	0.367	1e-17
B7KBV6	275	4-hydroxy-tetrahydrodipic	yes	no	0.754	0.447	0.380	4e-17
Q10YI1	275	4-hydroxy-tetrahydrodipic	yes	no	0.760	0.450	0.370	2e-16
Q9S3W8	278	4-hydroxy-tetrahydrodipic	N/A	no	0.760	0.446	0.351	3e-16
B7JW41	275	4-hydroxy-tetrahydrodipic	yes	no	0.748	0.443	0.392	3e-16

>sp|Q9FJ82|DAPB3_ARATH Putative 4-hydroxy-tetrahydrodipicolinate reductase 3, chloroplastic OS=Arabidopsis thaliana GN=DAPB3 PE=2 SV=1

 Score =  223 bits (567), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 113/159 (71%), Positives = 132/159 (83%), Gaps = 6/159 (3%)

Query: 1   MATLGCQFHCRMHHISQNVKAKR-FISCS-TNPPQSNIKVIINGAVKEIGRAAVIAVTKA 58
           MA + C F      +S+++K  R   SCS + P Q+NIKVIINGA KEIGRAAV+AVTKA
Sbjct: 1   MAAVNCHFF----QLSRHLKPSRPSFSCSASQPSQNNIKVIINGAAKEIGRAAVVAVTKA 56

Query: 59  RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDAST 118
           RGME+AGA+D+H VGEDIG++CDME+PLEIPV+SDLTMVLGSISQ K   VVIDFTD ST
Sbjct: 57  RGMELAGAVDNHFVGEDIGLLCDMEEPLEIPVVSDLTMVLGSISQGKEVGVVIDFTDPST 116

Query: 119 VYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASM 157
           VY+NVKQATAFGM+SVVYVP I+ ETVSALSA CDKA+M
Sbjct: 117 VYENVKQATAFGMKSVVYVPRIKPETVSALSALCDKATM 155

Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 3EC: .EC: 1EC: .EC: 2EC: 6

>sp|B8HRK9|DAPB_CYAP4 4-hydroxy-tetrahydrodipicolinate reductase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=dapB PE=3 SV=1

 Score = 94.7 bits (234), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 52/127 (40%), Positives = 79/127 (62%), Gaps = 3/127 (2%)

Query: 33  QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV--GEDIGMVCDMEQPLEIPV 90
           Q  I VI+NGA  ++GR  V AV +A  + + GA+D +    G+DIG V  +  PLE+P+
Sbjct: 4   QGAIPVIVNGAAGKMGREVVKAVAQAADLTLFGAVDRNPSLQGQDIGEVVGI-GPLEVPL 62

Query: 91  MSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSA 150
           ++DL  +L + +Q     V++DFT  ++VYDNV+ A A+G+R VV    +  E +  L+ 
Sbjct: 63  LADLQSLLVAAAQEPQAGVMVDFTHPNSVYDNVRMAIAYGVRPVVGTTGLSPEQIRDLAT 122

Query: 151 FCDKASM 157
           F DKASM
Sbjct: 123 FADKASM 129

Cyanothece sp. (strain PCC 7425 / ATCC 29141) (taxid: 395961)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|P72642|DAPB_SYNY3 4-hydroxy-tetrahydrodipicolinate reductase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=dapB PE=3 SV=1

 Score = 92.8 bits (229), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 51/126 (40%), Positives = 78/126 (61%), Gaps = 3/126 (2%)

Query: 33  QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV--GEDIGMVCDMEQPLEIPV 90
           Q  I V++NGA  ++GR  + AV +A  +++ GA+D +    G+DIG V  +  PLE+PV
Sbjct: 4   QDLIPVVVNGAAGKMGREVIKAVAQAPDLQLVGAVDHNPSLQGQDIGEVVGIA-PLEVPV 62

Query: 91  MSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSA 150
           ++DL  VL   +Q K + V++DFT  S VYDNV+ A A+G+R VV    +  + +  L  
Sbjct: 63  LADLQSVLVLATQEKIQGVMVDFTHPSGVYDNVRSAIAYGVRPVVGTTGLSEQQIQDLGD 122

Query: 151 FCDKAS 156
           F +KAS
Sbjct: 123 FAEKAS 128

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|B2J0A9|DAPB_NOSP7 4-hydroxy-tetrahydrodipicolinate reductase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=dapB PE=3 SV=1

 Score = 89.7 bits (221), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 48/129 (37%), Positives = 78/129 (60%), Gaps = 6/129 (4%)

Query: 33  QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV---GEDIGMVCDMEQPLEIP 89
           Q+ I VI+NGA  ++GR  + AV +A  + + GAID HS+    +D G +  + +PLE+P
Sbjct: 4   QAPIPVIVNGAAGKMGREVIKAVAQAPDLNLVGAID-HSLEHQDKDAGELAGLSEPLEVP 62

Query: 90  VMSDLTMVLGSISQSK--ARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSA 147
           + + L  +LG ++  +     V++DFT   +VYDN++ A A+G+R VV    +  E +  
Sbjct: 63  ITNQLEPMLGYVAGDRQSPPGVIVDFTHPDSVYDNIRSAIAYGIRPVVGTTGLSPEQIQD 122

Query: 148 LSAFCDKAS 156
           L+ F DKAS
Sbjct: 123 LADFADKAS 131

Nostoc punctiforme (strain ATCC 29133 / PCC 73102) (taxid: 63737)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|Q8YU19|DAPB_NOSS1 4-hydroxy-tetrahydrodipicolinate reductase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=dapB PE=3 SV=1

 Score = 89.7 bits (221), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 48/128 (37%), Positives = 76/128 (59%), Gaps = 4/128 (3%)

Query: 33  QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS--HSVGEDIGMVCDMEQPLEIPV 90
           Q+ I VI+NGA  ++GR  V AV +A  + + GAIDS     G+D G +  + +PLE+P+
Sbjct: 4   QAPIPVIVNGAAGKMGREVVKAVAQAPDLNLLGAIDSSPEHQGKDAGELAGLSEPLEVPI 63

Query: 91  MSDLTMVLGSISQSK--ARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSAL 148
            + L  +LG ++  +     V++DFT   +VYDNV+ A A+G+R VV    +    +  L
Sbjct: 64  TNQLEPMLGYVAGERQGPPGVIVDFTHPDSVYDNVRSAIAYGIRPVVGTTGLSPAQIQNL 123

Query: 149 SAFCDKAS 156
           + F +KAS
Sbjct: 124 ADFAEKAS 131

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|Q3MFY8|DAPB_ANAVT 4-hydroxy-tetrahydrodipicolinate reductase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=dapB PE=3 SV=1

 Score = 89.4 bits (220), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 47/128 (36%), Positives = 76/128 (59%), Gaps = 4/128 (3%)

Query: 33  QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS--HSVGEDIGMVCDMEQPLEIPV 90
           Q+ I VI+NGA  ++GR  V A+ +A  + + GAIDS     G+D G +  + +PLE+P+
Sbjct: 4   QAPIPVIVNGAAGKMGREVVKAIAQAPDLNLLGAIDSSPEHQGKDAGELAGLSEPLEVPI 63

Query: 91  MSDLTMVLGSISQSK--ARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSAL 148
            + L  +LG ++  +     V++DFT   +VYDNV+ A A+G+R VV    +    +  L
Sbjct: 64  TNQLEPMLGYVAGERQGPPGVIVDFTHPDSVYDNVRSAIAYGIRPVVGTTGLSPAQIQNL 123

Query: 149 SAFCDKAS 156
           + F +KAS
Sbjct: 124 ADFAEKAS 131

Anabaena variabilis (strain ATCC 29413 / PCC 7937) (taxid: 240292)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|B7KBV6|DAPB_CYAP7 4-hydroxy-tetrahydrodipicolinate reductase OS=Cyanothece sp. (strain PCC 7424) GN=dapB PE=3 SV=1

 Score = 87.0 bits (214), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 48/126 (38%), Positives = 75/126 (59%), Gaps = 3/126 (2%)

Query: 33  QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV--GEDIGMVCDMEQPLEIPV 90
           +S I V++NGA  ++G+  + AV++A  M + GA+D +    GED G V     P+E+P+
Sbjct: 4   ESPIPVVVNGAAGKMGKEVIKAVSQAEDMMLVGAVDLNPKYRGEDAGEVAGC-GPVEVPI 62

Query: 91  MSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSA 150
           + DL  VL   +Q K + V++DFT    VYDN++ A A+G+R VV    +  E +  L  
Sbjct: 63  LDDLQSVLVLATQEKVQGVMVDFTHPDGVYDNIRSAIAYGVRPVVGTTGLSGEQIKDLGE 122

Query: 151 FCDKAS 156
           F +KAS
Sbjct: 123 FAEKAS 128

Cyanothece sp. (strain PCC 7424) (taxid: 65393)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|Q10YI1|DAPB_TRIEI 4-hydroxy-tetrahydrodipicolinate reductase OS=Trichodesmium erythraeum (strain IMS101) GN=dapB PE=3 SV=1

 Score = 85.1 bits (209), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 47/127 (37%), Positives = 76/127 (59%), Gaps = 3/127 (2%)

Query: 33  QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID--SHSVGEDIGMVCDMEQPLEIPV 90
           Q++  VI+ GA  ++GR  +  V  A  M + GAI+     +G+DIG +     PLE+P+
Sbjct: 4   QTSTPVIVCGAAGKMGREVIKTVANASDMTLLGAIECQPEYIGQDIGELIG-SGPLEVPI 62

Query: 91  MSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSA 150
           ++DL  +L   +Q K  AV++DFT   +VY+NV+ A A+G+R VV    +  E +  L+ 
Sbjct: 63  LNDLQGILVMAAQEKQPAVMVDFTHPDSVYENVRSAIAYGVRPVVGTTGLSQEQIQDLAE 122

Query: 151 FCDKASM 157
           F +KAS+
Sbjct: 123 FAEKASI 129

Trichodesmium erythraeum (strain IMS101) (taxid: 203124)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|Q9S3W8|DAPB_MASLA 4-hydroxy-tetrahydrodipicolinate reductase OS=Mastigocladus laminosus GN=dapB PE=3 SV=1

 Score = 84.7 bits (208), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 45/128 (35%), Positives = 74/128 (57%), Gaps = 4/128 (3%)

Query: 33  QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS--VGEDIGMVCDMEQPLEIPV 90
           Q+ I VI+NGA  ++GR  + AV +A  M + GA+D++    G+D G V  + +P E+P+
Sbjct: 4   QTPIPVIVNGAAGKMGRETIKAVVQAADMTLMGAVDTNPEYQGKDAGEVAGLNEPTEVPI 63

Query: 91  MSDLTMVLGSISQSK--ARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSAL 148
              L  +L  ++  +     V++DFT    VYDNV+ A A+G+R VV    +  + +  L
Sbjct: 64  TDQLEPILAYVAGERHLQPGVMVDFTHPDAVYDNVRSAIAYGIRPVVGTTGLSSKQIEQL 123

Query: 149 SAFCDKAS 156
           + F +KAS
Sbjct: 124 ADFAEKAS 131

Mastigocladus laminosus (taxid: 83541)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|B7JW41|DAPB_CYAP8 4-hydroxy-tetrahydrodipicolinate reductase OS=Cyanothece sp. (strain PCC 8801) GN=dapB PE=3 SV=1

 Score = 84.3 bits (207), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 49/125 (39%), Positives = 75/125 (60%), Gaps = 3/125 (2%)

Query: 34  SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS--VGEDIGMVCDMEQPLEIPVM 91
           S I V++NGA  ++GR  V AV +A  M + GA+D +    G+D+G V      LE+P++
Sbjct: 5   SLIPVVVNGAAGKMGREVVKAVAQAEDMMLVGAVDYNPNYRGQDVGEVAGC-GALEVPIV 63

Query: 92  SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAF 151
            DL  +L   +Q K + V++DFT   +VY+NV+ A A+G+R VV    +  E +  L+ F
Sbjct: 64  DDLQSILVLATQEKIQGVMVDFTHPDSVYENVRSAIAYGVRPVVGTTGLTEEQLKDLADF 123

Query: 152 CDKAS 156
            DKAS
Sbjct: 124 ADKAS 128

Cyanothece sp. (strain PCC 8801) (taxid: 41431)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	163
224136862	300	predicted protein [Populus trichocarpa]	0.963	0.523	0.770	6e-66
357444057	173	Dihydrodipicolinate reductase [Medicago	0.987	0.930	0.731	5e-62
449533660	189	PREDICTED: putative dihydrodipicolinate	1.0	0.862	0.717	8e-62
217073426	173	unknown [Medicago truncatula] gi|3884995	0.987	0.930	0.725	2e-61
356575925	301	PREDICTED: putative dihydrodipicolinate	0.963	0.521	0.729	2e-61
357444055	302	Dihydrodipicolinate reductase [Medicago	0.963	0.519	0.731	1e-60
255539549	300	dihydrodipicolinate reductase, putative	0.963	0.523	0.713	1e-60
225455455	302	PREDICTED: putative dihydrodipicolinate	0.957	0.516	0.732	7e-60
449446063	300	PREDICTED: putative dihydrodipicolinate	0.963	0.523	0.713	2e-59
297741105	303	unnamed protein product [Vitis vinifera]	0.957	0.514	0.727	2e-58

>gi|224136862|ref|XP_002322434.1| predicted protein [Populus trichocarpa] gi|222869430|gb|EEF06561.1| predicted protein [Populus trichocarpa]

 Score =  254 bits (650), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 121/157 (77%), Positives = 136/157 (86%)

Query: 1   MATLGCQFHCRMHHISQNVKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARG 60
           MA L C FH  +H +S+NV  + FISCS  P QSNIKV+INGA KEIGRAAVIAVTKARG
Sbjct: 1   MAALSCHFHFTVHKVSKNVITRPFISCSMQPSQSNIKVVINGAAKEIGRAAVIAVTKARG 60

Query: 61  MEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVY 120
           MEVAGA+DSH VGEDIG +CDME+PLEIP+++DLTMVLGSISQSK   VV+DFTD STVY
Sbjct: 61  MEVAGAVDSHFVGEDIGKLCDMEEPLEIPIINDLTMVLGSISQSKETGVVVDFTDPSTVY 120

Query: 121 DNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASM 157
           DNVKQATAFGMRSVVYVP I+L++V ALSAFCDKASM
Sbjct: 121 DNVKQATAFGMRSVVYVPRIKLDSVGALSAFCDKASM 157

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357444057|ref|XP_003592306.1| Dihydrodipicolinate reductase [Medicago truncatula] gi|355481354|gb|AES62557.1| Dihydrodipicolinate reductase [Medicago truncatula]

 Score =  241 bits (616), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 120/164 (73%), Positives = 138/164 (84%), Gaps = 3/164 (1%)

Query: 1   MATLGCQFHCRMHHISQNVKAKR---FISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTK 57
           MA L CQFH   +  SQ VK++     ISCS  P QSNIKV+INGA KEIGRAAV+AVTK
Sbjct: 1   MAALSCQFHSINYLNSQMVKSRSKHSIISCSAQPIQSNIKVVINGAAKEIGRAAVLAVTK 60

Query: 58  ARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDAS 117
           ARGMEVAGAID+  VGEDIG +C M++PLEIP+++DLTMVLGSISQSKA AVV+DFTD S
Sbjct: 61  ARGMEVAGAIDTQHVGEDIGQLCGMDEPLEIPILNDLTMVLGSISQSKATAVVVDFTDPS 120

Query: 118 TVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVSTG 161
            VYDNVKQATAFGM+SVVYVP I+L+TV+ALSAFC+KASMVS G
Sbjct: 121 AVYDNVKQATAFGMKSVVYVPRIKLDTVAALSAFCEKASMVSKG 164

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449533660|ref|XP_004173790.1| PREDICTED: putative dihydrodipicolinate reductase 3, chloroplastic-like [Cucumis sativus]

 Score =  241 bits (615), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 117/163 (71%), Positives = 136/163 (83%)

Query: 1   MATLGCQFHCRMHHISQNVKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARG 60
           MATLGCQF   ++  S+  +    I CS  P Q NIKVIINGA KEIGRAAVIAVTKARG
Sbjct: 1   MATLGCQFPFTVYKNSKKKRPGSSILCSVQPSQGNIKVIINGAAKEIGRAAVIAVTKARG 60

Query: 61  MEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVY 120
           MEVAGA+DSH VGEDIG VCDME+PLE+P+++DLTMVLGSISQSK   VV+DFT+ S VY
Sbjct: 61  MEVAGAVDSHCVGEDIGKVCDMEEPLELPILNDLTMVLGSISQSKETGVVVDFTEPSKVY 120

Query: 121 DNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVSTGSV 163
           +NVKQATAFGMRSVVYVP ++++TV+ALS FC+KASMVSTG V
Sbjct: 121 ENVKQATAFGMRSVVYVPRLKVDTVAALSNFCEKASMVSTGVV 163

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217073426|gb|ACJ85072.1| unknown [Medicago truncatula] gi|388499538|gb|AFK37835.1| unknown [Medicago truncatula]

 Score =  239 bits (611), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 119/164 (72%), Positives = 137/164 (83%), Gaps = 3/164 (1%)

Query: 1   MATLGCQFHCRMHHISQNVKAKR---FISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTK 57
           MA L CQFH   +  SQ VK++     ISCS  P QSNIKV+INGA KEIGRAAV+AVTK
Sbjct: 1   MAALSCQFHSINYLNSQMVKSRSKHSIISCSAQPIQSNIKVVINGAAKEIGRAAVLAVTK 60

Query: 58  ARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDAS 117
           ARGMEVAGAID+  VGEDIG +C M++PLEIP+++DLTMVLGSI QSKA AVV+DFTD S
Sbjct: 61  ARGMEVAGAIDTQHVGEDIGQLCGMDEPLEIPILNDLTMVLGSIPQSKATAVVVDFTDPS 120

Query: 118 TVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVSTG 161
            VYDNVKQATAFGM+SVVYVP I+L+TV+ALSAFC+KASMVS G
Sbjct: 121 AVYDNVKQATAFGMKSVVYVPRIKLDTVAALSAFCEKASMVSKG 164

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356575925|ref|XP_003556086.1| PREDICTED: putative dihydrodipicolinate reductase 3, chloroplastic-like [Glycine max]

 Score =  239 bits (611), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 116/159 (72%), Positives = 136/159 (85%), Gaps = 2/159 (1%)

Query: 1   MATLGCQFHCRMHHISQNV--KAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKA 58
           MA+L CQFH      S+NV  + KRFI CS  P Q+NIKV+INGA KEIGRAAV+AVTKA
Sbjct: 1   MASLSCQFHSTSLLNSKNVNRRRKRFIFCSAQPTQNNIKVVINGATKEIGRAAVVAVTKA 60

Query: 59  RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDAST 118
           RGMEVAGA+D+  VGEDIG +C ME+PLEIP+++DLTM+LGSISQSKA  VV+DFTD S+
Sbjct: 61  RGMEVAGAVDTCHVGEDIGKICGMEEPLEIPIINDLTMILGSISQSKAAGVVVDFTDPSS 120

Query: 119 VYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASM 157
           VYDNVKQATAFGM+SVVYVP I+L+TV+ALSAFCDKASM
Sbjct: 121 VYDNVKQATAFGMKSVVYVPQIKLDTVAALSAFCDKASM 159

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357444055|ref|XP_003592305.1| Dihydrodipicolinate reductase [Medicago truncatula] gi|355481353|gb|AES62556.1| Dihydrodipicolinate reductase [Medicago truncatula]

 Score =  237 bits (605), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 117/160 (73%), Positives = 135/160 (84%), Gaps = 3/160 (1%)

Query: 1   MATLGCQFHCRMHHISQNVKAKR---FISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTK 57
           MA L CQFH   +  SQ VK++     ISCS  P QSNIKV+INGA KEIGRAAV+AVTK
Sbjct: 1   MAALSCQFHSINYLNSQMVKSRSKHSIISCSAQPIQSNIKVVINGAAKEIGRAAVLAVTK 60

Query: 58  ARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDAS 117
           ARGMEVAGAID+  VGEDIG +C M++PLEIP+++DLTMVLGSISQSKA AVV+DFTD S
Sbjct: 61  ARGMEVAGAIDTQHVGEDIGQLCGMDEPLEIPILNDLTMVLGSISQSKATAVVVDFTDPS 120

Query: 118 TVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASM 157
            VYDNVKQATAFGM+SVVYVP I+L+TV+ALSAFC+KASM
Sbjct: 121 AVYDNVKQATAFGMKSVVYVPRIKLDTVAALSAFCEKASM 160

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539549|ref|XP_002510839.1| dihydrodipicolinate reductase, putative [Ricinus communis] gi|223549954|gb|EEF51441.1| dihydrodipicolinate reductase, putative [Ricinus communis]

 Score =  237 bits (604), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 112/157 (71%), Positives = 132/157 (84%)

Query: 1   MATLGCQFHCRMHHISQNVKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARG 60
           MA L C     +     NVKAK FI CS  P +SNIKV++NGA KEIGRAAVIAVTKARG
Sbjct: 1   MAALSCHLQFTVSKGCSNVKAKPFIFCSAQPAKSNIKVVVNGAAKEIGRAAVIAVTKARG 60

Query: 61  MEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVY 120
           MEVAGA+D+H VGED+G++CDME+PLEIPV++DLTMVLGSISQSK   VVIDFTD STVY
Sbjct: 61  MEVAGAVDTHFVGEDVGLLCDMEEPLEIPVINDLTMVLGSISQSKETGVVIDFTDPSTVY 120

Query: 121 DNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASM 157
           DNVKQATAFGM+S+VYVP I+++T++ALSA C+KASM
Sbjct: 121 DNVKQATAFGMKSIVYVPRIKVDTIAALSALCEKASM 157

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225455455|ref|XP_002274702.1| PREDICTED: putative dihydrodipicolinate reductase 3, chloroplastic [Vitis vinifera] gi|147816661|emb|CAN68386.1| hypothetical protein VITISV_012454 [Vitis vinifera]

 Score =  234 bits (598), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 115/157 (73%), Positives = 133/157 (84%), Gaps = 1/157 (0%)

Query: 2   ATLGCQFHCRMHHISQNVKAKRFISCS-TNPPQSNIKVIINGAVKEIGRAAVIAVTKARG 60
           A L  QFH   +   +NVK K+ +SCS   P QSNIKV+INGA KEIGRAAV+AVTKARG
Sbjct: 3   AALSSQFHPTTYRSIKNVKTKQLVSCSMQQPSQSNIKVVINGAAKEIGRAAVVAVTKARG 62

Query: 61  MEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVY 120
           MEVAGA+DSH VGEDIGMVC ME+ LE+P+++DLTMVLGSISQSKA  VV+DFTD STVY
Sbjct: 63  MEVAGAVDSHLVGEDIGMVCGMEEALEMPIINDLTMVLGSISQSKATGVVVDFTDPSTVY 122

Query: 121 DNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASM 157
           +NVKQATAFGM SVVYVP I+L+TV+ALSAFC+KASM
Sbjct: 123 ENVKQATAFGMNSVVYVPRIKLDTVTALSAFCEKASM 159

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449446063|ref|XP_004140791.1| PREDICTED: putative dihydrodipicolinate reductase 3, chloroplastic-like [Cucumis sativus]

 Score =  233 bits (595), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 112/157 (71%), Positives = 131/157 (83%)

Query: 1   MATLGCQFHCRMHHISQNVKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARG 60
           MATLGCQF   ++  S+  +    I CS  P Q NIKVIINGA KEIGRAAVIAVTKARG
Sbjct: 1   MATLGCQFPFTVYKNSKKKRPGSSILCSVQPSQGNIKVIINGAAKEIGRAAVIAVTKARG 60

Query: 61  MEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVY 120
           MEVAGA+DSH VGEDIG VCDME+PLE+P+++DLTMVLGSISQSK   VV+DFT+ S VY
Sbjct: 61  MEVAGAVDSHCVGEDIGKVCDMEEPLELPILNDLTMVLGSISQSKETGVVVDFTEPSKVY 120

Query: 121 DNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASM 157
           +NVKQATAFGMRSVVYVP ++++TV+ALS FC+KASM
Sbjct: 121 ENVKQATAFGMRSVVYVPRLKVDTVAALSNFCEKASM 157

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297741105|emb|CBI31836.3| unnamed protein product [Vitis vinifera]

 Score =  230 bits (586), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 115/158 (72%), Positives = 133/158 (84%), Gaps = 2/158 (1%)

Query: 2   ATLGCQFHCRMHHISQNVKAKRFISCS-TNPPQSNIKVIINGAVKEIGRAAVIAVTKARG 60
           A L  QFH   +   +NVK K+ +SCS   P QSNIKV+INGA KEIGRAAV+AVTKARG
Sbjct: 3   AALSSQFHPTTYRSIKNVKTKQLVSCSMQQPSQSNIKVVINGAAKEIGRAAVVAVTKARG 62

Query: 61  MEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSIS-QSKARAVVIDFTDASTV 119
           MEVAGA+DSH VGEDIGMVC ME+ LE+P+++DLTMVLGSIS QSKA  VV+DFTD STV
Sbjct: 63  MEVAGAVDSHLVGEDIGMVCGMEEALEMPIINDLTMVLGSISQQSKATGVVVDFTDPSTV 122

Query: 120 YDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASM 157
           Y+NVKQATAFGM SVVYVP I+L+TV+ALSAFC+KASM
Sbjct: 123 YENVKQATAFGMNSVVYVPRIKLDTVTALSAFCEKASM 160

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	163
TAIR|locus:2173043	298	CRR1 "chlororespiration reduct	0.914	0.5	0.728	8e-53

TAIR|locus:2173043 CRR1 "chlororespiration reduction 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 547 (197.6 bits), Expect = 8.0e-53, P = 8.0e-53
 Identities = 110/151 (72%), Positives = 129/151 (85%)

Query:     9 HCRMHHISQNVKAKR-FISCSTNPP-QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGA 66
             +C    +S+++K  R   SCS + P Q+NIKVIINGA KEIGRAAV+AVTKARGME+AGA
Sbjct:     5 NCHFFQLSRHLKPSRPSFSCSASQPSQNNIKVIINGAAKEIGRAAVVAVTKARGMELAGA 64

Query:    67 IDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQA 126
             +D+H VGEDIG++CDME+PLEIPV+SDLTMVLGSISQ K   VVIDFTD STVY+NVKQA
Sbjct:    65 VDNHFVGEDIGLLCDMEEPLEIPVVSDLTMVLGSISQGKEVGVVIDFTDPSTVYENVKQA 124

Query:   127 TAFGMRSVVYVPHIQLETVSALSAFCDKASM 157
             TAFGM+SVVYVP I+ ETVSALSA CDKA+M
Sbjct:   125 TAFGMKSVVYVPRIKPETVSALSALCDKATM 155


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.130   0.367    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      163       163   0.00084  107 3  11 22  0.47    31
                                                     30  0.44    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  562 (60 KB)
  Total size of DFA:  127 KB (2081 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.65u 0.10s 14.75t   Elapsed:  00:00:01
  Total cpu time:  14.65u 0.10s 14.75t   Elapsed:  00:00:01
  Start:  Fri May 10 16:20:11 2013   End:  Fri May 10 16:20:12 2013

GO:0000166 "nucleotide binding" evidence=IEA

GO:0008839 "4-hydroxy-tetrahydrodipicolinate reductase" evidence=IEA;IGI;ISS

GO:0009089 "lysine biosynthetic process via diaminopimelate" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0070402 "NADPH binding" evidence=IEA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0019684 "photosynthesis, light reaction" evidence=IMP

GO:0009773 "photosynthetic electron transport in photosystem I" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0016556 "mRNA modification" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FJ82	DAPB3_ARATH	1, ., 3, ., 1, ., 2, 6	0.7106	0.9386	0.5134	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pm.C_LG_XV0419	hypothetical protein (301 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	grail3.0035005702	dihydrodipicolinate synthase (EC-4.2.1.52) (363 aa)	•					•	•		0.977
	estExt_fgenesh4_pg.C_LG_II1351	dihydrodipicolinate synthase (EC-4.2.1.52) (366 aa)	•					•	•		0.971
	gw1.IX.2730.1	SubName- Full=Putative uncharacterized protein; (406 aa)						•	•		0.907
	estExt_Genewise1_v1.C_LG_II0973	hypothetical protein (397 aa)						•	•		0.906
	fgenesh4_pm.C_scaffold_57000049	hypothetical protein (397 aa)						•	•		0.905
	fgenesh4_pg.C_LG_VII001193	hypothetical protein (397 aa)						•	•		0.904
	gw1.9962.1.1	hypothetical protein (394 aa)						•	•		0.904
	estExt_Genewise1_v1.C_1700073	dihydrodipicolinate reductase (EC-1.3.1.26) (283 aa)						•	•		0.850
	gw1.XVI.3802.1	diaminopimelate epimerase (EC-5.1.1.7) (281 aa)							•		0.571
	eugene3.00090483	diaminopimelate decarboxylase (EC-4.1.1.20) (482 aa)	•						•		0.523

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	163
TIGR00036	266	TIGR00036, dapB, dihydrodipicolinate reductase	5e-14
pfam01113	122	pfam01113, DapB_N, Dihydrodipicolinate reductase,	9e-11
COG0289	266	COG0289, DapB, Dihydrodipicolinate reductase [Amin	6e-10
PRK00048	257	PRK00048, PRK00048, dihydrodipicolinate reductase;	3e-09

>gnl|CDD|129147 TIGR00036, dapB, dihydrodipicolinate reductase

 Score = 67.0 bits (164), Expect = 5e-14
 Identities = 35/125 (28%), Positives = 54/125 (43%), Gaps = 10/125 (8%)

Query: 35  NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS---VGEDIGMVCDMEQPLEIPVM 91
            IKV + GA   +GR  + A   A G+++  A + H     G D G +  +   + +PV 
Sbjct: 1   TIKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGI-GKVGVPVT 59

Query: 92  SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAF 151
            DL       +      V+IDFT    V +++K A   G+R VV       E    L+  
Sbjct: 60  DDLE------AVETDPDVLIDFTTPEGVLNHLKFALEHGVRLVVGTTGFSEEDKQELADL 113

Query: 152 CDKAS 156
            +KA 
Sbjct: 114 AEKAG 118

[Amino acid biosynthesis, Aspartate family]. Length = 266

>gnl|CDD|216304 pfam01113, DapB_N, Dihydrodipicolinate reductase, N-terminus

 Score = 55.7 bits (135), Expect = 9e-11
 Identities = 31/103 (30%), Positives = 46/103 (44%), Gaps = 12/103 (11%)

Query: 36  IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID---SHSVGEDIGMVCDMEQPLEIPVMS 92
           IKV + GA   +GR  + A+ +A   E+  A+D   S  +G D G +        +PV  
Sbjct: 1   IKVAVVGASGRMGRELIKAILEAPDFELVAAVDRPGSSLLGSDAGELAGPL---GVPVTD 57

Query: 93  DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVV 135
           DL  VL          V+IDFT      +N++ A   G   V+
Sbjct: 58  DLEEVLADAD------VLIDFTTPEATLENLELALKHGKPLVI 94

Dihydrodipicolinate reductase (DapB) reduces the alpha,beta-unsaturated cyclic imine, dihydro-dipicolinate. This reaction is the second committed step in the biosynthesis of L-lysine and its precursor meso-diaminopimelate, which are critical for both protein and cell wall biosynthesis. The N-terminal domain of DapB binds the dinucleotide NADPH. Length = 122

>gnl|CDD|223366 COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]

 Score = 55.7 bits (135), Expect = 6e-10
 Identities = 34/105 (32%), Positives = 50/105 (47%), Gaps = 10/105 (9%)

Query: 34  SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID---SHSVGEDIGMVCDMEQPLEIPV 90
           S IKV + GA   +GR  + AV +A  +E+  A D   S S+G D G +  +   L +PV
Sbjct: 1   SMIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLSLGSDAGELAGLG-LLGVPV 59

Query: 91  MSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVV 135
             DL +V           V+IDFT      +N++ A   G   V+
Sbjct: 60  TDDLLLVK------ADADVLIDFTTPEATLENLEFALEHGKPLVI 98

Length = 266

>gnl|CDD|234595 PRK00048, PRK00048, dihydrodipicolinate reductase; Provisional

 Score = 54.0 bits (131), Expect = 3e-09
 Identities = 26/100 (26%), Positives = 39/100 (39%), Gaps = 12/100 (12%)

Query: 36  IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLT 95
           IKV + GA   +GR  + AV  A  +E+  A+D                   + +  DL 
Sbjct: 2   IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQGALG------VAITDDLE 55

Query: 96  MVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVV 135
            VL          V+IDFT      +N++ A   G   V+
Sbjct: 56  AVLADAD------VLIDFTTPEATLENLEFALEHGKPLVI 89

Length = 257

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	163
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	99.97
COG0289	266	DapB Dihydrodipicolinate reductase [Amino acid tra	99.95
TIGR00036	266	dapB dihydrodipicolinate reductase.	99.92
PLN02775	286	Probable dihydrodipicolinate reductase	99.91
TIGR02130	275	dapB_plant dihydrodipicolinate reductase. This nar	99.9
PRK00048	257	dihydrodipicolinate reductase; Provisional	99.88
PF01408	120	GFO_IDH_MocA: Oxidoreductase family, NAD-binding R	99.77
PRK13303	265	L-aspartate dehydrogenase; Provisional	99.71
COG0673	342	MviM Predicted dehydrogenases and related proteins	99.66
PRK11579	346	putative oxidoreductase; Provisional	99.66
PRK10206	344	putative oxidoreductase; Provisional	99.59
COG4091	438	Predicted homoserine dehydrogenase [Amino acid tra	99.57
PRK13304	265	L-aspartate dehydrogenase; Reviewed	99.56
TIGR01761	343	thiaz-red thiazolinyl imide reductase. This reduct	99.52
PRK13302	271	putative L-aspartate dehydrogenase; Provisional	99.46
PRK06270	341	homoserine dehydrogenase; Provisional	99.45
PRK06349	426	homoserine dehydrogenase; Provisional	99.43
KOG2741	351	consensus Dimeric dihydrodiol dehydrogenase [Carbo	99.42
TIGR01921	324	DAP-DH diaminopimelate dehydrogenase. This model r	99.41
PF03447	117	NAD_binding_3: Homoserine dehydrogenase, NAD bindi	99.36
PRK13301	267	putative L-aspartate dehydrogenase; Provisional	99.31
PRK04207	341	glyceraldehyde-3-phosphate dehydrogenase; Provisio	99.3
PRK08374	336	homoserine dehydrogenase; Provisional	99.27
TIGR03215	285	ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati	99.24
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	99.21
PRK08300	302	acetaldehyde dehydrogenase; Validated	99.2
COG1712	255	Predicted dinucleotide-utilizing enzyme [General f	99.16
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	99.14
PRK00436	343	argC N-acetyl-gamma-glutamyl-phosphate reductase;	99.11
COG3804	350	Uncharacterized conserved protein related to dihyd	99.03
PRK06392	326	homoserine dehydrogenase; Provisional	99.01
TIGR03855	229	NAD_NadX aspartate dehydrogenase. Members of this	98.95
PRK06813	346	homoserine dehydrogenase; Validated	98.8
TIGR01850	346	argC N-acetyl-gamma-glutamyl-phosphate reductase,	98.77
PF02629	96	CoA_binding: CoA binding domain; InterPro: IPR0037	98.76
PRK08664	349	aspartate-semialdehyde dehydrogenase; Reviewed	98.73
TIGR00978	341	asd_EA aspartate-semialdehyde dehydrogenase (non-p	98.73
COG0460	333	ThrA Homoserine dehydrogenase [Amino acid transpor	98.69
PLN02968	381	Probable N-acetyl-gamma-glutamyl-phosphate reducta	98.64
PRK14874	334	aspartate-semialdehyde dehydrogenase; Provisional	98.62
PTZ00187	317	succinyl-CoA synthetase alpha subunit; Provisional	98.58
PRK05671	336	aspartate-semialdehyde dehydrogenase; Reviewed	98.58
COG0002	349	ArgC Acetylglutamate semialdehyde dehydrogenase [A	98.58
PRK11863	313	N-acetyl-gamma-glutamyl-phosphate reductase; Provi	98.57
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	98.57
smart00846	149	Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase,	98.57
PLN02383	344	aspartate semialdehyde dehydrogenase	98.56
COG0074	293	SucD Succinyl-CoA synthetase, alpha subunit [Energ	98.55
PF00044	151	Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase,	98.55
TIGR01546	333	GAPDH-II_archae glyceraldehyde-3-phosphate dehydro	98.55
PRK05678	291	succinyl-CoA synthetase subunit alpha; Validated	98.52
PRK08040	336	putative semialdehyde dehydrogenase; Provisional	98.52
TIGR01019	286	sucCoAalpha succinyl-CoA synthetase, alpha subunit	98.51
COG0057	335	GapA Glyceraldehyde-3-phosphate dehydrogenase/eryt	98.5
smart00859	122	Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin	98.48
PRK09436	819	thrA bifunctional aspartokinase I/homoserine dehyd	98.46
PLN00125	300	Succinyl-CoA ligase [GDP-forming] subunit alpha	98.45
TIGR01851	310	argC_other N-acetyl-gamma-glutamyl-phosphate reduc	98.45
PLN02700	377	homoserine dehydrogenase family protein	98.44
PRK09466	810	metL bifunctional aspartate kinase II/homoserine d	98.4
PF13380	116	CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5	98.39
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	98.37
PRK05472	213	redox-sensing transcriptional repressor Rex; Provi	98.34
PRK07634	245	pyrroline-5-carboxylate reductase; Reviewed	98.33
PRK06728	347	aspartate-semialdehyde dehydrogenase; Provisional	98.32
TIGR01296	339	asd_B aspartate-semialdehyde dehydrogenase (peptid	98.3
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	98.28
PLN02358	338	glyceraldehyde-3-phosphate dehydrogenase	98.25
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	98.24
PRK08955	334	glyceraldehyde-3-phosphate dehydrogenase; Validate	98.23
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	98.22
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	98.2
PRK06598	369	aspartate-semialdehyde dehydrogenase; Reviewed	98.13
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	98.12
PRK05447	385	1-deoxy-D-xylulose 5-phosphate reductoisomerase; P	98.11
PTZ00023	337	glyceraldehyde-3-phosphate dehydrogenase; Provisio	98.09
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	98.08
PRK06476	258	pyrroline-5-carboxylate reductase; Reviewed	98.08
COG0136	334	Asd Aspartate-semialdehyde dehydrogenase [Amino ac	98.05
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	98.05
TIGR01532	325	E4PD_g-proteo D-erythrose-4-phosphate dehydrogenas	98.03
PLN02688	266	pyrroline-5-carboxylate reductase	98.01
TIGR03450	351	mycothiol_INO1 inositol 1-phosphate synthase, Acti	98.0
PRK06928	277	pyrroline-5-carboxylate reductase; Reviewed	98.0
TIGR02717	447	AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP	97.99
COG2344	211	AT-rich DNA-binding protein [General function pred	97.95
PRK07729	343	glyceraldehyde-3-phosphate dehydrogenase; Validate	97.93
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	97.93
PRK07679	279	pyrroline-5-carboxylate reductase; Reviewed	97.93
PLN03096	395	glyceraldehyde-3-phosphate dehydrogenase A; Provis	97.93
cd01076	227	NAD_bind_1_Glu_DH NAD(P) binding domain of glutama	97.92
PLN02237	442	glyceraldehyde-3-phosphate dehydrogenase B	97.91
PRK15425	331	gapA glyceraldehyde-3-phosphate dehydrogenase A; P	97.89
PRK07403	337	glyceraldehyde-3-phosphate dehydrogenase; Reviewed	97.87
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	97.86
PRK13535	336	erythrose 4-phosphate dehydrogenase; Provisional	97.85
PRK07680	273	late competence protein ComER; Validated	97.84
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	97.83
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	97.82
COG0345	266	ProC Pyrroline-5-carboxylate reductase [Amino acid	97.81
COG1023	300	Gnd Predicted 6-phosphogluconate dehydrogenase [Ca	97.81
PRK15059	292	tartronate semialdehyde reductase; Provisional	97.77
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	97.74
PTZ00431	260	pyrroline carboxylate reductase; Provisional	97.71
COG4693	361	PchG Oxidoreductase (NAD-binding), involved in sid	97.69
PF07755	301	DUF1611: Protein of unknown function (DUF1611); In	97.69
COG3367	339	Uncharacterized conserved protein [Function unknow	97.66
COG2910	211	Putative NADH-flavin reductase [General function p	97.66
PTZ00434	361	cytosolic glyceraldehyde 3-phosphate dehydrogenase	97.65
PRK12491	272	pyrroline-5-carboxylate reductase; Reviewed	97.65
PRK08618	325	ornithine cyclodeaminase; Validated	97.62
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	97.62
PLN02712	667	arogenate dehydrogenase	97.6
PLN02272	421	glyceraldehyde-3-phosphate dehydrogenase	97.6
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	97.58
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	97.57
TIGR00715	256	precor6x_red precorrin-6x reductase. This enzyme w	97.55
PLN02256	304	arogenate dehydrogenase	97.53
PLN02712	667	arogenate dehydrogenase	97.49
TIGR01692	288	HIBADH 3-hydroxyisobutyrate dehydrogenase. This en	97.47
PRK09414	445	glutamate dehydrogenase; Provisional	97.4
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.39
PRK08655	437	prephenate dehydrogenase; Provisional	97.39
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.39
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	97.37
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	97.36
PLN02696	454	1-deoxy-D-xylulose-5-phosphate reductoisomerase	97.35
PLN02350	493	phosphogluconate dehydrogenase (decarboxylating)	97.35
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	97.31
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	97.29
PRK08289	477	glyceraldehyde-3-phosphate dehydrogenase; Reviewed	97.29
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	97.26
PF04321	286	RmlD_sub_bind: RmlD substrate binding domain; Inte	97.26
KOG4354	340	consensus N-acetyl-gamma-glutamyl-phosphate reduct	97.25
TIGR00873	467	gnd 6-phosphogluconate dehydrogenase, decarboxylat	97.25
PTZ00345	365	glycerol-3-phosphate dehydrogenase; Provisional	97.25
PRK06046	326	alanine dehydrogenase; Validated	97.23
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	97.23
COG1810	224	Uncharacterized protein conserved in archaea [Func	97.23
TIGR01534	327	GAPDH-I glyceraldehyde-3-phosphate dehydrogenase,	97.23
CHL00194	317	ycf39 Ycf39; Provisional	97.19
KOG1255	329	consensus Succinyl-CoA synthetase, alpha subunit [	97.18
PTZ00353	342	glycosomal glyceraldehyde-3-phosphate dehydrogenas	97.16
PRK07417	279	arogenate dehydrogenase; Reviewed	97.13
TIGR02371	325	ala_DH_arch alanine dehydrogenase, Archaeoglobus f	97.13
KOG0409	327	consensus Predicted dehydrogenase [General functio	97.11
PRK08223	287	hypothetical protein; Validated	97.1
PRK05479	330	ketol-acid reductoisomerase; Provisional	97.09
KOG1502	327	consensus Flavonol reductase/cinnamoyl-CoA reducta	97.09
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	97.07
TIGR03376	342	glycerol3P_DH glycerol-3-phosphate dehydrogenase (	97.06
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	97.04
TIGR00465	314	ilvC ketol-acid reductoisomerase. This is the seco	97.03
cd05313	254	NAD_bind_2_Glu_DH NAD(P) binding domain of glutama	97.02
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	97.02
COG1091	281	RfbD dTDP-4-dehydrorhamnose reductase [Cell envelo	97.02
PLN02858	1378	fructose-bisphosphate aldolase	97.01
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	97.01
PRK11908	347	NAD-dependent epimerase/dehydratase family protein	97.01
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	97.0
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	96.99
PLN02858	1378	fructose-bisphosphate aldolase	96.97
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.96
PRK08507	275	prephenate dehydrogenase; Validated	96.96
PRK07340	304	ornithine cyclodeaminase; Validated	96.92
TIGR00243	389	Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomeras	96.9
PRK08605	332	D-lactate dehydrogenase; Validated	96.9
COG0240	329	GpsA Glycerol-3-phosphate dehydrogenase [Energy pr	96.89
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	96.89
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	96.88
PF00208	244	ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Val	96.83
PRK11150	308	rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Pro	96.83
PLN02427	386	UDP-apiose/xylose synthase	96.83
PRK12439	341	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	96.82
TIGR01745	366	asd_gamma aspartate-semialdehyde dehydrogenase, ga	96.79
PRK06545	359	prephenate dehydrogenase; Validated	96.77
COG1832	140	Predicted CoA-binding protein [General function pr	96.77
PLN03139	386	formate dehydrogenase; Provisional	96.77
PLN02477	410	glutamate dehydrogenase	96.77
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	96.76
TIGR01214	287	rmlD dTDP-4-dehydrorhamnose reductase. This enzyme	96.76
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.73
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	96.73
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	96.73
COG2099	257	CobK Precorrin-6x reductase [Coenzyme metabolism]	96.72
PLN00016	378	RNA-binding protein; Provisional	96.72
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.71
TIGR03649	285	ergot_EASG ergot alkaloid biosynthesis protein, AF	96.7
PRK06141	314	ornithine cyclodeaminase; Validated	96.68
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	96.67
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	96.67
PTZ00079	454	NADP-specific glutamate dehydrogenase; Provisional	96.67
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	96.66
KOG0455	364	consensus Homoserine dehydrogenase [Amino acid tra	96.64
PRK07574	385	formate dehydrogenase; Provisional	96.64
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	96.63
PRK08818	370	prephenate dehydrogenase; Provisional	96.63
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	96.63
PF02670	129	DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate re	96.62
PLN02778	298	3,5-epimerase/4-reductase	96.6
PRK06436	303	glycerate dehydrogenase; Provisional	96.59
PRK08328	231	hypothetical protein; Provisional	96.59
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	96.59
PLN02166	436	dTDP-glucose 4,6-dehydratase	96.58
PRK09987	299	dTDP-4-dehydrorhamnose reductase; Provisional	96.58
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	96.57
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.57
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.56
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	96.54
PLN02695	370	GDP-D-mannose-3',5'-epimerase	96.51
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	96.49
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	96.49
PLN02353	473	probable UDP-glucose 6-dehydrogenase	96.49
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	96.48
PRK14806	735	bifunctional cyclohexadienyl dehydrogenase/ 3-phos	96.48
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	96.47
COG4569	310	MhpF Acetaldehyde dehydrogenase (acetylating) [Sec	96.45
KOG2742	367	consensus Predicted oxidoreductase [General functi	96.43
PRK08125	660	bifunctional UDP-glucuronic acid decarboxylase/UDP	96.41
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	96.4
PLN02522	608	ATP citrate (pro-S)-lyase	96.39
PLN02206	442	UDP-glucuronate decarboxylase	96.38
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	96.38
PRK07411	390	hypothetical protein; Validated	96.37
PLN02494	477	adenosylhomocysteinase	96.37
PRK13243	333	glyoxylate reductase; Reviewed	96.37
PF07991	165	IlvN: Acetohydroxy acid isomeroreductase, catalyti	96.36
PRK08291	330	ectoine utilization protein EutC; Validated	96.35
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.34
TIGR02992	326	ectoine_eutC ectoine utilization protein EutC. Mem	96.34
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	96.33
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	96.33
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	96.3
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	96.29
PF01073	280	3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/iso	96.27
PRK12480	330	D-lactate dehydrogenase; Provisional	96.27
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	96.24
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	96.24
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	96.22
PRK13403	335	ketol-acid reductoisomerase; Provisional	96.21
COG1260	362	INO1 Myo-inositol-1-phosphate synthase [Lipid meta	96.19
PRK06444	197	prephenate dehydrogenase; Provisional	96.18
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	96.18
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	96.17
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.16
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.14
COG0300	265	DltE Short-chain dehydrogenases of various substra	96.13
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	96.12
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	96.1
PTZ00075	476	Adenosylhomocysteinase; Provisional	96.1
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	96.08
PRK10124	463	putative UDP-glucose lipid carrier transferase; Pr	96.05
TIGR03570	201	NeuD_NnaD sugar O-acyltransferase, sialic acid O-a	96.05
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	96.04
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	96.02
COG1087	329	GalE UDP-glucose 4-epimerase [Cell envelope biogen	96.01
COG1086	588	Predicted nucleoside-diphosphate sugar epimerases	95.99
PRK06091	555	membrane protein FdrA; Validated	95.97
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	95.96
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	95.96
TIGR02197	314	heptose_epim ADP-L-glycero-D-manno-heptose-6-epime	95.95
PRK10217	355	dTDP-glucose 4,6-dehydratase; Provisional	95.94
PLN00198	338	anthocyanidin reductase; Provisional	95.93
TIGR03466	328	HpnA hopanoid-associated sugar epimerase. The sequ	95.92
cd01491	286	Ube1_repeat1 Ubiquitin activating enzyme (E1), rep	95.91
PRK14030	445	glutamate dehydrogenase; Provisional	95.91
COG0334	411	GdhA Glutamate dehydrogenase/leucine dehydrogenase	95.9
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	95.9
TIGR03023	451	WcaJ_sugtrans Undecaprenyl-phosphate glucose phosp	95.9
TIGR03025	445	EPS_sugtrans exopolysaccharide biosynthesis polypr	95.89
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.89
PRK15181	348	Vi polysaccharide biosynthesis protein TviC; Provi	95.89
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	95.87
PLN02214	342	cinnamoyl-CoA reductase	95.86
TIGR01181	317	dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This	95.84
PRK05086	312	malate dehydrogenase; Provisional	95.78
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	95.78
PRK05993	277	short chain dehydrogenase; Provisional	95.78
PTZ00082	321	L-lactate dehydrogenase; Provisional	95.78
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	95.75
PRK04663	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.75
PRK14851	679	hypothetical protein; Provisional	95.72
COG1179	263	Dinucleotide-utilizing enzymes involved in molybdo	95.71
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	95.67
PRK14852	989	hypothetical protein; Provisional	95.67
cd01336	325	MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli	95.64
KOG1198	347	consensus Zinc-binding oxidoreductase [Energy prod	95.63
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	95.62
PLN02260	668	probable rhamnose biosynthetic enzyme	95.61
PRK06407	301	ornithine cyclodeaminase; Provisional	95.59
PRK08306	296	dipicolinate synthase subunit A; Reviewed	95.56
PRK05693	274	short chain dehydrogenase; Provisional	95.52
KOG0069	336	consensus Glyoxylate/hydroxypyruvate reductase (D-	95.51
PRK14031	444	glutamate dehydrogenase; Provisional	95.5
PLN03209	576	translocon at the inner envelope of chloroplast su	95.5
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.49
PTZ00117	319	malate dehydrogenase; Provisional	95.48
PRK15116	268	sulfur acceptor protein CsdL; Provisional	95.45
PRK06932	314	glycerate dehydrogenase; Provisional	95.44
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	95.43
PRK07877	722	hypothetical protein; Provisional	95.42
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	95.4
KOG2380	480	consensus Prephenate dehydrogenase (NADP+) [Amino	95.39
PF10087	97	DUF2325: Uncharacterized protein conserved in bact	95.39
PTZ00325	321	malate dehydrogenase; Provisional	95.38
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	95.36
PRK06901	322	aspartate-semialdehyde dehydrogenase; Provisional	95.36
cd01489	312	Uba2_SUMO Ubiquitin activating enzyme (E1) subunit	95.35
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.34
PLN02650	351	dihydroflavonol-4-reductase	95.33
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	95.33
PRK10675	338	UDP-galactose-4-epimerase; Provisional	95.32
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	95.32
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	95.32
TIGR01777	292	yfcH conserved hypothetical protein TIGR01777. Thi	95.31
PLN02260	668	probable rhamnose biosynthetic enzyme	95.31
PRK06182	273	short chain dehydrogenase; Validated	95.26
COG3268	382	Uncharacterized conserved protein [Function unknow	95.25
PRK06199	379	ornithine cyclodeaminase; Validated	95.23
KOG2017	427	consensus Molybdopterin synthase sulfurylase [Coen	95.2
PRK15409	323	bifunctional glyoxylate/hydroxypyruvate reductase	95.16
COG0743	385	Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomeras	95.16
TIGR01179	328	galE UDP-glucose-4-epimerase. This enzyme intercon	95.13
PRK08057	248	cobalt-precorrin-6x reductase; Reviewed	95.13
PLN02986	322	cinnamyl-alcohol dehydrogenase family protein	95.12
PRK12464	383	1-deoxy-D-xylulose 5-phosphate reductoisomerase; P	95.11
PRK05865	854	hypothetical protein; Provisional	95.1
cd01484	234	E1-2_like Ubiquitin activating enzyme (E1), repeat	95.08
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.07
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	95.07
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	95.06
PRK06823	315	ornithine cyclodeaminase; Validated	95.04
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	95.04
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	95.01
TIGR01087	433	murD UDP-N-acetylmuramoylalanine--D-glutamate liga	94.99
PRK05225	487	ketol-acid reductoisomerase; Validated	94.97
PLN02725	306	GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductas	94.96
PRK08177	225	short chain dehydrogenase; Provisional	94.96
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	94.93
KOG0172	445	consensus Lysine-ketoglutarate reductase/saccharop	94.93
cd01490	435	Ube1_repeat2 Ubiquitin activating enzyme (E1), rep	94.93
PRK12320	699	hypothetical protein; Provisional	94.92
PRK14982	340	acyl-ACP reductase; Provisional	94.91
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	94.89
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	94.88
KOG1494	345	consensus NAD-dependent malate dehydrogenase [Ener	94.86
PF13607	138	Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin	94.81
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	94.81
PLN02240	352	UDP-glucose 4-epimerase	94.78
PLN02896	353	cinnamyl-alcohol dehydrogenase	94.74
PRK11730	715	fadB multifunctional fatty acid oxidation complex	94.74
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	94.73
PF02593	217	dTMP_synthase: Thymidylate synthase; InterPro: IPR	94.73
PF02571	249	CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro:	94.72
KOG2733	423	consensus Uncharacterized membrane protein [Functi	94.72
PRK06487	317	glycerate dehydrogenase; Provisional	94.72
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	94.71
PF01370	236	Epimerase: NAD dependent epimerase/dehydratase fam	94.71
PRK10084	352	dTDP-glucose 4,6 dehydratase; Provisional	94.7
TIGR01472	343	gmd GDP-mannose 4,6-dehydratase. Excluded from thi	94.64
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.64
PRK03803	448	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.55
PRK15204	476	undecaprenyl-phosphate galactose phosphotransferas	94.54
TIGR03022	456	WbaP_sugtrans Undecaprenyl-phosphate galactose pho	94.52
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	94.52
PLN02928	347	oxidoreductase family protein	94.5
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	94.49
PRK13940	414	glutamyl-tRNA reductase; Provisional	94.48
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	94.45
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	94.41
TIGR03589	324	PseB UDP-N-acetylglucosamine 4,6-dehydratase. This	94.41
PRK00683	418	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.4
PLN02989	325	cinnamyl-alcohol dehydrogenase family protein	94.39
PLN00106	323	malate dehydrogenase	94.39
PLN02653	340	GDP-mannose 4,6-dehydratase	94.34
PRK06091	555	membrane protein FdrA; Validated	94.3
TIGR02622	349	CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member	94.28
PLN00203	519	glutamyl-tRNA reductase	94.28
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	94.27
PRK06138	252	short chain dehydrogenase; Provisional	94.26
PF08484	160	Methyltransf_14: C-methyltransferase C-terminal do	94.21
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.2
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	94.19
PRK03806	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.18
KOG1203	411	consensus Predicted dehydrogenase [Carbohydrate tr	94.18
), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF02844">PF02844	100	GARS_N: Phosphoribosylglycinamide synthetase, N do	94.17
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	94.16
KOG2774	366	consensus NAD dependent epimerase [General functio	94.12
PRK06988	312	putative formyltransferase; Provisional	94.11
PRK06180	277	short chain dehydrogenase; Provisional	94.1
PRK08267	260	short chain dehydrogenase; Provisional	94.09
PRK08340	259	glucose-1-dehydrogenase; Provisional	94.08
PRK10538	248	malonic semialdehyde reductase; Provisional	94.06
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	94.03
cd01486	307	Apg7 Apg7 is an E1-like protein, that activates tw	94.01
PRK03659	601	glutathione-regulated potassium-efflux system prot	94.0
KOG4777	361	consensus Aspartate-semialdehyde dehydrogenase [Am	93.98
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	93.98
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	93.96
PLN02686	367	cinnamoyl-CoA reductase	93.95
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	93.95
COG0451	314	WcaG Nucleoside-diphosphate-sugar epimerases [Cell	93.89
TIGR01381	664	E1_like_apg7 E1-like protein-activating enzyme Gsa	93.88
KOG2018	430	consensus Predicted dinucleotide-utilizing enzyme	93.86
PRK07904	253	short chain dehydrogenase; Provisional	93.84
PRK03562	621	glutathione-regulated potassium-efflux system prot	93.8
PRK09009	235	C factor cell-cell signaling protein; Provisional	93.76
PRK05884	223	short chain dehydrogenase; Provisional	93.72
COG0569	225	TrkA K+ transport systems, NAD-binding component [	93.71
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	93.7
PLN02306	386	hydroxypyruvate reductase	93.65
PRK07825	273	short chain dehydrogenase; Provisional	93.61
COG0059	338	IlvC Ketol-acid reductoisomerase [Amino acid trans	93.59
KOG1014	312	consensus 17 beta-hydroxysteroid dehydrogenase typ	93.56
PRK07589	346	ornithine cyclodeaminase; Validated	93.56
PLN02572	442	UDP-sulfoquinovose synthase	93.53
PRK06179	270	short chain dehydrogenase; Provisional	93.48
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	93.43
PRK14573	809	bifunctional D-alanyl-alanine synthetase A/UDP-N-a	93.41
PRK01368	454	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.38
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	93.38
KOG0068	406	consensus D-3-phosphoglycerate dehydrogenase, D-is	93.37
cd00704	323	MDH Malate dehydrogenase. Malate dehydrogenase (MD	93.37
PRK06395	435	phosphoribosylamine--glycine ligase; Provisional	93.35
COG2423	330	Predicted ornithine cyclodeaminase, mu-crystallin	93.33
PRK06953	222	short chain dehydrogenase; Provisional	93.31
COG2403	449	Predicted GTPase [General function prediction only	93.27
TIGR01759	323	MalateDH-SF1 malate dehydrogenase. This model repr	93.27
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.24
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	93.22
PRK09186	256	flagellin modification protein A; Provisional	93.17
TIGR01082	448	murC UDP-N-acetylmuramate--alanine ligase. UDP-N-a	93.15
TIGR03013	442	EpsB_2 sugar transferase, PEP-CTERM system associa	93.14
PRK05565	247	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	93.13
KOG2250	514	consensus Glutamate/leucine/phenylalanine/valine d	93.12
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	93.12
TIGR00514	449	accC acetyl-CoA carboxylase, biotin carboxylase su	93.06
PRK01390	460	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.04
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	93.01
PRK07578	199	short chain dehydrogenase; Provisional	92.98
TIGR01142	380	purT phosphoribosylglycinamide formyltransferase 2	92.97
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	92.96
PRK12938	246	acetyacetyl-CoA reductase; Provisional	92.94
PRK02006	498	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.82
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	92.82
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.76
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	92.74
COG0702	275	Predicted nucleoside-diphosphate-sugar epimerases	92.71
PRK12829	264	short chain dehydrogenase; Provisional	92.69
PRK07577	234	short chain dehydrogenase; Provisional	92.61
KOG1430	361	consensus C-3 sterol dehydrogenase/3-beta-hydroxys	92.56
PRK06719	157	precorrin-2 dehydrogenase; Validated	92.56
KOG2653	487	consensus 6-phosphogluconate dehydrogenase [Carboh	92.54
PRK07023	243	short chain dehydrogenase; Provisional	92.54
PRK06153	393	hypothetical protein; Provisional	92.54
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	92.53
PRK06196	315	oxidoreductase; Provisional	92.52
PF07994	295	NAD_binding_5: Myo-inositol-1-phosphate synthase;	92.51
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	92.43
PRK05442	326	malate dehydrogenase; Provisional	92.37
PRK12745	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	92.32
PRK12742	237	oxidoreductase; Provisional	92.31
PRK00005	309	fmt methionyl-tRNA formyltransferase; Reviewed	92.29
PRK00885	420	phosphoribosylamine--glycine ligase; Provisional	92.25
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	92.22
PRK05872	296	short chain dehydrogenase; Provisional	92.22
PRK08416	260	7-alpha-hydroxysteroid dehydrogenase; Provisional	92.21
TIGR01757	387	Malate-DH_plant malate dehydrogenase, NADP-depende	92.14
PF02423	313	OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst	92.12
COG1090	297	Predicted nucleoside-diphosphate sugar epimerase [	92.12
PRK06463	255	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	92.12
PLN00112	444	malate dehydrogenase (NADP); Provisional	92.06
TIGR00877	423	purD phosphoribosylamine--glycine ligase. This enz	92.04
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	92.0
PRK12743	256	oxidoreductase; Provisional	91.98
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	91.95
cd05297	423	GH4_alpha_glucosidase_galactosidase Glycoside Hydr	91.94
PLN02602	350	lactate dehydrogenase	91.9
PRK12825	249	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	91.86
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	91.85
PRK08017	256	oxidoreductase; Provisional	91.83
PRK10669	558	putative cation:proton antiport protein; Provision	91.79
TIGR01408	1008	Ube1 ubiquitin-activating enzyme E1. This model re	91.79
cd01337	310	MDH_glyoxysomal_mitochondrial Glyoxysomal and mito	91.77
cd01493	425	APPBP1_RUB Ubiquitin activating enzyme (E1) subuni	91.76
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	91.74
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	91.73
PRK12828	239	short chain dehydrogenase; Provisional	91.71
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	91.68
PRK06523	260	short chain dehydrogenase; Provisional	91.61
cd08292	324	ETR_like_2 2-enoyl thioester reductase (ETR) like	91.54
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	91.54
PRK12744	257	short chain dehydrogenase; Provisional	91.52
PRK05854	313	short chain dehydrogenase; Provisional	91.51
PRK07890	258	short chain dehydrogenase; Provisional	91.5
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	91.47
KOG2711	372	consensus Glycerol-3-phosphate dehydrogenase/dihyd	91.41
PRK08251	248	short chain dehydrogenase; Provisional	91.35
cd05295	452	MDH_like Malate dehydrogenase-like. These MDH-like	91.34
TIGR02685	267	pter_reduc_Leis pteridine reductase. Pteridine red	91.3

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=99.97  E-value=8.8e-31  Score=194.96  Aligned_cols=120  Identities=33%  Similarity=0.552  Sum_probs=107.4

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC---CCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEE
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS---VGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~---~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVID  112 (163)
                      |||+|+|++||||+.+++.+.++++++|++++++..   .|+|++++++.. +.++++++|++++++      .+||+||
T Consensus         1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~-~~~~~v~~~l~~~~~------~~DVvID   73 (124)
T PF01113_consen    1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIG-PLGVPVTDDLEELLE------EADVVID   73 (124)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSS-T-SSBEBS-HHHHTT------H-SEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcC-CcccccchhHHHhcc------cCCEEEE
Confidence            799999988999999999999999999999999653   799999999987 889999999999996      5999999


Q ss_pred             ccCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeEEcCC
Q 031216          113 FTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVSTGS  162 (163)
Q Consensus       113 fT~p~~~~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv~tg~  162 (163)
                      ||+|+...++++.|+++|+|+|+|||||++++.++|++++++.|+++++|
T Consensus        74 fT~p~~~~~~~~~~~~~g~~~ViGTTG~~~~~~~~l~~~a~~~~vl~a~N  123 (124)
T PF01113_consen   74 FTNPDAVYDNLEYALKHGVPLVIGTTGFSDEQIDELEELAKKIPVLIAPN  123 (124)
T ss_dssp             ES-HHHHHHHHHHHHHHT-EEEEE-SSSHHHHHHHHHHHTTTSEEEE-SS
T ss_pred             cCChHHhHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHHhccCCEEEeCC
Confidence            99999999999999999999999999999999999999999999999987

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]

Probab=99.95  E-value=1.8e-27  Score=196.67  Aligned_cols=122  Identities=30%  Similarity=0.427  Sum_probs=113.9

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC---CCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEE
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH---SVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVV  110 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~---~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVV  110 (163)
                      +||||+|+|++||||+.+++++.+.|+++|+++++++   ..|.|++++++.. ..++++++++....      .++||+
T Consensus         1 ~~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~~~g~d~ge~~g~~-~~gv~v~~~~~~~~------~~~DV~   73 (266)
T COG0289           1 SMIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLSLGSDAGELAGLG-LLGVPVTDDLLLVK------ADADVL   73 (266)
T ss_pred             CCceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCccccccchhhhcccc-ccCceeecchhhcc------cCCCEE
Confidence            4799999999999999999999999999999999954   4688999999886 88999999976665      499999


Q ss_pred             EEccCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeEEcCC
Q 031216          111 IDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVSTGS  162 (163)
Q Consensus       111 IDfT~p~~~~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv~tg~  162 (163)
                      ||||+|+...++++.|+++|+++|+|||||++++.++|++++++.|+|+++|
T Consensus        74 IDFT~P~~~~~~l~~~~~~~~~lVIGTTGf~~e~~~~l~~~a~~v~vv~a~N  125 (266)
T COG0289          74 IDFTTPEATLENLEFALEHGKPLVIGTTGFTEEQLEKLREAAEKVPVVIAPN  125 (266)
T ss_pred             EECCCchhhHHHHHHHHHcCCCeEEECCCCCHHHHHHHHHHHhhCCEEEecc
Confidence            9999999999999999999999999999999999999999999999999987

>TIGR00036 dapB dihydrodipicolinate reductase

Probab=99.92  E-value=4.5e-24  Score=177.29  Aligned_cols=121  Identities=30%  Similarity=0.451  Sum_probs=108.3

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC---CCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEE
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH---SVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI  111 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~---~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVI  111 (163)
                      |+||+|+|++|+||+.+++.+.+.|+++|++++|+.   ..+++++++.+.. +.++++++|++++ .     .++||||
T Consensus         1 ~ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~-~~gv~~~~d~~~l-~-----~~~DvVI   73 (266)
T TIGR00036         1 TIKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIG-KVGVPVTDDLEAV-E-----TDPDVLI   73 (266)
T ss_pred             CeEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcC-cCCceeeCCHHHh-c-----CCCCEEE
Confidence            589999997899999999999999999999999942   2366777777654 5678999999998 4     4799999


Q ss_pred             EccCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhh--cCeEEcCC
Q 031216          112 DFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDK--ASMVSTGS  162 (163)
Q Consensus       112 DfT~p~~~~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~--~~Vv~tg~  162 (163)
                      |||+|+.+.+++..|+++|+|+|+||||+++++.++|.++|++  .+++++.+
T Consensus        74 dfT~p~~~~~~~~~al~~g~~vVigttg~~~e~~~~l~~aA~~~g~~v~~a~N  126 (266)
T TIGR00036        74 DFTTPEGVLNHLKFALEHGVRLVVGTTGFSEEDKQELADLAEKAGIAAVIAPN  126 (266)
T ss_pred             ECCChHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHhcCCccEEEECc
Confidence            9999999999999999999999999999999999999999999  77999875

>PLN02775 Probable dihydrodipicolinate reductase

Probab=99.91  E-value=1.8e-23  Score=175.25  Aligned_cols=126  Identities=21%  Similarity=0.310  Sum_probs=108.6

Q ss_pred             CCCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchh-hhccCCCCCCccee--CCHHHHHhcccccCC
Q 031216           30 NPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIG-MVCDMEQPLEIPVM--SDLTMVLGSISQSKA  106 (163)
Q Consensus        30 ~~~~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~-~l~g~~~~~gi~v~--~~l~ell~~~~~~~~  106 (163)
                      .|+++.+||+|.|+.|+||+++++.+.+ ++++||+.+|+...|.+.+ ++.|    .+++++  +|+++++.+++ ...
T Consensus         6 ~~~~~~i~V~V~Ga~G~MG~~~~~av~~-~~~~Lv~~~~~~~~~~~~~~~~~g----~~v~~~~~~dl~~~l~~~~-~~~   79 (286)
T PLN02775          6 SPPGSAIPIMVNGCTGKMGHAVAEAAVS-AGLQLVPVSFTGPAGVGVTVEVCG----VEVRLVGPSEREAVLSSVK-AEY   79 (286)
T ss_pred             CCcCCCCeEEEECCCChHHHHHHHHHhc-CCCEEEEEeccccccccccceecc----ceeeeecCccHHHHHHHhh-ccC
Confidence            3456679999999999999999999998 9999999999776777777 6654    278888  99999996411 126


Q ss_pred             cc-EEEEccCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeEEcCC
Q 031216          107 RA-VVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVSTGS  162 (163)
Q Consensus       107 ~D-VVIDfT~p~~~~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv~tg~  162 (163)
                      +| |+||||+|+.+.++++.|+++|+|+|+|||||++++.+++.+ ++..|+|+++|
T Consensus        80 ~~~VvIDFT~P~a~~~~~~~~~~~g~~~VvGTTG~~~e~l~~~~~-~~~i~vv~apN  135 (286)
T PLN02775         80 PNLIVVDYTLPDAVNDNAELYCKNGLPFVMGTTGGDRDRLLKDVE-ESGVYAVIAPQ  135 (286)
T ss_pred             CCEEEEECCChHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHh-cCCccEEEECc
Confidence            99 999999999999999999999999999999999998888766 56799999986

>TIGR02130 dapB_plant dihydrodipicolinate reductase

Probab=99.90  E-value=7.6e-23  Score=170.79  Aligned_cols=116  Identities=23%  Similarity=0.298  Sum_probs=105.2

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEE-EecCCCCcchhhhccCCCCCCcce------eCCHHHHHhcccccCCcc
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA-IDSHSVGEDIGMVCDMEQPLEIPV------MSDLTMVLGSISQSKARA  108 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgv-id~~~~g~~~~~l~g~~~~~gi~v------~~~l~ell~~~~~~~~~D  108 (163)
                      +||+|.||+|+||+++++.+.. ++++||+. +|.+..+.+.+++.|.    ++++      +++++++++     ..+|
T Consensus         1 ~~V~V~Ga~GkMG~~v~~av~~-~~~~Lv~~~~~~~~~~~~~~~~~g~----~v~v~~~~~~~~~l~~~~~-----~~~d   70 (275)
T TIGR02130         1 IQIMVNGCPGKMGKAVAEAADA-AGLEIVPTSFGGEEEAENEAEVAGK----EILLHGPSEREARIGEVFA-----KYPE   70 (275)
T ss_pred             CeEEEeCCCChHHHHHHHHHhc-CCCEEEeeEccccccccchhhhccc----ceeeeccccccccHHHHHh-----hcCC
Confidence            5899999999999999999987 99999998 8876677788888753    7888      899999986     4699


Q ss_pred             -EEEEccCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeEEcCC
Q 031216          109 -VVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVSTGS  162 (163)
Q Consensus       109 -VVIDfT~p~~~~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv~tg~  162 (163)
                       |+||||+|+.+.++++.|+++|+|+|+|||||++++.++|.+.++ .|++++++
T Consensus        71 ~VvIDFT~P~~~~~n~~~~~~~gv~~ViGTTG~~~~~~~~l~~~~~-i~~l~apN  124 (275)
T TIGR02130        71 LICIDYTHPSAVNDNAAFYGKHGIPFVMGTTGGDREALAKLVADAK-HPAVIAPN  124 (275)
T ss_pred             EEEEECCChHHHHHHHHHHHHCCCCEEEcCCCCCHHHHHHHHHhcC-CCEEEECc
Confidence             999999999999999999999999999999999999999988764 99999986

This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.

>PRK00048 dihydrodipicolinate reductase; Provisional

Probab=99.88  E-value=5.6e-22  Score=163.82  Aligned_cols=116  Identities=27%  Similarity=0.351  Sum_probs=102.1

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT  114 (163)
                      |+||+|+|++|+||+.+++.+.+.++++|++++|+....  ....    ...++++++|+++++.      ++|+|||||
T Consensus         1 ~mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~--~~~~----~~~~i~~~~dl~~ll~------~~DvVid~t   68 (257)
T PRK00048          1 MIKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSP--LVGQ----GALGVAITDDLEAVLA------DADVLIDFT   68 (257)
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcc--cccc----CCCCccccCCHHHhcc------CCCEEEECC
Confidence            589999997799999999999989999999999965321  1111    1457788999999884      799999999


Q ss_pred             CchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeEEcCC
Q 031216          115 DASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVSTGS  162 (163)
Q Consensus       115 ~p~~~~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv~tg~  162 (163)
                      +|+.+.+++..|+++|+|+|+||||++.++.++|.+++++.|++++.+
T Consensus        69 ~p~~~~~~~~~al~~G~~vvigttG~s~~~~~~l~~aa~~~~v~~s~n  116 (257)
T PRK00048         69 TPEATLENLEFALEHGKPLVIGTTGFTEEQLAELEEAAKKIPVVIAPN  116 (257)
T ss_pred             CHHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHhcCCCEEEECc
Confidence            999999999999999999999999999999999999999999999875

>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=99.77  E-value=6e-18  Score=122.71  Aligned_cols=114  Identities=26%  Similarity=0.316  Sum_probs=98.6

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhc-CCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~-~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT  114 (163)
                      |||+|+| +|++|+.+.+.+.+. +++++++++|+..  .+...+.   ..++++.|+|++++++.    +++|+|+.+|
T Consensus         1 i~v~iiG-~G~~g~~~~~~~~~~~~~~~v~~v~d~~~--~~~~~~~---~~~~~~~~~~~~~ll~~----~~~D~V~I~t   70 (120)
T PF01408_consen    1 IRVGIIG-AGSIGRRHLRALLRSSPDFEVVAVCDPDP--ERAEAFA---EKYGIPVYTDLEELLAD----EDVDAVIIAT   70 (120)
T ss_dssp             EEEEEES-TSHHHHHHHHHHHHTTTTEEEEEEECSSH--HHHHHHH---HHTTSEEESSHHHHHHH----TTESEEEEES
T ss_pred             CEEEEEC-CcHHHHHHHHHHHhcCCCcEEEEEEeCCH--HHHHHHH---HHhcccchhHHHHHHHh----hcCCEEEEec
Confidence            6999999 599999999888887 9999999999753  2222222   25678899999999985    7899999999


Q ss_pred             CchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCeEE
Q 031216          115 DASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMVS  159 (163)
Q Consensus       115 ~p~~~~~~~~~al~~G~~vVigtt-g~~~e~~~~L~~~A~~~~Vv~  159 (163)
                      ++..+.+++..++++|+||++++| +.+.++.++|.+++++.++.+
T Consensus        71 p~~~h~~~~~~~l~~g~~v~~EKP~~~~~~~~~~l~~~a~~~~~~~  116 (120)
T PF01408_consen   71 PPSSHAEIAKKALEAGKHVLVEKPLALTLEEAEELVEAAKEKGVKV  116 (120)
T ss_dssp             SGGGHHHHHHHHHHTTSEEEEESSSSSSHHHHHHHHHHHHHHTSCE
T ss_pred             CCcchHHHHHHHHHcCCEEEEEcCCcCCHHHHHHHHHHHHHhCCEE
Confidence            999999999999999999999999 789999999999999988654

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....

>PRK13303 L-aspartate dehydrogenase; Provisional

Probab=99.71  E-value=1.7e-16  Score=131.80  Aligned_cols=113  Identities=13%  Similarity=0.143  Sum_probs=93.1

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT  114 (163)
                      |+||+|+| +|+||+.+++.+.+.++++|++++++.....+..+..    ..++++++|++++ .     .++|+|+++|
T Consensus         1 m~rVgIiG-~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~----~~~~~~~~d~~~l-~-----~~~DvVve~t   69 (265)
T PRK13303          1 MMKVAMIG-FGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRAL----GEAVRVVSSVDAL-P-----QRPDLVVECA   69 (265)
T ss_pred             CcEEEEEC-CCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhh----ccCCeeeCCHHHh-c-----cCCCEEEECC
Confidence            68999999 5999999999999999999999997542222222222    1257889999998 5     5899999999


Q ss_pred             CchhHHHHHHHHHHcCCcEEEeCCC-CC-HHHHHHHHHHhhhcCeE
Q 031216          115 DASTVYDNVKQATAFGMRSVVYVPH-IQ-LETVSALSAFCDKASMV  158 (163)
Q Consensus       115 ~p~~~~~~~~~al~~G~~vVigttg-~~-~e~~~~L~~~A~~~~Vv  158 (163)
                      .|..+.+++..++++|+|+++++++ ++ .+..++|.++|++.++.
T Consensus        70 ~~~~~~e~~~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~~  115 (265)
T PRK13303         70 GHAALKEHVVPILKAGIDCAVISVGALADEALRERLEQAAEAGGAR  115 (265)
T ss_pred             CHHHHHHHHHHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCCE
Confidence            9999999999999999999999996 44 55678999999998864

>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]

Probab=99.66  E-value=7e-16  Score=129.44  Aligned_cols=117  Identities=22%  Similarity=0.238  Sum_probs=97.7

Q ss_pred             CCeeEEEEcCCC-HHHHHHHHHHHhcCC-cEEEEEEecCCCCcchhhhccCCCCCCcc-eeCCHHHHHhcccccCCccEE
Q 031216           34 SNIKVIINGAVK-EIGRAAVIAVTKARG-MEVAGAIDSHSVGEDIGMVCDMEQPLEIP-VMSDLTMVLGSISQSKARAVV  110 (163)
Q Consensus        34 ~~irV~VvGa~G-~mG~~i~~~i~~~~~-~eLvgvid~~~~g~~~~~l~g~~~~~gi~-v~~~l~ell~~~~~~~~~DVV  110 (163)
                      +++||||+|+ | .+++.++..+.+.++ +++++++|+..  .++..+.   ...+++ .|+|++++++.    +++|+|
T Consensus         2 ~~irvgiiG~-G~~~~~~~~~~~~~~~~~~~~vav~d~~~--~~a~~~a---~~~~~~~~~~~~~~ll~~----~~iD~V   71 (342)
T COG0673           2 KMIRVGIIGA-GGIAGKAHLPALAALGGGLELVAVVDRDP--ERAEAFA---EEFGIAKAYTDLEELLAD----PDIDAV   71 (342)
T ss_pred             CeeEEEEEcc-cHHHHHHhHHHHHhCCCceEEEEEecCCH--HHHHHHH---HHcCCCcccCCHHHHhcC----CCCCEE
Confidence            5799999995 6 556779999998888 79999999653  2223332   145564 89999999984    669999


Q ss_pred             EEccCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCeEEc
Q 031216          111 IDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMVST  160 (163)
Q Consensus       111 IDfT~p~~~~~~~~~al~~G~~vVigtt-g~~~e~~~~L~~~A~~~~Vv~t  160 (163)
                      +.+|++..+.+++..|+++||||+++|| +.|.++.++|.++|++.++.++
T Consensus        72 ~Iatp~~~H~e~~~~AL~aGkhVl~EKPla~t~~ea~~l~~~a~~~~~~l~  122 (342)
T COG0673          72 YIATPNALHAELALAALEAGKHVLCEKPLALTLEEAEELVELARKAGVKLM  122 (342)
T ss_pred             EEcCCChhhHHHHHHHHhcCCEEEEcCCCCCCHHHHHHHHHHHHHcCCcee
Confidence            9999999999999999999999999999 8999999999999999987653

>PRK11579 putative oxidoreductase; Provisional

Probab=99.66  E-value=1.5e-15  Score=129.41  Aligned_cols=114  Identities=19%  Similarity=0.206  Sum_probs=96.5

Q ss_pred             CeeEEEEcCCCHHHH-HHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEc
Q 031216           35 NIKVIINGAVKEIGR-AAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (163)
Q Consensus        35 ~irV~VvGa~G~mG~-~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDf  113 (163)
                      ++||||+| +|.||+ .++..+...++++|++++|+..  ....+.     ..++++|+|++++++.    .++|+|+.+
T Consensus         4 ~irvgiiG-~G~i~~~~~~~~~~~~~~~~l~av~d~~~--~~~~~~-----~~~~~~~~~~~ell~~----~~vD~V~I~   71 (346)
T PRK11579          4 KIRVGLIG-YGYASKTFHAPLIAGTPGLELAAVSSSDA--TKVKAD-----WPTVTVVSEPQHLFND----PNIDLIVIP   71 (346)
T ss_pred             cceEEEEC-CCHHHHHHHHHHHhhCCCCEEEEEECCCH--HHHHhh-----CCCCceeCCHHHHhcC----CCCCEEEEc
Confidence            59999999 699998 5788888899999999999643  112111     2246689999999974    789999999


Q ss_pred             cCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCeEEc
Q 031216          114 TDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMVST  160 (163)
Q Consensus       114 T~p~~~~~~~~~al~~G~~vVigtt-g~~~e~~~~L~~~A~~~~Vv~t  160 (163)
                      |++..+.+++..|+++||||++++| +.+.++.++|.++|++.++++.
T Consensus        72 tp~~~H~~~~~~al~aGkhVl~EKPla~t~~ea~~l~~~a~~~g~~l~  119 (346)
T PRK11579         72 TPNDTHFPLAKAALEAGKHVVVDKPFTVTLSQARELDALAKSAGRVLS  119 (346)
T ss_pred             CCcHHHHHHHHHHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHhCCEEE
Confidence            9999999999999999999999999 7899999999999999988753

>PRK10206 putative oxidoreductase; Provisional

Probab=99.59  E-value=1.2e-14  Score=124.42  Aligned_cols=115  Identities=22%  Similarity=0.199  Sum_probs=94.3

Q ss_pred             CeeEEEEcCCCHHH-HHHHHHHHh-cCCcEEEEEEecCCCCcchhhhccCCCCC-CcceeCCHHHHHhcccccCCccEEE
Q 031216           35 NIKVIINGAVKEIG-RAAVIAVTK-ARGMEVAGAIDSHSVGEDIGMVCDMEQPL-EIPVMSDLTMVLGSISQSKARAVVI  111 (163)
Q Consensus        35 ~irV~VvGa~G~mG-~~i~~~i~~-~~~~eLvgvid~~~~g~~~~~l~g~~~~~-gi~v~~~l~ell~~~~~~~~~DVVI  111 (163)
                      |+||||+| +|+++ +.++..+.. .++++|++++|+...  . .++..   .+ ++++|+|++++++.    .++|+|+
T Consensus         1 ~irvgiiG-~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~--~-~~~~~---~~~~~~~~~~~~ell~~----~~iD~V~   69 (344)
T PRK10206          1 VINCAFIG-FGKSTTRYHLPYVLNRKDSWHVAHIFRRHAK--P-EEQAP---IYSHIHFTSDLDEVLND----PDVKLVV   69 (344)
T ss_pred             CeEEEEEC-CCHHHhheehhhHhcCCCCEEEEEEEcCChh--H-HHHHH---hcCCCcccCCHHHHhcC----CCCCEEE
Confidence            68999999 69976 457776644 578999999997531  1 12221   23 36789999999974    7899999


Q ss_pred             EccCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCeEEc
Q 031216          112 DFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMVST  160 (163)
Q Consensus       112 DfT~p~~~~~~~~~al~~G~~vVigtt-g~~~e~~~~L~~~A~~~~Vv~t  160 (163)
                      .+|++..+.+++..|+++||||+++|| ..+.++.++|.++|++.++.+.
T Consensus        70 I~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~~~~l~  119 (344)
T PRK10206         70 VCTHADSHFEYAKRALEAGKNVLVEKPFTPTLAEAKELFALAKSKGLTVT  119 (344)
T ss_pred             EeCCchHHHHHHHHHHHcCCcEEEecCCcCCHHHHHHHHHHHHHhCCEEE
Confidence            899999999999999999999999999 7899999999999999997764

>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]

Probab=99.57  E-value=1.3e-14  Score=124.64  Aligned_cols=126  Identities=22%  Similarity=0.264  Sum_probs=103.7

Q ss_pred             CCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC---------CCcc---------hhhhccCCCCCCcceeCC
Q 031216           32 PQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS---------VGED---------IGMVCDMEQPLEIPVMSD   93 (163)
Q Consensus        32 ~~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~---------~g~~---------~~~l~g~~~~~gi~v~~~   93 (163)
                      ..+|+|||++|+ |.||+.++.++...|+++++++.|+..         .|++         +......-+...+.+++|
T Consensus        14 ~G~PiRVGlIGA-G~mG~~ivtQi~~m~Gm~vvaisd~~~~~ak~A~~~ag~~~~~~~e~~~~s~~a~Ai~aGKi~vT~D   92 (438)
T COG4091          14 EGKPIRVGLIGA-GEMGTGIVTQIASMPGMEVVAISDRNLDAAKRAYDRAGGPKIEAVEADDASKMADAIEAGKIAVTDD   92 (438)
T ss_pred             cCCceEEEEecc-cccchHHHHHHhhcCCceEEEEecccchHHHHHHHHhcCCcccccccchhhHHHHHHhcCcEEEecc
Confidence            346899999995 999999999999999999999999532         1211         111111002456778899


Q ss_pred             HHHHHhcccccCCccEEEEcc-CchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeEEcCC
Q 031216           94 LTMVLGSISQSKARAVVIDFT-DASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVSTGS  162 (163)
Q Consensus        94 l~ell~~~~~~~~~DVVIDfT-~p~~~~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv~tg~  162 (163)
                      .++++..    ..+|||||.| .|+...++...++.+|||+|+-.-..|-.-...|++.|++.|++||++
T Consensus        93 ~~~i~~~----~~IdvIIdATG~p~vGA~~~l~Ai~h~KHlVMmNVEaDvtIGp~Lk~~Ad~~GviyS~~  158 (438)
T COG4091          93 AELIIAN----DLIDVIIDATGVPEVGAKIALEAILHGKHLVMMNVEADVTIGPILKQQADAAGVIYSGG  158 (438)
T ss_pred             hhhhhcC----CcceEEEEcCCCcchhhHhHHHHHhcCCeEEEEEeeeceeecHHHHHHHhhcCeEEecc
Confidence            9998875    8999999999 788889999999999999999888888888899999999999999987

>PRK13304 L-aspartate dehydrogenase; Reviewed

Probab=99.56  E-value=4.4e-14  Score=117.28  Aligned_cols=111  Identities=14%  Similarity=0.138  Sum_probs=92.5

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcC-CcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEc
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~-~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDf  113 (163)
                      |+||+|+| +|+||+.+++.+.+.+ ++++++++|+..  ....++..   ..+.+.++++++++.      ++|+|+++
T Consensus         1 mmrIgIIG-~G~iG~~ia~~l~~~~~~~elv~v~d~~~--~~a~~~a~---~~~~~~~~~~~ell~------~~DvVvi~   68 (265)
T PRK13304          1 MLKIGIVG-CGAIASLITKAILSGRINAELYAFYDRNL--EKAENLAS---KTGAKACLSIDELVE------DVDLVVEC   68 (265)
T ss_pred             CCEEEEEC-ccHHHHHHHHHHHcCCCCeEEEEEECCCH--HHHHHHHH---hcCCeeECCHHHHhc------CCCEEEEc
Confidence            58999999 6999999999988764 899999999653  22233322   346678899999884      89999999


Q ss_pred             cCchhHHHHHHHHHHcCCcEEEeCCCC--CHHHHHHHHHHhhhcCe
Q 031216          114 TDASTVYDNVKQATAFGMRSVVYVPHI--QLETVSALSAFCDKASM  157 (163)
Q Consensus       114 T~p~~~~~~~~~al~~G~~vVigttg~--~~e~~~~L~~~A~~~~V  157 (163)
                      +.|+.+.+++..++++|+++++.+++.  +.+..++|.++|++.++
T Consensus        69 a~~~~~~~~~~~al~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g~  114 (265)
T PRK13304         69 ASVNAVEEVVPKSLENGKDVIIMSVGALADKELFLKLYKLAKENNC  114 (265)
T ss_pred             CChHHHHHHHHHHHHcCCCEEEEchHHhcCHHHHHHHHHHHHHcCC
Confidence            999999999999999999999988853  78888999999999884

>TIGR01761 thiaz-red thiazolinyl imide reductase

Probab=99.52  E-value=8.6e-14  Score=119.82  Aligned_cols=114  Identities=16%  Similarity=0.178  Sum_probs=90.0

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcC-CcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEE
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~-~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVID  112 (163)
                      .++||+|+| + +||+.+++.+.+.+ +++|+|++|+..  +++.++.   ..++++.|+|++++++.    .++|+|..
T Consensus         2 ~~~rVgViG-~-~~G~~h~~al~~~~~~~eLvaV~d~~~--erA~~~A---~~~gi~~y~~~eell~d----~Di~~V~i   70 (343)
T TIGR01761         2 DVQSVVVCG-T-RFGQFYLAAFAAAPERFELAGILAQGS--ERSRALA---HRLGVPLYCEVEELPDD----IDIACVVV   70 (343)
T ss_pred             CCcEEEEEe-H-HHHHHHHHHHHhCCCCcEEEEEEcCCH--HHHHHHH---HHhCCCccCCHHHHhcC----CCEEEEEe
Confidence            469999999 4 78999999999888 899999999753  2333333   25678899999999962    34444443


Q ss_pred             cc--CchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeEE
Q 031216          113 FT--DASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVS  159 (163)
Q Consensus       113 fT--~p~~~~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv~  159 (163)
                      -|  .+..+.++++.|+++||||++++|=. .++.++|.++|++.++++
T Consensus        71 pt~~P~~~H~e~a~~aL~aGkHVL~EKPla-~~Ea~el~~~A~~~g~~l  118 (343)
T TIGR01761        71 RSAIVGGQGSALARALLARGIHVLQEHPLH-PRDIQDLLRLAERQGRRY  118 (343)
T ss_pred             CCCCCCccHHHHHHHHHhCCCeEEEcCCCC-HHHHHHHHHHHHHcCCEE
Confidence            22  34677999999999999999999944 689999999999998875

This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).

>PRK13302 putative L-aspartate dehydrogenase; Provisional

Probab=99.46  E-value=7.7e-13  Score=110.34  Aligned_cols=111  Identities=18%  Similarity=0.210  Sum_probs=88.7

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHh-cCCcEEEEEEecCCCCcchhhhccCCCCCC-cceeCCHHHHHhcccccCCccEEEE
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTK-ARGMEVAGAIDSHSVGEDIGMVCDMEQPLE-IPVMSDLTMVLGSISQSKARAVVID  112 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~-~~~~eLvgvid~~~~g~~~~~l~g~~~~~g-i~v~~~l~ell~~~~~~~~~DVVID  112 (163)
                      ++||||+| +|+||+.+++.+.. .++++|++++|+..  .+..++..   .++ ...++++++++.      ++|+|+.
T Consensus         6 ~irIGIIG-~G~IG~~~a~~L~~~~~~~el~aV~dr~~--~~a~~~a~---~~g~~~~~~~~eell~------~~D~Vvi   73 (271)
T PRK13302          6 ELRVAIAG-LGAIGKAIAQALDRGLPGLTLSAVAVRDP--QRHADFIW---GLRRPPPVVPLDQLAT------HADIVVE   73 (271)
T ss_pred             eeEEEEEC-ccHHHHHHHHHHHhcCCCeEEEEEECCCH--HHHHHHHH---hcCCCcccCCHHHHhc------CCCEEEE
Confidence            59999999 69999999999987 48999999999753  12223321   334 356789999974      7899999


Q ss_pred             ccCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeE
Q 031216          113 FTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMV  158 (163)
Q Consensus       113 fT~p~~~~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv  158 (163)
                      +++++.+.+++..++++|+++++..++- .++.++|.++|++.++-
T Consensus        74 ~tp~~~h~e~~~~aL~aGk~Vi~~s~ga-l~~~~~L~~~A~~~g~~  118 (271)
T PRK13302         74 AAPASVLRAIVEPVLAAGKKAIVLSVGA-LLRNEDLIDLARQNGGQ  118 (271)
T ss_pred             CCCcHHHHHHHHHHHHcCCcEEEecchh-HHhHHHHHHHHHHcCCE
Confidence            9999999999999999999999976552 34678999999997753

>PRK06270 homoserine dehydrogenase; Provisional

Probab=99.45  E-value=7.2e-13  Score=113.72  Aligned_cols=120  Identities=16%  Similarity=0.184  Sum_probs=88.2

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcC---------CcEEEEEEecC-----CCCcchhhhccCCCCCC-cc------eeCC
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKAR---------GMEVAGAIDSH-----SVGEDIGMVCDMEQPLE-IP------VMSD   93 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~---------~~eLvgvid~~-----~~g~~~~~l~g~~~~~g-i~------v~~~   93 (163)
                      ++||+|+| +|.||+.+++.+.+.+         +++|++++|++     ..|.+..++.......+ ..      .+.+
T Consensus         2 ~i~V~IiG-~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d   80 (341)
T PRK06270          2 EMKIALIG-FGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEIS   80 (341)
T ss_pred             eEEEEEEC-CCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCC
Confidence            58999999 6999999999998764         79999999953     23444433322111112 11      2358


Q ss_pred             HHHHHhcccccCCccEEEEccCchh-----HHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeEE
Q 031216           94 LTMVLGSISQSKARAVVIDFTDAST-----VYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVS  159 (163)
Q Consensus        94 l~ell~~~~~~~~~DVVIDfT~p~~-----~~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv~  159 (163)
                      +++++..    .++|+|+|+|.+..     ..++++.++++|+|||+++.+......++|.++|++.++.+
T Consensus        81 ~~ell~~----~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~~~  147 (341)
T PRK06270         81 GLEVIRS----VDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGVRF  147 (341)
T ss_pred             HHHHhhc----cCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCCEE
Confidence            8998864    68999999986543     37899999999999999876554556789999999987643

>PRK06349 homoserine dehydrogenase; Provisional

Probab=99.43  E-value=1e-12  Score=115.78  Aligned_cols=113  Identities=12%  Similarity=0.105  Sum_probs=91.2

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcC---------CcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccC
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKAR---------GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSK  105 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~---------~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~  105 (163)
                      ++||+|+| +|.+|+.+++.+.+++         +++|++++|++..  ....   .. ..+..+++|+++++..    .
T Consensus         3 ~i~VgiiG-~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~--~~~~---~~-~~~~~~~~d~~~ll~d----~   71 (426)
T PRK06349          3 PLKVGLLG-LGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLE--KDRG---VD-LPGILLTTDPEELVND----P   71 (426)
T ss_pred             eEEEEEEe-eCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChh--hccC---CC-CcccceeCCHHHHhhC----C
Confidence            59999999 6999999999887653         7899999996431  1111   11 2345678999999974    7


Q ss_pred             CccEEEEccCc-hhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeE
Q 031216          106 ARAVVIDFTDA-STVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMV  158 (163)
Q Consensus       106 ~~DVVIDfT~p-~~~~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv  158 (163)
                      ++|+|+++|.+ +.+.++++.|+++|||||+..+++..++.++|.++|+++++.
T Consensus        72 ~iDvVve~tg~~~~~~~~~~~aL~~GkhVVtaNK~~~a~~~~eL~~lA~~~gv~  125 (426)
T PRK06349         72 DIDIVVELMGGIEPARELILKALEAGKHVVTANKALLAVHGAELFAAAEEKGVD  125 (426)
T ss_pred             CCCEEEECCCCchHHHHHHHHHHHCCCeEEEcCHHHHHHHHHHHHHHHHHcCCc
Confidence            89999999854 567899999999999999988888888999999999998873

>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.42  E-value=2.3e-12  Score=110.35  Aligned_cols=121  Identities=14%  Similarity=0.097  Sum_probs=100.5

Q ss_pred             CCCCeeEEEEcCCCHHHHHHHHHHHhcC--CcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccE
Q 031216           32 PQSNIKVIINGAVKEIGRAAVIAVTKAR--GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV  109 (163)
Q Consensus        32 ~~~~irV~VvGa~G~mG~~i~~~i~~~~--~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DV  109 (163)
                      .+..+|+|++| .|+|++.+++.+...|  +.+++++.|+..  ..+.+++....-.+..+|+++|+++.+    +.+||
T Consensus         3 ~s~~ir~Gi~g-~g~ia~~f~~al~~~p~s~~~Ivava~~s~--~~A~~fAq~~~~~~~k~y~syEeLakd----~~vDv   75 (351)
T KOG2741|consen    3 DSATIRWGIVG-AGRIARDFVRALHTLPESNHQIVAVADPSL--ERAKEFAQRHNIPNPKAYGSYEELAKD----PEVDV   75 (351)
T ss_pred             CCceeEEEEee-hhHHHHHHHHHhccCcccCcEEEEEecccH--HHHHHHHHhcCCCCCccccCHHHHhcC----CCcCE
Confidence            45679999999 5999999999999999  999999999743  445555531101145689999999974    88999


Q ss_pred             EEEccCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCeEE
Q 031216          110 VIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMVS  159 (163)
Q Consensus       110 VIDfT~p~~~~~~~~~al~~G~~vVigtt-g~~~e~~~~L~~~A~~~~Vv~  159 (163)
                      |..-++...+.+.+..++++||||++++| ..+.+|.++|.++|++.++++
T Consensus        76 Vyi~~~~~qH~evv~l~l~~~K~VL~EKPla~n~~e~~~iveaA~~rgv~~  126 (351)
T KOG2741|consen   76 VYISTPNPQHYEVVMLALNKGKHVLCEKPLAMNVAEAEEIVEAAEARGVFF  126 (351)
T ss_pred             EEeCCCCccHHHHHHHHHHcCCcEEecccccCCHHHHHHHHHHHHHcCcEE
Confidence            88556666789999999999999999999 899999999999999999875

>TIGR01921 DAP-DH diaminopimelate dehydrogenase

Probab=99.41  E-value=2.7e-12  Score=109.80  Aligned_cols=107  Identities=17%  Similarity=0.136  Sum_probs=83.6

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT  114 (163)
                      ++||+|+| +|+||+.+++.+.+.|++||+|++|++..+ ....      ..++..+.+.++++      .++|+|+.++
T Consensus         3 kIRVgIVG-~GnIGr~~a~al~~~pd~ELVgV~dr~~~~-~~~~------~~~v~~~~d~~e~l------~~iDVViIct   68 (324)
T TIGR01921         3 KIRAAIVG-YGNLGRSVEKAIQQQPDMELVGVFSRRGAE-TLDT------ETPVYAVADDEKHL------DDVDVLILCM   68 (324)
T ss_pred             CcEEEEEe-ecHHHHHHHHHHHhCCCcEEEEEEcCCcHH-HHhh------cCCccccCCHHHhc------cCCCEEEEcC
Confidence            59999999 799999999999999999999999975311 1111      22333345666665      3899999888


Q ss_pred             CchhHHHHHHHHHHcCCcEEEeCCC-C-CHHHHHHHHHHhhhc
Q 031216          115 DASTVYDNVKQATAFGMRSVVYVPH-I-QLETVSALSAFCDKA  155 (163)
Q Consensus       115 ~p~~~~~~~~~al~~G~~vVigttg-~-~~e~~~~L~~~A~~~  155 (163)
                      .+..+.+.+..++++|+|||...+- . .++..++|.++|++.
T Consensus        69 Ps~th~~~~~~~L~aG~NVV~s~~~h~~~p~~~~~ld~AAk~~  111 (324)
T TIGR01921        69 GSATDIPEQAPYFAQFANTVDSFDNHRDIPRHRQVMDAAAKAA  111 (324)
T ss_pred             CCccCHHHHHHHHHcCCCEEECCCcccCCHHHHHHHHHHHHHc
Confidence            7778899999999999999997663 2 357789999999973

This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.

>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway

Probab=99.36  E-value=1.5e-12  Score=94.99  Aligned_cols=107  Identities=17%  Similarity=0.208  Sum_probs=81.4

Q ss_pred             CCCHHHHHHHHHHHhcC---CcEEEEEEecCC-CCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEccCchh
Q 031216           43 AVKEIGRAAVIAVTKAR---GMEVAGAIDSHS-VGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDAST  118 (163)
Q Consensus        43 a~G~mG~~i~~~i~~~~---~~eLvgvid~~~-~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT~p~~  118 (163)
                      ++|.||+.+++.+.+.+   +++++++++++. ...+....     ..+..++.+++++++.    .++|+|||+|.++.
T Consensus         1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~----~~~dvvVE~t~~~~   71 (117)
T PF03447_consen    1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAAS-----FPDEAFTTDLEELIDD----PDIDVVVECTSSEA   71 (117)
T ss_dssp             --SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHH-----HTHSCEESSHHHHHTH----TT-SEEEE-SSCHH
T ss_pred             CCCHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhh-----cccccccCCHHHHhcC----cCCCEEEECCCchH
Confidence            16999999999999887   899999999761 11111111     2345678999999974    58999999999999


Q ss_pred             HHHHHHHHHHcCCcEEEeCCCC--CHHHHHHHHHHhhhcCeE
Q 031216          119 VYDNVKQATAFGMRSVVYVPHI--QLETVSALSAFCDKASMV  158 (163)
Q Consensus       119 ~~~~~~~al~~G~~vVigttg~--~~e~~~~L~~~A~~~~Vv  158 (163)
                      ..+++..++++|+|||+...+.  +....++|.++|++.++-
T Consensus        72 ~~~~~~~~L~~G~~VVt~nk~ala~~~~~~~L~~~A~~~g~~  113 (117)
T PF03447_consen   72 VAEYYEKALERGKHVVTANKGALADEALYEELREAARKNGVR  113 (117)
T ss_dssp             HHHHHHHHHHTTCEEEES-HHHHHSHHHHHHHHHHHHHHT-E
T ss_pred             HHHHHHHHHHCCCeEEEECHHHhhhHHHHHHHHHHHHHcCCE
Confidence            9999999999999999977743  448889999999998863

Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....

>PRK13301 putative L-aspartate dehydrogenase; Provisional

Probab=99.31  E-value=3.4e-11  Score=100.48  Aligned_cols=109  Identities=8%  Similarity=0.146  Sum_probs=90.1

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhc--CCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEE
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~--~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVID  112 (163)
                      .+||+|+| +|.||+.+++.+...  ++++|+++.++..  .....+.+     .+++++|+++++.     .++|+|++
T Consensus         2 ~~rvgiIG-~GaIG~~va~~l~~~~~~~~~l~~V~~~~~--~~~~~~~~-----~~~~~~~l~~ll~-----~~~DlVVE   68 (267)
T PRK13301          2 THRIAFIG-LGAIASDVAAGLLADAAQPCQLAALTRNAA--DLPPALAG-----RVALLDGLPGLLA-----WRPDLVVE   68 (267)
T ss_pred             ceEEEEEC-ccHHHHHHHHHHhcCCCCceEEEEEecCCH--HHHHHhhc-----cCcccCCHHHHhh-----cCCCEEEE
Confidence            47999999 699999999998753  4599999988643  22223321     2678899999876     59999999


Q ss_pred             ccCchhHHHHHHHHHHcCCcEEEeCCC--CCHHHHHHHHHHhhhcC
Q 031216          113 FTDASTVYDNVKQATAFGMRSVVYVPH--IQLETVSALSAFCDKAS  156 (163)
Q Consensus       113 fT~p~~~~~~~~~al~~G~~vVigttg--~~~e~~~~L~~~A~~~~  156 (163)
                      +..|+.+.+|....|++|+++++..+|  .|++..++|.++|++.+
T Consensus        69 ~A~~~av~e~~~~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~~g  114 (267)
T PRK13301         69 AAGQQAIAEHAEGCLTAGLDMIICSAGALADDALRARLIAAAEAGG  114 (267)
T ss_pred             CCCHHHHHHHHHHHHhcCCCEEEEChhHhcCHHHHHHHHHHHHhCC
Confidence            999999999999999999999999986  37788899999999865

>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=99.30  E-value=1.8e-11  Score=105.16  Aligned_cols=97  Identities=23%  Similarity=0.267  Sum_probs=75.7

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC---------Ccchhh----hcc-CCCCCCcceeCCHHHHHhc
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV---------GEDIGM----VCD-MEQPLEIPVMSDLTMVLGS  100 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~---------g~~~~~----l~g-~~~~~gi~v~~~l~ell~~  100 (163)
                      |+||+|+|+ |+|||.+++.+.++++++|+|+.|+...         |.+...    ... . ...++.+++++++++. 
T Consensus         1 ~ikVaI~G~-GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~-~~~~i~V~~~~~el~~-   77 (341)
T PRK04207          1 MIKVGVNGY-GTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAF-EEAGIPVAGTIEDLLE-   77 (341)
T ss_pred             CeEEEEECC-CHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccc-cCCceEEcCChhHhhc-
Confidence            689999995 9999999999999999999999995321         221100    000 1 1235778888888874 


Q ss_pred             ccccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeCCC
Q 031216          101 ISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPH  139 (163)
Q Consensus       101 ~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigttg  139 (163)
                           ++|+|+|||.+..+.+++..++++|+++|.-.+.
T Consensus        78 -----~vDVVIdaT~~~~~~e~a~~~~~aGk~VI~~~~~  111 (341)
T PRK04207         78 -----KADIVVDATPGGVGAKNKELYEKAGVKAIFQGGE  111 (341)
T ss_pred             -----cCCEEEECCCchhhHHHHHHHHHCCCEEEEcCCC
Confidence                 7999999999999999999999999999985543

>PRK08374 homoserine dehydrogenase; Provisional

Probab=99.27  E-value=3.7e-11  Score=103.10  Aligned_cols=124  Identities=15%  Similarity=0.158  Sum_probs=88.4

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcC---------CcEEEEEEecC-----CCCcchhhhccCCCCCC-ccee--------
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKAR---------GMEVAGAIDSH-----SVGEDIGMVCDMEQPLE-IPVM--------   91 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~---------~~eLvgvid~~-----~~g~~~~~l~g~~~~~g-i~v~--------   91 (163)
                      ++||+|.| .|.+|+.+++.+.+..         +++|+++.|++     ..|-++.++.......+ +.-+        
T Consensus         2 ~i~VaIiG-~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~   80 (336)
T PRK08374          2 EVKVSIFG-FGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYN   80 (336)
T ss_pred             eeEEEEEC-CCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccC
Confidence            58999999 6999999999887631         48999999953     23444433321110111 0111        


Q ss_pred             CCHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhc--CeEEcCCC
Q 031216           92 SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKA--SMVSTGSV  163 (163)
Q Consensus        92 ~~l~ell~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~~--~Vv~tg~~  163 (163)
                      .++++++..    .++|||||+|.++.+.++...++++|+|||+++++.-....++|.++|++.  .++|+++|
T Consensus        81 ~~~~ell~~----~~~DVvVd~t~~~~a~~~~~~al~~G~~VVtanK~~la~~~~el~~la~~~~~~~~~ea~v  150 (336)
T PRK08374         81 FSPEEIVEE----IDADIVVDVTNDKNAHEWHLEALKEGKSVVTSNKPPIAFHYDELLDLANERNLPYLFEATV  150 (336)
T ss_pred             CCHHHHHhc----CCCCEEEECCCcHHHHHHHHHHHhhCCcEEECCHHHHHhCHHHHHHHHHHcCCeEEEeccc
Confidence            177888853    589999999999999999999999999999999873334556777777774  57777764

>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating)

Probab=99.24  E-value=7.4e-11  Score=99.44  Aligned_cols=97  Identities=15%  Similarity=0.210  Sum_probs=77.9

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcce-eCCHHHHHhcccccCCccEEEEc
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDLTMVLGSISQSKARAVVIDF  113 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v-~~~l~ell~~~~~~~~~DVVIDf  113 (163)
                      ++||+|+| +|+||+.++..+.+.+++++++++|++.... .-.+.   ...|++. +++++++++.    +++|+|+++
T Consensus         1 klrVAIIG-~G~IG~~h~~~ll~~~~~elvaV~d~d~es~-~la~A---~~~Gi~~~~~~~e~ll~~----~dIDaV~ia   71 (285)
T TIGR03215         1 KVKVAIIG-SGNIGTDLMYKLLRSEHLEMVAMVGIDPESD-GLARA---RELGVKTSAEGVDGLLAN----PDIDIVFDA   71 (285)
T ss_pred             CcEEEEEe-CcHHHHHHHHHHHhCCCcEEEEEEeCCcccH-HHHHH---HHCCCCEEECCHHHHhcC----CCCCEEEEC
Confidence            47999999 5999999988888899999999999643211 00121   1457765 5689999874    689999999


Q ss_pred             cCchhHHHHHHHHHHcCCcEEEeCCCC
Q 031216          114 TDASTVYDNVKQATAFGMRSVVYVPHI  140 (163)
Q Consensus       114 T~p~~~~~~~~~al~~G~~vVigttg~  140 (163)
                      |.+..+.+++..++++|+||+..||.+
T Consensus        72 Tp~~~H~e~a~~al~aGk~VIdekPa~   98 (285)
T TIGR03215        72 TSAKAHARHARLLAELGKIVIDLTPAA   98 (285)
T ss_pred             CCcHHHHHHHHHHHHcCCEEEECCccc
Confidence            999999999999999999999999854

Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=99.21  E-value=1.5e-10  Score=85.31  Aligned_cols=95  Identities=17%  Similarity=0.189  Sum_probs=71.4

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC-CCcchhhhccCCCC-CCcceeC-CHHHHHhcccccCCccEEEEc
Q 031216           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-VGEDIGMVCDMEQP-LEIPVMS-DLTMVLGSISQSKARAVVIDF  113 (163)
Q Consensus        37 rV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~-~g~~~~~l~g~~~~-~gi~v~~-~l~ell~~~~~~~~~DVVIDf  113 (163)
                      ||+|+||+|++|+.+++.|.++|.++++.+++++. .|++.....+.... .+..+.+ +.++ +      .+.|+|+.+
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~------~~~Dvvf~a   73 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEE-L------SDVDVVFLA   73 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHH-H------TTESEEEE-
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhH-h------hcCCEEEec
Confidence            79999999999999999999999999999999776 78887776542101 1223333 3333 3      399999966


Q ss_pred             cCchhHHHHHHHHHHcCCcEEEeCC
Q 031216          114 TDASTVYDNVKQATAFGMRSVVYVP  138 (163)
Q Consensus       114 T~p~~~~~~~~~al~~G~~vVigtt  138 (163)
                      +......+++..+++.|+.||=-++
T Consensus        74 ~~~~~~~~~~~~~~~~g~~ViD~s~   98 (121)
T PF01118_consen   74 LPHGASKELAPKLLKAGIKVIDLSG   98 (121)
T ss_dssp             SCHHHHHHHHHHHHHTTSEEEESSS
T ss_pred             CchhHHHHHHHHHhhCCcEEEeCCH
Confidence            6666678999999999998775333

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>PRK08300 acetaldehyde dehydrogenase; Validated

Probab=99.20  E-value=1.1e-10  Score=99.12  Aligned_cols=98  Identities=19%  Similarity=0.265  Sum_probs=79.1

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcce-eCCHHHHHhccccc---CCccE
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDLTMVLGSISQS---KARAV  109 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v-~~~l~ell~~~~~~---~~~DV  109 (163)
                      +++||+|+| +|++|+.++..+.+.+++++++++|++... +.....   ...|++. |++++++++    +   .++|+
T Consensus         3 ~klrVAIIG-tG~IGt~hm~~l~~~~~velvAVvdid~es-~gla~A---~~~Gi~~~~~~ie~LL~----~~~~~dIDi   73 (302)
T PRK08300          3 SKLKVAIIG-SGNIGTDLMIKILRSEHLEPGAMVGIDPES-DGLARA---RRLGVATSAEGIDGLLA----MPEFDDIDI   73 (302)
T ss_pred             CCCeEEEEc-CcHHHHHHHHHHhcCCCcEEEEEEeCChhh-HHHHHH---HHcCCCcccCCHHHHHh----CcCCCCCCE
Confidence            469999999 799999999998889999999999965321 111111   1467776 589999996    2   47999


Q ss_pred             EEEccCchhHHHHHHHHHHcCCcEEEeCCCC
Q 031216          110 VIDFTDASTVYDNVKQATAFGMRSVVYVPHI  140 (163)
Q Consensus       110 VIDfT~p~~~~~~~~~al~~G~~vVigttg~  140 (163)
                      |+|+|.+..+.+++..++++|+++|..|+.+
T Consensus        74 Vf~AT~a~~H~e~a~~a~eaGk~VID~sPA~  104 (302)
T PRK08300         74 VFDATSAGAHVRHAAKLREAGIRAIDLTPAA  104 (302)
T ss_pred             EEECCCHHHHHHHHHHHHHcCCeEEECCccc
Confidence            9999999999999999999999999998843

>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]

Probab=99.16  E-value=3.7e-10  Score=92.36  Aligned_cols=109  Identities=17%  Similarity=0.209  Sum_probs=88.0

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhc-CCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~-~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT  114 (163)
                      ++|+++| +|.+|+.+++.+.+- -++++++++|+..  +++.++..   ..+....+++|++++      .+|+++++.
T Consensus         1 l~vgiVG-cGaIG~~l~e~v~~~~~~~e~v~v~D~~~--ek~~~~~~---~~~~~~~s~ide~~~------~~DlvVEaA   68 (255)
T COG1712           1 LKVGIVG-CGAIGKFLLELVRDGRVDFELVAVYDRDE--EKAKELEA---SVGRRCVSDIDELIA------EVDLVVEAA   68 (255)
T ss_pred             CeEEEEe-ccHHHHHHHHHHhcCCcceeEEEEecCCH--HHHHHHHh---hcCCCccccHHHHhh------ccceeeeeC
Confidence            5899999 699999999998754 4699999999753  23333321   223333489999984      999999999


Q ss_pred             CchhHHHHHHHHHHcCCcEEEeCCC-C-CHHHHHHHHHHhhhcC
Q 031216          115 DASTVYDNVKQATAFGMRSVVYVPH-I-QLETVSALSAFCDKAS  156 (163)
Q Consensus       115 ~p~~~~~~~~~al~~G~~vVigttg-~-~~e~~~~L~~~A~~~~  156 (163)
                      .|+++.+|+..++++|+++++..+| | +++..+++.++|+..+
T Consensus        69 S~~Av~e~~~~~L~~g~d~iV~SVGALad~~l~erl~~lak~~~  112 (255)
T COG1712          69 SPEAVREYVPKILKAGIDVIVMSVGALADEGLRERLRELAKCGG  112 (255)
T ss_pred             CHHHHHHHhHHHHhcCCCEEEEechhccChHHHHHHHHHHhcCC
Confidence            9999999999999999999998886 3 6778889999999854

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=99.14  E-value=4.5e-10  Score=108.12  Aligned_cols=117  Identities=19%  Similarity=0.122  Sum_probs=91.8

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcE------------EEEEEecCCCCcchhhhccCCCCCC---cce-eCCHHHH
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGME------------VAGAIDSHSVGEDIGMVCDMEQPLE---IPV-MSDLTMV   97 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~e------------Lvgvid~~~~g~~~~~l~g~~~~~g---i~v-~~~l~el   97 (163)
                      +|.||+|+|| |+||+.+++.+.+.++.+            ++.++|...  .++..+...  ..+   +.+ +.|.+++
T Consensus       568 ~~~rIlVLGA-G~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~--~~a~~la~~--~~~~~~v~lDv~D~e~L  642 (1042)
T PLN02819        568 KSQNVLILGA-GRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYL--KDAKETVEG--IENAEAVQLDVSDSESL  642 (1042)
T ss_pred             cCCcEEEECC-CHHHHHHHHHHHhCcCccccccccccccccEEEEECCCH--HHHHHHHHh--cCCCceEEeecCCHHHH
Confidence            5789999995 999999999999999887            788888543  222333210  012   444 6788887


Q ss_pred             HhcccccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeEEc
Q 031216           98 LGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVST  160 (163)
Q Consensus        98 l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv~t  160 (163)
                      .+.+   .++|+||.++++..+.+.++.|+++|+|+|+.+  ++.++..+|.+.|+++++.+-
T Consensus       643 ~~~v---~~~DaVIsalP~~~H~~VAkaAieaGkHvv~ek--y~~~e~~~L~e~Ak~AGV~~m  700 (1042)
T PLN02819        643 LKYV---SQVDVVISLLPASCHAVVAKACIELKKHLVTAS--YVSEEMSALDSKAKEAGITIL  700 (1042)
T ss_pred             HHhh---cCCCEEEECCCchhhHHHHHHHHHcCCCEEECc--CCHHHHHHHHHHHHHcCCEEE
Confidence            7522   369999999988889999999999999999977  788889999999999998763

>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated

Probab=99.11  E-value=6e-10  Score=95.74  Aligned_cols=100  Identities=19%  Similarity=0.123  Sum_probs=73.9

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhcc-CCCCCCcceeCCHHHHHhcccccCCccEEEE
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCD-MEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g-~~~~~gi~v~~~l~ell~~~~~~~~~DVVID  112 (163)
                      +|+||+|+||+|.+|+.+++.+.++|+++|++++++...|+.+.+..+ .. ......++++++...     .++|+|+.
T Consensus         1 ~m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~~~~~~~-~~~~~~~~~~~~~~~-----~~vD~Vf~   74 (343)
T PRK00436          1 MMIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSDVHPHLR-GLVDLVLEPLDPEIL-----AGADVVFL   74 (343)
T ss_pred             CCeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHHhCcccc-cccCceeecCCHHHh-----cCCCEEEE
Confidence            478999999999999999999999999999999986555555444322 10 000123556655432     47999997


Q ss_pred             ccCchhHHHHHHHHHHcCCcEEEeCCC
Q 031216          113 FTDASTVYDNVKQATAFGMRSVVYVPH  139 (163)
Q Consensus       113 fT~p~~~~~~~~~al~~G~~vVigttg  139 (163)
                      ++.+..+.+++..++++|++||--...
T Consensus        75 alP~~~~~~~v~~a~~aG~~VID~S~~  101 (343)
T PRK00436         75 ALPHGVSMDLAPQLLEAGVKVIDLSAD  101 (343)
T ss_pred             CCCcHHHHHHHHHHHhCCCEEEECCcc
Confidence            777777789999999999998864443

>COG3804 Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]

Probab=99.03  E-value=2.2e-09  Score=90.35  Aligned_cols=118  Identities=19%  Similarity=0.247  Sum_probs=96.7

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC--CCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccE-EE
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH--SVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV-VI  111 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~--~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DV-VI  111 (163)
                      -+++.++| +|..|...++.+..+|+++|||+.++.  +.|+|++++.|.. +.++...++++..++     ..+|. +.
T Consensus         2 ~~~vvqyG-tG~vGv~air~l~akpe~elvgawv~s~ak~Gkdlgelagl~-dlgV~a~~~~~avlA-----tl~~~~~y   74 (350)
T COG3804           2 SLRVVQYG-TGSVGVAAIRGLLAKPELELVGAWVHSAAKSGKDLGELAGLP-DLGVIATNSIDAVLA-----TLADAVIY   74 (350)
T ss_pred             CceeEEec-cchHHHHHHHHHHcCCCCceEEEEecCcccccccHHHhcCCC-CceeEeeccccccee-----ccccceee
Confidence            37899999 899999999999999999999999953  5799999999987 688888899998876     45554 44


Q ss_pred             EccCchhHHHHHHHHHHcCCcEEEeCC------CCCHHHHHHHHHHhhhcCe-EEcC
Q 031216          112 DFTDASTVYDNVKQATAFGMRSVVYVP------HIQLETVSALSAFCDKASM-VSTG  161 (163)
Q Consensus       112 DfT~p~~~~~~~~~al~~G~~vVigtt------g~~~e~~~~L~~~A~~~~V-v~tg  161 (163)
                      +.-.|.  .+...+++.+|++||.--+      ...+|..+++.++|+++|. .++|
T Consensus        75 ~~~~~~--~~~y~rlL~aGiNVv~~g~~l~yPw~~~PelaeKpl~lAaraGn~Tl~g  129 (350)
T COG3804          75 APLLPS--VDEYARLLRAGINVVTPGPVLQYPWFYPPELAEKPLELAARAGNATLHG  129 (350)
T ss_pred             ecccch--HHHHHHHHHcCCceeccCccccCCCcCChHHhhchHHHHHhcCCceEEe
Confidence            444563  7777889999999886422      3578999999999999998 5554

>PRK06392 homoserine dehydrogenase; Provisional

Probab=99.01  E-value=3.1e-09  Score=91.08  Aligned_cols=121  Identities=18%  Similarity=0.201  Sum_probs=84.6

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhc-------CCcEEEEEEecC-----CCCcchhhhccCCCC--CCcceeC--CHHHHHh
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKA-------RGMEVAGAIDSH-----SVGEDIGMVCDMEQP--LEIPVMS--DLTMVLG   99 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~-------~~~eLvgvid~~-----~~g~~~~~l~g~~~~--~gi~v~~--~l~ell~   99 (163)
                      +||+|+| +|.+|+.+++.+.+.       .+++++++.|+.     ..|-++.++.....+  ......+  ++++++.
T Consensus         1 mrVaIiG-fG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~ll~   79 (326)
T PRK06392          1 IRISIIG-LGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEIFE   79 (326)
T ss_pred             CEEEEEC-CCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHHhc
Confidence            5899999 699999999998764       578999999954     234444443211101  0011112  6778775


Q ss_pred             cccccCCccEEEEccCc-h---hHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCe--EEcCC
Q 031216          100 SISQSKARAVVIDFTDA-S---TVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASM--VSTGS  162 (163)
Q Consensus       100 ~~~~~~~~DVVIDfT~p-~---~~~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~V--v~tg~  162 (163)
                           .++|+|||+|.. +   ....+...++++|+|||+..-+.-....++|.++|+++++  .|.++
T Consensus        80 -----~~~DVvVE~t~~~~~g~~~~~~~~~aL~~G~hVVTaNKgalA~~~~eL~~lA~~~g~~~~~eat  143 (326)
T PRK06392         80 -----IKPDVIVDVTPASKDGIREKNLYINAFEHGIDVVTANKSGLANHWHDIMDSASKNRRIIRYEAT  143 (326)
T ss_pred             -----CCCCEEEECCCCCCcCchHHHHHHHHHHCCCEEEcCCHHHHHhhHHHHHHHHHHcCCeEEEeee
Confidence                 589999999942 2   2467889999999999987765445677899999998754  44444

>TIGR03855 NAD_NadX aspartate dehydrogenase

Probab=98.95  E-value=4.4e-09  Score=86.13  Aligned_cols=88  Identities=14%  Similarity=0.200  Sum_probs=72.6

Q ss_pred             CcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeCCC
Q 031216           60 GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPH  139 (163)
Q Consensus        60 ~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigttg  139 (163)
                      +++|++++|+..  .+..++..   .+++++|+|+++++.     .++|+|+.+|++..+.+++..++++|+|+++.+++
T Consensus         1 ~~eLvaV~D~~~--e~a~~~a~---~~g~~~~~d~~eLl~-----~~vDaVviatp~~~H~e~a~~aL~aGkhVl~~s~g   70 (229)
T TIGR03855         1 NFEIAAVYDRNP--KDAKELAE---RCGAKIVSDFDEFLP-----EDVDIVVEAASQEAVKEYAEKILKNGKDLLIMSVG   70 (229)
T ss_pred             CeEEEEEECCCH--HHHHHHHH---HhCCceECCHHHHhc-----CCCCEEEECCChHHHHHHHHHHHHCCCCEEEECCc
Confidence            478999999653  22233332   456788999999986     48999999999999999999999999999999985


Q ss_pred             -C-CHHHHHHHHHHhhhcCe
Q 031216          140 -I-QLETVSALSAFCDKASM  157 (163)
Q Consensus       140 -~-~~e~~~~L~~~A~~~~V  157 (163)
                       + +.++.++|.++|++.|.
T Consensus        71 Alad~e~~~~l~~aA~~~g~   90 (229)
T TIGR03855        71 ALADRELRERLREVARSSGR   90 (229)
T ss_pred             ccCCHHHHHHHHHHHHhcCC
Confidence             4 67899999999999764

Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.

>PRK06813 homoserine dehydrogenase; Validated

Probab=98.80  E-value=5.4e-08  Score=84.12  Aligned_cols=125  Identities=16%  Similarity=0.171  Sum_probs=82.1

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcC---------CcEEEEEEecCC-----CCcchhhhccCCC-CCCc--ceeCCHHHH
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKAR---------GMEVAGAIDSHS-----VGEDIGMVCDMEQ-PLEI--PVMSDLTMV   97 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~---------~~eLvgvid~~~-----~g~~~~~l~g~~~-~~gi--~v~~~l~el   97 (163)
                      +++|+++| .|.+|+.+++.+.+..         +++|+++++++.     .|-+..+++.... ....  ....+.++.
T Consensus         2 ~i~I~liG-~G~VG~~~~~~L~~~~~~l~~~~g~~l~v~~i~~~~~~~~~~~gi~~~~~l~~~~~~~~~~~~~~~~~~~~   80 (346)
T PRK06813          2 KIKVVLSG-YGTVGREFIKLLNEKYLYINETYGIDLVVSGVLGRNVAIHNEDGLSIHHLLRYGGGSCAIEKYIEHHPEER   80 (346)
T ss_pred             eeEEEEEe-cChhHHHHHHHHHHhHHHHHHhcCCcEEEEEEEecchhhccccCCChhhhhhccccccchhhhhccChHHH
Confidence            58999999 7999999999987543         678999998531     1333333221100 0000  012233443


Q ss_pred             HhcccccCCccEEEEccCc-----hhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCe--EEcCCC
Q 031216           98 LGSISQSKARAVVIDFTDA-----STVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASM--VSTGSV  163 (163)
Q Consensus        98 l~~~~~~~~~DVVIDfT~p-----~~~~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~V--v~tg~~  163 (163)
                      +..   ..++|||||+|..     +...++++.++++|+|||...-+.-....++|.++|+++++  .|.+||
T Consensus        81 ~~~---~~~~dVvVe~T~s~~~~~e~a~~~~~~aL~~G~hVVTANK~~la~~~~eL~~lA~~~g~~~~yEasV  150 (346)
T PRK06813         81 ATD---NISGTVLVESTVTNLKDGNPGKQYIKQAIEKKMDIVAISKGALVTNWREINEAAKIANVRIRYSGAT  150 (346)
T ss_pred             hcC---CCCCCEEEECCCCccCCchHHHHHHHHHHHCCCeEEcCCcHHHhccHHHHHHHHHHcCCeEEEeeee
Confidence            321   1268999999854     34578999999999999987776555667899999998654  444443

>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form

Probab=98.77  E-value=6.8e-08  Score=83.22  Aligned_cols=96  Identities=18%  Similarity=0.177  Sum_probs=66.7

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-CCCcchhhhcc-CCCCCCcceeC--CHHHHHhcccccCCccEEE
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-SVGEDIGMVCD-MEQPLEIPVMS--DLTMVLGSISQSKARAVVI  111 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~-~~g~~~~~l~g-~~~~~gi~v~~--~l~ell~~~~~~~~~DVVI  111 (163)
                      +||+|+||+|.+|+++++.+.++|+++++++++++ ..|+.+.+..+ +....+. .+.  +.+++..      ++|+|+
T Consensus         1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~-~~~~~~~~~~~~------~~DvVf   73 (346)
T TIGR01850         1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDL-NLEPIDEEEIAE------DADVVF   73 (346)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCc-eeecCCHHHhhc------CCCEEE
Confidence            58999999999999999999999999999887743 35665554332 1000011 233  4455442      799999


Q ss_pred             EccCchhHHHHHHHHHHcCCcEEEeCC
Q 031216          112 DFTDASTVYDNVKQATAFGMRSVVYVP  138 (163)
Q Consensus       112 DfT~p~~~~~~~~~al~~G~~vVigtt  138 (163)
                      -++....+.+++..++++|++||--..
T Consensus        74 ~alP~~~s~~~~~~~~~~G~~VIDlS~  100 (346)
T TIGR01850        74 LALPHGVSAELAPELLAAGVKVIDLSA  100 (346)
T ss_pred             ECCCchHHHHHHHHHHhCCCEEEeCCh
Confidence            444444557888999999999885443

This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.

>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases

Probab=98.76  E-value=1.2e-07  Score=67.33  Aligned_cols=90  Identities=23%  Similarity=0.303  Sum_probs=70.3

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEc
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDf  113 (163)
                      ++.||+|+|+ |++|+.++....+..++++++++|...  .+.++.     -.++|+|++++++.+.    .++|+.|.+
T Consensus         2 k~~~v~ivGa-g~~G~a~~~~~~~~~g~~i~~~~dv~~--~~~G~~-----i~gipV~~~~~~l~~~----~~i~iaii~   69 (96)
T PF02629_consen    2 KKTNVIIVGA-GNLGRALLYNGFSMRGFGIVAVFDVDP--EKIGKE-----IGGIPVYGSMDELEEF----IEIDIAIIT   69 (96)
T ss_dssp             TTEEEEEETT-TSHHHHHHHHHHHHHCECEEEEEEECT--TTTTSE-----ETTEEEESSHHHHHHH----CTTSEEEEE
T ss_pred             CCCeEEEECC-CCcHHHHHHhHHHHcCCCCEEEEEcCC--CccCcE-----ECCEEeeccHHHhhhh----hCCCEEEEE
Confidence            5689999995 999999887777889999999999543  122221     3479999999999874    249998877


Q ss_pred             cCchhHHHHHHHHHHcCCcEEE
Q 031216          114 TDASTVYDNVKQATAFGMRSVV  135 (163)
Q Consensus       114 T~p~~~~~~~~~al~~G~~vVi  135 (163)
                      .+++.+.+.+..+++.|++.|.
T Consensus        70 VP~~~a~~~~~~~~~~gIk~i~   91 (96)
T PF02629_consen   70 VPAEAAQEVADELVEAGIKGIV   91 (96)
T ss_dssp             S-HHHHHHHHHHHHHTT-SEEE
T ss_pred             cCHHHHHHHHHHHHHcCCCEEE
Confidence            7777788999999999988775

; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....

>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=98.73  E-value=8.9e-08  Score=82.43  Aligned_cols=97  Identities=16%  Similarity=0.177  Sum_probs=69.4

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEE-EecCCCCcchhhhccCCC-----C--CCccee-CCHHHHHhcccccC
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGA-IDSHSVGEDIGMVCDMEQ-----P--LEIPVM-SDLTMVLGSISQSK  105 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgv-id~~~~g~~~~~l~g~~~-----~--~gi~v~-~~l~ell~~~~~~~  105 (163)
                      |+||+|+|++|.+|+++++.+.++|+++|+++ .++...|++..++.+...     .  ....+. .++++ +.      
T Consensus         3 ~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~------   75 (349)
T PRK08664          3 KLKVGILGATGMVGQRFVQLLANHPWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDPEA-VD------   75 (349)
T ss_pred             CcEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChhhcCCcccccccccccccccccccceEEEeCCHHH-hc------
Confidence            58999999999999999999999999999998 444456766654432100     0  112222 24444 32      


Q ss_pred             CccEEEEccCchhHHHHHHHHHHcCCcEEEeCC
Q 031216          106 ARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP  138 (163)
Q Consensus       106 ~~DVVIDfT~p~~~~~~~~~al~~G~~vVigtt  138 (163)
                      ++|+|++++......+++..+.+.|+.+|.-+.
T Consensus        76 ~~DvVf~a~p~~~s~~~~~~~~~~G~~vIDls~  108 (349)
T PRK08664         76 DVDIVFSALPSDVAGEVEEEFAKAGKPVFSNAS  108 (349)
T ss_pred             CCCEEEEeCChhHHHHHHHHHHHCCCEEEECCc
Confidence            899999776666668888888899999886443

>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms)

Probab=98.73  E-value=8.3e-08  Score=82.39  Aligned_cols=95  Identities=17%  Similarity=0.155  Sum_probs=67.2

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-CCCcchhhhccC------CCCCCcceeCCHHHHHhcccccCCcc
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-SVGEDIGMVCDM------EQPLEIPVMSDLTMVLGSISQSKARA  108 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~-~~g~~~~~l~g~------~~~~gi~v~~~l~ell~~~~~~~~~D  108 (163)
                      +||+|+|++|+||+.+++.+.++++++|++++++. ..|++..++...      .....-..+.++++...     .++|
T Consensus         1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~D   75 (341)
T TIGR00978         1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPIVEPEPVAS-----KDVD   75 (341)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEEChhhcCCcchhhccccccCCCccccceeEEEeCCHHHh-----ccCC
Confidence            58999999999999999999999999999998753 456666544321      00000012223332222     3899


Q ss_pred             EEEEccCchhHHHHHHHHHHcCCcEEE
Q 031216          109 VVIDFTDASTVYDNVKQATAFGMRSVV  135 (163)
Q Consensus       109 VVIDfT~p~~~~~~~~~al~~G~~vVi  135 (163)
                      +|+.++.+..+.++...+.+.|+++|.
T Consensus        76 vVf~a~p~~~s~~~~~~~~~~G~~VID  102 (341)
T TIGR00978        76 IVFSALPSEVAEEVEPKLAEAGKPVFS  102 (341)
T ss_pred             EEEEeCCHHHHHHHHHHHHHCCCEEEE
Confidence            999777667778899999999999885

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.

>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]

Probab=98.69  E-value=1.6e-07  Score=80.85  Aligned_cols=113  Identities=16%  Similarity=0.109  Sum_probs=80.8

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhc---------CCcEEEEEEecCCCCcchhhhccCCCCCC-cceeCCH-----HHHH
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKA---------RGMEVAGAIDSHSVGEDIGMVCDMEQPLE-IPVMSDL-----TMVL   98 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~---------~~~eLvgvid~~~~g~~~~~l~g~~~~~g-i~v~~~l-----~ell   98 (163)
                      +++||+|+| .|.+|+.+++.+.++         -+++++++.+++..-.+  .+-    ..+ ....+++     .+++
T Consensus         2 ~~v~v~l~G-~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~~~~~~--~~~----~~~~~~~~~~~~~~~~~~~~   74 (333)
T COG0460           2 KTVKVGLLG-LGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRDGSLVR--DLD----LLNAEVWTTDGALSLGDEVL   74 (333)
T ss_pred             ceEEEEEEc-cCchhHHHHHHHHHhHHHHHhhcCCceEEEEEEeccchhcc--ccc----ccchhhheecccccccHhhh
Confidence            468999999 799999999999875         47899999996421111  000    111 2223444     4444


Q ss_pred             hcccccCCccEEEEccCc--hhH--HHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCe
Q 031216           99 GSISQSKARAVVIDFTDA--STV--YDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASM  157 (163)
Q Consensus        99 ~~~~~~~~~DVVIDfT~p--~~~--~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~V  157 (163)
                      .    +..+|+|++.+..  +..  .++.+.++++|+|||...-..-.....+|.++|+++++
T Consensus        75 ~----~~~~dvvve~~~~d~~~~~~~~~~~~al~~GkhVVTaNK~~lA~~~~el~~~A~~~g~  133 (333)
T COG0460          75 L----DEDIDVVVELVGGDVEPAEPADLYLKALENGKHVVTANKALLALHYHELREAAEKNGV  133 (333)
T ss_pred             c----cccCCEEEecCcccCCchhhHHHHHHHHHcCCeEECCCchHhHhhHHHHHHHHHHhCC
Confidence            4    2799999998743  333  48999999999999987776656678999999999773

>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase

Probab=98.64  E-value=2.5e-07  Score=80.89  Aligned_cols=106  Identities=12%  Similarity=0.139  Sum_probs=68.0

Q ss_pred             eeeccCCCC-CCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHH-Hhcc
Q 031216           24 FISCSTNPP-QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMV-LGSI  101 (163)
Q Consensus        24 ~~~~~~~~~-~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~el-l~~~  101 (163)
                      +++.+..+- .+++||+|+||+|+.|+++++.+.++|+++|+.+..+...|+.+.+............+.++++. +   
T Consensus        26 ~~~~~~~~~~~~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~---  102 (381)
T PLN02968         26 VSSASSSVKSEEKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADF---  102 (381)
T ss_pred             cccCCCccccccccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHh---
Confidence            444444333 35679999999999999999999999999999988765556543332110001112222334433 3   


Q ss_pred             cccCCccEEEEccCchhH-HHHHHHHHHcCCcEEEeC
Q 031216          102 SQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYV  137 (163)
Q Consensus       102 ~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigt  137 (163)
                         .+.|+|+ ++.|+.. .+++.. ++.|+.||-=+
T Consensus       103 ---~~~DvVf-~Alp~~~s~~i~~~-~~~g~~VIDlS  134 (381)
T PLN02968        103 ---SDVDAVF-CCLPHGTTQEIIKA-LPKDLKIVDLS  134 (381)
T ss_pred             ---cCCCEEE-EcCCHHHHHHHHHH-HhCCCEEEEcC
Confidence               3799999 6667655 455555 57888776533

>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional

Probab=98.62  E-value=7.8e-07  Score=76.23  Aligned_cols=88  Identities=18%  Similarity=0.202  Sum_probs=62.7

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHh--cCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHH-HHHhcccccCCccEEE
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTK--ARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLT-MVLGSISQSKARAVVI  111 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~--~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~-ell~~~~~~~~~DVVI  111 (163)
                      |+||+|+||+|+.|+++++.+.+  +|.++|+++...+..|+... +.    ...+.+ .+++ ..+      ..+|+||
T Consensus         1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~-~~----g~~i~v-~d~~~~~~------~~vDvVf   68 (334)
T PRK14874          1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELS-FK----GKELKV-EDLTTFDF------SGVDIAL   68 (334)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeee-eC----CceeEE-eeCCHHHH------cCCCEEE
Confidence            57999999999999999999998  79999999877655565433 11    112333 3333 233      3799999


Q ss_pred             EccCchhHHHHHHHHHHcCCcEE
Q 031216          112 DFTDASTVYDNVKQATAFGMRSV  134 (163)
Q Consensus       112 DfT~p~~~~~~~~~al~~G~~vV  134 (163)
                      .++......+++...+++|+.||
T Consensus        69 ~A~g~g~s~~~~~~~~~~G~~VI   91 (334)
T PRK14874         69 FSAGGSVSKKYAPKAAAAGAVVI   91 (334)
T ss_pred             ECCChHHHHHHHHHHHhCCCEEE
Confidence            44444445788888999999665

>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional

Probab=98.58  E-value=1.3e-06  Score=74.73  Aligned_cols=115  Identities=13%  Similarity=0.151  Sum_probs=89.4

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEc
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDf  113 (163)
                      +..||.|-|.+|+-|+.|.+...+. +-++|+.+.+..-|..   +.    ..|+|+|++++|+.+.    ..+|+.+.|
T Consensus        28 ~~t~v~vqGitg~~g~~h~~~~~~y-gt~iv~GV~Pgkgg~~---v~----~~Gvpvy~sv~ea~~~----~~~D~avI~   95 (317)
T PTZ00187         28 KNTKVICQGITGKQGTFHTEQAIEY-GTKMVGGVNPKKAGTT---HL----KHGLPVFATVKEAKKA----TGADASVIY   95 (317)
T ss_pred             CCCeEEEecCCChHHHHHHHHHHHh-CCcEEEEECCCCCCce---Ee----cCCccccCCHHHHhcc----cCCCEEEEe
Confidence            3479999999999999999998865 8899999987554432   11    1278999999999863    459999989


Q ss_pred             cCchhHHHHHHHHHHcCCcEEEe-CCCCCHHHHHHHHHHhh-hcCeEEc
Q 031216          114 TDASTVYDNVKQATAFGMRSVVY-VPHIQLETVSALSAFCD-KASMVST  160 (163)
Q Consensus       114 T~p~~~~~~~~~al~~G~~vVig-ttg~~~e~~~~L~~~A~-~~~Vv~t  160 (163)
                      .+|..+.+.+..|.++|++.++- |.|+...+..+|+++++ +.++..-
T Consensus        96 VPa~~v~dai~Ea~~aGI~~~ViiteGfpe~d~~~l~~~~~~~~g~rli  144 (317)
T PTZ00187         96 VPPPHAASAIIEAIEAEIPLVVCITEGIPQHDMVKVKHALLSQNKTRLI  144 (317)
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEEECCCCchhhHHHHHHHHhhcCCCEEE
Confidence            99999999999999999888544 55887766667777764 4565443

>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=98.58  E-value=4.3e-07  Score=78.20  Aligned_cols=90  Identities=13%  Similarity=0.141  Sum_probs=65.0

Q ss_pred             CCCeeEEEEcCCCHHHHHHHHHHH--hcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHH-HHhcccccCCccE
Q 031216           33 QSNIKVIINGAVKEIGRAAVIAVT--KARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTM-VLGSISQSKARAV  109 (163)
Q Consensus        33 ~~~irV~VvGa~G~mG~~i~~~i~--~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~e-ll~~~~~~~~~DV  109 (163)
                      ++|+||+|+||+|..|+++++.+.  .+|..+|+.+.+....|+.+. +.+    .... +.++++ .+.      ++|+
T Consensus         2 ~~~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~~~aG~~l~-~~~----~~l~-~~~~~~~~~~------~vD~   69 (336)
T PRK05671          2 SQPLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASSESAGHSVP-FAG----KNLR-VREVDSFDFS------QVQL   69 (336)
T ss_pred             CCCCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECcccCCCeec-cCC----cceE-EeeCChHHhc------CCCE
Confidence            357999999999999999999999  689999999888666665544 111    1122 222222 233      8999


Q ss_pred             EEEccCchhHHHHHHHHHHcCCcEE
Q 031216          110 VIDFTDASTVYDNVKQATAFGMRSV  134 (163)
Q Consensus       110 VIDfT~p~~~~~~~~~al~~G~~vV  134 (163)
                      |+-++.+....+++..+.++|+.||
T Consensus        70 vFla~p~~~s~~~v~~~~~~G~~VI   94 (336)
T PRK05671         70 AFFAAGAAVSRSFAEKARAAGCSVI   94 (336)
T ss_pred             EEEcCCHHHHHHHHHHHHHCCCeEE
Confidence            9955544555788899999999887

>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=98.58  E-value=3.1e-07  Score=79.16  Aligned_cols=95  Identities=17%  Similarity=0.089  Sum_probs=68.5

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCC--CCccee-CCHHHHHhcccccCCccEE
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQP--LEIPVM-SDLTMVLGSISQSKARAVV  110 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~--~gi~v~-~~l~ell~~~~~~~~~DVV  110 (163)
                      +|+||+|+|++|+.|.++++.+..||++|+..+..+...|+.+.+..... .  .+.+.. -+.+++..     .++|+|
T Consensus         1 ~~~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~~~~g~~~~~~~p~l-~g~~~l~~~~~~~~~~~~-----~~~Dvv   74 (349)
T COG0002           1 MMIKVGIVGASGYTGLELLRLLAGHPDVELILISSRERAGKPVSDVHPNL-RGLVDLPFQTIDPEKIEL-----DECDVV   74 (349)
T ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCCeEEEEeechhhcCCchHHhCccc-ccccccccccCChhhhhc-----ccCCEE
Confidence            47999999999999999999999999999665555555788777765421 1  111111 23444422     479999


Q ss_pred             EEccCchhHHHHHHHHHHcCCcEE
Q 031216          111 IDFTDASTVYDNVKQATAFGMRSV  134 (163)
Q Consensus       111 IDfT~p~~~~~~~~~al~~G~~vV  134 (163)
                      |-+++.....+.+...++.|++||
T Consensus        75 FlalPhg~s~~~v~~l~~~g~~VI   98 (349)
T COG0002          75 FLALPHGVSAELVPELLEAGCKVI   98 (349)
T ss_pred             EEecCchhHHHHHHHHHhCCCeEE
Confidence            966655556899999999999965

>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional

Probab=98.57  E-value=8e-07  Score=75.98  Aligned_cols=92  Identities=15%  Similarity=0.167  Sum_probs=66.5

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEc
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDf  113 (163)
                      +|+||+|+||+|..|+++++.+.+||.++|+.+..+..  .+.               .+.++.+      .++|+|+ +
T Consensus         1 ~~~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~--~~~---------------~~~~~~~------~~~DvvF-l   56 (313)
T PRK11863          1 MKPKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKR--KDA---------------AARRELL------NAADVAI-L   56 (313)
T ss_pred             CCcEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCC--Ccc---------------cCchhhh------cCCCEEE-E
Confidence            47899999999999999999999999999998876431  110               1223344      3799999 5


Q ss_pred             cCchhH-HHHHHHHHHcCCcEE-------------EeCCCCCHHHHHHHH
Q 031216          114 TDASTV-YDNVKQATAFGMRSV-------------VYVPHIQLETVSALS  149 (163)
Q Consensus       114 T~p~~~-~~~~~~al~~G~~vV-------------igttg~~~e~~~~L~  149 (163)
                      +.|+.. .+++..+.+.|+.||             .|-|+++.++.++|+
T Consensus        57 alp~~~s~~~~~~~~~~g~~VIDlSadfRl~~~~~yglPEvn~~~~~~i~  106 (313)
T PRK11863         57 CLPDDAAREAVALIDNPATRVIDASTAHRTAPGWVYGFPELAPGQRERIA  106 (313)
T ss_pred             CCCHHHHHHHHHHHHhCCCEEEECChhhhcCCCCeEEcCccCHHHHHHhh
Confidence            556554 788888889999877             344455555555543

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=98.57  E-value=7.7e-07  Score=68.50  Aligned_cols=109  Identities=17%  Similarity=0.127  Sum_probs=71.9

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT  114 (163)
                      |.||+++| .|.||+.+++.+. ..++++. +.|+..  ....++.    ..++...++++++.+      ..|+|+-+.
T Consensus         1 m~~Ig~IG-lG~mG~~~a~~L~-~~g~~v~-~~d~~~--~~~~~~~----~~g~~~~~s~~e~~~------~~dvvi~~v   65 (163)
T PF03446_consen    1 MMKIGFIG-LGNMGSAMARNLA-KAGYEVT-VYDRSP--EKAEALA----EAGAEVADSPAEAAE------QADVVILCV   65 (163)
T ss_dssp             -BEEEEE---SHHHHHHHHHHH-HTTTEEE-EEESSH--HHHHHHH----HTTEEEESSHHHHHH------HBSEEEE-S
T ss_pred             CCEEEEEc-hHHHHHHHHHHHH-hcCCeEE-eeccch--hhhhhhH----HhhhhhhhhhhhHhh------cccceEeec
Confidence            78999999 7999999999997 5689987 578542  2333443    346778899999986      779988655


Q ss_pred             Cchh-HHHHHHH--H---HHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeEE
Q 031216          115 DAST-VYDNVKQ--A---TAFGMRSVVYVPHIQLETVSALSAFCDKASMVS  159 (163)
Q Consensus       115 ~p~~-~~~~~~~--a---l~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv~  159 (163)
                      .+.. +.+.+..  .   +..|. +++-.+..++++..++.+..++.++-|
T Consensus        66 ~~~~~v~~v~~~~~i~~~l~~g~-iiid~sT~~p~~~~~~~~~~~~~g~~~  115 (163)
T PF03446_consen   66 PDDDAVEAVLFGENILAGLRPGK-IIIDMSTISPETSRELAERLAAKGVRY  115 (163)
T ss_dssp             SSHHHHHHHHHCTTHGGGS-TTE-EEEE-SS--HHHHHHHHHHHHHTTEEE
T ss_pred             ccchhhhhhhhhhHHhhccccce-EEEecCCcchhhhhhhhhhhhhcccee
Confidence            4433 3444332  2   33444 455566778899999999998887765

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain

Probab=98.57  E-value=4.9e-07  Score=69.52  Aligned_cols=99  Identities=22%  Similarity=0.274  Sum_probs=60.5

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCC-------------------Cccee--CCH
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPL-------------------EIPVM--SDL   94 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~-------------------gi~v~--~~l   94 (163)
                      +||+|+| .|+||+.+++.+...++++|+++.|... .+...-++..++..                   .++++  .++
T Consensus         1 ikv~I~G-~GriGr~v~~~~~~~~~~~lvai~d~~~-~~~~a~ll~~Ds~hg~~~~~v~~~~~~l~i~g~~i~~~~~~~p   78 (149)
T smart00846        1 IKVGING-FGRIGRLVLRALLERPDIEVVAINDLTD-PETLAHLLKYDSVHGRFPGEVEVDEDGLIVNGKKIKVLAERDP   78 (149)
T ss_pred             CEEEEEC-cCHHHHHHHHHHHhCCCCEEEEeecCCC-HHHHHHHhcccCCCCCCCCcEEEeCCEEEECCEEEEEEecCCh
Confidence            5899999 5999999999999899999999998410 01111111000000                   11222  344


Q ss_pred             HHHHhcccccCCccEEEEccCchhHHHHHHHHHHcC-CcEEEeCCC
Q 031216           95 TMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFG-MRSVVYVPH  139 (163)
Q Consensus        95 ~ell~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G-~~vVigttg  139 (163)
                      +++...   +..+|+|||+|-.-...+.+...++.| +.||++.|.
T Consensus        79 ~~~~w~---~~gvDiVie~tG~f~~~~~~~~hl~~GakkViisap~  121 (149)
T smart00846       79 ANLPWK---ELGVDIVVECTGKFTTREKASAHLKAGAKKVIISAPA  121 (149)
T ss_pred             HHCccc---ccCCeEEEeccccccchHHHHHHHHcCCCEEEeCCCC
Confidence            444321   247899999974434445555667777 667776663

GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.

>PLN02383 aspartate semialdehyde dehydrogenase

Probab=98.56  E-value=1.6e-06  Score=74.93  Aligned_cols=90  Identities=14%  Similarity=0.169  Sum_probs=66.1

Q ss_pred             CCCCeeEEEEcCCCHHHHHHHHHHHh--cCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHH-HHHhcccccCCcc
Q 031216           32 PQSNIKVIINGAVKEIGRAAVIAVTK--ARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLT-MVLGSISQSKARA  108 (163)
Q Consensus        32 ~~~~irV~VvGa~G~mG~~i~~~i~~--~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~-ell~~~~~~~~~D  108 (163)
                      +..++||+|+||+|+.|+++++.+.+  +|..+|..+...+..|+.... -    .... .+.+++ +.+.      ++|
T Consensus         4 ~~~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~-~----~~~~-~v~~~~~~~~~------~~D   71 (344)
T PLN02383          4 TENGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTF-E----GRDY-TVEELTEDSFD------GVD   71 (344)
T ss_pred             cCCCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeee-c----Ccee-EEEeCCHHHHc------CCC
Confidence            34568999999999999999999998  899999988776566665443 1    1122 233333 3443      799


Q ss_pred             EEEEccCchhH-HHHHHHHHHcCCcEE
Q 031216          109 VVIDFTDASTV-YDNVKQATAFGMRSV  134 (163)
Q Consensus       109 VVIDfT~p~~~-~~~~~~al~~G~~vV  134 (163)
                      +|+ |+.|+.. .+++..+.+.|+.||
T Consensus        72 ~vf-~a~p~~~s~~~~~~~~~~g~~VI   97 (344)
T PLN02383         72 IAL-FSAGGSISKKFGPIAVDKGAVVV   97 (344)
T ss_pred             EEE-ECCCcHHHHHHHHHHHhCCCEEE
Confidence            999 6666654 788888889999887

>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]

Probab=98.55  E-value=6.8e-07  Score=75.17  Aligned_cols=114  Identities=18%  Similarity=0.290  Sum_probs=96.8

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEc
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDf  113 (163)
                      +..||.|-|.+|++|..|.+.+.+. +.++|+.+.+..-|..         -.+.|||++++|++.+    ..+|+-+.|
T Consensus         7 k~tkvivqGitg~~gtfh~~~~l~y-Gt~~V~GvtPgkgG~~---------~~g~PVf~tV~EA~~~----~~a~~svI~   72 (293)
T COG0074           7 KDTKVIVQGITGKQGTFHTEQMLAY-GTKIVGGVTPGKGGQT---------ILGLPVFNTVEEAVKE----TGANASVIF   72 (293)
T ss_pred             CCCeEEEeccccccchHHHHHHHHh-CCceeecccCCCCceE---------EcCccHHHHHHHHHHh----hCCCEEEEe
Confidence            3468999999999999999999987 9999999887544431         3468999999999985    789998889


Q ss_pred             cCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCeEEcC
Q 031216          114 TDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMVSTG  161 (163)
Q Consensus       114 T~p~~~~~~~~~al~~G~~vVigtt-g~~~e~~~~L~~~A~~~~Vv~tg  161 (163)
                      -+|..+.+-+..|+.+|+..|+--| +....+--++.+.+++.++..-|
T Consensus        73 Vp~~~aadai~EAida~i~liv~ITEgIP~~D~~~~~~~a~~~g~~iiG  121 (293)
T COG0074          73 VPPPFAADAILEAIDAGIKLVVIITEGIPVLDMLELKRYAREKGTRLIG  121 (293)
T ss_pred             cCcHHHHHHHHHHHhCCCcEEEEEeCCCCHHHHHHHHHHHHhcCCEEEC
Confidence            9999999999999999988876555 88888888999999998877655

>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate

Probab=98.55  E-value=2.1e-07  Score=71.79  Aligned_cols=100  Identities=25%  Similarity=0.270  Sum_probs=64.1

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC--------------CCcchhhhc--c--CC-CCCCccee--CCH
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS--------------VGEDIGMVC--D--ME-QPLEIPVM--SDL   94 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~--------------~g~~~~~l~--g--~~-~~~gi~v~--~~l   94 (163)
                      +||+|.| .||+||.++|.+...+++||+++-|...              .|.-..++.  +  +. ....+.++  .++
T Consensus         1 ikVgING-fGRIGR~v~r~~~~~~~~evvaInd~~~~~~~~a~LlkyDs~~G~~~~~v~~~~~~l~v~G~~I~~~~~~dp   79 (151)
T PF00044_consen    1 IKVGING-FGRIGRLVLRAALDQPDIEVVAINDPAPDPEYLAYLLKYDSVHGRFPGDVEVDDDGLIVNGKKIKVTEERDP   79 (151)
T ss_dssp             EEEEEES-TSHHHHHHHHHHHTSTTEEEEEEEESSSSHHHHHHHHHEETTTESGSSHEEEETTEEEETTEEEEEEHTSSG
T ss_pred             CEEEEEC-CCcccHHHHHhhcccceEEEEEEecccccchhhhhhhhccccccceecccccccceeEeecccccchhhhhh
Confidence            6999999 7999999999999999999999998431              111111110  0  00 00112222  333


Q ss_pred             HHHHhcccccCCccEEEEccCchhHHHHHHHHHHcC-CcEEEeCCC
Q 031216           95 TMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFG-MRSVVYVPH  139 (163)
Q Consensus        95 ~ell~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G-~~vVigttg  139 (163)
                      +++-..   +..+|+|+|+|-.-...+.+...+++| +.||++.|.
T Consensus        80 ~~i~W~---~~gvDiVvEcTG~f~~~~~~~~hl~~GakkViisap~  122 (151)
T PF00044_consen   80 EEIPWG---ELGVDIVVECTGKFRTRENAEAHLDAGAKKVIISAPS  122 (151)
T ss_dssp             GGSTHH---HHTESEEEETSSSTHSHHHHTHHHHTTESEEEESSS-
T ss_pred             cccccc---cccccEEEeccccceecccccccccccccceeecccc
Confidence            333221   247999999997777777777888888 556665553

The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....

>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II

Probab=98.55  E-value=2.6e-07  Score=79.60  Aligned_cols=94  Identities=21%  Similarity=0.172  Sum_probs=68.2

Q ss_pred             EEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC-CcchhhhccCC------------CCCCcceeCCHHHHHhccccc
Q 031216           38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-GEDIGMVCDME------------QPLEIPVMSDLTMVLGSISQS  104 (163)
Q Consensus        38 V~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~-g~~~~~l~g~~------------~~~gi~v~~~l~ell~~~~~~  104 (163)
                      |||+| +|++|+.+++.+...++++|+++.|.+.. ...+..+.+..            ...++.++.++++++.     
T Consensus         1 VaInG-~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~-----   74 (333)
T TIGR01546         1 VGVNG-YGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLE-----   74 (333)
T ss_pred             CEEEC-CcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhh-----
Confidence            68999 69999999999988999999999994321 00111211110            1335667789999984     


Q ss_pred             CCccEEEEccCchhHHHHHHHHHHcCCc-EEEeCC
Q 031216          105 KARAVVIDFTDASTVYDNVKQATAFGMR-SVVYVP  138 (163)
Q Consensus       105 ~~~DVVIDfT~p~~~~~~~~~al~~G~~-vVigtt  138 (163)
                       ++|+|+++|....+..+....++.|.+ ++++-+
T Consensus        75 -~vDiVve~Tp~~~~~~na~~~~~~GakaVl~~~p  108 (333)
T TIGR01546        75 -KVDIVVDATPGGIGAKNKPLYEKAGVKAIFQGGE  108 (333)
T ss_pred             -cCCEEEECCCCCCChhhHHHHHhCCcCEEEECCC
Confidence             799999998777778888888888854 455544

All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.

>PRK05678 succinyl-CoA synthetase subunit alpha; Validated

Probab=98.52  E-value=2.9e-06  Score=71.85  Aligned_cols=114  Identities=16%  Similarity=0.258  Sum_probs=86.4

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEc
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDf  113 (163)
                      .+-||.|+|.+|++|+.+.+.+.+. +.+.+..+.+.. +  ..+      -.|++.|.+++++.+.    ..+|+++.+
T Consensus         7 ~~~~~~v~~~~~~~g~~~l~~l~~~-g~~~v~pVnp~~-~--~~~------v~G~~~y~sv~dlp~~----~~~DlAvi~   72 (291)
T PRK05678          7 KDTKVIVQGITGKQGTFHTEQMLAY-GTNIVGGVTPGK-G--GTT------VLGLPVFNTVAEAVEA----TGANASVIY   72 (291)
T ss_pred             CCCeEEEeCCCchHHHHHHHHHHHC-CCCEEEEECCCC-C--CCe------EeCeeccCCHHHHhhc----cCCCEEEEE
Confidence            4578999999999999999999865 444554555431 0  012      2477899999999751    129999978


Q ss_pred             cCchhHHHHHHHHHHcCCcE-EEeCCCCCHHHHHHHHHHhhhcCeEEcC
Q 031216          114 TDASTVYDNVKQATAFGMRS-VVYVPHIQLETVSALSAFCDKASMVSTG  161 (163)
Q Consensus       114 T~p~~~~~~~~~al~~G~~v-Vigttg~~~e~~~~L~~~A~~~~Vv~tg  161 (163)
                      .+++.+.+.++.|.+.|++. ||-+.||..++.++|.++|++.++-.-|
T Consensus        73 vp~~~v~~~l~e~~~~gvk~avI~s~Gf~~~~~~~l~~~a~~~girvlG  121 (291)
T PRK05678         73 VPPPFAADAILEAIDAGIDLIVCITEGIPVLDMLEVKAYLERKKTRLIG  121 (291)
T ss_pred             cCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEEC
Confidence            88888899999999999766 5666799876667999999998876544

>PRK08040 putative semialdehyde dehydrogenase; Provisional

Probab=98.52  E-value=6.6e-07  Score=77.14  Aligned_cols=89  Identities=16%  Similarity=0.152  Sum_probs=67.6

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHh--cCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEE
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTK--ARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI  111 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~--~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVI  111 (163)
                      +.+||+|+||+|..|+++++.+.+  +|..+|..+.+.+..|+.+. +.    .....+. ++++...     .++|+++
T Consensus         3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~-~~----~~~~~v~-~~~~~~~-----~~~Dvvf   71 (336)
T PRK08040          3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLR-FG----GKSVTVQ-DAAEFDW-----SQAQLAF   71 (336)
T ss_pred             CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEE-EC----CcceEEE-eCchhhc-----cCCCEEE
Confidence            458999999999999999999998  89999999877666777665 21    1134443 5655432     3799988


Q ss_pred             EccCchhH-HHHHHHHHHcCCcEE
Q 031216          112 DFTDASTV-YDNVKQATAFGMRSV  134 (163)
Q Consensus       112 DfT~p~~~-~~~~~~al~~G~~vV  134 (163)
                       |+.|+.. .+++..+.++|+.||
T Consensus        72 -~a~p~~~s~~~~~~~~~~g~~VI   94 (336)
T PRK08040         72 -FVAGREASAAYAEEATNAGCLVI   94 (336)
T ss_pred             -ECCCHHHHHHHHHHHHHCCCEEE
Confidence             6656555 688899999999877

>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit

Probab=98.51  E-value=3.2e-06  Score=71.47  Aligned_cols=114  Identities=16%  Similarity=0.273  Sum_probs=88.6

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEc
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDf  113 (163)
                      +.-||.|.|.+|++|+.+.+.+... +..+++.+.+.. +.  .+      -.|++.|.+++++.+.    ..+|+++.+
T Consensus         5 ~~~~~~~~g~~~~~~~~~~~~~~~~-g~~~v~~V~p~~-~~--~~------v~G~~~y~sv~dlp~~----~~~Dlavi~   70 (286)
T TIGR01019         5 KDTKVIVQGITGSQGSFHTEQMLAY-GTNIVGGVTPGK-GG--TT------VLGLPVFDSVKEAVEE----TGANASVIF   70 (286)
T ss_pred             CCCcEEEecCCcHHHHHHHHHHHhC-CCCEEEEECCCC-Cc--ce------ecCeeccCCHHHHhhc----cCCCEEEEe
Confidence            4568999999999999999998754 666887776541 11  12      2478899999998751    138999978


Q ss_pred             cCchhHHHHHHHHHHcCCcEE-EeCCCCCHHHHHHHHHHhhhcCeEEcC
Q 031216          114 TDASTVYDNVKQATAFGMRSV-VYVPHIQLETVSALSAFCDKASMVSTG  161 (163)
Q Consensus       114 T~p~~~~~~~~~al~~G~~vV-igttg~~~e~~~~L~~~A~~~~Vv~tg  161 (163)
                      .+++.+.+.++.|.+.|++.+ +-+.||.+.+.++|.++|++.++-+-|
T Consensus        71 vpa~~v~~~l~e~~~~Gvk~avIis~Gf~e~~~~~l~~~a~~~girilG  119 (286)
T TIGR01019        71 VPAPFAADAIFEAIDAGIELIVCITEGIPVHDMLKVKRYMEESGTRLIG  119 (286)
T ss_pred             cCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEEC
Confidence            888888999999999997554 656799777668999999999887654

ATP citrate lyases appear to form an outgroup.

>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]

Probab=98.50  E-value=5.9e-07  Score=77.06  Aligned_cols=102  Identities=24%  Similarity=0.224  Sum_probs=69.8

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcC-CcEEEEEEec-C-----------C-CCcchh------hhccCCCCCCcceeCCH
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAIDS-H-----------S-VGEDIG------MVCDMEQPLEIPVMSDL   94 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~-~~eLvgvid~-~-----------~-~g~~~~------~l~g~~~~~gi~v~~~l   94 (163)
                      |+||+|.| .||+||.++|++.+.+ ++|++|+-|. +           . .|.=.+      ..+-+ ...+|+++.+.
T Consensus         1 ~ikV~ING-fGrIGR~v~ra~~~~~~dieVVaInd~t~~~~~A~LlkyDs~hg~f~~~v~~~~~~~~v-~g~~I~v~~~~   78 (335)
T COG0057           1 MIKVAING-FGRIGRLVARAALERDGDIEVVAINDLTDPDYLAHLLKYDSVHGRFDGEVEVKDDALVV-NGKGIKVLAER   78 (335)
T ss_pred             CcEEEEec-CcHHHHHHHHHHHhCCCCeEEEEEecCCCHHHHHHHHhhcccCCCCCCcccccCCeEEE-CCceEEEEecC
Confidence            68999999 7999999999999999 7999999992 1           0 111000      10111 13467777655


Q ss_pred             H-HHHhcccccCCccEEEEccCchhHHHHHHHHHHcC--CcEEEeCCCC
Q 031216           95 T-MVLGSISQSKARAVVIDFTDASTVYDNVKQATAFG--MRSVVYVPHI  140 (163)
Q Consensus        95 ~-ell~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G--~~vVigttg~  140 (163)
                      + +.+.-  .+..+|+|+|+|.--...+.+...+++|  +.|+++-|+-
T Consensus        79 ~p~~l~w--~d~gvdiVve~Tg~f~~~e~~~~hl~agGaKkV~isap~~  125 (335)
T COG0057          79 DPANLPW--ADLGVDIVVECTGKFTGREKAEKHLKAGGAKKVLISAPGK  125 (335)
T ss_pred             ChHHCCc--cccCccEEEECCCCccchhhHHHHHHhcCCCEEEEcCCCC
Confidence            5 44432  1346789999996666678888778786  7777776654

>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain

Probab=98.48  E-value=9.4e-07  Score=64.59  Aligned_cols=92  Identities=20%  Similarity=0.191  Sum_probs=59.9

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-CCCcchhhhccCCCCCCcceeCCHH-HHHhcccccCCccEEEEcc
Q 031216           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-SVGEDIGMVCDMEQPLEIPVMSDLT-MVLGSISQSKARAVVIDFT  114 (163)
Q Consensus        37 rV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~-~~g~~~~~l~g~~~~~gi~v~~~l~-ell~~~~~~~~~DVVIDfT  114 (163)
                      ||+++|++|++|+.+++.+.++++++++++++++ ..|+++....+   ...-.++.+++ +.++.    .+.|+|+.++
T Consensus         1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~----~~~DvV~~~~   73 (122)
T smart00859        1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGP---HLKGEVVLELEPEDFEE----LAVDIVFLAL   73 (122)
T ss_pred             CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCc---ccccccccccccCChhh----cCCCEEEEcC
Confidence            6899998899999999999999999999997743 34555443321   11001112222 11111    4899999666


Q ss_pred             CchhHHHH---HHHHHHcCCcEEE
Q 031216          115 DASTVYDN---VKQATAFGMRSVV  135 (163)
Q Consensus       115 ~p~~~~~~---~~~al~~G~~vVi  135 (163)
                      .++.+.+.   +..+++.|+.+|=
T Consensus        74 ~~~~~~~~~~~~~~~~~~g~~viD   97 (122)
T smart00859       74 PHGVSKEIAPLLPKAAEAGVKVID   97 (122)
T ss_pred             CcHHHHHHHHHHHhhhcCCCEEEE
Confidence            66666664   4555688988773

The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.

>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional

Probab=98.46  E-value=1.4e-06  Score=82.84  Aligned_cols=123  Identities=19%  Similarity=0.198  Sum_probs=80.1

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcC--------CcEEEEEEecC-----CCCcchhhhccCCCCCCcceeCCHHHHHhc
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKAR--------GMEVAGAIDSH-----SVGEDIGMVCDMEQPLEIPVMSDLTMVLGS  100 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~--------~~eLvgvid~~-----~~g~~~~~l~g~~~~~gi~v~~~l~ell~~  100 (163)
                      ++++|+++| .|.+|+.+++.+.+..        +++++++.++.     ..|-+...+.... . ...-..+.+.+++.
T Consensus       464 ~~~~i~l~G-~G~VG~~~~~~l~~~~~~l~~~~~~l~v~~i~~s~~~~~~~~g~~~~~~~~~~-~-~~~~~~~~~~~~~~  540 (819)
T PRK09436        464 QVLDVFVIG-VGGVGGALLEQIKRQQPWLKKKNIDLRVCGIANSRKMLLDEHGIDLDNWREEL-A-EAGEPFDLDRLIRL  540 (819)
T ss_pred             ccccEEEEe-cCHHHHHHHHHHHHHHHHHHhcCCcEEEEEEEcCCccccCCCCCCHHHHHHHH-h-hccCCCCHHHHHHH
Confidence            679999999 7999999999987543        67889988853     1233332221100 0 00000123332221


Q ss_pred             cc-ccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeCCCCC---HHHHHHHHHHhhhcCeEE
Q 031216          101 IS-QSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQ---LETVSALSAFCDKASMVS  159 (163)
Q Consensus       101 ~~-~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigttg~~---~e~~~~L~~~A~~~~Vv~  159 (163)
                      +. .+.+.||+||+|.-.....+...++++|+|||...-+.-   .++.++|.++|+++++-+
T Consensus       541 ~~~~~~~~~vvvd~t~~~~~~~~~~~al~~g~~VVtaNK~~~a~~~~~~~el~~~a~~~~~~~  603 (819)
T PRK09436        541 VKEYHLLNPVIVDCTSSQAVADQYADFLAAGFHVVTPNKKANTSSYAYYHQLREAARKSRRKF  603 (819)
T ss_pred             HhhcCCCCCEEEECCCChHHHHHHHHHHHcCCEEEcCCchhccCCHHHHHHHHHHHHHcCCeE
Confidence            11 112569999999766667777899999999998776532   268899999999986543

>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha

Probab=98.45  E-value=5.5e-06  Score=70.47  Aligned_cols=113  Identities=15%  Similarity=0.194  Sum_probs=87.6

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT  114 (163)
                      .-||.|.|.+|+.|..+.+..... +-++++.+.+..-+   .+      -.|++.|.+++++.+.    .++|+++.+.
T Consensus        12 ~~~v~~~gi~~~~~~~~~~~~~~y-gt~~~~gV~p~~~~---~~------i~G~~~y~sv~dlp~~----~~~DlAvI~v   77 (300)
T PLN00125         12 NTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGG---TE------HLGLPVFNTVAEAKAE----TKANASVIYV   77 (300)
T ss_pred             CCeEEEecCCCHHHHHHHHHHHHh-CCcEEEEECCCCCC---ce------EcCeeccCCHHHHhhc----cCCCEEEEec
Confidence            368999999999999999998876 89999999864211   12      2478899999999851    2389999788


Q ss_pred             CchhHHHHHHHHHHcCCc-EEEeCCCCCHHH-HHHHHHHhhhcCeEEcC
Q 031216          115 DASTVYDNVKQATAFGMR-SVVYVPHIQLET-VSALSAFCDKASMVSTG  161 (163)
Q Consensus       115 ~p~~~~~~~~~al~~G~~-vVigttg~~~e~-~~~L~~~A~~~~Vv~tg  161 (163)
                      .+..+.+.++.|.++|++ +|+-+.||.+.. .+.+.++|++.++-.-|
T Consensus        78 Pa~~v~~al~e~~~~Gvk~~vIisaGf~e~g~~~~~~~~ar~~girviG  126 (300)
T PLN00125         78 PPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNRQSKTRLIG  126 (300)
T ss_pred             CHHHHHHHHHHHHHcCCCEEEEECCCCCcccHHHHHHHHHhhcCCEEEC
Confidence            888889999999999988 556566886553 35566678988875443

>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form

Probab=98.45  E-value=2.4e-06  Score=73.01  Aligned_cols=75  Identities=15%  Similarity=0.129  Sum_probs=57.8

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEccC
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT~  115 (163)
                      -||+|+|++|++|.+++|.+..||++||+.+..+..       +.    +      .+.++++.      ++|+|+ |+.
T Consensus         2 ~~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~-------~~----~------~~~~~~~~------~~D~vF-lal   57 (310)
T TIGR01851         2 PKVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRR-------KD----A------AERAKLLN------AADVAI-LCL   57 (310)
T ss_pred             CeEEEECCCChhHHHHHHHHhCCCCeEEEEEecccc-------cC----c------CCHhHhhc------CCCEEE-ECC
Confidence            489999999999999999999999999999876532       00    0      13445543      799988 555


Q ss_pred             chh-HHHHHHHHHHcCCcEE
Q 031216          116 AST-VYDNVKQATAFGMRSV  134 (163)
Q Consensus       116 p~~-~~~~~~~al~~G~~vV  134 (163)
                      |+. ..+++..+.+.|+.||
T Consensus        58 p~~~s~~~~~~~~~~g~~VI   77 (310)
T TIGR01851        58 PDDAAREAVSLVDNPNTCII   77 (310)
T ss_pred             CHHHHHHHHHHHHhCCCEEE
Confidence            554 4788888888999776

This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.

>PLN02700 homoserine dehydrogenase family protein

Probab=98.44  E-value=1.5e-06  Score=75.96  Aligned_cols=124  Identities=19%  Similarity=0.297  Sum_probs=75.3

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcC--------CcEEEEEEecCC---------CCcchhhhcc---CC-CCCCccee--
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKAR--------GMEVAGAIDSHS---------VGEDIGMVCD---ME-QPLEIPVM--   91 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~--------~~eLvgvid~~~---------~g~~~~~l~g---~~-~~~gi~v~--   91 (163)
                      .++|+|+| .|.+|+.+++++.+..        ++.++|+.|++.         .|.+...+..   .. ......-+  
T Consensus         3 ~i~i~liG-~G~VG~~ll~ql~~~~~~~~~~gi~l~v~~ia~s~~~l~~~~~~~~Gldl~~~~~~~~~~~~~~~~~~~~~   81 (377)
T PLN02700          3 KIPVLLLG-CGGVGRHLLRHIVSCRSLHAKQGVRIRVVGVCDSKSLVLAEDVLNEELDDALLSEVCLAKSKGSPLSALGA   81 (377)
T ss_pred             EEEEEEEe-cChHHHHHHHHHHHHHHHHHhcCceEEEEEEECCCceEECCccccCCCCHHHHHHHHHhhccccchhhhhh
Confidence            48999999 6999999999977654        367889988531         1333322211   00 01111000  


Q ss_pred             -----------------CCHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhh
Q 031216           92 -----------------SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDK  154 (163)
Q Consensus        92 -----------------~~l~ell~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~  154 (163)
                                       .+..+.+..    ...+|+||+|......++...++++|+|||...-+.-....+++.++++.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ViVD~T~s~~~~~~y~~aL~~G~hVVTaNK~~~a~~~~~~~~la~~  157 (377)
T PLN02700         82 LAGGCQVFNNSELSRKVIDIATLLGK----STGLVVVDCSASMETIGALNEAVDLGCCIVLANKKPLTSTLEDYDKLAAH  157 (377)
T ss_pred             ccccccccccccccchhhhHHHHhhc----cCCCEEEECCCChHHHHHHHHHHHCCCeEEcCCchHhccCHHHHHHHHHc
Confidence                             112232321    35699999998777789999999999999987664333334445555543


Q ss_pred             -cCeEEcCCC
Q 031216          155 -ASMVSTGSV  163 (163)
Q Consensus       155 -~~Vv~tg~~  163 (163)
                       ..+.|.++|
T Consensus       158 ~~~~~yEatV  167 (377)
T PLN02700        158 PRRIRHESTV  167 (377)
T ss_pred             CCeEEEEeee
Confidence             445555543

>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional

Probab=98.40  E-value=2.4e-06  Score=81.13  Aligned_cols=127  Identities=14%  Similarity=0.119  Sum_probs=82.0

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcC---------CcEEEEEEecCC-----CCcchhhhccCCCCCCcceeCCHHHHHh
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKAR---------GMEVAGAIDSHS-----VGEDIGMVCDMEQPLEIPVMSDLTMVLG   99 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~---------~~eLvgvid~~~-----~g~~~~~l~g~~~~~gi~v~~~l~ell~   99 (163)
                      +.++|+++| .|.+|+.+++.+.++.         +++++++++++.     .|-+...+....  .......+++.+++
T Consensus       457 ~~i~i~l~G-~G~VG~~l~~~l~~~~~~l~~~~g~~~~v~~I~~s~~~~~~~~gi~~~~~~~~~--~~~~~~~~~~~~~e  533 (810)
T PRK09466        457 KRIGLVLFG-KGNIGSRWLELFAREQSTLSARTGFEFVLVGVVDSRRSLLNYDGLDASRALAFF--DDEAVEWDEESLFL  533 (810)
T ss_pred             ceEEEEEEe-cCCChHHHHHHHHHHHHHHHHhcCCCEEEEEEEeCCccccCccCCCHHHHHhhH--HhhcCCccHHHHHH
Confidence            569999999 7999999999987543         578899998531     232333322110  00111123332222


Q ss_pred             ccc-ccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeCCCC---CHHHHHHHHHHhhhcCeE--EcCCC
Q 031216          100 SIS-QSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHI---QLETVSALSAFCDKASMV--STGSV  163 (163)
Q Consensus       100 ~~~-~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigttg~---~~e~~~~L~~~A~~~~Vv--~tg~~  163 (163)
                      .+. .+...+|+||+|..+....+...++++|+|||...-.+   ..+..++|.++|+++++-  |.+||
T Consensus       534 ~i~~~~~~~~vvVd~t~~~~~~~~~~~aL~~G~~VVtaNK~~~a~~~~~~~~l~~~a~~~~~~~~yEasV  603 (810)
T PRK09466        534 WLRAHPYDELVVLDVTASEQLALQYPDFASHGFHVISANKLAGSSPSNFYRQIKDAFAKTGRHWLYNATV  603 (810)
T ss_pred             HHhhcCCCCcEEEECCCChHHHHHHHHHHHcCCEEEcCCcccccccHHHHHHHHHHHHHcCCeEEEecee
Confidence            111 01234699999977767777779999999999877643   347889999999997654  44443

>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A

Probab=98.39  E-value=3.3e-06  Score=62.14  Aligned_cols=103  Identities=19%  Similarity=0.270  Sum_probs=72.1

Q ss_pred             eEEEEcCC---CHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEc
Q 031216           37 KVIINGAV---KEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (163)
Q Consensus        37 rV~VvGa~---G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDf  113 (163)
                      +|+|+|++   ++.|..+++.+.+ .+.++..+ +++.     .+      -.|.+.|.++++ ..     .++|+++-+
T Consensus         2 siAVvGaS~~~~~~g~~v~~~l~~-~G~~v~~V-np~~-----~~------i~G~~~y~sl~e-~p-----~~iDlavv~   62 (116)
T PF13380_consen    2 SIAVVGASDNPGKFGYRVLRNLKA-AGYEVYPV-NPKG-----GE------ILGIKCYPSLAE-IP-----EPIDLAVVC   62 (116)
T ss_dssp             EEEEET--SSTTSHHHHHHHHHHH-TT-EEEEE-STTC-----SE------ETTEE-BSSGGG-CS-----ST-SEEEE-
T ss_pred             EEEEEcccCCCCChHHHHHHHHHh-CCCEEEEE-CCCc-----eE------ECcEEeeccccC-CC-----CCCCEEEEE
Confidence            69999987   8899999999987 78888754 3221     12      236788999998 44     499999989


Q ss_pred             cCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeEEcC
Q 031216          114 TDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVSTG  161 (163)
Q Consensus       114 T~p~~~~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv~tg  161 (163)
                      +.|+...+.++.+.+.|++-|+-.++   +..+++.++|++.++-+-|
T Consensus        63 ~~~~~~~~~v~~~~~~g~~~v~~~~g---~~~~~~~~~a~~~gi~vig  107 (116)
T PF13380_consen   63 VPPDKVPEIVDEAAALGVKAVWLQPG---AESEELIEAAREAGIRVIG  107 (116)
T ss_dssp             S-HHHHHHHHHHHHHHT-SEEEE-TT---S--HHHHHHHHHTT-EEEE
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEEEcc---hHHHHHHHHHHHcCCEEEe
Confidence            99999999999999999998887777   3456788888888876653

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=98.37  E-value=2.1e-06  Score=75.40  Aligned_cols=115  Identities=17%  Similarity=0.154  Sum_probs=78.8

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC-Ccchhhhcc--CC-CCCCcceeCCHHHHHhcccccCCccEE
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-GEDIGMVCD--ME-QPLEIPVMSDLTMVLGSISQSKARAVV  110 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~-g~~~~~l~g--~~-~~~gi~v~~~l~ell~~~~~~~~~DVV  110 (163)
                      |+||.|+|+ |++|+.++..+.++.+.++..+ |++.. -.++.+..+  ++ -..++.-.+.+.+++.      +.|+|
T Consensus         1 m~~ilviGa-G~Vg~~va~~la~~~d~~V~iA-dRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~------~~d~V   72 (389)
T COG1748           1 MMKILVIGA-GGVGSVVAHKLAQNGDGEVTIA-DRSKEKCARIAELIGGKVEALQVDAADVDALVALIK------DFDLV   72 (389)
T ss_pred             CCcEEEECC-chhHHHHHHHHHhCCCceEEEE-eCCHHHHHHHHhhccccceeEEecccChHHHHHHHh------cCCEE
Confidence            689999995 9999999999888887888854 44321 112222110  00 0112222245566775      66999


Q ss_pred             EEccCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeEE
Q 031216          111 IDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVS  159 (163)
Q Consensus       111 IDfT~p~~~~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv~  159 (163)
                      |++-.|.-....+++|+++|+++|- |+-..+. ..++.+.|+++|+..
T Consensus        73 In~~p~~~~~~i~ka~i~~gv~yvD-ts~~~~~-~~~~~~~a~~Agit~  119 (389)
T COG1748          73 INAAPPFVDLTILKACIKTGVDYVD-TSYYEEP-PWKLDEEAKKAGITA  119 (389)
T ss_pred             EEeCCchhhHHHHHHHHHhCCCEEE-cccCCch-hhhhhHHHHHcCeEE
Confidence            9999888889999999999999876 4433333 388999999998653

>PRK05472 redox-sensing transcriptional repressor Rex; Provisional

Probab=98.34  E-value=3.8e-06  Score=67.49  Aligned_cols=95  Identities=18%  Similarity=0.287  Sum_probs=64.9

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHH-HhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEE
Q 031216           34 SNIKVIINGAVKEIGRAAVIAV-TKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i-~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVID  112 (163)
                      ...||+|+| +|.+|+.+++.+ ....+++++|++|.+..  ..+...+   ...+..++++++++.+    .++|+++.
T Consensus        83 ~~~rV~IIG-aG~iG~~l~~~~~~~~~g~~ivgv~D~d~~--~~~~~i~---g~~v~~~~~l~~li~~----~~iD~ViI  152 (213)
T PRK05472         83 RTWNVALVG-AGNLGRALLNYNGFEKRGFKIVAAFDVDPE--KIGTKIG---GIPVYHIDELEEVVKE----NDIEIGIL  152 (213)
T ss_pred             CCcEEEEEC-CCHHHHHHHHhhhcccCCcEEEEEEECChh--hcCCEeC---CeEEcCHHHHHHHHHH----CCCCEEEE
Confidence            457999999 599999999864 24678999999996421  1111110   1112234677787763    67999996


Q ss_pred             ccCchhHHHHHHHHHHcCCcEE-EeCC
Q 031216          113 FTDASTVYDNVKQATAFGMRSV-VYVP  138 (163)
Q Consensus       113 fT~p~~~~~~~~~al~~G~~vV-igtt  138 (163)
                      ++++..+.+....++++|++.| ..+|
T Consensus       153 a~P~~~~~~i~~~l~~~Gi~~il~~~p  179 (213)
T PRK05472        153 TVPAEAAQEVADRLVEAGIKGILNFAP  179 (213)
T ss_pred             eCCchhHHHHHHHHHHcCCCEEeecCc
Confidence            7766667788899999996544 4454

>PRK07634 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.33  E-value=9.4e-06  Score=65.59  Aligned_cols=103  Identities=9%  Similarity=0.054  Sum_probs=66.5

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcC--CcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEE
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKAR--GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~--~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVID  112 (163)
                      ++||+|+| +|+||+.+++.+.+..  +.+-+.+.+++. .+....+..   .+++.++++++++++      ++|+||.
T Consensus         4 ~~kI~iIG-~G~mg~ala~~l~~~~~~~~~~i~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~------~~DiVii   72 (245)
T PRK07634          4 KHRILFIG-AGRMAEAIFSGLLKTSKEYIEEIIVSNRSN-VEKLDQLQA---RYNVSTTTDWKQHVT------SVDTIVL   72 (245)
T ss_pred             CCeEEEEC-cCHHHHHHHHHHHhCCCCCcCeEEEECCCC-HHHHHHHHH---HcCcEEeCChHHHHh------cCCEEEE
Confidence            47899999 6999999999987653  344232344321 112223321   346667889988875      8999998


Q ss_pred             ccCchhHHHHHHHHHH--cCCcEEEeCCCCCHHHHHHH
Q 031216          113 FTDASTVYDNVKQATA--FGMRSVVYVPHIQLETVSAL  148 (163)
Q Consensus       113 fT~p~~~~~~~~~al~--~G~~vVigttg~~~e~~~~L  148 (163)
                      ++.|..+.+.+.....  .+..+|.-..|++.++++.+
T Consensus        73 avp~~~~~~v~~~l~~~~~~~~vis~~~gi~~~~l~~~  110 (245)
T PRK07634         73 AMPPSAHEELLAELSPLLSNQLVVTVAAGIGPSYLEER  110 (245)
T ss_pred             ecCHHHHHHHHHHHHhhccCCEEEEECCCCCHHHHHHH
Confidence            8888777666654432  35555555558887765443

>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional

Probab=98.32  E-value=4.9e-06  Score=72.07  Aligned_cols=88  Identities=18%  Similarity=0.260  Sum_probs=62.8

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcE---EEEEEecCCCCcchhhhccCCCCCCccee-CCHHHHHhcccccCCccE
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGME---VAGAIDSHSVGEDIGMVCDMEQPLEIPVM-SDLTMVLGSISQSKARAV  109 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~e---Lvgvid~~~~g~~~~~l~g~~~~~gi~v~-~~l~ell~~~~~~~~~DV  109 (163)
                      +.+||+|+||+|..|+++++.+.++|+++   |..+...+..|+.+. +.+    ....+. -+.++ +.      ++|+
T Consensus         4 ~~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~-~~~----~~l~v~~~~~~~-~~------~~Di   71 (347)
T PRK06728          4 KGYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQ-FKG----REIIIQEAKINS-FE------GVDI   71 (347)
T ss_pred             CCCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCee-eCC----cceEEEeCCHHH-hc------CCCE
Confidence            34899999999999999999999899999   666655556666542 211    133332 13333 32      7999


Q ss_pred             EEEccCchhH-HHHHHHHHHcCCcEE
Q 031216          110 VIDFTDASTV-YDNVKQATAFGMRSV  134 (163)
Q Consensus       110 VIDfT~p~~~-~~~~~~al~~G~~vV  134 (163)
                      |+ |+.|... .+++..+.++|+.||
T Consensus        72 vf-~a~~~~~s~~~~~~~~~~G~~VI   96 (347)
T PRK06728         72 AF-FSAGGEVSRQFVNQAVSSGAIVI   96 (347)
T ss_pred             EE-ECCChHHHHHHHHHHHHCCCEEE
Confidence            88 6656554 788888999999887

>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms)

Probab=98.30  E-value=9.7e-06  Score=69.80  Aligned_cols=86  Identities=13%  Similarity=0.133  Sum_probs=61.0

Q ss_pred             eEEEEcCCCHHHHHHHHHHHh--cCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHH-HHHhcccccCCccEEEEc
Q 031216           37 KVIINGAVKEIGRAAVIAVTK--ARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLT-MVLGSISQSKARAVVIDF  113 (163)
Q Consensus        37 rV~VvGa~G~mG~~i~~~i~~--~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~-ell~~~~~~~~~DVVIDf  113 (163)
                      ||+|+||+|+.|+++++.+.+  +|.++|+.+...+..|+... +.+    ... ++.+++ +.+      .++|+|+.+
T Consensus         1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~-~~~----~~~-~~~~~~~~~~------~~~D~v~~a   68 (339)
T TIGR01296         1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVT-FKG----KEL-EVNEAKIESF------EGIDIALFS   68 (339)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeee-eCC----eeE-EEEeCChHHh------cCCCEEEEC
Confidence            689999999999999999988  79999987766555555443 111    112 233333 233      389999955


Q ss_pred             cCchhHHHHHHHHHHcCCcEE
Q 031216          114 TDASTVYDNVKQATAFGMRSV  134 (163)
Q Consensus       114 T~p~~~~~~~~~al~~G~~vV  134 (163)
                      +......+++..+++.|+.||
T Consensus        69 ~g~~~s~~~a~~~~~~G~~VI   89 (339)
T TIGR01296        69 AGGSVSKEFAPKAAKCGAIVI   89 (339)
T ss_pred             CCHHHHHHHHHHHHHCCCEEE
Confidence            655566889999999999765

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=98.28  E-value=5.6e-06  Score=71.50  Aligned_cols=110  Identities=17%  Similarity=0.184  Sum_probs=71.2

Q ss_pred             EEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccC-CCCCCcce----eCC---HHHHHhcccccCCccE
Q 031216           38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDM-EQPLEIPV----MSD---LTMVLGSISQSKARAV  109 (163)
Q Consensus        38 V~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~-~~~~gi~v----~~~---l~ell~~~~~~~~~DV  109 (163)
                      |+|+|+ |++|+.+++.+.++.+.+=+.+.|++.  .++..+... . ...+..    ..|   +++++.      +.|+
T Consensus         1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r~~--~~~~~~~~~~~-~~~~~~~~~d~~~~~~l~~~~~------~~dv   70 (386)
T PF03435_consen    1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADRNP--EKAERLAEKLL-GDRVEAVQVDVNDPESLAELLR------GCDV   70 (386)
T ss_dssp             EEEE---SHHHHHHHHHHHCTTCE-EEEEEESSH--HHHHHHHT--T-TTTEEEEE--TTTHHHHHHHHT------TSSE
T ss_pred             CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEECCH--HHHHHHHhhcc-ccceeEEEEecCCHHHHHHHHh------cCCE
Confidence            789997 999999999999998883344666542  122222210 0 111211    123   445553      7899


Q ss_pred             EEEccCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeEE
Q 031216          110 VIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVS  159 (163)
Q Consensus       110 VIDfT~p~~~~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv~  159 (163)
                      ||++..|......++.|+++|+|.|-  +.+-.+...++.+.|++.++..
T Consensus        71 Vin~~gp~~~~~v~~~~i~~g~~yvD--~~~~~~~~~~l~~~a~~~g~~~  118 (386)
T PF03435_consen   71 VINCAGPFFGEPVARACIEAGVHYVD--TSYVTEEMLALDEEAKEAGVTA  118 (386)
T ss_dssp             EEE-SSGGGHHHHHHHHHHHT-EEEE--SS-HHHHHHHCHHHHHHTTSEE
T ss_pred             EEECCccchhHHHHHHHHHhCCCeec--cchhHHHHHHHHHHHHhhCCEE
Confidence            99999888888999999999999887  4443456788888888877754

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>PLN02358 glyceraldehyde-3-phosphate dehydrogenase

Probab=98.25  E-value=5.1e-06  Score=71.74  Aligned_cols=96  Identities=20%  Similarity=0.180  Sum_probs=64.7

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC--------------CCCcchh-hh-------ccCCCCCCccee-
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH--------------SVGEDIG-MV-------CDMEQPLEIPVM-   91 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~--------------~~g~~~~-~l-------~g~~~~~gi~v~-   91 (163)
                      ++||||+| .|+||+.+++.+.+.++++|+++.|+.              ..|+-.+ ++       +-.. ...+.++ 
T Consensus         5 ~lrVaI~G-~GrIGr~~~r~~~~~~~velvaI~D~~~~~~~~a~ll~yDs~~g~~~~~~v~~~~g~~l~~~-g~~i~v~~   82 (338)
T PLN02358          5 KIRIGING-FGRIGRLVARVVLQRDDVELVAVNDPFITTEYMTYMFKYDSVHGQWKHHELKVKDDKTLLFG-EKPVTVFG   82 (338)
T ss_pred             ceEEEEEe-ecHHHHHHHHHHhhCCCcEEEEEeCCCCCHHHHHHhheeecCCCCcCCCeEEECCCCEEEEC-CEEEEEEE
Confidence            58999999 699999999999888999999999842              1122110 01       0000 1123333 


Q ss_pred             -CCHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCcEEE
Q 031216           92 -SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVV  135 (163)
Q Consensus        92 -~~l~ell~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVi  135 (163)
                       .+++++-..   +..+|+|+++|-.....+.+...+++|...|+
T Consensus        83 ~~~p~~~~w~---~~gvDiVie~tG~~~s~~~a~~hl~aGak~Vi  124 (338)
T PLN02358         83 IRNPEDIPWG---EAGADFVVESTGVFTDKDKAAAHLKGGAKKVV  124 (338)
T ss_pred             cCCcccCccc---ccCCCEEEEcccchhhHHHHHHHHHCCCEEEE
Confidence             334444221   24899999888888888999999999975554

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=98.24  E-value=1.3e-05  Score=55.77  Aligned_cols=87  Identities=15%  Similarity=0.097  Sum_probs=59.3

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcC--CcEEEEEEecCCCCcchhhhccCCCCCCcceeC-CHHHHHhcccccCCccEEEEc
Q 031216           37 KVIINGAVKEIGRAAVIAVTKAR--GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS-DLTMVLGSISQSKARAVVIDF  113 (163)
Q Consensus        37 rV~VvGa~G~mG~~i~~~i~~~~--~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~-~l~ell~~~~~~~~~DVVIDf  113 (163)
                      ||+++| +|+||..+++.+.+..  ..++.-+.+++.  +...++..   ..++.++. +..++++      +.|+||.+
T Consensus         1 kI~iIG-~G~mg~al~~~l~~~g~~~~~v~~~~~r~~--~~~~~~~~---~~~~~~~~~~~~~~~~------~advvila   68 (96)
T PF03807_consen    1 KIGIIG-AGNMGSALARGLLASGIKPHEVIIVSSRSP--EKAAELAK---EYGVQATADDNEEAAQ------EADVVILA   68 (96)
T ss_dssp             EEEEES-TSHHHHHHHHHHHHTTS-GGEEEEEEESSH--HHHHHHHH---HCTTEEESEEHHHHHH------HTSEEEE-
T ss_pred             CEEEEC-CCHHHHHHHHHHHHCCCCceeEEeeccCcH--HHHHHHHH---hhccccccCChHHhhc------cCCEEEEE
Confidence            799999 6999999999987542  277775556542  23333331   34555555 7888885      89999988


Q ss_pred             cCchhHHHHHHHH--HHcCCcEEE
Q 031216          114 TDASTVYDNVKQA--TAFGMRSVV  135 (163)
Q Consensus       114 T~p~~~~~~~~~a--l~~G~~vVi  135 (163)
                      ..|....+.+...  ...++-+|.
T Consensus        69 v~p~~~~~v~~~i~~~~~~~~vis   92 (96)
T PF03807_consen   69 VKPQQLPEVLSEIPHLLKGKLVIS   92 (96)
T ss_dssp             S-GGGHHHHHHHHHHHHTTSEEEE
T ss_pred             ECHHHHHHHHHHHhhccCCCEEEE
Confidence            8888877766554  677777765

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated

Probab=98.23  E-value=5.9e-06  Score=71.26  Aligned_cols=94  Identities=23%  Similarity=0.145  Sum_probs=66.7

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC--------------CCCcchhhh------ccCCCCCCccee--C
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH--------------SVGEDIGMV------CDMEQPLEIPVM--S   92 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~--------------~~g~~~~~l------~g~~~~~gi~v~--~   92 (163)
                      ++||+|.|+ |||||.+++.+.+.++++|+++.|..              ..|+-.+++      +-+. ...+.++  .
T Consensus         2 ~ikigInG~-GRiGr~v~r~~~~~~~~~ivaind~~~~~~~~a~ll~yDs~~g~~~~~v~~~g~~l~~~-g~~i~v~~~~   79 (334)
T PRK08955          2 TIKVGINGF-GRIGRLALRAAWDWPELEFVQINDPAGDAATLAHLLEFDSVHGRWHHEVTAEGDAIVIN-GKRIRTTQNK   79 (334)
T ss_pred             CeEEEEECc-CHHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHhhhhccCCCCCCCEEEcCCEEEEC-CEEEEEEecC
Confidence            489999996 99999999999989999999999831              112211111      1000 1223343  3


Q ss_pred             CHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCcEEE
Q 031216           93 DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVV  135 (163)
Q Consensus        93 ~l~ell~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVi  135 (163)
                      +++++-.     .++|+|+++|-.....+.+...++.|..+|+
T Consensus        80 ~~~~~~w-----~gvDiVle~tG~~~s~~~a~~hl~aGak~V~  117 (334)
T PRK08955         80 AIADTDW-----SGCDVVIEASGVMKTKALLQAYLDQGVKRVV  117 (334)
T ss_pred             ChhhCCc-----cCCCEEEEccchhhcHHHHHHHHHCCCEEEE
Confidence            6777665     3899999888788888999999999976665

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.22  E-value=1.7e-05  Score=65.09  Aligned_cols=102  Identities=10%  Similarity=0.033  Sum_probs=65.8

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcC-CcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEE
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~-~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVID  112 (163)
                      +|+||+|+| +|.||+.+++.+.+.. ...-+.+++++.  +....+..   .+++.+.++.++++.      ++|+||.
T Consensus         1 ~mm~I~iIG-~G~mG~~la~~l~~~g~~~~~v~v~~r~~--~~~~~~~~---~~g~~~~~~~~~~~~------~advVil   68 (267)
T PRK11880          1 MMKKIGFIG-GGNMASAIIGGLLASGVPAKDIIVSDPSP--EKRAALAE---EYGVRAATDNQEAAQ------EADVVVL   68 (267)
T ss_pred             CCCEEEEEe-chHHHHHHHHHHHhCCCCcceEEEEcCCH--HHHHHHHH---hcCCeecCChHHHHh------cCCEEEE
Confidence            378999999 6999999999987542 123345667542  12222221   235666778888764      8999997


Q ss_pred             ccCchhHHHHHHHHHHc-CCcEEEeCCCCCHHHHHH
Q 031216          113 FTDASTVYDNVKQATAF-GMRSVVYVPHIQLETVSA  147 (163)
Q Consensus       113 fT~p~~~~~~~~~al~~-G~~vVigttg~~~e~~~~  147 (163)
                      ++.|....+.+...... +..||.-+.|.+.++.+.
T Consensus        69 ~v~~~~~~~v~~~l~~~~~~~vvs~~~gi~~~~l~~  104 (267)
T PRK11880         69 AVKPQVMEEVLSELKGQLDKLVVSIAAGVTLARLER  104 (267)
T ss_pred             EcCHHHHHHHHHHHHhhcCCEEEEecCCCCHHHHHH
Confidence            88777776766655443 455555555787665443

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=98.20  E-value=1.8e-05  Score=65.96  Aligned_cols=106  Identities=16%  Similarity=0.153  Sum_probs=68.7

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT  114 (163)
                      ++||+|+| +|.||+.+++.+. ..+.++. ++|++.  .+...+.    ..++.+++++++++.      ++|+||.+.
T Consensus         2 ~~~IgviG-~G~mG~~~a~~l~-~~g~~v~-~~d~~~--~~~~~~~----~~g~~~~~~~~e~~~------~~d~vi~~v   66 (296)
T PRK11559          2 TMKVGFIG-LGIMGKPMSKNLL-KAGYSLV-VYDRNP--EAVAEVI----AAGAETASTAKAVAE------QCDVIITML   66 (296)
T ss_pred             CceEEEEc-cCHHHHHHHHHHH-HCCCeEE-EEcCCH--HHHHHHH----HCCCeecCCHHHHHh------cCCEEEEeC
Confidence            46899999 6999999999987 4688876 467542  2222222    335566788998875      899999666


Q ss_pred             CchhHHHHH-------HHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcC
Q 031216          115 DASTVYDNV-------KQATAFGMRSVVYVPHIQLETVSALSAFCDKAS  156 (163)
Q Consensus       115 ~p~~~~~~~-------~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~  156 (163)
                      ++....+.+       ...+..|.-+ +-++..++...++|.+..++.+
T Consensus        67 p~~~~~~~v~~~~~~~~~~~~~g~ii-id~st~~~~~~~~l~~~~~~~g  114 (296)
T PRK11559         67 PNSPHVKEVALGENGIIEGAKPGTVV-IDMSSIAPLASREIAAALKAKG  114 (296)
T ss_pred             CCHHHHHHHHcCcchHhhcCCCCcEE-EECCCCCHHHHHHHHHHHHHcC
Confidence            544443333       2233445544 4455566777777777766554

>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=98.13  E-value=1.8e-05  Score=69.15  Aligned_cols=85  Identities=14%  Similarity=0.077  Sum_probs=58.7

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcE---EEEEEecCCCCcchhhhccCCCCCCcceeC--CHHHHHhcccccCCccE
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGME---VAGAIDSHSVGEDIGMVCDMEQPLEIPVMS--DLTMVLGSISQSKARAV  109 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~e---Lvgvid~~~~g~~~~~l~g~~~~~gi~v~~--~l~ell~~~~~~~~~DV  109 (163)
                      |+||+|+||+|..|+++++.+.+++++.   ++...++ ..|.....+-+    ....+++  +.+. +.      ++|+
T Consensus         1 m~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~-~sg~~~~~f~g----~~~~v~~~~~~~~-~~------~~Di   68 (369)
T PRK06598          1 MKKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTS-QAGGAAPSFGG----KEGTLQDAFDIDA-LK------KLDI   68 (369)
T ss_pred             CeEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecch-hhCCcccccCC----CcceEEecCChhH-hc------CCCE
Confidence            6899999999999999999888899998   7774333 33333322222    1234443  2333 33      7999


Q ss_pred             EEEccCchhH-HHHHHHHHHcCCc
Q 031216          110 VIDFTDASTV-YDNVKQATAFGMR  132 (163)
Q Consensus       110 VIDfT~p~~~-~~~~~~al~~G~~  132 (163)
                      ++ |+.|... .+++..+.++|++
T Consensus        69 vf-~a~~~~~s~~~~~~~~~aG~~   91 (369)
T PRK06598         69 II-TCQGGDYTNEVYPKLRAAGWQ   91 (369)
T ss_pred             EE-ECCCHHHHHHHHHHHHhCCCC
Confidence            88 7666655 6788889999975

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=98.12  E-value=5.1e-05  Score=63.79  Aligned_cols=111  Identities=16%  Similarity=0.148  Sum_probs=70.3

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEccC
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT~  115 (163)
                      +||+++| .|+||+.+++.+.+ .+.+|+ ++|++.  .....+.    ..+...+++++++.+.   ...+|+||.+..
T Consensus         1 m~Ig~IG-lG~mG~~mA~~L~~-~g~~v~-v~dr~~--~~~~~~~----~~g~~~~~s~~~~~~~---~~~advVi~~vp   68 (299)
T PRK12490          1 MKLGLIG-LGKMGGNMAERLRE-DGHEVV-GYDVNQ--EAVDVAG----KLGITARHSLEELVSK---LEAPRTIWVMVP   68 (299)
T ss_pred             CEEEEEc-ccHHHHHHHHHHHh-CCCEEE-EEECCH--HHHHHHH----HCCCeecCCHHHHHHh---CCCCCEEEEEec
Confidence            3899999 79999999999874 678887 578642  1222222    3456677899998752   013799886665


Q ss_pred             chhH-HHHHHHH---HHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeEE
Q 031216          116 ASTV-YDNVKQA---TAFGMRSVVYVPHIQLETVSALSAFCDKASMVS  159 (163)
Q Consensus       116 p~~~-~~~~~~a---l~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv~  159 (163)
                      +... .+.+...   ++.| .+|+-++..++++..++.+..++.++-|
T Consensus        69 ~~~~~~~v~~~i~~~l~~g-~ivid~st~~~~~~~~~~~~~~~~g~~~  115 (299)
T PRK12490         69 AGEVTESVIKDLYPLLSPG-DIVVDGGNSRYKDDLRRAEELAERGIHY  115 (299)
T ss_pred             CchHHHHHHHHHhccCCCC-CEEEECCCCCchhHHHHHHHHHHcCCeE
Confidence            5423 3333332   3334 4666666555666677777776666543

>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional

Probab=98.11  E-value=1.8e-05  Score=69.46  Aligned_cols=118  Identities=14%  Similarity=0.081  Sum_probs=75.7

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcC-CcEEEEEEecCCCC---c----------------chhhhccCCCCCCccee---
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAIDSHSVG---E----------------DIGMVCDMEQPLEIPVM---   91 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~-~~eLvgvid~~~~g---~----------------~~~~l~g~~~~~gi~v~---   91 (163)
                      |.||+|+|++|.+|+.+++.+.++| .+++++++......   +                ...++-......++.++   
T Consensus         1 mk~VaILGsTGSIG~~tL~vi~~~p~~f~VvaLaa~~n~~~l~~q~~~f~p~~v~i~~~~~~~~l~~~l~~~~~~v~~G~   80 (385)
T PRK05447          1 MKRITILGSTGSIGTQTLDVIRRNPDRFRVVALSAGKNVELLAEQAREFRPKYVVVADEEAAKELKEALAAAGIEVLAGE   80 (385)
T ss_pred             CceEEEEcCChHHHHHHHHHHHhCccccEEEEEEcCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHhhccCCceEEECh
Confidence            5799999999999999999998776 79999998421100   0                00011000001123333   


Q ss_pred             CCHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcC
Q 031216           92 SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKAS  156 (163)
Q Consensus        92 ~~l~ell~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~  156 (163)
                      +.+.++++    ..++|+|+....=....+....|+++|++|.+..-..-......|.+++++.+
T Consensus        81 ~~~~~l~~----~~~vD~Vv~Ai~G~aGl~ptl~Ai~aGK~VaLANKEslV~aG~~i~~~a~~~g  141 (385)
T PRK05447         81 EGLCELAA----LPEADVVVAAIVGAAGLLPTLAAIRAGKRIALANKESLVCAGELVMDAAKKSG  141 (385)
T ss_pred             hHHHHHhc----CCCCCEEEEeCcCcccHHHHHHHHHCCCcEEEeCHHHHHhhHHHHHHHHHHcC
Confidence            23444444    36799999666555567778999999999998554433455567777777755

>PTZ00023 glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=98.09  E-value=1.7e-05  Score=68.53  Aligned_cols=98  Identities=20%  Similarity=0.188  Sum_probs=67.4

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC--------------CCCcchhhh------ccCCCCCCccee--C
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH--------------SVGEDIGMV------CDMEQPLEIPVM--S   92 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~--------------~~g~~~~~l------~g~~~~~gi~v~--~   92 (163)
                      ++||||.| .||+||.+.|.+.+.++++++++-|..              ..|+=-+++      +-+ ....|.++  .
T Consensus         2 ~~ki~ING-fGRIGr~v~r~~~~~~~~~vvaiNd~~~~~~~~ayll~yDS~hG~~~~~v~~~~~~l~i-~g~~i~~~~~~   79 (337)
T PTZ00023          2 VVKLGING-FGRIGRLVFRAALEREDVEVVAINDPFMTLDYMCYLLKYDSVHGSLPAEVSVTDGFLMI-GSKKVHVFFEK   79 (337)
T ss_pred             ceEEEEEC-cChHHHHHHHHHHhcCCeEEEEecCCCCChHHhhhhheeecCCCCCCCcEEecCCEEEE-CCeEEEEEeCC
Confidence            47999999 799999999998877899999987721              112100011      000 01234444  5


Q ss_pred             CHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeC
Q 031216           93 DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV  137 (163)
Q Consensus        93 ~l~ell~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigt  137 (163)
                      +++++-..   +.++|+|+++|-.....+.+...+++|...|+=+
T Consensus        80 dp~~lpW~---~~gvDiVle~tG~~~s~~~a~~~l~aGak~V~iS  121 (337)
T PTZ00023         80 DPAAIPWG---KNGVDVVCESTGVFLTKEKAQAHLKGGAKKVIMS  121 (337)
T ss_pred             ChhhCCcc---ccCCCEEEEecchhcCHHHHHHHhhCCCEEEEeC
Confidence            66666542   4689999988877778889999999997777534

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.08  E-value=2.3e-05  Score=66.42  Aligned_cols=109  Identities=12%  Similarity=0.147  Sum_probs=64.3

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC-Ccchhhh-------ccCCCCCCcceeCCHHHHHhcccccCC
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-GEDIGMV-------CDMEQPLEIPVMSDLTMVLGSISQSKA  106 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~-g~~~~~l-------~g~~~~~gi~v~~~l~ell~~~~~~~~  106 (163)
                      ++||+|+| .|.||..++..+.+ .+.++. +++++.. .+.+...       .+......+..++++++++.      .
T Consensus         4 ~m~I~iIG-~G~mG~~ia~~L~~-~G~~V~-~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~------~   74 (328)
T PRK14618          4 GMRVAVLG-AGAWGTALAVLAAS-KGVPVR-LWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALA------G   74 (328)
T ss_pred             CCeEEEEC-cCHHHHHHHHHHHH-CCCeEE-EEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHc------C
Confidence            46999999 59999999999874 577766 4554311 1111110       01100112445678888764      8


Q ss_pred             ccEEEEccCchhHHHHHHHHHHcCCcEEEeCCCCCHHH--HHHHHHHhh
Q 031216          107 RAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLET--VSALSAFCD  153 (163)
Q Consensus       107 ~DVVIDfT~p~~~~~~~~~al~~G~~vVigttg~~~e~--~~~L~~~A~  153 (163)
                      +|+||-+..+. ..+.+...++.+..+|.-++|+++++  ...+.+...
T Consensus        75 aD~Vi~~v~~~-~~~~v~~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~  122 (328)
T PRK14618         75 ADFAVVAVPSK-ALRETLAGLPRALGYVSCAKGLAPDGGRLSELARVLE  122 (328)
T ss_pred             CCEEEEECchH-HHHHHHHhcCcCCEEEEEeeccccCCCccchHHHHHH
Confidence            99998555444 44444455566777776677775443  344555443

>PRK06476 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.08  E-value=3.6e-05  Score=63.13  Aligned_cols=101  Identities=11%  Similarity=0.097  Sum_probs=66.0

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEE--EEEEecCCCCcchhhhccCCCCC-CcceeCCHHHHHhcccccCCccEEEE
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEV--AGAIDSHSVGEDIGMVCDMEQPL-EIPVMSDLTMVLGSISQSKARAVVID  112 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eL--vgvid~~~~g~~~~~l~g~~~~~-gi~v~~~l~ell~~~~~~~~~DVVID  112 (163)
                      +||+++| +|+||+.+++.+.+. +.++  +.+.+++.  ....++..   .. ++.++++.+++..      +.|+|+.
T Consensus         1 m~IgiIG-~G~mG~aia~~L~~~-g~~~~~i~v~~r~~--~~~~~l~~---~~~~~~~~~~~~~~~~------~aDvVil   67 (258)
T PRK06476          1 MKIGFIG-TGAITEAMVTGLLTS-PADVSEIIVSPRNA--QIAARLAE---RFPKVRIAKDNQAVVD------RSDVVFL   67 (258)
T ss_pred             CeEEEEC-cCHHHHHHHHHHHhC-CCChheEEEECCCH--HHHHHHHH---HcCCceEeCCHHHHHH------hCCEEEE
Confidence            4899999 699999999998754 4333  44555432  22223321   12 4567788888875      7899998


Q ss_pred             ccCchhHHHHHHHH-HHcCCcEEEeCCCCCHHHHHHHH
Q 031216          113 FTDASTVYDNVKQA-TAFGMRSVVYVPHIQLETVSALS  149 (163)
Q Consensus       113 fT~p~~~~~~~~~a-l~~G~~vVigttg~~~e~~~~L~  149 (163)
                      ++.|....+.+... +..|..+|.-..+.+.++++.+.
T Consensus        68 av~p~~~~~vl~~l~~~~~~~vis~~ag~~~~~l~~~~  105 (258)
T PRK06476         68 AVRPQIAEEVLRALRFRPGQTVISVIAATDRAALLEWI  105 (258)
T ss_pred             EeCHHHHHHHHHHhccCCCCEEEEECCCCCHHHHHHHh
Confidence            88877666665443 34566676655577777766554

>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=98.05  E-value=2.6e-05  Score=67.15  Aligned_cols=95  Identities=16%  Similarity=0.123  Sum_probs=67.4

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHh-cCCcEEEEEEec-CCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEE
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTK-ARGMEVAGAIDS-HSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~-~~~~eLvgvid~-~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVID  112 (163)
                      |+||||+|++|..|+.+++.+.+ ++.++.+.++.+ +..|++..++.+    ..+.+-++..+...-    +++|+++ 
T Consensus         1 ~~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~~~~f~~----~~~~v~~~~~~~~~~----~~~Divf-   71 (334)
T COG0136           1 KLNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKYIEFGG----KSIGVPEDAADEFVF----SDVDIVF-   71 (334)
T ss_pred             CcEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCCccccccC----ccccCcccccccccc----ccCCEEE-
Confidence            58999999999999999999998 888986666664 456766455432    223333332222221    4799988 


Q ss_pred             ccCchh-HHHHHHHHHHcCCcEEEeCC
Q 031216          113 FTDAST-VYDNVKQATAFGMRSVVYVP  138 (163)
Q Consensus       113 fT~p~~-~~~~~~~al~~G~~vVigtt  138 (163)
                      |+.+.. ..++...+.++|+.||--+.
T Consensus        72 ~~ag~~~s~~~~p~~~~~G~~VIdnsS   98 (334)
T COG0136          72 FAAGGSVSKEVEPKAAEAGCVVIDNSS   98 (334)
T ss_pred             EeCchHHHHHHHHHHHHcCCEEEeCCc
Confidence            777654 47899999999988875444

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=98.05  E-value=8.4e-05  Score=62.46  Aligned_cols=111  Identities=13%  Similarity=0.087  Sum_probs=69.5

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEccC
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT~  115 (163)
                      +||+++| +|.||+.+++.+.+ .+.++. +.|++.  .....+.    ..++.++++++++.+.   ...+|+||-+..
T Consensus         1 m~Ig~IG-lG~MG~~mA~~L~~-~g~~v~-v~dr~~--~~~~~~~----~~g~~~~~~~~e~~~~---~~~~dvvi~~v~   68 (301)
T PRK09599          1 MQLGMIG-LGRMGGNMARRLLR-GGHEVV-GYDRNP--EAVEALA----EEGATGADSLEELVAK---LPAPRVVWLMVP   68 (301)
T ss_pred             CEEEEEc-ccHHHHHHHHHHHH-CCCeEE-EEECCH--HHHHHHH----HCCCeecCCHHHHHhh---cCCCCEEEEEec
Confidence            4899999 79999999999874 678876 467542  1222322    3466778899988752   014788885554


Q ss_pred             ch-hHHHHH---HHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeEE
Q 031216          116 AS-TVYDNV---KQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVS  159 (163)
Q Consensus       116 p~-~~~~~~---~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv~  159 (163)
                      +. ...+.+   ...+..|. +|+-.+..+++...++.+.+++.++.|
T Consensus        69 ~~~~~~~v~~~l~~~l~~g~-ivid~st~~~~~~~~~~~~~~~~g~~~  115 (301)
T PRK09599         69 AGEITDATIDELAPLLSPGD-IVIDGGNSYYKDDIRRAELLAEKGIHF  115 (301)
T ss_pred             CCcHHHHHHHHHHhhCCCCC-EEEeCCCCChhHHHHHHHHHHHcCCEE
Confidence            43 223333   33344454 444444444556677777777777765

>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase

Probab=98.03  E-value=2.2e-05  Score=67.44  Aligned_cols=97  Identities=22%  Similarity=0.208  Sum_probs=64.1

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhc---CCcEEEEEEecCCC-------------Ccc------hhhhccCCCCCCccee--C
Q 031216           37 KVIINGAVKEIGRAAVIAVTKA---RGMEVAGAIDSHSV-------------GED------IGMVCDMEQPLEIPVM--S   92 (163)
Q Consensus        37 rV~VvGa~G~mG~~i~~~i~~~---~~~eLvgvid~~~~-------------g~~------~~~l~g~~~~~gi~v~--~   92 (163)
                      ||||+|+ |++||.++|.+.+.   ++++++++.|....             |+=      .+..+-+. ...+.++  .
T Consensus         1 ~IaInGf-GrIGR~vlr~l~e~~~~~~~~vvaInd~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~-g~~i~v~~~~   78 (325)
T TIGR01532         1 RVAINGF-GRIGRNVLRALYESGERLGIEVVALNELADQASMAHLLRYDTSHGRFPGEVKVDGDCLHVN-GDCIRVLHSP   78 (325)
T ss_pred             CEEEECC-CHHHHHHHHHHHhcCCCCCeEEEEEecCCCHHHHHHHHhhCccCCCCCCcEEEeCCEEEEC-CeEEEEEEcC
Confidence            6999996 99999999998865   46999999883210             100      00000000 1123443  3


Q ss_pred             CHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcC-CcEEEeCC
Q 031216           93 DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFG-MRSVVYVP  138 (163)
Q Consensus        93 ~l~ell~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G-~~vVigtt  138 (163)
                      +++++...   +..+|+|+++|-+....+.+..++++| +.|++..|
T Consensus        79 ~p~~~~w~---~~gvDiVie~tG~~~s~e~a~~~l~aGa~~V~~SaP  122 (325)
T TIGR01532        79 TPEALPWR---ALGVDLVLDCTGVYGNREQGERHIRAGAKRVLFSHP  122 (325)
T ss_pred             Chhhcccc---ccCCCEEEEccchhccHHHHHHHHHcCCeEEEecCC
Confidence            66665432   258999998888888899999999999 55555544

Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.

>PLN02688 pyrroline-5-carboxylate reductase

Probab=98.01  E-value=6.9e-05  Score=61.40  Aligned_cols=99  Identities=17%  Similarity=0.170  Sum_probs=64.2

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCc----EEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEE
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGM----EVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI  111 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~----eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVI  111 (163)
                      +||+++| +|.||..+++.+.+. +.    ++....+++.  .....+.    ..|+.+.++.+++..      +.|+||
T Consensus         1 ~kI~~IG-~G~mG~a~a~~L~~~-g~~~~~~i~v~~~r~~--~~~~~~~----~~g~~~~~~~~e~~~------~aDvVi   66 (266)
T PLN02688          1 FRVGFIG-AGKMAEAIARGLVAS-GVVPPSRISTADDSNP--ARRDVFQ----SLGVKTAASNTEVVK------SSDVII   66 (266)
T ss_pred             CeEEEEC-CcHHHHHHHHHHHHC-CCCCcceEEEEeCCCH--HHHHHHH----HcCCEEeCChHHHHh------cCCEEE
Confidence            5899999 799999999998754 44    6553325432  1222222    356777788888764      889999


Q ss_pred             EccCchhHHHHHHHH---HHcCCcEEEeCCCCCHHHHHHH
Q 031216          112 DFTDASTVYDNVKQA---TAFGMRSVVYVPHIQLETVSAL  148 (163)
Q Consensus       112 DfT~p~~~~~~~~~a---l~~G~~vVigttg~~~e~~~~L  148 (163)
                      .+..|....+.+...   +..+..+|.-+.+.+.++..++
T Consensus        67 l~v~~~~~~~vl~~l~~~~~~~~~iIs~~~g~~~~~l~~~  106 (266)
T PLN02688         67 LAVKPQVVKDVLTELRPLLSKDKLLVSVAAGITLADLQEW  106 (266)
T ss_pred             EEECcHHHHHHHHHHHhhcCCCCEEEEecCCCcHHHHHHH
Confidence            888777666665443   3345555544457776665543

>TIGR03450 mycothiol_INO1 inositol 1-phosphate synthase, Actinobacterial type

Probab=98.00  E-value=9e-05  Score=64.02  Aligned_cols=119  Identities=19%  Similarity=0.192  Sum_probs=82.8

Q ss_pred             eeEEEEcCCCHHHHHHHHHHH---hc-------------------CCcEEEEEEec--CCCCcchhhhccCCCCC-----
Q 031216           36 IKVIINGAVKEIGRAAVIAVT---KA-------------------RGMEVAGAIDS--HSVGEDIGMVCDMEQPL-----   86 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~---~~-------------------~~~eLvgvid~--~~~g~~~~~l~g~~~~~-----   86 (163)
                      +||+|+| -|+-.+.+++-+.   +.                   .|+|+|+++|.  +.+|+|+.+..-.. +.     
T Consensus         1 irvai~G-vGncaSslvqGieyyk~~~~~~~~~Glm~~~~g~y~~~DIe~vaafDVd~~KVGkdlseai~~~-pN~t~~~   78 (351)
T TIGR03450         1 VRVAIVG-VGNCASSLVQGVEYYYNADPTSTVPGLMHVQFGPYHVGDVEFVAAFDVDAKKVGFDLSDAIFAS-ENNTIKI   78 (351)
T ss_pred             CeEEEEe-ccHHHHHHHHHHHHHHhCCCccCcCCccccccCCcCccceEEEEEEeccccccCccHHHHHhcC-CCCceee
Confidence            6999999 5999999888653   11                   16799999994  56788877654221 22     


Q ss_pred             ------Ccce-----eC------------------CHHHHHhcccccCCccEEEEccC---chhHHHHHHHHHHcCCcEE
Q 031216           87 ------EIPV-----MS------------------DLTMVLGSISQSKARAVVIDFTD---ASTVYDNVKQATAFGMRSV  134 (163)
Q Consensus        87 ------gi~v-----~~------------------~l~ell~~~~~~~~~DVVIDfT~---p~~~~~~~~~al~~G~~vV  134 (163)
                            ++.|     .+                  |+-+.+.    +.++||+|.+-+   -.+..-|+.+|++.|++.|
T Consensus        79 ~~vp~~~v~V~~G~~lDg~~~~~~~~~~~~~~~~~dv~~~lk----~~~~dVlvnylPvGs~~A~~~YA~AAl~aG~afV  154 (351)
T TIGR03450        79 ADVPPTGVTVQRGPTLDGLGKYYRDTIEESDAEPVDVVQALK----DAKVDVLVSYLPVGSEEADKFYAQCAIDAGVAFV  154 (351)
T ss_pred             eccCCCCCEEeecccccchhhHhhccccccccCHHHHHHHHH----hcCCCEEEECCccchHHHHHHHHHHHHHcCCceE
Confidence                  2221     12                  2333344    479999997642   2344678899999999999


Q ss_pred             EeCCCCCHHHHHHHHHHhhhcCeEEcC
Q 031216          135 VYVPHIQLETVSALSAFCDKASMVSTG  161 (163)
Q Consensus       135 igttg~~~e~~~~L~~~A~~~~Vv~tg  161 (163)
                      -++|.+... ..++.+.+++.++.+.|
T Consensus       155 N~~P~~ia~-~p~~a~~f~e~glPi~G  180 (351)
T TIGR03450       155 NALPVFIAS-DPEWAKKFTDAGVPIVG  180 (351)
T ss_pred             eccCccccC-CHHHHHHHHHCCCCEec
Confidence            999976543 46788888888887766

This enzyme, inositol 1-phosphate synthase as found in Actinobacteria, produces an essential precursor for several different products, including mycothiol, which is a glutathione analog, and phosphatidylinositol, which is a phospholipid.

>PRK06928 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.00  E-value=0.0001  Score=61.50  Aligned_cols=110  Identities=9%  Similarity=0.043  Sum_probs=69.6

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCC---cEEEEEEecCCCCcchhhhccCCCCC-CcceeCCHHHHHhcccccCCccEE
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARG---MEVAGAIDSHSVGEDIGMVCDMEQPL-EIPVMSDLTMVLGSISQSKARAVV  110 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~---~eLvgvid~~~~g~~~~~l~g~~~~~-gi~v~~~l~ell~~~~~~~~~DVV  110 (163)
                      |.||+++| +|.||..+++.+.+...   .++.+...+..  .....+..   .. ++.++.+.++++.      ++|+|
T Consensus         1 m~~I~iIG-~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~--~~~~~l~~---~~~~~~~~~~~~e~~~------~aDvV   68 (277)
T PRK06928          1 MEKIGFIG-YGSMADMIATKLLETEVATPEEIILYSSSKN--EHFNQLYD---KYPTVELADNEAEIFT------KCDHS   68 (277)
T ss_pred             CCEEEEEC-ccHHHHHHHHHHHHCCCCCcccEEEEeCCcH--HHHHHHHH---HcCCeEEeCCHHHHHh------hCCEE
Confidence            57899999 69999999999876532   46664433221  11122211   12 3445678777764      89999


Q ss_pred             EEccCchhHHHHHHHH---HHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeEE
Q 031216          111 IDFTDASTVYDNVKQA---TAFGMRSVVYVPHIQLETVSALSAFCDKASMVS  159 (163)
Q Consensus       111 IDfT~p~~~~~~~~~a---l~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv~  159 (163)
                      |.++.|..+.+.+...   +..++.+|+-..|.+.++++++   ....+|+.
T Consensus        69 ilavpp~~~~~vl~~l~~~l~~~~~ivS~~aGi~~~~l~~~---~~~~~vvR  117 (277)
T PRK06928         69 FICVPPLAVLPLLKDCAPVLTPDRHVVSIAAGVSLDDLLEI---TPGLQVSR  117 (277)
T ss_pred             EEecCHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHH---cCCCCEEE
Confidence            9777777776666544   4567778876668887765553   33335554

>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain

Probab=97.99  E-value=9.6e-05  Score=65.78  Aligned_cols=108  Identities=17%  Similarity=0.211  Sum_probs=80.7

Q ss_pred             CeeEEEEcCC---CHHHHHHHHHHHhcCCc--EEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccE
Q 031216           35 NIKVIINGAV---KEIGRAAVIAVTKARGM--EVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV  109 (163)
Q Consensus        35 ~irV~VvGa~---G~mG~~i~~~i~~~~~~--eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DV  109 (163)
                      +-+|+|+|++   |++|..+++.+.+ .++  ++. .+.+..     .+      -.|+++|.+++++-      ..+|+
T Consensus         7 p~siavvGaS~~~~~~g~~~~~~l~~-~gf~g~v~-~Vnp~~-----~~------i~G~~~~~sl~~lp------~~~Dl   67 (447)
T TIGR02717         7 PKSVAVIGASRDPGKVGYAIMKNLIE-GGYKGKIY-PVNPKA-----GE------ILGVKAYPSVLEIP------DPVDL   67 (447)
T ss_pred             CCEEEEEccCCCCCchHHHHHHHHHh-CCCCCcEE-EECCCC-----Cc------cCCccccCCHHHCC------CCCCE
Confidence            4679999987   7899999999874 444  443 333321     12      24688999999985      48999


Q ss_pred             EEEccCchhHHHHHHHHHHcCCcEE-EeCCCCCH------HHHHHHHHHhhhcCeEEcC
Q 031216          110 VIDFTDASTVYDNVKQATAFGMRSV-VYVPHIQL------ETVSALSAFCDKASMVSTG  161 (163)
Q Consensus       110 VIDfT~p~~~~~~~~~al~~G~~vV-igttg~~~------e~~~~L~~~A~~~~Vv~tg  161 (163)
                      ++.++.|+.+.+.++.|.+.|++.+ +-+.||.+      +..++|.++|++.++-.-|
T Consensus        68 avi~vp~~~~~~~l~e~~~~gv~~~vi~s~gf~e~g~~g~~~~~~l~~~a~~~girvlG  126 (447)
T TIGR02717        68 AVIVVPAKYVPQVVEECGEKGVKGAVVITAGFKEVGEEGAELEQELVEIARKYGMRLLG  126 (447)
T ss_pred             EEEecCHHHHHHHHHHHHhcCCCEEEEECCCccccCcchHHHHHHHHHHHHHcCCEEEe
Confidence            9988889999999999999997755 54556643      2347899999998887654

Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.

>COG2344 AT-rich DNA-binding protein [General function prediction only]

Probab=97.95  E-value=2.5e-05  Score=62.67  Aligned_cols=103  Identities=24%  Similarity=0.310  Sum_probs=72.5

Q ss_pred             ccccceeeeccCCCCCCCeeEEEEcCCCHHHHHHHHHHH-hcCCcEEEEEEecC--CCCcchhhhccCCCCCCccee--C
Q 031216           18 NVKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVT-KARGMEVAGAIDSH--SVGEDIGMVCDMEQPLEIPVM--S   92 (163)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~irV~VvGa~G~mG~~i~~~i~-~~~~~eLvgvid~~--~~g~~~~~l~g~~~~~gi~v~--~   92 (163)
                      ||+--|=.|..+-.-.++.+++++|+ |++|++++..-- +..++++++++|..  ..|..         -.+++|+  +
T Consensus        67 nV~~L~~ff~~~Lg~~~~tnviiVG~-GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~---------~~~v~V~~~d  136 (211)
T COG2344          67 NVKYLRDFFDDLLGQDKTTNVIIVGV-GNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTK---------IGDVPVYDLD  136 (211)
T ss_pred             cHHHHHHHHHHHhCCCcceeEEEEcc-ChHHHHHhcCcchhhcCceEEEEecCCHHHhCcc---------cCCeeeechH
Confidence            34333323334444557899999995 999999998743 47899999999953  23322         2246776  6


Q ss_pred             CHHHHHhcccccCCccEEEEccCchhHH-HHHHHHHHcCCcEEE
Q 031216           93 DLTMVLGSISQSKARAVVIDFTDASTVY-DNVKQATAFGMRSVV  135 (163)
Q Consensus        93 ~l~ell~~~~~~~~~DVVIDfT~p~~~~-~~~~~al~~G~~vVi  135 (163)
                      ++++.+.+    .++|+.| .|.|..++ +.+....++|+.-|.
T Consensus       137 ~le~~v~~----~dv~iai-LtVPa~~AQ~vad~Lv~aGVkGIl  175 (211)
T COG2344         137 DLEKFVKK----NDVEIAI-LTVPAEHAQEVADRLVKAGVKGIL  175 (211)
T ss_pred             HHHHHHHh----cCccEEE-EEccHHHHHHHHHHHHHcCCceEE
Confidence            78887764    6888888 66676665 677899999987664

>PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated

Probab=97.93  E-value=5.1e-05  Score=65.70  Aligned_cols=98  Identities=21%  Similarity=0.216  Sum_probs=67.1

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-------------CCCcchhhh------ccCCCCCCccee--CC
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-------------SVGEDIGMV------CDMEQPLEIPVM--SD   93 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~-------------~~g~~~~~l------~g~~~~~gi~v~--~~   93 (163)
                      ++||||.| .||+||.+.|.+.+.+++|++++-|..             ..|+=.+++      +-+. ...+.++  .+
T Consensus         2 ~~ki~ING-fGRIGR~~~r~~~~~~~~~vvaINd~~~~~~~ayll~yDS~hG~~~~~v~~~~~~l~v~-g~~I~v~~~~d   79 (343)
T PRK07729          2 KTKVAING-FGRIGRMVFRKAIKESAFEIVAINASYPSETLAHLIKYDTVHGKFDGTVEAFEDHLLVD-GKKIRLLNNRD   79 (343)
T ss_pred             ceEEEEEC-cChHHHHHHHHHhhcCCcEEEEecCCCCHHHHHHHhhhccCCCCCCCcEEecCCEEEEC-CEEEEEEEcCC
Confidence            47999999 699999999998878899999997731             112110111      0000 1224444  46


Q ss_pred             HHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeC
Q 031216           94 LTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV  137 (163)
Q Consensus        94 l~ell~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigt  137 (163)
                      ++++-..   +.++|+|+++|-.....+.+...++.|..+|+=+
T Consensus        80 p~~~~W~---~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iS  120 (343)
T PRK07729         80 PKELPWT---DLGIDIVIEATGKFNSKEKAILHVEAGAKKVILT  120 (343)
T ss_pred             hhhCccc---ccCCCEEEEccchhhhHhHHHHHHHcCCeEEEeC
Confidence            6666542   2489999988888888899999999997777534

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=97.93  E-value=1.2e-05  Score=60.43  Aligned_cols=96  Identities=21%  Similarity=0.208  Sum_probs=54.6

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCC-cchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEE
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG-EDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g-~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVID  112 (163)
                      ..+||+|+|+ ||+|+.+.+.+. ..+.+++++..++... +++..+.+     ..+ +.++++++.      +.|+++ 
T Consensus         9 ~~l~I~iIGa-GrVG~~La~aL~-~ag~~v~~v~srs~~sa~~a~~~~~-----~~~-~~~~~~~~~------~aDlv~-   73 (127)
T PF10727_consen    9 ARLKIGIIGA-GRVGTALARALA-RAGHEVVGVYSRSPASAERAAAFIG-----AGA-ILDLEEILR------DADLVF-   73 (127)
T ss_dssp             ---EEEEECT-SCCCCHHHHHHH-HTTSEEEEESSCHH-HHHHHHC--T-----T------TTGGGC------C-SEEE-
T ss_pred             CccEEEEECC-CHHHHHHHHHHH-HCCCeEEEEEeCCcccccccccccc-----ccc-ccccccccc------cCCEEE-
Confidence            4699999995 999999999987 6789999988754211 22222221     222 346777664      899988 


Q ss_pred             ccCchhHHHHHHHHHHcC-----CcEEEeCCCC-CHHH
Q 031216          113 FTDASTVYDNVKQATAFG-----MRSVVYVPHI-QLET  144 (163)
Q Consensus       113 fT~p~~~~~~~~~al~~G-----~~vVigttg~-~~e~  144 (163)
                      .|.|+...+.+...+...     =.+|+.|.|. +.+-
T Consensus        74 iavpDdaI~~va~~La~~~~~~~g~iVvHtSGa~~~~v  111 (127)
T PF10727_consen   74 IAVPDDAIAEVAEQLAQYGAWRPGQIVVHTSGALGSDV  111 (127)
T ss_dssp             E-S-CCHHHHHHHHHHCC--S-TT-EEEES-SS--GGG
T ss_pred             EEechHHHHHHHHHHHHhccCCCCcEEEECCCCChHHh
Confidence            777888765444444332     3588888864 4443

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>PRK07679 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.93  E-value=0.0002  Score=59.44  Aligned_cols=111  Identities=7%  Similarity=0.104  Sum_probs=69.1

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcC---CcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEE
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKAR---GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~---~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVID  112 (163)
                      +||+++| +|.||..+++.+.+..   ..++. +++++. ......+..   .+++.++++..++..      +.|+||-
T Consensus         4 mkI~~IG-~G~mG~aia~~l~~~g~~~~~~v~-v~~r~~-~~~~~~l~~---~~g~~~~~~~~e~~~------~aDvVil   71 (279)
T PRK07679          4 QNISFLG-AGSIAEAIIGGLLHANVVKGEQIT-VSNRSN-ETRLQELHQ---KYGVKGTHNKKELLT------DANILFL   71 (279)
T ss_pred             CEEEEEC-ccHHHHHHHHHHHHCCCCCcceEE-EECCCC-HHHHHHHHH---hcCceEeCCHHHHHh------cCCEEEE
Confidence            5899999 6999999999988653   14444 456532 112223221   346667788888764      7899997


Q ss_pred             ccCchhHHHHHHHHH---HcCCcEEEeCCCCCHHHHHHHHHHhhhcCeEEc
Q 031216          113 FTDASTVYDNVKQAT---AFGMRSVVYVPHIQLETVSALSAFCDKASMVST  160 (163)
Q Consensus       113 fT~p~~~~~~~~~al---~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv~t  160 (163)
                      +..|....+.+....   ..+.-+|.-..|.+.++..++..  ...+|+.+
T Consensus        72 av~p~~~~~vl~~l~~~~~~~~liIs~~aGi~~~~l~~~~~--~~~~v~r~  120 (279)
T PRK07679         72 AMKPKDVAEALIPFKEYIHNNQLIISLLAGVSTHSIRNLLQ--KDVPIIRA  120 (279)
T ss_pred             EeCHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcC--CCCeEEEE
Confidence            777777666554433   33444554446888777655431  23466654

>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional

Probab=97.93  E-value=4.3e-05  Score=67.27  Aligned_cols=99  Identities=20%  Similarity=0.192  Sum_probs=65.5

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhc--CCcEEEEEEecC-------------CCCc---c----hhhhccCCCCCCccee
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDSH-------------SVGE---D----IGMVCDMEQPLEIPVM   91 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~--~~~eLvgvid~~-------------~~g~---~----~~~l~g~~~~~gi~v~   91 (163)
                      +++||+|+|+ |++||.++|.+.+.  +.++|+++=|..             ..|+   +    .++.+-+. ...+.++
T Consensus        59 ~~~kVaInGf-GrIGR~vlr~l~~~~~~~~evvaINd~~~~~~~ayLl~yDS~hG~f~~~v~~~~g~~l~v~-gk~I~v~  136 (395)
T PLN03096         59 AKIKVAINGF-GRIGRNFLRCWHGRKDSPLDVVAINDTGGVKQASHLLKYDSTLGTFDADVKPVGDDAISVD-GKVIKVV  136 (395)
T ss_pred             cccEEEEECc-CHHHHHHHHHHHhCCCCCeEEEEEcCCCCHHHHHHHHhhcccCCCcCCcEEEecCCEEEEC-CEEEEEE
Confidence            4489999996 99999999998766  789999876521             0010   0    01111111 1234444


Q ss_pred             --CCHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeC
Q 031216           92 --SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV  137 (163)
Q Consensus        92 --~~l~ell~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigt  137 (163)
                        .|++++-..   +..+|+|+++|-.....+.+...++.|...|+=+
T Consensus       137 ~~~dp~~~~w~---~~gvDiVie~TG~f~s~~~a~~hl~aGAkkV~iS  181 (395)
T PLN03096        137 SDRNPLNLPWG---ELGIDLVIEGTGVFVDREGAGKHIQAGAKKVLIT  181 (395)
T ss_pred             EcCCccccccc---ccCCCEEEECcchhhhHHHHHHHHHCCCEEEEeC
Confidence              346665442   2489999999988888888999999997766534

>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1

Probab=97.92  E-value=6e-05  Score=61.57  Aligned_cols=114  Identities=16%  Similarity=0.173  Sum_probs=76.2

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec-----CCCCcchhhhccCCCCCC-cc-----eeCCHHHHHhccc
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-----HSVGEDIGMVCDMEQPLE-IP-----VMSDLTMVLGSIS  102 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~-----~~~g~~~~~l~g~~~~~g-i~-----v~~~l~ell~~~~  102 (163)
                      +.+||+|.| .|.+|+.+++.+. ..+++++++.|+     .+.|-|..++.......+ +.     .+-+.++++.   
T Consensus        30 ~~~~v~I~G-~G~VG~~~a~~L~-~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~~~~~~i~~---  104 (227)
T cd01076          30 AGARVAIQG-FGNVGSHAARFLH-EAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERITNEELLE---  104 (227)
T ss_pred             cCCEEEEEC-CCHHHHHHHHHHH-HCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCceecCCcccee---
Confidence            568999999 7999999999987 469999999995     245666666543211111 11     1224566665   


Q ss_pred             ccCCccEEEEccCchhH-HHHHHHHHHcCCcEEEeCC--CCCHHHHHHHHHHhhhcCeEEcC
Q 031216          103 QSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMVSTG  161 (163)
Q Consensus       103 ~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigtt--g~~~e~~~~L~~~A~~~~Vv~tg  161 (163)
                        .++||+|.++.++.. .+++.   +-...+|+|-.  .++++..+.|    ++.||++.+
T Consensus       105 --~~~Dvlip~a~~~~i~~~~~~---~l~a~~I~egAN~~~t~~a~~~L----~~rGi~~~P  157 (227)
T cd01076         105 --LDCDILIPAALENQITADNAD---RIKAKIIVEAANGPTTPEADEIL----HERGVLVVP  157 (227)
T ss_pred             --ecccEEEecCccCccCHHHHh---hceeeEEEeCCCCCCCHHHHHHH----HHCCCEEEC
Confidence              589999999866655 34444   33589999887  4565554444    466777743

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids

>PLN02237 glyceraldehyde-3-phosphate dehydrogenase B

Probab=97.91  E-value=4.5e-05  Score=67.96  Aligned_cols=99  Identities=22%  Similarity=0.185  Sum_probs=64.5

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhc--CCcEEEEEEecC-------------CCCcchhhh-------ccCCCCCCccee
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDSH-------------SVGEDIGMV-------CDMEQPLEIPVM   91 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~--~~~eLvgvid~~-------------~~g~~~~~l-------~g~~~~~gi~v~   91 (163)
                      +++||+|.| .||+||.+.|.+...  +++|+|++=|..             ..|+=-+++       +-+. ...+.++
T Consensus        74 ~~ikVgING-FGRIGR~vlR~~~~~~~~~ievVaINd~~~~~~~ayLlkyDS~hG~f~~~v~~~~~~~L~v~-Gk~I~V~  151 (442)
T PLN02237         74 AKLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSMLGTFKADVKIVDDETISVD-GKPIKVV  151 (442)
T ss_pred             ceEEEEEEC-CChHHHHHHHHHHHccCCCeEEEEECCCCCHHHHHHHHccccCCCCcCCceEECCCCEEEEC-CEEEEEE
Confidence            559999999 799999999987655  789999987721             112100011       0000 1123344


Q ss_pred             C--CHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeC
Q 031216           92 S--DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV  137 (163)
Q Consensus        92 ~--~l~ell~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigt  137 (163)
                      .  +++++-..   +..+|+||++|-.....+.+...++.|...|+=+
T Consensus       152 ~~~dp~~l~W~---~~gVDiViE~TG~f~s~e~a~~hl~aGAkkV~iS  196 (442)
T PLN02237        152 SNRDPLKLPWA---ELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIIT  196 (442)
T ss_pred             EcCCchhCChh---hcCCCEEEEccChhhhHHHHHHHHhCCCEEEEEC
Confidence            2  34343321   2489999988888888899999999997766534

>PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional

Probab=97.89  E-value=7e-05  Score=64.60  Aligned_cols=98  Identities=26%  Similarity=0.229  Sum_probs=66.6

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-------------CCCcchhhh------ccCCCCCCccee--CC
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-------------SVGEDIGMV------CDMEQPLEIPVM--SD   93 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~-------------~~g~~~~~l------~g~~~~~gi~v~--~~   93 (163)
                      ++||+|.| .||+||.+.|.+.+.+++|++++=|..             ..|+=.+++      +-+. ...+.++  .+
T Consensus         2 ~~~i~inG-fGRIGr~~~r~~~~~~~~~vvaiNd~~~~~~~ayll~yDs~hg~~~~~v~~~~~~l~v~-g~~I~v~~~~d   79 (331)
T PRK15425          2 TIKVGING-FGRIGRIVFRAAQKRSDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVN-GKKIRVTAERD   79 (331)
T ss_pred             ceEEEEEe-eChHHHHHHHHHHHCCCCEEEEEecCCCHHHHHHHHccccCCCCcCCcEEecCCEEEEC-CeEEEEEEcCC
Confidence            37999999 699999999998778899999998721             112111111      0000 1223444  36


Q ss_pred             HHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeC
Q 031216           94 LTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV  137 (163)
Q Consensus        94 l~ell~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigt  137 (163)
                      ++++-..   +..+|+|+++|-.....+.+...++.|..+|+=+
T Consensus        80 p~~~~w~---~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iS  120 (331)
T PRK15425         80 PANLKWD---EVGVDVVAEATGLFLTDETARKHITAGAKKVVMT  120 (331)
T ss_pred             hhhCccc---ccCCCEEEEecchhhcHHHHHHHHHCCCEEEEeC
Confidence            6665541   2489999988877777889999999997777534

>PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed

Probab=97.87  E-value=4.8e-05  Score=65.74  Aligned_cols=98  Identities=16%  Similarity=0.170  Sum_probs=65.3

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhc--CCcEEEEEEecC-------------CCCcchhhh------ccCCCCCCccee--
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDSH-------------SVGEDIGMV------CDMEQPLEIPVM--   91 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~--~~~eLvgvid~~-------------~~g~~~~~l------~g~~~~~gi~v~--   91 (163)
                      |+||||.| .||+||.+.|.+.+.  +++++|++-|..             ..|+--+++      +-+. ...+.++  
T Consensus         1 ~~ki~ING-fGRIGR~~~R~~~~~~~~~~~vvaind~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~-g~~I~v~~~   78 (337)
T PRK07403          1 MIRVAING-FGRIGRNFLRCWLGRENSQLELVAINDTSDPRTNAHLLKYDSMLGKLNADISADENSITVN-GKTIKCVSD   78 (337)
T ss_pred             CeEEEEEc-cChHHHHHHHHHHhccCCCeEEEEecCCCCHHHHHHHHhhccCCCCCCCcEEEcCCEEEEC-CEEEEEEEc
Confidence            78999999 799999999997766  689999998731             112110111      0000 1234444  


Q ss_pred             CCHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeC
Q 031216           92 SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV  137 (163)
Q Consensus        92 ~~l~ell~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigt  137 (163)
                      .+++++-..   +.++|+|+++|-.....+.+...++.|...|+=+
T Consensus        79 ~dp~~~~W~---~~gvDiV~e~tG~f~s~~~a~~hl~aGak~V~iS  121 (337)
T PRK07403         79 RNPLNLPWK---EWGIDLIIESTGVFVTKEGASKHIQAGAKKVLIT  121 (337)
T ss_pred             CCcccCChh---hcCCCEEEeccchhhhHHHHHHHhhCCcEEEEeC
Confidence            344554431   2489999988888888899999999997766533

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=97.86  E-value=0.00021  Score=60.08  Aligned_cols=108  Identities=11%  Similarity=0.131  Sum_probs=69.0

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT  114 (163)
                      |.||+++| +|.||..+++.+.+ .+.++. ++|++.  ....++.    ..++....+++++..      ..|+||.+.
T Consensus         1 m~~Ig~IG-lG~mG~~mA~~l~~-~G~~V~-v~d~~~--~~~~~~~----~~g~~~~~s~~~~~~------~aDvVi~~v   65 (296)
T PRK15461          1 MAAIAFIG-LGQMGSPMASNLLK-QGHQLQ-VFDVNP--QAVDALV----DKGATPAASPAQAAA------GAEFVITML   65 (296)
T ss_pred             CCeEEEEe-eCHHHHHHHHHHHH-CCCeEE-EEcCCH--HHHHHHH----HcCCcccCCHHHHHh------cCCEEEEec
Confidence            35899999 79999999999874 567765 567542  2233332    235556678888774      789988555


Q ss_pred             CchhHHHHHH-------HHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeE
Q 031216          115 DASTVYDNVK-------QATAFGMRSVVYVPHIQLETVSALSAFCDKASMV  158 (163)
Q Consensus       115 ~p~~~~~~~~-------~al~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv  158 (163)
                      ++....+.+.       ..+..|. +++-++..++++..+|.+..++.++-
T Consensus        66 p~~~~~~~vl~~~~~i~~~l~~g~-lvid~sT~~p~~~~~l~~~l~~~g~~  115 (296)
T PRK15461         66 PNGDLVRSVLFGENGVCEGLSRDA-LVIDMSTIHPLQTDKLIADMQAKGFS  115 (296)
T ss_pred             CCHHHHHHHHcCcccHhhcCCCCC-EEEECCCCCHHHHHHHHHHHHHcCCc
Confidence            5544333331       1233444 44545556677788888877776644

>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional

Probab=97.85  E-value=5.2e-05  Score=65.50  Aligned_cols=98  Identities=21%  Similarity=0.211  Sum_probs=65.2

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhc---CCcEEEEEEecC-------------CCCcc------hhhhccCCCCCCccee-
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKA---RGMEVAGAIDSH-------------SVGED------IGMVCDMEQPLEIPVM-   91 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~---~~~eLvgvid~~-------------~~g~~------~~~l~g~~~~~gi~v~-   91 (163)
                      |+||+|+|+ |++||.+.|.+.+.   ++++|+++=|..             ..|+=      .+..+-+. ...+.++ 
T Consensus         1 ~~~IaInGf-GrIGR~~lr~l~e~~~~~~l~vvaind~~~~~~~ayll~ydS~hg~~~~~v~~~~~~l~v~-g~~i~v~~   78 (336)
T PRK13535          1 TIRVAINGF-GRIGRNVLRALYESGRRAEITVVAINELADAEGMAHLLKYDTSHGRFAWDVRQERDQLFVG-DDAIRLLH   78 (336)
T ss_pred             CeEEEEECc-CHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHhhhccCCCCCCCcEEecCCEEEEC-CEEEEEEE
Confidence            589999996 99999999998763   589999887511             11110      01111111 1234444 


Q ss_pred             -CCHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeC
Q 031216           92 -SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV  137 (163)
Q Consensus        92 -~~l~ell~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigt  137 (163)
                       .+++++-..   +..+|+|+++|-.....+.+..++++|..+|+=+
T Consensus        79 ~~~p~~~~w~---~~gvDiVle~tG~~~s~~~a~~~l~aGAk~V~iS  122 (336)
T PRK13535         79 ERDIASLPWR---ELGVDVVLDCTGVYGSREDGEAHIAAGAKKVLFS  122 (336)
T ss_pred             cCCcccCccc---ccCCCEEEEccchhhhHHHHHHHHHcCCEEEEec
Confidence             366665432   2589999988888888899999999997766544

>PRK07680 late competence protein ComER; Validated

Probab=97.84  E-value=0.00018  Score=59.60  Aligned_cols=101  Identities=10%  Similarity=0.100  Sum_probs=62.7

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCc--EEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEc
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGM--EVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~--eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDf  113 (163)
                      +||+|+| +|.||+.+++.+.+...+  +-+.+++++.  .....+...  ..++.++.+.++++.      ++|+||.+
T Consensus         1 m~I~iIG-~G~mG~ala~~L~~~g~~~~~~v~v~~r~~--~~~~~~~~~--~~g~~~~~~~~~~~~------~aDiVila   69 (273)
T PRK07680          1 MNIGFIG-TGNMGTILIEAFLESGAVKPSQLTITNRTP--AKAYHIKER--YPGIHVAKTIEEVIS------QSDLIFIC   69 (273)
T ss_pred             CEEEEEC-ccHHHHHHHHHHHHCCCCCcceEEEECCCH--HHHHHHHHH--cCCeEEECCHHHHHH------hCCEEEEe
Confidence            4799999 699999999998755322  3355677542  122222210  125667788888764      89999977


Q ss_pred             cCchhHHHHHHHH---HHcCCcEEEeCCCCCHHHHHH
Q 031216          114 TDASTVYDNVKQA---TAFGMRSVVYVPHIQLETVSA  147 (163)
Q Consensus       114 T~p~~~~~~~~~a---l~~G~~vVigttg~~~e~~~~  147 (163)
                      +.|....+.+...   +..+..+|.-..|.+.++.+.
T Consensus        70 v~p~~~~~vl~~l~~~l~~~~~iis~~ag~~~~~L~~  106 (273)
T PRK07680         70 VKPLDIYPLLQKLAPHLTDEHCLVSITSPISVEQLET  106 (273)
T ss_pred             cCHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHH
Confidence            7777766665543   334554444344676555443

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=97.83  E-value=0.00033  Score=58.90  Aligned_cols=109  Identities=13%  Similarity=0.092  Sum_probs=63.3

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEccC
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT~  115 (163)
                      +||+++| +|+||..+++.+.+ .+.++.+ .|++.  .....+.    ..+...+.+++++.+.   ...+|+|+-+.+
T Consensus         1 M~Ig~IG-lG~mG~~la~~L~~-~g~~V~~-~dr~~--~~~~~l~----~~g~~~~~s~~~~~~~---~~~~dvIi~~vp   68 (298)
T TIGR00872         1 MQLGLIG-LGRMGANIVRRLAK-RGHDCVG-YDHDQ--DAVKAMK----EDRTTGVANLRELSQR---LSAPRVVWVMVP   68 (298)
T ss_pred             CEEEEEc-chHHHHHHHHHHHH-CCCEEEE-EECCH--HHHHHHH----HcCCcccCCHHHHHhh---cCCCCEEEEEcC
Confidence            4899999 79999999999874 6888875 77643  1222332    2344445677776542   136899885555


Q ss_pred             chhHHHHH---HHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCe
Q 031216          116 ASTVYDNV---KQATAFGMRSVVYVPHIQLETVSALSAFCDKASM  157 (163)
Q Consensus       116 p~~~~~~~---~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~V  157 (163)
                      +..+.+.+   ...++.|.-+|-.++... ++..++.+..++.++
T Consensus        69 ~~~~~~v~~~l~~~l~~g~ivid~st~~~-~~t~~~~~~~~~~g~  112 (298)
T TIGR00872        69 HGIVDAVLEELAPTLEKGDIVIDGGNSYY-KDSLRRYKLLKEKGI  112 (298)
T ss_pred             chHHHHHHHHHHhhCCCCCEEEECCCCCc-ccHHHHHHHHHhcCC
Confidence            54333333   334456655555444442 333444444444443

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=97.82  E-value=0.00029  Score=58.70  Aligned_cols=104  Identities=13%  Similarity=0.110  Sum_probs=64.6

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEccCc
Q 031216           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDA  116 (163)
Q Consensus        37 rV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT~p  116 (163)
                      ||+|+| +|.||+.+++.+.+ .+.++. ++|++.  .....+.    ..+....+++++++.      +.|+||.+.+.
T Consensus         1 ~IgvIG-~G~mG~~iA~~l~~-~G~~V~-~~dr~~--~~~~~~~----~~g~~~~~~~~~~~~------~aDivi~~vp~   65 (291)
T TIGR01505         1 KVGFIG-LGIMGSPMSINLAK-AGYQLH-VTTIGP--EVADELL----AAGAVTAETARQVTE------QADVIFTMVPD   65 (291)
T ss_pred             CEEEEE-ecHHHHHHHHHHHH-CCCeEE-EEcCCH--HHHHHHH----HCCCcccCCHHHHHh------cCCEEEEecCC
Confidence            699999 79999999999874 578877 567542  2222322    335555678888875      89999955443


Q ss_pred             hhHHH-HH------HHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcC
Q 031216          117 STVYD-NV------KQATAFGMRSVVYVPHIQLETVSALSAFCDKAS  156 (163)
Q Consensus       117 ~~~~~-~~------~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~  156 (163)
                      ....+ .+      ...+..|. +|+-++..++.+..+|.+..++.+
T Consensus        66 ~~~~~~v~~~~~~~~~~~~~g~-iivd~st~~~~~~~~l~~~l~~~g  111 (291)
T TIGR01505        66 SPQVEEVAFGENGIIEGAKPGK-TLVDMSSISPIESKRFAKAVKEKG  111 (291)
T ss_pred             HHHHHHHHcCcchHhhcCCCCC-EEEECCCCCHHHHHHHHHHHHHcC
Confidence            32332 22      11223344 444455566776677777776644

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=97.81  E-value=0.00022  Score=59.77  Aligned_cols=103  Identities=12%  Similarity=0.116  Sum_probs=71.9

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCc--EEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEE
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGM--EVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~--eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVID  112 (163)
                      |+||+++| .|+||+.+++-+.+...+  +-+-+.++...  ....+..   .+++..+++.+++..      +.|+|+.
T Consensus         1 ~~~IgfIG-~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e--~~~~l~~---~~g~~~~~~~~~~~~------~advv~L   68 (266)
T COG0345           1 MMKIGFIG-AGNMGEAILSGLLKSGALPPEEIIVTNRSEE--KRAALAA---EYGVVTTTDNQEAVE------EADVVFL   68 (266)
T ss_pred             CceEEEEc-cCHHHHHHHHHHHhcCCCCcceEEEeCCCHH--HHHHHHH---HcCCcccCcHHHHHh------hCCEEEE
Confidence            57999999 599999999999876622  34445554321  1112221   455555677777764      8999998


Q ss_pred             ccCchhHHHHHHHHH--HcCCcEEEeCCCCCHHHHHHHH
Q 031216          113 FTDASTVYDNVKQAT--AFGMRSVVYVPHIQLETVSALS  149 (163)
Q Consensus       113 fT~p~~~~~~~~~al--~~G~~vVigttg~~~e~~~~L~  149 (163)
                      ...|....+.+....  ..++.+|+-..|.+-++++.+.
T Consensus        69 avKPq~~~~vl~~l~~~~~~~lvISiaAGv~~~~l~~~l  107 (266)
T COG0345          69 AVKPQDLEEVLSKLKPLTKDKLVISIAAGVSIETLERLL  107 (266)
T ss_pred             EeChHhHHHHHHHhhcccCCCEEEEEeCCCCHHHHHHHc
Confidence            888988877777664  4788898878899877655443

>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=97.81  E-value=9.7e-05  Score=61.54  Aligned_cols=95  Identities=16%  Similarity=0.178  Sum_probs=57.9

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcc--------------
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSI--------------  101 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~--------------  101 (163)
                      ++++++| .||||..+++++. ..+.++|+ +|......  .++.    ..++...+++++++..+              
T Consensus         1 M~iGmiG-LGrMG~n~v~rl~-~~ghdvV~-yD~n~~av--~~~~----~~ga~~a~sl~el~~~L~~pr~vWlMvPag~   71 (300)
T COG1023           1 MQIGMIG-LGRMGANLVRRLL-DGGHDVVG-YDVNQTAV--EELK----DEGATGAASLDELVAKLSAPRIVWLMVPAGD   71 (300)
T ss_pred             Ccceeec-cchhhHHHHHHHH-hCCCeEEE-EcCCHHHH--HHHH----hcCCccccCHHHHHHhcCCCcEEEEEccCCC
Confidence            5799999 8999999999987 56888885 66321100  0000    11111122222222111              


Q ss_pred             ---------c-ccCCccEEEEccCc--hhHHHHHHHHHHcCCcEE-EeCCC
Q 031216          102 ---------S-QSKARAVVIDFTDA--STVYDNVKQATAFGMRSV-VYVPH  139 (163)
Q Consensus       102 ---------~-~~~~~DVVIDfT~p--~~~~~~~~~al~~G~~vV-igttg  139 (163)
                               + ...+=|+|||-.+.  .......+.+.++|+|.+ +||+|
T Consensus        72 it~~vi~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~flD~GTSG  122 (300)
T COG1023          72 ITDAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFLDVGTSG  122 (300)
T ss_pred             chHHHHHHHHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCeEEeccCCC
Confidence                     0 12467999997644  455677788899999998 77763

>PRK15059 tartronate semialdehyde reductase; Provisional

Probab=97.77  E-value=0.00035  Score=58.79  Aligned_cols=107  Identities=13%  Similarity=0.146  Sum_probs=69.1

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEccC
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT~  115 (163)
                      +||+++| +|+||..+++.+. ..+.++. +.|+...   ...+.    ..++...+++.++..      ..|+||-+..
T Consensus         1 m~Ig~IG-lG~MG~~ma~~L~-~~G~~v~-v~~~~~~---~~~~~----~~g~~~~~s~~~~~~------~advVi~~v~   64 (292)
T PRK15059          1 MKLGFIG-LGIMGTPMAINLA-RAGHQLH-VTTIGPV---ADELL----SLGAVSVETARQVTE------ASDIIFIMVP   64 (292)
T ss_pred             CeEEEEc-cCHHHHHHHHHHH-HCCCeEE-EEeCCHh---HHHHH----HcCCeecCCHHHHHh------cCCEEEEeCC
Confidence            3799999 7999999999987 4577776 5665321   22222    345666778888764      8999884443


Q ss_pred             ch-hHHHHH------HHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeEE
Q 031216          116 AS-TVYDNV------KQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVS  159 (163)
Q Consensus       116 p~-~~~~~~------~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv~  159 (163)
                      .. .+.+.+      ...+..| .+|+-.+..++++..++.+.+++.++-|
T Consensus        65 ~~~~v~~v~~~~~g~~~~~~~g-~ivvd~sT~~p~~~~~~~~~~~~~G~~~  114 (292)
T PRK15059         65 DTPQVEEVLFGENGCTKASLKG-KTIVDMSSISPIETKRFARQVNELGGDY  114 (292)
T ss_pred             ChHHHHHHHcCCcchhccCCCC-CEEEECCCCCHHHHHHHHHHHHHcCCCE
Confidence            22 223322      1112334 3566677778888888888887776543

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=97.74  E-value=0.0002  Score=59.89  Aligned_cols=98  Identities=16%  Similarity=0.216  Sum_probs=56.5

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhcc----------CCCCCCcceeCCHHHHHhccccc
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCD----------MEQPLEIPVMSDLTMVLGSISQS  104 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g----------~~~~~gi~v~~~l~ell~~~~~~  104 (163)
                      |+||+|+| .|.||..++..+.+ .+.++. ++++..  .....+..          ...+.++...+++++++.     
T Consensus         1 mmkI~iiG-~G~mG~~~a~~L~~-~g~~V~-~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----   70 (325)
T PRK00094          1 MMKIAVLG-AGSWGTALAIVLAR-NGHDVT-LWARDP--EQAAEINADRENPRYLPGIKLPDNLRATTDLAEALA-----   70 (325)
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHh-CCCEEE-EEECCH--HHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHh-----
Confidence            67999999 59999999999874 577764 566431  01111110          000124555678887764     


Q ss_pred             CCccEEEEccCchhHHHHHHHHH---HcCCcEEEeCCCCCHH
Q 031216          105 KARAVVIDFTDASTVYDNVKQAT---AFGMRSVVYVPHIQLE  143 (163)
Q Consensus       105 ~~~DVVIDfT~p~~~~~~~~~al---~~G~~vVigttg~~~e  143 (163)
                       ++|+||.++.+....+.+....   ..+..+|.-+.|++.+
T Consensus        71 -~~D~vi~~v~~~~~~~v~~~l~~~~~~~~~vi~~~ngv~~~  111 (325)
T PRK00094         71 -DADLILVAVPSQALREVLKQLKPLLPPDAPIVWATKGIEPG  111 (325)
T ss_pred             -CCCEEEEeCCHHHHHHHHHHHHhhcCCCCEEEEEeecccCC
Confidence             8899996655543333333332   3455555433355543

>PTZ00431 pyrroline carboxylate reductase; Provisional

Probab=97.71  E-value=0.00057  Score=56.42  Aligned_cols=94  Identities=7%  Similarity=0.053  Sum_probs=61.2

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCc---EEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEE
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGM---EVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~---eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVID  112 (163)
                      +||+++| +|.||..+++.+.+...+   ++. +.+++..            ..++....+.+++..      ++|+||.
T Consensus         4 mkI~iIG-~G~mG~ai~~~l~~~~~~~~~~i~-~~~~~~~------------~~~~~~~~~~~~~~~------~~D~Vil   63 (260)
T PTZ00431          4 IRVGFIG-LGKMGSALAYGIENSNIIGKENIY-YHTPSKK------------NTPFVYLQSNEELAK------TCDIIVL   63 (260)
T ss_pred             CEEEEEC-ccHHHHHHHHHHHhCCCCCcceEE-EECCChh------------cCCeEEeCChHHHHH------hCCEEEE
Confidence            6899999 699999999999865422   243 3343210            112233457777664      7899998


Q ss_pred             ccCchhHHHHHHHHHH--cCCcEEEeCCCCCHHHHHHHH
Q 031216          113 FTDASTVYDNVKQATA--FGMRSVVYVPHIQLETVSALS  149 (163)
Q Consensus       113 fT~p~~~~~~~~~al~--~G~~vVigttg~~~e~~~~L~  149 (163)
                      ++.|....+.+.....  .+..+|+-..|.+.++.+.+.
T Consensus        64 avkp~~~~~vl~~i~~~l~~~~iIS~~aGi~~~~l~~~~  102 (260)
T PTZ00431         64 AVKPDLAGKVLLEIKPYLGSKLLISICGGLNLKTLEEMV  102 (260)
T ss_pred             EeCHHHHHHHHHHHHhhccCCEEEEEeCCccHHHHHHHc
Confidence            8888877766655432  245666666688877766553

>COG4693 PchG Oxidoreductase (NAD-binding), involved in siderophore biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=97.69  E-value=0.00012  Score=62.04  Aligned_cols=111  Identities=15%  Similarity=0.188  Sum_probs=82.8

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhc-CCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccE--EE
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV--VI  111 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~-~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DV--VI  111 (163)
                      +.+|.|+|.  +.|+..+..+... |+++|+|+...-.  ++-.+++-   .+|++.|.++||+-+      .+|+  |+
T Consensus         4 pksVvV~Gt--rFGq~Ylaaf~~~~~~~eLaGiLaqGS--eRSRaLAh---~~GVply~~~eelpd------~idiACVv   70 (361)
T COG4693           4 PKSVVVCGT--RFGQFYLAAFAAAPPRFELAGILAQGS--ERSRALAH---RLGVPLYCEVEELPD------DIDIACVV   70 (361)
T ss_pred             CceEEEecc--hHHHHHHHHhccCCCCceeehhhhccc--HHHHHHHH---HhCCccccCHhhCCC------CCCeEEEE
Confidence            458999994  9999988887776 8999999988422  22334432   679999999999875      6663  33


Q ss_pred             Ecc-C-chhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeEE
Q 031216          112 DFT-D-ASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVS  159 (163)
Q Consensus       112 DfT-~-p~~~~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv~  159 (163)
                      .=+ . -..-.+.++..+++|++|+.+-|=. ++++.+|.++|++.|.-|
T Consensus        71 Vrsai~Gg~Gs~larall~RGi~VlqEHPl~-p~di~~l~rlA~rqG~~y  119 (361)
T COG4693          71 VRSAIVGGQGSALARALLARGIHVLQEHPLH-PRDIQDLLRLAERQGRRY  119 (361)
T ss_pred             EeeeeecCCcHHHHHHHHHcccHHHHhCCCC-HHHHHHHHHHHHHhCcEE
Confidence            222 2 2334688899999999999976644 678999999999987644

>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins

Probab=97.69  E-value=9.4e-05  Score=63.05  Aligned_cols=83  Identities=22%  Similarity=0.195  Sum_probs=61.5

Q ss_pred             EecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc------CchhHHHHHHHHHHcCCcEEEeCCCC
Q 031216           67 IDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT------DASTVYDNVKQATAFGMRSVVYVPHI  140 (163)
Q Consensus        67 id~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT------~p~~~~~~~~~al~~G~~vVigttg~  140 (163)
                      +|++..|++++++++.  ..++|++++++++ .     ..+|++|.-.      .|+.+.+.+..|+++|++||.|-..+
T Consensus         1 ID~~~aG~~a~e~~~~--~~~iPi~~~~~~a-~-----~~~~~liiGiA~~GG~lp~~w~~~i~~Ai~~Gl~IvsGLH~~   72 (301)
T PF07755_consen    1 IDSRLAGKDAGEVLGG--KRGIPIVASLEEA-A-----AGADTLIIGIAPAGGRLPPSWRPVILEAIEAGLDIVSGLHDF   72 (301)
T ss_dssp             E-TTTTTSBHHHCCSS--SS--BEESSHHHH-H-----CT-SEEEE---STTHCCHCCHHHHHHHHHHTT-EEEE-SSS-
T ss_pred             CCcccCCCcHHHhcCC--CCCCCccCCHHHH-h-----cCCCEEEEecCcCCCcCCHHHHHHHHHHHHcCCCEEecChhh
Confidence            5777889999999986  4899999999999 4     5999988532      57788899999999999999987654


Q ss_pred             CHHHHHHHHHHhhhcCeE
Q 031216          141 QLETVSALSAFCDKASMV  158 (163)
Q Consensus       141 ~~e~~~~L~~~A~~~~Vv  158 (163)
                       ..+.++|.++|++.++-
T Consensus        73 -L~ddpel~~~A~~~g~~   89 (301)
T PF07755_consen   73 -LSDDPELAAAAKKNGVR   89 (301)
T ss_dssp             -HCCHHHHHCCHHCCT--
T ss_pred             -hccCHHHHHHHHHcCCe
Confidence             44568899999998763

The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.

>COG3367 Uncharacterized conserved protein [Function unknown]

Probab=97.66  E-value=0.00013  Score=62.59  Aligned_cols=103  Identities=15%  Similarity=0.214  Sum_probs=78.8

Q ss_pred             HHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc------CchhHHH
Q 031216           48 GRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT------DASTVYD  121 (163)
Q Consensus        48 G~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT------~p~~~~~  121 (163)
                      |+...-.+.....+.+++++|+...+.+....++.. ..++|+.+|++++++.     ..|++|.-.      .|+.+.+
T Consensus        15 ~kta~Gllr~~~~~~iv~vvD~~~~~~~~~~~l~~~-~~~vpii~s~~~~~e~-----~~e~liIgia~~gG~~~~~~~~   88 (339)
T COG3367          15 GKTAVGLLRYSEKYAIVAVVDRREAGDDTPRELGGD-KADVPIISSVEEALEG-----LAEALIIGIAPPGGVLPESWRE   88 (339)
T ss_pred             chhhhhhhcccccceeeeEEeeeccccccHHHhCCc-cCCCcccccHHHHHhc-----CcceEEEEeecCCCcCcHHHHH
Confidence            444444444455599999999877774544444432 6789999999999973     458877654      4667789


Q ss_pred             HHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCe
Q 031216          122 NVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASM  157 (163)
Q Consensus       122 ~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~V  157 (163)
                      +++.|+++|++||.|-..+ .++..++.++|++.|+
T Consensus        89 ~i~eAl~~G~nVvsglh~~-ls~dp~~~k~A~~~G~  123 (339)
T COG3367          89 YIVEALEAGMNVVSGLHSF-LSDDPEFVKLAERTGV  123 (339)
T ss_pred             HHHHHHHhCchhhhhhHHH-hhcChHHHHHHHHcCC
Confidence            9999999999999987777 6778999999999887

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=97.66  E-value=0.00044  Score=55.58  Aligned_cols=34  Identities=26%  Similarity=0.391  Sum_probs=31.0

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~   70 (163)
                      |||+|+||+|+.|+.+++.+. ..|.|+++++.+.
T Consensus         1 mKIaiIgAsG~~Gs~i~~EA~-~RGHeVTAivRn~   34 (211)
T COG2910           1 MKIAIIGASGKAGSRILKEAL-KRGHEVTAIVRNA   34 (211)
T ss_pred             CeEEEEecCchhHHHHHHHHH-hCCCeeEEEEeCh
Confidence            699999999999999999987 6899999999853

>PTZ00434 cytosolic glyceraldehyde 3-phosphate dehydrogenase; Provisional

Probab=97.65  E-value=0.00025  Score=61.83  Aligned_cols=99  Identities=22%  Similarity=0.173  Sum_probs=60.0

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhc----CCcEEEEEEecC--------------CCCcchhhh--------------ccC
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKA----RGMEVAGAIDSH--------------SVGEDIGMV--------------CDM   82 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~----~~~eLvgvid~~--------------~~g~~~~~l--------------~g~   82 (163)
                      ++||||.| .||+||.+.|.+.+.    +++|+|++-|+.              ..|+=.+++              +-+
T Consensus         3 ~ikVgING-FGRIGR~v~R~~~~~~~~~~~ievVAINd~~~~~~~~ayLlkyDS~hG~~~~~v~~~~~~~~~~~~~~l~i   81 (361)
T PTZ00434          3 PIKVGING-FGRIGRMVFQAICDQGLIGTEIDVVAVVDMSTNAEYFAYQMKYDTVHGRPKYTVETTKSSPSVKTDDVLVV   81 (361)
T ss_pred             ceEEEEEC-cChHHHHHHHHHHHcccCCCCeEEEEEeCCCCChhheeeeeeeecCCCCcCCceeecccccccccCCEEEE
Confidence            47999999 699999999997764    689999998831              112210111              000


Q ss_pred             CCCCCccee---CCHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcC-CcEEEeCC
Q 031216           83 EQPLEIPVM---SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFG-MRSVVYVP  138 (163)
Q Consensus        83 ~~~~gi~v~---~~l~ell~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G-~~vVigtt  138 (163)
                      . ...|.++   .+++++-..   +..+|+|||+|-.-...+.+..-++.| +.||+-.|
T Consensus        82 n-g~~I~~~~~~~dP~~ipW~---~~gvD~ViE~TG~f~t~~~a~~Hl~~GAKkViiSAP  137 (361)
T PTZ00434         82 N-GHRIKCVKAQRNPADLPWG---KLGVDYVIESTGLFTDKLAAEGHLKGGAKKVVISAP  137 (361)
T ss_pred             C-CEEEEEEEecCChhhCchh---hcCCCEEEeCceeeccHHHHhhhhhcCCCEEEECCC
Confidence            0 1234443   466666542   358999999884333334444445566 66666444

>PRK12491 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.65  E-value=0.00062  Score=56.85  Aligned_cols=100  Identities=10%  Similarity=0.089  Sum_probs=64.5

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcC---CcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEE
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKAR---GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~---~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVID  112 (163)
                      +||+++| +|+||..+++.+.+..   ..++. ++|++.  .....+..   ..++.++++.++++.      +.|+||-
T Consensus         3 ~~IgfIG-~G~MG~aia~~L~~~g~~~~~~I~-v~~r~~--~~~~~l~~---~~g~~~~~~~~e~~~------~aDiIiL   69 (272)
T PRK12491          3 KQIGFIG-CGNMGIAMIGGMINKNIVSPDQII-CSDLNV--SNLKNASD---KYGITITTNNNEVAN------SADILIL   69 (272)
T ss_pred             CeEEEEC-ccHHHHHHHHHHHHCCCCCCceEE-EECCCH--HHHHHHHH---hcCcEEeCCcHHHHh------hCCEEEE
Confidence            5899999 6999999999987543   12444 456432  22222221   245666778888764      8899997


Q ss_pred             ccCchhHHHHHHHH---HHcCCcEEEeCCCCCHHHHHHH
Q 031216          113 FTDASTVYDNVKQA---TAFGMRSVVYVPHIQLETVSAL  148 (163)
Q Consensus       113 fT~p~~~~~~~~~a---l~~G~~vVigttg~~~e~~~~L  148 (163)
                      +..|....+.+...   ++.+.-+|.--.|.+-++++++
T Consensus        70 avkP~~~~~vl~~l~~~~~~~~lvISi~AGi~i~~l~~~  108 (272)
T PRK12491         70 SIKPDLYSSVINQIKDQIKNDVIVVTIAAGKSIKSTENE  108 (272)
T ss_pred             EeChHHHHHHHHHHHHhhcCCcEEEEeCCCCcHHHHHHh
Confidence            88887766655443   3345555555558887775554

>PRK08618 ornithine cyclodeaminase; Validated

Probab=97.62  E-value=0.00015  Score=61.92  Aligned_cols=91  Identities=12%  Similarity=0.102  Sum_probs=63.8

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhcc-CCCCCC--cceeCCHHHHHhcccccCCccEEEE
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCD-MEQPLE--IPVMSDLTMVLGSISQSKARAVVID  112 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g-~~~~~g--i~v~~~l~ell~~~~~~~~~DVVID  112 (163)
                      .+++|+| +|.+|+.+++.+....+++-+.++++..  .+..++.. +....+  +..++++++++.      +.|+||.
T Consensus       128 ~~v~iiG-aG~~a~~~~~al~~~~~~~~v~v~~r~~--~~a~~~~~~~~~~~~~~~~~~~~~~~~~~------~aDiVi~  198 (325)
T PRK08618        128 KTLCLIG-TGGQAKGQLEAVLAVRDIERVRVYSRTF--EKAYAFAQEIQSKFNTEIYVVNSADEAIE------EADIIVT  198 (325)
T ss_pred             cEEEEEC-CcHHHHHHHHHHHhcCCccEEEEECCCH--HHHHHHHHHHHHhcCCcEEEeCCHHHHHh------cCCEEEE
Confidence            5899999 6999999999887778999999999753  12222221 000122  345789999885      8999995


Q ss_pred             ccCchhHHHHHHHHHHcCCcEE-EeC
Q 031216          113 FTDASTVYDNVKQATAFGMRSV-VYV  137 (163)
Q Consensus       113 fT~p~~~~~~~~~al~~G~~vV-igt  137 (163)
                      +| |....-.. ..++.|+||. +|.
T Consensus       199 aT-~s~~p~i~-~~l~~G~hV~~iGs  222 (325)
T PRK08618        199 VT-NAKTPVFS-EKLKKGVHINAVGS  222 (325)
T ss_pred             cc-CCCCcchH-HhcCCCcEEEecCC
Confidence            55 55554444 7889999985 444

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=97.62  E-value=0.00013  Score=55.90  Aligned_cols=95  Identities=16%  Similarity=0.161  Sum_probs=56.5

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC--------CcchhhhccCCCCCCcceeCCHHHHHhcccccCCcc
Q 031216           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV--------GEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA  108 (163)
Q Consensus        37 rV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~--------g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~D  108 (163)
                      ||+|+|+ |.+|..++..+.. .+.++. +..++..        +....-+.+..-+..+.+++|++++++      +.|
T Consensus         1 KI~ViGa-G~~G~AlA~~la~-~g~~V~-l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~------~ad   71 (157)
T PF01210_consen    1 KIAVIGA-GNWGTALAALLAD-NGHEVT-LWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALE------DAD   71 (157)
T ss_dssp             EEEEESS-SHHHHHHHHHHHH-CTEEEE-EETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHT------T-S
T ss_pred             CEEEECc-CHHHHHHHHHHHH-cCCEEE-EEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhC------ccc
Confidence            7999995 9999999998874 555555 4443210        000011111111335667899999985      899


Q ss_pred             EEEEccCchhHHHHH---HHHHHcCCcEEEeCCCC
Q 031216          109 VVIDFTDASTVYDNV---KQATAFGMRSVVYVPHI  140 (163)
Q Consensus       109 VVIDfT~p~~~~~~~---~~al~~G~~vVigttg~  140 (163)
                      ++|-.++...+.+.+   ..+++.+..+|+-+.|+
T Consensus        72 ~IiiavPs~~~~~~~~~l~~~l~~~~~ii~~~KG~  106 (157)
T PF01210_consen   72 IIIIAVPSQAHREVLEQLAPYLKKGQIIISATKGF  106 (157)
T ss_dssp             EEEE-S-GGGHHHHHHHHTTTSHTT-EEEETS-SE
T ss_pred             EEEecccHHHHHHHHHHHhhccCCCCEEEEecCCc
Confidence            988555444444444   44566888988877687

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PLN02712 arogenate dehydrogenase

Probab=97.60  E-value=0.0012  Score=61.69  Aligned_cols=104  Identities=13%  Similarity=0.117  Sum_probs=64.8

Q ss_pred             CCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEE
Q 031216           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (163)
Q Consensus        33 ~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVID  112 (163)
                      ++++||+|+| .|+||+.+++.+.+. +.+|.+ +|+... ..   .+   ...++..+.+++++..     ..+|+||.
T Consensus        50 ~~~~kIgIIG-~G~mG~slA~~L~~~-G~~V~~-~dr~~~-~~---~A---~~~Gv~~~~d~~e~~~-----~~aDvViL  114 (667)
T PLN02712         50 TTQLKIAIIG-FGNYGQFLAKTLISQ-GHTVLA-HSRSDH-SL---AA---RSLGVSFFLDPHDLCE-----RHPDVILL  114 (667)
T ss_pred             CCCCEEEEEc-cCHHHHHHHHHHHHC-CCEEEE-EeCCHH-HH---HH---HHcCCEEeCCHHHHhh-----cCCCEEEE
Confidence            3568999999 699999999998754 788876 554321 11   11   1345666788888764     36999997


Q ss_pred             ccCchhHHHHHHHHH----HcCCcEEEeCCCCCHHHHHHHHHHh
Q 031216          113 FTDASTVYDNVKQAT----AFGMRSVVYVPHIQLETVSALSAFC  152 (163)
Q Consensus       113 fT~p~~~~~~~~~al----~~G~~vVigttg~~~e~~~~L~~~A  152 (163)
                      ++.|....+.+....    +.| .+|+-.......-.+.+.+..
T Consensus       115 avP~~~~~~vl~~l~~~~l~~g-~iVvDv~SvK~~~~~~l~~~l  157 (667)
T PLN02712        115 CTSIISTENVLKSLPLQRLKRN-TLFVDVLSVKEFAKNLLLDYL  157 (667)
T ss_pred             cCCHHHHHHHHHhhhhhcCCCC-eEEEECCCCcHHHHHHHHHhc
Confidence            777766666655432    223 355545444333333444443

>PLN02272 glyceraldehyde-3-phosphate dehydrogenase

Probab=97.60  E-value=0.00028  Score=62.65  Aligned_cols=99  Identities=21%  Similarity=0.263  Sum_probs=64.1

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC--------------CCCcchhhh-------ccCCCCCCccee--
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH--------------SVGEDIGMV-------CDMEQPLEIPVM--   91 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~--------------~~g~~~~~l-------~g~~~~~gi~v~--   91 (163)
                      |+||||.| .||+||.+.|.+...++++++++-|+.              ..|+=.+++       +-+. ...+.++  
T Consensus        85 ~~kvgInG-FGRIGR~v~R~~~~~~~i~vvaINdp~~~~~~~ayllkyDS~hG~f~~~v~~~~~~~l~~~-G~~I~V~~~  162 (421)
T PLN02272         85 KTKIGING-FGRIGRLVLRIATSRDDIEVVAVNDPFIDAKYMAYMFKYDSTHGNFKGTINVVDDSTLEIN-GKQIKVTSK  162 (421)
T ss_pred             ceEEEEEC-cCHHHHHHHHHHhhcCCcEEEEecCCCCCHHHHHHHhhhccCCCCCCCcEEEccCCEEEEC-CEEEEEEec
Confidence            57999999 799999999998766899999988731              112111111       0000 1123343  


Q ss_pred             CCHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCC-cEEEeCC
Q 031216           92 SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGM-RSVVYVP  138 (163)
Q Consensus        92 ~~l~ell~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~-~vVigtt  138 (163)
                      .+++++...   +.++|+|+++|-.....+.+...++.|. .|||-.|
T Consensus       163 ~dp~~~~w~---~~gVDiVlesTG~f~s~e~a~~hl~aGAkkVVIdap  207 (421)
T PLN02272        163 RDPAEIPWG---DFGAEYVVESSGVFTTVEKASAHLKGGAKKVVISAP  207 (421)
T ss_pred             CCcccCccc---ccCCCEEEEcCchhccHHHHHHHhhCCCCEEEECCC
Confidence            355554431   2379999988877777888888889984 5665444

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=97.58  E-value=0.00059  Score=55.45  Aligned_cols=114  Identities=12%  Similarity=0.150  Sum_probs=72.7

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhhccCC-CCCCccee-----CCHHHHHhccc
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMVCDME-QPLEIPVM-----SDLTMVLGSIS  102 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~-----~~g~~~~~l~g~~-~~~gi~v~-----~~l~ell~~~~  102 (163)
                      +..||+|.| .|++|+.+++.+.+ .|..++++.|++     + |-|+.+++... ...++..+     .+.++++.   
T Consensus        22 ~g~~vaIqG-fGnVG~~~a~~L~~-~G~~vV~vsD~~g~i~~~-Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~---   95 (217)
T cd05211          22 EGLTVAVQG-LGNVGWGLAKKLAE-EGGKVLAVSDPDGYIYDP-GITTEELINYAVALGGSARVKVQDYFPGEAILG---   95 (217)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHH-cCCEEEEEEcCCCcEECC-CCCHHHHHHHHHhhCCccccCcccccCccccee---
Confidence            458999999 79999999999874 589999999953     3 55554443211 01122222     23356664   


Q ss_pred             ccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeCC--CCCHHHHHHHHHHhhhcCeEEcC
Q 031216          103 QSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMVSTG  161 (163)
Q Consensus       103 ~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigtt--g~~~e~~~~L~~~A~~~~Vv~tg  161 (163)
                        .++||+|.++..+..  +...+.+.+.++|+|..  .++++..+.|    ++.||++-+
T Consensus        96 --~~~DVlipaA~~~~i--~~~~a~~l~a~~V~e~AN~p~t~~a~~~L----~~~Gi~v~P  148 (217)
T cd05211          96 --LDVDIFAPCALGNVI--DLENAKKLKAKVVAEGANNPTTDEALRIL----HERGIVVAP  148 (217)
T ss_pred             --ccccEEeeccccCcc--ChhhHhhcCccEEEeCCCCCCCHHHHHHH----HHCCcEEEC
Confidence              589999977755433  22334466799999876  3566544444    445677643

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=97.57  E-value=0.00034  Score=55.79  Aligned_cols=88  Identities=24%  Similarity=0.308  Sum_probs=58.1

Q ss_pred             EEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcce----eCCH---HHHHhcccccCCccEE
Q 031216           38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV----MSDL---TMVLGSISQSKARAVV  110 (163)
Q Consensus        38 V~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v----~~~l---~ell~~~~~~~~~DVV  110 (163)
                      |+|+|++|+.|+.+++.|.+ ++.++.+++.+.. ......+-    ..|+.+    ++|.   .+++      ..+|+|
T Consensus         1 I~V~GatG~~G~~v~~~L~~-~~~~V~~l~R~~~-~~~~~~l~----~~g~~vv~~d~~~~~~l~~al------~g~d~v   68 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLS-AGFSVRALVRDPS-SDRAQQLQ----ALGAEVVEADYDDPESLVAAL------KGVDAV   68 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHH-TTGCEEEEESSSH-HHHHHHHH----HTTTEEEES-TT-HHHHHHHH------TTCSEE
T ss_pred             CEEECCccHHHHHHHHHHHh-CCCCcEEEEeccc-hhhhhhhh----cccceEeecccCCHHHHHHHH------cCCceE
Confidence            78999999999999999997 9999998887431 11122221    122221    2333   4455      499999


Q ss_pred             EEccC---ch---hHHHHHHHHHHcCCcEEEeC
Q 031216          111 IDFTD---AS---TVYDNVKQATAFGMRSVVYV  137 (163)
Q Consensus       111 IDfT~---p~---~~~~~~~~al~~G~~vVigt  137 (163)
                      +..+.   +.   .....+++|.++|++.++=.
T Consensus        69 ~~~~~~~~~~~~~~~~~li~Aa~~agVk~~v~s  101 (233)
T PF05368_consen   69 FSVTPPSHPSELEQQKNLIDAAKAAGVKHFVPS  101 (233)
T ss_dssp             EEESSCSCCCHHHHHHHHHHHHHHHT-SEEEES
T ss_pred             EeecCcchhhhhhhhhhHHHhhhccccceEEEE
Confidence            97765   22   23567889999998888733

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>TIGR00715 precor6x_red precorrin-6x reductase

Probab=97.55  E-value=0.00036  Score=58.08  Aligned_cols=87  Identities=16%  Similarity=0.308  Sum_probs=58.7

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCccee------CCHHHHHhcccccCCccE
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM------SDLTMVLGSISQSKARAV  109 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~------~~l~ell~~~~~~~~~DV  109 (163)
                      +||.|.|++|- |+.+++.+.+ .+.++++.+.... |.....-     ..+.++.      .++.+.+.    +.++|+
T Consensus         1 m~ILvlGGT~e-gr~la~~L~~-~g~~v~~s~~t~~-~~~~~~~-----~g~~~v~~g~l~~~~l~~~l~----~~~i~~   68 (256)
T TIGR00715         1 MTVLLMGGTVD-SRAIAKGLIA-QGIEILVTVTTSE-GKHLYPI-----HQALTVHTGALDPQELREFLK----RHSIDI   68 (256)
T ss_pred             CeEEEEechHH-HHHHHHHHHh-CCCeEEEEEccCC-ccccccc-----cCCceEEECCCCHHHHHHHHH----hcCCCE
Confidence            58999999998 9999999874 5788887766432 2211110     0112221      33445554    378999


Q ss_pred             EEEccCchhH---HHHHHHHHHcCCcEE
Q 031216          110 VIDFTDASTV---YDNVKQATAFGMRSV  134 (163)
Q Consensus       110 VIDfT~p~~~---~~~~~~al~~G~~vV  134 (163)
                      |||+|+|-+.   ......|.+.|+|.+
T Consensus        69 VIDAtHPfA~~is~~a~~a~~~~~ipyl   96 (256)
T TIGR00715        69 LVDATHPFAAQITTNATAVCKELGIPYV   96 (256)
T ss_pred             EEEcCCHHHHHHHHHHHHHHHHhCCcEE
Confidence            9999999664   345578899999988

This enzyme was found to be a monomer by gel filtration.

>PLN02256 arogenate dehydrogenase

Probab=97.53  E-value=0.0018  Score=55.07  Aligned_cols=78  Identities=15%  Similarity=0.167  Sum_probs=54.2

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEc
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDf  113 (163)
                      +++||+|+| +|.||+.+++.+.+ .+.++.+ +|+... .   +..   ...++..++++++++.     ..+|+||.+
T Consensus        35 ~~~kI~IIG-~G~mG~slA~~L~~-~G~~V~~-~d~~~~-~---~~a---~~~gv~~~~~~~e~~~-----~~aDvVila   99 (304)
T PLN02256         35 RKLKIGIVG-FGNFGQFLAKTFVK-QGHTVLA-TSRSDY-S---DIA---AELGVSFFRDPDDFCE-----EHPDVVLLC   99 (304)
T ss_pred             CCCEEEEEe-eCHHHHHHHHHHHh-CCCEEEE-EECccH-H---HHH---HHcCCeeeCCHHHHhh-----CCCCEEEEe
Confidence            458999999 69999999999875 5678885 554321 1   111   1345556788888764     378999977


Q ss_pred             cCchhHHHHHHHH
Q 031216          114 TDASTVYDNVKQA  126 (163)
Q Consensus       114 T~p~~~~~~~~~a  126 (163)
                      +.|....+.+...
T Consensus       100 vp~~~~~~vl~~l  112 (304)
T PLN02256        100 TSILSTEAVLRSL  112 (304)
T ss_pred             cCHHHHHHHHHhh
Confidence            7777666666554

>PLN02712 arogenate dehydrogenase

Probab=97.49  E-value=0.0018  Score=60.51  Aligned_cols=103  Identities=17%  Similarity=0.149  Sum_probs=63.3

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEc
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDf  113 (163)
                      +++||+|+| .|.||+.+++.+.+ .+.++. ++|++.. .+  ...    ..|+..+.+++++..     ..+|+||-+
T Consensus       368 ~~~kIgIIG-lG~mG~slA~~L~~-~G~~V~-~~dr~~~-~~--~a~----~~Gv~~~~~~~el~~-----~~aDvVILa  432 (667)
T PLN02712        368 SKLKIAIVG-FGNFGQFLAKTMVK-QGHTVL-AYSRSDY-SD--EAQ----KLGVSYFSDADDLCE-----EHPEVILLC  432 (667)
T ss_pred             CCCEEEEEe-cCHHHHHHHHHHHH-CcCEEE-EEECChH-HH--HHH----HcCCeEeCCHHHHHh-----cCCCEEEEC
Confidence            568999999 79999999999874 578877 5565421 11  111    235556788888775     368999977


Q ss_pred             cCchhHHHHHHHHHH--c-CCcEEEeCCCCCHHHHHHHHHH
Q 031216          114 TDASTVYDNVKQATA--F-GMRSVVYVPHIQLETVSALSAF  151 (163)
Q Consensus       114 T~p~~~~~~~~~al~--~-G~~vVigttg~~~e~~~~L~~~  151 (163)
                      +.|....+.+.....  . .-.+|+-.+.......+.+.+.
T Consensus       433 vP~~~~~~vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~  473 (667)
T PLN02712        433 TSILSTEKVLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQH  473 (667)
T ss_pred             CChHHHHHHHHHHHHhcCCCCcEEEECCCccHHHHHHHHHh
Confidence            766666665654432  1 1235554433323333444444

>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase

Probab=97.47  E-value=0.0014  Score=54.75  Aligned_cols=104  Identities=13%  Similarity=0.129  Sum_probs=67.8

Q ss_pred             EEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEccCchhH
Q 031216           40 INGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTV  119 (163)
Q Consensus        40 VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT~p~~~  119 (163)
                      ++| +|.||..+++.+.+ .+.++. ++|++.  .....+.    ..++...++++++..      +.|+||-+..+...
T Consensus         1 ~IG-lG~mG~~mA~~L~~-~G~~V~-v~dr~~--~~~~~l~----~~g~~~~~s~~~~~~------~advVil~vp~~~~   65 (288)
T TIGR01692         1 FIG-LGNMGGPMAANLLK-AGHPVR-VFDLFP--DAVEEAV----AAGAQAAASPAEAAE------GADRVITMLPAGQH   65 (288)
T ss_pred             CCc-ccHhHHHHHHHHHh-CCCeEE-EEeCCH--HHHHHHH----HcCCeecCCHHHHHh------cCCEEEEeCCChHH
Confidence            478 79999999999874 577765 467542  2222332    345666788988875      88999855544333


Q ss_pred             -HHHH------HHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeEE
Q 031216          120 -YDNV------KQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVS  159 (163)
Q Consensus       120 -~~~~------~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv~  159 (163)
                       .+.+      ...+..|. +|+-.++.+++...++.+.+++.++-|
T Consensus        66 ~~~v~~g~~~l~~~~~~g~-~vid~st~~p~~~~~~~~~~~~~g~~~  111 (288)
T TIGR01692        66 VISVYSGDEGILPKVAKGS-LLIDCSTIDPDSARKLAELAAAHGAVF  111 (288)
T ss_pred             HHHHHcCcchHhhcCCCCC-EEEECCCCCHHHHHHHHHHHHHcCCcE
Confidence             3333      22334444 555566888888899988888776543

This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).

>PRK09414 glutamate dehydrogenase; Provisional

Probab=97.40  E-value=0.0015  Score=58.50  Aligned_cols=117  Identities=14%  Similarity=0.164  Sum_probs=79.4

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec-----CCCCcchhhhccCCCCC--Ccc--------eeCCHHHHH
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-----HSVGEDIGMVCDMEQPL--EIP--------VMSDLTMVL   98 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~-----~~~g~~~~~l~g~~~~~--gi~--------v~~~l~ell   98 (163)
                      +..||+|.| .|++|+..++.+. ..+.+|+++.|+     ...|-|+.++.......  .+.        -+.+.++++
T Consensus       231 ~g~rVaIqG-fGnVG~~~A~~L~-~~GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~i~~~~i~  308 (445)
T PRK09414        231 EGKRVVVSG-SGNVAIYAIEKAQ-QLGAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEYLEGGSPW  308 (445)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHH-HCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCeecCCcccc
Confidence            458999999 6999999999987 578999999994     24566766544321000  111        123455666


Q ss_pred             hcccccCCccEEEEccCchhH-HHHHHHHHHcCCcEEEeCC--CCCHHHHHHHHHHhhhcCeEEcC
Q 031216           99 GSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMVSTG  161 (163)
Q Consensus        99 ~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigtt--g~~~e~~~~L~~~A~~~~Vv~tg  161 (163)
                      .     .++||+|-++..+.. .+++......+..+|+|-.  .++++..+.|    .+.||++.+
T Consensus       309 ~-----~d~DVliPaAl~n~It~~~a~~i~~~~akiIvEgAN~p~t~~A~~~L----~~rGI~~vP  365 (445)
T PRK09414        309 S-----VPCDIALPCATQNELDEEDAKTLIANGVKAVAEGANMPSTPEAIEVF----LEAGVLFAP  365 (445)
T ss_pred             c-----cCCcEEEecCCcCcCCHHHHHHHHHcCCeEEEcCCCCCCCHHHHHHH----HHCCcEEEC
Confidence            5     589999988866555 5777777777999999877  3566654444    445777643

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.39  E-value=0.0016  Score=54.92  Aligned_cols=80  Identities=19%  Similarity=0.093  Sum_probs=52.1

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEccC
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT~  115 (163)
                      +||+|+| +|.||+.+++.+. ..+.++. +.+++..                   .++++++.      +.|+|| ++.
T Consensus         5 m~I~iiG-~G~~G~~lA~~l~-~~G~~V~-~~~r~~~-------------------~~~~~~~~------~advvi-~~v   55 (308)
T PRK14619          5 KTIAILG-AGAWGSTLAGLAS-ANGHRVR-VWSRRSG-------------------LSLAAVLA------DADVIV-SAV   55 (308)
T ss_pred             CEEEEEC-ccHHHHHHHHHHH-HCCCEEE-EEeCCCC-------------------CCHHHHHh------cCCEEE-EEC
Confidence            6899999 6999999999987 4577875 5565320                   36677764      899988 555


Q ss_pred             chhH-HHHHHHH----HHcCCcEEEeCCCCCHHH
Q 031216          116 ASTV-YDNVKQA----TAFGMRSVVYVPHIQLET  144 (163)
Q Consensus       116 p~~~-~~~~~~a----l~~G~~vVigttg~~~e~  144 (163)
                      |... .+.+...    +..++-+|..++|++++.
T Consensus        56 p~~~~~~v~~~l~~~~~~~~~ivi~~s~gi~~~~   89 (308)
T PRK14619         56 SMKGVRPVAEQVQALNLPPETIIVTATKGLDPET   89 (308)
T ss_pred             ChHHHHHHHHHHHHhcCCCCcEEEEeCCcccCCC
Confidence            5544 3433333    223555666565665543

>PRK08655 prephenate dehydrogenase; Provisional

Probab=97.39  E-value=0.0029  Score=56.27  Aligned_cols=104  Identities=17%  Similarity=0.197  Sum_probs=62.6

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEccC
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT~  115 (163)
                      +||+|+|++|.||+.+++.+.+ .+.++.+ ++++.  ....++..   ..++...+++++++.      .+|+||.+++
T Consensus         1 MkI~IIGG~G~mG~slA~~L~~-~G~~V~v-~~r~~--~~~~~~a~---~~gv~~~~~~~e~~~------~aDvVIlavp   67 (437)
T PRK08655          1 MKISIIGGTGGLGKWFARFLKE-KGFEVIV-TGRDP--KKGKEVAK---ELGVEYANDNIDAAK------DADIVIISVP   67 (437)
T ss_pred             CEEEEEecCCHHHHHHHHHHHH-CCCEEEE-EECCh--HHHHHHHH---HcCCeeccCHHHHhc------cCCEEEEecC
Confidence            4899998679999999999874 5677654 45432  11112211   335555677877764      8899997776


Q ss_pred             chhHHHHHHHHHH---cCCcEEEeCCCCCHHHHHHHHHHhh
Q 031216          116 ASTVYDNVKQATA---FGMRSVVYVPHIQLETVSALSAFCD  153 (163)
Q Consensus       116 p~~~~~~~~~al~---~G~~vVigttg~~~e~~~~L~~~A~  153 (163)
                      ++...+.+.....   .|. +|+-.+.......+.+.+...
T Consensus        68 ~~~~~~vl~~l~~~l~~~~-iViDvsSvK~~~~~~l~~~~~  107 (437)
T PRK08655         68 INVTEDVIKEVAPHVKEGS-LLMDVTSVKERPVEAMEEYAP  107 (437)
T ss_pred             HHHHHHHHHHHHhhCCCCC-EEEEcccccHHHHHHHHHhcC
Confidence            6655555544433   333 444344433445556665543

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.39  E-value=0.0028  Score=53.55  Aligned_cols=99  Identities=18%  Similarity=0.211  Sum_probs=60.3

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC--------CcchhhhccCCCCCCcceeCCHHHHHhcccccCCc
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV--------GEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKAR  107 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~--------g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~  107 (163)
                      |||+|+|+ |.||..++..+.+ .+.++. +++++..        +.....+.+...+.++.+++++++.+.     ..+
T Consensus         1 MkI~IiGa-Ga~G~ala~~L~~-~g~~V~-l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-----~~~   72 (326)
T PRK14620          1 MKISILGA-GSFGTAIAIALSS-KKISVN-LWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLS-----DNA   72 (326)
T ss_pred             CEEEEECc-CHHHHHHHHHHHH-CCCeEE-EEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHh-----CCC
Confidence            48999995 9999999998874 567765 5664310        000000111111234567788888764     378


Q ss_pred             cEEEEccCchhHHHHHHHHHH----cCCcEEEeCCCCCH
Q 031216          108 AVVIDFTDASTVYDNVKQATA----FGMRSVVYVPHIQL  142 (163)
Q Consensus       108 DVVIDfT~p~~~~~~~~~al~----~G~~vVigttg~~~  142 (163)
                      |++|.++.+....+.+.....    .+..+|+-+-|+..
T Consensus        73 Dliiiavks~~~~~~l~~l~~~~l~~~~~vv~~~nGi~~  111 (326)
T PRK14620         73 TCIILAVPTQQLRTICQQLQDCHLKKNTPILICSKGIEK  111 (326)
T ss_pred             CEEEEEeCHHHHHHHHHHHHHhcCCCCCEEEEEEcCeeC
Confidence            999966666655555554433    35567776667743

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=97.37  E-value=0.00072  Score=51.59  Aligned_cols=83  Identities=24%  Similarity=0.283  Sum_probs=51.1

Q ss_pred             EEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcce--eCCH---HHHHhcccccCCccEEEE
Q 031216           38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV--MSDL---TMVLGSISQSKARAVVID  112 (163)
Q Consensus        38 V~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v--~~~l---~ell~~~~~~~~~DVVID  112 (163)
                      |.|+||+|.+|+.+++.+.+. +.++.+++.+..   +..+..    ...+..  +.++   .+++      .++|+||+
T Consensus         1 I~V~GatG~vG~~l~~~L~~~-~~~V~~~~R~~~---~~~~~~----~~~~~~~d~~d~~~~~~al------~~~d~vi~   66 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRR-GHEVTALVRSPS---KAEDSP----GVEIIQGDLFDPDSVKAAL------KGADAVIH   66 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHT-TSEEEEEESSGG---GHHHCT----TEEEEESCTTCHHHHHHHH------TTSSEEEE
T ss_pred             eEEECCCChHHHHHHHHHHHC-CCEEEEEecCch---hccccc----ccccceeeehhhhhhhhhh------hhcchhhh
Confidence            789999999999999999865 599999887532   111110    111111  1333   4455      38999997


Q ss_pred             ccCc----h-hHHHHHHHHHHcCCcEE
Q 031216          113 FTDA----S-TVYDNVKQATAFGMRSV  134 (163)
Q Consensus       113 fT~p----~-~~~~~~~~al~~G~~vV  134 (163)
                      +..|    . .....+..+.++|++-+
T Consensus        67 ~~~~~~~~~~~~~~~~~a~~~~~~~~~   93 (183)
T PF13460_consen   67 AAGPPPKDVDAAKNIIEAAKKAGVKRV   93 (183)
T ss_dssp             CCHSTTTHHHHHHHHHHHHHHTTSSEE
T ss_pred             hhhhhcccccccccccccccccccccc
Confidence            6532    1 22344556667786444

...

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=97.36  E-value=0.0023  Score=54.24  Aligned_cols=109  Identities=16%  Similarity=0.125  Sum_probs=72.6

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEccC
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT~  115 (163)
                      +||+.+| +|.||.-+++.+. ..++++. +.|++..  .+.+.+   ...|.....++.++..      ..|+||-+-.
T Consensus         1 ~kIafIG-LG~MG~pmA~~L~-~aG~~v~-v~~r~~~--ka~~~~---~~~Ga~~a~s~~eaa~------~aDvVitmv~   66 (286)
T COG2084           1 MKIAFIG-LGIMGSPMAANLL-KAGHEVT-VYNRTPE--KAAELL---AAAGATVAASPAEAAA------EADVVITMLP   66 (286)
T ss_pred             CeEEEEc-CchhhHHHHHHHH-HCCCEEE-EEeCChh--hhhHHH---HHcCCcccCCHHHHHH------hCCEEEEecC
Confidence            4899999 8999999999998 5788877 5675431  112222   1346777888877764      8999885443


Q ss_pred             chhHHHHHHH----HH---HcCCcEEEeCCCCCHHHHHHHHHHhhhcCeEE
Q 031216          116 ASTVYDNVKQ----AT---AFGMRSVVYVPHIQLETVSALSAFCDKASMVS  159 (163)
Q Consensus       116 p~~~~~~~~~----al---~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv~  159 (163)
                      .....+.+..    .+   +.|.-+|- -+..+++...++.+.+++.|+-|
T Consensus        67 ~~~~V~~V~~g~~g~~~~~~~G~i~ID-mSTisp~~a~~~a~~~~~~G~~~  116 (286)
T COG2084          67 DDAAVRAVLFGENGLLEGLKPGAIVID-MSTISPETARELAAALAAKGLEF  116 (286)
T ss_pred             CHHHHHHHHhCccchhhcCCCCCEEEE-CCCCCHHHHHHHHHHHHhcCCcE
Confidence            3333333321    22   34666554 34567888999999999887654

>PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase

Probab=97.35  E-value=0.0025  Score=57.11  Aligned_cols=119  Identities=9%  Similarity=0.073  Sum_probs=72.2

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCC-cEEEEEEecCCCC---cchhh----------------hcc-CC-CCCCccee
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARG-MEVAGAIDSHSVG---EDIGM----------------VCD-ME-QPLEIPVM   91 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~-~eLvgvid~~~~g---~~~~~----------------l~g-~~-~~~gi~v~   91 (163)
                      .+.||+|.|++|-+|+..++.+.++|+ ++++++.......   +.+.+                +-. +. ...++.++
T Consensus        56 ~~KkI~ILGSTGSIGtqtLdVI~~~pd~f~vvaLaag~Ni~lL~~q~~~f~p~~v~v~d~~~~~~l~~~l~~~~~~~~vl  135 (454)
T PLN02696         56 GPKPISLLGSTGSIGTQTLDIVAENPDKFKVVALAAGSNVTLLADQVRKFKPKLVAVRNESLVDELKEALADLDDKPEII  135 (454)
T ss_pred             CccEEEEecCCcHhhHHHHHHHHhCccccEEEEEECCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHhhcCCCCCcEEE
Confidence            357999999999999999999988765 8999887743110   00000                000 00 00022333


Q ss_pred             ---CCHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcC
Q 031216           92 ---SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKAS  156 (163)
Q Consensus        92 ---~~l~ell~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~  156 (163)
                         +++.++..    ..++|+|+..-.=.....-...|+++||+|....-+.=-.-.+.|.+++++.+
T Consensus       136 ~G~egl~~la~----~~evDiVV~AIvG~aGL~pTl~AIkaGK~VALANKESLV~aG~lI~~~ak~~~  199 (454)
T PLN02696        136 PGEEGIVEVAR----HPEAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAKKHG  199 (454)
T ss_pred             ECHHHHHHHHc----CCCCCEEEEeCccccchHHHHHHHHCCCcEEEecHHHHHhhHHHHHHHHHHcC
Confidence               34444444    36789998655443345555889999999988654332333445666666654

>PLN02350 phosphogluconate dehydrogenase (decarboxylating)

Probab=97.35  E-value=0.0027  Score=57.48  Aligned_cols=117  Identities=9%  Similarity=0.079  Sum_probs=71.7

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCC---cceeCCHHHHHhcccccCCccEE
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE---IPVMSDLTMVLGSISQSKARAVV  110 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~g---i~v~~~l~ell~~~~~~~~~DVV  110 (163)
                      .+.+|+++| +|.||+.+++.+. ..+++|+ +.|++.  ....++.......|   +..+++++++.+.+   .++|+|
T Consensus         5 ~~~~IG~IG-LG~MG~~mA~nL~-~~G~~V~-V~NRt~--~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l---~~~dvI   76 (493)
T PLN02350          5 ALSRIGLAG-LAVMGQNLALNIA-EKGFPIS-VYNRTT--SKVDETVERAKKEGNLPLYGFKDPEDFVLSI---QKPRSV   76 (493)
T ss_pred             CCCCEEEEe-eHHHHHHHHHHHH-hCCCeEE-EECCCH--HHHHHHHHhhhhcCCcccccCCCHHHHHhcC---CCCCEE
Confidence            356899999 8999999999998 4688887 678643  22233321000112   23568999987531   359998


Q ss_pred             EEccCch--hHHHH---HHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeEEc
Q 031216          111 IDFTDAS--TVYDN---VKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVST  160 (163)
Q Consensus       111 IDfT~p~--~~~~~---~~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv~t  160 (163)
                      |- ..|+  .+.+.   +...++.|.-+|- .+..++++..++.+.+++.|+-|-
T Consensus        77 i~-~v~~~~aV~~Vi~gl~~~l~~G~iiID-~sT~~~~~t~~~~~~l~~~Gi~fl  129 (493)
T PLN02350         77 II-LVKAGAPVDQTIKALSEYMEPGDCIID-GGNEWYENTERRIKEAAEKGLLYL  129 (493)
T ss_pred             EE-ECCCcHHHHHHHHHHHhhcCCCCEEEE-CCCCCHHHHHHHHHHHHHcCCeEE
Confidence            84 4333  22333   3445566754444 444446667777777777776553

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=97.31  E-value=0.0053  Score=51.58  Aligned_cols=101  Identities=16%  Similarity=0.177  Sum_probs=58.0

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCc--EEEEEEecCCCCcchhhhccCCCCCCc--ceeCCHHHHHhcccccCCccEE
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGM--EVAGAIDSHSVGEDIGMVCDMEQPLEI--PVMSDLTMVLGSISQSKARAVV  110 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~--eLvgvid~~~~g~~~~~l~g~~~~~gi--~v~~~l~ell~~~~~~~~~DVV  110 (163)
                      ..||+|+| +|.||..+++.+.+. +.  ++. ++|++..  ......    ..++  .+..++++++.      ++|+|
T Consensus         6 ~~~I~IIG-~G~mG~sla~~l~~~-g~~~~V~-~~dr~~~--~~~~a~----~~g~~~~~~~~~~~~~~------~aDvV   70 (307)
T PRK07502          6 FDRVALIG-IGLIGSSLARAIRRL-GLAGEIV-GADRSAE--TRARAR----ELGLGDRVTTSAAEAVK------GADLV   70 (307)
T ss_pred             CcEEEEEe-eCHHHHHHHHHHHhc-CCCcEEE-EEECCHH--HHHHHH----hCCCCceecCCHHHHhc------CCCEE
Confidence            36899999 699999999998754 43  444 6675421  111111    1221  23467777764      89999


Q ss_pred             EEccCchhHHHHHHH---HHHcCCcEEEeCCCCCHHHHHHHHHH
Q 031216          111 IDFTDASTVYDNVKQ---ATAFGMRSVVYVPHIQLETVSALSAF  151 (163)
Q Consensus       111 IDfT~p~~~~~~~~~---al~~G~~vVigttg~~~e~~~~L~~~  151 (163)
                      |.++.+....+.+..   ++..|. +|+-..+...+..+.+.+.
T Consensus        71 iiavp~~~~~~v~~~l~~~l~~~~-iv~dvgs~k~~~~~~~~~~  113 (307)
T PRK07502         71 ILCVPVGASGAVAAEIAPHLKPGA-IVTDVGSVKASVIAAMAPH  113 (307)
T ss_pred             EECCCHHHHHHHHHHHHhhCCCCC-EEEeCccchHHHHHHHHHh
Confidence            977766554444433   333444 4443444444544555444

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=97.29  E-value=0.00089  Score=50.08  Aligned_cols=109  Identities=15%  Similarity=0.026  Sum_probs=61.2

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCc----ceeCCHHHHHhcccccCCccE
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI----PVMSDLTMVLGSISQSKARAV  109 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi----~v~~~l~ell~~~~~~~~~DV  109 (163)
                      +..||+|+| +|.||+.+++.+.+.. ..-+.++|++.  .+..++..   ..+.    ..+.++++++      .++|+
T Consensus        18 ~~~~i~iiG-~G~~g~~~a~~l~~~g-~~~v~v~~r~~--~~~~~~~~---~~~~~~~~~~~~~~~~~~------~~~Dv   84 (155)
T cd01065          18 KGKKVLILG-AGGAARAVAYALAELG-AAKIVIVNRTL--EKAKALAE---RFGELGIAIAYLDLEELL------AEADL   84 (155)
T ss_pred             CCCEEEEEC-CcHHHHHHHHHHHHCC-CCEEEEEcCCH--HHHHHHHH---HHhhcccceeecchhhcc------ccCCE
Confidence            347899999 5999999999998654 44455667542  11122211   1111    1245666665      38999


Q ss_pred             EEEccCchhH----HHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeE
Q 031216          110 VIDFTDASTV----YDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMV  158 (163)
Q Consensus       110 VIDfT~p~~~----~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv  158 (163)
                      ||.++.+...    .......++.|.-++--.+ . +... .|.+.+++.|+.
T Consensus        85 vi~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~~-~-~~~~-~l~~~~~~~g~~  134 (155)
T cd01065          85 IINTTPVGMKPGDELPLPPSLLKPGGVVYDVVY-N-PLET-PLLKEARALGAK  134 (155)
T ss_pred             EEeCcCCCCCCCCCCCCCHHHcCCCCEEEEcCc-C-CCCC-HHHHHHHHCCCc
Confidence            9977765543    1222344566665442211 1 1111 566667776653

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PRK08289 glyceraldehyde-3-phosphate dehydrogenase; Reviewed

Probab=97.29  E-value=0.0016  Score=58.57  Aligned_cols=35  Identities=17%  Similarity=0.306  Sum_probs=30.5

Q ss_pred             CCCeeEEEEcCCCHHHHHHHHHHHhc----CCcEEEEEEe
Q 031216           33 QSNIKVIINGAVKEIGRAAVIAVTKA----RGMEVAGAID   68 (163)
Q Consensus        33 ~~~irV~VvGa~G~mG~~i~~~i~~~----~~~eLvgvid   68 (163)
                      ..+.||+|.| .||+||.++|.+.+.    ++++|+++.+
T Consensus       125 ~~~~~V~InG-FGRIGR~v~R~~~~~~~~~~~l~lvAIn~  163 (477)
T PRK08289        125 IEPRDVVLYG-FGRIGRLLARLLIEKTGGGNGLRLRAIVV  163 (477)
T ss_pred             CCCceEEEEC-CCHHHHHHHHHHHhccCCCCCeEEEEEec
Confidence            4578999999 799999999998766    6899999975

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=97.26  E-value=0.0041  Score=54.51  Aligned_cols=68  Identities=18%  Similarity=0.289  Sum_probs=43.0

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhc-cC--------C------CCCC-cceeCCHHHHHh
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC-DM--------E------QPLE-IPVMSDLTMVLG   99 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~-g~--------~------~~~g-i~v~~~l~ell~   99 (163)
                      +||+|+| +|+||..++..+. ..|.++.+ +|++.  ..+..+. |.        .      ...+ +..++++++++.
T Consensus         1 mkI~vIG-lG~~G~~lA~~La-~~G~~V~~-~d~~~--~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~   75 (411)
T TIGR03026         1 MKIAVIG-LGYVGLPLAALLA-DLGHEVTG-VDIDQ--EKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIR   75 (411)
T ss_pred             CEEEEEC-CCchhHHHHHHHH-hcCCeEEE-EECCH--HHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHh
Confidence            4899999 7999999999987 46888775 56431  1111111 00        0      0012 455678888774


Q ss_pred             cccccCCccEEEEcc
Q 031216          100 SISQSKARAVVIDFT  114 (163)
Q Consensus       100 ~~~~~~~~DVVIDfT  114 (163)
                            ++|+||.+.
T Consensus        76 ------~advvii~v   84 (411)
T TIGR03026        76 ------DADVIIICV   84 (411)
T ss_pred             ------hCCEEEEEe
Confidence                  899988554

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1

Probab=97.26  E-value=0.0012  Score=55.18  Aligned_cols=79  Identities=22%  Similarity=0.320  Sum_probs=50.3

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc-
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT-  114 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT-  114 (163)
                      |||.|+|++|.+|+.+.+.+.+ .+.++++. ++..  -|            +.-.+.+.+.+..    .+||+||.+. 
T Consensus         1 MriLI~GasG~lG~~l~~~l~~-~~~~v~~~-~r~~--~d------------l~d~~~~~~~~~~----~~pd~Vin~aa   60 (286)
T PF04321_consen    1 MRILITGASGFLGSALARALKE-RGYEVIAT-SRSD--LD------------LTDPEAVAKLLEA----FKPDVVINCAA   60 (286)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTT-TSEEEEEE-STTC--S-------------TTSHHHHHHHHHH----H--SEEEE---
T ss_pred             CEEEEECCCCHHHHHHHHHHhh-CCCEEEEe-Cchh--cC------------CCCHHHHHHHHHH----hCCCeEeccce
Confidence            7999999999999999999874 78888876 4321  11            1111344556653    5899999874 


Q ss_pred             ---------Cchh--------HHHHHHHHHHcCCcEE
Q 031216          115 ---------DAST--------VYDNVKQATAFGMRSV  134 (163)
Q Consensus       115 ---------~p~~--------~~~~~~~al~~G~~vV  134 (163)
                               .|+.        ....++.|.+.|.++|
T Consensus        61 ~~~~~~ce~~p~~a~~iN~~~~~~la~~~~~~~~~li   97 (286)
T PF04321_consen   61 YTNVDACEKNPEEAYAINVDATKNLAEACKERGARLI   97 (286)
T ss_dssp             ---HHHHHHSHHHHHHHHTHHHHHHHHHHHHCT-EEE
T ss_pred             eecHHhhhhChhhhHHHhhHHHHHHHHHHHHcCCcEE
Confidence                     2322        2245678888999987

1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.

>KOG4354 consensus N-acetyl-gamma-glutamyl-phosphate reductase [Amino acid transport and metabolism]

Probab=97.25  E-value=0.00098  Score=55.80  Aligned_cols=100  Identities=20%  Similarity=0.220  Sum_probs=64.1

Q ss_pred             CCCCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCH---HHHHhcccccC
Q 031216           29 TNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDL---TMVLGSISQSK  105 (163)
Q Consensus        29 ~~~~~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l---~ell~~~~~~~  105 (163)
                      .--+.+++||++.||.|+.|+.+++.++.+|-+|+.-+..+...|+.+..+.    +..+ .|.|+   |...-  +...
T Consensus        13 ~~~~~k~~rv~LlGArGYTGknlv~Lin~HPylevthvssrel~Gqkl~~yt----k~ei-qy~~lst~D~~kl--ee~~   85 (340)
T KOG4354|consen   13 SVKPEKDIRVGLLGARGYTGKNLVRLINNHPYLEVTHVSSRELAGQKLEVYT----KLEI-QYADLSTVDAVKL--EEPH   85 (340)
T ss_pred             ccccCCCceEEEEeccccchhhHHHHhcCCCceEEEeeehhhhcCCcccCcc----hhhe-eecccchhhHHHh--hcCC
Confidence            3445578999999999999999999999999999998887777777655443    2222 23222   22221  1124


Q ss_pred             CccEEEEccCchhHH-HHHHHH-HHcCCcEEEe
Q 031216          106 ARAVVIDFTDASTVY-DNVKQA-TAFGMRSVVY  136 (163)
Q Consensus       106 ~~DVVIDfT~p~~~~-~~~~~a-l~~G~~vVig  136 (163)
                      ..|.++ +..|..+. +.+... ...|+..+|.
T Consensus        86 avd~wv-maLPn~vckpfv~~~~s~~gks~iid  117 (340)
T KOG4354|consen   86 AVDHWV-MALPNQVCKPFVSLTESSDGKSRIID  117 (340)
T ss_pred             ceeeee-eecchhhHHHHHHHHhhcCCceeeee
Confidence            556666 77887764 343322 3345655543

>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating

Probab=97.25  E-value=0.0035  Score=56.35  Aligned_cols=114  Identities=10%  Similarity=0.034  Sum_probs=65.5

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccC-CCCCCcceeCCHHHHHhcccccCCccEEEEccC
Q 031216           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDM-EQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (163)
Q Consensus        37 rV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~-~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT~  115 (163)
                      +|+++| +|.||+.+++.+.+ .+.++. +.|++.  .....+... ....++..+++++++.+.+   .++|+|+-+..
T Consensus         1 ~IG~IG-LG~MG~~mA~nL~~-~G~~V~-v~drt~--~~~~~l~~~~~~g~~~~~~~s~~e~v~~l---~~~dvIil~v~   72 (467)
T TIGR00873         1 DIGVIG-LAVMGSNLALNMAD-HGFTVS-VYNRTP--EKTDEFLAEHAKGKKIVGAYSIEEFVQSL---ERPRKIMLMVK   72 (467)
T ss_pred             CEEEEe-eHHHHHHHHHHHHh-cCCeEE-EEeCCH--HHHHHHHhhccCCCCceecCCHHHHHhhc---CCCCEEEEECC
Confidence            489999 79999999999975 578866 567542  122232211 0011245567888876431   36898885555


Q ss_pred             c-hhHHHHH---HHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeEE
Q 031216          116 A-STVYDNV---KQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVS  159 (163)
Q Consensus       116 p-~~~~~~~---~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv~  159 (163)
                      | +.+.+.+   ...++.|.-+|-+++....+... +.+..++.++-|
T Consensus        73 ~~~~v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~-~~~~l~~~gi~f  119 (467)
T TIGR00873        73 AGAPVDAVINQLLPLLEKGDIIIDGGNSHYPDTER-RYKELKAKGILF  119 (467)
T ss_pred             CcHHHHHHHHHHHhhCCCCCEEEECCCcCHHHHHH-HHHHHHhcCCEE
Confidence            4 2333333   34455676565555555444433 344455556655

This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.

>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.25  E-value=0.0032  Score=54.99  Aligned_cols=104  Identities=19%  Similarity=0.162  Sum_probs=62.4

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcC------CcEEEEEEecCC-CCcc-----------hhhhccCCCCCCcceeCCHH
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKAR------GMEVAGAIDSHS-VGED-----------IGMVCDMEQPLEIPVMSDLT   95 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~------~~eLvgvid~~~-~g~~-----------~~~l~g~~~~~gi~v~~~l~   95 (163)
                      +++||+|+| +|.+|.+++..+.+..      +.++.--..+.. .+++           ..-+.+..-+.++..++|++
T Consensus        10 ~~~ki~ViG-aG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~   88 (365)
T PTZ00345         10 GPLKVSVIG-SGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLK   88 (365)
T ss_pred             CCCeEEEEC-CCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHH
Confidence            458999999 5999999999998653      134332222221 1111           11112222234566688999


Q ss_pred             HHHhcccccCCccEEEEccCchhHHHHHHHHH-----HcCCcEEEeCCCCCHHH
Q 031216           96 MVLGSISQSKARAVVIDFTDASTVYDNVKQAT-----AFGMRSVVYVPHIQLET  144 (163)
Q Consensus        96 ell~~~~~~~~~DVVIDfT~p~~~~~~~~~al-----~~G~~vVigttg~~~e~  144 (163)
                      ++++      ..|+||-..+|....+.+....     ..+..+|+.+.|++.++
T Consensus        89 eav~------~aDiIvlAVPsq~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~~t  136 (365)
T PTZ00345         89 EAVE------DADLLIFVIPHQFLESVLSQIKENNNLKKHARAISLTKGIIVEN  136 (365)
T ss_pred             HHHh------cCCEEEEEcChHHHHHHHHHhccccccCCCCEEEEEeCCcccCC
Confidence            8885      8999886666666655555443     33446777777876443

>PRK06046 alanine dehydrogenase; Validated

Probab=97.23  E-value=0.00047  Score=58.91  Aligned_cols=90  Identities=14%  Similarity=0.137  Sum_probs=60.9

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhcc-CCCCCC--cceeCCHHHHHhcccccCCccEEE
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCD-MEQPLE--IPVMSDLTMVLGSISQSKARAVVI  111 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g-~~~~~g--i~v~~~l~ell~~~~~~~~~DVVI  111 (163)
                      ..+++|+| +|.+|+.+++.+...++++.+.++|+...  ....+.. +....+  +.+++|+++++      . +|+|+
T Consensus       129 ~~~vgiiG-~G~qa~~h~~al~~~~~i~~v~v~~r~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~l------~-aDiVv  198 (326)
T PRK06046        129 SKVVGIIG-AGNQARTQLLALSEVFDLEEVRVYDRTKS--SAEKFVERMSSVVGCDVTVAEDIEEAC------D-CDILV  198 (326)
T ss_pred             CCEEEEEC-CcHHHHHHHHHHHhhCCceEEEEECCCHH--HHHHHHHHHHhhcCceEEEeCCHHHHh------h-CCEEE
Confidence            46899999 69999999999988899999999997531  1122211 001123  45678999886      3 89999


Q ss_pred             EccCchhHHHHH-HHHHHcCCcEE-Ee
Q 031216          112 DFTDASTVYDNV-KQATAFGMRSV-VY  136 (163)
Q Consensus       112 DfT~p~~~~~~~-~~al~~G~~vV-ig  136 (163)
                      .+|+. .. +.+ ...++.|.||. +|
T Consensus       199 ~aTps-~~-P~~~~~~l~~g~hV~~iG  223 (326)
T PRK06046        199 TTTPS-RK-PVVKAEWIKEGTHINAIG  223 (326)
T ss_pred             EecCC-CC-cEecHHHcCCCCEEEecC
Confidence            66643 22 222 33468899976 55

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=97.23  E-value=0.003  Score=56.86  Aligned_cols=116  Identities=12%  Similarity=0.133  Sum_probs=70.8

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCC--cceeCCHHHHHhcccccCCccEEEE
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE--IPVMSDLTMVLGSISQSKARAVVID  112 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~g--i~v~~~l~ell~~~~~~~~~DVVID  112 (163)
                      |.+|+|+| +|.||+.+++.+. ..+.++. +.|++..  ...++.......+  +..+++++++...+   .++|+|+-
T Consensus         1 ~~~IgvIG-LG~MG~~lA~nL~-~~G~~V~-v~dr~~~--~~~~l~~~~~~~g~~i~~~~s~~e~v~~l---~~~d~Iil   72 (470)
T PTZ00142          1 MSDIGLIG-LAVMGQNLALNIA-SRGFKIS-VYNRTYE--KTEEFVKKAKEGNTRVKGYHTLEELVNSL---KKPRKVIL   72 (470)
T ss_pred             CCEEEEEe-EhHHHHHHHHHHH-HCCCeEE-EEeCCHH--HHHHHHHhhhhcCCcceecCCHHHHHhcC---CCCCEEEE
Confidence            46899999 7999999999997 4678766 5776431  1222221000113  34578999988531   36898776


Q ss_pred             ccCch-hHHHH---HHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeEE
Q 031216          113 FTDAS-TVYDN---VKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVS  159 (163)
Q Consensus       113 fT~p~-~~~~~---~~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv~  159 (163)
                      +-.|. .+.+.   +...++.|.-+|-++++...+ ..++.+..++.|+-|
T Consensus        73 ~v~~~~~v~~vi~~l~~~L~~g~iIID~gn~~~~d-t~~r~~~l~~~Gi~f  122 (470)
T PTZ00142         73 LIKAGEAVDETIDNLLPLLEKGDIIIDGGNEWYLN-TERRIKRCEEKGILY  122 (470)
T ss_pred             EeCChHHHHHHHHHHHhhCCCCCEEEECCCCCHHH-HHHHHHHHHHcCCeE
Confidence            64443 33333   344566777777766666444 445556666667665

>COG1810 Uncharacterized protein conserved in archaea [Function unknown]

Probab=97.23  E-value=0.0073  Score=49.38  Aligned_cols=108  Identities=11%  Similarity=0.162  Sum_probs=77.7

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhc-CCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEc
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~-~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDf  113 (163)
                      ||||+|+. .|.-|+..++.+..+ =.-+++++.+.+.   .           -....+.+++.|..+   .++|++|-+
T Consensus         1 ~mki~vlt-~g~yG~R~~~nl~~~~f~~~~v~v~~~Pe---~-----------~~~fie~P~~~Lp~~---~e~Di~va~   62 (224)
T COG1810           1 MMKILVLT-DGEYGKRAVNNLACKGFKNQFVAVKEYPE---E-----------LPDFIEEPEDLLPKL---PEADIVVAY   62 (224)
T ss_pred             CcEEEEEe-eccchHHHHHhHhhhccccceEEEEeccc---c-----------ccchhhCHHHhcCCC---CCCCEEEEe
Confidence            78999999 799999999988743 2356777666421   0           011235677777632   578988877


Q ss_pred             c-CchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeEEc
Q 031216          114 T-DASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVST  160 (163)
Q Consensus       114 T-~p~~~~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv~t  160 (163)
                      + +|+-.....+.+.+.|+..||--.+-+.-..++|++.+.+.|+.++
T Consensus        63 ~lHPDl~~~L~e~~~~~~~~alIvp~~~~~g~rkqL~~~~~~~g~e~~  110 (224)
T COG1810          63 GLHPDLLLALPEKAAEGGVKALIVPAEPPEGLRKQLKEFCEELGVEFE  110 (224)
T ss_pred             ccCccHHHHHHHHHHhCCccEEEEecCCChhHHHHHHHHhhhcceeee
Confidence            6 7888899999888999777764434445667889999998888764

>TIGR01534 GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, type I

Probab=97.23  E-value=0.0016  Score=56.19  Aligned_cols=96  Identities=24%  Similarity=0.200  Sum_probs=62.5

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhc--CCcEEEEEEecC-------------CCCcchhhh-------ccCCCCC-Cccee--
Q 031216           37 KVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDSH-------------SVGEDIGMV-------CDMEQPL-EIPVM--   91 (163)
Q Consensus        37 rV~VvGa~G~mG~~i~~~i~~~--~~~eLvgvid~~-------------~~g~~~~~l-------~g~~~~~-gi~v~--   91 (163)
                      ||||.| .||+||.+.|.+.+.  ++++++++-|..             ..|+--.++       +-+. .. .+.++  
T Consensus         1 ~i~ING-fGRIGr~~~r~~~~~~~~~~~ivaind~~~~~~~ayll~yDS~hg~~~~~v~~~~~~~l~i~-g~~~i~v~~~   78 (327)
T TIGR01534         1 KVGING-FGRIGRLVLRAILEKQGLDLEVVAINDLTDLEYLAYLLKYDSVHGRFEGEVTADEDKGLVVN-GKFVIVVASE   78 (327)
T ss_pred             CEEEEc-cChHHHHHHHHHHhccCCceEEEEEecCCCHHHHHHHhcccCCCCCCCCcEEecCCceEEEC-CeEEEEEEec
Confidence            799999 799999999998766  589999998731             112110111       0000 11 23333  


Q ss_pred             CCHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeC
Q 031216           92 SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV  137 (163)
Q Consensus        92 ~~l~ell~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigt  137 (163)
                      .+++++-..   +..+|+|+++|-.....+.+...++.|...|+=+
T Consensus        79 ~dp~~~~w~---~~gvDiVle~tG~~~s~~~a~~hl~~Gak~V~iS  121 (327)
T TIGR01534        79 RDPSDLPWK---ALGVDIVIECTGKFRDKEKLEGHLEAGAKKVLIS  121 (327)
T ss_pred             CCcccCchh---hcCCCEEEEccchhhcHHHHHHHhhCCCEEEEeC
Confidence            255554331   2379999988877777888999999997666533

The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model.

>CHL00194 ycf39 Ycf39; Provisional

Probab=97.19  E-value=0.0019  Score=54.08  Aligned_cols=33  Identities=21%  Similarity=0.408  Sum_probs=28.6

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~   69 (163)
                      |||.|+||+|.+|+.+++.+.+ .+.++.++..+
T Consensus         1 MkIlVtGatG~iG~~lv~~Ll~-~g~~V~~l~R~   33 (317)
T CHL00194          1 MSLLVIGATGTLGRQIVRQALD-EGYQVRCLVRN   33 (317)
T ss_pred             CEEEEECCCcHHHHHHHHHHHH-CCCeEEEEEcC
Confidence            4899999999999999999885 58998887654

>KOG1255 consensus Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]

Probab=97.18  E-value=0.0023  Score=53.41  Aligned_cols=104  Identities=14%  Similarity=0.217  Sum_probs=84.4

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEc
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDf  113 (163)
                      +..||.+-|.+|+-|.-|.+... .=+.++||.+.+...|.         ..+|.|||.+..|+..+    .++|+-+.|
T Consensus        37 k~TkVi~QGfTGKqgTFHs~q~~-eYgTk~VgG~~pkK~Gt---------~HLG~PVF~sV~eA~~~----t~a~AsvIy  102 (329)
T KOG1255|consen   37 KDTKVICQGFTGKQGTFHSQQAL-EYGTKVVGGVNPKKGGT---------THLGLPVFNSVAEAKKE----TGADASVIY  102 (329)
T ss_pred             CCceEEEecccCCccceeHHHHH-HhCCceeeccCCCcCcc---------cccCchhhhhHHHHHHh----hCCCceEEE
Confidence            34799999999999999999887 45899999998765543         26788999999999985    899987779


Q ss_pred             cCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHH
Q 031216          114 TDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAF  151 (163)
Q Consensus       114 T~p~~~~~~~~~al~~G~~vVigtt-g~~~e~~~~L~~~  151 (163)
                      -+|..+..-+..++++-+++++.-| |....+--++...
T Consensus       103 VPpp~Aa~aI~eaieaEipLiVcITEGIPQhDMvrvk~~  141 (329)
T KOG1255|consen  103 VPPPFAAAAIEEAIEAEIPLIVCITEGIPQHDMVRVKHA  141 (329)
T ss_pred             eCChhHHHHHHHHHhccCCEEEEecCCCchhhHHHHHHH
Confidence            9999999999999999999998777 6655444444443

>PTZ00353 glycosomal glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=97.16  E-value=0.0018  Score=56.12  Aligned_cols=33  Identities=30%  Similarity=0.353  Sum_probs=30.1

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid   68 (163)
                      ++||||.| .||+||.+.|.+.+.+++|+|++-|
T Consensus         2 ~~kv~ING-fGRIGR~v~R~~~~~~~~~ivaiNd   34 (342)
T PTZ00353          2 PITVGING-FGPVGKAVLFASLTDPLVTVVAVND   34 (342)
T ss_pred             CeEEEEEC-CChHHHHHHHHHHhcCCcEEEEecC
Confidence            37999999 7999999999988788999999987

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=97.13  E-value=0.0045  Score=51.47  Aligned_cols=99  Identities=18%  Similarity=0.143  Sum_probs=56.6

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCC-cc-eeCCHHHHHhcccccCCccEEEEc
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE-IP-VMSDLTMVLGSISQSKARAVVIDF  113 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~g-i~-v~~~l~ell~~~~~~~~~DVVIDf  113 (163)
                      +||+|+| +|.||..+++.+.+ .+.++. ++|++..  ......    ..+ +. ..++.+ .+      .++|+||.+
T Consensus         1 m~I~IIG-~G~mG~sla~~L~~-~g~~V~-~~d~~~~--~~~~a~----~~g~~~~~~~~~~-~~------~~aDlVila   64 (279)
T PRK07417          1 MKIGIVG-LGLIGGSLGLDLRS-LGHTVY-GVSRRES--TCERAI----ERGLVDEASTDLS-LL------KDCDLVILA   64 (279)
T ss_pred             CeEEEEe-ecHHHHHHHHHHHH-CCCEEE-EEECCHH--HHHHHH----HCCCcccccCCHh-Hh------cCCCEEEEc
Confidence            4899999 79999999999875 477765 4565321  111111    112 11 223443 44      389999977


Q ss_pred             cCchhHHHHHHHHHHc--CCcEEEeCCCCCHHHHHHHHH
Q 031216          114 TDASTVYDNVKQATAF--GMRSVVYVPHIQLETVSALSA  150 (163)
Q Consensus       114 T~p~~~~~~~~~al~~--G~~vVigttg~~~e~~~~L~~  150 (163)
                      +++....+.+......  ...+|+-+.+...+..+.+.+
T Consensus        65 vp~~~~~~~~~~l~~~l~~~~ii~d~~Svk~~~~~~~~~  103 (279)
T PRK07417         65 LPIGLLLPPSEQLIPALPPEAIVTDVGSVKAPIVEAWEK  103 (279)
T ss_pred             CCHHHHHHHHHHHHHhCCCCcEEEeCcchHHHHHHHHHH
Confidence            7666665655544332  234555444555555554443

>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type

Probab=97.13  E-value=0.00081  Score=57.51  Aligned_cols=92  Identities=11%  Similarity=0.021  Sum_probs=62.4

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCC--cceeCCHHHHHhcccccCCccEEEE
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE--IPVMSDLTMVLGSISQSKARAVVID  112 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~g--i~v~~~l~ell~~~~~~~~~DVVID  112 (163)
                      ..+++|+| +|.||+.+++.+.....++-+.+.|+...  +...+.......+  +.+++|+++++.      +.|+|+-
T Consensus       128 ~~~lgiiG-~G~qA~~~l~al~~~~~~~~v~V~~r~~~--~~~~~~~~~~~~g~~v~~~~~~~eav~------~aDiVit  198 (325)
T TIGR02371       128 SSVLGIIG-AGRQAWTQLEALSRVFDLEEVSVYCRTPS--TREKFALRASDYEVPVRAATDPREAVE------GCDILVT  198 (325)
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHhcCCCCEEEEECCCHH--HHHHHHHHHHhhCCcEEEeCCHHHHhc------cCCEEEE
Confidence            36899999 69999999999988888999999986532  2222211000223  456799999985      8999995


Q ss_pred             ccCchhHHHHH-HHHHHcCCcEE-EeC
Q 031216          113 FTDASTVYDNV-KQATAFGMRSV-VYV  137 (163)
Q Consensus       113 fT~p~~~~~~~-~~al~~G~~vV-igt  137 (163)
                      +| |... +++ ...++.|.||. ||.
T Consensus       199 aT-~s~~-P~~~~~~l~~g~~v~~vGs  223 (325)
T TIGR02371       199 TT-PSRK-PVVKADWVSEGTHINAIGA  223 (325)
T ss_pred             ec-CCCC-cEecHHHcCCCCEEEecCC
Confidence            55 3332 222 34568899986 653

This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.

>KOG0409 consensus Predicted dehydrogenase [General function prediction only]

Probab=97.11  E-value=0.0053  Score=52.59  Aligned_cols=118  Identities=18%  Similarity=0.163  Sum_probs=80.0

Q ss_pred             eeeccCCCCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccc
Q 031216           24 FISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQ  103 (163)
Q Consensus        24 ~~~~~~~~~~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~  103 (163)
                      -+.++..+|+. .|||-+| .|.||+.+++.+.+ .+..++ +.|+...  ...++.    ..|..+.+++.|+.+    
T Consensus        25 ~~~s~~~~~s~-~~iGFIG-LG~MG~~M~~nLik-~G~kVt-V~dr~~~--k~~~f~----~~Ga~v~~sPaeVae----   90 (327)
T KOG0409|consen   25 TAMSSRITPSK-TRIGFIG-LGNMGSAMVSNLIK-AGYKVT-VYDRTKD--KCKEFQ----EAGARVANSPAEVAE----   90 (327)
T ss_pred             ccccccCCccc-ceeeEEe-eccchHHHHHHHHH-cCCEEE-EEeCcHH--HHHHHH----HhchhhhCCHHHHHh----
Confidence            36666666654 8999999 89999999999984 688887 6775431  122332    557888999999875    


Q ss_pred             cCCccEEEEc-cCchhHHHHHH------HHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCe
Q 031216          104 SKARAVVIDF-TDASTVYDNVK------QATAFGMRSVVYVPHIQLETVSALSAFCDKASM  157 (163)
Q Consensus       104 ~~~~DVVIDf-T~p~~~~~~~~------~al~~G~~vVigttg~~~e~~~~L~~~A~~~~V  157 (163)
                        ..|+||-. ++|..+.+.+.      ..+..|.+..+--+..+++...+|.+.++..+.
T Consensus        91 --~sDvvitmv~~~~~v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~~  149 (327)
T KOG0409|consen   91 --DSDVVITMVPNPKDVKDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKGG  149 (327)
T ss_pred             --hcCEEEEEcCChHhhHHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHHHHHhCCC
Confidence              89998743 34444444332      223455665455556778888888887776443

>PRK08223 hypothetical protein; Validated

Probab=97.10  E-value=0.0069  Score=51.39  Aligned_cols=96  Identities=21%  Similarity=0.287  Sum_probs=61.8

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC----------------CCcc----hh-hhccCCCCCCccee--
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS----------------VGED----IG-MVCDMEQPLEIPVM--   91 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~----------------~g~~----~~-~l~g~~~~~gi~v~--   91 (163)
                      .-||+|+| .|..|..++..+. ..|+.=..++|.+.                .|+.    +. .+..+.....+..+  
T Consensus        27 ~s~VlIvG-~GGLGs~va~~LA-~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~~~  104 (287)
T PRK08223         27 NSRVAIAG-LGGVGGIHLLTLA-RLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAFPE  104 (287)
T ss_pred             cCCEEEEC-CCHHHHHHHHHHH-HhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEEec
Confidence            46899999 5999999999987 57887788888421                1111    00 01111001122222  


Q ss_pred             ----CCHHHHHhcccccCCccEEEEccCc---hhHHHHHHHHHHcCCcEEEeCC
Q 031216           92 ----SDLTMVLGSISQSKARAVVIDFTDA---STVYDNVKQATAFGMRSVVYVP  138 (163)
Q Consensus        92 ----~~l~ell~~~~~~~~~DVVIDfT~p---~~~~~~~~~al~~G~~vVigtt  138 (163)
                          ++.++++.      ++|+|||.+..   +.-...-..|.+.|+|+|.+..
T Consensus       105 ~l~~~n~~~ll~------~~DlVvD~~D~~~~~~r~~ln~~c~~~~iP~V~~~~  152 (287)
T PRK08223        105 GIGKENADAFLD------GVDVYVDGLDFFEFDARRLVFAACQQRGIPALTAAP  152 (287)
T ss_pred             ccCccCHHHHHh------CCCEEEECCCCCcHHHHHHHHHHHHHcCCCEEEEec
Confidence                35566664      89999999853   4445666889999999998743

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=97.09  E-value=0.0058  Score=52.79  Aligned_cols=94  Identities=13%  Similarity=0.099  Sum_probs=58.4

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT  114 (163)
                      ..+|+|+| +|.||+.+++.+. ..+++++...++.....+...      ..++.+. +++++..      +.|+|+...
T Consensus        17 gktIgIIG-~GsmG~AlA~~L~-~sG~~Vvv~~r~~~~s~~~A~------~~G~~~~-s~~eaa~------~ADVVvLaV   81 (330)
T PRK05479         17 GKKVAIIG-YGSQGHAHALNLR-DSGVDVVVGLREGSKSWKKAE------ADGFEVL-TVAEAAK------WADVIMILL   81 (330)
T ss_pred             CCEEEEEe-eHHHHHHHHHHHH-HCCCEEEEEECCchhhHHHHH------HCCCeeC-CHHHHHh------cCCEEEEcC
Confidence            46899999 7999999999987 568888755443221111111      2344444 7888875      899999666


Q ss_pred             CchhHHHHH-H---HHHHcCCcEEEeCCCCCHHH
Q 031216          115 DASTVYDNV-K---QATAFGMRSVVYVPHIQLET  144 (163)
Q Consensus       115 ~p~~~~~~~-~---~al~~G~~vVigttg~~~e~  144 (163)
                      +|+...+.+ .   ..++.|.-+ +-..|++-..
T Consensus        82 Pd~~~~~V~~~~I~~~Lk~g~iL-~~a~G~~i~~  114 (330)
T PRK05479         82 PDEVQAEVYEEEIEPNLKEGAAL-AFAHGFNIHF  114 (330)
T ss_pred             CHHHHHHHHHHHHHhcCCCCCEE-EECCCCChhh
Confidence            665554444 2   223345444 5466776544

>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]

Probab=97.09  E-value=0.0049  Score=53.21  Aligned_cols=95  Identities=15%  Similarity=0.150  Sum_probs=65.6

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcc---hhhhccCCC-----CCCcceeCCHHHHHhcccccC
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGED---IGMVCDMEQ-----PLEIPVMSDLTMVLGSISQSK  105 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~---~~~l~g~~~-----~~gi~v~~~l~ell~~~~~~~  105 (163)
                      .+.+|.|.||+|.+|+.+++.+. ..|.++.|.++++..-+.   +.++-+.+.     ..++.-+++++++++      
T Consensus         5 ~~~~VcVTGAsGfIgswivk~LL-~rGY~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~------   77 (327)
T KOG1502|consen    5 EGKKVCVTGASGFIGSWIVKLLL-SRGYTVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAID------   77 (327)
T ss_pred             CCcEEEEeCCchHHHHHHHHHHH-hCCCEEEEEEcCcchhhhHHHHHhcccCcccceEEeccccccchHHHHHh------
Confidence            56789999999999999999998 689999999986432111   222222110     123344578899986      


Q ss_pred             CccEEEEccCc--------h---------hHHHHHHHHHHcC--CcEEE
Q 031216          106 ARAVVIDFTDA--------S---------TVYDNVKQATAFG--MRSVV  135 (163)
Q Consensus       106 ~~DVVIDfT~p--------~---------~~~~~~~~al~~G--~~vVi  135 (163)
                      .+|.|+....|        +         .+...++.|.+..  ++||.
T Consensus        78 gcdgVfH~Asp~~~~~~~~e~~li~pav~Gt~nVL~ac~~~~sVkrvV~  126 (327)
T KOG1502|consen   78 GCDGVFHTASPVDFDLEDPEKELIDPAVKGTKNVLEACKKTKSVKRVVY  126 (327)
T ss_pred             CCCEEEEeCccCCCCCCCcHHhhhhHHHHHHHHHHHHHhccCCcceEEE
Confidence            89999986544        1         2345667888888  77765

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=97.07  E-value=0.0026  Score=50.33  Aligned_cols=108  Identities=16%  Similarity=0.222  Sum_probs=60.9

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC-------CCc------chhhhccCC-CCCCcceeCCHHHHHhcc
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-------VGE------DIGMVCDME-QPLEIPVMSDLTMVLGSI  101 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~-------~g~------~~~~l~g~~-~~~gi~v~~~l~ell~~~  101 (163)
                      |||+|+| +|++|-.++..+. ..|.+++| +|...       .|.      .+.+++... ...+...++++++++.  
T Consensus         1 M~I~ViG-lGyvGl~~A~~lA-~~G~~V~g-~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~--   75 (185)
T PF03721_consen    1 MKIAVIG-LGYVGLPLAAALA-EKGHQVIG-VDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIK--   75 (185)
T ss_dssp             -EEEEE---STTHHHHHHHHH-HTTSEEEE-E-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHH--
T ss_pred             CEEEEEC-CCcchHHHHHHHH-hCCCEEEE-EeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhh--
Confidence            6999999 7999998888776 67899986 56321       111      112222100 0234456788888774  


Q ss_pred             cccCCccEEEEcc-Cc------------hhHHHHHHHHHHcCCcEEEeCC---CCCHHHH-HHHHHHh
Q 031216          102 SQSKARAVVIDFT-DA------------STVYDNVKQATAFGMRSVVYVP---HIQLETV-SALSAFC  152 (163)
Q Consensus       102 ~~~~~~DVVIDfT-~p------------~~~~~~~~~al~~G~~vVigtt---g~~~e~~-~~L~~~A  152 (163)
                          +.|+++.+- +|            ..+.+.+...++.+.-||+.+|   |.+++.. +.|++..
T Consensus        76 ----~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~  139 (185)
T PF03721_consen   76 ----DADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRS  139 (185)
T ss_dssp             ----H-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHC
T ss_pred             ----ccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhc
Confidence                799888543 23            1234455566677888888887   6766444 3444444

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+))

Probab=97.06  E-value=0.00098  Score=57.67  Aligned_cols=99  Identities=12%  Similarity=0.150  Sum_probs=58.7

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCC--------cEEEEEEecC-CCCc-----------chhhhccCCCCCCcceeCCHHH
Q 031216           37 KVIINGAVKEIGRAAVIAVTKARG--------MEVAGAIDSH-SVGE-----------DIGMVCDMEQPLEIPVMSDLTM   96 (163)
Q Consensus        37 rV~VvGa~G~mG~~i~~~i~~~~~--------~eLvgvid~~-~~g~-----------~~~~l~g~~~~~gi~v~~~l~e   96 (163)
                      ||+|+| +|.+|..++..+.+. +        .++.--.... ..+.           +..-+.+..-+.++..++|+++
T Consensus         1 kI~VIG-aG~wGtALA~~la~n-g~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~e   78 (342)
T TIGR03376         1 RVAVVG-SGNWGTAIAKIVAEN-ARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVE   78 (342)
T ss_pred             CEEEEC-cCHHHHHHHHHHHHc-CCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHH
Confidence            689999 599999999988753 3        4443222100 0011           1111112211334567799999


Q ss_pred             HHhcccccCCccEEEEccCchhHHHHHH---HHHHcCCcEEEeCCCCCHH
Q 031216           97 VLGSISQSKARAVVIDFTDASTVYDNVK---QATAFGMRSVVYVPHIQLE  143 (163)
Q Consensus        97 ll~~~~~~~~~DVVIDfT~p~~~~~~~~---~al~~G~~vVigttg~~~e  143 (163)
                      +++      ..|+||-..++....+.+.   ..++.+.++|+-+-|++.+
T Consensus        79 al~------~ADiIIlAVPs~~i~~vl~~l~~~l~~~~~iVs~tKGie~~  122 (342)
T TIGR03376        79 AAK------GADILVFVIPHQFLEGICKQLKGHVKPNARAISCIKGLEVS  122 (342)
T ss_pred             HHh------cCCEEEEECChHHHHHHHHHHHhhcCCCCEEEEEeCCcccC
Confidence            885      8999884444444444343   3456677888877788655

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=97.04  E-value=0.0048  Score=48.22  Aligned_cols=93  Identities=16%  Similarity=0.206  Sum_probs=54.9

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC-----C----------Ccc-h---hhhc-cCCCCCCccee-----
Q 031216           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-----V----------GED-I---GMVC-DMEQPLEIPVM-----   91 (163)
Q Consensus        37 rV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~-----~----------g~~-~---~~l~-g~~~~~gi~v~-----   91 (163)
                      ||+|+| .|.||..+++.+. ..++.=+-++|.+.     .          |+. +   ...+ .+.....+..+     
T Consensus         1 ~VlViG-~GglGs~ia~~La-~~Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~   78 (174)
T cd01487           1 KVGIAG-AGGLGSNIAVLLA-RSGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREINPFVKIEAINIKID   78 (174)
T ss_pred             CEEEEC-cCHHHHHHHHHHH-HcCCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHCCCCEEEEEEeecC
Confidence            699999 5999999999987 46786555788431     1          110 0   0000 00001112111     


Q ss_pred             -CCHHHHHhcccccCCccEEEEccCchhH-HHHHHHHHHc-CCcEEEeC
Q 031216           92 -SDLTMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAF-GMRSVVYV  137 (163)
Q Consensus        92 -~~l~ell~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~-G~~vVigt  137 (163)
                       +++++.+.      ++|+|||++..... ......+.++ ++++|.+.
T Consensus        79 ~~~~~~~l~------~~DlVi~~~d~~~~r~~i~~~~~~~~~ip~i~~~  121 (174)
T cd01487          79 ENNLEGLFG------DCDIVVEAFDNAETKAMLAESLLGNKNKPVVCAS  121 (174)
T ss_pred             hhhHHHHhc------CCCEEEECCCCHHHHHHHHHHHHHHCCCCEEEEe
Confidence             23345553      89999998744444 4466777777 99999864

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>TIGR00465 ilvC ketol-acid reductoisomerase

Probab=97.03  E-value=0.0035  Score=53.66  Aligned_cols=94  Identities=11%  Similarity=0.115  Sum_probs=57.9

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEccC
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT~  115 (163)
                      .||+++| +|+||+.+++.+. ..+++++...++..  .....+.    ..|+.++ +.+++..      ..|+|+....
T Consensus         4 kkIgiIG-~G~mG~AiA~~L~-~sG~~Viv~~~~~~--~~~~~a~----~~Gv~~~-s~~ea~~------~ADiVvLaVp   68 (314)
T TIGR00465         4 KTVAIIG-YGSQGHAQALNLR-DSGLNVIVGLRKGG--ASWKKAT----EDGFKVG-TVEEAIP------QADLIMNLLP   68 (314)
T ss_pred             CEEEEEe-EcHHHHHHHHHHH-HCCCeEEEEECcCh--hhHHHHH----HCCCEEC-CHHHHHh------cCCEEEEeCC
Confidence            5799999 6999999999997 45777654444321  1112211    2345444 5777764      8999997777


Q ss_pred             chhHHHH-H---HHHHHcCCcEEEeCCCCCHHHH
Q 031216          116 ASTVYDN-V---KQATAFGMRSVVYVPHIQLETV  145 (163)
Q Consensus       116 p~~~~~~-~---~~al~~G~~vVigttg~~~e~~  145 (163)
                      |+..... .   ...++.|. +|+=..|++-...
T Consensus        69 p~~~~~~v~~ei~~~l~~g~-iVs~aaG~~i~~~  101 (314)
T TIGR00465        69 DEVQHEVYEAEIQPLLKEGK-TLGFSHGFNIHFV  101 (314)
T ss_pred             cHhHHHHHHHHHHhhCCCCc-EEEEeCCccHhhc
Confidence            7733332 2   23334453 6665668876553

This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway

>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2

Probab=97.02  E-value=0.011  Score=49.41  Aligned_cols=115  Identities=13%  Similarity=0.101  Sum_probs=75.5

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec-----CCCCcchhhh---ccCCC-CC-----------CcceeCC
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-----HSVGEDIGMV---CDMEQ-PL-----------EIPVMSD   93 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~-----~~~g~~~~~l---~g~~~-~~-----------gi~v~~~   93 (163)
                      +..||+|-| .|++|+..++.+. ..+.+++++.|+     .+.|-|+.++   ..... ..           +.. +-+
T Consensus        37 ~g~~vaIqG-fGnVG~~~a~~L~-e~GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~~a~-~~~  113 (254)
T cd05313          37 KGKRVAISG-SGNVAQYAAEKLL-ELGAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTAK-YFE  113 (254)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHH-HCCCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCCCCE-EeC
Confidence            457999999 7999999999887 579999999994     2456654443   11000 00           111 236


Q ss_pred             HHHHHhcccccCCccEEEEccCchhH-HHHHHHHHHcCCcEEEeCC--CCCHHHHHHHHHHhhhcCeEEc
Q 031216           94 LTMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMVST  160 (163)
Q Consensus        94 l~ell~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigtt--g~~~e~~~~L~~~A~~~~Vv~t  160 (163)
                      .++++.     .++||++=+..-... .+++....+.+..+|+|-.  .++++..+.|    ++.+|++.
T Consensus       114 ~~~~~~-----~~~DIliPcAl~~~I~~~na~~i~~~~ak~I~EgAN~p~t~~a~~~L----~~rGI~vv  174 (254)
T cd05313         114 GKKPWE-----VPCDIAFPCATQNEVDAEDAKLLVKNGCKYVAEGANMPCTAEAIEVF----RQAGVLFA  174 (254)
T ss_pred             Ccchhc-----CCCcEEEeccccccCCHHHHHHHHHcCCEEEEeCCCCCCCHHHHHHH----HHCCcEEE
Confidence            667776     599999955544443 5677766677999999887  3566443333    34466664

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=97.02  E-value=0.01  Score=47.55  Aligned_cols=80  Identities=15%  Similarity=0.086  Sum_probs=45.8

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhcc----CCCCCCc--ce-eCCHHHHHhcccccCCcc
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCD----MEQPLEI--PV-MSDLTMVLGSISQSKARA  108 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g----~~~~~gi--~v-~~~l~ell~~~~~~~~~D  108 (163)
                      |||+|+|++|.||+.+++.+.+ .+.++.. .++..  .....+..    .....++  .+ ..+..+++.      ..|
T Consensus         1 MkI~IIGG~G~mG~ala~~L~~-~G~~V~v-~~r~~--~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~------~aD   70 (219)
T TIGR01915         1 MKIAVLGGTGDQGKGLALRLAK-AGNKIII-GSRDL--EKAEEAAAKALEELGHGGSDIKVTGADNAEAAK------RAD   70 (219)
T ss_pred             CEEEEEcCCCHHHHHHHHHHHh-CCCEEEE-EEcCH--HHHHHHHHHHHhhccccCCCceEEEeChHHHHh------cCC
Confidence            5899997569999999999874 5677764 45432  11111100    0001121  12 235556654      889


Q ss_pred             EEEEccCchhHHHHHHH
Q 031216          109 VVIDFTDASTVYDNVKQ  125 (163)
Q Consensus       109 VVIDfT~p~~~~~~~~~  125 (163)
                      +||-+..|....+.+..
T Consensus        71 vVilavp~~~~~~~l~~   87 (219)
T TIGR01915        71 VVILAVPWDHVLKTLES   87 (219)
T ss_pred             EEEEECCHHHHHHHHHH
Confidence            99966666655555543

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]

Probab=97.02  E-value=0.0027  Score=53.73  Aligned_cols=78  Identities=23%  Similarity=0.307  Sum_probs=55.5

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc-
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT-  114 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT-  114 (163)
                      |||.|+|++|.+|+.+.+.+.  ++.++++.....               .++.-.+.+.+++.+    .+||+||.+. 
T Consensus         1 M~iLi~G~~GqLG~~L~~~l~--~~~~v~a~~~~~---------------~Ditd~~~v~~~i~~----~~PDvVIn~AA   59 (281)
T COG1091           1 MKILITGANGQLGTELRRALP--GEFEVIATDRAE---------------LDITDPDAVLEVIRE----TRPDVVINAAA   59 (281)
T ss_pred             CcEEEEcCCChHHHHHHHHhC--CCceEEeccCcc---------------ccccChHHHHHHHHh----hCCCEEEECcc
Confidence            469999999999999999886  788888654332               122223456777774    7899999863 


Q ss_pred             ---------Cch--------hHHHHHHHHHHcCCcEE
Q 031216          115 ---------DAS--------TVYDNVKQATAFGMRSV  134 (163)
Q Consensus       115 ---------~p~--------~~~~~~~~al~~G~~vV  134 (163)
                               .|+        .....+..|-+.|..+|
T Consensus        60 yt~vD~aE~~~e~A~~vNa~~~~~lA~aa~~~ga~lV   96 (281)
T COG1091          60 YTAVDKAESEPELAFAVNATGAENLARAAAEVGARLV   96 (281)
T ss_pred             ccccccccCCHHHHHHhHHHHHHHHHHHHHHhCCeEE
Confidence                     222        22456678888998887

>PLN02858 fructose-bisphosphate aldolase

Probab=97.01  E-value=0.0094  Score=59.97  Aligned_cols=109  Identities=11%  Similarity=0.029  Sum_probs=70.0

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEc
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDf  113 (163)
                      .+.||+++| +|+||..+++.+. ..++++. +.|++.  .....+.    ..+....++++++..      .+|+||-+
T Consensus       323 ~~~~IGfIG-lG~MG~~mA~~L~-~~G~~V~-v~dr~~--~~~~~l~----~~Ga~~~~s~~e~~~------~aDvVi~~  387 (1378)
T PLN02858        323 PVKRIGFIG-LGAMGFGMASHLL-KSNFSVC-GYDVYK--PTLVRFE----NAGGLAGNSPAEVAK------DVDVLVIM  387 (1378)
T ss_pred             CCCeEEEEC-chHHHHHHHHHHH-HCCCEEE-EEeCCH--HHHHHHH----HcCCeecCCHHHHHh------cCCEEEEe
Confidence            357899999 7999999999987 4678876 567532  2223332    234455678888875      89998854


Q ss_pred             cC-chhHHHHH------HHHHHcCCcEEEeCCCCCHHHHHHHHHHhhh--cCeE
Q 031216          114 TD-ASTVYDNV------KQATAFGMRSVVYVPHIQLETVSALSAFCDK--ASMV  158 (163)
Q Consensus       114 T~-p~~~~~~~------~~al~~G~~vVigttg~~~e~~~~L~~~A~~--~~Vv  158 (163)
                      -. |..+.+.+      ...++.|. +|+-.+..+++...+|.+.+++  .++-
T Consensus       388 V~~~~~v~~Vl~g~~g~~~~l~~g~-ivVd~STvsP~~~~~la~~l~~~g~g~~  440 (1378)
T PLN02858        388 VANEVQAENVLFGDLGAVSALPAGA-SIVLSSTVSPGFVIQLERRLENEGRDIK  440 (1378)
T ss_pred             cCChHHHHHHHhchhhHHhcCCCCC-EEEECCCCCHHHHHHHHHHHHhhCCCcE
Confidence            33 44444433      12234454 4454556667788888877766  5543

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=97.01  E-value=0.0048  Score=54.97  Aligned_cols=110  Identities=14%  Similarity=0.068  Sum_probs=65.4

Q ss_pred             ccCCCCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCC
Q 031216           27 CSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKA  106 (163)
Q Consensus        27 ~~~~~~~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~  106 (163)
                      ++++....-.+|+|+| +|.+|+.+++.+.. -+++++ ++|++..  +..+..    ..|..+ .++++++.      .
T Consensus       204 rat~~~l~Gk~VlViG-~G~IG~~vA~~lr~-~Ga~Vi-V~d~dp~--ra~~A~----~~G~~v-~~l~eal~------~  267 (425)
T PRK05476        204 RATNVLIAGKVVVVAG-YGDVGKGCAQRLRG-LGARVI-VTEVDPI--CALQAA----MDGFRV-MTMEEAAE------L  267 (425)
T ss_pred             HhccCCCCCCEEEEEC-CCHHHHHHHHHHHh-CCCEEE-EEcCCch--hhHHHH----hcCCEe-cCHHHHHh------C
Confidence            3445444456899999 69999999999875 477755 5664321  111110    123333 36788774      8


Q ss_pred             ccEEEEccCchhH-HHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHh
Q 031216          107 RAVVIDFTDASTV-YDNVKQATAFGMRSVVYVPHIQLETVSALSAFC  152 (163)
Q Consensus       107 ~DVVIDfT~p~~~-~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A  152 (163)
                      +|+||++|-.... .......++.|.-++.....-.+-+.+.|.+.+
T Consensus       268 aDVVI~aTG~~~vI~~~~~~~mK~GailiNvG~~d~Eid~~~L~~~~  314 (425)
T PRK05476        268 GDIFVTATGNKDVITAEHMEAMKDGAILANIGHFDNEIDVAALEELA  314 (425)
T ss_pred             CCEEEECCCCHHHHHHHHHhcCCCCCEEEEcCCCCCccChHHHhhcC
Confidence            9999998843333 334555667776555533322334455566654

>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional

Probab=97.01  E-value=0.0037  Score=52.79  Aligned_cols=33  Identities=27%  Similarity=0.209  Sum_probs=28.8

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvi   67 (163)
                      |+||.|+|++|.+|+.+++.+.+..+.++.++.
T Consensus         1 m~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~   33 (347)
T PRK11908          1 MKKVLILGVNGFIGHHLSKRILETTDWEVYGMD   33 (347)
T ss_pred             CcEEEEECCCcHHHHHHHHHHHhCCCCeEEEEe
Confidence            578999999999999999999866678988764

>TIGR00936 ahcY adenosylhomocysteinase

Probab=97.00  E-value=0.0075  Score=53.45  Aligned_cols=114  Identities=14%  Similarity=0.038  Sum_probs=67.5

Q ss_pred             eeccCCCCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhccccc
Q 031216           25 ISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQS  104 (163)
Q Consensus        25 ~~~~~~~~~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~  104 (163)
                      |.+.++.....-+|+|+| +|.+|+.+++.+. .-+++++ ++|.+..  +..+..    ..|..+ .++++++.     
T Consensus       185 i~r~t~~~l~Gk~VvViG-~G~IG~~vA~~ak-~~Ga~Vi-V~d~dp~--r~~~A~----~~G~~v-~~leeal~-----  249 (406)
T TIGR00936       185 ILRATNLLIAGKTVVVAG-YGWCGKGIAMRAR-GMGARVI-VTEVDPI--RALEAA----MDGFRV-MTMEEAAK-----  249 (406)
T ss_pred             HHHhcCCCCCcCEEEEEC-CCHHHHHHHHHHh-hCcCEEE-EEeCChh--hHHHHH----hcCCEe-CCHHHHHh-----
Confidence            345566555557999999 6999999999887 5688865 4664321  111111    123333 35677764     


Q ss_pred             CCccEEEEccCchhH-HHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhh
Q 031216          105 KARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDK  154 (163)
Q Consensus       105 ~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~  154 (163)
                       ..|++|++|-.... .......++.|.-++...-+-..-+.+.|.+++.+
T Consensus       250 -~aDVVItaTG~~~vI~~~~~~~mK~GailiN~G~~~~eId~~aL~~~~~~  299 (406)
T TIGR00936       250 -IGDIFITATGNKDVIRGEHFENMKDGAIVANIGHFDVEIDVKALEELAVE  299 (406)
T ss_pred             -cCCEEEECCCCHHHHHHHHHhcCCCCcEEEEECCCCceeCHHHHHHHHhh
Confidence             78999988744443 34455666777665543322112344556666544

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=96.99  E-value=0.0063  Score=52.50  Aligned_cols=96  Identities=20%  Similarity=0.206  Sum_probs=59.3

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC-----C-------cchh-----------hhccCCCCCCccee
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-----G-------EDIG-----------MVCDMEQPLEIPVM   91 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~-----g-------~~~~-----------~l~g~~~~~gi~v~   91 (163)
                      ..||+|+| +|.+|..+++.+. ..|+.-+.++|.+..     +       .|++           .+..+.....+..+
T Consensus        24 ~~~VlIiG-~GglGs~va~~La-~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~~  101 (338)
T PRK12475         24 EKHVLIVG-AGALGAANAEALV-RAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVPV  101 (338)
T ss_pred             CCcEEEEC-CCHHHHHHHHHHH-HcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEEE
Confidence            46899999 5999999999987 568866678885421     0       0110           00001001112111


Q ss_pred             ------CCHHHHHhcccccCCccEEEEccCchhH-HHHHHHHHHcCCcEEEeCC
Q 031216           92 ------SDLTMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP  138 (163)
Q Consensus        92 ------~~l~ell~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigtt  138 (163)
                            .++++++      .++|+|||++..... .-.-..|.+.|+|.|.+..
T Consensus       102 ~~~~~~~~~~~~~------~~~DlVid~~D~~~~r~~in~~~~~~~ip~i~~~~  149 (338)
T PRK12475        102 VTDVTVEELEELV------KEVDLIIDATDNFDTRLLINDLSQKYNIPWIYGGC  149 (338)
T ss_pred             eccCCHHHHHHHh------cCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEe
Confidence                  2345555      389999999855444 3444788899999997643

>PLN02858 fructose-bisphosphate aldolase

Probab=96.97  E-value=0.01  Score=59.66  Aligned_cols=105  Identities=13%  Similarity=0.095  Sum_probs=70.8

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEccC
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT~  115 (163)
                      -||+++| +|.||..+++.+.+ .+.++. +.|++.  .....+.    ..|..+.+++.++..      .+|+||-+-.
T Consensus         5 ~~IGfIG-LG~MG~~mA~~L~~-~G~~v~-v~dr~~--~~~~~l~----~~Ga~~~~s~~e~a~------~advVi~~l~   69 (1378)
T PLN02858          5 GVVGFVG-LDSLSFELASSLLR-SGFKVQ-AFEIST--PLMEKFC----ELGGHRCDSPAEAAK------DAAALVVVLS   69 (1378)
T ss_pred             CeEEEEc-hhHHHHHHHHHHHH-CCCeEE-EEcCCH--HHHHHHH----HcCCeecCCHHHHHh------cCCEEEEEcC
Confidence            5799999 89999999999984 688876 677642  2233333    346677889999875      7899884332


Q ss_pred             -chhHHHHH---HHHH---HcCCcEEEeCCCCCHHHHHHHHHHhhhcC
Q 031216          116 -ASTVYDNV---KQAT---AFGMRSVVYVPHIQLETVSALSAFCDKAS  156 (163)
Q Consensus       116 -p~~~~~~~---~~al---~~G~~vVigttg~~~e~~~~L~~~A~~~~  156 (163)
                       ++.+.+.+   .-.+   ..| .+++-.+..+++...+|.+..++.|
T Consensus        70 ~~~~v~~V~~g~~g~~~~l~~g-~iivd~STi~p~~~~~la~~l~~~g  116 (1378)
T PLN02858         70 HPDQVDDVFFGDEGAAKGLQKG-AVILIRSTILPLQLQKLEKKLTERK  116 (1378)
T ss_pred             ChHHHHHHHhchhhHHhcCCCc-CEEEECCCCCHHHHHHHHHHHHhcC
Confidence             23333332   1122   234 3566666777888889988888877

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.96  E-value=0.006  Score=51.15  Aligned_cols=100  Identities=14%  Similarity=0.115  Sum_probs=54.8

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCC-cchhh----hccCCCC--------CCcceeCCHHHHHhcc
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG-EDIGM----VCDMEQP--------LEIPVMSDLTMVLGSI  101 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g-~~~~~----l~g~~~~--------~gi~v~~~l~ell~~~  101 (163)
                      +.||+|+| .|.||..++..+. ..+.++.. +|+.... ....+    ..+...+        ..+...+++++++.  
T Consensus         4 ~~~I~vIG-aG~mG~~iA~~l~-~~g~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--   78 (311)
T PRK06130          4 IQNLAIIG-AGTMGSGIAALFA-RKGLQVVL-IDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVS--   78 (311)
T ss_pred             ccEEEEEC-CCHHHHHHHHHHH-hCCCeEEE-EECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhc--
Confidence            46899999 5999999999987 46788774 5642110 00000    0110000        01334577877764  


Q ss_pred             cccCCccEEEEccCchh--HHHHH---HHHHHcCCcEEEeCCCCCHH
Q 031216          102 SQSKARAVVIDFTDAST--VYDNV---KQATAFGMRSVVYVPHIQLE  143 (163)
Q Consensus       102 ~~~~~~DVVIDfT~p~~--~~~~~---~~al~~G~~vVigttg~~~e  143 (163)
                          ++|+||.+..+..  ..+..   ...+..+.-+++-|.+++.+
T Consensus        79 ----~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~~~~  121 (311)
T PRK06130         79 ----GADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLPIT  121 (311)
T ss_pred             ----cCCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCCCHH
Confidence                8999997765543  12222   22233333344555577644

>PRK08507 prephenate dehydrogenase; Validated

Probab=96.96  E-value=0.014  Score=48.37  Aligned_cols=84  Identities=12%  Similarity=0.183  Sum_probs=50.0

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCc--EEEEEEecCCCCcchhhhccCCCCCCcc-eeCCHHHHHhcccccCCccEEEE
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGM--EVAGAIDSHSVGEDIGMVCDMEQPLEIP-VMSDLTMVLGSISQSKARAVVID  112 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~--eLvgvid~~~~g~~~~~l~g~~~~~gi~-v~~~l~ell~~~~~~~~~DVVID  112 (163)
                      +||+|+| +|.||..+++.+.+. +.  ++. ++|++..  ......    ..++. .+.+++++.       ++|+||.
T Consensus         1 m~I~iIG-~G~mG~sla~~l~~~-g~~~~v~-~~d~~~~--~~~~~~----~~g~~~~~~~~~~~~-------~aD~Vil   64 (275)
T PRK08507          1 MKIGIIG-LGLMGGSLGLALKEK-GLISKVY-GYDHNEL--HLKKAL----ELGLVDEIVSFEELK-------KCDVIFL   64 (275)
T ss_pred             CEEEEEc-cCHHHHHHHHHHHhc-CCCCEEE-EEcCCHH--HHHHHH----HCCCCcccCCHHHHh-------cCCEEEE
Confidence            4899999 699999999998754 43  554 4565321  111111    22321 234666642       5899997


Q ss_pred             ccCchhHHHHHHHHH--HcCCcEEEe
Q 031216          113 FTDASTVYDNVKQAT--AFGMRSVVY  136 (163)
Q Consensus       113 fT~p~~~~~~~~~al--~~G~~vVig  136 (163)
                      ++.|....+.+....  ..+. +|+-
T Consensus        65 avp~~~~~~~~~~l~~l~~~~-iv~d   89 (275)
T PRK08507         65 AIPVDAIIEILPKLLDIKENT-TIID   89 (275)
T ss_pred             eCcHHHHHHHHHHHhccCCCC-EEEE
Confidence            777776666665443  2343 5553

>PRK07340 ornithine cyclodeaminase; Validated

Probab=96.92  E-value=0.0021  Score=54.52  Aligned_cols=92  Identities=16%  Similarity=0.083  Sum_probs=58.5

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcce-eCCHHHHHhcccccCCccEEEEc
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDLTMVLGSISQSKARAVVIDF  113 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v-~~~l~ell~~~~~~~~~DVVIDf  113 (163)
                      ..+++|+| +|.+|+.+++.+....+.+-+.+.+++..  +...+...-...++.+ ++++++++.      ++|+||-+
T Consensus       125 ~~~v~IiG-aG~qa~~~~~al~~~~~~~~v~v~~r~~~--~a~~~a~~~~~~~~~~~~~~~~~av~------~aDiVita  195 (304)
T PRK07340        125 PGDLLLIG-TGVQARAHLEAFAAGLPVRRVWVRGRTAA--SAAAFCAHARALGPTAEPLDGEAIPE------AVDLVVTA  195 (304)
T ss_pred             CCEEEEEC-CcHHHHHHHHHHHHhCCCCEEEEEcCCHH--HHHHHHHHHHhcCCeeEECCHHHHhh------cCCEEEEc
Confidence            36899999 69999999999987667777778886531  1222221000112232 578988885      99999976


Q ss_pred             cCchhHHHHHHHHHHcCCcEE-EeC
Q 031216          114 TDASTVYDNVKQATAFGMRSV-VYV  137 (163)
Q Consensus       114 T~p~~~~~~~~~al~~G~~vV-igt  137 (163)
                      |+...  +.+...++.|.|+. ||.
T Consensus       196 T~s~~--Pl~~~~~~~g~hi~~iGs  218 (304)
T PRK07340        196 TTSRT--PVYPEAARAGRLVVAVGA  218 (304)
T ss_pred             cCCCC--ceeCccCCCCCEEEecCC
Confidence            64322  22222368888877 443

>TIGR00243 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase

Probab=96.90  E-value=0.0085  Score=52.80  Aligned_cols=103  Identities=15%  Similarity=0.099  Sum_probs=63.8

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCC-cEEEEEEecCCCC---cchhh----------------hccCCC--CCCcceeC
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARG-MEVAGAIDSHSVG---EDIGM----------------VCDMEQ--PLEIPVMS   92 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~-~eLvgvid~~~~g---~~~~~----------------l~g~~~--~~gi~v~~   92 (163)
                      |.||+|.|+||-+|+..++.+.++|+ ++++++...+...   +.+.+                +-..-.  ..++.++.
T Consensus         1 Mk~i~IlGsTGSIG~qtL~Vi~~~~~~f~v~~Laa~~n~~~L~~q~~~f~p~~v~i~d~~~~~~l~~~l~~~~~~~~v~~   80 (389)
T TIGR00243         1 MKQIVILGSTGSIGKSTLDVVRHNPDHFQVVALSAGKNVALMVEQILEFRPKFVAIDDEASLKDLKTMLQQQGSRTEVLV   80 (389)
T ss_pred             CceEEEEecChHHHHHHHHHHHhCccccEEEEEEcCCCHHHHHHHHHHcCCCEEEEcCHHHHHHHHHHhhcCCCCcEEEE
Confidence            46899999999999999999888765 9999998743110   00000                000000  00234443


Q ss_pred             CHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeCC
Q 031216           93 DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP  138 (163)
Q Consensus        93 ~l~ell~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigtt  138 (163)
                      ..+.+. ++....++|+|+....=-....-...|+++|+.+-...-
T Consensus        81 G~~~l~-~l~~~~~~D~vv~AivG~aGL~pt~~Ai~~gk~iaLANK  125 (389)
T TIGR00243        81 GEEGIC-EMAALEDVDQVMNAIVGAAGLLPTLAAIRAGKTIALANK  125 (389)
T ss_pred             CHHHHH-HHHcCCCCCEEEEhhhcHhhHHHHHHHHHCCCcEEEech
Confidence            333322 122246789999655555556777888999999887554

1-deoxy-D-xylulose 5-phosphate is converted to 2-C-methyl-D-erythritol 4-phosphate in the presence of NADPH. It is involved in the synthesis of isopentenyl diphosphate (IPP), a basic building block in isoprenoid, thiamin, and pyridoxal biosynthesis.

>PRK08605 D-lactate dehydrogenase; Validated

Probab=96.90  E-value=0.0061  Score=52.28  Aligned_cols=102  Identities=18%  Similarity=0.146  Sum_probs=59.2

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT  114 (163)
                      -.+|+|+| .|.||+.+++.+.+.-++++.+ .|+... ..   .     ...+...+++++++.      ..|+|+...
T Consensus       146 g~~VgIIG-~G~IG~~vA~~L~~~~g~~V~~-~d~~~~-~~---~-----~~~~~~~~~l~ell~------~aDvIvl~l  208 (332)
T PRK08605        146 DLKVAVIG-TGRIGLAVAKIFAKGYGSDVVA-YDPFPN-AK---A-----ATYVDYKDTIEEAVE------GADIVTLHM  208 (332)
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHhcCCCEEEE-ECCCcc-Hh---H-----HhhccccCCHHHHHH------hCCEEEEeC
Confidence            46899999 6999999999985445888875 564321 11   1     112233468999985      899988554


Q ss_pred             CchhHHHH-----HHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhh
Q 031216          115 DASTVYDN-----VKQATAFGMRSVVYVPHIQLETVSALSAFCDK  154 (163)
Q Consensus       115 ~p~~~~~~-----~~~al~~G~~vVigttg~~~e~~~~L~~~A~~  154 (163)
                      +......+     ....++.|.-+|--..|.-.++ +.|.++.+.
T Consensus       209 P~t~~t~~li~~~~l~~mk~gailIN~sRG~~vd~-~aL~~aL~~  252 (332)
T PRK08605        209 PATKYNHYLFNADLFKHFKKGAVFVNCARGSLVDT-KALLDALDN  252 (332)
T ss_pred             CCCcchhhhcCHHHHhcCCCCcEEEECCCCcccCH-HHHHHHHHh
Confidence            22211122     2344566765554444543333 334444443

>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=96.89  E-value=0.0086  Score=51.74  Aligned_cols=111  Identities=16%  Similarity=0.171  Sum_probs=71.7

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEE-EEecC-----CCCcchhhhc-cCCCCCCcceeCCHHHHHhcccccCCc
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAG-AIDSH-----SVGEDIGMVC-DMEQPLEIPVMSDLTMVLGSISQSKAR  107 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvg-vid~~-----~~g~~~~~l~-g~~~~~gi~v~~~l~ell~~~~~~~~~  107 (163)
                      |+||+|+| .|..|..++..+.+. +.++.- ..|..     ...+.-..++ +..-+.++..++|++++++      .+
T Consensus         1 ~~kI~ViG-aGswGTALA~~la~n-g~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~------~a   72 (329)
T COG0240           1 MMKIAVIG-AGSWGTALAKVLARN-GHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALD------GA   72 (329)
T ss_pred             CceEEEEc-CChHHHHHHHHHHhc-CCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHh------cC
Confidence            57999999 599999999998754 344432 22210     0011111222 2222556777899999985      79


Q ss_pred             cEEEEccCchhH-HHHHH---HHHHcCCcEEEeCCCCCHHHHHHHHHHhhh
Q 031216          108 AVVIDFTDASTV-YDNVK---QATAFGMRSVVYVPHIQLETVSALSAFCDK  154 (163)
Q Consensus       108 DVVIDfT~p~~~-~~~~~---~al~~G~~vVigttg~~~e~~~~L~~~A~~  154 (163)
                      |+|+ +..|... .+.++   ..+..+..+|+.+-|+.++....+.+..++
T Consensus        73 d~iv-~avPs~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e  122 (329)
T COG0240          73 DIIV-IAVPSQALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEE  122 (329)
T ss_pred             CEEE-EECChHHHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHH
Confidence            9988 6656554 34443   356788999998889877666666666555

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=96.89  E-value=0.0093  Score=49.02  Aligned_cols=96  Identities=22%  Similarity=0.298  Sum_probs=59.5

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC-----Cc-------chh---------hhccCCCCCCccee--
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-----GE-------DIG---------MVCDMEQPLEIPVM--   91 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~-----g~-------~~~---------~l~g~~~~~gi~v~--   91 (163)
                      ..||.|+| .|.+|..+++.+. ..|+.=..++|.+..     ++       +++         .+..+.....+..+  
T Consensus        24 ~~~VlvvG-~GglGs~va~~La-~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~~~~  101 (240)
T TIGR02355        24 ASRVLIVG-LGGLGCAASQYLA-AAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINPINA  101 (240)
T ss_pred             CCcEEEEC-cCHHHHHHHHHHH-HcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEEEec
Confidence            46899999 5999999999997 467777778884311     10       111         00000001112222  


Q ss_pred             ----CCHHHHHhcccccCCccEEEEccCc-hhHHHHHHHHHHcCCcEEEeCC
Q 031216           92 ----SDLTMVLGSISQSKARAVVIDFTDA-STVYDNVKQATAFGMRSVVYVP  138 (163)
Q Consensus        92 ----~~l~ell~~~~~~~~~DVVIDfT~p-~~~~~~~~~al~~G~~vVigtt  138 (163)
                          +++++++      .++|+|||++.. +.-...-..|.++++|+|.|..
T Consensus       102 ~i~~~~~~~~~------~~~DlVvd~~D~~~~r~~ln~~~~~~~ip~v~~~~  147 (240)
T TIGR02355       102 KLDDAELAALI------AEHDIVVDCTDNVEVRNQLNRQCFAAKVPLVSGAA  147 (240)
T ss_pred             cCCHHHHHHHh------hcCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEe
Confidence                1234455      389999999854 4445566889999999997653

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=96.88  E-value=0.014  Score=50.26  Aligned_cols=111  Identities=16%  Similarity=0.169  Sum_probs=63.9

Q ss_pred             cccccccccccceeeecc-CC-C---CCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCC
Q 031216           11 RMHHISQNVKAKRFISCS-TN-P---PQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQP   85 (163)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~-~~-~---~~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~   85 (163)
                      |++-..|.++.-.|-... .. +   .-.-.++||+| +|++|+.+++.+. -=++++.. .++... ....+      .
T Consensus       117 ~~~~~~~~~r~g~w~~~~~~~~~~~~~l~gktvGIiG-~GrIG~avA~r~~-~Fgm~v~y-~~~~~~-~~~~~------~  186 (324)
T COG1052         117 RIHEGDRRVREGNWSLSGGPDPLLGFDLRGKTLGIIG-LGRIGQAVARRLK-GFGMKVLY-YDRSPN-PEAEK------E  186 (324)
T ss_pred             chHHHHHHHhcCcccccCCcccccccCCCCCEEEEEC-CCHHHHHHHHHHh-cCCCEEEE-ECCCCC-hHHHh------h
Confidence            344455666666665553 11 1   11237899999 8999999999987 66888875 454321 11111      1


Q ss_pred             CCcceeCCHHHHHhcccccCCccEEEEccC--chhH-HHHHHHHHHcCCcEEEeCC
Q 031216           86 LEIPVMSDLTMVLGSISQSKARAVVIDFTD--ASTV-YDNVKQATAFGMRSVVYVP  138 (163)
Q Consensus        86 ~gi~v~~~l~ell~~~~~~~~~DVVIDfT~--p~~~-~~~~~~al~~G~~vVigtt  138 (163)
                      .+.. |-++++++.      +.|+|+...+  |+.. .=+.+.....+..+++=.|
T Consensus       187 ~~~~-y~~l~ell~------~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNt  235 (324)
T COG1052         187 LGAR-YVDLDELLA------ESDIISLHCPLTPETRHLINAEELAKMKPGAILVNT  235 (324)
T ss_pred             cCce-eccHHHHHH------hCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEEC
Confidence            2223 445999996      8999886653  3332 2222333344444443344

>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related

Probab=96.83  E-value=0.0085  Score=49.53  Aligned_cols=116  Identities=16%  Similarity=0.195  Sum_probs=77.2

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhhccCCCCC-------------CcceeCCHH
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMVCDMEQPL-------------EIPVMSDLT   95 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~-----~~g~~~~~l~g~~~~~-------------gi~v~~~l~   95 (163)
                      +-.||+|-| .|++|+..++.+.+ .+..++++.|+.     +.|.|..++..+....             +...+++-+
T Consensus        31 ~g~~v~IqG-fG~VG~~~a~~l~~-~Ga~vv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  108 (244)
T PF00208_consen   31 EGKRVAIQG-FGNVGSHAARFLAE-LGAKVVAVSDSSGAIYDPDGLDVEELLRIKEERGSRVDDYPLESPDGAEYIPNDD  108 (244)
T ss_dssp             TTCEEEEEE-SSHHHHHHHHHHHH-TTEEEEEEEESSEEEEETTEEHHHHHHHHHHHHSSHSTTGTHTCSSTSEEECHHC
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHH-cCCEEEEEecCceEEEcCCCchHHHHHHHHHHhCCcccccccccccceeEecccc
Confidence            348999999 69999999999885 499999998843     4465655554321011             111222223


Q ss_pred             HHHhcccccCCccEEEEccCchhH-HHHHHHHHHcCCcEEEeCC--CCCHHHHHHHHHHhhhcCeEEc
Q 031216           96 MVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMVST  160 (163)
Q Consensus        96 ell~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigtt--g~~~e~~~~L~~~A~~~~Vv~t  160 (163)
                      +++.     .++|+++=+..+... .+++..-++.|.++|+|-.  .++++...    .-++.||++-
T Consensus       109 ~il~-----~~~DiliP~A~~~~I~~~~~~~~i~~~akiIvegAN~p~t~~a~~----~L~~rGI~vi  167 (244)
T PF00208_consen  109 EILS-----VDCDILIPCALGNVINEDNAPSLIKSGAKIIVEGANGPLTPEADE----ILRERGILVI  167 (244)
T ss_dssp             HGGT-----SSSSEEEEESSSTSBSCHHHCHCHHTT-SEEEESSSSSBSHHHHH----HHHHTT-EEE
T ss_pred             cccc-----ccccEEEEcCCCCeeCHHHHHHHHhccCcEEEeCcchhccHHHHH----HHHHCCCEEE
Confidence            6775     599999988776666 5677767889999999887  45666543    4455666654

They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....

>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional

Probab=96.83  E-value=0.008  Score=49.66  Aligned_cols=32  Identities=25%  Similarity=0.409  Sum_probs=27.6

Q ss_pred             EEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 031216           38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (163)
Q Consensus        38 V~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~   70 (163)
                      |.|+|++|.+|+.+++.+.+ .+.++++++|+.
T Consensus         2 ilVtGa~GfiG~~l~~~L~~-~g~~~v~~~~~~   33 (308)
T PRK11150          2 IIVTGGAGFIGSNIVKALND-KGITDILVVDNL   33 (308)
T ss_pred             EEEecCCcHHHHHHHHHHHh-CCCceEEEecCC
Confidence            78999999999999999985 478888888864

>PLN02427 UDP-apiose/xylose synthase

Probab=96.83  E-value=0.0074  Score=51.82  Aligned_cols=36  Identities=17%  Similarity=0.119  Sum_probs=30.1

Q ss_pred             CCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 031216           32 PQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (163)
Q Consensus        32 ~~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvi   67 (163)
                      +.+++||.|+|++|.+|+.+++.+.+..+.+++++.
T Consensus        11 ~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~   46 (386)
T PLN02427         11 PIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALD   46 (386)
T ss_pred             cccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEe
Confidence            345689999999999999999999876568888764

>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=96.82  E-value=0.0081  Score=51.54  Aligned_cols=101  Identities=11%  Similarity=0.044  Sum_probs=57.1

Q ss_pred             CCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC-------CCcchhhhc-cCCCCCCcceeCCHHHHHhccccc
Q 031216           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-------VGEDIGMVC-DMEQPLEIPVMSDLTMVLGSISQS  104 (163)
Q Consensus        33 ~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~-------~g~~~~~l~-g~~~~~gi~v~~~l~ell~~~~~~  104 (163)
                      .+|+||+|+| .|.||..++..+.+..  .++....++.       .+.+...+. +..-+.++.+++|+++++.     
T Consensus         5 ~~~mkI~IiG-aGa~G~alA~~La~~g--~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~-----   76 (341)
T PRK12439          5 KREPKVVVLG-GGSWGTTVASICARRG--PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAAN-----   76 (341)
T ss_pred             cCCCeEEEEC-CCHHHHHHHHHHHHCC--CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHh-----
Confidence            4578999999 5999999999988653  2332222110       011111110 1100123456788888774     


Q ss_pred             CCccEEEEccCchhHHHHHHHH---HHcCCcEEEeCCCCCH
Q 031216          105 KARAVVIDFTDASTVYDNVKQA---TAFGMRSVVYVPHIQL  142 (163)
Q Consensus       105 ~~~DVVIDfT~p~~~~~~~~~a---l~~G~~vVigttg~~~  142 (163)
                       .+|+||-++.+....+.+...   +..+.++|+-.-|++.
T Consensus        77 -~aDlVilavps~~~~~vl~~i~~~l~~~~~vIsl~kGi~~  116 (341)
T PRK12439         77 -CADVVVMGVPSHGFRGVLTELAKELRPWVPVVSLVKGLEQ  116 (341)
T ss_pred             -cCCEEEEEeCHHHHHHHHHHHHhhcCCCCEEEEEEeCCcC
Confidence             899988565555544444433   3445556665557754

>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial

Probab=96.79  E-value=0.0074  Score=52.83  Aligned_cols=84  Identities=13%  Similarity=0.028  Sum_probs=53.8

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcE---EEEEEecCCCCcchhhhccCCCCCCcceeCCHHH--HHhcccccCCccEE
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGME---VAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTM--VLGSISQSKARAVV  110 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~e---Lvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~e--ll~~~~~~~~~DVV  110 (163)
                      +||+|+||+|..|+.+++.+.+++++.   +..+.+++..|+.. .+-+    ....+ .++++  .+      .++|++
T Consensus         1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~~~~ss~~s~g~~~-~f~~----~~~~v-~~~~~~~~~------~~vDiv   68 (366)
T TIGR01745         1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFSTSQLGQAAP-SFGG----TTGTL-QDAFDIDAL------KALDII   68 (366)
T ss_pred             CeEEEEcCcCHHHHHHHHHHHhCCCCccccEEEEEchhhCCCcC-CCCC----CcceE-EcCcccccc------cCCCEE
Confidence            489999999999999999998777775   34333333333321 1111    12222 23322  34      389998


Q ss_pred             EEccCchhH-HHHHHHHHHcCCc
Q 031216          111 IDFTDASTV-YDNVKQATAFGMR  132 (163)
Q Consensus       111 IDfT~p~~~-~~~~~~al~~G~~  132 (163)
                      + |+.+... .++...+.++|.+
T Consensus        69 f-fa~g~~~s~~~~p~~~~aG~~   90 (366)
T TIGR01745        69 I-TCQGGDYTNEIYPKLRESGWQ   90 (366)
T ss_pred             E-EcCCHHHHHHHHHHHHhCCCC
Confidence            8 6655554 6888999999964

>PRK06545 prephenate dehydrogenase; Validated

Probab=96.77  E-value=0.03  Score=48.40  Aligned_cols=102  Identities=14%  Similarity=0.161  Sum_probs=57.6

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcc--eeCCHHHHHhcccccCCccEEEEcc
Q 031216           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP--VMSDLTMVLGSISQSKARAVVIDFT  114 (163)
Q Consensus        37 rV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~--v~~~l~ell~~~~~~~~~DVVIDfT  114 (163)
                      ||+|+| +|.||..+++.+.+ .+.++. +++++..........    ..++.  ..+++++++.      ++|+||.++
T Consensus         2 ~I~iIG-~GliG~siA~~L~~-~G~~v~-i~~~~~~~~~~~~a~----~~~~~~~~~~~~~~~~~------~aDlVilav   68 (359)
T PRK06545          2 TVLIVG-LGLIGGSLALAIKA-AGPDVF-IIGYDPSAAQLARAL----GFGVIDELAADLQRAAA------EADLIVLAV   68 (359)
T ss_pred             eEEEEE-eCHHHHHHHHHHHh-cCCCeE-EEEeCCCHHHHHHHh----cCCCCcccccCHHHHhc------CCCEEEEeC
Confidence            699999 79999999999875 455544 344322111111111    11221  2356777764      899999777


Q ss_pred             CchhHHHHHHHHHHc--C-CcEEEeCCCCCHHHHHHHHHH
Q 031216          115 DASTVYDNVKQATAF--G-MRSVVYVPHIQLETVSALSAF  151 (163)
Q Consensus       115 ~p~~~~~~~~~al~~--G-~~vVigttg~~~e~~~~L~~~  151 (163)
                      +|....+.+......  . -.+|+-..+...+..+.+.+.
T Consensus        69 P~~~~~~vl~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~  108 (359)
T PRK06545         69 PVDATAALLAELADLELKPGVIVTDVGSVKGAILAEAEAL  108 (359)
T ss_pred             CHHHHHHHHHHHhhcCCCCCcEEEeCccccHHHHHHHHHh
Confidence            776656665554431  1 234443445555555555554

>COG1832 Predicted CoA-binding protein [General function prediction only]

Probab=96.77  E-value=0.017  Score=44.10  Aligned_cols=94  Identities=15%  Similarity=0.146  Sum_probs=70.5

Q ss_pred             eeEEEEcCCCH---HHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEE
Q 031216           36 IKVIINGAVKE---IGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (163)
Q Consensus        36 irV~VvGa~G~---mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVID  112 (163)
                      .+|+|+|+|-+   -+-.+.+.++ ..|.++.-+ .+...|   .+++      |-++|.|+.++-      +++|+|.-
T Consensus        17 K~IAvVG~S~~P~r~sy~V~kyL~-~~GY~ViPV-NP~~~~---~eiL------G~k~y~sL~dIp------e~IDiVdv   79 (140)
T COG1832          17 KTIAVVGASDKPDRPSYRVAKYLQ-QKGYRVIPV-NPKLAG---EEIL------GEKVYPSLADIP------EPIDIVDV   79 (140)
T ss_pred             ceEEEEecCCCCCccHHHHHHHHH-HCCCEEEee-Ccccch---HHhc------CchhhhcHHhCC------CCCcEEEE
Confidence            57999998865   4555667666 678998854 333333   3444      456889999976      49999888


Q ss_pred             ccCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHH
Q 031216          113 FTDASTVYDNVKQATAFGMRSVVYVPHIQLETVS  146 (163)
Q Consensus       113 fT~p~~~~~~~~~al~~G~~vVigttg~~~e~~~  146 (163)
                      |-.|+.+.++++.+++.|..++=.-.|...++..
T Consensus        80 FR~~e~~~~i~~eal~~~~kv~W~QlGi~n~ea~  113 (140)
T COG1832          80 FRRSEAAPEVAREALEKGAKVVWLQLGIRNEEAA  113 (140)
T ss_pred             ecChhhhHHHHHHHHhhCCCeEEEecCcCCHHHH
Confidence            9999999999999999999999777776444433

>PLN03139 formate dehydrogenase; Provisional

Probab=96.77  E-value=0.01  Score=52.26  Aligned_cols=66  Identities=20%  Similarity=0.111  Sum_probs=46.3

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEc
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDf  113 (163)
                      .-.+|+|+| .|+||+.+++.+. .-|+++.+ +|+...  +.. ..   ...++..++++++++.      ..|+|+..
T Consensus       198 ~gktVGIVG-~G~IG~~vA~~L~-afG~~V~~-~d~~~~--~~~-~~---~~~g~~~~~~l~ell~------~sDvV~l~  262 (386)
T PLN03139        198 EGKTVGTVG-AGRIGRLLLQRLK-PFNCNLLY-HDRLKM--DPE-LE---KETGAKFEEDLDAMLP------KCDVVVIN  262 (386)
T ss_pred             CCCEEEEEe-ecHHHHHHHHHHH-HCCCEEEE-ECCCCc--chh-hH---hhcCceecCCHHHHHh------hCCEEEEe
Confidence            346899999 7999999999997 47899875 675321  111 11   1234555579999985      89998855


Q ss_pred             c
Q 031216          114 T  114 (163)
Q Consensus       114 T  114 (163)
                      .
T Consensus       263 l  263 (386)
T PLN03139        263 T  263 (386)
T ss_pred             C
Confidence            4

>PLN02477 glutamate dehydrogenase

Probab=96.77  E-value=0.018  Score=51.16  Aligned_cols=112  Identities=17%  Similarity=0.145  Sum_probs=73.0

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhhccCCCC-------CCcceeCCHHHHHhcc
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMVCDMEQP-------LEIPVMSDLTMVLGSI  101 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~-----~~g~~~~~l~g~~~~-------~gi~v~~~l~ell~~~  101 (163)
                      +..||+|.| .|++|+.+++.+. ..+.+|+++.|+.     ..|-|+.++......       .+.. .-+.++++.  
T Consensus       205 ~g~~VaIqG-fGnVG~~~A~~L~-e~GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~-~i~~~e~l~--  279 (410)
T PLN02477        205 AGQTFVIQG-FGNVGSWAAQLIH-EKGGKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPGGD-PIDPDDILV--  279 (410)
T ss_pred             cCCEEEEEC-CCHHHHHHHHHHH-HcCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhccccce-EecCcccee--
Confidence            347999999 7999999999886 5799999999953     456676655321100       0111 124566665  


Q ss_pred             cccCCccEEEEccCchhH-HHHHHHHHHcCCcEEEeCC--CCCHHHHHHHHHHhhhcCeEEc
Q 031216          102 SQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMVST  160 (163)
Q Consensus       102 ~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigtt--g~~~e~~~~L~~~A~~~~Vv~t  160 (163)
                         .++||++=+...... .+++.   +-+..+|+|-.  .++++..+.|    ++.||++.
T Consensus       280 ---~~~DvliP~Al~~~I~~~na~---~i~ak~I~egAN~p~t~ea~~~L----~~rGI~~~  331 (410)
T PLN02477        280 ---EPCDVLIPAALGGVINKENAA---DVKAKFIVEAANHPTDPEADEIL----RKKGVVVL  331 (410)
T ss_pred             ---ccccEEeeccccccCCHhHHH---HcCCcEEEeCCCCCCCHHHHHHH----HHCCcEEE
Confidence               599999955543333 34444   35899999877  4566654444    45577764

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=96.76  E-value=0.0083  Score=47.91  Aligned_cols=105  Identities=9%  Similarity=0.172  Sum_probs=61.6

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT  114 (163)
                      .++|+|+| .|+||+.+++.+. ..+.+++ ++|+..  ....++..   ..+.... +.++++.     .++|+++-++
T Consensus        28 gk~v~I~G-~G~vG~~~A~~L~-~~G~~Vv-v~D~~~--~~~~~~~~---~~g~~~v-~~~~l~~-----~~~Dv~vp~A   93 (200)
T cd01075          28 GKTVAVQG-LGKVGYKLAEHLL-EEGAKLI-VADINE--EAVARAAE---LFGATVV-APEEIYS-----VDADVFAPCA   93 (200)
T ss_pred             CCEEEEEC-CCHHHHHHHHHHH-HCCCEEE-EEcCCH--HHHHHHHH---HcCCEEE-cchhhcc-----ccCCEEEecc
Confidence            36899999 6999999999987 4689999 677542  12222211   2233333 3456664     4899988444


Q ss_pred             CchhH-HHHHHHHHHcCCcEEEeCC--CCC-HHHHHHHHHHhhhcCeEEc
Q 031216          115 DASTV-YDNVKQATAFGMRSVVYVP--HIQ-LETVSALSAFCDKASMVST  160 (163)
Q Consensus       115 ~p~~~-~~~~~~al~~G~~vVigtt--g~~-~e~~~~L~~~A~~~~Vv~t  160 (163)
                      .-... .+.+   .+-+.++|++..  .++ ++.    .+.-++.||+|-
T Consensus        94 ~~~~I~~~~~---~~l~~~~v~~~AN~~~~~~~~----~~~L~~~Gi~~~  136 (200)
T cd01075          94 LGGVINDDTI---PQLKAKAIAGAANNQLADPRH----GQMLHERGILYA  136 (200)
T ss_pred             cccccCHHHH---HHcCCCEEEECCcCccCCHhH----HHHHHHCCCEEe
Confidence            32222 2333   234577787765  244 333    333455566663

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase

Probab=96.76  E-value=0.0095  Score=48.45  Aligned_cols=58  Identities=21%  Similarity=0.268  Sum_probs=40.3

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc
Q 031216           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (163)
Q Consensus        37 rV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT  114 (163)
                      ||.|+|++|.+|+.+++.+.+ .+.++.++..+ .     .++         .-.+++++++..    .++|+||++.
T Consensus         1 kilv~G~tG~iG~~l~~~l~~-~g~~v~~~~r~-~-----~d~---------~~~~~~~~~~~~----~~~d~vi~~a   58 (287)
T TIGR01214         1 RILITGANGQLGRELVQQLSP-EGRVVVALTSS-Q-----LDL---------TDPEALERLLRA----IRPDAVVNTA   58 (287)
T ss_pred             CEEEEcCCCHHHHHHHHHHHh-cCCEEEEeCCc-c-----cCC---------CCHHHHHHHHHh----CCCCEEEECC
Confidence            689999999999999999885 58888765332 1     111         112355666653    4689999876

This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.73  E-value=0.012  Score=48.78  Aligned_cols=102  Identities=16%  Similarity=0.204  Sum_probs=56.3

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcc---------hhhhc--c-CC------CCCCcceeCCHHH
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGED---------IGMVC--D-ME------QPLEIPVMSDLTM   96 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~---------~~~l~--g-~~------~~~gi~v~~~l~e   96 (163)
                      +.||+|+| .|.||..++..+... +.+++. +|.+....+         ...+.  + +.      ...++.+++++++
T Consensus         3 ~~kI~VIG-~G~mG~~ia~~la~~-g~~V~~-~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~~   79 (282)
T PRK05808          3 IQKIGVIG-AGTMGNGIAQVCAVA-GYDVVM-VDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDD   79 (282)
T ss_pred             ccEEEEEc-cCHHHHHHHHHHHHC-CCceEE-EeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH
Confidence            45899999 599999999998754 788775 564311000         00111  0 00      0013445677765


Q ss_pred             HHhcccccCCccEEEEccCchhH-----HHHHHHHHHcCCcEEEeCCCCCHHHHH
Q 031216           97 VLGSISQSKARAVVIDFTDASTV-----YDNVKQATAFGMRSVVYVPHIQLETVS  146 (163)
Q Consensus        97 ll~~~~~~~~~DVVIDfT~p~~~-----~~~~~~al~~G~~vVigttg~~~e~~~  146 (163)
                       +      .++|+||.+..++..     ..-+...+..+..+++-|.+++..+..
T Consensus        80 -~------~~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~~la  127 (282)
T PRK05808         80 -L------KDADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLSITELA  127 (282)
T ss_pred             -h------ccCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHH
Confidence             3      389999977654322     222333334455554555577655433

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=96.73  E-value=0.029  Score=49.30  Aligned_cols=30  Identities=27%  Similarity=0.449  Sum_probs=24.0

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~   69 (163)
                      |||+|+| +|+||..++..+. . +.+++ ++|.
T Consensus         1 mkI~VIG-lGyvGl~~A~~lA-~-G~~Vi-gvD~   30 (388)
T PRK15057          1 MKITISG-TGYVGLSNGLLIA-Q-NHEVV-ALDI   30 (388)
T ss_pred             CEEEEEC-CCHHHHHHHHHHH-h-CCcEE-EEEC
Confidence            4899999 7999999997665 3 78877 4674

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=96.73  E-value=0.0072  Score=51.27  Aligned_cols=81  Identities=22%  Similarity=0.244  Sum_probs=48.6

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcc--eeCCHHHHHhcccccCCccEEE
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP--VMSDLTMVLGSISQSKARAVVI  111 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~--v~~~l~ell~~~~~~~~~DVVI  111 (163)
                      ...||+|+| .|.||+.+++.+.. .+..-+.+++++.  .+..++..   ..+..  .++++.+.+.      ++|+||
T Consensus       177 ~~~~V~ViG-aG~iG~~~a~~L~~-~g~~~V~v~~r~~--~ra~~la~---~~g~~~~~~~~~~~~l~------~aDvVi  243 (311)
T cd05213         177 KGKKVLVIG-AGEMGELAAKHLAA-KGVAEITIANRTY--ERAEELAK---ELGGNAVPLDELLELLN------EADVVI  243 (311)
T ss_pred             cCCEEEEEC-cHHHHHHHHHHHHH-cCCCEEEEEeCCH--HHHHHHHH---HcCCeEEeHHHHHHHHh------cCCEEE
Confidence            347899999 59999999999875 5555566777643  12222221   12222  2345566653      799999


Q ss_pred             EccCchhHHHHHHHHH
Q 031216          112 DFTDASTVYDNVKQAT  127 (163)
Q Consensus       112 DfT~p~~~~~~~~~al  127 (163)
                      .+|......+.....+
T Consensus       244 ~at~~~~~~~~~~~~~  259 (311)
T cd05213         244 SATGAPHYAKIVERAM  259 (311)
T ss_pred             ECCCCCchHHHHHHHH
Confidence            8875444333334333

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]

Probab=96.72  E-value=0.034  Score=46.45  Aligned_cols=120  Identities=13%  Similarity=0.121  Sum_probs=69.6

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEc
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDf  113 (163)
                      ++++|.|+|++ .=++.+++.+...+...++.....  .|.+..+..+-....|-.=..-+-+.+.    +.++|+|||.
T Consensus         1 ~~~~ilvlGGT-~Dar~la~~L~~~~~~~~~ss~t~--~g~~l~~~~~~~~~~G~l~~e~l~~~l~----e~~i~llIDA   73 (257)
T COG2099           1 SMMRILLLGGT-SDARALAKKLAAAPVDIILSSLTG--YGAKLAEQIGPVRVGGFLGAEGLAAFLR----EEGIDLLIDA   73 (257)
T ss_pred             CCceEEEEecc-HHHHHHHHHhhccCccEEEEEccc--ccccchhccCCeeecCcCCHHHHHHHHH----HcCCCEEEEC
Confidence            36889999964 668999999998885555433321  1222121110000000000123344555    4899999999


Q ss_pred             cCchhH---HHHHHHHHHcCCcEE-EeCCCCCH--------HHHHHHHHHhhh--cCeEEc
Q 031216          114 TDASTV---YDNVKQATAFGMRSV-VYVPHIQL--------ETVSALSAFCDK--ASMVST  160 (163)
Q Consensus       114 T~p~~~---~~~~~~al~~G~~vV-igttg~~~--------e~~~~L~~~A~~--~~Vv~t  160 (163)
                      |+|-+.   ..-++.|.+.|++.+ .+-|++..        .+.+++.+++++  ..|++|
T Consensus        74 THPyAa~iS~Na~~aake~gipy~r~eRP~~~~~gd~~~~V~d~~ea~~~~~~~~~rVflt  134 (257)
T COG2099          74 THPYAARISQNAARAAKETGIPYLRLERPPWAPNGDNWIEVADIEEAAEAAKQLGRRVFLT  134 (257)
T ss_pred             CChHHHHHHHHHHHHHHHhCCcEEEEECCccccCCCceEEecCHHHHHHHHhccCCcEEEe
Confidence            999776   345588899999988 33443322        445566666665  345554

>PLN00016 RNA-binding protein; Provisional

Probab=96.72  E-value=0.01  Score=51.05  Aligned_cols=95  Identities=19%  Similarity=0.171  Sum_probs=57.7

Q ss_pred             CCeeEEEE----cCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcch-----hhhccCCCCCCcc-eeCCHH---HHHhc
Q 031216           34 SNIKVIIN----GAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDI-----GMVCDMEQPLEIP-VMSDLT---MVLGS  100 (163)
Q Consensus        34 ~~irV~Vv----Ga~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~-----~~l~g~~~~~gi~-v~~~l~---ell~~  100 (163)
                      ++.||.|+    |++|.+|+.+++.+.+ .+.++.++..+.......     ..+..+. ..++. +..|+.   +++. 
T Consensus        51 ~~~~VLVt~~~~GatG~iG~~lv~~L~~-~G~~V~~l~R~~~~~~~~~~~~~~~~~~l~-~~~v~~v~~D~~d~~~~~~-  127 (378)
T PLN00016         51 EKKKVLIVNTNSGGHAFIGFYLAKELVK-AGHEVTLFTRGKEPSQKMKKEPFSRFSELS-SAGVKTVWGDPADVKSKVA-  127 (378)
T ss_pred             ccceEEEEeccCCCceeEhHHHHHHHHH-CCCEEEEEecCCcchhhhccCchhhhhHhh-hcCceEEEecHHHHHhhhc-
Confidence            45789999    9999999999999885 589999877643211000     0000000 12233 234554   3443 


Q ss_pred             ccccCCccEEEEccCc--hhHHHHHHHHHHcCC-cEE
Q 031216          101 ISQSKARAVVIDFTDA--STVYDNVKQATAFGM-RSV  134 (163)
Q Consensus       101 ~~~~~~~DVVIDfT~p--~~~~~~~~~al~~G~-~vV  134 (163)
                         ...+|+||++...  ......+++|.+.|+ ++|
T Consensus       128 ---~~~~d~Vi~~~~~~~~~~~~ll~aa~~~gvkr~V  161 (378)
T PLN00016        128 ---GAGFDVVYDNNGKDLDEVEPVADWAKSPGLKQFL  161 (378)
T ss_pred             ---cCCccEEEeCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence               2579999987632  334566677777887 455

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.71  E-value=0.018  Score=48.30  Aligned_cols=102  Identities=12%  Similarity=0.157  Sum_probs=57.8

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcc---------hhhhccCC---------CCCCcceeCCHHH
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGED---------IGMVCDME---------QPLEIPVMSDLTM   96 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~---------~~~l~g~~---------~~~gi~v~~~l~e   96 (163)
                      +-||+|+| .|.||+.++..+. ..|.+++ ++|......+         ...+....         ....+.+.+|+++
T Consensus         5 ~~~V~ViG-aG~mG~~iA~~~a-~~G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~   81 (286)
T PRK07819          5 IQRVGVVG-AGQMGAGIAEVCA-RAGVDVL-VFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDLGD   81 (286)
T ss_pred             ccEEEEEc-ccHHHHHHHHHHH-hCCCEEE-EEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCHHH
Confidence            45899999 5999999999887 5689877 5664321100         00111100         0012335678854


Q ss_pred             HHhcccccCCccEEEEccCchhH------HHHHHHHH-HcCCcEEEeCCCCCHHHHHH
Q 031216           97 VLGSISQSKARAVVIDFTDASTV------YDNVKQAT-AFGMRSVVYVPHIQLETVSA  147 (163)
Q Consensus        97 ll~~~~~~~~~DVVIDfT~p~~~------~~~~~~al-~~G~~vVigttg~~~e~~~~  147 (163)
                       +      .++|+||++- |+..      ...+...+ ..+..+++-|+.++..+...
T Consensus        82 -~------~~~d~ViEav-~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~la~  131 (286)
T PRK07819         82 -F------ADRQLVIEAV-VEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKLAA  131 (286)
T ss_pred             -h------CCCCEEEEec-ccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHh
Confidence             4      3899999775 3332      22333334 45566666566776655443

>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family

Probab=96.70  E-value=0.015  Score=47.59  Aligned_cols=94  Identities=11%  Similarity=0.044  Sum_probs=51.8

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCC-CCCCcceeCCHHHHHhcccccCC-ccEEEEcc
Q 031216           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDME-QPLEIPVMSDLTMVLGSISQSKA-RAVVIDFT  114 (163)
Q Consensus        37 rV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~-~~~gi~v~~~l~ell~~~~~~~~-~DVVIDfT  114 (163)
                      ||.|+|++|.+|+.+++.+.+ .+.++.++..+.....    ..+.. ...+..=.+++++++.....-.. +|.|+.++
T Consensus         1 ~ilVtGatG~iG~~vv~~L~~-~g~~V~~~~R~~~~~~----~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~~~~   75 (285)
T TIGR03649         1 TILLTGGTGKTASRIARLLQA-ASVPFLVASRSSSSSA----GPNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAVYLVA   75 (285)
T ss_pred             CEEEEcCCChHHHHHHHHHHh-CCCcEEEEeCCCcccc----CCCCccccccCCCHHHHHHHHhcccCcCCceeEEEEeC
Confidence            589999999999999999874 5889887766432100    00110 00011101334444420000014 88887655


Q ss_pred             Cc-----hhHHHHHHHHHHcCCcEEE
Q 031216          115 DA-----STVYDNVKQATAFGMRSVV  135 (163)
Q Consensus       115 ~p-----~~~~~~~~~al~~G~~vVi  135 (163)
                      .+     ......+.+|.++|+.-|+
T Consensus        76 ~~~~~~~~~~~~~i~aa~~~gv~~~V  101 (285)
T TIGR03649        76 PPIPDLAPPMIKFIDFARSKGVRRFV  101 (285)
T ss_pred             CCCCChhHHHHHHHHHHHHcCCCEEE
Confidence            32     1234566788889975444

This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.

>PRK06141 ornithine cyclodeaminase; Validated

Probab=96.68  E-value=0.0029  Score=53.81  Aligned_cols=90  Identities=10%  Similarity=0.102  Sum_probs=56.0

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCC--CCcceeCCHHHHHhcccccCCccEEEE
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQP--LEIPVMSDLTMVLGSISQSKARAVVID  112 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~--~gi~v~~~l~ell~~~~~~~~~DVVID  112 (163)
                      ..+|+|+| +|.||+.+++.+....+.+=+-+.+++.  .+..++...-..  ..+.+++++++++.      +.|+|+-
T Consensus       125 ~~~v~iiG-~G~~a~~~~~al~~~~~~~~V~V~~Rs~--~~a~~~a~~~~~~g~~~~~~~~~~~av~------~aDIVi~  195 (314)
T PRK06141        125 ASRLLVVG-TGRLASLLALAHASVRPIKQVRVWGRDP--AKAEALAAELRAQGFDAEVVTDLEAAVR------QADIISC  195 (314)
T ss_pred             CceEEEEC-CcHHHHHHHHHHHhcCCCCEEEEEcCCH--HHHHHHHHHHHhcCCceEEeCCHHHHHh------cCCEEEE
Confidence            36899999 6999999998777645555555777642  122222211001  13556789998874      8999986


Q ss_pred             ccCchhHHHHH-HHHHHcCCcEEE
Q 031216          113 FTDASTVYDNV-KQATAFGMRSVV  135 (163)
Q Consensus       113 fT~p~~~~~~~-~~al~~G~~vVi  135 (163)
                      +|...  .+.+ ...++.|.++.+
T Consensus       196 aT~s~--~pvl~~~~l~~g~~i~~  217 (314)
T PRK06141        196 ATLST--EPLVRGEWLKPGTHLDL  217 (314)
T ss_pred             eeCCC--CCEecHHHcCCCCEEEe
Confidence            65432  1212 245678887654

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=96.67  E-value=0.0092  Score=48.15  Aligned_cols=95  Identities=21%  Similarity=0.276  Sum_probs=57.2

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC-----CCc------chh--------hhc-cCCCCCCccee---
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-----VGE------DIG--------MVC-DMEQPLEIPVM---   91 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~-----~g~------~~~--------~l~-g~~~~~gi~v~---   91 (163)
                      ..||+|+| .|.+|..+++.+.. .|+.=..++|.+.     .++      +++        +.+ .+.....+..+   
T Consensus        28 ~~~V~ViG-~GglGs~ia~~La~-~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~lnp~v~v~~~~~~  105 (212)
T PRK08644         28 KAKVGIAG-AGGLGSNIAVALAR-SGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEINPFVEIEAHNEK  105 (212)
T ss_pred             CCCEEEEC-cCHHHHHHHHHHHH-cCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHCCCCEEEEEeee
Confidence            46899999 59999999999974 5777666788431     010      000        000 00001112111   


Q ss_pred             ---CCHHHHHhcccccCCccEEEEccC-chhHHHHHHHHHHc-CCcEEEeC
Q 031216           92 ---SDLTMVLGSISQSKARAVVIDFTD-ASTVYDNVKQATAF-GMRSVVYV  137 (163)
Q Consensus        92 ---~~l~ell~~~~~~~~~DVVIDfT~-p~~~~~~~~~al~~-G~~vVigt  137 (163)
                         .++++.+      .++|+|||++. ++.-......|.+. ++|+|.+.
T Consensus       106 i~~~~~~~~~------~~~DvVI~a~D~~~~r~~l~~~~~~~~~~p~I~~~  150 (212)
T PRK08644        106 IDEDNIEELF------KDCDIVVEAFDNAETKAMLVETVLEHPGKKLVAAS  150 (212)
T ss_pred             cCHHHHHHHH------cCCCEEEECCCCHHHHHHHHHHHHHhCCCCEEEee
Confidence               1233455      38999999974 44435566788888 99999763

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=96.67  E-value=0.012  Score=52.95  Aligned_cols=101  Identities=15%  Similarity=0.106  Sum_probs=58.8

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCC-cchhhh-----------cc--CCCCCCcceeCCHHHHHhcc
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG-EDIGMV-----------CD--MEQPLEIPVMSDLTMVLGSI  101 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g-~~~~~l-----------~g--~~~~~gi~v~~~l~ell~~~  101 (163)
                      +||+|+| +|.||..++..+.. .|+++. +.|+.... ....+.           .+  ......+.+.+|+++++.  
T Consensus         5 ~kIavIG-~G~MG~~iA~~la~-~G~~V~-v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~--   79 (495)
T PRK07531          5 MKAACIG-GGVIGGGWAARFLL-AGIDVA-VFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVA--   79 (495)
T ss_pred             CEEEEEC-cCHHHHHHHHHHHh-CCCeEE-EEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhc--
Confidence            4899999 69999999999874 588876 67753211 111100           00  000112566789988874  


Q ss_pred             cccCCccEEEEccCchhH-HH----HHHHHHHcCCcEEEeCCCCCHHHH
Q 031216          102 SQSKARAVVIDFTDASTV-YD----NVKQATAFGMRSVVYVPHIQLETV  145 (163)
Q Consensus       102 ~~~~~~DVVIDfT~p~~~-~~----~~~~al~~G~~vVigttg~~~e~~  145 (163)
                          ++|+|+....+... ..    -+...+..+.-+.+-|.+++..+.
T Consensus        80 ----~aD~Vieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~~s~l  124 (495)
T PRK07531         80 ----GADWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPSDL  124 (495)
T ss_pred             ----CCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHH
Confidence                89999976644432 22    223333444445555557775543

>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional

Probab=96.67  E-value=0.038  Score=49.74  Aligned_cols=116  Identities=13%  Similarity=0.123  Sum_probs=77.2

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhh---ccCC-----------C-CCCcceeCC
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMV---CDME-----------Q-PLEIPVMSD   93 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~-----~~g~~~~~l---~g~~-----------~-~~gi~v~~~   93 (163)
                      +..||+|-| +|++|+..++.+. ..|.+++++.|+.     +.|-|..++   ....           . ..+... -+
T Consensus       236 ~Gk~VaVqG-~GnVg~~aa~~L~-e~GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~~~~~a~~-~~  312 (454)
T PTZ00079        236 EGKTVVVSG-SGNVAQYAVEKLL-QLGAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKHSSTAKY-VP  312 (454)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHH-HCCCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhhccCCcEE-eC
Confidence            347999999 7999999999987 5799999999953     456655443   1000           0 012222 23


Q ss_pred             HHHHHhcccccCCccEEEEccCchhH-HHHHHHHHHcCCcEEEeCC--CCCHHHHHHHHHHhhhcCeEEcC
Q 031216           94 LTMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMVSTG  161 (163)
Q Consensus        94 l~ell~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigtt--g~~~e~~~~L~~~A~~~~Vv~tg  161 (163)
                      .++++.     .++||++=+.+.+.. .+++....+.+..+|+|-.  ..+++..+.|    ++.+|++.+
T Consensus       313 ~~~~~~-----~~cDI~iPcA~~n~I~~~~a~~l~~~~ak~V~EgAN~p~t~eA~~~L----~~~GI~~~P  374 (454)
T PTZ00079        313 GKKPWE-----VPCDIAFPCATQNEINLEDAKLLIKNGCKLVAEGANMPTTIEATHLF----KKNGVIFCP  374 (454)
T ss_pred             CcCccc-----CCccEEEeccccccCCHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH----HHCCcEEEC
Confidence            455554     589999966655444 6788888899999999877  3455543333    555777754

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=96.66  E-value=0.016  Score=50.33  Aligned_cols=92  Identities=22%  Similarity=0.162  Sum_probs=58.5

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCccee---CCHHHHHhcccccCCccEEEE
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM---SDLTMVLGSISQSKARAVVID  112 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~---~~l~ell~~~~~~~~~DVVID  112 (163)
                      -+|+|+|+ |.+|...++.+.. -+.+++++-.+...-+++.++ |.    +..+.   .+.-+.+.     ..+|++||
T Consensus       168 ~~V~I~G~-GGlGh~avQ~Aka-~ga~Via~~~~~~K~e~a~~l-GA----d~~i~~~~~~~~~~~~-----~~~d~ii~  235 (339)
T COG1064         168 KWVAVVGA-GGLGHMAVQYAKA-MGAEVIAITRSEEKLELAKKL-GA----DHVINSSDSDALEAVK-----EIADAIID  235 (339)
T ss_pred             CEEEEECC-cHHHHHHHHHHHH-cCCeEEEEeCChHHHHHHHHh-CC----cEEEEcCCchhhHHhH-----hhCcEEEE
Confidence            47999995 9999988888764 459999765443211222222 21    11111   12223332     24999999


Q ss_pred             ccCchhHHHHHHHHHHcCCcEEEeCCC
Q 031216          113 FTDASTVYDNVKQATAFGMRSVVYVPH  139 (163)
Q Consensus       113 fT~p~~~~~~~~~al~~G~~vVigttg  139 (163)
                      +..+....++++.....|.-+++|-++
T Consensus       236 tv~~~~~~~~l~~l~~~G~~v~vG~~~  262 (339)
T COG1064         236 TVGPATLEPSLKALRRGGTLVLVGLPG  262 (339)
T ss_pred             CCChhhHHHHHHHHhcCCEEEEECCCC
Confidence            988666667777777788888888874

>KOG0455 consensus Homoserine dehydrogenase [Amino acid transport and metabolism]

Probab=96.64  E-value=0.024  Score=47.89  Aligned_cols=122  Identities=15%  Similarity=0.243  Sum_probs=75.8

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCC--------cEEEEEEecC--CCCcch------hhhcc-CCCCCCcceeCCHHH
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARG--------MEVAGAIDSH--SVGEDI------GMVCD-MEQPLEIPVMSDLTM   96 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~--------~eLvgvid~~--~~g~~~------~~l~g-~~~~~gi~v~~~l~e   96 (163)
                      +.++|+++| +|.+|+.+++.+.....        +.+++++|..  ...+|.      .++.. +....+ .. -++++
T Consensus         2 k~vnVa~~G-~G~vG~~lL~qi~~~~s~~~~~tv~~nvv~v~~~e~~~~skD~~p~nl~sewk~~L~~st~-~a-lsLda   78 (364)
T KOG0455|consen    2 KKVNVALMG-CGGVGRHLLQQIVSCRSLHAKMTVHINVVGVCDSESLVASKDVLPENLNSEWKSELIKSTG-SA-LSLDA   78 (364)
T ss_pred             ccccEEEEe-ccchHHHHHHHHHHHhhhhccCceEEEEEEEecccccccccccChhhhchHHHHHHHHhcC-Cc-ccHHH
Confidence            358899999 69999999998876544        6889999842  111221      11110 000111 11 24666


Q ss_pred             HHhcccccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeCC-CCC--HHHHHHHHHHhhhcCeE
Q 031216           97 VLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQ--LETVSALSAFCDKASMV  158 (163)
Q Consensus        97 ll~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigtt-g~~--~e~~~~L~~~A~~~~Vv  158 (163)
                      +++.+.-.+.+-+++|.|......+.....++.|+.++.-.. .++  .+..+.|....+..+.+
T Consensus        79 Lia~L~~sp~p~ilVDntaS~~ia~~y~Kfv~~gi~IatpNKKafss~l~~y~~l~~~~~s~~fi  143 (364)
T KOG0455|consen   79 LIAKLLGSPTPLILVDNTASMEIAEIYMKFVDLGICIATPNKKAFSSTLEHYDKLALHSKSPRFI  143 (364)
T ss_pred             HHHHHcCCCCceEEEecccHHHHHHHHHHHHhcCceEecCCcccccccHHHHHHHHhcCCCCceE
Confidence            665444446788999999888888989999999999764332 453  45555555544434443

>PRK07574 formate dehydrogenase; Provisional

Probab=96.64  E-value=0.024  Score=49.92  Aligned_cols=104  Identities=16%  Similarity=0.114  Sum_probs=60.9

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT  114 (163)
                      -.+|+|+| .|+||+.+++.+. .-++++.+ +|+.....+...      ..++..+.++++++.      ..|+|+...
T Consensus       192 gktVGIvG-~G~IG~~vA~~l~-~fG~~V~~-~dr~~~~~~~~~------~~g~~~~~~l~ell~------~aDvV~l~l  256 (385)
T PRK07574        192 GMTVGIVG-AGRIGLAVLRRLK-PFDVKLHY-TDRHRLPEEVEQ------ELGLTYHVSFDSLVS------VCDVVTIHC  256 (385)
T ss_pred             CCEEEEEC-CCHHHHHHHHHHH-hCCCEEEE-ECCCCCchhhHh------hcCceecCCHHHHhh------cCCEEEEcC
Confidence            36899999 7999999999987 46888874 564321111111      234444679999985      899988554


Q ss_pred             C--chhH---HHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhh
Q 031216          115 D--ASTV---YDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDK  154 (163)
Q Consensus       115 ~--p~~~---~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~  154 (163)
                      +  |+..   .+.....++.|.-+|--..|--- +.+.|.++.+.
T Consensus       257 Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~iV-De~AL~~AL~s  300 (385)
T PRK07574        257 PLHPETEHLFDADVLSRMKRGSYLVNTARGKIV-DRDAVVRALES  300 (385)
T ss_pred             CCCHHHHHHhCHHHHhcCCCCcEEEECCCCchh-hHHHHHHHHHh
Confidence            2  2211   12334456666554432223322 23445555444

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=96.63  E-value=0.0027  Score=49.50  Aligned_cols=86  Identities=22%  Similarity=0.153  Sum_probs=51.5

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEc
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDf  113 (163)
                      ...+|+|+| +|++|+.+++.+. .=|+++.+ +|+...  +.....    ..++ -+.++++++.      ..|+|+..
T Consensus        35 ~g~tvgIiG-~G~IG~~vA~~l~-~fG~~V~~-~d~~~~--~~~~~~----~~~~-~~~~l~ell~------~aDiv~~~   98 (178)
T PF02826_consen   35 RGKTVGIIG-YGRIGRAVARRLK-AFGMRVIG-YDRSPK--PEEGAD----EFGV-EYVSLDELLA------QADIVSLH   98 (178)
T ss_dssp             TTSEEEEES-TSHHHHHHHHHHH-HTT-EEEE-EESSCH--HHHHHH----HTTE-EESSHHHHHH------H-SEEEE-
T ss_pred             CCCEEEEEE-EcCCcCeEeeeee-cCCceeEE-ecccCC--hhhhcc----cccc-eeeehhhhcc------hhhhhhhh
Confidence            357999999 7999999999987 56888885 554321  111011    2233 3579999996      89998855


Q ss_pred             cC--chh---HHHHHHHHHHcCCcEEE
Q 031216          114 TD--AST---VYDNVKQATAFGMRSVV  135 (163)
Q Consensus       114 T~--p~~---~~~~~~~al~~G~~vVi  135 (163)
                      .+  |+.   ..+.....++.|.-+|-
T Consensus        99 ~plt~~T~~li~~~~l~~mk~ga~lvN  125 (178)
T PF02826_consen   99 LPLTPETRGLINAEFLAKMKPGAVLVN  125 (178)
T ss_dssp             SSSSTTTTTSBSHHHHHTSTTTEEEEE
T ss_pred             hccccccceeeeeeeeeccccceEEEe
Confidence            42  222   12344445555654444

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PRK08818 prephenate dehydrogenase; Provisional

Probab=96.63  E-value=0.02  Score=50.12  Aligned_cols=70  Identities=21%  Similarity=0.144  Sum_probs=47.9

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT  114 (163)
                      ..||+|+|.+|.||+.+++.+.+..+.++.| +|+...+                 ..++++.+.      ++|+||.++
T Consensus         4 ~~~I~IIGl~GliGgslA~alk~~~~~~V~g-~D~~d~~-----------------~~~~~~~v~------~aDlVilav   59 (370)
T PRK08818          4 QPVVGIVGSAGAYGRWLARFLRTRMQLEVIG-HDPADPG-----------------SLDPATLLQ------RADVLIFSA   59 (370)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcCCCEEEE-EcCCccc-----------------cCCHHHHhc------CCCEEEEeC
Confidence            3689999944999999999998656888775 5642110                 134555553      788888666


Q ss_pred             CchhHHHHHHHHHH
Q 031216          115 DASTVYDNVKQATA  128 (163)
Q Consensus       115 ~p~~~~~~~~~al~  128 (163)
                      ++....+.+.....
T Consensus        60 Pv~~~~~~l~~l~~   73 (370)
T PRK08818         60 PIRHTAALIEEYVA   73 (370)
T ss_pred             CHHHHHHHHHHHhh
Confidence            66666666665554

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=96.63  E-value=0.014  Score=43.25  Aligned_cols=96  Identities=16%  Similarity=0.242  Sum_probs=53.8

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCC-cchhh-------hccCC-------------CCCCccee--
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG-EDIGM-------VCDME-------------QPLEIPVM--   91 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g-~~~~~-------l~g~~-------------~~~gi~v~--   91 (163)
                      ..||+|+| +|.+|..+++.+.. .|+.=.-++|.+... .++.-       -.|..             ....+..+  
T Consensus         2 ~~~v~iiG-~G~vGs~va~~L~~-~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~   79 (135)
T PF00899_consen    2 NKRVLIIG-AGGVGSEVAKNLAR-SGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPE   79 (135)
T ss_dssp             T-EEEEES-TSHHHHHHHHHHHH-HTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEES
T ss_pred             CCEEEEEC-cCHHHHHHHHHHHH-hCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeec
Confidence            36899999 59999999999984 577666688843110 00000       00110             01111111  


Q ss_pred             ----CCHHHHHhcccccCCccEEEEccCchhH-HHHHHHHHHcCCcEEEeCC
Q 031216           92 ----SDLTMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP  138 (163)
Q Consensus        92 ----~~l~ell~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigtt  138 (163)
                          .+.++++.      ++|+||+++.+... ......|.++++|+|.+.+
T Consensus        80 ~~~~~~~~~~~~------~~d~vi~~~d~~~~~~~l~~~~~~~~~p~i~~~~  125 (135)
T PF00899_consen   80 KIDEENIEELLK------DYDIVIDCVDSLAARLLLNEICREYGIPFIDAGV  125 (135)
T ss_dssp             HCSHHHHHHHHH------TSSEEEEESSSHHHHHHHHHHHHHTT-EEEEEEE
T ss_pred             cccccccccccc------CCCEEEEecCCHHHHHHHHHHHHHcCCCEEEEEe
Confidence                22334443      78888887755444 4555678888888876543

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []

Probab=96.62  E-value=0.016  Score=43.66  Aligned_cols=97  Identities=14%  Similarity=0.120  Sum_probs=60.9

Q ss_pred             EEEEcCCCHHHHHHHHHHHhcC-CcEEEEEEecCCC------------------Ccchh-hhccCC--CCCCcceeCCHH
Q 031216           38 VIINGAVKEIGRAAVIAVTKAR-GMEVAGAIDSHSV------------------GEDIG-MVCDME--QPLEIPVMSDLT   95 (163)
Q Consensus        38 V~VvGa~G~mG~~i~~~i~~~~-~~eLvgvid~~~~------------------g~~~~-~l~g~~--~~~gi~v~~~l~   95 (163)
                      |.|.|+||-+|+..++.+.++| .++++++...+..                  ..+.. .+....  ...++.++...+
T Consensus         1 i~ILGsTGSIG~qtLdVi~~~~d~f~v~~Lsa~~n~~~L~~q~~~f~p~~v~i~~~~~~~~l~~~~~~~~~~~~v~~G~~   80 (129)
T PF02670_consen    1 IAILGSTGSIGTQTLDVIRKHPDKFEVVALSAGSNIEKLAEQAREFKPKYVVIADEEAYEELKKALPSKGPGIEVLSGPE   80 (129)
T ss_dssp             EEEESTTSHHHHHHHHHHHHCTTTEEEEEEEESSTHHHHHHHHHHHT-SEEEESSHHHHHHHHHHHHHTTSSSEEEESHH
T ss_pred             CEEEcCCcHHHHHHHHHHHhCCCceEEEEEEcCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHHhhhcCCCCEEEeChH
Confidence            6899999999999999999988 7999999884311                  00000 000000  123555554443


Q ss_pred             HHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCcEEE
Q 031216           96 MVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVV  135 (163)
Q Consensus        96 ell~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVi  135 (163)
                      .+.+ +.+..++|+|+....=.....-...|+++|+.+-.
T Consensus        81 ~l~~-~~~~~~~D~vv~Ai~G~aGL~pt~~Ai~~gk~iaL  119 (129)
T PF02670_consen   81 GLEE-LAEEPEVDIVVNAIVGFAGLKPTLAAIKAGKDIAL  119 (129)
T ss_dssp             HHHH-HHTHTT-SEEEE--SSGGGHHHHHHHHHTTSEEEE
T ss_pred             HHHH-HhcCCCCCEEEEeCcccchHHHHHHHHHCCCeEEE
Confidence            3221 22247899999665555667888889999999876

In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....

>PLN02778 3,5-epimerase/4-reductase

Probab=96.60  E-value=0.025  Score=47.35  Aligned_cols=34  Identities=18%  Similarity=0.229  Sum_probs=27.6

Q ss_pred             CCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEE
Q 031216           31 PPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAG   65 (163)
Q Consensus        31 ~~~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvg   65 (163)
                      |....+||.|+|++|.+|+.+++.+.+ .+.+++.
T Consensus         5 ~~~~~~kiLVtG~tGfiG~~l~~~L~~-~g~~V~~   38 (298)
T PLN02778          5 AGSATLKFLIYGKTGWIGGLLGKLCQE-QGIDFHY   38 (298)
T ss_pred             CCCCCCeEEEECCCCHHHHHHHHHHHh-CCCEEEE
Confidence            445568999999999999999999875 4677753

>PRK06436 glycerate dehydrogenase; Provisional

Probab=96.59  E-value=0.018  Score=49.02  Aligned_cols=117  Identities=16%  Similarity=0.123  Sum_probs=63.8

Q ss_pred             ccccccceeeeccCCCCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCc-ceeCCH
Q 031216           16 SQNVKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI-PVMSDL   94 (163)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi-~v~~~l   94 (163)
                      .++++..+|-. .....-.-.+|+|+| +|+||+.+++.+. .-|+++.+ +|+...  +          .+. ..+.++
T Consensus       104 ~~~~~~g~w~~-~~~~~L~gktvgIiG-~G~IG~~vA~~l~-afG~~V~~-~~r~~~--~----------~~~~~~~~~l  167 (303)
T PRK06436        104 NYNMKNGNFKQ-SPTKLLYNKSLGILG-YGGIGRRVALLAK-AFGMNIYA-YTRSYV--N----------DGISSIYMEP  167 (303)
T ss_pred             HHHHHcCCCCC-CCCCCCCCCEEEEEC-cCHHHHHHHHHHH-HCCCEEEE-ECCCCc--c----------cCcccccCCH
Confidence            34455555532 111222347899999 7999999999775 45899875 454321  1          111 125689


Q ss_pred             HHHHhcccccCCccEEEEccC--chhH---HHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhc
Q 031216           95 TMVLGSISQSKARAVVIDFTD--ASTV---YDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKA  155 (163)
Q Consensus        95 ~ell~~~~~~~~~DVVIDfT~--p~~~---~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~~  155 (163)
                      ++++.      +.|+|+...+  |+.-   ..-....++.|.-+|--..|--. +.+.|.++.++.
T Consensus       168 ~ell~------~aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN~sRG~~v-d~~aL~~aL~~g  226 (303)
T PRK06436        168 EDIMK------KSDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARADVV-DKNDMLNFLRNH  226 (303)
T ss_pred             HHHHh------hCCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEECCCcccc-CHHHHHHHHHcC
Confidence            99985      8999885442  2211   12233445566544432223222 234455444443

>PRK08328 hypothetical protein; Provisional

Probab=96.59  E-value=0.024  Score=46.18  Aligned_cols=95  Identities=24%  Similarity=0.286  Sum_probs=58.4

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC-----C-------cchhh----------hccCCCCCCcce-
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-----G-------EDIGM----------VCDMEQPLEIPV-   90 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~-----g-------~~~~~----------l~g~~~~~gi~v-   90 (163)
                      +..||+|+| +|..|..+++.+. ..|+.=..++|.+..     +       .+++.          +..+  ..++.+ 
T Consensus        26 ~~~~VlIiG-~GGlGs~ia~~La-~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~--np~v~v~  101 (231)
T PRK08328         26 KKAKVAVVG-VGGLGSPVAYYLA-AAGVGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERF--NSDIKIE  101 (231)
T ss_pred             hCCcEEEEC-CCHHHHHHHHHHH-HcCCCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHh--CCCCEEE
Confidence            346899999 5999999999987 567766667784210     0       11111          0000  112222 


Q ss_pred             -e------CCHHHHHhcccccCCccEEEEccCc-hhHHHHHHHHHHcCCcEEEeCC
Q 031216           91 -M------SDLTMVLGSISQSKARAVVIDFTDA-STVYDNVKQATAFGMRSVVYVP  138 (163)
Q Consensus        91 -~------~~l~ell~~~~~~~~~DVVIDfT~p-~~~~~~~~~al~~G~~vVigtt  138 (163)
                       +      .++++++.      +.|+|||++.. +.-...-..|.++|+|+|.|.+
T Consensus       102 ~~~~~~~~~~~~~~l~------~~D~Vid~~d~~~~r~~l~~~~~~~~ip~i~g~~  151 (231)
T PRK08328        102 TFVGRLSEENIDEVLK------GVDVIVDCLDNFETRYLLDDYAHKKGIPLVHGAV  151 (231)
T ss_pred             EEeccCCHHHHHHHHh------cCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEee
Confidence             1      23445553      89999998844 3334444678999999997654

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=96.59  E-value=0.018  Score=51.11  Aligned_cols=32  Identities=25%  Similarity=0.449  Sum_probs=26.3

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~   69 (163)
                      +++||+|+| +|+||.-++..+.+  +.++++ +|.
T Consensus         5 ~~mkI~vIG-lGyvGlpmA~~la~--~~~V~g-~D~   36 (425)
T PRK15182          5 DEVKIAIIG-LGYVGLPLAVEFGK--SRQVVG-FDV   36 (425)
T ss_pred             CCCeEEEEC-cCcchHHHHHHHhc--CCEEEE-EeC
Confidence            458999999 89999999998764  588875 674

>PLN02166 dTDP-glucose 4,6-dehydratase

Probab=96.58  E-value=0.016  Score=51.50  Aligned_cols=91  Identities=15%  Similarity=0.222  Sum_probs=54.0

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCc--chhhhccCCCCCCcce-eCC-HHHHHhcccccCCccEE
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGE--DIGMVCDMEQPLEIPV-MSD-LTMVLGSISQSKARAVV  110 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~--~~~~l~g~~~~~gi~v-~~~-l~ell~~~~~~~~~DVV  110 (163)
                      .+||.|+|++|.+|+.+++.+.+ .+.+++++ |+...+.  +...+.+   ..++.+ ..| +++.+      .++|+|
T Consensus       120 ~mkILVTGatGFIGs~Lv~~Ll~-~G~~V~~l-dr~~~~~~~~~~~~~~---~~~~~~~~~Di~~~~~------~~~D~V  188 (436)
T PLN02166        120 RLRIVVTGGAGFVGSHLVDKLIG-RGDEVIVI-DNFFTGRKENLVHLFG---NPRFELIRHDVVEPIL------LEVDQI  188 (436)
T ss_pred             CCEEEEECCccHHHHHHHHHHHH-CCCEEEEE-eCCCCccHhHhhhhcc---CCceEEEECccccccc------cCCCEE
Confidence            48999999999999999999885 57898864 4322111  1111111   112211 122 23333      379999


Q ss_pred             EEccC---ch---------------hHHHHHHHHHHcCCcEEEe
Q 031216          111 IDFTD---AS---------------TVYDNVKQATAFGMRSVVY  136 (163)
Q Consensus       111 IDfT~---p~---------------~~~~~~~~al~~G~~vVig  136 (163)
                      |.+..   +.               .....+..|.+.|+++|.-
T Consensus       189 iHlAa~~~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~g~r~V~~  232 (436)
T PLN02166        189 YHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGARFLLT  232 (436)
T ss_pred             EECceeccchhhccCHHHHHHHHHHHHHHHHHHHHHhCCEEEEE
Confidence            98763   11               1234556777788887743

>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional

Probab=96.58  E-value=0.017  Score=48.14  Aligned_cols=86  Identities=16%  Similarity=0.213  Sum_probs=51.8

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEccC
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT~  115 (163)
                      +||.|+|++|.+|+.+++.+.+. + ++++ +++...     .+     ..++.=...++++++.    .++|+||++..
T Consensus         1 m~iLVtG~~GfiGs~l~~~L~~~-g-~V~~-~~~~~~-----~~-----~~Dl~d~~~~~~~~~~----~~~D~Vih~Aa   63 (299)
T PRK09987          1 MNILLFGKTGQVGWELQRALAPL-G-NLIA-LDVHST-----DY-----CGDFSNPEGVAETVRK----IRPDVIVNAAA   63 (299)
T ss_pred             CeEEEECCCCHHHHHHHHHhhcc-C-CEEE-eccccc-----cc-----cCCCCCHHHHHHHHHh----cCCCEEEECCc
Confidence            48999999999999999998754 4 5554 443210     00     0111111244555652    47999998742


Q ss_pred             ----------chh--------HHHHHHHHHHcCCcEEEeCC
Q 031216          116 ----------AST--------VYDNVKQATAFGMRSVVYVP  138 (163)
Q Consensus       116 ----------p~~--------~~~~~~~al~~G~~vVigtt  138 (163)
                                |+.        ....++.|.+.|+++|.-.|
T Consensus        64 ~~~~~~~~~~~~~~~~~N~~~~~~l~~aa~~~g~~~v~~Ss  104 (299)
T PRK09987         64 HTAVDKAESEPEFAQLLNATSVEAIAKAANEVGAWVVHYST  104 (299)
T ss_pred             cCCcchhhcCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcc
Confidence                      211        22455677788888874443

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=96.57  E-value=0.012  Score=50.72  Aligned_cols=96  Identities=19%  Similarity=0.274  Sum_probs=58.9

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC-----C-------cchh----------hhc-cCCCCCCccee
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-----G-------EDIG----------MVC-DMEQPLEIPVM   91 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~-----g-------~~~~----------~l~-g~~~~~gi~v~   91 (163)
                      ..||.|+|+ |.+|..++..+. ..|+.=+.++|.+..     +       .|++          +.+ .+.....+..+
T Consensus        24 ~~~VlVvG~-GglGs~va~~La-~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~~~  101 (339)
T PRK07688         24 EKHVLIIGA-GALGTANAEMLV-RAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVEAI  101 (339)
T ss_pred             CCcEEEECC-CHHHHHHHHHHH-HcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEEEE
Confidence            468999995 999999999987 568866678885310     0       1111          000 00001111111


Q ss_pred             ------CCHHHHHhcccccCCccEEEEccC-chhHHHHHHHHHHcCCcEEEeCC
Q 031216           92 ------SDLTMVLGSISQSKARAVVIDFTD-ASTVYDNVKQATAFGMRSVVYVP  138 (163)
Q Consensus        92 ------~~l~ell~~~~~~~~~DVVIDfT~-p~~~~~~~~~al~~G~~vVigtt  138 (163)
                            +++++++      .++|+|||++. ++.-......|.+.++|+|.+..
T Consensus       102 ~~~~~~~~~~~~~------~~~DlVid~~Dn~~~r~~ln~~~~~~~iP~i~~~~  149 (339)
T PRK07688        102 VQDVTAEELEELV------TGVDLIIDATDNFETRFIVNDAAQKYGIPWIYGAC  149 (339)
T ss_pred             eccCCHHHHHHHH------cCCCEEEEcCCCHHHHHHHHHHHHHhCCCEEEEee
Confidence                  2334555      37999999985 44445566888999999997553

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.57  E-value=0.013  Score=48.85  Aligned_cols=100  Identities=13%  Similarity=0.131  Sum_probs=54.9

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCC-cchhh--------hc---cCC-------CCCCcceeCCHH
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG-EDIGM--------VC---DME-------QPLEIPVMSDLT   95 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g-~~~~~--------l~---g~~-------~~~gi~v~~~l~   95 (163)
                      +.||+|+| .|.||..++..+. ..+.++. ++|++... +.+.+        +.   ...       ...++.+++|++
T Consensus         3 ~~kIaViG-aG~mG~~iA~~la-~~G~~V~-l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~   79 (287)
T PRK08293          3 IKNVTVAG-AGVLGSQIAFQTA-FHGFDVT-IYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLA   79 (287)
T ss_pred             ccEEEEEC-CCHHHHHHHHHHH-hcCCeEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHH
Confidence            35899999 5999999999887 4577765 45643110 00000        00   000       012455678998


Q ss_pred             HHHhcccccCCccEEEEccCchh--H-HHH---HHHHHHcCCcEEEeCCCCCHHH
Q 031216           96 MVLGSISQSKARAVVIDFTDAST--V-YDN---VKQATAFGMRSVVYVPHIQLET  144 (163)
Q Consensus        96 ell~~~~~~~~~DVVIDfT~p~~--~-~~~---~~~al~~G~~vVigttg~~~e~  144 (163)
                      +++.      ++|+||.+. |+.  . .+.   +...+..+..+++-++.++..+
T Consensus        80 ~a~~------~aDlVieav-pe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~~~  127 (287)
T PRK08293         80 EAVK------DADLVIEAV-PEDPEIKGDFYEELAKVAPEKTIFATNSSTLLPSQ  127 (287)
T ss_pred             HHhc------CCCEEEEec-cCCHHHHHHHHHHHHhhCCCCCEEEECcccCCHHH
Confidence            8774      899999654 433  2 222   2333333443434444565544

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.56  E-value=0.019  Score=49.32  Aligned_cols=73  Identities=14%  Similarity=0.174  Sum_probs=45.2

Q ss_pred             CCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCC-cc--------hhhh--ccCC---CCCCcceeCCHHHHH
Q 031216           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG-ED--------IGMV--CDME---QPLEIPVMSDLTMVL   98 (163)
Q Consensus        33 ~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g-~~--------~~~l--~g~~---~~~gi~v~~~l~ell   98 (163)
                      +...||+|+| +|-||+.++..+. ..|+++. ++|..... .+        ...+  .+..   ....+...+++++++
T Consensus         5 ~~i~~VaVIG-aG~MG~giA~~~a-~aG~~V~-l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av   81 (321)
T PRK07066          5 TDIKTFAAIG-SGVIGSGWVARAL-AHGLDVV-AWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACV   81 (321)
T ss_pred             CCCCEEEEEC-cCHHHHHHHHHHH-hCCCeEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHh
Confidence            3456899999 5999999999887 5699988 57743210 00        0000  0000   012334567888877


Q ss_pred             hcccccCCccEEEEcc
Q 031216           99 GSISQSKARAVVIDFT  114 (163)
Q Consensus        99 ~~~~~~~~~DVVIDfT  114 (163)
                      .      ++|+||+..
T Consensus        82 ~------~aDlViEav   91 (321)
T PRK07066         82 A------DADFIQESA   91 (321)
T ss_pred             c------CCCEEEECC
Confidence            4      788888764

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=96.54  E-value=0.025  Score=45.08  Aligned_cols=95  Identities=20%  Similarity=0.359  Sum_probs=56.1

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC----------------Ccc----hh-hhccCCCCCCccee--
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV----------------GED----IG-MVCDMEQPLEIPVM--   91 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~----------------g~~----~~-~l~g~~~~~gi~v~--   91 (163)
                      ..||.|+| +|.+|..+++.+. ..|+.=+-++|.+..                |+.    +. .+..+.....+..+  
T Consensus        21 ~~~VlviG-~GglGs~ia~~La-~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~   98 (202)
T TIGR02356        21 NSHVLIIG-AGGLGSPAALYLA-GAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTALKE   98 (202)
T ss_pred             CCCEEEEC-CCHHHHHHHHHHH-HcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEehh
Confidence            46899999 5999999999987 457754557784310                110    00 11011001111111  


Q ss_pred             ----CCHHHHHhcccccCCccEEEEccC-chhHHHHHHHHHHcCCcEEEeC
Q 031216           92 ----SDLTMVLGSISQSKARAVVIDFTD-ASTVYDNVKQATAFGMRSVVYV  137 (163)
Q Consensus        92 ----~~l~ell~~~~~~~~~DVVIDfT~-p~~~~~~~~~al~~G~~vVigt  137 (163)
                          .++++.+      .++|+||+++. ++.-....+.|.++++++|.+.
T Consensus        99 ~i~~~~~~~~~------~~~D~Vi~~~d~~~~r~~l~~~~~~~~ip~i~~~  143 (202)
T TIGR02356        99 RVTAENLELLI------NNVDLVLDCTDNFATRYLINDACVALGTPLISAA  143 (202)
T ss_pred             cCCHHHHHHHH------hCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence                1234445      38999999884 4433456678899999998654

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=96.51  E-value=0.025  Score=48.72  Aligned_cols=37  Identities=16%  Similarity=0.144  Sum_probs=30.8

Q ss_pred             CCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031216           31 PPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (163)
Q Consensus        31 ~~~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid   68 (163)
                      -.+..+||.|+|++|.+|+.+++.+.+ .+.++.++..
T Consensus        17 ~~~~~~~IlVtGgtGfIG~~l~~~L~~-~G~~V~~v~r   53 (370)
T PLN02695         17 WPSEKLRICITGAGGFIASHIARRLKA-EGHYIIASDW   53 (370)
T ss_pred             CCCCCCEEEEECCccHHHHHHHHHHHh-CCCEEEEEEe
Confidence            344668999999999999999999985 5889987654

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=96.49  E-value=0.008  Score=47.17  Aligned_cols=98  Identities=16%  Similarity=0.232  Sum_probs=50.2

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCC-----cchhh----hccCC---------CCCCcceeCCHHHHH
Q 031216           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG-----EDIGM----VCDME---------QPLEIPVMSDLTMVL   98 (163)
Q Consensus        37 rV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g-----~~~~~----l~g~~---------~~~gi~v~~~l~ell   98 (163)
                      ||+|+|+ |.||+.++..+.. .|+++. ++|.....     ..+..    +....         ....+.+++|++++.
T Consensus         1 ~V~ViGa-G~mG~~iA~~~a~-~G~~V~-l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~   77 (180)
T PF02737_consen    1 KVAVIGA-GTMGRGIAALFAR-AGYEVT-LYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV   77 (180)
T ss_dssp             EEEEES--SHHHHHHHHHHHH-TTSEEE-EE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC
T ss_pred             CEEEEcC-CHHHHHHHHHHHh-CCCcEE-EEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh
Confidence            7999995 9999999998875 499988 56743110     01111    00000         012345668887763


Q ss_pred             hcccccCCccEEEEccCchh-----HHHHHHHHHHcCCcEEEeCCCCCHHH
Q 031216           99 GSISQSKARAVVIDFTDAST-----VYDNVKQATAFGMRSVVYVPHIQLET  144 (163)
Q Consensus        99 ~~~~~~~~~DVVIDfT~p~~-----~~~~~~~al~~G~~vVigttg~~~e~  144 (163)
                             ++|+||++..-+.     ....+...+.....+.+-|.+++..+
T Consensus        78 -------~adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~  121 (180)
T PF02737_consen   78 -------DADLVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSISE  121 (180)
T ss_dssp             -------TESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHH
T ss_pred             -------hhheehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHH
Confidence                   7899998873222     12222222333444444444665544

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=96.49  E-value=0.0046  Score=46.22  Aligned_cols=73  Identities=21%  Similarity=0.236  Sum_probs=45.7

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC-CCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEE
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-VGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~-~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVID  112 (163)
                      +..|+.|+|+ |+||+.++..+... +++=+-+++|+. ..+++.+..+.. ...+.-++++.+.+.      ++|+||.
T Consensus        11 ~~~~vlviGa-Gg~ar~v~~~L~~~-g~~~i~i~nRt~~ra~~l~~~~~~~-~~~~~~~~~~~~~~~------~~DivI~   81 (135)
T PF01488_consen   11 KGKRVLVIGA-GGAARAVAAALAAL-GAKEITIVNRTPERAEALAEEFGGV-NIEAIPLEDLEEALQ------EADIVIN   81 (135)
T ss_dssp             TTSEEEEESS-SHHHHHHHHHHHHT-TSSEEEEEESSHHHHHHHHHHHTGC-SEEEEEGGGHCHHHH------TESEEEE
T ss_pred             CCCEEEEECC-HHHHHHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHcCcc-ccceeeHHHHHHHHh------hCCeEEE
Confidence            3478999995 99999999999865 777555677653 112222222100 112233567776664      8999997


Q ss_pred             ccC
Q 031216          113 FTD  115 (163)
Q Consensus       113 fT~  115 (163)
                      +|.
T Consensus        82 aT~   84 (135)
T PF01488_consen   82 ATP   84 (135)
T ss_dssp             -SS
T ss_pred             ecC
Confidence            764

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=96.49  E-value=0.041  Score=49.68  Aligned_cols=108  Identities=10%  Similarity=0.058  Sum_probs=63.0

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhc-CCcEEEEEEecCC-------CC------cchhhhccCCCCCCcceeCCHHHHHhc
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAIDSHS-------VG------EDIGMVCDMEQPLEIPVMSDLTMVLGS  100 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~-~~~eLvgvid~~~-------~g------~~~~~l~g~~~~~gi~v~~~l~ell~~  100 (163)
                      |+||+|+| +|++|..++-.+.+. .+.+++++ |...       .|      ....+++.........+++++++++. 
T Consensus         1 ~m~I~ViG-~GyvGl~~A~~lA~~g~g~~V~gv-D~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~-   77 (473)
T PLN02353          1 MVKICCIG-AGYVGGPTMAVIALKCPDIEVVVV-DISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVA-   77 (473)
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHhcCCCCeEEEE-ECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHh-
Confidence            58999999 699999998888765 37888875 6320       01      11222221000012455677777664 


Q ss_pred             ccccCCccEEEEcc-Cchh-------------H----HHHHHHHHHcCCcEEEeCC---CCCHHHHHHHHH
Q 031216          101 ISQSKARAVVIDFT-DAST-------------V----YDNVKQATAFGMRSVVYVP---HIQLETVSALSA  150 (163)
Q Consensus       101 ~~~~~~~DVVIDfT-~p~~-------------~----~~~~~~al~~G~~vVigtt---g~~~e~~~~L~~  150 (163)
                           ++|++|.+- +|..             .    .+.+...++.|.-||+.+|   |.+.+-.+.|.+
T Consensus        78 -----~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~  143 (473)
T PLN02353         78 -----EADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTH  143 (473)
T ss_pred             -----cCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHh
Confidence                 899887653 3431             1    1222233456777887777   666655555554

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=96.48  E-value=0.024  Score=46.61  Aligned_cols=97  Identities=20%  Similarity=0.281  Sum_probs=58.3

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC-----C-------cchh---------hhccCCCCCCccee-
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-----G-------EDIG---------MVCDMEQPLEIPVM-   91 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~-----g-------~~~~---------~l~g~~~~~gi~v~-   91 (163)
                      +..||+|+| .|..|..+++.+. ..|+.=..++|.+..     +       .+++         .+..+.....+..+ 
T Consensus        31 ~~~~VliiG-~GglGs~va~~La-~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~~~  108 (245)
T PRK05690         31 KAARVLVVG-LGGLGCAASQYLA-AAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIETIN  108 (245)
T ss_pred             cCCeEEEEC-CCHHHHHHHHHHH-HcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEEEe
Confidence            346899999 5999999999987 567766667884210     0       0111         01001001112111 


Q ss_pred             -----CCHHHHHhcccccCCccEEEEccCchhH-HHHHHHHHHcCCcEEEeCC
Q 031216           92 -----SDLTMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP  138 (163)
Q Consensus        92 -----~~l~ell~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigtt  138 (163)
                           .+.++++      .++|+|||++..... ...-..|.++++|+|.+..
T Consensus       109 ~~i~~~~~~~~~------~~~DiVi~~~D~~~~r~~ln~~~~~~~ip~v~~~~  155 (245)
T PRK05690        109 ARLDDDELAALI------AGHDLVLDCTDNVATRNQLNRACFAAKKPLVSGAA  155 (245)
T ss_pred             ccCCHHHHHHHH------hcCCEEEecCCCHHHHHHHHHHHHHhCCEEEEeee
Confidence                 1223444      389999999854444 4455788999999997543

>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=96.48  E-value=0.049  Score=51.04  Aligned_cols=103  Identities=17%  Similarity=0.157  Sum_probs=60.0

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcC-CcEEEEEEecCCCCcchhhhccCCCCCCcc--eeCCHHHHHhcccccCCccEEEE
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAIDSHSVGEDIGMVCDMEQPLEIP--VMSDLTMVLGSISQSKARAVVID  112 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~-~~eLvgvid~~~~g~~~~~l~g~~~~~gi~--v~~~l~ell~~~~~~~~~DVVID  112 (163)
                      .||+|+| +|.||..+++.+.+.. ..++. ++|+...  +.....    ..++.  ...++++++.      ++|+||.
T Consensus         4 ~~I~IIG-~G~mG~ala~~l~~~G~~~~V~-~~d~~~~--~~~~a~----~~g~~~~~~~~~~~~~~------~aDvVil   69 (735)
T PRK14806          4 GRVVVIG-LGLIGGSFAKALRERGLAREVV-AVDRRAK--SLELAV----SLGVIDRGEEDLAEAVS------GADVIVL   69 (735)
T ss_pred             cEEEEEe-eCHHHHHHHHHHHhcCCCCEEE-EEECChh--HHHHHH----HCCCCCcccCCHHHHhc------CCCEEEE
Confidence            5799999 6999999999987542 23544 4675421  111111    12322  3456777764      8899997


Q ss_pred             ccCchhHHHHHHHHHH--cCCcEEEeCCCCCHHHHHHHHHHh
Q 031216          113 FTDASTVYDNVKQATA--FGMRSVVYVPHIQLETVSALSAFC  152 (163)
Q Consensus       113 fT~p~~~~~~~~~al~--~G~~vVigttg~~~e~~~~L~~~A  152 (163)
                      ++.|....+.+.....  ....+|+-..+......+.+.+..
T Consensus        70 avp~~~~~~vl~~l~~~~~~~~ii~d~~svk~~~~~~l~~~~  111 (735)
T PRK14806         70 AVPVLAMEKVLADLKPLLSEHAIVTDVGSTKGNVVDAARAVF  111 (735)
T ss_pred             CCCHHHHHHHHHHHHHhcCCCcEEEEcCCCchHHHHHHHHhc
Confidence            7766655555444332  223455544555545555666553

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=96.47  E-value=0.029  Score=44.66  Aligned_cols=96  Identities=15%  Similarity=0.242  Sum_probs=58.7

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC-----C-------cchhh---------hccCCCCCCccee--
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-----G-------EDIGM---------VCDMEQPLEIPVM--   91 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~-----g-------~~~~~---------l~g~~~~~gi~v~--   91 (163)
                      ..||.|+| +|..|.++++.+. ..|+.=.-++|.+..     +       .++++         +..+.....+..+  
T Consensus        21 ~s~VlIiG-~gglG~evak~La-~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~v~i~~~~~   98 (197)
T cd01492          21 SARILLIG-LKGLGAEIAKNLV-LSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSVDTD   98 (197)
T ss_pred             hCcEEEEc-CCHHHHHHHHHHH-HcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCCCEEEEEec
Confidence            36899999 5999999999997 678887778885321     0       01110         1011001112111  


Q ss_pred             ---CCHHHHHhcccccCCccEEEEccCchhH-HHHHHHHHHcCCcEEEeCC
Q 031216           92 ---SDLTMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP  138 (163)
Q Consensus        92 ---~~l~ell~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigtt  138 (163)
                         ++.++.+      .++|+||+.+.+... ...-+.|.++|+|+|.+-+
T Consensus        99 ~~~~~~~~~~------~~~dvVi~~~~~~~~~~~ln~~c~~~~ip~i~~~~  143 (197)
T cd01492          99 DISEKPEEFF------SQFDVVVATELSRAELVKINELCRKLGVKFYATGV  143 (197)
T ss_pred             CccccHHHHH------hCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEe
Confidence               2233444      388999988755444 4566788999999986554

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>COG4569 MhpF Acetaldehyde dehydrogenase (acetylating) [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=96.45  E-value=0.019  Score=47.18  Aligned_cols=97  Identities=25%  Similarity=0.290  Sum_probs=61.9

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhc-CCcEEEEE--EecCCCCcchhhhccCCCCCCccee-CCHHHHHhcccccCCccE
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKA-RGMEVAGA--IDSHSVGEDIGMVCDMEQPLEIPVM-SDLTMVLGSISQSKARAV  109 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~-~~~eLvgv--id~~~~g~~~~~l~g~~~~~gi~v~-~~l~ell~~~~~~~~~DV  109 (163)
                      ++.||+|+| +|++|..+.-.+.++ .-+|.-..  +|+...|..-..      ++|++-+ ..++-++.. -.-.++|.
T Consensus         3 sk~kvaiig-sgni~tdlm~k~lr~g~~le~~~mvgidp~sdglaraa------rlgv~tt~egv~~ll~~-p~~~di~l   74 (310)
T COG4569           3 SKRKVAIIG-SGNIGTDLMIKILRHGQHLEMAVMVGIDPQSDGLARAA------RLGVATTHEGVIGLLNM-PEFADIDL   74 (310)
T ss_pred             CcceEEEEc-cCcccHHHHHHHHhcCCcccceeEEccCCCccHHHHHH------hcCCcchhhHHHHHHhC-CCCCCcce
Confidence            468999999 899998866555555 44444433  444333321111      3344432 334444431 11134568


Q ss_pred             EEEccCchhHHHHHHHHHHcCCcEEEeCC
Q 031216          110 VIDFTDASTVYDNVKQATAFGMRSVVYVP  138 (163)
Q Consensus       110 VIDfT~p~~~~~~~~~al~~G~~vVigtt  138 (163)
                      |+|.|+.-.+.+++.++.+.|++.+==||
T Consensus        75 vfdatsa~~h~~~a~~~ae~gi~~idltp  103 (310)
T COG4569          75 VFDATSAGAHVKNAAALAEAGIRLIDLTP  103 (310)
T ss_pred             EEeccccchhhcchHhHHhcCCceeecch
Confidence            99999999999999999999999886555

>KOG2742 consensus Predicted oxidoreductase [General function prediction only]

Probab=96.43  E-value=0.0027  Score=55.02  Aligned_cols=108  Identities=15%  Similarity=0.106  Sum_probs=77.9

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCccee-CCHHHHHhcccccCCccEEEEc
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM-SDLTMVLGSISQSKARAVVIDF  113 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~-~~l~ell~~~~~~~~~DVVIDf  113 (163)
                      |. |+|.| +|-.-+..+-.+.+.+ +++-++..+...  .+.+..   ....++.| +.+|+.+..    ..+|.|...
T Consensus         3 Pg-v~v~G-Tg~~arv~iP~l~e~~-f~v~A~w~Rt~~--ea~a~a---a~~~v~~~t~~~deiLl~----~~vdlv~i~   70 (367)
T KOG2742|consen    3 PG-VGVFG-TGIFARVLIPLLKEEG-FEVKAIWGRTKT--EAKAKA---AEMNVRKYTSRLDEILLD----QDVDLVCIS   70 (367)
T ss_pred             Cc-eeEec-cChhHhhhhhhhhhcc-chHhhhhchhhh--HHHHhh---hccchhhccccchhhhcc----CCcceeEec
Confidence            45 99999 7999999888777655 888877766321  111111   13345544 688998763    678876655


Q ss_pred             cCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhh
Q 031216          114 TDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDK  154 (163)
Q Consensus       114 T~p~~~~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~  154 (163)
                      -.|.-+.+++..++..|+|||++++..+.++..++.++++.
T Consensus        71 lpp~~~~eI~~kal~~Gk~Vvcek~a~~~d~~k~~~~~~~s  111 (367)
T KOG2742|consen   71 LPPPLHAEIVVKALGIGKHVVCEKPATNLDAAKMVVALAYS  111 (367)
T ss_pred             cCCccceeeeeccccCCceEEeccCCcchhhhhhHHHHhhc
Confidence            67777899999999999999999998777777777777543

>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated

Probab=96.41  E-value=0.023  Score=52.81  Aligned_cols=35  Identities=23%  Similarity=0.191  Sum_probs=30.3

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid   68 (163)
                      +++||.|.|++|.+|+.+++.+.++.+.+++++..
T Consensus       314 ~~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~r  348 (660)
T PRK08125        314 RRTRVLILGVNGFIGNHLTERLLRDDNYEVYGLDI  348 (660)
T ss_pred             cCCEEEEECCCchHHHHHHHHHHhCCCcEEEEEeC
Confidence            45789999999999999999998766899998643

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=96.40  E-value=0.031  Score=45.21  Aligned_cols=95  Identities=22%  Similarity=0.331  Sum_probs=57.2

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC-----CCc-------chh---------hhccCCCCCCccee--
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-----VGE-------DIG---------MVCDMEQPLEIPVM--   91 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~-----~g~-------~~~---------~l~g~~~~~gi~v~--   91 (163)
                      ..||+|+| +|..|..+++.+. ..|+.-..++|.+.     .++       +++         .+..+.....+..+  
T Consensus        21 ~~~VlivG-~GglGs~va~~La-~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~~~   98 (228)
T cd00757          21 NARVLVVG-AGGLGSPAAEYLA-AAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAYNE   98 (228)
T ss_pred             CCcEEEEC-CCHHHHHHHHHHH-HcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEecc
Confidence            46899999 5999999999997 56787777888421     110       111         00000000112111  


Q ss_pred             ----CCHHHHHhcccccCCccEEEEccC-chhHHHHHHHHHHcCCcEEEeC
Q 031216           92 ----SDLTMVLGSISQSKARAVVIDFTD-ASTVYDNVKQATAFGMRSVVYV  137 (163)
Q Consensus        92 ----~~l~ell~~~~~~~~~DVVIDfT~-p~~~~~~~~~al~~G~~vVigt  137 (163)
                          +++++++.      ++|+||+++. ++.-...-+.|.++++|+|.+-
T Consensus        99 ~i~~~~~~~~~~------~~DvVi~~~d~~~~r~~l~~~~~~~~ip~i~~g  143 (228)
T cd00757          99 RLDAENAEELIA------GYDLVLDCTDNFATRYLINDACVKLGKPLVSGA  143 (228)
T ss_pred             eeCHHHHHHHHh------CCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence                22344553      7999998874 4443455678889999998643

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PLN02522 ATP citrate (pro-S)-lyase

Probab=96.39  E-value=0.021  Score=53.09  Aligned_cols=118  Identities=16%  Similarity=0.203  Sum_probs=74.7

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHh------cCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCcc
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTK------ARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA  108 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~------~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~D  108 (163)
                      ..|-.++| .   ....++.+.+      .+.-.+++++-+.. +.-..-+.|.. ..++|||++.+|+.++   ..++|
T Consensus        10 ~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~-~~~iPVf~tv~eA~~~---~~~~~   80 (608)
T PLN02522         10 TTQALFYN-Y---KQLPVQRMLDFDFLCGRETPSVAGIINPGS-EGFQKLFFGQE-EIAIPVHGSIEAACKA---HPTAD   80 (608)
T ss_pred             CceeEEEc-C---cHHHHHhhhccceeccCCCCeeEEEEcCCC-CcceeEecCCE-eeCccccchHHHHHHh---CCCCc
Confidence            35778887 3   3333333322      22234455554422 11111223432 5689999999999974   23789


Q ss_pred             EEEEccCchhHHH-HHHHHHHcCCcEE-EeCCCCCHHHHHHHHHHhhhcCeEEcC
Q 031216          109 VVIDFTDASTVYD-NVKQATAFGMRSV-VYVPHIQLETVSALSAFCDKASMVSTG  161 (163)
Q Consensus       109 VVIDfT~p~~~~~-~~~~al~~G~~vV-igttg~~~e~~~~L~~~A~~~~Vv~tg  161 (163)
                      +.+.|.+|..+.+ .++.+.+.|++.+ +=|.|+.+.+..+|.++|++.++-.-|
T Consensus        81 ~~vifvp~~~a~da~lEa~~a~GIk~~VIiteGfpe~d~~~l~~~Ar~~g~rlIG  135 (608)
T PLN02522         81 VFINFASFRSAAASSMEALKQPTIRVVAIIAEGVPESDTKQLIAYARANNKVVIG  135 (608)
T ss_pred             EEEEeCChHHhHHHHHHHHhhCCCCEEEEECCCCChhhHHHHHHHHHHcCCEEEC
Confidence            9998998887765 5555556798755 445588877788999999998876654

>PLN02206 UDP-glucuronate decarboxylase

Probab=96.38  E-value=0.027  Score=50.07  Aligned_cols=91  Identities=14%  Similarity=0.175  Sum_probs=54.3

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCc--chhhhccCCCCCCcce-e-CCHHHHHhcccccCCccEEE
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGE--DIGMVCDMEQPLEIPV-M-SDLTMVLGSISQSKARAVVI  111 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~--~~~~l~g~~~~~gi~v-~-~~l~ell~~~~~~~~~DVVI  111 (163)
                      +||.|+|++|.+|+.+++.+.+ .+.+++++ |+...+.  .......   ..++.. . +-+++++      .++|+||
T Consensus       120 ~kILVTGatGfIGs~Lv~~Ll~-~G~~V~~l-d~~~~~~~~~~~~~~~---~~~~~~i~~D~~~~~l------~~~D~Vi  188 (442)
T PLN02206        120 LRVVVTGGAGFVGSHLVDRLMA-RGDSVIVV-DNFFTGRKENVMHHFS---NPNFELIRHDVVEPIL------LEVDQIY  188 (442)
T ss_pred             CEEEEECcccHHHHHHHHHHHH-CcCEEEEE-eCCCccchhhhhhhcc---CCceEEEECCccChhh------cCCCEEE
Confidence            7999999999999999999985 58888865 4321111  1111111   111211 1 2233444      3799999


Q ss_pred             EccC---ch---------------hHHHHHHHHHHcCCcEEEeC
Q 031216          112 DFTD---AS---------------TVYDNVKQATAFGMRSVVYV  137 (163)
Q Consensus       112 DfT~---p~---------------~~~~~~~~al~~G~~vVigt  137 (163)
                      .+..   |.               .....+.+|.+.|+++|.-.
T Consensus       189 HlAa~~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~g~r~V~~S  232 (442)
T PLN02206        189 HLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTS  232 (442)
T ss_pred             EeeeecchhhhhcCHHHHHHHHHHHHHHHHHHHHHhCCEEEEEC
Confidence            8762   11               12345677888898877433

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=96.38  E-value=0.039  Score=48.74  Aligned_cols=32  Identities=25%  Similarity=0.330  Sum_probs=26.5

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~   69 (163)
                      ++||+|+| +|+||..++..+.+ .|.++.+ +|+
T Consensus         3 ~~kI~VIG-lG~~G~~~A~~La~-~G~~V~~-~D~   34 (415)
T PRK11064          3 FETISVIG-LGYIGLPTAAAFAS-RQKQVIG-VDI   34 (415)
T ss_pred             ccEEEEEC-cchhhHHHHHHHHh-CCCEEEE-EeC
Confidence            57999999 79999999999874 5788875 564

>PRK07411 hypothetical protein; Validated

Probab=96.37  E-value=0.028  Score=49.40  Aligned_cols=96  Identities=17%  Similarity=0.211  Sum_probs=59.9

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC-----CCc-------chh---------hhccCCCCCCccee--
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-----VGE-------DIG---------MVCDMEQPLEIPVM--   91 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~-----~g~-------~~~---------~l~g~~~~~gi~v~--   91 (163)
                      ..||+|+| +|..|..+++.+. ..|+.=..++|.+.     .++       +++         .+..+.....+..+  
T Consensus        38 ~~~VlivG-~GGlG~~va~~La-~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~~~~  115 (390)
T PRK07411         38 AASVLCIG-TGGLGSPLLLYLA-AAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDLYET  115 (390)
T ss_pred             cCcEEEEC-CCHHHHHHHHHHH-HcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEEEec
Confidence            46899999 5999999999987 67888888888421     111       111         00011001112212  


Q ss_pred             ----CCHHHHHhcccccCCccEEEEccCchhH-HHHHHHHHHcCCcEEEeCC
Q 031216           92 ----SDLTMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP  138 (163)
Q Consensus        92 ----~~l~ell~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigtt  138 (163)
                          .+.++++.      ++|+|||++..-.. .-.-..|.+.++|.|.|..
T Consensus       116 ~~~~~~~~~~~~------~~D~Vvd~~d~~~~r~~ln~~~~~~~~p~v~~~~  161 (390)
T PRK07411        116 RLSSENALDILA------PYDVVVDGTDNFPTRYLVNDACVLLNKPNVYGSI  161 (390)
T ss_pred             ccCHHhHHHHHh------CCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEE
Confidence                12234553      89999999865444 4455788999999997654

>PLN02494 adenosylhomocysteinase

Probab=96.37  E-value=0.026  Score=51.04  Aligned_cols=112  Identities=11%  Similarity=0.052  Sum_probs=65.7

Q ss_pred             eeccCCCCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhccccc
Q 031216           25 ISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQS  104 (163)
Q Consensus        25 ~~~~~~~~~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~  104 (163)
                      |.+.++..-.-.+|+|+| +|.+|+.+++.+.. -+++++ ++++...  ...+..    ..+..+ .++++++.     
T Consensus       244 i~r~t~i~LaGKtVvViG-yG~IGr~vA~~aka-~Ga~VI-V~e~dp~--r~~eA~----~~G~~v-v~leEal~-----  308 (477)
T PLN02494        244 LMRATDVMIAGKVAVICG-YGDVGKGCAAAMKA-AGARVI-VTEIDPI--CALQAL----MEGYQV-LTLEDVVS-----  308 (477)
T ss_pred             HHHhcCCccCCCEEEEEC-CCHHHHHHHHHHHH-CCCEEE-EEeCCch--hhHHHH----hcCCee-ccHHHHHh-----
Confidence            456667655567899999 69999999999874 488865 4654321  101111    123333 26788774     


Q ss_pred             CCccEEEEccCchh-HHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHh
Q 031216          105 KARAVVIDFTDAST-VYDNVKQATAFGMRSVVYVPHIQLETVSALSAFC  152 (163)
Q Consensus       105 ~~~DVVIDfT~p~~-~~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A  152 (163)
                       ..|++|..|-... ........++.|--++.-.-.-+.-+.+.|.+++
T Consensus       309 -~ADVVI~tTGt~~vI~~e~L~~MK~GAiLiNvGr~~~eID~~aL~~~~  356 (477)
T PLN02494        309 -EADIFVTTTGNKDIIMVDHMRKMKNNAIVCNIGHFDNEIDMLGLETYP  356 (477)
T ss_pred             -hCCEEEECCCCccchHHHHHhcCCCCCEEEEcCCCCCccCHHHHhhcc
Confidence             8999997664333 3344555666665554321111344455666653

>PRK13243 glyoxylate reductase; Reviewed

Probab=96.37  E-value=0.026  Score=48.53  Aligned_cols=103  Identities=16%  Similarity=0.075  Sum_probs=59.9

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT  114 (163)
                      -.+|+|+| +|+||+.+++.+. .-|+++. ++|+..... ...      ..+.. +.++++++.      ..|+|+...
T Consensus       150 gktvgIiG-~G~IG~~vA~~l~-~~G~~V~-~~d~~~~~~-~~~------~~~~~-~~~l~ell~------~aDiV~l~l  212 (333)
T PRK13243        150 GKTIGIIG-FGRIGQAVARRAK-GFGMRIL-YYSRTRKPE-AEK------ELGAE-YRPLEELLR------ESDFVSLHV  212 (333)
T ss_pred             CCEEEEEC-cCHHHHHHHHHHH-HCCCEEE-EECCCCChh-hHH------HcCCE-ecCHHHHHh------hCCEEEEeC
Confidence            47899999 7999999999987 4588876 567542111 111      12332 468999985      899998555


Q ss_pred             Cch-hHH----HHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhc
Q 031216          115 DAS-TVY----DNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKA  155 (163)
Q Consensus       115 ~p~-~~~----~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~~  155 (163)
                      +.+ ...    +.....++.|.-+|--..|--.+ .+.|.++.++-
T Consensus       213 P~t~~T~~~i~~~~~~~mk~ga~lIN~aRg~~vd-~~aL~~aL~~g  257 (333)
T PRK13243        213 PLTKETYHMINEERLKLMKPTAILVNTARGKVVD-TKALVKALKEG  257 (333)
T ss_pred             CCChHHhhccCHHHHhcCCCCeEEEECcCchhcC-HHHHHHHHHcC
Confidence            221 112    23344455665555433343222 24455554443

>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates

Probab=96.36  E-value=0.016  Score=45.55  Aligned_cols=89  Identities=13%  Similarity=0.140  Sum_probs=52.6

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT  114 (163)
                      ..+|+|+| +|..|+.++..+. ..+++++-........++-.+-.      |..+ .+++|+..      ..|+|+ ..
T Consensus         4 ~k~IAViG-yGsQG~a~AlNLr-DSG~~V~Vglr~~s~s~~~A~~~------Gf~v-~~~~eAv~------~aDvV~-~L   67 (165)
T PF07991_consen    4 GKTIAVIG-YGSQGHAHALNLR-DSGVNVIVGLREGSASWEKAKAD------GFEV-MSVAEAVK------KADVVM-LL   67 (165)
T ss_dssp             TSEEEEES--SHHHHHHHHHHH-HCC-EEEEEE-TTCHHHHHHHHT------T-EC-CEHHHHHH------C-SEEE-E-
T ss_pred             CCEEEEEC-CChHHHHHHHHHH-hCCCCEEEEecCCCcCHHHHHHC------CCee-ccHHHHHh------hCCEEE-Ee
Confidence            46899999 7999999999987 57898886555432223333322      3333 37788875      899988 44


Q ss_pred             CchhH-----HHHHHHHHHcCCcEEEeCCCC
Q 031216          115 DASTV-----YDNVKQATAFGMRSVVYVPHI  140 (163)
Q Consensus       115 ~p~~~-----~~~~~~al~~G~~vVigttg~  140 (163)
                      .|+..     .+.+...++.|.-++. ..||
T Consensus        68 ~PD~~q~~vy~~~I~p~l~~G~~L~f-ahGf   97 (165)
T PF07991_consen   68 LPDEVQPEVYEEEIAPNLKPGATLVF-AHGF   97 (165)
T ss_dssp             S-HHHHHHHHHHHHHHHS-TT-EEEE-SSSH
T ss_pred             CChHHHHHHHHHHHHhhCCCCCEEEe-CCcc
Confidence            45443     3555667888876654 4454

This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.

>PRK08291 ectoine utilization protein EutC; Validated

Probab=96.35  E-value=0.0063  Score=52.01  Aligned_cols=89  Identities=16%  Similarity=0.172  Sum_probs=56.9

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhcc-CCCCCCc--ceeCCHHHHHhcccccCCccEEE
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCD-MEQPLEI--PVMSDLTMVLGSISQSKARAVVI  111 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g-~~~~~gi--~v~~~l~ell~~~~~~~~~DVVI  111 (163)
                      ..+++|+| +|.+|+.++..+....+++-+.+++++..  .+..+.. +....++  ..++|+++++.      ++|+|+
T Consensus       132 ~~~v~IiG-aG~~a~~~~~al~~~~~~~~V~v~~R~~~--~a~~l~~~~~~~~g~~v~~~~d~~~al~------~aDiVi  202 (330)
T PRK08291        132 ASRAAVIG-AGEQARLQLEALTLVRPIREVRVWARDAA--KAEAYAADLRAELGIPVTVARDVHEAVA------GADIIV  202 (330)
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHhcCCCCEEEEEcCCHH--HHHHHHHHHhhccCceEEEeCCHHHHHc------cCCEEE
Confidence            36899999 69999999999886667888888886531  2222211 0012233  34789999885      789998


Q ss_pred             EccCchhHHHHHH-HHHHcCCcEE
Q 031216          112 DFTDASTVYDNVK-QATAFGMRSV  134 (163)
Q Consensus       112 DfT~p~~~~~~~~-~al~~G~~vV  134 (163)
                      ..|. ... +.+. ..++.|.|+.
T Consensus       203 ~aT~-s~~-p~i~~~~l~~g~~v~  224 (330)
T PRK08291        203 TTTP-SEE-PILKAEWLHPGLHVT  224 (330)
T ss_pred             EeeC-CCC-cEecHHHcCCCceEE
Confidence            6653 221 2222 2367787765

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.34  E-value=0.029  Score=46.69  Aligned_cols=32  Identities=22%  Similarity=0.255  Sum_probs=26.0

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~   70 (163)
                      .||+|+| .|.||..++..+. ..+.+++ ++|+.
T Consensus         5 ~kI~vIG-aG~mG~~iA~~la-~~G~~V~-l~d~~   36 (292)
T PRK07530          5 KKVGVIG-AGQMGNGIAHVCA-LAGYDVL-LNDVS   36 (292)
T ss_pred             CEEEEEC-CcHHHHHHHHHHH-HCCCeEE-EEeCC
Confidence            5799999 5999999999987 4688877 56743

>TIGR02992 ectoine_eutC ectoine utilization protein EutC

Probab=96.34  E-value=0.0068  Score=51.78  Aligned_cols=91  Identities=15%  Similarity=0.103  Sum_probs=59.4

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccC-CCCCCc--ceeCCHHHHHhcccccCCccEEE
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDM-EQPLEI--PVMSDLTMVLGSISQSKARAVVI  111 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~-~~~~gi--~v~~~l~ell~~~~~~~~~DVVI  111 (163)
                      ..+++|+| +|.+|+.+++.+....+++-+.+++++.  .++.++... ....++  ..++++++++.      +.|+|+
T Consensus       129 ~~~v~iiG-aG~qA~~~~~al~~~~~i~~v~V~~R~~--~~a~~~a~~~~~~~g~~v~~~~~~~~av~------~aDiVv  199 (326)
T TIGR02992       129 SSVVAIFG-AGMQARLQLEALTLVRDIRSARIWARDS--AKAEALALQLSSLLGIDVTAATDPRAAMS------GADIIV  199 (326)
T ss_pred             CcEEEEEC-CCHHHHHHHHHHHHhCCccEEEEECCCH--HHHHHHHHHHHhhcCceEEEeCCHHHHhc------cCCEEE
Confidence            46899999 6999999999998667888888888653  122222210 011233  34689999885      899999


Q ss_pred             EccCchhHHHHH-HHHHHcCCcEE-Ee
Q 031216          112 DFTDASTVYDNV-KQATAFGMRSV-VY  136 (163)
Q Consensus       112 DfT~p~~~~~~~-~~al~~G~~vV-ig  136 (163)
                      -+|+. .. +.+ ...++.|.++. +|
T Consensus       200 taT~s-~~-p~i~~~~l~~g~~i~~vg  224 (326)
T TIGR02992       200 TTTPS-ET-PILHAEWLEPGQHVTAMG  224 (326)
T ss_pred             EecCC-CC-cEecHHHcCCCcEEEeeC
Confidence            66633 22 222 24567888876 44

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=96.33  E-value=0.036  Score=45.16  Aligned_cols=86  Identities=15%  Similarity=0.119  Sum_probs=51.1

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCC-cchhhhccCCCCCCccee-CCHHHHHhcccccCCccEEEE
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG-EDIGMVCDMEQPLEIPVM-SDLTMVLGSISQSKARAVVID  112 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g-~~~~~l~g~~~~~gi~v~-~~l~ell~~~~~~~~~DVVID  112 (163)
                      |++++|.| +|+||..+++++. ..+.|++-...+.+.. ..+.+      ..+..+. .+.+++.+      ..|||+ 
T Consensus         1 m~~~~i~G-tGniG~alA~~~a-~ag~eV~igs~r~~~~~~a~a~------~l~~~i~~~~~~dA~~------~aDVVv-   65 (211)
T COG2085           1 MMIIAIIG-TGNIGSALALRLA-KAGHEVIIGSSRGPKALAAAAA------ALGPLITGGSNEDAAA------LADVVV-   65 (211)
T ss_pred             CcEEEEec-cChHHHHHHHHHH-hCCCeEEEecCCChhHHHHHHH------hhccccccCChHHHHh------cCCEEE-
Confidence            68899999 6999999999987 5678887543432210 11111      1222222 45555553      799998 


Q ss_pred             ccCchhHHHHHHHHHH--c-CCcEEE
Q 031216          113 FTDASTVYDNVKQATA--F-GMRSVV  135 (163)
Q Consensus       113 fT~p~~~~~~~~~al~--~-G~~vVi  135 (163)
                      .+.|-....-+...++  . ||-||-
T Consensus        66 LAVP~~a~~~v~~~l~~~~~~KIvID   91 (211)
T COG2085          66 LAVPFEAIPDVLAELRDALGGKIVID   91 (211)
T ss_pred             EeccHHHHHhHHHHHHHHhCCeEEEe
Confidence            7777666443333333  2 565553

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=96.33  E-value=0.081  Score=46.11  Aligned_cols=91  Identities=15%  Similarity=0.165  Sum_probs=52.6

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEc
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDf  113 (163)
                      .+.||+|+|++|.||+.+++.+.. .+.++. ++|++.                   .+++++++.      ++|+||.+
T Consensus        97 ~~~~I~IiGG~GlmG~slA~~l~~-~G~~V~-~~d~~~-------------------~~~~~~~~~------~aDlVila  149 (374)
T PRK11199         97 DLRPVVIVGGKGQLGRLFAKMLTL-SGYQVR-ILEQDD-------------------WDRAEDILA------DAGMVIVS  149 (374)
T ss_pred             ccceEEEEcCCChhhHHHHHHHHH-CCCeEE-EeCCCc-------------------chhHHHHHh------cCCEEEEe
Confidence            447899999779999999999875 567755 344321                   124555553      78888855


Q ss_pred             cCchhHHHHHHHHHHcCC-cEEEeCCCCCHHHHHHHHHH
Q 031216          114 TDASTVYDNVKQATAFGM-RSVVYVPHIQLETVSALSAF  151 (163)
Q Consensus       114 T~p~~~~~~~~~al~~G~-~vVigttg~~~e~~~~L~~~  151 (163)
                      +++....+.+......+. .+|+-.+.....-...+.+.
T Consensus       150 vP~~~~~~~~~~l~~l~~~~iv~Dv~SvK~~~~~~~~~~  188 (374)
T PRK11199        150 VPIHLTEEVIARLPPLPEDCILVDLTSVKNAPLQAMLAA  188 (374)
T ss_pred             CcHHHHHHHHHHHhCCCCCcEEEECCCccHHHHHHHHHh
Confidence            544444555544333222 23343333333344444443

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=96.30  E-value=0.037  Score=47.96  Aligned_cols=95  Identities=19%  Similarity=0.270  Sum_probs=58.5

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC-----CCc-------chh---------hhccCCCCCCccee--
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-----VGE-------DIG---------MVCDMEQPLEIPVM--   91 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~-----~g~-------~~~---------~l~g~~~~~gi~v~--   91 (163)
                      ..||.|+| +|..|..+++.+. ..|+.=..++|.+.     .++       +++         .+..+.....+..+  
T Consensus        28 ~~~VlivG-~GGlGs~~a~~La-~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~~~  105 (355)
T PRK05597         28 DAKVAVIG-AGGLGSPALLYLA-GAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVSVR  105 (355)
T ss_pred             CCeEEEEC-CCHHHHHHHHHHH-HcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEEEe
Confidence            46899999 5999999999987 67887788888431     011       110         00000001112111  


Q ss_pred             ----CCHHHHHhcccccCCccEEEEccCchhH-HHHHHHHHHcCCcEEEeC
Q 031216           92 ----SDLTMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYV  137 (163)
Q Consensus        92 ----~~l~ell~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigt  137 (163)
                          ++..+++      .++|+|||++..-.. .-.-..|.+.++|+|.|-
T Consensus       106 ~i~~~~~~~~~------~~~DvVvd~~d~~~~r~~~n~~c~~~~ip~v~~~  150 (355)
T PRK05597        106 RLTWSNALDEL------RDADVILDGSDNFDTRHLASWAAARLGIPHVWAS  150 (355)
T ss_pred             ecCHHHHHHHH------hCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence                1223455      389999999854333 445578899999999754

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=96.29  E-value=0.034  Score=48.79  Aligned_cols=96  Identities=19%  Similarity=0.296  Sum_probs=59.2

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC-----CC-------cchh---------hhccCCCCCCccee--
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-----VG-------EDIG---------MVCDMEQPLEIPVM--   91 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~-----~g-------~~~~---------~l~g~~~~~gi~v~--   91 (163)
                      ..||.|+| +|..|..++..+. ..|+.=..++|.+.     .+       .+++         .+..+.....+..+  
T Consensus        42 ~~~VlviG-~GGlGs~va~~La-~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~  119 (392)
T PRK07878         42 NARVLVIG-AGGLGSPTLLYLA-AAGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEINPLVNVRLHEF  119 (392)
T ss_pred             cCCEEEEC-CCHHHHHHHHHHH-HcCCCeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHhCCCcEEEEEec
Confidence            46899999 5999999999987 57887777888421     01       1111         00111001112111  


Q ss_pred             ----CCHHHHHhcccccCCccEEEEccC-chhHHHHHHHHHHcCCcEEEeCC
Q 031216           92 ----SDLTMVLGSISQSKARAVVIDFTD-ASTVYDNVKQATAFGMRSVVYVP  138 (163)
Q Consensus        92 ----~~l~ell~~~~~~~~~DVVIDfT~-p~~~~~~~~~al~~G~~vVigtt  138 (163)
                          ++.++++      .++|+|||++. +..-...-..|.+.|+|+|.|..
T Consensus       120 ~i~~~~~~~~~------~~~D~Vvd~~d~~~~r~~ln~~~~~~~~p~v~~~~  165 (392)
T PRK07878        120 RLDPSNAVELF------SQYDLILDGTDNFATRYLVNDAAVLAGKPYVWGSI  165 (392)
T ss_pred             cCChhHHHHHH------hcCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEe
Confidence                1223455      38999999984 44334566888999999997654

>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones

Probab=96.27  E-value=0.036  Score=46.30  Aligned_cols=94  Identities=14%  Similarity=0.131  Sum_probs=54.5

Q ss_pred             EEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCC----CCCcceeCCHHHHHhcccccCCccEEEEcc
Q 031216           39 IINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQ----PLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (163)
Q Consensus        39 ~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~----~~gi~v~~~l~ell~~~~~~~~~DVVIDfT  114 (163)
                      .|+|++|.+|+.+++.+.+.....=+-++|+.........+.....    ..++.-.++++++++      .+|+||...
T Consensus         1 LVTGgsGflG~~iv~~Ll~~g~~~~Vr~~d~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~a~~------g~d~V~H~A   74 (280)
T PF01073_consen    1 LVTGGSGFLGSHIVRQLLERGYIYEVRVLDRSPPPKFLKDLQKSGVKEYIQGDITDPESLEEALE------GVDVVFHTA   74 (280)
T ss_pred             CEEcCCcHHHHHHHHHHHHCCCceEEEEcccccccccchhhhcccceeEEEeccccHHHHHHHhc------CCceEEEeC
Confidence            4899999999999999998765333345664321111011111000    112222356666774      899999874


Q ss_pred             Cc-----------------hhHHHHHHHHHHcCCcEEEeCC
Q 031216          115 DA-----------------STVYDNVKQATAFGMRSVVYVP  138 (163)
Q Consensus       115 ~p-----------------~~~~~~~~~al~~G~~vVigtt  138 (163)
                      .|                 ..+...+++|.++|+.-+|-|.
T Consensus        75 a~~~~~~~~~~~~~~~vNV~GT~nvl~aa~~~~VkrlVytS  115 (280)
T PF01073_consen   75 APVPPWGDYPPEEYYKVNVDGTRNVLEAARKAGVKRLVYTS  115 (280)
T ss_pred             ccccccCcccHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEc
Confidence            21                 1234456788888988776554

3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=96.27  E-value=0.033  Score=47.88  Aligned_cols=61  Identities=16%  Similarity=0.159  Sum_probs=42.5

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT  114 (163)
                      -.+|+|+| +|+||+.+++.+. .-++++.+ +|+.... . ..        ......++++++.      ..|+|+...
T Consensus       146 g~~VgIIG-~G~IG~~vA~~L~-~~G~~V~~-~d~~~~~-~-~~--------~~~~~~~l~ell~------~aDiVil~l  206 (330)
T PRK12480        146 NMTVAIIG-TGRIGAATAKIYA-GFGATITA-YDAYPNK-D-LD--------FLTYKDSVKEAIK------DADIISLHV  206 (330)
T ss_pred             CCEEEEEC-CCHHHHHHHHHHH-hCCCEEEE-EeCChhH-h-hh--------hhhccCCHHHHHh------cCCEEEEeC
Confidence            35899999 6999999999987 56899885 5643210 0 00        1123468999985      899988554

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=96.24  E-value=0.041  Score=45.12  Aligned_cols=95  Identities=18%  Similarity=0.237  Sum_probs=58.2

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC-----CC-------cchh---------hhccCCCCCCccee--
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-----VG-------EDIG---------MVCDMEQPLEIPVM--   91 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~-----~g-------~~~~---------~l~g~~~~~gi~v~--   91 (163)
                      ..||+|+| +|.+|..+++.+. ..|+.=.-++|.+.     .+       .+++         .+..+.....+..+  
T Consensus        11 ~~~VlVvG-~GGvGs~va~~La-r~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~~~~   88 (231)
T cd00755          11 NAHVAVVG-LGGVGSWAAEALA-RSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAVEE   88 (231)
T ss_pred             CCCEEEEC-CCHHHHHHHHHHH-HcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEEeee
Confidence            46899999 6999999999997 45775555777421     00       0110         00000001111111  


Q ss_pred             ----CCHHHHHhcccccCCccEEEEccC-chhHHHHHHHHHHcCCcEEEe
Q 031216           92 ----SDLTMVLGSISQSKARAVVIDFTD-ASTVYDNVKQATAFGMRSVVY  136 (163)
Q Consensus        92 ----~~l~ell~~~~~~~~~DVVIDfT~-p~~~~~~~~~al~~G~~vVig  136 (163)
                          +++++++.     .++|+|||+.. ++.-......|.++++++|..
T Consensus        89 ~i~~~~~~~l~~-----~~~D~VvdaiD~~~~k~~L~~~c~~~~ip~I~s  133 (231)
T cd00755          89 FLTPDNSEDLLG-----GDPDFVVDAIDSIRAKVALIAYCRKRKIPVISS  133 (231)
T ss_pred             ecCHhHHHHHhc-----CCCCEEEEcCCCHHHHHHHHHHHHHhCCCEEEE
Confidence                24455654     47999999874 444467778999999999953

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=96.24  E-value=0.034  Score=46.38  Aligned_cols=32  Identities=28%  Similarity=0.341  Sum_probs=25.9

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~   69 (163)
                      +.||+|+| .|.||..+++.+.. .+.++. ++|+
T Consensus         4 ~~~V~vIG-~G~mG~~iA~~l~~-~G~~V~-~~d~   35 (295)
T PLN02545          4 IKKVGVVG-AGQMGSGIAQLAAA-AGMDVW-LLDS   35 (295)
T ss_pred             cCEEEEEC-CCHHHHHHHHHHHh-cCCeEE-EEeC
Confidence            35799999 59999999999874 578877 5674

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=96.22  E-value=0.086  Score=42.47  Aligned_cols=34  Identities=21%  Similarity=0.394  Sum_probs=29.1

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~   69 (163)
                      +.||.|+|++|.+|+.+++.+.+ .+.++.++..+
T Consensus        17 ~~~ilItGasG~iG~~l~~~L~~-~g~~V~~~~R~   50 (251)
T PLN00141         17 TKTVFVAGATGRTGKRIVEQLLA-KGFAVKAGVRD   50 (251)
T ss_pred             CCeEEEECCCcHHHHHHHHHHHh-CCCEEEEEecC
Confidence            57999999999999999999875 58898877653

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=96.21  E-value=0.032  Score=48.30  Aligned_cols=64  Identities=16%  Similarity=0.165  Sum_probs=43.8

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT  114 (163)
                      -.+|+|+| +|.||+.+++.+. ..|+++.+..++ ....+...      ..+..+ .++++++.      ..|+|+...
T Consensus        16 gKtVGIIG-~GsIG~amA~nL~-d~G~~ViV~~r~-~~s~~~A~------~~G~~v-~sl~Eaak------~ADVV~llL   79 (335)
T PRK13403         16 GKTVAVIG-YGSQGHAQAQNLR-DSGVEVVVGVRP-GKSFEVAK------ADGFEV-MSVSEAVR------TAQVVQMLL   79 (335)
T ss_pred             cCEEEEEe-EcHHHHHHHHHHH-HCcCEEEEEECc-chhhHHHH------HcCCEE-CCHHHHHh------cCCEEEEeC
Confidence            36799999 8999999999987 579999865443 21111111      223433 48999885      899988444

>COG1260 INO1 Myo-inositol-1-phosphate synthase [Lipid metabolism]

Probab=96.19  E-value=0.033  Score=48.46  Aligned_cols=128  Identities=20%  Similarity=0.255  Sum_probs=76.2

Q ss_pred             CCCeeEEEEcCCCHHHHHHHHHHHhc---------------------CCcEEEEEEec--CCCCcchhhhccCC------
Q 031216           33 QSNIKVIINGAVKEIGRAAVIAVTKA---------------------RGMEVAGAIDS--HSVGEDIGMVCDME------   83 (163)
Q Consensus        33 ~~~irV~VvGa~G~mG~~i~~~i~~~---------------------~~~eLvgvid~--~~~g~~~~~l~g~~------   83 (163)
                      ..|+||+++| .|+-.+.+++-+...                     .++|+++..|.  +..|.|+.+..-..      
T Consensus         3 ~~~vrv~iiG-~Gn~AssLvqgie~~k~~e~~~~~g~~~~~~~~~~~~dieivaafdvd~~KVg~dl~Eai~~~~n~~~~   81 (362)
T COG1260           3 TTMVRVAIIG-VGNCASSLVQGIEYYKAGEDEPVPGLMHRDEGGYKVEDIEIVAAFDVDARKVGKDLSEAIKAPPNVTSK   81 (362)
T ss_pred             cceEEEEEEe-ccchHHHHHHHHHHHhccCCCccceeccccccCcCccceEEEEeecccHhhcChhHHHHHhcCCCCCce
Confidence            4689999999 699988888776533                     36799999983  35676655543110      


Q ss_pred             -----CCCCccee---------CCHHHHHhc---ccccCCccE-----------EEEccC---chhHHHHHHHHHHcCCc
Q 031216           84 -----QPLEIPVM---------SDLTMVLGS---ISQSKARAV-----------VIDFTD---ASTVYDNVKQATAFGMR  132 (163)
Q Consensus        84 -----~~~gi~v~---------~~l~ell~~---~~~~~~~DV-----------VIDfT~---p~~~~~~~~~al~~G~~  132 (163)
                           ...|+.+-         ..+++.++.   ..+....|+           ++.+.+   .+...-|+.++++.|++
T Consensus        82 ~~~~~~~~Gv~v~~g~~Ldg~~~~l~~~~~~~~~~~e~~~~dvv~vL~~~~tE~lvny~p~gs~~a~~~YA~aal~aG~a  161 (362)
T COG1260          82 IAPDVPKTGVKVRRGPTLDGEGLHLAEYIERIQEESEAEAVDVVVVLNVAKTEVLVNYLPVGSESASYFYAAAALAAGVA  161 (362)
T ss_pred             eecccccCCcEecccCCcCcccchhhhhcchhhcccccccccceeeecccCccccccccccchhHHHHHHHHHHHHcCCc
Confidence                 01111110         112222220   001123333           222221   23446788999999999


Q ss_pred             EEEeCCCCCHHHHHHHHHHhhhcCeEEcCC
Q 031216          133 SVVYVPHIQLETVSALSAFCDKASMVSTGS  162 (163)
Q Consensus       133 vVigttg~~~e~~~~L~~~A~~~~Vv~tg~  162 (163)
                      .|-.+|.+-.. .+.+.+++++.++...|.
T Consensus       162 fvN~~P~~iA~-dP~~~~~fee~g~pi~GD  190 (362)
T COG1260         162 FVNAIPVFIAS-DPAWVELFEEKGLPIAGD  190 (362)
T ss_pred             eecccCccccC-CHHHHHHHHHcCCceecc
Confidence            99999855332 255889999998887763

>PRK06444 prephenate dehydrogenase; Provisional

Probab=96.18  E-value=0.016  Score=46.59  Aligned_cols=28  Identities=25%  Similarity=0.355  Sum_probs=24.0

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEE
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVA   64 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLv   64 (163)
                      +||+|+|++|+||+.+++.+. ..|+++.
T Consensus         1 ~~~~iiG~~G~mG~~~~~~~~-~~g~~v~   28 (197)
T PRK06444          1 MMEIIIGKNGRLGRVLCSILD-DNGLGVY   28 (197)
T ss_pred             CEEEEEecCCcHHHHHHHHHH-hCCCEEE
Confidence            589999999999999999886 5688864

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=96.18  E-value=0.071  Score=42.44  Aligned_cols=96  Identities=15%  Similarity=0.259  Sum_probs=58.2

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC-----Cc---------chh---------hhccCCCCCCccee
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-----GE---------DIG---------MVCDMEQPLEIPVM   91 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~-----g~---------~~~---------~l~g~~~~~gi~v~   91 (163)
                      ..||.|+| +|.+|.++++.+. ..|+.=..++|.+..     ++         +++         .+..+.....+..+
T Consensus        19 ~s~VlviG-~gglGsevak~L~-~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~lNp~v~i~~~   96 (198)
T cd01485          19 SAKVLIIG-AGALGAEIAKNLV-LAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQELNPNVKLSIV   96 (198)
T ss_pred             hCcEEEEC-CCHHHHHHHHHHH-HcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHHHCCCCEEEEE
Confidence            46899999 5999999999997 678887778884311     10         000         00000001111111


Q ss_pred             --------CCHHHHHhcccccCCccEEEEccCchhH-HHHHHHHHHcCCcEEEeCC
Q 031216           92 --------SDLTMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP  138 (163)
Q Consensus        92 --------~~l~ell~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigtt  138 (163)
                              ++.++.+      .++|+|||++.+... ...-+.|.++++|+|.+.+
T Consensus        97 ~~~~~~~~~~~~~~~------~~~dvVi~~~d~~~~~~~ln~~c~~~~ip~i~~~~  146 (198)
T cd01485          97 EEDSLSNDSNIEEYL------QKFTLVIATEENYERTAKVNDVCRKHHIPFISCAT  146 (198)
T ss_pred             ecccccchhhHHHHH------hCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEe
Confidence                    1223344      378999988765444 4556888899999887655

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=96.17  E-value=0.052  Score=47.21  Aligned_cols=95  Identities=19%  Similarity=0.301  Sum_probs=57.5

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC----------------CCcc----hhhhc-cCCCCCCccee--
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS----------------VGED----IGMVC-DMEQPLEIPVM--   91 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~----------------~g~~----~~~l~-g~~~~~gi~v~--   91 (163)
                      ..||+|+| +|..|..+++.+. ..|+.=.-++|.+.                .|+.    +.+.+ .+.....+..+  
T Consensus       135 ~~~VlvvG-~GG~Gs~ia~~La-~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~~  212 (376)
T PRK08762        135 EARVLLIG-AGGLGSPAALYLA-AAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPDVQVEAVQE  212 (376)
T ss_pred             cCcEEEEC-CCHHHHHHHHHHH-HcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCCCEEEEEec
Confidence            46899999 5999999999987 56776666788531                1111    00000 00001111111  


Q ss_pred             ----CCHHHHHhcccccCCccEEEEccCchhH-HHHHHHHHHcCCcEEEeC
Q 031216           92 ----SDLTMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYV  137 (163)
Q Consensus        92 ----~~l~ell~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigt  137 (163)
                          .++++++.      ++|+|||++..... ...-..|.+.++|+|.+.
T Consensus       213 ~~~~~~~~~~~~------~~D~Vv~~~d~~~~r~~ln~~~~~~~ip~i~~~  257 (376)
T PRK08762        213 RVTSDNVEALLQ------DVDVVVDGADNFPTRYLLNDACVKLGKPLVYGA  257 (376)
T ss_pred             cCChHHHHHHHh------CCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence                12344553      89999999854333 455678999999998664

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.16  E-value=0.046  Score=48.50  Aligned_cols=85  Identities=18%  Similarity=0.160  Sum_probs=52.9

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCc--ch-hhhccCCCCCCccee--CCHHHHHhcccccCCccEE
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGE--DI-GMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAVV  110 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~--~~-~~l~g~~~~~gi~v~--~~l~ell~~~~~~~~~DVV  110 (163)
                      .||+|+| .|+.|+.+++.+. ..|.++.+ .|......  +. ..+.    +.|+.++  .+..+.+.      ++|+|
T Consensus        15 ~~i~v~G-~G~sG~a~a~~L~-~~G~~V~~-~D~~~~~~~~~~~~~l~----~~gi~~~~~~~~~~~~~------~~dlV   81 (458)
T PRK01710         15 KKVAVVG-IGVSNIPLIKFLV-KLGAKVTA-FDKKSEEELGEVSNELK----ELGVKLVLGENYLDKLD------GFDVI   81 (458)
T ss_pred             CeEEEEc-ccHHHHHHHHHHH-HCCCEEEE-ECCCCCccchHHHHHHH----hCCCEEEeCCCChHHhc------cCCEE
Confidence            5899999 6999999998876 66788664 77432111  00 1121    3455553  22333343      78988


Q ss_pred             EEccCch--hHHHHHHHHHHcCCcEEE
Q 031216          111 IDFTDAS--TVYDNVKQATAFGMRSVV  135 (163)
Q Consensus       111 IDfT~p~--~~~~~~~~al~~G~~vVi  135 (163)
                      | .| |.  ...+.+..|.+.|++++.
T Consensus        82 V-~S-pgi~~~~p~~~~a~~~~i~i~s  106 (458)
T PRK01710         82 F-KT-PSMRIDSPELVKAKEEGAYITS  106 (458)
T ss_pred             E-EC-CCCCCCchHHHHHHHcCCcEEe
Confidence            7 55 32  224678888899999864

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.14  E-value=0.015  Score=48.46  Aligned_cols=101  Identities=11%  Similarity=0.177  Sum_probs=56.4

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCC-cchhh----hc--cCC----C-------CCCcceeCCHHHH
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG-EDIGM----VC--DME----Q-------PLEIPVMSDLTMV   97 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g-~~~~~----l~--g~~----~-------~~gi~v~~~l~el   97 (163)
                      -||+|+| .|.||..++..+. ..+.++. ++|+.... +.+.+    +.  +..    .       ..++..+++++++
T Consensus         2 ~~V~VIG-~G~mG~~iA~~la-~~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~   78 (288)
T PRK09260          2 EKLVVVG-AGVMGRGIAYVFA-VSGFQTT-LVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAA   78 (288)
T ss_pred             cEEEEEC-ccHHHHHHHHHHH-hCCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHh
Confidence            4799999 5999999999887 4578877 46743110 00000    00  000    0       0124456788887


Q ss_pred             HhcccccCCccEEEEccCchhH--H-H---HHHHHHHcCCcEEEeCCCCCHHHHH
Q 031216           98 LGSISQSKARAVVIDFTDASTV--Y-D---NVKQATAFGMRSVVYVPHIQLETVS  146 (163)
Q Consensus        98 l~~~~~~~~~DVVIDfT~p~~~--~-~---~~~~al~~G~~vVigttg~~~e~~~  146 (163)
                      +.      ++|+||.+. |+..  . .   .+...+..+.-+++-++.++..+..
T Consensus        79 ~~------~aD~Vi~av-pe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l~  126 (288)
T PRK09260         79 VA------DADLVIEAV-PEKLELKKAVFETADAHAPAECYIATNTSTMSPTEIA  126 (288)
T ss_pred             hc------CCCEEEEec-cCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHH
Confidence            74      899999654 4332  1 1   2233334444444556677776543

>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]

Probab=96.13  E-value=0.07  Score=44.84  Aligned_cols=88  Identities=16%  Similarity=0.194  Sum_probs=54.1

Q ss_pred             CCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccE-
Q 031216           31 PPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV-  109 (163)
Q Consensus        31 ~~~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DV-  109 (163)
                      ++.++.++.|.|||+++|+++++.+. ..+..|+-+..+..   ++.++.           .++++...     .++++ 
T Consensus         2 ~~~~~~~~lITGASsGIG~~~A~~lA-~~g~~liLvaR~~~---kL~~la-----------~~l~~~~~-----v~v~vi   61 (265)
T COG0300           2 GPMKGKTALITGASSGIGAELAKQLA-RRGYNLILVARRED---KLEALA-----------KELEDKTG-----VEVEVI   61 (265)
T ss_pred             CCCCCcEEEEECCCchHHHHHHHHHH-HCCCEEEEEeCcHH---HHHHHH-----------HHHHHhhC-----ceEEEE
Confidence            34566789999999999999999987 57888886655421   111111           12222110     13332 


Q ss_pred             EEEccCchhHHHHHHHHHHc--CCcEEEeCC
Q 031216          110 VIDFTDASTVYDNVKQATAF--GMRSVVYVP  138 (163)
Q Consensus       110 VIDfT~p~~~~~~~~~al~~--G~~vVigtt  138 (163)
                      -+|.|.|+..........+.  .+.++|=.-
T Consensus        62 ~~DLs~~~~~~~l~~~l~~~~~~IdvLVNNA   92 (265)
T COG0300          62 PADLSDPEALERLEDELKERGGPIDVLVNNA   92 (265)
T ss_pred             ECcCCChhHHHHHHHHHHhcCCcccEEEECC
Confidence            45677777776666655555  577775443

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=96.12  E-value=0.055  Score=47.31  Aligned_cols=96  Identities=18%  Similarity=0.303  Sum_probs=58.9

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC-----CCc-------chh---------hhccCCCCCCccee--
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-----VGE-------DIG---------MVCDMEQPLEIPVM--   91 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~-----~g~-------~~~---------~l~g~~~~~gi~v~--   91 (163)
                      ..||.|+| .|.+|..++..+. ..|+.=+.++|.+.     .++       +++         .+..+.....+..+  
T Consensus        41 ~~~VliiG-~GglG~~v~~~La-~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~  118 (370)
T PRK05600         41 NARVLVIG-AGGLGCPAMQSLA-SAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNALRE  118 (370)
T ss_pred             CCcEEEEC-CCHHHHHHHHHHH-HcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEEeee
Confidence            46899999 5999999999987 56776666788431     111       110         00001001122222  


Q ss_pred             ----CCHHHHHhcccccCCccEEEEccCchhH-HHHHHHHHHcCCcEEEeCC
Q 031216           92 ----SDLTMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP  138 (163)
Q Consensus        92 ----~~l~ell~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigtt  138 (163)
                          .+.++++.      ++|+|||++..-.. .-.-..|.+.++|+|.+..
T Consensus       119 ~i~~~~~~~~~~------~~DlVid~~Dn~~~r~~in~~~~~~~iP~v~~~~  164 (370)
T PRK05600        119 RLTAENAVELLN------GVDLVLDGSDSFATKFLVADAAEITGTPLVWGTV  164 (370)
T ss_pred             ecCHHHHHHHHh------CCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEE
Confidence                23445553      89999999855444 4455788999999996654

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=96.10  E-value=0.076  Score=43.79  Aligned_cols=96  Identities=13%  Similarity=0.093  Sum_probs=52.2

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCC---CC--CCcceeCCHHHHHhcccccCCccEE
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDME---QP--LEIPVMSDLTMVLGSISQSKARAVV  110 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~---~~--~gi~v~~~l~ell~~~~~~~~~DVV  110 (163)
                      +||+|+| .|.||..++..+.+ .+.++..+..+...-+.+.+ .|..   ..  ..+...++++++       .++|+|
T Consensus         1 m~I~IiG-~G~~G~~~a~~L~~-~g~~V~~~~r~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~-------~~~d~v   70 (304)
T PRK06522          1 MKIAILG-AGAIGGLFGAALAQ-AGHDVTLVARRGAHLDALNE-NGLRLEDGEITVPVLAADDPAEL-------GPQDLV   70 (304)
T ss_pred             CEEEEEC-CCHHHHHHHHHHHh-CCCeEEEEECChHHHHHHHH-cCCcccCCceeecccCCCChhHc-------CCCCEE
Confidence            4899999 59999999999874 56776644332211000100 0110   00  011223455543       389999


Q ss_pred             EEccCchhHHHHHHHH---HHcCCcEEEeCCCCC
Q 031216          111 IDFTDASTVYDNVKQA---TAFGMRSVVYVPHIQ  141 (163)
Q Consensus       111 IDfT~p~~~~~~~~~a---l~~G~~vVigttg~~  141 (163)
                      |.++.+....+.+...   +..+..+|+-..|+.
T Consensus        71 ila~k~~~~~~~~~~l~~~l~~~~~iv~~~nG~~  104 (304)
T PRK06522         71 ILAVKAYQLPAALPSLAPLLGPDTPVLFLQNGVG  104 (304)
T ss_pred             EEecccccHHHHHHHHhhhcCCCCEEEEecCCCC
Confidence            9676555444444333   334456766555775

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=96.10  E-value=0.048  Score=49.36  Aligned_cols=93  Identities=11%  Similarity=0.064  Sum_probs=55.4

Q ss_pred             ccCCCCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCC
Q 031216           27 CSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKA  106 (163)
Q Consensus        27 ~~~~~~~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~  106 (163)
                      ++++..-.-.+|+|+| .|++|+.+++.+. .-+++++ ++++...  ...+..    ..|.. +.++++++.      .
T Consensus       246 R~~~~~LaGKtVgVIG-~G~IGr~vA~rL~-a~Ga~Vi-V~e~dp~--~a~~A~----~~G~~-~~~leell~------~  309 (476)
T PTZ00075        246 RATDVMIAGKTVVVCG-YGDVGKGCAQALR-GFGARVV-VTEIDPI--CALQAA----MEGYQ-VVTLEDVVE------T  309 (476)
T ss_pred             HhcCCCcCCCEEEEEC-CCHHHHHHHHHHH-HCCCEEE-EEeCCch--hHHHHH----hcCce-eccHHHHHh------c
Confidence            3445455567999999 7999999999987 4678855 4654321  110100    12333 247888875      8


Q ss_pred             ccEEEEccCc-hhHHHHHHHHHHcCCcEEE
Q 031216          107 RAVVIDFTDA-STVYDNVKQATAFGMRSVV  135 (163)
Q Consensus       107 ~DVVIDfT~p-~~~~~~~~~al~~G~~vVi  135 (163)
                      .|+||..+-. ..........++.|.-++.
T Consensus       310 ADIVI~atGt~~iI~~e~~~~MKpGAiLIN  339 (476)
T PTZ00075        310 ADIFVTATGNKDIITLEHMRRMKNNAIVGN  339 (476)
T ss_pred             CCEEEECCCcccccCHHHHhccCCCcEEEE
Confidence            9999987633 2222344444555554443

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=96.08  E-value=0.047  Score=47.58  Aligned_cols=35  Identities=26%  Similarity=0.473  Sum_probs=29.4

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~   69 (163)
                      .++||.|+|++|.+|+.+++.+.+ .+.+++++..+
T Consensus        59 ~~~kVLVtGatG~IG~~l~~~Ll~-~G~~V~~l~R~   93 (390)
T PLN02657         59 KDVTVLVVGATGYIGKFVVRELVR-RGYNVVAVARE   93 (390)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHH-CCCEEEEEEec
Confidence            357999999999999999999875 58898876653

>PRK10124 putative UDP-glucose lipid carrier transferase; Provisional

Probab=96.05  E-value=0.059  Score=48.31  Aligned_cols=84  Identities=15%  Similarity=0.107  Sum_probs=58.8

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcC--CcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHH---HHhcccccCCccE
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKAR--GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTM---VLGSISQSKARAV  109 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~--~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~e---ll~~~~~~~~~DV  109 (163)
                      .-|+.|+| .|..|+.+++.+.+++  +.+++|.+|.+..+           ..+++++.+.++   ...    ..++|-
T Consensus       143 ~rrVLIvG-aG~~g~~l~~~L~~~~~~g~~vVGfiDdd~~~-----------g~~VpvlG~~~dL~~~v~----~~~Ide  206 (463)
T PRK10124        143 KRMVAVAG-DLPAGQMLLESFRNEPWLGFEVVGVYHDPKPG-----------GVSNDWAGNLQQLVEDAK----AGKIHN  206 (463)
T ss_pred             CCcEEEEE-CCHHHHHHHHHHhcCccCCeEEEEEEeCCccc-----------cCCCCcCCCHHHHHHHHH----hCCCCE
Confidence            35799999 5999999999998776  68999999954211           123445656554   444    368998


Q ss_pred             EEEccCc----hhHHHHHHHHHHcCCcEEE
Q 031216          110 VIDFTDA----STVYDNVKQATAFGMRSVV  135 (163)
Q Consensus       110 VIDfT~p----~~~~~~~~~al~~G~~vVi  135 (163)
                      |+- +.|    +...+.+..|.+.|+++.+
T Consensus       207 ViI-Aip~~~~~~l~ell~~~~~~~v~V~i  235 (463)
T PRK10124        207 VYI-AMSMCDGARVKKLVRQLADTTCSVLL  235 (463)
T ss_pred             EEE-eCCCcchHHHHHHHHHHHHcCCeEEE
Confidence            774 433    2335667788899998776

>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family

Probab=96.05  E-value=0.11  Score=39.74  Aligned_cols=85  Identities=21%  Similarity=0.253  Sum_probs=53.6

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCcc-EEEEccC
Q 031216           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFTD  115 (163)
Q Consensus        37 rV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~D-VVIDfT~  115 (163)
                      ++.|+| .|..|+.+++.+.+ .+++++|.+|....  ..++.     -.++|++.+++++...   ..+.+ +++....
T Consensus         1 ~~~I~G-ag~~g~~~~~~l~~-~g~~vvgfid~~~~--~~~~~-----i~g~pvlg~~~~l~~~---~~~~~~~iiai~~   68 (201)
T TIGR03570         1 KLVIIG-AGGHGRVVADIAED-SGWEIVGFLDDNPA--LQGTS-----VDGLPVLGGDEDLLRY---PPDEVDLVVAIGD   68 (201)
T ss_pred             CEEEEc-CCHHHHHHHHHHHh-CCCEEEEEEcCCcc--ccCcc-----cCCccEECCHHHHhhh---cccccEEEEEcCC
Confidence            589999 49999999999874 69999999996421  01111     2467788777665431   02334 4443334


Q ss_pred             chhHHHHHHHHHHcCCcE
Q 031216          116 ASTVYDNVKQATAFGMRS  133 (163)
Q Consensus       116 p~~~~~~~~~al~~G~~v  133 (163)
                      +....+....+.+.+..+
T Consensus        69 ~~~~~~i~~~l~~~g~~~   86 (201)
T TIGR03570        69 NKLRRRLFEKLKAKGYRF   86 (201)
T ss_pred             HHHHHHHHHHHHhCCCcc
Confidence            444456666666666544

These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=96.04  E-value=0.11  Score=43.97  Aligned_cols=107  Identities=16%  Similarity=0.198  Sum_probs=56.9

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCC--C---------CCCcceeCCHHHHHhccc
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDME--Q---------PLEIPVMSDLTMVLGSIS  102 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~--~---------~~gi~v~~~l~ell~~~~  102 (163)
                      +|+||+|+| .|.||..++..+.+ .+.++.. ++++..-+.+.+ .+..  .         ...+...++. +.+    
T Consensus         1 ~~mkI~IiG-~G~mG~~~A~~L~~-~G~~V~~-~~r~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~----   71 (341)
T PRK08229          1 MMARICVLG-AGSIGCYLGGRLAA-AGADVTL-IGRARIGDELRA-HGLTLTDYRGRDVRVPPSAIAFSTDP-AAL----   71 (341)
T ss_pred             CCceEEEEC-CCHHHHHHHHHHHh-cCCcEEE-EecHHHHHHHHh-cCceeecCCCcceecccceeEeccCh-hhc----
Confidence            368999999 59999999999875 4778775 454211000000 0100  0         0012233454 333    


Q ss_pred             ccCCccEEEEccCchhHHHHHHH---HHHcCCcEEEeCCCCCHHHHHHHHHHhh
Q 031216          103 QSKARAVVIDFTDASTVYDNVKQ---ATAFGMRSVVYVPHIQLETVSALSAFCD  153 (163)
Q Consensus       103 ~~~~~DVVIDfT~p~~~~~~~~~---al~~G~~vVigttg~~~e~~~~L~~~A~  153 (163)
                        .++|+||.++.+....+.+..   .+..+..++.-+.|++..  +.|.+...
T Consensus        72 --~~~D~vil~vk~~~~~~~~~~l~~~~~~~~iii~~~nG~~~~--~~l~~~~~  121 (341)
T PRK08229         72 --ATADLVLVTVKSAATADAAAALAGHARPGAVVVSFQNGVRNA--DVLRAALP  121 (341)
T ss_pred             --cCCCEEEEEecCcchHHHHHHHHhhCCCCCEEEEeCCCCCcH--HHHHHhCC
Confidence              489999976655444443333   333445455545577532  33544433

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=96.02  E-value=0.058  Score=46.04  Aligned_cols=63  Identities=14%  Similarity=0.179  Sum_probs=42.2

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT  114 (163)
                      -.+|+|+| +|.||+.+++.+. .=|+++.+ +|+...  ....+.    .  ..-+.++++++.      ..|+|+...
T Consensus       136 g~tvgIvG-~G~IG~~vA~~l~-afG~~V~~-~~~~~~--~~~~~~----~--~~~~~~l~e~l~------~aDvvv~~l  198 (312)
T PRK15469        136 DFTIGILG-AGVLGSKVAQSLQ-TWGFPLRC-WSRSRK--SWPGVQ----S--FAGREELSAFLS------QTRVLINLL  198 (312)
T ss_pred             CCEEEEEC-CCHHHHHHHHHHH-HCCCEEEE-EeCCCC--CCCCce----e--ecccccHHHHHh------cCCEEEECC
Confidence            36899999 7999999999987 46899885 554321  100000    0  111368899985      899988543

>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]

Probab=96.01  E-value=0.056  Score=46.51  Aligned_cols=92  Identities=22%  Similarity=0.301  Sum_probs=57.1

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccC---CCCCCcceeCCHHHHHhcccccCCccEEEE
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDM---EQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~---~~~~gi~v~~~l~ell~~~~~~~~~DVVID  112 (163)
                      ++|.|.|+.|++|+-.+..+.+ .|.+++ ++|+-..|.... +...   ....++.=..-+++++++    .++|+||.
T Consensus         1 ~~iLVtGGAGYIGSHtv~~Ll~-~G~~vv-V~DNL~~g~~~~-v~~~~~~f~~gDi~D~~~L~~vf~~----~~idaViH   73 (329)
T COG1087           1 MKVLVTGGAGYIGSHTVRQLLK-TGHEVV-VLDNLSNGHKIA-LLKLQFKFYEGDLLDRALLTAVFEE----NKIDAVVH   73 (329)
T ss_pred             CeEEEecCcchhHHHHHHHHHH-CCCeEE-EEecCCCCCHHH-hhhccCceEEeccccHHHHHHHHHh----cCCCEEEE
Confidence            5799999999999999999885 899988 678533332211 1100   000111101235667764    89999999


Q ss_pred             cc----Cch--------------hHHHHHHHHHHcCCcEE
Q 031216          113 FT----DAS--------------TVYDNVKQATAFGMRSV  134 (163)
Q Consensus       113 fT----~p~--------------~~~~~~~~al~~G~~vV  134 (163)
                      |.    .++              .....++.+.++|+.-+
T Consensus        74 FAa~~~VgESv~~Pl~Yy~NNv~gTl~Ll~am~~~gv~~~  113 (329)
T COG1087          74 FAASISVGESVQNPLKYYDNNVVGTLNLIEAMLQTGVKKF  113 (329)
T ss_pred             CccccccchhhhCHHHHHhhchHhHHHHHHHHHHhCCCEE
Confidence            96    222              23455677788886544

>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=95.99  E-value=0.029  Score=51.63  Aligned_cols=89  Identities=13%  Similarity=0.192  Sum_probs=61.8

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCH--HHHHhcccccCCccEEEE
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDL--TMVLGSISQSKARAVVID  112 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l--~ell~~~~~~~~~DVVID  112 (163)
                      ..|+.|+|| |.-|..+++.+...+....||.+|.+.      .+.|.. =.|++|+...  +++.+    +...|-++.
T Consensus       116 ~~r~lIiGA-G~ag~~l~r~~~~~~~~~pV~fiDdd~------~~~g~~-i~Gv~V~g~~~i~~~v~----~~~~~~iii  183 (588)
T COG1086         116 RIRLLIIGA-GSAGDLLLRALRRDPEYTPVAFLDDDP------DLTGMK-IRGVPVLGRIEIERVVE----ELGIQLILI  183 (588)
T ss_pred             CCceEEEcC-chHHHHHHHHHHhCCCcceEEEECCCh------hhcCCE-EeceeeechhHHHHHHH----HcCCceEEE
Confidence            489999996 999999999999999999999999542      112211 2367787544  44554    367775443


Q ss_pred             cc---CchhHHHHHHHHHHcCCcEEE
Q 031216          113 FT---DASTVYDNVKQATAFGMRSVV  135 (163)
Q Consensus       113 fT---~p~~~~~~~~~al~~G~~vVi  135 (163)
                      +-   .++...+.++.+-+.|+++=+
T Consensus       184 Aips~~~~~~~~i~~~l~~~~~~v~~  209 (588)
T COG1086         184 AIPSASQEERRRILLRLARTGIAVRI  209 (588)
T ss_pred             ecCCCCHHHHHHHHHHHHhcCCcEEe
Confidence            32   344456777888888877654

>PRK06091 membrane protein FdrA; Validated

Probab=95.97  E-value=0.042  Score=50.50  Aligned_cols=72  Identities=8%  Similarity=0.115  Sum_probs=60.7

Q ss_pred             CcceeCCHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeEEcC
Q 031216           87 EIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVSTG  161 (163)
Q Consensus        87 gi~v~~~l~ell~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv~tg  161 (163)
                      .++.+.++.++...+   +++|+++.+.++..+.+.++.|++.|+++++=+.|+..++..+|.++|++.++..-|
T Consensus       101 ~~~~~~t~~~a~~~l---pe~DLAvIsVPa~~v~~al~ea~~~G~~viI~S~gfg~~~E~~L~e~Ar~~GlrvmG  172 (555)
T PRK06091        101 SLTQVRRWDSACQKL---PDANLALISVAGEYAAELAEQALDRNLNVMMFSDNVTLEDEIRLKTRAREKGLLVMG  172 (555)
T ss_pred             CCcccccHHHHHhcC---CCCCEEEEecCHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHHHcCCEEEC
Confidence            466788999888642   467998877777778899999999999999988899888889999999999987655

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=95.96  E-value=0.033  Score=46.44  Aligned_cols=31  Identities=16%  Similarity=0.280  Sum_probs=25.2

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~   69 (163)
                      .||+|+| .|.||..++..+. ..+.+++ ++|+
T Consensus         4 ~~I~ViG-aG~mG~~iA~~la-~~G~~V~-l~d~   34 (291)
T PRK06035          4 KVIGVVG-SGVMGQGIAQVFA-RTGYDVT-IVDV   34 (291)
T ss_pred             cEEEEEC-ccHHHHHHHHHHH-hcCCeEE-EEeC
Confidence            5799999 5999999999887 4588866 4674

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=95.96  E-value=0.049  Score=48.43  Aligned_cols=96  Identities=10%  Similarity=0.118  Sum_probs=58.8

Q ss_pred             eeccCCCCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhccccc
Q 031216           25 ISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQS  104 (163)
Q Consensus        25 ~~~~~~~~~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~  104 (163)
                      |.+.++....--+|+|+| +|.+|+.+++.+. .-|++++. +|....  +.....    ..|..++ ++++++.     
T Consensus       192 i~r~t~~~l~GktVvViG-~G~IG~~va~~ak-~~Ga~ViV-~d~d~~--R~~~A~----~~G~~~~-~~~e~v~-----  256 (413)
T cd00401         192 IKRATDVMIAGKVAVVAG-YGDVGKGCAQSLR-GQGARVIV-TEVDPI--CALQAA----MEGYEVM-TMEEAVK-----  256 (413)
T ss_pred             HHHhcCCCCCCCEEEEEC-CCHHHHHHHHHHH-HCCCEEEE-EECChh--hHHHHH----hcCCEEc-cHHHHHc-----
Confidence            344556544557899999 6999999999876 55778654 674321  111111    2343332 4566663     


Q ss_pred             CCccEEEEccCchhHH-HHHHHHHHcCCcEE-Ee
Q 031216          105 KARAVVIDFTDASTVY-DNVKQATAFGMRSV-VY  136 (163)
Q Consensus       105 ~~~DVVIDfT~p~~~~-~~~~~al~~G~~vV-ig  136 (163)
                       ..|+||++|-..... .-...+++.|.-++ +|
T Consensus       257 -~aDVVI~atG~~~~i~~~~l~~mk~GgilvnvG  289 (413)
T cd00401         257 -EGDIFVTTTGNKDIITGEHFEQMKDGAIVCNIG  289 (413)
T ss_pred             -CCCEEEECCCCHHHHHHHHHhcCCCCcEEEEeC
Confidence             789999988544443 33356677776654 44

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase

Probab=95.95  E-value=0.062  Score=44.06  Aligned_cols=30  Identities=27%  Similarity=0.529  Sum_probs=23.6

Q ss_pred             EEEEcCCCHHHHHHHHHHHhcCCc-EEEEEEec
Q 031216           38 VIINGAVKEIGRAAVIAVTKARGM-EVAGAIDS   69 (163)
Q Consensus        38 V~VvGa~G~mG~~i~~~i~~~~~~-eLvgvid~   69 (163)
                      |.|+|++|.+|+.+++.+.+. +. ++++ +++
T Consensus         1 ilItGatG~iG~~l~~~L~~~-g~~~v~~-~~~   31 (314)
T TIGR02197         1 IIVTGGAGFIGSNLVKALNER-GITDILV-VDN   31 (314)
T ss_pred             CEEeCCcchhhHHHHHHHHHc-CCceEEE-Eec
Confidence            579999999999999999865 55 5654 453

This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).

>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional

Probab=95.94  E-value=0.025  Score=47.63  Aligned_cols=34  Identities=24%  Similarity=0.300  Sum_probs=28.1

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~   69 (163)
                      |.||.|+|++|.+|+.+++.+.+ .+.+++.++++
T Consensus         1 ~~~vlVtGatGfIG~~l~~~L~~-~g~~~v~~~~~   34 (355)
T PRK10217          1 MRKILITGGAGFIGSALVRYIIN-ETSDAVVVVDK   34 (355)
T ss_pred             CcEEEEEcCCcHHHHHHHHHHHH-cCCCEEEEEec
Confidence            56899999999999999999985 56666666664

>PLN00198 anthocyanidin reductase; Provisional

Probab=95.93  E-value=0.037  Score=46.44  Aligned_cols=39  Identities=13%  Similarity=0.214  Sum_probs=32.1

Q ss_pred             CCCCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031216           29 TNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (163)
Q Consensus        29 ~~~~~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid   68 (163)
                      +-+|.++.+|.|.|++|.+|+.+++.+.+ .+.+++++..
T Consensus         3 ~~~~~~~~~vlItG~~GfIG~~l~~~L~~-~g~~V~~~~r   41 (338)
T PLN00198          3 TLTPTGKKTACVIGGTGFLASLLIKLLLQ-KGYAVNTTVR   41 (338)
T ss_pred             cccCCCCCeEEEECCchHHHHHHHHHHHH-CCCEEEEEEC
Confidence            45666778999999999999999999985 5788876554

>TIGR03466 HpnA hopanoid-associated sugar epimerase

Probab=95.92  E-value=0.042  Score=45.17  Aligned_cols=33  Identities=30%  Similarity=0.448  Sum_probs=27.2

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~   69 (163)
                      ++|.|+|++|.+|+.+++.+.+ .+.++.++..+
T Consensus         1 ~~vlItG~~G~iG~~l~~~L~~-~g~~V~~~~r~   33 (328)
T TIGR03466         1 MKVLVTGATGFVGSAVVRLLLE-QGEEVRVLVRP   33 (328)
T ss_pred             CeEEEECCccchhHHHHHHHHH-CCCEEEEEEec
Confidence            3799999999999999999885 47888766543

The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.

>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1

Probab=95.91  E-value=0.088  Score=44.62  Aligned_cols=96  Identities=18%  Similarity=0.208  Sum_probs=58.7

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC-----C-------cchh---------hhccCCCCCCcceeC-
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-----G-------EDIG---------MVCDMEQPLEIPVMS-   92 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~-----g-------~~~~---------~l~g~~~~~gi~v~~-   92 (163)
                      ..||.|+| .|.+|.++++.+. ..|+.=+.++|.+..     +       .|++         .+..+.....+.+++ 
T Consensus        19 ~s~VLIvG-~gGLG~EiaKnLa-laGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eLNp~V~V~~~~~   96 (286)
T cd01491          19 KSNVLISG-LGGLGVEIAKNLI-LAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELNPYVPVTVSTG   96 (286)
T ss_pred             cCcEEEEc-CCHHHHHHHHHHH-HcCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHHCCCCEEEEEec
Confidence            36899999 5999999999997 789988889995321     0       0110         011110011222222 


Q ss_pred             CH-HHHHhcccccCCccEEEEccCchhH-HHHHHHHHHcCCcEEEeCC
Q 031216           93 DL-TMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP  138 (163)
Q Consensus        93 ~l-~ell~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigtt  138 (163)
                      .+ ++.+      .++|+||+...+... ...-+.|.++++++|.+-+
T Consensus        97 ~~~~~~l------~~fdvVV~~~~~~~~~~~in~~c~~~~ipfI~a~~  138 (286)
T cd01491          97 PLTTDEL------LKFQVVVLTDASLEDQLKINEFCHSPGIKFISADT  138 (286)
T ss_pred             cCCHHHH------hcCCEEEEecCCHHHHHHHHHHHHHcCCEEEEEec
Confidence            22 3344      378888877654433 4555788888999886554

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.

>PRK14030 glutamate dehydrogenase; Provisional

Probab=95.91  E-value=0.11  Score=46.67  Aligned_cols=116  Identities=11%  Similarity=0.101  Sum_probs=76.7

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhh---ccCCC-----------CC-CcceeCC
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMV---CDMEQ-----------PL-EIPVMSD   93 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~-----~~g~~~~~l---~g~~~-----------~~-gi~v~~~   93 (163)
                      +..||+|-| .|++|+..++.+. ..|.+|+++.|+.     +.|.|..++   .....           .+ +.... +
T Consensus       227 ~g~~vaIQG-fGnVG~~aA~~L~-e~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~ga~~i-~  303 (445)
T PRK14030        227 KGKTVAISG-FGNVAWGAATKAT-ELGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFPGSTFF-A  303 (445)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHH-HCCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCCCCEEc-C
Confidence            347999999 7999999999986 5799999998842     456665442   11100           11 22222 4


Q ss_pred             HHHHHhcccccCCccEEEEccCchhH-HHHHHHHHHcCCcEEEeCC-C-CCHHHHHHHHHHhhhcCeEEcC
Q 031216           94 LTMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP-H-IQLETVSALSAFCDKASMVSTG  161 (163)
Q Consensus        94 l~ell~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigtt-g-~~~e~~~~L~~~A~~~~Vv~tg  161 (163)
                      .++++.     .++||++=+...... .+++....+.+..+|+|-. + .+++..+.|    ++.+|++.+
T Consensus       304 ~~~~~~-----~~cDVliPcAl~n~I~~~na~~l~~~~ak~V~EgAN~p~t~eA~~iL----~~rGI~~vP  365 (445)
T PRK14030        304 GKKPWE-----QKVDIALPCATQNELNGEDADKLIKNGVLCVAEVSNMGCTAEAIDKF----IAAKQLFAP  365 (445)
T ss_pred             Ccccee-----ccccEEeeccccccCCHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHH----HHCCCEEeC
Confidence            466665     589999966654444 6788888888999999887 2 344443333    455777643

>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]

Probab=95.90  E-value=0.084  Score=46.91  Aligned_cols=113  Identities=18%  Similarity=0.192  Sum_probs=70.6

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhhccCC-------CCCCcceeCCHHHHHhcc
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMVCDME-------QPLEIPVMSDLTMVLGSI  101 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~-----~~g~~~~~l~g~~-------~~~gi~v~~~l~ell~~~  101 (163)
                      +..||+|-| +|+.|+..++.+.+. |.+|+++.|+.     ..|-|...+....       ...+.... +-++++.  
T Consensus       206 ~G~rVaVQG-~GNVg~~aa~~l~~~-GAkvva~sds~g~i~~~~Gld~~~l~~~~~~~~~v~~~~ga~~i-~~~e~~~--  280 (411)
T COG0334         206 EGARVAVQG-FGNVGQYAAEKLHEL-GAKVVAVSDSKGGIYDEDGLDVEALLELKERRGSVAEYAGAEYI-TNEELLE--  280 (411)
T ss_pred             CCCEEEEEC-ccHHHHHHHHHHHHc-CCEEEEEEcCCCceecCCCCCHHHHHHHhhhhhhHHhhcCceEc-ccccccc--
Confidence            558999999 799999999999755 99999999853     3455544443211       01122222 3367776  


Q ss_pred             cccCCccEEEEccCchhH-HHHHHHHHHcCCcEEEeCC--CCCHHHHHHHHHHhhhcCeEEcC
Q 031216          102 SQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMVSTG  161 (163)
Q Consensus       102 ~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigtt--g~~~e~~~~L~~~A~~~~Vv~tg  161 (163)
                         .++|+++=+...+.. .+++.....+   +|.|-.  .++++..+.+.    +.||++.+
T Consensus       281 ---~~cDIl~PcA~~n~I~~~na~~l~ak---~V~EgAN~P~t~eA~~i~~----erGIl~~P  333 (411)
T COG0334         281 ---VDCDILIPCALENVITEDNADQLKAK---IVVEGANGPTTPEADEILL----ERGILVVP  333 (411)
T ss_pred             ---ccCcEEcccccccccchhhHHHhhhc---EEEeccCCCCCHHHHHHHH----HCCCEEcC
Confidence               589998855544443 3444443333   777665  35555434333    77888754

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=95.90  E-value=0.056  Score=49.20  Aligned_cols=64  Identities=20%  Similarity=0.240  Sum_probs=44.8

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT  114 (163)
                      -.+|+|+| .|+||+.+++.+. .-++++.+ +|+... .+...      ..++..++++++++.      .+|+|+...
T Consensus       138 gktvgIiG-~G~IG~~vA~~l~-~fG~~V~~-~d~~~~-~~~~~------~~g~~~~~~l~ell~------~aDvV~l~l  201 (525)
T TIGR01327       138 GKTLGVIG-LGRIGSIVAKRAK-AFGMKVLA-YDPYIS-PERAE------QLGVELVDDLDELLA------RADFITVHT  201 (525)
T ss_pred             CCEEEEEC-CCHHHHHHHHHHH-hCCCEEEE-ECCCCC-hhHHH------hcCCEEcCCHHHHHh------hCCEEEEcc
Confidence            36899999 7999999999987 45888875 564311 11111      234444578999985      899988554

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>TIGR03023 WcaJ_sugtrans Undecaprenyl-phosphate glucose phosphotransferase

Probab=95.90  E-value=0.081  Score=46.77  Aligned_cols=91  Identities=15%  Similarity=0.176  Sum_probs=61.1

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcC--CcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEE
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKAR--GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~--~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVID  112 (163)
                      ..|+.|+| .|..|+.+++.+.+++  +++++|.+|.+...  .+.      ..+++++.+.+++.+ ..++.++|.|+.
T Consensus       128 ~~rvLIiG-ag~~~~~l~~~L~~~~~~g~~vvG~idd~~~~--~~~------~~gvpVlg~~~dl~~-~i~~~~vd~ViI  197 (451)
T TIGR03023       128 LRRVLIVG-AGELGRRLAERLARNPELGYRVVGFFDDRPDA--RTG------VRGVPVLGKLDDLEE-LIREGEVDEVYI  197 (451)
T ss_pred             CCcEEEEe-CCHHHHHHHHHHHhCccCCcEEEEEEeCCCcc--ccc------cCCCCccCCHHHHHH-HHHhcCCCEEEE
Confidence            36799999 5999999999998755  58999999953211  111      246777766554322 112378998874


Q ss_pred             ccCc---hhHHHHHHHHHHcCCcEEE
Q 031216          113 FTDA---STVYDNVKQATAFGMRSVV  135 (163)
Q Consensus       113 fT~p---~~~~~~~~~al~~G~~vVi  135 (163)
                      ..+.   +...+.+..|.+.|+++.+
T Consensus       198 A~p~~~~~~~~~ll~~~~~~gv~V~v  223 (451)
T TIGR03023       198 ALPLAAEDRILELLDALEDLTVDVRL  223 (451)
T ss_pred             eeCcccHHHHHHHHHHHHhcCCEEEE
Confidence            4422   2345677888899998776

Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier, knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity.

>TIGR03025 EPS_sugtrans exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase

Probab=95.89  E-value=0.077  Score=46.82  Aligned_cols=90  Identities=19%  Similarity=0.241  Sum_probs=61.2

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcC--CcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEE
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKAR--GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~--~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVID  112 (163)
                      ..|+.|+| .|..|..+++.+.+++  +.+++|.+|.+...  ...      -.++|++.+.+++.+ +.++.++|.|+-
T Consensus       125 ~~rvLIvG-ag~~a~~l~~~L~~~~~~g~~vvG~idd~~~~--~~~------i~g~pVlg~~~~l~~-~i~~~~id~ViI  194 (445)
T TIGR03025       125 LRRVLIVG-TGEAARELAAALSRNPDLGYRVVGFVDDRPSD--RVE------VAGLPVLGKLDDLVE-LVRAHRVDEVII  194 (445)
T ss_pred             CCcEEEEE-CCHHHHHHHHHHhhCccCCeEEEEEEeCCccc--ccc------cCCCcccCCHHHHHH-HHHhCCCCEEEE
Confidence            35799999 5999999999998765  68999999853211  111      246777766655332 112368998774


Q ss_pred             ccCch----hHHHHHHHHHHcCCcEEE
Q 031216          113 FTDAS----TVYDNVKQATAFGMRSVV  135 (163)
Q Consensus       113 fT~p~----~~~~~~~~al~~G~~vVi  135 (163)
                      . .|.    ...+.+..|.+.|+++.+
T Consensus       195 a-~p~~~~~~~~~ll~~~~~~gv~V~~  220 (445)
T TIGR03025       195 A-LPLSEEARILELLLQLRDLGVDVRL  220 (445)
T ss_pred             e-cCcccHHHHHHHHHHHHhcCCEEEE
Confidence            4 333    234678889999998876

Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model.

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.89  E-value=0.085  Score=46.28  Aligned_cols=85  Identities=20%  Similarity=0.163  Sum_probs=51.8

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcch----hhhccCCCCCCccee--CCHHHHHhcccccCCccE
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDI----GMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAV  109 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~----~~l~g~~~~~gi~v~--~~l~ell~~~~~~~~~DV  109 (163)
                      .+|.|+|+ |++|..+++.+. ..|.++++ +|+... .+.    .++.    +.++.++  +..++..      .++|+
T Consensus         6 k~v~iiG~-g~~G~~~A~~l~-~~G~~V~~-~d~~~~-~~~~~~~~~l~----~~~~~~~~~~~~~~~~------~~~d~   71 (450)
T PRK14106          6 KKVLVVGA-GVSGLALAKFLK-KLGAKVIL-TDEKEE-DQLKEALEELG----ELGIELVLGEYPEEFL------EGVDL   71 (450)
T ss_pred             CEEEEECC-CHHHHHHHHHHH-HCCCEEEE-EeCCch-HHHHHHHHHHH----hcCCEEEeCCcchhHh------hcCCE
Confidence            68999995 889999999987 67888874 564321 111    2221    2233332  2333433      37999


Q ss_pred             EEEccCchhHHHHHHHHHHcCCcEE
Q 031216          110 VIDFTDASTVYDNVKQATAFGMRSV  134 (163)
Q Consensus       110 VIDfT~p~~~~~~~~~al~~G~~vV  134 (163)
                      ||..+......+.+..|.+.|++++
T Consensus        72 vv~~~g~~~~~~~~~~a~~~~i~~~   96 (450)
T PRK14106         72 VVVSPGVPLDSPPVVQAHKKGIEVI   96 (450)
T ss_pred             EEECCCCCCCCHHHHHHHHCCCcEE
Confidence            8866543333456667777777765

>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional

Probab=95.89  E-value=0.078  Score=45.00  Aligned_cols=33  Identities=18%  Similarity=0.160  Sum_probs=28.4

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvi   67 (163)
                      +++||.|+|++|.+|+.+++.+.+. +.+++++.
T Consensus        14 ~~~~vlVtGatGfiG~~lv~~L~~~-g~~V~~~d   46 (348)
T PRK15181         14 APKRWLITGVAGFIGSGLLEELLFL-NQTVIGLD   46 (348)
T ss_pred             cCCEEEEECCccHHHHHHHHHHHHC-CCEEEEEe
Confidence            4689999999999999999999854 78888654

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=95.87  E-value=0.17  Score=42.63  Aligned_cols=109  Identities=12%  Similarity=0.050  Sum_probs=56.4

Q ss_pred             CCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC-----CCcchhhhccCCCCCCcceeCCHHHHHhcccccCCc
Q 031216           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-----VGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKAR  107 (163)
Q Consensus        33 ~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~-----~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~  107 (163)
                      ..++||+|+| .|.||..++..+.+ .+.++.-+.....     .|.......+......+.++++.++ .      ..+
T Consensus         3 ~~~m~I~IiG-~GaiG~~lA~~L~~-~g~~V~~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~------~~~   73 (313)
T PRK06249          3 SETPRIGIIG-TGAIGGFYGAMLAR-AGFDVHFLLRSDYEAVRENGLQVDSVHGDFHLPPVQAYRSAED-M------PPC   73 (313)
T ss_pred             CcCcEEEEEC-CCHHHHHHHHHHHH-CCCeEEEEEeCCHHHHHhCCeEEEeCCCCeeecCceEEcchhh-c------CCC
Confidence            3457999999 59999999998875 5677775544221     1111110001000001234445443 2      489


Q ss_pred             cEEEEccCchhHH---HHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHh
Q 031216          108 AVVIDFTDASTVY---DNVKQATAFGMRSVVYVPHIQLETVSALSAFC  152 (163)
Q Consensus       108 DVVIDfT~p~~~~---~~~~~al~~G~~vVigttg~~~e~~~~L~~~A  152 (163)
                      |+||.++......   +.+...+..+..+|.-.-|+..  .+.|.+..
T Consensus        74 D~vilavK~~~~~~~~~~l~~~~~~~~~iv~lqNG~~~--~e~l~~~~  119 (313)
T PRK06249         74 DWVLVGLKTTANALLAPLIPQVAAPDAKVLLLQNGLGV--EEQLREIL  119 (313)
T ss_pred             CEEEEEecCCChHhHHHHHhhhcCCCCEEEEecCCCCc--HHHHHHHC
Confidence            9998665333333   3333344445455554447753  23444443

>PLN02214 cinnamoyl-CoA reductase

Probab=95.86  E-value=0.092  Score=44.57  Aligned_cols=34  Identities=26%  Similarity=0.329  Sum_probs=28.7

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid   68 (163)
                      ++.+|.|+|++|.+|+.+++.+.+ .+.++++...
T Consensus         9 ~~~~vlVTGatGfIG~~l~~~L~~-~G~~V~~~~r   42 (342)
T PLN02214          9 AGKTVCVTGAGGYIASWIVKILLE-RGYTVKGTVR   42 (342)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHH-CcCEEEEEeC
Confidence            356899999999999999999874 5889887654

>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase

Probab=95.84  E-value=0.099  Score=42.56  Aligned_cols=30  Identities=20%  Similarity=0.283  Sum_probs=25.1

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcC-CcEEEEE
Q 031216           37 KVIINGAVKEIGRAAVIAVTKAR-GMEVAGA   66 (163)
Q Consensus        37 rV~VvGa~G~mG~~i~~~i~~~~-~~eLvgv   66 (163)
                      ||.|+|++|.+|+.+++.+.+.. +.+++++
T Consensus         1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~   31 (317)
T TIGR01181         1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVL   31 (317)
T ss_pred             CEEEEcCCchHHHHHHHHHHHhCCCCEEEEe
Confidence            68999999999999999988654 4788754

This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.

>PRK05086 malate dehydrogenase; Provisional

Probab=95.78  E-value=0.15  Score=43.51  Aligned_cols=35  Identities=23%  Similarity=0.242  Sum_probs=26.0

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHh-cCCcEEEEEEecC
Q 031216           36 IKVIINGAVKEIGRAAVIAVTK-ARGMEVAGAIDSH   70 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~-~~~~eLvgvid~~   70 (163)
                      +||+|+||+|++|+.++..+.. .+....+.++|+.
T Consensus         1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~   36 (312)
T PRK05086          1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIA   36 (312)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecC
Confidence            5899999999999999988754 3444444566743

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=95.78  E-value=0.037  Score=49.22  Aligned_cols=86  Identities=21%  Similarity=0.266  Sum_probs=57.8

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCC--cceeCCHHHHHhcccccCCccEEE
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE--IPVMSDLTMVLGSISQSKARAVVI  111 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~g--i~v~~~l~ell~~~~~~~~~DVVI  111 (163)
                      +..||.|+|| |.||..+++.+. ..++.-+-++.++.  .++.+++.   ..+  +.-++++.+.+.      ++||||
T Consensus       177 ~~~~vlvIGA-Gem~~lva~~L~-~~g~~~i~IaNRT~--erA~~La~---~~~~~~~~l~el~~~l~------~~DvVi  243 (414)
T COG0373         177 KDKKVLVIGA-GEMGELVAKHLA-EKGVKKITIANRTL--ERAEELAK---KLGAEAVALEELLEALA------EADVVI  243 (414)
T ss_pred             ccCeEEEEcc-cHHHHHHHHHHH-hCCCCEEEEEcCCH--HHHHHHHH---HhCCeeecHHHHHHhhh------hCCEEE
Confidence            3467999995 999999999987 45666666777654  23334432   223  223455556664      899999


Q ss_pred             Ecc-Cchh--HHHHHHHHHHcCCc
Q 031216          112 DFT-DAST--VYDNVKQATAFGMR  132 (163)
Q Consensus       112 DfT-~p~~--~~~~~~~al~~G~~  132 (163)
                      -.| .|+.  ..+.+..+++..++
T Consensus       244 ssTsa~~~ii~~~~ve~a~~~r~~  267 (414)
T COG0373         244 SSTSAPHPIITREMVERALKIRKR  267 (414)
T ss_pred             EecCCCccccCHHHHHHHHhcccC
Confidence            776 3433  35778888888777

>PRK05993 short chain dehydrogenase; Provisional

Probab=95.78  E-value=0.18  Score=41.11  Aligned_cols=31  Identities=23%  Similarity=0.330  Sum_probs=26.3

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvi   67 (163)
                      .+|.|+|++|.+|+.+++.+.+ .|.+++.+.
T Consensus         5 k~vlItGasggiG~~la~~l~~-~G~~Vi~~~   35 (277)
T PRK05993          5 RSILITGCSSGIGAYCARALQS-DGWRVFATC   35 (277)
T ss_pred             CEEEEeCCCcHHHHHHHHHHHH-CCCEEEEEE
Confidence            4799999999999999999874 688887654

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=95.78  E-value=0.26  Score=42.21  Aligned_cols=34  Identities=15%  Similarity=0.249  Sum_probs=26.4

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCc-EEEEEEecC
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSH   70 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~-eLvgvid~~   70 (163)
                      ++.||+|+|+ |.||..++..+. ..++ + +.++|..
T Consensus         5 ~~~KI~IIGa-G~vG~~ia~~la-~~gl~~-i~LvDi~   39 (321)
T PTZ00082          5 KRRKISLIGS-GNIGGVMAYLIV-LKNLGD-VVLFDIV   39 (321)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHH-hCCCCe-EEEEeCC
Confidence            4468999995 999999988766 4565 7 6688953

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=95.75  E-value=0.075  Score=44.76  Aligned_cols=32  Identities=38%  Similarity=0.399  Sum_probs=26.0

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~   70 (163)
                      +||+|+| .|.||..++..+.+ .|.+++ ++|+.
T Consensus         3 ~~V~VIG-~G~mG~~iA~~la~-~G~~V~-v~d~~   34 (308)
T PRK06129          3 GSVAIIG-AGLIGRAWAIVFAR-AGHEVR-LWDAD   34 (308)
T ss_pred             cEEEEEC-ccHHHHHHHHHHHH-CCCeeE-EEeCC
Confidence            5899999 69999999999875 588877 56753

>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.75  E-value=0.18  Score=44.41  Aligned_cols=87  Identities=17%  Similarity=0.175  Sum_probs=53.6

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCC-cEEEEEEecCCCCcchhhhccCCCCCCccee-CC-HHHHHhcccccCCccEE
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARG-MEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM-SD-LTMVLGSISQSKARAVV  110 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~-~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~-~~-l~ell~~~~~~~~~DVV  110 (163)
                      ++.||.|+| .|+.|...++.+....+ .++. +.|....-.....+   . . ++.++ .. -.+.+      .++|.|
T Consensus         6 ~~~~v~viG-~G~sG~s~~~~l~~~~~~~~v~-~~D~~~~~~~~~~l---~-~-g~~~~~g~~~~~~~------~~~d~v   72 (438)
T PRK04663          6 GIKNVVVVG-LGITGLSVVKHLRKYQPQLTVK-VIDTRETPPGQEQL---P-E-DVELHSGGWNLEWL------LEADLV   72 (438)
T ss_pred             CCceEEEEe-ccHHHHHHHHHHHhcCCCCeEE-EEeCCCCchhHHHh---h-c-CCEEEeCCCChHHh------ccCCEE
Confidence            446899999 69999999999987765 7777 47743211111122   1 2 66653 21 12233      278987


Q ss_pred             EEccC--chhHHHHHHHHHHcCCcEEE
Q 031216          111 IDFTD--ASTVYDNVKQATAFGMRSVV  135 (163)
Q Consensus       111 IDfT~--p~~~~~~~~~al~~G~~vVi  135 (163)
                      | .|+  |.. .+.+..|.++|++++.
T Consensus        73 V-~SpgI~~~-~p~~~~a~~~gi~i~~   97 (438)
T PRK04663         73 V-TNPGIALA-TPEIQQVLAAGIPVVG   97 (438)
T ss_pred             E-ECCCCCCC-CHHHHHHHHCCCcEEE
Confidence            7 552  332 4567777888888764

>PRK14851 hypothetical protein; Provisional

Probab=95.72  E-value=0.084  Score=49.73  Aligned_cols=97  Identities=21%  Similarity=0.263  Sum_probs=59.0

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC---------C-------CCcc----hh-hhccCCCCCCccee-
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH---------S-------VGED----IG-MVCDMEQPLEIPVM-   91 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~---------~-------~g~~----~~-~l~g~~~~~gi~v~-   91 (163)
                      +..||+|+| .|..|..++..+. ..|+.=.-++|.+         .       .|+.    +. .+..+.....|..+ 
T Consensus        42 ~~~~VlIvG-~GGlGs~va~~La-r~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~inP~~~I~~~~  119 (679)
T PRK14851         42 AEAKVAIPG-MGGVGGVHLITMV-RTGIGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSINPFLEITPFP  119 (679)
T ss_pred             hcCeEEEEC-cCHHHHHHHHHHH-HhCCCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHhCCCCeEEEEe
Confidence            357899999 5999999999987 4566555577732         0       1111    00 00111111223222 


Q ss_pred             -----CCHHHHHhcccccCCccEEEEccCchh--H-HHHHHHHHHcCCcEEEeCC
Q 031216           92 -----SDLTMVLGSISQSKARAVVIDFTDAST--V-YDNVKQATAFGMRSVVYVP  138 (163)
Q Consensus        92 -----~~l~ell~~~~~~~~~DVVIDfT~p~~--~-~~~~~~al~~G~~vVigtt  138 (163)
                           +++++++.      ++|+|||++....  . ......|.+.|+++|.+.+
T Consensus       120 ~~i~~~n~~~~l~------~~DvVid~~D~~~~~~r~~l~~~c~~~~iP~i~~g~  168 (679)
T PRK14851        120 AGINADNMDAFLD------GVDVVLDGLDFFQFEIRRTLFNMAREKGIPVITAGP  168 (679)
T ss_pred             cCCChHHHHHHHh------CCCEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeec
Confidence                 24556664      8999999986422  2 3455678999999998763

>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]

Probab=95.71  E-value=0.14  Score=42.80  Aligned_cols=93  Identities=19%  Similarity=0.243  Sum_probs=59.3

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhhc----------------cCCCCCCcc-----
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMVC----------------DMEQPLEIP-----   89 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~-----~~g~~~~~l~----------------g~~~~~gi~-----   89 (163)
                      -+|.|+| .|+.|.-.+++|. ..|+.=.-++|-+     +..+.+-.+.                .+.-...+.     
T Consensus        31 ~~V~VvG-iGGVGSw~veALa-RsGig~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv~vm~eri~~InP~c~V~~~~~f  108 (263)
T COG1179          31 AHVCVVG-IGGVGSWAVEALA-RSGIGRITLIDMDDVCVTNTNRQIHALLGDIGKPKVEVMKERIKQINPECEVTAINDF  108 (263)
T ss_pred             CcEEEEe-cCchhHHHHHHHH-HcCCCeEEEEecccccccccchhhHhhhhhcccHHHHHHHHHHHhhCCCceEeehHhh
Confidence            4799999 5999999999987 5677666677721     1111111110                000011111     


Q ss_pred             ee-CCHHHHHhcccccCCccEEEEccCch-hHHHHHHHHHHcCCcEEE
Q 031216           90 VM-SDLTMVLGSISQSKARAVVIDFTDAS-TVYDNVKQATAFGMRSVV  135 (163)
Q Consensus        90 v~-~~l~ell~~~~~~~~~DVVIDfT~p~-~~~~~~~~al~~G~~vVi  135 (163)
                      ++ +++++++.     .++|-|||+...= .-.+.+.+|.++++++|.
T Consensus       109 ~t~en~~~~~~-----~~~DyvIDaiD~v~~Kv~Li~~c~~~ki~vIs  151 (263)
T COG1179         109 ITEENLEDLLS-----KGFDYVIDAIDSVRAKVALIAYCRRNKIPVIS  151 (263)
T ss_pred             hCHhHHHHHhc-----CCCCEEEEchhhhHHHHHHHHHHHHcCCCEEe
Confidence            22 56677776     5899999998443 346888999999999884

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=95.67  E-value=0.15  Score=37.83  Aligned_cols=31  Identities=19%  Similarity=0.400  Sum_probs=25.5

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (163)
Q Consensus        37 rV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~   69 (163)
                      ||.|+| +|.+|..+++.+. ..++.=..++|.
T Consensus         1 ~VliiG-~GglGs~ia~~L~-~~Gv~~i~ivD~   31 (143)
T cd01483           1 RVLLVG-LGGLGSEIALNLA-RSGVGKITLIDF   31 (143)
T ss_pred             CEEEEC-CCHHHHHHHHHHH-HCCCCEEEEEcC
Confidence            689999 5999999999997 567765567884

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PRK14852 hypothetical protein; Provisional

Probab=95.67  E-value=0.077  Score=51.79  Aligned_cols=97  Identities=15%  Similarity=0.230  Sum_probs=59.9

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC---------C-------CCcc----hh-hhccCCCCCCccee-
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH---------S-------VGED----IG-MVCDMEQPLEIPVM-   91 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~---------~-------~g~~----~~-~l~g~~~~~gi~v~-   91 (163)
                      +..||+|+| .|+.|..++..+. ..|+.=.-++|.+         .       .|+.    +. .+..+.....|.++ 
T Consensus       331 ~~srVlVvG-lGGlGs~ia~~LA-raGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~INP~v~I~~~~  408 (989)
T PRK14852        331 LRSRVAIAG-LGGVGGIHLMTLA-RTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSVNPFLDIRSFP  408 (989)
T ss_pred             hcCcEEEEC-CcHHHHHHHHHHH-HcCCCeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHHCCCCeEEEEe
Confidence            357899999 5999999999987 4567666677732         0       1111    00 01111111223323 


Q ss_pred             -----CCHHHHHhcccccCCccEEEEccCc---hhHHHHHHHHHHcCCcEEEeCC
Q 031216           92 -----SDLTMVLGSISQSKARAVVIDFTDA---STVYDNVKQATAFGMRSVVYVP  138 (163)
Q Consensus        92 -----~~l~ell~~~~~~~~~DVVIDfT~p---~~~~~~~~~al~~G~~vVigtt  138 (163)
                           ++.++++.      ++|+|||++..   +.-......|.+.|+|+|.+..
T Consensus       409 ~~I~~en~~~fl~------~~DiVVDa~D~~~~~~rr~l~~~c~~~~IP~I~ag~  457 (989)
T PRK14852        409 EGVAAETIDAFLK------DVDLLVDGIDFFALDIRRRLFNRALELGIPVITAGP  457 (989)
T ss_pred             cCCCHHHHHHHhh------CCCEEEECCCCccHHHHHHHHHHHHHcCCCEEEeec
Confidence                 34566664      89999998753   2224555678999999997766

>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases

Probab=95.64  E-value=0.067  Score=45.88  Aligned_cols=73  Identities=16%  Similarity=0.155  Sum_probs=44.4

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcC------CcEEEEEEecCC-----CCcchhhhccC--CCCCCcceeCCHHHHHhc
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKAR------GMEVAGAIDSHS-----VGEDIGMVCDM--EQPLEIPVMSDLTMVLGS  100 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~------~~eLvgvid~~~-----~g~~~~~l~g~--~~~~gi~v~~~l~ell~~  100 (163)
                      +|+||+|+||+|++|+.++..+...+      +.+|+. +|...     .|. ..++...  ....++.+..++.+.+. 
T Consensus         1 ~~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L-~D~~~~~~~~~g~-~~Dl~d~~~~~~~~~~~~~~~~~~l~-   77 (325)
T cd01336           1 EPIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHL-LDIPPALKALEGV-VMELQDCAFPLLKSVVATTDPEEAFK-   77 (325)
T ss_pred             CCeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEE-EEcCCccccccce-eeehhhccccccCCceecCCHHHHhC-
Confidence            47899999988999999999887643      236764 56421     121 1122110  00113444567767674 


Q ss_pred             ccccCCccEEEEcc
Q 031216          101 ISQSKARAVVIDFT  114 (163)
Q Consensus       101 ~~~~~~~DVVIDfT  114 (163)
                           .+|+||...
T Consensus        78 -----~aDiVI~tA   86 (325)
T cd01336          78 -----DVDVAILVG   86 (325)
T ss_pred             -----CCCEEEEeC
Confidence                 899988643

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]

Probab=95.63  E-value=0.061  Score=46.64  Aligned_cols=99  Identities=16%  Similarity=0.118  Sum_probs=54.9

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCC--HHHHHhcccccCCccEEEE
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSD--LTMVLGSISQSKARAVVID  112 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~--l~ell~~~~~~~~~DVVID  112 (163)
                      ..+|.|+|++|..|...++.+.. -++..+..+.++. ..+..+-+|.   ..+.=|++  +.|.+.... ..++|+|+|
T Consensus       158 g~~vLv~ggsggVG~~aiQlAk~-~~~~~v~t~~s~e-~~~l~k~lGA---d~vvdy~~~~~~e~~kk~~-~~~~DvVlD  231 (347)
T KOG1198|consen  158 GKSVLVLGGSGGVGTAAIQLAKH-AGAIKVVTACSKE-KLELVKKLGA---DEVVDYKDENVVELIKKYT-GKGVDVVLD  231 (347)
T ss_pred             CCeEEEEeCCcHHHHHHHHHHHh-cCCcEEEEEcccc-hHHHHHHcCC---cEeecCCCHHHHHHHHhhc-CCCccEEEE
Confidence            46899999999999999988764 4544444444322 2333333331   12222444  333332100 347999999


Q ss_pred             ccCchhHHHHHHHHHHcCCcEEEeCCC
Q 031216          113 FTDASTVYDNVKQATAFGMRSVVYVPH  139 (163)
Q Consensus       113 fT~p~~~~~~~~~al~~G~~vVigttg  139 (163)
                      |................|...++++.+
T Consensus       232 ~vg~~~~~~~~~~l~~~g~~~~i~~~~  258 (347)
T KOG1198|consen  232 CVGGSTLTKSLSCLLKGGGGAYIGLVG  258 (347)
T ss_pred             CCCCCccccchhhhccCCceEEEEecc
Confidence            976544443344444555444555543

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=95.62  E-value=0.1  Score=47.36  Aligned_cols=33  Identities=18%  Similarity=0.237  Sum_probs=26.9

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~   70 (163)
                      ..||+|+| .|.||+.++..+. ..|++++ +.|++
T Consensus         7 i~~V~VIG-aG~MG~gIA~~la-~aG~~V~-l~D~~   39 (507)
T PRK08268          7 IATVAVIG-AGAMGAGIAQVAA-QAGHTVL-LYDAR   39 (507)
T ss_pred             CCEEEEEC-CCHHHHHHHHHHH-hCCCeEE-EEeCC
Confidence            35799999 5999999999887 5699987 57753

>PLN02260 probable rhamnose biosynthetic enzyme

Probab=95.61  E-value=0.08  Score=49.03  Aligned_cols=82  Identities=15%  Similarity=0.123  Sum_probs=50.9

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEc
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDf  113 (163)
                      ..+||.|+|++|.+|+.+++.+.. .+.++.....+         +..         ...+...+..    .++|+||.+
T Consensus       379 ~~mkiLVtGa~G~iG~~l~~~L~~-~g~~v~~~~~~---------l~d---------~~~v~~~i~~----~~pd~Vih~  435 (668)
T PLN02260        379 PSLKFLIYGRTGWIGGLLGKLCEK-QGIAYEYGKGR---------LED---------RSSLLADIRN----VKPTHVFNA  435 (668)
T ss_pred             CCceEEEECCCchHHHHHHHHHHh-CCCeEEeeccc---------ccc---------HHHHHHHHHh----hCCCEEEEC
Confidence            358999999999999999999874 46776311110         100         0123344442    589999987


Q ss_pred             cC----c---------h--------hHHHHHHHHHHcCCcEEEeCC
Q 031216          114 TD----A---------S--------TVYDNVKQATAFGMRSVVYVP  138 (163)
Q Consensus       114 T~----p---------~--------~~~~~~~~al~~G~~vVigtt  138 (163)
                      ..    |         .        .....+..|.+.|++.|+-.|
T Consensus       436 Aa~~~~~~~~~~~~~~~~~~~~N~~gt~~l~~a~~~~g~~~v~~Ss  481 (668)
T PLN02260        436 AGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRENGLLMMNFAT  481 (668)
T ss_pred             CcccCCCCCChHHhCHHHHHHHHhHHHHHHHHHHHHcCCeEEEEcc
Confidence            52    1         1        123456778888988775433

>PRK06407 ornithine cyclodeaminase; Provisional

Probab=95.59  E-value=0.038  Score=46.89  Aligned_cols=89  Identities=7%  Similarity=0.009  Sum_probs=59.1

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhcc-CCCCCC--cceeCCHHHHHhcccccCCccEEE
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCD-MEQPLE--IPVMSDLTMVLGSISQSKARAVVI  111 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g-~~~~~g--i~v~~~l~ell~~~~~~~~~DVVI  111 (163)
                      .-+++|+| +|..|+.+++.+.....++=+-+.+++.  .+...+.. +....+  +.+.++++++..      ..|+|+
T Consensus       117 a~~l~iiG-aG~QA~~~~~a~~~v~~i~~v~v~~r~~--~~a~~f~~~~~~~~~~~v~~~~~~~eav~------~aDIV~  187 (301)
T PRK06407        117 VENFTIIG-SGFQAETQLEGMASVYNPKRIRVYSRNF--DHARAFAERFSKEFGVDIRPVDNAEAALR------DADTIT  187 (301)
T ss_pred             CcEEEEEC-CcHHHHHHHHHHHhcCCCCEEEEECCCH--HHHHHHHHHHHHhcCCcEEEeCCHHHHHh------cCCEEE
Confidence            46899999 6999999999999888888888888653  12222211 001123  455789999985      999999


Q ss_pred             EccCchhHHHHH-HHHHHcCCcEE
Q 031216          112 DFTDASTVYDNV-KQATAFGMRSV  134 (163)
Q Consensus       112 DfT~p~~~~~~~-~~al~~G~~vV  134 (163)
                      =+| +... +.+ ...++.|.||.
T Consensus       188 taT-~s~~-P~~~~~~l~pg~hV~  209 (301)
T PRK06407        188 SIT-NSDT-PIFNRKYLGDEYHVN  209 (301)
T ss_pred             Eec-CCCC-cEecHHHcCCCceEE
Confidence            544 3322 222 23456788876

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=95.56  E-value=0.049  Score=46.06  Aligned_cols=86  Identities=13%  Similarity=0.163  Sum_probs=49.5

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcce--eCCHHHHHhcccccCCccEEE
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV--MSDLTMVLGSISQSKARAVVI  111 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v--~~~l~ell~~~~~~~~~DVVI  111 (163)
                      ...||+|+| .|++|+.+++.+.. -+.++.. +|++..  +.....    ..+...  ++++.+.+.      ++|+||
T Consensus       151 ~g~kvlViG-~G~iG~~~a~~L~~-~Ga~V~v-~~r~~~--~~~~~~----~~G~~~~~~~~l~~~l~------~aDiVI  215 (296)
T PRK08306        151 HGSNVLVLG-FGRTGMTLARTLKA-LGANVTV-GARKSA--HLARIT----EMGLSPFHLSELAEEVG------KIDIIF  215 (296)
T ss_pred             CCCEEEEEC-CcHHHHHHHHHHHH-CCCEEEE-EECCHH--HHHHHH----HcCCeeecHHHHHHHhC------CCCEEE
Confidence            457999999 59999999999875 4677664 565421  111111    122221  245666663      899999


Q ss_pred             EccCchhHHHHHHHHHHcCCcEE
Q 031216          112 DFTDASTVYDNVKQATAFGMRSV  134 (163)
Q Consensus       112 DfT~p~~~~~~~~~al~~G~~vV  134 (163)
                      +.+++....+.....++.|--+|
T Consensus       216 ~t~p~~~i~~~~l~~~~~g~vII  238 (296)
T PRK08306        216 NTIPALVLTKEVLSKMPPEALII  238 (296)
T ss_pred             ECCChhhhhHHHHHcCCCCcEEE
Confidence            76543333333333444554333

>PRK05693 short chain dehydrogenase; Provisional

Probab=95.52  E-value=0.15  Score=41.35  Aligned_cols=32  Identities=38%  Similarity=0.386  Sum_probs=26.7

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvi   67 (163)
                      |.++.|+|++|.+|+.+++.+. ..+.++++..
T Consensus         1 mk~vlItGasggiG~~la~~l~-~~G~~V~~~~   32 (274)
T PRK05693          1 MPVVLITGCSSGIGRALADAFK-AAGYEVWATA   32 (274)
T ss_pred             CCEEEEecCCChHHHHHHHHHH-HCCCEEEEEe
Confidence            4579999999999999999987 4588888653

>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]

Probab=95.51  E-value=0.2  Score=43.48  Aligned_cols=109  Identities=16%  Similarity=0.064  Sum_probs=59.7

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEccC
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT~  115 (163)
                      .||+++| .|++|+.+++++..- +.++..--..+...+...+.       +.. +.|+++++.      +.|+|+.+..
T Consensus       163 K~vgilG-~G~IG~~ia~rL~~F-g~~i~y~~r~~~~~~~~~~~-------~~~-~~d~~~~~~------~sD~ivv~~p  226 (336)
T KOG0069|consen  163 KTVGILG-LGRIGKAIAKRLKPF-GCVILYHSRTQLPPEEAYEY-------YAE-FVDIEELLA------NSDVIVVNCP  226 (336)
T ss_pred             CEEEEec-CcHHHHHHHHhhhhc-cceeeeecccCCchhhHHHh-------ccc-ccCHHHHHh------hCCEEEEecC
Confidence            6899999 699999999999863 45554322222111111111       111 458899885      8999886652


Q ss_pred             --chhH-HHHHHHHHHcCCcEEEeCCCC-CHHHHHHHHHHhhhcCeEEc
Q 031216          116 --ASTV-YDNVKQATAFGMRSVVYVPHI-QLETVSALSAFCDKASMVST  160 (163)
Q Consensus       116 --p~~~-~~~~~~al~~G~~vVigttg~-~~e~~~~L~~~A~~~~Vv~t  160 (163)
                        ++.. .-+-+.....+..+|+=.++. .--+.+.+.++.++-.+..+
T Consensus       227 Lt~~T~~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~sG~i~~a  275 (336)
T KOG0069|consen  227 LTKETRHLINKKFIEKMKDGAVLVNTARGAIIDEEALVEALKSGKIAGA  275 (336)
T ss_pred             CCHHHHHHhhHHHHHhcCCCeEEEeccccccccHHHHHHHHhcCCcccc
Confidence              3322 233344455555555444532 01122446666555444433

>PRK14031 glutamate dehydrogenase; Provisional

Probab=95.50  E-value=0.16  Score=45.66  Aligned_cols=114  Identities=14%  Similarity=0.135  Sum_probs=71.2

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhhc----------c----CCCCCCcceeCCHH
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMVC----------D----MEQPLEIPVMSDLT   95 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~-----~~g~~~~~l~----------g----~~~~~gi~v~~~l~   95 (163)
                      ..||+|.| .|++|...++.+. ..|.+++++.|+.     ..|-|..++.          +    .....+.. +.+.+
T Consensus       228 g~rVaVQG-fGNVG~~aA~~L~-e~GAkVVaVSD~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~ga~-~i~~d  304 (444)
T PRK14031        228 GKVCLVSG-SGNVAQYTAEKVL-ELGGKVVTMSDSDGYIYDPDGIDREKLDYIMELKNLYRGRIREYAEKYGCK-YVEGA  304 (444)
T ss_pred             CCEEEEEC-CCHHHHHHHHHHH-HCCCEEEEEECCCCeEECCCCCCHHHHHHHHHHHhhcCCchhhhHhhcCCE-EcCCc
Confidence            47999999 6999999999987 5799999999942     3455543321          0    00011222 22556


Q ss_pred             HHHhcccccCCccEEEEccCchhH-HHHHHHHHHcCCcEEEeCC-C-CCHHHHHHHHHHhhhcCeEEc
Q 031216           96 MVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP-H-IQLETVSALSAFCDKASMVST  160 (163)
Q Consensus        96 ell~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigtt-g-~~~e~~~~L~~~A~~~~Vv~t  160 (163)
                      +++.     .++|+++=+...... .+++......|+.+|++-- + .+++..+.|    .+.+|++.
T Consensus       305 ~~~~-----~~cDIliPaAl~n~I~~~na~~l~a~g~~~V~EgAN~P~t~eA~~~L----~~rgI~~~  363 (444)
T PRK14031        305 RPWG-----EKGDIALPSATQNELNGDDARQLVANGVIAVSEGANMPSTPEAIKVF----QDAKILYA  363 (444)
T ss_pred             cccc-----CCCcEEeecccccccCHHHHHHHHhcCCeEEECCCCCCCCHHHHHHH----HHCCcEEe
Confidence            6665     589998855544433 5777777778888888665 2 344443333    33455553

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=95.50  E-value=0.049  Score=50.34  Aligned_cols=32  Identities=22%  Similarity=0.359  Sum_probs=27.3

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid   68 (163)
                      -.|.|.|++|++|+.+++.+.+ .|.+++++..
T Consensus        81 KvVLVTGATGgIG~aLAr~LLk-~G~~Vval~R  112 (576)
T PLN03209         81 DLAFVAGATGKVGSRTVRELLK-LGFRVRAGVR  112 (576)
T ss_pred             CEEEEECCCCHHHHHHHHHHHH-CCCeEEEEeC
Confidence            4599999999999999999874 5889887655

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.49  E-value=0.18  Score=44.12  Aligned_cols=87  Identities=20%  Similarity=0.147  Sum_probs=52.3

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC-Ccch-hhhccCCCCCCccee--CCHHHHHhcccccCCccEEE
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-GEDI-GMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAVVI  111 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~-g~~~-~~l~g~~~~~gi~v~--~~l~ell~~~~~~~~~DVVI  111 (163)
                      .+|.|+|+ |++|...++.+. ..|.++++ .|.... .... ..+.    ..++.++  .+..+++.     ..+|+||
T Consensus         6 k~v~v~G~-g~~G~s~a~~l~-~~G~~V~~-~d~~~~~~~~~~~~l~----~~g~~~~~~~~~~~~~~-----~~~d~vV   73 (447)
T PRK02472          6 KKVLVLGL-AKSGYAAAKLLH-KLGANVTV-NDGKPFSENPEAQELL----EEGIKVICGSHPLELLD-----EDFDLMV   73 (447)
T ss_pred             CEEEEEee-CHHHHHHHHHHH-HCCCEEEE-EcCCCccchhHHHHHH----hcCCEEEeCCCCHHHhc-----CcCCEEE
Confidence            47999995 889999988876 67888775 464321 1111 2221    3355544  33444443     2489887


Q ss_pred             Ecc-CchhHHHHHHHHHHcCCcEEE
Q 031216          112 DFT-DASTVYDNVKQATAFGMRSVV  135 (163)
Q Consensus       112 DfT-~p~~~~~~~~~al~~G~~vVi  135 (163)
                      --. .|.. .+.+..|.+.|++++.
T Consensus        74 ~s~gi~~~-~~~~~~a~~~~i~v~~   97 (447)
T PRK02472         74 KNPGIPYT-NPMVEKALEKGIPIIT   97 (447)
T ss_pred             ECCCCCCC-CHHHHHHHHCCCcEEe
Confidence            432 2332 3567777888888764

>PTZ00117 malate dehydrogenase; Provisional

Probab=95.48  E-value=0.45  Score=40.55  Aligned_cols=35  Identities=17%  Similarity=0.186  Sum_probs=26.6

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~   70 (163)
                      +..||+|+|+ |.||..++..+....-.+ +.++|..
T Consensus         4 ~~~KI~IIGa-G~vG~~ia~~l~~~~~~~-l~L~Di~   38 (319)
T PTZ00117          4 KRKKISMIGA-GQIGSTVALLILQKNLGD-VVLYDVI   38 (319)
T ss_pred             CCcEEEEECC-CHHHHHHHHHHHHCCCCe-EEEEECC
Confidence            4579999996 999999888876543256 6688853

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=95.45  E-value=0.17  Score=42.46  Aligned_cols=94  Identities=16%  Similarity=0.242  Sum_probs=57.5

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-----CCCcch-------h---------hhccCCCCCCccee--
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDI-------G---------MVCDMEQPLEIPVM--   91 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~-----~~g~~~-------~---------~l~g~~~~~gi~v~--   91 (163)
                      ..+|+|+| .|.+|..+++.+. ..|+.=+-++|.+     ..++..       +         .+..+.....+..+  
T Consensus        30 ~s~VlVvG-~GGVGs~vae~La-r~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~INP~~~V~~i~~  107 (268)
T PRK15116         30 DAHICVVG-IGGVGSWAAEALA-RTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECRVTVVDD  107 (268)
T ss_pred             CCCEEEEC-cCHHHHHHHHHHH-HcCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhHCCCcEEEEEec
Confidence            46899999 5999999999997 4565555577732     111110       0         00011001112111  


Q ss_pred             ----CCHHHHHhcccccCCccEEEEccCc-hhHHHHHHHHHHcCCcEEE
Q 031216           92 ----SDLTMVLGSISQSKARAVVIDFTDA-STVYDNVKQATAFGMRSVV  135 (163)
Q Consensus        92 ----~~l~ell~~~~~~~~~DVVIDfT~p-~~~~~~~~~al~~G~~vVi  135 (163)
                          ++.++++.     .++|+|||+... ..-......|.++++++|.
T Consensus       108 ~i~~e~~~~ll~-----~~~D~VIdaiD~~~~k~~L~~~c~~~~ip~I~  151 (268)
T PRK15116        108 FITPDNVAEYMS-----AGFSYVIDAIDSVRPKAALIAYCRRNKIPLVT  151 (268)
T ss_pred             ccChhhHHHHhc-----CCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEE
Confidence                24455554     479999998744 5556778899999999984

>PRK06932 glycerate dehydrogenase; Provisional

Probab=95.44  E-value=0.13  Score=43.76  Aligned_cols=59  Identities=15%  Similarity=0.083  Sum_probs=42.0

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT  114 (163)
                      -.+|||+| +|++|+.+++.+. .=|+++.+ +|+... .   .       ... -+.++++++.      ..|+|+...
T Consensus       147 gktvgIiG-~G~IG~~va~~l~-~fg~~V~~-~~~~~~-~---~-------~~~-~~~~l~ell~------~sDiv~l~~  205 (314)
T PRK06932        147 GSTLGVFG-KGCLGTEVGRLAQ-ALGMKVLY-AEHKGA-S---V-------CRE-GYTPFEEVLK------QADIVTLHC  205 (314)
T ss_pred             CCEEEEEC-CCHHHHHHHHHHh-cCCCEEEE-ECCCcc-c---c-------ccc-ccCCHHHHHH------hCCEEEEcC
Confidence            47899999 7999999999886 45899876 454211 0   0       011 1468999996      899988655

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=95.43  E-value=0.063  Score=44.33  Aligned_cols=33  Identities=24%  Similarity=0.267  Sum_probs=28.0

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~   69 (163)
                      .+|.|.|++|.+|+.+++.+.+ .+.+++++..+
T Consensus         5 ~~ilVtGatGfIG~~l~~~L~~-~g~~V~~~~r~   37 (322)
T PLN02662          5 KVVCVTGASGYIASWLVKLLLQ-RGYTVKATVRD   37 (322)
T ss_pred             CEEEEECChHHHHHHHHHHHHH-CCCEEEEEEcC
Confidence            5899999999999999999985 58898876643

>PRK07877 hypothetical protein; Provisional

Probab=95.42  E-value=0.096  Score=49.68  Aligned_cols=96  Identities=17%  Similarity=0.257  Sum_probs=58.6

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCc-EEEEEEecC-----CC----------Ccc----hh-hhccCCCCCCccee-
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSH-----SV----------GED----IG-MVCDMEQPLEIPVM-   91 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~-eLvgvid~~-----~~----------g~~----~~-~l~g~~~~~gi~v~-   91 (163)
                      +..||+|+|+ | .|..++..+. ..|+ .=.-++|.+     +.          |+.    +. .+..+.....|..+ 
T Consensus       106 ~~~~V~IvG~-G-lGs~~a~~La-raGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~  182 (722)
T PRK07877        106 GRLRIGVVGL-S-VGHAIAHTLA-AEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVFT  182 (722)
T ss_pred             hcCCEEEEEe-c-HHHHHHHHHH-HccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEEe
Confidence            3478999996 8 9999998887 4564 333366732     11          110    00 00011011222222 


Q ss_pred             -----CCHHHHHhcccccCCccEEEEccCchhH-HHHHHHHHHcCCcEEEeCC
Q 031216           92 -----SDLTMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP  138 (163)
Q Consensus        92 -----~~l~ell~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigtt  138 (163)
                           +++++++.      ++|+|||++..-.. ...-..|.++|+|+|+|+.
T Consensus       183 ~~i~~~n~~~~l~------~~DlVvD~~D~~~~R~~ln~~a~~~~iP~i~~~~  229 (722)
T PRK07877        183 DGLTEDNVDAFLD------GLDVVVEECDSLDVKVLLREAARARRIPVLMATS  229 (722)
T ss_pred             ccCCHHHHHHHhc------CCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcC
Confidence                 35666664      89999999954444 4555889999999999885

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=95.40  E-value=0.06  Score=47.34  Aligned_cols=60  Identities=23%  Similarity=0.249  Sum_probs=42.6

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT  114 (163)
                      -.+|||+| .|+||+.+++.+. .=|+++.+ +|+...  +..       . . ..+.++++++.      +.|+|+..+
T Consensus       116 gktvGIIG-~G~IG~~vA~~l~-a~G~~V~~-~dp~~~--~~~-------~-~-~~~~~L~ell~------~sDiI~lh~  175 (378)
T PRK15438        116 DRTVGIVG-VGNVGRRLQARLE-ALGIKTLL-CDPPRA--DRG-------D-E-GDFRSLDELVQ------EADILTFHT  175 (378)
T ss_pred             CCEEEEEC-cCHHHHHHHHHHH-HCCCEEEE-ECCccc--ccc-------c-c-cccCCHHHHHh------hCCEEEEeC
Confidence            46899999 7999999999987 56899885 564321  000       0 1 12568999985      899988554

>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]

Probab=95.39  E-value=0.13  Score=45.32  Aligned_cols=112  Identities=11%  Similarity=0.046  Sum_probs=66.8

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEc
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDf  113 (163)
                      ..++|||+| .|.||+-+++.+.+ .|-.|. ..|+... .++.+      ++|..-|+++.++.+     ..+|+|+-+
T Consensus        51 ~tl~IaIIG-fGnmGqflAetli~-aGh~li-~hsRsdy-ssaa~------~yg~~~ft~lhdlce-----rhpDvvLlc  115 (480)
T KOG2380|consen   51 ATLVIAIIG-FGNMGQFLAETLID-AGHGLI-CHSRSDY-SSAAE------KYGSAKFTLLHDLCE-----RHPDVVLLC  115 (480)
T ss_pred             cceEEEEEe-cCcHHHHHHHHHHh-cCceeE-ecCcchh-HHHHH------HhcccccccHHHHHh-----cCCCEEEEE
Confidence            358999999 79999999999985 466554 2444321 22222      566777888888776     599999977


Q ss_pred             cCchhHHHHHHH---H-HHcCCcEEEeCCCCCHHHHH-HHHHHhhhcCeEEcC
Q 031216          114 TDASTVYDNVKQ---A-TAFGMRSVVYVPHIQLETVS-ALSAFCDKASMVSTG  161 (163)
Q Consensus       114 T~p~~~~~~~~~---a-l~~G~~vVigttg~~~e~~~-~L~~~A~~~~Vv~tg  161 (163)
                      |........+..   . ++.|. ++.+.+.--.-+.+ -++.+-+.-.|+-|.
T Consensus       116 tsilsiekilatypfqrlrrgt-lfvdvlSvKefek~lfekYLPkdfDIlctH  167 (480)
T KOG2380|consen  116 TSILSIEKILATYPFQRLRRGT-LFVDVLSVKEFEKELFEKYLPKDFDILCTH  167 (480)
T ss_pred             ehhhhHHHHHHhcCchhhccce-eEeeeeecchhHHHHHHHhCccccceEeec
Confidence            654444444432   2 44554 34555533222223 333344555555543

>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=95.39  E-value=0.3  Score=34.35  Aligned_cols=91  Identities=21%  Similarity=0.255  Sum_probs=54.7

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEccC-
Q 031216           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD-  115 (163)
Q Consensus        37 rV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT~-  115 (163)
                      +|+|+|+--.+-..+-+.+. .-|.++.-. .++ .|..         +    -...++..+      .++|+||-+|. 
T Consensus         1 ~vliVGG~~~~~~~~~~~~~-~~G~~~~~h-g~~-~~~~---------~----~~~~l~~~i------~~aD~VIv~t~~   58 (97)
T PF10087_consen    1 SVLIVGGREDRERRYKRILE-KYGGKLIHH-GRD-GGDE---------K----KASRLPSKI------KKADLVIVFTDY   58 (97)
T ss_pred             CEEEEcCCcccHHHHHHHHH-HcCCEEEEE-ecC-CCCc---------c----chhHHHHhc------CCCCEEEEEeCC
Confidence            58999932377777766665 578887765 321 1110         0    001244555      38899988873 


Q ss_pred             --chhHHHHHHHHHHcCCcEEEeC-CCCCHHHHHHHHH
Q 031216          116 --ASTVYDNVKQATAFGMRSVVYV-PHIQLETVSALSA  150 (163)
Q Consensus       116 --p~~~~~~~~~al~~G~~vVigt-tg~~~e~~~~L~~  150 (163)
                        .......-..|.+.++|++.-. ++++ .-.+.|.+
T Consensus        59 vsH~~~~~vk~~akk~~ip~~~~~~~~~~-~l~~~l~~   95 (97)
T PF10087_consen   59 VSHNAMWKVKKAAKKYGIPIIYSRSRGVS-SLERALER   95 (97)
T ss_pred             cChHHHHHHHHHHHHcCCcEEEECCCCHH-HHHHHHHh
Confidence              3334455578889999999866 4664 23344444

>PTZ00325 malate dehydrogenase; Provisional

Probab=95.38  E-value=0.25  Score=42.52  Aligned_cols=38  Identities=18%  Similarity=0.207  Sum_probs=28.6

Q ss_pred             CCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216           32 PQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (163)
Q Consensus        32 ~~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~   69 (163)
                      ..+|.||+|+|+.|++|+.++..+....-..-+.++|.
T Consensus         5 ~~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di   42 (321)
T PTZ00325          5 ALKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDI   42 (321)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEec
Confidence            35788999999779999999988875544433446775

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=95.36  E-value=0.11  Score=47.46  Aligned_cols=85  Identities=18%  Similarity=0.168  Sum_probs=52.3

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEc
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDf  113 (163)
                      .-.+|+|+| .|+||+.+++.+. .-|+++.+ +|+... .+...      ..++... ++++++.      ..|+|+..
T Consensus       139 ~gktvgIiG-~G~IG~~vA~~l~-~fG~~V~~-~d~~~~-~~~~~------~~g~~~~-~l~ell~------~aDiV~l~  201 (526)
T PRK13581        139 YGKTLGIIG-LGRIGSEVAKRAK-AFGMKVIA-YDPYIS-PERAA------QLGVELV-SLDELLA------RADFITLH  201 (526)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHH-hCCCEEEE-ECCCCC-hhHHH------hcCCEEE-cHHHHHh------hCCEEEEc
Confidence            347899999 7999999999987 56888875 564221 11111      2344434 8999985      89998855


Q ss_pred             cCch-hHH----HHHHHHHHcCCcEEE
Q 031216          114 TDAS-TVY----DNVKQATAFGMRSVV  135 (163)
Q Consensus       114 T~p~-~~~----~~~~~al~~G~~vVi  135 (163)
                      .+.+ ...    .-....++.|.-+|-
T Consensus       202 lP~t~~t~~li~~~~l~~mk~ga~lIN  228 (526)
T PRK13581        202 TPLTPETRGLIGAEELAKMKPGVRIIN  228 (526)
T ss_pred             cCCChHhhcCcCHHHHhcCCCCeEEEE
Confidence            4221 111    233444556655544

>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional

Probab=95.36  E-value=0.043  Score=47.33  Aligned_cols=88  Identities=11%  Similarity=0.083  Sum_probs=54.0

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEE---EEEec-CCCCcchhhhccCCCCCCcceeCCHHH-HHhcccccCCccE
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVA---GAIDS-HSVGEDIGMVCDMEQPLEIPVMSDLTM-VLGSISQSKARAV  109 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLv---gvid~-~~~g~~~~~l~g~~~~~gi~v~~~l~e-ll~~~~~~~~~DV  109 (163)
                      .++|+| ||+|..|+.+++.+. ..++.+-   -+... ...|+.    .... ...+.+- ++++ .+      .++|+
T Consensus         3 ~~~iAi-GATg~VG~~~l~~Le-er~fpv~~l~l~~s~~~s~gk~----i~f~-g~~~~V~-~l~~~~f------~~vDi   68 (322)
T PRK06901          3 TLNIAI-AAEFELSEKLLEALE-QSDLEIEQISIVEIEPFGEEQG----IRFN-NKAVEQI-APEEVEW------ADFNY   68 (322)
T ss_pred             cceEEE-ecCcHHHHHHHHHHH-hcCCchhheeecccccccCCCE----EEEC-CEEEEEE-ECCccCc------ccCCE
Confidence            368999 999999999999876 4455432   11112 223322    1111 1123332 3333 23      38999


Q ss_pred             EEEccCchhHHHHHHHHHHcCCcEEEeC
Q 031216          110 VIDFTDASTVYDNVKQATAFGMRSVVYV  137 (163)
Q Consensus       110 VIDfT~p~~~~~~~~~al~~G~~vVigt  137 (163)
                      ++ |+..+...+++..+.++|..||--+
T Consensus        69 a~-fag~~~s~~~ap~a~~aG~~VIDnS   95 (322)
T PRK06901         69 VF-FAGKMAQAEHLAQAAEAGCIVIDLY   95 (322)
T ss_pred             EE-EcCHHHHHHHHHHHHHCCCEEEECC
Confidence            88 6555666889999999999887533

>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2

Probab=95.35  E-value=0.17  Score=43.45  Aligned_cols=92  Identities=16%  Similarity=0.201  Sum_probs=55.8

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC----------------Ccc----hhhhc-cCCCCCCccee-CCH
Q 031216           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV----------------GED----IGMVC-DMEQPLEIPVM-SDL   94 (163)
Q Consensus        37 rV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~----------------g~~----~~~l~-g~~~~~gi~v~-~~l   94 (163)
                      ||.|+| .|.+|.++++.+. ..|+.=.-++|.+..                |+.    +.+.+ .+.....+..+ .++
T Consensus         1 kVlIVG-aGGlG~EiaKnLa-l~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~~i   78 (312)
T cd01489           1 KVLVVG-AGGIGCELLKNLV-LTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHANI   78 (312)
T ss_pred             CEEEEC-CCHHHHHHHHHHH-HhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEeccC
Confidence            699999 5999999999997 678888888994311                111    00000 00001112111 111


Q ss_pred             ------HHHHhcccccCCccEEEEccCchhHH-HHHHHHHHcCCcEEEe
Q 031216           95 ------TMVLGSISQSKARAVVIDFTDASTVY-DNVKQATAFGMRSVVY  136 (163)
Q Consensus        95 ------~ell~~~~~~~~~DVVIDfT~p~~~~-~~~~~al~~G~~vVig  136 (163)
                            ++.+      ..+|+||++..+.... ..-..|.++++++|-+
T Consensus        79 ~~~~~~~~f~------~~~DvVv~a~Dn~~ar~~in~~c~~~~ip~I~~  121 (312)
T cd01489          79 KDPDFNVEFF------KQFDLVFNALDNLAARRHVNKMCLAADVPLIES  121 (312)
T ss_pred             CCccchHHHH------hcCCEEEECCCCHHHHHHHHHHHHHCCCCEEEE
Confidence                  2444      3899999887554454 4557889999999863

UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.34  E-value=0.22  Score=44.50  Aligned_cols=91  Identities=14%  Similarity=0.190  Sum_probs=55.9

Q ss_pred             CCCCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeC--CHHHHHhcccccCC
Q 031216           29 TNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS--DLTMVLGSISQSKA  106 (163)
Q Consensus        29 ~~~~~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~--~l~ell~~~~~~~~  106 (163)
                      .-|.-++.||.|+| .|+.|+.+++.+. ..+.++. +.|+...  +..+++   ...|+.++.  ...+-+      .+
T Consensus         9 ~~~~~~~~~v~v~G-~G~sG~a~a~~L~-~~G~~V~-~~D~~~~--~~~~~l---~~~gi~~~~~~~~~~~~------~~   74 (473)
T PRK00141          9 ALPQELSGRVLVAG-AGVSGRGIAAMLS-ELGCDVV-VADDNET--ARHKLI---EVTGVADISTAEASDQL------DS   74 (473)
T ss_pred             hcccccCCeEEEEc-cCHHHHHHHHHHH-HCCCEEE-EECCChH--HHHHHH---HhcCcEEEeCCCchhHh------cC
Confidence            34555667899999 6999999999887 5677655 5775321  122221   134666652  223333      37


Q ss_pred             ccEEEEcc--CchhHHHHHHHHHHcCCcEEE
Q 031216          107 RAVVIDFT--DASTVYDNVKQATAFGMRSVV  135 (163)
Q Consensus       107 ~DVVIDfT--~p~~~~~~~~~al~~G~~vVi  135 (163)
                      +|+|| .|  .|... +.+..|.+.|++++.
T Consensus        75 ~d~vV-~Spgi~~~~-p~~~~a~~~gi~v~~  103 (473)
T PRK00141         75 FSLVV-TSPGWRPDS-PLLVDAQSQGLEVIG  103 (473)
T ss_pred             CCEEE-eCCCCCCCC-HHHHHHHHCCCceee
Confidence            88877 55  24333 556677788888753

>PLN02650 dihydroflavonol-4-reductase

Probab=95.33  E-value=0.075  Score=44.87  Aligned_cols=33  Identities=27%  Similarity=0.379  Sum_probs=28.1

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid   68 (163)
                      ..+|.|.|++|.+|+.+++.+.+ .+.+++++..
T Consensus         5 ~k~iLVTGatGfIGs~l~~~L~~-~G~~V~~~~r   37 (351)
T PLN02650          5 KETVCVTGASGFIGSWLVMRLLE-RGYTVRATVR   37 (351)
T ss_pred             CCEEEEeCCcHHHHHHHHHHHHH-CCCEEEEEEc
Confidence            45899999999999999999985 5889887654

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=95.33  E-value=0.14  Score=45.64  Aligned_cols=105  Identities=17%  Similarity=0.197  Sum_probs=68.6

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-------CCCc------chh----hhccCCCCCCcceeCCHHH
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-------SVGE------DIG----MVCDMEQPLEIPVMSDLTM   96 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~-------~~g~------~~~----~l~g~~~~~gi~v~~~l~e   96 (163)
                      +..+|+|+| +|++|--++-+.. ..|+.++| +|.+       ..|+      +..    +...   ......++|+++
T Consensus         8 ~~~~I~ViG-LGYVGLPlA~~fA-~~G~~ViG-~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~---~g~lraTtd~~~   81 (436)
T COG0677           8 MSATIGVIG-LGYVGLPLAAAFA-SAGFKVIG-VDINQKKVDKLNRGESYIEEPDLDEVVKEAVE---SGKLRATTDPEE   81 (436)
T ss_pred             CceEEEEEc-cccccHHHHHHHH-HcCCceEe-EeCCHHHHHHHhCCcceeecCcHHHHHHHHHh---cCCceEecChhh
Confidence            348999999 9999998887776 67999997 5621       1121      111    1111   223455677776


Q ss_pred             HHhcccccCCccEEEEcc-C-------ch-----hHHHHHHHHHHcCCcEEEeCC---CCCHHHHHHHHHH
Q 031216           97 VLGSISQSKARAVVIDFT-D-------AS-----TVYDNVKQATAFGMRSVVYVP---HIQLETVSALSAF  151 (163)
Q Consensus        97 ll~~~~~~~~~DVVIDfT-~-------p~-----~~~~~~~~al~~G~~vVigtt---g~~~e~~~~L~~~  151 (163)
                      +       .++|++|.+- +       |+     .+.+-+...|+.|-=||++.|   |.+++-...|.+.
T Consensus        82 l-------~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~  145 (436)
T COG0677          82 L-------KECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEE  145 (436)
T ss_pred             c-------ccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhh
Confidence            5       3899988653 1       21     334556677899999999988   6677666655553

>PRK10675 UDP-galactose-4-epimerase; Provisional

Probab=95.32  E-value=0.16  Score=42.31  Aligned_cols=30  Identities=20%  Similarity=0.429  Sum_probs=26.3

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEE
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgv   66 (163)
                      |||.|+|++|.+|+.+++.+.+ .+.+++++
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~-~g~~V~~~   30 (338)
T PRK10675          1 MRVLVTGGSGYIGSHTCVQLLQ-NGHDVVIL   30 (338)
T ss_pred             CeEEEECCCChHHHHHHHHHHH-CCCeEEEE
Confidence            5899999999999999999875 58888875

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=95.32  E-value=0.13  Score=45.29  Aligned_cols=60  Identities=17%  Similarity=0.083  Sum_probs=42.1

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT  114 (163)
                      -.+|||+| .|+||+.+++.+. .-|+++.+ +|+.....          . +..-+.++++++.      .+|+|+...
T Consensus       116 gktvGIIG-~G~IG~~va~~l~-a~G~~V~~-~Dp~~~~~----------~-~~~~~~~l~ell~------~aDiV~lh~  175 (381)
T PRK00257        116 ERTYGVVG-AGHVGGRLVRVLR-GLGWKVLV-CDPPRQEA----------E-GDGDFVSLERILE------ECDVISLHT  175 (381)
T ss_pred             cCEEEEEC-CCHHHHHHHHHHH-HCCCEEEE-ECCccccc----------c-cCccccCHHHHHh------hCCEEEEeC
Confidence            36899999 7999999999987 56899874 56432100          0 1112468999985      899988544

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=95.32  E-value=0.14  Score=42.41  Aligned_cols=96  Identities=14%  Similarity=0.043  Sum_probs=51.8

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC-------CCcchhhhccCCCCCCcceeCCHHHHHhcccccCCcc
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-------VGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA  108 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~-------~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~D  108 (163)
                      +||+|+| .|.||..++..+.+ .+.++..+ ++..       .|.......+. ........++.+++.      .++|
T Consensus         1 mkI~IiG-~G~iG~~~a~~L~~-~g~~V~~~-~r~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~------~~~d   70 (305)
T PRK12921          1 MRIAVVG-AGAVGGTFGGRLLE-AGRDVTFL-VRPKRAKALRERGLVIRSDHGD-AVVPGPVITDPEELT------GPFD   70 (305)
T ss_pred             CeEEEEC-CCHHHHHHHHHHHH-CCCceEEE-ecHHHHHHHHhCCeEEEeCCCe-EEecceeecCHHHcc------CCCC
Confidence            5899999 59999999999875 46676644 3311       01110000000 001112345666554      3899


Q ss_pred             EEEEccCchhHHHHHHHH---HHcCCcEEEeCCCCC
Q 031216          109 VVIDFTDASTVYDNVKQA---TAFGMRSVVYVPHIQ  141 (163)
Q Consensus       109 VVIDfT~p~~~~~~~~~a---l~~G~~vVigttg~~  141 (163)
                      +||.++.+....+.+...   +..+..+|+-..|+.
T Consensus        71 ~vilavk~~~~~~~~~~l~~~~~~~~~ii~~~nG~~  106 (305)
T PRK12921         71 LVILAVKAYQLDAAIPDLKPLVGEDTVIIPLQNGIG  106 (305)
T ss_pred             EEEEEecccCHHHHHHHHHhhcCCCCEEEEeeCCCC
Confidence            998666554444444333   334555555445775

>TIGR01777 yfcH conserved hypothetical protein TIGR01777

Probab=95.31  E-value=0.14  Score=41.31  Aligned_cols=31  Identities=39%  Similarity=0.455  Sum_probs=26.3

Q ss_pred             EEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216           38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (163)
Q Consensus        38 V~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~   69 (163)
                      |.|.|++|.+|+.+++.+.+ .+.++.++..+
T Consensus         1 vlVtGatG~iG~~l~~~L~~-~g~~V~~~~r~   31 (292)
T TIGR01777         1 ILITGGTGFIGRALTQRLTK-DGHEVTILTRS   31 (292)
T ss_pred             CEEEcccchhhHHHHHHHHH-cCCEEEEEeCC
Confidence            57999999999999999875 57999886653

This model represents a clade of proteins of unknown function including the E. coli yfcH protein.

>PLN02260 probable rhamnose biosynthetic enzyme

Probab=95.31  E-value=0.25  Score=45.79  Aligned_cols=33  Identities=12%  Similarity=0.157  Sum_probs=28.3

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhc-CCcEEEEE
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKA-RGMEVAGA   66 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~-~~~eLvgv   66 (163)
                      +++||.|+|++|.+|+.+++.+.+. ++.+++++
T Consensus         5 ~~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~   38 (668)
T PLN02260          5 EPKNILITGAAGFIASHVANRLIRNYPDYKIVVL   38 (668)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEE
Confidence            4579999999999999999999865 47888765

>PRK06182 short chain dehydrogenase; Validated

Probab=95.26  E-value=0.38  Score=38.88  Aligned_cols=32  Identities=28%  Similarity=0.442  Sum_probs=26.9

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid   68 (163)
                      .++.|+|++|.+|+.+++.+.+ .+.+++++..
T Consensus         4 k~vlItGasggiG~~la~~l~~-~G~~V~~~~r   35 (273)
T PRK06182          4 KVALVTGASSGIGKATARRLAA-QGYTVYGAAR   35 (273)
T ss_pred             CEEEEECCCChHHHHHHHHHHH-CCCEEEEEeC
Confidence            5799999999999999999874 6888886543

>COG3268 Uncharacterized conserved protein [Function unknown]

Probab=95.25  E-value=0.054  Score=47.21  Aligned_cols=119  Identities=18%  Similarity=0.141  Sum_probs=70.7

Q ss_pred             CCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC-CCcchhhhccCC-CCCCcceeCCHHHHHhcccccCCccEE
Q 031216           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-VGEDIGMVCDME-QPLEIPVMSDLTMVLGSISQSKARAVV  110 (163)
Q Consensus        33 ~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~-~g~~~~~l~g~~-~~~gi~v~~~l~ell~~~~~~~~~DVV  110 (163)
                      .+..-+.|+||+|..|+.+++.+. +.+...+ +..++. .-..+...+|.. ..+.+-+-..++++.      ...+||
T Consensus         4 e~e~d~iiYGAtGy~G~lvae~l~-~~g~~~a-LAgRs~~kl~~l~~~LG~~~~~~p~~~p~~~~~~~------~~~~VV   75 (382)
T COG3268           4 EREYDIIIYGATGYAGGLVAEYLA-REGLTAA-LAGRSSAKLDALRASLGPEAAVFPLGVPAALEAMA------SRTQVV   75 (382)
T ss_pred             CcceeEEEEccccchhHHHHHHHH-HcCCchh-hccCCHHHHHHHHHhcCccccccCCCCHHHHHHHH------hcceEE
Confidence            345679999999999999999987 4566552 222211 001122222321 011111113445555      389999


Q ss_pred             EEccCchhH--HHHHHHHHHcCCcEEEeCCC-CC-HHHHHHH-HHHhhhcCeEEc
Q 031216          111 IDFTDASTV--YDNVKQATAFGMRSVVYVPH-IQ-LETVSAL-SAFCDKASMVST  160 (163)
Q Consensus       111 IDfT~p~~~--~~~~~~al~~G~~vVigttg-~~-~e~~~~L-~~~A~~~~Vv~t  160 (163)
                      +.+.-|-..  .+.+..|+.+|.|-.= -|| .. -|+...+ .+.|++.|+..-
T Consensus        76 lncvGPyt~~g~plv~aC~~~GTdY~D-iTGEi~~fe~~i~~yh~~A~~~Ga~Ii  129 (382)
T COG3268          76 LNCVGPYTRYGEPLVAACAAAGTDYAD-ITGEIMFFENSIDLYHAQAADAGARII  129 (382)
T ss_pred             EeccccccccccHHHHHHHHhCCCeee-ccccHHHHHHHHHHHHHHHHhcCCEEe
Confidence            988877665  5899999999999752 333 11 2444444 667887777653

>PRK06199 ornithine cyclodeaminase; Validated

Probab=95.23  E-value=0.045  Score=48.02  Aligned_cols=97  Identities=13%  Similarity=0.167  Sum_probs=61.0

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHh-cCCcEEEEEEecCCCCcchhhhcc-CCCCC----CcceeCCHHHHHhcccccCCccE
Q 031216           36 IKVIINGAVKEIGRAAVIAVTK-ARGMEVAGAIDSHSVGEDIGMVCD-MEQPL----EIPVMSDLTMVLGSISQSKARAV  109 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~-~~~~eLvgvid~~~~g~~~~~l~g-~~~~~----gi~v~~~l~ell~~~~~~~~~DV  109 (163)
                      -+++|+| +|.+++.+++.+.. .|+++=+-+.+++..  .+..+.. +....    .+.+.+|.++++.      ..|+
T Consensus       156 ~~l~iiG-~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~--~a~~f~~~~~~~~~~~~~v~~~~s~~eav~------~ADI  226 (379)
T PRK06199        156 KVVGLLG-PGVMGKTILAAFMAVCPGIDTIKIKGRGQK--SLDSFATWVAETYPQITNVEVVDSIEEVVR------GSDI  226 (379)
T ss_pred             CEEEEEC-CcHHHHHHHHHHHHhcCCccEEEEECCCHH--HHHHHHHHHHHhcCCCceEEEeCCHHHHHc------CCCE
Confidence            6899999 69999999999887 456888888886531  1112111 00011    2556799999985      8999


Q ss_pred             EEEccCchh----HHHHH-HHHHHcCCcEE-EeCCCCC
Q 031216          110 VIDFTDAST----VYDNV-KQATAFGMRSV-VYVPHIQ  141 (163)
Q Consensus       110 VIDfT~p~~----~~~~~-~~al~~G~~vV-igttg~~  141 (163)
                      |+=+|....    ..+++ ...++.|.||. +|+-.++
T Consensus       227 VvtaT~s~~~~~s~~Pv~~~~~lkpG~hv~~ig~~eld  264 (379)
T PRK06199        227 VTYCNSGETGDPSTYPYVKREWVKPGAFLLMPAACRID  264 (379)
T ss_pred             EEEccCCCCCCCCcCcEecHHHcCCCcEEecCCcccCC
Confidence            885553111    11333 33467888876 4444444

>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]

Probab=95.20  E-value=0.042  Score=48.15  Aligned_cols=96  Identities=24%  Similarity=0.288  Sum_probs=63.4

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC----------------CCcc----hhhhc-cCCCCCCccee--
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS----------------VGED----IGMVC-DMEQPLEIPVM--   91 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~----------------~g~~----~~~l~-g~~~~~gi~v~--   91 (163)
                      ...|.|+|| |+.|--.+..+. ..|+-=.|++|.+.                .|+.    +..++ .+.....+..|  
T Consensus        66 ~s~VLVVGa-GGLGcPa~~YLa-aaGvG~lGiVD~DvVe~sNlhRQVlh~ea~vg~~Ka~sA~~~lr~lNs~v~v~~y~~  143 (427)
T KOG2017|consen   66 NSSVLVVGA-GGLGCPAAQYLA-AAGVGRLGIVDYDVVELSNLHRQVLHTEARVGMHKAESAAAFLRRLNSHVEVQTYNE  143 (427)
T ss_pred             CccEEEEcc-CCCCCHHHHHHH-HcCCCeecccccceeehhhHHHHHhhhhhhhhhHHHHHHHHHHHhcCCCceeeechh
Confidence            357999995 999999988876 67888889998431                1111    11111 11112222222  


Q ss_pred             ----CCHHHHHhcccccCCccEEEEcc-CchhHHHHHHHHHHcCCcEEEeCC
Q 031216           92 ----SDLTMVLGSISQSKARAVVIDFT-DASTVYDNVKQATAFGMRSVVYVP  138 (163)
Q Consensus        92 ----~~l~ell~~~~~~~~~DVVIDfT-~p~~~~~~~~~al~~G~~vVigtt  138 (163)
                          ++..+++      +..|||.|+| ++.+-+-.-..|..-|+++|+|..
T Consensus       144 ~L~~sNa~~Ii------~~YdvVlDCTDN~~TRYLisD~CVlLgkpLVSgSa  189 (427)
T KOG2017|consen  144 FLSSSNAFDII------KQYDVVLDCTDNVPTRYLISDVCVLLGKPLVSGSA  189 (427)
T ss_pred             hccchhHHHHh------hccceEEEcCCCccchhhhhhHHHHcCCccccccc
Confidence                4555666      4899999999 455556666889999999999874

>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

Probab=95.16  E-value=0.29  Score=41.96  Aligned_cols=65  Identities=15%  Similarity=0.091  Sum_probs=43.4

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEc
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDf  113 (163)
                      .-.++||+| +|++|+.+++.+..-=|+++. ..|+... .+...      ..++. +.++++++.      ..|+|+..
T Consensus       144 ~gktvGIiG-~G~IG~~va~~l~~~fgm~V~-~~~~~~~-~~~~~------~~~~~-~~~l~ell~------~sDvv~lh  207 (323)
T PRK15409        144 HHKTLGIVG-MGRIGMALAQRAHFGFNMPIL-YNARRHH-KEAEE------RFNAR-YCDLDTLLQ------ESDFVCII  207 (323)
T ss_pred             CCCEEEEEc-ccHHHHHHHHHHHhcCCCEEE-EECCCCc-hhhHH------hcCcE-ecCHHHHHH------hCCEEEEe
Confidence            347899999 799999999987623478887 3554311 11111      22332 569999996      89998855


Q ss_pred             c
Q 031216          114 T  114 (163)
Q Consensus       114 T  114 (163)
                      .
T Consensus       208 ~  208 (323)
T PRK15409        208 L  208 (323)
T ss_pred             C
Confidence            4

>COG0743 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Lipid metabolism]

Probab=95.16  E-value=0.18  Score=44.33  Aligned_cols=99  Identities=15%  Similarity=0.076  Sum_probs=61.3

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCc-EEEEEEecCCC---------------C---cchhhhccCCCCCCccee---C
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSHSV---------------G---EDIGMVCDMEQPLEIPVM---S   92 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~-eLvgvid~~~~---------------g---~~~~~l~g~~~~~gi~v~---~   92 (163)
                      |.|+.|.|++|-+|...++.+.++|+- +++++....+.               .   ....+.+... ..++.++   .
T Consensus         1 ~k~i~iLGSTGSIG~qtLdVi~~~p~~f~vval~ag~n~~~l~~q~~~f~P~~v~~~d~~~~~~l~~~-~~~~~v~~G~~   79 (385)
T COG0743           1 MKKLTILGSTGSIGTQTLDVIRRNPDKFEVVALAAGKNVELLAEQIREFKPKYVVIADESAAKELEDL-LPGTEVLVGEE   79 (385)
T ss_pred             CceEEEEecCCchhHHHHHHHHhCCCcEEEEEEecCCcHHHHHHHHHHhCCceEEecChHHHHHHHhh-ccCceEEecHH
Confidence            579999999999999999999998875 88888773210               0   0000111000 0123333   2


Q ss_pred             CHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeCC
Q 031216           93 DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP  138 (163)
Q Consensus        93 ~l~ell~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigtt  138 (163)
                      .+.++..    ..++|+|+..-.=.....-...++++||.+....-
T Consensus        80 ~l~e~a~----~~~~d~Vm~AivG~aGL~pTlaAi~aGK~iaLANK  121 (385)
T COG0743          80 GLCELAA----EDDADVVMNAIVGAAGLLPTLAAIKAGKTIALANK  121 (385)
T ss_pred             HHHHHHh----cCCCCEEeehhhhhcccHHHHHHHHcCCceeecch
Confidence            3334443    46789988554444445566788999999887554

>TIGR01179 galE UDP-glucose-4-epimerase

Probab=95.13  E-value=0.18  Score=41.19  Aligned_cols=29  Identities=28%  Similarity=0.421  Sum_probs=24.6

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEE
Q 031216           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (163)
Q Consensus        37 rV~VvGa~G~mG~~i~~~i~~~~~~eLvgv   66 (163)
                      ||.|+|++|.+|+.+++.+.+ .+.++.++
T Consensus         1 kvlV~GatG~iG~~l~~~l~~-~g~~V~~~   29 (328)
T TIGR01179         1 KILVTGGAGYIGSHTVRQLLE-SGHEVVVL   29 (328)
T ss_pred             CEEEeCCCCHHHHHHHHHHHh-CCCeEEEE
Confidence            689999999999999999875 46787654

This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.

>PRK08057 cobalt-precorrin-6x reductase; Reviewed

Probab=95.13  E-value=0.17  Score=41.96  Aligned_cols=86  Identities=21%  Similarity=0.301  Sum_probs=56.4

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcce----e---CCHHHHHhcccccCC
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV----M---SDLTMVLGSISQSKA  106 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v----~---~~l~ell~~~~~~~~  106 (163)
                      .|.+|.|.|++ .=|+.+++.+.+. +..+..-+... .|.  ..      ..++++    +   +++.+.+.    +.+
T Consensus         1 ~~~~IlvlgGT-~egr~la~~L~~~-g~~v~~Svat~-~g~--~~------~~~~~v~~G~l~~~~~l~~~l~----~~~   65 (248)
T PRK08057          1 MMPRILLLGGT-SEARALARALAAA-GVDIVLSLAGR-TGG--PA------DLPGPVRVGGFGGAEGLAAYLR----EEG   65 (248)
T ss_pred             CCceEEEEech-HHHHHHHHHHHhC-CCeEEEEEccC-CCC--cc------cCCceEEECCCCCHHHHHHHHH----HCC
Confidence            36789999964 6689999888754 67666544432 222  11      112222    2   34455554    489


Q ss_pred             ccEEEEccCchhH---HHHHHHHHHcCCcEE
Q 031216          107 RAVVIDFTDASTV---YDNVKQATAFGMRSV  134 (163)
Q Consensus       107 ~DVVIDfT~p~~~---~~~~~~al~~G~~vV  134 (163)
                      +++|||.|+|-+.   ......|.+.|++.+
T Consensus        66 i~~VIDATHPfA~~is~~a~~ac~~~~ipyi   96 (248)
T PRK08057         66 IDLVIDATHPYAAQISANAAAACRALGIPYL   96 (248)
T ss_pred             CCEEEECCCccHHHHHHHHHHHHHHhCCcEE
Confidence            9999999999654   345578899999988

>PLN02986 cinnamyl-alcohol dehydrogenase family protein

Probab=95.12  E-value=0.11  Score=43.15  Aligned_cols=34  Identities=24%  Similarity=0.206  Sum_probs=29.0

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~   70 (163)
                      .+|.|.|++|.+|+.+++.+.+ .+.++++.+++.
T Consensus         6 ~~vlVTGatG~iG~~l~~~L~~-~g~~V~~~~r~~   39 (322)
T PLN02986          6 KLVCVTGASGYIASWIVKLLLL-RGYTVKATVRDL   39 (322)
T ss_pred             CEEEEECCCcHHHHHHHHHHHH-CCCEEEEEECCC
Confidence            5899999999999999999885 588988877643

>PRK12464 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional

Probab=95.11  E-value=0.13  Score=45.40  Aligned_cols=115  Identities=10%  Similarity=0.067  Sum_probs=65.3

Q ss_pred             EEcCCCHHHHHHHHHHHhcCC-cEEEEEEecCCCC---cchhhh----------------ccCCCCCCcceeCCHHHHHh
Q 031216           40 INGAVKEIGRAAVIAVTKARG-MEVAGAIDSHSVG---EDIGMV----------------CDMEQPLEIPVMSDLTMVLG   99 (163)
Q Consensus        40 VvGa~G~mG~~i~~~i~~~~~-~eLvgvid~~~~g---~~~~~l----------------~g~~~~~gi~v~~~l~ell~   99 (163)
                      |.|+||-+|+..++.+.++|+ ++++++...+...   +.+.++                .......++.++...+.+. 
T Consensus         1 ILGsTGSIG~qtLdVi~~~~d~f~v~~Laa~~n~~~L~~q~~~f~p~~v~i~~~~~~~~l~~~l~~~~~~v~~G~~~l~-   79 (383)
T PRK12464          1 ILGSTGSIGTSALDVVSAHPEHFKVVGLTANYNIELLEQQIKRFQPRIVSVADKELADTLRTRLSANTSKITYGTDGLI-   79 (383)
T ss_pred             CCccccHHHHHHHHHHHhCccccEEEEEECCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHhccCCCcEEEECHHHHH-
Confidence            579999999999999988755 9999998843110   001110                0000011233433332222 


Q ss_pred             cccccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhc
Q 031216          100 SISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKA  155 (163)
Q Consensus       100 ~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~~  155 (163)
                      ++.+..++|.|+....=.....-...+++.|+.+-...-+---.-.+.+.+.+++.
T Consensus        80 ~l~~~~~~D~vv~AivG~aGL~pt~~Ai~~gk~iaLANKESLV~aG~li~~~~~~~  135 (383)
T PRK12464         80 AVATHPGSDLVLSSVVGAAGLLPTIEALKAKKDIALANKETLVAAGHIVTDLAKQN  135 (383)
T ss_pred             HHHcCCCCCEEEEhhhcHhhHHHHHHHHHCCCcEEEechhhHhhhHHHHHHHHHHc
Confidence            12223578999966555556777888999999988755432122233444455543

>PRK05865 hypothetical protein; Provisional

Probab=95.10  E-value=0.18  Score=48.71  Aligned_cols=32  Identities=25%  Similarity=0.494  Sum_probs=27.2

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid   68 (163)
                      +||.|+|++|.+|+.+++.+.+ .+.+++++..
T Consensus         1 MkILVTGATGfIGs~La~~Ll~-~G~~Vv~l~R   32 (854)
T PRK05865          1 MRIAVTGASGVLGRGLTARLLS-QGHEVVGIAR   32 (854)
T ss_pred             CEEEEECCCCHHHHHHHHHHHH-CcCEEEEEEC
Confidence            4899999999999999999874 6888887654

>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like

Probab=95.08  E-value=0.27  Score=40.46  Aligned_cols=94  Identities=14%  Similarity=0.148  Sum_probs=55.6

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC-----CC-------cchh--------hhc-cCCCCCCccee-CCH
Q 031216           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-----VG-------EDIG--------MVC-DMEQPLEIPVM-SDL   94 (163)
Q Consensus        37 rV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~-----~g-------~~~~--------~l~-g~~~~~gi~v~-~~l   94 (163)
                      ||.|+| .|..|.++++.+. ..|+.=.-++|.+.     .+       .|++        +.+ .+.....+..+ ..+
T Consensus         1 kVlvvG-~GGlG~eilk~La-~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~i   78 (234)
T cd01484           1 KVLLVG-AGGIGCELLKNLA-LMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKV   78 (234)
T ss_pred             CEEEEC-CCHHHHHHHHHHH-HcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEeccC
Confidence            689999 5999999999997 56777777888421     01       1111        000 00001112111 222


Q ss_pred             -------HHHHhcccccCCccEEEEccCchhHH-HHHHHHHHcCCcEEEeCC
Q 031216           95 -------TMVLGSISQSKARAVVIDFTDASTVY-DNVKQATAFGMRSVVYVP  138 (163)
Q Consensus        95 -------~ell~~~~~~~~~DVVIDfT~p~~~~-~~~~~al~~G~~vVigtt  138 (163)
                             ++.+      .++|+||++...-... ..-..|.+.++|+|-+-+
T Consensus        79 ~~~~~~~~~f~------~~~DvVi~a~Dn~~aR~~ln~~c~~~~iplI~~g~  124 (234)
T cd01484          79 GPEQDFNDTFF------EQFHIIVNALDNIIARRYVNGMLIFLIVPLIESGT  124 (234)
T ss_pred             ChhhhchHHHH------hCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcc
Confidence                   2333      3899999987544444 455788999999986544

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.07  E-value=0.18  Score=44.77  Aligned_cols=88  Identities=17%  Similarity=0.157  Sum_probs=50.4

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC-C-cchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEE
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-G-EDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~-g-~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVID  112 (163)
                      ..||.|+| .|..|...++.+. ..+.+++ ++|.... . ....+.+   .+.|+.++..-...+.     ..+|+||.
T Consensus        16 ~~~v~viG-~G~~G~~~A~~L~-~~G~~V~-~~d~~~~~~~~~~~~~l---~~~gv~~~~~~~~~~~-----~~~D~Vv~   84 (480)
T PRK01438         16 GLRVVVAG-LGVSGFAAADALL-ELGARVT-VVDDGDDERHRALAAIL---EALGATVRLGPGPTLP-----EDTDLVVT   84 (480)
T ss_pred             CCEEEEEC-CCHHHHHHHHHHH-HCCCEEE-EEeCCchhhhHHHHHHH---HHcCCEEEECCCcccc-----CCCCEEEE
Confidence            35899999 5999999988876 5788866 4663211 1 1111111   1446666522111122     47898885


Q ss_pred             cc-CchhHHHHHHHHHHcCCcEE
Q 031216          113 FT-DASTVYDNVKQATAFGMRSV  134 (163)
Q Consensus       113 fT-~p~~~~~~~~~al~~G~~vV  134 (163)
                      .+ .|. ..+.+..+.+.|++++
T Consensus        85 s~Gi~~-~~~~~~~a~~~gi~v~  106 (480)
T PRK01438         85 SPGWRP-DAPLLAAAADAGIPVW  106 (480)
T ss_pred             CCCcCC-CCHHHHHHHHCCCeec
Confidence            44 222 2245566677788764

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=95.07  E-value=0.12  Score=44.24  Aligned_cols=99  Identities=17%  Similarity=0.162  Sum_probs=60.9

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeC--CHHHHHhcccccCCccEEEEc
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS--DLTMVLGSISQSKARAVVIDF  113 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~--~l~ell~~~~~~~~~DVVIDf  113 (163)
                      -+|.|.|++|..|...++.+. .-+...+++..++.. .+...-+|-   ..+--|.  ++.+.+.++..+..+|+|+|.
T Consensus       144 ~~VLV~gaaGgVG~~aiQlAk-~~G~~~v~~~~s~~k-~~~~~~lGA---d~vi~y~~~~~~~~v~~~t~g~gvDvv~D~  218 (326)
T COG0604         144 ETVLVHGAAGGVGSAAIQLAK-ALGATVVAVVSSSEK-LELLKELGA---DHVINYREEDFVEQVRELTGGKGVDVVLDT  218 (326)
T ss_pred             CEEEEecCCchHHHHHHHHHH-HcCCcEEEEecCHHH-HHHHHhcCC---CEEEcCCcccHHHHHHHHcCCCCceEEEEC
Confidence            579999999999999988876 455466666664321 111111111   1111132  254444333233579999998


Q ss_pred             cCchhHHHHHHHHHHcCCcEEEeCCC
Q 031216          114 TDASTVYDNVKQATAFGMRSVVYVPH  139 (163)
Q Consensus       114 T~p~~~~~~~~~al~~G~~vVigttg  139 (163)
                      .-.+.+.+.+......|.-+.+|.++
T Consensus       219 vG~~~~~~~l~~l~~~G~lv~ig~~~  244 (326)
T COG0604         219 VGGDTFAASLAALAPGGRLVSIGALS  244 (326)
T ss_pred             CCHHHHHHHHHHhccCCEEEEEecCC
Confidence            88888877666666667777778764

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=95.06  E-value=0.4  Score=40.43  Aligned_cols=107  Identities=15%  Similarity=0.100  Sum_probs=54.4

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEE-EEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEc
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEV-AGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eL-vgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDf  113 (163)
                      +.+|+|+| .|.||+.+++.+. ..+... +-..|...........+|..  .  ....+......     ...|+||-.
T Consensus         3 ~~~v~IvG-~GliG~s~a~~l~-~~g~~v~i~g~d~~~~~~~~a~~lgv~--d--~~~~~~~~~~~-----~~aD~Viva   71 (279)
T COG0287           3 SMKVGIVG-LGLMGGSLARALK-EAGLVVRIIGRDRSAATLKAALELGVI--D--ELTVAGLAEAA-----AEADLVIVA   71 (279)
T ss_pred             CcEEEEEC-CchHHHHHHHHHH-HcCCeEEEEeecCcHHHHHHHhhcCcc--c--ccccchhhhhc-----ccCCEEEEe
Confidence            57899999 7999999999987 456655 32333221111111112211  0  00122212221     478999955


Q ss_pred             cCchhHHHHHHHHHH-cCCc-EEEeCCCCCHHHHHHHHHHh
Q 031216          114 TDASTVYDNVKQATA-FGMR-SVVYVPHIQLETVSALSAFC  152 (163)
Q Consensus       114 T~p~~~~~~~~~al~-~G~~-vVigttg~~~e~~~~L~~~A  152 (163)
                      ++.....+.++.... -... +|+.++..-..-.+.+.+..
T Consensus        72 vPi~~~~~~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~  112 (279)
T COG0287          72 VPIEATEEVLKELAPHLKKGAIVTDVGSVKSSVVEAMEKYL  112 (279)
T ss_pred             ccHHHHHHHHHHhcccCCCCCEEEecccccHHHHHHHHHhc
Confidence            555566677665553 2222 34555544334344444443

>PRK06823 ornithine cyclodeaminase; Validated

Probab=95.04  E-value=0.05  Score=46.50  Aligned_cols=91  Identities=12%  Similarity=0.034  Sum_probs=60.1

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCC--CCCcceeCCHHHHHhcccccCCccEEEE
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQ--PLEIPVMSDLTMVLGSISQSKARAVVID  112 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~--~~gi~v~~~l~ell~~~~~~~~~DVVID  112 (163)
                      ..+++|+| +|..++.+++.+.....++=+-+.+++..  +...+...-.  ...+.+.++.+++..      ..|+|+=
T Consensus       128 ~~~l~iiG-~G~qA~~~~~a~~~v~~i~~v~v~~r~~~--~a~~~~~~~~~~~~~v~~~~~~~~av~------~ADIV~t  198 (315)
T PRK06823        128 VSAIGIVG-TGIQARMQLMYLKNVTDCRQLWVWGRSET--ALEEYRQYAQALGFAVNTTLDAAEVAH------AANLIVT  198 (315)
T ss_pred             CCEEEEEC-CcHHHHHHHHHHHhcCCCCEEEEECCCHH--HHHHHHHHHHhcCCcEEEECCHHHHhc------CCCEEEE
Confidence            46899999 69999999999998888888888886532  2222221001  123444789999884      9999985


Q ss_pred             ccCchhHHHHH-HHHHHcCCcEE-Ee
Q 031216          113 FTDASTVYDNV-KQATAFGMRSV-VY  136 (163)
Q Consensus       113 fT~p~~~~~~~-~~al~~G~~vV-ig  136 (163)
                      +| +... +.+ ...++.|.||. ||
T Consensus       199 aT-~s~~-P~~~~~~l~~G~hi~~iG  222 (315)
T PRK06823        199 TT-PSRE-PLLQAEDIQPGTHITAVG  222 (315)
T ss_pred             ec-CCCC-ceeCHHHcCCCcEEEecC
Confidence            44 3322 222 23467898876 44

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=95.04  E-value=0.14  Score=46.43  Aligned_cols=32  Identities=19%  Similarity=0.316  Sum_probs=26.5

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~   70 (163)
                      .||+|+| .|.||+.++..+. ..|++++ ++|++
T Consensus         6 ~kV~VIG-aG~MG~gIA~~la-~aG~~V~-l~d~~   37 (503)
T TIGR02279         6 VTVAVIG-AGAMGAGIAQVAA-SAGHQVL-LYDIR   37 (503)
T ss_pred             cEEEEEC-cCHHHHHHHHHHH-hCCCeEE-EEeCC
Confidence            5799999 5999999999987 5689887 56753

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=95.01  E-value=0.031  Score=42.17  Aligned_cols=71  Identities=21%  Similarity=0.224  Sum_probs=42.6

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC---CC--cchhhhccCCCCCCcceeCCHHHHHhcccccCCccEE
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS---VG--EDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVV  110 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~---~g--~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVV  110 (163)
                      +||+|+|++|..|..++-.+...+-..=..++|...   .|  .|+.+..... ...+.+..+..+.+      .+.|+|
T Consensus         1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~-~~~~~i~~~~~~~~------~~aDiv   73 (141)
T PF00056_consen    1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPL-PSPVRITSGDYEAL------KDADIV   73 (141)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGS-TEEEEEEESSGGGG------TTESEE
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhc-cccccccccccccc------ccccEE
Confidence            599999977999999999887664433244788541   12  2333322211 12334444444445      489998


Q ss_pred             EEc
Q 031216          111 IDF  113 (163)
Q Consensus       111 IDf  113 (163)
                      |..
T Consensus        74 vit   76 (141)
T PF00056_consen   74 VIT   76 (141)
T ss_dssp             EET
T ss_pred             EEe
Confidence            854

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase

Probab=94.99  E-value=0.3  Score=42.75  Aligned_cols=85  Identities=21%  Similarity=0.196  Sum_probs=51.1

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchh---hhccCCCCCCcceeCCH-HHHHhcccccCCccEEEE
Q 031216           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIG---MVCDMEQPLEIPVMSDL-TMVLGSISQSKARAVVID  112 (163)
Q Consensus        37 rV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~---~l~g~~~~~gi~v~~~l-~ell~~~~~~~~~DVVID  112 (163)
                      ||.++| .|+.|..+++.+. ..|.++. +.|.... .+..   .++.  ...|+.++... .+.+      ..+|+|| 
T Consensus         1 ~~~~iG-~G~~G~a~a~~l~-~~G~~V~-~sD~~~~-~~~~~~~~~~~--~~~gi~~~~g~~~~~~------~~~d~vv-   67 (433)
T TIGR01087         1 KILILG-LGKTGRAVARFLH-KKGAEVT-VTDLKPN-EELEPSMGQLR--LNEGSVLHTGLHLEDL------NNADLVV-   67 (433)
T ss_pred             CEEEEE-eCHhHHHHHHHHH-HCCCEEE-EEeCCCC-ccchhHHHHHh--hccCcEEEecCchHHh------ccCCEEE-
Confidence            589999 6999998888876 6788877 4774321 1111   1110  02356554222 2333      3789877 


Q ss_pred             cc--CchhHHHHHHHHHHcCCcEEE
Q 031216          113 FT--DASTVYDNVKQATAFGMRSVV  135 (163)
Q Consensus       113 fT--~p~~~~~~~~~al~~G~~vVi  135 (163)
                      .|  .|.. .+.+..|.+.|++++.
T Consensus        68 ~sp~i~~~-~p~~~~a~~~~i~i~~   91 (433)
T TIGR01087        68 KSPGIPPD-HPLVQAAAKRGIPVVG   91 (433)
T ss_pred             ECCCCCCC-CHHHHHHHHCCCcEEE
Confidence            55  2433 3566777888888765

>PRK05225 ketol-acid reductoisomerase; Validated

Probab=94.97  E-value=0.074  Score=48.09  Aligned_cols=96  Identities=15%  Similarity=0.178  Sum_probs=56.9

Q ss_pred             ceeeeccCCCCC----CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe-----cCCCCcchhhhccCCCCCCcceeC
Q 031216           22 KRFISCSTNPPQ----SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID-----SHSVGEDIGMVCDMEQPLEIPVMS   92 (163)
Q Consensus        22 ~~~~~~~~~~~~----~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid-----~~~~g~~~~~l~g~~~~~gi~v~~   92 (163)
                      -||+-+.+.|-.    +..+|+|+| +|..|+.++..+. ..++.++-...     ....+++...      ..|..+ .
T Consensus        19 ~r~~~r~ef~~~~~~LkgKtIaIIG-yGSqG~AqAlNLr-dSGvnVvvglr~~~id~~~~s~~kA~------~dGF~v-~   89 (487)
T PRK05225         19 CRFMDRDEFADGASYLKGKKIVIVG-CGAQGLNQGLNMR-DSGLDISYALRKEAIAEKRASWRKAT------ENGFKV-G   89 (487)
T ss_pred             ceecchhhccchhHHhCCCEEEEEc-cCHHHHHHhCCCc-cccceeEEeccccccccccchHHHHH------hcCCcc-C
Confidence            366666666433    357999999 7999998887765 56888873332     2122222211      123343 5


Q ss_pred             CHHHHHhcccccCCccEEEEccCchhH----HHHHHHHHHcCCcE
Q 031216           93 DLTMVLGSISQSKARAVVIDFTDASTV----YDNVKQATAFGMRS  133 (163)
Q Consensus        93 ~l~ell~~~~~~~~~DVVIDfT~p~~~----~~~~~~al~~G~~v  133 (163)
                      ++++++.      .+|+|+..+ |+..    .+.+...++.|..+
T Consensus        90 ~~~Ea~~------~ADvVviLl-PDt~q~~v~~~i~p~LK~Ga~L  127 (487)
T PRK05225         90 TYEELIP------QADLVINLT-PDKQHSDVVRAVQPLMKQGAAL  127 (487)
T ss_pred             CHHHHHH------hCCEEEEcC-ChHHHHHHHHHHHhhCCCCCEE
Confidence            7888875      999999554 5443    23333444444443

>PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase

Probab=94.96  E-value=0.094  Score=42.82  Aligned_cols=57  Identities=14%  Similarity=0.117  Sum_probs=37.8

Q ss_pred             EEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc
Q 031216           39 IINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (163)
Q Consensus        39 ~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT  114 (163)
                      .|+|++|.+|+.+++.+.+ .+.+++.+.++. .    +         ++.-..++++++..    .++|+||++.
T Consensus         1 lItGa~GfiG~~l~~~L~~-~g~~v~~~~~~~-~----~---------Dl~~~~~l~~~~~~----~~~d~Vih~A   57 (306)
T PLN02725          1 FVAGHRGLVGSAIVRKLEA-LGFTNLVLRTHK-E----L---------DLTRQADVEAFFAK----EKPTYVILAA   57 (306)
T ss_pred             CcccCCCcccHHHHHHHHh-CCCcEEEeeccc-c----C---------CCCCHHHHHHHHhc----cCCCEEEEee
Confidence            3789999999999999975 466655443321 1    1         12213466677663    5789999885

>PRK08177 short chain dehydrogenase; Provisional

Probab=94.96  E-value=0.19  Score=39.44  Aligned_cols=33  Identities=24%  Similarity=0.401  Sum_probs=27.2

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid   68 (163)
                      |.++.|+|++|.+|+.+++.+.+ .+.+++.+..
T Consensus         1 ~k~vlItG~sg~iG~~la~~l~~-~G~~V~~~~r   33 (225)
T PRK08177          1 KRTALIIGASRGLGLGLVDRLLE-RGWQVTATVR   33 (225)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHh-CCCEEEEEeC
Confidence            35799999999999999999985 5888876543

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=94.93  E-value=0.047  Score=46.01  Aligned_cols=70  Identities=16%  Similarity=0.213  Sum_probs=43.0

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcce--eCCHHHHHhcccccCCccEEE
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV--MSDLTMVLGSISQSKARAVVI  111 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v--~~~l~ell~~~~~~~~~DVVI  111 (163)
                      ...||+|+| .|+||+.+++.+... ++++. +++++.  .+.....    ..+...  ++++++++.      +.|+||
T Consensus       150 ~gk~v~IiG-~G~iG~avA~~L~~~-G~~V~-v~~R~~--~~~~~~~----~~g~~~~~~~~l~~~l~------~aDiVi  214 (287)
T TIGR02853       150 HGSNVMVLG-FGRTGMTIARTFSAL-GARVF-VGARSS--ADLARIT----EMGLIPFPLNKLEEKVA------EIDIVI  214 (287)
T ss_pred             CCCEEEEEc-ChHHHHHHHHHHHHC-CCEEE-EEeCCH--HHHHHHH----HCCCeeecHHHHHHHhc------cCCEEE
Confidence            346899999 699999999999754 67766 556532  1111111    112211  345666664      889988


Q ss_pred             EccCchhH
Q 031216          112 DFTDASTV  119 (163)
Q Consensus       112 DfT~p~~~  119 (163)
                      ..+ |...
T Consensus       215 nt~-P~~i  221 (287)
T TIGR02853       215 NTI-PALV  221 (287)
T ss_pred             ECC-ChHH
Confidence            644 5443

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>KOG0172 consensus Lysine-ketoglutarate reductase/saccharopine dehydrogenase [Amino acid transport and metabolism]

Probab=94.93  E-value=0.081  Score=46.93  Aligned_cols=115  Identities=14%  Similarity=0.072  Sum_probs=77.6

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcc---e-eCCHH-HHHhcccccCCccE
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP---V-MSDLT-MVLGSISQSKARAV  109 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~---v-~~~l~-ell~~~~~~~~~DV  109 (163)
                      +.+|.+.| +|++.+-.+..+.+..++++.-+.+..   .++.++..   ..++.   . ..+.+ .+...   -.+.|+
T Consensus         2 ~~~vlllg-sg~v~~p~~d~ls~~~dv~vtva~~~~---~~~~~~~~---~~~~~av~ldv~~~~~~L~~~---v~~~D~   71 (445)
T KOG0172|consen    2 KKGVLLLG-SGFVSRPVADFLSRKKDVNVTVASRTL---KDAEALVK---GINIKAVSLDVADEELALRKE---VKPLDL   71 (445)
T ss_pred             CcceEEec-CccccchHHHHHhhcCCceEEEehhhH---HHHHHHhc---CCCccceEEEccchHHHHHhh---hcccce
Confidence            45799999 699999999999999999999776642   23333331   11121   1 12222 11111   148899


Q ss_pred             EEEccCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeEEcC
Q 031216          110 VIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVSTG  161 (163)
Q Consensus       110 VIDfT~p~~~~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv~tg  161 (163)
                      ++-.++-..+.-.++.|+.++.++|.  +.+-..+.++|.+.+...|+...+
T Consensus        72 viSLlP~t~h~lVaK~~i~~~~~~vt--sSyv~pe~~~L~~~~v~AG~ti~~  121 (445)
T KOG0172|consen   72 VISLLPYTFHPLVAKGCIITKEDSVT--SSYVDPELEELEKAAVPAGSTIMN  121 (445)
T ss_pred             eeeeccchhhHHHHHHHHHhhccccc--ccccCHHHHhhhhhccCCCceEec
Confidence            88555444556677899999999764  446555689999999999987654

>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2

Probab=94.93  E-value=0.25  Score=44.35  Aligned_cols=93  Identities=15%  Similarity=0.170  Sum_probs=54.4

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCc-----EEEEEEecCC-----CC-------cchh--------hhc-cCCCCCCcce
Q 031216           37 KVIINGAVKEIGRAAVIAVTKARGM-----EVAGAIDSHS-----VG-------EDIG--------MVC-DMEQPLEIPV   90 (163)
Q Consensus        37 rV~VvGa~G~mG~~i~~~i~~~~~~-----eLvgvid~~~-----~g-------~~~~--------~l~-g~~~~~gi~v   90 (163)
                      ||.|+| +|..|.++++.+. ..|+     .-+-++|.+.     .+       .+++        +.+ .+.....+..
T Consensus         1 kVlvVG-aGGlGcE~lKnLa-l~Gv~~g~~G~I~IvD~D~Ie~SNLnRQfLf~~~dIGk~Ka~vAa~~l~~lNp~v~I~a   78 (435)
T cd01490           1 KVFLVG-AGAIGCELLKNFA-LMGVGTGESGEITVTDMDNIEKSNLNRQFLFRPHDVGKPKSEVAAAAVKAMNPDLKITA   78 (435)
T ss_pred             CEEEEC-CCHHHHHHHHHHH-HcCCCcCCCCeEEEECCCCccccccCcCccCChhHcCcHHHHHHHHHHHHHCCCCEEEE
Confidence            689999 5999999999987 6788     5566788421     11       1111        000 0100111222


Q ss_pred             e-CCH---------HHHHhcccccCCccEEEEccCc-hhHHHHHHHHHHcCCcEEEeC
Q 031216           91 M-SDL---------TMVLGSISQSKARAVVIDFTDA-STVYDNVKQATAFGMRSVVYV  137 (163)
Q Consensus        91 ~-~~l---------~ell~~~~~~~~~DVVIDfT~p-~~~~~~~~~al~~G~~vVigt  137 (163)
                      + ..+         ++.+      ..+|+||++... ++-...-..|...++|+|-+-
T Consensus        79 ~~~~v~~~~~~~~~~~f~------~~~DvVi~alDn~~aR~~vn~~C~~~~iPli~~g  130 (435)
T cd01490          79 LQNRVGPETEHIFNDEFW------EKLDGVANALDNVDARMYVDRRCVYYRKPLLESG  130 (435)
T ss_pred             EecccChhhhhhhhHHHh------cCCCEEEECCCCHHHHHHHHHHHHHhCCCEEEEe
Confidence            2 111         1223      378999988744 444455688999999998443

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.

>PRK12320 hypothetical protein; Provisional

Probab=94.92  E-value=0.17  Score=47.87  Aligned_cols=88  Identities=15%  Similarity=0.168  Sum_probs=51.4

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcc-hhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGED-IGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~-~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT  114 (163)
                      |||.|+|++|.+|+.+++.+.+ .+.++.++........+ -.++.    ..++.- ..+.+++      .++|+||.+.
T Consensus         1 MkILVTGAaGFIGs~La~~Ll~-~G~~Vi~ldr~~~~~~~~~ve~v----~~Dl~d-~~l~~al------~~~D~VIHLA   68 (699)
T PRK12320          1 MQILVTDATGAVGRSVTRQLIA-AGHTVSGIAQHPHDALDPRVDYV----CASLRN-PVLQELA------GEADAVIHLA   68 (699)
T ss_pred             CEEEEECCCCHHHHHHHHHHHh-CCCEEEEEeCChhhcccCCceEE----EccCCC-HHHHHHh------cCCCEEEEcC
Confidence            4899999999999999999874 67888875432110000 00000    001100 1133444      3799999886


Q ss_pred             Cch----------hHHHHHHHHHHcCCcEEE
Q 031216          115 DAS----------TVYDNVKQATAFGMRSVV  135 (163)
Q Consensus       115 ~p~----------~~~~~~~~al~~G~~vVi  135 (163)
                      .+.          .....+..|.+.|+.+|.
T Consensus        69 a~~~~~~~~vNv~Gt~nLleAA~~~GvRiV~   99 (699)
T PRK12320         69 PVDTSAPGGVGITGLAHVANAAARAGARLLF   99 (699)
T ss_pred             ccCccchhhHHHHHHHHHHHHHHHcCCeEEE
Confidence            421          123456777788888764

>PRK14982 acyl-ACP reductase; Provisional

Probab=94.91  E-value=0.064  Score=46.57  Aligned_cols=34  Identities=24%  Similarity=0.351  Sum_probs=25.8

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCc-EEEEEEec
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDS   69 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~-eLvgvid~   69 (163)
                      ..+|+|+||+|.||+.+++.+....+. +|+ ++++
T Consensus       155 ~k~VLVtGAtG~IGs~lar~L~~~~gv~~li-lv~R  189 (340)
T PRK14982        155 KATVAVVGATGDIGSAVCRWLDAKTGVAELL-LVAR  189 (340)
T ss_pred             CCEEEEEccChHHHHHHHHHHHhhCCCCEEE-EEcC
Confidence            368999999999999999999754443 444 4454

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=94.89  E-value=0.11  Score=46.00  Aligned_cols=81  Identities=19%  Similarity=0.241  Sum_probs=48.3

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCC--cceeCCHHHHHhcccccCCccEEEE
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE--IPVMSDLTMVLGSISQSKARAVVID  112 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~g--i~v~~~l~ell~~~~~~~~~DVVID  112 (163)
                      ..+|+|+| +|.||+.+++.+.. .++.-+-+++++.  .++.++..   ..+  ...++++.+++.      .+|+||.
T Consensus       180 ~~~VlViG-aG~iG~~~a~~L~~-~G~~~V~v~~rs~--~ra~~la~---~~g~~~i~~~~l~~~l~------~aDvVi~  246 (417)
T TIGR01035       180 GKKALLIG-AGEMGELVAKHLLR-KGVGKILIANRTY--ERAEDLAK---ELGGEAVKFEDLEEYLA------EADIVIS  246 (417)
T ss_pred             CCEEEEEC-ChHHHHHHHHHHHH-CCCCEEEEEeCCH--HHHHHHHH---HcCCeEeeHHHHHHHHh------hCCEEEE
Confidence            36899999 59999999999876 4643344566542  12222221   111  112346666664      8999998


Q ss_pred             ccC-chhH--HHHHHHHHH
Q 031216          113 FTD-ASTV--YDNVKQATA  128 (163)
Q Consensus       113 fT~-p~~~--~~~~~~al~  128 (163)
                      +|. |+..  .+.+..+..
T Consensus       247 aT~s~~~ii~~e~l~~~~~  265 (417)
T TIGR01035       247 STGAPHPIVSKEDVERALR  265 (417)
T ss_pred             CCCCCCceEcHHHHHHHHh
Confidence            873 3333  355665544

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=94.88  E-value=0.3  Score=42.00  Aligned_cols=80  Identities=20%  Similarity=0.174  Sum_probs=52.1

Q ss_pred             ccccceeeeccCCCCC--CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHH
Q 031216           18 NVKAKRFISCSTNPPQ--SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLT   95 (163)
Q Consensus        18 ~~~~~~~~~~~~~~~~--~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~   95 (163)
                      .++..+|-. ...+..  .-..|||+| +|++|+.+++.+. .=|+++.+ +|+.. .++...      ..++.-.+++|
T Consensus       124 ~~~~g~W~~-~~~~g~el~gkTvGIiG-~G~IG~~va~~l~-afgm~v~~-~d~~~-~~~~~~------~~~~~~~~~Ld  192 (324)
T COG0111         124 SQRRGEWDR-KAFRGTELAGKTVGIIG-LGRIGRAVAKRLK-AFGMKVIG-YDPYS-PRERAG------VDGVVGVDSLD  192 (324)
T ss_pred             HHHcCCccc-cccccccccCCEEEEEC-CCHHHHHHHHHHH-hCCCeEEE-ECCCC-chhhhc------cccceecccHH
Confidence            445555544 333333  246899999 7999999999987 55899985 56411 111111      22344457999


Q ss_pred             HHHhcccccCCccEEEEcc
Q 031216           96 MVLGSISQSKARAVVIDFT  114 (163)
Q Consensus        96 ell~~~~~~~~~DVVIDfT  114 (163)
                      +++.      ..|+|+-.+
T Consensus       193 ~lL~------~sDiv~lh~  205 (324)
T COG0111         193 ELLA------EADILTLHL  205 (324)
T ss_pred             HHHh------hCCEEEEcC
Confidence            9996      899988655

>KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion]

Probab=94.86  E-value=0.061  Score=45.98  Aligned_cols=74  Identities=20%  Similarity=0.210  Sum_probs=50.0

Q ss_pred             CCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC---CCcchhhhccCCCCCCccee---CCHHHHHhccccc
Q 031216           31 PPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS---VGEDIGMVCDMEQPLEIPVM---SDLTMVLGSISQS  104 (163)
Q Consensus        31 ~~~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~---~g~~~~~l~g~~~~~gi~v~---~~l~ell~~~~~~  104 (163)
                      ..+.+.||+|.||.|++|+-+.-.+...|.+.-.+.+|...   .+.|+..   +.....+.-|   +.++.++      
T Consensus        24 ~~~~~~KVAvlGAaGGIGQPLSLLlK~np~Vs~LaLYDi~~~~GVaaDlSH---I~T~s~V~g~~g~~~L~~al------   94 (345)
T KOG1494|consen   24 GSQRGLKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIANTPGVAADLSH---INTNSSVVGFTGADGLENAL------   94 (345)
T ss_pred             cccCcceEEEEecCCccCccHHHHHhcCcccceeeeeecccCCcccccccc---cCCCCceeccCChhHHHHHh------
Confidence            44567999999999999999988888899998899999432   2223222   2112222223   4566666      


Q ss_pred             CCccEEEEc
Q 031216          105 KARAVVIDF  113 (163)
Q Consensus       105 ~~~DVVIDf  113 (163)
                      +..|+||.-
T Consensus        95 ~~advVvIP  103 (345)
T KOG1494|consen   95 KGADVVVIP  103 (345)
T ss_pred             cCCCEEEec
Confidence            489987753

>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A

Probab=94.81  E-value=0.27  Score=37.24  Aligned_cols=106  Identities=15%  Similarity=0.198  Sum_probs=63.7

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc--
Q 031216           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT--  114 (163)
Q Consensus        37 rV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT--  114 (163)
                      +|+++.=+|.||..++..+. ..++-+..++..   |.++          +    -++.++++.+.++++..+|.-+-  
T Consensus         3 ~valisQSG~~~~~~~~~~~-~~g~g~s~~vs~---Gn~~----------d----v~~~d~l~~~~~D~~t~~I~ly~E~   64 (138)
T PF13607_consen    3 GVALISQSGALGTAILDWAQ-DRGIGFSYVVSV---GNEA----------D----VDFADLLEYLAEDPDTRVIVLYLEG   64 (138)
T ss_dssp             SEEEEES-HHHHHHHHHHHH-HTT-EESEEEE----TT-S----------S----S-HHHHHHHHCT-SS--EEEEEES-
T ss_pred             CEEEEECCHHHHHHHHHHHH-HcCCCeeEEEEe---Cccc----------c----CCHHHHHHHHhcCCCCCEEEEEccC
Confidence            57888889999999999877 558877776663   2111          1    14445555554567777776553  


Q ss_pred             --CchhHHHHHHHHHHcCCcEEEeCCCCCHH--------------HHHHHHHHhhhcCeEEcC
Q 031216          115 --DASTVYDNVKQATAFGMRSVVYVPHIQLE--------------TVSALSAFCDKASMVSTG  161 (163)
Q Consensus       115 --~p~~~~~~~~~al~~G~~vVigttg~~~e--------------~~~~L~~~A~~~~Vv~tg  161 (163)
                        .|....+.++.+..+ ||||+-++|-+++              ..+...++.++.||+..-
T Consensus        65 ~~d~~~f~~~~~~a~~~-KPVv~lk~Grt~~g~~aa~sHTgslag~~~~~~a~~~~aGv~~v~  126 (138)
T PF13607_consen   65 IGDGRRFLEAARRAARR-KPVVVLKAGRTEAGARAAASHTGSLAGDDAVYDAALRQAGVVRVD  126 (138)
T ss_dssp             -S-HHHHHHHHHHHCCC-S-EEEEE---------------------HHHHHHHHHHCTEEEES
T ss_pred             CCCHHHHHHHHHHHhcC-CCEEEEeCCCchhhhhhhhccCCcccCcHHHHHHHHHHcCceEEC
Confidence              577777888877777 9999877764322              345678888999988754

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=94.81  E-value=0.19  Score=47.30  Aligned_cols=35  Identities=23%  Similarity=0.179  Sum_probs=27.8

Q ss_pred             CCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (163)
Q Consensus        33 ~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~   69 (163)
                      ....||+|+|+ |.||+.++..+....|++++ ++|.
T Consensus       302 ~~i~~v~ViGa-G~mG~~iA~~~a~~~G~~V~-l~d~  336 (699)
T TIGR02440       302 AKIKKVGILGG-GLMGGGIASVTATKAGIPVR-IKDI  336 (699)
T ss_pred             ccccEEEEECC-cHHHHHHHHHHHHHcCCeEE-EEeC
Confidence            45568999995 99999999877655788887 5674

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>PLN02240 UDP-glucose 4-epimerase

Probab=94.78  E-value=0.32  Score=40.68  Aligned_cols=32  Identities=19%  Similarity=0.295  Sum_probs=27.2

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvi   67 (163)
                      +.||.|.|++|.+|+.+++.+.+ .+.+++++.
T Consensus         5 ~~~vlItGatG~iG~~l~~~L~~-~g~~V~~~~   36 (352)
T PLN02240          5 GRTILVTGGAGYIGSHTVLQLLL-AGYKVVVID   36 (352)
T ss_pred             CCEEEEECCCChHHHHHHHHHHH-CCCEEEEEe
Confidence            36899999999999999999875 578888754

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=94.74  E-value=0.076  Score=44.94  Aligned_cols=33  Identities=24%  Similarity=0.280  Sum_probs=28.2

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid   68 (163)
                      .+||.|+|++|.+|+.+++.+.+ .+.+++++.+
T Consensus        10 ~~~vLVtG~~GfIG~~l~~~L~~-~G~~V~~~~r   42 (353)
T PLN02896         10 TGTYCVTGATGYIGSWLVKLLLQ-RGYTVHATLR   42 (353)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHH-CCCEEEEEeC
Confidence            36899999999999999999985 5889887654

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=94.74  E-value=0.3  Score=46.14  Aligned_cols=35  Identities=17%  Similarity=0.238  Sum_probs=27.7

Q ss_pred             CCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216           32 PQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (163)
Q Consensus        32 ~~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~   69 (163)
                      +....||+|+|+ |.||+.++..+. ..|++++ ++|.
T Consensus       310 ~~~i~~v~ViGa-G~mG~gIA~~~a-~~G~~V~-l~d~  344 (715)
T PRK11730        310 AKPVKQAAVLGA-GIMGGGIAYQSA-SKGVPVI-MKDI  344 (715)
T ss_pred             ccccceEEEECC-chhHHHHHHHHH-hCCCeEE-EEeC
Confidence            334568999995 999999999877 5689887 5674

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=94.73  E-value=0.47  Score=42.20  Aligned_cols=107  Identities=15%  Similarity=0.135  Sum_probs=61.3

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC-------CC------cchhhhccCCCCCC-cceeCCHHHHHhcc
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-------VG------EDIGMVCDMEQPLE-IPVMSDLTMVLGSI  101 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~-------~g------~~~~~l~g~~~~~g-i~v~~~l~ell~~~  101 (163)
                      |||.|+| +|+.|-...-.+. .-|.++++ +|...       .|      ..+.+++......| ...++|+++++.  
T Consensus         1 MkI~viG-tGYVGLv~g~~lA-~~GHeVv~-vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~--   75 (414)
T COG1004           1 MKITVIG-TGYVGLVTGACLA-ELGHEVVC-VDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVK--   75 (414)
T ss_pred             CceEEEC-CchHHHHHHHHHH-HcCCeEEE-EeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHh--
Confidence            6899999 7999998887776 45788886 46320       11      11333332110112 566788888875  


Q ss_pred             cccCCccEEEEcc-Cchh---H--HHHHHHHH------HcCCcEEEeCC----CCCHHHHHHHHHH
Q 031216          102 SQSKARAVVIDFT-DAST---V--YDNVKQAT------AFGMRSVVYVP----HIQLETVSALSAF  151 (163)
Q Consensus       102 ~~~~~~DVVIDfT-~p~~---~--~~~~~~al------~~G~~vVigtt----g~~~e~~~~L~~~  151 (163)
                          ..|+++.++ +|..   .  ..++..++      ..+.++|+.++    |++++-.+.+.+.
T Consensus        76 ----~adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~  137 (414)
T COG1004          76 ----DADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREE  137 (414)
T ss_pred             ----cCCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhh
Confidence                899988765 3321   1  23333322      22447777675    6665544444443

>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function

Probab=94.73  E-value=0.41  Score=39.16  Aligned_cols=97  Identities=11%  Similarity=0.118  Sum_probs=66.7

Q ss_pred             CCHHHHHHHHHHHhcCCcE-EEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc-CchhHHH
Q 031216           44 VKEIGRAAVIAVTKARGME-VAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT-DASTVYD  121 (163)
Q Consensus        44 ~G~mG~~i~~~i~~~~~~e-Lvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT-~p~~~~~  121 (163)
                      .|.-|..++..+.+.+++. .+.+++.+.   ...++           .+++++.+..+   .+.|++|..+ +|+...+
T Consensus         5 ~G~yGeR~~~~i~~~~~~~~~v~~~~~p~---~l~ef-----------Id~pee~Lp~i---~~~Dl~I~y~lHPDl~~~   67 (217)
T PF02593_consen    5 DGKYGERVIENIKNYFDFCRSVIVYEIPE---DLPEF-----------IDDPEEYLPKI---PEADLLIAYGLHPDLTYE   67 (217)
T ss_pred             eCcchHHHHHHHHhcCCCCceEEEEeCCc---ccccc-----------ccChHHHccCC---CCCCEEEEeccCchhHHH
Confidence            5889999999999888887 333444321   11111           24566666542   6899999877 7888899


Q ss_pred             HHHHHHHcCCcEEEeCCCCC-HHHHHHHHHHhhhcCe
Q 031216          122 NVKQATAFGMRSVVYVPHIQ-LETVSALSAFCDKASM  157 (163)
Q Consensus       122 ~~~~al~~G~~vVigttg~~-~e~~~~L~~~A~~~~V  157 (163)
                      .++.+.+.|+..||....-. ....+.|++.+++.|+
T Consensus        68 l~~~~~e~g~kavIvp~~~~~~g~~~~lk~~~e~~gi  104 (217)
T PF02593_consen   68 LPEIAKEAGVKAVIVPSESPKPGLRRQLKKQLEEFGI  104 (217)
T ss_pred             HHHHHHHcCCCEEEEecCCCccchHHHHHHHHHhcCc
Confidence            99999999988887443222 2455678888888763

>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=94.72  E-value=0.17  Score=41.99  Aligned_cols=87  Identities=16%  Similarity=0.219  Sum_probs=52.3

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcce----e---CCHHHHHhcccccCCcc
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV----M---SDLTMVLGSISQSKARA  108 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v----~---~~l~ell~~~~~~~~~D  108 (163)
                      |||.|.|++ .=|+.+++.+.+... -++.++- +. |.+...-.    .....+    +   +.+.+.+.    +.++|
T Consensus         1 m~ILvlgGT-tE~r~la~~L~~~g~-v~~sv~t-~~-g~~~~~~~----~~~~~v~~G~lg~~~~l~~~l~----~~~i~   68 (249)
T PF02571_consen    1 MKILVLGGT-TEGRKLAERLAEAGY-VIVSVAT-SY-GGELLKPE----LPGLEVRVGRLGDEEGLAEFLR----ENGID   68 (249)
T ss_pred             CEEEEEech-HHHHHHHHHHHhcCC-EEEEEEh-hh-hHhhhccc----cCCceEEECCCCCHHHHHHHHH----hCCCc
Confidence            689999965 668889999886554 2222222 11 22111100    011111    1   33445554    48999


Q ss_pred             EEEEccCchhH---HHHHHHHHHcCCcEE
Q 031216          109 VVIDFTDASTV---YDNVKQATAFGMRSV  134 (163)
Q Consensus       109 VVIDfT~p~~~---~~~~~~al~~G~~vV  134 (163)
                      +|||.|+|-+.   ......|.+.|++.+
T Consensus        69 ~vIDATHPfA~~is~na~~a~~~~~ipyl   97 (249)
T PF02571_consen   69 AVIDATHPFAAEISQNAIEACRELGIPYL   97 (249)
T ss_pred             EEEECCCchHHHHHHHHHHHHhhcCcceE
Confidence            99999999654   345578899999988

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process

>KOG2733 consensus Uncharacterized membrane protein [Function unknown]

Probab=94.72  E-value=0.04  Score=48.44  Aligned_cols=119  Identities=17%  Similarity=0.167  Sum_probs=72.9

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHh---cCCcEEEEEEecCC-C---CcchhhhccC--CCCCCcceeCC-----HHHHHhc
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTK---ARGMEVAGAIDSHS-V---GEDIGMVCDM--EQPLEIPVMSD-----LTMVLGS  100 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~---~~~~eLvgvid~~~-~---g~~~~~l~g~--~~~~gi~v~~~-----l~ell~~  100 (163)
                      ..-+.|.||+|..|+.+++.+.+   .++..+.-+-.+.. .   -+.+++-.+-  ++.. +.+.++     ++|+.  
T Consensus         5 ~yDvVIyGASGfTG~yivee~v~~~~~~~~slavAGRn~~KL~~vL~~~~~k~~~~ls~~~-i~i~D~~n~~Sl~ema--   81 (423)
T KOG2733|consen    5 RYDVVIYGASGFTGKYIVEEAVSSQVFEGLSLAVAGRNEKKLQEVLEKVGEKTGTDLSSSV-ILIADSANEASLDEMA--   81 (423)
T ss_pred             eeeEEEEccccccceeeHHHHhhhhcccCceEEEecCCHHHHHHHHHHHhhccCCCcccce-EEEecCCCHHHHHHHH--
Confidence            46689999999999999998875   35555543322210 0   0111111110  1111 333333     55554  


Q ss_pred             ccccCCccEEEEccCchhH--HHHHHHHHHcCCcEE--EeCCCCCHHHHHHHHHHhhhcCeEEc
Q 031216          101 ISQSKARAVVIDFTDASTV--YDNVKQATAFGMRSV--VYVPHIQLETVSALSAFCDKASMVST  160 (163)
Q Consensus       101 ~~~~~~~DVVIDfT~p~~~--~~~~~~al~~G~~vV--igttg~~~e~~~~L~~~A~~~~Vv~t  160 (163)
                          ...-||+++.-|-.+  ...+++|+++|.|-|  .|.|.|=+.-..+-.+.|++.||..-
T Consensus        82 ----k~~~vivN~vGPyR~hGE~VVkacienG~~~vDISGEP~f~E~mq~kYhd~A~ekGVYIV  141 (423)
T KOG2733|consen   82 ----KQARVIVNCVGPYRFHGEPVVKACIENGTHHVDISGEPQFMERMQLKYHDLAKEKGVYIV  141 (423)
T ss_pred             ----hhhEEEEeccccceecCcHHHHHHHHcCCceeccCCCHHHHHHHHHHHHHHHHhcCeEEE
Confidence                478899988888776  578899999999876  55555522222345667888888654

>PRK06487 glycerate dehydrogenase; Provisional

Probab=94.72  E-value=0.26  Score=42.04  Aligned_cols=58  Identities=17%  Similarity=0.012  Sum_probs=41.4

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT  114 (163)
                      -.+|||+| +|++|+.+++.+. -=|+++.+ +|+..  .+  .        .. -+.++++++.      ..|+|+...
T Consensus       148 gktvgIiG-~G~IG~~vA~~l~-~fgm~V~~-~~~~~--~~--~--------~~-~~~~l~ell~------~sDiv~l~l  205 (317)
T PRK06487        148 GKTLGLLG-HGELGGAVARLAE-AFGMRVLI-GQLPG--RP--A--------RP-DRLPLDELLP------QVDALTLHC  205 (317)
T ss_pred             CCEEEEEC-CCHHHHHHHHHHh-hCCCEEEE-ECCCC--Cc--c--------cc-cccCHHHHHH------hCCEEEECC
Confidence            36899999 7999999999987 45889875 45421  10  0        01 1358999995      899988655

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=94.71  E-value=0.14  Score=45.31  Aligned_cols=80  Identities=18%  Similarity=0.260  Sum_probs=47.6

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCC--cceeCCHHHHHhcccccCCccEEEE
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE--IPVMSDLTMVLGSISQSKARAVVID  112 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~g--i~v~~~l~ell~~~~~~~~~DVVID  112 (163)
                      ..+|+|+| +|.||+.+++.+.. .+.+-+-+++++.  .++..+..   ..+  +..++++.+.+.      ++|+||.
T Consensus       182 ~~~vlViG-aG~iG~~~a~~L~~-~G~~~V~v~~r~~--~ra~~la~---~~g~~~~~~~~~~~~l~------~aDvVI~  248 (423)
T PRK00045        182 GKKVLVIG-AGEMGELVAKHLAE-KGVRKITVANRTL--ERAEELAE---EFGGEAIPLDELPEALA------EADIVIS  248 (423)
T ss_pred             CCEEEEEC-chHHHHHHHHHHHH-CCCCeEEEEeCCH--HHHHHHHH---HcCCcEeeHHHHHHHhc------cCCEEEE
Confidence            36899999 59999999998874 5664444566542  12222221   112  212345555553      8999998


Q ss_pred             ccC-chhH--HHHHHHHH
Q 031216          113 FTD-ASTV--YDNVKQAT  127 (163)
Q Consensus       113 fT~-p~~~--~~~~~~al  127 (163)
                      +|. |+..  .+.+..++
T Consensus       249 aT~s~~~~i~~~~l~~~~  266 (423)
T PRK00045        249 STGAPHPIIGKGMVERAL  266 (423)
T ss_pred             CCCCCCcEEcHHHHHHHH
Confidence            873 3333  45555554

>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor

Probab=94.71  E-value=0.046  Score=42.70  Aligned_cols=73  Identities=23%  Similarity=0.195  Sum_probs=42.2

Q ss_pred             EEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCC-CCCCcceeCCHHHHHhcccccCCccEEEEccC
Q 031216           38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDME-QPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (163)
Q Consensus        38 V~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~-~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT~  115 (163)
                      |.|+|++|.+|+.+++.+. ..+.+++.+..++............. ...++.=-+++++++..    .++|+||++..
T Consensus         1 IlI~GatG~iG~~l~~~l~-~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~----~~~d~vi~~a~   74 (236)
T PF01370_consen    1 ILITGATGFIGSALVRQLL-KKGHEVIVLSRSSNSESFEEKKLNVEFVIGDLTDKEQLEKLLEK----ANIDVVIHLAA   74 (236)
T ss_dssp             EEEETTTSHHHHHHHHHHH-HTTTEEEEEESCSTGGHHHHHHTTEEEEESETTSHHHHHHHHHH----HTESEEEEEBS
T ss_pred             EEEEccCCHHHHHHHHHHH-HcCCccccccccccccccccccceEEEEEeeccccccccccccc----cCceEEEEeec
Confidence            7899999999999999998 56777775555432111000000000 01111111355666653    47899999864

The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....

>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional

Probab=94.70  E-value=0.084  Score=44.37  Aligned_cols=32  Identities=22%  Similarity=0.391  Sum_probs=24.8

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid   68 (163)
                      +||.|.|++|.+|+.+++.+.+. +.+.+..++
T Consensus         1 mkilITGgtG~iG~~l~~~L~~~-g~~~v~~~~   32 (352)
T PRK10084          1 MKILVTGGAGFIGSAVVRHIINN-TQDSVVNVD   32 (352)
T ss_pred             CeEEEECCCcHHhHHHHHHHHHh-CCCeEEEec
Confidence            48999999999999999999865 444333455

>TIGR01472 gmd GDP-mannose 4,6-dehydratase

Probab=94.64  E-value=0.085  Score=44.41  Aligned_cols=31  Identities=26%  Similarity=0.347  Sum_probs=26.9

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031216           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (163)
Q Consensus        37 rV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid   68 (163)
                      +|.|+|++|.+|+.+++.+.+ .+.+++++..
T Consensus         2 ~vlVTGatGfIG~~l~~~L~~-~G~~V~~~~r   32 (343)
T TIGR01472         2 IALITGITGQDGSYLAEFLLE-KGYEVHGLIR   32 (343)
T ss_pred             eEEEEcCCCcHHHHHHHHHHH-CCCEEEEEec
Confidence            799999999999999999985 5889887644

Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.64  E-value=0.39  Score=43.13  Aligned_cols=84  Identities=20%  Similarity=0.162  Sum_probs=52.2

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeC--CHHHHHhcccccCCccEEEEc
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS--DLTMVLGSISQSKARAVVIDF  113 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~--~l~ell~~~~~~~~~DVVIDf  113 (163)
                      .||.|+| .|+.|...++.+. ..+.++.+ .|....  ....+.    +.++.++.  ...+.+.      .+|+||..
T Consensus        13 ~~v~V~G-~G~sG~aa~~~L~-~~G~~v~~-~D~~~~--~~~~l~----~~g~~~~~~~~~~~~l~------~~D~VV~S   77 (488)
T PRK03369         13 APVLVAG-AGVTGRAVLAALT-RFGARPTV-CDDDPD--ALRPHA----ERGVATVSTSDAVQQIA------DYALVVTS   77 (488)
T ss_pred             CeEEEEc-CCHHHHHHHHHHH-HCCCEEEE-EcCCHH--HHHHHH----hCCCEEEcCcchHhHhh------cCCEEEEC
Confidence            4799999 6999999998765 67888876 774321  122211    33554432  2233343      78988854


Q ss_pred             c-CchhHHHHHHHHHHcCCcEEE
Q 031216          114 T-DASTVYDNVKQATAFGMRSVV  135 (163)
Q Consensus       114 T-~p~~~~~~~~~al~~G~~vVi  135 (163)
                      . .|.. .+.+..+.+.|++++.
T Consensus        78 pGi~~~-~p~~~~a~~~gi~v~~   99 (488)
T PRK03369         78 PGFRPT-APVLAAAAAAGVPIWG   99 (488)
T ss_pred             CCCCCC-CHHHHHHHHCCCcEee
Confidence            4 3433 3567777788888654

>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.55  E-value=0.5  Score=41.61  Aligned_cols=87  Identities=16%  Similarity=0.206  Sum_probs=50.9

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeC-C-HHHHHhcccccCCccEEEEc
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS-D-LTMVLGSISQSKARAVVIDF  113 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~-~-l~ell~~~~~~~~~DVVIDf  113 (163)
                      --|+|+| .|+.|..+++.+. ..|.++. +.|.........++...  ..++.++. . -.+.+      .++|+|| .
T Consensus         7 ~~~~v~G-~G~sG~s~a~~L~-~~G~~v~-~~D~~~~~~~~~~l~~~--~~g~~~~~~~~~~~~~------~~~d~vV-~   74 (448)
T PRK03803          7 GLHIVVG-LGKTGLSVVRFLA-RQGIPFA-VMDSREQPPGLDTLARE--FPDVELRCGGFDCELL------VQASEII-I   74 (448)
T ss_pred             CeEEEEe-ecHhHHHHHHHHH-hCCCeEE-EEeCCCCchhHHHHHhh--cCCcEEEeCCCChHHh------cCCCEEE-E
Confidence            3589999 5999999777766 6788876 47743211111122100  03666642 1 22334      2789877 5


Q ss_pred             cC--chhHHHHHHHHHHcCCcEEE
Q 031216          114 TD--ASTVYDNVKQATAFGMRSVV  135 (163)
Q Consensus       114 T~--p~~~~~~~~~al~~G~~vVi  135 (163)
                      |+  |.. .+.+..|.+.|++++.
T Consensus        75 sp~i~~~-~p~~~~a~~~~i~i~~   97 (448)
T PRK03803         75 SPGLALD-TPALRAAAAMGIEVIG   97 (448)
T ss_pred             CCCCCCC-CHHHHHHHHCCCcEEE
Confidence            52  333 3566777888888764

>PRK15204 undecaprenyl-phosphate galactose phosphotransferase; Provisional

Probab=94.54  E-value=0.53  Score=42.41  Aligned_cols=86  Identities=16%  Similarity=0.224  Sum_probs=54.8

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcC--CcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEc
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKAR--GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~--~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDf  113 (163)
                      .|+.|+| +|..|+.+++.+.+++  +.+++|.+|.+..+.   .      -.++|++.+.+++... .....+|++|-.
T Consensus       147 rrvLIIG-aG~~a~~l~~~L~~~~~~g~~vVGfIDd~~~~~---~------i~gvPVlg~~d~l~~~-~~~~~v~vIIAi  215 (476)
T PRK15204        147 KKTIILG-SGQNARGAYSALQSEEMMGFDVIAFFDTDASDA---E------INMLPVIKDTEIIWDL-NRTGDVHYILAY  215 (476)
T ss_pred             CeEEEEE-CCHHHHHHHHHHHhCccCCcEEEEEEcCCcccc---c------cCCCcccCCHHHHHHH-HHhCCCcEEEEe
Confidence            5799999 5999999999998665  789999999543211   1      2467777776543110 012456764432


Q ss_pred             cCch--hHHHHHHHHHHcCCc
Q 031216          114 TDAS--TVYDNVKQATAFGMR  132 (163)
Q Consensus       114 T~p~--~~~~~~~~al~~G~~  132 (163)
                      ..++  ...+.+..+.+.|+.
T Consensus       216 p~~~~~~r~~il~~l~~~gv~  236 (476)
T PRK15204        216 EYTELEKTHFWLRELSKHHCR  236 (476)
T ss_pred             CcCcHHHHHHHHHHHhhcCCe
Confidence            2222  334677788888874

>TIGR03022 WbaP_sugtrans Undecaprenyl-phosphate galactose phosphotransferase, WbaP

Probab=94.52  E-value=0.38  Score=42.59  Aligned_cols=88  Identities=15%  Similarity=0.191  Sum_probs=56.4

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcC--CcEEEEEEecCCCCcchhhhccCCCCCCcceeCC--HHHHHhcccccCCccEE
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKAR--GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSD--LTMVLGSISQSKARAVV  110 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~--~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~--l~ell~~~~~~~~~DVV  110 (163)
                      +-|+.|+| .|..|+.+++.+.+++  +.+++|.+|.+..  ..+..     -.++|++.+  +.+.+.    +.++|.|
T Consensus       125 ~rrvlIiG-ag~~~~~l~~~l~~~~~~g~~vvGfidd~~~--~~~~~-----i~g~pVlg~~~l~~~i~----~~~id~V  192 (456)
T TIGR03022       125 GRPAVIIG-AGQNAAILYRALQSNPQLGLRPLAVVDTDPA--ASGRL-----LTGLPVVGADDALRLYA----RTRYAYV  192 (456)
T ss_pred             CceEEEEe-CCHHHHHHHHHHhhCccCCcEEEEEEeCCcc--ccccc-----cCCCcccChhHHHHHHH----hCCCCEE
Confidence            46799999 5999999999987654  6899999995321  01110     235666654  333343    2678866


Q ss_pred             EEccCc----hhHHHHHHHHHHcCC-cEEE
Q 031216          111 IDFTDA----STVYDNVKQATAFGM-RSVV  135 (163)
Q Consensus       111 IDfT~p----~~~~~~~~~al~~G~-~vVi  135 (163)
                      + .+.|    +...+.+..+.+.|+ ++.+
T Consensus       193 i-IAip~~~~~~~~~ll~~l~~~~v~~V~~  221 (456)
T TIGR03022       193 I-VAMPGTQAEDMARLVRKLGALHFRNVLI  221 (456)
T ss_pred             E-EecCCccHHHHHHHHHHHHhCCCeEEEE
Confidence            6 3433    334566777877888 5544

This model includes the enterobacterial enzymes, where the function is presumed to be identical to the S. typhimurium enzyme as well as a somewhat broader group which are likely to catalyze the same or highly similar reactions based on a phylogenetic tree-building analysis of the broader sugar transferase family. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. The most likely heterogeneity would be in the precise nature of the sugar molecule transferred.

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=94.52  E-value=0.43  Score=42.31  Aligned_cols=85  Identities=15%  Similarity=0.166  Sum_probs=51.6

Q ss_pred             CeeEEEEcCCCHHHHH-HHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeC-CHHHHHhcccccCCccEEEE
Q 031216           35 NIKVIINGAVKEIGRA-AVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS-DLTMVLGSISQSKARAVVID  112 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~-i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~-~l~ell~~~~~~~~~DVVID  112 (163)
                      ..||.|+| .|+.|.. +++.+. ..|.++. +.|.... ....++.    ..++.++. ...+.+      ..+|+|| 
T Consensus         7 ~~~v~viG-~G~sG~s~~a~~L~-~~G~~V~-~~D~~~~-~~~~~l~----~~gi~~~~~~~~~~~------~~~d~vv-   71 (461)
T PRK00421          7 IKRIHFVG-IGGIGMSGLAEVLL-NLGYKVS-GSDLKES-AVTQRLL----ELGAIIFIGHDAENI------KDADVVV-   71 (461)
T ss_pred             CCEEEEEE-EchhhHHHHHHHHH-hCCCeEE-EECCCCC-hHHHHHH----HCCCEEeCCCCHHHC------CCCCEEE-
Confidence            35899999 5999999 677765 6799976 4674321 1222321    34665542 222333      3789877 


Q ss_pred             cc--CchhHHHHHHHHHHcCCcEEE
Q 031216          113 FT--DASTVYDNVKQATAFGMRSVV  135 (163)
Q Consensus       113 fT--~p~~~~~~~~~al~~G~~vVi  135 (163)
                      .|  .|.. .+.++.|.++|++++.
T Consensus        72 ~spgi~~~-~~~~~~a~~~~i~i~~   95 (461)
T PRK00421         72 YSSAIPDD-NPELVAARELGIPVVR   95 (461)
T ss_pred             ECCCCCCC-CHHHHHHHHCCCcEEe
Confidence            44  2332 3456677788888754

>PLN02928 oxidoreductase family protein

Probab=94.50  E-value=0.23  Score=42.91  Aligned_cols=69  Identities=13%  Similarity=0.035  Sum_probs=43.5

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCC-------CCCCcceeCCHHHHHhcccccCCc
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDME-------QPLEIPVMSDLTMVLGSISQSKAR  107 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~-------~~~gi~v~~~l~ell~~~~~~~~~  107 (163)
                      -.+|+|+| +|+||+.+++.+. .=|+++.+ +|+... .......+.+       ..... -+.++++++.      ..
T Consensus       159 gktvGIiG-~G~IG~~vA~~l~-afG~~V~~-~dr~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~L~ell~------~a  227 (347)
T PLN02928        159 GKTVFILG-YGAIGIELAKRLR-PFGVKLLA-TRRSWT-SEPEDGLLIPNGDVDDLVDEKG-GHEDIYEFAG------EA  227 (347)
T ss_pred             CCEEEEEC-CCHHHHHHHHHHh-hCCCEEEE-ECCCCC-hhhhhhhccccccccccccccC-cccCHHHHHh------hC
Confidence            46899999 7999999999987 56899885 464311 0000000000       00011 3579999995      89


Q ss_pred             cEEEEcc
Q 031216          108 AVVIDFT  114 (163)
Q Consensus       108 DVVIDfT  114 (163)
                      |+|+...
T Consensus       228 DiVvl~l  234 (347)
T PLN02928        228 DIVVLCC  234 (347)
T ss_pred             CEEEECC
Confidence            9999654

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=94.49  E-value=0.051  Score=42.56  Aligned_cols=106  Identities=18%  Similarity=0.182  Sum_probs=53.9

Q ss_pred             ccCCCCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCC
Q 031216           27 CSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKA  106 (163)
Q Consensus        27 ~~~~~~~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~  106 (163)
                      +.+|-.-.-.++.|+| +|+.|+.+++.+.. -+.++. +++.++. +.+...     -.|..+. ++++++.      .
T Consensus        15 r~t~~~l~Gk~vvV~G-YG~vG~g~A~~lr~-~Ga~V~-V~e~DPi-~alqA~-----~dGf~v~-~~~~a~~------~   78 (162)
T PF00670_consen   15 RATNLMLAGKRVVVIG-YGKVGKGIARALRG-LGARVT-VTEIDPI-RALQAA-----MDGFEVM-TLEEALR------D   78 (162)
T ss_dssp             HHH-S--TTSEEEEE---SHHHHHHHHHHHH-TT-EEE-EE-SSHH-HHHHHH-----HTT-EEE--HHHHTT------T
T ss_pred             hcCceeeCCCEEEEeC-CCcccHHHHHHHhh-CCCEEE-EEECChH-HHHHhh-----hcCcEec-CHHHHHh------h
Confidence            4455444456899999 89999999999875 466664 5664321 111111     1244443 7888874      8


Q ss_pred             ccEEEEccCchhH--HHHHHHHHHcCCcEEEeCCC-CC-HHHHHHHHHH
Q 031216          107 RAVVIDFTDASTV--YDNVKQATAFGMRSVVYVPH-IQ-LETVSALSAF  151 (163)
Q Consensus       107 ~DVVIDfT~p~~~--~~~~~~al~~G~~vVigttg-~~-~e~~~~L~~~  151 (163)
                      .|++|-.|-+...  .++.. .++.|.-  +...| ++ +-+.+.|.+.
T Consensus        79 adi~vtaTG~~~vi~~e~~~-~mkdgai--l~n~Gh~d~Eid~~~L~~~  124 (162)
T PF00670_consen   79 ADIFVTATGNKDVITGEHFR-QMKDGAI--LANAGHFDVEIDVDALEAN  124 (162)
T ss_dssp             -SEEEE-SSSSSSB-HHHHH-HS-TTEE--EEESSSSTTSBTHHHHHTC
T ss_pred             CCEEEECCCCccccCHHHHH-HhcCCeE--EeccCcCceeEeecccccc
Confidence            9998866744443  34444 3555543  33333 33 2344556555

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=94.48  E-value=0.059  Score=47.84  Aligned_cols=69  Identities=14%  Similarity=0.126  Sum_probs=42.6

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT  114 (163)
                      .||.|+| +|.||+.+++.+.. .+..-+-++.++.  .++..+........+..++++.+.+.      ++|+||.+|
T Consensus       182 kkvlviG-aG~~a~~va~~L~~-~g~~~I~V~nRt~--~ra~~La~~~~~~~~~~~~~l~~~l~------~aDiVI~aT  250 (414)
T PRK13940        182 KNVLIIG-AGQTGELLFRHVTA-LAPKQIMLANRTI--EKAQKITSAFRNASAHYLSELPQLIK------KADIIIAAV  250 (414)
T ss_pred             CEEEEEc-CcHHHHHHHHHHHH-cCCCEEEEECCCH--HHHHHHHHHhcCCeEecHHHHHHHhc------cCCEEEECc
Confidence            6899999 59999999999975 4554444666543  22233322100011222456666664      899999877

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=94.45  E-value=0.35  Score=41.14  Aligned_cols=60  Identities=18%  Similarity=0.145  Sum_probs=42.7

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT  114 (163)
                      -.+|||+| +|++|+.+++.+. -=|+++.+ +|+..  ...        ..++. +.++++++.      ..|+|+...
T Consensus       145 gktvGIiG-~G~IG~~vA~~~~-~fgm~V~~-~d~~~--~~~--------~~~~~-~~~l~ell~------~sDvv~lh~  204 (311)
T PRK08410        145 GKKWGIIG-LGTIGKRVAKIAQ-AFGAKVVY-YSTSG--KNK--------NEEYE-RVSLEELLK------TSDIISIHA  204 (311)
T ss_pred             CCEEEEEC-CCHHHHHHHHHHh-hcCCEEEE-ECCCc--ccc--------ccCce-eecHHHHhh------cCCEEEEeC
Confidence            47899999 7999999999986 45889875 56431  110        11222 568999995      899988654

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=94.41  E-value=0.48  Score=38.51  Aligned_cols=74  Identities=22%  Similarity=0.275  Sum_probs=45.3

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcE--EEEEEecCC---CCcc------hhhhccCCCCCC-cceeCCHHHHHhccc
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGME--VAGAIDSHS---VGED------IGMVCDMEQPLE-IPVMSDLTMVLGSIS  102 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~e--Lvgvid~~~---~g~~------~~~l~g~~~~~g-i~v~~~l~ell~~~~  102 (163)
                      ..||.|+|+ |.+|+.+++.+.. .++.  =+.++|++.   ..+.      ..++..   ..+ -....++.+.+.   
T Consensus        25 ~~rvlvlGA-GgAg~aiA~~L~~-~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~---~~~~~~~~~~l~~~l~---   96 (226)
T cd05311          25 EVKIVINGA-GAAGIAIARLLLA-AGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAK---ETNPEKTGGTLKEALK---   96 (226)
T ss_pred             CCEEEEECc-hHHHHHHHHHHHH-cCcCcceEEEEeCCCccccccchhhhHHHHHHHH---HhccCcccCCHHHHHh---
Confidence            368999995 9999999999875 4776  556788651   1110      011211   110 011136766664   


Q ss_pred             ccCCccEEEEccCchhH
Q 031216          103 QSKARAVVIDFTDASTV  119 (163)
Q Consensus       103 ~~~~~DVVIDfT~p~~~  119 (163)
                         ++|+||..|.+...
T Consensus        97 ---~~dvlIgaT~~G~~  110 (226)
T cd05311          97 ---GADVFIGVSRPGVV  110 (226)
T ss_pred             ---cCCEEEeCCCCCCC
Confidence               79999988864443

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase

Probab=94.41  E-value=0.35  Score=40.72  Aligned_cols=31  Identities=13%  Similarity=0.207  Sum_probs=25.4

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcC-CcEEEEE
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKAR-GMEVAGA   66 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~-~~eLvgv   66 (163)
                      .+|.|+|++|.+|+.+++.+.+.. +.+++..
T Consensus         5 k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~   36 (324)
T TIGR03589         5 KSILITGGTGSFGKAFISRLLENYNPKKIIIY   36 (324)
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEE
Confidence            579999999999999999998763 3676644

This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.40  E-value=0.42  Score=41.85  Aligned_cols=85  Identities=13%  Similarity=0.104  Sum_probs=50.7

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEccC
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT~  115 (163)
                      .||.|+| .|.+|..+++.+. ..+.++. ++|............+   .   ....+.+...      .++|++|-...
T Consensus         4 ~~i~iiG-lG~~G~slA~~l~-~~G~~V~-g~D~~~~~~~~~~~~~---~---~~~~~~~~~~------~~~dlvV~s~g   68 (418)
T PRK00683          4 QRVVVLG-LGVTGKSIARFLA-QKGVYVI-GVDKSLEALQSCPYIH---E---RYLENAEEFP------EQVDLVVRSPG   68 (418)
T ss_pred             CeEEEEE-ECHHHHHHHHHHH-HCCCEEE-EEeCCccccchhHHHh---h---hhcCCcHHHh------cCCCEEEECCC
Confidence            4799999 6999999888876 5677765 4674321100000000   0   0112333333      26898883332


Q ss_pred             chhHHHHHHHHHHcCCcEEE
Q 031216          116 ASTVYDNVKQATAFGMRSVV  135 (163)
Q Consensus       116 p~~~~~~~~~al~~G~~vVi  135 (163)
                      .....+.+..|+++|+++|.
T Consensus        69 i~~~~~~l~~A~~~g~~vv~   88 (418)
T PRK00683         69 IKKEHPWVQAAIASHIPVVT   88 (418)
T ss_pred             CCCCcHHHHHHHHCCCcEEE
Confidence            33447889999999999765

>PLN02989 cinnamyl-alcohol dehydrogenase family protein

Probab=94.39  E-value=0.2  Score=41.60  Aligned_cols=31  Identities=23%  Similarity=0.233  Sum_probs=26.5

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvi   67 (163)
                      .+|.|.|++|.+|+.+++.+.+ .+.++++..
T Consensus         6 k~vlVtG~~G~IG~~l~~~L~~-~G~~V~~~~   36 (325)
T PLN02989          6 KVVCVTGASGYIASWIVKLLLF-RGYTINATV   36 (325)
T ss_pred             CEEEEECCchHHHHHHHHHHHH-CCCEEEEEE
Confidence            5899999999999999999874 588887654

>PLN00106 malate dehydrogenase

Probab=94.39  E-value=0.31  Score=41.92  Aligned_cols=44  Identities=18%  Similarity=0.230  Sum_probs=31.9

Q ss_pred             eccCCCCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216           26 SCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (163)
Q Consensus        26 ~~~~~~~~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~   69 (163)
                      .|-+.....+.||+|+|++|++|..++-.+...+-..-.-++|.
T Consensus         9 ~~~~~~~~~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di   52 (323)
T PLN00106          9 ACRAKGGAPGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDI   52 (323)
T ss_pred             ccccccCCCCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEec
Confidence            35555556667999999779999999998875554433336774

>PLN02653 GDP-mannose 4,6-dehydratase

Probab=94.34  E-value=0.12  Score=43.45  Aligned_cols=33  Identities=24%  Similarity=0.304  Sum_probs=28.3

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid   68 (163)
                      ..+|.|.|++|.+|+.+++.+.+ .+.+++++..
T Consensus         6 ~~~vlVTGatGfiG~~l~~~L~~-~G~~V~~~~r   38 (340)
T PLN02653          6 RKVALITGITGQDGSYLTEFLLS-KGYEVHGIIR   38 (340)
T ss_pred             CCEEEEECCCCccHHHHHHHHHH-CCCEEEEEec
Confidence            46899999999999999999985 5899887654

>PRK06091 membrane protein FdrA; Validated

Probab=94.30  E-value=0.57  Score=43.26  Aligned_cols=96  Identities=16%  Similarity=0.117  Sum_probs=61.0

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT  114 (163)
                      +=+|++++.||.++..+...+. ..++-+.-++..-  |+|+.+-.+     ++    ++.++++.+.+++..++|+-+.
T Consensus       193 ~G~IgiVSQSGtl~~~v~~~a~-~~GiG~S~~Vs~G--n~Dls~~~g-----gi----~~~D~L~~L~~DP~TkvIvly~  260 (555)
T PRK06091        193 EGNIGVIGASGTGIQELCSQIA-LAGEGITHAIGLG--GRDLSAEVG-----GI----SALTALEMLSADEKSEVIAFVS  260 (555)
T ss_pred             CCCEEEEeCcHHHHHHHHHHHH-HcCCCeEEEEECC--CCccccccC-----CC----CHHHHHHHHhhCCCCcEEEEEE
Confidence            5679999999999999888776 5677666666531  122211110     11    3344444444468888888777


Q ss_pred             Cc--hhH-HHHHHHHHHcCCcEEEeCCCCCH
Q 031216          115 DA--STV-YDNVKQATAFGMRSVVYVPHIQL  142 (163)
Q Consensus       115 ~p--~~~-~~~~~~al~~G~~vVigttg~~~  142 (163)
                      -|  +.. .+.+..+.+.+||||+-+.|-++
T Consensus       261 kppaE~v~~~fl~aar~~~KPVVvlk~Grs~  291 (555)
T PRK06091        261 KPPAEAVRLKIINAMKATGKPVVALFLGYTP  291 (555)
T ss_pred             ecCchHHHHHHHHHHhhCCCCEEEEEecCCc
Confidence            44  344 34555556679999988877654

>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase

Probab=94.28  E-value=0.14  Score=43.27  Aligned_cols=31  Identities=26%  Similarity=0.240  Sum_probs=26.7

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvi   67 (163)
                      .||.|.|++|.+|+.+++.+.+ .+.++++..
T Consensus         5 k~ilItGatG~IG~~l~~~L~~-~G~~V~~~~   35 (349)
T TIGR02622         5 KKVLVTGHTGFKGSWLSLWLLE-LGAEVYGYS   35 (349)
T ss_pred             CEEEEECCCChhHHHHHHHHHH-CCCEEEEEe
Confidence            6899999999999999999984 578887653

Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.

>PLN00203 glutamyl-tRNA reductase

Probab=94.28  E-value=0.14  Score=46.83  Aligned_cols=83  Identities=16%  Similarity=0.252  Sum_probs=48.6

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCc--ceeCCHHHHHhcccccCCccEEEE
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI--PVMSDLTMVLGSISQSKARAVVID  112 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi--~v~~~l~ell~~~~~~~~~DVVID  112 (163)
                      ..||+|+|+ |.||+.+++.+.. .+++=+-+++++.  .++..+........+  ..++++.+++.      ++|+||-
T Consensus       266 ~kkVlVIGA-G~mG~~~a~~L~~-~G~~~V~V~nRs~--era~~La~~~~g~~i~~~~~~dl~~al~------~aDVVIs  335 (519)
T PLN00203        266 SARVLVIGA-GKMGKLLVKHLVS-KGCTKMVVVNRSE--ERVAALREEFPDVEIIYKPLDEMLACAA------EADVVFT  335 (519)
T ss_pred             CCEEEEEeC-HHHHHHHHHHHHh-CCCCeEEEEeCCH--HHHHHHHHHhCCCceEeecHhhHHHHHh------cCCEEEE
Confidence            468999995 9999999999875 5664444566542  222333210001111  12356666664      8999997


Q ss_pred             cc---CchhHHHHHHHHH
Q 031216          113 FT---DASTVYDNVKQAT  127 (163)
Q Consensus       113 fT---~p~~~~~~~~~al  127 (163)
                      +|   .|--..+++..+.
T Consensus       336 AT~s~~pvI~~e~l~~~~  353 (519)
T PLN00203        336 STSSETPLFLKEHVEALP  353 (519)
T ss_pred             ccCCCCCeeCHHHHHHhh
Confidence            76   2322356666554

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=94.27  E-value=0.39  Score=42.45  Aligned_cols=62  Identities=19%  Similarity=0.090  Sum_probs=43.3

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEc
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDf  113 (163)
                      .-.+|||+| +|++|+.+++.+. .=|+++.+ +|+... .   .      ..++....++++++.      ..|+|+..
T Consensus       150 ~gktvGIiG-~G~IG~~vA~~~~-~fGm~V~~-~d~~~~-~---~------~~~~~~~~~l~ell~------~sDiVslh  210 (409)
T PRK11790        150 RGKTLGIVG-YGHIGTQLSVLAE-SLGMRVYF-YDIEDK-L---P------LGNARQVGSLEELLA------QSDVVSLH  210 (409)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHH-HCCCEEEE-ECCCcc-c---c------cCCceecCCHHHHHh------hCCEEEEc
Confidence            347899999 7999999999987 45899875 554211 0   0      112223468999996      89998855


Q ss_pred             c
Q 031216          114 T  114 (163)
Q Consensus       114 T  114 (163)
                      .
T Consensus       211 ~  211 (409)
T PRK11790        211 V  211 (409)
T ss_pred             C
Confidence            4

>PRK06138 short chain dehydrogenase; Provisional

Probab=94.26  E-value=1  Score=35.53  Aligned_cols=32  Identities=31%  Similarity=0.338  Sum_probs=26.9

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid   68 (163)
                      .++.|+|++|.+|+.+++.+.+ .+.+++.+..
T Consensus         6 k~~lItG~sg~iG~~la~~l~~-~G~~v~~~~r   37 (252)
T PRK06138          6 RVAIVTGAGSGIGRATAKLFAR-EGARVVVADR   37 (252)
T ss_pred             cEEEEeCCCchHHHHHHHHHHH-CCCeEEEecC
Confidence            4799999999999999999885 5788776543

>PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO

Probab=94.21  E-value=0.14  Score=39.71  Aligned_cols=87  Identities=13%  Similarity=0.126  Sum_probs=44.9

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEccC
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT~  115 (163)
                      .||+++|| |.=|..++..+--.++ .|..++|...  ...+.++.   ..++||. +++++.+     ..+|.++.+..
T Consensus        69 k~I~~yGA-~~kg~tlln~~g~~~~-~I~~vvD~np--~K~G~~~P---Gt~ipI~-~p~~l~~-----~~pd~vivlaw  135 (160)
T PF08484_consen   69 KRIAGYGA-GAKGNTLLNYFGLDND-LIDYVVDDNP--LKQGKYLP---GTHIPIV-SPEELKE-----RKPDYVIVLAW  135 (160)
T ss_dssp             --EEEE----SHHHHHHHHHT--TT-TS--EEES-G--GGTTEE-T---TT--EEE-EGGG--S-----S--SEEEES-G
T ss_pred             CEEEEECc-chHHHHHHHHhCCCcc-eeEEEEeCCh--hhcCcccC---CCCCeEC-CHHHHhh-----CCCCEEEEcCh
Confidence            67999997 8888888888754344 3777889543  23344442   3467876 6777776     58999886652


Q ss_pred             --chhHHHHHHHHHHcCCcEEE
Q 031216          116 --ASTVYDNVKQATAFGMRSVV  135 (163)
Q Consensus       116 --p~~~~~~~~~al~~G~~vVi  135 (163)
                        .+...+......+.|-.+|+
T Consensus       136 ~y~~EI~~~~~~~~~~gg~fi~  157 (160)
T PF08484_consen  136 NYKDEIIEKLREYLERGGKFIV  157 (160)
T ss_dssp             GGHHHHHHHTHHHHHTT-EEEE
T ss_pred             hhHHHHHHHHHHHHhcCCEEEE
Confidence              23334555667788888776

; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.20  E-value=0.66  Score=40.81  Aligned_cols=88  Identities=16%  Similarity=0.205  Sum_probs=51.3

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCccee-CCHHHHHhcccccCCccEEEEcc
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM-SDLTMVLGSISQSKARAVVIDFT  114 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~-~~l~ell~~~~~~~~~DVVIDfT  114 (163)
                      .||.|+| .|++|...++.+. ..+.++++ .|....-.....+...  ..|+.++ ....+.+.     .++|+|| .|
T Consensus         6 ~~~~v~G-~g~~G~~~a~~l~-~~g~~v~~-~d~~~~~~~~~~l~~~--~~gi~~~~g~~~~~~~-----~~~d~vv-~s   74 (445)
T PRK04308          6 KKILVAG-LGGTGISMIAYLR-KNGAEVAA-YDAELKPERVAQIGKM--FDGLVFYTGRLKDALD-----NGFDILA-LS   74 (445)
T ss_pred             CEEEEEC-CCHHHHHHHHHHH-HCCCEEEE-EeCCCCchhHHHHhhc--cCCcEEEeCCCCHHHH-----hCCCEEE-EC
Confidence            5899999 5999999988876 66888775 5642211111122100  1355554 22222222     3789888 54


Q ss_pred             --CchhHHHHHHHHHHcCCcEEE
Q 031216          115 --DASTVYDNVKQATAFGMRSVV  135 (163)
Q Consensus       115 --~p~~~~~~~~~al~~G~~vVi  135 (163)
                        .|.. .+.++.|.++|++++.
T Consensus        75 pgi~~~-~p~~~~a~~~~i~v~~   96 (445)
T PRK04308         75 PGISER-QPDIEAFKQNGGRVLG   96 (445)
T ss_pred             CCCCCC-CHHHHHHHHcCCcEEE
Confidence              2333 3567777888888764

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=94.19  E-value=0.41  Score=45.16  Aligned_cols=37  Identities=22%  Similarity=0.254  Sum_probs=29.3

Q ss_pred             CCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216           31 PPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (163)
Q Consensus        31 ~~~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~   69 (163)
                      ++....||+|+|+ |.||+.++..+....|++++ ++|.
T Consensus       305 ~~~~i~~v~ViGa-G~mG~giA~~~a~~~G~~V~-l~d~  341 (708)
T PRK11154        305 KPRPVNKVGVLGG-GLMGGGIAYVTATKAGLPVR-IKDI  341 (708)
T ss_pred             CCCcccEEEEECC-chhhHHHHHHHHHHcCCeEE-EEeC
Confidence            3344568999995 99999999987767889888 4674

>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.18  E-value=0.67  Score=40.63  Aligned_cols=84  Identities=21%  Similarity=0.211  Sum_probs=51.9

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeC-C-HHHHHhcccccCCccEEEEc
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS-D-LTMVLGSISQSKARAVVIDF  113 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~-~-l~ell~~~~~~~~~DVVIDf  113 (163)
                      .||.|+| .|+.|...++.+. ..|.++.+ .|....-.....+     +.++.++. . ..+.+      .+.|+|| .
T Consensus         7 ~~i~v~G-~G~sG~s~~~~l~-~~G~~v~~-~D~~~~~~~~~~l-----~~g~~~~~~~~~~~~~------~~~d~vv-~   71 (438)
T PRK03806          7 KKVVIIG-LGLTGLSCVDFFL-ARGVTPRV-IDTRITPPGLDKL-----PENVERHTGSLNDEWL------LAADLIV-A   71 (438)
T ss_pred             CEEEEEe-eCHHHHHHHHHHH-HCCCeEEE-EcCCCCchhHHHH-----hcCCEEEeCCCCHHHh------cCCCEEE-E
Confidence            4799999 6999999998655 67888765 7743210001111     12555542 2 22233      3688877 5


Q ss_pred             cC--chhHHHHHHHHHHcCCcEEE
Q 031216          114 TD--ASTVYDNVKQATAFGMRSVV  135 (163)
Q Consensus       114 T~--p~~~~~~~~~al~~G~~vVi  135 (163)
                      ++  |.. .+.+..|.+.|++++.
T Consensus        72 spgi~~~-~~~~~~a~~~g~~v~~   94 (438)
T PRK03806         72 SPGIALA-HPSLSAAADAGIEIVG   94 (438)
T ss_pred             CCCCCCC-CHHHHHHHHCCCeEEE
Confidence            52  443 5778888999999655

>KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism]

Probab=94.18  E-value=0.34  Score=43.20  Aligned_cols=39  Identities=28%  Similarity=0.474  Sum_probs=31.0

Q ss_pred             CCCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216           30 NPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (163)
Q Consensus        30 ~~~~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~   69 (163)
                      +++-++..|.|+||+|+.|+.+++.+.+ .++.+-+++.+
T Consensus        74 ~~~~~~~~VlVvGatG~vG~~iv~~llk-rgf~vra~VRd  112 (411)
T KOG1203|consen   74 NNSKKPTTVLVVGATGKVGRRIVKILLK-RGFSVRALVRD  112 (411)
T ss_pred             CCCCCCCeEEEecCCCchhHHHHHHHHH-CCCeeeeeccC
Confidence            3444678999999999999999999985 56777766654

>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6

Probab=94.17  E-value=0.32  Score=35.11  Aligned_cols=87  Identities=13%  Similarity=0.164  Sum_probs=46.5

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcc-eeCCHHHHHhcccccCCccEEEEcc
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP-VMSDLTMVLGSISQSKARAVVIDFT  114 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~-v~~~l~ell~~~~~~~~~DVVIDfT  114 (163)
                      |||.|+| +|.=-.+++..+.+++.++=+.+.- .+.|..  .+     ...++ -.+|++++.+ .+.+.++|.|| ..
T Consensus         1 MkVLviG-sGgREHAia~~l~~s~~v~~v~~aP-GN~G~~--~~-----~~~~~~~~~d~~~l~~-~a~~~~idlvv-vG   69 (100)
T PF02844_consen    1 MKVLVIG-SGGREHAIAWKLSQSPSVEEVYVAP-GNPGTA--EL-----GKNVPIDITDPEELAD-FAKENKIDLVV-VG   69 (100)
T ss_dssp             EEEEEEE-SSHHHHHHHHHHTTCTTEEEEEEEE---TTGG--GT-----SEEE-S-TT-HHHHHH-HHHHTTESEEE-ES
T ss_pred             CEEEEEC-CCHHHHHHHHHHhcCCCCCEEEEeC-CCHHHH--hh-----ceecCCCCCCHHHHHH-HHHHcCCCEEE-EC
Confidence            7999999 7844445666677777776554433 122221  11     01111 1356666543 23357899877 44


Q ss_pred             CchhH-HHHHHHHHHcCCcE
Q 031216          115 DASTV-YDNVKQATAFGMRS  133 (163)
Q Consensus       115 ~p~~~-~~~~~~al~~G~~v  133 (163)
                      +.... .-.+....+.|+++
T Consensus        70 PE~pL~~Gl~D~l~~~gi~v   89 (100)
T PF02844_consen   70 PEAPLVAGLADALRAAGIPV   89 (100)
T ss_dssp             SHHHHHTTHHHHHHHTT-CE
T ss_pred             ChHHHHHHHHHHHHHCCCcE
Confidence            33333 35667777889986

3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=94.16  E-value=0.4  Score=38.30  Aligned_cols=34  Identities=21%  Similarity=0.300  Sum_probs=26.9

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~   70 (163)
                      ..||+|+| .|.||..++..+. ..|+.=+-++|.+
T Consensus        21 ~~~V~IvG-~GglGs~ia~~La-~~Gvg~i~lvD~D   54 (200)
T TIGR02354        21 QATVAICG-LGGLGSNVAINLA-RAGIGKLILVDFD   54 (200)
T ss_pred             CCcEEEEC-cCHHHHHHHHHHH-HcCCCEEEEECCC
Confidence            46899999 5999999999987 5688544577843

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>KOG2774 consensus NAD dependent epimerase [General function prediction only]

Probab=94.12  E-value=0.27  Score=41.44  Aligned_cols=125  Identities=22%  Similarity=0.258  Sum_probs=78.4

Q ss_pred             cceeeeccccccc-ccccc-eeeeccCCCCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccC
Q 031216            5 GCQFHCRMHHISQ-NVKAK-RFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDM   82 (163)
Q Consensus         5 ~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~   82 (163)
                      ||-.--|..-||. -|.+. ||-+-|-  +++.-||.|.|+.|..|..+++.+..+=|-+-|-..|...   +...++..
T Consensus        14 g~~~~~R~~~Isp~~v~~~A~FH~~s~--~~~~PrvLITG~LGQLG~~~A~LLR~~yGs~~VILSDI~K---Pp~~V~~~   88 (366)
T KOG2774|consen   14 GCWLPVRRNGISPLPVDPLARFHTISQ--TQKAPRVLITGSLGQLGRGLASLLRYMYGSECVILSDIVK---PPANVTDV   88 (366)
T ss_pred             cccccccccCCCcccCCcccccccccc--cCCCCeEEEecchHHHhHHHHHHHHHHhCCccEehhhccC---Cchhhccc
Confidence            5555555555543 33332 3544433  6677899999999999999999999888888887777321   11122110


Q ss_pred             C--CCCCcceeCCHHHHHhcccccCCccEEEEccC-----------------chhHHHHHHHHHHcCCcEEEeCC
Q 031216           83 E--QPLEIPVMSDLTMVLGSISQSKARAVVIDFTD-----------------ASTVYDNVKQATAFGMRSVVYVP  138 (163)
Q Consensus        83 ~--~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT~-----------------p~~~~~~~~~al~~G~~vVigtt  138 (163)
                      .  --.+|.=|.+++|+...    ..+|-+|.||.                 -+.+...+..|.+++..+.+-.|
T Consensus        89 GPyIy~DILD~K~L~eIVVn----~RIdWL~HfSALLSAvGE~NVpLA~~VNI~GvHNil~vAa~~kL~iFVPST  159 (366)
T KOG2774|consen   89 GPYIYLDILDQKSLEEIVVN----KRIDWLVHFSALLSAVGETNVPLALQVNIRGVHNILQVAAKHKLKVFVPST  159 (366)
T ss_pred             CCchhhhhhccccHHHhhcc----cccceeeeHHHHHHHhcccCCceeeeecchhhhHHHHHHHHcCeeEeeccc
Confidence            0  01123335677887763    78999998861                 12345667778888888776444

>PRK06988 putative formyltransferase; Provisional

Probab=94.11  E-value=0.15  Score=43.56  Aligned_cols=72  Identities=17%  Similarity=0.322  Sum_probs=47.5

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC--CCCc----chhhhccCCCCCCcceeC--CH-----HHHHhcc
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH--SVGE----DIGMVCDMEQPLEIPVMS--DL-----TMVLGSI  101 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~--~~g~----~~~~l~g~~~~~gi~v~~--~l-----~ell~~~  101 (163)
                      |+||++.| ++.+|...++.+.+ .+.++++++...  ..+.    ++.+++   ...+++++.  ++     .+.+.  
T Consensus         2 ~mkIvf~G-s~~~a~~~L~~L~~-~~~~i~~Vvt~~d~~~~~~~~~~v~~~A---~~~gip~~~~~~~~~~~~~~~l~--   74 (312)
T PRK06988          2 KPRAVVFA-YHNVGVRCLQVLLA-RGVDVALVVTHEDNPTENIWFGSVAAVA---AEHGIPVITPADPNDPELRAAVA--   74 (312)
T ss_pred             CcEEEEEe-CcHHHHHHHHHHHh-CCCCEEEEEcCCCCCccCcCCCHHHHHH---HHcCCcEEccccCCCHHHHHHHH--
Confidence            68999999 89999999999875 578999988742  1111    223333   255777753  22     22333  


Q ss_pred             cccCCccEEEEccC
Q 031216          102 SQSKARAVVIDFTD  115 (163)
Q Consensus       102 ~~~~~~DVVIDfT~  115 (163)
                        +..+|++|-+..
T Consensus        75 --~~~~Dliv~~~~   86 (312)
T PRK06988         75 --AAAPDFIFSFYY   86 (312)
T ss_pred             --hcCCCEEEEehh
Confidence              268998876653

>PRK06180 short chain dehydrogenase; Provisional

Probab=94.10  E-value=0.3  Score=39.74  Aligned_cols=32  Identities=28%  Similarity=0.386  Sum_probs=26.9

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvi   67 (163)
                      +.++.|+|++|.+|+.+++.+.+ .|.+++++.
T Consensus         4 ~~~vlVtGasggiG~~la~~l~~-~G~~V~~~~   35 (277)
T PRK06180          4 MKTWLITGVSSGFGRALAQAALA-AGHRVVGTV   35 (277)
T ss_pred             CCEEEEecCCChHHHHHHHHHHh-CcCEEEEEe
Confidence            35799999999999999999874 588977654

>PRK08267 short chain dehydrogenase; Provisional

Probab=94.09  E-value=0.32  Score=38.92  Aligned_cols=31  Identities=29%  Similarity=0.449  Sum_probs=26.1

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEE
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgv   66 (163)
                      |.++.|+|++|.+|+.+++.+.+ .+.+++..
T Consensus         1 mk~vlItGasg~iG~~la~~l~~-~G~~V~~~   31 (260)
T PRK08267          1 MKSIFITGAASGIGRATALLFAA-EGWRVGAY   31 (260)
T ss_pred             CcEEEEeCCCchHHHHHHHHHHH-CCCeEEEE
Confidence            45799999999999999999874 57887754

>PRK08340 glucose-1-dehydrogenase; Provisional

Probab=94.08  E-value=0.36  Score=38.75  Aligned_cols=32  Identities=19%  Similarity=0.351  Sum_probs=26.3

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~   69 (163)
                      +++.|+|++|.+|+.+++.+.+ .+.+++.. ++
T Consensus         1 m~vlItGas~gIG~aia~~l~~-~G~~V~~~-~r   32 (259)
T PRK08340          1 MNVLVTASSRGIGFNVARELLK-KGARVVIS-SR   32 (259)
T ss_pred             CeEEEEcCCcHHHHHHHHHHHH-cCCEEEEE-eC
Confidence            4899999999999999999874 57886644 43

>PRK10538 malonic semialdehyde reductase; Provisional

Probab=94.06  E-value=0.9  Score=36.17  Aligned_cols=30  Identities=20%  Similarity=0.394  Sum_probs=25.7

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEE
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgv   66 (163)
                      ++|.|+|++|++|+.+++.+.+ .|.+++.+
T Consensus         1 ~~vlItGasg~iG~~la~~l~~-~G~~V~~~   30 (248)
T PRK10538          1 MIVLVTGATAGFGECITRRFIQ-QGHKVIAT   30 (248)
T ss_pred             CEEEEECCCchHHHHHHHHHHH-CCCEEEEE
Confidence            4799999999999999999984 58887754

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=94.03  E-value=0.37  Score=45.82  Aligned_cols=36  Identities=17%  Similarity=0.302  Sum_probs=28.7

Q ss_pred             CCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216           31 PPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (163)
Q Consensus        31 ~~~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~   69 (163)
                      ++...-||+|+|+ |.||..++..+. ..|++++ ++|.
T Consensus       331 ~~~~i~~v~ViGa-G~MG~gIA~~~a-~~G~~V~-l~d~  366 (737)
T TIGR02441       331 PQRPVKTLAVLGA-GLMGAGIAQVSV-DKGLKTV-LKDA  366 (737)
T ss_pred             CCCcccEEEEECC-CHhHHHHHHHHH-hCCCcEE-EecC
Confidence            4455568999995 999999998877 5599988 5774

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively

Probab=94.01  E-value=0.53  Score=40.45  Aligned_cols=31  Identities=19%  Similarity=0.297  Sum_probs=25.9

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (163)
Q Consensus        37 rV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~   69 (163)
                      ||+|+| .|..|..+++.+. ..|+.=.-++|.
T Consensus         1 kVLIvG-aGGLGs~vA~~La-~aGVg~ItlvD~   31 (307)
T cd01486           1 KCLLLG-AGTLGCNVARNLL-GWGVRHITFVDS   31 (307)
T ss_pred             CEEEEC-CCHHHHHHHHHHH-HcCCCeEEEECC
Confidence            699999 5999999999997 567877777883

This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=94.00  E-value=0.25  Score=45.71  Aligned_cols=105  Identities=11%  Similarity=0.119  Sum_probs=57.2

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcce-eCCH--HHHHhcccccCCccEEE
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDL--TMVLGSISQSKARAVVI  111 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v-~~~l--~ell~~~~~~~~~DVVI  111 (163)
                      .-+|.|+| .|++|+.+++.+. ..+.+++ ++|++.  +.+..+-    +.|.++ |.|.  .+.+.+ +.-.++|++|
T Consensus       400 ~~~vII~G-~Gr~G~~va~~L~-~~g~~vv-vID~d~--~~v~~~~----~~g~~v~~GDat~~~~L~~-agi~~A~~vv  469 (601)
T PRK03659        400 KPQVIIVG-FGRFGQVIGRLLM-ANKMRIT-VLERDI--SAVNLMR----KYGYKVYYGDATQLELLRA-AGAEKAEAIV  469 (601)
T ss_pred             cCCEEEec-CchHHHHHHHHHH-hCCCCEE-EEECCH--HHHHHHH----hCCCeEEEeeCCCHHHHHh-cCCccCCEEE
Confidence            35899999 6999999999987 5677876 567542  1222221    234443 3332  122221 0124788877


Q ss_pred             EccCc-hhHHHHHHHHHHcC--CcEEEeCCCCCHHHHHHHHHH
Q 031216          112 DFTDA-STVYDNVKQATAFG--MRSVVYVPHIQLETVSALSAF  151 (163)
Q Consensus       112 DfT~p-~~~~~~~~~al~~G--~~vVigttg~~~e~~~~L~~~  151 (163)
                      -.+.- +.....+..+.+..  .+++.  ...++++.++|.++
T Consensus       470 ~~~~d~~~n~~i~~~~r~~~p~~~Iia--Ra~~~~~~~~L~~~  510 (601)
T PRK03659        470 ITCNEPEDTMKIVELCQQHFPHLHILA--RARGRVEAHELLQA  510 (601)
T ss_pred             EEeCCHHHHHHHHHHHHHHCCCCeEEE--EeCCHHHHHHHHhC
Confidence            44432 22234445555443  34433  34556666666654

>KOG4777 consensus Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=93.98  E-value=0.13  Score=43.63  Aligned_cols=39  Identities=15%  Similarity=0.225  Sum_probs=31.1

Q ss_pred             eEE-EEcCCCHHHHHHHHHHHhcCCcEEEEE-EecCCCCcc
Q 031216           37 KVI-INGAVKEIGRAAVIAVTKARGMEVAGA-IDSHSVGED   75 (163)
Q Consensus        37 rV~-VvGa~G~mG~~i~~~i~~~~~~eLvgv-id~~~~g~~   75 (163)
                      |++ |+|++|..|++.+..+..+|.++|.-. ...+..|++
T Consensus         5 k~a~vlGaTGaVGQrFi~lLsdhP~f~ikvLgAS~RSAGK~   45 (361)
T KOG4777|consen    5 KSAPVLGATGAVGQRFISLLSDHPYFSIKVLGASKRSAGKR   45 (361)
T ss_pred             cccceeeccchhHHHHHHHhccCCcceeeeecccccccCCc
Confidence            455 999999999999999999999998866 333445554

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=93.98  E-value=0.24  Score=42.49  Aligned_cols=72  Identities=14%  Similarity=0.178  Sum_probs=41.5

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCc------EEEEEEecC-----CCC--cchhhhccCCCCCCcceeCCHHHHHhc
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGM------EVAGAIDSH-----SVG--EDIGMVCDMEQPLEIPVMSDLTMVLGS  100 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~------eLvgvid~~-----~~g--~~~~~l~g~~~~~gi~v~~~l~ell~~  100 (163)
                      +|.||+|+|++|++|..++-.+....=+      +|+ ++|..     ..|  .|+.+..... ..++.++++..+.+  
T Consensus         1 ~p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~-L~Di~~~~~~a~g~a~Dl~~~~~~~-~~~~~i~~~~~~~~--   76 (322)
T cd01338           1 KPVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQ-LLELPQALKALEGVAMELEDCAFPL-LAEIVITDDPNVAF--   76 (322)
T ss_pred             CCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEE-EEecCCcccccceeehhhhhccccc-cCceEEecCcHHHh--
Confidence            4689999997799999988877632222      554 77852     122  1222211000 11344554444555  


Q ss_pred             ccccCCccEEEEc
Q 031216          101 ISQSKARAVVIDF  113 (163)
Q Consensus       101 ~~~~~~~DVVIDf  113 (163)
                          .+.|+||..
T Consensus        77 ----~daDivvit   85 (322)
T cd01338          77 ----KDADWALLV   85 (322)
T ss_pred             ----CCCCEEEEe
Confidence                489998854

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=93.96  E-value=0.44  Score=33.68  Aligned_cols=101  Identities=23%  Similarity=0.223  Sum_probs=51.5

Q ss_pred             EEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcce-eCCHH--HHHhcccccCCccEEEEcc
Q 031216           38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDLT--MVLGSISQSKARAVVIDFT  114 (163)
Q Consensus        38 V~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v-~~~l~--ell~~~~~~~~~DVVIDfT  114 (163)
                      |.|+| .|++|+.+++.+.+ .+.+++. +|.+.  ....++.    ..++.+ +.|..  +.+.+ ..-.++|.++-.+
T Consensus         1 vvI~G-~g~~~~~i~~~L~~-~~~~vvv-id~d~--~~~~~~~----~~~~~~i~gd~~~~~~l~~-a~i~~a~~vv~~~   70 (116)
T PF02254_consen    1 VVIIG-YGRIGREIAEQLKE-GGIDVVV-IDRDP--ERVEELR----EEGVEVIYGDATDPEVLER-AGIEKADAVVILT   70 (116)
T ss_dssp             EEEES--SHHHHHHHHHHHH-TTSEEEE-EESSH--HHHHHHH----HTTSEEEES-TTSHHHHHH-TTGGCESEEEEES
T ss_pred             eEEEc-CCHHHHHHHHHHHh-CCCEEEE-EECCc--HHHHHHH----hcccccccccchhhhHHhh-cCccccCEEEEcc
Confidence            67999 69999999999987 6667774 55432  1112221    122322 33221  11211 0114788877555


Q ss_pred             CchhH-HHHHHHHHH-cC-CcEEEeCCCCCHHHHHHHHH
Q 031216          115 DASTV-YDNVKQATA-FG-MRSVVYVPHIQLETVSALSA  150 (163)
Q Consensus       115 ~p~~~-~~~~~~al~-~G-~~vVigttg~~~e~~~~L~~  150 (163)
                      ..+.. ...+..+.+ .+ ++++.  ...+++..+.|.+
T Consensus        71 ~~d~~n~~~~~~~r~~~~~~~ii~--~~~~~~~~~~l~~  107 (116)
T PF02254_consen   71 DDDEENLLIALLARELNPDIRIIA--RVNDPENAELLRQ  107 (116)
T ss_dssp             SSHHHHHHHHHHHHHHTTTSEEEE--EESSHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCCCCeEEE--EECCHHHHHHHHH
Confidence            43333 344455544 33 45554  2345666566655

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PLN02686 cinnamoyl-CoA reductase

Probab=93.95  E-value=0.1  Score=44.93  Aligned_cols=36  Identities=28%  Similarity=0.304  Sum_probs=30.4

Q ss_pred             CCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (163)
Q Consensus        33 ~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~   69 (163)
                      ..+.+|.|.|++|.+|+.+++.+. ..+.+++++.++
T Consensus        51 ~~~k~VLVTGatGfIG~~lv~~L~-~~G~~V~~~~r~   86 (367)
T PLN02686         51 AEARLVCVTGGVSFLGLAIVDRLL-RHGYSVRIAVDT   86 (367)
T ss_pred             CCCCEEEEECCchHHHHHHHHHHH-HCCCEEEEEeCC
Confidence            456789999999999999999987 468998876663

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=93.95  E-value=0.59  Score=44.28  Aligned_cols=36  Identities=14%  Similarity=0.194  Sum_probs=28.5

Q ss_pred             CCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216           31 PPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (163)
Q Consensus        31 ~~~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~   69 (163)
                      ++...-||+|+|+ |-||..++..+. ..|++++ ++|.
T Consensus       309 ~~~~i~~v~ViGa-G~mG~gIA~~~a-~~G~~V~-l~d~  344 (714)
T TIGR02437       309 IAKDVKQAAVLGA-GIMGGGIAYQSA-SKGTPIV-MKDI  344 (714)
T ss_pred             CccccceEEEECC-chHHHHHHHHHH-hCCCeEE-EEeC
Confidence            3445568999995 999999999887 5699888 5674

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=93.89  E-value=0.54  Score=38.23  Aligned_cols=31  Identities=26%  Similarity=0.404  Sum_probs=27.1

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031216           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (163)
Q Consensus        37 rV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid   68 (163)
                      +|.|+|++|.+|+.+++.+.+. +.++.++..
T Consensus         2 ~ILVtG~tGfiG~~l~~~L~~~-g~~V~~~~r   32 (314)
T COG0451           2 RILVTGGAGFIGSHLVERLLAA-GHDVRGLDR   32 (314)
T ss_pred             eEEEEcCcccHHHHHHHHHHhC-CCeEEEEeC
Confidence            4999999999999999999855 899997665

>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p

Probab=93.88  E-value=0.53  Score=44.28  Aligned_cols=98  Identities=13%  Similarity=0.196  Sum_probs=59.7

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC----------------C---Ccc----hhhhc-cCCCCC----
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS----------------V---GED----IGMVC-DMEQPL----   86 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~----------------~---g~~----~~~l~-g~~~~~----   86 (163)
                      ..||+|+|| |..|..+++.+. .-|+.=..++|...                .   |+.    +.+.+ .+....    
T Consensus       338 ~~kVLIvGa-GGLGs~VA~~La-~~GVg~ItlVD~D~Ve~SNL~RQ~Lf~~~Dv~~~Gk~KA~aAa~~Lk~InP~v~i~~  415 (664)
T TIGR01381       338 QLKVLLLGA-GTLGCNVARCLI-GWGVRHITFVDNGKVSYSNPVRQSLSNFEDCLLGGRGKAETAQKALKRIFPSIQATG  415 (664)
T ss_pred             cCeEEEECC-cHHHHHHHHHHH-HcCCCeEEEEcCCEECCCccccccccchhhhhhcCCcHHHHHHHHHHHHCCCcEEEE
Confidence            379999995 999999999987 56777777888320                0   111    00000 000000    


Q ss_pred             ---Ccc-----eeC-----------CHHHHHhcccccCCccEEEEccCchhH-HHHHHHHHHcCCcEEEeCCCC
Q 031216           87 ---EIP-----VMS-----------DLTMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVPHI  140 (163)
Q Consensus        87 ---gi~-----v~~-----------~l~ell~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigttg~  140 (163)
                         .+|     +..           ++++++.      ..|+|+|++..-.. .-.-..|.++|+++|.+.-|+
T Consensus       416 ~~~~Ipm~Gh~i~~~~~~~~~~d~~~l~~Li~------~~DvV~d~tDn~esR~L~n~~c~~~~kplI~aAlGf  483 (664)
T TIGR01381       416 HRLTVPMPGHPIDEKDVPELEKDIARLEQLIK------DHDVVFLLLDSREARWLPTVLCSRHKKIAISAALGF  483 (664)
T ss_pred             eeeeeccccccCCchhhhhccccHHHHHHHHh------hCCEEEECCCCHHHHHHHHHHHHHhCCCEEEEEecc
Confidence               010     111           2445554      89999999954444 445578899999999775555

This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.

>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]

Probab=93.86  E-value=0.25  Score=42.97  Aligned_cols=93  Identities=17%  Similarity=0.233  Sum_probs=59.6

Q ss_pred             EEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC-----Cc-chhhhccCC-----------------CCCC--ccee-
Q 031216           38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-----GE-DIGMVCDME-----------------QPLE--IPVM-   91 (163)
Q Consensus        38 V~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~-----g~-~~~~l~g~~-----------------~~~g--i~v~-   91 (163)
                      |.|+|+ |..|+-++.++. ..|++=.-++|-+..     .+ ..+.+.+..                 ...+  ...| 
T Consensus        77 VVVVG~-GgVGSwv~nmL~-RSG~qKi~iVDfdqVSlsSLNrHs~Atl~DVG~PK~~clkkh~skiaPw~eIdar~~l~~  154 (430)
T KOG2018|consen   77 VVVVGA-GGVGSWVANMLL-RSGVQKIRIVDFDQVSLSSLNRHSCATLADVGTPKVMCLKKHFSKIAPWCEIDARNMLWT  154 (430)
T ss_pred             EEEEec-CchhHHHHHHHH-HhcCceEEEechhhccHhhhhhhhhhhHhhcCCchHHHHHHHHHhhCccceecHHHhhcC
Confidence            899995 999999999887 578888888883211     00 011111000                 0000  0111 


Q ss_pred             -CCHHHHHhcccccCCccEEEEccC-chhHHHHHHHHHHcCCcEEEeC
Q 031216           92 -SDLTMVLGSISQSKARAVVIDFTD-ASTVYDNVKQATAFGMRSVVYV  137 (163)
Q Consensus        92 -~~l~ell~~~~~~~~~DVVIDfT~-p~~~~~~~~~al~~G~~vVigt  137 (163)
                       ++-++++.     .+||-|+|+-. -+.-.+.+.+|..+|++|+..|
T Consensus       155 ~~s~edll~-----gnPdFvvDciDNidtKVdLL~y~~~~~l~Viss~  197 (430)
T KOG2018|consen  155 SSSEEDLLS-----GNPDFVVDCIDNIDTKVDLLEYCYNHGLKVISST  197 (430)
T ss_pred             CCchhhhhc-----CCCCeEeEhhhhhhhhhHHHHHHHHcCCceEecc
Confidence             45566665     47999999874 4555899999999999998644

>PRK07904 short chain dehydrogenase; Provisional

Probab=93.84  E-value=0.2  Score=40.47  Aligned_cols=33  Identities=24%  Similarity=0.165  Sum_probs=27.8

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid   68 (163)
                      .+|.|.|++|++|+.+++.+.+..+.+++....
T Consensus         9 ~~vlItGas~giG~~la~~l~~~gg~~V~~~~r   41 (253)
T PRK07904          9 QTILLLGGTSEIGLAICERYLKNAPARVVLAAL   41 (253)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeC
Confidence            579999999999999999988766688876543

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=93.80  E-value=0.54  Score=43.75  Aligned_cols=104  Identities=16%  Similarity=0.254  Sum_probs=57.8

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCccee-C---CHHHHHhcccccCCccEE
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM-S---DLTMVLGSISQSKARAVV  110 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~-~---~l~ell~~~~~~~~~DVV  110 (163)
                      .-+|.|+| +|++|+.+++.+. ..+.+++ ++|.+.  +++..+-    +.|.+++ .   +.+ .+.+ +.-.++|++
T Consensus       400 ~~~vII~G-~Gr~G~~va~~L~-~~g~~vv-vID~d~--~~v~~~~----~~g~~v~~GDat~~~-~L~~-agi~~A~~v  468 (621)
T PRK03562        400 QPRVIIAG-FGRFGQIVGRLLL-SSGVKMT-VLDHDP--DHIETLR----KFGMKVFYGDATRMD-LLES-AGAAKAEVL  468 (621)
T ss_pred             cCcEEEEe-cChHHHHHHHHHH-hCCCCEE-EEECCH--HHHHHHH----hcCCeEEEEeCCCHH-HHHh-cCCCcCCEE
Confidence            36899999 6999999999987 4677877 457542  1222221    2344443 2   333 2221 012478887


Q ss_pred             EEccC-chhHHHHHHHHHHcC--CcEEEeCCCCCHHHHHHHHHH
Q 031216          111 IDFTD-ASTVYDNVKQATAFG--MRSVVYVPHIQLETVSALSAF  151 (163)
Q Consensus       111 IDfT~-p~~~~~~~~~al~~G--~~vVigttg~~~e~~~~L~~~  151 (163)
                      |-.+. ++.....+..+.+..  .+++.  -..+.+..++|.++
T Consensus       469 vv~~~d~~~n~~i~~~ar~~~p~~~iia--Ra~d~~~~~~L~~~  510 (621)
T PRK03562        469 INAIDDPQTSLQLVELVKEHFPHLQIIA--RARDVDHYIRLRQA  510 (621)
T ss_pred             EEEeCCHHHHHHHHHHHHHhCCCCeEEE--EECCHHHHHHHHHC
Confidence            75553 333344445555543  34443  23556666666665

>PRK09009 C factor cell-cell signaling protein; Provisional

Probab=93.76  E-value=0.2  Score=39.42  Aligned_cols=30  Identities=23%  Similarity=0.378  Sum_probs=24.6

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhc-CCcEEEE
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKA-RGMEVAG   65 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~-~~~eLvg   65 (163)
                      ++|.|+|++|.+|+.+++.+.+. .+..++.
T Consensus         1 ~~vlItGas~gIG~~ia~~l~~~~~~~~v~~   31 (235)
T PRK09009          1 MNILIVGGSGGIGKAMVKQLLERYPDATVHA   31 (235)
T ss_pred             CEEEEECCCChHHHHHHHHHHHhCCCCEEEE
Confidence            48999999999999999998865 3566554

>PRK05884 short chain dehydrogenase; Provisional

Probab=93.72  E-value=0.33  Score=38.47  Aligned_cols=30  Identities=20%  Similarity=0.428  Sum_probs=25.8

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEE
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgv   66 (163)
                      +|+.|.|++|++|+.+++.+. ..+.+++.+
T Consensus         1 m~vlItGas~giG~~ia~~l~-~~g~~v~~~   30 (223)
T PRK05884          1 VEVLVTGGDTDLGRTIAEGFR-NDGHKVTLV   30 (223)
T ss_pred             CeEEEEeCCchHHHHHHHHHH-HCCCEEEEE
Confidence            489999999999999999997 467888765

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=93.71  E-value=1  Score=36.55  Aligned_cols=94  Identities=20%  Similarity=0.241  Sum_probs=51.8

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCccee----CCHHHHHhcccccCCccEEE
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM----SDLTMVLGSISQSKARAVVI  111 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~----~~l~ell~~~~~~~~~DVVI  111 (163)
                      ++++|+| .|++|+.+++.+. ..+.+++.+-+..   ....++...  ..+..++    ++.+.+.+.  .-.++|+++
T Consensus         1 m~iiIiG-~G~vG~~va~~L~-~~g~~Vv~Id~d~---~~~~~~~~~--~~~~~~v~gd~t~~~~L~~a--gi~~aD~vv   71 (225)
T COG0569           1 MKIIIIG-AGRVGRSVARELS-EEGHNVVLIDRDE---ERVEEFLAD--ELDTHVVIGDATDEDVLEEA--GIDDADAVV   71 (225)
T ss_pred             CEEEEEC-CcHHHHHHHHHHH-hCCCceEEEEcCH---HHHHHHhhh--hcceEEEEecCCCHHHHHhc--CCCcCCEEE
Confidence            5899999 5999999999987 5677877654432   112221110  1222222    233222211  014789988


Q ss_pred             EccCchhHHH-HHHHHHH-cCCcEEEeCC
Q 031216          112 DFTDASTVYD-NVKQATA-FGMRSVVYVP  138 (163)
Q Consensus       112 DfT~p~~~~~-~~~~al~-~G~~vVigtt  138 (163)
                      =.|..+.... ....+++ .|++-++.+.
T Consensus        72 a~t~~d~~N~i~~~la~~~~gv~~viar~  100 (225)
T COG0569          72 AATGNDEVNSVLALLALKEFGVPRVIARA  100 (225)
T ss_pred             EeeCCCHHHHHHHHHHHHhcCCCcEEEEe
Confidence            5554434422 2233333 7888887664

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=93.70  E-value=0.7  Score=39.35  Aligned_cols=111  Identities=17%  Similarity=0.130  Sum_probs=59.2

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC------CCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccE
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH------SVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV  109 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~------~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DV  109 (163)
                      +||.|+| .|.||..+.-.+.+.. -.+..+..++      ..|-.+.+..+.. ......+.+.+. +      .++|+
T Consensus         1 mkI~IlG-aGAvG~l~g~~L~~~g-~~V~~~~R~~~~~~l~~~GL~i~~~~~~~-~~~~~~~~~~~~-~------~~~Dl   70 (307)
T COG1893           1 MKILILG-AGAIGSLLGARLAKAG-HDVTLLVRSRRLEALKKKGLRIEDEGGNF-TTPVVAATDAEA-L------GPADL   70 (307)
T ss_pred             CeEEEEC-CcHHHHHHHHHHHhCC-CeEEEEecHHHHHHHHhCCeEEecCCCcc-ccccccccChhh-c------CCCCE
Confidence            5899999 5999999999998666 4444444432      1232222211100 001111222222 2      48999


Q ss_pred             EEEccCchhH---HHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeE
Q 031216          110 VIDFTDASTV---YDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMV  158 (163)
Q Consensus       110 VIDfT~p~~~---~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv  158 (163)
                      ||.++-....   .+.+...+.....|++---|+.-++  .|.+...+..|+
T Consensus        71 viv~vKa~q~~~al~~l~~~~~~~t~vl~lqNG~g~~e--~l~~~~~~~~il  120 (307)
T COG1893          71 VIVTVKAYQLEEALPSLAPLLGPNTVVLFLQNGLGHEE--ELRKILPKETVL  120 (307)
T ss_pred             EEEEeccccHHHHHHHhhhcCCCCcEEEEEeCCCcHHH--HHHHhCCcceEE
Confidence            9977644333   3444444444444555344775443  677776665333

>PLN02306 hydroxypyruvate reductase

Probab=93.65  E-value=0.53  Score=41.45  Aligned_cols=71  Identities=18%  Similarity=0.134  Sum_probs=43.2

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhh---hccC--C----CCCCcceeCCHHHHHhcccccC
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGM---VCDM--E----QPLEIPVMSDLTMVLGSISQSK  105 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~---l~g~--~----~~~gi~v~~~l~ell~~~~~~~  105 (163)
                      -.+|||+| +|++|+.+++.+...=|+++.+ +|+... .+...   ..+.  .    .+.++..+.++++++.      
T Consensus       165 gktvGIiG-~G~IG~~vA~~l~~~fGm~V~~-~d~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~------  235 (386)
T PLN02306        165 GQTVGVIG-AGRIGSAYARMMVEGFKMNLIY-YDLYQS-TRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLR------  235 (386)
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHhcCCCEEEE-ECCCCc-hhhhhhhhhhcccccccccccccccccCCHHHHHh------
Confidence            47899999 7999999999975344888874 564321 01000   0100  0    0011122468999996      


Q ss_pred             CccEEEEcc
Q 031216          106 ARAVVIDFT  114 (163)
Q Consensus       106 ~~DVVIDfT  114 (163)
                      +.|+|+...
T Consensus       236 ~sDiV~lh~  244 (386)
T PLN02306        236 EADVISLHP  244 (386)
T ss_pred             hCCEEEEeC
Confidence            899988654

>PRK07825 short chain dehydrogenase; Provisional

Probab=93.61  E-value=0.97  Score=36.45  Aligned_cols=30  Identities=33%  Similarity=0.355  Sum_probs=25.3

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEE
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgv   66 (163)
                      .++.|+|++|.+|+.+++.+.+ .+..++..
T Consensus         6 ~~ilVtGasggiG~~la~~l~~-~G~~v~~~   35 (273)
T PRK07825          6 KVVAITGGARGIGLATARALAA-LGARVAIG   35 (273)
T ss_pred             CEEEEeCCCchHHHHHHHHHHH-CCCEEEEE
Confidence            5799999999999999999874 58886643

>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]

Probab=93.59  E-value=0.44  Score=41.12  Aligned_cols=84  Identities=15%  Similarity=0.087  Sum_probs=55.9

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT  114 (163)
                      ..+|+|+| +|.=|+.++..+. .+|++++-........++-++      ..|..|+ +++|+..      ..|+|...+
T Consensus        18 gK~iaIIG-YGsQG~ahalNLR-DSGlnViiGlr~g~~s~~kA~------~dGf~V~-~v~ea~k------~ADvim~L~   82 (338)
T COG0059          18 GKKVAIIG-YGSQGHAQALNLR-DSGLNVIIGLRKGSSSWKKAK------EDGFKVY-TVEEAAK------RADVVMILL   82 (338)
T ss_pred             CCeEEEEe-cChHHHHHHhhhh-hcCCcEEEEecCCchhHHHHH------hcCCEee-cHHHHhh------cCCEEEEeC
Confidence            46899999 7999999999886 689998766653221122222      3344444 7888874      899988665


Q ss_pred             Cchh-----HHHHHHHHHHcCCcEE
Q 031216          115 DAST-----VYDNVKQATAFGMRSV  134 (163)
Q Consensus       115 ~p~~-----~~~~~~~al~~G~~vV  134 (163)
                       |+.     ..+.+...++.|..+.
T Consensus        83 -PDe~q~~vy~~~I~p~Lk~G~aL~  106 (338)
T COG0059          83 -PDEQQKEVYEKEIAPNLKEGAALG  106 (338)
T ss_pred             -chhhHHHHHHHHhhhhhcCCceEE
Confidence             433     2346666777777543

>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]

Probab=93.56  E-value=0.19  Score=43.18  Aligned_cols=31  Identities=32%  Similarity=0.564  Sum_probs=26.0

Q ss_pred             EEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 031216           38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (163)
Q Consensus        38 V~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~   70 (163)
                      .+|.||+.++||+.++.+.+ .|++++ ++.|+
T Consensus        52 AVVTGaTDGIGKayA~eLAk-rG~nvv-LIsRt   82 (312)
T KOG1014|consen   52 AVVTGATDGIGKAYARELAK-RGFNVV-LISRT   82 (312)
T ss_pred             EEEECCCCcchHHHHHHHHH-cCCEEE-EEeCC
Confidence            67899999999999999985 899966 55543

>PRK07589 ornithine cyclodeaminase; Validated

Probab=93.56  E-value=0.18  Score=43.87  Aligned_cols=92  Identities=13%  Similarity=0.100  Sum_probs=59.4

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhcc-CCC-CCCcceeCCHHHHHhcccccCCccEEEEc
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCD-MEQ-PLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g-~~~-~~gi~v~~~l~ell~~~~~~~~~DVVIDf  113 (163)
                      -+++|+| +|..++.+++.+...-.++=+-+.++...  ....+.. +.. ...+.+.+++++++.      ..|+|+=+
T Consensus       130 ~~l~iiG-aG~QA~~~l~a~~~vr~i~~V~v~~r~~~--~a~~~~~~~~~~~~~v~~~~~~~~av~------~ADIIvta  200 (346)
T PRK07589        130 RTMALIG-NGAQSEFQALAFKALLGIEEIRLYDIDPA--ATAKLARNLAGPGLRIVACRSVAEAVE------GADIITTV  200 (346)
T ss_pred             cEEEEEC-CcHHHHHHHHHHHHhCCceEEEEEeCCHH--HHHHHHHHHHhcCCcEEEeCCHHHHHh------cCCEEEEe
Confidence            6799999 69999999999888777877778876532  2222211 100 123555789999985      89999955


Q ss_pred             cCchhHHHHH-HHHHHcCCcEE-Ee
Q 031216          114 TDASTVYDNV-KQATAFGMRSV-VY  136 (163)
Q Consensus       114 T~p~~~~~~~-~~al~~G~~vV-ig  136 (163)
                      |+.....+.+ ...++.|.||. ||
T Consensus       201 T~S~~~~Pvl~~~~lkpG~hV~aIG  225 (346)
T PRK07589        201 TADKTNATILTDDMVEPGMHINAVG  225 (346)
T ss_pred             cCCCCCCceecHHHcCCCcEEEecC
Confidence            5322111222 23568899876 44

>PLN02572 UDP-sulfoquinovose synthase

Probab=93.53  E-value=0.13  Score=45.65  Aligned_cols=32  Identities=34%  Similarity=0.420  Sum_probs=27.5

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEE
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgv   66 (163)
                      ++.||.|+|++|.+|+.+++.+.+ .|.+++++
T Consensus        46 ~~k~VLVTGatGfIGs~Lv~~L~~-~G~~V~~~   77 (442)
T PLN02572         46 KKKKVMVIGGDGYCGWATALHLSK-RGYEVAIV   77 (442)
T ss_pred             cCCEEEEECCCcHHHHHHHHHHHH-CCCeEEEE
Confidence            357899999999999999999985 58888764

>PRK06179 short chain dehydrogenase; Provisional

Probab=93.48  E-value=0.19  Score=40.42  Aligned_cols=32  Identities=28%  Similarity=0.447  Sum_probs=26.7

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid   68 (163)
                      .+|.|+|++|.+|+.+++.+.+ .+.+++....
T Consensus         5 ~~vlVtGasg~iG~~~a~~l~~-~g~~V~~~~r   36 (270)
T PRK06179          5 KVALVTGASSGIGRATAEKLAR-AGYRVFGTSR   36 (270)
T ss_pred             CEEEEecCCCHHHHHHHHHHHH-CCCEEEEEeC
Confidence            4699999999999999999875 5888776543

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=93.43  E-value=0.19  Score=42.39  Aligned_cols=31  Identities=26%  Similarity=0.357  Sum_probs=23.8

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCc-EEEEEEec
Q 031216           37 KVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDS   69 (163)
Q Consensus        37 rV~VvGa~G~mG~~i~~~i~~~~~~-eLvgvid~   69 (163)
                      ||+|+| +|.+|+.++..+....-. +|+ ++|+
T Consensus         2 kI~IIG-aG~vG~~~a~~l~~~g~~~ei~-l~D~   33 (306)
T cd05291           2 KVVIIG-AGHVGSSFAYSLVNQGIADELV-LIDI   33 (306)
T ss_pred             EEEEEC-CCHHHHHHHHHHHhcCCCCEEE-EEeC
Confidence            899999 599999999988754433 554 6775

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=93.41  E-value=0.83  Score=43.59  Aligned_cols=85  Identities=19%  Similarity=0.169  Sum_probs=51.0

Q ss_pred             CeeEEEEcCCCHHHHHH-HHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeC-CHHHHHhcccccCCccEEEE
Q 031216           35 NIKVIINGAVKEIGRAA-VIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS-DLTMVLGSISQSKARAVVID  112 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i-~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~-~l~ell~~~~~~~~~DVVID  112 (163)
                      +.+|.|+| .|+.|... ++.+ ...|.++.+ .|.... ....++.    ..|+.++. ...+.+      ..+|+|| 
T Consensus         4 ~~~i~viG-~G~sG~salA~~L-~~~G~~V~~-sD~~~~-~~~~~L~----~~gi~~~~g~~~~~~------~~~d~vV-   68 (809)
T PRK14573          4 SLFYHFIG-IGGIGMSALAHIL-LDRGYSVSG-SDLSEG-KTVEKLK----AKGARFFLGHQEEHV------PEDAVVV-   68 (809)
T ss_pred             cceEEEEE-ecHHhHHHHHHHH-HHCCCeEEE-ECCCCC-hHHHHHH----HCCCEEeCCCCHHHc------CCCCEEE-
Confidence            34699999 69999987 6655 478999874 674321 1222332    44666652 222334      3789877 


Q ss_pred             cc--CchhHHHHHHHHHHcCCcEEE
Q 031216          113 FT--DASTVYDNVKQATAFGMRSVV  135 (163)
Q Consensus       113 fT--~p~~~~~~~~~al~~G~~vVi  135 (163)
                      .|  .|.. .+.+..|.+.|++++.
T Consensus        69 ~SpgI~~~-~p~~~~a~~~gi~v~~   92 (809)
T PRK14573         69 YSSSISKD-NVEYLSAKSRGNRLVH   92 (809)
T ss_pred             ECCCcCCC-CHHHHHHHHCCCcEEe
Confidence            54  2332 3445667777877654

>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.38  E-value=1.1  Score=40.05  Aligned_cols=84  Identities=11%  Similarity=0.099  Sum_probs=48.4

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEccC
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT~  115 (163)
                      .||+|+| .|+-|+..++.+. . +.+++ +.|....  +...+.... .... .....++.+.      ++|.|| .|+
T Consensus         7 ~~v~v~G-~G~sG~a~~~~L~-~-g~~v~-v~D~~~~--~~~~~~~~~-~~~~-~~~~~~~~~~------~~d~vV-~SP   71 (454)
T PRK01368          7 QKIGVFG-LGKTGISVYEELQ-N-KYDVI-VYDDLKA--NRDIFEELY-SKNA-IAALSDSRWQ------NLDKIV-LSP   71 (454)
T ss_pred             CEEEEEe-ecHHHHHHHHHHh-C-CCEEE-EECCCCC--chHHHHhhh-cCce-eccCChhHhh------CCCEEE-ECC
Confidence            4899999 7999999999987 4 88865 5774321  111111100 0001 1111223343      789877 552


Q ss_pred             --chhHHHHHHHHHHcCCcEEE
Q 031216          116 --ASTVYDNVKQATAFGMRSVV  135 (163)
Q Consensus       116 --p~~~~~~~~~al~~G~~vVi  135 (163)
                        |. ..+.+..+.+.|++++.
T Consensus        72 gI~~-~~p~~~~a~~~gi~v~~   92 (454)
T PRK01368         72 GIPL-THEIVKIAKNFNIPITS   92 (454)
T ss_pred             CCCC-CCHHHHHHHHCCCceec
Confidence              33 23566777788888754

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=93.38  E-value=0.12  Score=40.72  Aligned_cols=32  Identities=22%  Similarity=0.238  Sum_probs=26.5

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid   68 (163)
                      .++.|+|++|.+|+.+++.+.+ .+.+++++..
T Consensus         6 ~~vlItGasg~iG~~l~~~l~~-~G~~V~~~~r   37 (251)
T PRK07231          6 KVAIVTGASSGIGEGIARRFAA-EGARVVVTDR   37 (251)
T ss_pred             cEEEEECCCChHHHHHHHHHHH-CCCEEEEEeC
Confidence            5899999999999999999874 5888665543

>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]

Probab=93.37  E-value=0.58  Score=41.09  Aligned_cols=87  Identities=17%  Similarity=0.183  Sum_probs=58.5

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc-
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT-  114 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT-  114 (163)
                      .-++|+| +|++|+++++.+. .=++.+++.-+...  .+..+      ..|+. +.+++|++.      .+|-+---+ 
T Consensus       147 KTLgvlG-~GrIGseVA~r~k-~~gm~vI~~dpi~~--~~~~~------a~gvq-~vsl~Eil~------~ADFitlH~P  209 (406)
T KOG0068|consen  147 KTLGVLG-LGRIGSEVAVRAK-AMGMHVIGYDPITP--MALAE------AFGVQ-LVSLEEILP------KADFITLHVP  209 (406)
T ss_pred             cEEEEee-cccchHHHHHHHH-hcCceEEeecCCCc--hHHHH------hccce-eeeHHHHHh------hcCEEEEccC
Confidence            4599999 8999999999986 56787776433221  22222      33444 358999995      899766544 


Q ss_pred             -CchhH---HHHHHHHHHcCCcEEEeCCC
Q 031216          115 -DASTV---YDNVKQATAFGMRSVVYVPH  139 (163)
Q Consensus       115 -~p~~~---~~~~~~al~~G~~vVigttg  139 (163)
                       +|+..   .+...+.++.|+.+|--.-|
T Consensus       210 LtP~T~~lin~~tfA~mKkGVriIN~aRG  238 (406)
T KOG0068|consen  210 LTPSTEKLLNDETFAKMKKGVRIINVARG  238 (406)
T ss_pred             CCcchhhccCHHHHHHhhCCcEEEEecCC
Confidence             34432   36667789999998864443

>cd00704 MDH Malate dehydrogenase

Probab=93.37  E-value=0.47  Score=40.69  Aligned_cols=71  Identities=15%  Similarity=0.157  Sum_probs=41.4

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCc------EEEEEEecCC-----CC--cchhhhccCCCCCCcceeCCHHHHHhccc
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGM------EVAGAIDSHS-----VG--EDIGMVCDMEQPLEIPVMSDLTMVLGSIS  102 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~------eLvgvid~~~-----~g--~~~~~l~g~~~~~gi~v~~~l~ell~~~~  102 (163)
                      +||+|+||+|++|..++..+...+-+      +|+ ++|...     .|  .|+.+..... ..+..+..+..+.+.   
T Consensus         1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~-L~Di~~~~~~~~g~~~Dl~d~~~~~-~~~~~i~~~~~~~~~---   75 (323)
T cd00704           1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILH-LLDIPPAMKALEGVVMELQDCAFPL-LKGVVITTDPEEAFK---   75 (323)
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEE-EEecCCccCccceeeeehhhhcccc-cCCcEEecChHHHhC---
Confidence            58999998899999999887754322      244 567432     12  1222221000 112344456666664   


Q ss_pred             ccCCccEEEEcc
Q 031216          103 QSKARAVVIDFT  114 (163)
Q Consensus       103 ~~~~~DVVIDfT  114 (163)
                         .+|+||...
T Consensus        76 ---~aDiVVitA   84 (323)
T cd00704          76 ---DVDVAILVG   84 (323)
T ss_pred             ---CCCEEEEeC
Confidence               899988543

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK06395 phosphoribosylamine--glycine ligase; Provisional

Probab=93.35  E-value=0.84  Score=40.60  Aligned_cols=92  Identities=13%  Similarity=0.090  Sum_probs=52.9

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcce-eCCHHHHHhcccccCCccEEEE
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDLTMVLGSISQSKARAVVID  112 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v-~~~l~ell~~~~~~~~~DVVID  112 (163)
                      +++||.|+| +|.=...++..+.++ +.++..+..+..-|.   ....   ..-+.+ ..|++++++ ++...++|.||-
T Consensus         1 ~~~kVLvlG-~G~re~al~~~l~~~-g~~v~~~~~~~Npg~---~~~a---~~~~~~~~~d~e~l~~-~~~~~~id~Vi~   71 (435)
T PRK06395          1 MTMKVMLVG-SGGREDAIARAIKRS-GAILFSVIGHENPSI---KKLS---KKYLFYDEKDYDLIED-FALKNNVDIVFV   71 (435)
T ss_pred             CceEEEEEC-CcHHHHHHHHHHHhC-CCeEEEEECCCChhh---hhcc---cceeecCCCCHHHHHH-HHHHhCCCEEEE
Confidence            368999999 688778888888765 467776654322111   1110   100111 257766553 344578998884


Q ss_pred             ccCchhHHHHHHHHHHcCCcEE
Q 031216          113 FTDASTVYDNVKQATAFGMRSV  134 (163)
Q Consensus       113 fT~p~~~~~~~~~al~~G~~vV  134 (163)
                      ...+......+....+.|++++
T Consensus        72 ~~d~~l~~~~~~~l~~~Gi~v~   93 (435)
T PRK06395         72 GPDPVLATPLVNNLLKRGIKVA   93 (435)
T ss_pred             CCChHHHHHHHHHHHHCCCcEE
Confidence            3322233445566678898864

>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]

Probab=93.33  E-value=0.2  Score=43.35  Aligned_cols=89  Identities=12%  Similarity=0.032  Sum_probs=59.4

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCC-cchhhhccCCCCCC--cceeCCHHHHHhcccccCCccEEEE
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG-EDIGMVCDMEQPLE--IPVMSDLTMVLGSISQSKARAVVID  112 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g-~~~~~l~g~~~~~g--i~v~~~l~ell~~~~~~~~~DVVID  112 (163)
                      -.++|+| +|.+++.+++.+...-+++=+-+.+++... ++...-+.  ...+  +...+|.++++.      ..|+|+=
T Consensus       131 ~~laiIG-aG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~--~~~~~~v~a~~s~~~av~------~aDiIvt  201 (330)
T COG2423         131 STLAIIG-AGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLR--KRGGEAVGAADSAEEAVE------GADIVVT  201 (330)
T ss_pred             cEEEEEC-CcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHH--hhcCccceeccCHHHHhh------cCCEEEE
Confidence            4699999 699999999999998888888888865321 11111111  1222  445689999985      8999995


Q ss_pred             ccCchhHHHHHHHHHHcCCcEE
Q 031216          113 FTDASTVYDNVKQATAFGMRSV  134 (163)
Q Consensus       113 fT~p~~~~~~~~~al~~G~~vV  134 (163)
                      +| |....-.-...++.|.|+.
T Consensus       202 ~T-~s~~Pil~~~~l~~G~hI~  222 (330)
T COG2423         202 AT-PSTEPVLKAEWLKPGTHIN  222 (330)
T ss_pred             ec-CCCCCeecHhhcCCCcEEE
Confidence            44 4433323345577898876

>PRK06953 short chain dehydrogenase; Provisional

Probab=93.31  E-value=0.64  Score=36.40  Aligned_cols=31  Identities=35%  Similarity=0.410  Sum_probs=26.5

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEE
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgv   66 (163)
                      |.++.|+|++|.+|+.+++.+. ..+.+++.+
T Consensus         1 ~~~vlvtG~sg~iG~~la~~L~-~~G~~v~~~   31 (222)
T PRK06953          1 MKTVLIVGASRGIGREFVRQYR-ADGWRVIAT   31 (222)
T ss_pred             CceEEEEcCCCchhHHHHHHHH-hCCCEEEEE
Confidence            4579999999999999999987 468998765

>COG2403 Predicted GTPase [General function prediction only]

Probab=93.27  E-value=0.46  Score=42.16  Aligned_cols=97  Identities=22%  Similarity=0.280  Sum_probs=63.0

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCC--cchh--hhccCCCCCCcceeC-----CHHHHHhccccc
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG--EDIG--MVCDMEQPLEIPVMS-----DLTMVLGSISQS  104 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g--~~~~--~l~g~~~~~gi~v~~-----~l~ell~~~~~~  104 (163)
                      .+.||.+.|+.|+==...-..+...+.++++++..-...|  .+.+  ++.|...+.|+|++.     ++++++.    +
T Consensus         5 a~kRviiLgaggrdfhv~n~a~r~~~~yevvaf~aaqiiG~~er~yppsleg~~~p~Gvpi~~~k~~~~lek~ir----e   80 (449)
T COG2403           5 ARKRVIILGAGGRDFHVFNVALRDNPEYEVVAFTAAQIIGGTERIYPPSLEGVLYPLGVPILPEKDYDDLEKIIR----E   80 (449)
T ss_pred             CceeEEEEeccCcccchhhHHhccCCcceEEEEEEEEecCCccccCCCCcccccccCCccccccccHHHHHHHHH----H
Confidence            3578899987554333333345678888888877632221  1112  233433477888873     3566666    4


Q ss_pred             CCcc-EEEEcc--CchhHHHHHHHHHHcCCcEE
Q 031216          105 KARA-VVIDFT--DASTVYDNVKQATAFGMRSV  134 (163)
Q Consensus       105 ~~~D-VVIDfT--~p~~~~~~~~~al~~G~~vV  134 (163)
                      ..+| +|+|.|  +|+....++...+..|....
T Consensus        81 ~~VD~~VlaySDvs~e~v~~IaS~vLs~GA~f~  113 (449)
T COG2403          81 KDVDIVVLAYSDVSYEHVFRIASRVLSAGADFK  113 (449)
T ss_pred             cCCCeEEEEcccCCHHHHHHHHHHHHhCCceeE
Confidence            8999 899998  67777888888888886544

>TIGR01759 MalateDH-SF1 malate dehydrogenase

Probab=93.27  E-value=0.44  Score=40.95  Aligned_cols=35  Identities=17%  Similarity=0.357  Sum_probs=26.5

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCc------EEEEEEec
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGM------EVAGAIDS   69 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~------eLvgvid~   69 (163)
                      +|+||+|+|++|.+|..++-.+...+=+      ||+ ++|.
T Consensus         2 ~p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~-L~Di   42 (323)
T TIGR01759         2 KPVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLH-LLDI   42 (323)
T ss_pred             CCeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEE-EEec
Confidence            4799999997799999998887744322      554 6775

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.24  E-value=1.3  Score=39.65  Aligned_cols=85  Identities=21%  Similarity=0.124  Sum_probs=50.8

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC-Cc-chhhhccCCCCCCcceeCC-HHHHHhcccccCCccEEEE
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-GE-DIGMVCDMEQPLEIPVMSD-LTMVLGSISQSKARAVVID  112 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~-g~-~~~~l~g~~~~~gi~v~~~-l~ell~~~~~~~~~DVVID  112 (163)
                      .||+|+| .|+-|+..++.+. ..+.++. +.|.... .. +..++.    ..+..++.. .++.+      .++|.|| 
T Consensus         9 ~~v~v~G-~G~sG~~~~~~l~-~~g~~v~-~~d~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~------~~~d~vV-   74 (468)
T PRK04690          9 RRVALWG-WGREGRAAYRALR-AHLPAQA-LTLFCNAVEAREVGALA----DAALLVETEASAQRL------AAFDVVV-   74 (468)
T ss_pred             CEEEEEc-cchhhHHHHHHHH-HcCCEEE-EEcCCCcccchHHHHHh----hcCEEEeCCCChHHc------cCCCEEE-
Confidence            5899999 6999999999987 5788866 4663211 11 111221    222233322 22334      3789887 


Q ss_pred             ccC--chhHHHHHHHHHHcCCcEEE
Q 031216          113 FTD--ASTVYDNVKQATAFGMRSVV  135 (163)
Q Consensus       113 fT~--p~~~~~~~~~al~~G~~vVi  135 (163)
                      .|+  |. ..+.+..|.+.|++++.
T Consensus        75 ~SpgI~~-~~p~~~~a~~~~i~i~~   98 (468)
T PRK04690         75 KSPGISP-YRPEALAAAARGTPFIG   98 (468)
T ss_pred             ECCCCCC-CCHHHHHHHHcCCcEEE
Confidence            552  43 34567777888888765

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=93.22  E-value=0.63  Score=38.07  Aligned_cols=96  Identities=17%  Similarity=0.238  Sum_probs=48.1

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcE-EEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGME-VAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~e-Lvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT  114 (163)
                      -+|.|+|+ |.+|...++.+. .-+.+ +++ +++...-.+..+-+|..   .+.-+.+..+.+.++.....+|+++|++
T Consensus       122 ~~VlV~G~-G~vG~~~~~~ak-~~G~~~Vi~-~~~~~~r~~~a~~~Ga~---~~i~~~~~~~~~~~~~~~~g~d~vid~~  195 (280)
T TIGR03366       122 RRVLVVGA-GMLGLTAAAAAA-AAGAARVVA-ADPSPDRRELALSFGAT---ALAEPEVLAERQGGLQNGRGVDVALEFS  195 (280)
T ss_pred             CEEEEECC-CHHHHHHHHHHH-HcCCCEEEE-ECCCHHHHHHHHHcCCc---EecCchhhHHHHHHHhCCCCCCEEEECC
Confidence            37999995 999998888765 56876 544 45322111111111210   0111122222221111124699999988


Q ss_pred             CchhHHHHHHHHH-HcCCcEEEeC
Q 031216          115 DASTVYDNVKQAT-AFGMRSVVYV  137 (163)
Q Consensus       115 ~p~~~~~~~~~al-~~G~~vVigt  137 (163)
                      -.....+.+..++ ..|.-+++|.
T Consensus       196 G~~~~~~~~~~~l~~~G~iv~~G~  219 (280)
T TIGR03366       196 GATAAVRACLESLDVGGTAVLAGS  219 (280)
T ss_pred             CChHHHHHHHHHhcCCCEEEEecc
Confidence            4433444444444 4455555664

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>PRK09186 flagellin modification protein A; Provisional

Probab=93.17  E-value=0.53  Score=37.33  Aligned_cols=31  Identities=35%  Similarity=0.324  Sum_probs=26.6

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvi   67 (163)
                      .+|.|+|++|++|+.+++.+.+ .+.+++...
T Consensus         5 k~vlItGas~giG~~~a~~l~~-~g~~v~~~~   35 (256)
T PRK09186          5 KTILITGAGGLIGSALVKAILE-AGGIVIAAD   35 (256)
T ss_pred             CEEEEECCCchHHHHHHHHHHH-CCCEEEEEe
Confidence            5799999999999999999974 688887653

>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase

Probab=93.15  E-value=0.93  Score=40.04  Aligned_cols=83  Identities=19%  Similarity=0.245  Sum_probs=50.0

Q ss_pred             eEEEEcCCCHHHHH-HHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHH-HHHhcccccCCccEEEEcc
Q 031216           37 KVIINGAVKEIGRA-AVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLT-MVLGSISQSKARAVVIDFT  114 (163)
Q Consensus        37 rV~VvGa~G~mG~~-i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~-ell~~~~~~~~~DVVIDfT  114 (163)
                      +|-++| .|+.|.. +++.+. ..|.++. +.|.... .....+.    +.++.++...+ +.+      .++|+|| .|
T Consensus         1 ~~~~iG-iggsGm~~la~~L~-~~G~~v~-~~D~~~~-~~~~~l~----~~gi~~~~g~~~~~~------~~~d~vV-~s   65 (448)
T TIGR01082         1 KIHFVG-IGGIGMSGIAEILL-NRGYQVS-GSDIAEN-ATTKRLE----ALGIPIYIGHSAENL------DDADVVV-VS   65 (448)
T ss_pred             CEEEEE-ECHHHHHHHHHHHH-HCCCeEE-EECCCcc-hHHHHHH----HCcCEEeCCCCHHHC------CCCCEEE-EC
Confidence            478999 5999998 777766 6799976 4774321 1112221    34666653222 233      3689877 44


Q ss_pred             --CchhHHHHHHHHHHcCCcEEE
Q 031216          115 --DASTVYDNVKQATAFGMRSVV  135 (163)
Q Consensus       115 --~p~~~~~~~~~al~~G~~vVi  135 (163)
                        .|.. .+.+..|.+.|++++.
T Consensus        66 pgi~~~-~p~~~~a~~~~i~v~~   87 (448)
T TIGR01082        66 AAIKDD-NPEIVEAKERGIPVIR   87 (448)
T ss_pred             CCCCCC-CHHHHHHHHcCCceEe
Confidence              2332 3456667788888764

UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.

>TIGR03013 EpsB_2 sugar transferase, PEP-CTERM system associated

Probab=93.14  E-value=0.58  Score=41.46  Aligned_cols=85  Identities=12%  Similarity=0.095  Sum_probs=55.0

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhc--CCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHH---HHhcccccCCccEE
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTM---VLGSISQSKARAVV  110 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~--~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~e---ll~~~~~~~~~DVV  110 (163)
                      -|+.|+| .|.-|..+.+...++  .+++++|.++.+...   ..      -.+++++.+.++   .+.    +.++|-|
T Consensus       125 rrvLIIG-ag~~~~~L~~l~~~~~~~g~~vVGfi~~dd~~---~~------i~gvpVlG~~~dl~~~v~----~~~Id~V  190 (442)
T TIGR03013       125 RRILVLG-TGPRAREIARLRRSSDRRGHEIVGFVPLPDEP---AY------VPSEHVIENGDGLVEYVL----RHRIDEI  190 (442)
T ss_pred             CcEEEEE-CCHHHHHHHHHHHhCccCCeEEEEEEcCCccc---cc------cCCCcccCCHHHHHHHHH----hCCCCEE
Confidence            5799999 599999995554444  368999999532111   11      235677766554   444    3789987


Q ss_pred             EEccCchhH----HHHHHHHHHcCCcEEE
Q 031216          111 IDFTDASTV----YDNVKQATAFGMRSVV  135 (163)
Q Consensus       111 IDfT~p~~~----~~~~~~al~~G~~vVi  135 (163)
                      + .+.|...    .+.+..|.+.|+++.+
T Consensus       191 i-IAlp~~~~~~~~~~l~~~~~~gv~V~i  218 (442)
T TIGR03013       191 V-IALDERRGSLPVDELLECKLSGIEVVD  218 (442)
T ss_pred             E-EECchhhcchHHHHHHHHHhCCCEEEE
Confidence            7 4545433    2346777888988765

Members of this protein family belong to the family of bacterial sugar transferases (pfam02397). Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria (notable exceptions appear to include Magnetococcus sp. MC-1 and Myxococcus xanthus DK 1622 ). These genes are generally found near one or more of the PrsK, PrsR or PrsT genes that have been related to the PEP-CTERM system by phylogenetic profiling methods. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species. These proteins are homologs of the EpsB protien found in Methylobacillus sp. strain 12S, which is also associated with a PEP-CTERM system, but of a distinct type. A name which appears attached to a number of genes (by transitive annotation) in this family is "undecapre

>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=93.13  E-value=0.55  Score=36.78  Aligned_cols=34  Identities=35%  Similarity=0.395  Sum_probs=28.1

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~   69 (163)
                      +.++.|+|++|.+|+.+++.+.+ .+.+++.++++
T Consensus         5 ~~~ilI~Gasg~iG~~la~~l~~-~g~~v~~~~~r   38 (247)
T PRK05565          5 GKVAIVTGASGGIGRAIAELLAK-EGAKVVIAYDI   38 (247)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHH-CCCEEEEEcCC
Confidence            45799999999999999999874 58898766454

>KOG2250 consensus Glutamate/leucine/phenylalanine/valine dehydrogenases [Amino acid transport and metabolism]

Probab=93.12  E-value=1.9  Score=39.30  Aligned_cols=114  Identities=19%  Similarity=0.221  Sum_probs=75.3

Q ss_pred             CCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec-----CCCCcchhhhccCCC-CCCccee----CC-------
Q 031216           31 PPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-----HSVGEDIGMVCDMEQ-PLEIPVM----SD-------   93 (163)
Q Consensus        31 ~~~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~-----~~~g~~~~~l~g~~~-~~gi~v~----~~-------   93 (163)
                      ++.+-.|+.|-| .|+.|...++.+. .++-.++++.|.     .+.|-|..+++.+.. +..+.-+    .+       
T Consensus       247 ~~~kgkr~~i~G-~Gnv~~~aa~~l~-~~G~kvvavsD~~G~l~np~Gid~~eL~~~~~~k~~i~~f~~~~~~~~~~~~~  324 (514)
T KOG2250|consen  247 KGIKGKRVVIQG-FGNVGGHAAKKLS-EKGAKVVAVSDSKGVLINPDGIDIEELLDLADEKKTIKSFDGAKLSYEGYIAG  324 (514)
T ss_pred             CCcCceEEEEeC-CCchHHHHHHHHH-hcCCEEEEEEcCceeEECCCCCCHHHHHHHHHhhccccccccccccCcccccc
Confidence            555668899998 7999997777665 799999999994     345766666554320 1111111    01       


Q ss_pred             -HHHHHhcccccCCccEEEEccCchh-HHHHHHHHHHcCCcEEEeCC--CCCHHHHHHHHHH
Q 031216           94 -LTMVLGSISQSKARAVVIDFTDAST-VYDNVKQATAFGMRSVVYVP--HIQLETVSALSAF  151 (163)
Q Consensus        94 -l~ell~~~~~~~~~DVVIDfT~p~~-~~~~~~~al~~G~~vVigtt--g~~~e~~~~L~~~  151 (163)
                       .-..+.     .++|+.+=+..-.. ..+++......|++.|++-.  +.|+|..+-|++.
T Consensus       325 ~~~~~~v-----~~~DI~vPCA~qn~I~~~nA~~lvak~~~~IvEGAN~ptTpeA~~vlek~  381 (514)
T KOG2250|consen  325 LPPWTLV-----EKCDILVPCATQNEITGENAKALVAKGCKYIVEGANMPTTPEADEVLEKA  381 (514)
T ss_pred             CcchhhH-----hhCcEEeecCccCcccHhhHHHHHhcCCcEEEecCCCCCChhHHHHHHhC
Confidence             113343     48999887654444 47999999999999999877  3466665555543

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=93.12  E-value=0.41  Score=40.05  Aligned_cols=96  Identities=15%  Similarity=0.097  Sum_probs=51.1

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCccee---CCHHHHHhcccccCCccEEEE
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM---SDLTMVLGSISQSKARAVVID  112 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~---~~l~ell~~~~~~~~~DVVID  112 (163)
                      -+|.|.|++|.+|..+++.+. ..|+++++..++...-..+.+.+|.   ..+.-|   .++.+.+.... ...+|+++|
T Consensus       153 ~~VlI~Ga~G~vG~~aiqlAk-~~G~~Vi~~~~~~~~~~~~~~~lGa---~~vi~~~~~~~~~~~i~~~~-~~gvd~v~d  227 (338)
T cd08295         153 ETVFVSAASGAVGQLVGQLAK-LKGCYVVGSAGSDEKVDLLKNKLGF---DDAFNYKEEPDLDAALKRYF-PNGIDIYFD  227 (338)
T ss_pred             CEEEEecCccHHHHHHHHHHH-HcCCEEEEEeCCHHHHHHHHHhcCC---ceeEEcCCcccHHHHHHHhC-CCCcEEEEE
Confidence            479999999999999888665 6788877665432110111110221   111112   13433332211 146899999


Q ss_pred             ccCchhHHHHHHHHHH-cCCcEEEeC
Q 031216          113 FTDASTVYDNVKQATA-FGMRSVVYV  137 (163)
Q Consensus       113 fT~p~~~~~~~~~al~-~G~~vVigt  137 (163)
                      +.-... .+.+..+++ .|.-+.+|.
T Consensus       228 ~~g~~~-~~~~~~~l~~~G~iv~~G~  252 (338)
T cd08295         228 NVGGKM-LDAVLLNMNLHGRIAACGM  252 (338)
T ss_pred             CCCHHH-HHHHHHHhccCcEEEEecc
Confidence            875433 344444444 444444543

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit

Probab=93.06  E-value=0.42  Score=42.31  Aligned_cols=97  Identities=9%  Similarity=0.057  Sum_probs=51.7

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec---CCCCcchh-hhccCCCCCCcceeCCHHHHHhcccccCCccEE
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS---HSVGEDIG-MVCDMEQPLEIPVMSDLTMVLGSISQSKARAVV  110 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~---~~~g~~~~-~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVV  110 (163)
                      |.||+|+| .|.++..+++.+.++ |++++++...   ...+.... +..-+.......-|.|.+.+++ ++...++|+|
T Consensus         2 ~kkili~g-~g~~~~~~~~aa~~l-G~~vv~~~~~~d~~a~~~~~aD~~~~~~~~~~~~~y~d~~~l~~-~a~~~~id~I   78 (449)
T TIGR00514         2 LDKILIAN-RGEIALRILRACKEL-GIKTVAVHSTADRDALHVLLADEAVCIGPAPSAKSYLNIPNIIS-AAEITGADAI   78 (449)
T ss_pred             cceEEEeC-CCHHHHHHHHHHHHc-CCeEEEEEChhhhcccccccCCEEEEcCCCCchhchhCHHHHHH-HHHHhCCCEE
Confidence            56999999 599999999998854 8999976431   11111111 1000000011123556566553 2334789998


Q ss_pred             EEccCc-hhHHHHHHHHHHcCCcEE
Q 031216          111 IDFTDA-STVYDNVKQATAFGMRSV  134 (163)
Q Consensus       111 IDfT~p-~~~~~~~~~al~~G~~vV  134 (163)
                      +-.... ......+..+.+.|++++
T Consensus        79 ~pg~g~~se~~~~a~~~e~~Gi~~~  103 (449)
T TIGR00514        79 HPGYGFLSENANFAEQCERSGFTFI  103 (449)
T ss_pred             EeCCCccccCHHHHHHHHHCCCcEE
Confidence            732200 111223455666777753

This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.

>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.04  E-value=1.1  Score=39.64  Aligned_cols=84  Identities=23%  Similarity=0.146  Sum_probs=47.0

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEccC
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT~  115 (163)
                      .||.|+| .|+.|...++.+. ..|.++. +.|....  ....+.    ..|+.+...-.+-+      .++|+|| .|+
T Consensus        10 ~~i~viG-~G~~G~~~a~~l~-~~G~~v~-~~D~~~~--~~~~l~----~~g~~~~~~~~~~~------~~~d~vv-~sp   73 (460)
T PRK01390         10 KTVAVFG-LGGSGLATARALV-AGGAEVI-AWDDNPA--SRAKAA----AAGITTADLRTADW------SGFAALV-LSP   73 (460)
T ss_pred             CEEEEEe-ecHhHHHHHHHHH-HCCCEEE-EECCChh--hHHHHH----hcCccccCCChhHH------cCCCEEE-ECC
Confidence            5899999 6999999887776 6688865 4774311  111221    23444332111223      3789887 552


Q ss_pred             --chhH---HHHHHHHHHcCCcEEE
Q 031216          116 --ASTV---YDNVKQATAFGMRSVV  135 (163)
Q Consensus       116 --p~~~---~~~~~~al~~G~~vVi  135 (163)
                        |..+   ...+..+.+.|++++.
T Consensus        74 ~i~~~~~~~~~~v~~a~~~gi~i~~   98 (460)
T PRK01390         74 GVPLTHPKPHWVVDLARAAGVEVIG   98 (460)
T ss_pred             CCCccCCcccHHHHHHHHcCCcEEe
Confidence              3221   1345555666666543

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=93.01  E-value=0.53  Score=40.18  Aligned_cols=70  Identities=20%  Similarity=0.178  Sum_probs=41.9

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC---CC--cchhhhccCCCCCCcceeCCHHHHHhcccccCCccEE
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS---VG--EDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVV  110 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~---~g--~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVV  110 (163)
                      .||+|+|+ |++|..++-.+...+-..=..++|...   .|  .|+.+.........+..+.|+++ +      .++|+|
T Consensus         4 ~Ki~IiGa-G~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~-~------~~adiv   75 (312)
T cd05293           4 NKVTVVGV-GQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSV-T------ANSKVV   75 (312)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHH-h------CCCCEE
Confidence            59999995 999999988877554443344788432   12  22222221110123333478876 4      489998


Q ss_pred             EEc
Q 031216          111 IDF  113 (163)
Q Consensus       111 IDf  113 (163)
                      |.+
T Consensus        76 vit   78 (312)
T cd05293          76 IVT   78 (312)
T ss_pred             EEC
Confidence            864

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK07578 short chain dehydrogenase; Provisional

Probab=92.98  E-value=0.37  Score=37.09  Aligned_cols=30  Identities=40%  Similarity=0.520  Sum_probs=24.7

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvi   67 (163)
                      +++.|+|++|.+|+.+++.+.+.  .+++...
T Consensus         1 ~~vlItGas~giG~~la~~l~~~--~~vi~~~   30 (199)
T PRK07578          1 MKILVIGASGTIGRAVVAELSKR--HEVITAG   30 (199)
T ss_pred             CeEEEEcCCcHHHHHHHHHHHhc--CcEEEEe
Confidence            37999999999999999999865  6666543

>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2

Probab=92.97  E-value=0.3  Score=41.77  Aligned_cols=29  Identities=28%  Similarity=0.517  Sum_probs=24.1

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 031216           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (163)
Q Consensus        37 rV~VvGa~G~mG~~i~~~i~~~~~~eLvgvi   67 (163)
                      ||+|+| .|..|+.+++.+.+ -|++++.+-
T Consensus         1 kililG-~g~~~~~l~~aa~~-~G~~v~~~d   29 (380)
T TIGR01142         1 RVLLLG-SGELGKEVAIEAQR-LGVEVIAVD   29 (380)
T ss_pred             CEEEEC-CCHHHHHHHHHHHH-cCCEEEEEe
Confidence            799999 69999999999875 489877543

This enzyme is an alternative to PurN (TIGR00639)

>cd08293 PTGR2 Prostaglandin reductase

Probab=92.96  E-value=0.43  Score=39.76  Aligned_cols=95  Identities=14%  Similarity=0.075  Sum_probs=50.5

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCc-EEEEEEecCCCCcchhhhccCCCCCCccee--CCHHHHHhcccccCCccEEEE
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSHSVGEDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAVVID  112 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~-eLvgvid~~~~g~~~~~l~g~~~~~gi~v~--~~l~ell~~~~~~~~~DVVID  112 (163)
                      -+|.|.|++|.+|...++.+. .-+. ++++...+......+.+.+|..   .+..+  .++.+.+.++. ...+|+++|
T Consensus       156 ~~VlI~ga~g~vG~~aiqlAk-~~G~~~Vi~~~~s~~~~~~~~~~lGa~---~vi~~~~~~~~~~i~~~~-~~gvd~vid  230 (345)
T cd08293         156 QTMVVSGAAGACGSLAGQIGR-LLGCSRVVGICGSDEKCQLLKSELGFD---AAINYKTDNVAERLRELC-PEGVDVYFD  230 (345)
T ss_pred             CEEEEECCCcHHHHHHHHHHH-HcCCCEEEEEcCCHHHHHHHHHhcCCc---EEEECCCCCHHHHHHHHC-CCCceEEEE
Confidence            479999999999999888765 5687 7776655321101111112211   11111  23433332211 146999999


Q ss_pred             ccCchhHHHHHHHHHHc-CCcEEEe
Q 031216          113 FTDASTVYDNVKQATAF-GMRSVVY  136 (163)
Q Consensus       113 fT~p~~~~~~~~~al~~-G~~vVig  136 (163)
                      ++..... +.+..+++. |.-+.+|
T Consensus       231 ~~g~~~~-~~~~~~l~~~G~iv~~G  254 (345)
T cd08293         231 NVGGEIS-DTVISQMNENSHIILCG  254 (345)
T ss_pred             CCCcHHH-HHHHHHhccCCEEEEEe
Confidence            8754443 444445544 4444455

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>PRK12938 acetyacetyl-CoA reductase; Provisional

Probab=92.94  E-value=1.4  Score=34.67  Aligned_cols=31  Identities=19%  Similarity=0.358  Sum_probs=26.3

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031216           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (163)
Q Consensus        37 rV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid   68 (163)
                      .+.|+|++|.+|+.+++.+.+ .+.+++...+
T Consensus         5 ~~lVtG~s~giG~~~a~~l~~-~G~~vv~~~~   35 (246)
T PRK12938          5 IAYVTGGMGGIGTSICQRLHK-DGFKVVAGCG   35 (246)
T ss_pred             EEEEECCCChHHHHHHHHHHH-cCCEEEEEcC
Confidence            589999999999999999985 5788876554

>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.82  E-value=1.7  Score=39.03  Aligned_cols=88  Identities=14%  Similarity=0.104  Sum_probs=51.1

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCccee-CC-HHHHHhcccccCCccEEEEc
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM-SD-LTMVLGSISQSKARAVVIDF  113 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~-~~-l~ell~~~~~~~~~DVVIDf  113 (163)
                      .||.|+| .|+.|..+++.+. ..|.++. +.|....-.....+...  ..++.++ .+ ..+.+.      .+|+|| .
T Consensus         8 ~~i~v~G-~G~sG~s~a~~L~-~~G~~v~-~~D~~~~~~~~~~L~~~--~~~~~~~~g~~~~~~~~------~~d~vv-~   75 (498)
T PRK02006          8 PMVLVLG-LGESGLAMARWCA-RHGARLR-VADTREAPPNLAALRAE--LPDAEFVGGPFDPALLD------GVDLVA-L   75 (498)
T ss_pred             CEEEEEe-ecHhHHHHHHHHH-HCCCEEE-EEcCCCCchhHHHHHhh--cCCcEEEeCCCchhHhc------CCCEEE-E
Confidence            5799999 6999999888776 6788876 47743211111122110  1133333 22 233443      789877 5


Q ss_pred             c--Cchh---HHHHHHHHHHcCCcEEE
Q 031216          114 T--DAST---VYDNVKQATAFGMRSVV  135 (163)
Q Consensus       114 T--~p~~---~~~~~~~al~~G~~vVi  135 (163)
                      |  .|..   ..+.+..|.+.|++++.
T Consensus        76 sp~I~~~~~~~~~~~~~a~~~~i~v~~  102 (498)
T PRK02006         76 SPGLSPLEAALAPLVAAARERGIPVWG  102 (498)
T ss_pred             CCCCCCcccccCHHHHHHHHCCCcEEE
Confidence            5  2322   13667777888999865

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=92.82  E-value=0.81  Score=38.51  Aligned_cols=95  Identities=16%  Similarity=0.131  Sum_probs=49.6

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCccee--CCHHHHHhcccccCCccEEEEc
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAVVIDF  113 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~--~~l~ell~~~~~~~~~DVVIDf  113 (163)
                      -+|.|.|+ |.+|...++.+. .-+.+-+-++++...-.+...-+|..   .+.-+  .++++....   ...+|++||+
T Consensus       171 ~~VlV~G~-G~vG~~aiqlak-~~G~~~Vi~~~~~~~~~~~a~~lGa~---~vi~~~~~~~~~~~~~---~g~~D~vid~  242 (343)
T PRK09880        171 KRVFVSGV-GPIGCLIVAAVK-TLGAAEIVCADVSPRSLSLAREMGAD---KLVNPQNDDLDHYKAE---KGYFDVSFEV  242 (343)
T ss_pred             CEEEEECC-CHHHHHHHHHHH-HcCCcEEEEEeCCHHHHHHHHHcCCc---EEecCCcccHHHHhcc---CCCCCEEEEC
Confidence            47999995 999999888766 55774333444321111111112210   11111  234444331   1248999999


Q ss_pred             cCchhHHHHHHHHHHc-CCcEEEeCC
Q 031216          114 TDASTVYDNVKQATAF-GMRSVVYVP  138 (163)
Q Consensus       114 T~p~~~~~~~~~al~~-G~~vVigtt  138 (163)
                      +-.....+.+..+++. |+=+.+|.+
T Consensus       243 ~G~~~~~~~~~~~l~~~G~iv~~G~~  268 (343)
T PRK09880        243 SGHPSSINTCLEVTRAKGVMVQVGMG  268 (343)
T ss_pred             CCCHHHHHHHHHHhhcCCEEEEEccC
Confidence            8644444444455555 454556653

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.76  E-value=1.2  Score=39.27  Aligned_cols=84  Identities=18%  Similarity=0.132  Sum_probs=49.2

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC-Cc-ch-hhhccCCCCCCcceeC--CHH-----HHHhcccccCC
Q 031216           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-GE-DI-GMVCDMEQPLEIPVMS--DLT-----MVLGSISQSKA  106 (163)
Q Consensus        37 rV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~-g~-~~-~~l~g~~~~~gi~v~~--~l~-----ell~~~~~~~~  106 (163)
                      ||.|+| .|..|...++.+. ..|.++. +.|.... .. +. ..+.    +.++.++.  +.+     +.+      .+
T Consensus         2 ~v~viG-~G~sG~s~a~~l~-~~G~~V~-~~D~~~~~~~~~~~~~l~----~~gi~~~~g~~~~~~~~~~~~------~~   68 (459)
T PRK02705          2 IAHVIG-LGRSGIAAARLLK-AQGWEVV-VSDRNDSPELLERQQELE----QEGITVKLGKPLELESFQPWL------DQ   68 (459)
T ss_pred             eEEEEc-cCHHHHHHHHHHH-HCCCEEE-EECCCCchhhHHHHHHHH----HcCCEEEECCccchhhhhHHh------hc
Confidence            799999 5999999877776 5788866 5774321 11 11 1121    33555532  121     233      37


Q ss_pred             ccEEEEccC--chhHHHHHHHHHHcCCcEEE
Q 031216          107 RAVVIDFTD--ASTVYDNVKQATAFGMRSVV  135 (163)
Q Consensus       107 ~DVVIDfT~--p~~~~~~~~~al~~G~~vVi  135 (163)
                      +|.|| .|+  |.. .+.+..|.+.|++++.
T Consensus        69 ~d~vv-~s~gi~~~-~~~~~~a~~~~i~v~~   97 (459)
T PRK02705         69 PDLVV-VSPGIPWD-HPTLVELRERGIEVIG   97 (459)
T ss_pred             CCEEE-ECCCCCCC-CHHHHHHHHcCCcEEE
Confidence            89877 442  322 3566667788888753

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=92.74  E-value=0.79  Score=39.37  Aligned_cols=99  Identities=17%  Similarity=0.169  Sum_probs=54.7

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchh-hhccCCCCCCcceeC---CHHHHHhcccccCCccEEEE
Q 031216           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIG-MVCDMEQPLEIPVMS---DLTMVLGSISQSKARAVVID  112 (163)
Q Consensus        37 rV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~-~l~g~~~~~gi~v~~---~l~ell~~~~~~~~~DVVID  112 (163)
                      +|+|+| .|-+|-..+..+. .-+..-+-++|....-.+.. ++.+.    .+.+..   +..+....+.+...+|++||
T Consensus       171 ~V~V~G-aGpIGLla~~~a~-~~Ga~~Viv~d~~~~Rl~~A~~~~g~----~~~~~~~~~~~~~~~~~~t~g~g~D~vie  244 (350)
T COG1063         171 TVVVVG-AGPIGLLAIALAK-LLGASVVIVVDRSPERLELAKEAGGA----DVVVNPSEDDAGAEILELTGGRGADVVIE  244 (350)
T ss_pred             EEEEEC-CCHHHHHHHHHHH-HcCCceEEEeCCCHHHHHHHHHhCCC----eEeecCccccHHHHHHHHhCCCCCCEEEE
Confidence            799999 5999998877665 45555555667432111111 21111    111111   11111111112246999999


Q ss_pred             ccC-chhHHHHHHHHHHcCCcEEEeCCCCC
Q 031216          113 FTD-ASTVYDNVKQATAFGMRSVVYVPHIQ  141 (163)
Q Consensus       113 fT~-p~~~~~~~~~al~~G~~vVigttg~~  141 (163)
                      +|- +....+.+..+...|.-+++|.++-.
T Consensus       245 ~~G~~~~~~~ai~~~r~gG~v~~vGv~~~~  274 (350)
T COG1063         245 AVGSPPALDQALEALRPGGTVVVVGVYGGE  274 (350)
T ss_pred             CCCCHHHHHHHHHHhcCCCEEEEEeccCCc
Confidence            994 44445566666667788889888554

>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=92.71  E-value=0.2  Score=39.99  Aligned_cols=33  Identities=30%  Similarity=0.498  Sum_probs=29.5

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~   69 (163)
                      ++|.|.|++|..|+.+++.+.+. +.++.++..+
T Consensus         1 ~~ilV~GatG~~G~~~~~~L~~~-~~~v~~~~r~   33 (275)
T COG0702           1 MKILVTGATGFVGGAVVRELLAR-GHEVRAAVRN   33 (275)
T ss_pred             CeEEEEecccchHHHHHHHHHhC-CCEEEEEEeC
Confidence            47999999999999999999866 9999988875

>PRK12829 short chain dehydrogenase; Provisional

Probab=92.69  E-value=1  Score=35.82  Aligned_cols=31  Identities=29%  Similarity=0.454  Sum_probs=26.4

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvi   67 (163)
                      .++.|+|++|.+|+.+++.+.+ .+.+++.+.
T Consensus        12 ~~vlItGa~g~iG~~~a~~L~~-~g~~V~~~~   42 (264)
T PRK12829         12 LRVLVTGGASGIGRAIAEAFAE-AGARVHVCD   42 (264)
T ss_pred             CEEEEeCCCCcHHHHHHHHHHH-CCCEEEEEe
Confidence            6899999999999999999974 578876544

>PRK07577 short chain dehydrogenase; Provisional

Probab=92.61  E-value=0.28  Score=38.35  Aligned_cols=32  Identities=31%  Similarity=0.458  Sum_probs=26.8

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid   68 (163)
                      .++.|+|++|.+|+.+++.+. ..+.+++.+..
T Consensus         4 k~vlItG~s~~iG~~ia~~l~-~~G~~v~~~~r   35 (234)
T PRK07577          4 RTVLVTGATKGIGLALSLRLA-NLGHQVIGIAR   35 (234)
T ss_pred             CEEEEECCCCcHHHHHHHHHH-HCCCEEEEEeC
Confidence            469999999999999999987 46888876544

>KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism]

Probab=92.56  E-value=1.8  Score=38.04  Aligned_cols=102  Identities=14%  Similarity=0.237  Sum_probs=58.0

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC-CcchhhhccCCCCCCccee-CCHHHHHhcccc-cCCccEE
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-GEDIGMVCDMEQPLEIPVM-SDLTMVLGSISQ-SKARAVV  110 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~-g~~~~~l~g~~~~~gi~v~-~~l~ell~~~~~-~~~~DVV  110 (163)
                      .+..+.|+|++|..|+.+++++.+.....-+-++|.... -....+..+.. +..+... .|+.+...- .+ -..+ +|
T Consensus         3 ~~~~vlVtGG~GflG~hlv~~L~~~~~~~~irv~D~~~~~~~~~~e~~~~~-~~~v~~~~~D~~~~~~i-~~a~~~~-~V   79 (361)
T KOG1430|consen    3 KKLSVLVTGGSGFLGQHLVQALLENELKLEIRVVDKTPTQSNLPAELTGFR-SGRVTVILGDLLDANSI-SNAFQGA-VV   79 (361)
T ss_pred             cCCEEEEECCccHHHHHHHHHHHhcccccEEEEeccCccccccchhhhccc-CCceeEEecchhhhhhh-hhhccCc-eE
Confidence            467899999999999999999998875666667884321 11111222110 2233332 333221110 00 0133 33


Q ss_pred             EEcc------------------CchhHHHHHHHHHHcCCcEEEeCC
Q 031216          111 IDFT------------------DASTVYDNVKQATAFGMRSVVYVP  138 (163)
Q Consensus       111 IDfT------------------~p~~~~~~~~~al~~G~~vVigtt  138 (163)
                      +.++                  +-.....+++.|.+.|++.+|-|.
T Consensus        80 vh~aa~~~~~~~~~~~~~~~~vNV~gT~nvi~~c~~~~v~~lIYtS  125 (361)
T KOG1430|consen   80 VHCAASPVPDFVENDRDLAMRVNVNGTLNVIEACKELGVKRLIYTS  125 (361)
T ss_pred             EEeccccCccccccchhhheeecchhHHHHHHHHHHhCCCEEEEec
Confidence            3332                  112346788999999999998775

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=92.56  E-value=1.3  Score=34.04  Aligned_cols=80  Identities=18%  Similarity=0.076  Sum_probs=45.7

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcc-eeCCHHHHHhcccccCCccEEEEcc
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP-VMSDLTMVLGSISQSKARAVVIDFT  114 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~-v~~~l~ell~~~~~~~~~DVVIDfT  114 (163)
                      .||.|+|+ |++|...++.+.+ .+.+++ ++++.. ..++.++.      .+. ....+++..-     ...|+||-.|
T Consensus        14 ~~vlVvGG-G~va~rka~~Ll~-~ga~V~-VIsp~~-~~~l~~l~------~i~~~~~~~~~~dl-----~~a~lViaaT   78 (157)
T PRK06719         14 KVVVIIGG-GKIAYRKASGLKD-TGAFVT-VVSPEI-CKEMKELP------YITWKQKTFSNDDI-----KDAHLIYAAT   78 (157)
T ss_pred             CEEEEECC-CHHHHHHHHHHHh-CCCEEE-EEcCcc-CHHHHhcc------CcEEEecccChhcC-----CCceEEEECC
Confidence            68999995 9999999998874 677777 445332 22222211      111 1234443322     4789888777


Q ss_pred             CchhHHHHHHHHHHcC
Q 031216          115 DASTVYDNVKQATAFG  130 (163)
Q Consensus       115 ~p~~~~~~~~~al~~G  130 (163)
                      ..+.....+..+.+.+
T Consensus        79 ~d~e~N~~i~~~a~~~   94 (157)
T PRK06719         79 NQHAVNMMVKQAAHDF   94 (157)
T ss_pred             CCHHHHHHHHHHHHHC
Confidence            5555544333333334

>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=92.54  E-value=0.48  Score=41.96  Aligned_cols=118  Identities=12%  Similarity=0.154  Sum_probs=73.6

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcce--eCCHHHHHhcccccCCccEEEE
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV--MSDLTMVLGSISQSKARAVVID  112 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v--~~~l~ell~~~~~~~~~DVVID  112 (163)
                      +.+|+++| .+-||+.++-.+. ..++.+.+ +.++.  ....+++... ..+.++  ..|++++...+   .+|-+|+-
T Consensus         6 ~~digLiG-LaVMGqnLiLN~~-d~Gf~v~~-yNRT~--skvD~flane-ak~~~i~ga~S~ed~v~kl---k~PR~iil   76 (487)
T KOG2653|consen    6 KADIGLIG-LAVMGQNLILNIA-DKGFTVCA-YNRTT--SKVDEFLANE-AKGTKIIGAYSLEDFVSKL---KKPRVIIL   76 (487)
T ss_pred             ccchhhhh-Hhhhhhhhhhccc-ccCceEEE-eccch--HhHHHHHHHh-hcCCcccCCCCHHHHHHhc---CCCcEEEE
Confidence            46799999 8999999887776 67888774 45432  2334444332 334444  36888887654   46776664


Q ss_pred             cc----CchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeEEcCC
Q 031216          113 FT----DASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVSTGS  162 (163)
Q Consensus       113 fT----~p~~~~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv~tg~  162 (163)
                      .-    +-+...+.+..+++.|=-+|=|--..-++...+-++++ +.|++|.||
T Consensus        77 lvkAG~pVD~~I~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~-k~GilfvG~  129 (487)
T KOG2653|consen   77 LVKAGAPVDQFIEELVPYLEKGDIIIDGGNSEYQDTERRCRELA-KKGILFVGS  129 (487)
T ss_pred             EeeCCCcHHHHHHHHHhhcCCCCEEEeCCcccCcchHHHHHHHH-hcCcEEEec
Confidence            32    33455777888888887666544333233334444444 567777775

>PRK07023 short chain dehydrogenase; Provisional

Probab=92.54  E-value=0.23  Score=39.36  Aligned_cols=32  Identities=22%  Similarity=0.474  Sum_probs=27.6

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvi   67 (163)
                      |+++.|+|++|.+|+.+++.+.+ .+.+++.+.
T Consensus         1 ~~~vlItGasggiG~~ia~~l~~-~G~~v~~~~   32 (243)
T PRK07023          1 AVRAIVTGHSRGLGAALAEQLLQ-PGIAVLGVA   32 (243)
T ss_pred             CceEEEecCCcchHHHHHHHHHh-CCCEEEEEe
Confidence            56899999999999999999875 588987654

>PRK06153 hypothetical protein; Provisional

Probab=92.54  E-value=0.6  Score=41.41  Aligned_cols=93  Identities=20%  Similarity=0.150  Sum_probs=53.9

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC---------CCC----cchhh-------h----ccCCCCCCccee
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH---------SVG----EDIGM-------V----CDMEQPLEIPVM   91 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~---------~~g----~~~~~-------l----~g~~~~~gi~v~   91 (163)
                      .||+|+| +|+.|..++..|.+..--+|+ ++|.+         ..|    .++++       +    ..+  ..++...
T Consensus       177 ~~VaIVG-~GG~GS~Va~~LAR~GVgeI~-LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~~i--n~~I~~~  252 (393)
T PRK06153        177 QRIAIIG-LGGTGSYILDLVAKTPVREIH-LFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYSNM--RRGIVPH  252 (393)
T ss_pred             CcEEEEc-CCccHHHHHHHHHHcCCCEEE-EECCCEecccccccccccCCHhHcCCcchHHHHHHHHHHHh--CCeEEEE
Confidence            6999999 599999999999876544555 67732         111    11111       0    001  1122111


Q ss_pred             -C--CHHHHHhcccccCCccEEEEccCchhH-HHHHHHHHHcCCcEEEe
Q 031216           92 -S--DLTMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVY  136 (163)
Q Consensus        92 -~--~l~ell~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVig  136 (163)
                       .  +.+.+. .   -..+|+|||++..... ......|.+.|+|+|-+
T Consensus       253 ~~~I~~~n~~-~---L~~~DiV~dcvDn~~aR~~ln~~a~~~gIP~Id~  297 (393)
T PRK06153        253 PEYIDEDNVD-E---LDGFTFVFVCVDKGSSRKLIVDYLEALGIPFIDV  297 (393)
T ss_pred             eecCCHHHHH-H---hcCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEe
Confidence             1  212111 1   1478999999855444 34557788899998743

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=92.53  E-value=0.61  Score=38.85  Aligned_cols=87  Identities=13%  Similarity=0.075  Sum_probs=50.7

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEccC
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT~  115 (163)
                      -+++|+| .|.+|...++.+. .-+.+.+.++|...  .+.. .++   ...  +++ .++...     ..+|++||++-
T Consensus       146 ~~vlV~G-~G~vG~~a~q~ak-~~G~~~v~~~~~~~--~rl~-~a~---~~~--~i~-~~~~~~-----~g~Dvvid~~G  209 (308)
T TIGR01202       146 LPDLIVG-HGTLGRLLARLTK-AAGGSPPAVWETNP--RRRD-GAT---GYE--VLD-PEKDPR-----RDYRAIYDASG  209 (308)
T ss_pred             CcEEEEC-CCHHHHHHHHHHH-HcCCceEEEeCCCH--HHHH-hhh---hcc--ccC-hhhccC-----CCCCEEEECCC
Confidence            3699999 5999998887665 56888776676432  1111 111   111  122 122111     47999999986


Q ss_pred             chhH-HHHHHHHHHcCCcEEEeCC
Q 031216          116 ASTV-YDNVKQATAFGMRSVVYVP  138 (163)
Q Consensus       116 p~~~-~~~~~~al~~G~~vVigtt  138 (163)
                      .... ...+......|+-+++|.+
T Consensus       210 ~~~~~~~~~~~l~~~G~iv~~G~~  233 (308)
T TIGR01202       210 DPSLIDTLVRRLAKGGEIVLAGFY  233 (308)
T ss_pred             CHHHHHHHHHhhhcCcEEEEEeec
Confidence            4444 4445555566666667754

>PRK06196 oxidoreductase; Provisional

Probab=92.52  E-value=0.54  Score=39.14  Aligned_cols=32  Identities=19%  Similarity=0.282  Sum_probs=27.0

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid   68 (163)
                      .+|.|.|++|.+|+.+++.+.+ .+.+++.+..
T Consensus        27 k~vlITGasggIG~~~a~~L~~-~G~~Vv~~~R   58 (315)
T PRK06196         27 KTAIVTGGYSGLGLETTRALAQ-AGAHVIVPAR   58 (315)
T ss_pred             CEEEEeCCCchHHHHHHHHHHH-CCCEEEEEeC
Confidence            5799999999999999999874 6888886543

>PF07994 NAD_binding_5: Myo-inositol-1-phosphate synthase; InterPro: IPR002587 1L-myo-Inositol-1-phosphate synthase (5

Probab=92.51  E-value=0.24  Score=42.20  Aligned_cols=42  Identities=17%  Similarity=0.097  Sum_probs=34.6

Q ss_pred             HHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeEEcCC
Q 031216          120 YDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVSTGS  162 (163)
Q Consensus       120 ~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv~tg~  162 (163)
                      .-|+.+|++.|++.|-++|.+..+ .+.+.++|++.++.+.|.
T Consensus       190 ~~YA~AAl~~g~~fvN~tP~~~a~-~P~l~ela~~~gvpi~Gd  231 (295)
T PF07994_consen  190 MLYAYAALEAGVPFVNGTPSNIAD-DPALVELAEEKGVPIAGD  231 (295)
T ss_dssp             HHHHHHHHHTTEEEEE-SSSTTTT-SHHHHHHHHHHTEEEEES
T ss_pred             HHHHHHHHHCCCCeEeccCccccC-CHHHHHHHHHcCCCeecc
Confidence            458889999999999999977643 468999999999998874

5.1.4 from EC) catalyzes the conversion of D-glucose 6-phosphate to 1L-myo-inositol-1-phosphate, the first committed step in the production of all inositol-containing compounds, including phospholipids, either directly or by salvage. The enzyme exists in a cytoplasmic form in a wide range of plants, animals, and fungi. It has also been detected in several bacteria and a chloroplast form is observed in alga and higher plants. Inositol phosphates play an important role in signal transduction. In Saccharomyces cerevisiae (Baker's yeast), the transcriptional regulation of the INO1 gene has been studied in detail [] and its expression is sensitive to the availability of phospholipid precursors as well as growth phase. The regulation of the structural gene encoding 1L-myo-inositol-1-phosphate synthase has also been analyzed at the transcriptional level in the aquatic angiosperm, Spirodela polyrrhiza (Giant duckweed) and the halophyte, Mesembryanthemum crystallinum (Common ice plant) [].; GO: 0004512 inositol-3-phosphate synthase activity, 0006021 inositol biosynthetic process, 0008654 phospholipid biosynthetic process; PDB: 1GR0_A 1P1K_B 1LA2_B 1RM0_B 1P1I_B 1JKF_A 1P1F_A 1P1J_B 1JKI_B 1P1H_A ....

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=92.43  E-value=1.7  Score=36.03  Aligned_cols=95  Identities=16%  Similarity=0.042  Sum_probs=52.0

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCccee---CCHHHHHhcccccCCccEEEE
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM---SDLTMVLGSISQSKARAVVID  112 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~---~~l~ell~~~~~~~~~DVVID  112 (163)
                      -+|.|.|+.|.+|...++.+. ..+.++++...+... .+...-+|.   ..+.-+   +++++.+.... ...+|+++|
T Consensus       140 ~~VLI~ga~g~vG~~aiqlAk-~~G~~Vi~~~~s~~~-~~~~~~lGa---~~vi~~~~~~~~~~~~~~~~-~~gvdvv~d  213 (325)
T TIGR02825       140 ETVMVNAAAGAVGSVVGQIAK-LKGCKVVGAAGSDEK-VAYLKKLGF---DVAFNYKTVKSLEETLKKAS-PDGYDCYFD  213 (325)
T ss_pred             CEEEEeCCccHHHHHHHHHHH-HcCCEEEEEeCCHHH-HHHHHHcCC---CEEEeccccccHHHHHHHhC-CCCeEEEEE
Confidence            479999988999999887765 678888766543211 111111111   011112   23444332110 136899999


Q ss_pred             ccCchhHHHHHHHHHHcCCcE-EEeC
Q 031216          113 FTDASTVYDNVKQATAFGMRS-VVYV  137 (163)
Q Consensus       113 fT~p~~~~~~~~~al~~G~~v-Vigt  137 (163)
                      ++-.... +.+..+++.+=.+ .+|.
T Consensus       214 ~~G~~~~-~~~~~~l~~~G~iv~~G~  238 (325)
T TIGR02825       214 NVGGEFS-NTVIGQMKKFGRIAICGA  238 (325)
T ss_pred             CCCHHHH-HHHHHHhCcCcEEEEecc
Confidence            8755444 5555555555444 4554

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>PRK05442 malate dehydrogenase; Provisional

Probab=92.37  E-value=0.55  Score=40.40  Aligned_cols=71  Identities=13%  Similarity=0.255  Sum_probs=41.1

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcC------CcEEEEEEecC-----CCC--cchhhhc-cCCCCCCcceeCCHHHHHh
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKAR------GMEVAGAIDSH-----SVG--EDIGMVC-DMEQPLEIPVMSDLTMVLG   99 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~------~~eLvgvid~~-----~~g--~~~~~l~-g~~~~~gi~v~~~l~ell~   99 (163)
                      .|.||+|+|++|.+|..++-.+....      ..+|+ ++|..     ..|  .|+.+.. ..  ..++.++.+..+.+ 
T Consensus         3 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~-LiDi~~~~~~~~g~a~Dl~~~~~~~--~~~~~i~~~~y~~~-   78 (326)
T PRK05442          3 APVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQ-LLEIPPALKALEGVVMELDDCAFPL--LAGVVITDDPNVAF-   78 (326)
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEE-EEecCCcccccceeehhhhhhhhhh--cCCcEEecChHHHh-
Confidence            36799999977999999887765322      22555 67742     122  2222222 11  11344554544555 


Q ss_pred             cccccCCccEEEEc
Q 031216          100 SISQSKARAVVIDF  113 (163)
Q Consensus       100 ~~~~~~~~DVVIDf  113 (163)
                           .++|+||..
T Consensus        79 -----~daDiVVit   87 (326)
T PRK05442         79 -----KDADVALLV   87 (326)
T ss_pred             -----CCCCEEEEe
Confidence                 489988854

>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=92.32  E-value=0.65  Score=36.79  Aligned_cols=31  Identities=19%  Similarity=0.274  Sum_probs=26.1

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvi   67 (163)
                      ..+.|+|++|.+|+.+++.+.+ .+.+++.+.
T Consensus         3 k~vlItG~sg~iG~~la~~L~~-~g~~vi~~~   33 (256)
T PRK12745          3 PVALVTGGRRGIGLGIARALAA-AGFDLAIND   33 (256)
T ss_pred             cEEEEeCCCchHHHHHHHHHHH-CCCEEEEEe
Confidence            4589999999999999999985 588887654

>PRK12742 oxidoreductase; Provisional

Probab=92.31  E-value=1.1  Score=35.12  Aligned_cols=32  Identities=28%  Similarity=0.327  Sum_probs=26.4

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid   68 (163)
                      .+|.|.|++|.+|+.+++.+.+ .+.+++....
T Consensus         7 k~vlItGasggIG~~~a~~l~~-~G~~v~~~~~   38 (237)
T PRK12742          7 KKVLVLGGSRGIGAAIVRRFVT-DGANVRFTYA   38 (237)
T ss_pred             CEEEEECCCChHHHHHHHHHHH-CCCEEEEecC
Confidence            5799999999999999999874 5788775433

>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed

Probab=92.29  E-value=0.44  Score=40.45  Aligned_cols=71  Identities=18%  Similarity=0.342  Sum_probs=46.9

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC--CC--c-----chhhhccCCCCCCcceeC--CH-----HHHHh
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS--VG--E-----DIGMVCDMEQPLEIPVMS--DL-----TMVLG   99 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~--~g--~-----~~~~l~g~~~~~gi~v~~--~l-----~ell~   99 (163)
                      |||+++| ++.++...++.+.+. +.++++|+..+.  .|  .     ++.+++   ...++|++.  ++     .+.+.
T Consensus         1 mkIvf~G-~~~~a~~~L~~L~~~-~~~i~~Vvt~~~~~~~r~~~~~~~~v~~~a---~~~~Ip~~~~~~~~~~~~~~~l~   75 (309)
T PRK00005          1 MRIVFMG-TPEFAVPSLKALLES-GHEVVAVVTQPDRPAGRGKKLTPSPVKQLA---LEHGIPVLQPEKLRDPEFLAELA   75 (309)
T ss_pred             CEEEEEC-CCHHHHHHHHHHHHC-CCcEEEEECCCCCCCCCCCCCCCCHHHHHH---HHcCCCEECcCCCCCHHHHHHHH
Confidence            6999999 799999999999854 899999996321  11  1     233443   256777753  21     22333


Q ss_pred             cccccCCccEEEEccC
Q 031216          100 SISQSKARAVVIDFTD  115 (163)
Q Consensus       100 ~~~~~~~~DVVIDfT~  115 (163)
                          +.++|++|-++.
T Consensus        76 ----~~~~Dliv~~~~   87 (309)
T PRK00005         76 ----ALNADVIVVVAY   87 (309)
T ss_pred             ----hcCcCEEEEehh
Confidence                268998876553

>PRK00885 phosphoribosylamine--glycine ligase; Provisional

Probab=92.25  E-value=0.77  Score=40.16  Aligned_cols=89  Identities=13%  Similarity=0.154  Sum_probs=48.4

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcc-eeCCHHHHHhcccccCCccEEEEcc
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP-VMSDLTMVLGSISQSKARAVVIDFT  114 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~-v~~~l~ell~~~~~~~~~DVVIDfT  114 (163)
                      +||+|+| +|.-...++..+.++++...+.+ ++...|.   ....   + .+. -+.|.+++++ +++..++|+|+-.+
T Consensus         1 ~kvliiG-~G~~~~~l~~~l~~~~~~~~i~~-~~~n~g~---~~~~---~-~~~~~~~d~~~l~~-~~~~~~id~vi~~~   70 (420)
T PRK00885          1 MKVLVIG-SGGREHALAWKLAQSPLVEKVYV-APGNAGT---ALLA---E-NVVIDVTDIEALVA-FAKEEGIDLTVVGP   70 (420)
T ss_pred             CEEEEEC-CCHHHHHHHHHHHhCCCCCEEEE-eCCCHHH---Hhhc---c-ccCCCCCCHHHHHH-HHHHhCCCEEEECC
Confidence            6999999 58666668888877777644433 4322121   1110   1 111 1256666543 23346799888333


Q ss_pred             CchhHHHHHHHHHHcCCcEE
Q 031216          115 DASTVYDNVKQATAFGMRSV  134 (163)
Q Consensus       115 ~p~~~~~~~~~al~~G~~vV  134 (163)
                      ........+..+.+.|++++
T Consensus        71 e~~l~~~~~~~l~~~gi~~~   90 (420)
T PRK00885         71 EAPLVAGIVDAFRAAGLPIF   90 (420)
T ss_pred             chHHHHHHHHHHHHCCCcEE
Confidence            22223355556667888864

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=92.22  E-value=0.38  Score=37.49  Aligned_cols=34  Identities=15%  Similarity=0.327  Sum_probs=26.5

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~   69 (163)
                      +..++.|+|++|.+|+.+++.+.+ .+.++..+ ++
T Consensus        27 ~~~~vlVlGgtG~iG~~~a~~l~~-~g~~V~l~-~R   60 (194)
T cd01078          27 KGKTAVVLGGTGPVGQRAAVLLAR-EGARVVLV-GR   60 (194)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHH-CCCEEEEE-cC
Confidence            346899999889999999999875 46677644 44

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PRK05872 short chain dehydrogenase; Provisional

Probab=92.22  E-value=2.2  Score=35.23  Aligned_cols=30  Identities=30%  Similarity=0.432  Sum_probs=25.4

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEE
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgv   66 (163)
                      .++.|+|++|.+|+.+++.+. ..|.+++.+
T Consensus        10 k~vlItGas~gIG~~ia~~l~-~~G~~V~~~   39 (296)
T PRK05872         10 KVVVVTGAARGIGAELARRLH-ARGAKLALV   39 (296)
T ss_pred             CEEEEECCCchHHHHHHHHHH-HCCCEEEEE
Confidence            579999999999999999987 467887644

>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional

Probab=92.21  E-value=0.8  Score=36.80  Aligned_cols=32  Identities=25%  Similarity=0.482  Sum_probs=26.8

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid   68 (163)
                      .++.|+|+++.+|+.+++.+. ..+.+++.+.+
T Consensus         9 k~vlItGas~gIG~~ia~~l~-~~G~~v~~~~~   40 (260)
T PRK08416          9 KTLVISGGTRGIGKAIVYEFA-QSGVNIAFTYN   40 (260)
T ss_pred             CEEEEeCCCchHHHHHHHHHH-HCCCEEEEEcC
Confidence            478999999999999999988 47888876544

>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent

Probab=92.14  E-value=0.31  Score=43.08  Aligned_cols=26  Identities=15%  Similarity=0.326  Sum_probs=21.7

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcC
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKAR   59 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~   59 (163)
                      .++||+|+|++|++|..++-.+....
T Consensus        43 ~p~KV~IIGAaG~VG~~~A~~l~~~~   68 (387)
T TIGR01757        43 KTVNVAVSGAAGMISNHLLFMLASGE   68 (387)
T ss_pred             CCeEEEEECCCcHHHHHHHHHHHhcc
Confidence            37999999977999999988876443

This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.

>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []

Probab=92.12  E-value=0.3  Score=41.52  Aligned_cols=90  Identities=9%  Similarity=0.037  Sum_probs=50.8

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccC-CC-CCCcceeCCHHHHHhcccccCCccEEEEc
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDM-EQ-PLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~-~~-~~gi~v~~~l~ell~~~~~~~~~DVVIDf  113 (163)
                      -+++|+| +|..++.+++.+...-.++=+-+.+++.  ..+.++... .. ...+...+|+++++.      ..|+|+=+
T Consensus       129 ~~l~viG-aG~QA~~~~~a~~~~~~i~~v~v~~r~~--~~~~~~~~~~~~~~~~v~~~~~~~~av~------~aDii~ta  199 (313)
T PF02423_consen  129 RTLGVIG-AGVQARWHLRALAAVRPIKEVRVYSRSP--ERAEAFAARLRDLGVPVVAVDSAEEAVR------GADIIVTA  199 (313)
T ss_dssp             -EEEEE---SHHHHHHHHHHHHHS--SEEEEE-SSH--HHHHHHHHHHHCCCTCEEEESSHHHHHT------TSSEEEE-
T ss_pred             ceEEEEC-CCHHHHHHHHHHHHhCCceEEEEEccCh--hHHHHHHHhhccccccceeccchhhhcc------cCCEEEEc
Confidence            5899999 6999999999998866688888888653  122222211 01 233445789999985      89999955


Q ss_pred             cCchhHHHHH-HHHHHcCCcEE
Q 031216          114 TDASTVYDNV-KQATAFGMRSV  134 (163)
Q Consensus       114 T~p~~~~~~~-~~al~~G~~vV  134 (163)
                      |+.....+.+ ...++.|.||.
T Consensus       200 T~s~~~~P~~~~~~l~~g~hi~  221 (313)
T PF02423_consen  200 TPSTTPAPVFDAEWLKPGTHIN  221 (313)
T ss_dssp             ---SSEEESB-GGGS-TT-EEE
T ss_pred             cCCCCCCccccHHHcCCCcEEE
Confidence            5322200111 23467888876

The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.

>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]

Probab=92.12  E-value=0.4  Score=40.86  Aligned_cols=64  Identities=19%  Similarity=0.217  Sum_probs=41.5

Q ss_pred             EEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc
Q 031216           38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (163)
Q Consensus        38 V~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT  114 (163)
                      |+|.|++|-+|+.+...+. ..|.++.-+..+....   ....    ...+...+.+++...     -.+|+||+.+
T Consensus         1 IliTGgTGlIG~~L~~~L~-~~gh~v~iltR~~~~~---~~~~----~~~v~~~~~~~~~~~-----~~~DavINLA   64 (297)
T COG1090           1 ILITGGTGLIGRALTARLR-KGGHQVTILTRRPPKA---SQNL----HPNVTLWEGLADALT-----LGIDAVINLA   64 (297)
T ss_pred             CeEeccccchhHHHHHHHH-hCCCeEEEEEcCCcch---hhhc----Cccccccchhhhccc-----CCCCEEEECC
Confidence            5789999999999999886 6788998777754311   1111    112222244555543     2699999975

>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=92.12  E-value=3.2  Score=33.05  Aligned_cols=32  Identities=31%  Similarity=0.429  Sum_probs=26.5

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid   68 (163)
                      .++.|+|++|.+|+.+++.+.+ .+.+++.+..
T Consensus         8 k~~lItGas~gIG~~~a~~l~~-~G~~v~~~~~   39 (255)
T PRK06463          8 KVALITGGTRGIGRAIAEAFLR-EGAKVAVLYN   39 (255)
T ss_pred             CEEEEeCCCChHHHHHHHHHHH-CCCEEEEEeC
Confidence            5799999999999999999974 5788775443

>PLN00112 malate dehydrogenase (NADP); Provisional

Probab=92.06  E-value=0.44  Score=42.86  Aligned_cols=71  Identities=13%  Similarity=0.162  Sum_probs=41.8

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhc------CCc--EEEEEEecCC---CC--cchhhhc-cCCCCCCcceeCCHHHHHh
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKA------RGM--EVAGAIDSHS---VG--EDIGMVC-DMEQPLEIPVMSDLTMVLG   99 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~------~~~--eLvgvid~~~---~g--~~~~~l~-g~~~~~gi~v~~~l~ell~   99 (163)
                      +++||+|+|++|.+|..++-.+...      .++  ||+ .+|...   .|  +|+.+-. ..  ...+.+..+..+.+ 
T Consensus        99 ~~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLv-liD~~~~~a~G~amDL~daa~~~--~~~v~i~~~~ye~~-  174 (444)
T PLN00112         99 KLINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLL-GSERSKQALEGVAMELEDSLYPL--LREVSIGIDPYEVF-  174 (444)
T ss_pred             CCeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEE-EEcCCcchhHHHHHHHHHhhhhh--cCceEEecCCHHHh-
Confidence            4799999997799999999887643      134  666 557421   12  2222221 11  11355444434444 


Q ss_pred             cccccCCccEEEEc
Q 031216          100 SISQSKARAVVIDF  113 (163)
Q Consensus       100 ~~~~~~~~DVVIDf  113 (163)
                           .+.|+||..
T Consensus       175 -----kdaDiVVit  183 (444)
T PLN00112        175 -----QDAEWALLI  183 (444)
T ss_pred             -----CcCCEEEEC
Confidence                 489998854

>TIGR00877 purD phosphoribosylamine--glycine ligase

Probab=92.04  E-value=1  Score=39.21  Aligned_cols=91  Identities=12%  Similarity=0.159  Sum_probs=48.4

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcc-eeCCHHHHHhcccccCCccEEEEcc
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP-VMSDLTMVLGSISQSKARAVVIDFT  114 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~-v~~~l~ell~~~~~~~~~DVVIDfT  114 (163)
                      +||+|+| .|.-++.+++.+.+. +..+..++++...|.  .....   ..-+. -+.|.+.+++ +++..++|+++-..
T Consensus         1 ~kiliiG-~G~~~~~l~~~~~~~-~~~~~~~~~~~~~~~--~~~~~---~~~~~~~~~d~~~l~~-~~~~~~id~vi~~~   72 (423)
T TIGR00877         1 MKVLVIG-NGGREHALAWKLAQS-PLVKYVYVAPGNAGT--ARLAK---NKNVAISITDIEALVE-FAKKKKIDLAVIGP   72 (423)
T ss_pred             CEEEEEC-CChHHHHHHHHHHhC-CCccEEEEECCCHHH--hhhcc---cccccCCCCCHHHHHH-HHHHhCCCEEEECC
Confidence            5999999 599999999999875 333333344322121  11100   00111 1256665442 23346888877333


Q ss_pred             CchhHHHHHHHHHHcCCcEE
Q 031216          115 DASTVYDNVKQATAFGMRSV  134 (163)
Q Consensus       115 ~p~~~~~~~~~al~~G~~vV  134 (163)
                      .-......+..+.+.|++++
T Consensus        73 e~~l~~~~~~~l~~~gi~~~   92 (423)
T TIGR00877        73 EAPLVLGLVDALEEAGIPVF   92 (423)
T ss_pred             chHHHHHHHHHHHHCCCeEE
Confidence            21112345566667788753

This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=92.00  E-value=0.47  Score=39.83  Aligned_cols=35  Identities=26%  Similarity=0.229  Sum_probs=26.9

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~   70 (163)
                      +..||.|+| +|.+|+.++..+.. .++.=+-+++++
T Consensus       126 ~~k~vlIlG-aGGaaraia~aL~~-~G~~~I~I~nR~  160 (284)
T PRK12549        126 SLERVVQLG-AGGAGAAVAHALLT-LGVERLTIFDVD  160 (284)
T ss_pred             cCCEEEEEC-CcHHHHHHHHHHHH-cCCCEEEEECCC
Confidence            346899999 59999999999875 566445577764

>PRK12743 oxidoreductase; Provisional

Probab=91.98  E-value=1.5  Score=35.07  Aligned_cols=33  Identities=18%  Similarity=0.373  Sum_probs=27.5

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~   69 (163)
                      -+|.|.|++|.+|+.+++.+.+ .+.+++.+.++
T Consensus         3 k~vlItGas~giG~~~a~~l~~-~G~~V~~~~~~   35 (256)
T PRK12743          3 QVAIVTASDSGIGKACALLLAQ-QGFDIGITWHS   35 (256)
T ss_pred             CEEEEECCCchHHHHHHHHHHH-CCCEEEEEeCC
Confidence            4799999999999999999985 58888765543

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=91.95  E-value=2  Score=36.48  Aligned_cols=69  Identities=9%  Similarity=0.035  Sum_probs=40.2

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhc-----cCCC--CCCcceeCCHHHHHhcccccCCcc
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC-----DMEQ--PLEIPVMSDLTMVLGSISQSKARA  108 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~-----g~~~--~~gi~v~~~l~ell~~~~~~~~~D  108 (163)
                      +||+|+| .|.||..++..+....-.+ +-++|.... ...++..     +...  ...+..++|+++ +      .+.|
T Consensus         2 ~KV~VIG-aG~vG~~iA~~la~~g~~~-VvlvDi~~~-l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~------~~aD   71 (305)
T TIGR01763         2 KKISVIG-AGFVGATTAFRLAEKELAD-LVLLDVVEG-IPQGKALDMYEASPVGGFDTKVTGTNNYAD-T------ANSD   71 (305)
T ss_pred             CEEEEEC-cCHHHHHHHHHHHHcCCCe-EEEEeCCCC-hhHHHHHhhhhhhhccCCCcEEEecCCHHH-h------CCCC
Confidence            5899999 5999999999887543236 556784211 1111111     0000  112344578877 4      3899


Q ss_pred             EEEEcc
Q 031216          109 VVIDFT  114 (163)
Q Consensus       109 VVIDfT  114 (163)
                      +||.+.
T Consensus        72 iVIita   77 (305)
T TIGR01763        72 IVVITA   77 (305)
T ss_pred             EEEEcC
Confidence            988543

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases

Probab=91.94  E-value=0.48  Score=42.02  Aligned_cols=89  Identities=17%  Similarity=0.221  Sum_probs=48.7

Q ss_pred             eeEEEEcCCCHHHHHHHH--HHH---hcCCcEEEEEEecCCC-----Ccchhhhcc-CCCCCCcceeCCHHHHHhccccc
Q 031216           36 IKVIINGAVKEIGRAAVI--AVT---KARGMEVAGAIDSHSV-----GEDIGMVCD-MEQPLEIPVMSDLTMVLGSISQS  104 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~--~i~---~~~~~eLvgvid~~~~-----g~~~~~l~g-~~~~~gi~v~~~l~ell~~~~~~  104 (163)
                      +||+|+|+ |.||....-  .+.   ..++.+|+ ++|....     ..+...... ......+..++|+++++.     
T Consensus         1 ~KIaIIGa-Gs~G~a~a~~~~i~~~~~~~g~eV~-L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~-----   73 (423)
T cd05297           1 IKIAFIGA-GSVVFTKNLVGDLLKTPELSGSTIA-LMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALD-----   73 (423)
T ss_pred             CeEEEECC-ChHHhHHHHHHHHhcCCCCCCCEEE-EECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhc-----
Confidence            58999995 999987433  343   35555665 5775321     111111111 001234556789988885     


Q ss_pred             CCccEEEEccCchhHH---HHHHHHHHcCCc
Q 031216          105 KARAVVIDFTDASTVY---DNVKQATAFGMR  132 (163)
Q Consensus       105 ~~~DVVIDfT~p~~~~---~~~~~al~~G~~  132 (163)
                       .+|+||....+....   ..-+..+++|+-
T Consensus        74 -~AD~Vi~ai~~~~~~~~~~de~i~~K~g~~  103 (423)
T cd05297          74 -GADFVINTIQVGGHEYTETDFEIPEKYGYY  103 (423)
T ss_pred             -CCCEEEEeeEecCccchhhhhhhHHHcCee
Confidence             899999544322221   222345666654

linked to 3D####ucture

>PLN02602 lactate dehydrogenase

Probab=91.90  E-value=0.76  Score=39.95  Aligned_cols=68  Identities=16%  Similarity=0.246  Sum_probs=41.2

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC---CC--cchhhhccCCCCCCccee--CCHHHHHhcccccCCcc
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS---VG--EDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKARA  108 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~---~g--~~~~~l~g~~~~~gi~v~--~~l~ell~~~~~~~~~D  108 (163)
                      .||+|+|+ |++|..++-.+...+-..=..++|...   .|  .|+.+..... . ...++  .++++ +      .++|
T Consensus        38 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~-~-~~~i~~~~dy~~-~------~daD  107 (350)
T PLN02602         38 TKVSVVGV-GNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFL-P-RTKILASTDYAV-T------AGSD  107 (350)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcC-C-CCEEEeCCCHHH-h------CCCC
Confidence            69999995 999999998887554443344788432   12  2333322211 1 13443  46666 3      4899


Q ss_pred             EEEEc
Q 031216          109 VVIDF  113 (163)
Q Consensus       109 VVIDf  113 (163)
                      +||..
T Consensus       108 iVVit  112 (350)
T PLN02602        108 LCIVT  112 (350)
T ss_pred             EEEEC
Confidence            98854

>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=91.86  E-value=0.35  Score=37.70  Aligned_cols=34  Identities=24%  Similarity=0.415  Sum_probs=27.9

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~   69 (163)
                      +.+|.|+|++|.+|+.+++.+. ..+.+++.+.++
T Consensus         6 ~~~vlItGasg~iG~~l~~~l~-~~g~~v~~~~~~   39 (249)
T PRK12825          6 GRVALVTGAARGLGRAIALRLA-RAGADVVVHYRS   39 (249)
T ss_pred             CCEEEEeCCCchHHHHHHHHHH-HCCCeEEEEeCC
Confidence            4689999999999999999987 467787665554

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=91.85  E-value=1.9  Score=35.42  Aligned_cols=68  Identities=18%  Similarity=0.232  Sum_probs=41.1

Q ss_pred             EEEEcCCCHHHHHHHHHHHhcC--C-cEEEEEEecCC---CC--cchhhhccCCCCCCcceeCCHHHHHhcccccCCccE
Q 031216           38 VIINGAVKEIGRAAVIAVTKAR--G-MEVAGAIDSHS---VG--EDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV  109 (163)
Q Consensus        38 V~VvGa~G~mG~~i~~~i~~~~--~-~eLvgvid~~~---~g--~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DV  109 (163)
                      |+|+|+.|.||..++..+...+  . .+|+ ++|...   .+  .++.+.........+..++|+++.+.      ++|+
T Consensus         1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~-L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~------~aDi   73 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLADGSVLLAIELV-LYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFK------DADV   73 (263)
T ss_pred             CEEECCCChHHHHHHHHHHhCCCCcceEEE-EEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhC------CCCE
Confidence            5899976999999999887554  2 3444 678432   11  22222221100124445677777774      8999


Q ss_pred             EEE
Q 031216          110 VID  112 (163)
Q Consensus       110 VID  112 (163)
                      ||.
T Consensus        74 Vv~   76 (263)
T cd00650          74 VII   76 (263)
T ss_pred             EEE
Confidence            885

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>PRK08017 oxidoreductase; Provisional

Probab=91.83  E-value=4.4  Score=31.99  Aligned_cols=30  Identities=33%  Similarity=0.556  Sum_probs=25.4

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 031216           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (163)
Q Consensus        37 rV~VvGa~G~mG~~i~~~i~~~~~~eLvgvi   67 (163)
                      +|.|+|++|.+|+.+++.+.+ .+.+++.+.
T Consensus         4 ~vlVtGasg~IG~~la~~l~~-~g~~v~~~~   33 (256)
T PRK08017          4 SVLITGCSSGIGLEAALELKR-RGYRVLAAC   33 (256)
T ss_pred             EEEEECCCChHHHHHHHHHHH-CCCEEEEEe
Confidence            699999999999999999974 578876543

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=91.79  E-value=0.81  Score=41.70  Aligned_cols=32  Identities=16%  Similarity=0.290  Sum_probs=25.6

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~   70 (163)
                      =+|.|+| +|++|+.+++.+. ..+.+++ ++|.+
T Consensus       418 ~hiiI~G-~G~~G~~la~~L~-~~g~~vv-vId~d  449 (558)
T PRK10669        418 NHALLVG-YGRVGSLLGEKLL-AAGIPLV-VIETS  449 (558)
T ss_pred             CCEEEEC-CChHHHHHHHHHH-HCCCCEE-EEECC
Confidence            5799999 6999999999987 4567776 56753

>TIGR01408 Ube1 ubiquitin-activating enzyme E1

Probab=91.79  E-value=1.1  Score=44.13  Aligned_cols=95  Identities=11%  Similarity=0.134  Sum_probs=58.2

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC-----C-------cchh---------hhccCCCCCCccee-CC
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-----G-------EDIG---------MVCDMEQPLEIPVM-SD   93 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~-----g-------~~~~---------~l~g~~~~~gi~v~-~~   93 (163)
                      -||.|+| +|+.|.++++.+. ..|+.=+.++|....     +       .+++         .+..+.....+.++ .+
T Consensus        25 s~VLIiG-~gGLG~EiaKnL~-laGVg~iti~D~d~v~~sdL~rQf~~~~~dIGk~Kaea~~~~L~eLNp~V~V~~~~~~  102 (1008)
T TIGR01408        25 SNVLISG-MGGLGLEIAKNLV-LAGVKSVTLHDTEKCQAWDLSSNFFLSEDDVGRNRAEAVVKKLAELNPYVHVSSSSVP  102 (1008)
T ss_pred             CcEEEEC-CCHHHHHHHHHHH-HcCCCeEEEEeCCeecHhhCCCceecchHHcCchHHHHHHHHHHHHCCCceEEEeccc
Confidence            6899999 5999999999997 689988888994311     1       0111         00001001112222 23


Q ss_pred             H-HHHHhcccccCCccEEEEccCchhH-HHHHHHHHHcC--CcEEEeCC
Q 031216           94 L-TMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFG--MRSVVYVP  138 (163)
Q Consensus        94 l-~ell~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G--~~vVigtt  138 (163)
                      + ++.+      .++|+||+.+.+-.. ...-..|.++|  +++|.+-+
T Consensus       103 l~~e~l------~~fdvVV~t~~~~~~~~~in~~cr~~~~~I~fI~~~~  145 (1008)
T TIGR01408       103 FNEEFL------DKFQCVVLTEMSLPLQKEINDFCHSQCPPIAFISADV  145 (1008)
T ss_pred             CCHHHH------cCCCEEEECCCCHHHHHHHHHHHHHcCCCeEEEEEee
Confidence            3 3344      389999987654443 56668888888  77776544

This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.

>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases

Probab=91.77  E-value=1  Score=38.59  Aligned_cols=35  Identities=20%  Similarity=0.196  Sum_probs=25.5

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~   70 (163)
                      +||+|+|++|++|..++-.+...+-..=...+|..
T Consensus         1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~   35 (310)
T cd01337           1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV   35 (310)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC
Confidence            59999997799999999887655433333367743

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1

Probab=91.76  E-value=1.8  Score=38.66  Aligned_cols=32  Identities=13%  Similarity=0.188  Sum_probs=27.7

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~   69 (163)
                      -+|.|+| +|.+|.++++.+. .+|+.=.-++|.
T Consensus        21 s~VlliG-~gglGsEilKNLv-L~GIg~~tIvD~   52 (425)
T cd01493          21 AHVCLLN-ATATGTEILKNLV-LPGIGSFTIVDG   52 (425)
T ss_pred             CeEEEEc-CcHHHHHHHHHHH-HcCCCeEEEECC
Confidence            5899999 5999999999987 789977778884

APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.

>TIGR00518 alaDH alanine dehydrogenase

Probab=91.74  E-value=0.46  Score=41.43  Aligned_cols=41  Identities=22%  Similarity=0.174  Sum_probs=29.5

Q ss_pred             ccCCCCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 031216           27 CSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (163)
Q Consensus        27 ~~~~~~~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~   70 (163)
                      ...-+.-.+.||.|+| .|.+|+..++.+... ++++ -++|++
T Consensus       159 ~~~~~~l~~~~VlViG-aG~vG~~aa~~a~~l-Ga~V-~v~d~~  199 (370)
T TIGR00518       159 LGGVPGVEPGDVTIIG-GGVVGTNAAKMANGL-GATV-TILDIN  199 (370)
T ss_pred             ecCCCCCCCceEEEEc-CCHHHHHHHHHHHHC-CCeE-EEEECC
Confidence            3343444567899999 599999999998754 6774 457754

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=91.73  E-value=0.74  Score=39.26  Aligned_cols=68  Identities=19%  Similarity=0.241  Sum_probs=41.2

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCc-EEEEEEecCC---CC--cchhhhccCCCCCCccee-CCHHHHHhcccccCCc
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSHS---VG--EDIGMVCDMEQPLEIPVM-SDLTMVLGSISQSKAR  107 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~-eLvgvid~~~---~g--~~~~~l~g~~~~~gi~v~-~~l~ell~~~~~~~~~  107 (163)
                      ..||+|+|+ |.+|..++-.+...+-. ||+ ++|...   .|  .|+.+.....  ..+.++ +++++ +      .++
T Consensus         6 ~~ki~iiGa-G~vG~~~a~~l~~~~~~~el~-L~D~~~~~~~g~~~Dl~~~~~~~--~~~~i~~~~~~~-~------~~a   74 (315)
T PRK00066          6 HNKVVLVGD-GAVGSSYAYALVNQGIADELV-IIDINKEKAEGDAMDLSHAVPFT--SPTKIYAGDYSD-C------KDA   74 (315)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCCEEE-EEeCCCchhHHHHHHHHhhcccc--CCeEEEeCCHHH-h------CCC
Confidence            469999996 99999999988755544 444 788532   12  2333322111  134444 45544 4      489


Q ss_pred             cEEEEc
Q 031216          108 AVVIDF  113 (163)
Q Consensus       108 DVVIDf  113 (163)
                      |+||..
T Consensus        75 divIit   80 (315)
T PRK00066         75 DLVVIT   80 (315)
T ss_pred             CEEEEe
Confidence            998854

>PRK12828 short chain dehydrogenase; Provisional

Probab=91.71  E-value=2.4  Score=32.88  Aligned_cols=31  Identities=32%  Similarity=0.329  Sum_probs=26.0

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvi   67 (163)
                      .++.|.|++|.+|+.+++.+.+ .+.+++++.
T Consensus         8 k~vlItGatg~iG~~la~~l~~-~G~~v~~~~   38 (239)
T PRK12828          8 KVVAITGGFGGLGRATAAWLAA-RGARVALIG   38 (239)
T ss_pred             CEEEEECCCCcHhHHHHHHHHH-CCCeEEEEe
Confidence            5799999999999999999974 588876544

>cd08230 glucose_DH Glucose dehydrogenase

Probab=91.68  E-value=1  Score=38.05  Aligned_cols=93  Identities=18%  Similarity=0.187  Sum_probs=49.4

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC--CCCcchhhhccCCCCCCccee--CCHHHHHhcccccCCccEEE
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH--SVGEDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAVVI  111 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~--~~g~~~~~l~g~~~~~gi~v~--~~l~ell~~~~~~~~~DVVI  111 (163)
                      -+|+|.|+ |.+|...++.+. ..+.+++++..+.  ....+..+-+|..   .+ .+  .++++...    ...+|+||
T Consensus       174 ~~vlI~G~-G~vG~~a~q~ak-~~G~~vi~~~~~~~~~~~~~~~~~~Ga~---~v-~~~~~~~~~~~~----~~~~d~vi  243 (355)
T cd08230         174 RRALVLGA-GPIGLLAALLLR-LRGFEVYVLNRRDPPDPKADIVEELGAT---YV-NSSKTPVAEVKL----VGEFDLII  243 (355)
T ss_pred             CEEEEECC-CHHHHHHHHHHH-HcCCeEEEEecCCCCHHHHHHHHHcCCE---Ee-cCCccchhhhhh----cCCCCEEE
Confidence            47999995 999999887765 5678877644221  1111111111210   01 11  12222111    14799999


Q ss_pred             EccCchhH-HHHHHHHHHcCCcEEEeCC
Q 031216          112 DFTDASTV-YDNVKQATAFGMRSVVYVP  138 (163)
Q Consensus       112 DfT~p~~~-~~~~~~al~~G~~vVigtt  138 (163)
                      |++-.... ...+......|.-+++|.+
T Consensus       244 d~~g~~~~~~~~~~~l~~~G~~v~~G~~  271 (355)
T cd08230         244 EATGVPPLAFEALPALAPNGVVILFGVP  271 (355)
T ss_pred             ECcCCHHHHHHHHHHccCCcEEEEEecC
Confidence            99864334 4444444455665567764

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>PRK06523 short chain dehydrogenase; Provisional

Probab=91.61  E-value=3.2  Score=32.99  Aligned_cols=31  Identities=26%  Similarity=0.444  Sum_probs=26.7

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvi   67 (163)
                      .++.|.|++|.+|+.+++.+.+ .+.+++.+.
T Consensus        10 k~vlItGas~gIG~~ia~~l~~-~G~~v~~~~   40 (260)
T PRK06523         10 KRALVTGGTKGIGAATVARLLE-AGARVVTTA   40 (260)
T ss_pred             CEEEEECCCCchhHHHHHHHHH-CCCEEEEEe
Confidence            5799999999999999999985 588877654

>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2

Probab=91.54  E-value=0.88  Score=37.23  Aligned_cols=96  Identities=11%  Similarity=0.084  Sum_probs=50.8

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeC--CHHHHHhcccccCCccEEEEc
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS--DLTMVLGSISQSKARAVVIDF  113 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~--~l~ell~~~~~~~~~DVVIDf  113 (163)
                      -+|.|.|++|.+|...++.+. .-+.++..+.++...-..+.+ .|..   .+.-+.  ++.+.+.+......+|+++|+
T Consensus       141 ~~vlI~g~~g~ig~~~~~~a~-~~G~~v~~~~~~~~~~~~~~~-~g~~---~~~~~~~~~~~~~i~~~~~~~~~d~v~d~  215 (324)
T cd08292         141 QWLIQNAAGGAVGKLVAMLAA-ARGINVINLVRRDAGVAELRA-LGIG---PVVSTEQPGWQDKVREAAGGAPISVALDS  215 (324)
T ss_pred             CEEEEcccccHHHHHHHHHHH-HCCCeEEEEecCHHHHHHHHh-cCCC---EEEcCCCchHHHHHHHHhCCCCCcEEEEC
Confidence            579999989999999888765 668898877774321111111 1110   011111  222222111112479999998


Q ss_pred             cCchhHHHHHHHHHHc-CCcEEEeC
Q 031216          114 TDASTVYDNVKQATAF-GMRSVVYV  137 (163)
Q Consensus       114 T~p~~~~~~~~~al~~-G~~vVigt  137 (163)
                      +-..... .+..++.. |.=+.+|.
T Consensus       216 ~g~~~~~-~~~~~l~~~g~~v~~g~  239 (324)
T cd08292         216 VGGKLAG-ELLSLLGEGGTLVSFGS  239 (324)
T ss_pred             CCChhHH-HHHHhhcCCcEEEEEec
Confidence            7554433 33444444 44333543

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=91.54  E-value=2.6  Score=33.61  Aligned_cols=87  Identities=17%  Similarity=0.156  Sum_probs=49.2

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcce-eCCHHHHHhcccccCCccEEEEcc
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDLTMVLGSISQSKARAVVIDFT  114 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v-~~~l~ell~~~~~~~~~DVVIDfT  114 (163)
                      .||.|+|+ |.+|...++.+.+ .+.+++ ++++.. ...+.++..   ...+.. ...+++..-     ..+|+||-+|
T Consensus        11 k~vLVIGg-G~va~~ka~~Ll~-~ga~V~-VIs~~~-~~~l~~l~~---~~~i~~~~~~~~~~~l-----~~adlViaaT   78 (202)
T PRK06718         11 KRVVIVGG-GKVAGRRAITLLK-YGAHIV-VISPEL-TENLVKLVE---EGKIRWKQKEFEPSDI-----VDAFLVIAAT   78 (202)
T ss_pred             CEEEEECC-CHHHHHHHHHHHH-CCCeEE-EEcCCC-CHHHHHHHh---CCCEEEEecCCChhhc-----CCceEEEEcC
Confidence            58999994 9999999998875 457776 445432 122333321   112221 123333221     3889988777


Q ss_pred             CchhHHHHHHHHHHcCCcEE
Q 031216          115 DASTVYDNVKQATAFGMRSV  134 (163)
Q Consensus       115 ~p~~~~~~~~~al~~G~~vV  134 (163)
                      ..+.....+....+.++.+-
T Consensus        79 ~d~elN~~i~~~a~~~~lvn   98 (202)
T PRK06718         79 NDPRVNEQVKEDLPENALFN   98 (202)
T ss_pred             CCHHHHHHHHHHHHhCCcEE
Confidence            65555444433336676544

>PRK12744 short chain dehydrogenase; Provisional

Probab=91.52  E-value=2.6  Score=33.59  Aligned_cols=32  Identities=19%  Similarity=0.280  Sum_probs=26.4

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid   68 (163)
                      .++.|+|++|.+|+.+++.+.+ .+.+++.+..
T Consensus         9 k~vlItGa~~gIG~~~a~~l~~-~G~~vv~i~~   40 (257)
T PRK12744          9 KVVLIAGGAKNLGGLIARDLAA-QGAKAVAIHY   40 (257)
T ss_pred             cEEEEECCCchHHHHHHHHHHH-CCCcEEEEec
Confidence            5799999999999999999974 6888665443

>PRK05854 short chain dehydrogenase; Provisional

Probab=91.51  E-value=1.2  Score=37.29  Aligned_cols=34  Identities=21%  Similarity=0.330  Sum_probs=28.0

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid   68 (163)
                      +...+.|+|+++.+|+.+++.+.+ .+.+++.+..
T Consensus        13 ~gk~~lITGas~GIG~~~a~~La~-~G~~Vil~~R   46 (313)
T PRK05854         13 SGKRAVVTGASDGLGLGLARRLAA-AGAEVILPVR   46 (313)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHH-CCCEEEEEeC
Confidence            446899999999999999999984 6788876543

>PRK07890 short chain dehydrogenase; Provisional

Probab=91.50  E-value=1  Score=35.74  Aligned_cols=30  Identities=23%  Similarity=0.383  Sum_probs=25.8

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEE
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgv   66 (163)
                      .++.|+|++|.+|+.+++.+. ..+.+++.+
T Consensus         6 k~vlItGa~~~IG~~la~~l~-~~G~~V~~~   35 (258)
T PRK07890          6 KVVVVSGVGPGLGRTLAVRAA-RAGADVVLA   35 (258)
T ss_pred             CEEEEECCCCcHHHHHHHHHH-HcCCEEEEE
Confidence            579999999999999999998 467887754

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=91.47  E-value=0.79  Score=37.64  Aligned_cols=94  Identities=17%  Similarity=0.140  Sum_probs=49.6

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCccee--CCHHHHHhcccccCCccEEEEc
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAVVIDF  113 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~--~~l~ell~~~~~~~~~DVVIDf  113 (163)
                      -+|.|.|++|.+|...++.+. ..++++++..++...-..+.+ .|.   ..+.-+  .++.+.+.+.. ...+|+++|+
T Consensus       145 ~~vlI~ga~g~vG~~aiqlA~-~~G~~vi~~~~s~~~~~~l~~-~Ga---~~vi~~~~~~~~~~v~~~~-~~gvd~vld~  218 (329)
T cd08294         145 ETVVVNGAAGAVGSLVGQIAK-IKGCKVIGCAGSDDKVAWLKE-LGF---DAVFNYKTVSLEEALKEAA-PDGIDCYFDN  218 (329)
T ss_pred             CEEEEecCccHHHHHHHHHHH-HcCCEEEEEeCCHHHHHHHHH-cCC---CEEEeCCCccHHHHHHHHC-CCCcEEEEEC
Confidence            479999999999999888776 568888766553211011111 111   011111  13322222111 1468999998


Q ss_pred             cCchhHHHHHHHHH-HcCCcEEEe
Q 031216          114 TDASTVYDNVKQAT-AFGMRSVVY  136 (163)
Q Consensus       114 T~p~~~~~~~~~al-~~G~~vVig  136 (163)
                      +-.... +....++ ..|.-+.+|
T Consensus       219 ~g~~~~-~~~~~~l~~~G~iv~~g  241 (329)
T cd08294         219 VGGEFS-STVLSHMNDFGRVAVCG  241 (329)
T ss_pred             CCHHHH-HHHHHhhccCCEEEEEc
Confidence            765433 4444444 444444454

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]

Probab=91.41  E-value=0.62  Score=40.75  Aligned_cols=98  Identities=17%  Similarity=0.262  Sum_probs=61.6

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe---------cCCCC--cchhhh-----------ccCCCCCCccee
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID---------SHSVG--EDIGMV-----------CDMEQPLEIPVM   91 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid---------~~~~g--~~~~~l-----------~g~~~~~gi~v~   91 (163)
                      +++||.++| +|+=|+.+++.+.+.-. +.- ..+         -...|  +.+.+.           .|+.-+.++...
T Consensus        20 ~~~kV~ivG-sGnWGsaiaki~~~n~~-~~~-~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv   96 (372)
T KOG2711|consen   20 DPLKVCIVG-SGNWGSAIAKIVGENVK-EFP-IFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAV   96 (372)
T ss_pred             CceEEEEEc-cChHHHHHHHHHhhhhh-hcc-ccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEec
Confidence            479999999 79999999988764221 110 111         01122  111121           122234556667


Q ss_pred             CCHHHHHhcccccCCccEEEEccCchhHH----HHHHHHHHcCCcEEEeCCCCC
Q 031216           92 SDLTMVLGSISQSKARAVVIDFTDASTVY----DNVKQATAFGMRSVVYVPHIQ  141 (163)
Q Consensus        92 ~~l~ell~~~~~~~~~DVVIDfT~p~~~~----~~~~~al~~G~~vVigttg~~  141 (163)
                      +|+.++..      ++|++| |..|+...    +.+.-.++.+.+.|+-+-|++
T Consensus        97 ~dl~ea~~------dADilv-f~vPhQf~~~ic~~l~g~vk~~~~aISL~KG~e  143 (372)
T KOG2711|consen   97 PDLVEAAK------DADILV-FVVPHQFIPRICEQLKGYVKPGATAISLIKGVE  143 (372)
T ss_pred             chHHHHhc------cCCEEE-EeCChhhHHHHHHHHhcccCCCCeEEEeeccee
Confidence            89988874      899998 77776653    455667788888887666764

>PRK08251 short chain dehydrogenase; Provisional

Probab=91.35  E-value=1  Score=35.55  Aligned_cols=31  Identities=23%  Similarity=0.349  Sum_probs=25.7

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvi   67 (163)
                      .++.|+|++|.+|+.+++.+.+. +.+++.+.
T Consensus         3 k~vlItGas~giG~~la~~l~~~-g~~v~~~~   33 (248)
T PRK08251          3 QKILITGASSGLGAGMAREFAAK-GRDLALCA   33 (248)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHc-CCEEEEEe
Confidence            46999999999999999999854 67876543

>cd05295 MDH_like Malate dehydrogenase-like

Probab=91.34  E-value=0.28  Score=44.16  Aligned_cols=72  Identities=15%  Similarity=0.260  Sum_probs=45.7

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHh------cCCcEEEEEEecC-C----CC--cchhhhc-cCCCCCCcceeCCHHHHHh
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTK------ARGMEVAGAIDSH-S----VG--EDIGMVC-DMEQPLEIPVMSDLTMVLG   99 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~------~~~~eLvgvid~~-~----~g--~~~~~l~-g~~~~~gi~v~~~l~ell~   99 (163)
                      .++||.|.||.|.+|-.++-.|.+      ...+.|+ ++|.+ .    .|  +|+.+-+ .+  ..++.++++..+.+.
T Consensus       122 ~p~~V~vtgAag~i~Y~l~~~ia~G~~fG~~~~v~L~-LlDi~~~~~~l~G~amDL~D~a~pl--l~~v~i~~~~~ea~~  198 (452)
T cd05295         122 NPLQVCITNASAPLCYHLIPSLASGEVFGMEEEISIH-LLDSPENLEKLKGLVMEVEDLAFPL--LRGISVTTDLDVAFK  198 (452)
T ss_pred             CceEEEEecCcHHHHHHHHHHHhCCcccCCCCeEEEE-EEcCCCchhhHHHHHHHHHHhHHhh--cCCcEEEECCHHHhC
Confidence            369999999999999999998875      3444555 56742 1    12  2222221 11  114667767777774


Q ss_pred             cccccCCccEEEEcc
Q 031216          100 SISQSKARAVVIDFT  114 (163)
Q Consensus       100 ~~~~~~~~DVVIDfT  114 (163)
                            ++|+||...
T Consensus       199 ------daDvvIita  207 (452)
T cd05295         199 ------DAHVIVLLD  207 (452)
T ss_pred             ------CCCEEEECC
Confidence                  999988543

These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR02685 pter_reduc_Leis pteridine reductase

Probab=91.30  E-value=1.3  Score=35.61  Aligned_cols=32  Identities=25%  Similarity=0.435  Sum_probs=26.7

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (163)
Q Consensus        37 rV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~   69 (163)
                      -+.|.|++|.+|+.+++.+. ..+.+++...++
T Consensus         3 ~~lITGas~gIG~~~a~~l~-~~G~~V~~~~~~   34 (267)
T TIGR02685         3 AAVVTGAAKRIGSSIAVALH-QEGYRVVLHYHR   34 (267)
T ss_pred             EEEEeCCCCcHHHHHHHHHH-hCCCeEEEEcCC
Confidence            37899999999999999997 478898866543

Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	163
1dih_A	273	Dihydrodipicolinate reductase; oxidoreductase; HET	4e-09
1p9l_A	245	Dihydrodipicolinate reductase; oxidoreductase, lys	5e-09
4f3y_A	272	DHPR, dihydrodipicolinate reductase; structural ge	1e-08
3ijp_A	288	DHPR, dihydrodipicolinate reductase; ssgcid, SBRI,	2e-08

>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A* Length = 273

 Score = 53.0 bits (128), Expect = 4e-09
 Identities = 26/107 (24%), Positives = 42/107 (39%), Gaps = 10/107 (9%)

Query: 32  PQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID---SHSVGEDIGMVCDMEQPLEI 88
             +NI+V I GA   +GR  + A     G+++  A++   S  +G D G +        +
Sbjct: 2   HDANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAG-KTGV 60

Query: 89  PVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVV 135
            V S L  V           V IDFT      +++      G   V+
Sbjct: 61  TVQSSLDAVKDDFD------VFIDFTRPEGTLNHLAFCRQHGKGMVI 101

>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A* Length = 245

 Score = 52.6 bits (127), Expect = 5e-09
 Identities = 22/100 (22%), Positives = 41/100 (41%), Gaps = 26/100 (26%)

Query: 36  IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLT 95
           ++V + GA  ++G   V AV  A  + ++  +D    G+ + ++ D          ++  
Sbjct: 1   MRVGVLGAKGKVGTTMVRAVAAADDLTLSAELD---AGDPLSLLTDGN--------TE-- 47

Query: 96  MVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVV 135
                        VVIDFT    V  N++     G+ +VV
Sbjct: 48  -------------VVIDFTHPDVVMGNLEFLIDNGIHAVV 74

>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} Length = 272

 Score = 51.8 bits (125), Expect = 1e-08
 Identities = 25/105 (23%), Positives = 44/105 (41%), Gaps = 11/105 (10%)

Query: 34  SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID---SHSVGEDIGMVCDMEQPLEIPV 90
           S++K+ I GA   +GR  + AV  A    + GA+D   S  +G+D G      +   + +
Sbjct: 6   SSMKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQLGQDAGAFLG--KQTGVAL 63

Query: 91  MSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVV 135
             D+  V            +IDFT       ++  A    ++ V+
Sbjct: 64  TDDIERVC------AEADYLIDFTLPEGTLVHLDAALRHDVKLVI 102

>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae} Length = 288

 Score = 51.1 bits (123), Expect = 2e-08
 Identities = 14/105 (13%), Positives = 40/105 (38%), Gaps = 10/105 (9%)

Query: 34  SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID---SHSVGEDIGMVCDMEQPLEIPV 90
            ++++ + GA   +GR  + A+ + + +E+   +    S  V +D  ++   +  L + +
Sbjct: 20  GSMRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSSFVDKDASILIGSD-FLGVRI 78

Query: 91  MSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVV 135
             D      +         ++DF+           A    +  ++
Sbjct: 79  TDDPESAFSNTE------GILDFSQPQASVLYANYAAQKSLIHII 117

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	163
3ijp_A	288	DHPR, dihydrodipicolinate reductase; ssgcid, SBRI,	99.95
4f3y_A	272	DHPR, dihydrodipicolinate reductase; structural ge	99.94
1dih_A	273	Dihydrodipicolinate reductase; oxidoreductase; HET	99.92
3qy9_A	243	DHPR, dihydrodipicolinate reductase; rossmann fold	99.88
1p9l_A	245	Dihydrodipicolinate reductase; oxidoreductase, lys	99.86
1vm6_A	228	DHPR, dihydrodipicolinate reductase; TM1520, struc	99.83
4had_A	350	Probable oxidoreductase protein; structural genomi	99.78
4fb5_A	393	Probable oxidoreductase protein; PSI-biology, nysg	99.78
3ec7_A	357	Putative dehydrogenase; alpha-beta, structural gen	99.73
3rc1_A	350	Sugar 3-ketoreductase; sugar biosynthesis, TDP bin	99.73
3i23_A	349	Oxidoreductase, GFO/IDH/MOCA family; structural ge	99.72
3evn_A	329	Oxidoreductase, GFO/IDH/MOCA family; structural ge	99.72
4ew6_A	330	D-galactose-1-dehydrogenase protein; nysgrc, PSI-b	99.72
3e18_A	359	Oxidoreductase; dehydrogenase, NAD-binding, struct	99.71
1zh8_A	340	Oxidoreductase; TM0312, structural genomics, JO ce	99.71
4gqa_A	412	NAD binding oxidoreductase; structural genomics, P	99.71
3kux_A	352	Putative oxidoreductase; oxidoreductase family, cs	99.71
4hkt_A	331	Inositol 2-dehydrogenase; structural genomics, nys	99.71
1lc0_A	294	Biliverdin reductase A; oxidoreductase, tetrapyrro	99.71
3fhl_A	362	Putative oxidoreductase; NAD-binding domain, PSI-2	99.71
3euw_A	344	MYO-inositol dehydrogenase; protein structure init	99.71
2nvw_A	479	Galactose/lactose metabolism regulatory protein GA	99.7
3db2_A	354	Putative NADPH-dependent oxidoreductase; two domai	99.7
3e82_A	364	Putative oxidoreductase; NAD, GFO/IDH/MOCA family,	99.7
3e9m_A	330	Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA,	99.7
3ohs_X	334	Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d	99.69
3moi_A	387	Probable dehydrogenase; structural genomics, PSI2,	99.69
3q2i_A	354	Dehydrogenase; rossmann fold, UDP-sugar binding, N	99.69
3mz0_A	344	Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd;	99.69
3ezy_A	344	Dehydrogenase; structural genomics, unknown functi	99.69
1ydw_A	362	AX110P-like protein; structural genomics, protein	99.69
3o9z_A	312	Lipopolysaccaride biosynthesis protein WBPB; oxido	99.69
3f4l_A	345	Putative oxidoreductase YHHX; structural genomics,	99.69
4h3v_A	390	Oxidoreductase domain protein; structural genomics	99.68
2ho3_A	325	Oxidoreductase, GFO/IDH/MOCA family; streptococcus	99.68
3upl_A	446	Oxidoreductase; rossmann fold, NADPH binding; 1.50	99.68
3m2t_A	359	Probable dehydrogenase; PSI, SGXNY, structural gen	99.68
3gdo_A	358	Uncharacterized oxidoreductase YVAA; structural ge	99.67
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	99.67
3oa2_A	318	WBPB; oxidoreductase, sugar biosynthesis, dehydrog	99.67
3c1a_A	315	Putative oxidoreductase; ZP_00056571.1, oxidoreduc	99.67
3uuw_A	308	Putative oxidoreductase with NAD(P)-binding rossm	99.67
4gmf_A	372	Yersiniabactin biosynthetic protein YBTU; rossmann	99.67
1h6d_A	433	Precursor form of glucose-fructose oxidoreductase;	99.67
2nu8_A	288	Succinyl-COA ligase [ADP-forming] subunit alpha; c	99.66
1tlt_A	319	Putative oxidoreductase (virulence factor MVIM HO;	99.66
2ixa_A	444	Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver	99.65
3oqb_A	383	Oxidoreductase; structural genomics, protein struc	99.64
1oi7_A	288	Succinyl-COA synthetase alpha chain; SCS, ligase,	99.64
3dty_A	398	Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram	99.63
3ip3_A	337	Oxidoreductase, putative; structural genomics, PSI	99.63
3u3x_A	361	Oxidoreductase; structural genomics, PSI-biology,	99.63
2glx_A	332	1,5-anhydro-D-fructose reductase; NADP(H) dependen	99.62
1f06_A	320	MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH	99.61
2p2s_A	336	Putative oxidoreductase; YP_050235.1, structural g	99.61
2yv2_A	297	Succinyl-COA synthetase alpha chain; COA-binding d	99.61
3v5n_A	417	Oxidoreductase; structural genomics, PSI-biology,	99.61
3btv_A	438	Galactose/lactose metabolism regulatory protein GA	99.6
2yv1_A	294	Succinyl-COA ligase [ADP-forming] subunit alpha; C	99.6
3bio_A	304	Oxidoreductase, GFO/IDH/MOCA family; structural ge	99.56
3do5_A	327	HOM, homoserine dehydrogenase; NP_069768.1, putati	99.55
1xea_A	323	Oxidoreductase, GFO/IDH/MOCA family; structural ge	99.53
2dc1_A	236	L-aspartate dehydrogenase; NAD, oxidoreductase; HE	99.51
3mtj_A	444	Homoserine dehydrogenase; rossmann-fold, PSI, MCSG	99.5
3ing_A	325	Homoserine dehydrogenase; NP_394635.1, structural	99.44
3c8m_A	331	Homoserine dehydrogenase; structural genomics, APC	99.43
1ebf_A	358	Homoserine dehydrogenase; dinucleotide, NAD, dimer	99.37
2ejw_A	332	HDH, homoserine dehydrogenase; NAD-dependent, oxid	99.34
1j5p_A	253	Aspartate dehydrogenase; TM1643, structural genomi	99.34
3mwd_B	334	ATP-citrate synthase; ATP-grAsp, phosphohistidine,	99.32
2czc_A	334	Glyceraldehyde-3-phosphate dehydrogenase; glycolys	99.29
1nvm_B	312	Acetaldehyde dehydrogenase (acylating), 4-hydroxy-	99.19
1b7g_O	340	Protein (glyceraldehyde 3-phosphate dehydrogenase;	99.15
2fp4_A	305	Succinyl-COA ligase [GDP-forming] alpha-chain, mit	99.15
2g0t_A	350	Conserved hypothetical protein; structural genomic	99.12
1cf2_P	337	Protein (glyceraldehyde-3-phosphate dehydrogenase)	99.11
2obn_A	349	Hypothetical protein; structural genomics, joint c	99.07
3dr3_A	337	N-acetyl-gamma-glutamyl-phosphate reductase; csgid	99.05
2ep5_A	350	350AA long hypothetical aspartate-semialdehyde deh	98.98
2ozp_A	345	N-acetyl-gamma-glutamyl-phosphate reductase; amino	98.96
1r0k_A	388	1-deoxy-D-xylulose 5-phosphate reductoisomerase; N	98.91
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	98.89
2d59_A	144	Hypothetical protein PH1109; COA binding, structur	98.86
1y81_A	138	Conserved hypothetical protein; hyperthermophIle,	98.85
1ys4_A	354	Aspartate-semialdehyde dehydrogenase; oxidoreducta	98.82
2duw_A	145	Putative COA-binding protein; ligand binding prote	98.78
2dt5_A	211	AT-rich DNA-binding protein; REX, NADH, NAD, rossm	98.78
3e5r_O	337	PP38, glyceraldehyde-3-phosphate dehydrogenase, cy	98.77
1xyg_A	359	Putative N-acetyl-gamma-glutamyl-phosphate reduct;	98.77
4dpk_A	359	Malonyl-COA/succinyl-COA reductase; dinucleotide b	98.74
4dpl_A	359	Malonyl-COA/succinyl-COA reductase; dinucleotide b	98.74
1vkn_A	351	N-acetyl-gamma-glutamyl-phosphate reductase; TM178	98.72
2yyy_A	343	Glyceraldehyde-3-phosphate dehydrogenase; glyceral	98.71
3pff_A	829	ATP-citrate synthase; phosphohistidine, organic ac	98.7
2vt3_A	215	REX, redox-sensing transcriptional repressor REX;	98.69
1iuk_A	140	Hypothetical protein TT1466; structural genomics,	98.69
1u8f_O	335	GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l	98.68
2r00_A	336	Aspartate-semialdehyde dehydrogenase; conformation	98.66
3hsk_A	381	Aspartate-semialdehyde dehydrogenase; candida albi	98.65
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	98.62
2nqt_A	352	N-acetyl-gamma-glutamyl-phosphate reductase; apopr	98.58
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	98.54
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	98.54
1rm4_O	337	Glyceraldehyde 3-phosphate dehydrogenase A; rossma	98.52
3pwk_A	366	Aspartate-semialdehyde dehydrogenase; NADP binding	98.52
3keo_A	212	Redox-sensing transcriptional repressor REX; DNA b	98.52
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	98.51
1gad_O	330	D-glyceraldehyde-3-phosphate dehydrogenase; oxidor	98.49
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	98.48
3uw3_A	377	Aspartate-semialdehyde dehydrogenase; structural g	98.47
3pzr_A	370	Aspartate-semialdehyde dehydrogenase; NADP, oxidor	98.46
2hjs_A	340	USG-1 protein homolog; aspartate-semialdehyde dehy	98.46
3cmc_O	334	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; m	98.46
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	98.45
3b1j_A	339	Glyceraldehyde 3-phosphate dehydrogenase (NADP+);	98.45
1t4b_A	367	Aspartate-semialdehyde dehydrogenase; asadh, HOSR,	98.45
3tz6_A	344	Aspartate-semialdehyde dehydrogenase; asadh, ASD,	98.44
3cps_A	354	Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g	98.44
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	98.39
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	98.39
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	98.39
2x5j_O	339	E4PDH, D-erythrose-4-phosphate dehydrogenase; oxid	98.39
2ph5_A	480	Homospermidine synthase; alpha-beta protein, struc	98.38
3ff4_A	122	Uncharacterized protein; structural genomics, PSI-	98.37
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	98.37
2d2i_A	380	Glyceraldehyde 3-phosphate dehydrogenase; rossmann	98.36
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	98.35
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	98.35
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	98.34
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	98.31
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	98.31
3a06_A	376	1-deoxy-D-xylulose 5-phosphate reductoisomerase; M	98.31
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	98.28
1hdg_O	332	Holo-D-glyceraldehyde-3-phosphate dehydrogenase; o	98.27
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	98.25
2csu_A	457	457AA long hypothetical protein; structural genomi	98.23
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	98.23
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	98.21
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	98.19
1gr0_A	367	Inositol-3-phosphate synthase; isomerase, oxidored	98.18
3nkl_A	141	UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fo	98.17
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	98.17
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	98.15
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	98.15
3qha_A	296	Putative oxidoreductase; seattle structural genomi	98.1
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	98.1
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	98.07
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	98.05
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	98.03
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	97.99
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	97.98
1obf_O	335	Glyceraldehyde 3-phosphate dehydrogenase; glycolyt	97.98
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	97.97
4ezb_A	317	Uncharacterized conserved protein; structural geno	97.94
2g82_O	331	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G	97.93
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	97.89
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	97.88
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	97.88
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	97.87
2b4r_O	345	Glyceraldehyde-3-phosphate dehydrogenase; SGPP, st	97.87
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	97.86
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	97.86
2ep7_A	342	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; o	97.86
2yv3_A	331	Aspartate-semialdehyde dehydrogenase; aspartate pa	97.84
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	97.81
3pym_A	332	GAPDH 3, glyceraldehyde-3-phosphate dehydrogenase	97.8
2i76_A	276	Hypothetical protein; NADP, dehydrogenase, TM1727,	97.79
3lvf_P	338	GAPDH 1, glyceraldehyde-3-phosphate dehydrogenase	97.78
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	97.78
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	97.78
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	97.78
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	97.75
4dib_A	345	GAPDH, glyceraldehyde 3-phosphate dehydrogenase; n	97.73
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	97.73
2i99_A	312	MU-crystallin homolog; thyroid hormine binding pro	97.73
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	97.7
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	97.69
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	97.69
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	97.67
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	97.66
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	97.63
3h9e_O	346	Glyceraldehyde-3-phosphate dehydrogenase, testis-;	97.63
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	97.61
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	97.61
3v1y_O	337	PP38, glyceraldehyde-3-phosphate dehydrogenase, cy	97.55
3doc_A	335	Glyceraldehyde 3-phosphate dehydrogenase; ssgcid,	97.54
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	97.53
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	97.53
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	97.49
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	97.48
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	97.47
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	97.46
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	97.45
3sc6_A	287	DTDP-4-dehydrorhamnose reductase; RFBD, structural	97.43
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	97.42
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	97.41
1vl0_A	292	DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s	97.41
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	97.41
4egb_A	346	DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce	97.39
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	97.32
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	97.32
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	97.31
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	97.31
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	97.3
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	97.27
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	97.26
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	97.25
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	97.25
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	97.25
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	97.25
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	97.25
4fgw_A	391	Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi	97.23
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	97.23
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	97.23
2y1e_A	398	1-deoxy-D-xylulose 5-phosphate reductoisomerase; o	97.23
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	97.21
1xq6_A	253	Unknown protein; structural genomics, protein stru	97.2
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	97.19
1oc2_A	348	DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos	97.18
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	97.17
3ids_C	359	GAPDH, glyceraldehyde-3-phosphate dehydrogenase, g	97.17
3hja_A	356	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; n	97.17
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	97.16
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	97.16
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	97.15
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	97.15
1rpn_A	335	GDP-mannose 4,6-dehydratase; short-chain dehydroge	97.15
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	97.14
2b69_A	343	UDP-glucuronate decarboxylase 1; UDP-glucoronic ac	97.14
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	97.12
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	97.12
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	97.11
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	97.11
3c85_A	183	Putative glutathione-regulated potassium-efflux S	97.1
2bll_A	345	Protein YFBG; decarboxylase, short chain dehydroge	97.1
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	97.09
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	97.09
4b8w_A	319	GDP-L-fucose synthase; oxidoreductase; HET: NAP GD	97.08
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	97.08
3fr7_A	525	Putative ketol-acid reductoisomerase (OS05G057370	97.08
2tmg_A	415	Protein (glutamate dehydrogenase); metabolic role,	97.07
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	97.07
2yy7_A	312	L-threonine dehydrogenase; thermolabIle, flavobact	97.06
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	97.06
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	97.06
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	97.04
1x7d_A	350	Ornithine cyclodeaminase; binds NAD+, binds L-orni	97.03
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	97.03
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	97.03
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	97.03
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	97.03
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	97.03
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	97.02
1vjp_A	394	MYO-inositol-1-phosphate synthase-related protein;	97.01
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	97.0
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	96.98
1n2s_A	299	DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold	96.98
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	96.97
2rh8_A	338	Anthocyanidin reductase; flavonoids, rossmann fold	96.97
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	96.97
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	96.97
3cin_A	394	MYO-inositol-1-phosphate synthase-related protein;	96.96
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	96.95
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	96.93
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	96.92
3ehe_A	313	UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC,	96.91
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	96.91
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	96.89
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	96.88
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	96.87
1q0q_A	406	1-deoxy-D-xylulose 5-phosphate reductoisomerase; o	96.87
1e6u_A	321	GDP-fucose synthetase; epimerase/reductase, SDR, R	96.85
3aog_A	440	Glutamate dehydrogenase; NAD(H), oxidoreducta; HET	96.84
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	96.83
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	96.82
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	96.82
2c20_A	330	UDP-glucose 4-epimerase; carbohydrate metabolism,	96.82
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	96.8
3dmy_A	480	Protein FDRA; predicted actyl-COA synthetase, nysg	96.8
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	96.79
1omo_A	322	Alanine dehydrogenase; two-domain, beta-sandwich-d	96.78
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	96.78
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	96.76
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	96.75
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	96.73
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	96.73
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	96.73
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	96.71
2x6t_A	357	ADP-L-glycero-D-manno-heptose-6-epimerase; isomera	96.71
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	96.71
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	96.71
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	96.7
1z7e_A	660	Protein aRNA; rossmann fold, OB-like fold, hydrola	96.7
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	96.7
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	96.69
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	96.69
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	96.68
1kew_A	361	RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo	96.68
1eq2_A	310	ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin	96.67
1orr_A	347	CDP-tyvelose-2-epimerase; rossmann fold, short-cha	96.67
1t2a_A	375	GDP-mannose 4,6 dehydratase; structural genomics c	96.67
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	96.66
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	96.63
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	96.63
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	96.61
1r6d_A	337	TDP-glucose-4,6-dehydratase; rossmann fold, short-	96.61
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	95.63
2hun_A	336	336AA long hypothetical DTDP-glucose 4,6-dehydrat;	96.57
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	96.56
3st7_A	369	Capsular polysaccharide synthesis enzyme CAP5F; ro	96.56
1v9l_A	421	Glutamate dehydrogenase; protein-NAD complex, oxid	96.55
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	96.55
1ek6_A	348	UDP-galactose 4-epimerase; short-chain dehydrogena	96.54
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	96.53
2yfq_A	421	Padgh, NAD-GDH, NAD-specific glutamate dehydrogena	96.52
2ggs_A	273	273AA long hypothetical DTDP-4-dehydrorhamnose red	96.52
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	96.52
3ay3_A	267	NAD-dependent epimerase/dehydratase; glucuronic ac	96.48
2bma_A	470	Glutamate dehydrogenase (NADP+); malaria, drug des	96.48
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	96.48
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	96.47
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	96.46
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	96.45
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	96.45
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	96.43
3k92_A	424	NAD-GDH, NAD-specific glutamate dehydrogenase; ROC	96.42
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	96.42
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	96.41
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	96.4
3rft_A	267	Uronate dehydrogenase; apoenzyme, rossmann fold, N	96.4
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	96.39
3ajr_A	317	NDP-sugar epimerase; L-threonine dehydrogenase, L-	96.39
3d7l_A	202	LIN1944 protein; APC89317, structural genomics, PS	96.38
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	96.35
1gy8_A	397	UDP-galactose 4-epimerase; oxidoreductase; HET: NA	96.35
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	96.27
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	96.26
3aoe_E	419	Glutamate dehydrogenase; rossmann fold, NADH, oxid	96.25
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	96.24
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	96.23
4ea9_A	220	Perosamine N-acetyltransferase; beta helix, acetyl	96.23
2pk3_A	321	GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor	96.21
3ko8_A	312	NAD-dependent epimerase/dehydratase; isomerase, UD	96.21
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	96.21
3un1_A	260	Probable oxidoreductase; structural genomics, PSI-	96.21
3au8_A	488	1-deoxy-D-xylulose 5-phosphate reductoisomerase; N	96.2
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	96.19
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	96.18
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	96.18
2v6g_A	364	Progesterone 5-beta-reductase; tyrosine-dependent	96.17
2hrz_A	342	AGR_C_4963P, nucleoside-diphosphate-sugar epimeras	96.17
1bgv_A	449	Glutamate dehydrogenase; oxidoreductase; HET: GLU;	96.16
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	96.15
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	96.15
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	96.13
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	96.13
2p5y_A	311	UDP-glucose 4-epimerase; TTHA0591, structural geno	96.11
1db3_A	372	GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya	96.1
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	96.1
4gsl_A	615	Ubiquitin-like modifier-activating enzyme ATG7; ub	96.09
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	96.07
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	96.07
3hdj_A	313	Probable ornithine cyclodeaminase; APC62486, borde	96.02
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	95.98
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	95.94
4h7p_A	345	Malate dehydrogenase; ssgcid, structural G seattle	95.94
4f6c_A	427	AUSA reductase domain protein; thioester reductase	95.93
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	95.92
2p4h_X	322	Vestitone reductase; NADPH-dependent reductase, is	95.9
2c29_D	337	Dihydroflavonol 4-reductase; flavonoids, short deh	95.9
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	95.9
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	95.89
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	95.89
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	95.88
1udb_A	338	Epimerase, UDP-galactose-4-epimerase; isomerase; H	95.83
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	95.82
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	95.81
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	95.81
1rkx_A	357	CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD;	95.81
2a35_A	215	Hypothetical protein PA4017; alpha-beta-alpha sand	95.79
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	95.76
4e4y_A	244	Short chain dehydrogenase family protein; structur	95.75
2qk4_A	452	Trifunctional purine biosynthetic protein adenosi;	95.73
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	95.67
4fcc_A	450	Glutamate dehydrogenase; protein complex, rossmann	95.67
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	95.65
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	95.65
1y8q_A	346	Ubiquitin-like 1 activating enzyme E1A; SUMO, hete	95.64
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	95.63
3vh1_A	598	Ubiquitin-like modifier-activating enzyme ATG7; au	95.63
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	95.63
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	95.62
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	95.61
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	95.6
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	95.6
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	95.55
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	95.54
3uxy_A	266	Short-chain dehydrogenase/reductase SDR; structura	95.53
1n7h_A	381	GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR,	95.52
3r3j_A	456	Glutamate dehydrogenase; rossman fold, oxidoreduct	95.51
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	95.5
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	95.46
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	95.38
3kb6_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	95.33
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	95.31
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	95.31
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	95.3
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	95.27
4f6l_B	508	AUSA reductase domain protein; thioester reductase	95.25
1tt5_A	531	APPBP1, amyloid protein-binding protein 1; cell cy	95.24
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	95.21
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	95.19
1z45_A	699	GAL10 bifunctional protein; epimerase, mutarotase,	95.18
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	95.18
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	95.14
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	95.12
2ph3_A	245	3-oxoacyl-[acyl carrier protein] reductase; TTHA04	95.11
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	95.03
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	95.0
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	95.0
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	94.97
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	94.96
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	94.9
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	94.89
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	94.89
3cxt_A	291	Dehydrogenase with different specificities; rossma	94.89
2ehd_A	234	Oxidoreductase, oxidoreductase, short-chain dehydr	94.89
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	94.85
1dhr_A	241	Dihydropteridine reductase; oxidoreductase(acting	94.84
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	94.8
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	94.78
4e3z_A	272	Putative oxidoreductase protein; PSI-biology, stru	94.76
1uay_A	242	Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid	94.73
3i4f_A	264	3-oxoacyl-[acyl-carrier protein] reductase; struct	94.71
1ooe_A	236	Dihydropteridine reductase; structural genomics, P	94.7
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	94.69
1fjh_A	257	3alpha-hydroxysteroid dehydrogenase/carbonyl reduc	94.67
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	94.67
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	94.67
4eye_A	342	Probable oxidoreductase; structural genomics, niai	94.64
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	94.64
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	94.62
4dqx_A	277	Probable oxidoreductase protein; structural genomi	94.61
1id1_A	153	Putative potassium channel protein; RCK domain, E.	94.54
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	94.54
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	94.51
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	94.5
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	94.45
4hv4_A	494	UDP-N-acetylmuramate--L-alanine ligase; MURC, yers	94.44
3vtz_A	269	Glucose 1-dehydrogenase; rossmann fold, oxidoreduc	94.42
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	94.41
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	94.4
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	94.37
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	94.36
3u9l_A	324	3-oxoacyl-[acyl-carrier-protein] reductase; struct	94.35
2dtx_A	264	Glucose 1-dehydrogenase related protein; rossmann	94.35
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	94.34
3mw9_A	501	GDH 1, glutamate dehydrogenase 1; allostery, inhib	94.29
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	94.29
2ew8_A	249	(S)-1-phenylethanol dehydrogenase; transferase; 2.	94.29
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	94.28
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	94.25
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	94.22
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	94.21
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	94.2
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	94.2
1uls_A	245	Putative 3-oxoacyl-acyl carrier protein reductase;	94.2
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	94.19
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	94.19
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	94.17
1y7t_A	327	Malate dehydrogenase; NAD-dependent-MDH-NADPH comp	94.15
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	94.14
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	94.14
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	94.14
4ffl_A	363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	94.14
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	94.14
3rih_A	293	Short chain dehydrogenase or reductase; structural	94.13
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	94.1
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	94.09
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	94.08
3ezl_A	256	Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA	94.07
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	94.05
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	94.04
1y8q_B	640	Anthracycline-, ubiquitin-like 2 activating enzyme	94.03
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	94.03
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	94.0
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	94.0
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	94.0
4iiu_A	267	3-oxoacyl-[acyl-carrier protein] reductase; struct	93.95
1yo6_A	250	Putative carbonyl reductase sniffer; tyrosine-depe	93.95
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	93.94
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	93.94
1zk4_A	251	R-specific alcohol dehydrogenase; short chain redu	93.92
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	93.91
2cfc_A	250	2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor	93.89
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	93.89
3ged_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	93.88
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	93.87
3m1a_A	281	Putative dehydrogenase; short, PSI, MCSG, structur	93.84
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	93.83

>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}

Probab=99.95  E-value=4.1e-28  Score=202.80  Aligned_cols=122  Identities=13%  Similarity=0.280  Sum_probs=114.6

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC---CCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEE
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH---SVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVV  110 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~---~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVV  110 (163)
                      +|+||+|+||+|+||+.+++.+.+.|+++|+|++|+.   ..|+|+++++|.. +.++++++|+++++.      ++|||
T Consensus        20 ~~irV~V~Ga~GrMGr~i~~~v~~~~~~eLvg~vd~~~~~~~G~d~gel~G~~-~~gv~v~~dl~~ll~------~aDVv   92 (288)
T 3ijp_A           20 GSMRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSSFVDKDASILIGSD-FLGVRITDDPESAFS------NTEGI   92 (288)
T ss_dssp             -CEEEEESSTTSHHHHHHHHHHHTCSSEEEEEEBCCTTCTTTTSBGGGGTTCS-CCSCBCBSCHHHHTT------SCSEE
T ss_pred             CCeEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccchHHhhccC-cCCceeeCCHHHHhc------CCCEE
Confidence            5799999999999999999999999999999999964   3689999999886 789999999999985      89999


Q ss_pred             EEccCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeEEcCC
Q 031216          111 IDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVSTGS  162 (163)
Q Consensus       111 IDfT~p~~~~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv~tg~  162 (163)
                      ||||+|+.+.+++..|+++|+|+|+|||||++++.++|+++|++.|+|+++|
T Consensus        93 IDFT~p~a~~~~~~~~l~~Gv~vViGTTG~~~e~~~~L~~aa~~~~~~~a~N  144 (288)
T 3ijp_A           93 LDFSQPQASVLYANYAAQKSLIHIIGTTGFSKTEEAQIADFAKYTTIVKSGN  144 (288)
T ss_dssp             EECSCHHHHHHHHHHHHHHTCEEEECCCCCCHHHHHHHHHHHTTSEEEECSC
T ss_pred             EEcCCHHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHhCcCCEEEECC
Confidence            9999999999999999999999999999999999999999999999999987

>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=99.94  E-value=6.8e-27  Score=193.83  Aligned_cols=120  Identities=23%  Similarity=0.323  Sum_probs=112.7

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC---CCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEE
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH---SVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI  111 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~---~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVI  111 (163)
                      |+||+|+||+|+||+.+++.+.++++++|++++|+.   ..|+|++++.|.. + ++++++|+++++.      ++||||
T Consensus         7 mikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~~~~~G~d~gel~g~~-~-gv~v~~dl~~ll~------~~DVVI   78 (272)
T 4f3y_A            7 SMKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQLGQDAGAFLGKQ-T-GVALTDDIERVCA------EADYLI   78 (272)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTTCTTTTSBTTTTTTCC-C-SCBCBCCHHHHHH------HCSEEE
T ss_pred             ccEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecCcccccccHHHHhCCC-C-CceecCCHHHHhc------CCCEEE
Confidence            699999999999999999999999999999999964   3689999998874 4 9999999999986      799999


Q ss_pred             EccCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeEEcCC
Q 031216          112 DFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVSTGS  162 (163)
Q Consensus       112 DfT~p~~~~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv~tg~  162 (163)
                      |||+|+.+.+++..|+++|+++|+|||||++++.++|+++|++.|+|+++|
T Consensus        79 DfT~p~a~~~~~~~al~~G~~vVigTTG~s~~~~~~L~~aa~~~~vv~a~N  129 (272)
T 4f3y_A           79 DFTLPEGTLVHLDAALRHDVKLVIGTTGFSEPQKAQLRAAGEKIALVFSAN  129 (272)
T ss_dssp             ECSCHHHHHHHHHHHHHHTCEEEECCCCCCHHHHHHHHHHTTTSEEEECSC
T ss_pred             EcCCHHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHhccCCEEEECC
Confidence            999999999999999999999999999999999999999999999999987

>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*

Probab=99.92  E-value=5.8e-25  Score=181.95  Aligned_cols=122  Identities=22%  Similarity=0.314  Sum_probs=111.7

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC---CCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEE
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS---VGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVV  110 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~---~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVV  110 (163)
                      +++||+|+|++|+||+.+++.+.+.++++|++++|+..   .|.+++++.+.. +.++++++|+++++.      ++|||
T Consensus         4 ~~mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d~~~~~~~g~d~~~~~g~~-~~~v~~~~dl~~~l~------~~DvV   76 (273)
T 1dih_A            4 ANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAG-KTGVTVQSSLDAVKD------DFDVF   76 (273)
T ss_dssp             CBEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSS-CCSCCEESCSTTTTT------SCSEE
T ss_pred             CCcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCchhhhhhhHHHHcCCC-cCCceecCCHHHHhc------CCCEE
Confidence            46899999988999999999999999999999999643   377888888775 678899999998884      79999


Q ss_pred             EEccCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeEEcCC
Q 031216          111 IDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVSTGS  162 (163)
Q Consensus       111 IDfT~p~~~~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv~tg~  162 (163)
                      ||||+|+.+.+++..|+++|+|+|+||||+++++.++|.++|++.|++++++
T Consensus        77 IDft~p~~~~~~~~~a~~~G~~vVigTtG~~~e~~~~L~~~a~~~~vv~a~N  128 (273)
T 1dih_A           77 IDFTRPEGTLNHLAFCRQHGKGMVIGTTGFDEAGKQAIRDAAADIAIVFAAN  128 (273)
T ss_dssp             EECSCHHHHHHHHHHHHHTTCEEEECCCCCCHHHHHHHHHHTTTSCEEECSC
T ss_pred             EEcCChHHHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHhcCCCCEEEEec
Confidence            9999999999999999999999999999999999999999999999999985

>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}

Probab=99.88  E-value=8.5e-23  Score=166.77  Aligned_cols=106  Identities=13%  Similarity=0.243  Sum_probs=96.0

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT  114 (163)
                      |+||+|+|+ |+||+.+++.+.+.++ +|++++|+....           ..++++++|+++++       ++|||||||
T Consensus         3 MmkI~ViGa-GrMG~~i~~~l~~~~~-eLva~~d~~~~~-----------~~gv~v~~dl~~l~-------~~DVvIDft   62 (243)
T 3qy9_A            3 SMKILLIGY-GAMNQRVARLAEEKGH-EIVGVIENTPKA-----------TTPYQQYQHIADVK-------GADVAIDFS   62 (243)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTC-EEEEEECSSCC-------------CCSCBCSCTTTCT-------TCSEEEECS
T ss_pred             ceEEEEECc-CHHHHHHHHHHHhCCC-EEEEEEecCccc-----------cCCCceeCCHHHHh-------CCCEEEEeC
Confidence            799999997 9999999999999999 999999975321           45788999998864       689999999


Q ss_pred             CchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeEEcCC
Q 031216          115 DASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVSTGS  162 (163)
Q Consensus       115 ~p~~~~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv~tg~  162 (163)
                      .|+.+.+++.  +++|+++|+|||||++++.++|+++|++.|+|+++|
T Consensus        63 ~p~a~~~~~~--l~~g~~vVigTTG~s~e~~~~l~~aa~~~~v~~a~N  108 (243)
T 3qy9_A           63 NPNLLFPLLD--EDFHLPLVVATTGEKEKLLNKLDELSQNMPVFFSAN  108 (243)
T ss_dssp             CHHHHHHHHT--SCCCCCEEECCCSSHHHHHHHHHHHTTTSEEEECSS
T ss_pred             ChHHHHHHHH--HhcCCceEeCCCCCCHHHHHHHHHHHhcCCEEEECC
Confidence            9999999997  999999999999999999999999999999999987

>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*

Probab=99.86  E-value=4.1e-21  Score=156.96  Aligned_cols=101  Identities=23%  Similarity=0.338  Sum_probs=91.5

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEccC
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT~  115 (163)
                      +||+|+|++|+||+.+++.+.+.++++|++++|+.                     +|+++++.     .++|||||||+
T Consensus         1 mkV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~---------------------~dl~~~~~-----~~~DvvIDfT~   54 (245)
T 1p9l_A            1 MRVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAG---------------------DPLSLLTD-----GNTEVVIDFTH   54 (245)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTT---------------------CCTHHHHH-----TTCCEEEECSC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccC---------------------CCHHHHhc-----cCCcEEEEccC
Confidence            58999999999999999999989999999999852                     25666664     38999999999


Q ss_pred             chhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhh---hcCeEEcCC
Q 031216          116 ASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCD---KASMVSTGS  162 (163)
Q Consensus       116 p~~~~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~---~~~Vv~tg~  162 (163)
                      |+.+.+++..|+++|+++|+|||||++++.++|+++|+   ..++++++|
T Consensus        55 p~a~~~~~~~a~~~g~~~VigTTG~~~e~~~~l~~aa~~~~~~~vv~a~N  104 (245)
T 1p9l_A           55 PDVVMGNLEFLIDNGIHAVVGTTGFTAERFQQVESWLVAKPNTSVLIAPN  104 (245)
T ss_dssp             TTTHHHHHHHHHHTTCEEEECCCCCCHHHHHHHHHHHHTSTTCEEEECSC
T ss_pred             hHHHHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHHHHHhCCCCCEEEECC
Confidence            99999999999999999999999999999999999998   678999986

>1vm6_A DHPR, dihydrodipicolinate reductase; TM1520, structural genomics, protein structure initiative, PSI, joint center for structu genomics; HET: NAD PG4; 2.27A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3

Probab=99.83  E-value=2e-20  Score=151.52  Aligned_cols=98  Identities=18%  Similarity=0.271  Sum_probs=87.2

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT  114 (163)
                      -+|.+|+|++||||+.+++.+ ..++++|++++|+..   +                ++    +      .++|||||||
T Consensus        12 ~~~~~v~Ga~GrMG~~i~~~~-~~~~~elv~~id~~~---~----------------~~----l------~~~DVvIDFT   61 (228)
T 1vm6_A           12 HMKYGIVGYSGRMGQEIQKVF-SEKGHELVLKVDVNG---V----------------EE----L------DSPDVVIDFS   61 (228)
T ss_dssp             CCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEEETTE---E----------------EE----C------SCCSEEEECS
T ss_pred             cceeEEEEecCHHHHHHHHHH-hCCCCEEEEEEcCCC---c----------------cc----c------cCCCEEEECC
Confidence            378999999999999998765 689999999999631   0                11    1      2689999999


Q ss_pred             CchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeEEcCC
Q 031216          115 DASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVSTGS  162 (163)
Q Consensus       115 ~p~~~~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv~tg~  162 (163)
                      .|+.+.++++.|+++|+|+|+|||||++++.+.|++++++.|+++++|
T Consensus        62 ~P~a~~~~~~~~~~~g~~~ViGTTG~~~~~~~~l~~~a~~~~vv~apN  109 (228)
T 1vm6_A           62 SPEALPKTVDLCKKYRAGLVLGTTALKEEHLQMLRELSKEVPVVQAYN  109 (228)
T ss_dssp             CGGGHHHHHHHHHHHTCEEEECCCSCCHHHHHHHHHHTTTSEEEECSC
T ss_pred             CHHHHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHHhhCCEEEecc
Confidence            999999999999999999999999999999999999999999999987

>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}

Probab=99.78  E-value=6.4e-19  Score=147.45  Aligned_cols=117  Identities=21%  Similarity=0.203  Sum_probs=99.3

Q ss_pred             CCCeeEEEEcCCCHHHHH-HHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcc-eeCCHHHHHhcccccCCccEE
Q 031216           33 QSNIKVIINGAVKEIGRA-AVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP-VMSDLTMVLGSISQSKARAVV  110 (163)
Q Consensus        33 ~~~irV~VvGa~G~mG~~-i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~-v~~~l~ell~~~~~~~~~DVV  110 (163)
                      ++||||||+| +|+||+. ++..+...|+++|+|++|++.  ..+.++..   .++++ +|+|++++++.    +++|+|
T Consensus        21 ~~mirigiIG-~G~ig~~~~~~~~~~~~~~~lvav~d~~~--~~a~~~a~---~~g~~~~y~d~~ell~~----~~iDaV   90 (350)
T 4had_A           21 QSMLRFGIIS-TAKIGRDNVVPAIQDAENCVVTAIASRDL--TRAREMAD---RFSVPHAFGSYEEMLAS----DVIDAV   90 (350)
T ss_dssp             -CCEEEEEES-CCHHHHHTHHHHHHHCSSEEEEEEECSSH--HHHHHHHH---HHTCSEEESSHHHHHHC----SSCSEE
T ss_pred             cCccEEEEEc-ChHHHHHHHHHHHHhCCCeEEEEEECCCH--HHHHHHHH---HcCCCeeeCCHHHHhcC----CCCCEE
Confidence            5799999999 6999987 578888999999999999753  22333331   45664 79999999984    789999


Q ss_pred             EEccCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCeEE
Q 031216          111 IDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMVS  159 (163)
Q Consensus       111 IDfT~p~~~~~~~~~al~~G~~vVigtt-g~~~e~~~~L~~~A~~~~Vv~  159 (163)
                      +.+|++..+.+++..|+++||||+++|| +.+.++.++|.++|++.++++
T Consensus        91 ~I~tP~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~~~~l  140 (350)
T 4had_A           91 YIPLPTSQHIEWSIKAADAGKHVVCEKPLALKAGDIDAVIAARDRNKVVV  140 (350)
T ss_dssp             EECSCGGGHHHHHHHHHHTTCEEEECSCCCSSGGGGHHHHHHHHHHTCCE
T ss_pred             EEeCCCchhHHHHHHHHhcCCEEEEeCCcccchhhHHHHHHHHHHcCCce
Confidence            9899999999999999999999999999 889999999999999988765

>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}

Probab=99.78  E-value=1.8e-18  Score=145.12  Aligned_cols=116  Identities=10%  Similarity=0.068  Sum_probs=96.4

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHh-------cCCcEEEEEEecCCCCcchhhhccCCCCCCc-ceeCCHHHHHhcccccC
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTK-------ARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI-PVMSDLTMVLGSISQSK  105 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~-------~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi-~v~~~l~ell~~~~~~~  105 (163)
                      +++||||+| +|+||+.|++.+..       .++++|++++|+..  ..+.++..   .+++ .+|+|++++++.    +
T Consensus        24 kkirvgiIG-~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~~--~~a~~~a~---~~g~~~~y~d~~ell~~----~   93 (393)
T 4fb5_A           24 KPLGIGLIG-TGYMGKCHALAWNAVKTVFGDVERPRLVHLAEANA--GLAEARAG---EFGFEKATADWRALIAD----P   93 (393)
T ss_dssp             CCCEEEEEC-CSHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC----TTHHHHHH---HHTCSEEESCHHHHHHC----T
T ss_pred             CCccEEEEc-CCHHHHHHHHHHHhhhhhhccCCCcEEEEEECCCH--HHHHHHHH---HhCCCeecCCHHHHhcC----C
Confidence            469999999 69999999987654       46889999999653  22233321   3455 479999999984    7


Q ss_pred             CccEEEEccCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCeEE
Q 031216          106 ARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMVS  159 (163)
Q Consensus       106 ~~DVVIDfT~p~~~~~~~~~al~~G~~vVigtt-g~~~e~~~~L~~~A~~~~Vv~  159 (163)
                      ++|+|+.+|++..+.+++..|+++||||+++|| +.+.++.++|.++|++.++++
T Consensus        94 ~iDaV~IatP~~~H~~~a~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~l  148 (393)
T 4fb5_A           94 EVDVVSVTTPNQFHAEMAIAALEAGKHVWCEKPMAPAYADAERMLATAERSGKVA  148 (393)
T ss_dssp             TCCEEEECSCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHSSSCE
T ss_pred             CCcEEEECCChHHHHHHHHHHHhcCCeEEEccCCcccHHHHHHhhhhHHhcCCcc
Confidence            899999899999999999999999999999999 899999999999999998765

>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}

Probab=99.73  E-value=2.7e-17  Score=139.09  Aligned_cols=114  Identities=17%  Similarity=0.108  Sum_probs=97.7

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHH-hcCCcEEEEEEecCCCCcchhhhccCCCCCC--cceeCCHHHHHhcccccCCccEE
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVT-KARGMEVAGAIDSHSVGEDIGMVCDMEQPLE--IPVMSDLTMVLGSISQSKARAVV  110 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~-~~~~~eLvgvid~~~~g~~~~~l~g~~~~~g--i~v~~~l~ell~~~~~~~~~DVV  110 (163)
                      +++||+|+| +|+||+.+++.+. ..++++|++++|+...  .+..+..   .++  +..|+|++++++.    .++|+|
T Consensus        22 ~~~rvgiIG-~G~~g~~~~~~l~~~~~~~~lvav~d~~~~--~~~~~a~---~~g~~~~~~~~~~~ll~~----~~~D~V   91 (357)
T 3ec7_A           22 MTLKAGIVG-IGMIGSDHLRRLANTVSGVEVVAVCDIVAG--RAQAALD---KYAIEAKDYNDYHDLIND----KDVEVV   91 (357)
T ss_dssp             CCEEEEEEC-CSHHHHHHHHHHHHTCTTEEEEEEECSSTT--HHHHHHH---HHTCCCEEESSHHHHHHC----TTCCEE
T ss_pred             CeeeEEEEC-CcHHHHHHHHHHHhhCCCcEEEEEEeCCHH--HHHHHHH---HhCCCCeeeCCHHHHhcC----CCCCEE
Confidence            468999999 6999999999998 7899999999996532  2223221   234  6789999999974    689999


Q ss_pred             EEccCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCe
Q 031216          111 IDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASM  157 (163)
Q Consensus       111 IDfT~p~~~~~~~~~al~~G~~vVigtt-g~~~e~~~~L~~~A~~~~V  157 (163)
                      +.+|++..+.+++..|+++|+||++++| +.+.++.++|.++|++.++
T Consensus        92 ~i~tp~~~h~~~~~~al~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g~  139 (357)
T 3ec7_A           92 IITASNEAHADVAVAALNANKYVFCEKPLAVTAADCQRVIEAEQKNGK  139 (357)
T ss_dssp             EECSCGGGHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHHTS
T ss_pred             EEcCCcHHHHHHHHHHHHCCCCEEeecCccCCHHHHHHHHHHHHHhCC
Confidence            9999999999999999999999999999 8899999999999999887

>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*

Probab=99.73  E-value=2.4e-17  Score=139.09  Aligned_cols=116  Identities=14%  Similarity=0.077  Sum_probs=99.8

Q ss_pred             CCeeEEEEcCCCHHHH-HHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEE
Q 031216           34 SNIKVIINGAVKEIGR-AAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~-~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVID  112 (163)
                      +++||+|+| +|+||+ .+++.+.+.++++|++++|+..  ..+..+..   .++++.++|++++++.    .++|+|+.
T Consensus        26 ~~~rigiIG-~G~~g~~~~~~~l~~~~~~~l~av~d~~~--~~~~~~a~---~~g~~~~~~~~~ll~~----~~~D~V~i   95 (350)
T 3rc1_A           26 NPIRVGVIG-CADIAWRRALPALEAEPLTEVTAIASRRW--DRAKRFTE---RFGGEPVEGYPALLER----DDVDAVYV   95 (350)
T ss_dssp             CCEEEEEES-CCHHHHHTHHHHHHHCTTEEEEEEEESSH--HHHHHHHH---HHCSEEEESHHHHHTC----TTCSEEEE
T ss_pred             CceEEEEEc-CcHHHHHHHHHHHHhCCCeEEEEEEcCCH--HHHHHHHH---HcCCCCcCCHHHHhcC----CCCCEEEE
Confidence            369999999 699998 7999999999999999999653  22233321   4577888999999974    68999999


Q ss_pred             ccCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCeEE
Q 031216          113 FTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMVS  159 (163)
Q Consensus       113 fT~p~~~~~~~~~al~~G~~vVigtt-g~~~e~~~~L~~~A~~~~Vv~  159 (163)
                      +|++..+.+++..|+++|+||+++|| +.+.++.++|.++|++.++++
T Consensus        96 ~tp~~~h~~~~~~al~aGk~Vl~EKP~a~~~~ea~~l~~~a~~~g~~~  143 (350)
T 3rc1_A           96 PLPAVLHAEWIDRALRAGKHVLAEKPLTTDRPQAERLFAVARERGLLL  143 (350)
T ss_dssp             CCCGGGHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHTTCCE
T ss_pred             CCCcHHHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHhCCEE
Confidence            99999999999999999999999999 889999999999999998865

>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A

Probab=99.72  E-value=4.8e-17  Score=136.87  Aligned_cols=117  Identities=24%  Similarity=0.214  Sum_probs=100.2

Q ss_pred             CCeeEEEEcCCCHHHH-HHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEE
Q 031216           34 SNIKVIINGAVKEIGR-AAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~-~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVID  112 (163)
                      +|+||+|+| +|+||+ .+++.+...++++|++++|+. ..++..+..+   ..++++|+|++++++.    .++|+|+.
T Consensus         1 M~~rvgiiG-~G~~g~~~~~~~l~~~~~~~l~av~d~~-~~~~~a~~~~---~~~~~~~~~~~~ll~~----~~~D~V~i   71 (349)
T 3i23_A            1 MTVKMGFIG-FGKSANRYHLPYVMIRETLEVKTIFDLH-VNEKAAAPFK---EKGVNFTADLNELLTD----PEIELITI   71 (349)
T ss_dssp             CCEEEEEEC-CSHHHHHTTHHHHTTCTTEEEEEEECTT-CCHHHHHHHH---TTTCEEESCTHHHHSC----TTCCEEEE
T ss_pred             CeeEEEEEc-cCHHHHHHHHHHHhhCCCeEEEEEECCC-HHHHHHHhhC---CCCCeEECCHHHHhcC----CCCCEEEE
Confidence            479999999 699998 799999889999999999976 3333333222   2467889999999974    68999999


Q ss_pred             ccCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCeEE
Q 031216          113 FTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMVS  159 (163)
Q Consensus       113 fT~p~~~~~~~~~al~~G~~vVigtt-g~~~e~~~~L~~~A~~~~Vv~  159 (163)
                      +|++..+.+++..|+++||||+++|| +.+.++.++|.++|++.++.+
T Consensus        72 ~tp~~~h~~~~~~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~g~~~  119 (349)
T 3i23_A           72 CTPAHTHYDLAKQAILAGKSVIVEKPFCDTLEHAEELFALGQEKGVVV  119 (349)
T ss_dssp             CSCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHTTCCE
T ss_pred             eCCcHHHHHHHHHHHHcCCEEEEECCCcCCHHHHHHHHHHHHHcCCeE
Confidence            99999999999999999999999999 889999999999999988755

>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}

Probab=99.72  E-value=8.4e-17  Score=134.22  Aligned_cols=116  Identities=16%  Similarity=0.172  Sum_probs=98.3

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcc-eeCCHHHHHhcccccCCccEEEE
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP-VMSDLTMVLGSISQSKARAVVID  112 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~-v~~~l~ell~~~~~~~~~DVVID  112 (163)
                      +|+||+|+| +|+||+.+++.+.+.++++|++++|+...  .+..+.   ..++++ .|+|++++++.    .++|+|+.
T Consensus         4 ~~~rigiiG-~G~ig~~~~~~l~~~~~~~~~av~d~~~~--~~~~~a---~~~~~~~~~~~~~~ll~~----~~~D~V~i   73 (329)
T 3evn_A            4 SKVRYGVVS-TAKVAPRFIEGVRLAGNGEVVAVSSRTLE--SAQAFA---NKYHLPKAYDKLEDMLAD----ESIDVIYV   73 (329)
T ss_dssp             -CEEEEEEB-CCTTHHHHHHHHHHHCSEEEEEEECSCSS--TTCC------CCCCSCEESCHHHHHTC----TTCCEEEE
T ss_pred             CceEEEEEe-chHHHHHHHHHHHhCCCcEEEEEEcCCHH--HHHHHH---HHcCCCcccCCHHHHhcC----CCCCEEEE
Confidence            469999999 59999999999999999999999996532  122222   245665 79999999974    68999999


Q ss_pred             ccCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCeEE
Q 031216          113 FTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMVS  159 (163)
Q Consensus       113 fT~p~~~~~~~~~al~~G~~vVigtt-g~~~e~~~~L~~~A~~~~Vv~  159 (163)
                      +|++..+.+++..|+++|+||++++| +.+.++.++|.++|++.++++
T Consensus        74 ~tp~~~h~~~~~~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~  121 (329)
T 3evn_A           74 ATINQDHYKVAKAALLAGKHVLVEKPFTLTYDQANELFALAESCNLFL  121 (329)
T ss_dssp             CSCGGGHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHHHHTTCCE
T ss_pred             CCCcHHHHHHHHHHHHCCCeEEEccCCcCCHHHHHHHHHHHHHcCCEE
Confidence            99999999999999999999999999 889999999999999988754

>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}

Probab=99.72  E-value=6.6e-17  Score=135.64  Aligned_cols=110  Identities=18%  Similarity=0.224  Sum_probs=97.4

Q ss_pred             CCeeEEEEcCCCHHHH-HHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEE
Q 031216           34 SNIKVIINGAVKEIGR-AAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~-~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVID  112 (163)
                      +++||+|+| +|+||+ .+++.+.+.++++|++++|+...            ..+++.|+|++++++.   .+++|+|+.
T Consensus        24 ~~~rvgiiG-~G~ig~~~~~~~l~~~~~~~lvav~d~~~~------------~~g~~~~~~~~~ll~~---~~~vD~V~i   87 (330)
T 4ew6_A           24 SPINLAIVG-VGKIVRDQHLPSIAKNANFKLVATASRHGT------------VEGVNSYTTIEAMLDA---EPSIDAVSL   87 (330)
T ss_dssp             CCEEEEEEC-CSHHHHHTHHHHHHHCTTEEEEEEECSSCC------------CTTSEEESSHHHHHHH---CTTCCEEEE
T ss_pred             CCceEEEEe-cCHHHHHHHHHHHHhCCCeEEEEEEeCChh------------hcCCCccCCHHHHHhC---CCCCCEEEE
Confidence            359999999 699998 79999999999999999997531            3578889999999972   157999999


Q ss_pred             ccCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCeEE
Q 031216          113 FTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMVS  159 (163)
Q Consensus       113 fT~p~~~~~~~~~al~~G~~vVigtt-g~~~e~~~~L~~~A~~~~Vv~  159 (163)
                      +|++..+.+++..|+++||||+++|| +.+.++.++|.++|++.++.+
T Consensus        88 ~tp~~~H~~~~~~al~aGkhVl~EKP~a~~~~e~~~l~~~a~~~g~~~  135 (330)
T 4ew6_A           88 CMPPQYRYEAAYKALVAGKHVFLEKPPGATLSEVADLEALANKQGASL  135 (330)
T ss_dssp             CSCHHHHHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTCCE
T ss_pred             eCCcHHHHHHHHHHHHcCCcEEEeCCCCCCHHHHHHHHHHHHhcCCeE
Confidence            99999999999999999999999999 789999999999999988754

>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}

Probab=99.71  E-value=6.4e-17  Score=136.87  Aligned_cols=115  Identities=17%  Similarity=0.172  Sum_probs=100.0

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEc
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDf  113 (163)
                      +++||+|+| +|+||+.+++.+.+.++++|++++|+...  .. +..   ...++++|+|++++++.    .++|+|+.+
T Consensus         4 ~~~~vgiiG-~G~~g~~~~~~l~~~~~~~l~av~d~~~~--~~-~~a---~~~g~~~~~~~~~ll~~----~~~D~V~i~   72 (359)
T 3e18_A            4 KKYQLVIVG-YGGMGSYHVTLASAADNLEVHGVFDILAE--KR-EAA---AQKGLKIYESYEAVLAD----EKVDAVLIA   72 (359)
T ss_dssp             CCEEEEEEC-CSHHHHHHHHHHHTSTTEEEEEEECSSHH--HH-HHH---HTTTCCBCSCHHHHHHC----TTCCEEEEC
T ss_pred             CcCcEEEEC-cCHHHHHHHHHHHhCCCcEEEEEEcCCHH--HH-HHH---HhcCCceeCCHHHHhcC----CCCCEEEEc
Confidence            369999999 69999999999999999999999996531  11 222   15678899999999974    789999999


Q ss_pred             cCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCeEE
Q 031216          114 TDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMVS  159 (163)
Q Consensus       114 T~p~~~~~~~~~al~~G~~vVigtt-g~~~e~~~~L~~~A~~~~Vv~  159 (163)
                      |++..+.+++..|+++|+||++++| +.+.++.++|.++|++.++++
T Consensus        73 tp~~~h~~~~~~al~aGkhVl~EKP~a~~~~ea~~l~~~a~~~g~~~  119 (359)
T 3e18_A           73 TPNDSHKELAISALEAGKHVVCEKPVTMTSEDLLAIMDVAKRVNKHF  119 (359)
T ss_dssp             SCGGGHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHHHHHTCCE
T ss_pred             CCcHHHHHHHHHHHHCCCCEEeeCCCcCCHHHHHHHHHHHHHhCCeE
Confidence            9999999999999999999999999 889999999999999988765

>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5

Probab=99.71  E-value=5.7e-17  Score=136.12  Aligned_cols=118  Identities=14%  Similarity=0.106  Sum_probs=99.1

Q ss_pred             CCCCeeEEEEcCCC-HHHHHHHHHHHhc-CCcEEEEEEecCCCCcchhhhccCCCCCCc-ceeCCHHHHHhcccccCCcc
Q 031216           32 PQSNIKVIINGAVK-EIGRAAVIAVTKA-RGMEVAGAIDSHSVGEDIGMVCDMEQPLEI-PVMSDLTMVLGSISQSKARA  108 (163)
Q Consensus        32 ~~~~irV~VvGa~G-~mG~~i~~~i~~~-~~~eLvgvid~~~~g~~~~~l~g~~~~~gi-~v~~~l~ell~~~~~~~~~D  108 (163)
                      +++++||+|+| +| .||+.+++.+.+. ++++|++++|+..  ..+..+..   .+++ ++|+|++++++.    +++|
T Consensus        15 ~~~~irvgiIG-~G~~~g~~~~~~l~~~~~~~~lvav~d~~~--~~~~~~a~---~~~~~~~~~~~~~ll~~----~~vD   84 (340)
T 1zh8_A           15 PLRKIRLGIVG-CGIAARELHLPALKNLSHLFEITAVTSRTR--SHAEEFAK---MVGNPAVFDSYEELLES----GLVD   84 (340)
T ss_dssp             -CCCEEEEEEC-CSHHHHHTHHHHHHTTTTTEEEEEEECSSH--HHHHHHHH---HHSSCEEESCHHHHHHS----SCCS
T ss_pred             CCCceeEEEEe-cCHHHHHHHHHHHHhCCCceEEEEEEcCCH--HHHHHHHH---HhCCCcccCCHHHHhcC----CCCC
Confidence            45679999999 59 8999999999988 8999999999643  12222221   3344 689999999974    6899


Q ss_pred             EEEEccCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCeEE
Q 031216          109 VVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMVS  159 (163)
Q Consensus       109 VVIDfT~p~~~~~~~~~al~~G~~vVigtt-g~~~e~~~~L~~~A~~~~Vv~  159 (163)
                      +|+.+|++..+.+++..|+++|+||++++| +++.++.++|.++|++.++++
T Consensus        85 ~V~i~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~  136 (340)
T 1zh8_A           85 AVDLTLPVELNLPFIEKALRKGVHVICEKPISTDVETGKKVVELSEKSEKTV  136 (340)
T ss_dssp             EEEECCCGGGHHHHHHHHHHTTCEEEEESSSSSSHHHHHHHHHHHHHCSSCE
T ss_pred             EEEEeCCchHHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCeE
Confidence            999999889999999999999999999999 789999999999999988754

>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}

Probab=99.71  E-value=2.9e-17  Score=140.65  Aligned_cols=116  Identities=14%  Similarity=0.107  Sum_probs=97.4

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhc--------CCcEEEEEEecCCCCcchhhhccCCCCCCc-ceeCCHHHHHhccccc
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKA--------RGMEVAGAIDSHSVGEDIGMVCDMEQPLEI-PVMSDLTMVLGSISQS  104 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~--------~~~eLvgvid~~~~g~~~~~l~g~~~~~gi-~v~~~l~ell~~~~~~  104 (163)
                      ++|||||+| +|+||+.|++.+.+.        ++++|++++|+..  ..+.++..   .+++ ++|+|++++++.    
T Consensus        25 ~klrvgiIG-~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~--~~a~~~a~---~~~~~~~y~d~~~ll~~----   94 (412)
T 4gqa_A           25 ARLNIGLIG-SGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQ--AMAERHAA---KLGAEKAYGDWRELVND----   94 (412)
T ss_dssp             CEEEEEEEC-CSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSH--HHHHHHHH---HHTCSEEESSHHHHHHC----
T ss_pred             ccceEEEEc-CcHHHHHHHHHHHhccccccccCCCeEEEEEEcCCH--HHHHHHHH---HcCCCeEECCHHHHhcC----
Confidence            569999999 699999999998765        4789999999653  22223221   3455 479999999984    


Q ss_pred             CCccEEEEccCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCeEE
Q 031216          105 KARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMVS  159 (163)
Q Consensus       105 ~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigtt-g~~~e~~~~L~~~A~~~~Vv~  159 (163)
                      +++|+|+.+|++..+.+++..|+++||||+++|| +.+.++.++|.++|++.++++
T Consensus        95 ~~vD~V~I~tp~~~H~~~~~~al~aGkhVl~EKP~a~~~~ea~~l~~~a~~~g~~~  150 (412)
T 4gqa_A           95 PQVDVVDITSPNHLHYTMAMAAIAAGKHVYCEKPLAVNEQQAQEMAQAARRAGVKT  150 (412)
T ss_dssp             TTCCEEEECSCGGGHHHHHHHHHHTTCEEEEESCSCSSHHHHHHHHHHHHHHTCCE
T ss_pred             CCCCEEEECCCcHHHHHHHHHHHHcCCCeEeecCCcCCHHHHHHHHHHHHHhCCee
Confidence            7899999899999999999999999999999999 889999999999999988754

>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}

Probab=99.71  E-value=1.4e-16  Score=134.03  Aligned_cols=115  Identities=24%  Similarity=0.308  Sum_probs=99.2

Q ss_pred             CCeeEEEEcCCCHHHHH-HHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEE
Q 031216           34 SNIKVIINGAVKEIGRA-AVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~-i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVID  112 (163)
                      +++||+|+| +|+||+. +++.+.+.++++|++++|+...  .+.+     ...++++|+|++++++.    .++|+|+.
T Consensus         6 ~~~rvgiiG-~G~~g~~~~~~~~~~~~~~~l~av~d~~~~--~~~~-----~~~~~~~~~~~~~ll~~----~~vD~V~i   73 (352)
T 3kux_A            6 DKIKVGLLG-YGYASKTFHAPLIMGTPGLELAGVSSSDAS--KVHA-----DWPAIPVVSDPQMLFND----PSIDLIVI   73 (352)
T ss_dssp             CCEEEEEEC-CSHHHHHTHHHHHHTSTTEEEEEEECSCHH--HHHT-----TCSSCCEESCHHHHHHC----SSCCEEEE
T ss_pred             CCceEEEEC-CCHHHHHHHHHHHhhCCCcEEEEEECCCHH--HHHh-----hCCCCceECCHHHHhcC----CCCCEEEE
Confidence            469999999 6999997 9999999999999999996531  1111     13467889999999984    68999999


Q ss_pred             ccCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCeEEc
Q 031216          113 FTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMVST  160 (163)
Q Consensus       113 fT~p~~~~~~~~~al~~G~~vVigtt-g~~~e~~~~L~~~A~~~~Vv~t  160 (163)
                      +|++..+.+++..|+++||||++++| +.+.++.++|.++|++.++++.
T Consensus        74 ~tp~~~H~~~~~~al~aGkhV~~EKPla~~~~e~~~l~~~a~~~g~~~~  122 (352)
T 3kux_A           74 PTPNDTHFPLAQSALAAGKHVVVDKPFTVTLSQANALKEHADDAGLLLS  122 (352)
T ss_dssp             CSCTTTHHHHHHHHHHTTCEEEECSSCCSCHHHHHHHHHHHHHTTCCEE
T ss_pred             eCChHHHHHHHHHHHHCCCcEEEECCCcCCHHHHHHHHHHHHHcCCeEE
Confidence            99889999999999999999999999 8999999999999999988653

>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}

Probab=99.71  E-value=7.8e-17  Score=134.19  Aligned_cols=116  Identities=13%  Similarity=0.139  Sum_probs=99.5

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEc
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDf  113 (163)
                      +|+||+|+| +|+||+.+++.+.+.++++|++++|+..  ..+..+..   ..+++ |+|++++++.    +++|+|+.+
T Consensus         2 m~~~vgiiG-~G~~g~~~~~~l~~~~~~~l~av~d~~~--~~~~~~~~---~~~~~-~~~~~~~l~~----~~~D~V~i~   70 (331)
T 4hkt_A            2 MTVRFGLLG-AGRIGKVHAKAVSGNADARLVAVADAFP--AAAEAIAG---AYGCE-VRTIDAIEAA----ADIDAVVIC   70 (331)
T ss_dssp             -CEEEEEEC-CSHHHHHHHHHHHHCTTEEEEEEECSSH--HHHHHHHH---HTTCE-ECCHHHHHHC----TTCCEEEEC
T ss_pred             CceEEEEEC-CCHHHHHHHHHHhhCCCcEEEEEECCCH--HHHHHHHH---HhCCC-cCCHHHHhcC----CCCCEEEEe
Confidence            479999999 5999999999999999999999999653  22233322   45777 9999999974    689999999


Q ss_pred             cCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCeEEc
Q 031216          114 TDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMVST  160 (163)
Q Consensus       114 T~p~~~~~~~~~al~~G~~vVigtt-g~~~e~~~~L~~~A~~~~Vv~t  160 (163)
                      |++..+.+++..++++|+||++++| +.+.++.++|.++|++.++.+.
T Consensus        71 tp~~~h~~~~~~al~~gk~v~~EKP~~~~~~~~~~l~~~a~~~g~~~~  118 (331)
T 4hkt_A           71 TPTDTHADLIERFARAGKAIFCEKPIDLDAERVRACLKVVSDTKAKLM  118 (331)
T ss_dssp             SCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHTTCCEE
T ss_pred             CCchhHHHHHHHHHHcCCcEEEecCCCCCHHHHHHHHHHHHHcCCeEE
Confidence            9999999999999999999999999 8999999999999999987653

>1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A*

Probab=99.71  E-value=1.5e-16  Score=131.60  Aligned_cols=113  Identities=18%  Similarity=0.221  Sum_probs=96.8

Q ss_pred             CCCCCeeEEEEcCCCHHHHHHHHHHHh---cCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCc
Q 031216           31 PPQSNIKVIINGAVKEIGRAAVIAVTK---ARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKAR  107 (163)
Q Consensus        31 ~~~~~irV~VvGa~G~mG~~i~~~i~~---~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~  107 (163)
                      ++++|+||+|+| +|.||+.+++.+..   .++++|++++|++...    +      ..+++ +.|++++++.    .++
T Consensus         3 ~~~~~~rvgiIG-~G~iG~~~~~~l~~~~~~~~~~lvav~d~~~~a----~------~~g~~-~~~~~ell~~----~~v   66 (294)
T 1lc0_A            3 TNSGKFGVVVVG-VGRAGSVRLRDLKDPRSAAFLNLIGFVSRRELG----S------LDEVR-QISLEDALRS----QEI   66 (294)
T ss_dssp             CCCCSEEEEEEC-CSHHHHHHHHHHTSHHHHTTEEEEEEECSSCCC----E------ETTEE-BCCHHHHHHC----SSE
T ss_pred             CCCCcceEEEEE-EcHHHHHHHHHHhccccCCCEEEEEEECchHHH----H------HcCCC-CCCHHHHhcC----CCC
Confidence            456789999999 59999999999876   6899999999964321    1      33555 5899999974    689


Q ss_pred             cEEEEccCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCeEE
Q 031216          108 AVVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMVS  159 (163)
Q Consensus       108 DVVIDfT~p~~~~~~~~~al~~G~~vVigtt-g~~~e~~~~L~~~A~~~~Vv~  159 (163)
                      |+|+.+|++..+.++++.|+++||||++++| ..+.++.++|.++|++.++++
T Consensus        67 D~V~i~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~  119 (294)
T 1lc0_A           67 DVAYICSESSSHEDYIRQFLQAGKHVLVEYPMTLSFAAAQELWELAAQKGRVL  119 (294)
T ss_dssp             EEEEECSCGGGHHHHHHHHHHTTCEEEEESCSCSCHHHHHHHHHHHHHTTCCE
T ss_pred             CEEEEeCCcHhHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHhCCEE
Confidence            9999999999999999999999999999999 789999999999999988754

>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343}

Probab=99.71  E-value=1.2e-16  Score=135.11  Aligned_cols=113  Identities=13%  Similarity=0.109  Sum_probs=98.7

Q ss_pred             CCeeEEEEcCCCHHHHH-HHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCC-CcceeCCHHHHHhcccccCCccEEE
Q 031216           34 SNIKVIINGAVKEIGRA-AVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPL-EIPVMSDLTMVLGSISQSKARAVVI  111 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~-i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~-gi~v~~~l~ell~~~~~~~~~DVVI  111 (163)
                      +|+||+|+| +|+||+. +++.+...++++|++++|+...  ...+      .+ ++++|+|++++++.    .++|+|+
T Consensus         4 ~~~rvgiiG-~G~~g~~~~~~~l~~~~~~~l~av~d~~~~--~~~~------~~~~~~~~~~~~~ll~~----~~vD~V~   70 (362)
T 3fhl_A            4 EIIKTGLAA-FGMSGQVFHAPFISTNPHFELYKIVERSKE--LSKE------RYPQASIVRSFKELTED----PEIDLIV   70 (362)
T ss_dssp             CCEEEEESC-CSHHHHHTTHHHHHHCTTEEEEEEECSSCC--GGGT------TCTTSEEESCSHHHHTC----TTCCEEE
T ss_pred             CceEEEEEC-CCHHHHHHHHHHHhhCCCeEEEEEEcCCHH--HHHH------hCCCCceECCHHHHhcC----CCCCEEE
Confidence            579999999 6999997 8999999999999999997532  2221      23 67889999999984    6799999


Q ss_pred             EccCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCeEE
Q 031216          112 DFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMVS  159 (163)
Q Consensus       112 DfT~p~~~~~~~~~al~~G~~vVigtt-g~~~e~~~~L~~~A~~~~Vv~  159 (163)
                      .+|++..+.+++..|+++||||+++|| +.+.++.++|.++|++.++++
T Consensus        71 i~tp~~~H~~~~~~al~aGkhVl~EKP~a~~~~ea~~l~~~a~~~g~~~  119 (362)
T 3fhl_A           71 VNTPDNTHYEYAGMALEAGKNVVVEKPFTSTTKQGEELIALAKKKGLML  119 (362)
T ss_dssp             ECSCGGGHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHHHHHTCCE
T ss_pred             EeCChHHHHHHHHHHHHCCCeEEEecCCCCCHHHHHHHHHHHHHcCCEE
Confidence            999999999999999999999999999 899999999999999988765

>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}

Probab=99.71  E-value=1.1e-16  Score=133.95  Aligned_cols=116  Identities=14%  Similarity=0.167  Sum_probs=100.4

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEc
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDf  113 (163)
                      +|+||+|+| +|+||+.+++.+.+.++++|++++|+..  ..+..+..   ..++++|+|++++++.    .++|+|+.+
T Consensus         3 ~~~rvgiiG-~G~~g~~~~~~l~~~~~~~l~av~d~~~--~~~~~~a~---~~g~~~~~~~~~~l~~----~~~D~V~i~   72 (344)
T 3euw_A            3 LTLRIALFG-AGRIGHVHAANIAANPDLELVVIADPFI--EGAQRLAE---ANGAEAVASPDEVFAR----DDIDGIVIG   72 (344)
T ss_dssp             CCEEEEEEC-CSHHHHHHHHHHHHCTTEEEEEEECSSH--HHHHHHHH---TTTCEEESSHHHHTTC----SCCCEEEEC
T ss_pred             CceEEEEEC-CcHHHHHHHHHHHhCCCcEEEEEECCCH--HHHHHHHH---HcCCceeCCHHHHhcC----CCCCEEEEe
Confidence            479999999 5999999999999999999999999653  22233332   4567889999999974    689999999


Q ss_pred             cCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCeEE
Q 031216          114 TDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMVS  159 (163)
Q Consensus       114 T~p~~~~~~~~~al~~G~~vVigtt-g~~~e~~~~L~~~A~~~~Vv~  159 (163)
                      |++..+.+++..|+++|+||++++| +.+.++..+|.++|++.++++
T Consensus        73 tp~~~h~~~~~~al~~gk~v~~EKP~~~~~~~~~~l~~~a~~~g~~~  119 (344)
T 3euw_A           73 SPTSTHVDLITRAVERGIPALCEKPIDLDIEMVRACKEKIGDGASKV  119 (344)
T ss_dssp             SCGGGHHHHHHHHHHTTCCEEECSCSCSCHHHHHHHHHHHGGGGGGE
T ss_pred             CCchhhHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHHhcCCeE
Confidence            9999999999999999999999999 889999999999999988754

>2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A

Probab=99.70  E-value=1.1e-16  Score=141.05  Aligned_cols=142  Identities=13%  Similarity=0.163  Sum_probs=112.3

Q ss_pred             eecccccccccccceeeeccCCCC--------CCCeeEEEEcCC---CHHHHHHHHHHHhc-CCcEEEEEEecCCCCcch
Q 031216            9 HCRMHHISQNVKAKRFISCSTNPP--------QSNIKVIINGAV---KEIGRAAVIAVTKA-RGMEVAGAIDSHSVGEDI   76 (163)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~--------~~~irV~VvGa~---G~mG~~i~~~i~~~-~~~eLvgvid~~~~g~~~   76 (163)
                      |-.-||-|.|+.+.+-...-.++.        .+++||+|+|+.   |.||+.+++.+... ++++|++++|+..  ..+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~irvgiIG~g~~GG~~g~~h~~~l~~~~~~~~lvav~d~~~--~~a   82 (479)
T 2nvw_A            5 HHHHHHSSENLYFQGHMLANNNKRSKLSTVPSSRPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTL--KSS   82 (479)
T ss_dssp             ---CTTCGGGTGGGTCCCCCCCTTSGGGSSGGGCCEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCH--HHH
T ss_pred             cccccccchhHHHHHHHHhhccccccCCCCCCCCcCEEEEEcccCCCCHHHHHHHHHHHhcCCCeEEEEEEeCCH--HHH
Confidence            445688999998877655443333        346999999942   99999999999988 9999999999653  122


Q ss_pred             hhhccCCCCCCcc---eeCCHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcC------CcEEEeCC-CCCHHHHH
Q 031216           77 GMVCDMEQPLEIP---VMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFG------MRSVVYVP-HIQLETVS  146 (163)
Q Consensus        77 ~~l~g~~~~~gi~---v~~~l~ell~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G------~~vVigtt-g~~~e~~~  146 (163)
                      ..+..   .++++   +|+|++++++.    .++|+|+.+|++..+.+++..|+++|      +||++++| +.+.++.+
T Consensus        83 ~~~a~---~~g~~~~~~~~d~~ell~~----~~vD~V~I~tp~~~H~~~~~~al~aG~~~~~~khVl~EKPla~~~~ea~  155 (479)
T 2nvw_A           83 LQTIE---QLQLKHATGFDSLESFAQY----KDIDMIVVSVKVPEHYEVVKNILEHSSQNLNLRYLYVEWALAASVQQAE  155 (479)
T ss_dssp             HHHHH---HTTCTTCEEESCHHHHHHC----TTCSEEEECSCHHHHHHHHHHHHHHSSSCSSCCEEEEESSSSSSHHHHH
T ss_pred             HHHHH---HcCCCcceeeCCHHHHhcC----CCCCEEEEcCCcHHHHHHHHHHHHCCCCcCCceeEEEeCCCcCCHHHHH
Confidence            22221   33444   89999999974    68999998998889999999999999      99999999 78999999


Q ss_pred             HHHHHhhhcC-eEE
Q 031216          147 ALSAFCDKAS-MVS  159 (163)
Q Consensus       147 ~L~~~A~~~~-Vv~  159 (163)
                      +|.++|++.+ +++
T Consensus       156 ~l~~~a~~~g~~~~  169 (479)
T 2nvw_A          156 ELYSISQQRANLQT  169 (479)
T ss_dssp             HHHHHHHTCTTCEE
T ss_pred             HHHHHHHHcCCeEE
Confidence            9999999998 543

>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}

Probab=99.70  E-value=7.8e-17  Score=135.49  Aligned_cols=116  Identities=11%  Similarity=0.105  Sum_probs=99.5

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEc
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDf  113 (163)
                      +++||+|+| +|+||+.+++.+.+.++++|++++|+..  ..+..+..   .++++.|+|++++++.    .++|+|+.+
T Consensus         4 ~~~~vgiiG-~G~~g~~~~~~l~~~~~~~lvav~d~~~--~~~~~~~~---~~g~~~~~~~~~~l~~----~~~D~V~i~   73 (354)
T 3db2_A            4 NPVGVAAIG-LGRWAYVMADAYTKSEKLKLVTCYSRTE--DKREKFGK---RYNCAGDATMEALLAR----EDVEMVIIT   73 (354)
T ss_dssp             CCEEEEEEC-CSHHHHHHHHHHTTCSSEEEEEEECSSH--HHHHHHHH---HHTCCCCSSHHHHHHC----SSCCEEEEC
T ss_pred             CcceEEEEc-cCHHHHHHHHHHHhCCCcEEEEEECCCH--HHHHHHHH---HcCCCCcCCHHHHhcC----CCCCEEEEe
Confidence            468999999 6999999999999999999999999643  22223221   3467779999999974    689999999


Q ss_pred             cCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCeEE
Q 031216          114 TDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMVS  159 (163)
Q Consensus       114 T~p~~~~~~~~~al~~G~~vVigtt-g~~~e~~~~L~~~A~~~~Vv~  159 (163)
                      |++..+.+++..++++|+||++++| +.+.++.++|.++|++.++.+
T Consensus        74 tp~~~h~~~~~~al~~gk~vl~EKP~~~~~~~~~~l~~~a~~~~~~~  120 (354)
T 3db2_A           74 VPNDKHAEVIEQCARSGKHIYVEKPISVSLDHAQRIDQVIKETGVKF  120 (354)
T ss_dssp             SCTTSHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHHCCCE
T ss_pred             CChHHHHHHHHHHHHcCCEEEEccCCCCCHHHHHHHHHHHHHcCCeE
Confidence            9999999999999999999999999 899999999999999988754

>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp}

Probab=99.70  E-value=2.1e-16  Score=133.85  Aligned_cols=116  Identities=14%  Similarity=0.190  Sum_probs=98.7

Q ss_pred             CCCeeEEEEcCCCHHHHH-HHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEE
Q 031216           33 QSNIKVIINGAVKEIGRA-AVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI  111 (163)
Q Consensus        33 ~~~irV~VvGa~G~mG~~-i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVI  111 (163)
                      ++|+||+|+| +|+||+. +++.+...++++|++++|+..  ..+.+.     ..++++|+|++++++.    .++|+|+
T Consensus         5 ~~~~rvgiiG-~G~~g~~~~~~~l~~~~~~~l~av~d~~~--~~~~~~-----~~~~~~~~~~~~ll~~----~~~D~V~   72 (364)
T 3e82_A            5 NNTINIALIG-YGFVGKTFHAPLIRSVPGLNLAFVASRDE--EKVKRD-----LPDVTVIASPEAAVQH----PDVDLVV   72 (364)
T ss_dssp             --CEEEEEEC-CSHHHHHTHHHHHHTSTTEEEEEEECSCH--HHHHHH-----CTTSEEESCHHHHHTC----TTCSEEE
T ss_pred             CCcceEEEEC-CCHHHHHHHHHHHhhCCCeEEEEEEcCCH--HHHHhh-----CCCCcEECCHHHHhcC----CCCCEEE
Confidence            4679999999 5999996 899999999999999999753  122221     2367889999999974    7899999


Q ss_pred             EccCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCeEEc
Q 031216          112 DFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMVST  160 (163)
Q Consensus       112 DfT~p~~~~~~~~~al~~G~~vVigtt-g~~~e~~~~L~~~A~~~~Vv~t  160 (163)
                      .+|++..+.+++..|+++||||+++|| +.+.++.++|.++|++.++++.
T Consensus        73 i~tp~~~H~~~~~~al~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g~~~~  122 (364)
T 3e82_A           73 IASPNATHAPLARLALNAGKHVVVDKPFTLDMQEARELIALAEEKQRLLS  122 (364)
T ss_dssp             ECSCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHTTCCEE
T ss_pred             EeCChHHHHHHHHHHHHCCCcEEEeCCCcCCHHHHHHHHHHHHHhCCeEE
Confidence            999999999999999999999999999 8899999999999999987653

>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}

Probab=99.70  E-value=1.1e-16  Score=133.68  Aligned_cols=116  Identities=16%  Similarity=0.143  Sum_probs=99.8

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCc-ceeCCHHHHHhcccccCCccEEEE
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI-PVMSDLTMVLGSISQSKARAVVID  112 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi-~v~~~l~ell~~~~~~~~~DVVID  112 (163)
                      +++||+|+| +|+||+.+++.+.+.++++|++++|+..  ..+..+..   .+++ .+|+|++++++.    .++|+|+.
T Consensus         4 ~~~~igiiG-~G~~g~~~~~~l~~~~~~~l~av~d~~~--~~~~~~~~---~~~~~~~~~~~~~ll~~----~~~D~V~i   73 (330)
T 3e9m_A            4 DKIRYGIMS-TAQIVPRFVAGLRESAQAEVRGIASRRL--ENAQKMAK---ELAIPVAYGSYEELCKD----ETIDIIYI   73 (330)
T ss_dssp             CCEEEEECS-CCTTHHHHHHHHHHSSSEEEEEEBCSSS--HHHHHHHH---HTTCCCCBSSHHHHHHC----TTCSEEEE
T ss_pred             CeEEEEEEC-chHHHHHHHHHHHhCCCcEEEEEEeCCH--HHHHHHHH---HcCCCceeCCHHHHhcC----CCCCEEEE
Confidence            469999999 5999999999999999999999999653  22333321   3456 478999999974    68999999


Q ss_pred             ccCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCeEE
Q 031216          113 FTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMVS  159 (163)
Q Consensus       113 fT~p~~~~~~~~~al~~G~~vVigtt-g~~~e~~~~L~~~A~~~~Vv~  159 (163)
                      +|++..+.+++..|+++|+||++++| +.+.++.++|.++|++.++++
T Consensus        74 ~tp~~~h~~~~~~al~~gk~vl~EKP~~~~~~e~~~l~~~a~~~g~~~  121 (330)
T 3e9m_A           74 PTYNQGHYSAAKLALSQGKPVLLEKPFTLNAAEAEELFAIAQEQGVFL  121 (330)
T ss_dssp             CCCGGGHHHHHHHHHHTTCCEEECSSCCSSHHHHHHHHHHHHHTTCCE
T ss_pred             cCCCHHHHHHHHHHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHcCCeE
Confidence            99999999999999999999999999 889999999999999998765

>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X

Probab=99.69  E-value=1.3e-16  Score=133.09  Aligned_cols=116  Identities=10%  Similarity=0.007  Sum_probs=97.2

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcC--CcEEEEEEecCCCCcchhhhccCCCCCCc-ceeCCHHHHHhcccccCCccEE
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKAR--GMEVAGAIDSHSVGEDIGMVCDMEQPLEI-PVMSDLTMVLGSISQSKARAVV  110 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~--~~eLvgvid~~~~g~~~~~l~g~~~~~gi-~v~~~l~ell~~~~~~~~~DVV  110 (163)
                      +|+||+|+| +|+||+.+++.+...+  +++|++++|++.  ..+.++..   .+++ .+|+|++++++.    .++|+|
T Consensus         1 M~~rigiiG-~G~ig~~~~~~l~~~~~~~~~l~av~d~~~--~~a~~~a~---~~~~~~~~~~~~~ll~~----~~vD~V   70 (334)
T 3ohs_X            1 MALRWGIVS-VGLISSDFTAVLQTLPRSEHQVVAVAARDL--SRAKEFAQ---KHDIPKAYGSYEELAKD----PNVEVA   70 (334)
T ss_dssp             -CEEEEEEC-CSHHHHHHHHHHTTSCTTTEEEEEEECSSH--HHHHHHHH---HHTCSCEESSHHHHHHC----TTCCEE
T ss_pred             CccEEEEEC-chHHHHHHHHHHHhCCCCCeEEEEEEcCCH--HHHHHHHH---HcCCCcccCCHHHHhcC----CCCCEE
Confidence            368999999 6999999999998877  479999999653  22233321   3455 479999999974    789999


Q ss_pred             EEccCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCeEE
Q 031216          111 IDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMVS  159 (163)
Q Consensus       111 IDfT~p~~~~~~~~~al~~G~~vVigtt-g~~~e~~~~L~~~A~~~~Vv~  159 (163)
                      +.+|++..+.+++..|+++||||+++|| +.+.++.++|.++|++.++++
T Consensus        71 ~i~tp~~~H~~~~~~al~~GkhVl~EKP~a~~~~e~~~l~~~a~~~~~~~  120 (334)
T 3ohs_X           71 YVGTQHPQHKAAVMLCLAAGKAVLCEKPMGVNAAEVREMVTEARSRGLFL  120 (334)
T ss_dssp             EECCCGGGHHHHHHHHHHTTCEEEEESSSSSSHHHHHHHHHHHHHTTCCE
T ss_pred             EECCCcHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHHHHHhCCEE
Confidence            9999999999999999999999999999 889999999999999988765

>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}

Probab=99.69  E-value=8.6e-17  Score=137.16  Aligned_cols=116  Identities=16%  Similarity=0.160  Sum_probs=100.2

Q ss_pred             CCeeEEEEcCCC-HHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEE
Q 031216           34 SNIKVIINGAVK-EIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (163)
Q Consensus        34 ~~irV~VvGa~G-~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVID  112 (163)
                      +++||+|+| +| .||+.+++.+...++++|++++|+..  ....++..   .+++++|+|++++++.    .++|+|+.
T Consensus         1 ~~~rigiiG-~G~~~~~~~~~~l~~~~~~~l~av~d~~~--~~~~~~a~---~~g~~~~~~~~ell~~----~~vD~V~i   70 (387)
T 3moi_A            1 MKIRFGICG-LGFAGSVLMAPAMRHHPDAQIVAACDPNE--DVRERFGK---EYGIPVFATLAEMMQH----VQMDAVYI   70 (387)
T ss_dssp             CCEEEEEEC-CSHHHHTTHHHHHHHCTTEEEEEEECSCH--HHHHHHHH---HHTCCEESSHHHHHHH----SCCSEEEE
T ss_pred             CceEEEEEe-CCHHHHHHHHHHHHhCCCeEEEEEEeCCH--HHHHHHHH---HcCCCeECCHHHHHcC----CCCCEEEE
Confidence            469999999 59 99999999999999999999999643  12223321   4578899999999984    68999999


Q ss_pred             ccCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCeEE
Q 031216          113 FTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMVS  159 (163)
Q Consensus       113 fT~p~~~~~~~~~al~~G~~vVigtt-g~~~e~~~~L~~~A~~~~Vv~  159 (163)
                      +|+|..+.+++..|+++||||++++| ..+.++..+|.++|++.++.+
T Consensus        71 ~tp~~~H~~~~~~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~g~~~  118 (387)
T 3moi_A           71 ASPHQFHCEHVVQASEQGLHIIVEKPLTLSRDEADRMIEAVERAGVHL  118 (387)
T ss_dssp             CSCGGGHHHHHHHHHHTTCEEEECSCCCSCHHHHHHHHHHHHHHTCCE
T ss_pred             cCCcHHHHHHHHHHHHCCCceeeeCCccCCHHHHHHHHHHHHHhCCeE
Confidence            99999999999999999999999999 889999999999999988754

>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*

Probab=99.69  E-value=1.1e-16  Score=134.47  Aligned_cols=118  Identities=16%  Similarity=0.128  Sum_probs=100.8

Q ss_pred             CCCCeeEEEEcCCCHHHHHHHHHHHhc-CCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEE
Q 031216           32 PQSNIKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVV  110 (163)
Q Consensus        32 ~~~~irV~VvGa~G~mG~~i~~~i~~~-~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVV  110 (163)
                      +.+|+||+|+| +|+||+.+++.+.+. ++++|++++|+..  ..+..+..   ..++++|+|++++++.    .++|+|
T Consensus        10 ~~~~~rvgiiG-~G~~g~~~~~~l~~~~~~~~lvav~d~~~--~~~~~~~~---~~~~~~~~~~~~ll~~----~~~D~V   79 (354)
T 3q2i_A           10 TDRKIRFALVG-CGRIANNHFGALEKHADRAELIDVCDIDP--AALKAAVE---RTGARGHASLTDMLAQ----TDADIV   79 (354)
T ss_dssp             CSSCEEEEEEC-CSTTHHHHHHHHHHTTTTEEEEEEECSSH--HHHHHHHH---HHCCEEESCHHHHHHH----CCCSEE
T ss_pred             CCCcceEEEEc-CcHHHHHHHHHHHhCCCCeEEEEEEcCCH--HHHHHHHH---HcCCceeCCHHHHhcC----CCCCEE
Confidence            34679999999 699999999999988 8999999999653  22223321   3467889999999974    689999


Q ss_pred             EEccCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCeEE
Q 031216          111 IDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMVS  159 (163)
Q Consensus       111 IDfT~p~~~~~~~~~al~~G~~vVigtt-g~~~e~~~~L~~~A~~~~Vv~  159 (163)
                      +.+|+|..+.+++..++++|+||++++| +.+.++..+|.++|++.++.+
T Consensus        80 ~i~tp~~~h~~~~~~al~~gk~v~~EKP~a~~~~~~~~l~~~a~~~g~~~  129 (354)
T 3q2i_A           80 ILTTPSGLHPTQSIECSEAGFHVMTEKPMATRWEDGLEMVKAADKAKKHL  129 (354)
T ss_dssp             EECSCGGGHHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTCCE
T ss_pred             EECCCcHHHHHHHHHHHHCCCCEEEeCCCcCCHHHHHHHHHHHHHhCCeE
Confidence            9999999999999999999999999999 889999999999999988754

>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*

Probab=99.69  E-value=1.8e-16  Score=132.73  Aligned_cols=114  Identities=16%  Similarity=0.138  Sum_probs=97.5

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHH-hcCCcEEEEEEecCCCCcchhhhccCCCCCC--cceeCCHHHHHhcccccCCccEE
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVT-KARGMEVAGAIDSHSVGEDIGMVCDMEQPLE--IPVMSDLTMVLGSISQSKARAVV  110 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~-~~~~~eLvgvid~~~~g~~~~~l~g~~~~~g--i~v~~~l~ell~~~~~~~~~DVV  110 (163)
                      +|+||+|+| +|+||+.+++.+. ..++++|++++|+..  ..+..+..   .++  +.+|+|++++++.    .++|+|
T Consensus         1 M~~rigiIG-~G~~g~~~~~~l~~~~~~~~l~av~d~~~--~~~~~~~~---~~g~~~~~~~~~~~ll~~----~~~D~V   70 (344)
T 3mz0_A            1 MSLRIGVIG-TGAIGKEHINRITNKLSGAEIVAVTDVNQ--EAAQKVVE---QYQLNATVYPNDDSLLAD----ENVDAV   70 (344)
T ss_dssp             CCEEEEEEC-CSHHHHHHHHHHHHTCSSEEEEEEECSSH--HHHHHHHH---HTTCCCEEESSHHHHHHC----TTCCEE
T ss_pred             CeEEEEEEC-ccHHHHHHHHHHHhhCCCcEEEEEEcCCH--HHHHHHHH---HhCCCCeeeCCHHHHhcC----CCCCEE
Confidence            368999999 5999999999998 789999999999653  12222221   344  6789999999984    679999


Q ss_pred             EEccCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCe
Q 031216          111 IDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASM  157 (163)
Q Consensus       111 IDfT~p~~~~~~~~~al~~G~~vVigtt-g~~~e~~~~L~~~A~~~~V  157 (163)
                      +.+|++..+.+++..++++|+||++++| +.+.++.++|.++|++.++
T Consensus        71 ~i~tp~~~h~~~~~~al~~Gk~vl~EKP~a~~~~e~~~l~~~a~~~g~  118 (344)
T 3mz0_A           71 LVTSWGPAHESSVLKAIKAQKYVFCEKPLATTAEGCMRIVEEEIKVGK  118 (344)
T ss_dssp             EECSCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHHSS
T ss_pred             EECCCchhHHHHHHHHHHCCCcEEEcCCCCCCHHHHHHHHHHHHHHCC
Confidence            9999999999999999999999999999 8899999999999999887

>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}

Probab=99.69  E-value=1.3e-16  Score=133.59  Aligned_cols=116  Identities=12%  Similarity=0.135  Sum_probs=98.3

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcc-eeCCHHHHHhcccccCCccEEEE
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP-VMSDLTMVLGSISQSKARAVVID  112 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~-v~~~l~ell~~~~~~~~~DVVID  112 (163)
                      +|+||+|+| +|+||+.+++.+.+.++++|++++|+..  ..+..+..   .++++ +|+|++++++.    .++|+|+.
T Consensus         1 M~~rvgiIG-~G~~g~~~~~~l~~~~~~~l~av~d~~~--~~~~~~~~---~~~~~~~~~~~~~ll~~----~~~D~V~i   70 (344)
T 3ezy_A            1 MSLRIGVIG-LGRIGTIHAENLKMIDDAILYAISDVRE--DRLREMKE---KLGVEKAYKDPHELIED----PNVDAVLV   70 (344)
T ss_dssp             -CEEEEEEC-CSHHHHHHHHHGGGSTTEEEEEEECSCH--HHHHHHHH---HHTCSEEESSHHHHHHC----TTCCEEEE
T ss_pred             CeeEEEEEc-CCHHHHHHHHHHHhCCCcEEEEEECCCH--HHHHHHHH---HhCCCceeCCHHHHhcC----CCCCEEEE
Confidence            368999999 6999999999999999999999999653  12222221   34554 79999999974    68999999


Q ss_pred             ccCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCeEE
Q 031216          113 FTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMVS  159 (163)
Q Consensus       113 fT~p~~~~~~~~~al~~G~~vVigtt-g~~~e~~~~L~~~A~~~~Vv~  159 (163)
                      +|++..+.+++..++++|+||++++| +.+.++..+|.++|++.++.+
T Consensus        71 ~tp~~~h~~~~~~al~~gk~v~~EKP~~~~~~e~~~l~~~a~~~g~~~  118 (344)
T 3ezy_A           71 CSSTNTHSELVIACAKAKKHVFCEKPLSLNLADVDRMIEETKKADVIL  118 (344)
T ss_dssp             CSCGGGHHHHHHHHHHTTCEEEEESCSCSCHHHHHHHHHHHHHHTCCE
T ss_pred             cCCCcchHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhCCcE
Confidence            99999999999999999999999999 899999999999999988754

>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A

Probab=99.69  E-value=1.4e-16  Score=134.35  Aligned_cols=121  Identities=12%  Similarity=0.168  Sum_probs=97.7

Q ss_pred             CCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC-CcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEE
Q 031216           32 PQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-GEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVV  110 (163)
Q Consensus        32 ~~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~-g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVV  110 (163)
                      ..+++||+|+| +|+||+.+++.+...++++|++++|+... .+...+..+.  +..+.+|+|++++++.    .++|+|
T Consensus         3 ~~~~~~vgiiG-~G~ig~~~~~~l~~~~~~~lv~v~d~~~~~~~~~a~~~~~--~~~~~~~~~~~~ll~~----~~~D~V   75 (362)
T 1ydw_A            3 TETQIRIGVMG-CADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNY--PESTKIHGSYESLLED----PEIDAL   75 (362)
T ss_dssp             ---CEEEEEES-CCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTC--CTTCEEESSHHHHHHC----TTCCEE
T ss_pred             CCCceEEEEEC-chHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCC--CCCCeeeCCHHHHhcC----CCCCEE
Confidence            34679999999 59999999999999999999999996431 1122222221  1135678999999973    689999


Q ss_pred             EEccCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCeEE
Q 031216          111 IDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMVS  159 (163)
Q Consensus       111 IDfT~p~~~~~~~~~al~~G~~vVigtt-g~~~e~~~~L~~~A~~~~Vv~  159 (163)
                      +.+|++..+.+++..|+++|+||++++| +++.++.++|.++|++.++++
T Consensus        76 ~i~tp~~~h~~~~~~al~aGk~V~~EKP~a~~~~e~~~l~~~a~~~g~~~  125 (362)
T 1ydw_A           76 YVPLPTSLHVEWAIKAAEKGKHILLEKPVAMNVTEFDKIVDACEANGVQI  125 (362)
T ss_dssp             EECCCGGGHHHHHHHHHTTTCEEEECSSCSSSHHHHHHHHHHHHTTTCCE
T ss_pred             EEcCChHHHHHHHHHHHHCCCeEEEecCCcCCHHHHHHHHHHHHHcCCEE
Confidence            9999999999999999999999999998 789999999999999998765

>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*

Probab=99.69  E-value=4.1e-16  Score=130.02  Aligned_cols=116  Identities=11%  Similarity=0.108  Sum_probs=96.6

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHH--------hcccccC
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVL--------GSISQSK  105 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell--------~~~~~~~  105 (163)
                      .|+||+|+|+.|+||+.+++.+... +.+|++++|+...-.   ....  ...++.+|+|+++++        +    +.
T Consensus         2 ~mirvgiIG~gG~i~~~h~~~l~~~-~~~lvav~d~~~~~~---~~~~--~~~~~~~~~~~~~ll~~~~~l~~~----~~   71 (312)
T 3o9z_A            2 HMTRFALTGLAGYIAPRHLKAIKEV-GGVLVASLDPATNVG---LVDS--FFPEAEFFTEPEAFEAYLEDLRDR----GE   71 (312)
T ss_dssp             -CCEEEEECTTSSSHHHHHHHHHHT-TCEEEEEECSSCCCG---GGGG--TCTTCEEESCHHHHHHHHHHHHHT----TC
T ss_pred             CceEEEEECCChHHHHHHHHHHHhC-CCEEEEEEcCCHHHH---HHHh--hCCCCceeCCHHHHHHHhhhhccc----CC
Confidence            4799999995478999999999875 799999999654211   1111  123678899999998        4    37


Q ss_pred             CccEEEEccCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCeEE
Q 031216          106 ARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMVS  159 (163)
Q Consensus       106 ~~DVVIDfT~p~~~~~~~~~al~~G~~vVigtt-g~~~e~~~~L~~~A~~~~Vv~  159 (163)
                      ++|+|+.+|++..+.++++.|+++||||+++|| +.+.++.++|.++|++.++++
T Consensus        72 ~vD~V~I~tP~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~  126 (312)
T 3o9z_A           72 GVDYLSIASPNHLHYPQIRMALRLGANALSEKPLVLWPEEIARLKELEARTGRRV  126 (312)
T ss_dssp             CCSEEEECSCGGGHHHHHHHHHHTTCEEEECSSSCSCHHHHHHHHHHHHHHCCCE
T ss_pred             CCcEEEECCCchhhHHHHHHHHHCCCeEEEECCCCCCHHHHHHHHHHHHHcCCEE
Confidence            999999999999999999999999999999999 889999999999999988743

>3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12}

Probab=99.69  E-value=2.4e-16  Score=132.27  Aligned_cols=116  Identities=19%  Similarity=0.171  Sum_probs=96.6

Q ss_pred             CCeeEEEEcCCCHHHHH-HHH-HHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEE
Q 031216           34 SNIKVIINGAVKEIGRA-AVI-AVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI  111 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~-i~~-~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVI  111 (163)
                      +|+||+|+| +|+||+. +++ .+...++++|++++|+...  .. +...  ...++++|+|++++++.    .++|+|+
T Consensus         1 m~~rvgiiG-~G~~g~~~~~~~~~~~~~~~~l~av~d~~~~--~~-~~~~--~~~~~~~~~~~~~ll~~----~~~D~V~   70 (345)
T 3f4l_A            1 MVINCAFIG-FGKSTTRYHLPYVLNRKDSWHVAHIFRRHAK--PE-EQAP--IYSHIHFTSDLDEVLND----PDVKLVV   70 (345)
T ss_dssp             -CEEEEEEC-CSHHHHHHTHHHHTTCTTTEEEEEEECSSCC--GG-GGSG--GGTTCEEESCTHHHHTC----TTEEEEE
T ss_pred             CceEEEEEe-cCHHHHHHHHHHHHhcCCCeEEEEEEcCCHh--HH-HHHH--hcCCCceECCHHHHhcC----CCCCEEE
Confidence            479999999 6999985 888 5677899999999997532  11 1111  13467899999999974    6799999


Q ss_pred             EccCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCeEE
Q 031216          112 DFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMVS  159 (163)
Q Consensus       112 DfT~p~~~~~~~~~al~~G~~vVigtt-g~~~e~~~~L~~~A~~~~Vv~  159 (163)
                      .+|++..+.+++..|+++|+||++++| +.+.++.++|.++|++.++.+
T Consensus        71 i~tp~~~h~~~~~~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~g~~~  119 (345)
T 3f4l_A           71 VCTHADSHFEYAKRALEAGKNVLVEKPFTPTLAQAKELFALAKSKGLTV  119 (345)
T ss_dssp             ECSCGGGHHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTCCE
T ss_pred             EcCChHHHHHHHHHHHHcCCcEEEeCCCCCCHHHHHHHHHHHHHcCCeE
Confidence            999889999999999999999999999 789999999999999988755

>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida}

Probab=99.68  E-value=6.9e-17  Score=135.28  Aligned_cols=115  Identities=16%  Similarity=0.114  Sum_probs=93.6

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCc-------EEEEEEecCCCCcchhhhccCCCCCCc-ceeCCHHHHHhcccccCC
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGM-------EVAGAIDSHSVGEDIGMVCDMEQPLEI-PVMSDLTMVLGSISQSKA  106 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~-------eLvgvid~~~~g~~~~~l~g~~~~~gi-~v~~~l~ell~~~~~~~~  106 (163)
                      ++||||+| +|+||+.|++.+...|++       +|++++|++.  ..+..+..   .+++ .+|+|++++++.    ++
T Consensus         6 klrvgiIG-~G~ig~~h~~~~~~~~~~~~~~~~~~l~av~d~~~--~~a~~~a~---~~g~~~~~~d~~~ll~~----~~   75 (390)
T 4h3v_A            6 NLGIGLIG-YAFMGAAHSQAWRSAPRFFDLPLHPDLNVLCGRDA--EAVRAAAG---KLGWSTTETDWRTLLER----DD   75 (390)
T ss_dssp             EEEEEEEC-HHHHHHHHHHHHHHHHHHSCCSSEEEEEEEECSSH--HHHHHHHH---HHTCSEEESCHHHHTTC----TT
T ss_pred             cCcEEEEc-CCHHHHHHHHHHHhCccccccccCceEEEEEcCCH--HHHHHHHH---HcCCCcccCCHHHHhcC----CC
Confidence            48999999 699999999999887764       9999999653  22222221   3454 479999999984    78


Q ss_pred             ccEEEEccCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHH---hhhcCeEE
Q 031216          107 RAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAF---CDKASMVS  159 (163)
Q Consensus       107 ~DVVIDfT~p~~~~~~~~~al~~G~~vVigtt-g~~~e~~~~L~~~---A~~~~Vv~  159 (163)
                      +|+|+.+|++..+.+++..|+++||||+++|| +.+.++.++|.++   +++.++++
T Consensus        76 iDaV~I~tP~~~H~~~~~~al~aGkhVl~EKPla~t~~ea~~l~~~~~~~~~~g~~~  132 (390)
T 4h3v_A           76 VQLVDVCTPGDSHAEIAIAALEAGKHVLCEKPLANTVAEAEAMAAAAAKAAAGGIRS  132 (390)
T ss_dssp             CSEEEECSCGGGHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHHHHTTCCE
T ss_pred             CCEEEEeCChHHHHHHHHHHHHcCCCceeecCcccchhHHHHHHHHHHHHHhcCCce
Confidence            99999899999999999999999999999999 8899999999666   55566543

>3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A*

Probab=99.68  E-value=9.6e-17  Score=140.95  Aligned_cols=123  Identities=20%  Similarity=0.193  Sum_probs=99.5

Q ss_pred             CCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhc----cCC----------------CCCCcceeC
Q 031216           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC----DME----------------QPLEIPVMS   92 (163)
Q Consensus        33 ~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~----g~~----------------~~~gi~v~~   92 (163)
                      .+++||||+| +|+||+.+++.+.+.++++|++++|++..  .+..+.    |..                ....+.+|+
T Consensus        21 ~k~IRVGIIG-aG~iG~~~~~~l~~~~~veLvAV~D~~~e--ra~~~a~~~yG~~~~~~~~~~~~~i~~a~~~g~~~v~~   97 (446)
T 3upl_A           21 GKPIRIGLIG-AGEMGTDIVTQVARMQGIEVGALSARRLP--NTFKAIRTAYGDEENAREATTESAMTRAIEAGKIAVTD   97 (446)
T ss_dssp             TCCEEEEEEC-CSHHHHHHHHHHTTSSSEEEEEEECSSTH--HHHHHHHHHHSSSTTEEECSSHHHHHHHHHTTCEEEES
T ss_pred             CCceEEEEEC-ChHHHHHHHHHHhhCCCcEEEEEEeCCHH--HHHHHHHHhcCCccccccccchhhhhhhhccCCceEEC
Confidence            4579999999 59999999999999999999999996531  111111    200                012356899


Q ss_pred             CHHHHHhcccccCCccEEEEccC-chhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeEEcCC
Q 031216           93 DLTMVLGSISQSKARAVVIDFTD-ASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVSTGS  162 (163)
Q Consensus        93 ~l~ell~~~~~~~~~DVVIDfT~-p~~~~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv~tg~  162 (163)
                      |++++++.    .++|+|+++|. |+.+.+++..|+++||||++++++++.++.++|.++|++.+++++.+
T Consensus        98 D~eeLL~d----~dIDaVviaTp~p~~H~e~a~~AL~AGKHVv~~nk~l~~~eg~eL~~~A~e~Gvvl~~~  164 (446)
T 3upl_A           98 DNDLILSN----PLIDVIIDATGIPEVGAETGIAAIRNGKHLVMMNVEADVTIGPYLKAQADKQGVIYSLG  164 (446)
T ss_dssp             CHHHHHTC----TTCCEEEECSCCHHHHHHHHHHHHHTTCEEEECCHHHHHHHHHHHHHHHHHHTCCEEEC
T ss_pred             CHHHHhcC----CCCCEEEEcCCChHHHHHHHHHHHHcCCcEEecCcccCHHHHHHHHHHHHHhCCeeeec
Confidence            99999984    78999999995 56679999999999999999888888889999999999999998653

>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}

Probab=99.68  E-value=5.5e-16  Score=131.13  Aligned_cols=116  Identities=21%  Similarity=0.236  Sum_probs=98.3

Q ss_pred             CCeeEEEEcCCCHHHHH-HHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCC-CcceeCCHHHHHhcccccCCccEEE
Q 031216           34 SNIKVIINGAVKEIGRA-AVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPL-EIPVMSDLTMVLGSISQSKARAVVI  111 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~-i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~-gi~v~~~l~ell~~~~~~~~~DVVI  111 (163)
                      +++||+|+| +|+||+. +++.+.+.++++|++++|+..  ..+..+..   .+ +.++|+|++++++.    .++|+|+
T Consensus         4 ~~~rigiIG-~G~~g~~~~~~~l~~~~~~~l~av~d~~~--~~~~~~a~---~~~~~~~~~~~~~ll~~----~~vD~V~   73 (359)
T 3m2t_A            4 SLIKVGLVG-IGAQMQENLLPSLLQMQDIRIVAACDSDL--ERARRVHR---FISDIPVLDNVPAMLNQ----VPLDAVV   73 (359)
T ss_dssp             CCEEEEEEC-CSHHHHHTHHHHHHTCTTEEEEEEECSSH--HHHGGGGG---TSCSCCEESSHHHHHHH----SCCSEEE
T ss_pred             CcceEEEEC-CCHHHHHHHHHHHHhCCCcEEEEEEcCCH--HHHHHHHH---hcCCCcccCCHHHHhcC----CCCCEEE
Confidence            358999999 6999985 899999999999999999643  22223321   23 56789999999984    6899999


Q ss_pred             EccCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCeEE
Q 031216          112 DFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMVS  159 (163)
Q Consensus       112 DfT~p~~~~~~~~~al~~G~~vVigtt-g~~~e~~~~L~~~A~~~~Vv~  159 (163)
                      .+|++..+.+++..|+++||||++++| +.+.++.++|.++|++.++.+
T Consensus        74 i~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~e~~~l~~~a~~~g~~~  122 (359)
T 3m2t_A           74 MAGPPQLHFEMGLLAMSKGVNVFVEKPPCATLEELETLIDAARRSDVVS  122 (359)
T ss_dssp             ECSCHHHHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHHTCCE
T ss_pred             EcCCcHHHHHHHHHHHHCCCeEEEECCCcCCHHHHHHHHHHHHHcCCEE
Confidence            899999999999999999999999999 889999999999999988754

>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A

Probab=99.67  E-value=3.5e-16  Score=132.10  Aligned_cols=114  Identities=18%  Similarity=0.170  Sum_probs=98.3

Q ss_pred             CCeeEEEEcCCCHHHHH-HHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEE
Q 031216           34 SNIKVIINGAVKEIGRA-AVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~-i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVID  112 (163)
                      +|+||||+| +|+||+. +++.+...++++|++++|+..  ....+.     ..++++|+|++++++.    .++|+|+.
T Consensus         4 ~~~rvgiiG-~G~~g~~~~~~~l~~~~~~~l~av~d~~~--~~~~~~-----~~~~~~~~~~~~ll~~----~~vD~V~i   71 (358)
T 3gdo_A            4 DTIKVGILG-YGLSGSVFHGPLLDVLDEYQISKIMTSRT--EEVKRD-----FPDAEVVHELEEITND----PAIELVIV   71 (358)
T ss_dssp             TCEEEEEEC-CSHHHHHTTHHHHTTCTTEEEEEEECSCH--HHHHHH-----CTTSEEESSTHHHHTC----TTCCEEEE
T ss_pred             CcceEEEEc-cCHHHHHHHHHHHhhCCCeEEEEEEcCCH--HHHHhh-----CCCCceECCHHHHhcC----CCCCEEEE
Confidence            469999999 6999996 899998899999999999753  122221     2267889999999974    78999999


Q ss_pred             ccCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCeEE
Q 031216          113 FTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMVS  159 (163)
Q Consensus       113 fT~p~~~~~~~~~al~~G~~vVigtt-g~~~e~~~~L~~~A~~~~Vv~  159 (163)
                      +|++..+.+++..|+++||||+++|| +.+.++.++|.++|++.++++
T Consensus        72 ~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~e~~~l~~~a~~~g~~~  119 (358)
T 3gdo_A           72 TTPSGLHYEHTMACIQAGKHVVMEKPMTATAEEGETLKRAADEKGVLL  119 (358)
T ss_dssp             CSCTTTHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHHHHHTCCE
T ss_pred             cCCcHHHHHHHHHHHHcCCeEEEecCCcCCHHHHHHHHHHHHHcCCeE
Confidence            99999999999999999999999999 899999999999999988765

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=99.67  E-value=6e-16  Score=129.01  Aligned_cols=119  Identities=10%  Similarity=0.185  Sum_probs=98.5

Q ss_pred             CCCCCeeEEEEcCCCHHHHHHHHHHH-hcCCcEEEEEEecCCCCcchhhhccCCCCCCc-ceeCCHHHHHhcccccCCcc
Q 031216           31 PPQSNIKVIINGAVKEIGRAAVIAVT-KARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI-PVMSDLTMVLGSISQSKARA  108 (163)
Q Consensus        31 ~~~~~irV~VvGa~G~mG~~i~~~i~-~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi-~v~~~l~ell~~~~~~~~~D  108 (163)
                      ++.+|+||+|+| +|+||+.+++.+. +.+++++++++|+..  .....+..   ..++ .+|+|++++++.    .++|
T Consensus         4 ~~~~~~~v~iiG-~G~ig~~~~~~l~~~~~~~~~vav~d~~~--~~~~~~a~---~~g~~~~~~~~~~~l~~----~~~D   73 (346)
T 3cea_A            4 TTRKPLRAAIIG-LGRLGERHARHLVNKIQGVKLVAACALDS--NQLEWAKN---ELGVETTYTNYKDMIDT----ENID   73 (346)
T ss_dssp             -CCCCEEEEEEC-CSTTHHHHHHHHHHTCSSEEEEEEECSCH--HHHHHHHH---TTCCSEEESCHHHHHTT----SCCS
T ss_pred             CCCCcceEEEEc-CCHHHHHHHHHHHhcCCCcEEEEEecCCH--HHHHHHHH---HhCCCcccCCHHHHhcC----CCCC
Confidence            356789999999 5999999999998 789999999999653  12222221   3455 578999999863    5899


Q ss_pred             EEEEccCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhc-CeEE
Q 031216          109 VVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKA-SMVS  159 (163)
Q Consensus       109 VVIDfT~p~~~~~~~~~al~~G~~vVigtt-g~~~e~~~~L~~~A~~~-~Vv~  159 (163)
                      +|+++|.+..+.+++..++++|+||++++| +++.++.++|.++|++. ++.+
T Consensus        74 ~V~i~tp~~~h~~~~~~al~~G~~v~~eKp~~~~~~~~~~l~~~a~~~~~~~~  126 (346)
T 3cea_A           74 AIFIVAPTPFHPEMTIYAMNAGLNVFCEKPLGLDFNEVDEMAKVIKSHPNQIF  126 (346)
T ss_dssp             EEEECSCGGGHHHHHHHHHHTTCEEEECSCCCSCHHHHHHHHHHHHTCTTSCE
T ss_pred             EEEEeCChHhHHHHHHHHHHCCCEEEEcCCCCCCHHHHHHHHHHHHhCCCCeE
Confidence            999999999999999999999999999998 78999999999999998 7654

>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}

Probab=99.67  E-value=8.2e-16  Score=128.49  Aligned_cols=120  Identities=13%  Similarity=0.137  Sum_probs=96.6

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhc---cc--ccCCcc
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGS---IS--QSKARA  108 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~---~~--~~~~~D  108 (163)
                      .|+||||+|+.|+||+.+++.+... +.+|++++|+...-   .....  ...++++|+|++++++.   +.  .+.++|
T Consensus         2 ~mirvgiIG~gG~i~~~h~~~l~~~-~~~lvav~d~~~~~---~~~~~--~~~~~~~~~~~~~ll~~~~~l~~~~~~~vD   75 (318)
T 3oa2_A            2 HMKNFALIGAAGYIAPRHMRAIKDT-GNCLVSAYDINDSV---GIIDS--ISPQSEFFTEFEFFLDHASNLKRDSATALD   75 (318)
T ss_dssp             -CCEEEEETTTSSSHHHHHHHHHHT-TCEEEEEECSSCCC---GGGGG--TCTTCEEESSHHHHHHHHHHHTTSTTTSCC
T ss_pred             CceEEEEECCCcHHHHHHHHHHHhC-CCEEEEEEcCCHHH---HHHHh--hCCCCcEECCHHHHHHhhhhhhhccCCCCc
Confidence            4899999995478999999999875 89999999965321   12211  12367889999999820   00  026899


Q ss_pred             EEEEccCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCeEE
Q 031216          109 VVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMVS  159 (163)
Q Consensus       109 VVIDfT~p~~~~~~~~~al~~G~~vVigtt-g~~~e~~~~L~~~A~~~~Vv~  159 (163)
                      +|+.+|+|..+.+++..|+++||||+++|| +.+.++.++|.++|++.++.+
T Consensus        76 ~V~I~tP~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~  127 (318)
T 3oa2_A           76 YVSICSPNYLHYPHIAAGLRLGCDVICEKPLVPTPEMLDQLAVIERETDKRL  127 (318)
T ss_dssp             EEEECSCGGGHHHHHHHHHHTTCEEEECSSCCSCHHHHHHHHHHHHHHTCCE
T ss_pred             EEEECCCcHHHHHHHHHHHHCCCeEEEECCCcCCHHHHHHHHHHHHHhCCEE
Confidence            999999999999999999999999999999 889999999999999988743

>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum}

Probab=99.67  E-value=3.1e-16  Score=129.93  Aligned_cols=117  Identities=19%  Similarity=0.236  Sum_probs=96.8

Q ss_pred             CCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEE
Q 031216           31 PPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVV  110 (163)
Q Consensus        31 ~~~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVV  110 (163)
                      +.++++||+|+| +|+||+.+++.+.+.+++++++++|+..  .....+.    .. +++|+|++++++.    .++|+|
T Consensus         6 ~~~~~~~igiIG-~G~~g~~~~~~l~~~~~~~~v~v~d~~~--~~~~~~~----~~-~~~~~~~~~~l~~----~~~D~V   73 (315)
T 3c1a_A            6 ANNSPVRLALIG-AGRWGKNYIRTIAGLPGAALVRLASSNP--DNLALVP----PG-CVIESDWRSVVSA----PEVEAV   73 (315)
T ss_dssp             ---CCEEEEEEE-CTTTTTTHHHHHHHCTTEEEEEEEESCH--HHHTTCC----TT-CEEESSTHHHHTC----TTCCEE
T ss_pred             CCCCcceEEEEC-CcHHHHHHHHHHHhCCCcEEEEEEeCCH--HHHHHHH----hh-CcccCCHHHHhhC----CCCCEE
Confidence            345679999999 5999999999999889999999999642  1122221    12 6678999999963    589999


Q ss_pred             EEccCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCeEE
Q 031216          111 IDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMVS  159 (163)
Q Consensus       111 IDfT~p~~~~~~~~~al~~G~~vVigtt-g~~~e~~~~L~~~A~~~~Vv~  159 (163)
                      +.+|+|..+.+++..++++|+||++++| ..+.++..+|.++|++.++.+
T Consensus        74 ~i~tp~~~h~~~~~~al~~Gk~v~~eKP~~~~~~~~~~l~~~a~~~g~~~  123 (315)
T 3c1a_A           74 IIATPPATHAEITLAAIASGKAVLVEKPLTLDLAEAEAVAAAAKATGVMV  123 (315)
T ss_dssp             EEESCGGGHHHHHHHHHHTTCEEEEESSSCSCHHHHHHHHHHHHHHCCCE
T ss_pred             EEeCChHHHHHHHHHHHHCCCcEEEcCCCcCCHHHHHHHHHHHHHcCCEE
Confidence            9999999999999999999999999998 789999999999999988754

>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}

Probab=99.67  E-value=3.3e-16  Score=129.22  Aligned_cols=114  Identities=18%  Similarity=0.241  Sum_probs=96.4

Q ss_pred             CCeeEEEEcCCCHHHHH-HHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEE
Q 031216           34 SNIKVIINGAVKEIGRA-AVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~-i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVID  112 (163)
                      +|+||+|+| +|+||+. +++.+.+.++++|++++|+..  ..+..+..   .++++.|+|++++++      ++|+|+.
T Consensus         5 ~~~~igiIG-~G~~g~~~~~~~l~~~~~~~l~av~d~~~--~~~~~~a~---~~~~~~~~~~~~ll~------~~D~V~i   72 (308)
T 3uuw_A            5 KNIKMGMIG-LGSIAQKAYLPILTKSERFEFVGAFTPNK--VKREKICS---DYRIMPFDSIESLAK------KCDCIFL   72 (308)
T ss_dssp             CCCEEEEEC-CSHHHHHHTHHHHTSCSSSEEEEEECSCH--HHHHHHHH---HHTCCBCSCHHHHHT------TCSEEEE
T ss_pred             ccCcEEEEe-cCHHHHHHHHHHHHhCCCeEEEEEECCCH--HHHHHHHH---HcCCCCcCCHHHHHh------cCCEEEE
Confidence            358999999 6999996 999998889999999999653  22223221   345666999999995      8999999


Q ss_pred             ccCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCeEE
Q 031216          113 FTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMVS  159 (163)
Q Consensus       113 fT~p~~~~~~~~~al~~G~~vVigtt-g~~~e~~~~L~~~A~~~~Vv~  159 (163)
                      +|++..+.+++..++++|+||++++| +.+.++.++|.++|++.++.+
T Consensus        73 ~tp~~~h~~~~~~al~~gk~vl~EKP~~~~~~~~~~l~~~a~~~g~~~  120 (308)
T 3uuw_A           73 HSSTETHYEIIKILLNLGVHVYVDKPLASTVSQGEELIELSTKKNLNL  120 (308)
T ss_dssp             CCCGGGHHHHHHHHHHTTCEEEECSSSSSSHHHHHHHHHHHHHHTCCE
T ss_pred             eCCcHhHHHHHHHHHHCCCcEEEcCCCCCCHHHHHHHHHHHHHcCCEE
Confidence            99999999999999999999999999 789999999999999988654

>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*

Probab=99.67  E-value=1e-16  Score=137.50  Aligned_cols=114  Identities=16%  Similarity=0.279  Sum_probs=92.8

Q ss_pred             CCCCeeEEEEcCCCHHHHHHHHHHHhcC-CcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEE
Q 031216           32 PQSNIKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVV  110 (163)
Q Consensus        32 ~~~~irV~VvGa~G~mG~~i~~~i~~~~-~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVV  110 (163)
                      .+.++||+|+| +| +|+.+++.+.+.+ +++|+|++|+..  +++.++..   .+|++.|+|++++++      ++|++
T Consensus         4 ~~~~~rv~VvG-~G-~g~~h~~a~~~~~~~~elvav~~~~~--~~a~~~a~---~~gv~~~~~~~~l~~------~~D~v   70 (372)
T 4gmf_A            4 ASPKQRVLIVG-AK-FGEMYLNAFMQPPEGLELVGLLAQGS--ARSRELAH---AFGIPLYTSPEQITG------MPDIA   70 (372)
T ss_dssp             ---CEEEEEEC-ST-TTHHHHHTTSSCCTTEEEEEEECCSS--HHHHHHHH---HTTCCEESSGGGCCS------CCSEE
T ss_pred             CCCCCEEEEEe-hH-HHHHHHHHHHhCCCCeEEEEEECCCH--HHHHHHHH---HhCCCEECCHHHHhc------CCCEE
Confidence            34579999999 58 7999999988876 699999999753  33344442   578999999999985      79998


Q ss_pred             EEccCchhH----HHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeEE
Q 031216          111 IDFTDASTV----YDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVS  159 (163)
Q Consensus       111 IDfT~p~~~----~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv~  159 (163)
                      +.+|.+..+    .++++.|+++||||+++|| ++.++.++|.++|++.++.+
T Consensus        71 ~i~~p~~~h~~~~~~~a~~al~aGkhVl~EKP-l~~~ea~~l~~~A~~~g~~~  122 (372)
T 4gmf_A           71 CIVVRSTVAGGAGTQLARHFLARGVHVIQEHP-LHPDDISSLQTLAQEQGCCY  122 (372)
T ss_dssp             EECCC--CTTSHHHHHHHHHHHTTCEEEEESC-CCHHHHHHHHHHHHHHTCCE
T ss_pred             EEECCCcccchhHHHHHHHHHHcCCcEEEecC-CCHHHHHHHHHHHHHcCCEE
Confidence            877755554    7999999999999999999 78999999999999999875

>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*

Probab=99.67  E-value=1.8e-16  Score=137.64  Aligned_cols=122  Identities=9%  Similarity=0.054  Sum_probs=98.2

Q ss_pred             CCCCeeEEEEcCCCHHHH-HHHHHHHhcCCcEEEEEEecCCC-CcchhhhccCCCCCCcceeCCHHHHHhcccccCCccE
Q 031216           32 PQSNIKVIINGAVKEIGR-AAVIAVTKARGMEVAGAIDSHSV-GEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV  109 (163)
Q Consensus        32 ~~~~irV~VvGa~G~mG~-~i~~~i~~~~~~eLvgvid~~~~-g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DV  109 (163)
                      +.+++||+|+| +|+||+ .+++.+.+.++++|++++|+... .+...+..+.. ..++.+|+|++++++.    .++|+
T Consensus        80 ~~~~irigiIG-~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~a~~~g~~-~~~~~~~~~~~~ll~~----~~vD~  153 (433)
T 1h6d_A           80 EDRRFGYAIVG-LGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVD-PRKIYDYSNFDKIAKD----PKIDA  153 (433)
T ss_dssp             CCCCEEEEEEC-CSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCC-GGGEECSSSGGGGGGC----TTCCE
T ss_pred             CCCceEEEEEC-CcHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCC-cccccccCCHHHHhcC----CCCCE
Confidence            45679999999 599997 89999988899999999996531 12222222221 1123478999999874    68999


Q ss_pred             EEEccCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCeEE
Q 031216          110 VIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMVS  159 (163)
Q Consensus       110 VIDfT~p~~~~~~~~~al~~G~~vVigtt-g~~~e~~~~L~~~A~~~~Vv~  159 (163)
                      |+.+|.+..+.+++..|+++|+||++++| +++.++.++|.++|++.++++
T Consensus       154 V~iatp~~~h~~~~~~al~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g~~~  204 (433)
T 1h6d_A          154 VYIILPNSLHAEFAIRAFKAGKHVMCEKPMATSVADCQRMIDAAKAANKKL  204 (433)
T ss_dssp             EEECSCGGGHHHHHHHHHHTTCEEEECSSCCSSHHHHHHHHHHHHHHTCCE
T ss_pred             EEEcCCchhHHHHHHHHHHCCCcEEEcCCCCCCHHHHHHHHHHHHHhCCeE
Confidence            99999999999999999999999999998 789999999999999988754

>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*

Probab=99.66  E-value=1.6e-15  Score=125.91  Aligned_cols=114  Identities=18%  Similarity=0.245  Sum_probs=96.6

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEc
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDf  113 (163)
                      +++||+|+|++|+||+.+++.+.+. ++++++.+++...|.   +      ..|+++|+|++++.++    .++|++++|
T Consensus         6 ~~~rVaViG~sG~~G~~~~~~l~~~-g~~~V~~V~p~~~g~---~------~~G~~vy~sl~el~~~----~~~D~viI~   71 (288)
T 2nu8_A            6 KNTKVICQGFTGSQGTFHSEQAIAY-GTKMVGGVTPGKGGT---T------HLGLPVFNTVREAVAA----TGATASVIY   71 (288)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHH-TCEEEEEECTTCTTC---E------ETTEEEESSHHHHHHH----HCCCEEEEC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHC-CCeEEEEeCCCcccc---e------eCCeeccCCHHHHhhc----CCCCEEEEe
Confidence            4589999998899999999998876 799998888643222   1      3578999999999853    489999999


Q ss_pred             cCchhHHHHHHHHHHcCCcE-EEeCCCCCHHHHHHHHHHhhhcCeEEcC
Q 031216          114 TDASTVYDNVKQATAFGMRS-VVYVPHIQLETVSALSAFCDKASMVSTG  161 (163)
Q Consensus       114 T~p~~~~~~~~~al~~G~~v-Vigttg~~~e~~~~L~~~A~~~~Vv~tg  161 (163)
                      ++|+.+.+.+..|+++|+++ |+.|+|++.++.++|.++|++.++.+-|
T Consensus        72 tP~~~~~~~~~ea~~~Gi~~iVi~t~G~~~~~~~~l~~~A~~~gv~liG  120 (288)
T 2nu8_A           72 VPAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLDEAGVRMIG  120 (288)
T ss_dssp             CCGGGHHHHHHHHHHTTCSEEEECCCCCCHHHHHHHHHHHHHHTCEEEC
T ss_pred             cCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEEe
Confidence            99999999999999999997 5667799999899999999999985543

>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5

Probab=99.66  E-value=8.7e-16  Score=127.22  Aligned_cols=114  Identities=15%  Similarity=0.255  Sum_probs=94.3

Q ss_pred             CCeeEEEEcCCCHHHHH-HHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEE
Q 031216           34 SNIKVIINGAVKEIGRA-AVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~-i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVID  112 (163)
                      +++||+|+| +|+||+. +++.+.+.++++|++++|+...  ...++..   ..++++|++++++ .     .++|+|+.
T Consensus         4 ~~~~vgiiG-~G~~g~~~~~~~l~~~~~~~lvav~d~~~~--~~~~~~~---~~g~~~~~~~~~l-~-----~~~D~V~i   71 (319)
T 1tlt_A            4 KKLRIGVVG-LGGIAQKAWLPVLAAASDWTLQGAWSPTRA--KALPICE---SWRIPYADSLSSL-A-----ASCDAVFV   71 (319)
T ss_dssp             -CEEEEEEC-CSTHHHHTHHHHHHSCSSEEEEEEECSSCT--THHHHHH---HHTCCBCSSHHHH-H-----TTCSEEEE
T ss_pred             CcceEEEEC-CCHHHHHHHHHHHHhCCCeEEEEEECCCHH--HHHHHHH---HcCCCccCcHHHh-h-----cCCCEEEE
Confidence            368999999 5999996 9999988899999999996532  2222221   3356678999877 4     58999999


Q ss_pred             ccCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCeEE
Q 031216          113 FTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMVS  159 (163)
Q Consensus       113 fT~p~~~~~~~~~al~~G~~vVigtt-g~~~e~~~~L~~~A~~~~Vv~  159 (163)
                      +|++..+.+++..++++|+||++++| +++.++.++|.++|++.++.+
T Consensus        72 ~tp~~~h~~~~~~al~~G~~v~~eKP~~~~~~~~~~l~~~a~~~g~~~  119 (319)
T 1tlt_A           72 HSSTASHFDVVSTLLNAGVHVCVDKPLAENLRDAERLVELAARKKLTL  119 (319)
T ss_dssp             CSCTTHHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHTTCCE
T ss_pred             eCCchhHHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCeE
Confidence            99889999999999999999999998 789999999999999988755

>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*

Probab=99.65  E-value=6.3e-16  Score=134.22  Aligned_cols=123  Identities=14%  Similarity=0.095  Sum_probs=97.6

Q ss_pred             CCCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCC---CcceeC----CHHHHHhccc
Q 031216           30 NPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPL---EIPVMS----DLTMVLGSIS  102 (163)
Q Consensus        30 ~~~~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~---gi~v~~----~l~ell~~~~  102 (163)
                      .++.+++||+|+| +|+||+.+++.+...++++|++++|+..  ..+..+.......   +..+|+    |++++++.  
T Consensus        15 ~~~~~~~rvgiIG-~G~~g~~h~~~l~~~~~~~lvav~d~~~--~~~~~~a~~~~~~g~~~~~~~~~~~~~~~~ll~~--   89 (444)
T 2ixa_A           15 DFNPKKVRIAFIA-VGLRGQTHVENMARRDDVEIVAFADPDP--YMVGRAQEILKKNGKKPAKVFGNGNDDYKNMLKD--   89 (444)
T ss_dssp             ----CCEEEEEEC-CSHHHHHHHHHHHTCTTEEEEEEECSCH--HHHHHHHHHHHHTTCCCCEEECSSTTTHHHHTTC--
T ss_pred             cCCCCCceEEEEe-cCHHHHHHHHHHHhCCCcEEEEEEeCCH--HHHHHHHHHHHhcCCCCCceeccCCCCHHHHhcC--
Confidence            3455679999999 6999999999999999999999999653  1222211100011   256788    99999974  


Q ss_pred             ccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCeEE
Q 031216          103 QSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMVS  159 (163)
Q Consensus       103 ~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigtt-g~~~e~~~~L~~~A~~~~Vv~  159 (163)
                        .++|+|+.+|++..+.+++..|+++||||++++| ..+.++.++|.++|++.++.+
T Consensus        90 --~~vD~V~i~tp~~~h~~~~~~al~aGkhV~~EKP~a~~~~ea~~l~~~a~~~g~~~  145 (444)
T 2ixa_A           90 --KNIDAVFVSSPWEWHHEHGVAAMKAGKIVGMEVSGAITLEECWDYVKVSEQTGVPL  145 (444)
T ss_dssp             --TTCCEEEECCCGGGHHHHHHHHHHTTCEEEECCCCCSSHHHHHHHHHHHHHHCCCE
T ss_pred             --CCCCEEEEcCCcHHHHHHHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHHhCCeE
Confidence              6899999999999999999999999999999999 789999999999999988654

>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum}

Probab=99.64  E-value=3.6e-16  Score=132.50  Aligned_cols=118  Identities=15%  Similarity=0.258  Sum_probs=98.2

Q ss_pred             CCCeeEEEEcCCCHHHHH-HH----HHHHhcCCcEEE---------EEEecCCCCcchhhhccCCCCCCcc-eeCCHHHH
Q 031216           33 QSNIKVIINGAVKEIGRA-AV----IAVTKARGMEVA---------GAIDSHSVGEDIGMVCDMEQPLEIP-VMSDLTMV   97 (163)
Q Consensus        33 ~~~irV~VvGa~G~mG~~-i~----~~i~~~~~~eLv---------gvid~~~~g~~~~~l~g~~~~~gi~-v~~~l~el   97 (163)
                      .+++||+|+|++|.||+. ++    +.+.+.++++|+         +++|+..  ..+..+..   .++++ +|+|++++
T Consensus         4 ~~~irigiiG~~G~~g~~~h~~~~~~~~~~~~~~~l~~~~~~~~~~av~~~~~--~~a~~~a~---~~~~~~~~~~~~~l   78 (383)
T 3oqb_A            4 TQRLGLIMNGVTGRMGLNQHLIRSIVAIRDQGGVRLKNGDRIMPDPILVGRSA--EKVEALAK---RFNIARWTTDLDAA   78 (383)
T ss_dssp             CEEEEEEEESTTSTHHHHTTTTTTHHHHHHHTSEECTTSCEEEEEEEEECSSS--HHHHHHHH---HTTCCCEESCHHHH
T ss_pred             CceeEEEEEeccchhhhhhhHHHHHHHHhhcCceeecCCcccceeeEEEcCCH--HHHHHHHH---HhCCCcccCCHHHH
Confidence            457999999977999998 88    899888888765         6888643  22333321   45664 79999999


Q ss_pred             HhcccccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCeEE
Q 031216           98 LGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMVS  159 (163)
Q Consensus        98 l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigtt-g~~~e~~~~L~~~A~~~~Vv~  159 (163)
                      ++.    .++|+|+.+|++..+.+++..|+++||||+++|| +++.++.++|.++|++.++.+
T Consensus        79 l~~----~~iD~V~i~tp~~~h~~~~~~al~~Gk~V~~EKP~a~~~~~~~~l~~~a~~~~~~~  137 (383)
T 3oqb_A           79 LAD----KNDTMFFDAATTQARPGLLTQAINAGKHVYCEKPIATNFEEALEVVKLANSKGVKH  137 (383)
T ss_dssp             HHC----SSCCEEEECSCSSSSHHHHHHHHTTTCEEEECSCSCSSHHHHHHHHHHHHHTTCCE
T ss_pred             hcC----CCCCEEEECCCchHHHHHHHHHHHCCCeEEEcCCCCCCHHHHHHHHHHHHHcCCeE
Confidence            984    7899999999999999999999999999999999 789999999999999988753

>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1

Probab=99.64  E-value=3.9e-15  Score=123.77  Aligned_cols=113  Identities=14%  Similarity=0.152  Sum_probs=96.8

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEc
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDf  113 (163)
                      +..||+|+|++|+||+.+++.+.+. ++++++.+++...|.   +      ..|+++|.+++++.++    .++|++|+|
T Consensus         6 ~~~~VaVvGasG~~G~~~~~~l~~~-g~~~v~~VnP~~~g~---~------i~G~~vy~sl~el~~~----~~~Dv~Ii~   71 (288)
T 1oi7_A            6 RETRVLVQGITGREGQFHTKQMLTY-GTKIVAGVTPGKGGM---E------VLGVPVYDTVKEAVAH----HEVDASIIF   71 (288)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHH-TCEEEEEECTTCTTC---E------ETTEEEESSHHHHHHH----SCCSEEEEC
T ss_pred             CCCEEEEECCCCCHHHHHHHHHHHc-CCeEEEEECCCCCCc---e------ECCEEeeCCHHHHhhc----CCCCEEEEe
Confidence            4589999999999999999998875 899888888653221   1      2578999999998863    489999999


Q ss_pred             cCchhHHHHHHHHHHcCCc-EEEeCCCCCHHHHHHHHHHhhhcCeEEc
Q 031216          114 TDASTVYDNVKQATAFGMR-SVVYVPHIQLETVSALSAFCDKASMVST  160 (163)
Q Consensus       114 T~p~~~~~~~~~al~~G~~-vVigttg~~~e~~~~L~~~A~~~~Vv~t  160 (163)
                      ++|+.+.+.++.|+++|++ +|+.|+|++.++.++|.++|++.++.+-
T Consensus        72 vp~~~~~~~~~ea~~~Gi~~vVi~t~G~~~~~~~~l~~~a~~~gi~vi  119 (288)
T 1oi7_A           72 VPAPAAADAALEAAHAGIPLIVLITEGIPTLDMVRAVEEIKALGSRLI  119 (288)
T ss_dssp             CCHHHHHHHHHHHHHTTCSEEEECCSCCCHHHHHHHHHHHHHHTCEEE
T ss_pred             cCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEE
Confidence            9999999999999999999 7888999999989999999999998443

>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV}

Probab=99.63  E-value=1.3e-15  Score=130.29  Aligned_cols=121  Identities=17%  Similarity=0.169  Sum_probs=97.7

Q ss_pred             CCCeeEEEEcCCCH---HHHHHHHHHHhcCCcEEEE-EEecCCCCcchhhhccCCCCCCc---ceeCCHHHHHhccc-cc
Q 031216           33 QSNIKVIINGAVKE---IGRAAVIAVTKARGMEVAG-AIDSHSVGEDIGMVCDMEQPLEI---PVMSDLTMVLGSIS-QS  104 (163)
Q Consensus        33 ~~~irV~VvGa~G~---mG~~i~~~i~~~~~~eLvg-vid~~~~g~~~~~l~g~~~~~gi---~v~~~l~ell~~~~-~~  104 (163)
                      -+++||||+| +|+   ||+.++..+...++++|++ ++|+..  ..+.++..   .+++   .+|+|++++++.-. ++
T Consensus        10 m~~~rvgiiG-~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~--~~a~~~a~---~~g~~~~~~~~~~~~ll~~~~~~~   83 (398)
T 3dty_A           10 PQPIRWAMVG-GGSQSQIGYIHRCAALRDNTFVLVAGAFDIDP--IRGSAFGE---QLGVDSERCYADYLSMFEQEARRA   83 (398)
T ss_dssp             CSCEEEEEEE-CCTTCSSHHHHHHHHHGGGSEEEEEEECCSSH--HHHHHHHH---HTTCCGGGBCSSHHHHHHHHTTCT
T ss_pred             cCcceEEEEc-CCccchhHHHHHHHHhhCCCeEEEEEEeCCCH--HHHHHHHH---HhCCCcceeeCCHHHHHhcccccC
Confidence            4579999999 699   9999999999899999998 677542  12222221   3455   68999999997200 00


Q ss_pred             CCccEEEEccCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCeEE
Q 031216          105 KARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMVS  159 (163)
Q Consensus       105 ~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigtt-g~~~e~~~~L~~~A~~~~Vv~  159 (163)
                      .++|+|+.+|++..+.+++..|+++||||+++|| +.+.++.++|.++|++.++++
T Consensus        84 ~~vD~V~i~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~  139 (398)
T 3dty_A           84 DGIQAVSIATPNGTHYSITKAALEAGLHVVCEKPLCFTVEQAENLRELSHKHNRIV  139 (398)
T ss_dssp             TCCSEEEEESCGGGHHHHHHHHHHTTCEEEECSCSCSCHHHHHHHHHHHHHTTCCE
T ss_pred             CCCCEEEECCCcHHHHHHHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHHcCCeE
Confidence            2599999899999999999999999999999999 889999999999999988754

>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima}

Probab=99.63  E-value=7.6e-16  Score=128.78  Aligned_cols=114  Identities=11%  Similarity=0.063  Sum_probs=94.7

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC--CCcchhhhccCCCCCC--cceeCCHHHHHhcccccCCccE
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS--VGEDIGMVCDMEQPLE--IPVMSDLTMVLGSISQSKARAV  109 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~--~g~~~~~l~g~~~~~g--i~v~~~l~ell~~~~~~~~~DV  109 (163)
                      +|+||+|+| +|.+|+.+++.+  .++++|++++|+..  ..+...+...   .++  .++|+|++++++.    .++|+
T Consensus         1 M~~rvgiiG-~G~~~~~~~~~l--~~~~~lvav~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ll~~----~~vD~   70 (337)
T 3ip3_A            1 MSLKICVIG-SSGHFRYALEGL--DEECSITGIAPGVPEEDLSKLEKAIS---EMNIKPKKYNNWWEMLEK----EKPDI   70 (337)
T ss_dssp             -CEEEEEEC-SSSCHHHHHTTC--CTTEEEEEEECSSTTCCCHHHHHHHH---TTTCCCEECSSHHHHHHH----HCCSE
T ss_pred             CceEEEEEc-cchhHHHHHHhc--CCCcEEEEEecCCchhhHHHHHHHHH---HcCCCCcccCCHHHHhcC----CCCCE
Confidence            479999999 588888898887  89999999999643  2223333321   223  4789999999984    68999


Q ss_pred             EEEccCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCe
Q 031216          110 VIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASM  157 (163)
Q Consensus       110 VIDfT~p~~~~~~~~~al~~G~~vVigtt-g~~~e~~~~L~~~A~~~~V  157 (163)
                      |+.+|++..+.+++..|+++||||+++|| +.+.++.++|.++|++.++
T Consensus        71 V~I~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~  119 (337)
T 3ip3_A           71 LVINTVFSLNGKILLEALERKIHAFVEKPIATTFEDLEKIRSVYQKVRN  119 (337)
T ss_dssp             EEECSSHHHHHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTT
T ss_pred             EEEeCCcchHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHhCC
Confidence            99899889999999999999999999999 7899999999999999886

>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}

Probab=99.63  E-value=1.8e-15  Score=128.12  Aligned_cols=114  Identities=11%  Similarity=0.118  Sum_probs=94.1

Q ss_pred             CeeEEEEcCCCHHHH-HHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCC-cceeCCHHHHHhcccccCCccEEEE
Q 031216           35 NIKVIINGAVKEIGR-AAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE-IPVMSDLTMVLGSISQSKARAVVID  112 (163)
Q Consensus        35 ~irV~VvGa~G~mG~-~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~g-i~v~~~l~ell~~~~~~~~~DVVID  112 (163)
                      ++||||+| +|++|. .++..+. .++++|++++|+..  ..+.++..   .++ .++|+|++++++.    +++|+|+.
T Consensus        26 ~irvgiiG-~G~~~~~~~~~~~~-~~~~~lvav~d~~~--~~a~~~a~---~~~~~~~~~~~~~ll~~----~~vD~V~I   94 (361)
T 3u3x_A           26 ELRFAAVG-LNHNHIYGQVNCLL-RAGARLAGFHEKDD--ALAAEFSA---VYADARRIATAEEILED----ENIGLIVS   94 (361)
T ss_dssp             CCEEEEEC-CCSTTHHHHHHHHH-HTTCEEEEEECSCH--HHHHHHHH---HSSSCCEESCHHHHHTC----TTCCEEEE
T ss_pred             CcEEEEEC-cCHHHHHHHHHHhh-cCCcEEEEEEcCCH--HHHHHHHH---HcCCCcccCCHHHHhcC----CCCCEEEE
Confidence            58999999 699995 4566665 69999999999653  22233321   333 5789999999984    68999998


Q ss_pred             ccCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCeEE
Q 031216          113 FTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMVS  159 (163)
Q Consensus       113 fT~p~~~~~~~~~al~~G~~vVigtt-g~~~e~~~~L~~~A~~~~Vv~  159 (163)
                      +|++..+.+++..|+++||||++++| +.+.++.++|.++|++.++++
T Consensus        95 ~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~l  142 (361)
T 3u3x_A           95 AAVSSERAELAIRAMQHGKDVLVDKPGMTSFDQLAKLRRVQAETGRIF  142 (361)
T ss_dssp             CCCHHHHHHHHHHHHHTTCEEEEESCSCSSHHHHHHHHHHHHTTCCCE
T ss_pred             eCChHHHHHHHHHHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEE
Confidence            99888999999999999999999999 889999999999999988765

>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}

Probab=99.62  E-value=3.5e-15  Score=123.70  Aligned_cols=113  Identities=17%  Similarity=0.149  Sum_probs=93.7

Q ss_pred             eeEEEEcCCCHHHHHH-HHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcc-eeCCHHHHHhcccccCCccEEEEc
Q 031216           36 IKVIINGAVKEIGRAA-VIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP-VMSDLTMVLGSISQSKARAVVIDF  113 (163)
Q Consensus        36 irV~VvGa~G~mG~~i-~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~-v~~~l~ell~~~~~~~~~DVVIDf  113 (163)
                      +||+|+| +|+||+.+ ++.+.+ +++++++++|++.  ....++..   ..+++ +|+|+++++..    .++|+|+.+
T Consensus         1 ~~vgiiG-~G~~g~~~~~~~l~~-~~~~~vav~d~~~--~~~~~~~~---~~g~~~~~~~~~~~l~~----~~~D~V~i~   69 (332)
T 2glx_A            1 NRWGLIG-ASTIAREWVIGAIRA-TGGEVVSMMSTSA--ERGAAYAT---ENGIGKSVTSVEELVGD----PDVDAVYVS   69 (332)
T ss_dssp             CEEEEES-CCHHHHHTHHHHHHH-TTCEEEEEECSCH--HHHHHHHH---HTTCSCCBSCHHHHHTC----TTCCEEEEC
T ss_pred             CeEEEEc-ccHHHHHhhhHHhhc-CCCeEEEEECCCH--HHHHHHHH---HcCCCcccCCHHHHhcC----CCCCEEEEe
Confidence            5899999 59999998 888887 9999999999653  12222221   34554 78999999863    579999999


Q ss_pred             cCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCeEE
Q 031216          114 TDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMVS  159 (163)
Q Consensus       114 T~p~~~~~~~~~al~~G~~vVigtt-g~~~e~~~~L~~~A~~~~Vv~  159 (163)
                      |+|..+.+++..++++|+||++++| +.+.++.++|.++|++.++.+
T Consensus        70 tp~~~h~~~~~~al~~Gk~v~~ekP~~~~~~~~~~l~~~a~~~g~~~  116 (332)
T 2glx_A           70 TTNELHREQTLAAIRAGKHVLCEKPLAMTLEDAREMVVAAREAGVVL  116 (332)
T ss_dssp             SCGGGHHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTCCE
T ss_pred             CChhHhHHHHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHHcCCEE
Confidence            9999999999999999999999998 789999999999999988654

>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A*

Probab=99.61  E-value=2.6e-15  Score=125.77  Aligned_cols=109  Identities=17%  Similarity=0.131  Sum_probs=91.6

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEc
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDf  113 (163)
                      +++||+|+| +|+||+.+++.+.+.++++|++++|+....    .+     ..++++|+|+++++.      ++|+||++
T Consensus         2 ~~irV~IiG-~G~mG~~~~~~l~~~~~~elvav~d~~~~~----~~-----~~gv~~~~d~~~ll~------~~DvViia   65 (320)
T 1f06_A            2 TNIRVAIVG-YGNLGRSVEKLIAKQPDMDLVGIFSRRATL----DT-----KTPVFDVADVDKHAD------DVDVLFLC   65 (320)
T ss_dssp             CCEEEEEEC-CSHHHHHHHHHHTTCSSEEEEEEEESSSCC----SS-----SSCEEEGGGGGGTTT------TCSEEEEC
T ss_pred             CCCEEEEEe-ecHHHHHHHHHHhcCCCCEEEEEEcCCHHH----hh-----cCCCceeCCHHHHhc------CCCEEEEc
Confidence            368999999 599999999999999999999999975321    11     135777889988773      89999999


Q ss_pred             cCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHH-HHHHHHhhhcCeE
Q 031216          114 TDASTVYDNVKQATAFGMRSVVYVP-HIQLETV-SALSAFCDKASMV  158 (163)
Q Consensus       114 T~p~~~~~~~~~al~~G~~vVigtt-g~~~e~~-~~L~~~A~~~~Vv  158 (163)
                      |.|..+.+++..++++|+|+|+++| +.+.++. ++|.++|++.+.+
T Consensus        66 tp~~~h~~~~~~al~aG~~Vv~ekp~~~~~~~~~~~l~~~a~~~~~v  112 (320)
T 1f06_A           66 MGSATDIPEQAPKFAQFACTVDTYDNHRDIPRHRQVMNEAATAAGNV  112 (320)
T ss_dssp             SCTTTHHHHHHHHHTTTSEEECCCCCGGGHHHHHHHHHHHHHHHTCE
T ss_pred             CCcHHHHHHHHHHHHCCCEEEECCCCcCCHHHHHHHHHHHHHhCCCE
Confidence            9999899999999999999999998 5677777 8999999986633

>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}

Probab=99.61  E-value=5.3e-15  Score=123.30  Aligned_cols=115  Identities=12%  Similarity=0.104  Sum_probs=93.8

Q ss_pred             CCeeEEEEcCCCHHHH-HHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCC-CcceeCCHHHHHhcccccCCccEEE
Q 031216           34 SNIKVIINGAVKEIGR-AAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPL-EIPVMSDLTMVLGSISQSKARAVVI  111 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~-~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~-gi~v~~~l~ell~~~~~~~~~DVVI  111 (163)
                      +++||+|+| +|.||. .+++.+. .++++|++++|+...  .+..+..   .+ ++++|+|++++++.    .++|+|+
T Consensus         3 ~~~rvgiiG-~G~~~~~~~~~~l~-~~~~~lvav~d~~~~--~~~~~a~---~~~~~~~~~~~~~ll~~----~~~D~V~   71 (336)
T 2p2s_A            3 KKIRFAAIG-LAHNHIYDMCQQLI-DAGAELAGVFESDSD--NRAKFTS---LFPSVPFAASAEQLITD----ASIDLIA   71 (336)
T ss_dssp             -CCEEEEEC-CSSTHHHHHHHHHH-HTTCEEEEEECSCTT--SCHHHHH---HSTTCCBCSCHHHHHTC----TTCCEEE
T ss_pred             CccEEEEEC-CChHHHHHhhhhhc-CCCcEEEEEeCCCHH--HHHHHHH---hcCCCcccCCHHHHhhC----CCCCEEE
Confidence            368999999 599996 5777775 689999999996532  2222221   22 56789999999974    6899999


Q ss_pred             EccCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCeEE
Q 031216          112 DFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMVS  159 (163)
Q Consensus       112 DfT~p~~~~~~~~~al~~G~~vVigtt-g~~~e~~~~L~~~A~~~~Vv~  159 (163)
                      .+|++..+.+++..|+++|+||++++| ..+.++.++|.++|++.++.+
T Consensus        72 i~tp~~~h~~~~~~al~aGkhVl~EKP~a~~~~e~~~l~~~a~~~g~~~  120 (336)
T 2p2s_A           72 CAVIPCDRAELALRTLDAGKDFFTAKPPLTTLEQLDAVQRRVAETGRKF  120 (336)
T ss_dssp             ECSCGGGHHHHHHHHHHTTCEEEECSSCCSCHHHHHHHHHHHHHHCCCE
T ss_pred             EeCChhhHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCEE
Confidence            899889999999999999999999998 789999999999999988754

>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}

Probab=99.61  E-value=1.3e-14  Score=121.02  Aligned_cols=112  Identities=19%  Similarity=0.251  Sum_probs=95.2

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCC-ccEEEEc
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKA-RAVVIDF  113 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~-~DVVIDf  113 (163)
                      +.|++|+|++|+||+.+++.+.+. ++++++.+++...|.   +      -.|+++|.|++++.+.    .+ +|++|+|
T Consensus        13 ~~~vvV~Gasg~~G~~~~~~l~~~-g~~~v~~VnP~~~g~---~------i~G~~vy~sl~el~~~----~~~~DvaIi~   78 (297)
T 2yv2_A           13 ETRVLVQGITGREGSFHAKAMLEY-GTKVVAGVTPGKGGS---E------VHGVPVYDSVKEALAE----HPEINTSIVF   78 (297)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHH-TCEEEEEECTTCTTC---E------ETTEEEESSHHHHHHH----CTTCCEEEEC
T ss_pred             CCEEEEECCCCCHHHHHHHHHHhC-CCcEEEEeCCCCCCc---e------ECCEeeeCCHHHHhhc----CCCCCEEEEe
Confidence            478999999999999999998875 899888888543222   1      2478999999998852    24 9999999


Q ss_pred             cCchhHHHHHHHHHHcCCc-EEEeCCCCCHHHHHHHHHHhhhcCeEEc
Q 031216          114 TDASTVYDNVKQATAFGMR-SVVYVPHIQLETVSALSAFCDKASMVST  160 (163)
Q Consensus       114 T~p~~~~~~~~~al~~G~~-vVigttg~~~e~~~~L~~~A~~~~Vv~t  160 (163)
                      ++|+.+.+.++.|+++|++ +|+.|+|++.++.++|.++|++.++.+-
T Consensus        79 vp~~~~~~~v~ea~~~Gi~~vVi~t~G~~~~~~~~l~~~A~~~gi~vi  126 (297)
T 2yv2_A           79 VPAPFAPDAVYEAVDAGIRLVVVITEGIPVHDTMRFVNYARQKGATII  126 (297)
T ss_dssp             CCGGGHHHHHHHHHHTTCSEEEECCCCCCHHHHHHHHHHHHHHTCEEE
T ss_pred             cCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEE
Confidence            9999999999999999999 8888999999999999999999998444

>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}

Probab=99.61  E-value=3e-15  Score=129.10  Aligned_cols=120  Identities=19%  Similarity=0.176  Sum_probs=95.6

Q ss_pred             CCeeEEEEcCCCH---HHHHHHHHHHhcCCcEEEE-EEecCCCCcchhhhccCCCCCCc---ceeCCHHHHHhccc-ccC
Q 031216           34 SNIKVIINGAVKE---IGRAAVIAVTKARGMEVAG-AIDSHSVGEDIGMVCDMEQPLEI---PVMSDLTMVLGSIS-QSK  105 (163)
Q Consensus        34 ~~irV~VvGa~G~---mG~~i~~~i~~~~~~eLvg-vid~~~~g~~~~~l~g~~~~~gi---~v~~~l~ell~~~~-~~~  105 (163)
                      +++||+|+| +|+   ||+.++..+...++++|++ ++|+..  ..+.++..   .+++   .+|+|++++++.-. ...
T Consensus        36 ~~~rvgiiG-~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~--~~a~~~a~---~~g~~~~~~~~~~~~ll~~~~~~~~  109 (417)
T 3v5n_A           36 KRIRLGMVG-GGSGAFIGAVHRIAARLDDHYELVAGALSSTP--EKAEASGR---ELGLDPSRVYSDFKEMAIREAKLKN  109 (417)
T ss_dssp             CCEEEEEES-CC--CHHHHHHHHHHHHTSCEEEEEEECCSSH--HHHHHHHH---HHTCCGGGBCSCHHHHHHHHHHCTT
T ss_pred             CcceEEEEc-CCCchHHHHHHHHHHhhCCCcEEEEEEeCCCH--HHHHHHHH---HcCCCcccccCCHHHHHhcccccCC
Confidence            468999999 699   9999999999889999997 777642  12222221   3455   58999999997200 003


Q ss_pred             CccEEEEccCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCeEE
Q 031216          106 ARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMVS  159 (163)
Q Consensus       106 ~~DVVIDfT~p~~~~~~~~~al~~G~~vVigtt-g~~~e~~~~L~~~A~~~~Vv~  159 (163)
                      ++|+|+.+|++..+.+++..|+++||||+++|| +.+.++.++|.++|++.++.+
T Consensus       110 ~vD~V~I~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~  164 (417)
T 3v5n_A          110 GIEAVAIVTPNHVHYAAAKEFLKRGIHVICDKPLTSTLADAKKLKKAADESDALF  164 (417)
T ss_dssp             CCSEEEECSCTTSHHHHHHHHHTTTCEEEEESSSCSSHHHHHHHHHHHHHCSSCE
T ss_pred             CCcEEEECCCcHHHHHHHHHHHhCCCeEEEECCCcCCHHHHHHHHHHHHHcCCEE
Confidence            699999999999999999999999999999999 889999999999999988754

>3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A

Probab=99.60  E-value=2.6e-15  Score=130.36  Aligned_cols=117  Identities=11%  Similarity=0.091  Sum_probs=97.8

Q ss_pred             CCeeEEEEcC---CCHHHHHHHHHHHhc-CCcEEEEEEecCCCCcchhhhccCCCCCCc---ceeCCHHHHHhcccccCC
Q 031216           34 SNIKVIINGA---VKEIGRAAVIAVTKA-RGMEVAGAIDSHSVGEDIGMVCDMEQPLEI---PVMSDLTMVLGSISQSKA  106 (163)
Q Consensus        34 ~~irV~VvGa---~G~mG~~i~~~i~~~-~~~eLvgvid~~~~g~~~~~l~g~~~~~gi---~v~~~l~ell~~~~~~~~  106 (163)
                      +++||+|+|+   .|.||+.+++.+.+. ++++|++++|+..  ..+..+..   .+++   .+|+|++++++.    .+
T Consensus        19 ~~irvgiIG~g~~gG~~g~~~~~~l~~~~~~~~lvav~d~~~--~~~~~~a~---~~g~~~~~~~~~~~~ll~~----~~   89 (438)
T 3btv_A           19 APIRVGFVGLNAAKGWAIKTHYPAILQLSSQFQITALYSPKI--ETSIATIQ---RLKLSNATAFPTLESFASS----ST   89 (438)
T ss_dssp             CCEEEEEESCCTTSSSTTTTHHHHHHHTTTTEEEEEEECSSH--HHHHHHHH---HTTCTTCEEESSHHHHHHC----SS
T ss_pred             CCCEEEEEcccCCCChHHHHHHHHHHhcCCCeEEEEEEeCCH--HHHHHHHH---HcCCCcceeeCCHHHHhcC----CC
Confidence            4599999994   299999999999998 9999999999643  11222221   2344   489999999974    68


Q ss_pred             ccEEEEccCchhHHHHHHHHHHcC------CcEEEeCC-CCCHHHHHHHHHHhhhcCeEE
Q 031216          107 RAVVIDFTDASTVYDNVKQATAFG------MRSVVYVP-HIQLETVSALSAFCDKASMVS  159 (163)
Q Consensus       107 ~DVVIDfT~p~~~~~~~~~al~~G------~~vVigtt-g~~~e~~~~L~~~A~~~~Vv~  159 (163)
                      +|+|+.+|.+..+.+++..|+++|      |||++++| +.+.++.++|.++|++.++++
T Consensus        90 vD~V~i~tp~~~H~~~~~~al~aG~~~~~~khVl~EKP~a~~~~e~~~l~~~a~~~g~~~  149 (438)
T 3btv_A           90 IDMIVIAIQVASHYEVVMPLLEFSKNNPNLKYLFVEWALACSLDQAESIYKAAAERGVQT  149 (438)
T ss_dssp             CSEEEECSCHHHHHHHHHHHHHHGGGCTTCCEEEEESSCCSSHHHHHHHHHHHHTTTCEE
T ss_pred             CCEEEEeCCcHHHHHHHHHHHHCCCCcccceeEEecCcccCCHHHHHHHHHHHHHcCCeE
Confidence            999999998899999999999999      99999998 789999999999999998765

>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}

Probab=99.60  E-value=1.2e-14  Score=121.04  Aligned_cols=112  Identities=18%  Similarity=0.275  Sum_probs=95.2

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT  114 (163)
                      ..|++|+|++|+||+.+++.+.+ .++++++.+++...|.   +      -.|+++|.|++++.++    .++|++|+|+
T Consensus        13 ~~~v~V~Gasg~~G~~~~~~l~~-~g~~~V~~VnP~~~g~---~------i~G~~vy~sl~el~~~----~~~Dv~ii~v   78 (294)
T 2yv1_A           13 NTKAIVQGITGRQGSFHTKKMLE-CGTKIVGGVTPGKGGQ---N------VHGVPVFDTVKEAVKE----TDANASVIFV   78 (294)
T ss_dssp             TCCEEEETTTSHHHHHHHHHHHH-TTCCEEEEECTTCTTC---E------ETTEEEESSHHHHHHH----HCCCEEEECC
T ss_pred             CCEEEEECCCCCHHHHHHHHHHh-CCCeEEEEeCCCCCCc---e------ECCEeeeCCHHHHhhc----CCCCEEEEcc
Confidence            46899999999999999999886 4888888887543222   1      2478999999999853    4899999999


Q ss_pred             CchhHHHHHHHHHHcCCc-EEEeCCCCCHHHHHHHHHHhhhcCeEEc
Q 031216          115 DASTVYDNVKQATAFGMR-SVVYVPHIQLETVSALSAFCDKASMVST  160 (163)
Q Consensus       115 ~p~~~~~~~~~al~~G~~-vVigttg~~~e~~~~L~~~A~~~~Vv~t  160 (163)
                      +|+.+.+.++.|+++|++ +|+.|+|++.++.++|.++|++.++.+-
T Consensus        79 p~~~~~~~v~ea~~~Gi~~vVi~t~G~~~~~~~~l~~~A~~~gi~vi  125 (294)
T 2yv1_A           79 PAPFAKDAVFEAIDAGIELIVVITEHIPVHDTMEFVNYAEDVGVKII  125 (294)
T ss_dssp             CHHHHHHHHHHHHHTTCSEEEECCSCCCHHHHHHHHHHHHHHTCEEE
T ss_pred             CHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEE
Confidence            999999999999999999 7778889999999999999999998544

>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis}

Probab=99.56  E-value=1.1e-14  Score=121.26  Aligned_cols=110  Identities=17%  Similarity=0.193  Sum_probs=86.6

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEc
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDf  113 (163)
                      +++||+|+| +|+||+.+++.+.++++++|++++|+...  .+..       .+++ +.+++++++.    .++|+|+++
T Consensus         8 ~~irv~IIG-~G~iG~~~~~~l~~~~~~elvav~d~~~~--~~~~-------~g~~-~~~~~~l~~~----~~~DvViia   72 (304)
T 3bio_A            8 KKIRAAIVG-YGNIGRYALQALREAPDFEIAGIVRRNPA--EVPF-------ELQP-FRVVSDIEQL----ESVDVALVC   72 (304)
T ss_dssp             CCEEEEEEC-CSHHHHHHHHHHHHCTTEEEEEEECC----------------CCTT-SCEESSGGGS----SSCCEEEEC
T ss_pred             CCCEEEEEC-ChHHHHHHHHHHhcCCCCEEEEEEcCCHH--HHHH-------cCCC-cCCHHHHHhC----CCCCEEEEC
Confidence            369999999 69999999999999999999999996432  1111       2333 2333333331    489999999


Q ss_pred             cCchhHHHHHHHHHHcCCcEEEeCC--CCCHHHHHHHHHHhhhcCeE
Q 031216          114 TDASTVYDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMV  158 (163)
Q Consensus       114 T~p~~~~~~~~~al~~G~~vVigtt--g~~~e~~~~L~~~A~~~~Vv  158 (163)
                      |.+..+.+++..++++|+||++++|  +.+.++..+|.+++++.+++
T Consensus        73 tp~~~h~~~~~~al~aG~~Vi~ekP~~a~~~~~~~~l~~~a~~~g~~  119 (304)
T 3bio_A           73 SPSREVERTALEILKKGICTADSFDIHDGILALRRSLGDAAGKSGAA  119 (304)
T ss_dssp             SCHHHHHHHHHHHHTTTCEEEECCCCGGGHHHHHHHHHHHHHHHTCE
T ss_pred             CCchhhHHHHHHHHHcCCeEEECCCCCCCCHHHHHHHHHHHHhCCCE
Confidence            9999999999999999999999997  57889999999999998854

>3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus}

Probab=99.55  E-value=8.7e-15  Score=123.78  Aligned_cols=123  Identities=15%  Similarity=0.135  Sum_probs=91.5

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhc--------CCcEEEEEEecCCCC---cchhhhccCCCCCCcceeC--CHHHHHhc
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKA--------RGMEVAGAIDSHSVG---EDIGMVCDMEQPLEIPVMS--DLTMVLGS  100 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~--------~~~eLvgvid~~~~g---~~~~~l~g~~~~~gi~v~~--~l~ell~~  100 (163)
                      +|+||+|+| +|.||+.+++.+.+.        ++++|++++|++..-   .+..++.... .....+|+  |++++++.
T Consensus         1 ~mirvgIiG-~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~id~~~~~~~~-~~~~~~~~~~d~~~ll~~   78 (327)
T 3do5_A            1 GMIKIAIVG-FGTVGQGVAELLIRKREEIEKAIGEFKVTAVADSKSSISGDFSLVEALRMK-RETGMLRDDAKAIEVVRS   78 (327)
T ss_dssp             -CEEEEEEC-CSHHHHHHHHHHHHTHHHHHHHHCCEEEEEEECSSCEEESSCCHHHHHHHH-HHHSSCSBCCCHHHHHHH
T ss_pred             CcEEEEEEe-ccHHHHHHHHHHHhhHHHHHhcCCCEEEEEEEeCChHhccccCHHHHHhhh-ccCccccCCCCHHHHhcC
Confidence            389999999 699999999999988        899999999965211   1112211100 01123555  99999975


Q ss_pred             ccccCCccEEEEccCchhH----HHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCe--EEcCC
Q 031216          101 ISQSKARAVVIDFTDASTV----YDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASM--VSTGS  162 (163)
Q Consensus       101 ~~~~~~~DVVIDfT~p~~~----~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~V--v~tg~  162 (163)
                          .++|+|+|+|+++.+    .+++..|+++|+|||+++.+.-..+.++|.++|++.++  +|.++
T Consensus        79 ----~~iDvVv~~tp~~~h~~~a~~~~~~aL~aGkhVv~~NKkpla~~~~eL~~~A~~~g~~~~~ea~  142 (327)
T 3do5_A           79 ----ADYDVLIEASVTRVDGGEGVNYIREALKRGKHVVTSNKGPLVAEFHGLMSLAERNGVRLMYEAT  142 (327)
T ss_dssp             ----SCCSEEEECCCCC----CHHHHHHHHHTTTCEEEECCSHHHHHHHHHHHHHHHHTTCCEECGGG
T ss_pred             ----CCCCEEEECCCCcccchhHHHHHHHHHHCCCeEEecCchhhHHHHHHHHHHHHhhCCcEEEEEE
Confidence                789999999977765    89999999999999999765444578999999999887  44444

>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5

Probab=99.53  E-value=3.5e-14  Score=117.85  Aligned_cols=113  Identities=13%  Similarity=0.177  Sum_probs=89.9

Q ss_pred             CeeEEEEcCCCHHHH-HHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcce-eCCHHHHHhcccccCCccEEEE
Q 031216           35 NIKVIINGAVKEIGR-AAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDLTMVLGSISQSKARAVVID  112 (163)
Q Consensus        35 ~irV~VvGa~G~mG~-~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v-~~~l~ell~~~~~~~~~DVVID  112 (163)
                      |+||+|+| +|+||+ .+++.+.+.++++|+ ++|+..  .....+..   .++++. +.+..+++.     .++|+|+.
T Consensus         2 ~~~igiIG-~G~ig~~~~~~~l~~~~~~~l~-v~d~~~--~~~~~~a~---~~g~~~~~~~~~~~l~-----~~~D~V~i   69 (323)
T 1xea_A            2 SLKIAMIG-LGDIAQKAYLPVLAQWPDIELV-LCTRNP--KVLGTLAT---RYRVSATCTDYRDVLQ-----YGVDAVMI   69 (323)
T ss_dssp             CEEEEEEC-CCHHHHHTHHHHHTTSTTEEEE-EECSCH--HHHHHHHH---HTTCCCCCSSTTGGGG-----GCCSEEEE
T ss_pred             CcEEEEEC-CCHHHHHHHHHHHHhCCCceEE-EEeCCH--HHHHHHHH---HcCCCccccCHHHHhh-----cCCCEEEE
Confidence            68999999 599998 599999888999999 998643  12222221   334543 445445554     58999999


Q ss_pred             ccCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCeEE
Q 031216          113 FTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMVS  159 (163)
Q Consensus       113 fT~p~~~~~~~~~al~~G~~vVigtt-g~~~e~~~~L~~~A~~~~Vv~  159 (163)
                      +|.|..+.+++..++++|+||++++| ..+.++.++|.++|++.++.+
T Consensus        70 ~tp~~~h~~~~~~al~~Gk~V~~EKP~~~~~~~~~~l~~~a~~~g~~~  117 (323)
T 1xea_A           70 HAATDVHSTLAAFFLHLGIPTFVDKPLAASAQECENLYELAEKHHQPL  117 (323)
T ss_dssp             CSCGGGHHHHHHHHHHTTCCEEEESCSCSSHHHHHHHHHHHHHTTCCE
T ss_pred             ECCchhHHHHHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHhcCCeE
Confidence            99999999999999999999999998 678999999999999988654

>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}

Probab=99.51  E-value=1.1e-13  Score=110.69  Aligned_cols=102  Identities=17%  Similarity=0.224  Sum_probs=84.7

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEccC
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT~  115 (163)
                      +||+++| +|+||+.+++.+. .++++|++++|++..   ..       .    .++|++++++     .++|+|++++.
T Consensus         1 m~vgiIG-~G~mG~~~~~~l~-~~g~~lv~v~d~~~~---~~-------~----~~~~~~~l~~-----~~~DvVv~~~~   59 (236)
T 2dc1_A            1 MLVGLIG-YGAIGKFLAEWLE-RNGFEIAAILDVRGE---HE-------K----MVRGIDEFLQ-----REMDVAVEAAS   59 (236)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHH-HTTCEEEEEECSSCC---CT-------T----EESSHHHHTT-----SCCSEEEECSC
T ss_pred             CEEEEEC-CCHHHHHHHHHHh-cCCCEEEEEEecCcc---hh-------h----hcCCHHHHhc-----CCCCEEEECCC
Confidence            5899999 5999999999988 699999999996421   00       1    5789999884     38999999999


Q ss_pred             chhHHHHHHHHHHcCCcEEEeCCCC-CHHHH-HHHHHHhhhcCeE
Q 031216          116 ASTVYDNVKQATAFGMRSVVYVPHI-QLETV-SALSAFCDKASMV  158 (163)
Q Consensus       116 p~~~~~~~~~al~~G~~vVigttg~-~~e~~-~~L~~~A~~~~Vv  158 (163)
                      +..+.+++..++++|+++|+++|+. +.++. ++|.+++++.++.
T Consensus        60 ~~~~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~~l~~~a~~~g~~  104 (236)
T 2dc1_A           60 QQAVKDYAEKILKAGIDLIVLSTGAFADRDFLSRVREVCRKTGRR  104 (236)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESCGGGGGSHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHCCCcEEEECcccCChHHHHHHHHHHHHhcCCe
Confidence            9999999999999999999999964 44444 7999999886653

>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}

Probab=99.50  E-value=5.5e-14  Score=123.38  Aligned_cols=113  Identities=16%  Similarity=0.202  Sum_probs=94.3

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhc---------CCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccC
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKA---------RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSK  105 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~---------~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~  105 (163)
                      ++||+|+| +|.+|+.+++.+.++         ++++|++++|++.  .....+.     .+..+|+|++++++.    .
T Consensus        10 ~irIgIIG-~G~VG~~~~~~L~~~~~~l~~~~g~~i~lvaV~d~~~--~~~~~~~-----~~~~~~~d~~ell~d----~   77 (444)
T 3mtj_A           10 PIHVGLLG-LGTVGGGTLTVLRRNAEEITRRAGREIRVVRAAVRNL--DKAEALA-----GGLPLTTNPFDVVDD----P   77 (444)
T ss_dssp             CEEEEEEC-CHHHHHHHHHHHHHTHHHHHHHHSSCEEEEEEECSCH--HHHHHHH-----TTCCEESCTHHHHTC----T
T ss_pred             cccEEEEC-CCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEECCH--HHhhhhc-----ccCcccCCHHHHhcC----C
Confidence            58999999 699999999887642         7999999999753  1222222     145678999999974    7


Q ss_pred             CccEEEEccCc-hhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeEE
Q 031216          106 ARAVVIDFTDA-STVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVS  159 (163)
Q Consensus       106 ~~DVVIDfT~p-~~~~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv~  159 (163)
                      ++|+|+++|.+ +.+.+++..|+++|||||+++++++.++.++|.++|++.++.+
T Consensus        78 diDvVve~tp~~~~h~~~~~~AL~aGKhVvtenkal~a~~~~eL~~~A~~~gv~l  132 (444)
T 3mtj_A           78 EIDIVVELIGGLEPARELVMQAIANGKHVVTANKHLVAKYGNEIFAAAQAKGVMV  132 (444)
T ss_dssp             TCCEEEECCCSSTTHHHHHHHHHHTTCEEEECCHHHHHHHHHHHHHHHHHHTCCE
T ss_pred             CCCEEEEcCCCchHHHHHHHHHHHcCCEEEECCcccCHHHHHHHHHHHHHhCCeE
Confidence            89999999975 7889999999999999999999888889999999999988765

>3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum}

Probab=99.44  E-value=8.7e-14  Score=117.62  Aligned_cols=118  Identities=20%  Similarity=0.218  Sum_probs=87.6

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhc------CCcEEEEEEecCCCC----cchhhhccCCCCCC-cc--eeCCHHHHHhc
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKA------RGMEVAGAIDSHSVG----EDIGMVCDMEQPLE-IP--VMSDLTMVLGS  100 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~------~~~eLvgvid~~~~g----~~~~~l~g~~~~~g-i~--v~~~l~ell~~  100 (163)
                      +++||+|+| +|+||+.+++.+.+.      ++++|++++|++...    .+...+.......+ ++  .+ |+++++..
T Consensus         3 k~irVgIiG-~G~VG~~~~~~L~~~~~~~~g~~l~lvaVad~~~~~~~~~idl~~~~~~~~~~g~~~~~~~-d~~e~l~~   80 (325)
T 3ing_A            3 KEIRIILMG-TGNVGLNVLRIIDASNRRRSAFSIKVVGVSDSRSYASGRNLDISSIISNKEKTGRISDRAF-SGPEDLMG   80 (325)
T ss_dssp             CEEEEEEEC-CSHHHHHHHHHHHHHHHHC--CEEEEEEEECSSBEEECSSCCHHHHHHHHHHHSCSCSSBC-CSGGGGTT
T ss_pred             ceEEEEEEc-CcHHHHHHHHHHHhchhhccCCCEEEEEEEecChhhcccccCHHHHHHHhhhcCCCCcccC-CHHHHhcC
Confidence            469999999 799999999999876      799999999975311    12222111000011 11  23 67777763


Q ss_pred             ccccCCccEEEEccCchh----HHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCe
Q 031216          101 ISQSKARAVVIDFTDAST----VYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASM  157 (163)
Q Consensus       101 ~~~~~~~DVVIDfT~p~~----~~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~V  157 (163)
                          .++|+|+|+|.+..    ..+++..|+++|+|||+++++...++.++|.++|++.++
T Consensus        81 ----~~iDvVVe~T~~~~~~~pa~~~~~~aL~aGkhVVtaNK~~la~~~~eL~~lA~~~g~  137 (325)
T 3ing_A           81 ----EAADLLVDCTPASRDGVREYSLYRMAFESGMNVVTANKSGLANKWHDIMDSANQNSK  137 (325)
T ss_dssp             ----SCCSEEEECCCCCSSSHHHHHHHHHHHHTTCEEEECCCHHHHHHHHHHHHHHHHHTC
T ss_pred             ----CCCCEEEECCCCccccchHHHHHHHHHHCCCeEEEcCchhHHHHHHHHHHHHHHcCC
Confidence                78999999997643    368999999999999998887666889999999999775

>3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A*

Probab=99.43  E-value=4.3e-13  Score=113.25  Aligned_cols=117  Identities=17%  Similarity=0.135  Sum_probs=87.4

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcC-------CcEEEEEEecCCC-Cc---chhhhccCCCCCCcc-eeC---CHHHHHh
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKAR-------GMEVAGAIDSHSV-GE---DIGMVCDMEQPLEIP-VMS---DLTMVLG   99 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~-------~~eLvgvid~~~~-g~---~~~~l~g~~~~~gi~-v~~---~l~ell~   99 (163)
                      ++||+|+| +|.||+.+++.+.+.+       +++|++++|++.. ..   +..++.......+++ +++   |+++++ 
T Consensus         6 ~irvgIiG-~G~VG~~~~~~l~~~~~~~~~g~~~~vvaV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ll-   83 (331)
T 3c8m_A            6 TINLSIFG-LGNVGLNLLRIIRSFNEENRLGLKFNVVFVADSLHSYYNERIDIGKVISYKEKGSLDSLEYESISASEAL-   83 (331)
T ss_dssp             EEEEEEEC-CSHHHHHHHHHHHHHHHHCSSSEEEEEEEEECSSCEEECTTCCHHHHHHHHHTTCGGGCCSEECCHHHHH-
T ss_pred             EEeEEEEe-cCHHHHHHHHHHHhChHHHhcCCcEEEEEEEECChHHhhcccChHHHhhhhccCCcccccCCCCCHHHHh-
Confidence            48999999 6999999999998876       7999999996531 01   111111000012342 566   999998 


Q ss_pred             cccccCCccEEEEccCch----hHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCe
Q 031216          100 SISQSKARAVVIDFTDAS----TVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASM  157 (163)
Q Consensus       100 ~~~~~~~~DVVIDfT~p~----~~~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~V  157 (163)
                      .    .++|+|+++|.+.    .+.+++..|+++|||||+.......++.++|.++|++.++
T Consensus        84 ~----~~iDvVv~~t~~~~~~~~~~~~~~~AL~aGkhVvtanK~pla~~~~eL~~~A~~~gv  141 (331)
T 3c8m_A           84 A----RDFDIVVDATPASADGKKELAFYKETFENGKDVVTANKSGLANFWPEIMEYARSNNR  141 (331)
T ss_dssp             H----SSCSEEEECSCCCSSSHHHHHHHHHHHHTTCEEEECCCHHHHHHHHHHHHHHHHHTC
T ss_pred             C----CCCCEEEECCCCCCccchHHHHHHHHHHCCCeEEecCchhhHHHHHHHHHHHHHcCC
Confidence            4    7999999999774    7789999999999999996443335788999999999885

>1ebf_A Homoserine dehydrogenase; dinucleotide, NAD, dimer, oxidoreductase; HET: NAD; 2.30A {Saccharomyces cerevisiae} SCOP: c.2.1.3 d.81.1.2 PDB: 1ebu_A* 1tve_A* 1q7g_A*

Probab=99.37  E-value=1.4e-12  Score=111.33  Aligned_cols=116  Identities=14%  Similarity=0.150  Sum_probs=85.3

Q ss_pred             CCCeeEEEEcCCCHHHHHHHHHHHhcC---CcEEEEEEecCCCCcchhhhccCCCCC-CcceeCCHHHHHhc--------
Q 031216           33 QSNIKVIINGAVKEIGRAAVIAVTKAR---GMEVAGAIDSHSVGEDIGMVCDMEQPL-EIPVMSDLTMVLGS--------  100 (163)
Q Consensus        33 ~~~irV~VvGa~G~mG~~i~~~i~~~~---~~eLvgvid~~~~g~~~~~l~g~~~~~-gi~v~~~l~ell~~--------  100 (163)
                      .+++||+|+| +|.||+.+++.+.+.+   +++|++++|++.  .   .+.   ..+ +++.|+++++++..        
T Consensus         2 ~k~i~vgIiG-~G~VG~~~~~~l~~~~~g~~~~vvaV~d~~~--~---~~~---~~~~gi~~~~~~~e~l~~~~~~~~di   72 (358)
T 1ebf_A            2 TKVVNVAVIG-AGVVGSAFLDQLLAMKSTITYNLVLLAEAER--S---LIS---KDFSPLNVGSDWKAALAASTTKTLPL   72 (358)
T ss_dssp             CSEEEEEEEC-CSHHHHHHHHHHHHCCCSSEEEEEEEECSSB--E---EEC---SSCSCCSCTTCHHHHHHTCCCBCCCH
T ss_pred             CceEEEEEEe-cCHHHHHHHHHHHhcCCCCCEEEEEEEECCh--h---hhc---cccCCCCccccHHHHHhcccCCCCCH
Confidence            3579999999 6999999999999876   799999999642  1   111   122 55556777777652        


Q ss_pred             ------ccccCCccEEEEccCchhHHHHHHHHHHcCCcEEE--eCC-CCCHHHHHHHHHHhhhcCeE
Q 031216          101 ------ISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVV--YVP-HIQLETVSALSAFCDKASMV  158 (163)
Q Consensus       101 ------~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVi--gtt-g~~~e~~~~L~~~A~~~~Vv  158 (163)
                            +.....+|+|+|+|....+.+....|+++|||||+  .++ ..+.++.++|. +|++.++.
T Consensus        73 d~v~e~~~~~~~~DvVV~~t~~~~~a~~~~~AL~aGkhVVtaNkkpla~~~~~~~eL~-~A~~~gv~  138 (358)
T 1ebf_A           73 DDLIAHLKTSPKPVILVDNTSSAYIAGFYTKFVENGISIATPNKKAFSSDLATWKALF-SNKPTNGF  138 (358)
T ss_dssp             HHHHHHHTTCSSCEEEEECSCCHHHHTTHHHHHHTTCEEECCCCGGGSSCHHHHHHHT-CCCTTCCC
T ss_pred             HHHHHHhhhccCCcEEEEcCCChHHHHHHHHHHHCCCeEEecCcccccCCHHHHHHHH-HHHHcCCE
Confidence                  00011338999999766676666799999999999  444 56778899999 99998854

>2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus}

Probab=99.34  E-value=1.6e-12  Score=110.11  Aligned_cols=113  Identities=15%  Similarity=0.152  Sum_probs=87.9

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcC--------CcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCC
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKAR--------GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKA  106 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~--------~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~  106 (163)
                      ++||+|+| +|.||+.+++.+.+.+        +++|++++|++..  +...+     . ...+++|+++++       +
T Consensus         3 ~irvgIiG-~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~--~~~~~-----~-~~~~~~d~~~ll-------~   66 (332)
T 2ejw_A            3 ALKIALLG-GGTVGSAFYNLVLERAEELSAFGVVPRFLGVLVRDPR--KPRAI-----P-QELLRAEPFDLL-------E   66 (332)
T ss_dssp             EEEEEEEC-CSHHHHHHHHHHHHTGGGGGGGTEEEEEEEEECSCTT--SCCSS-----C-GGGEESSCCCCT-------T
T ss_pred             eeEEEEEc-CCHHHHHHHHHHHhChhhHhhcCCCEEEEEEEECCHH--Hhhcc-----C-cccccCCHHHHh-------C
Confidence            58999999 6999999999999887        7999999997532  11111     1 124678888876       6


Q ss_pred             ccEEEEccCch-hHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeEEcCCC
Q 031216          107 RAVVIDFTDAS-TVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVSTGSV  163 (163)
Q Consensus       107 ~DVVIDfT~p~-~~~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv~tg~~  163 (163)
                      +|+|+++|.+. .+.++++.|+++|||||+.......++.++|.++|++..++|.+++
T Consensus        67 iDvVve~t~~~~~a~~~~~~AL~aGKhVVtaNkkpla~~~~eL~~~A~~~~~~~Ea~v  124 (332)
T 2ejw_A           67 ADLVVEAMGGVEAPLRLVLPALEAGIPLITANKALLAEAWESLRPFAEEGLIYHEASV  124 (332)
T ss_dssp             CSEEEECCCCSHHHHHHHHHHHHTTCCEEECCHHHHHHSHHHHHHHHHTTCEECGGGT
T ss_pred             CCEEEECCCCcHHHHHHHHHHHHcCCeEEECCchhHHHHHHHHHHHHHhCCeEEEEEc
Confidence            89999999655 4578999999999999996443334788999999999887777654

>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A*

Probab=99.34  E-value=4e-12  Score=104.32  Aligned_cols=101  Identities=15%  Similarity=0.071  Sum_probs=85.6

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT  114 (163)
                      -+||+++| +|.||+.+++.   . ++||+++.+ ...|    ++       ++.+++|+|++++      ++|+|+++.
T Consensus        12 ~~rV~i~G-~GaIG~~v~~~---~-~leLv~v~~-~k~g----el-------gv~a~~d~d~lla------~pD~VVe~A   68 (253)
T 1j5p_A           12 HMTVLIIG-MGNIGKKLVEL---G-NFEKIYAYD-RISK----DI-------PGVVRLDEFQVPS------DVSTVVECA   68 (253)
T ss_dssp             CCEEEEEC-CSHHHHHHHHH---S-CCSEEEEEC-SSCC----CC-------SSSEECSSCCCCT------TCCEEEECS
T ss_pred             cceEEEEC-cCHHHHHHHhc---C-CcEEEEEEe-cccc----cc-------CceeeCCHHHHhh------CCCEEEECC
Confidence            38999999 79999999997   4 999999998 3322    21       5667899999884      899999999


Q ss_pred             CchhHHHHHHHHHHcCCcEEEeCCCC--CHHHHHHHHHHhhhcCeE
Q 031216          115 DASTVYDNVKQATAFGMRSVVYVPHI--QLETVSALSAFCDKASMV  158 (163)
Q Consensus       115 ~p~~~~~~~~~al~~G~~vVigttg~--~~e~~~~L~~~A~~~~Vv  158 (163)
                      .++...+++...|++|+++|+..+|.  +++..++|.++|++.+.-
T Consensus        69 ~~~av~e~~~~iL~aG~dvv~~S~gaLad~~l~~~L~~aA~~gg~~  114 (253)
T 1j5p_A           69 SPEAVKEYSLQILKNPVNYIIISTSAFADEVFRERFFSELKNSPAR  114 (253)
T ss_dssp             CHHHHHHHHHHHTTSSSEEEECCGGGGGSHHHHHHHHHHHHTCSCE
T ss_pred             CHHHHHHHHHHHHHCCCCEEEcChhhhcCHHHHHHHHHHHHHCCCe
Confidence            99999999999999999999977763  777789999999996643

>3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_B*

Probab=99.32  E-value=9.4e-12  Score=105.67  Aligned_cols=121  Identities=16%  Similarity=0.209  Sum_probs=96.7

Q ss_pred             CCeeEEEEcCCCHHHHHHHHH--HHhcCCcEEEEEEecCCCC--cchhhhccCCCCCCcceeCCHHHHHhcccccC-Ccc
Q 031216           34 SNIKVIINGAVKEIGRAAVIA--VTKARGMEVAGAIDSHSVG--EDIGMVCDMEQPLEIPVMSDLTMVLGSISQSK-ARA  108 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~--i~~~~~~eLvgvid~~~~g--~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~-~~D  108 (163)
                      +.+||.|.|++|++++.+++.  +.+.++.++++.+++...|  +++.  .|.+ ..++|+|.+++++.+.    . ++|
T Consensus         9 ~~tkviV~G~~Gk~~~~ml~~~~~~~r~~~~vVagV~P~~~g~~~~v~--~G~~-~~Gvpvy~sv~ea~~~----~p~~D   81 (334)
T 3mwd_B            9 RHTKAIVWGMQTRAVQGMLDFDYVCSRDEPSVAAMVYPFTGDHKQKFY--WGHK-EILIPVFKNMADAMRK----HPEVD   81 (334)
T ss_dssp             TTCCEEEESCCHHHHHHHHHHHHHTTCSSCSEEEEECTTSCSEEEEEE--ETTE-EEEEEEESSHHHHHHH----CTTCC
T ss_pred             CCCeEEEECCchHHHHHHHHhcccccCCCceEEEEEcCCCCCccceEe--ccCc-cCCceeeCCHHHHhhc----CCCCc
Confidence            458999999999999888777  6677999999999976543  4432  2332 4589999999998863    3 589


Q ss_pred             EEEEccCchhHHHHHHHHHH-cCCcEEEe-CCCCCHHHHHHHHHHhhhcCeEEcC
Q 031216          109 VVIDFTDASTVYDNVKQATA-FGMRSVVY-VPHIQLETVSALSAFCDKASMVSTG  161 (163)
Q Consensus       109 VVIDfT~p~~~~~~~~~al~-~G~~vVig-ttg~~~e~~~~L~~~A~~~~Vv~tg  161 (163)
                      ++|+|++|..+.+.+..++. +|++.|+. |+|++.++..+|.++|++.++..-|
T Consensus        82 laVi~vp~~~a~~ai~ea~~~~Gv~~vViiT~G~~e~~~~~l~~~a~~~g~rliG  136 (334)
T 3mwd_B           82 VLINFASLRSAYDSTMETMNYAQIRTIAIIAEGIPEALTRKLIKKADQKGVTIIG  136 (334)
T ss_dssp             EEEECCCTTTHHHHHHHHTTSTTCCEEEECCSCCCHHHHHHHHHHHHHHTCEEEC
T ss_pred             EEEEecCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEEc
Confidence            99999999988877766666 99987766 7799998889999999998876544

>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1

Probab=99.29  E-value=1.3e-11  Score=104.13  Aligned_cols=96  Identities=21%  Similarity=0.247  Sum_probs=74.7

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhc---cCC------------CCCCcceeCCHHHHHh
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC---DME------------QPLEIPVMSDLTMVLG   99 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~---g~~------------~~~gi~v~~~l~ell~   99 (163)
                      |+||||+|+ |+||+.+++.+.++|+++|+++.|+..  +.+..++   |.+            ...++.++.++++++.
T Consensus         2 ~irVgIiG~-G~iG~~~~r~l~~~~~~elvav~d~~~--~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~v~~d~~~l~~   78 (334)
T 2czc_A            2 KVKVGVNGY-GTIGKRVAYAVTKQDDMELIGITKTKP--DFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLE   78 (334)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHTCTTEEEEEEEESSC--SHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHT
T ss_pred             CcEEEEEeE-hHHHHHHHHHHhcCCCCEEEEEEcCCH--HHHHHHHHhcCccccccccccceeccCCceEEcCcHHHhcc
Confidence            689999995 999999999999999999999999642  2222221   100            0012356789999884


Q ss_pred             cccccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeCCC
Q 031216          100 SISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPH  139 (163)
Q Consensus       100 ~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigttg  139 (163)
                            ++|+|+++|.+..+.+++..++++|++|++.++.
T Consensus        79 ------~vDvV~~aTp~~~h~~~a~~~l~aGk~Vi~sap~  112 (334)
T 2czc_A           79 ------KVDIIVDATPGGIGAKNKPLYEKAGVKAIFQGGE  112 (334)
T ss_dssp             ------TCSEEEECCSTTHHHHHHHHHHHHTCEEEECTTS
T ss_pred             ------CCCEEEECCCccccHHHHHHHHHcCCceEeeccc
Confidence                  8999998887788899999999999999997764

>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1

Probab=99.19  E-value=6.3e-11  Score=99.34  Aligned_cols=98  Identities=20%  Similarity=0.252  Sum_probs=76.2

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHh-cCCcEEEEEEecCCC--CcchhhhccCCCCCCcc-eeCCHHHHHhcccccCCccE
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTK-ARGMEVAGAIDSHSV--GEDIGMVCDMEQPLEIP-VMSDLTMVLGSISQSKARAV  109 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~-~~~~eLvgvid~~~~--g~~~~~l~g~~~~~gi~-v~~~l~ell~~~~~~~~~DV  109 (163)
                      +++||+|+| +|.||+.+++.+.+ ++++++++++|+...  +.+..+      ..+++ .+++++++++.- ...++|+
T Consensus         3 ~~irVaIIG-~G~iG~~~~~~l~~~~~~~elvav~d~~~~~~~~~~a~------~~g~~~~~~~~e~ll~~~-~~~~iDv   74 (312)
T 1nvm_B            3 QKLKVAIIG-SGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQ------RMGVTTTYAGVEGLIKLP-EFADIDF   74 (312)
T ss_dssp             SCEEEEEEC-CSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHH------HTTCCEESSHHHHHHHSG-GGGGEEE
T ss_pred             CCCEEEEEc-CcHHHHHHHHHHHhhCcCeEEEEEEeCChhhhHHHHHH------HcCCCcccCCHHHHHhcc-CCCCCcE
Confidence            469999999 69999999999976 899999999996532  233332      23444 356788887510 0036899


Q ss_pred             EEEccCchhHHHHHHHHHHc--CCcEEEeCCC
Q 031216          110 VIDFTDASTVYDNVKQATAF--GMRSVVYVPH  139 (163)
Q Consensus       110 VIDfT~p~~~~~~~~~al~~--G~~vVigttg  139 (163)
                      |+++|.++.+.+++..++++  |+||++.++.
T Consensus        75 V~~atp~~~h~~~a~~al~a~~Gk~Vi~ekp~  106 (312)
T 1nvm_B           75 VFDATSASAHVQNEALLRQAKPGIRLIDLTPA  106 (312)
T ss_dssp             EEECSCHHHHHHHHHHHHHHCTTCEEEECSTT
T ss_pred             EEECCChHHHHHHHHHHHHhCCCCEEEEcCcc
Confidence            99999888899999999999  9999999884

>1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1

Probab=99.15  E-value=1.9e-10  Score=97.39  Aligned_cols=93  Identities=16%  Similarity=0.220  Sum_probs=69.0

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccC---C-----------CCCCcceeCCHHHHHhc
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDM---E-----------QPLEIPVMSDLTMVLGS  100 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~---~-----------~~~gi~v~~~l~ell~~  100 (163)
                      |+||||+|+ |+||+.+++.+.++|+++|+++.|+...  ....++..   +           ...++++++++++++. 
T Consensus         1 ~ikVgIiGa-G~iG~~~~r~L~~~p~~elvav~d~~~~--~~~~~a~~~g~~~~~~~~~~~~~~~~~v~v~~~~e~l~~-   76 (340)
T 1b7g_O            1 MVNVAVNGY-GTIGKRVADAIIKQPDMKLVGVAKTSPN--YEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIK-   76 (340)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHTCTTEEEEEEECSSCS--HHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHH-
T ss_pred             CeEEEEEec-CHHHHHHHHHHHcCCCCEEEEEEcCChH--HHHHHHHhcCcceecCcCHHHHhcccccccccCHhHhhc-
Confidence            589999997 9999999999999999999999996421  11111100   0           0223344445556553 


Q ss_pred             ccccCCccEEEEccCchhHHHHHHHHHHcCCcEEEe
Q 031216          101 ISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVY  136 (163)
Q Consensus       101 ~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVig  136 (163)
                           ++|+|+++|.+....+++..++++|+++|.-
T Consensus        77 -----~vDvV~~aTp~~~s~~~a~~~~~aG~kvV~~  107 (340)
T 1b7g_O           77 -----TSDIVVDTTPNGVGAQYKPIYLQLQRNAIFQ  107 (340)
T ss_dssp             -----HCSEEEECCSTTHHHHHHHHHHHTTCEEEEC
T ss_pred             -----CCCEEEECCCCchhHHHHHHHHHcCCeEEEe
Confidence                 7999999998888899999999999998873

>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A*

Probab=99.15  E-value=5.6e-10  Score=93.39  Aligned_cols=112  Identities=12%  Similarity=0.117  Sum_probs=91.3

Q ss_pred             eeEEEE-cCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc
Q 031216           36 IKVIIN-GAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (163)
Q Consensus        36 irV~Vv-Ga~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT  114 (163)
                      -+++|+ |++|++|+.+++.+.+ .++++++.+++...|.   +      -.|+++|.+++++.++    .++|+++.|+
T Consensus        14 ~siaVV~Gasg~~G~~~~~~l~~-~G~~~v~~VnP~~~g~---~------i~G~~vy~sl~el~~~----~~vD~avI~v   79 (305)
T 2fp4_A           14 NTKVICQGFTGKQGTFHSQQALE-YGTNLVGGTTPGKGGK---T------HLGLPVFNTVKEAKEQ----TGATASVIYV   79 (305)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHH-HTCEEEEEECTTCTTC---E------ETTEEEESSHHHHHHH----HCCCEEEECC
T ss_pred             CcEEEEECCCCCHHHHHHHHHHH-CCCcEEEEeCCCcCcc---e------ECCeeeechHHHhhhc----CCCCEEEEec
Confidence            446777 9999999999998875 5788877777643332   1      2478999999998853    4899999999


Q ss_pred             CchhHHHHHHHHHHcCCcE-EEeCCCCCHHHHHHHHHHhhhc-CeEEcC
Q 031216          115 DASTVYDNVKQATAFGMRS-VVYVPHIQLETVSALSAFCDKA-SMVSTG  161 (163)
Q Consensus       115 ~p~~~~~~~~~al~~G~~v-Vigttg~~~e~~~~L~~~A~~~-~Vv~tg  161 (163)
                      +|+.+.+.++.|++.|++. |+-++|++.++..+|.++|++. ++..-|
T Consensus        80 P~~~~~~~~~e~i~~Gi~~iv~~t~G~~~~~~~~l~~~a~~~~gi~liG  128 (305)
T 2fp4_A           80 PPPFAAAAINEAIDAEVPLVVCITEGIPQQDMVRVKHRLLRQGKTRLIG  128 (305)
T ss_dssp             CHHHHHHHHHHHHHTTCSEEEECCCCCCHHHHHHHHHHHTTCSSCEEEC
T ss_pred             CHHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHhcCCcEEEe
Confidence            9999999999999999988 6778899887778999999998 876654

>2g0t_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.67A {Thermotoga maritima} SCOP: c.37.1.10

Probab=99.12  E-value=1.8e-10  Score=98.37  Aligned_cols=116  Identities=13%  Similarity=0.114  Sum_probs=93.8

Q ss_pred             CeeEEEEcCCCHHHHHHHHHH---Hhc-CCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEE
Q 031216           35 NIKVIINGAVKEIGRAAVIAV---TKA-RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVV  110 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i---~~~-~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVV  110 (163)
                      .-|++|+| .|.||+..++.+   .+. +..++||++ +...|+|++++++.. +.++++++|++++++     ..+|++
T Consensus        22 ~~~~vi~~-~g~~g~~~aKta~gllr~~~~~~iVgvi-~~~~Gkd~ge~~~g~-~~gipv~~d~~~al~-----~~~d~l   93 (350)
T 2g0t_A           22 GTPAAIVA-WGQLGTAHAKTTYGLLRHSRLFKPVCVV-AEHEGKMASDFVKPV-RYDVPVVSSVEKAKE-----MGAEVL   93 (350)
T ss_dssp             TEEEEEEC-TTTTTSGGGHHHHHHHHHCSSEEEEEEE-SSCTTCBGGGTCC-C-CSCCBEESSHHHHHH-----TTCCEE
T ss_pred             CCCEEEEe-CCCCChHHHHHHHHHHhhCCCCeEEEEe-ecCCCCcHHHhhCCC-CCCceeeCCHHHHHh-----cCCCEE
Confidence            45899999 799998888854   566 779999999 888999999998432 579999999999997     479999


Q ss_pred             EEcc------CchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeEE
Q 031216          111 IDFT------DASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVS  159 (163)
Q Consensus       111 IDfT------~p~~~~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv~  159 (163)
                      +..+      .|+.+.+.++.|+++|++||+|-..+ ..+.++|.++|++.++-+
T Consensus        94 vig~a~~gg~l~~~~~~~I~~Al~~G~nVvsglh~~-l~~~pel~~~A~~~Gv~i  147 (350)
T 2g0t_A           94 IIGVSNPGGYLEEQIATLVKKALSLGMDVISGLHFK-ISQQTEFLKIAHENGTRI  147 (350)
T ss_dssp             EECCCSCCHHHHHHHHHHHHHHHHTTCEEEECCCC---CCHHHHHHHHHHHTCCE
T ss_pred             EEEecCCCCCCCHHHHHHHHHHHHcCCcEEeCChhh-hhCCHHHHHHHHHCCCEE
Confidence            9764      34566789999999999999988765 445577999999877644

>1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1

Probab=99.11  E-value=1.1e-10  Score=98.91  Aligned_cols=96  Identities=20%  Similarity=0.203  Sum_probs=72.4

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccC---------C------CCCCcceeCCHHHHHh
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDM---------E------QPLEIPVMSDLTMVLG   99 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~---------~------~~~gi~v~~~l~ell~   99 (163)
                      |+||+|+|+ |+||+.+++.+.++|+++|+++.|....  ....+++.         .      ...++.+..++++++.
T Consensus         1 mikVgIiGa-G~iG~~l~r~L~~~~~~elvav~d~~~~--~~~~~~~~~g~~~~~~~~~~v~~~~~~~l~v~~~~~~~~~   77 (337)
T 1cf2_P            1 MKAVAINGY-GTVGKRVADAIAQQDDMKVIGVSKTRPD--FEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLD   77 (337)
T ss_dssp             CEEEEEECC-STTHHHHHHHHHTSSSEEEEEEEESSCS--HHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHH
T ss_pred             CeEEEEEeE-CHHHHHHHHHHHcCCCcEEEEEEcCChh--HHHHhcCCcchhhccccccceeeecCCceEEcCCHHHHhc
Confidence            689999997 9999999999999999999999985421  11111110         0      0123344456777774


Q ss_pred             cccccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeCCC
Q 031216          100 SISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPH  139 (163)
Q Consensus       100 ~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigttg  139 (163)
                            ++|+|+++|.+..+.+++..++++|++||..++.
T Consensus        78 ------~vDvV~~atp~~~~~~~a~~~l~aG~~VId~sp~  111 (337)
T 1cf2_P           78 ------EADIVIDCTPEGIGAKNLKMYKEKGIKAIFQGGE  111 (337)
T ss_dssp             ------TCSEEEECCSTTHHHHHHHHHHHHTCCEEECTTS
T ss_pred             ------CCCEEEECCCchhhHHHHHHHHHcCCEEEEecCC
Confidence                  8999999988888899999999999999987765

>2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis}

Probab=99.07  E-value=2.2e-10  Score=97.84  Aligned_cols=113  Identities=13%  Similarity=0.105  Sum_probs=95.2

Q ss_pred             eeEEEEcCCCHHHHHHHHHH---HhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEE
Q 031216           36 IKVIINGAVKEIGRAAVIAV---TKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i---~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVID  112 (163)
                      -|++|++ .|.+|+..++.+   .+.++.++||++|++..|+|+++++|.  +.++|++.|++++++     .++|++|.
T Consensus         8 ~~~vi~~-~g~~~~~~aKta~gl~r~~~~~iVgvid~~~~G~d~ge~~g~--~~gipi~~~l~~al~-----~~~d~lvi   79 (349)
T 2obn_A            8 QRVAILL-HEGTTGTIGKTGLALLRYSEAPIVAVIDRNCAGQSLREITGI--YRYVPIVKSVEAALE-----YKPQVLVI   79 (349)
T ss_dssp             CCEEEEC-TTTSSSSSCHHHHHHHHHCCSCEEEEECGGGTTSCHHHHHCC--CSCCCEESSHHHHGG-----GCCSEEEE
T ss_pred             CcEEEEe-CCCCCcHHHHHhHHhhhcCCCcEEEEEeCCCCCCcHHHhcCC--cCCCCccCCHHHHHh-----CCCCEEEE
Confidence            4689998 799998877776   778889999999988999999999996  689999999999997     58999987


Q ss_pred             cc------CchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeE
Q 031216          113 FT------DASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMV  158 (163)
Q Consensus       113 fT------~p~~~~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv  158 (163)
                      -+      .|+.+.+.+..|+++|++||.|-..+- .+.++|.++|++ ++-
T Consensus        80 g~a~~gG~l~~~~~~~i~~Al~~G~~Vvsglh~~l-~~~pel~~~A~~-g~~  129 (349)
T 2obn_A           80 GIAPKGGGIPDDYWIELKTALQAGMSLVNGLHTPL-ANIPDLNALLQP-GQL  129 (349)
T ss_dssp             CCCCCCC-SCGGGHHHHHHHHHTTCEEEECSSSCC-TTCHHHHHHCCT-TCC
T ss_pred             EecCCCCCCCHHHHHHHHHHHHcCCcEEeCccchh-hCCHHHHHHHHc-CCE
Confidence            65      467788999999999999999877432 223559999998 764

>3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A

Probab=99.05  E-value=1.1e-09  Score=92.91  Aligned_cols=101  Identities=20%  Similarity=0.189  Sum_probs=75.1

Q ss_pred             CCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC---CCCcchhhhccCCCC-CCcceeC--CHHHHHhcccccCC
Q 031216           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH---SVGEDIGMVCDMEQP-LEIPVMS--DLTMVLGSISQSKA  106 (163)
Q Consensus        33 ~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~---~~g~~~~~l~g~~~~-~gi~v~~--~l~ell~~~~~~~~  106 (163)
                      +.|+||+|+|++|++|+++++.+.++|+++++++..++   ..|+++.++...... .+..+.+  +.+++.      .+
T Consensus         2 ~~M~kv~IvGatG~vG~~l~~~L~~~p~~el~~l~s~~~~~saGk~~~~~~p~~~~~~~~~v~~~~~~~~~~------~~   75 (337)
T 3dr3_A            2 NAMLNTLIVGASGYAGAELVTYVNRHPHMNITALTVSAQSNDAGKLISDLHPQLKGIVELPLQPMSDISEFS------PG   75 (337)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTSBHHHHCGGGTTTCCCBEEEESSGGGTC------TT
T ss_pred             CCceEEEEECCCChHHHHHHHHHHhCCCCcEEEEEecCchhhcCCchHHhCccccCccceeEeccCCHHHHh------cC
Confidence            45899999999999999999999999999999998876   788887765431101 1334333  444443      38


Q ss_pred             ccEEEEccCchhH-HHHHHHHHHcCCcEEEeCCCC
Q 031216          107 RAVVIDFTDASTV-YDNVKQATAFGMRSVVYVPHI  140 (163)
Q Consensus       107 ~DVVIDfT~p~~~-~~~~~~al~~G~~vVigttg~  140 (163)
                      +|+|+ ++.|... .+++..+++.|+.||--+..+
T Consensus        76 ~Dvvf-~a~p~~~s~~~~~~~~~~g~~vIDlSa~f  109 (337)
T 3dr3_A           76 VDVVF-LATAHEVSHDLAPQFLEAGCVVFDLSGAF  109 (337)
T ss_dssp             CSEEE-ECSCHHHHHHHHHHHHHTTCEEEECSSTT
T ss_pred             CCEEE-ECCChHHHHHHHHHHHHCCCEEEEcCCcc
Confidence            99999 5555554 789999999999988755544

>2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii}

Probab=98.98  E-value=3.2e-09  Score=90.01  Aligned_cols=99  Identities=16%  Similarity=0.153  Sum_probs=69.7

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe-cCCCCcchhhhccCCC-------CCCcceeC-CHHHHHhccccc
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID-SHSVGEDIGMVCDMEQ-------PLEIPVMS-DLTMVLGSISQS  104 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid-~~~~g~~~~~l~g~~~-------~~gi~v~~-~l~ell~~~~~~  104 (163)
                      +|+||+|+||+|++|+.+++.+.++|+++|+++.+ ++..|+...+..+...       ...+.+.+ ++++ +      
T Consensus         3 ~~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~------   75 (350)
T 2ep5_A            3 DKIKVSLLGSTGMVGQKMVKMLAKHPYLELVKVSASPSKIGKKYKDAVKWIEQGDIPEEVQDLPIVSTNYED-H------   75 (350)
T ss_dssp             CCEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECCGGGTTSBHHHHCCCCSSSSCCHHHHTCBEECSSGGG-G------
T ss_pred             CCcEEEEECcCCHHHHHHHHHHHhCCCcEEEEEecChhhcCCCHHHhcCcccccccccCCceeEEeeCCHHH-h------
Confidence            46999999999999999999999999999999984 4345655544332100       01222221 3333 3      


Q ss_pred             CCccEEEEccCchhHHHHHHHHHHcCCcEEEeCCC
Q 031216          105 KARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPH  139 (163)
Q Consensus       105 ~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigttg  139 (163)
                      .++|+|+.++....+.+.+..++++|++||.....
T Consensus        76 ~~vDvVf~atp~~~s~~~a~~~~~aG~~VId~s~~  110 (350)
T 2ep5_A           76 KDVDVVLSALPNELAESIELELVKNGKIVVSNASP  110 (350)
T ss_dssp             TTCSEEEECCCHHHHHHHHHHHHHTTCEEEECSST
T ss_pred             cCCCEEEECCChHHHHHHHHHHHHCCCEEEECCcc
Confidence            28999996655566789999999999998875543

>2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus}

Probab=98.96  E-value=3.8e-09  Score=89.52  Aligned_cols=98  Identities=12%  Similarity=0.054  Sum_probs=71.5

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCC-CCcceeCCHHHHHhcccccCCccEEEEc
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQP-LEIPVMSDLTMVLGSISQSKARAVVIDF  113 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~-~gi~v~~~l~ell~~~~~~~~~DVVIDf  113 (163)
                      |+||+|+||+|++|+.+++.+.++|+++|+++.++...|++..+..+.... ..+. +.++++ +      .++|+|+.+
T Consensus         4 ~~kV~IiGAtG~iG~~llr~L~~~p~~elv~v~s~~~~g~~~~~~~~~~~g~~~~~-~~~~~~-~------~~vDvV~~a   75 (345)
T 2ozp_A            4 KKTLSIVGASGYAGGEFLRLALSHPYLEVKQVTSRRFAGEPVHFVHPNLRGRTNLK-FVPPEK-L------EPADILVLA   75 (345)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCTTEEEEEEBCSTTTTSBGGGTCGGGTTTCCCB-CBCGGG-C------CCCSEEEEC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHcCCCcEEEEEECchhhCchhHHhCchhcCccccc-ccchhH-h------cCCCEEEEc
Confidence            689999999999999999999999999999998866566665553321101 1222 234543 3      389999966


Q ss_pred             cCchhHHHHHHHHHHcCCcEEEeCCCC
Q 031216          114 TDASTVYDNVKQATAFGMRSVVYVPHI  140 (163)
Q Consensus       114 T~p~~~~~~~~~al~~G~~vVigttg~  140 (163)
                      +....+.+.+..++++|++||.-+..+
T Consensus        76 ~g~~~s~~~a~~~~~aG~~VId~Sa~~  102 (345)
T 2ozp_A           76 LPHGVFAREFDRYSALAPVLVDLSADF  102 (345)
T ss_dssp             CCTTHHHHTHHHHHTTCSEEEECSSTT
T ss_pred             CCcHHHHHHHHHHHHCCCEEEEcCccc
Confidence            655666899999999999988754433

>1r0k_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; NADPH dependent, fosmidomycin, non- mevalonate pathway, oxidoreductase; 1.91A {Zymomonas mobilis} SCOP: a.69.3.1 c.2.1.3 d.81.1.3 PDB: 1r0l_A*

Probab=98.91  E-value=3.3e-09  Score=91.63  Aligned_cols=122  Identities=8%  Similarity=-0.007  Sum_probs=85.3

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCC-cEEEEE-EecCCC---------Cc------c---hhhhc-cCCCCCCccee-
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARG-MEVAGA-IDSHSV---------GE------D---IGMVC-DMEQPLEIPVM-   91 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~-~eLvgv-id~~~~---------g~------~---~~~l~-g~~~~~gi~v~-   91 (163)
                      .|+||+|+|++|.+|+.+++.+.++|+ ++++++ .++...         +-      |   ..++- .+. ..++.++ 
T Consensus         3 ~m~rI~ILGsTGSIG~~~l~vi~~~p~~~~v~al~ag~ni~~l~~~~~~f~~~~v~v~d~~~~~~l~~~l~-~~~~~v~~   81 (388)
T 1r0k_A            3 QPRTVTVLGATGSIGHSTLDLIERNLDRYQVIALTANRNVKDLADAAKRTNAKRAVIADPSLYNDLKEALA-GSSVEAAA   81 (388)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTGGGEEEEEEEESSCHHHHHHHHHHTTCSEEEESCGGGHHHHHHHTT-TCSSEEEE
T ss_pred             CceEEEEECCCeEeHHHHHHHHHhCcCcEEEEEEEcCCCHHHHHHHHHHcCCcEEEEcChHHHHHHHHHhc-cCCcEEEe
Confidence            369999999889999999999999998 999988 443210         00      0   00000 000 1112222 


Q ss_pred             --CCHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeEEcC
Q 031216           92 --SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVSTG  161 (163)
Q Consensus        92 --~~l~ell~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv~tg  161 (163)
                        +++++++.    .+ +|+|++.+.-....+.+..|+++||||++..-+......+.|.++|+++|+.+.+
T Consensus        82 g~~~~~el~~----~~-iDvVV~ai~G~aGl~ptlaAi~aGK~VvlANKE~lv~~G~~l~~~A~~~gv~liP  148 (388)
T 1r0k_A           82 GADALVEAAM----MG-ADWTMAAIIGCAGLKATLAAIRKGKTVALANKESLVSAGGLMIDAVREHGTTLLP  148 (388)
T ss_dssp             SHHHHHHHHT----SC-CSEEEECCCSGGGHHHHHHHHHTTSEEEECCSHHHHTTHHHHHHHHHHHTCEEEE
T ss_pred             CccHHHHHHc----CC-CCEEEEeCCCHHHHHHHHHHHHCCCEEEEeCcHHHHhhHHHHHHHHHHcCCEEEE
Confidence              33345554    25 9999998866667889999999999999986666667788999999998887643

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=98.89  E-value=9.8e-10  Score=92.85  Aligned_cols=112  Identities=23%  Similarity=0.272  Sum_probs=73.0

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCC--CCcceeCCHHHHHhcccccCCccEEEE
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQP--LEIPVMSDLTMVLGSISQSKARAVVID  112 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~--~gi~v~~~l~ell~~~~~~~~~DVVID  112 (163)
                      +|||+|+|| |++|+.+++.+.+..++.+   +|+..  .++..+......  .++.-.+++++++      .+.|+||.
T Consensus        16 ~mkilvlGa-G~vG~~~~~~L~~~~~v~~---~~~~~--~~~~~~~~~~~~~~~d~~d~~~l~~~~------~~~DvVi~   83 (365)
T 3abi_A           16 HMKVLILGA-GNIGRAIAWDLKDEFDVYI---GDVNN--ENLEKVKEFATPLKVDASNFDKLVEVM------KEFELVIG   83 (365)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHTTTSEEEE---EESCH--HHHHHHTTTSEEEECCTTCHHHHHHHH------TTCSEEEE
T ss_pred             ccEEEEECC-CHHHHHHHHHHhcCCCeEE---EEcCH--HHHHHHhccCCcEEEecCCHHHHHHHH------hCCCEEEE
Confidence            589999996 9999999999876554433   34321  111111110000  1111112334444      48999999


Q ss_pred             ccCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeEEc
Q 031216          113 FTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVST  160 (163)
Q Consensus       113 fT~p~~~~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv~t  160 (163)
                      ++.|..+...++.|+++|+|+|- .+ ++.+...+|.+.|++++++.-
T Consensus        84 ~~p~~~~~~v~~~~~~~g~~yvD-~s-~~~~~~~~l~~~a~~~g~~~i  129 (365)
T 3abi_A           84 ALPGFLGFKSIKAAIKSKVDMVD-VS-FMPENPLELRDEAEKAQVTIV  129 (365)
T ss_dssp             CCCGGGHHHHHHHHHHHTCEEEE-CC-CCSSCGGGGHHHHHHTTCEEE
T ss_pred             ecCCcccchHHHHHHhcCcceEe-ee-ccchhhhhhhhhhccCCceee
Confidence            88888889999999999999876 33 444456778899999887653

>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*

Probab=98.86  E-value=1.9e-08  Score=75.21  Aligned_cols=105  Identities=17%  Similarity=0.144  Sum_probs=80.8

Q ss_pred             CeeEEEEcCC---CHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEE
Q 031216           35 NIKVIINGAV---KEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI  111 (163)
Q Consensus        35 ~irV~VvGa~---G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVI  111 (163)
                      +.+|+|+|++   |++|..+++.+.+ .++++.. +++.  +   .++      .|+++|.+++++.+      .+|+++
T Consensus        22 p~~iaVVGas~~~g~~G~~~~~~l~~-~G~~v~~-Vnp~--~---~~i------~G~~~y~sl~~l~~------~vDlvv   82 (144)
T 2d59_A           22 YKKIALVGASPKPERDANIVMKYLLE-HGYDVYP-VNPK--Y---EEV------LGRKCYPSVLDIPD------KIEVVD   82 (144)
T ss_dssp             CCEEEEETCCSCTTSHHHHHHHHHHH-TTCEEEE-ECTT--C---SEE------TTEECBSSGGGCSS------CCSEEE
T ss_pred             CCEEEEEccCCCCCchHHHHHHHHHH-CCCEEEE-ECCC--C---CeE------CCeeccCCHHHcCC------CCCEEE
Confidence            4689999987   8999999999874 6787332 2322  2   122      36789999999753      899999


Q ss_pred             EccCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeEEcC
Q 031216          112 DFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVSTG  161 (163)
Q Consensus       112 DfT~p~~~~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv~tg  161 (163)
                      .++.++.+.+.++.|++.|++.++-.+|..   .++|.++|++.|+-+-|
T Consensus        83 i~vp~~~~~~vv~~~~~~gi~~i~~~~g~~---~~~l~~~a~~~Gi~vvG  129 (144)
T 2d59_A           83 LFVKPKLTMEYVEQAIKKGAKVVWFQYNTY---NREASKKADEAGLIIVA  129 (144)
T ss_dssp             ECSCHHHHHHHHHHHHHHTCSEEEECTTCC---CHHHHHHHHHTTCEEEE
T ss_pred             EEeCHHHHHHHHHHHHHcCCCEEEECCCch---HHHHHHHHHHcCCEEEc
Confidence            888888889999999999999888787764   36688888888776543

>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8

Probab=98.85  E-value=2.5e-08  Score=74.19  Aligned_cols=106  Identities=14%  Similarity=0.197  Sum_probs=79.2

Q ss_pred             CCeeEEEEcCC---CHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEE
Q 031216           34 SNIKVIINGAV---KEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVV  110 (163)
Q Consensus        34 ~~irV~VvGa~---G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVV  110 (163)
                      .+.+|+|+|++   |+||+.+++.+.+ .++++. .+++.  +.   +      -.|.++|.|++++.+      .+|++
T Consensus        13 ~p~~IavIGaS~~~g~~G~~~~~~L~~-~G~~V~-~vnp~--~~---~------i~G~~~~~s~~el~~------~vDlv   73 (138)
T 1y81_A           13 EFRKIALVGASKNPAKYGNIILKDLLS-KGFEVL-PVNPN--YD---E------IEGLKCYRSVRELPK------DVDVI   73 (138)
T ss_dssp             -CCEEEEETCCSCTTSHHHHHHHHHHH-TTCEEE-EECTT--CS---E------ETTEECBSSGGGSCT------TCCEE
T ss_pred             CCCeEEEEeecCCCCCHHHHHHHHHHH-CCCEEE-EeCCC--CC---e------ECCeeecCCHHHhCC------CCCEE
Confidence            45789999954   9999999999875 688833 34432  11   1      136788999998764      89999


Q ss_pred             EEccCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeEEcC
Q 031216          111 IDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVSTG  161 (163)
Q Consensus       111 IDfT~p~~~~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv~tg  161 (163)
                      +-+..++.+.+.+..+++.|++.++-.++..   .++|.++|++.|+-+-|
T Consensus        74 ii~vp~~~v~~v~~~~~~~g~~~i~~~~~~~---~~~l~~~a~~~Gi~~ig  121 (138)
T 1y81_A           74 VFVVPPKVGLQVAKEAVEAGFKKLWFQPGAE---SEEIRRFLEKAGVEYSF  121 (138)
T ss_dssp             EECSCHHHHHHHHHHHHHTTCCEEEECTTSC---CHHHHHHHHHHTCEEEC
T ss_pred             EEEeCHHHHHHHHHHHHHcCCCEEEEcCccH---HHHHHHHHHHCCCEEEc
Confidence            9888887788999999999988777666432   46688888888876654

>1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii}

Probab=98.82  E-value=2.1e-08  Score=85.01  Aligned_cols=98  Identities=16%  Similarity=0.097  Sum_probs=69.0

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe-cCCCCcchhhhccCCC-------CCCccee-CCHHHHHhcccccC
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID-SHSVGEDIGMVCDMEQ-------PLEIPVM-SDLTMVLGSISQSK  105 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid-~~~~g~~~~~l~g~~~-------~~gi~v~-~~l~ell~~~~~~~  105 (163)
                      |+||+|+||+|++|+.+++.+.++|+++|+++.+ +...|+...+..+...       ...+.+. .+++++++     .
T Consensus         8 ~~kV~IiGAtG~iG~~llr~L~~~p~~ev~~i~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~   82 (354)
T 1ys4_A            8 KIKVGVLGATGSVGQRFVQLLADHPMFELTALAASERSAGKKYKDACYWFQDRDIPENIKDMVVIPTDPKHEEF-----E   82 (354)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHHHHSCCCCSSCCCHHHHTCBCEESCTTSGGG-----T
T ss_pred             cceEEEECcCCHHHHHHHHHHhcCCCCEEEEEEcccccccccHHHhcccccccccccCceeeEEEeCCHHHHhc-----C
Confidence            4899999999999999999999999999999985 4445666554432110       0111121 24444332     2


Q ss_pred             CccEEEEccCchhHHHHHHHHHHcCCcEEEeC
Q 031216          106 ARAVVIDFTDASTVYDNVKQATAFGMRSVVYV  137 (163)
Q Consensus       106 ~~DVVIDfT~p~~~~~~~~~al~~G~~vVigt  137 (163)
                      ++|+|+.++....+.+.+..+++.|++||--.
T Consensus        83 ~~DvV~~atp~~~~~~~a~~~~~aG~~VId~s  114 (354)
T 1ys4_A           83 DVDIVFSALPSDLAKKFEPEFAKEGKLIFSNA  114 (354)
T ss_dssp             TCCEEEECCCHHHHHHHHHHHHHTTCEEEECC
T ss_pred             CCCEEEECCCchHHHHHHHHHHHCCCEEEECC
Confidence            79999966655666889999999999977543

>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}

Probab=98.78  E-value=2.2e-08  Score=74.97  Aligned_cols=107  Identities=12%  Similarity=0.138  Sum_probs=77.9

Q ss_pred             CeeEEEEcCC---CHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEE
Q 031216           35 NIKVIINGAV---KEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI  111 (163)
Q Consensus        35 ~irV~VvGa~---G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVI  111 (163)
                      +.+|+|+|++   |+||..+++.+.+ .+++ +..+++...|..         -.|+++|.|++++.      ..+|+++
T Consensus        13 p~~IavIGas~~~g~~G~~~~~~L~~-~G~~-v~~vnp~~~g~~---------i~G~~~~~sl~el~------~~~Dlvi   75 (145)
T 2duw_A           13 TRTIALVGASDKPDRPSYRVMKYLLD-QGYH-VIPVSPKVAGKT---------LLGQQGYATLADVP------EKVDMVD   75 (145)
T ss_dssp             CCCEEEESCCSCTTSHHHHHHHHHHH-HTCC-EEEECSSSTTSE---------ETTEECCSSTTTCS------SCCSEEE
T ss_pred             CCEEEEECcCCCCCChHHHHHHHHHH-CCCE-EEEeCCcccccc---------cCCeeccCCHHHcC------CCCCEEE
Confidence            4679999976   8999999999874 4677 334454332221         23778899998875      3899999


Q ss_pred             EccCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeEEcC
Q 031216          112 DFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVSTG  161 (163)
Q Consensus       112 DfT~p~~~~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv~tg  161 (163)
                      .+++++.+.+.+..+++.|+..|+-.++..   .++|.++|++.|+-+-|
T Consensus        76 i~vp~~~v~~v~~~~~~~g~~~i~i~~~~~---~~~l~~~a~~~Gi~~ig  122 (145)
T 2duw_A           76 VFRNSEAAWGVAQEAIAIGAKTLWLQLGVI---NEQAAVLAREAGLSVVM  122 (145)
T ss_dssp             CCSCSTHHHHHHHHHHHHTCCEEECCTTCC---CHHHHHHHHTTTCEEEC
T ss_pred             EEeCHHHHHHHHHHHHHcCCCEEEEcCChH---HHHHHHHHHHcCCEEEc
Confidence            788877778889899999966554444332   46788889999887765

>2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A*

Probab=98.78  E-value=2e-08  Score=80.02  Aligned_cols=92  Identities=13%  Similarity=0.141  Sum_probs=65.9

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcce--eCCHHHHHhcccccCCccEEE
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV--MSDLTMVLGSISQSKARAVVI  111 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v--~~~l~ell~~~~~~~~~DVVI  111 (163)
                      ...||+|+|+ |.+|+.+++.+....+++++|++|.+..  ..+...     .++++  ++++++++.    + ++|+|+
T Consensus        79 ~~~rV~IIGa-G~~G~~la~~~~~~~g~~iVg~~D~dp~--k~g~~i-----~gv~V~~~~dl~ell~----~-~ID~Vi  145 (211)
T 2dt5_A           79 RKWGLCIVGM-GRLGSALADYPGFGESFELRGFFDVDPE--KVGRPV-----RGGVIEHVDLLPQRVP----G-RIEIAL  145 (211)
T ss_dssp             SCEEEEEECC-SHHHHHHHHCSCCCSSEEEEEEEESCTT--TTTCEE-----TTEEEEEGGGHHHHST----T-TCCEEE
T ss_pred             CCCEEEEECc-cHHHHHHHHhHhhcCCcEEEEEEeCCHH--HHhhhh-----cCCeeecHHhHHHHHH----c-CCCEEE
Confidence            3489999995 9999999996322238999999995431  112211     23444  578888876    3 899999


Q ss_pred             EccCchhHHHHHHHHHHcCCcEE-EeCC
Q 031216          112 DFTDASTVYDNVKQATAFGMRSV-VYVP  138 (163)
Q Consensus       112 DfT~p~~~~~~~~~al~~G~~vV-igtt  138 (163)
                      .+++...+.+.+..++++|++.| ..+|
T Consensus       146 IA~Ps~~~~ei~~~l~~aGi~~Ilnf~P  173 (211)
T 2dt5_A          146 LTVPREAAQKAADLLVAAGIKGILNFAP  173 (211)
T ss_dssp             ECSCHHHHHHHHHHHHHHTCCEEEECSS
T ss_pred             EeCCchhHHHHHHHHHHcCCCEEEECCc
Confidence            66666666789999999999944 5566

>3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O

Probab=98.77  E-value=1.1e-08  Score=86.62  Aligned_cols=99  Identities=17%  Similarity=0.210  Sum_probs=68.8

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec-CCCCcchhhh------ccCCC--------C-------CCcceeC
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-HSVGEDIGMV------CDMEQ--------P-------LEIPVMS   92 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~-~~~g~~~~~l------~g~~~--------~-------~gi~v~~   92 (163)
                      |+||+|+|+ |++|+.++|.+.++|++||+++.|+ ... ...+.+      .|...        .       ..+.++.
T Consensus         3 ~ikVgI~G~-GrIGr~l~R~l~~~p~vevvaI~d~~~~~-~~~~~ll~yds~~g~~~~~~v~~~~~~~l~~~g~~i~v~~   80 (337)
T 3e5r_O            3 KIKIGINGF-GRIGRLVARVALQSEDVELVAVNDPFITT-DYMTYMFKYDTVHGQWKHSDIKIKDSKTLLLGEKPVTVFG   80 (337)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHTCSSEEEEEEECSSSCH-HHHHHHHHCCTTTCCCCSSCEEESSSSEEEETTEEEEEEC
T ss_pred             ceEEEEECc-CHHHHHHHHHHhCCCCeEEEEEECCCCCH-HHHHHhhcccccCCCCCCCcEEeecCCeeEECCeEEEEEe
Confidence            479999996 9999999999999999999999984 111 000111      11000        0       0123343


Q ss_pred             --CHHHHH-hcccccCCccEEEEccCchhHHHHHHHHHHcCCc-EEEeCCC
Q 031216           93 --DLTMVL-GSISQSKARAVVIDFTDASTVYDNVKQATAFGMR-SVVYVPH  139 (163)
Q Consensus        93 --~l~ell-~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~-vVigttg  139 (163)
                        |++++. ..    .++|+|+++|....+.+.+..++++|++ +|+-.|+
T Consensus        81 ~~dp~~l~w~~----~~vDvV~eaTg~~~~~e~a~~~l~aGak~VVIs~pa  127 (337)
T 3e5r_O           81 IRNPDEIPWAE----AGAEYVVESTGVFTDKEKAAAHLKGGAKKVVISAPS  127 (337)
T ss_dssp             CSCGGGCCHHH----HTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSCC
T ss_pred             cCChHHccccc----cCCCEEEECCCchhhHHHHHHHHHcCCCEEEEecCC
Confidence              676652 11    3899999999888889999999999984 7776664

>1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A

Probab=98.77  E-value=1.9e-08  Score=85.77  Aligned_cols=97  Identities=12%  Similarity=0.106  Sum_probs=69.1

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCC---CCcceeCCHHHHHhcccccCCccEEE
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQP---LEIPVMSDLTMVLGSISQSKARAVVI  111 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~---~gi~v~~~l~ell~~~~~~~~~DVVI  111 (163)
                      ++||+|+||+|++|+.+++.+.++|+++++++.++...|....+..+....   .++.+ .+ ++.+      .++|+|+
T Consensus        16 ~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~~~~~g~~~~~~~~~~~~~v~~dl~~-~~-~~~~------~~vDvVf   87 (359)
T 1xyg_A           16 DIRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADRKAGQSMESVFPHLRAQKLPTLVS-VK-DADF------STVDAVF   87 (359)
T ss_dssp             CEEEEEECCSSHHHHHHHHHHHTCSSEEEEEEBCSTTTTSCHHHHCGGGTTSCCCCCBC-GG-GCCG------GGCSEEE
T ss_pred             CcEEEEECcCCHHHHHHHHHHHcCCCcEEEEEeCchhcCCCHHHhCchhcCccccccee-cc-hhHh------cCCCEEE
Confidence            489999999999999999999999999999998876666655544331100   11222 22 3333      2799999


Q ss_pred             EccCchhHHHHHHHHHHcCCcEEEeCCCC
Q 031216          112 DFTDASTVYDNVKQATAFGMRSVVYVPHI  140 (163)
Q Consensus       112 DfT~p~~~~~~~~~al~~G~~vVigttg~  140 (163)
                      .++....+.+.+..+ ++|+++|.-+..+
T Consensus        88 ~atp~~~s~~~a~~~-~aG~~VId~sa~~  115 (359)
T 1xyg_A           88 CCLPHGTTQEIIKEL-PTALKIVDLSADF  115 (359)
T ss_dssp             ECCCTTTHHHHHHTS-CTTCEEEECSSTT
T ss_pred             EcCCchhHHHHHHHH-hCCCEEEECCccc
Confidence            666556678999999 9999887654433

>4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A*

Probab=98.74  E-value=2.7e-08  Score=84.98  Aligned_cols=97  Identities=16%  Similarity=0.178  Sum_probs=70.7

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCC----C---CCccee-CCHHHHHhcccccC
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQ----P---LEIPVM-SDLTMVLGSISQSK  105 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~----~---~gi~v~-~~l~ell~~~~~~~  105 (163)
                      +++||+|+||+|+.|+++++.+.++|.++|+.+.+++..|++..+......    +   .+..+. .+.++ +      .
T Consensus         6 ~~~kVaIvGATGyvG~eLlrlL~~hP~~el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~~~v~~~~~~~-~------~   78 (359)
T 4dpk_A            6 RTLKAAILGATGLVGIEYVRMLSNHPYIKPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIADMEIKPTDPKL-M------D   78 (359)
T ss_dssp             CCEEEEETTTTSTTHHHHHHHHTTCSSEEEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHTCBCEECCGGG-C------T
T ss_pred             CCCeEEEECCCCHHHHHHHHHHHhCCCceEEEEECchhcCCChhHhcccccccccccccccceEEeCCHHH-h------c
Confidence            468999999999999999999999999999999887778888776532100    0   012222 12222 2      3


Q ss_pred             CccEEEEccCchhHHHHHHHHHHcCCcEEEeC
Q 031216          106 ARAVVIDFTDASTVYDNVKQATAFGMRSVVYV  137 (163)
Q Consensus       106 ~~DVVIDfT~p~~~~~~~~~al~~G~~vVigt  137 (163)
                      ++|+|+.++......+++..+++.|+.+|.=+
T Consensus        79 ~vDvvf~a~p~~~s~~~a~~~~~~G~~vIDlS  110 (359)
T 4dpk_A           79 DVDIIFSPLPQGAAGPVEEQFAKEGFPVISNS  110 (359)
T ss_dssp             TCCEEEECCCTTTHHHHHHHHHHTTCEEEECS
T ss_pred             CCCEEEECCChHHHHHHHHHHHHCCCEEEEcC
Confidence            89999955545555789999999999988533

>4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A*

Probab=98.74  E-value=2.7e-08  Score=84.98  Aligned_cols=97  Identities=16%  Similarity=0.178  Sum_probs=70.7

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCC----C---CCccee-CCHHHHHhcccccC
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQ----P---LEIPVM-SDLTMVLGSISQSK  105 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~----~---~gi~v~-~~l~ell~~~~~~~  105 (163)
                      +++||+|+||+|+.|+++++.+.++|.++|+.+.+++..|++..+......    +   .+..+. .+.++ +      .
T Consensus         6 ~~~kVaIvGATGyvG~eLlrlL~~hP~~el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~~~v~~~~~~~-~------~   78 (359)
T 4dpl_A            6 RTLKAAILGATGLVGIEYVRMLSNHPYIKPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIADMEIKPTDPKL-M------D   78 (359)
T ss_dssp             CCEEEEETTTTSTTHHHHHHHHTTCSSEEEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHTCBCEECCGGG-C------T
T ss_pred             CCCeEEEECCCCHHHHHHHHHHHhCCCceEEEEECchhcCCChhHhcccccccccccccccceEEeCCHHH-h------c
Confidence            468999999999999999999999999999999887778888776532100    0   012222 12222 2      3


Q ss_pred             CccEEEEccCchhHHHHHHHHHHcCCcEEEeC
Q 031216          106 ARAVVIDFTDASTVYDNVKQATAFGMRSVVYV  137 (163)
Q Consensus       106 ~~DVVIDfT~p~~~~~~~~~al~~G~~vVigt  137 (163)
                      ++|+|+.++......+++..+++.|+.+|.=+
T Consensus        79 ~vDvvf~a~p~~~s~~~a~~~~~~G~~vIDlS  110 (359)
T 4dpl_A           79 DVDIIFSPLPQGAAGPVEEQFAKEGFPVISNS  110 (359)
T ss_dssp             TCCEEEECCCTTTHHHHHHHHHHTTCEEEECS
T ss_pred             CCCEEEECCChHHHHHHHHHHHHCCCEEEEcC
Confidence            89999955545555789999999999988533

>1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=98.72  E-value=4e-08  Score=83.85  Aligned_cols=96  Identities=15%  Similarity=0.074  Sum_probs=70.8

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCccee-CCHHHHHhcccccCCccEEEE
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM-SDLTMVLGSISQSKARAVVID  112 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~-~~l~ell~~~~~~~~~DVVID  112 (163)
                      -|+||+|+||+|+.|+++++.+.++|.+||+.+.+++..|+.+.++.+.. ..+..+. .+.++++.      ++|+|+ 
T Consensus        12 ~~~~V~IvGAtG~vG~ellrlL~~hP~~el~~l~S~~~aG~~~~~~~p~~-~~~l~~~~~~~~~~~~------~~Dvvf-   83 (351)
T 1vkn_A           12 HMIRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPST-LENSILSEFDPEKVSK------NCDVLF-   83 (351)
T ss_dssp             CCEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGG-CCCCBCBCCCHHHHHH------HCSEEE-
T ss_pred             ceeEEEEECCCCHHHHHHHHHHHcCCCcEEEEEeCcccccCChHHhChhh-ccCceEEeCCHHHhhc------CCCEEE-
Confidence            58999999999999999999999999999999888777888888654321 1233332 24455433      799999 


Q ss_pred             ccCchhH-HHHHHHHHHcCCcEEEeCCC
Q 031216          113 FTDASTV-YDNVKQATAFGMRSVVYVPH  139 (163)
Q Consensus       113 fT~p~~~-~~~~~~al~~G~~vVigttg  139 (163)
                      |+.|... .+++..+  .|+.||--...
T Consensus        84 ~alp~~~s~~~~~~~--~g~~VIDlSsd  109 (351)
T 1vkn_A           84 TALPAGASYDLVREL--KGVKIIDLGAD  109 (351)
T ss_dssp             ECCSTTHHHHHHTTC--CSCEEEESSST
T ss_pred             ECCCcHHHHHHHHHh--CCCEEEECChh
Confidence            6667655 5677666  89987764443

>2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii}

Probab=98.71  E-value=1.7e-08  Score=85.68  Aligned_cols=96  Identities=20%  Similarity=0.226  Sum_probs=65.4

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhc--------cC---------CCCCCcceeCCHHHH
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC--------DM---------EQPLEIPVMSDLTMV   97 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~--------g~---------~~~~gi~v~~~l~el   97 (163)
                      |+||||+|+ |++|+.+++.+.++++++|+++.|... .. ...++        |.         ....++.+..+.+++
T Consensus         2 mikVgI~G~-G~IGr~v~r~l~~~~~~evvaV~d~~~-~~-~~~l~~~dg~s~~g~~~~~~~v~~~~~~~l~v~~~~~~~   78 (343)
T 2yyy_A            2 PAKVLINGY-GSIGKRVADAVSMQDDMEVIGVTKTKP-DF-EARLAVEKGYKLFVAIPDNERVKLFEDAGIPVEGTILDI   78 (343)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHHSSSEEEEEEEESSC-SH-HHHHHHHTTCCEEESSCCHHHHHHHHHTTCCCCCBGGGT
T ss_pred             ceEEEEECC-CHHHHHHHHHHHhCCCceEEEEecCCH-HH-HHHHHHhcCCccccccCCCceeecccCCeEEECCchHHh
Confidence            689999996 999999999999999999999998531 11 11000        00         001122333345555


Q ss_pred             HhcccccCCccEEEEccCchhHHHHHH-HHHHcCCcEEEeCCC
Q 031216           98 LGSISQSKARAVVIDFTDASTVYDNVK-QATAFGMRSVVYVPH  139 (163)
Q Consensus        98 l~~~~~~~~~DVVIDfT~p~~~~~~~~-~al~~G~~vVigttg  139 (163)
                      +.      ++|+|+++|......+++. .++++|++||+..+.
T Consensus        79 ~~------~vDiV~eatg~~~s~~~a~~~~l~aG~~VI~sap~  115 (343)
T 2yyy_A           79 IE------DADIVVDGAPKKIGKQNLENIYKPHKVKAILQGGE  115 (343)
T ss_dssp             GG------GCSEEEECCCTTHHHHHHHHTTTTTTCEEEECTTS
T ss_pred             cc------CCCEEEECCCccccHHHHHHHHHHCCCEEEECCCc
Confidence            43      7999997765555588885 999999998885543

>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens}

Probab=98.70  E-value=5.5e-08  Score=90.90  Aligned_cols=122  Identities=16%  Similarity=0.206  Sum_probs=93.7

Q ss_pred             CCCeeEEEEcCCCHHHHHHHHHHHh-----cCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCc
Q 031216           33 QSNIKVIINGAVKEIGRAAVIAVTK-----ARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKAR  107 (163)
Q Consensus        33 ~~~irV~VvGa~G~mG~~i~~~i~~-----~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~  107 (163)
                      .+..||.|.|++|+   .+.+++..     .++.++|+.+++...|.+...+.|.. ..|+|+|.+++++.+.   ..++
T Consensus       494 ~~~trviV~G~tg~---~~~~ml~~~~~~~~~~~~vVa~V~P~~~g~~~~~~~G~~-~~Gvp~y~sv~ea~~~---~p~~  566 (829)
T 3pff_A          494 SRHTKAIVWGMQTR---AVQGMLDFDYVCSRDEPSVAAMVYPFTGDHKQKFYWGHK-EILIPVFKNMADAMRK---HPEV  566 (829)
T ss_dssp             CTTCCEEEESCCHH---HHHHHHHHHHHTTCSSCSEEEEECTTSCSEEEEEEETTE-EEEEEEESSHHHHHHH---CTTC
T ss_pred             cCCCeEEEECCcHH---HHHHHHHhcccccCCCCcEEEEEcCCCCCccceEEecCC-cCCcccCCcHHHHhhc---cCCC
Confidence            34589999999877   44455443     37899999999866554444334442 5689999999998862   0158


Q ss_pred             cEEEEccCchhHHHHHHHHHH-cCCcEE-EeCCCCCHHHHHHHHHHhhhcCeEEcC
Q 031216          108 AVVIDFTDASTVYDNVKQATA-FGMRSV-VYVPHIQLETVSALSAFCDKASMVSTG  161 (163)
Q Consensus       108 DVVIDfT~p~~~~~~~~~al~-~G~~vV-igttg~~~e~~~~L~~~A~~~~Vv~tg  161 (163)
                      |++|.|.+|..+.+.+..|++ .|++.+ +=|.|+...+..+|.++|++.++..-|
T Consensus       567 DlaVI~vP~~~v~~av~ea~~~~Gvk~~Viis~Gf~e~~~~~l~~~A~~~g~rliG  622 (829)
T 3pff_A          567 DVLINFASLRSAYDSTMETMNYAQIRTIAIIAEGIPEALTRKLIKKADQKGVTIIG  622 (829)
T ss_dssp             CEEEECCCTTTHHHHHHHHTTSTTCCEEEECCSCCCHHHHHHHHHHHHHHTCEEEC
T ss_pred             cEEEEeCCHHHHHHHHHHHHhhCCCCEEEEeCCCCCHHHHHHHHHHHHHcCCEEEc
Confidence            999999999999999999999 998855 446699988888999999998876544

>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A*

Probab=98.69  E-value=5.2e-08  Score=77.84  Aligned_cols=90  Identities=23%  Similarity=0.325  Sum_probs=60.3

Q ss_pred             CeeEEEEcCCCHHHHHHHHH-HHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcce--eCCHHHHHhcccccCCccEEE
Q 031216           35 NIKVIINGAVKEIGRAAVIA-VTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV--MSDLTMVLGSISQSKARAVVI  111 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~-i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v--~~~l~ell~~~~~~~~~DVVI  111 (163)
                      ..||+|+|+ |++|+.+++. ....++++++|++|.+..  ..+...     .++++  ++++++++.     .. |+++
T Consensus        85 ~~rV~IIGA-G~~G~~La~~~~~~~~g~~iVg~~D~dp~--k~g~~i-----~gv~V~~~~dl~eli~-----~~-D~Vi  150 (215)
T 2vt3_A           85 MTDVILIGV-GNLGTAFLHYNFTKNNNTKISMAFDINES--KIGTEV-----GGVPVYNLDDLEQHVK-----DE-SVAI  150 (215)
T ss_dssp             --CEEEECC-SHHHHHHHHCC------CCEEEEEESCTT--TTTCEE-----TTEEEEEGGGHHHHCS-----SC-CEEE
T ss_pred             CCEEEEEcc-CHHHHHHHHHHhcccCCcEEEEEEeCCHH--HHHhHh-----cCCeeechhhHHHHHH-----hC-CEEE
Confidence            478999995 9999999995 345779999999996431  122221     23343  578888886     24 9988


Q ss_pred             EccCchhHHHHHHHHHHcCCc-EEEeCC
Q 031216          112 DFTDASTVYDNVKQATAFGMR-SVVYVP  138 (163)
Q Consensus       112 DfT~p~~~~~~~~~al~~G~~-vVigtt  138 (163)
                      .+++...+.+.+..+++.|++ ++..+|
T Consensus       151 IAvPs~~~~ei~~~l~~aGi~~Ilnf~P  178 (215)
T 2vt3_A          151 LTVPAVAAQSITDRLVALGIKGILNFTP  178 (215)
T ss_dssp             ECSCHHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             EecCchhHHHHHHHHHHcCCCEEEEcCc
Confidence            555555667899999999999 666666

>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A

Probab=98.69  E-value=5.3e-08  Score=72.54  Aligned_cols=107  Identities=13%  Similarity=0.108  Sum_probs=79.9

Q ss_pred             CeeEEEEcCC---CHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEE
Q 031216           35 NIKVIINGAV---KEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI  111 (163)
Q Consensus        35 ~irV~VvGa~---G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVI  111 (163)
                      +.+|+|+|++   |+||+.+++.+. ..++++ .-+++...+.   +      -.|+++|.+++++-      ..+|+++
T Consensus        13 p~~vaVvGas~~~g~~G~~~~~~l~-~~G~~v-~~vnp~~~~~---~------i~G~~~~~sl~el~------~~vDlav   75 (140)
T 1iuk_A           13 AKTIAVLGAHKDPSRPAHYVPRYLR-EQGYRV-LPVNPRFQGE---E------LFGEEAVASLLDLK------EPVDILD   75 (140)
T ss_dssp             CCEEEEETCCSSTTSHHHHHHHHHH-HTTCEE-EEECGGGTTS---E------ETTEECBSSGGGCC------SCCSEEE
T ss_pred             CCEEEEECCCCCCCChHHHHHHHHH-HCCCEE-EEeCCCcccC---c------CCCEEecCCHHHCC------CCCCEEE
Confidence            4679999987   899999999987 567873 2334321121   2      13788999999875      3899999


Q ss_pred             EccCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeEEcC
Q 031216          112 DFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVSTG  161 (163)
Q Consensus       112 DfT~p~~~~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv~tg  161 (163)
                      .+..++.+.+.++.+.+.|+..++-.+++..   +++.++|++.|+-+-|
T Consensus        76 i~vp~~~~~~v~~~~~~~gi~~i~~~~g~~~---~~~~~~a~~~Gir~vg  122 (140)
T 1iuk_A           76 VFRPPSALMDHLPEVLALRPGLVWLQSGIRH---PEFEKALKEAGIPVVA  122 (140)
T ss_dssp             ECSCHHHHTTTHHHHHHHCCSCEEECTTCCC---HHHHHHHHHTTCCEEE
T ss_pred             EEeCHHHHHHHHHHHHHcCCCEEEEcCCcCH---HHHHHHHHHcCCEEEc
Confidence            8888888889999999999887776777652   6688888888765544

>1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1

Probab=98.68  E-value=2.9e-08  Score=83.93  Aligned_cols=99  Identities=17%  Similarity=0.194  Sum_probs=67.2

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec-CCCCcchhhh------ccCC-------------CCCCccee--C
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-HSVGEDIGMV------CDME-------------QPLEIPVM--S   92 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~-~~~g~~~~~l------~g~~-------------~~~gi~v~--~   92 (163)
                      |+||||+|+ |++|+.++|.+.++|+++|+++.|+ ...+ ....+      .|..             ....+.++  .
T Consensus         3 ~ikVgI~G~-G~iGr~~~R~l~~~~~vevvaI~d~~~~~~-~~a~l~~~ds~~g~~~~~~~~~~~~l~v~g~~i~v~~~~   80 (335)
T 1u8f_O            3 KVKVGVNGF-GRIGRLVTRAAFNSGKVDIVAINDPFIDLN-YMVYMFQYDSTHGKFHGTVKAENGKLVINGNPITIFQER   80 (335)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHCSSEEEEEECSSSCHH-HHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCS
T ss_pred             ceEEEEEcc-CHHHHHHHHHHHcCCCcEEEEecCCCCCHH-HHHHHhhcccccCCCCCceEEcCCeEEECCeEEEEEecC
Confidence            589999995 9999999999999999999999984 2111 10000      0000             00122334  3


Q ss_pred             CHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcC-CcEEEeCC
Q 031216           93 DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFG-MRSVVYVP  138 (163)
Q Consensus        93 ~l~ell~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G-~~vVigtt  138 (163)
                      |++++...   +.++|+|+++|....+.+.+..++++| +.|++..+
T Consensus        81 d~~~l~~~---~~~vDvV~eatg~~~~~e~a~~~l~aGak~V~iSap  124 (335)
T 1u8f_O           81 DPSKIKWG---DAGAEYVVESTGVFTTMEKAGAHLQGGAKRVIISAP  124 (335)
T ss_dssp             SGGGCCTT---TTTCCEEEECSSSCCSHHHHGGGGGGTCSEEEESSC
T ss_pred             CHHHCccc---cCCCCEEEECCCchhhHHHHHHHHhCCCeEEEeccC
Confidence            66665210   148999998887778899999999999 66666554

>2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C*

Probab=98.66  E-value=6.7e-08  Score=81.59  Aligned_cols=93  Identities=12%  Similarity=0.035  Sum_probs=67.2

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhc--CCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEE
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI  111 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~--~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVI  111 (163)
                      +|+||+|+||+|++|+.+++.+.++  |+++++++.+++..|+... +.    ...+.+ .+++....     .++|+|+
T Consensus         2 ~~~kV~I~GAtG~iG~~llr~L~~~~~p~~elv~i~s~~~~G~~~~-~~----~~~i~~-~~~~~~~~-----~~vDvVf   70 (336)
T 2r00_A            2 QQFNVAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEGKTYR-FN----GKTVRV-QNVEEFDW-----SQVHIAL   70 (336)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTTTCEEE-ET----TEEEEE-EEGGGCCG-----GGCSEEE
T ss_pred             CccEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEEECCCCCCCcee-ec----CceeEE-ecCChHHh-----cCCCEEE
Confidence            4799999999999999999999988  8999999987655555432 11    112333 23332111     3799999


Q ss_pred             EccCchhHHHHHHHHHHcCCcEEEeC
Q 031216          112 DFTDASTVYDNVKQATAFGMRSVVYV  137 (163)
Q Consensus       112 DfT~p~~~~~~~~~al~~G~~vVigt  137 (163)
                      +++......+++..+++.|+.+|.-+
T Consensus        71 ~a~g~~~s~~~a~~~~~~G~~vId~s   96 (336)
T 2r00_A           71 FSAGGELSAKWAPIAAEAGVVVIDNT   96 (336)
T ss_dssp             ECSCHHHHHHHHHHHHHTTCEEEECS
T ss_pred             ECCCchHHHHHHHHHHHcCCEEEEcC
Confidence            66655667899999999999877644

>3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans}

Probab=98.65  E-value=8.4e-08  Score=82.59  Aligned_cols=97  Identities=20%  Similarity=0.145  Sum_probs=68.9

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe-cCCCCcchhhhccCCCC-------CCcceeCCHHH--HHhcccc
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID-SHSVGEDIGMVCDMEQP-------LEIPVMSDLTM--VLGSISQ  103 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid-~~~~g~~~~~l~g~~~~-------~gi~v~~~l~e--ll~~~~~  103 (163)
                      +|+||+|+||+|..|+++++.+.++|.++|+.+.. ++..|+.+.+.......       .+..+ .++++  .+     
T Consensus        18 ~~~kVaIvGAtG~vG~ell~lL~~hp~~el~~l~aS~~saGk~~~~~~~~~~~~~~p~~~~~~~v-~~~~~~~~~-----   91 (381)
T 3hsk_A           18 SVKKAGVLGATGSVGQRFILLLSKHPEFEIHALGASSRSAGKKYKDAASWKQTETLPETEQDIVV-QECKPEGNF-----   91 (381)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHHHHCCCCCSSCCCHHHHTCBC-EESSSCTTG-----
T ss_pred             CccEEEEECCCChHHHHHHHHHHcCCCceEEEeeccccccCCCHHHhcccccccccccccccceE-EeCchhhhc-----
Confidence            46899999999999999999999999999998864 55788887655321100       01122 22221  23     


Q ss_pred             cCCccEEEEccCchh-HHHHHHHHHHcCCcEEEeCC
Q 031216          104 SKARAVVIDFTDAST-VYDNVKQATAFGMRSVVYVP  138 (163)
Q Consensus       104 ~~~~DVVIDfT~p~~-~~~~~~~al~~G~~vVigtt  138 (163)
                       .++|+|+ ++.|.. ..+++..+++.|+.||--+.
T Consensus        92 -~~~Dvvf-~alp~~~s~~~~~~~~~~G~~VIDlSa  125 (381)
T 3hsk_A           92 -LECDVVF-SGLDADVAGDIEKSFVEAGLAVVSNAK  125 (381)
T ss_dssp             -GGCSEEE-ECCCHHHHHHHHHHHHHTTCEEEECCS
T ss_pred             -ccCCEEE-ECCChhHHHHHHHHHHhCCCEEEEcCC
Confidence             3799999 555555 57899999999999886444

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=98.62  E-value=6.4e-07  Score=62.11  Aligned_cols=106  Identities=15%  Similarity=0.166  Sum_probs=69.7

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcce----e---CCHHHHHhcccccCC
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV----M---SDLTMVLGSISQSKA  106 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v----~---~~l~ell~~~~~~~~  106 (163)
                      .++||+|+|+ |.||+.+++.+.+....+++ ++++..  .....+.    ..++..    .   +++++++      .+
T Consensus         4 ~~~~v~I~G~-G~iG~~~~~~l~~~g~~~v~-~~~r~~--~~~~~~~----~~~~~~~~~d~~~~~~~~~~~------~~   69 (118)
T 3ic5_A            4 MRWNICVVGA-GKIGQMIAALLKTSSNYSVT-VADHDL--AALAVLN----RMGVATKQVDAKDEAGLAKAL------GG   69 (118)
T ss_dssp             TCEEEEEECC-SHHHHHHHHHHHHCSSEEEE-EEESCH--HHHHHHH----TTTCEEEECCTTCHHHHHHHT------TT
T ss_pred             CcCeEEEECC-CHHHHHHHHHHHhCCCceEE-EEeCCH--HHHHHHH----hCCCcEEEecCCCHHHHHHHH------cC
Confidence            4679999997 99999999999865437766 456432  1122221    112111    1   2334444      38


Q ss_pred             ccEEEEccCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhc
Q 031216          107 RAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKA  155 (163)
Q Consensus       107 ~DVVIDfT~p~~~~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~~  155 (163)
                      +|+||+++.+......+..+.+.|++.+.-+  -+.+..+++.+++++.
T Consensus        70 ~d~vi~~~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~~~~~~~~a  116 (118)
T 3ic5_A           70 FDAVISAAPFFLTPIIAKAAKAAGAHYFDLT--EDVAATNAVRALVEDS  116 (118)
T ss_dssp             CSEEEECSCGGGHHHHHHHHHHTTCEEECCC--SCHHHHHHHHHHHHCC
T ss_pred             CCEEEECCCchhhHHHHHHHHHhCCCEEEec--CcHHHHHHHHHHHHhh
Confidence            9999998877777889999999999987633  2344566677766653

>2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A

Probab=98.58  E-value=2.2e-07  Score=79.05  Aligned_cols=98  Identities=14%  Similarity=0.060  Sum_probs=67.6

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcC-----CcEEEEEEecCCCCcchhhhccCCCC-CCcceeC-CHHHHHhcccccCCc
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKAR-----GMEVAGAIDSHSVGEDIGMVCDMEQP-LEIPVMS-DLTMVLGSISQSKAR  107 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~-----~~eLvgvid~~~~g~~~~~l~g~~~~-~gi~v~~-~l~ell~~~~~~~~~  107 (163)
                      |+||+|+||+|++|+.+++.+.+++     .++++.+.+++..|+...+..+.... ..+.+.+ +. +.+      .++
T Consensus         9 m~kVaIvGATG~vG~~llr~L~~~~~~~~~~~ei~~l~s~~~agk~~~~~~~~l~~~~~~~~~~~~~-~~~------~~~   81 (352)
T 2nqt_A            9 ATKVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAATSAGSTLGEHHPHLTPLAHRVVEPTEA-AVL------GGH   81 (352)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCHHHHTTSEEEEEEEESSCTTSBGGGTCTTCGGGTTCBCEECCH-HHH------TTC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHcCCCCCCccEEEEEEECCCcCCCchhhhcccccccceeeeccCCH-HHh------cCC
Confidence            6899999999999999999999999     89999988766566655543221000 1222221 32 234      389


Q ss_pred             cEEEEccCchhHHHHHHHHHHcCCcEEEeCCCC
Q 031216          108 AVVIDFTDASTVYDNVKQATAFGMRSVVYVPHI  140 (163)
Q Consensus       108 DVVIDfT~p~~~~~~~~~al~~G~~vVigttg~  140 (163)
                      |+|+.++......+.+..+ +.|+.+|.-+..+
T Consensus        82 DvVf~alg~~~s~~~~~~~-~~G~~vIDlSa~~  113 (352)
T 2nqt_A           82 DAVFLALPHGHSAVLAQQL-SPETLIIDCGADF  113 (352)
T ss_dssp             SEEEECCTTSCCHHHHHHS-CTTSEEEECSSTT
T ss_pred             CEEEECCCCcchHHHHHHH-hCCCEEEEECCCc
Confidence            9999555445567888888 9999887655443

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=98.54  E-value=2.1e-07  Score=74.25  Aligned_cols=99  Identities=16%  Similarity=0.185  Sum_probs=65.7

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEc
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDf  113 (163)
                      +|+||+|+| +|+||+.+++.+.+. +.+ +.++|++.  .....+..   ..++.+++++++++.      ++|+||.+
T Consensus         2 ~~m~i~iiG-~G~mG~~~a~~l~~~-g~~-v~~~~~~~--~~~~~~~~---~~g~~~~~~~~~~~~------~~D~Vi~~   67 (259)
T 2ahr_A            2 NAMKIGIIG-VGKMASAIIKGLKQT-PHE-LIISGSSL--ERSKEIAE---QLALPYAMSHQDLID------QVDLVILG   67 (259)
T ss_dssp             -CCEEEEEC-CSHHHHHHHHHHTTS-SCE-EEEECSSH--HHHHHHHH---HHTCCBCSSHHHHHH------TCSEEEEC
T ss_pred             CccEEEEEC-CCHHHHHHHHHHHhC-CCe-EEEECCCH--HHHHHHHH---HcCCEeeCCHHHHHh------cCCEEEEE
Confidence            568999999 699999999998754 454 56777642  12222221   235666789999885      89999978


Q ss_pred             cCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHH
Q 031216          114 TDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSAL  148 (163)
Q Consensus       114 T~p~~~~~~~~~al~~G~~vVigtt-g~~~e~~~~L  148 (163)
                      +.|..+.+.+.. ++.|+ +|+.++ +.+.++.+++
T Consensus        68 v~~~~~~~v~~~-l~~~~-~vv~~~~~~~~~~l~~~  101 (259)
T 2ahr_A           68 IKPQLFETVLKP-LHFKQ-PIISMAAGISLQRLATF  101 (259)
T ss_dssp             SCGGGHHHHHTT-SCCCS-CEEECCTTCCHHHHHHH
T ss_pred             eCcHhHHHHHHH-hccCC-EEEEeCCCCCHHHHHHh
Confidence            777666665543 34676 555564 7877654443

>1rm4_O Glyceraldehyde 3-phosphate dehydrogenase A; rossmann fold, GAPDH-NADP complex, oxidoreductase; HET: NDP; 2.00A {Spinacia oleracea} SCOP: c.2.1.3 d.81.1.1 PDB: 1nbo_O* 2hki_A 2pkq_P* 1rm5_O* 1rm3_O* 2pkr_O* 1jn0_O* 3qv1_A* 3k2b_A* 3rvd_A* 2pkq_O*

Probab=98.52  E-value=2.4e-07  Score=78.57  Aligned_cols=98  Identities=21%  Similarity=0.171  Sum_probs=66.4

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhc--CCcEEEEEEec-------------CCCCcchhhhc---c----CCCCCCccee-
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDS-------------HSVGEDIGMVC---D----MEQPLEIPVM-   91 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~--~~~eLvgvid~-------------~~~g~~~~~l~---g----~~~~~gi~v~-   91 (163)
                      |+||+|+|+ |++|+.++|.+.++  |++||+++-|.             +..|+-.+++.   +    +. ...+.++ 
T Consensus         1 ~ikVgInG~-G~IGr~llR~l~~~~~p~~eivaInd~~~~~~~a~ll~sds~~G~~~~~v~~~~~~~l~v~-g~~i~v~~   78 (337)
T 1rm4_O            1 KLKVAINGF-GRIGRNFLRCWHGRKDSPLDVVVINDTGGVKQASHLLKYDSILGTFDADVKTAGDSAISVD-GKVIKVVS   78 (337)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHTCSSCSEEEEEEECTTCHHHHHHHHHCCTTTCSCSSCEEECTTSEEEET-TEEEEEEC
T ss_pred             CeEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEEEcCCCHHHHHHHhcccccCCCccceeEEecCCeEEEC-CeEEEEEe
Confidence            589999997 99999999999999  99999999852             12333222221   1    00 1123333 


Q ss_pred             -CCHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeC
Q 031216           92 -SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV  137 (163)
Q Consensus        92 -~~l~ell~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigt  137 (163)
                       .+++++-..   +..+|+|+++|......+.+...++.|..+|+=+
T Consensus        79 ~~dp~~i~w~---~~gvDiV~eatg~~~s~e~a~~~l~~Gak~V~iS  122 (337)
T 1rm4_O           79 DRNPVNLPWG---DMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVLIT  122 (337)
T ss_dssp             CSCGGGSCHH---HHTCCEEEECSSSCCBHHHHHHHHHTTCSEEEES
T ss_pred             cCChhhCccc---ccCCCEEEECCCchhhHHHHHHHHHcCCEEEEEC
Confidence             345443110   1279999988766777899999999998887644

>3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A

Probab=98.52  E-value=2.9e-07  Score=78.86  Aligned_cols=93  Identities=15%  Similarity=0.159  Sum_probs=67.7

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhc--CCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHH-HHHhcccccCCccEEE
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLT-MVLGSISQSKARAVVI  111 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~--~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~-ell~~~~~~~~~DVVI  111 (163)
                      ++||+|+||+|+.|+++++.+.++  |..+|..+..++..|+... +.+    .+..+ .+++ +.+      .++|+|+
T Consensus         2 ~~kVaIvGATG~vG~eLlrlL~~~~~p~~el~~~as~~saG~~~~-~~~----~~~~~-~~~~~~~~------~~~Dvvf   69 (366)
T 3pwk_A            2 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLK-FKD----QDITI-EETTETAF------EGVDIAL   69 (366)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCCCCEEEEEEEECTTTTTCEEE-ETT----EEEEE-EECCTTTT------TTCSEEE
T ss_pred             CcEEEEECCCChHHHHHHHHHhcCCCCcEEEEEEEccccCCCcce-ecC----CCceE-eeCCHHHh------cCCCEEE
Confidence            589999999999999999999987  8999998877766776554 211    12222 2222 223      3899999


Q ss_pred             EccCchhHHHHHHHHHHcCCcEEEeCCC
Q 031216          112 DFTDASTVYDNVKQATAFGMRSVVYVPH  139 (163)
Q Consensus       112 DfT~p~~~~~~~~~al~~G~~vVigttg  139 (163)
                      .++......+++..+++.|+.+|--+..
T Consensus        70 ~a~~~~~s~~~a~~~~~~G~~vIDlSa~   97 (366)
T 3pwk_A           70 FSAGSSTSAKYAPYAVKAGVVVVDNTSY   97 (366)
T ss_dssp             ECSCHHHHHHHHHHHHHTTCEEEECSST
T ss_pred             ECCChHhHHHHHHHHHHCCCEEEEcCCc
Confidence            6665555688999999999998865543

>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*

Probab=98.52  E-value=3.2e-07  Score=73.24  Aligned_cols=93  Identities=20%  Similarity=0.219  Sum_probs=66.5

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHH-HhcCCcEEEEEEecCCCCcchhh-hccCCCCCCccee--CCHHHHHhcccccCCccE
Q 031216           34 SNIKVIINGAVKEIGRAAVIAV-TKARGMEVAGAIDSHSVGEDIGM-VCDMEQPLEIPVM--SDLTMVLGSISQSKARAV  109 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i-~~~~~~eLvgvid~~~~g~~~~~-l~g~~~~~gi~v~--~~l~ell~~~~~~~~~DV  109 (163)
                      ++.||+|+|| |++|+.+++.+ ....+++++|++|.++.- ..+. .     -.|++|+  +++++++.+    .++|+
T Consensus        83 ~~~~V~IvGa-G~lG~aLa~~~~~~~~g~~iVg~~D~dp~~-kiG~~~-----i~GvpV~~~~dL~~~v~~----~~Id~  151 (212)
T 3keo_A           83 STTNVMLVGC-GNIGRALLHYRFHDRNKMQISMAFDLDSND-LVGKTT-----EDGIPVYGISTINDHLID----SDIET  151 (212)
T ss_dssp             SCEEEEEECC-SHHHHHHTTCCCCTTSSEEEEEEEECTTST-TTTCBC-----TTCCBEEEGGGHHHHC-C----CSCCE
T ss_pred             CCCEEEEECc-CHHHHHHHHhhhcccCCeEEEEEEeCCchh-ccCcee-----ECCeEEeCHHHHHHHHHH----cCCCE
Confidence            4579999995 99999999874 245799999999954310 1121 1     1356665  677777763    78999


Q ss_pred             EEEccCchhHHHHHHHHHHcCCcEEEeC
Q 031216          110 VIDFTDASTVYDNVKQATAFGMRSVVYV  137 (163)
Q Consensus       110 VIDfT~p~~~~~~~~~al~~G~~vVigt  137 (163)
                      +|.+++.....+.+..+.+.|++-|.=-
T Consensus       152 vIIAvPs~~aq~v~d~lv~~GIk~I~nF  179 (212)
T 3keo_A          152 AILTVPSTEAQEVADILVKAGIKGILSF  179 (212)
T ss_dssp             EEECSCGGGHHHHHHHHHHHTCCEEEEC
T ss_pred             EEEecCchhHHHHHHHHHHcCCCEEEEc
Confidence            9966655555788899999999988533

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=98.51  E-value=1.4e-07  Score=75.56  Aligned_cols=97  Identities=12%  Similarity=0.119  Sum_probs=67.6

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT  114 (163)
                      ++||+|+| +|+||+.+++.+.+. +.+++.++|++.  .....+..   ..++.+++++++++.      ++|+||.++
T Consensus        10 ~m~i~iiG-~G~mG~~~a~~l~~~-g~~~v~~~~~~~--~~~~~~~~---~~g~~~~~~~~~~~~------~~Dvvi~av   76 (266)
T 3d1l_A           10 DTPIVLIG-AGNLATNLAKALYRK-GFRIVQVYSRTE--ESARELAQ---KVEAEYTTDLAEVNP------YAKLYIVSL   76 (266)
T ss_dssp             GCCEEEEC-CSHHHHHHHHHHHHH-TCCEEEEECSSH--HHHHHHHH---HTTCEEESCGGGSCS------CCSEEEECC
T ss_pred             CCeEEEEc-CCHHHHHHHHHHHHC-CCeEEEEEeCCH--HHHHHHHH---HcCCceeCCHHHHhc------CCCEEEEec
Confidence            47999999 599999999998754 788788888642  12222221   236667888888764      899999888


Q ss_pred             CchhHHHHHHHHHH---cCCcEEEeCCCCCHHH
Q 031216          115 DASTVYDNVKQATA---FGMRSVVYVPHIQLET  144 (163)
Q Consensus       115 ~p~~~~~~~~~al~---~G~~vVigttg~~~e~  144 (163)
                      .+..+.+.+....+   .|..+|.-+++.+.+.
T Consensus        77 ~~~~~~~v~~~l~~~~~~~~ivv~~s~~~~~~~  109 (266)
T 3d1l_A           77 KDSAFAELLQGIVEGKREEALMVHTAGSIPMNV  109 (266)
T ss_dssp             CHHHHHHHHHHHHTTCCTTCEEEECCTTSCGGG
T ss_pred             CHHHHHHHHHHHHhhcCCCcEEEECCCCCchHH
Confidence            77766555554443   5666777666777554

>1gad_O D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehyde(D)-NAD+(A)); HET: NAD; 1.80A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1dc4_A* 1dc3_A 1dc6_A* 1dc5_A* 1s7c_A* 1gae_O* 2vyn_A* 2vyv_A*

Probab=98.49  E-value=2.9e-07  Score=77.82  Aligned_cols=100  Identities=22%  Similarity=0.176  Sum_probs=65.7

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCc-----chhhhccCC-------------CCCCcceeC--CH
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGE-----DIGMVCDME-------------QPLEIPVMS--DL   94 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~-----~~~~l~g~~-------------~~~gi~v~~--~l   94 (163)
                      |+||||+| .|++|++++|.+.++|++||+++.|....+.     +.....+..             ....+.++.  |+
T Consensus         1 ~ikVgI~G-~G~iG~~l~R~l~~~~~veiv~i~~~~~~~~~a~l~~~ds~~g~~~~~v~~~~~~l~v~g~~i~v~~~~dp   79 (330)
T 1gad_O            1 TIKVGING-FGRIGRIVFRAAQKRSDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDP   79 (330)
T ss_dssp             CEEEEEEC-CSHHHHHHHHHHHTCSSEEEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSG
T ss_pred             CeEEEEEC-cCHHHHHHHHHHHcCCCeEEEEEcCCCChhHHhHhhcccccCCCCCCeEEEcCCEEEECCEEEEEEEcCCh
Confidence            58999999 5999999999999999999999988522111     000111100             000122342  45


Q ss_pred             HHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeCC
Q 031216           95 TMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP  138 (163)
Q Consensus        95 ~ell~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigtt  138 (163)
                      +++...   +..+|+|+++|......+.+...++.|..+|.=+.
T Consensus        80 ~~i~w~---~~~vDvVf~atg~~~s~e~a~~~l~~GakvVdlSa  120 (330)
T 1gad_O           80 ANLKWD---EVGVDVVAEATGLFLTDETARKHITAGAKKVVMTG  120 (330)
T ss_dssp             GGGCHH---HHTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESS
T ss_pred             hhCccc---cccCCEEEECCCccccHHHHHHHHHCCCEEEEECC
Confidence            543110   03799999877666778999999999998776443

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=98.48  E-value=3.6e-07  Score=78.48  Aligned_cols=119  Identities=9%  Similarity=0.119  Sum_probs=76.7

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCc-EEEEEEecCCC-CcchhhhccC------C-CCCCcceeCCHHHHHhcccccC
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSHSV-GEDIGMVCDM------E-QPLEIPVMSDLTMVLGSISQSK  105 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~-eLvgvid~~~~-g~~~~~l~g~------~-~~~gi~v~~~l~ell~~~~~~~  105 (163)
                      |+||+|+|+ |++|+.+++.+.+++++ ..+.+++++.. .+...+..+.      . ...++.-.+++++++..    .
T Consensus         1 M~kVlIiGa-GgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~----~   75 (405)
T 4ina_A            1 MAKVLQIGA-GGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVALINE----V   75 (405)
T ss_dssp             -CEEEEECC-SHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHH----H
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHh----h
Confidence            579999997 99999999999988876 44556775421 1111111110      0 00111112456677752    3


Q ss_pred             CccEEEEccCchhHHHHHHHHHHcCCcEEEeCCCC--------CHHHHHHHHHHhhhcCeEE
Q 031216          106 ARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHI--------QLETVSALSAFCDKASMVS  159 (163)
Q Consensus       106 ~~DVVIDfT~p~~~~~~~~~al~~G~~vVigttg~--------~~e~~~~L~~~A~~~~Vv~  159 (163)
                      ++|+||+++.|....+.+..|++.|++++- ++.+        ......++.+.|++.++..
T Consensus        76 ~~DvVin~ag~~~~~~v~~a~l~~g~~vvD-~a~~~~~~~~~~~~~~~~~l~~~a~~aG~~~  136 (405)
T 4ina_A           76 KPQIVLNIALPYQDLTIMEACLRTGVPYLD-TANYEHPDLAKFEYKEQWAFHDRYKEKGVMA  136 (405)
T ss_dssp             CCSEEEECSCGGGHHHHHHHHHHHTCCEEE-SSCCBCTTCSCBCSHHHHTTHHHHHHHTCEE
T ss_pred             CCCEEEECCCcccChHHHHHHHHhCCCEEE-ecCCCCcccchhhhHHHHHHHHHHHHhCCEE
Confidence            599999999888888999999999999885 3322        1233357888888877653

>3uw3_A Aspartate-semialdehyde dehydrogenase; structural genomics, seattle structural genomics center for infectious disease (ssgcid); 1.55A {Burkholderia thailandensis}

Probab=98.47  E-value=1.3e-06  Score=75.15  Aligned_cols=93  Identities=14%  Similarity=0.075  Sum_probs=65.7

Q ss_pred             CCeeEEEEcCCCHHHHHHHH-HHHhcC--CcEEEEEEecCCCCcchhhhccCCCCCCccee--CCHHHHHhcccccCCcc
Q 031216           34 SNIKVIINGAVKEIGRAAVI-AVTKAR--GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKARA  108 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~-~i~~~~--~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~--~~l~ell~~~~~~~~~D  108 (163)
                      +++||+|+||+|..|+++++ .+.++|  ..+++.+..+ ..|+...++-+.    ...+.  .+.++ +.      ++|
T Consensus         3 ~~~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss~-~aG~~~~~~~~~----~~~v~~~~~~~~-~~------~vD   70 (377)
T 3uw3_A            3 GSMNVGLVGWRGMVGSVLMQRMQEEGDFDLIEPVFFSTS-NAGGKAPSFAKN----ETTLKDATSIDD-LK------KCD   70 (377)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESS-CTTSBCCTTCCS----CCBCEETTCHHH-HH------TCS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhhCCCCceEEEEEech-hcCCCHHHcCCC----ceEEEeCCChhH-hc------CCC
Confidence            45899999999999999999 888888  7899877665 677765554321    22222  23444 43      899


Q ss_pred             EEEEccCchhHHHHHHHHHHcCC-cEEEeCC
Q 031216          109 VVIDFTDASTVYDNVKQATAFGM-RSVVYVP  138 (163)
Q Consensus       109 VVIDfT~p~~~~~~~~~al~~G~-~vVigtt  138 (163)
                      +|+.++......+.+..+++.|+ .+||=.+
T Consensus        71 vvf~a~~~~~s~~~~~~~~~~G~k~~VID~s  101 (377)
T 3uw3_A           71 VIITCQGGDYTNDVFPKLRAAGWNGYWIDAA  101 (377)
T ss_dssp             EEEECSCHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred             EEEECCChHHHHHHHHHHHHCCCCEEEEeCC
Confidence            99944444455789999999997 3555444

>3pzr_A Aspartate-semialdehyde dehydrogenase; NADP, oxidoreductase-oxidoreductase inhibitor complex; HET: NAP; 1.75A {Vibrio cholerae} PDB: 1mc4_A 1mb4_A* 3q0e_A

Probab=98.46  E-value=1.1e-06  Score=75.29  Aligned_cols=91  Identities=15%  Similarity=0.022  Sum_probs=64.3

Q ss_pred             eeEEEEcCCCHHHHHHHH-HHHhcC--CcEEEEEEecCCCCcchhhhccCCCCCCccee--CCHHHHHhcccccCCccEE
Q 031216           36 IKVIINGAVKEIGRAAVI-AVTKAR--GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAVV  110 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~-~i~~~~--~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~--~~l~ell~~~~~~~~~DVV  110 (163)
                      +||+|+||+|..|+++++ .+.++|  ..+++.+..++ .|+...++-+.    ...+.  .++++ +      .++|+|
T Consensus         1 ~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss~~-aG~~~~~~~~~----~~~~~~~~~~~~-~------~~~Dvv   68 (370)
T 3pzr_A            1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQ-IGVPAPNFGKD----AGMLHDAFDIES-L------KQLDAV   68 (370)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSS-TTSBCCCSSSC----CCBCEETTCHHH-H------TTCSEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCCceEEEEEeccc-cCcCHHHhCCC----ceEEEecCChhH-h------ccCCEE
Confidence            689999999999999999 899888  78998876654 77766554321    22322  23444 3      389999


Q ss_pred             EEccCchhHHHHHHHHHHcCC-cEEEeCC
Q 031216          111 IDFTDASTVYDNVKQATAFGM-RSVVYVP  138 (163)
Q Consensus       111 IDfT~p~~~~~~~~~al~~G~-~vVigtt  138 (163)
                      +.++......+.+..+++.|. .+||=.+
T Consensus        69 f~a~~~~~s~~~~~~~~~~G~k~~VID~s   97 (370)
T 3pzr_A           69 ITCQGGSYTEKVYPALRQAGWKGYWIDAA   97 (370)
T ss_dssp             EECSCHHHHHHHHHHHHHTTCCCEEEECS
T ss_pred             EECCChHHHHHHHHHHHHCCCCEEEEeCC
Confidence            955444445789999999997 3555444

>2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1

Probab=98.46  E-value=3.9e-07  Score=77.01  Aligned_cols=91  Identities=16%  Similarity=0.171  Sum_probs=64.2

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHH--hcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHH-HHhcccccCCccEEE
Q 031216           35 NIKVIINGAVKEIGRAAVIAVT--KARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTM-VLGSISQSKARAVVI  111 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~--~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~e-ll~~~~~~~~~DVVI  111 (163)
                      ++||+|+||+|++|+.+++.+.  .+|.++|+++.+++..|+... +.+    ..+.+. +++. .+      ..+|+|+
T Consensus         6 ~~kV~IiGAtG~iG~~llr~L~~~~~~~~elv~i~s~~~~g~~~~-~~g----~~i~~~-~~~~~~~------~~~DvV~   73 (340)
T 2hjs_A            6 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMG-FAE----SSLRVG-DVDSFDF------SSVGLAF   73 (340)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEE-ETT----EEEECE-EGGGCCG------GGCSEEE
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCccc-cCC----cceEEe-cCCHHHh------cCCCEEE
Confidence            4799999999999999999998  779999999887655554322 111    122222 2221 13      3799999


Q ss_pred             EccCchhHHHHHHHHHHcCCcEEEeC
Q 031216          112 DFTDASTVYDNVKQATAFGMRSVVYV  137 (163)
Q Consensus       112 DfT~p~~~~~~~~~al~~G~~vVigt  137 (163)
                      .++......+++..+++.|+.+|.-+
T Consensus        74 ~a~g~~~s~~~a~~~~~aG~kvId~S   99 (340)
T 2hjs_A           74 FAAAAEVSRAHAERARAAGCSVIDLS   99 (340)
T ss_dssp             ECSCHHHHHHHHHHHHHTTCEEEETT
T ss_pred             EcCCcHHHHHHHHHHHHCCCEEEEeC
Confidence            66655566889999999999987533

>3cmc_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; microspectrophotometry, reaction intermediate, dehydrogenase phosphate binding site; HET: G3H NAD; 1.77A {Bacillus stearothermophilus} SCOP: c.2.1.3 d.81.1.1 PDB: 2gd1_O 1gd1_O* 1npt_O* 1nqa_O* 1nqo_O* 1nq5_O* 2dbv_O* 1dbv_O* 3dbv_O* 4dbv_O*

Probab=98.46  E-value=3.2e-07  Score=77.67  Aligned_cols=99  Identities=24%  Similarity=0.221  Sum_probs=65.2

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec-------------CCCCcchhhh------ccCCCCCCcceeC--C
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-------------HSVGEDIGMV------CDMEQPLEIPVMS--D   93 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~-------------~~~g~~~~~l------~g~~~~~gi~v~~--~   93 (163)
                      |+||+|+|+ |++|+.++|.+.++|+++++++.|.             +..|+-.+++      +-.. ...+.++.  +
T Consensus         1 mikVgI~G~-G~iGr~l~R~l~~~~~veivain~~~~~~~~~~ll~~ds~~G~~~~~v~~~~~~l~v~-g~~i~v~~~~d   78 (334)
T 3cmc_O            1 AVKVGINGF-GRIGRNVFRAALKNPDIEVVAVNDLTDANTLAHLLKYDSVHGRLDAEVSVNGNNLVVN-GKEIIVKAERD   78 (334)
T ss_dssp             CEEEEEESC-SHHHHHHHHHHTTCTTEEEEEEECSSCHHHHHHHHHEETTTEECSSCEEEETTEEEET-TEEEEEECCSS
T ss_pred             CeEEEEECC-CHHHHHHHHHHhCCCCeEEEEEeCCCCHHHHHHHhccCCcCCCcCceEEEccCcEEEC-CEEEEEEecCC
Confidence            689999997 9999999999999999999999874             1122110000      0000 11344442  5


Q ss_pred             HHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCc-EEEeCC
Q 031216           94 LTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMR-SVVYVP  138 (163)
Q Consensus        94 l~ell~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~-vVigtt  138 (163)
                      ++++...   +..+|+|+++|......+.+...++.|.. +||--+
T Consensus        79 p~~i~w~---~~~vDvV~~atg~~~s~e~a~~~l~~Gak~vVId~p  121 (334)
T 3cmc_O           79 PENLAWG---EIGVDIVVESTGRFTKREDAAKHLEAGAKKVIISAP  121 (334)
T ss_dssp             GGGCCTG---GGTCCEEEECSSSCCBHHHHTHHHHTTCSEEEESSC
T ss_pred             hhhcCcc---cCccCEEEECCCchhhHHHHHHHHHCCCCEEEEeCC
Confidence            5554210   13799999877666778999999999973 555333

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=98.45  E-value=1.5e-06  Score=72.04  Aligned_cols=110  Identities=11%  Similarity=0.113  Sum_probs=72.1

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEc
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDf  113 (163)
                      +++||+|+| +|.||+.+++.+.+ .+.++. ++|++.  .....+.    ..++..++++++++.      ++|+||.+
T Consensus        30 ~~~~I~iIG-~G~mG~~~a~~l~~-~G~~V~-~~dr~~--~~~~~l~----~~g~~~~~~~~e~~~------~aDvVi~~   94 (320)
T 4dll_A           30 YARKITFLG-TGSMGLPMARRLCE-AGYALQ-VWNRTP--ARAASLA----ALGATIHEQARAAAR------DADIVVSM   94 (320)
T ss_dssp             CCSEEEEEC-CTTTHHHHHHHHHH-TTCEEE-EECSCH--HHHHHHH----TTTCEEESSHHHHHT------TCSEEEEC
T ss_pred             CCCEEEEEC-ccHHHHHHHHHHHh-CCCeEE-EEcCCH--HHHHHHH----HCCCEeeCCHHHHHh------cCCEEEEE
Confidence            467999999 69999999999874 578876 467542  2223332    346777899999885      89999955


Q ss_pred             cCchhH-HHHH-----HHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeEE
Q 031216          114 TDASTV-YDNV-----KQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVS  159 (163)
Q Consensus       114 T~p~~~-~~~~-----~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv~  159 (163)
                      ...... .+.+     ...+..|..+|. ++..++...+++.+..++.++.+
T Consensus        95 vp~~~~~~~v~~~~~~~~~l~~~~~vi~-~st~~~~~~~~~~~~~~~~g~~~  145 (320)
T 4dll_A           95 LENGAVVQDVLFAQGVAAAMKPGSLFLD-MASITPREARDHAARLGALGIAH  145 (320)
T ss_dssp             CSSHHHHHHHHTTTCHHHHCCTTCEEEE-CSCCCHHHHHHHHHHHHHTTCEE
T ss_pred             CCCHHHHHHHHcchhHHhhCCCCCEEEe-cCCCCHHHHHHHHHHHHHcCCEE
Confidence            542333 3332     123445655554 45555677777777777666544

>3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_A* 3b20_A*

Probab=98.45  E-value=5.1e-07  Score=76.57  Aligned_cols=94  Identities=16%  Similarity=0.176  Sum_probs=63.6

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhc--CCcEEEEEEec-------------CCCCcchhhhc--c--CC-CCCCccee--C
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDS-------------HSVGEDIGMVC--D--ME-QPLEIPVM--S   92 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~--~~~eLvgvid~-------------~~~g~~~~~l~--g--~~-~~~gi~v~--~   92 (163)
                      |+||+|+|+ |++|+.++|.+.++  |+++++++.|.             +..|+-.+++.  +  +. ....++++  .
T Consensus         2 ~ikVgI~G~-G~IGr~v~r~l~~~~~~~~evvaInd~~~~~~~~~l~~~ds~~G~~~~~v~~~~~~l~v~g~~i~v~~~~   80 (339)
T 3b1j_A            2 TIRVAINGF-GRIGRNFLRCWFGRQNTDLEVVAINNTSDARTAAHLLEYDSVLGRFNADISYDENSITVNGKTMKIVCDR   80 (339)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHHCSCCSEEEEEEECSSCHHHHHHHHHCCTTTCCCCSCEEEETTEEEETTEEEEEECCS
T ss_pred             ceEEEEECC-CHHHHHHHHHHHhcCCCCeEEEEEecCCCHHHHHHHhccccccCCCCCcEEEcCCeeeecCceEEEEecC
Confidence            489999997 99999999999998  99999998764             11222211110  0  00 01123443  4


Q ss_pred             CHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCc
Q 031216           93 DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMR  132 (163)
Q Consensus        93 ~l~ell~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~  132 (163)
                      |++++...   +.++|+|+++|......+.+...++.|..
T Consensus        81 dp~~l~w~---~~~vDvV~e~tg~~~s~e~a~~~l~~Gak  117 (339)
T 3b1j_A           81 NPLNLPWK---EWDIDLVIESTGVFVTAEGASKHIQAGAK  117 (339)
T ss_dssp             CGGGSCTT---TTTCCEEEECSSSCCBHHHHHHHHHTTCS
T ss_pred             ChHHCccc---ccCCCEEEECCCccccHHHHHHHHHcCCc
Confidence            66665321   13799999888767778899999999977

>1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A*

Probab=98.45  E-value=1.9e-06  Score=73.61  Aligned_cols=92  Identities=12%  Similarity=0.050  Sum_probs=62.9

Q ss_pred             CeeEEEEcCCCHHHHHHHH-HHHhc--CCcEEEEEEecCCCCcchhhhccCCCCCCcceeC--CHHHHHhcccccCCccE
Q 031216           35 NIKVIINGAVKEIGRAAVI-AVTKA--RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS--DLTMVLGSISQSKARAV  109 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~-~i~~~--~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~--~l~ell~~~~~~~~~DV  109 (163)
                      |+||+|+||+|++|+.+++ .+.++  +.+++..+..+ ..|+.+..+-|    ..+.+.+  ++++ +.      ++|+
T Consensus         1 m~kVaIvGAtG~vG~~llr~ll~~~~~~~v~i~~~~~~-s~G~~v~~~~g----~~i~~~~~~~~~~-~~------~~Dv   68 (367)
T 1t4b_A            1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTS-QLGQAAPSFGG----TTGTLQDAFDLEA-LK------ALDI   68 (367)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESS-STTSBCCGGGT----CCCBCEETTCHHH-HH------TCSE
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhcCCCCeEEEEEEEeC-CCCCCccccCC----CceEEEecCChHH-hc------CCCE
Confidence            6899999999999999999 55544  34677655444 46765432222    2344432  4444 33      8999


Q ss_pred             EEEccCchhHHHHHHHHHHcCCc-EEEeCC
Q 031216          110 VIDFTDASTVYDNVKQATAFGMR-SVVYVP  138 (163)
Q Consensus       110 VIDfT~p~~~~~~~~~al~~G~~-vVigtt  138 (163)
                      |++++......+++..+++.|++ +||..+
T Consensus        69 Vf~a~g~~~s~~~a~~~~~~G~k~vVID~s   98 (367)
T 1t4b_A           69 IVTCQGGDYTNEIYPKLRESGWQGYWIDAA   98 (367)
T ss_dssp             EEECSCHHHHHHHHHHHHHTTCCCEEEECS
T ss_pred             EEECCCchhHHHHHHHHHHCCCCEEEEcCC
Confidence            99776666678999999999973 566554

>3tz6_A Aspartate-semialdehyde dehydrogenase; asadh, ASD, ASA, amino-acid biosynthesis, diaminopimelate biosynthesis, lysine biosynthesis; HET: SO4; 1.95A {Mycobacterium tuberculosis} PDB: 3vos_A* 3kub_A 3llg_A

Probab=98.44  E-value=5.4e-07  Score=76.55  Aligned_cols=91  Identities=14%  Similarity=0.118  Sum_probs=67.0

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhc--CCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHH-HHHhcccccCCccEEEE
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLT-MVLGSISQSKARAVVID  112 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~--~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~-ell~~~~~~~~~DVVID  112 (163)
                      +||+|+||+|..|+++++.+.++  |.++|+.+..++..|+.+. +.+    ....+ .+++ +.+      .++|+|+.
T Consensus         2 ~~VaIvGatG~vG~el~~lL~~h~fp~~el~~~~s~~~aG~~~~-~~~----~~~~~-~~~~~~~~------~~~Dvvf~   69 (344)
T 3tz6_A            2 LSIGIVGATGQVGQVMRTLLDERDFPASAVRFFASARSQGRKLA-FRG----QEIEV-EDAETADP------SGLDIALF   69 (344)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTSSCEEE-ETT----EEEEE-EETTTSCC------TTCSEEEE
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCceEEEEEECcccCCCcee-ecC----CceEE-EeCCHHHh------ccCCEEEE
Confidence            79999999999999999999988  8999998877777777655 221    12222 2222 122      38999996


Q ss_pred             ccCchhHHHHHHHHHHcCCcEEEeCC
Q 031216          113 FTDASTVYDNVKQATAFGMRSVVYVP  138 (163)
Q Consensus       113 fT~p~~~~~~~~~al~~G~~vVigtt  138 (163)
                      ++......+++..+++.|+.||--+.
T Consensus        70 a~~~~~s~~~a~~~~~~G~~vID~Sa   95 (344)
T 3tz6_A           70 SAGSAMSKVQAPRFAAAGVTVIDNSS   95 (344)
T ss_dssp             CSCHHHHHHHHHHHHHTTCEEEECSS
T ss_pred             CCChHHHHHHHHHHHhCCCEEEECCC
Confidence            66555568899999999998886444

>3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A*

Probab=98.44  E-value=2.9e-07  Score=78.64  Aligned_cols=101  Identities=18%  Similarity=0.116  Sum_probs=64.1

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe-cCCCCcc-----hhhhccCC-------------CCCCcceeC--
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID-SHSVGED-----IGMVCDME-------------QPLEIPVMS--   92 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid-~~~~g~~-----~~~l~g~~-------------~~~gi~v~~--   92 (163)
                      +|+||+|+|+ |++|+.++|.+.++|++||+++.| ....+.-     .....|..             ....+.++.  
T Consensus        16 ~~ikVgI~G~-G~iGr~llR~l~~~p~veivaindp~~~~~~~a~ll~~ds~hg~~~~~v~~~~~~l~v~g~~i~v~~~~   94 (354)
T 3cps_A           16 FQGTLGINGF-GRIGRLVLRACMERNDITVVAINDPFMDVEYMAYLLKYDSVHGNFNGTVEVSGKDLCINGKVVKVFQAK   94 (354)
T ss_dssp             --CEEEEECC-SHHHHHHHHHHHTCSSCEEEEEECTTSCHHHHHHHHHCCTTTCSCSSCEEECC-CEEETTEEEEEECCS
T ss_pred             cceEEEEECC-CHHHHHHHHHHHcCCCeEEEEecCCCCChhHhhhhhcccccCCCCCCcEEEeCCEEEECCeEEEEEecC
Confidence            4689999997 999999999999999999999988 3211100     00001100             001233442  


Q ss_pred             CHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCc-EEEeCC
Q 031216           93 DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMR-SVVYVP  138 (163)
Q Consensus        93 ~l~ell~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~-vVigtt  138 (163)
                      +++++...   +..+|+|+++|......+.+...++.|.+ +||-.+
T Consensus        95 dp~~i~w~---~~~vDvV~eatg~~~s~e~a~~~l~~GakkvVId~p  138 (354)
T 3cps_A           95 DPAEIPWG---ASGAQIVCESTGVFTTEEKASLHLKGGAKKVIISAP  138 (354)
T ss_dssp             CGGGCCHH---HHTCCEEEECSSSCCSHHHHGGGGTTTCSEEEESSC
T ss_pred             ChHHCCcc---cCCCCEEEECCCchhhHHHHHHHHHcCCcEEEEeCC
Confidence            55554210   02799999887667778899999999974 565343

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=98.39  E-value=3.5e-07  Score=71.95  Aligned_cols=113  Identities=21%  Similarity=0.078  Sum_probs=67.8

Q ss_pred             CCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEE
Q 031216           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (163)
Q Consensus        33 ~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVID  112 (163)
                      .+|+||+|+| +|+||..+++.+.+ .+.++..++|++.  ..+..+..   ..++..+.+..+.+.      .+|+||.
T Consensus        21 m~mmkI~IIG-~G~mG~~la~~l~~-~g~~V~~v~~r~~--~~~~~l~~---~~g~~~~~~~~~~~~------~aDvVil   87 (220)
T 4huj_A           21 QSMTTYAIIG-AGAIGSALAERFTA-AQIPAIIANSRGP--ASLSSVTD---RFGASVKAVELKDAL------QADVVIL   87 (220)
T ss_dssp             GGSCCEEEEE-CHHHHHHHHHHHHH-TTCCEEEECTTCG--GGGHHHHH---HHTTTEEECCHHHHT------TSSEEEE
T ss_pred             hcCCEEEEEC-CCHHHHHHHHHHHh-CCCEEEEEECCCH--HHHHHHHH---HhCCCcccChHHHHh------cCCEEEE
Confidence            3478999999 69999999999875 5788887677643  12222211   224444444445553      8999997


Q ss_pred             ccCchhHHHHHHHHH-HcCCcEEEeCCCCC-----HH------HHHHHHHHhhhcCeE
Q 031216          113 FTDASTVYDNVKQAT-AFGMRSVVYVPHIQ-----LE------TVSALSAFCDKASMV  158 (163)
Q Consensus       113 fT~p~~~~~~~~~al-~~G~~vVigttg~~-----~e------~~~~L~~~A~~~~Vv  158 (163)
                      ++.|....+.+.... ..++.+|.-+.++.     .+      ..+.|.+......|+
T Consensus        88 avp~~~~~~v~~~l~~~~~~ivi~~~~g~~~~~~~~~~~~~~~~~~~l~~~l~~~~vv  145 (220)
T 4huj_A           88 AVPYDSIADIVTQVSDWGGQIVVDASNAIDFPAFKPRDLGGRLSTEIVSELVPGAKVV  145 (220)
T ss_dssp             ESCGGGHHHHHTTCSCCTTCEEEECCCCBCTTTCCBCCCTTCCHHHHHHHHSTTCEEE
T ss_pred             eCChHHHHHHHHHhhccCCCEEEEcCCCCCcccccccccCCCcHHHHHHHHCCCCCEE
Confidence            777766666554321 13555554443552     11      345566655444444

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=98.39  E-value=2e-06  Score=69.46  Aligned_cols=108  Identities=9%  Similarity=0.060  Sum_probs=68.2

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEc
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDf  113 (163)
                      .|+||+|+| +|.||+.+++.+.+ .+.++. ++| +.  .....+.    ..++.+++++++++.      ++|+||.+
T Consensus         2 ~~m~i~iiG-~G~~G~~~a~~l~~-~g~~V~-~~~-~~--~~~~~~~----~~g~~~~~~~~~~~~------~~D~vi~~   65 (295)
T 1yb4_A            2 NAMKLGFIG-LGIMGSPMAINLAR-AGHQLH-VTT-IG--PVADELL----SLGAVNVETARQVTE------FADIIFIM   65 (295)
T ss_dssp             --CEEEECC-CSTTHHHHHHHHHH-TTCEEE-ECC-SS--CCCHHHH----TTTCBCCSSHHHHHH------TCSEEEEC
T ss_pred             CCCEEEEEc-cCHHHHHHHHHHHh-CCCEEE-EEc-CH--HHHHHHH----HcCCcccCCHHHHHh------cCCEEEEE
Confidence            457999999 69999999999875 578876 455 32  2222332    235667789999875      89999966


Q ss_pred             cCchhHHHHHHH-------HHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeE
Q 031216          114 TDASTVYDNVKQ-------ATAFGMRSVVYVPHIQLETVSALSAFCDKASMV  158 (163)
Q Consensus       114 T~p~~~~~~~~~-------al~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv  158 (163)
                      +++....+.+..       .+..|..+|.-+++ .+...++|.+..++.++.
T Consensus        66 vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~-~~~~~~~l~~~~~~~g~~  116 (295)
T 1yb4_A           66 VPDTPQVEDVLFGEHGCAKTSLQGKTIVDMSSI-SPIETKRFAQRVNEMGAD  116 (295)
T ss_dssp             CSSHHHHHHHHHSTTSSTTSCCTTEEEEECSCC-CHHHHHHHHHHHHTTTEE
T ss_pred             CCCHHHHHHHHhCchhHhhcCCCCCEEEECCCC-CHHHHHHHHHHHHHcCCe
Confidence            644443333332       24456666554444 455567777776665543

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=98.39  E-value=3.3e-06  Score=68.52  Aligned_cols=108  Identities=13%  Similarity=0.066  Sum_probs=72.8

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEccC
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT~  115 (163)
                      +||+|+| +|.||+.+++.+.+ .+.++. ++|++.  .....+.    ..++..++++++++.      ++|+||.+..
T Consensus         2 ~~i~iIG-~G~mG~~~a~~l~~-~G~~V~-~~dr~~--~~~~~~~----~~g~~~~~~~~~~~~------~aDvvi~~vp   66 (287)
T 3pef_A            2 QKFGFIG-LGIMGSAMAKNLVK-AGCSVT-IWNRSP--EKAEELA----ALGAERAATPCEVVE------SCPVTFAMLA   66 (287)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHH-TTCEEE-EECSSG--GGGHHHH----HTTCEECSSHHHHHH------HCSEEEECCS
T ss_pred             CEEEEEe-ecHHHHHHHHHHHH-CCCeEE-EEcCCH--HHHHHHH----HCCCeecCCHHHHHh------cCCEEEEEcC
Confidence            6899999 69999999999875 578877 567643  2223332    346777899999885      7899995554


Q ss_pred             -chhHHHHH------HHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeEE
Q 031216          116 -ASTVYDNV------KQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVS  159 (163)
Q Consensus       116 -p~~~~~~~------~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv~  159 (163)
                       |....+.+      ...++.|..+|. +++.+++...++.+..++.++.+
T Consensus        67 ~~~~~~~v~~~~~~l~~~l~~~~~vi~-~st~~~~~~~~~~~~~~~~g~~~  116 (287)
T 3pef_A           67 DPAAAEEVCFGKHGVLEGIGEGRGYVD-MSTVDPATSQRIGVAVVAKGGRF  116 (287)
T ss_dssp             SHHHHHHHHHSTTCHHHHCCTTCEEEE-CSCCCHHHHHHHHHHHHHTTCEE
T ss_pred             CHHHHHHHHcCcchHhhcCCCCCEEEe-CCCCCHHHHHHHHHHHHHhCCEE
Confidence             33344433      234556665544 56666777777877777665543

>2x5j_O E4PDH, D-erythrose-4-phosphate dehydrogenase; oxidoreductase, hydride transfer, aldehyde dehydrogenase, PY biosynthesis; 2.30A {Escherichia coli} PDB: 2xf8_A* 2x5k_O*

Probab=98.39  E-value=8.1e-07  Score=75.30  Aligned_cols=100  Identities=23%  Similarity=0.189  Sum_probs=66.0

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHh---cCCcEEEEEEecC-------------CCCcchhhh------ccCCCCCCccee-
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTK---ARGMEVAGAIDSH-------------SVGEDIGMV------CDMEQPLEIPVM-   91 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~---~~~~eLvgvid~~-------------~~g~~~~~l------~g~~~~~gi~v~-   91 (163)
                      ++||+|+|+ |++|+.++|.+.+   +|+++|+++.|..             ..|+-.+++      +-.. ...+.++ 
T Consensus         2 ~ikVgI~G~-G~iGr~l~r~l~~~~~~~~~eivai~~~~~~~~~~~ll~~ds~~g~~~~~v~~~~~~l~v~-g~~i~v~~   79 (339)
T 2x5j_O            2 TVRVAINGF-GRIGRNVVRALYESGRRAEITVVAINELADAAGMAHLLKYDTSHGRFAWEVRQERDQLFVG-DDAIRVLH   79 (339)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHHTSGGGTEEEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEET-TEEEEEEC
T ss_pred             CeEEEEECc-CHHHHHHHHHHHcCCCCCCEEEEEEeCCCCHHHHHHHhcccccCCCCCceEEEcCCeeEEC-CEEEEEEe
Confidence            489999996 9999999999998   8999999988741             111111000      0000 1123444 


Q ss_pred             -CCHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCc-EEEeCCC
Q 031216           92 -SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMR-SVVYVPH  139 (163)
Q Consensus        92 -~~l~ell~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~-vVigttg  139 (163)
                       .|++++...   +.++|+|+++|......+.+...++.|.+ |||-.++
T Consensus        80 ~~dp~~l~~~---~~~vDvV~e~tg~~~s~e~a~~~l~~GakkVVId~~a  126 (339)
T 2x5j_O           80 ERSLQSLPWR---ELGVDVVLDCTGVYGSREHGEAHIAAGAKKVLFSHPG  126 (339)
T ss_dssp             CSSGGGCCHH---HHTCSEEEECSSSCCSHHHHHHHHHTTCSEEEESSCC
T ss_pred             cCChHHCccc---ccCCCEEEECCCccccHHHHHHHHHcCCCEEEEeccc
Confidence             355554210   12799999888777778999999999987 5554444

>2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp}

Probab=98.38  E-value=1.2e-06  Score=77.47  Aligned_cols=96  Identities=14%  Similarity=0.145  Sum_probs=68.5

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcE---EEEEEecCCCCcchhhhccCCCCCCccee-CCHHHHHhcccccCCccEE
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGME---VAGAIDSHSVGEDIGMVCDMEQPLEIPVM-SDLTMVLGSISQSKARAVV  110 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~e---Lvgvid~~~~g~~~~~l~g~~~~~gi~v~-~~l~ell~~~~~~~~~DVV  110 (163)
                      +.||.|+| .|.||+.+++.+.++++++   ++ ++|....+.++.+..|.. ...+.+. ++.++++..+.  .+.|+|
T Consensus        13 ~~rVlIIG-aGgVG~~va~lla~~~dv~~~~I~-vaD~~~~~~~~~~~~g~~-~~~~~Vdadnv~~~l~aLl--~~~DvV   87 (480)
T 2ph5_A           13 KNRFVILG-FGCVGQALMPLIFEKFDIKPSQVT-IIAAEGTKVDVAQQYGVS-FKLQQITPQNYLEVIGSTL--EENDFL   87 (480)
T ss_dssp             CSCEEEEC-CSHHHHHHHHHHHHHBCCCGGGEE-EEESSCCSCCHHHHHTCE-EEECCCCTTTHHHHTGGGC--CTTCEE
T ss_pred             CCCEEEEC-cCHHHHHHHHHHHhCCCCceeEEE-EeccchhhhhHHhhcCCc-eeEEeccchhHHHHHHHHh--cCCCEE
Confidence            47899999 5999999999999999884   44 446555556655555432 2233343 44444443222  134999


Q ss_pred             EEccCchhHHHHHHHHHHcCCcEEE
Q 031216          111 IDFTDASTVYDNVKQATAFGMRSVV  135 (163)
Q Consensus       111 IDfT~p~~~~~~~~~al~~G~~vVi  135 (163)
                      |+.+.|....+.+++|+++|++.+-
T Consensus        88 IN~s~~~~~l~Im~acleaGv~YlD  112 (480)
T 2ph5_A           88 IDVSIGISSLALIILCNQKGALYIN  112 (480)
T ss_dssp             EECCSSSCHHHHHHHHHHHTCEEEE
T ss_pred             EECCccccCHHHHHHHHHcCCCEEE
Confidence            9999999999999999999999886

>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}

Probab=98.37  E-value=5.9e-07  Score=65.77  Aligned_cols=106  Identities=13%  Similarity=0.182  Sum_probs=80.5

Q ss_pred             CCCeeEEEEcCC---CHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccE
Q 031216           33 QSNIKVIINGAV---KEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV  109 (163)
Q Consensus        33 ~~~irV~VvGa~---G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DV  109 (163)
                      +.|-+|+|+|++   ++.|..+.+.+.+. ++++.. +.+..     .++      .|.+.|.|++++-      . +|+
T Consensus         2 ~~p~siAVVGaS~~~~~~g~~v~~~L~~~-g~~V~p-VnP~~-----~~i------~G~~~y~sl~dlp------~-vDl   61 (122)
T 3ff4_A            2 NAMKKTLILGATPETNRYAYLAAERLKSH-GHEFIP-VGRKK-----GEV------LGKTIINERPVIE------G-VDT   61 (122)
T ss_dssp             CCCCCEEEETCCSCTTSHHHHHHHHHHHH-TCCEEE-ESSSC-----SEE------TTEECBCSCCCCT------T-CCE
T ss_pred             CCCCEEEEEccCCCCCCHHHHHHHHHHHC-CCeEEE-ECCCC-----CcC------CCeeccCChHHCC------C-CCE
Confidence            345679999997   67999999999864 667664 33321     222      3567888888763      5 999


Q ss_pred             EEEccCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeEEcC
Q 031216          110 VIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVSTG  161 (163)
Q Consensus       110 VIDfT~p~~~~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv~tg  161 (163)
                      ++.|+.|+...+.++.|.+.|++.|+-.+|+..   +++.++|++.|+-.-|
T Consensus        62 avi~~p~~~v~~~v~e~~~~g~k~v~~~~G~~~---~e~~~~a~~~Girvv~  110 (122)
T 3ff4_A           62 VTLYINPQNQLSEYNYILSLKPKRVIFNPGTEN---EELEEILSENGIEPVI  110 (122)
T ss_dssp             EEECSCHHHHGGGHHHHHHHCCSEEEECTTCCC---HHHHHHHHHTTCEEEE
T ss_pred             EEEEeCHHHHHHHHHHHHhcCCCEEEECCCCCh---HHHHHHHHHcCCeEEC
Confidence            998999999999999999999988888889853   4688888888864433

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=98.37  E-value=2.2e-06  Score=70.29  Aligned_cols=107  Identities=15%  Similarity=0.110  Sum_probs=67.7

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT  114 (163)
                      ++||+|+| .|.||+.+++.+.+ .+.++. ++|++.  .....+.    ..++.++.++++++.      ++|+||.++
T Consensus        30 ~~~I~iIG-~G~mG~~~a~~l~~-~g~~V~-~~~~~~--~~~~~~~----~~g~~~~~~~~~~~~------~~DvVi~av   94 (316)
T 2uyy_A           30 DKKIGFLG-LGLMGSGIVSNLLK-MGHTVT-VWNRTA--EKCDLFI----QEGARLGRTPAEVVS------TCDITFACV   94 (316)
T ss_dssp             SSCEEEEC-CSHHHHHHHHHHHH-TTCCEE-EECSSG--GGGHHHH----HTTCEECSCHHHHHH------HCSEEEECC
T ss_pred             CCeEEEEc-ccHHHHHHHHHHHh-CCCEEE-EEeCCH--HHHHHHH----HcCCEEcCCHHHHHh------cCCEEEEeC
Confidence            47999999 69999999999875 567764 567542  1222222    235566788888875      799999666


Q ss_pred             C-chhHHHHHHH------HHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCe
Q 031216          115 D-ASTVYDNVKQ------ATAFGMRSVVYVPHIQLETVSALSAFCDKASM  157 (163)
Q Consensus       115 ~-p~~~~~~~~~------al~~G~~vVigttg~~~e~~~~L~~~A~~~~V  157 (163)
                      . |....+.+..      .+..|..+|.-+ ..+.+..++|.+...+.++
T Consensus        95 ~~~~~~~~v~~~~~~~~~~l~~~~~vv~~s-~~~~~~~~~l~~~~~~~~~  143 (316)
T 2uyy_A           95 SDPKAAKDLVLGPSGVLQGIRPGKCYVDMS-TVDADTVTELAQVIVSRGG  143 (316)
T ss_dssp             SSHHHHHHHHHSTTCGGGGCCTTCEEEECS-CCCHHHHHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHcCchhHhhcCCCCCEEEECC-CCCHHHHHHHHHHHHHcCC
Confidence            5 4444444432      234566665433 4556666677766654443

>2d2i_A Glyceraldehyde 3-phosphate dehydrogenase; rossmann fold, protein-NADP+ complex, oxidoreductase; HET: NAP; 2.50A {Synechococcus SP} PDB: 2duu_A

Probab=98.36  E-value=8.9e-07  Score=76.28  Aligned_cols=94  Identities=16%  Similarity=0.176  Sum_probs=63.3

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhc--CCcEEEEEEec-------------CCCCcchhhhc--c--CC-CCCCccee--C
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDS-------------HSVGEDIGMVC--D--ME-QPLEIPVM--S   92 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~--~~~eLvgvid~-------------~~~g~~~~~l~--g--~~-~~~gi~v~--~   92 (163)
                      |+||+|+|+ |++||.++|.+.++  ++++|+++-|.             +..|+-.+++.  +  +. ....+.++  .
T Consensus         2 ~ikVgInGf-GrIGr~vlR~l~~~~~~~veIVaInd~~d~~~~a~ll~yds~~G~~~~~v~~~~~~l~v~g~~i~v~~~~   80 (380)
T 2d2i_A            2 TIRVAINGF-GRIGRNFLRCWFGRQNTDLEVVAINNTSDARTAAHLLEYDSVLGRFNADISYDENSITVNGKTMKIVCDR   80 (380)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHHCSSCSEEEEEEECSSCHHHHHHHHHCCTTTCCCCSCEEEETTEEEETTEEEEEECCS
T ss_pred             CcEEEEECc-CHHHHHHHHHHhcCCCCCEEEEEEecCCCHHHHHHhhcccccCCCCCCcEEEeCCeEEECCeEEEEEecC
Confidence            489999996 99999999999988  99999998773             12232211110  0  00 01123343  4


Q ss_pred             CHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCc
Q 031216           93 DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMR  132 (163)
Q Consensus        93 ~l~ell~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~  132 (163)
                      |++++...   +..+|+|+++|......+.+...++.|..
T Consensus        81 dp~~l~w~---~~gvDvV~e~TG~f~s~e~a~~hl~aGak  117 (380)
T 2d2i_A           81 NPLNLPWK---EWDIDLVIESTGVFVTAEGASKHIQAGAK  117 (380)
T ss_dssp             CGGGCCHH---HHTCCEEEECSSSCCBHHHHHHHHHTTCS
T ss_pred             ChHHCCcc---cCCCCEEEECCCccccHHHHHHHHHcCCc
Confidence            56664320   12799999888777778999999999977

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=98.35  E-value=4e-06  Score=69.12  Aligned_cols=112  Identities=13%  Similarity=0.098  Sum_probs=73.2

Q ss_pred             CCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEE
Q 031216           32 PQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI  111 (163)
Q Consensus        32 ~~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVI  111 (163)
                      ...|+||+|+| +|.||+.+++.+.+ .+.++. ++|++.  ..+..+.    ..++..++++++++.      .+|+||
T Consensus        18 ~~~m~~I~iIG-~G~mG~~~A~~l~~-~G~~V~-~~dr~~--~~~~~l~----~~g~~~~~~~~~~~~------~aDvvi   82 (310)
T 3doj_A           18 GSHMMEVGFLG-LGIMGKAMSMNLLK-NGFKVT-VWNRTL--SKCDELV----EHGASVCESPAEVIK------KCKYTI   82 (310)
T ss_dssp             CCCSCEEEEEC-CSHHHHHHHHHHHH-TTCEEE-EECSSG--GGGHHHH----HTTCEECSSHHHHHH------HCSEEE
T ss_pred             cccCCEEEEEC-ccHHHHHHHHHHHH-CCCeEE-EEeCCH--HHHHHHH----HCCCeEcCCHHHHHH------hCCEEE
Confidence            44578999999 69999999999875 578876 467543  2223332    346677889999885      789998


Q ss_pred             EccC-chhHHHHH---H---HHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeEE
Q 031216          112 DFTD-ASTVYDNV---K---QATAFGMRSVVYVPHIQLETVSALSAFCDKASMVS  159 (163)
Q Consensus       112 DfT~-p~~~~~~~---~---~al~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv~  159 (163)
                      .+.+ |....+.+   .   ..+..|..+ +-++..++....++.+..++.++.+
T Consensus        83 ~~vp~~~~~~~v~~~~~~l~~~l~~g~~v-v~~st~~~~~~~~~~~~~~~~g~~~  136 (310)
T 3doj_A           83 AMLSDPCAALSVVFDKGGVLEQICEGKGY-IDMSTVDAETSLKINEAITGKGGRF  136 (310)
T ss_dssp             ECCSSHHHHHHHHHSTTCGGGGCCTTCEE-EECSCCCHHHHHHHHHHHHHTTCEE
T ss_pred             EEcCCHHHHHHHHhCchhhhhccCCCCEE-EECCCCCHHHHHHHHHHHHHcCCEE
Confidence            5553 23333333   1   223445544 4455666777778877776665533

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=98.35  E-value=2.5e-06  Score=70.52  Aligned_cols=108  Identities=18%  Similarity=0.169  Sum_probs=69.2

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCc-EEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEE
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~-eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVID  112 (163)
                      .|+||+|+| +|.||..+++.+.+. +. ++. ++|++........+.    ..++..++++++++.      ++|+||.
T Consensus        23 ~~~~I~iIG-~G~mG~~~A~~L~~~-G~~~V~-~~dr~~~~~~~~~~~----~~g~~~~~~~~e~~~------~aDvVi~   89 (312)
T 3qsg_A           23 NAMKLGFIG-FGEAASAIASGLRQA-GAIDMA-AYDAASAESWRPRAE----ELGVSCKASVAEVAG------ECDVIFS   89 (312)
T ss_dssp             --CEEEEEC-CSHHHHHHHHHHHHH-SCCEEE-EECSSCHHHHHHHHH----HTTCEECSCHHHHHH------HCSEEEE
T ss_pred             CCCEEEEEC-ccHHHHHHHHHHHHC-CCCeEE-EEcCCCCHHHHHHHH----HCCCEEeCCHHHHHh------cCCEEEE
Confidence            368999999 699999999998854 66 555 667631001112221    346777889999885      7999997


Q ss_pred             ccCchhHHHHHHHHHH---cCCcEEEeCCCCCHHHHHHHHHHhhhc
Q 031216          113 FTDASTVYDNVKQATA---FGMRSVVYVPHIQLETVSALSAFCDKA  155 (163)
Q Consensus       113 fT~p~~~~~~~~~al~---~G~~vVigttg~~~e~~~~L~~~A~~~  155 (163)
                      +..+....+.+....+   .|. +|+-.+...+....++.+..++.
T Consensus        90 ~vp~~~~~~~~~~l~~~l~~~~-ivvd~st~~~~~~~~~~~~~~~~  134 (312)
T 3qsg_A           90 LVTAQAALEVAQQAGPHLCEGA-LYADFTSCSPAVKRAIGDVISRH  134 (312)
T ss_dssp             CSCTTTHHHHHHHHGGGCCTTC-EEEECCCCCHHHHHHHHHHHHHH
T ss_pred             ecCchhHHHHHHhhHhhcCCCC-EEEEcCCCCHHHHHHHHHHHHhh
Confidence            7666655555544333   343 55555566676667776666554

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=98.34  E-value=6e-06  Score=70.11  Aligned_cols=112  Identities=12%  Similarity=0.043  Sum_probs=70.9

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT  114 (163)
                      ++||+|+| +|.||+.+++.+.+ .+.++. ++|++.  ..+..+.    ..++..++++++++..   ...+|+||.+.
T Consensus        22 ~mkIgiIG-lG~mG~~~A~~L~~-~G~~V~-v~dr~~--~~~~~l~----~~g~~~~~s~~e~~~~---a~~~DvVi~~v   89 (358)
T 4e21_A           22 SMQIGMIG-LGRMGADMVRRLRK-GGHECV-VYDLNV--NAVQALE----REGIAGARSIEEFCAK---LVKPRVVWLMV   89 (358)
T ss_dssp             CCEEEEEC-CSHHHHHHHHHHHH-TTCEEE-EECSCH--HHHHHHH----TTTCBCCSSHHHHHHH---SCSSCEEEECS
T ss_pred             CCEEEEEC-chHHHHHHHHHHHh-CCCEEE-EEeCCH--HHHHHHH----HCCCEEeCCHHHHHhc---CCCCCEEEEeC
Confidence            48999999 79999999999885 577766 567542  2223332    3466778899998862   13569999666


Q ss_pred             CchhHHHHHHHH---HHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeEE
Q 031216          115 DASTVYDNVKQA---TAFGMRSVVYVPHIQLETVSALSAFCDKASMVS  159 (163)
Q Consensus       115 ~p~~~~~~~~~a---l~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv~  159 (163)
                      .+..+.+.+...   ++.|.-+|. .+...+....++.+..++.++-|
T Consensus        90 p~~~v~~vl~~l~~~l~~g~iiId-~st~~~~~~~~~~~~l~~~g~~~  136 (358)
T 4e21_A           90 PAAVVDSMLQRMTPLLAANDIVID-GGNSHYQDDIRRADQMRAQGITY  136 (358)
T ss_dssp             CGGGHHHHHHHHGGGCCTTCEEEE-CSSCCHHHHHHHHHHHHTTTCEE
T ss_pred             CHHHHHHHHHHHHhhCCCCCEEEe-CCCCChHHHHHHHHHHHHCCCEE
Confidence            555334444333   334555554 44444556666776666666543

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=98.31  E-value=3.3e-06  Score=68.27  Aligned_cols=107  Identities=15%  Similarity=0.116  Sum_probs=70.2

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEccC
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT~  115 (163)
                      +||+|+| +|.||+.+++.+.+ .+.++. ++|++.  .....+.    ..++.+++++++++.      .+|+||.+++
T Consensus         1 m~i~iiG-~G~mG~~~a~~l~~-~g~~V~-~~~~~~--~~~~~~~----~~g~~~~~~~~~~~~------~~Dvvi~~vp   65 (296)
T 2gf2_A            1 MPVGFIG-LGNMGNPMAKNLMK-HGYPLI-IYDVFP--DACKEFQ----DAGEQVVSSPADVAE------KADRIITMLP   65 (296)
T ss_dssp             CCEEEEC-CSTTHHHHHHHHHH-TTCCEE-EECSST--HHHHHHH----TTTCEECSSHHHHHH------HCSEEEECCS
T ss_pred             CeEEEEe-ccHHHHHHHHHHHH-CCCEEE-EEeCCH--HHHHHHH----HcCCeecCCHHHHHh------cCCEEEEeCC
Confidence            4899999 69999999999875 467765 567542  2223332    346777889998875      7899996663


Q ss_pred             ch-hHHHHHHH------HHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeE
Q 031216          116 AS-TVYDNVKQ------ATAFGMRSVVYVPHIQLETVSALSAFCDKASMV  158 (163)
Q Consensus       116 p~-~~~~~~~~------al~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv  158 (163)
                      +. ...+.+..      .++.|..+|. +.+.+.++..++.+...+.++.
T Consensus        66 ~~~~~~~v~~~~~~~~~~l~~~~~vv~-~s~~~~~~~~~~~~~~~~~g~~  114 (296)
T 2gf2_A           66 TSINAIEAYSGANGILKKVKKGSLLID-SSTIDPAVSKELAKEVEKMGAV  114 (296)
T ss_dssp             SHHHHHHHHHSTTSGGGTCCTTCEEEE-CSCCCHHHHHHHHHHHHHTTCE
T ss_pred             CHHHHHHHHhCchhHHhcCCCCCEEEE-CCCCCHHHHHHHHHHHHHcCCE
Confidence            33 33343332      2345665555 7788888877776665544443

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=98.31  E-value=5e-06  Score=67.36  Aligned_cols=107  Identities=15%  Similarity=0.172  Sum_probs=69.0

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT  114 (163)
                      ++||+|+| +|.||+.+++.+.+ .+.++. ++|+..  .....+.    ..++.+++++++++.      ++|+||.++
T Consensus         4 ~~~i~iiG-~G~~G~~~a~~l~~-~g~~V~-~~~~~~--~~~~~~~----~~g~~~~~~~~~~~~------~~D~vi~~v   68 (301)
T 3cky_A            4 SIKIGFIG-LGAMGKPMAINLLK-EGVTVY-AFDLME--ANVAAVV----AQGAQACENNQKVAA------ASDIIFTSL   68 (301)
T ss_dssp             CCEEEEEC-CCTTHHHHHHHHHH-TTCEEE-EECSSH--HHHHHHH----TTTCEECSSHHHHHH------HCSEEEECC
T ss_pred             CCEEEEEC-ccHHHHHHHHHHHH-CCCeEE-EEeCCH--HHHHHHH----HCCCeecCCHHHHHh------CCCEEEEEC
Confidence            57999999 69999999999875 578876 567532  1222222    236667889999885      799999666


Q ss_pred             CchhH-HHHH------HHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCe
Q 031216          115 DASTV-YDNV------KQATAFGMRSVVYVPHIQLETVSALSAFCDKASM  157 (163)
Q Consensus       115 ~p~~~-~~~~------~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~V  157 (163)
                      ++... .+.+      ...+..|..+|.-+++. ++..++|.+...+.++
T Consensus        69 p~~~~~~~v~~~~~~l~~~l~~~~~vv~~~~~~-~~~~~~l~~~~~~~g~  117 (301)
T 3cky_A           69 PNAGIVETVMNGPGGVLSACKAGTVIVDMSSVS-PSSTLKMAKVAAEKGI  117 (301)
T ss_dssp             SSHHHHHHHHHSTTCHHHHSCTTCEEEECCCCC-HHHHHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHcCcchHhhcCCCCCEEEECCCCC-HHHHHHHHHHHHHcCC
Confidence            43333 3333      23455677776655555 4455667666655444

>3a06_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; MEP pathway, isoprene biosynthesis, metal- NADP, oxidoreductase; HET: NDP; 2.00A {Thermotoga maritima} PDB: 3a14_A*

Probab=98.31  E-value=1.7e-06  Score=74.28  Aligned_cols=115  Identities=10%  Similarity=0.069  Sum_probs=80.1

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCccee-----C--------------CHHH
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM-----S--------------DLTM   96 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~-----~--------------~l~e   96 (163)
                      .||+|+|++|.+|+.+++.+.+++.++++++...... ..+.+..-   ..+..++     .              .+.+
T Consensus         4 k~i~ILGsTGSIG~~tldVi~~~~~~~vvaL~a~~n~-~~l~~q~~---~f~p~~v~v~~~~~~~~~l~~~~~G~~~l~e   79 (376)
T 3a06_A            4 RTLVILGATGSIGTQTLDVLKKVKGIRLIGISFHSNL-ELAFKIVK---EFNVKNVAITGDVEFEDSSINVWKGSHSIEE   79 (376)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHSCSEEEEEEEESSCH-HHHHHHHH---HHTCCEEEECSSCCCCCSSSEEEESTTHHHH
T ss_pred             ceEEEECCCCHHHHHHHHHHHhCCCeEEEEEEccCCH-HHHHHHHH---HcCCCEEEEccHHHHHHHHHHHccCHHHHHH
Confidence            7899999999999999999998888999999653211 01111100   1111111     1              2245


Q ss_pred             HHhcccccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeE
Q 031216           97 VLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMV  158 (163)
Q Consensus        97 ll~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv  158 (163)
                      ++..    .++|+|+....-.........|+++|++|.+..-+......+.+.++++++++-
T Consensus        80 l~~~----~~~D~Vv~AivG~aGL~ptlaAi~aGK~vaLANKEsLV~aG~li~~~a~~~g~~  137 (376)
T 3a06_A           80 MLEA----LKPDITMVAVSGFSGLRAVLASLEHSKRVCLANKESLVCGGFLVKKKLKEKGTE  137 (376)
T ss_dssp             HHHH----HCCSEEEECCCSTTHHHHHHHHHHHCSEEEECCSHHHHHHHHHHHHHHHHHCCE
T ss_pred             HhcC----CCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEeChHHHHhhHHHHHHHHHHcCCE
Confidence            5543    579999977766777899999999999999955554556677888888887653

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=98.28  E-value=5.9e-06  Score=68.47  Aligned_cols=108  Identities=13%  Similarity=0.099  Sum_probs=74.8

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT  114 (163)
                      |.||+++| +|.||..+++.+.+ .+.++. +.|++.  .....+.    ..|..+.+++.++..      ..|+|| .+
T Consensus         3 M~kIgfIG-lG~MG~~mA~~L~~-~G~~v~-v~dr~~--~~~~~l~----~~Ga~~a~s~~e~~~------~~dvv~-~~   66 (300)
T 3obb_A            3 MKQIAFIG-LGHMGAPMATNLLK-AGYLLN-VFDLVQ--SAVDGLV----AAGASAARSARDAVQ------GADVVI-SM   66 (300)
T ss_dssp             CCEEEEEC-CSTTHHHHHHHHHH-TTCEEE-EECSSH--HHHHHHH----HTTCEECSSHHHHHT------TCSEEE-EC
T ss_pred             cCEEEEee-ehHHHHHHHHHHHh-CCCeEE-EEcCCH--HHHHHHH----HcCCEEcCCHHHHHh------cCCcee-ec
Confidence            67999999 89999999999984 688877 577643  2233333    346777899999885      899988 44


Q ss_pred             Cchh--HHHHHHH------HHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeEE
Q 031216          115 DAST--VYDNVKQ------ATAFGMRSVVYVPHIQLETVSALSAFCDKASMVS  159 (163)
Q Consensus       115 ~p~~--~~~~~~~------al~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv~  159 (163)
                      .|+.  +.+.+..      .++.|. +||-.+..++++..++.+.+++.++-|
T Consensus        67 l~~~~~v~~V~~~~~g~~~~~~~g~-iiId~sT~~p~~~~~~a~~~~~~G~~~  118 (300)
T 3obb_A           67 LPASQHVEGLYLDDDGLLAHIAPGT-LVLECSTIAPTSARKIHAAARERGLAM  118 (300)
T ss_dssp             CSCHHHHHHHHHSSSSSTTSCCC-C-EEEECSCCCHHHHHHHHHHHHTTTCEE
T ss_pred             CCchHHHHHHHhchhhhhhcCCCCC-EEEECCCCCHHHHHHHHHHHHHcCCEE
Confidence            4433  3333221      122343 555566677889999999999888765

>1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=98.27  E-value=1.7e-06  Score=73.16  Aligned_cols=95  Identities=21%  Similarity=0.187  Sum_probs=62.9

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhc--CCcEEEEEEecC-------------CCCcchhhh------ccCCCCCCcceeC--
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDSH-------------SVGEDIGMV------CDMEQPLEIPVMS--   92 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~--~~~eLvgvid~~-------------~~g~~~~~l------~g~~~~~gi~v~~--   92 (163)
                      +||+|+|+ |++|+.++|.+.++  |+++|+++-|..             ..|+-.+++      +... ...+.++.  
T Consensus         1 ~kVgI~G~-G~iGr~llR~l~~~~~p~~eivain~~~~~~~~~~ll~~ds~~g~~~~~v~~~~~~l~v~-g~~i~v~~~~   78 (332)
T 1hdg_O            1 ARVAINGF-GRIGRLVYRIIYERKNPDIEVVAINDLTDTKTLAHLLKYDSVHKKFPGKVEYTENSLIVD-GKEIKVFAEP   78 (332)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCTTCEEEEEECSSCHHHHHHHHHCCTTTCCCSSCEEECSSEEEET-TEEEEEECCS
T ss_pred             CEEEEEcc-CHHHHHHHHHHHhCCCCCeEEEEEEcCCChHHhhhhccCcCcCCCcCCcEEEcCCEEEEC-CeEEEEEecC
Confidence            58999997 99999999999999  999999998731             122211110      0000 11344442  


Q ss_pred             CHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCc-EEE
Q 031216           93 DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMR-SVV  135 (163)
Q Consensus        93 ~l~ell~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~-vVi  135 (163)
                      +++++...   +.++|+|+++|......+.+...++.|.+ +||
T Consensus        79 dp~~l~w~---~~~vDvV~~atg~~~s~e~a~~~l~aGakkvVI  119 (332)
T 1hdg_O           79 DPSKLPWK---DLGVDFVIESTGVFRNREKAELHLQAGAKKVII  119 (332)
T ss_dssp             SGGGSCHH---HHTCCEEEECSSSCCBHHHHTHHHHTTCSEEEE
T ss_pred             ChHHCccc---ccCCCEEEECCccchhHHHHHHHHHcCCcEEEE
Confidence            55554210   12799999877666678899999999973 554

>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1

Probab=98.23  E-value=3.6e-06  Score=73.63  Aligned_cols=109  Identities=15%  Similarity=0.132  Sum_probs=81.9

Q ss_pred             CeeEEEEcCCC---HHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEE
Q 031216           35 NIKVIINGAVK---EIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI  111 (163)
Q Consensus        35 ~irV~VvGa~G---~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVI  111 (163)
                      +.+|+|+|+++   ++|..+++.+.+.. -..+..+++.  +.   +      -.|+++|.+++++.+      .+|+++
T Consensus         8 p~siAVvGas~~~~~~g~~v~~~l~~~g-~~~v~pVnP~--~~---~------i~G~~~y~sl~~lp~------~~Dlav   69 (457)
T 2csu_A            8 PKGIAVIGASNDPKKLGYEVFKNLKEYK-KGKVYPVNIK--EE---E------VQGVKAYKSVKDIPD------EIDLAI   69 (457)
T ss_dssp             CSEEEEETCCSCTTSHHHHHHHHHTTCC-SSEEEEECSS--CS---E------ETTEECBSSTTSCSS------CCSEEE
T ss_pred             CCeEEEECcCCCCCchHHHHHHHHHHcC-CCEEEEECCC--CC---e------ECCEeccCCHHHcCC------CCCEEE
Confidence            56899999974   78999999997665 3344455543  21   2      247899999998763      899999


Q ss_pred             EccCchhHHHHHHHHHHcCCcEEE-eCCCCCH--H----HHHHHHHHhhhcCeEEcC
Q 031216          112 DFTDASTVYDNVKQATAFGMRSVV-YVPHIQL--E----TVSALSAFCDKASMVSTG  161 (163)
Q Consensus       112 DfT~p~~~~~~~~~al~~G~~vVi-gttg~~~--e----~~~~L~~~A~~~~Vv~tg  161 (163)
                      .|++|+.+.+.++.|.+.|++.++ =+.|+.+  +    ..++|.++|++.++-.-|
T Consensus        70 i~vp~~~~~~~v~e~~~~Gi~~vv~~s~G~~e~g~~g~~~~~~l~~~a~~~g~~viG  126 (457)
T 2csu_A           70 IVVPKRFVKDTLIQCGEKGVKGVVIITAGFGETGEEGKREEKELVEIAHKYGMRIIG  126 (457)
T ss_dssp             ECSCHHHHHHHHHHHHHHTCCEEEECCCSSTTSCHHHHHHHHHHHHHHHHHTCEEEC
T ss_pred             EecCHHHHHHHHHHHHHcCCCEEEEecCCCCccccccHHHHHHHHHHHHHcCCEEEc
Confidence            899999999999999999998654 4447742  1    257899999998876554

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=98.23  E-value=1.3e-05  Score=66.17  Aligned_cols=108  Identities=12%  Similarity=0.116  Sum_probs=71.2

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEccC
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT~  115 (163)
                      -||+++| +|.||..+++.+. ..++++. ++|++.  .....+.    +.|..+.+++.++..      +.|+||-+-.
T Consensus         6 ~kIgfIG-LG~MG~~mA~~L~-~~G~~V~-v~dr~~--~~~~~l~----~~G~~~~~s~~e~~~------~~dvvi~~l~   70 (297)
T 4gbj_A            6 EKIAFLG-LGNLGTPIAEILL-EAGYELV-VWNRTA--SKAEPLT----KLGATVVENAIDAIT------PGGIVFSVLA   70 (297)
T ss_dssp             CEEEEEC-CSTTHHHHHHHHH-HTTCEEE-EC---------CTTT----TTTCEECSSGGGGCC------TTCEEEECCS
T ss_pred             CcEEEEe-cHHHHHHHHHHHH-HCCCeEE-EEeCCH--HHHHHHH----HcCCeEeCCHHHHHh------cCCceeeecc
Confidence            4899999 8999999999998 4689987 467543  1222332    457778889999874      8999884433


Q ss_pred             chhH-HH----HHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeEE
Q 031216          116 ASTV-YD----NVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVS  159 (163)
Q Consensus       116 p~~~-~~----~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv~  159 (163)
                      +... .+    .+...+..|. +++-.+..++++..++.+.+++.++-|
T Consensus        71 ~~~~~~~v~~~~~~~~~~~~~-iiid~sT~~p~~~~~~~~~~~~~g~~~  118 (297)
T 4gbj_A           71 DDAAVEELFSMELVEKLGKDG-VHVSMSTISPETSRQLAQVHEWYGAHY  118 (297)
T ss_dssp             SHHHHHHHSCHHHHHHHCTTC-EEEECSCCCHHHHHHHHHHHHHTTCEE
T ss_pred             chhhHHHHHHHHHHhhcCCCe-EEEECCCCChHHHHHHHHHHHhcCCce
Confidence            3222 22    2334445554 445455567888999999988887765

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=98.21  E-value=8.5e-06  Score=65.90  Aligned_cols=107  Identities=15%  Similarity=0.091  Sum_probs=68.2

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEccC
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT~  115 (163)
                      +||+|+| +|.||+.+++.+.+ .+.++ .++|+..  .....+.    ..++.++.++++++.      ++|+||.++.
T Consensus         6 m~i~iiG-~G~~G~~~a~~l~~-~g~~V-~~~~~~~--~~~~~~~----~~g~~~~~~~~~~~~------~~D~vi~~v~   70 (299)
T 1vpd_A            6 MKVGFIG-LGIMGKPMSKNLLK-AGYSL-VVSDRNP--EAIADVI----AAGAETASTAKAIAE------QCDVIITMLP   70 (299)
T ss_dssp             CEEEEEC-CSTTHHHHHHHHHH-TTCEE-EEECSCH--HHHHHHH----HTTCEECSSHHHHHH------HCSEEEECCS
T ss_pred             ceEEEEC-chHHHHHHHHHHHh-CCCEE-EEEeCCH--HHHHHHH----HCCCeecCCHHHHHh------CCCEEEEECC
Confidence            6999999 69999999999875 47786 4667542  1222222    235667789998875      7999996665


Q ss_pred             chhH-HHHH------HHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeE
Q 031216          116 ASTV-YDNV------KQATAFGMRSVVYVPHIQLETVSALSAFCDKASMV  158 (163)
Q Consensus       116 p~~~-~~~~------~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv  158 (163)
                      .... ...+      ...+..|..+|.-.++. +...++|.+...+.++.
T Consensus        71 ~~~~~~~~~~~~~~l~~~l~~~~~vv~~s~~~-~~~~~~l~~~~~~~g~~  119 (299)
T 1vpd_A           71 NSPHVKEVALGENGIIEGAKPGTVLIDMSSIA-PLASREISDALKAKGVE  119 (299)
T ss_dssp             SHHHHHHHHHSTTCHHHHCCTTCEEEECSCCC-HHHHHHHHHHHHTTTCE
T ss_pred             CHHHHHHHHhCcchHhhcCCCCCEEEECCCCC-HHHHHHHHHHHHHcCCe
Confidence            2333 3333      23455677665544444 45556677766655543

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=98.19  E-value=1.2e-05  Score=66.16  Aligned_cols=113  Identities=12%  Similarity=0.065  Sum_probs=71.7

Q ss_pred             CCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEE
Q 031216           31 PPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVV  110 (163)
Q Consensus        31 ~~~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVV  110 (163)
                      +..+++||+|+| +|.||+.+++.+.+ .+.++. ++|++.  .....+.    ..++..++++++++.      .+|+|
T Consensus         5 ~~~~~~~IgiIG-~G~mG~~~A~~l~~-~G~~V~-~~dr~~--~~~~~~~----~~g~~~~~~~~e~~~------~aDvV   69 (306)
T 3l6d_A            5 DESFEFDVSVIG-LGAMGTIMAQVLLK-QGKRVA-IWNRSP--GKAAALV----AAGAHLCESVKAALS------ASPAT   69 (306)
T ss_dssp             CCCCSCSEEEEC-CSHHHHHHHHHHHH-TTCCEE-EECSSH--HHHHHHH----HHTCEECSSHHHHHH------HSSEE
T ss_pred             cccCCCeEEEEC-CCHHHHHHHHHHHH-CCCEEE-EEeCCH--HHHHHHH----HCCCeecCCHHHHHh------cCCEE
Confidence            344578999999 69999999999874 578876 457542  1222222    235666789999885      78999


Q ss_pred             EEccCchh-HHHHHH----HHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeEE
Q 031216          111 IDFTDAST-VYDNVK----QATAFGMRSVVYVPHIQLETVSALSAFCDKASMVS  159 (163)
Q Consensus       111 IDfT~p~~-~~~~~~----~al~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv~  159 (163)
                      |.+..+.. ..+.+.    ..+..|.-+|. ++..+++...++.+..++.++-|
T Consensus        70 i~~vp~~~~~~~v~~~~~l~~~~~g~ivid-~st~~~~~~~~l~~~~~~~g~~~  122 (306)
T 3l6d_A           70 IFVLLDNHATHEVLGMPGVARALAHRTIVD-YTTNAQDEGLALQGLVNQAGGHY  122 (306)
T ss_dssp             EECCSSHHHHHHHHTSTTHHHHTTTCEEEE-CCCCCTTHHHHHHHHHHHTTCEE
T ss_pred             EEEeCCHHHHHHHhcccchhhccCCCEEEE-CCCCCHHHHHHHHHHHHHcCCeE
Confidence            96554333 333221    23445655544 55555666677777766655433

>1gr0_A Inositol-3-phosphate synthase; isomerase, oxidoreductase, PSI, protein structure initiative, TB structural genomics consortium, TB; HET: NAD; 1.95A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3

Probab=98.18  E-value=3.3e-05  Score=66.10  Aligned_cols=125  Identities=17%  Similarity=0.141  Sum_probs=83.3

Q ss_pred             CCCCeeEEEEcCCCHHHHHHHHHHHhcC----------------------CcEEEEEEec--CCCCcchhhhc-------
Q 031216           32 PQSNIKVIINGAVKEIGRAAVIAVTKAR----------------------GMEVAGAIDS--HSVGEDIGMVC-------   80 (163)
Q Consensus        32 ~~~~irV~VvGa~G~mG~~i~~~i~~~~----------------------~~eLvgvid~--~~~g~~~~~l~-------   80 (163)
                      .+.++||+|+|. |+.|+.++.-+...+                      +++++++.|.  ...|+++.+..       
T Consensus        12 ~~~~~rVaIVGv-GN~GsaLv~Gi~~yk~~~~~~~~~Gl~~~~~g~~~~~Di~iVaafDId~~KVG~~l~~A~~~~~n~~   90 (367)
T 1gr0_A           12 ASTEVRVAIVGV-GNCASSLVQGVEYYYNADDTSTVPGLMHVRFGPYHVRDVKFVAAFDVDAKKVGFDLSDAIFASENNT   90 (367)
T ss_dssp             --CCEEEEEECC-SHHHHHHHHHHHHTTTCCTTSCCTTCSCSEETTEEGGGEEEEEEEECBTTTTTSBHHHHTTSTTCCC
T ss_pred             hccCCCEEEECc-ChHHHHHHHHHHHHhccCcccccCCccccccCCccCCCeEEEEEEcCChHHHHHHhhCCEecCCCch
Confidence            446899999996 999999999655444                      7899999993  33454432211       


Q ss_pred             ----cCC----------CCCCcc------------eeCCHHHHHhcccccCCccEEEEccC---chhHHHHHHHHHHcCC
Q 031216           81 ----DME----------QPLEIP------------VMSDLTMVLGSISQSKARAVVIDFTD---ASTVYDNVKQATAFGM  131 (163)
Q Consensus        81 ----g~~----------~~~gi~------------v~~~l~ell~~~~~~~~~DVVIDfT~---p~~~~~~~~~al~~G~  131 (163)
                          .++          ...++.            +..|+.+.+.+    .+.||||..-.   -....-|+.+|++.|+
T Consensus        91 ~~~~~v~~~~v~v~~g~~ldgia~~~~~~i~~s~~~~~Di~~~~~~----~~~dVvV~~lp~gs~~aS~~YA~Aal~ag~  166 (367)
T 1gr0_A           91 IKIADVAPTNVIVQRGPTLDGIGKYYADTIELSDAEPVDVVQALKE----AKVDVLVSYLPVGSEEADKFYAQCAIDAGV  166 (367)
T ss_dssp             CCCSCCCCCCCBCEECCCTTSCCHHHHTTSCBCSSCCCCHHHHHHH----TTCSEEEECCCTTCHHHHHHHHHHHHHHTC
T ss_pred             hhhhcccccCceEccCCCCCchhhhhhhccccccchhhHHHHHHHH----hCCcEEEEeeeCCCcCHHHHHHHHHHHcCC
Confidence                000          000111            12255566654    78999887642   1233568889999999


Q ss_pred             cEEEeCCCCCHHHHHHHHHHhhhcCeEEcCC
Q 031216          132 RSVVYVPHIQLETVSALSAFCDKASMVSTGS  162 (163)
Q Consensus       132 ~vVigttg~~~e~~~~L~~~A~~~~Vv~tg~  162 (163)
                      +.|-++|.+... .+.+.+++++.++...|-
T Consensus       167 ~fvN~~P~~~~~-~P~~~el~~~~g~pi~Gd  196 (367)
T 1gr0_A          167 AFVNALPVFIAS-DPVWAKKFTDARVPIVGD  196 (367)
T ss_dssp             EEEECSSCCSTT-SHHHHHHHHHHTCEEEES
T ss_pred             ceEecCCccccC-CHHHHHHHHHcCCCEecc
Confidence            999999976543 366889999999888763

>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}

Probab=98.17  E-value=1.6e-05  Score=57.56  Aligned_cols=90  Identities=12%  Similarity=0.132  Sum_probs=63.3

Q ss_pred             CCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeC--CHHHHHhcccccCCccEE
Q 031216           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS--DLTMVLGSISQSKARAVV  110 (163)
Q Consensus        33 ~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~--~l~ell~~~~~~~~~DVV  110 (163)
                      +++.|++|+| .|..|+.+++.+.+.++++++|++|....  ..+..     -.|++++.  ++.+.+..    ..+|.|
T Consensus         2 ~~~~~vlIiG-aG~~g~~l~~~l~~~~g~~vvg~~d~~~~--~~g~~-----i~g~pV~g~~~l~~~~~~----~~id~v   69 (141)
T 3nkl_A            2 NAKKKVLIYG-AGSAGLQLANMLRQGKEFHPIAFIDDDRK--KHKTT-----MQGITIYRPKYLERLIKK----HCISTV   69 (141)
T ss_dssp             -CCEEEEEEC-CSHHHHHHHHHHHHSSSEEEEEEECSCGG--GTTCE-----ETTEEEECGGGHHHHHHH----HTCCEE
T ss_pred             CCCCEEEEEC-CCHHHHHHHHHHHhCCCcEEEEEEECCcc--cCCCE-----ecCeEEECHHHHHHHHHH----CCCCEE
Confidence            3457999999 59999999999998889999999995421  11111     23667764  45555543    578987


Q ss_pred             EEccCch----hHHHHHHHHHHcCCcEEE
Q 031216          111 IDFTDAS----TVYDNVKQATAFGMRSVV  135 (163)
Q Consensus       111 IDfT~p~----~~~~~~~~al~~G~~vVi  135 (163)
                      + ++.|.    ...+.+..+.+.|+++.+
T Consensus        70 i-ia~~~~~~~~~~~i~~~l~~~gv~v~~   97 (141)
T 3nkl_A           70 L-LAVPSASQVQKKVIIESLAKLHVEVLT   97 (141)
T ss_dssp             E-ECCTTSCHHHHHHHHHHHHTTTCEEEE
T ss_pred             E-EeCCCCCHHHHHHHHHHHHHcCCeEEE
Confidence            7 44442    225777889999999876

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=98.17  E-value=1.2e-05  Score=70.51  Aligned_cols=111  Identities=16%  Similarity=0.143  Sum_probs=73.4

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcce----eC---CHHHHHhcccccCC
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV----MS---DLTMVLGSISQSKA  106 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v----~~---~l~ell~~~~~~~~  106 (163)
                      ++.||+|+|+ |.+|+.+++.+.+.++.+++ +++++.  .++.++..   ..++..    +.   ++++++.      +
T Consensus        22 ~~k~VlIiGA-GgiG~aia~~L~~~~g~~V~-v~~R~~--~ka~~la~---~~~~~~~~~D~~d~~~l~~~l~------~   88 (467)
T 2axq_A           22 MGKNVLLLGS-GFVAQPVIDTLAANDDINVT-VACRTL--ANAQALAK---PSGSKAISLDVTDDSALDKVLA------D   88 (467)
T ss_dssp             -CEEEEEECC-STTHHHHHHHHHTSTTEEEE-EEESSH--HHHHHHHG---GGTCEEEECCTTCHHHHHHHHH------T
T ss_pred             CCCEEEEECC-hHHHHHHHHHHHhCCCCeEE-EEECCH--HHHHHHHH---hcCCcEEEEecCCHHHHHHHHc------C
Confidence            4578999996 99999999999987788854 566542  12222221   111111    12   3445553      8


Q ss_pred             ccEEEEccCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeEE
Q 031216          107 RAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVS  159 (163)
Q Consensus       107 ~DVVIDfT~p~~~~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv~  159 (163)
                      +|+||.++.+.........|++.|++++. ...++++ ...|.+.|++.|+..
T Consensus        89 ~DvVIn~tp~~~~~~v~~a~l~~g~~vvd-~~~~~p~-~~~Ll~~Ak~aGv~~  139 (467)
T 2axq_A           89 NDVVISLIPYTFHPNVVKSAIRTKTDVVT-SSYISPA-LRELEPEIVKAGITV  139 (467)
T ss_dssp             SSEEEECSCGGGHHHHHHHHHHHTCEEEE-CSCCCHH-HHHHHHHHHHHTCEE
T ss_pred             CCEEEECCchhhhHHHHHHHHhcCCEEEE-eecCCHH-HHHHHHHHHHcCCEE
Confidence            99999888766566778899999999876 3333444 467777888877644

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=98.15  E-value=1e-05  Score=65.56  Aligned_cols=109  Identities=14%  Similarity=0.113  Sum_probs=70.4

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT  114 (163)
                      |+||+|+| +|.||+.+++.+.+. +.++. ++|++.  .....+.    ..++..++++++++.      +.|+||.+.
T Consensus         1 M~~I~iiG-~G~mG~~~a~~l~~~-G~~V~-~~dr~~--~~~~~~~----~~g~~~~~~~~~~~~------~advvi~~v   65 (287)
T 3pdu_A            1 MTTYGFLG-LGIMGGPMAANLVRA-GFDVT-VWNRNP--AKCAPLV----ALGARQASSPAEVCA------ACDITIAML   65 (287)
T ss_dssp             CCCEEEEC-CSTTHHHHHHHHHHH-TCCEE-EECSSG--GGGHHHH----HHTCEECSCHHHHHH------HCSEEEECC
T ss_pred             CCeEEEEc-cCHHHHHHHHHHHHC-CCeEE-EEcCCH--HHHHHHH----HCCCeecCCHHHHHH------cCCEEEEEc
Confidence            57999999 699999999998854 67766 457543  1222322    235667789999885      789999655


Q ss_pred             Cch-hHHHHH---H---HHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeEE
Q 031216          115 DAS-TVYDNV---K---QATAFGMRSVVYVPHIQLETVSALSAFCDKASMVS  159 (163)
Q Consensus       115 ~p~-~~~~~~---~---~al~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv~  159 (163)
                      .+. ...+.+   .   ..+..|..+ +-++..++....++.+..++.++-|
T Consensus        66 ~~~~~~~~v~~~~~~l~~~l~~g~~v-v~~st~~~~~~~~~~~~~~~~g~~~  116 (287)
T 3pdu_A           66 ADPAAAREVCFGANGVLEGIGGGRGY-IDMSTVDDETSTAIGAAVTARGGRF  116 (287)
T ss_dssp             SSHHHHHHHHHSTTCGGGTCCTTCEE-EECSCCCHHHHHHHHHHHHHTTCEE
T ss_pred             CCHHHHHHHHcCchhhhhcccCCCEE-EECCCCCHHHHHHHHHHHHHcCCEE
Confidence            443 333333   1   223445544 4455566777777777776665543

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=98.15  E-value=1.4e-05  Score=63.56  Aligned_cols=105  Identities=18%  Similarity=0.155  Sum_probs=68.6

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEccC
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT~  115 (163)
                      +||+|+| .|.||..+++.+.+ .+.++.. .|+.........+.    ..++.  +++++++.      ++|+||.+..
T Consensus         1 M~I~iIG-~G~mG~~la~~l~~-~g~~V~~-~~~~~~~~~~~~~~----~~g~~--~~~~~~~~------~aDvvi~~v~   65 (264)
T 1i36_A            1 LRVGFIG-FGEVAQTLASRLRS-RGVEVVT-SLEGRSPSTIERAR----TVGVT--ETSEEDVY------SCPVVISAVT   65 (264)
T ss_dssp             CEEEEES-CSHHHHHHHHHHHH-TTCEEEE-CCTTCCHHHHHHHH----HHTCE--ECCHHHHH------TSSEEEECSC
T ss_pred             CeEEEEe-chHHHHHHHHHHHH-CCCeEEE-eCCccCHHHHHHHH----HCCCc--CCHHHHHh------cCCEEEEECC
Confidence            4899999 69999999999875 5788776 45421111122221    12333  67778775      8999997776


Q ss_pred             chhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhc
Q 031216          116 ASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKA  155 (163)
Q Consensus       116 p~~~~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~~  155 (163)
                      |....+.+......-.++|+-.++.+.+..++|.+...+.
T Consensus        66 ~~~~~~~~~~~~~~~~~~vi~~s~~~~~~~~~l~~~~~~~  105 (264)
T 1i36_A           66 PGVALGAARRAGRHVRGIYVDINNISPETVRMASSLIEKG  105 (264)
T ss_dssp             GGGHHHHHHHHHTTCCSEEEECSCCCHHHHHHHHHHCSSS
T ss_pred             CHHHHHHHHHHHHhcCcEEEEccCCCHHHHHHHHHHHhhC
Confidence            6656555554444333377767777777777888777654

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=98.10  E-value=4.7e-05  Score=62.23  Aligned_cols=108  Identities=12%  Similarity=0.034  Sum_probs=69.2

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT  114 (163)
                      ++||+|+| +|+||+.+++.+.+ .+.++. ++|++..  ....+.    ..++..+++++++.      . +|+||.+.
T Consensus        15 ~~~I~vIG-~G~mG~~~A~~l~~-~G~~V~-~~dr~~~--~~~~~~----~~g~~~~~~~~~~~------~-aDvvi~~v   78 (296)
T 3qha_A           15 QLKLGYIG-LGNMGAPMATRMTE-WPGGVT-VYDIRIE--AMTPLA----EAGATLADSVADVA------A-ADLIHITV   78 (296)
T ss_dssp             CCCEEEEC-CSTTHHHHHHHHTT-STTCEE-EECSSTT--TSHHHH----HTTCEECSSHHHHT------T-SSEEEECC
T ss_pred             CCeEEEEC-cCHHHHHHHHHHHH-CCCeEE-EEeCCHH--HHHHHH----HCCCEEcCCHHHHH------h-CCEEEEEC
Confidence            46899999 69999999999874 578876 4575431  222332    34667788999986      5 99999555


Q ss_pred             C-chhHHHHHHHH---HHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeEE
Q 031216          115 D-ASTVYDNVKQA---TAFGMRSVVYVPHIQLETVSALSAFCDKASMVS  159 (163)
Q Consensus       115 ~-p~~~~~~~~~a---l~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv~  159 (163)
                      . |....+.+...   ++.|..+ +-++...+...+++.+..++.++.+
T Consensus        79 p~~~~~~~v~~~l~~~l~~g~iv-v~~st~~~~~~~~~~~~~~~~g~~~  126 (296)
T 3qha_A           79 LDDAQVREVVGELAGHAKPGTVI-AIHSTISDTTAVELARDLKARDIHI  126 (296)
T ss_dssp             SSHHHHHHHHHHHHTTCCTTCEE-EECSCCCHHHHHHHHHHHGGGTCEE
T ss_pred             CChHHHHHHHHHHHHhcCCCCEE-EEeCCCCHHHHHHHHHHHHHcCCEE
Confidence            4 22333444333   3345444 4455556777777877776666543

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=98.10  E-value=3.4e-05  Score=62.91  Aligned_cols=108  Identities=8%  Similarity=0.115  Sum_probs=68.4

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCc---EEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEE
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGM---EVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI  111 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~---eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVI  111 (163)
                      ++||+|+| +|+||+.+++.+.+. +.   ++. ++|++.  .....+..   .+++.++.+..+++.      ++|+||
T Consensus         3 ~~~I~iIG-~G~mG~aia~~l~~~-g~~~~~V~-v~dr~~--~~~~~l~~---~~gi~~~~~~~~~~~------~aDvVi   68 (280)
T 3tri_A            3 TSNITFIG-GGNMARNIVVGLIAN-GYDPNRIC-VTNRSL--DKLDFFKE---KCGVHTTQDNRQGAL------NADVVV   68 (280)
T ss_dssp             CSCEEEES-CSHHHHHHHHHHHHT-TCCGGGEE-EECSSS--HHHHHHHH---TTCCEEESCHHHHHS------SCSEEE
T ss_pred             CCEEEEEc-ccHHHHHHHHHHHHC-CCCCCeEE-EEeCCH--HHHHHHHH---HcCCEEeCChHHHHh------cCCeEE
Confidence            47899999 599999999998854 44   444 667543  22333321   357778889888874      899999


Q ss_pred             EccCchhHHHHHHHH----HHcCCcEEEeCCCCCHHHHHHHHHHhhh-cCeEE
Q 031216          112 DFTDASTVYDNVKQA----TAFGMRSVVYVPHIQLETVSALSAFCDK-ASMVS  159 (163)
Q Consensus       112 DfT~p~~~~~~~~~a----l~~G~~vVigttg~~~e~~~~L~~~A~~-~~Vv~  159 (163)
                      .+..|....+.+...    +..+.-+|.-+.|++.++   |.+.... .+++.
T Consensus        69 lav~p~~~~~vl~~l~~~~l~~~~iiiS~~agi~~~~---l~~~l~~~~~vvr  118 (280)
T 3tri_A           69 LAVKPHQIKMVCEELKDILSETKILVISLAVGVTTPL---IEKWLGKASRIVR  118 (280)
T ss_dssp             ECSCGGGHHHHHHHHHHHHHTTTCEEEECCTTCCHHH---HHHHHTCCSSEEE
T ss_pred             EEeCHHHHHHHHHHHHhhccCCCeEEEEecCCCCHHH---HHHHcCCCCeEEE
Confidence            888777665555443    333334444345787655   4443332 44554

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=98.07  E-value=2.1e-05  Score=63.11  Aligned_cols=107  Identities=11%  Similarity=-0.023  Sum_probs=63.9

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT  114 (163)
                      |+||+|+| .|.||+.+++.+.+  +.++. ++|+..  .....+.    ..++.+++ +++++.      ++|+||.++
T Consensus         1 M~~i~iiG-~G~~G~~~a~~l~~--g~~V~-~~~~~~--~~~~~~~----~~g~~~~~-~~~~~~------~~D~vi~~v   63 (289)
T 2cvz_A            1 MEKVAFIG-LGAMGYPMAGHLAR--RFPTL-VWNRTF--EKALRHQ----EEFGSEAV-PLERVA------EARVIFTCL   63 (289)
T ss_dssp             -CCEEEEC-CSTTHHHHHHHHHT--TSCEE-EECSST--HHHHHHH----HHHCCEEC-CGGGGG------GCSEEEECC
T ss_pred             CCeEEEEc-ccHHHHHHHHHHhC--CCeEE-EEeCCH--HHHHHHH----HCCCcccC-HHHHHh------CCCEEEEeC
Confidence            57899999 69999999999885  88865 567542  1222221    11344455 666653      799999666


Q ss_pred             Cchh-HHHHHHH---HHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeEE
Q 031216          115 DAST-VYDNVKQ---ATAFGMRSVVYVPHIQLETVSALSAFCDKASMVS  159 (163)
Q Consensus       115 ~p~~-~~~~~~~---al~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv~  159 (163)
                      .+.. ..+.+..   .++.|..+|. .+.......++|.+..++.++.+
T Consensus        64 ~~~~~~~~v~~~l~~~l~~~~~vv~-~s~~~~~~~~~l~~~~~~~g~~~  111 (289)
T 2cvz_A           64 PTTREVYEVAEALYPYLREGTYWVD-ATSGEPEASRRLAERLREKGVTY  111 (289)
T ss_dssp             SSHHHHHHHHHHHTTTCCTTEEEEE-CSCCCHHHHHHHHHHHHTTTEEE
T ss_pred             CChHHHHHHHHHHHhhCCCCCEEEE-CCCCCHHHHHHHHHHHHHcCCEE
Confidence            5444 3333332   2334555554 33344555667777766555433

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=98.05  E-value=1.9e-05  Score=64.65  Aligned_cols=109  Identities=12%  Similarity=0.097  Sum_probs=68.7

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcce-eCCHHHHHhcccccCCccEEEE
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDLTMVLGSISQSKARAVVID  112 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v-~~~l~ell~~~~~~~~~DVVID  112 (163)
                      +++||+|+| +|.||..+++.+.+ .+.++. ++|++.  .....+.    ..+... ++++++++.      .+|+||.
T Consensus         6 ~~~~I~iIG-~G~mG~~~a~~l~~-~G~~V~-~~dr~~--~~~~~~~----~~g~~~~~~~~~e~~~------~aDvvi~   70 (303)
T 3g0o_A            6 TDFHVGIVG-LGSMGMGAARSCLR-AGLSTW-GADLNP--QACANLL----AEGACGAAASAREFAG------VVDALVI   70 (303)
T ss_dssp             -CCEEEEEC-CSHHHHHHHHHHHH-TTCEEE-EECSCH--HHHHHHH----HTTCSEEESSSTTTTT------TCSEEEE
T ss_pred             CCCeEEEEC-CCHHHHHHHHHHHH-CCCeEE-EEECCH--HHHHHHH----HcCCccccCCHHHHHh------cCCEEEE
Confidence            457999999 69999999999874 578876 457542  1222222    234444 788888774      8999995


Q ss_pred             ccCchhHHHHHH-------HHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeE
Q 031216          113 FTDASTVYDNVK-------QATAFGMRSVVYVPHIQLETVSALSAFCDKASMV  158 (163)
Q Consensus       113 fT~p~~~~~~~~-------~al~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv  158 (163)
                      +..+....+.+.       ..++.|.-+|. ++..++....++.+..++.++.
T Consensus        71 ~vp~~~~~~~v~~~~~~l~~~l~~g~ivv~-~st~~~~~~~~~~~~~~~~g~~  122 (303)
T 3g0o_A           71 LVVNAAQVRQVLFGEDGVAHLMKPGSAVMV-SSTISSADAQEIAAALTALNLN  122 (303)
T ss_dssp             CCSSHHHHHHHHC--CCCGGGSCTTCEEEE-CSCCCHHHHHHHHHHHHTTTCE
T ss_pred             ECCCHHHHHHHHhChhhHHhhCCCCCEEEe-cCCCCHHHHHHHHHHHHHcCCe
Confidence            554433333332       23445555544 5556677777777776665553

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=98.03  E-value=8.7e-06  Score=64.71  Aligned_cols=98  Identities=9%  Similarity=0.122  Sum_probs=63.4

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCc----EEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEE
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGM----EVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVV  110 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~----eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVV  110 (163)
                      ++||+|+| +|+||+.+++.+.+ .+.    ++. ++|++.  .....+..   ..++.+++++++++.      ++|+|
T Consensus         2 ~~~i~iIG-~G~mG~~~a~~l~~-~g~~~~~~V~-~~~r~~--~~~~~~~~---~~g~~~~~~~~e~~~------~aDvV   67 (247)
T 3gt0_A            2 DKQIGFIG-CGNMGMAMIGGMIN-KNIVSSNQII-CSDLNT--ANLKNASE---KYGLTTTTDNNEVAK------NADIL   67 (247)
T ss_dssp             CCCEEEEC-CSHHHHHHHHHHHH-TTSSCGGGEE-EECSCH--HHHHHHHH---HHCCEECSCHHHHHH------HCSEE
T ss_pred             CCeEEEEC-ccHHHHHHHHHHHh-CCCCCCCeEE-EEeCCH--HHHHHHHH---HhCCEEeCChHHHHH------hCCEE
Confidence            47999999 69999999999875 454    554 567542  12222221   236677889999885      79999


Q ss_pred             EEccCchhHHHHHHHH---HHcCCcEEEeCCCCCHHHHH
Q 031216          111 IDFTDASTVYDNVKQA---TAFGMRSVVYVPHIQLETVS  146 (163)
Q Consensus       111 IDfT~p~~~~~~~~~a---l~~G~~vVigttg~~~e~~~  146 (163)
                      |.++.|....+.+...   +..|..+|.-..+.+.+..+
T Consensus        68 ilav~~~~~~~v~~~l~~~l~~~~~vvs~~~gi~~~~l~  106 (247)
T 3gt0_A           68 ILSIKPDLYASIINEIKEIIKNDAIIVTIAAGKSIESTE  106 (247)
T ss_dssp             EECSCTTTHHHHC---CCSSCTTCEEEECSCCSCHHHHH
T ss_pred             EEEeCHHHHHHHHHHHHhhcCCCCEEEEecCCCCHHHHH
Confidence            9777666666555433   23455555555678766543

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=97.99  E-value=9.5e-05  Score=64.50  Aligned_cols=136  Identities=18%  Similarity=0.203  Sum_probs=69.6

Q ss_pred             ccccccccccceeeeccCCCCC-----CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhcc-CC--
Q 031216           12 MHHISQNVKAKRFISCSTNPPQ-----SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCD-ME--   83 (163)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~-----~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g-~~--   83 (163)
                      -||-|--|....-+--++-.++     .++||+|+| +|+||..++..+.+  +.++++ +|+..  ..+..+.. ..  
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~mkIaVIG-lG~mG~~lA~~La~--G~~V~~-~D~~~--~~v~~l~~g~~~i   81 (432)
T 3pid_A            8 HHHSSGLVPRGSHMASMTGGQQMGRGSEFMKITISG-TGYVGLSNGVLIAQ--NHEVVA-LDIVQ--AKVDMLNQKISPI   81 (432)
T ss_dssp             ---------------------------CCCEEEEEC-CSHHHHHHHHHHHT--TSEEEE-ECSCH--HHHHHHHTTCCSS
T ss_pred             ccccCCcccccchhhhccCCcccccccCCCEEEEEC-cCHHHHHHHHHHHc--CCeEEE-EecCH--HHhhHHhccCCcc
Confidence            3455544444444433333333     357999999 69999999998874  899885 67431  11111110 00  


Q ss_pred             -----------CCCCcceeCCHHHHHhcccccCCccEEEEccCch-----------hHH---HHHHHHHHcCCcEEEeCC
Q 031216           84 -----------QPLEIPVMSDLTMVLGSISQSKARAVVIDFTDAS-----------TVY---DNVKQATAFGMRSVVYVP  138 (163)
Q Consensus        84 -----------~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT~p~-----------~~~---~~~~~al~~G~~vVigtt  138 (163)
                                 ...++..++|+++++.      .+|+||.++...           .+.   +.+.. ++.|.-||..+ 
T Consensus        82 ~e~~l~~ll~~~~~~l~~ttd~~ea~~------~aDvViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~-l~~g~iVV~~S-  153 (432)
T 3pid_A           82 VDKEIQEYLAEKPLNFRATTDKHDAYR------NADYVIIATPTDYDPKTNYFNTSTVEAVIRDVTE-INPNAVMIIKS-  153 (432)
T ss_dssp             CCHHHHHHHHHSCCCEEEESCHHHHHT------TCSEEEECCCCEEETTTTEEECHHHHHHHHHHHH-HCTTSEEEECS-
T ss_pred             ccccHHHHHhhccCCeEEEcCHHHHHh------CCCEEEEeCCCccccccccccHHHHHHHHHHHHh-cCCCcEEEEeC-
Confidence                       0124667789988875      899999665221           122   22233 56676665544 


Q ss_pred             CCCHHHHHHHHHHhhhcCeEEcC
Q 031216          139 HIQLETVSALSAFCDKASMVSTG  161 (163)
Q Consensus       139 g~~~e~~~~L~~~A~~~~Vv~tg  161 (163)
                      ...+...+++.+...+.++++++
T Consensus       154 Tv~pgtt~~l~~~l~~~~v~~sP  176 (432)
T 3pid_A          154 TIPVGFTRDIKERLGIDNVIFSP  176 (432)
T ss_dssp             CCCTTHHHHHHHHHTCCCEEECC
T ss_pred             CCChHHHHHHHHHHhhccEeecC
Confidence            44455556666666667887754

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=97.98  E-value=1.9e-05  Score=60.69  Aligned_cols=96  Identities=10%  Similarity=0.035  Sum_probs=58.2

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC-CcchhhhccCC-CCCCcceeCCHHHHHhcccccCCccEEEEc
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-GEDIGMVCDME-QPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~-g~~~~~l~g~~-~~~gi~v~~~l~ell~~~~~~~~~DVVIDf  113 (163)
                      +||+|+|++|+||+.+++.+.+ .+.++.. ++++.. .+...+..+.. ...++. ++++++++.      ++|+||.+
T Consensus         1 m~i~iiGa~G~~G~~ia~~l~~-~g~~V~~-~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~------~~D~Vi~~   71 (212)
T 1jay_A            1 MRVALLGGTGNLGKGLALRLAT-LGHEIVV-GSRREEKAEAKAAEYRRIAGDASIT-GMKNEDAAE------ACDIAVLT   71 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHT-TTCEEEE-EESSHHHHHHHHHHHHHHHSSCCEE-EEEHHHHHH------HCSEEEEC
T ss_pred             CeEEEEcCCCHHHHHHHHHHHH-CCCEEEE-EeCCHHHHHHHHHHhccccccCCCC-hhhHHHHHh------cCCEEEEe
Confidence            4899999779999999999875 5778764 564321 01111101100 001233 467878775      79999987


Q ss_pred             cCchhHHHHHHH---HHHcCCcEEEeCCCCC
Q 031216          114 TDASTVYDNVKQ---ATAFGMRSVVYVPHIQ  141 (163)
Q Consensus       114 T~p~~~~~~~~~---al~~G~~vVigttg~~  141 (163)
                      +.|....+.+..   .+ .+..+|.-++|++
T Consensus        72 ~~~~~~~~~~~~l~~~~-~~~~vi~~~~g~~  101 (212)
T 1jay_A           72 IPWEHAIDTARDLKNIL-REKIVVSPLVPVS  101 (212)
T ss_dssp             SCHHHHHHHHHHTHHHH-TTSEEEECCCCEE
T ss_pred             CChhhHHHHHHHHHHHc-CCCEEEEcCCCcC
Confidence            776665544432   33 4776776666665

>1obf_O Glyceraldehyde 3-phosphate dehydrogenase; glycolytic pathway, oxidoreductase, free-NAD GAPDH; HET: PG4; 1.7A {Achromobacter xylosoxidans} SCOP: c.2.1.3 d.81.1.1 PDB: 3gnq_A*

Probab=97.98  E-value=2.3e-05  Score=66.39  Aligned_cols=96  Identities=21%  Similarity=0.199  Sum_probs=62.5

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhc---CCcEEEEEEec-------------CCCCcchhh------hccCCCCCCccee-
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKA---RGMEVAGAIDS-------------HSVGEDIGM------VCDMEQPLEIPVM-   91 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~---~~~eLvgvid~-------------~~~g~~~~~------l~g~~~~~gi~v~-   91 (163)
                      |+||+|.|+ |++||.++|.+.++   ++++++++-|.             +..|+-.++      -+-.. ...+.++ 
T Consensus         1 ~ikVaInGf-GrIGr~v~r~l~~~~~~~~~evvaInd~~~~~~~a~ll~ydS~hg~f~~~v~~~~~~l~v~-g~~i~v~~   78 (335)
T 1obf_O            1 TIRVAINGY-GRIGRNILRAHYEGGKSHDIEIVAINDLGDPKTNAHLTRYDTAHGKFPGTVSVNGSYMVVN-GDKIRVDA   78 (335)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHHTTSCSSEEEEEEECSSCHHHHHHHHHEETTTEECSSCEEEETTEEEET-TEEEEEEC
T ss_pred             CcEEEEECC-CHHHHHHHHHHHhcCCCCCcEEEEEeCCCCHHHHHHHhccCCcCCCCCCCEEEeCCEEEEC-CEEEEEEE
Confidence            489999995 99999999999888   89999999883             111110000      00000 1234444 


Q ss_pred             -CCHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCc-EEE
Q 031216           92 -SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMR-SVV  135 (163)
Q Consensus        92 -~~l~ell~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~-vVi  135 (163)
                       .+++++-..   +..+|+|+++|-.....+.+...++.|.. ||+
T Consensus        79 ~~dp~~~~w~---~~gvDiV~estG~f~s~e~a~~h~~aGakkVvi  121 (335)
T 1obf_O           79 NRNPAQLPWG---ALKVDVVLECTGFFTTKEKAGAHIKGGAKKVII  121 (335)
T ss_dssp             CSCGGGSCTT---TTTCSEEEECSSSCCSHHHHHHHHHHTCSEEEE
T ss_pred             cCCcccCCcc---ccCCCEEEEccCccccHHHHHHHHHcCCCEEEE
Confidence             255554321   24899999877666667888888888865 555

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=97.97  E-value=4e-05  Score=66.80  Aligned_cols=109  Identities=14%  Similarity=0.122  Sum_probs=70.3

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCC-Ccce----eC---CHHHHHhcccccCC
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPL-EIPV----MS---DLTMVLGSISQSKA  106 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~-gi~v----~~---~l~ell~~~~~~~~  106 (163)
                      +.||+|+| +|.||+.+++.+.+ .+.++ .+++++.  .++.++..   .. ++..    ..   ++++++.      +
T Consensus         3 ~k~VlViG-aG~iG~~ia~~L~~-~G~~V-~v~~R~~--~~a~~la~---~~~~~~~~~~Dv~d~~~l~~~l~------~   68 (450)
T 1ff9_A            3 TKSVLMLG-SGFVTRPTLDVLTD-SGIKV-TVACRTL--ESAKKLSA---GVQHSTPISLDVNDDAALDAEVA------K   68 (450)
T ss_dssp             CCEEEEEC-CSTTHHHHHHHHHT-TTCEE-EEEESSH--HHHHHTTT---TCTTEEEEECCTTCHHHHHHHHT------T
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHh-CcCEE-EEEECCH--HHHHHHHH---hcCCceEEEeecCCHHHHHHHHc------C
Confidence            46899999 69999999999984 67884 4566532  12222221   11 1111    12   3445553      8


Q ss_pred             ccEEEEccCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeEE
Q 031216          107 RAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVS  159 (163)
Q Consensus       107 ~DVVIDfT~p~~~~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv~  159 (163)
                      +|+||.++.+..+.+....+++.|+|++.. ..+.+ ....|.++|++.++.+
T Consensus        69 ~DvVIn~a~~~~~~~i~~a~l~~g~~vvd~-~~~~~-~~~~l~~aA~~aGv~~  119 (450)
T 1ff9_A           69 HDLVISLIPYTFHATVIKSAIRQKKHVVTT-SYVSP-AMMELDQAAKDAGITV  119 (450)
T ss_dssp             SSEEEECCC--CHHHHHHHHHHHTCEEEES-SCCCH-HHHHTHHHHHHTTCEE
T ss_pred             CcEEEECCccccchHHHHHHHhCCCeEEEe-ecccH-HHHHHHHHHHHCCCeE
Confidence            999998886655666778889999998764 23334 4577888888888754

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=97.94  E-value=4.5e-05  Score=63.22  Aligned_cols=108  Identities=11%  Similarity=0.034  Sum_probs=70.0

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCC-cEEEEEEecCCC--C---cchhhhccCCCCCCcceeC-CHHHHHhcccccCC
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARG-MEVAGAIDSHSV--G---EDIGMVCDMEQPLEIPVMS-DLTMVLGSISQSKA  106 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~-~eLvgvid~~~~--g---~~~~~l~g~~~~~gi~v~~-~l~ell~~~~~~~~  106 (163)
                      +++||+|+| +|.||..+++.+.+ .+ .++. ++|++..  .   .....+.    ..++  ++ ++++++.      +
T Consensus        23 M~m~IgvIG-~G~mG~~lA~~L~~-~G~~~V~-~~dr~~~~~~~~~~~~~~~~----~~g~--~~~s~~e~~~------~   87 (317)
T 4ezb_A           23 MMTTIAFIG-FGEAAQSIAGGLGG-RNAARLA-AYDLRFNDPAASGALRARAA----ELGV--EPLDDVAGIA------C   87 (317)
T ss_dssp             SCCEEEEEC-CSHHHHHHHHHHHT-TTCSEEE-EECGGGGCTTTHHHHHHHHH----HTTC--EEESSGGGGG------G
T ss_pred             cCCeEEEEC-ccHHHHHHHHHHHH-cCCCeEE-EEeCCCccccchHHHHHHHH----HCCC--CCCCHHHHHh------c
Confidence            468999999 69999999999874 56 7776 5675421  0   0111111    2344  56 7888774      7


Q ss_pred             ccEEEEccCchhHHHHHHHHHH---cCCcEEEeCCCCCHHHHHHHHHHhhhcCe
Q 031216          107 RAVVIDFTDASTVYDNVKQATA---FGMRSVVYVPHIQLETVSALSAFCDKASM  157 (163)
Q Consensus       107 ~DVVIDfT~p~~~~~~~~~al~---~G~~vVigttg~~~e~~~~L~~~A~~~~V  157 (163)
                      .|+||.+..+....+.+.....   .|. +|+-+++.++....++.+..++.++
T Consensus        88 aDvVi~avp~~~~~~~~~~i~~~l~~~~-ivv~~st~~p~~~~~~~~~l~~~g~  140 (317)
T 4ezb_A           88 ADVVLSLVVGAATKAVAASAAPHLSDEA-VFIDLNSVGPDTKALAAGAIATGKG  140 (317)
T ss_dssp             CSEEEECCCGGGHHHHHHHHGGGCCTTC-EEEECCSCCHHHHHHHHHHHHTSSC
T ss_pred             CCEEEEecCCHHHHHHHHHHHhhcCCCC-EEEECCCCCHHHHHHHHHHHHHcCC
Confidence            9999966666655555544332   344 5555666777778888877776654

>2g82_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G3PDH, glycolysis, oxidoreductase, NAD, rossmann fold; HET: NAD PGE; 1.65A {Thermus aquaticus} SCOP: c.2.1.3 d.81.1.1 PDB: 1cer_O* 1vc2_A*

Probab=97.93  E-value=1.9e-05  Score=66.69  Aligned_cols=98  Identities=27%  Similarity=0.217  Sum_probs=64.2

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec-------------CCCCcchhhh------ccCCCCCCcceeC--CH
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-------------HSVGEDIGMV------CDMEQPLEIPVMS--DL   94 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~-------------~~~g~~~~~l------~g~~~~~gi~v~~--~l   94 (163)
                      +||+|+|+ |++||.++|.+.++ +++++++-|.             +..|+-.+++      +-.. ...+.++.  ++
T Consensus         1 ikVgInG~-G~IGr~vlr~l~~~-~~evvaind~~~~~~~a~ll~~ds~~G~~~~~v~~~~~~l~v~-g~~i~v~~~~dp   77 (331)
T 2g82_O            1 MKVGINGF-GRIGRQVFRILHSR-GVEVALINDLTDNKTLAHLLKYDSIYHRFPGEVAYDDQYLYVD-GKAIRATAVKDP   77 (331)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHH-TCCEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEECSSEEEET-TEEEEEECCSSG
T ss_pred             CEEEEECc-CHHHHHHHHHHHhC-CCEEEEEecCCCHHHHhHhhhccccCCCCCceEEEcCCEEEEC-CEEEEEEecCCh
Confidence            58999996 99999999999888 9999998773             1233211111      0000 12345552  55


Q ss_pred             HHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCC-cEEEeCCC
Q 031216           95 TMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGM-RSVVYVPH  139 (163)
Q Consensus        95 ~ell~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~-~vVigttg  139 (163)
                      +++...   +..+|+|+++|......+.+...++.|. .+|+..++
T Consensus        78 ~~l~w~---~~gvDiV~estG~~~s~e~a~~~l~aGakkvVIsaps  120 (331)
T 2g82_O           78 KEIPWA---EAGVGVVIESTGVFTDADKAKAHLEGGAKKVIITAPA  120 (331)
T ss_dssp             GGSCTT---TTTEEEEEECSSSCCBHHHHTHHHHTTCSEEEESSCC
T ss_pred             hhCccc---ccCCCEEEECCCchhhHHHHHHHHHCCCCEEEECCCC
Confidence            554321   1378999987766677889999999995 46665543

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=97.89  E-value=7.8e-05  Score=61.69  Aligned_cols=99  Identities=9%  Similarity=0.046  Sum_probs=63.6

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCC----cEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEE
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARG----MEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVV  110 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~----~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVV  110 (163)
                      ++||+|+| .|.||..+++.+.+ .+    .++. +++++........+.    ..|+.+.++..+++.      .+|+|
T Consensus        22 ~mkI~iIG-~G~mG~ala~~L~~-~G~~~~~~V~-v~~r~~~~~~~~~l~----~~G~~~~~~~~e~~~------~aDvV   88 (322)
T 2izz_A           22 SMSVGFIG-AGQLAFALAKGFTA-AGVLAAHKIM-ASSPDMDLATVSALR----KMGVKLTPHNKETVQ------HSDVL   88 (322)
T ss_dssp             CCCEEEES-CSHHHHHHHHHHHH-TTSSCGGGEE-EECSCTTSHHHHHHH----HHTCEEESCHHHHHH------HCSEE
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHH-CCCCCcceEE-EECCCccHHHHHHHH----HcCCEEeCChHHHhc------cCCEE
Confidence            46899999 59999999999875 44    5554 566543111222322    346667788888775      79999


Q ss_pred             EEccCchhHHHHHHHHHH---cCCcEEEeCCCCCHHHHH
Q 031216          111 IDFTDASTVYDNVKQATA---FGMRSVVYVPHIQLETVS  146 (163)
Q Consensus       111 IDfT~p~~~~~~~~~al~---~G~~vVigttg~~~e~~~  146 (163)
                      |.+..|....+.+.....   .+.-+|.-+++.+.++.+
T Consensus        89 ilav~~~~~~~vl~~l~~~l~~~~ivvs~s~gi~~~~l~  127 (322)
T 2izz_A           89 FLAVKPHIIPFILDEIGADIEDRHIVVSCAAGVTISSIE  127 (322)
T ss_dssp             EECSCGGGHHHHHHHHGGGCCTTCEEEECCTTCCHHHHH
T ss_pred             EEEeCHHHHHHHHHHHHhhcCCCCEEEEeCCCCCHHHHH
Confidence            977777666665554332   355555544578765443

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=97.88  E-value=5.1e-05  Score=58.36  Aligned_cols=91  Identities=15%  Similarity=0.054  Sum_probs=54.0

Q ss_pred             CCee-EEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcce-------eCCHHHHHhcccccC
Q 031216           34 SNIK-VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-------MSDLTMVLGSISQSK  105 (163)
Q Consensus        34 ~~ir-V~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v-------~~~l~ell~~~~~~~  105 (163)
                      .|+| |.|+|++|.+|+.+++.+.+..+.+++++..+..  ..+.++...  ..++.+       .++++++++      
T Consensus         3 ~mmk~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~--~~~~~~~~~--~~~~~~~~~D~~d~~~~~~~~~------   72 (221)
T 3r6d_A            3 AMYXYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLK--TRIPPEIID--HERVTVIEGSFQNPGXLEQAVT------   72 (221)
T ss_dssp             CSCSEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHH--HHSCHHHHT--STTEEEEECCTTCHHHHHHHHT------
T ss_pred             ceEEEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCcc--ccchhhccC--CCceEEEECCCCCHHHHHHHHc------
Confidence            4566 9999999999999999998568899887654321  011121000  112221       123345553      


Q ss_pred             CccEEEEccCchh--HHHHHHHHHHcCC-cEE
Q 031216          106 ARAVVIDFTDAST--VYDNVKQATAFGM-RSV  134 (163)
Q Consensus       106 ~~DVVIDfT~p~~--~~~~~~~al~~G~-~vV  134 (163)
                      .+|+||...-+..  ....+..+.+.|. ++|
T Consensus        73 ~~d~vv~~ag~~n~~~~~~~~~~~~~~~~~iv  104 (221)
T 3r6d_A           73 NAEVVFVGAMESGSDMASIVKALSRXNIRRVI  104 (221)
T ss_dssp             TCSEEEESCCCCHHHHHHHHHHHHHTTCCEEE
T ss_pred             CCCEEEEcCCCCChhHHHHHHHHHhcCCCeEE
Confidence            8999997664311  3445566667775 444

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=97.88  E-value=0.00017  Score=59.78  Aligned_cols=102  Identities=16%  Similarity=0.122  Sum_probs=62.5

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCc--EEEEEEecCCCCcchhhhccCCCCCCc--ceeCCHHH-HHhcccccCCccE
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGM--EVAGAIDSHSVGEDIGMVCDMEQPLEI--PVMSDLTM-VLGSISQSKARAV  109 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~--eLvgvid~~~~g~~~~~l~g~~~~~gi--~v~~~l~e-ll~~~~~~~~~DV  109 (163)
                      ++||+|+| +|.||..+++.+.+ .+.  ++. ++|++..  ......    ..|+  ..++++++ ++.      ++|+
T Consensus        33 ~~kI~IIG-~G~mG~slA~~l~~-~G~~~~V~-~~dr~~~--~~~~a~----~~G~~~~~~~~~~~~~~~------~aDv   97 (314)
T 3ggo_A           33 MQNVLIVG-VGFMGGSFAKSLRR-SGFKGKIY-GYDINPE--SISKAV----DLGIIDEGTTSIAKVEDF------SPDF   97 (314)
T ss_dssp             CSEEEEES-CSHHHHHHHHHHHH-TTCCSEEE-EECSCHH--HHHHHH----HTTSCSEEESCTTGGGGG------CCSE
T ss_pred             CCEEEEEe-eCHHHHHHHHHHHh-CCCCCEEE-EEECCHH--HHHHHH----HCCCcchhcCCHHHHhhc------cCCE
Confidence            37999999 69999999999875 466  665 4675421  112211    2233  34678887 664      8999


Q ss_pred             EEEccCchhHHHHHHHHH---HcCCcEEEeCCCCCHHHHHHHHHHh
Q 031216          110 VIDFTDASTVYDNVKQAT---AFGMRSVVYVPHIQLETVSALSAFC  152 (163)
Q Consensus       110 VIDfT~p~~~~~~~~~al---~~G~~vVigttg~~~e~~~~L~~~A  152 (163)
                      ||.++.|....+.+....   +.+. +|+-.++......+.+.+..
T Consensus        98 Vilavp~~~~~~vl~~l~~~l~~~~-iv~d~~Svk~~~~~~~~~~l  142 (314)
T 3ggo_A           98 VMLSSPVRTFREIAKKLSYILSEDA-TVTDQGSVKGKLVYDLENIL  142 (314)
T ss_dssp             EEECSCGGGHHHHHHHHHHHSCTTC-EEEECCSCCTHHHHHHHHHH
T ss_pred             EEEeCCHHHHHHHHHHHhhccCCCc-EEEECCCCcHHHHHHHHHhc
Confidence            997777766655554443   3343 44444444434455555544

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=97.87  E-value=5.5e-05  Score=59.93  Aligned_cols=93  Identities=10%  Similarity=0.066  Sum_probs=61.8

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCC---cEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEE
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARG---MEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI  111 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~---~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVI  111 (163)
                      ++||+|+| .|.||+.+++.+.+...   .++. ++|++..            ..++.+++++++++.      ++|+||
T Consensus         4 ~m~i~iiG-~G~mG~~~a~~l~~~g~~~~~~v~-~~~~~~~------------~~g~~~~~~~~~~~~------~~D~vi   63 (262)
T 2rcy_A            4 NIKLGFMG-LGQMGSALAHGIANANIIKKENLF-YYGPSKK------------NTTLNYMSSNEELAR------HCDIIV   63 (262)
T ss_dssp             SSCEEEEC-CSHHHHHHHHHHHHHTSSCGGGEE-EECSSCC------------SSSSEECSCHHHHHH------HCSEEE
T ss_pred             CCEEEEEC-cCHHHHHHHHHHHHCCCCCCCeEE-EEeCCcc------------cCceEEeCCHHHHHh------cCCEEE
Confidence            46999999 59999999999875431   4544 5675431            124556778888775      799999


Q ss_pred             EccCchhHHHHHHHHHH--cCCcEEEeCCCCCHHHHHH
Q 031216          112 DFTDASTVYDNVKQATA--FGMRSVVYVPHIQLETVSA  147 (163)
Q Consensus       112 DfT~p~~~~~~~~~al~--~G~~vVigttg~~~e~~~~  147 (163)
                      .++.|....+.+.....  .+..+|+-+.+++.+..++
T Consensus        64 ~~v~~~~~~~v~~~l~~~l~~~~vv~~~~gi~~~~l~~  101 (262)
T 2rcy_A           64 CAVKPDIAGSVLNNIKPYLSSKLLISICGGLNIGKLEE  101 (262)
T ss_dssp             ECSCTTTHHHHHHHSGGGCTTCEEEECCSSCCHHHHHH
T ss_pred             EEeCHHHHHHHHHHHHHhcCCCEEEEECCCCCHHHHHH
Confidence            77776665555544322  3455666666888765443

>2b4r_O Glyceraldehyde-3-phosphate dehydrogenase; SGPP, structural genomics, PSI, structural genomi pathogenic protozoa consortium; HET: NAD AES; 2.25A {Plasmodium falciparum} SCOP: c.2.1.3 d.81.1.1 PDB: 2b4t_O* 1ywg_O*

Probab=97.87  E-value=2.8e-05  Score=66.16  Aligned_cols=100  Identities=20%  Similarity=0.171  Sum_probs=63.2

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec--C------------CCCcchhh--hcc--CC-CCCCcceeC--C
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS--H------------SVGEDIGM--VCD--ME-QPLEIPVMS--D   93 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~--~------------~~g~~~~~--l~g--~~-~~~gi~v~~--~   93 (163)
                      .+||+|.| .|++||.++|.+.+++++||+++-|+  +            ..|+-.++  ..+  +. ....+.++.  +
T Consensus        11 ~~kv~ING-fGrIGr~v~ra~~~~~~~evvaInd~~~~~~~~a~l~~yDS~hg~~~~~v~~~~~~l~v~Gk~i~v~~~~d   89 (345)
T 2b4r_O           11 ATKLGING-FGRIGRLVFRAAFGRKDIEVVAINDPFMDLNHLCYLLKYDSVHGQFPCEVTHADGFLLIGEKKVSVFAEKD   89 (345)
T ss_dssp             CEEEEEEC-CSHHHHHHHHHHHTCSSEEEEEEECTTCCHHHHHHHHHCCTTTCSCSSCEEEETTEEEESSCEEEEECCSS
T ss_pred             heEEEEeC-CchHHHHHHHHHhhCCCcEEEEEcCCCCChHHHHHHhccCCCCCcCCCCEEEcCCEEEECCEEEEEEEcCC
Confidence            48999999 79999999999999999999999882  1            01110000  000  00 011234443  4


Q ss_pred             HHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCc-EEEeCC
Q 031216           94 LTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMR-SVVYVP  138 (163)
Q Consensus        94 l~ell~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~-vVigtt  138 (163)
                      ++++-..   +..+|+|+++|-.....+.+...++.|.. ||+-.+
T Consensus        90 p~~~~w~---~~gvDiV~estG~f~s~e~a~~hl~aGakkVVIsap  132 (345)
T 2b4r_O           90 PSQIPWG---KCQVDVVCESTGVFLTKELASSHLKGGAKKVIMSAP  132 (345)
T ss_dssp             GGGCCHH---HHTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSC
T ss_pred             cccCccc---ccCCCEEEECcCccccHhhHHHHHHCCCCEEEECCC
Confidence            4443210   12799999877656667888888889865 565333

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=97.86  E-value=9.5e-05  Score=59.61  Aligned_cols=105  Identities=12%  Similarity=0.163  Sum_probs=62.7

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcC-CcEEEEEEecCCCCcchhhhccCCCCCCc--ceeCCHHHHHhcccccCCccEEE
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAIDSHSVGEDIGMVCDMEQPLEI--PVMSDLTMVLGSISQSKARAVVI  111 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~-~~eLvgvid~~~~g~~~~~l~g~~~~~gi--~v~~~l~ell~~~~~~~~~DVVI  111 (163)
                      ++||+|+| +|.||+.+++.+.+.. +.++. ++|+..  .....+.    ..++  ..+.++++++.      ++|+||
T Consensus         6 ~~~I~iIG-~G~mG~~~a~~l~~~g~~~~V~-~~d~~~--~~~~~~~----~~g~~~~~~~~~~~~~~------~aDvVi   71 (290)
T 3b1f_A            6 EKTIYIAG-LGLIGASLALGIKRDHPHYKIV-GYNRSD--RSRDIAL----ERGIVDEATADFKVFAA------LADVII   71 (290)
T ss_dssp             CCEEEEEC-CSHHHHHHHHHHHHHCTTSEEE-EECSSH--HHHHHHH----HTTSCSEEESCTTTTGG------GCSEEE
T ss_pred             cceEEEEe-eCHHHHHHHHHHHhCCCCcEEE-EEcCCH--HHHHHHH----HcCCcccccCCHHHhhc------CCCEEE
Confidence            57999999 6999999999988653 67765 566532  1122221    1232  34677777664      899999


Q ss_pred             EccCchhHHHHHHHHHHc---CCcEEEeCCCCCHHHHHHHHHHhh
Q 031216          112 DFTDASTVYDNVKQATAF---GMRSVVYVPHIQLETVSALSAFCD  153 (163)
Q Consensus       112 DfT~p~~~~~~~~~al~~---G~~vVigttg~~~e~~~~L~~~A~  153 (163)
                      .++.|....+.+......   .-.+|+-.++......+.|.+...
T Consensus        72 lavp~~~~~~v~~~l~~~~l~~~~ivi~~~~~~~~~~~~l~~~l~  116 (290)
T 3b1f_A           72 LAVPIKKTIDFIKILADLDLKEDVIITDAGSTKYEIVRAAEYYLK  116 (290)
T ss_dssp             ECSCHHHHHHHHHHHHTSCCCTTCEEECCCSCHHHHHHHHHHHHT
T ss_pred             EcCCHHHHHHHHHHHHhcCCCCCCEEEECCCCchHHHHHHHHhcc
Confidence            777666666666554433   123444333333333355555544

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=97.86  E-value=8.5e-05  Score=59.16  Aligned_cols=86  Identities=12%  Similarity=0.099  Sum_probs=55.9

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCccee----CC---HHHHHhcccccCCcc
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM----SD---LTMVLGSISQSKARA  108 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~----~~---l~ell~~~~~~~~~D  108 (163)
                      |||.|+|++|.+|+.+++.+.+.++.++.++..+...   ...+.    ..++.+.    .|   +++++      ..+|
T Consensus         1 M~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~---~~~~~----~~~v~~~~~D~~d~~~l~~~~------~~~d   67 (289)
T 3e48_A            1 MNIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEK---VPDDW----RGKVSVRQLDYFNQESMVEAF------KGMD   67 (289)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGG---SCGGG----BTTBEEEECCTTCHHHHHHHT------TTCS
T ss_pred             CEEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHH---HHHhh----hCCCEEEEcCCCCHHHHHHHH------hCCC
Confidence            5799999999999999999887669999987664321   11111    1222221    23   34455      3899


Q ss_pred             EEEEccCc--------hhHHHHHHHHHHcCCc-EE
Q 031216          109 VVIDFTDA--------STVYDNVKQATAFGMR-SV  134 (163)
Q Consensus       109 VVIDfT~p--------~~~~~~~~~al~~G~~-vV  134 (163)
                      +||.+..+        ......+..+.+.|+. +|
T Consensus        68 ~vi~~a~~~~~~~~~~~~~~~l~~aa~~~gv~~iv  102 (289)
T 3e48_A           68 TVVFIPSIIHPSFKRIPEVENLVYAAKQSGVAHII  102 (289)
T ss_dssp             EEEECCCCCCSHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred             EEEEeCCCCccchhhHHHHHHHHHHHHHcCCCEEE
Confidence            99987643        2334566788888864 44

>2ep7_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase, structural genomics, NPPSFA; HET: NAD; 2.30A {Aquifex aeolicus}

Probab=97.86  E-value=1.6e-05  Score=67.57  Aligned_cols=99  Identities=26%  Similarity=0.220  Sum_probs=62.7

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec-------------CCCCcchhhh--cc--CC-CCCCcceeC--CH
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-------------HSVGEDIGMV--CD--ME-QPLEIPVMS--DL   94 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~-------------~~~g~~~~~l--~g--~~-~~~gi~v~~--~l   94 (163)
                      ++||+|.|+ |++||.++|.+.++++++++++-|.             +..|+-.+++  .+  +. ....+.++.  ++
T Consensus         2 ~ikV~InGf-GrIGr~v~r~l~~~~~~evvaInd~~~~~~~a~ll~yDs~hG~~~~~v~~~~~~l~v~Gk~i~v~~~~dp   80 (342)
T 2ep7_A            2 AIKVGINGF-GRIGRSFFRASWGREEIEIVAINDLTDAKHLAHLLKYDSVHGIFKGSVEAKDDSIVVDGKEIKVFAQKDP   80 (342)
T ss_dssp             -CEEEEECC-SHHHHHHHHHHTTCTTCEEEEEECSSCHHHHHHHHHEETTTEECSSCEEECSSEEEETTEEEEEECCSSG
T ss_pred             ceEEEEECC-CHHHHHHHHHHHhCCCceEEEEecCCChHHHhhhhhcccccccCCCcEEEcCCEEEECCEEEEEEEcCCh
Confidence            379999995 9999999999998999999999874             1122100000  00  00 011244553  44


Q ss_pred             HHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCc-EEEeC
Q 031216           95 TMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMR-SVVYV  137 (163)
Q Consensus        95 ~ell~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~-vVigt  137 (163)
                      +++-..   +..+|+|+++|-.....+.+...++.|.. ||+-.
T Consensus        81 ~~~~w~---~~gvDiV~estG~~~s~e~a~~hl~aGakkVvisa  121 (342)
T 2ep7_A           81 SQIPWG---DLGVDVVIEATGVFRDRENASKHLQGGAKKVIITA  121 (342)
T ss_dssp             GGCCHH---HHTCSEEEECSSSCCBHHHHTTTGGGTCSEEEESS
T ss_pred             hhCCcc---ccCCCEEEECCCchhhhhhhHHHHhcCCCEEEecC
Confidence            443210   12799999877666678888999999965 45533

>2yv3_A Aspartate-semialdehyde dehydrogenase; aspartate pathway, structural genomics; 2.70A {Thermus thermophilus}

Probab=97.84  E-value=2.5e-05  Score=65.66  Aligned_cols=90  Identities=17%  Similarity=0.097  Sum_probs=60.1

Q ss_pred             eeEEEEcCCCHHHHHHHHHHH--hcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeC-CHHHHHhcccccCCccEEEE
Q 031216           36 IKVIINGAVKEIGRAAVIAVT--KARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS-DLTMVLGSISQSKARAVVID  112 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~--~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~-~l~ell~~~~~~~~~DVVID  112 (163)
                      +||+|+||+|++|+.+++.+.  .+|..++..+.+.+..|..+. +.    ...+.+++ +.+   .     -.+|+||+
T Consensus         1 mkVaI~GAtG~iG~~llr~L~~~~~~~~~l~~~~s~~~~g~~l~-~~----g~~i~v~~~~~~---~-----~~~DvV~~   67 (331)
T 2yv3_A            1 MRVAVVGATGAVGREILKVLEARNFPLSELRLYASPRSAGVRLA-FR----GEEIPVEPLPEG---P-----LPVDLVLA   67 (331)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCCCSCCEEEECGGGSSCEEE-ET----TEEEEEEECCSS---C-----CCCSEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEeeccccCCCEEE-Ec----CceEEEEeCChh---h-----cCCCEEEE
Confidence            589999999999999999998  788888875544433343322 10    11233332 111   1     16899996


Q ss_pred             ccCchhHHHHHHHHHHcCCcEEEeCC
Q 031216          113 FTDASTVYDNVKQATAFGMRSVVYVP  138 (163)
Q Consensus       113 fT~p~~~~~~~~~al~~G~~vVigtt  138 (163)
                      ++......+.+..+++.|..+|.-..
T Consensus        68 a~g~~~s~~~a~~~~~~G~~vId~s~   93 (331)
T 2yv3_A           68 SAGGGISRAKALVWAEGGALVVDNSS   93 (331)
T ss_dssp             CSHHHHHHHHHHHHHHTTCEEEECSS
T ss_pred             CCCccchHHHHHHHHHCCCEEEECCC
Confidence            65555668899999999998776443

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=97.81  E-value=9.1e-05  Score=64.75  Aligned_cols=116  Identities=14%  Similarity=0.113  Sum_probs=69.5

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT  114 (163)
                      ++||+|+| +|.||+.+++.+.+ .+.++. ++|++.  .....+.......++..+.|+++++..   ..++|+||.++
T Consensus         5 ~~~IgvIG-~G~mG~~lA~~L~~-~G~~V~-v~dr~~--~~~~~l~~~~~~~gi~~~~s~~e~v~~---l~~aDvVilav   76 (474)
T 2iz1_A            5 QANFGVVG-MAVMGKNLALNVES-RGYTVA-IYNRTT--SKTEEVFKEHQDKNLVFTKTLEEFVGS---LEKPRRIMLMV   76 (474)
T ss_dssp             TBSEEEEC-CSHHHHHHHHHHHH-TTCCEE-EECSSH--HHHHHHHHHTTTSCEEECSSHHHHHHT---BCSSCEEEECC
T ss_pred             CCcEEEEe-eHHHHHHHHHHHHh-CCCEEE-EEcCCH--HHHHHHHHhCcCCCeEEeCCHHHHHhh---ccCCCEEEEEc
Confidence            46899999 69999999999885 577754 667542  122222210001256678899998751   02599999666


Q ss_pred             Cchh-HHHHHHH---HHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeEE
Q 031216          115 DAST-VYDNVKQ---ATAFGMRSVVYVPHIQLETVSALSAFCDKASMVS  159 (163)
Q Consensus       115 ~p~~-~~~~~~~---al~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv~  159 (163)
                      .+.. ..+.+..   .++.|..+|...++. .....++.+..++.++.+
T Consensus        77 p~~~~v~~vl~~l~~~l~~g~iiId~s~~~-~~~~~~l~~~l~~~g~~~  124 (474)
T 2iz1_A           77 QAGAATDATIKSLLPLLDIGDILIDGGNTH-FPDTMRRNAELADSGINF  124 (474)
T ss_dssp             CTTHHHHHHHHHHGGGCCTTCEEEECSCCC-HHHHHHHHHHTTTSSCEE
T ss_pred             cCchHHHHHHHHHHhhCCCCCEEEECCCCC-HHHHHHHHHHHHHCCCeE
Confidence            5433 3344332   344577666655555 344456666666655543

>3pym_A GAPDH 3, glyceraldehyde-3-phosphate dehydrogenase 3; NAD(P)-binding rossmann-fold domain, alpha and beta protein, oxidoreductase; HET: NAD; 2.00A {Saccharomyces cerevisiae} PDB: 2i5p_O*

Probab=97.80  E-value=7.5e-05  Score=63.22  Aligned_cols=99  Identities=24%  Similarity=0.298  Sum_probs=65.0

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC--------------CCCcchhhhc--c----CCCCCCccee--C
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH--------------SVGEDIGMVC--D----MEQPLEIPVM--S   92 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~--------------~~g~~~~~l~--g----~~~~~gi~v~--~   92 (163)
                      |+||+|.| .||+||.+.|.+.+.+++++|++-|..              ..|+=.+++.  +    + ....+.++  .
T Consensus         1 ~~kv~ING-fGrIGr~v~R~~~~~~~~~ivaiNd~~~d~~~~a~l~kyDS~hG~f~~~v~~~~~~l~i-~Gk~I~v~~e~   78 (332)
T 3pym_A            1 MVRVAING-FGRIGRLVMRIALSRPNVEVVALNDPFITNDYAAYMFKYDSTHGRYAGEVSHDDKHIIV-DGKKIATYQER   78 (332)
T ss_dssp             CCEEEEEC-CSHHHHHHHHHHHHSTTCEEEEEECTTCCHHHHHHHHHCCTTTCSCSSCEEECSSEEEE-TTEEEEEECCS
T ss_pred             CeEEEEEC-CCcHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHhcccCCCCCCCCcEEEcCCEEEE-CCEEEEEEeec
Confidence            68999999 799999999999888999999998741              0121001100  0    0 01124454  3


Q ss_pred             CHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCc-EEEeCC
Q 031216           93 DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMR-SVVYVP  138 (163)
Q Consensus        93 ~l~ell~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~-vVigtt  138 (163)
                      +++++-..   +..+|+|++.|-.....+.+...++.|.. ||+-.|
T Consensus        79 dp~~i~w~---~~gvDiVlesTG~f~s~e~a~~hl~aGAkkViIsap  122 (332)
T 3pym_A           79 DPANLPWG---SSNVDIAIDSTGVFKELDTAQKHIDAGAKKVVITAP  122 (332)
T ss_dssp             SGGGSCTT---TTTCSEEEECSSSSCSHHHHHHHHHTTCSEEEESSC
T ss_pred             ccccCCcc---ccCccEEEEecccccCHHHHHHHHHcCCCEEEECCC
Confidence            55554331   24899999877666678888889999964 555333

>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6

Probab=97.79  E-value=2.2e-06  Score=69.49  Aligned_cols=93  Identities=9%  Similarity=0.008  Sum_probs=50.7

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT  114 (163)
                      |+||+|+| .|+||+.+++.+.+.  .+++.++|++.  .....+..   ..+. .+.++++++.      ++|+||.++
T Consensus         2 ~m~I~iIG-~G~mG~~la~~l~~~--~~v~~v~~~~~--~~~~~~~~---~~g~-~~~~~~~~~~------~~DvVilav   66 (276)
T 2i76_A            2 SLVLNFVG-TGTLTRFFLECLKDR--YEIGYILSRSI--DRARNLAE---VYGG-KAATLEKHPE------LNGVVFVIV   66 (276)
T ss_dssp             --CCEEES-CCHHHHHHHHTTC------CCCEECSSH--HHHHHHHH---HTCC-CCCSSCCCCC---------CEEECS
T ss_pred             CceEEEEe-CCHHHHHHHHHHHHc--CcEEEEEeCCH--HHHHHHHH---HcCC-ccCCHHHHHh------cCCEEEEeC
Confidence            57999999 599999999988754  77766777542  11222211   2234 5667776653      789999777


Q ss_pred             CchhHHHHHHHHHHcCCcEEEeCC-CCCHH
Q 031216          115 DASTVYDNVKQATAFGMRSVVYVP-HIQLE  143 (163)
Q Consensus       115 ~p~~~~~~~~~al~~G~~vVigtt-g~~~e  143 (163)
                      .|....+.+......+.-+| -++ +++.+
T Consensus        67 ~~~~~~~v~~~l~~~~~ivi-~~s~~~~~~   95 (276)
T 2i76_A           67 PDRYIKTVANHLNLGDAVLV-HCSGFLSSE   95 (276)
T ss_dssp             CTTTHHHHHTTTCCSSCCEE-ECCSSSCGG
T ss_pred             ChHHHHHHHHHhccCCCEEE-ECCCCCcHH
Confidence            66665555543323344444 344 44443

>3lvf_P GAPDH 1, glyceraldehyde-3-phosphate dehydrogenase 1; oxidoreductase, glycolysis, rossmann fold; HET: NAD; 1.70A {Staphylococcus aureus} PDB: 3vaz_P* 3l6o_Q 3k73_Q 3lc2_O* 3lc7_O 3lc1_P* 3hq4_R* 3kv3_O* 3l4s_Q* 3k9q_Q* 3ksd_Q* 3ksz_O*

Probab=97.78  E-value=0.00012  Score=62.14  Aligned_cols=100  Identities=24%  Similarity=0.281  Sum_probs=65.6

Q ss_pred             CCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-------------CCCcchhhh------ccCCCCCCccee--
Q 031216           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-------------SVGEDIGMV------CDMEQPLEIPVM--   91 (163)
Q Consensus        33 ~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~-------------~~g~~~~~l------~g~~~~~gi~v~--   91 (163)
                      ++++||+|.| .||+||.+.|.+.+.+++++|++-|..             ..|+=.+++      +-+ ....+.++  
T Consensus         2 ~m~~kv~ING-fGrIGr~v~R~~~~~~~~~ivaind~~d~~~~a~l~kyDS~hG~f~~~v~~~~~~l~i-nGk~I~v~~e   79 (338)
T 3lvf_P            2 SMAVKVAING-FGRIGRLAFRRIQEVEGLEVVAVNDLTDDDMLAHLLKYDTMQGRFTGEVEVVDGGFRV-NGKEVKSFSE   79 (338)
T ss_dssp             CCCEEEEEEC-CSHHHHHHHHHHHTSTTEEEEEEECSSCHHHHHHHHHCCTTTCCCSSCEEEETTEEEE-TTEEEEEECC
T ss_pred             CccEEEEEEC-CCcHHHHHHHHHHHCCCceEEEEecCCCHHHHHHHhccCCCCCCcCCeEEEcCCEEEE-CCEEEEEEEe
Confidence            3568999999 699999999999988999999998721             112100100      000 01124454  


Q ss_pred             CCHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCc-EEEeC
Q 031216           92 SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMR-SVVYV  137 (163)
Q Consensus        92 ~~l~ell~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~-vVigt  137 (163)
                      .+++++-..   +..+|+|++.|-.....+.+...++.|.. ||+-.
T Consensus        80 ~dp~~i~w~---~~gvDiVlesTG~f~s~e~a~~hl~aGAkkViISa  123 (338)
T 3lvf_P           80 PDASKLPWK---DLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLISA  123 (338)
T ss_dssp             SCGGGSCTT---TTTCSEEEECSSSCCBHHHHHHHHHTTCSEEEESS
T ss_pred             cccccCCcc---ccCCCEEEEccCCcCCHHHHHHHHHcCCCEEEECC
Confidence            456554331   24899999877666678888899999964 55533

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=97.78  E-value=0.00021  Score=56.80  Aligned_cols=95  Identities=15%  Similarity=0.132  Sum_probs=57.1

Q ss_pred             CCCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCC---cc---------hhhhccCCCCCCcceeCCHHHH
Q 031216           30 NPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG---ED---------IGMVCDMEQPLEIPVMSDLTMV   97 (163)
Q Consensus        30 ~~~~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g---~~---------~~~l~g~~~~~gi~v~~~l~el   97 (163)
                      ......+||+|+| +|.||+.+++.+.+ .+.++. +.|++..-   +.         ..++..   ..+...+.+++++
T Consensus        14 ~~~~~~~kIgiIG-~G~mG~alA~~L~~-~G~~V~-~~~r~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~e~   87 (245)
T 3dtt_A           14 NLYFQGMKIAVLG-TGTVGRTMAGALAD-LGHEVT-IGTRDPKATLARAEPDAMGAPPFSQWLP---EHPHVHLAAFADV   87 (245)
T ss_dssp             -----CCEEEEEC-CSHHHHHHHHHHHH-TTCEEE-EEESCHHHHHTCC-------CCHHHHGG---GSTTCEEEEHHHH
T ss_pred             ccccCCCeEEEEC-CCHHHHHHHHHHHH-CCCEEE-EEeCChhhhhhhhhhhhhcchhhhHHHh---hcCceeccCHHHH
Confidence            3344568999999 69999999999885 578876 45654210   00         122221   2233456788888


Q ss_pred             HhcccccCCccEEEEccCchhHHHHHH----HHHHcCCcEEEeC
Q 031216           98 LGSISQSKARAVVIDFTDASTVYDNVK----QATAFGMRSVVYV  137 (163)
Q Consensus        98 l~~~~~~~~~DVVIDfT~p~~~~~~~~----~al~~G~~vVigt  137 (163)
                      +.      .+|+||.+..+....+.+.    ..+ .|.-+|.-+
T Consensus        88 ~~------~aDvVilavp~~~~~~~~~~i~~~~l-~g~ivi~~s  124 (245)
T 3dtt_A           88 AA------GAELVVNATEGASSIAALTAAGAENL-AGKILVDIA  124 (245)
T ss_dssp             HH------HCSEEEECSCGGGHHHHHHHHCHHHH-TTSEEEECC
T ss_pred             Hh------cCCEEEEccCcHHHHHHHHHhhhhhc-CCCEEEECC
Confidence            75      7999997766665554443    233 566666544

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=97.78  E-value=0.00019  Score=62.90  Aligned_cols=113  Identities=10%  Similarity=0.100  Sum_probs=67.7

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhcc-CCCCCCcceeCCHHHHHhcccccCCccEEEEcc
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCD-MEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g-~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT  114 (163)
                      +||+|+| +|.||+.++..+.+ .+.++. ++|++.  .....+.. .....++..+.|+++++..+   .++|+||.++
T Consensus         3 m~IgvIG-~G~mG~~lA~~La~-~G~~V~-v~dr~~--~~~~~l~~~~~~g~gi~~~~~~~e~v~~l---~~aDvVilaV   74 (482)
T 2pgd_A            3 ADIALIG-LAVMGQNLILNMND-HGFVVC-AFNRTV--SKVDDFLANEAKGTKVLGAHSLEEMVSKL---KKPRRIILLV   74 (482)
T ss_dssp             BSEEEEC-CSHHHHHHHHHHHH-TTCCEE-EECSST--HHHHHHHHTTTTTSSCEECSSHHHHHHHB---CSSCEEEECS
T ss_pred             CeEEEEC-hHHHHHHHHHHHHH-CCCeEE-EEeCCH--HHHHHHHhccccCCCeEEeCCHHHHHhhc---cCCCEEEEeC
Confidence            6899999 69999999999875 577754 677542  22222221 00014566788999887411   3899999655


Q ss_pred             Cch-hHHHHHH---HHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCe
Q 031216          115 DAS-TVYDNVK---QATAFGMRSVVYVPHIQLETVSALSAFCDKASM  157 (163)
Q Consensus       115 ~p~-~~~~~~~---~al~~G~~vVigttg~~~e~~~~L~~~A~~~~V  157 (163)
                      .+. .+.+.+.   ..++.|..+|...++.. .+..++.+..++.++
T Consensus        75 p~~~~v~~vl~~l~~~l~~g~iII~~s~~~~-~~~~~l~~~l~~~g~  120 (482)
T 2pgd_A           75 KAGQAVDNFIEKLVPLLDIGDIIIDGGNSEY-RDTMRRCRDLKDKGI  120 (482)
T ss_dssp             CTTHHHHHHHHHHHHHCCTTCEEEECSCCCH-HHHHHHHHHHHHTTC
T ss_pred             CChHHHHHHHHHHHhhcCCCCEEEECCCCCH-HHHHHHHHHHHHcCC
Confidence            443 3333333   34456776666555653 333445555555454

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=97.78  E-value=9.9e-05  Score=56.61  Aligned_cols=92  Identities=15%  Similarity=0.165  Sum_probs=54.2

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcch-hhhccCCCCCCcceeCCHHHHHhcccccCCccEEEE
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDI-GMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~-~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVID  112 (163)
                      .|+||.|+|++|.+|+.+++.+.+ .+.+++++..+....... ..+.-.  ..++.-.+++++++.      ++|+||.
T Consensus         3 ~m~~ilItGatG~iG~~l~~~L~~-~g~~V~~~~r~~~~~~~~~~~~~~~--~~Dl~d~~~~~~~~~------~~d~vi~   73 (227)
T 3dhn_A            3 KVKKIVLIGASGFVGSALLNEALN-RGFEVTAVVRHPEKIKIENEHLKVK--KADVSSLDEVCEVCK------GADAVIS   73 (227)
T ss_dssp             CCCEEEEETCCHHHHHHHHHHHHT-TTCEEEEECSCGGGCCCCCTTEEEE--CCCTTCHHHHHHHHT------TCSEEEE
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHH-CCCEEEEEEcCcccchhccCceEEE--EecCCCHHHHHHHhc------CCCEEEE
Confidence            368999999999999999999985 578888765432110000 000000  111111133445553      7999998


Q ss_pred             ccCch------------hHHHHHHHHHHcCC-cEE
Q 031216          113 FTDAS------------TVYDNVKQATAFGM-RSV  134 (163)
Q Consensus       113 fT~p~------------~~~~~~~~al~~G~-~vV  134 (163)
                      +..+.            .....+..+.+.|+ ++|
T Consensus        74 ~a~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v  108 (227)
T 3dhn_A           74 AFNPGWNNPDIYDETIKVYLTIIDGVKKAGVNRFL  108 (227)
T ss_dssp             CCCC------CCSHHHHHHHHHHHHHHHTTCSEEE
T ss_pred             eCcCCCCChhHHHHHHHHHHHHHHHHHHhCCCEEE
Confidence            76432            23456677778886 455

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=97.75  E-value=0.00013  Score=56.96  Aligned_cols=97  Identities=14%  Similarity=0.079  Sum_probs=58.3

Q ss_pred             CCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEE
Q 031216           31 PPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVV  110 (163)
Q Consensus        31 ~~~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVV  110 (163)
                      +|..++||+|+| +|+||+.+++.+.+ .+.++. ++|++.  .....+.    ..++.++ ++++++.      ++|+|
T Consensus        24 ~~~~~~~I~iiG-~G~~G~~la~~l~~-~g~~V~-~~~r~~--~~~~~~~----~~g~~~~-~~~~~~~------~~DvV   87 (215)
T 2vns_A           24 VPDEAPKVGILG-SGDFARSLATRLVG-SGFKVV-VGSRNP--KRTARLF----PSAAQVT-FQEEAVS------SPEVI   87 (215)
T ss_dssp             -----CCEEEEC-CSHHHHHHHHHHHH-TTCCEE-EEESSH--HHHHHHS----BTTSEEE-EHHHHTT------SCSEE
T ss_pred             CCCCCCEEEEEc-cCHHHHHHHHHHHH-CCCEEE-EEeCCH--HHHHHHH----HcCCcee-cHHHHHh------CCCEE
Confidence            344568999999 69999999999875 467766 466532  1222222    2255554 7777764      89999


Q ss_pred             EEccCchhHHHH--HHHHHHcCCcEEEeCCCCCHHH
Q 031216          111 IDFTDASTVYDN--VKQATAFGMRSVVYVPHIQLET  144 (163)
Q Consensus       111 IDfT~p~~~~~~--~~~al~~G~~vVigttg~~~e~  144 (163)
                      |.++.|....+.  +...+ .+..+|.-+++.+.+.
T Consensus        88 i~av~~~~~~~v~~l~~~~-~~~~vv~~s~g~~~~~  122 (215)
T 2vns_A           88 FVAVFREHYSSLCSLSDQL-AGKILVDVSNPTEQEH  122 (215)
T ss_dssp             EECSCGGGSGGGGGGHHHH-TTCEEEECCCCCHHHH
T ss_pred             EECCChHHHHHHHHHHHhc-CCCEEEEeCCCccccc
Confidence            977765433222  22333 6777776566775443

>4dib_A GAPDH, glyceraldehyde 3-phosphate dehydrogenase; niaid, structural genomics, national institute of allergy AN infectious diseases; 2.55A {Bacillus anthracis}

Probab=97.73  E-value=7.5e-05  Score=63.50  Aligned_cols=101  Identities=21%  Similarity=0.202  Sum_probs=65.0

Q ss_pred             CCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-------------CCCcchhhh------ccCCCCCCccee--
Q 031216           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-------------SVGEDIGMV------CDMEQPLEIPVM--   91 (163)
Q Consensus        33 ~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~-------------~~g~~~~~l------~g~~~~~gi~v~--   91 (163)
                      +.|+||+|.| .||+||.+.|.+.+.+++++|++-|..             ..|+=-+++      +-+ ....+.++  
T Consensus         2 ~~~~kv~ING-fGrIGr~v~Ra~~~~~~~~ivaINd~~d~~~~a~llkyDS~hG~f~~~v~~~~~~l~i-nGk~I~v~~e   79 (345)
T 4dib_A            2 NAMTRVAING-FGRIGRMVFRQAIKESAFEIVAINASYPSETLAHLIKYDTVHGKFDGTVEAFEDHLLV-DGKMIRLLNN   79 (345)
T ss_dssp             --CCEEEEEC-CSHHHHHHHHHHTTCSSSEEEEEECSSCHHHHHHHHHEETTTEECSSCEEECSSEEEE-TTEEEEEECC
T ss_pred             CccEEEEEEC-CCcHHHHHHHHHHhCCCceEEEEcCCCCHHHHHHHhcccCCCCCCCCcEEEcCCEEEE-CCEEEEEeec
Confidence            4589999999 799999999999888999999998741             011100000      000 01124454  


Q ss_pred             CCHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCc-EEEeCC
Q 031216           92 SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMR-SVVYVP  138 (163)
Q Consensus        92 ~~l~ell~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~-vVigtt  138 (163)
                      .+++++-..   +..+|+|++.|-.....+.+...++.|.. ||+-.|
T Consensus        80 ~dp~~i~w~---~~gvDiVlesTG~f~s~e~a~~hl~aGAkkViISap  124 (345)
T 4dib_A           80 RDPKELPWT---DLGVEVVIEATGKFNSKEKAILHVEAGAKKVILTAP  124 (345)
T ss_dssp             SCGGGSCTT---TTTEEEEEECSSSCCBHHHHTHHHHTTCSEEEESSC
T ss_pred             CChhhCCcc---ccCccEEEEeccCcCCHHHHHHHHHCCCCEEEECCC
Confidence            456554331   24899999877666667888888999964 555333

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=97.73  E-value=0.00037  Score=55.84  Aligned_cols=103  Identities=17%  Similarity=0.163  Sum_probs=61.0

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCc--EEEEEEecCCCCcchhhhccCCCCCCcc--eeCCHHHHHhcccccC-CccE
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGM--EVAGAIDSHSVGEDIGMVCDMEQPLEIP--VMSDLTMVLGSISQSK-ARAV  109 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~--eLvgvid~~~~g~~~~~l~g~~~~~gi~--v~~~l~ell~~~~~~~-~~DV  109 (163)
                      |+||+|+| +|.||..+++.+.+ .+.  ++. ++|+..  .....+.    ..|+.  .++++++++      . ++|+
T Consensus         1 m~~I~iIG-~G~mG~~~a~~l~~-~g~~~~V~-~~d~~~--~~~~~~~----~~g~~~~~~~~~~~~~------~~~aDv   65 (281)
T 2g5c_A            1 MQNVLIVG-VGFMGGSFAKSLRR-SGFKGKIY-GYDINP--ESISKAV----DLGIIDEGTTSIAKVE------DFSPDF   65 (281)
T ss_dssp             CCEEEEES-CSHHHHHHHHHHHH-TTCCSEEE-EECSCH--HHHHHHH----HTTSCSEEESCGGGGG------GTCCSE
T ss_pred             CcEEEEEe-cCHHHHHHHHHHHh-cCCCcEEE-EEeCCH--HHHHHHH----HCCCcccccCCHHHHh------cCCCCE
Confidence            56899999 69999999999875 455  665 466532  1111111    12332  356777765      4 7999


Q ss_pred             EEEccCchhHHHHHHHH---HHcCCcEEEeCCCCCHHHHHHHHHHhh
Q 031216          110 VIDFTDASTVYDNVKQA---TAFGMRSVVYVPHIQLETVSALSAFCD  153 (163)
Q Consensus       110 VIDfT~p~~~~~~~~~a---l~~G~~vVigttg~~~e~~~~L~~~A~  153 (163)
                      ||.++.|....+.+...   ++.+. +|+-..+......+.|.+...
T Consensus        66 Vilavp~~~~~~v~~~l~~~l~~~~-iv~~~~~~~~~~~~~l~~~l~  111 (281)
T 2g5c_A           66 VMLSSPVRTFREIAKKLSYILSEDA-TVTDQGSVKGKLVYDLENILG  111 (281)
T ss_dssp             EEECSCHHHHHHHHHHHHHHSCTTC-EEEECCSCCTHHHHHHHHHHG
T ss_pred             EEEcCCHHHHHHHHHHHHhhCCCCc-EEEECCCCcHHHHHHHHHhcc
Confidence            99777776665555433   33454 444333333344455555544

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}

Probab=97.73  E-value=8.4e-06  Score=67.58  Aligned_cols=88  Identities=15%  Similarity=0.085  Sum_probs=59.2

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCC--cceeCCHHHHHhcccccCCccEEE
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE--IPVMSDLTMVLGSISQSKARAVVI  111 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~g--i~v~~~l~ell~~~~~~~~~DVVI  111 (163)
                      +..||+|+| +|.||+.+++.+.+..+++-+.++|++.  ....++..   ..+  +.+++++++++.      .+|+|+
T Consensus       134 ~~~~igiIG-~G~~g~~~a~~l~~~~g~~~V~v~dr~~--~~~~~l~~---~~~~~~~~~~~~~e~v~------~aDiVi  201 (312)
T 2i99_A          134 SSEVLCILG-AGVQAYSHYEIFTEQFSFKEVRIWNRTK--ENAEKFAD---TVQGEVRVCSSVQEAVA------GADVII  201 (312)
T ss_dssp             TCCEEEEEC-CSHHHHHHHHHHHHHCCCSEEEEECSSH--HHHHHHHH---HSSSCCEECSSHHHHHT------TCSEEE
T ss_pred             CCcEEEEEC-CcHHHHHHHHHHHHhCCCcEEEEEcCCH--HHHHHHHH---HhhCCeEEeCCHHHHHh------cCCEEE
Confidence            347899999 6999999999998765776667888643  22223321   122  566789999885      799999


Q ss_pred             EccCchhHHHHHH-HHHHcCCcEEE
Q 031216          112 DFTDASTVYDNVK-QATAFGMRSVV  135 (163)
Q Consensus       112 DfT~p~~~~~~~~-~al~~G~~vVi  135 (163)
                      .+| |.. .+.+. ..++.|.+++.
T Consensus       202 ~at-p~~-~~v~~~~~l~~g~~vi~  224 (312)
T 2i99_A          202 TVT-LAT-EPILFGEWVKPGAHINA  224 (312)
T ss_dssp             ECC-CCS-SCCBCGGGSCTTCEEEE
T ss_pred             EEe-CCC-CcccCHHHcCCCcEEEe
Confidence            665 432 22221 45678888876

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=97.70  E-value=0.00017  Score=60.91  Aligned_cols=101  Identities=13%  Similarity=0.107  Sum_probs=60.6

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC--------CcchhhhccCCCCCCcceeCCHHHHHhcccccC
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV--------GEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSK  105 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~--------g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~  105 (163)
                      .++||+|+| .|.||..++..+.+ .+.++. +.+++..        +....-+.+..-+.++.+++|+++++.      
T Consensus        28 ~~mkI~VIG-aG~mG~alA~~La~-~G~~V~-l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~t~d~~ea~~------   98 (356)
T 3k96_A           28 FKHPIAILG-AGSWGTALALVLAR-KGQKVR-LWSYESDHVDEMQAEGVNNRYLPNYPFPETLKAYCDLKASLE------   98 (356)
T ss_dssp             CCSCEEEEC-CSHHHHHHHHHHHT-TTCCEE-EECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEEESCHHHHHT------
T ss_pred             cCCeEEEEC-ccHHHHHHHHHHHH-CCCeEE-EEeCCHHHHHHHHHcCCCcccCCCCccCCCeEEECCHHHHHh------
Confidence            457999999 59999999999874 567765 4554311        110000111111224566789988874      


Q ss_pred             CccEEEEccCchhHHHHHHHH---HHcCCcEEEeCCCCCHH
Q 031216          106 ARAVVIDFTDASTVYDNVKQA---TAFGMRSVVYVPHIQLE  143 (163)
Q Consensus       106 ~~DVVIDfT~p~~~~~~~~~a---l~~G~~vVigttg~~~e  143 (163)
                      ++|+||.+..+....+.+...   +..+..+|.-+.|++.+
T Consensus        99 ~aDvVilaVp~~~~~~vl~~i~~~l~~~~ivvs~~kGi~~~  139 (356)
T 3k96_A           99 GVTDILIVVPSFAFHEVITRMKPLIDAKTRIAWGTKGLAKG  139 (356)
T ss_dssp             TCCEEEECCCHHHHHHHHHHHGGGCCTTCEEEECCCSCBTT
T ss_pred             cCCEEEECCCHHHHHHHHHHHHHhcCCCCEEEEEeCCCCcC
Confidence            899999555444334444332   33466677766677654

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=97.69  E-value=0.00012  Score=56.18  Aligned_cols=86  Identities=8%  Similarity=0.164  Sum_probs=53.2

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcce----eCC-HHHHHhcccccCCccEE
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV----MSD-LTMVLGSISQSKARAVV  110 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v----~~~-l~ell~~~~~~~~~DVV  110 (163)
                      |||.|+|++|.+|+.+++.+.+ .+.+++++..+...   ...+      .++.+    ..| .+++...+   .++|+|
T Consensus         1 M~ilItGatG~iG~~l~~~L~~-~g~~V~~~~R~~~~---~~~~------~~~~~~~~D~~d~~~~~~~~~---~~~d~v   67 (219)
T 3dqp_A            1 MKIFIVGSTGRVGKSLLKSLST-TDYQIYAGARKVEQ---VPQY------NNVKAVHFDVDWTPEEMAKQL---HGMDAI   67 (219)
T ss_dssp             CEEEEESTTSHHHHHHHHHHTT-SSCEEEEEESSGGG---SCCC------TTEEEEECCTTSCHHHHHTTT---TTCSEE
T ss_pred             CeEEEECCCCHHHHHHHHHHHH-CCCEEEEEECCccc---hhhc------CCceEEEecccCCHHHHHHHH---cCCCEE
Confidence            4899999999999999999984 58998876653211   1110      11111    123 33332221   479999


Q ss_pred             EEccCc----------hhHHHHHHHHHHcCC-cEE
Q 031216          111 IDFTDA----------STVYDNVKQATAFGM-RSV  134 (163)
Q Consensus       111 IDfT~p----------~~~~~~~~~al~~G~-~vV  134 (163)
                      |.+...          ......++.+.+.|+ ++|
T Consensus        68 i~~ag~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv  102 (219)
T 3dqp_A           68 INVSGSGGKSLLKVDLYGAVKLMQAAEKAEVKRFI  102 (219)
T ss_dssp             EECCCCTTSSCCCCCCHHHHHHHHHHHHTTCCEEE
T ss_pred             EECCcCCCCCcEeEeHHHHHHHHHHHHHhCCCEEE
Confidence            987632          124567777788885 455

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=97.69  E-value=0.00026  Score=62.13  Aligned_cols=114  Identities=10%  Similarity=0.075  Sum_probs=67.9

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT  114 (163)
                      +.||+|+| .|.||+.+++.+.+ .+.++. +.|++.  .....+.......++..+.|+++++..+   +++|+||-+.
T Consensus        15 ~~~IgvIG-lG~MG~~lA~~La~-~G~~V~-v~~r~~--~~~~~l~~~~~~~gi~~~~s~~e~v~~l---~~aDvVil~V   86 (480)
T 2zyd_A           15 KQQIGVVG-MAVMGRNLALNIES-RGYTVS-IFNRSR--EKTEEVIAENPGKKLVPYYTVKEFVESL---ETPRRILLMV   86 (480)
T ss_dssp             CBSEEEEC-CSHHHHHHHHHHHT-TTCCEE-EECSSH--HHHHHHHHHSTTSCEEECSSHHHHHHTB---CSSCEEEECS
T ss_pred             CCeEEEEc-cHHHHHHHHHHHHh-CCCeEE-EEeCCH--HHHHHHHhhCCCCCeEEeCCHHHHHhCC---CCCCEEEEEC
Confidence            46899999 69999999999974 578865 566542  1222222100012566778999987510   2499999555


Q ss_pred             Cch-hHHHHHHHH---HHcCCcEEEeCCCCCHHHHHHHHHHhhhcCe
Q 031216          115 DAS-TVYDNVKQA---TAFGMRSVVYVPHIQLETVSALSAFCDKASM  157 (163)
Q Consensus       115 ~p~-~~~~~~~~a---l~~G~~vVigttg~~~e~~~~L~~~A~~~~V  157 (163)
                      .+. .+.+.+...   ++.|.-+|..+++.. ....++.+..++.++
T Consensus        87 p~~~~v~~vl~~l~~~l~~g~iIId~s~g~~-~~t~~l~~~l~~~g~  132 (480)
T 2zyd_A           87 KAGAGTDAAIDSLKPYLDKGDIIIDGGNTFF-QDTIRRNRELSAEGF  132 (480)
T ss_dssp             CSSSHHHHHHHHHGGGCCTTCEEEECSCCCH-HHHHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHHHHhhcCCCCEEEECCCCCH-HHHHHHHHHHHHCCC
Confidence            442 344444433   334666666666653 333445555554444

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=97.67  E-value=0.0004  Score=61.33  Aligned_cols=113  Identities=12%  Similarity=0.069  Sum_probs=67.7

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhcc-CCCCCCcceeCCHHHHHhcccccCCccEEEEcc
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCD-MEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g-~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT  114 (163)
                      .||+|+| +|.||+.+++.+.+ .+.++. ++|++.  ..+..+.. .....++..+.|++++...   ..++|+||...
T Consensus        11 ~~IgvIG-lG~MG~~lA~~La~-~G~~V~-v~dr~~--~~~~~l~~~~~~~~gi~~~~s~~e~v~~---l~~aDvVil~V   82 (497)
T 2p4q_A           11 ADFGLIG-LAVMGQNLILNAAD-HGFTVC-AYNRTQ--SKVDHFLANEAKGKSIIGATSIEDFISK---LKRPRKVMLLV   82 (497)
T ss_dssp             CSEEEEC-CSHHHHHHHHHHHH-TTCCEE-EECSSS--HHHHHHHHTTTTTSSEECCSSHHHHHHT---SCSSCEEEECC
T ss_pred             CCEEEEe-eHHHHHHHHHHHHH-CCCEEE-EEeCCH--HHHHHHHcccccCCCeEEeCCHHHHHhc---CCCCCEEEEEc
Confidence            4799999 69999999999875 578875 667543  22233321 1000366677899998752   12499999555


Q ss_pred             Cch-hHHHHHHHH---HHcCCcEEEeCCCCCHHHHHHHHHHhhhcCe
Q 031216          115 DAS-TVYDNVKQA---TAFGMRSVVYVPHIQLETVSALSAFCDKASM  157 (163)
Q Consensus       115 ~p~-~~~~~~~~a---l~~G~~vVigttg~~~e~~~~L~~~A~~~~V  157 (163)
                      .+. .+.+.+...   ++.|.-+|..+++. +....++.+..++.++
T Consensus        83 p~~~~v~~vl~~l~~~l~~g~iIId~s~~~-~~~~~~l~~~l~~~g~  128 (497)
T 2p4q_A           83 KAGAPVDALINQIVPLLEKGDIIIDGGNSH-FPDSNRRYEELKKKGI  128 (497)
T ss_dssp             CSSHHHHHHHHHHGGGCCTTCEEEECSCCC-HHHHHHHHHHHHHTTC
T ss_pred             CChHHHHHHHHHHHHhCCCCCEEEECCCCC-hhHHHHHHHHHHHcCC
Confidence            442 344444333   33466666656555 3444555555555444

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=97.66  E-value=7.1e-05  Score=60.50  Aligned_cols=91  Identities=16%  Similarity=0.126  Sum_probs=57.0

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT  114 (163)
                      |+||+|+|++|+||+.+++.+.+ .+.++. ++|++.  .....+.    ..++.+. ++++++.      ++|+||.++
T Consensus        11 mm~I~iIG~tG~mG~~la~~l~~-~g~~V~-~~~r~~--~~~~~~~----~~g~~~~-~~~~~~~------~aDvVi~av   75 (286)
T 3c24_A           11 PKTVAILGAGGKMGARITRKIHD-SAHHLA-AIEIAP--EGRDRLQ----GMGIPLT-DGDGWID------EADVVVLAL   75 (286)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHH-SSSEEE-EECCSH--HHHHHHH----HTTCCCC-CSSGGGG------TCSEEEECS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHh-CCCEEE-EEECCH--HHHHHHH----hcCCCcC-CHHHHhc------CCCEEEEcC
Confidence            57999999449999999999875 578877 567532  1122221    1233333 5556553      899999777


Q ss_pred             CchhHHHHHHHHH---HcCCcEEEeCCCC
Q 031216          115 DASTVYDNVKQAT---AFGMRSVVYVPHI  140 (163)
Q Consensus       115 ~p~~~~~~~~~al---~~G~~vVigttg~  140 (163)
                      .|....+.+....   ..+.-+|..+++.
T Consensus        76 ~~~~~~~v~~~l~~~l~~~~ivv~~s~~~  104 (286)
T 3c24_A           76 PDNIIEKVAEDIVPRVRPGTIVLILDAAA  104 (286)
T ss_dssp             CHHHHHHHHHHHGGGSCTTCEEEESCSHH
T ss_pred             CchHHHHHHHHHHHhCCCCCEEEECCCCc
Confidence            7766555554433   2355555545555

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=97.63  E-value=0.0005  Score=54.93  Aligned_cols=99  Identities=12%  Similarity=0.182  Sum_probs=61.3

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCc--ceeCCHHHHHhcccccCCccEEEEc
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI--PVMSDLTMVLGSISQSKARAVVIDF  113 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi--~v~~~l~ell~~~~~~~~~DVVIDf  113 (163)
                      +||+|+| +|.||+.+++.+.+ .+.++.+ +|+..  .....+.    ..++  .++++++++ .      ++|+||.+
T Consensus         1 m~i~iiG-~G~~G~~~a~~l~~-~g~~V~~-~~~~~--~~~~~~~----~~g~~~~~~~~~~~~-~------~~D~vi~a   64 (279)
T 2f1k_A            1 MKIGVVG-LGLIGASLAGDLRR-RGHYLIG-VSRQQ--STCEKAV----ERQLVDEAGQDLSLL-Q------TAKIIFLC   64 (279)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHH-TTCEEEE-ECSCH--HHHHHHH----HTTSCSEEESCGGGG-T------TCSEEEEC
T ss_pred             CEEEEEc-CcHHHHHHHHHHHH-CCCEEEE-EECCH--HHHHHHH----hCCCCccccCCHHHh-C------CCCEEEEE
Confidence            4899999 69999999999875 5678664 56532  1122221    1233  246788777 4      89999977


Q ss_pred             cCchhHHHHHHHHHH---cCCcEEEeCCCCCHHHHHHHHHH
Q 031216          114 TDASTVYDNVKQATA---FGMRSVVYVPHIQLETVSALSAF  151 (163)
Q Consensus       114 T~p~~~~~~~~~al~---~G~~vVigttg~~~e~~~~L~~~  151 (163)
                      +.|....+.+.....   .+..+ +-+.+.+....+.+.+.
T Consensus        65 v~~~~~~~~~~~l~~~~~~~~~v-v~~~~~~~~~~~~~~~~  104 (279)
T 2f1k_A           65 TPIQLILPTLEKLIPHLSPTAIV-TDVASVKTAIAEPASQL  104 (279)
T ss_dssp             SCHHHHHHHHHHHGGGSCTTCEE-EECCSCCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhhCCCCCEE-EECCCCcHHHHHHHHHH
Confidence            776655565554432   34444 43555665555555544

>3h9e_O Glyceraldehyde-3-phosphate dehydrogenase, testis-; oxidoreductase, structural genomics, structural genomics CON SGC, glycolysis, NAD; HET: NAD; 1.72A {Homo sapiens} PDB: 3pfw_O* 2vyn_D* 2vyv_D*

Probab=97.63  E-value=0.00018  Score=61.17  Aligned_cols=100  Identities=22%  Similarity=0.280  Sum_probs=63.7

Q ss_pred             CCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC--------------CCCcchhhh--cc----CCCCCCccee-
Q 031216           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH--------------SVGEDIGMV--CD----MEQPLEIPVM-   91 (163)
Q Consensus        33 ~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~--------------~~g~~~~~l--~g----~~~~~gi~v~-   91 (163)
                      .+|+||+|.| .||+||.++|.+...+ ++++++-|+.              ..|+=.+++  .+    +. ...+.++ 
T Consensus         5 ~~~~kvgInG-FGRIGrlv~R~~~~~~-veivainDp~~d~~~~a~l~~yDS~hG~f~~~v~~~~~~l~i~-Gk~I~v~~   81 (346)
T 3h9e_O            5 ARELTVGING-FGRIGRLVLRACMEKG-VKVVAVNDPFIDPEYMVYMFKYDSTHGRYKGSVEFRNGQLVVD-NHEISVYQ   81 (346)
T ss_dssp             -CCCEEEEEC-CSHHHHHHHHHHHHTT-CEEEEEECTTCCHHHHHHHHHCCTTTCSCSSCEEEETTEEEET-TEEEEEEC
T ss_pred             CCeeEEEEEC-CChHHHHHHHHHHhCC-CEEEEEeCCCCChhHhcccccccCCCCCCCCcEEEcCCEEEEC-CEEEEEEe
Confidence            4679999999 7999999999988765 9999998841              012100100  00    00 1124444 


Q ss_pred             -CCHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCC-cEEEeCC
Q 031216           92 -SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGM-RSVVYVP  138 (163)
Q Consensus        92 -~~l~ell~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~-~vVigtt  138 (163)
                       .+++++-..   +..+|+|++.|-.....+.+...++.|. .||+-.|
T Consensus        82 e~dp~~i~W~---~~gvDiVlesTG~f~s~e~a~~hl~aGAkkVVIsap  127 (346)
T 3h9e_O           82 CKEPKQIPWR---AVGSPYVVESTGVYLSIQAASDHISAGAQRVVISAP  127 (346)
T ss_dssp             CSSGGGCCGG---GGTSCEEEECSSSCCSHHHHHHHHHTTCSEEEESSC
T ss_pred             cCChhhCCcc---cccccEEEEeccccCCHHHHHHHHHcCCCEEEECCC
Confidence             345444321   2379999987766667888889999995 4666444

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=97.61  E-value=0.00027  Score=61.93  Aligned_cols=114  Identities=11%  Similarity=0.094  Sum_probs=66.7

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhc---cCC-CCCCcceeCCHHHHHhcccccCCccEEE
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC---DME-QPLEIPVMSDLTMVLGSISQSKARAVVI  111 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~---g~~-~~~gi~v~~~l~ell~~~~~~~~~DVVI  111 (163)
                      +||+|+| .|.||+.+++.+.+ .+.++. ++|++.  .....+.   |.. ...++..+.|++++...+   +++|+||
T Consensus         2 MkIgVIG-~G~mG~~lA~~La~-~G~~V~-v~dr~~--~~~~~l~~~~g~~~~~~~i~~~~~~~e~v~~l---~~aDvVi   73 (478)
T 1pgj_A            2 MDVGVVG-LGVMGANLALNIAE-KGFKVA-VFNRTY--SKSEEFMKANASAPFAGNLKAFETMEAFAASL---KKPRKAL   73 (478)
T ss_dssp             BSEEEEC-CSHHHHHHHHHHHH-TTCCEE-EECSSH--HHHHHHHHHTTTSTTGGGEEECSCHHHHHHHB---CSSCEEE
T ss_pred             CEEEEEC-hHHHHHHHHHHHHH-CCCEEE-EEeCCH--HHHHHHHHhcCCCCCCCCeEEECCHHHHHhcc---cCCCEEE
Confidence            5899999 69999999999875 577754 667532  1112221   100 011256678999887521   2599999


Q ss_pred             EccCch-hHHHHHH---HHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeE
Q 031216          112 DFTDAS-TVYDNVK---QATAFGMRSVVYVPHIQLETVSALSAFCDKASMV  158 (163)
Q Consensus       112 DfT~p~-~~~~~~~---~al~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv  158 (163)
                      .+..+. .+.+.+.   ..++.|..+|...++.. ....++.+..++.++.
T Consensus        74 laVp~~~~v~~vl~~l~~~l~~g~iIId~sng~~-~~~~~l~~~l~~~g~~  123 (478)
T 1pgj_A           74 ILVQAGAATDSTIEQLKKVFEKGDILVDTGNAHF-KDQGRRAQQLEAAGLR  123 (478)
T ss_dssp             ECCCCSHHHHHHHHHHHHHCCTTCEEEECCCCCH-HHHHHHHHHHHTTTCE
T ss_pred             EecCChHHHHHHHHHHHhhCCCCCEEEECCCCCh-HHHHHHHHHHHHCCCe
Confidence            666543 3333333   34456776666555553 3345555555555543

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=97.61  E-value=0.00025  Score=58.37  Aligned_cols=35  Identities=26%  Similarity=0.188  Sum_probs=30.8

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~   69 (163)
                      |+||.|+|++|.+|+.+++.+.+.++.+++++..+
T Consensus        24 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~   58 (372)
T 3slg_A           24 AKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQ   58 (372)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESC
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCC
Confidence            57999999999999999999998778999877553

>3v1y_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosol; rossmann fold; HET: NAD; 1.86A {Oryza sativa japonica group} PDB: 3e5r_O* 3e6a_O

Probab=97.55  E-value=0.00011  Score=62.30  Aligned_cols=99  Identities=18%  Similarity=0.189  Sum_probs=63.9

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC--------------CCCcchh-hh-------ccCCCCCCccee-
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH--------------SVGEDIG-MV-------CDMEQPLEIPVM-   91 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~--------------~~g~~~~-~l-------~g~~~~~gi~v~-   91 (163)
                      |+||+|.| .||+||.+.|.+.+.+++++|++-|..              ..|+=.+ ++       +-+. ...+.++ 
T Consensus         3 ~~kv~ING-fGrIGr~v~R~~~~~~~~~ivaiNd~~~d~~~~a~l~kyDS~hG~f~~~~v~~~~~~~l~i~-Gk~I~v~~   80 (337)
T 3v1y_O            3 KIKIGING-FGRIGRLVARVALQSEDVELVAVNDPFITTDYMTYMFKYDTVHGQWKHSDIKIKDSKTLLLG-EKPVTVFG   80 (337)
T ss_dssp             CEEEEEEC-CSHHHHHHHHHHHTCSSEEEEEEECTTSCHHHHHHHHHCCTTTCCCCSSCEEEEETTEEEET-TEEEEEEC
T ss_pred             ceEEEEEC-CChHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHhhhccCCCcccCceEEEcCCcEEEEC-CEEEEEEE
Confidence            68999999 799999999999988999999998741              0121111 00       0000 1124444 


Q ss_pred             -CCHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCc-EEEeCC
Q 031216           92 -SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMR-SVVYVP  138 (163)
Q Consensus        92 -~~l~ell~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~-vVigtt  138 (163)
                       .+++++-..   +..+|+|++.|-.....+.+...++.|.. ||+-.|
T Consensus        81 e~dp~~i~w~---~~gvDiVlesTG~f~s~e~a~~hl~aGAkkViIsap  126 (337)
T 3v1y_O           81 IRNPDEIPWA---EAGAEYVVESTGVFTDKEKAAAHLKGGAKKVVISAP  126 (337)
T ss_dssp             CSSGGGCCHH---HHTCCEEEECSSSCCSHHHHTHHHHTTCCEEEESSC
T ss_pred             ecCcccCCcc---ccCCcEEEEeccccCCHHHHHHHHHcCCCEEEECCC
Confidence             345443221   13899999877666677888888999964 555433

>3doc_A Glyceraldehyde 3-phosphate dehydrogenase; ssgcid, structural genomics, PSI, protein structure initiative; HET: NAD; 2.40A {Brucella melitensis biovar ABORTUS2308} PDB: 3l0d_A*

Probab=97.54  E-value=0.00028  Score=59.73  Aligned_cols=99  Identities=21%  Similarity=0.226  Sum_probs=63.6

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhc--CCcEEEEEEecC-------------CCCcchhhh------ccCCCCCCccee--
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDSH-------------SVGEDIGMV------CDMEQPLEIPVM--   91 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~--~~~eLvgvid~~-------------~~g~~~~~l------~g~~~~~gi~v~--   91 (163)
                      ++||+|.| .||+||.+.|.+.+.  +++++|++-|..             ..|+=.+++      +-+. ...+.++  
T Consensus         2 ~~kv~ING-fGrIGr~v~Ra~~~~~~~~~~ivaiNd~~d~~~~a~l~kyDS~hG~f~~~v~~~~~~l~i~-Gk~I~v~~e   79 (335)
T 3doc_A            2 AVRVAING-FGRIGRNILRAIVESGRTDIQVVAINDLGPVETNAHLLRYDSVHGRFPKEVEVAGDTIDVG-YGPIKVHAV   79 (335)
T ss_dssp             CEEEEEEC-CSHHHHHHHHHHHHTTCCSEEEEEEECSSCHHHHHHHHHEETTTEECSSCCEECSSEEESS-SSEEEEECC
T ss_pred             CEEEEEEC-CCcHHHHHHHHHHhccCCCeEEEEEeCCCCHHHHHHHhcccCCCCCCCCeEEEecCEEEEC-CEEEEEEee
Confidence            58999999 799999999998877  789999998741             011100000      0010 1234454  


Q ss_pred             CCHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCc-EEEeCC
Q 031216           92 SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMR-SVVYVP  138 (163)
Q Consensus        92 ~~l~ell~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~-vVigtt  138 (163)
                      .+++++-..   +..+|+|++.|-.....+.+...++.|.. ||+-.|
T Consensus        80 ~dp~~i~w~---~~gvDiVlesTG~f~s~e~a~~hl~aGAkkViIsap  124 (335)
T 3doc_A           80 RNPAELPWK---EENVDIALECTGIFTSRDKAALHLEAGAKRVIVSAP  124 (335)
T ss_dssp             SSTTSSCTT---TTTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSC
T ss_pred             ccccccccc---ccCCCEEEEccCccCCHHHHHHHHHcCCCEEEECCC
Confidence            345444321   24899999877666677888888999964 555433

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=97.53  E-value=0.00039  Score=54.12  Aligned_cols=90  Identities=12%  Similarity=0.145  Sum_probs=52.5

Q ss_pred             CCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcce-------eCCHHHHHhccccc
Q 031216           32 PQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-------MSDLTMVLGSISQS  104 (163)
Q Consensus        32 ~~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v-------~~~l~ell~~~~~~  104 (163)
                      +..|.+|.|+|++|.+|+.+++.+.+....+++++..+..   +..++.    ..++.+       .++++++++     
T Consensus        20 ~~~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~---~~~~~~----~~~~~~~~~Dl~d~~~~~~~~~-----   87 (236)
T 3qvo_A           20 QGHMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPA---KIHKPY----PTNSQIIMGDVLNHAALKQAMQ-----   87 (236)
T ss_dssp             --CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGG---GSCSSC----CTTEEEEECCTTCHHHHHHHHT-----
T ss_pred             cCcccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChh---hhcccc----cCCcEEEEecCCCHHHHHHHhc-----
Confidence            3457889999999999999999998543378876554321   111111    112211       123445553     


Q ss_pred             CCccEEEEccCchhH----HHHHHHHHHcCCc-EE
Q 031216          105 KARAVVIDFTDASTV----YDNVKQATAFGMR-SV  134 (163)
Q Consensus       105 ~~~DVVIDfT~p~~~----~~~~~~al~~G~~-vV  134 (163)
                       .+|+||....+...    ...+..+.+.|.. +|
T Consensus        88 -~~D~vv~~a~~~~~~~~~~~~~~~~~~~~~~~iV  121 (236)
T 3qvo_A           88 -GQDIVYANLTGEDLDIQANSVIAAMKACDVKRLI  121 (236)
T ss_dssp             -TCSEEEEECCSTTHHHHHHHHHHHHHHTTCCEEE
T ss_pred             -CCCEEEEcCCCCchhHHHHHHHHHHHHcCCCEEE
Confidence             78999976543322    2345566677754 54

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=97.53  E-value=0.0002  Score=59.66  Aligned_cols=97  Identities=13%  Similarity=0.179  Sum_probs=58.8

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhc----------cCCCCCCcceeCCHHHHHhcccccC
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC----------DMEQPLEIPVMSDLTMVLGSISQSK  105 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~----------g~~~~~gi~v~~~l~ell~~~~~~~  105 (163)
                      +||+|+| .|.||..++..+. ..+.++. ++|++.  ..+..+.          +.....++.+++++++++.      
T Consensus        16 ~kI~iIG-~G~mG~~la~~L~-~~G~~V~-~~~r~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------   84 (366)
T 1evy_A           16 NKAVVFG-SGAFGTALAMVLS-KKCREVC-VWHMNE--EEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYN------   84 (366)
T ss_dssp             EEEEEEC-CSHHHHHHHHHHT-TTEEEEE-EECSCH--HHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHT------
T ss_pred             CeEEEEC-CCHHHHHHHHHHH-hCCCEEE-EEECCH--HHHHHHHHcCcccccccccccccceeeeCCHHHHHc------
Confidence            3999999 5999999999987 4567765 456431  1111111          0000124556688888774      


Q ss_pred             CccEEEEccCchhHHHHHH-------HHHHc-CCcEEEeCCCCCHH
Q 031216          106 ARAVVIDFTDASTVYDNVK-------QATAF-GMRSVVYVPHIQLE  143 (163)
Q Consensus       106 ~~DVVIDfT~p~~~~~~~~-------~al~~-G~~vVigttg~~~e  143 (163)
                      .+|+||.+..+....+.+.       ..+.. +..+|.-+.|++.+
T Consensus        85 ~aDvVilav~~~~~~~v~~~~~~gl~~~l~~~~~ivv~~~~gi~~~  130 (366)
T 1evy_A           85 GAEIILFVIPTQFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIERS  130 (366)
T ss_dssp             TCSSEEECCCHHHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCTT
T ss_pred             CCCEEEECCChHHHHHHHHHhHHHHHHhcCccCCEEEEECCcCCCc
Confidence            8999996665544444333       34555 77777655576554

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=97.49  E-value=0.0013  Score=57.98  Aligned_cols=116  Identities=11%  Similarity=0.135  Sum_probs=67.9

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCC-CCCCcceeCCHHHHHhcccccCCccEEEE
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDME-QPLEIPVMSDLTMVLGSISQSKARAVVID  112 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~-~~~gi~v~~~l~ell~~~~~~~~~DVVID  112 (163)
                      .|+||+|+| +|.||..+++.+.+ .+.+++ +.|++.  .....+.... ....+..+.+++++.+.+   .++|+||.
T Consensus         3 ~~~kIgiIG-lG~MG~~lA~~L~~-~G~~V~-v~dr~~--~~~~~l~~~g~~g~~i~~~~s~~e~v~~l---~~aDvVil   74 (484)
T 4gwg_A            3 AQADIALIG-LAVMGQNLILNMND-HGFVVC-AFNRTV--SKVDDFLANEAKGTKVVGAQSLKEMVSKL---KKPRRIIL   74 (484)
T ss_dssp             CCBSEEEEC-CSHHHHHHHHHHHH-TTCCEE-EECSST--HHHHHHHHTTTTTSSCEECSSHHHHHHTB---CSSCEEEE
T ss_pred             CCCEEEEEC-hhHHHHHHHHHHHH-CCCEEE-EEeCCH--HHHHHHHhcccCCCceeccCCHHHHHhhc---cCCCEEEE
Confidence            467999999 69999999999875 578876 567543  2223332110 011233468999987621   36999985


Q ss_pred             ccCch-hHHHHHHH---HHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeE
Q 031216          113 FTDAS-TVYDNVKQ---ATAFGMRSVVYVPHIQLETVSALSAFCDKASMV  158 (163)
Q Consensus       113 fT~p~-~~~~~~~~---al~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv  158 (163)
                      ...+. .+.+.+..   .++.|.-+|-+++.. +.+..++.+..++.++-
T Consensus        75 ~Vp~~~~v~~vl~~l~~~L~~g~iIId~st~~-~~~t~~~~~~l~~~Gi~  123 (484)
T 4gwg_A           75 LVKAGQAVDDFIEKLVPLLDTGDIIIDGGNSE-YRDTTRRCRDLKAKGIL  123 (484)
T ss_dssp             CSCSSHHHHHHHHHHGGGCCTTCEEEECSCCC-HHHHHHHHHHHHHTTCE
T ss_pred             ecCChHHHHHHHHHHHHhcCCCCEEEEcCCCC-chHHHHHHHHHHhhccc
Confidence            55443 33333333   344566666655555 33334454555555553

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=97.48  E-value=0.002  Score=52.48  Aligned_cols=90  Identities=13%  Similarity=0.193  Sum_probs=56.5

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEc
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDf  113 (163)
                      .+.||+|+|++|.||..+++.+.+ .+.++. ++|+...                   .++++++.      .+|+||.+
T Consensus        20 ~~~~I~iIGg~G~mG~~la~~l~~-~G~~V~-~~~~~~~-------------------~~~~~~~~------~aDvVila   72 (298)
T 2pv7_A           20 DIHKIVIVGGYGKLGGLFARYLRA-SGYPIS-ILDREDW-------------------AVAESILA------NADVVIVS   72 (298)
T ss_dssp             TCCCEEEETTTSHHHHHHHHHHHT-TTCCEE-EECTTCG-------------------GGHHHHHT------TCSEEEEC
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHh-CCCeEE-EEECCcc-------------------cCHHHHhc------CCCEEEEe
Confidence            346899999459999999999874 567765 3454320                   14556653      89999977


Q ss_pred             cCchhHHHHHHHHH---HcCCcEEEeCCCCCHHHHHHHHHH
Q 031216          114 TDASTVYDNVKQAT---AFGMRSVVYVPHIQLETVSALSAF  151 (163)
Q Consensus       114 T~p~~~~~~~~~al---~~G~~vVigttg~~~e~~~~L~~~  151 (163)
                      ..|....+.+....   ..+. +|+-.++......+.+.+.
T Consensus        73 vp~~~~~~vl~~l~~~l~~~~-iv~~~~svk~~~~~~~~~~  112 (298)
T 2pv7_A           73 VPINLTLETIERLKPYLTENM-LLADLTSVKREPLAKMLEV  112 (298)
T ss_dssp             SCGGGHHHHHHHHGGGCCTTS-EEEECCSCCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhhcCCCc-EEEECCCCCcHHHHHHHHh
Confidence            76666666555443   2343 5554555555444555443

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=97.47  E-value=8.7e-05  Score=54.05  Aligned_cols=87  Identities=10%  Similarity=0.120  Sum_probs=55.0

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT  114 (163)
                      ..||+|+| +|.||+.+++.+.. .+++ +.++++..  .+..++.... ...+..++++++++.      ++|+||.+|
T Consensus        21 ~~~v~iiG-~G~iG~~~a~~l~~-~g~~-v~v~~r~~--~~~~~~a~~~-~~~~~~~~~~~~~~~------~~Divi~at   88 (144)
T 3oj0_A           21 GNKILLVG-NGMLASEIAPYFSY-PQYK-VTVAGRNI--DHVRAFAEKY-EYEYVLINDIDSLIK------NNDVIITAT   88 (144)
T ss_dssp             CCEEEEEC-CSHHHHHHGGGCCT-TTCE-EEEEESCH--HHHHHHHHHH-TCEEEECSCHHHHHH------TCSEEEECS
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHh-CCCE-EEEEcCCH--HHHHHHHHHh-CCceEeecCHHHHhc------CCCEEEEeC
Confidence            46899999 59999999998875 7899 77888643  1222222100 112234678888885      899999877


Q ss_pred             CchhHHHHHHHHHHcCCcEE
Q 031216          115 DASTVYDNVKQATAFGMRSV  134 (163)
Q Consensus       115 ~p~~~~~~~~~al~~G~~vV  134 (163)
                      ...... .....++.|..++
T Consensus        89 ~~~~~~-~~~~~l~~g~~vi  107 (144)
T 3oj0_A           89 SSKTPI-VEERSLMPGKLFI  107 (144)
T ss_dssp             CCSSCS-BCGGGCCTTCEEE
T ss_pred             CCCCcE-eeHHHcCCCCEEE
Confidence            433211 1123456677766

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=97.46  E-value=0.00041  Score=55.80  Aligned_cols=88  Identities=16%  Similarity=0.216  Sum_probs=54.9

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCC-CCCCcceeCCHHHHHhcccccCCccEEEEc
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDME-QPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~-~~~gi~v~~~l~ell~~~~~~~~~DVVIDf  113 (163)
                      ++||.|+|++|.+|+.+++.+.+ .+.++.++..+ . +.. . +.+.. ...++. .+++++++.      ++|+||.+
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~-~g~~V~~~~r~-~-~~~-~-~~~~~~~~~Dl~-~~~~~~~~~------~~d~Vih~   69 (311)
T 3m2p_A            2 SLKIAVTGGTGFLGQYVVESIKN-DGNTPIILTRS-I-GNK-A-INDYEYRVSDYT-LEDLINQLN------DVDAVVHL   69 (311)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESC-C-C-------CCEEEECCCC-HHHHHHHTT------TCSEEEEC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHh-CCCEEEEEeCC-C-Ccc-c-CCceEEEEcccc-HHHHHHhhc------CCCEEEEc
Confidence            57999999999999999999985 57888876554 2 111 1 11110 012232 344556653      89999987


Q ss_pred             cCch--------------hHHHHHHHHHHcCCc-EE
Q 031216          114 TDAS--------------TVYDNVKQATAFGMR-SV  134 (163)
Q Consensus       114 T~p~--------------~~~~~~~~al~~G~~-vV  134 (163)
                      ..+.              .....+..+.+.|+. +|
T Consensus        70 a~~~~~~~~~~~~~~n~~~~~~ll~a~~~~~~~r~v  105 (311)
T 3m2p_A           70 AATRGSQGKISEFHDNEILTQNLYDACYENNISNIV  105 (311)
T ss_dssp             CCCCCSSSCGGGTHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred             cccCCCCChHHHHHHHHHHHHHHHHHHHHcCCCEEE
Confidence            5321              224566777888876 54

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=97.45  E-value=0.0001  Score=61.02  Aligned_cols=98  Identities=10%  Similarity=0.167  Sum_probs=58.2

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhc--cCC-----CCCCcceeCCHHHHHhcccccCC
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC--DME-----QPLEIPVMSDLTMVLGSISQSKA  106 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~--g~~-----~~~gi~v~~~l~ell~~~~~~~~  106 (163)
                      .++||+|+| .|.||..++..+.+ .+.++. +++++.  ..+..+.  +..     ...++.+++++++ .      ..
T Consensus        13 ~~~kI~iIG-~G~mG~ala~~L~~-~G~~V~-~~~r~~--~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~-~------~~   80 (335)
T 1z82_A           13 MEMRFFVLG-AGSWGTVFAQMLHE-NGEEVI-LWARRK--EIVDLINVSHTSPYVEESKITVRATNDLEE-I------KK   80 (335)
T ss_dssp             -CCEEEEEC-CSHHHHHHHHHHHH-TTCEEE-EECSSH--HHHHHHHHHSCBTTBTTCCCCSEEESCGGG-C------CT
T ss_pred             cCCcEEEEC-cCHHHHHHHHHHHh-CCCeEE-EEeCCH--HHHHHHHHhCCcccCCCCeeeEEEeCCHHH-h------cC
Confidence            568999999 59999999999874 577765 456431  1111111  100     0113566788887 5      38


Q ss_pred             ccEEEEccCchhHHHHHHHHHHcCCcEEEeCCCCCHH
Q 031216          107 RAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLE  143 (163)
Q Consensus       107 ~DVVIDfT~p~~~~~~~~~al~~G~~vVigttg~~~e  143 (163)
                      +|+||-+..+..+.+.+......+..+|.-+.|++.+
T Consensus        81 aDvVil~vk~~~~~~v~~~l~~~~~~vv~~~nGi~~~  117 (335)
T 1z82_A           81 EDILVIAIPVQYIREHLLRLPVKPSMVLNLSKGIEIK  117 (335)
T ss_dssp             TEEEEECSCGGGHHHHHTTCSSCCSEEEECCCCCCTT
T ss_pred             CCEEEEECCHHHHHHHHHHhCcCCCEEEEEeCCCCCC
Confidence            9999966655444444432211566666655576553

>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0

Probab=97.43  E-value=0.00022  Score=56.60  Aligned_cols=79  Identities=14%  Similarity=0.160  Sum_probs=52.9

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEccC
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT~  115 (163)
                      +||.|+|++|.+|+.+++.+.+ .+.++.++....      .++         .-.+++++++..    .++|+||.+..
T Consensus         6 m~ilVtGatG~iG~~l~~~L~~-~g~~V~~~~r~~------~D~---------~d~~~~~~~~~~----~~~d~vi~~a~   65 (287)
T 3sc6_A            6 ERVIITGANGQLGKQLQEELNP-EEYDIYPFDKKL------LDI---------TNISQVQQVVQE----IRPHIIIHCAA   65 (287)
T ss_dssp             EEEEEESTTSHHHHHHHHHSCT-TTEEEEEECTTT------SCT---------TCHHHHHHHHHH----HCCSEEEECCC
T ss_pred             eEEEEECCCCHHHHHHHHHHHh-CCCEEEEecccc------cCC---------CCHHHHHHHHHh----cCCCEEEECCc
Confidence            4999999999999999999875 588888654321      111         112355666652    37999998752


Q ss_pred             chh------------------HHHHHHHHHHcCCcEE
Q 031216          116 AST------------------VYDNVKQATAFGMRSV  134 (163)
Q Consensus       116 p~~------------------~~~~~~~al~~G~~vV  134 (163)
                      ...                  ....+..+.+.|.++|
T Consensus        66 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~v  102 (287)
T 3sc6_A           66 YTKVDQAEKERDLAYVINAIGARNVAVASQLVGAKLV  102 (287)
T ss_dssp             CCCHHHHTTCHHHHHHHHTHHHHHHHHHHHHHTCEEE
T ss_pred             ccChHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCeEE
Confidence            211                  2346677788888766

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=97.42  E-value=0.00021  Score=60.05  Aligned_cols=116  Identities=17%  Similarity=0.198  Sum_probs=62.0

Q ss_pred             ecccccccccccceeeeccCCCCCCCeeEEEEcCCCHHHHHHHHHHHhcCC-------cEEEEEEecCCC--Cc-chhhh
Q 031216           10 CRMHHISQNVKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARG-------MEVAGAIDSHSV--GE-DIGMV   79 (163)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~irV~VvGa~G~mG~~i~~~i~~~~~-------~eLvgvid~~~~--g~-~~~~l   79 (163)
                      -.-||.-.|.    |++-    +..|+||+|+| .|.||..++..+.+. +       .++. +++++..  ++ ....+
T Consensus         4 ~~~~~~~~~~----~~~~----~~~~~kI~iIG-aG~mG~alA~~L~~~-G~~~~~~~~~V~-~~~r~~~~~~~~~~~~l   72 (375)
T 1yj8_A            4 HHHHHMYRNL----FDKL----KDGPLKISILG-SGNWASAISKVVGTN-AKNNYLFENEVR-MWIRDEFVNGERMVDII   72 (375)
T ss_dssp             ------CCSH----HHHH----HHSCBCEEEEC-CSHHHHHHHHHHHHH-HHHCTTBCSCEE-EECCSCC---CCHHHHH
T ss_pred             chhHHHHHHH----HhcC----ccCCCEEEEEC-cCHHHHHHHHHHHHc-CCccCCCCCeEE-EEECChhhhhHHHHHHH
Confidence            3446666664    4432    23467999999 599999999988753 4       5554 4554321  00 11111


Q ss_pred             c----------cCCCCCCcceeCCHHHHHhcccccCCccEEEEccCchhHHHHHHHHHH-------cCCcEEEeCCCCCH
Q 031216           80 C----------DMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATA-------FGMRSVVYVPHIQL  142 (163)
Q Consensus        80 ~----------g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT~p~~~~~~~~~al~-------~G~~vVigttg~~~  142 (163)
                      .          +..-+.++..++|+++++.      ++|+||.+..+....+.+.....       .+..+|.-+.|++.
T Consensus        73 ~~~~~~~~~~~~~~~~~~i~~~~~~~ea~~------~aDvVilav~~~~~~~vl~~i~~~~~~~l~~~~ivvs~~~Gi~~  146 (375)
T 1yj8_A           73 NNKHENTKYLKGVPLPHNIVAHSDLASVIN------DADLLIFIVPCQYLESVLASIKESESIKIASHAKAISLTKGFIV  146 (375)
T ss_dssp             HHHCBCTTTSTTCBCCTTEEEESSTHHHHT------TCSEEEECCCHHHHHHHHHHHTC---CCCCTTCEEEECCCSCEE
T ss_pred             HhcCcccccCCcccCcCCeEEECCHHHHHc------CCCEEEEcCCHHHHHHHHHHHhhhhhccCCCCCEEEEeCCcccc
Confidence            0          1000124566788888774      89999955554444444443222       35556665557654

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=97.41  E-value=0.0016  Score=56.64  Aligned_cols=92  Identities=12%  Similarity=0.187  Sum_probs=56.3

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhc-cCC---------------CCCCcceeCCHHHHHh
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC-DME---------------QPLEIPVMSDLTMVLG   99 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~-g~~---------------~~~gi~v~~~l~ell~   99 (163)
                      +||+|+| +|+||..++..+.+ .+.+++ ++|++.  ..+..+. +..               ...++..++|+++++.
T Consensus         3 mkI~VIG-~G~vG~~lA~~La~-~G~~V~-~~D~~~--~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~t~d~~ea~~   77 (450)
T 3gg2_A            3 LDIAVVG-IGYVGLVSATCFAE-LGANVR-CIDTDR--NKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRFGTEIEQAVP   77 (450)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHH-TTCEEE-EECSCH--HHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEEESCHHHHGG
T ss_pred             CEEEEEC-cCHHHHHHHHHHHh-cCCEEE-EEECCH--HHHHHHHcCCCcccCCCHHHHHHhhcccCcEEEECCHHHHHh
Confidence            7999999 69999999999874 588888 567532  1111111 000               0123566789998875


Q ss_pred             cccccCCccEEEEccC-ch---------hHHH---HHHHHHHcCCcEEEeCC
Q 031216          100 SISQSKARAVVIDFTD-AS---------TVYD---NVKQATAFGMRSVVYVP  138 (163)
Q Consensus       100 ~~~~~~~~DVVIDfT~-p~---------~~~~---~~~~al~~G~~vVigtt  138 (163)
                            ++|+||.+.. |.         ...+   .+...++.|.-||..+|
T Consensus        78 ------~aDvViiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~g~iVV~~ST  123 (450)
T 3gg2_A           78 ------EADIIFIAVGTPAGEDGSADMSYVLDAARSIGRAMSRYILIVTKST  123 (450)
T ss_dssp             ------GCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECSC
T ss_pred             ------cCCEEEEEcCCCcccCCCcChHHHHHHHHHHHhhCCCCCEEEEeee
Confidence                  8999986542 31         2223   33344556766666554

>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2

Probab=97.41  E-value=0.00037  Score=55.36  Aligned_cols=85  Identities=19%  Similarity=0.243  Sum_probs=53.4

Q ss_pred             CCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEE
Q 031216           31 PPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVV  110 (163)
Q Consensus        31 ~~~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVV  110 (163)
                      |++...||.|+|++|.+|+.+++.+.+ .+.+++++ ++..     .++.         -.+++++++..    .++|+|
T Consensus         8 ~~~~~~~vlVtGatG~iG~~l~~~L~~-~g~~V~~~-~r~~-----~Dl~---------d~~~~~~~~~~----~~~d~v   67 (292)
T 1vl0_A            8 HHHHHMKILITGANGQLGREIQKQLKG-KNVEVIPT-DVQD-----LDIT---------NVLAVNKFFNE----KKPNVV   67 (292)
T ss_dssp             ----CEEEEEESTTSHHHHHHHHHHTT-SSEEEEEE-CTTT-----CCTT---------CHHHHHHHHHH----HCCSEE
T ss_pred             cccccceEEEECCCChHHHHHHHHHHh-CCCeEEec-cCcc-----CCCC---------CHHHHHHHHHh----cCCCEE
Confidence            566789999999999999999999875 57888764 4321     1111         01345566642    279999


Q ss_pred             EEccCch------------------hHHHHHHHHHHcCCcEEE
Q 031216          111 IDFTDAS------------------TVYDNVKQATAFGMRSVV  135 (163)
Q Consensus       111 IDfT~p~------------------~~~~~~~~al~~G~~vVi  135 (163)
                      |.+..+.                  .....+..+.+.|+++|.
T Consensus        68 ih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~iv~  110 (292)
T 1vl0_A           68 INCAAHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSVGAEIVQ  110 (292)
T ss_dssp             EECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHTCEEEE
T ss_pred             EECCccCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCeEEE
Confidence            9875321                  123455667777877663

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=97.41  E-value=0.00018  Score=57.02  Aligned_cols=100  Identities=14%  Similarity=0.145  Sum_probs=56.9

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCC-cEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARG-MEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~-~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT  114 (163)
                      +||+|+| .|.||+.+++.+.+. + .++ .++|++.  .....+..   ..++.+++++++++       ++|+||.++
T Consensus         1 m~i~iiG-~G~mG~~~a~~l~~~-g~~~v-~~~~r~~--~~~~~~~~---~~g~~~~~~~~~~~-------~~D~vi~~v   65 (263)
T 1yqg_A            1 MNVYFLG-GGNMAAAVAGGLVKQ-GGYRI-YIANRGA--EKRERLEK---ELGVETSATLPELH-------SDDVLILAV   65 (263)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHHH-CSCEE-EEECSSH--HHHHHHHH---HTCCEEESSCCCCC-------TTSEEEECS
T ss_pred             CEEEEEC-chHHHHHHHHHHHHC-CCCeE-EEECCCH--HHHHHHHH---hcCCEEeCCHHHHh-------cCCEEEEEe
Confidence            5899999 599999999998754 5 555 4667542  12222211   23556666665432       579988666


Q ss_pred             CchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhh
Q 031216          115 DASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCD  153 (163)
Q Consensus       115 ~p~~~~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~  153 (163)
                      .|....+.+......+..+|.-+.+++.+   .|.+...
T Consensus        66 ~~~~~~~v~~~l~~~~~ivv~~~~g~~~~---~l~~~~~  101 (263)
T 1yqg_A           66 KPQDMEAACKNIRTNGALVLSVAAGLSVG---TLSRYLG  101 (263)
T ss_dssp             CHHHHHHHHTTCCCTTCEEEECCTTCCHH---HHHHHTT
T ss_pred             CchhHHHHHHHhccCCCEEEEecCCCCHH---HHHHHcC
Confidence            65444444432211244444433577763   3444443

>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}

Probab=97.39  E-value=0.0019  Score=52.45  Aligned_cols=35  Identities=11%  Similarity=0.210  Sum_probs=28.1

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhc-CCcEEEEEEe
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAID   68 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~-~~~eLvgvid   68 (163)
                      .++||.|+|++|.+|+.+++.+.+. ...++++...
T Consensus        23 ~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~~~   58 (346)
T 4egb_A           23 NAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDA   58 (346)
T ss_dssp             -CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEEEC
T ss_pred             CCCeEEEECCccHHHHHHHHHHHhhCCCcEEEEEec
Confidence            4689999999999999999999865 2478776544

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=97.32  E-value=0.00072  Score=55.35  Aligned_cols=95  Identities=16%  Similarity=0.136  Sum_probs=57.9

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCC-cchhhhccCCCCCCcce-------eCCHHHHHhcccccCC
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG-EDIGMVCDMEQPLEIPV-------MSDLTMVLGSISQSKA  106 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g-~~~~~l~g~~~~~gi~v-------~~~l~ell~~~~~~~~  106 (163)
                      ++||.|+|++|.+|+.+++.+.+. +.++.++..+.... .....+..+. ..++.+       .+++++++..    .+
T Consensus        10 ~~~IlVtGatG~iG~~l~~~L~~~-g~~V~~l~R~~~~~~~~~~~~~~l~-~~~v~~~~~Dl~d~~~l~~~~~~----~~   83 (346)
T 3i6i_A           10 KGRVLIAGATGFIGQFVATASLDA-HRPTYILARPGPRSPSKAKIFKALE-DKGAIIVYGLINEQEAMEKILKE----HE   83 (346)
T ss_dssp             -CCEEEECTTSHHHHHHHHHHHHT-TCCEEEEECSSCCCHHHHHHHHHHH-HTTCEEEECCTTCHHHHHHHHHH----TT
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHC-CCCEEEEECCCCCChhHHHHHHHHH-hCCcEEEEeecCCHHHHHHHHhh----CC
Confidence            468999999999999999999865 68888766543110 0111000000 112222       1234455542    48


Q ss_pred             ccEEEEccCc---hhHHHHHHHHHHcC-CcEEE
Q 031216          107 RAVVIDFTDA---STVYDNVKQATAFG-MRSVV  135 (163)
Q Consensus       107 ~DVVIDfT~p---~~~~~~~~~al~~G-~~vVi  135 (163)
                      +|+||.+..+   ......+..|.+.| +..++
T Consensus        84 ~d~Vi~~a~~~n~~~~~~l~~aa~~~g~v~~~v  116 (346)
T 3i6i_A           84 IDIVVSTVGGESILDQIALVKAMKAVGTIKRFL  116 (346)
T ss_dssp             CCEEEECCCGGGGGGHHHHHHHHHHHCCCSEEE
T ss_pred             CCEEEECCchhhHHHHHHHHHHHHHcCCceEEe
Confidence            9999987644   34467778888888 77665

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=97.32  E-value=0.00062  Score=55.94  Aligned_cols=95  Identities=15%  Similarity=0.095  Sum_probs=57.0

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC-CcchhhhccCC--C-----CCCc-ceeCCHHHHHhcccccC
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-GEDIGMVCDME--Q-----PLEI-PVMSDLTMVLGSISQSK  105 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~-g~~~~~l~g~~--~-----~~gi-~v~~~l~ell~~~~~~~  105 (163)
                      ++||+|+| .|.||..++..+.+ .+.++. ++|+... -..+.+..+..  .     ...+ .+++++++++.      
T Consensus         4 ~mki~iiG-~G~~G~~~a~~L~~-~g~~V~-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------   74 (359)
T 1bg6_A            4 SKTYAVLG-LGNGGHAFAAYLAL-KGQSVL-AWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVK------   74 (359)
T ss_dssp             CCEEEEEC-CSHHHHHHHHHHHH-TTCEEE-EECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHT------
T ss_pred             cCeEEEEC-CCHHHHHHHHHHHh-CCCEEE-EEeCCHHHHHHHHhcCCeEEeccccccccccceecCCHHHHHh------
Confidence            37999999 59999999998874 578865 5665321 01111100100  0     0112 35678888774      


Q ss_pred             CccEEEEccCchhHHHHHHHH---HHcCCcEEEeCCC
Q 031216          106 ARAVVIDFTDASTVYDNVKQA---TAFGMRSVVYVPH  139 (163)
Q Consensus       106 ~~DVVIDfT~p~~~~~~~~~a---l~~G~~vVigttg  139 (163)
                      ++|+||.++.+....+.+...   +..+..+|.. .+
T Consensus        75 ~~D~vi~~v~~~~~~~~~~~l~~~l~~~~~vv~~-~~  110 (359)
T 1bg6_A           75 DADVILIVVPAIHHASIAANIASYISEGQLIILN-PG  110 (359)
T ss_dssp             TCSEEEECSCGGGHHHHHHHHGGGCCTTCEEEES-SC
T ss_pred             cCCEEEEeCCchHHHHHHHHHHHhCCCCCEEEEc-CC
Confidence            899999676665555555443   3456667665 44

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=97.31  E-value=0.002  Score=56.15  Aligned_cols=108  Identities=13%  Similarity=0.155  Sum_probs=63.1

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCC----------------CCCCcceeCCHHHH
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDME----------------QPLEIPVMSDLTMV   97 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~----------------~~~gi~v~~~l~el   97 (163)
                      +.+||+|+| +|+||..++..+. ..|.++++ +|++.  ..+..+....                .+.++.+++|++++
T Consensus         7 ~~~~~~vIG-lG~vG~~~A~~La-~~G~~V~~-~D~~~--~kv~~l~~g~~~~~epgl~~~~~~~~~~g~l~~ttd~~ea   81 (446)
T 4a7p_A            7 GSVRIAMIG-TGYVGLVSGACFS-DFGHEVVC-VDKDA--RKIELLHQNVMPIYEPGLDALVASNVKAGRLSFTTDLAEG   81 (446)
T ss_dssp             CCCEEEEEC-CSHHHHHHHHHHH-HTTCEEEE-ECSCS--TTHHHHTTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHH
T ss_pred             CceEEEEEc-CCHHHHHHHHHHH-HCCCEEEE-EeCCH--HHHHHHhcCCCCccCCCHHHHHHhhcccCCEEEECCHHHH
Confidence            448999999 7999999999887 46888885 56432  1122211100                01235667899888


Q ss_pred             HhcccccCCccEEEEcc-Cch----------hHHHHHH---HHHHcCCcEEEeCCCCCHHHHHHHHHHhh
Q 031216           98 LGSISQSKARAVVIDFT-DAS----------TVYDNVK---QATAFGMRSVVYVPHIQLETVSALSAFCD  153 (163)
Q Consensus        98 l~~~~~~~~~DVVIDfT-~p~----------~~~~~~~---~al~~G~~vVigttg~~~e~~~~L~~~A~  153 (163)
                      +.      .+|++|.+- +|.          .+.+.+.   ..++.|.-||..+ +..+...+++.+..+
T Consensus        82 ~~------~aDvvii~Vptp~~~~~~~~Dl~~v~~v~~~i~~~l~~g~iVV~~S-Tv~pgtt~~l~~~l~  144 (446)
T 4a7p_A           82 VK------DADAVFIAVGTPSRRGDGHADLSYVFAAAREIAENLTKPSVIVTKS-TVPVGTGDEVERIIA  144 (446)
T ss_dssp             HT------TCSEEEECCCCCBCTTTCCBCTHHHHHHHHHHHHSCCSCCEEEECS-CCCTTHHHHHHHHHH
T ss_pred             Hh------cCCEEEEEcCCCCccccCCccHHHHHHHHHHHHHhcCCCCEEEEeC-CCCchHHHHHHHHHH
Confidence            75      899988652 332          1333332   3344566666644 444444444444433

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=97.31  E-value=0.0011  Score=53.60  Aligned_cols=102  Identities=13%  Similarity=0.077  Sum_probs=58.1

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCC-cchhhh--------c----cCCC------CCCcceeCCHH
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG-EDIGMV--------C----DMEQ------PLEIPVMSDLT   95 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g-~~~~~l--------~----g~~~------~~gi~v~~~l~   95 (163)
                      +.||+|+| .|.||+.+++.+. ..+++++. +|++... ....+.        .    ++..      ...+...++++
T Consensus         4 ~~kV~VIG-aG~mG~~iA~~la-~~G~~V~l-~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~   80 (283)
T 4e12_A            4 ITNVTVLG-TGVLGSQIAFQTA-FHGFAVTA-YDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYSDDLA   80 (283)
T ss_dssp             CCEEEEEC-CSHHHHHHHHHHH-HTTCEEEE-ECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEESCHH
T ss_pred             CCEEEEEC-CCHHHHHHHHHHH-hCCCeEEE-EeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEeCCHH
Confidence            46899999 5999999999987 45888774 6753210 001110        0    0000      01245578888


Q ss_pred             HHHhcccccCCccEEEEccCch--hHHHH---HHHHHHcCCcEEEeCCCCCHHHH
Q 031216           96 MVLGSISQSKARAVVIDFTDAS--TVYDN---VKQATAFGMRSVVYVPHIQLETV  145 (163)
Q Consensus        96 ell~~~~~~~~~DVVIDfT~p~--~~~~~---~~~al~~G~~vVigttg~~~e~~  145 (163)
                      +++.      ++|+||.+..++  ...+.   +...+..+.-++.-|++++.++.
T Consensus        81 ~~~~------~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il~s~tS~~~~~~l  129 (283)
T 4e12_A           81 QAVK------DADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATNSSTLLPSDL  129 (283)
T ss_dssp             HHTT------TCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHH
T ss_pred             HHhc------cCCEEEEeccCcHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHH
Confidence            8874      899999766443  22222   23333444444444557765543

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=97.30  E-value=0.001  Score=49.68  Aligned_cols=85  Identities=21%  Similarity=0.259  Sum_probs=52.0

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcce-------eCCHHHHHhcccccCCcc
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-------MSDLTMVLGSISQSKARA  108 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v-------~~~l~ell~~~~~~~~~D  108 (163)
                      +||.|+|++|.+|+.+++.+.+ .+.+++++..+...   ...+.    ..++.+       .++++++++      ++|
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~-~g~~V~~~~r~~~~---~~~~~----~~~~~~~~~D~~~~~~~~~~~~------~~d   69 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQ-AGYEVTVLVRDSSR---LPSEG----PRPAHVVVGDVLQAADVDKTVA------GQD   69 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHH-TTCEEEEEESCGGG---SCSSS----CCCSEEEESCTTSHHHHHHHHT------TCS
T ss_pred             CEEEEEcCCcHHHHHHHHHHHH-CCCeEEEEEeChhh---ccccc----CCceEEEEecCCCHHHHHHHHc------CCC
Confidence            6899999999999999999986 47898876543211   11110    111211       123445553      799


Q ss_pred             EEEEccCch-----------hHHHHHHHHHHcCC-cEE
Q 031216          109 VVIDFTDAS-----------TVYDNVKQATAFGM-RSV  134 (163)
Q Consensus       109 VVIDfT~p~-----------~~~~~~~~al~~G~-~vV  134 (163)
                      +||.+..+.           .....++.+.+.+. ++|
T Consensus        70 ~vi~~a~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v  107 (206)
T 1hdo_A           70 AVIVLLGTRNDLSPTTVMSEGARNIVAAMKAHGVDKVV  107 (206)
T ss_dssp             EEEECCCCTTCCSCCCHHHHHHHHHHHHHHHHTCCEEE
T ss_pred             EEEECccCCCCCCccchHHHHHHHHHHHHHHhCCCeEE
Confidence            999876322           23455666777775 444

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=97.27  E-value=0.00084  Score=51.10  Aligned_cols=87  Identities=17%  Similarity=0.173  Sum_probs=53.1

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcce-eCCHH----HHHhcccccCCccEE
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDLT----MVLGSISQSKARAVV  110 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v-~~~l~----ell~~~~~~~~~DVV  110 (163)
                      |||.|+|++|.+|+.+++.+.+ .+.+++++..+.   .+..++.    ..++.+ ..|+.    +++      ..+|+|
T Consensus         1 MkilVtGatG~iG~~l~~~L~~-~g~~V~~~~R~~---~~~~~~~----~~~~~~~~~D~~d~~~~~~------~~~d~v   66 (224)
T 3h2s_A            1 MKIAVLGATGRAGSAIVAEARR-RGHEVLAVVRDP---QKAADRL----GATVATLVKEPLVLTEADL------DSVDAV   66 (224)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESCH---HHHHHHT----CTTSEEEECCGGGCCHHHH------TTCSEE
T ss_pred             CEEEEEcCCCHHHHHHHHHHHH-CCCEEEEEEecc---ccccccc----CCCceEEecccccccHhhc------ccCCEE
Confidence            5899999999999999999985 488988765432   1122221    112221 12221    444      489999


Q ss_pred             EEccCc-----------hhHHHHHHHHHHcCCcEEEe
Q 031216          111 IDFTDA-----------STVYDNVKQATAFGMRSVVY  136 (163)
Q Consensus       111 IDfT~p-----------~~~~~~~~~al~~G~~vVig  136 (163)
                      |.+..+           ......+..+.+.|.++|.-
T Consensus        67 i~~ag~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~  103 (224)
T 3h2s_A           67 VDALSVPWGSGRGYLHLDFATHLVSLLRNSDTLAVFI  103 (224)
T ss_dssp             EECCCCCTTSSCTHHHHHHHHHHHHTCTTCCCEEEEE
T ss_pred             EECCccCCCcchhhHHHHHHHHHHHHHHHcCCcEEEE
Confidence            987633           12234455666777777643

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=97.26  E-value=0.0029  Score=55.32  Aligned_cols=73  Identities=12%  Similarity=0.112  Sum_probs=46.4

Q ss_pred             CCCCeeEEEEcCCCHHHHHHHHHHHhc-CCcEEEEEEecCCCCcchhhhcc-C---C-----------CCCCcceeCCHH
Q 031216           32 PQSNIKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAIDSHSVGEDIGMVCD-M---E-----------QPLEIPVMSDLT   95 (163)
Q Consensus        32 ~~~~irV~VvGa~G~mG~~i~~~i~~~-~~~eLvgvid~~~~g~~~~~l~g-~---~-----------~~~gi~v~~~l~   95 (163)
                      +.+|+||+|+| +|+||..++..+.+. ++.++++ +|++.  ..+..+.. .   .           ...++..+++++
T Consensus         6 ~~~~mkI~VIG-~G~vG~~~A~~La~~g~g~~V~~-~D~~~--~~v~~l~~g~~~i~e~gl~~~~~~~~~~~l~~t~~~~   81 (481)
T 2o3j_A            6 FGKVSKVVCVG-AGYVGGPTCAMIAHKCPHITVTV-VDMNT--AKIAEWNSDKLPIYEPGLDEIVFAARGRNLFFSSDIP   81 (481)
T ss_dssp             SCCCCEEEEEC-CSTTHHHHHHHHHHHCTTSEEEE-ECSCH--HHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHH
T ss_pred             CCCCCEEEEEC-CCHHHHHHHHHHHhcCCCCEEEE-EECCH--HHHHHHHCCCCCcCCCCHHHHHHHhhcCCEEEECCHH
Confidence            34568999999 699999999998876 3788875 56431  11111110 0   0           011345667887


Q ss_pred             HHHhcccccCCccEEEEcc
Q 031216           96 MVLGSISQSKARAVVIDFT  114 (163)
Q Consensus        96 ell~~~~~~~~~DVVIDfT  114 (163)
                      +++.      .+|+||.+.
T Consensus        82 ~~~~------~aDvvii~V   94 (481)
T 2o3j_A           82 KAIA------EADLIFISV   94 (481)
T ss_dssp             HHHH------HCSEEEECC
T ss_pred             HHhh------cCCEEEEec
Confidence            7775      799998663

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=97.25  E-value=0.00097  Score=51.56  Aligned_cols=89  Identities=12%  Similarity=0.253  Sum_probs=54.5

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhcc--C-C-CCCCcceeCCHHHHHhcccccCCccEE
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCD--M-E-QPLEIPVMSDLTMVLGSISQSKARAVV  110 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g--~-~-~~~gi~v~~~l~ell~~~~~~~~~DVV  110 (163)
                      .+||.|+|++|.+|+.+++.+.+ .+.+++++..+..   +..++..  . . ...++.  +++.+++.      ++|+|
T Consensus        21 ~~~ilVtGatG~iG~~l~~~L~~-~G~~V~~~~R~~~---~~~~~~~~~~~~~~~~Dl~--~~~~~~~~------~~D~v   88 (236)
T 3e8x_A           21 GMRVLVVGANGKVARYLLSELKN-KGHEPVAMVRNEE---QGPELRERGASDIVVANLE--EDFSHAFA------SIDAV   88 (236)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESSGG---GHHHHHHTTCSEEEECCTT--SCCGGGGT------TCSEE
T ss_pred             CCeEEEECCCChHHHHHHHHHHh-CCCeEEEEECChH---HHHHHHhCCCceEEEcccH--HHHHHHHc------CCCEE
Confidence            47899999999999999999985 5889887654321   1222110  0 0 011121  45556653      89999


Q ss_pred             EEccCch--------------hHHHHHHHHHHcCC-cEEE
Q 031216          111 IDFTDAS--------------TVYDNVKQATAFGM-RSVV  135 (163)
Q Consensus       111 IDfT~p~--------------~~~~~~~~al~~G~-~vVi  135 (163)
                      |....+.              .....++.+.+.|. ++|.
T Consensus        89 i~~ag~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~  128 (236)
T 3e8x_A           89 VFAAGSGPHTGADKTILIDLWGAIKTIQEAEKRGIKRFIM  128 (236)
T ss_dssp             EECCCCCTTSCHHHHHHTTTHHHHHHHHHHHHHTCCEEEE
T ss_pred             EECCCCCCCCCccccchhhHHHHHHHHHHHHHcCCCEEEE
Confidence            9875321              13445667777774 4543

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=97.25  E-value=0.0012  Score=53.34  Aligned_cols=34  Identities=21%  Similarity=0.266  Sum_probs=28.8

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~   69 (163)
                      ++||.|+|++|.+|+.+++.+.+ .+.+++++..+
T Consensus        13 ~M~ilVtGatG~iG~~l~~~L~~-~g~~V~~~~r~   46 (342)
T 2x4g_A           13 HVKYAVLGATGLLGHHAARAIRA-AGHDLVLIHRP   46 (342)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHH-TTCEEEEEECT
T ss_pred             CCEEEEECCCcHHHHHHHHHHHH-CCCEEEEEecC
Confidence            46999999999999999999985 57898876543

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=97.25  E-value=0.00082  Score=54.15  Aligned_cols=95  Identities=17%  Similarity=0.180  Sum_probs=56.4

Q ss_pred             CCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCc---chhhhccCCCCCCcce----eC---CHHHHHhccc
Q 031216           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGE---DIGMVCDMEQPLEIPV----MS---DLTMVLGSIS  102 (163)
Q Consensus        33 ~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~---~~~~l~g~~~~~gi~v----~~---~l~ell~~~~  102 (163)
                      ++|++|.|+|++|.+|+.+++.+.+ .+.++.++..+...+.   ....+..+. ..++.+    ++   ++++++.   
T Consensus         2 ~~~~~ilVtGatG~iG~~l~~~L~~-~g~~V~~~~R~~~~~~~~~~~~~l~~~~-~~~v~~v~~D~~d~~~l~~a~~---   76 (321)
T 3c1o_A            2 SHMEKIIIYGGTGYIGKFMVRASLS-FSHPTFIYARPLTPDSTPSSVQLREEFR-SMGVTIIEGEMEEHEKMVSVLK---   76 (321)
T ss_dssp             --CCCEEEETTTSTTHHHHHHHHHH-TTCCEEEEECCCCTTCCHHHHHHHHHHH-HTTCEEEECCTTCHHHHHHHHT---
T ss_pred             CcccEEEEEcCCchhHHHHHHHHHh-CCCcEEEEECCcccccChHHHHHHHHhh-cCCcEEEEecCCCHHHHHHHHc---
Confidence            3567899999999999999999986 4788886654320110   111100000 112221    12   3445553   


Q ss_pred             ccCCccEEEEccCc---hhHHHHHHHHHHcC-CcEEE
Q 031216          103 QSKARAVVIDFTDA---STVYDNVKQATAFG-MRSVV  135 (163)
Q Consensus       103 ~~~~~DVVIDfT~p---~~~~~~~~~al~~G-~~vVi  135 (163)
                         .+|+||.++.+   ......+..+.+.| +.-++
T Consensus        77 ---~~d~vi~~a~~~~~~~~~~l~~aa~~~g~v~~~v  110 (321)
T 3c1o_A           77 ---QVDIVISALPFPMISSQIHIINAIKAAGNIKRFL  110 (321)
T ss_dssp             ---TCSEEEECCCGGGSGGGHHHHHHHHHHCCCCEEE
T ss_pred             ---CCCEEEECCCccchhhHHHHHHHHHHhCCccEEe
Confidence               79999987754   33466778888888 65444

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=97.25  E-value=0.00038  Score=58.12  Aligned_cols=90  Identities=18%  Similarity=0.118  Sum_probs=56.0

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT  114 (163)
                      .+||+|+| +|.||+.+++.+.. .+++++ +.++...  ...+...   ..|+.++ ++++++.      .+|+||.++
T Consensus        16 ~~~I~IIG-~G~mG~alA~~L~~-~G~~V~-~~~~~~~--~~~~~a~---~~G~~~~-~~~e~~~------~aDvVilav   80 (338)
T 1np3_A           16 GKKVAIIG-YGSQGHAHACNLKD-SGVDVT-VGLRSGS--ATVAKAE---AHGLKVA-DVKTAVA------AADVVMILT   80 (338)
T ss_dssp             TSCEEEEC-CSHHHHHHHHHHHH-TTCCEE-EECCTTC--HHHHHHH---HTTCEEE-CHHHHHH------TCSEEEECS
T ss_pred             CCEEEEEC-chHHHHHHHHHHHH-CcCEEE-EEECChH--HHHHHHH---HCCCEEc-cHHHHHh------cCCEEEEeC
Confidence            46899999 69999999999875 567766 4554321  1111110   2355555 8888775      899999777


Q ss_pred             CchhHHHHHH-H---HHHcCCcEEEeCCCC
Q 031216          115 DASTVYDNVK-Q---ATAFGMRSVVYVPHI  140 (163)
Q Consensus       115 ~p~~~~~~~~-~---al~~G~~vVigttg~  140 (163)
                      +|....+.+. .   .++.|..++. ..|+
T Consensus        81 p~~~~~~v~~~~i~~~l~~~~ivi~-~~gv  109 (338)
T 1np3_A           81 PDEFQGRLYKEEIEPNLKKGATLAF-AHGF  109 (338)
T ss_dssp             CHHHHHHHHHHHTGGGCCTTCEEEE-SCCH
T ss_pred             CcHHHHHHHHHHHHhhCCCCCEEEE-cCCc
Confidence            6666555554 2   2334554443 3443

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=97.25  E-value=0.001  Score=53.63  Aligned_cols=90  Identities=17%  Similarity=0.171  Sum_probs=55.6

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCC-cchhhhccCCCCCCcce----eC---CHHHHHhcccccCC
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG-EDIGMVCDMEQPLEIPV----MS---DLTMVLGSISQSKA  106 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g-~~~~~l~g~~~~~gi~v----~~---~l~ell~~~~~~~~  106 (163)
                      |.||.|+|++|.+|+.+++.+.+. +.++.++..+.... ....++.    ..++.+    ++   ++++++.      .
T Consensus        11 ~~~ilVtGatG~iG~~l~~~L~~~-g~~V~~l~R~~~~~~~~~~~l~----~~~v~~v~~Dl~d~~~l~~a~~------~   79 (318)
T 2r6j_A           11 KSKILIFGGTGYIGNHMVKGSLKL-GHPTYVFTRPNSSKTTLLDEFQ----SLGAIIVKGELDEHEKLVELMK------K   79 (318)
T ss_dssp             CCCEEEETTTSTTHHHHHHHHHHT-TCCEEEEECTTCSCHHHHHHHH----HTTCEEEECCTTCHHHHHHHHT------T
T ss_pred             CCeEEEECCCchHHHHHHHHHHHC-CCcEEEEECCCCchhhHHHHhh----cCCCEEEEecCCCHHHHHHHHc------C
Confidence            358999999999999999999864 78888665432210 0011111    112221    12   3445553      7


Q ss_pred             ccEEEEccCch---hHHHHHHHHHHcC-CcEEE
Q 031216          107 RAVVIDFTDAS---TVYDNVKQATAFG-MRSVV  135 (163)
Q Consensus       107 ~DVVIDfT~p~---~~~~~~~~al~~G-~~vVi  135 (163)
                      +|+||.++.+.   .....+..+.+.| +.-++
T Consensus        80 ~d~vi~~a~~~~~~~~~~l~~aa~~~g~v~~~v  112 (318)
T 2r6j_A           80 VDVVISALAFPQILDQFKILEAIKVAGNIKRFL  112 (318)
T ss_dssp             CSEEEECCCGGGSTTHHHHHHHHHHHCCCCEEE
T ss_pred             CCEEEECCchhhhHHHHHHHHHHHhcCCCCEEE
Confidence            99999877543   3456677788888 65555

>4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae}

Probab=97.23  E-value=0.0016  Score=56.15  Aligned_cols=122  Identities=16%  Similarity=0.149  Sum_probs=61.1

Q ss_pred             cccccccccccceeee---ccCCCCCCCeeEEEEcCCCHHHHHHHHHHHhcCC-------cEEEEEEecCC--CCcchhh
Q 031216           11 RMHHISQNVKAKRFIS---CSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARG-------MEVAGAIDSHS--VGEDIGM   78 (163)
Q Consensus        11 ~~~~~~~~~~~~~~~~---~~~~~~~~~irV~VvGa~G~mG~~i~~~i~~~~~-------~eLvgvid~~~--~g~~~~~   78 (163)
                      |.-+.++.+.++|--+   ++-..+.+|+||+|+| .|.+|..++..+.+...       .++. +..++.  .++...+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~KI~ViG-aGsWGTALA~~la~ng~~~~~~~~~~V~-lw~r~~e~~~~~~~e   84 (391)
T 4fgw_A            7 RLNLTSGHLNAGRKRSSSSVSLKAAEKPFKVTVIG-SGNWGTTIAKVVAENCKGYPEVFAPIVQ-MWVFEEEINGEKLTE   84 (391)
T ss_dssp             --------------------------CCEEEEEEC-CSHHHHHHHHHHHHHHHHCTTTEEEEEE-EECCCCBSSSCBHHH
T ss_pred             HHHHHhhhhccccccccccccccccCCCCeEEEEC-cCHHHHHHHHHHHHcCCCccccCCceEE-EEEcchHhhhHHHHH
Confidence            3444466665544332   2223344789999999 59999999998875311       1222 222211  1111111


Q ss_pred             -----------hccCCCCCCcceeCCHHHHHhcccccCCccEEEEccCchhH-HHHHHHH---HHcCCcEEEeCCCCC
Q 031216           79 -----------VCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTV-YDNVKQA---TAFGMRSVVYVPHIQ  141 (163)
Q Consensus        79 -----------l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT~p~~~-~~~~~~a---l~~G~~vVigttg~~  141 (163)
                                 +.+..-+.++.+++|+++++.      ..|+|| +..|... .+.+...   +..+.++|..+-|+.
T Consensus        85 ~in~~~~N~~YLpgv~Lp~~i~~t~dl~~al~------~ad~ii-~avPs~~~r~~l~~l~~~~~~~~~iv~~~KGie  155 (391)
T 4fgw_A           85 IINTRHQNVKYLPGITLPDNLVANPDLIDSVK------DVDIIV-FNIPHQFLPRICSQLKGHVDSHVRAISCLKGFE  155 (391)
T ss_dssp             HHTTTCCBTTTBTTCCCCSSEEEESCHHHHHT------TCSEEE-ECSCGGGHHHHHHHHTTTSCTTCEEEECCCSCE
T ss_pred             HHHhcCcCcccCCCCcCCCCcEEeCCHHHHHh------cCCEEE-EECChhhhHHHHHHhccccCCCceeEEeccccc
Confidence                       112222456778899999985      899988 6666555 3444433   456778888777874

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=97.23  E-value=0.0007  Score=54.65  Aligned_cols=106  Identities=11%  Similarity=0.138  Sum_probs=58.8

Q ss_pred             CCCeeEEEEcCCCHHHHHHHHHHHhcC----C-cEEEEEEecCCCCcchhhhc---cCC--C------CCCcceeCCHHH
Q 031216           33 QSNIKVIINGAVKEIGRAAVIAVTKAR----G-MEVAGAIDSHSVGEDIGMVC---DME--Q------PLEIPVMSDLTM   96 (163)
Q Consensus        33 ~~~irV~VvGa~G~mG~~i~~~i~~~~----~-~eLvgvid~~~~g~~~~~l~---g~~--~------~~gi~v~~~l~e   96 (163)
                      +.|+||+|+| .|.||..++..+.+.+    + .++. ++++.   .....+.   |..  .      ...+.++++.++
T Consensus         6 ~~~m~I~iiG-~G~mG~~~a~~L~~~~~~~~g~~~V~-~~~r~---~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~   80 (317)
T 2qyt_A            6 QQPIKIAVFG-LGGVGGYYGAMLALRAAATDGLLEVS-WIARG---AHLEAIRAAGGLRVVTPSRDFLARPTCVTDNPAE   80 (317)
T ss_dssp             -CCEEEEEEC-CSHHHHHHHHHHHHHHHHTTSSEEEE-EECCH---HHHHHHHHHTSEEEECSSCEEEECCSEEESCHHH
T ss_pred             CCCCEEEEEC-cCHHHHHHHHHHHhCccccCCCCCEE-EEEcH---HHHHHHHhcCCeEEEeCCCCeEEecceEecCccc
Confidence            4568999999 5999999999987651    6 6766 44542   1111111   100  0      011223345543


Q ss_pred             HHhcccccCCccEEEEccCchhHHHHHHHH---HHcCCcEEEeCCCCCHHHHHHHHHHh
Q 031216           97 VLGSISQSKARAVVIDFTDASTVYDNVKQA---TAFGMRSVVYVPHIQLETVSALSAFC  152 (163)
Q Consensus        97 ll~~~~~~~~~DVVIDfT~p~~~~~~~~~a---l~~G~~vVigttg~~~e~~~~L~~~A  152 (163)
                       .      .++|+||-++.+....+.+...   +..+..+|.-+.|++.+  +.|.+..
T Consensus        81 -~------~~~D~vil~vk~~~~~~v~~~i~~~l~~~~~iv~~~nG~~~~--~~l~~~l  130 (317)
T 2qyt_A           81 -V------GTVDYILFCTKDYDMERGVAEIRPMIGQNTKILPLLNGADIA--ERMRTYL  130 (317)
T ss_dssp             -H------CCEEEEEECCSSSCHHHHHHHHGGGEEEEEEEEECSCSSSHH--HHHTTTS
T ss_pred             -c------CCCCEEEEecCcccHHHHHHHHHhhcCCCCEEEEccCCCCcH--HHHHHHC
Confidence             3      3899999666666555544433   22355566656687643  3344443

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=97.23  E-value=0.00078  Score=54.05  Aligned_cols=111  Identities=15%  Similarity=0.208  Sum_probs=57.0

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhc--cCC--C-----CCCcceeCCHHHHHhccccc
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC--DME--Q-----PLEIPVMSDLTMVLGSISQS  104 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~--g~~--~-----~~gi~v~~~l~ell~~~~~~  104 (163)
                      +|+||+|+| .|.||..++..+.+ .+.++.. +|++.  .....+.  +..  .     ...+.++ +.+++...   -
T Consensus         2 ~~m~i~iiG-~G~~G~~~a~~l~~-~g~~V~~-~~r~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~---~   72 (316)
T 2ew2_A            2 NAMKIAIAG-AGAMGSRLGIMLHQ-GGNDVTL-IDQWP--AHIEAIRKNGLIADFNGEEVVANLPIF-SPEEIDHQ---N   72 (316)
T ss_dssp             --CEEEEEC-CSHHHHHHHHHHHH-TTCEEEE-ECSCH--HHHHHHHHHCEEEEETTEEEEECCCEE-CGGGCCTT---S
T ss_pred             CCCeEEEEC-cCHHHHHHHHHHHh-CCCcEEE-EECCH--HHHHHHHhCCEEEEeCCCeeEecceee-cchhhccc---C
Confidence            467999999 59999999999874 5778764 56431  1111111  100  0     0011122 22232210   0


Q ss_pred             CCccEEEEccCchhHHHHHHHHH---HcCCcEEEeCCCCCHHHHHHHHHHhhhc
Q 031216          105 KARAVVIDFTDASTVYDNVKQAT---AFGMRSVVYVPHIQLETVSALSAFCDKA  155 (163)
Q Consensus       105 ~~~DVVIDfT~p~~~~~~~~~al---~~G~~vVigttg~~~e~~~~L~~~A~~~  155 (163)
                      .++|+||.++.+....+.+....   ..+..+|.-++|++.  .+.|.+...+.
T Consensus        73 ~~~d~vi~~v~~~~~~~v~~~l~~~l~~~~~iv~~~~g~~~--~~~l~~~~~~~  124 (316)
T 2ew2_A           73 EQVDLIIALTKAQQLDAMFKAIQPMITEKTYVLCLLNGLGH--EDVLEKYVPKE  124 (316)
T ss_dssp             CCCSEEEECSCHHHHHHHHHHHGGGCCTTCEEEECCSSSCT--HHHHTTTSCGG
T ss_pred             CCCCEEEEEeccccHHHHHHHHHHhcCCCCEEEEecCCCCc--HHHHHHHcCCc
Confidence            27999996666555444444332   335566665567753  23344444333

>2y1e_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; oxidoreductase, DOXP/MEP pathway; 1.65A {Mycobacterium tuberculosis} PDB: 2jcv_A* 2jcz_A* 2jd2_A 2jd1_A 2y1d_A* 2y1c_A 2y1f_A* 2y1g_A* 3ras_A* 4a03_A* 4aic_A* 2jcx_A* 2jcy_A 2jd0_A* 2c82_A

Probab=97.23  E-value=0.0017  Score=55.91  Aligned_cols=114  Identities=14%  Similarity=0.134  Sum_probs=70.0

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCC-cEEEEEEe-cCCCC---cchhhhcc----CCC-----CCCccee---CCHHHH
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARG-MEVAGAID-SHSVG---EDIGMVCD----MEQ-----PLEIPVM---SDLTMV   97 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~-~eLvgvid-~~~~g---~~~~~l~g----~~~-----~~gi~v~---~~l~el   97 (163)
                      |.||.|.|++|-+|+..+..+.++|+ ++++++.. .+...   +.+.++-.    +..     ..++.++   +.+.++
T Consensus        21 mk~i~ILGSTGSIGtqtLdVi~~~pd~f~V~aLaa~g~nv~~L~~q~~~f~p~~v~v~d~~~~~~~~~~v~~G~~~l~~~  100 (398)
T 2y1e_A           21 RLRVVVLGSTGSIGTQALQVIADNPDRFEVVGLAAGGAHLDTLLRQRAQTGVTNIAVADEHAAQRVGDIPYHGSDAATRL  100 (398)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHHHCTTTEEEEEEEECSSCHHHHHHHHHHHCCCCEEESCHHHHHHHCCCSEESTTHHHHH
T ss_pred             ceEEEEEccCcHHHHHHHHHHHhCCCceEEEEEEecCCCHHHHHHHHHHcCCCEEEEcCHHHhhhcCCEEEecHHHHHHH
Confidence            78899999999999999999999987 99999988 43210   11111100    000     0011222   123333


Q ss_pred             HhcccccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeCCCCCHHHH----HHHHHHhhhcC
Q 031216           98 LGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETV----SALSAFCDKAS  156 (163)
Q Consensus        98 l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigttg~~~e~~----~~L~~~A~~~~  156 (163)
                      ..    ..++|+|+..-.=.....-...|+++|+.+-...    .|.+    +.+.+++++.+
T Consensus       101 a~----~~~~D~Vv~AIvG~aGL~PTlaAi~aGK~iaLAN----KEsLV~aG~lv~~~a~~~~  155 (398)
T 2y1e_A          101 VE----QTEADVVLNALVGALGLRPTLAALKTGARLALAN----KESLVAGGSLVLRAARPGQ  155 (398)
T ss_dssp             HH----HSCCSEEEECCCSGGGHHHHHHHHHHTCEEEECC----HHHHHHHTHHHHHHCCTTC
T ss_pred             hc----CCCCCEEEEeCcCHHHHHHHHHHHHCCCceEEcc----cchheecHHHHHHHHHHcC
Confidence            33    2579999955555555677788999999998743    3332    34455566555

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=97.21  E-value=0.00069  Score=54.04  Aligned_cols=93  Identities=19%  Similarity=0.266  Sum_probs=55.5

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcc----hhhhccCCCCCCcce----eCC---HHHHHhcccc
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGED----IGMVCDMEQPLEIPV----MSD---LTMVLGSISQ  103 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~----~~~l~g~~~~~gi~v----~~~---l~ell~~~~~  103 (163)
                      |.||.|+|++|.+|+.+++.+.+. +.++.++..+...+.+    ...+..+. ..++.+    ++|   +++++.    
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~R~~~~~~~~~~~~~~~~~l~-~~~v~~v~~D~~d~~~l~~~~~----   75 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKA-GNPTYALVRKTITAANPETKEELIDNYQ-SLGVILLEGDINDHETLVKAIK----   75 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHH-TCCEEEEECCSCCSSCHHHHHHHHHHHH-HTTCEEEECCTTCHHHHHHHHT----
T ss_pred             CcEEEEECCCchHHHHHHHHHHhC-CCcEEEEECCCcccCChHHHHHHHHHHH-hCCCEEEEeCCCCHHHHHHHHh----
Confidence            578999999999999999999864 6788765543211111    11100000 112221    123   345553    


Q ss_pred             cCCccEEEEccCc---hhHHHHHHHHHHcC-CcEEE
Q 031216          104 SKARAVVIDFTDA---STVYDNVKQATAFG-MRSVV  135 (163)
Q Consensus       104 ~~~~DVVIDfT~p---~~~~~~~~~al~~G-~~vVi  135 (163)
                        .+|+||.+..+   ......+..+.+.| +.-++
T Consensus        76 --~~d~vi~~a~~~~~~~~~~l~~aa~~~g~v~~~v  109 (307)
T 2gas_A           76 --QVDIVICAAGRLLIEDQVKIIKAIKEAGNVKKFF  109 (307)
T ss_dssp             --TCSEEEECSSSSCGGGHHHHHHHHHHHCCCSEEE
T ss_pred             --CCCEEEECCcccccccHHHHHHHHHhcCCceEEe
Confidence              79999987643   34456777888888 65554

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=97.20  E-value=0.00081  Score=51.69  Aligned_cols=35  Identities=14%  Similarity=0.246  Sum_probs=30.0

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcC-CcEEEEEEe
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAID   68 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~-~~eLvgvid   68 (163)
                      .+.+|.|+|++|.+|+.+++.+.+.. +.+++++..
T Consensus         3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r   38 (253)
T 1xq6_A            3 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVR   38 (253)
T ss_dssp             SCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEES
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEc
Confidence            46789999999999999999998765 899887654

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=97.19  E-value=0.00082  Score=52.94  Aligned_cols=85  Identities=15%  Similarity=0.221  Sum_probs=51.6

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhc-CCcEEEEEEecCCCCcchhhhccCCCCCCcce-------eCCHHHHHhcccccCCcc
Q 031216           37 KVIINGAVKEIGRAAVIAVTKA-RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-------MSDLTMVLGSISQSKARA  108 (163)
Q Consensus        37 rV~VvGa~G~mG~~i~~~i~~~-~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v-------~~~l~ell~~~~~~~~~D  108 (163)
                      ||.|+|++|.+|+.+++.+.+. ++.+++++..+...   ...+..    .++.+       .+++++++      ..+|
T Consensus         1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~---~~~~~~----~~~~~~~~D~~d~~~~~~~~------~~~d   67 (286)
T 2zcu_A            1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAK---AQALAA----QGITVRQADYGDEAALTSAL------QGVE   67 (286)
T ss_dssp             CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTT---CHHHHH----TTCEEEECCTTCHHHHHHHT------TTCS
T ss_pred             CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHh---hhhhhc----CCCeEEEcCCCCHHHHHHHH------hCCC
Confidence            5899999999999999999865 48898876543221   111110    11111       12344455      3789


Q ss_pred             EEEEccCc------hhHHHHHHHHHHcCC-cEE
Q 031216          109 VVIDFTDA------STVYDNVKQATAFGM-RSV  134 (163)
Q Consensus       109 VVIDfT~p------~~~~~~~~~al~~G~-~vV  134 (163)
                      +||.++.+      ......+..+.+.|+ ++|
T Consensus        68 ~vi~~a~~~~~~~~~~~~~l~~a~~~~~~~~~v  100 (286)
T 2zcu_A           68 KLLLISSSEVGQRAPQHRNVINAAKAAGVKFIA  100 (286)
T ss_dssp             EEEECC--------CHHHHHHHHHHHHTCCEEE
T ss_pred             EEEEeCCCCchHHHHHHHHHHHHHHHcCCCEEE
Confidence            99987643      233456677777785 444

>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A*

Probab=97.18  E-value=0.0032  Score=51.03  Aligned_cols=34  Identities=21%  Similarity=0.161  Sum_probs=29.0

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcC-CcEEEEEEe
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAID   68 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~-~~eLvgvid   68 (163)
                      |++|.|+|++|.+|+.+++.+.+.. +.+++++..
T Consensus         4 m~~vlVTGatG~iG~~l~~~L~~~~~g~~V~~~~r   38 (348)
T 1oc2_A            4 FKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDK   38 (348)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEEC
T ss_pred             CcEEEEeCCccHHHHHHHHHHHHhCCCCEEEEEeC
Confidence            6799999999999999999988753 789887644

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}

Probab=97.17  E-value=0.0032  Score=51.66  Aligned_cols=35  Identities=14%  Similarity=0.176  Sum_probs=30.3

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhc-CCcEEEEEEe
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAID   68 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~-~~~eLvgvid   68 (163)
                      .+++|.|+|++|.+|+.+++.+.+. .+.+++++..
T Consensus         9 ~~~~vlVTGatG~IG~~l~~~L~~~~~g~~V~~~~r   44 (362)
T 3sxp_A            9 ENQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDK   44 (362)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHCTTSEEEEEEC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhhCCCCeEEEEEC
Confidence            4579999999999999999999864 7999997654

>3ids_C GAPDH, glyceraldehyde-3-phosphate dehydrogenase, glycoso; irreversible inhibitor, protein-ligand complex,X-RAY, glycol NAD, oxireductase; HET: NAD; 1.80A {Trypanosoma cruzi} PDB: 1ml3_A* 1qxs_C* 3dmt_A* 1k3t_A* 2x0n_A* 1gga_O* 1i32_A* 1a7k_A* 1i33_A* 1gyp_A* 1gyq_A*

Probab=97.17  E-value=0.0004  Score=59.31  Aligned_cols=97  Identities=23%  Similarity=0.137  Sum_probs=61.1

Q ss_pred             CeeEEEEcCCCHHHHHHHHH----HHhcCCcEEEEEEecC--------------CCCcchhhh--------------ccC
Q 031216           35 NIKVIINGAVKEIGRAAVIA----VTKARGMEVAGAIDSH--------------SVGEDIGMV--------------CDM   82 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~----i~~~~~~eLvgvid~~--------------~~g~~~~~l--------------~g~   82 (163)
                      ++||+|.| .||+||.+.|.    +.+.+++++|++-|+.              ..|+=-+++              +-+
T Consensus         2 ~~kv~ING-FGrIGr~v~Ra~~~~~~~~~~~~vvaINd~~~d~~~~a~llkyDS~hG~f~~~v~~~~~~~~~~~~~~l~i   80 (359)
T 3ids_C            2 PIKVGING-FGRIGRMVFQALCEDGLLGTEIDVVAVVDMNTDAEYFAYQMRYDTVHGKFKYEVTTTKSSPSVAKDDTLVV   80 (359)
T ss_dssp             CEEEEEEC-TTHHHHHHHHHHHHTTCBTTTEEEEEEECSSCCHHHHHHHHHEETTTEECSSCEEEECSCTTSSSCCEEEE
T ss_pred             ceEEEEEC-CChHHHHHHHHhHHHHhcCCCcEEEEEecCCCCHHHHHHHhcccCCCCCEeeEEEecccccccCCCCEEEE
Confidence            58999999 79999999998    6667899999998831              011100000              000


Q ss_pred             CCCCCcceeC---CHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCc-EEEe
Q 031216           83 EQPLEIPVMS---DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMR-SVVY  136 (163)
Q Consensus        83 ~~~~gi~v~~---~l~ell~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~-vVig  136 (163)
                      . ...+.++.   +++++-..   +..+|+|++.|--....+.+...++.|.. ||+-
T Consensus        81 n-Gk~I~v~~~e~dp~~i~w~---~~gvDiVlesTG~f~s~e~A~~hl~aGAkkViIS  134 (359)
T 3ids_C           81 N-GHRILCVKAQRNPADLPWG---KLGVEYVIESTGLFTAKAAAEGHLRGGARKVVIS  134 (359)
T ss_dssp             T-TEEEEECCCCSSTTTSCHH---HHTCCEEEECSSSCCBHHHHTHHHHTTCCEEEES
T ss_pred             C-CEEEEEEEccCCcccCCcc---ccCccEEEEeccccCCHHHHHHHHHcCCCEEEEC
Confidence            0 11244543   44432210   13799999877666667888888899964 5553

>3hja_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; niaid, ssgcid, decode, UW, SBRI, LYME disease, non-hodgkin lymphomas, cytoplasm; HET: NAD; 2.20A {Borrelia burgdorferi B31}

Probab=97.17  E-value=0.00012  Score=62.43  Aligned_cols=102  Identities=21%  Similarity=0.248  Sum_probs=58.6

Q ss_pred             CCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC-------------CCc------chhhhccCCCCCCcceeC
Q 031216           32 PQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-------------VGE------DIGMVCDMEQPLEIPVMS   92 (163)
Q Consensus        32 ~~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~-------------~g~------~~~~l~g~~~~~gi~v~~   92 (163)
                      ..+++||+|.|+ |++||.+.|.+.+. +++++++-|...             .|+      -.+..+-+. ...+.++.
T Consensus        18 ~~~~~kVaInGf-GrIGr~vlr~l~e~-~~~ivaIndl~d~~~~a~llkydS~hG~f~~~v~~~~~~l~i~-Gk~I~v~~   94 (356)
T 3hja_A           18 GPGSMKLAINGF-GRIGRNVFKIAFER-GIDIVAINDLTDPKTLAHLLKYDSTFGVYNKKVESRDGAIVVD-GREIKIIA   94 (356)
T ss_dssp             ----CEEEEECC-SHHHHHHHHHHHHT-TCEEEEEECSSCHHHHHHHHHEETTTEECSSCEEEETTEEEET-TEEEEEEC
T ss_pred             CCCCeEEEEECC-CHHHHHHHHHHHHC-CCCEEEEeCCCCHHHhhhhhccccCCCCCCCCEEEcCCEEEEC-CEEEEEEE
Confidence            345699999996 99999999998876 899999866310             010      000000000 12244543


Q ss_pred             --CHHHHHhcccccCCccEEEEcc----CchhHHHHHHHHHH-cCCc-EEEeCCC
Q 031216           93 --DLTMVLGSISQSKARAVVIDFT----DASTVYDNVKQATA-FGMR-SVVYVPH  139 (163)
Q Consensus        93 --~l~ell~~~~~~~~~DVVIDfT----~p~~~~~~~~~al~-~G~~-vVigttg  139 (163)
                        +++++-..   +..+|+|+++|    +|....+.+...++ .|.. ||+-.|.
T Consensus        95 ~~dp~~i~w~---~~gvDiV~esTG~f~s~~~~~e~a~~hl~~aGAkkVVIsaps  146 (356)
T 3hja_A           95 ERDPKNLPWA---KLGIDVVIESTGVFSSATSDKGGYLDHVNHAGAKKVILTVPA  146 (356)
T ss_dssp             CSSGGGCCHH---HHTCSEEEECSSSCCSSCCTTCCGGGGTTTSCCSEEEESSCC
T ss_pred             cCChhhCCcc---ccCCCEEEEecccccccchhHHHHHHHHHhCCCeEEEECCCC
Confidence              45443211   13899999866    33333667777778 8854 6664543

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=97.16  E-value=0.0018  Score=52.66  Aligned_cols=88  Identities=22%  Similarity=0.221  Sum_probs=52.1

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEc
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDf  113 (163)
                      +++||.|+|++|.+|+.+++.+.+ .+.+++++..+.. ...+.-+     ..++.-.+++++++.      ++|+||.+
T Consensus        18 ~~~~vlVtGatG~iG~~l~~~L~~-~G~~V~~~~r~~~-~~~~~~~-----~~Dl~d~~~~~~~~~------~~d~vih~   84 (347)
T 4id9_A           18 GSHMILVTGSAGRVGRAVVAALRT-QGRTVRGFDLRPS-GTGGEEV-----VGSLEDGQALSDAIM------GVSAVLHL   84 (347)
T ss_dssp             ---CEEEETTTSHHHHHHHHHHHH-TTCCEEEEESSCC-SSCCSEE-----ESCTTCHHHHHHHHT------TCSEEEEC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHh-CCCEEEEEeCCCC-CCCccEE-----ecCcCCHHHHHHHHh------CCCEEEEC
Confidence            458899999999999999999985 5788887644321 1111100     111111133455553      89999987


Q ss_pred             cCc-----h-----------hHHHHHHHHHHcCC-cEE
Q 031216          114 TDA-----S-----------TVYDNVKQATAFGM-RSV  134 (163)
Q Consensus       114 T~p-----~-----------~~~~~~~~al~~G~-~vV  134 (163)
                      ..+     .           .....+..+.+.|+ ++|
T Consensus        85 A~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~V  122 (347)
T 4id9_A           85 GAFMSWAPADRDRMFAVNVEGTRRLLDAASAAGVRRFV  122 (347)
T ss_dssp             CCCCCSSGGGHHHHHHHHTHHHHHHHHHHHHTTCSEEE
T ss_pred             CcccCcchhhHHHHHHHHHHHHHHHHHHHHHcCCCeEE
Confidence            522     1           12345677777886 454

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=97.16  E-value=0.0015  Score=52.13  Aligned_cols=93  Identities=15%  Similarity=0.207  Sum_probs=55.5

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCC---cchhhhccCCCCCCccee-------CCHHHHHhccccc
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG---EDIGMVCDMEQPLEIPVM-------SDLTMVLGSISQS  104 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g---~~~~~l~g~~~~~gi~v~-------~~l~ell~~~~~~  104 (163)
                      |.||.|+|++|.+|+.+++.+.+ .+.++.++..+....   .....+.... ..++.+.       +++++++.     
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~-~g~~V~~l~R~~~~~~~~~~~~~~~~l~-~~~v~~v~~D~~d~~~l~~~~~-----   76 (308)
T 1qyc_A            4 RSRILLIGATGYIGRHVAKASLD-LGHPTFLLVRESTASSNSEKAQLLESFK-ASGANIVHGSIDDHASLVEAVK-----   76 (308)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHH-TTCCEEEECCCCCTTTTHHHHHHHHHHH-TTTCEEECCCTTCHHHHHHHHH-----
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHh-CCCCEEEEECCcccccCHHHHHHHHHHH-hCCCEEEEeccCCHHHHHHHHc-----
Confidence            57899999999999999999986 467887654432110   0010000000 1222221       23445554     


Q ss_pred             CCccEEEEccCch---hHHHHHHHHHHcC-CcEEE
Q 031216          105 KARAVVIDFTDAS---TVYDNVKQATAFG-MRSVV  135 (163)
Q Consensus       105 ~~~DVVIDfT~p~---~~~~~~~~al~~G-~~vVi  135 (163)
                       .+|+||.++.+.   .....+..|.+.| +.-++
T Consensus        77 -~~d~vi~~a~~~~~~~~~~l~~aa~~~g~v~~~v  110 (308)
T 1qyc_A           77 -NVDVVISTVGSLQIESQVNIIKAIKEVGTVKRFF  110 (308)
T ss_dssp             -TCSEEEECCCGGGSGGGHHHHHHHHHHCCCSEEE
T ss_pred             -CCCEEEECCcchhhhhHHHHHHHHHhcCCCceEe
Confidence             799999877543   3456777888888 65555

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=97.15  E-value=0.0019  Score=52.43  Aligned_cols=33  Identities=18%  Similarity=0.210  Sum_probs=26.8

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~   70 (163)
                      |.||+|+| .|.||..++..+.+ .+.+++ ++|++
T Consensus        15 ~~~I~VIG-~G~mG~~iA~~la~-~G~~V~-~~d~~   47 (302)
T 1f0y_A           15 VKHVTVIG-GGLMGAGIAQVAAA-TGHTVV-LVDQT   47 (302)
T ss_dssp             CCEEEEEC-CSHHHHHHHHHHHH-TTCEEE-EECSC
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHh-CCCeEE-EEECC
Confidence            46899999 59999999999874 588876 57753

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=97.15  E-value=0.00094  Score=50.51  Aligned_cols=33  Identities=27%  Similarity=0.396  Sum_probs=28.2

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~   69 (163)
                      |||.|+|++|.+|+.+++.+.+ .+.+++++..+
T Consensus         1 MkvlVtGatG~iG~~l~~~L~~-~g~~V~~~~R~   33 (221)
T 3ew7_A            1 MKIGIIGATGRAGSRILEEAKN-RGHEVTAIVRN   33 (221)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESC
T ss_pred             CeEEEEcCCchhHHHHHHHHHh-CCCEEEEEEcC
Confidence            5899999999999999999985 57899876553

>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=97.15  E-value=0.002  Score=51.94  Aligned_cols=39  Identities=13%  Similarity=0.222  Sum_probs=28.8

Q ss_pred             CCCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216           30 NPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (163)
Q Consensus        30 ~~~~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~   69 (163)
                      .|++.++||.|+|++|.+|+.+++.+.+ .+.+++++..+
T Consensus         9 ~~~~~~~~vlVTGatG~iG~~l~~~L~~-~g~~V~~~~r~   47 (335)
T 1rpn_A            9 HHGSMTRSALVTGITGQDGAYLAKLLLE-KGYRVHGLVAR   47 (335)
T ss_dssp             ------CEEEEETTTSHHHHHHHHHHHH-TTCEEEEEECC
T ss_pred             cccccCCeEEEECCCChHHHHHHHHHHH-CCCeEEEEeCC
Confidence            3677889999999999999999999985 57898876553

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=97.14  E-value=0.0024  Score=51.92  Aligned_cols=35  Identities=23%  Similarity=0.154  Sum_probs=29.5

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~   69 (163)
                      +++||.|+|++|.+|+.+++.+.+ .+.++.++..+
T Consensus        24 ~~~~vlVtGatG~iG~~l~~~L~~-~g~~V~~~~r~   58 (351)
T 3ruf_A           24 SPKTWLITGVAGFIGSNLLEKLLK-LNQVVIGLDNF   58 (351)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEECC
T ss_pred             CCCeEEEECCCcHHHHHHHHHHHH-CCCEEEEEeCC
Confidence            357999999999999999999985 57898876653

>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*

Probab=97.14  E-value=0.0017  Score=52.82  Aligned_cols=36  Identities=17%  Similarity=0.242  Sum_probs=28.6

Q ss_pred             CCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031216           32 PQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (163)
Q Consensus        32 ~~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid   68 (163)
                      +.+++||.|+|++|.+|+.+++.+.+ .+.+++++..
T Consensus        24 ~~~~~~vlVtGatG~iG~~l~~~L~~-~g~~V~~~~r   59 (343)
T 2b69_A           24 EKDRKRILITGGAGFVGSHLTDKLMM-DGHEVTVVDN   59 (343)
T ss_dssp             ---CCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEEC
T ss_pred             ccCCCEEEEEcCccHHHHHHHHHHHH-CCCEEEEEeC
Confidence            34568999999999999999999985 5789887654

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=97.12  E-value=0.0021  Score=54.19  Aligned_cols=106  Identities=14%  Similarity=0.094  Sum_probs=63.4

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT  114 (163)
                      +.||+|+| +|.||..+++.+.+ .+.++. ++|++..  ......    ..|+..+.++++++..-  ...+|+||.++
T Consensus         8 ~~kIgIIG-~G~mG~slA~~L~~-~G~~V~-~~dr~~~--~~~~a~----~~G~~~~~~~~e~~~~a--~~~aDlVilav   76 (341)
T 3ktd_A            8 SRPVCILG-LGLIGGSLLRDLHA-ANHSVF-GYNRSRS--GAKSAV----DEGFDVSADLEATLQRA--AAEDALIVLAV   76 (341)
T ss_dssp             SSCEEEEC-CSHHHHHHHHHHHH-TTCCEE-EECSCHH--HHHHHH----HTTCCEESCHHHHHHHH--HHTTCEEEECS
T ss_pred             CCEEEEEe-ecHHHHHHHHHHHH-CCCEEE-EEeCCHH--HHHHHH----HcCCeeeCCHHHHHHhc--ccCCCEEEEeC
Confidence            36899999 69999999999875 477776 5675421  111211    34556678888877410  01579999777


Q ss_pred             CchhHHHHHHHHH--HcCCcEEEeCCCCCHHHHHHHHHHh
Q 031216          115 DASTVYDNVKQAT--AFGMRSVVYVPHIQLETVSALSAFC  152 (163)
Q Consensus       115 ~p~~~~~~~~~al--~~G~~vVigttg~~~e~~~~L~~~A  152 (163)
                      +|....+.+....  ..| .+|+-..+......+.+.+..
T Consensus        77 P~~~~~~vl~~l~~~~~~-~iv~Dv~Svk~~i~~~~~~~~  115 (341)
T 3ktd_A           77 PMTAIDSLLDAVHTHAPN-NGFTDVVSVKTAVYDAVKARN  115 (341)
T ss_dssp             CHHHHHHHHHHHHHHCTT-CCEEECCSCSHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHccCCC-CEEEEcCCCChHHHHHHHHhC
Confidence            6655555443332  334 345444455555455555443

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=97.12  E-value=0.0017  Score=51.93  Aligned_cols=93  Identities=20%  Similarity=0.238  Sum_probs=55.5

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCC--cchhhhccCCCCCCcce----eCC---HHHHHhcccccC
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG--EDIGMVCDMEQPLEIPV----MSD---LTMVLGSISQSK  105 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g--~~~~~l~g~~~~~gi~v----~~~---l~ell~~~~~~~  105 (163)
                      |+||.|+|++|.+|+.+++.+.+ .+.++.++..+....  .....+.... ..++.+    ++|   +++++.      
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~-~g~~V~~~~R~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~d~~~l~~~~~------   75 (313)
T 1qyd_A            4 KSRVLIVGGTGYIGKRIVNASIS-LGHPTYVLFRPEVVSNIDKVQMLLYFK-QLGAKLIEASLDDHQRLVDALK------   75 (313)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHH-TTCCEEEECCSCCSSCHHHHHHHHHHH-TTTCEEECCCSSCHHHHHHHHT------
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHh-CCCcEEEEECCCcccchhHHHHHHHHH-hCCeEEEeCCCCCHHHHHHHHh------
Confidence            57899999999999999999986 478888655432110  0111110000 112222    123   445553      


Q ss_pred             CccEEEEccCc-------hhHHHHHHHHHHcC-CcEEE
Q 031216          106 ARAVVIDFTDA-------STVYDNVKQATAFG-MRSVV  135 (163)
Q Consensus       106 ~~DVVIDfT~p-------~~~~~~~~~al~~G-~~vVi  135 (163)
                      .+|+||.++.+       ......+..|.+.| +.-++
T Consensus        76 ~~d~vi~~a~~~~~~~~~~~~~~l~~aa~~~g~v~~~v  113 (313)
T 1qyd_A           76 QVDVVISALAGGVLSHHILEQLKLVEAIKEAGNIKRFL  113 (313)
T ss_dssp             TCSEEEECCCCSSSSTTTTTHHHHHHHHHHSCCCSEEE
T ss_pred             CCCEEEECCccccchhhHHHHHHHHHHHHhcCCCceEE
Confidence            79999987633       23456677888888 55444

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=97.11  E-value=0.001  Score=52.52  Aligned_cols=86  Identities=13%  Similarity=0.207  Sum_probs=53.3

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhc-CCcEEEEEEecCCCCcchhhhccCCCCCCcce-------eCCHHHHHhcccccCCc
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-------MSDLTMVLGSISQSKAR  107 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~-~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v-------~~~l~ell~~~~~~~~~  107 (163)
                      +||.|+|++|.+|+.+++.+.+. ++.++.++..+..   +...+..    .++.+       .+++++++      .++
T Consensus         1 ~~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~---~~~~l~~----~~~~~~~~D~~d~~~l~~~~------~~~   67 (287)
T 2jl1_A            1 FSIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVE---KASTLAD----QGVEVRHGDYNQPESLQKAF------AGV   67 (287)
T ss_dssp             CCEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTT---TTHHHHH----TTCEEEECCTTCHHHHHHHT------TTC
T ss_pred             CeEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHH---HHhHHhh----cCCeEEEeccCCHHHHHHHH------hcC
Confidence            37999999999999999999865 4889887654322   1111110    11111       12334455      379


Q ss_pred             cEEEEccCc--------hhHHHHHHHHHHcCC-cEE
Q 031216          108 AVVIDFTDA--------STVYDNVKQATAFGM-RSV  134 (163)
Q Consensus       108 DVVIDfT~p--------~~~~~~~~~al~~G~-~vV  134 (163)
                      |+||.++.+        ......++.+.+.|+ ++|
T Consensus        68 d~vi~~a~~~~~~~~n~~~~~~l~~a~~~~~~~~~v  103 (287)
T 2jl1_A           68 SKLLFISGPHYDNTLLIVQHANVVKAARDAGVKHIA  103 (287)
T ss_dssp             SEEEECCCCCSCHHHHHHHHHHHHHHHHHTTCSEEE
T ss_pred             CEEEEcCCCCcCchHHHHHHHHHHHHHHHcCCCEEE
Confidence            999987643        123455677778886 454

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=97.11  E-value=0.007  Score=51.61  Aligned_cols=113  Identities=13%  Similarity=0.146  Sum_probs=61.8

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCC--------------CCCCcceeCCHHHHHhcc
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDME--------------QPLEIPVMSDLTMVLGSI  101 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~--------------~~~gi~v~~~l~ell~~~  101 (163)
                      +||+|+| +|+||..++..+.+  +.++++ +|++.  ..+..+....              ....+..++++++++.  
T Consensus         1 MkI~VIG-~G~vG~~~A~~La~--G~~V~~-~d~~~--~~~~~l~~~~~~i~e~~l~~~~~~~~~~l~~t~~~~~~~~--   72 (402)
T 1dlj_A            1 MKIAVAG-SGYVGLSLGVLLSL--QNEVTI-VDILP--SKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYK--   72 (402)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHTT--TSEEEE-ECSCH--HHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHH--
T ss_pred             CEEEEEC-CCHHHHHHHHHHhC--CCEEEE-EECCH--HHHHHHHcCCCCcCCCCHHHHHHhccCcEEEeCCHHHHhc--
Confidence            4899999 69999999999875  788765 56431  1111111000              0112345678877774  


Q ss_pred             cccCCccEEEEccCch-----------hHHHHHHHH--HHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeEEcC
Q 031216          102 SQSKARAVVIDFTDAS-----------TVYDNVKQA--TAFGMRSVVYVPHIQLETVSALSAFCDKASMVSTG  161 (163)
Q Consensus       102 ~~~~~~DVVIDfT~p~-----------~~~~~~~~a--l~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv~tg  161 (163)
                          .+|+||.++.+.           ...+.+...  +..|.-||...| ......++|.+...+.+++++.
T Consensus        73 ----~aDvviiavpt~~~~~~~~~dl~~v~~v~~~i~~l~~~~iVV~~ST-~~~g~~~~l~~~~~~~~v~~~P  140 (402)
T 1dlj_A           73 ----EAELVIIATPTNYNSRINYFDTQHVETVIKEVLSVNSHATLIIKST-IPIGFITEMRQKFQTDRIIFSP  140 (402)
T ss_dssp             ----HCSEEEECCCCCEETTTTEECCHHHHHHHHHHHHHCSSCEEEECSC-CCTTHHHHHHHHTTCSCEEECC
T ss_pred             ----CCCEEEEecCCCcccCCCCccHHHHHHHHHHHHhhCCCCEEEEeCC-CCccHHHHHHHHhCCCeEEECC
Confidence                789998665332           133322222  445555554333 2222344555555444666543

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.10  E-value=0.0045  Score=46.30  Aligned_cols=107  Identities=14%  Similarity=0.056  Sum_probs=55.2

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcce-eC---CHHHHHhcccccCCccEE
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MS---DLTMVLGSISQSKARAVV  110 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v-~~---~l~ell~~~~~~~~~DVV  110 (163)
                      ..+|+|+| .|+||+.+++.+.+..+.+++ ++|++.  .....+.    ..++.+ +.   +.+ .+.+...-.++|+|
T Consensus        39 ~~~v~IiG-~G~~G~~~a~~L~~~~g~~V~-vid~~~--~~~~~~~----~~g~~~~~gd~~~~~-~l~~~~~~~~ad~v  109 (183)
T 3c85_A           39 HAQVLILG-MGRIGTGAYDELRARYGKISL-GIEIRE--EAAQQHR----SEGRNVISGDATDPD-FWERILDTGHVKLV  109 (183)
T ss_dssp             TCSEEEEC-CSHHHHHHHHHHHHHHCSCEE-EEESCH--HHHHHHH----HTTCCEEECCTTCHH-HHHTBCSCCCCCEE
T ss_pred             CCcEEEEC-CCHHHHHHHHHHHhccCCeEE-EEECCH--HHHHHHH----HCCCCEEEcCCCCHH-HHHhccCCCCCCEE
Confidence            35899999 699999999998753267777 456432  1222221    123332 22   322 22210001478999


Q ss_pred             EEccCchhH-HHHHHHHHHcC-CcEEEeCCCCCHHHHHHHHHH
Q 031216          111 IDFTDASTV-YDNVKQATAFG-MRSVVYVPHIQLETVSALSAF  151 (163)
Q Consensus       111 IDfT~p~~~-~~~~~~al~~G-~~vVigttg~~~e~~~~L~~~  151 (163)
                      |.++..... ...+..+.+.+ ...|+.. ..+.+..+.|.++
T Consensus       110 i~~~~~~~~~~~~~~~~~~~~~~~~ii~~-~~~~~~~~~l~~~  151 (183)
T 3c85_A          110 LLAMPHHQGNQTALEQLQRRNYKGQIAAI-AEYPDQLEGLLES  151 (183)
T ss_dssp             EECCSSHHHHHHHHHHHHHTTCCSEEEEE-ESSHHHHHHHHHH
T ss_pred             EEeCCChHHHHHHHHHHHHHCCCCEEEEE-ECCHHHHHHHHHc
Confidence            966644333 33344444544 2233322 2345555555443

>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A

Probab=97.10  E-value=0.0027  Score=51.20  Aligned_cols=33  Identities=24%  Similarity=0.218  Sum_probs=28.8

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid   68 (163)
                      +||.|+|++|.+|+.+++.+.+.++.+++++..
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r   33 (345)
T 2bll_A            1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDI   33 (345)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEES
T ss_pred             CeEEEECCCcHHHHHHHHHHHHhCCCEEEEEeC
Confidence            489999999999999999998776899887654

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=97.09  E-value=0.0016  Score=52.10  Aligned_cols=95  Identities=20%  Similarity=0.268  Sum_probs=56.1

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC----------------Ccc-hhhh---c-cCCCCCCccee--
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV----------------GED-IGMV---C-DMEQPLEIPVM--   91 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~----------------g~~-~~~l---~-g~~~~~gi~v~--   91 (163)
                      ..||.|+| .|.+|..+++.+.. .|+.=+.++|++..                |++ +..+   + .+.....+..+  
T Consensus        31 ~~~VlVvG-~Gg~G~~va~~La~-~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~~  108 (249)
T 1jw9_B           31 DSRVLIVG-LGGLGCAASQYLAS-AGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNA  108 (249)
T ss_dssp             HCEEEEEC-CSHHHHHHHHHHHH-HTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECS
T ss_pred             CCeEEEEe-eCHHHHHHHHHHHH-cCCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCCCcEEEEEec
Confidence            36899999 59999999999874 57744457885421                111 1000   0 00001112111  


Q ss_pred             ----CCHHHHHhcccccCCccEEEEccCchhH-HHHHHHHHHcCCcEEEeC
Q 031216           92 ----SDLTMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYV  137 (163)
Q Consensus        92 ----~~l~ell~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigt  137 (163)
                          .++++++.      ++|+|||++..... ......|.+.|+++|.+.
T Consensus       109 ~~~~~~~~~~~~------~~DvVi~~~d~~~~~~~l~~~~~~~~~p~i~~~  153 (249)
T 1jw9_B          109 LLDDAELAALIA------EHDLVLDCTDNVAVRNQLNAGCFAAKVPLVSGA  153 (249)
T ss_dssp             CCCHHHHHHHHH------TSSEEEECCSSHHHHHHHHHHHHHHTCCEEEEE
T ss_pred             cCCHhHHHHHHh------CCCEEEEeCCCHHHHHHHHHHHHHcCCCEEEee
Confidence                12344553      89999998844333 455677888999998654

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=97.09  E-value=0.0034  Score=52.93  Aligned_cols=91  Identities=14%  Similarity=0.061  Sum_probs=52.9

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe---cCCCCcchhhhc---cC----CCCCC--------cc-eeCCHH
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID---SHSVGEDIGMVC---DM----EQPLE--------IP-VMSDLT   95 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid---~~~~g~~~~~l~---g~----~~~~g--------i~-v~~~l~   95 (163)
                      |+||+|+| .|.||..++..+.+..+.++.. ++   +..  ..+....   +.    ....+        +. ++++++
T Consensus         2 ~mkI~ViG-aG~~G~~~a~~La~~~G~~V~~-~~~~~r~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (404)
T 3c7a_A            2 TVKVCVCG-GGNGAHTLSGLAASRDGVEVRV-LTLFADEA--ERWTKALGADELTVIVNEKDGTQTEVKSRPKVITKDPE   77 (404)
T ss_dssp             CEEEEEEC-CSHHHHHHHHHHTTSTTEEEEE-ECCSTTHH--HHHHHHHTTSCEEEEEECSSSCEEEEEECCSEEESCHH
T ss_pred             CceEEEEC-CCHHHHHHHHHHHhCCCCEEEE-EeCCCCcH--HHHHHHHhhccceeeeecCCCccceeeccceEEeCCHH
Confidence            57999999 5999999999886546888774 45   211  1111110   00    00001        22 567888


Q ss_pred             HHHhcccccCCccEEEEccCchhHHHHHHHH---HHcCCcEEE
Q 031216           96 MVLGSISQSKARAVVIDFTDASTVYDNVKQA---TAFGMRSVV  135 (163)
Q Consensus        96 ell~~~~~~~~~DVVIDfT~p~~~~~~~~~a---l~~G~~vVi  135 (163)
                      +++.      .+|+||.++.+....+.+...   +..+..||.
T Consensus        78 ~a~~------~aD~Vilav~~~~~~~v~~~l~~~l~~~~ivv~  114 (404)
T 3c7a_A           78 IAIS------GADVVILTVPAFAHEGYFQAMAPYVQDSALIVG  114 (404)
T ss_dssp             HHHT------TCSEEEECSCGGGHHHHHHHHTTTCCTTCEEEE
T ss_pred             HHhC------CCCEEEEeCchHHHHHHHHHHHhhCCCCcEEEE
Confidence            8774      899999666555544444433   223554554

>4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens}

Probab=97.08  E-value=0.0032  Score=49.61  Aligned_cols=30  Identities=17%  Similarity=0.320  Sum_probs=25.2

Q ss_pred             CCCCCCeeEEEEcCCCHHHHHHHHHHHhcC
Q 031216           30 NPPQSNIKVIINGAVKEIGRAAVIAVTKAR   59 (163)
Q Consensus        30 ~~~~~~irV~VvGa~G~mG~~i~~~i~~~~   59 (163)
                      |+.-+|+||.|+|++|.+|+.+++.+.+..
T Consensus         1 ~~~~~~~~vlVtGatG~iG~~l~~~L~~~g   30 (319)
T 4b8w_A            1 NLYFQSMRILVTGGSGLVGKAIQKVVADGA   30 (319)
T ss_dssp             CCCCCCCEEEEETCSSHHHHHHHHHHHTTT
T ss_pred             CccccCCeEEEECCCcHHHHHHHHHHHhcC
Confidence            344567899999999999999999998653

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=97.08  E-value=0.0027  Score=53.52  Aligned_cols=121  Identities=16%  Similarity=0.056  Sum_probs=60.0

Q ss_pred             cccccccccceeeeccCC---CCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcc
Q 031216           13 HHISQNVKAKRFISCSTN---PPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP   89 (163)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~---~~~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~   89 (163)
                      ....++++..+|-.....   ..-...+|+|+| .|+||+.+++.+. .-|+++. ++|+...  +         ..+..
T Consensus       146 ~~~~~~~~~g~W~~~~~~~~~~~l~gktiGIIG-lG~IG~~vA~~l~-~~G~~V~-~~dr~~~--~---------~~~~~  211 (340)
T 4dgs_A          146 GDGDRLVREGRWAAGEQLPLGHSPKGKRIGVLG-LGQIGRALASRAE-AFGMSVR-YWNRSTL--S---------GVDWI  211 (340)
T ss_dssp             HHHHHHHHTTCC------CCCCCCTTCEEEEEC-CSHHHHHHHHHHH-TTTCEEE-EECSSCC--T---------TSCCE
T ss_pred             HHHHHHHhcCCcccccCcCccccccCCEEEEEC-CCHHHHHHHHHHH-HCCCEEE-EEcCCcc--c---------ccCce
Confidence            333455555555321011   122347999999 7999999999987 5688876 4665321  0         11233


Q ss_pred             eeCCHHHHHhcccccCCccEEEEccCch-hHH----HHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhh
Q 031216           90 VMSDLTMVLGSISQSKARAVVIDFTDAS-TVY----DNVKQATAFGMRSVVYVPHIQLETVSALSAFCDK  154 (163)
Q Consensus        90 v~~~l~ell~~~~~~~~~DVVIDfT~p~-~~~----~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~  154 (163)
                      .+.++++++.      ..|+|+...+.. ...    +.....++.|.-+|--..|-- .+.+.|.++.++
T Consensus       212 ~~~sl~ell~------~aDvVil~vP~t~~t~~li~~~~l~~mk~gailIN~aRG~v-vde~aL~~aL~~  274 (340)
T 4dgs_A          212 AHQSPVDLAR------DSDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVARGNV-VDEDALIEALKS  274 (340)
T ss_dssp             ECSSHHHHHH------TCSEEEECC----------CHHHHHHTTTTCEEEECSCC---------------
T ss_pred             ecCCHHHHHh------cCCEEEEeCCCCHHHHHHhhHHHHhcCCCCCEEEECCCCcc-cCHHHHHHHHHc
Confidence            4579999986      899999554311 112    223344556655554333432 223445444443

>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I*

Probab=97.08  E-value=0.0011  Score=59.00  Aligned_cols=110  Identities=12%  Similarity=0.066  Sum_probs=66.8

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhc-----CCcEEEEEEecCCCCcchhhhccCCCCCCcce----eCCHHHHHhcccccCC
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKA-----RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV----MSDLTMVLGSISQSKA  106 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~-----~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v----~~~l~ell~~~~~~~~  106 (163)
                      .||+|+| +|.||..+++.+.+.     .+++++...++.....+...      ..|+.+    ..++++++.      .
T Consensus        55 KkIgIIG-lGsMG~AmA~nLr~s~~~~g~G~~ViVg~r~~sks~e~A~------e~G~~v~d~ta~s~aEAa~------~  121 (525)
T 3fr7_A           55 KQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKIGLRKGSKSFDEAR------AAGFTEESGTLGDIWETVS------G  121 (525)
T ss_dssp             SEEEEEC-CTTHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHH------HTTCCTTTTCEEEHHHHHH------H
T ss_pred             CEEEEEe-EhHHHHHHHHHHHhcccccCCCCEEEEEeCCchhhHHHHH------HCCCEEecCCCCCHHHHHh------c
Confidence            6899999 799999999999865     37887755554221122222      223332    257888875      8


Q ss_pred             ccEEEEccCchhHHHH---HHHHHHcCCcEEEeCCCCCHHHHHH-HHHHhhhcCeEE
Q 031216          107 RAVVIDFTDASTVYDN---VKQATAFGMRSVVYVPHIQLETVSA-LSAFCDKASMVS  159 (163)
Q Consensus       107 ~DVVIDfT~p~~~~~~---~~~al~~G~~vVigttg~~~e~~~~-L~~~A~~~~Vv~  159 (163)
                      .|+||..+.|....+.   +...++.|.- |+=..|++-...+. ....-+..+|+.
T Consensus       122 ADVVILaVP~~~~~eVl~eI~p~LK~GaI-Ls~AaGf~I~~le~~~i~~p~dv~VVr  177 (525)
T 3fr7_A          122 SDLVLLLISDAAQADNYEKIFSHMKPNSI-LGLSHGFLLGHLQSAGLDFPKNISVIA  177 (525)
T ss_dssp             CSEEEECSCHHHHHHHHHHHHHHSCTTCE-EEESSSHHHHHHHHTTCCCCTTSEEEE
T ss_pred             CCEEEECCChHHHHHHHHHHHHhcCCCCe-EEEeCCCCHHHHhhhcccCCCCCcEEE
Confidence            9999977766554333   3344455654 45467886554332 223334455554

>2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A

Probab=97.07  E-value=0.0028  Score=54.99  Aligned_cols=113  Identities=14%  Similarity=0.186  Sum_probs=73.2

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhhccCCC------CC-CcceeCCHHHHHhcc
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMVCDMEQ------PL-EIPVMSDLTMVLGSI  101 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~-----~~g~~~~~l~g~~~------~~-gi~v~~~l~ell~~~  101 (163)
                      ...||+|.| .|.+|+..++.+.+..+.+++++.|+.     ..|-|..++.....      .+ +.. +-+.++++.  
T Consensus       208 ~g~~vaVqG-~GnVG~~~a~~L~e~~GakvVavsD~~G~i~dp~Gld~~~l~~~~~~~g~l~~y~~a~-~~~~~eil~--  283 (415)
T 2tmg_A          208 KKATVAVQG-FGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGE-RITNEELLE--  283 (415)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTCCEEEEEECSSCEEECTTCCCHHHHHHHHHHSSCSTTCSSSE-EECHHHHTT--
T ss_pred             CCCEEEEEC-CcHHHHHHHHHHHHhcCCEEEEEEeCCCeEECCCCCCHHHHHHHHHhhCCcccCCCce-EcCchhhhc--
Confidence            347899999 799999999988753799999999963     44555544332110      00 111 225677776  


Q ss_pred             cccCCccEEEEccCchhH-HHHHHHHHHcCCcEEEeCC--CCCHHHHHHHHHHhhhcCeEEc
Q 031216          102 SQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMVST  160 (163)
Q Consensus       102 ~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigtt--g~~~e~~~~L~~~A~~~~Vv~t  160 (163)
                         .++|+++.++..+.. .+++.   +-+..+|++-.  .++++..+.|    ++.+|++-
T Consensus       284 ---~~~DIliP~A~~n~i~~~~a~---~l~ak~V~EgAN~p~t~~a~~~l----~~~Gi~~~  335 (415)
T 2tmg_A          284 ---LDVDILVPAALEGAIHAGNAE---RIKAKAVVEGANGPTTPEADEIL----SRRGILVV  335 (415)
T ss_dssp             ---CSCSEEEECSSTTSBCHHHHT---TCCCSEEECCSSSCBCHHHHHHH----HHTTCEEE
T ss_pred             ---CCCcEEEecCCcCccCcccHH---HcCCeEEEeCCCcccCHHHHHHH----HHCCCEEE
Confidence               599999998866554 34444   34888888766  4565544433    35567664

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=97.07  E-value=0.0024  Score=53.23  Aligned_cols=111  Identities=10%  Similarity=0.015  Sum_probs=63.0

Q ss_pred             cccccccccceeeeccCC----CCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCc
Q 031216           13 HHISQNVKAKRFISCSTN----PPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI   88 (163)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~----~~~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi   88 (163)
                      +...++++..+|-.....    ..-...+|+|+| .|+||+.+++.+. .-++++. ++|+...  ......    ..++
T Consensus       129 ~~~~~~~~~~~w~~~~~~~~~~~~l~g~~vgIIG-~G~iG~~iA~~l~-~~G~~V~-~~d~~~~--~~~~~~----~~g~  199 (330)
T 2gcg_A          129 PEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIG-LGRIGQAIARRLK-PFGVQRF-LYTGRQP--RPEEAA----EFQA  199 (330)
T ss_dssp             HHHHHHHHTTCCCSCCTTSSCBCCCTTCEEEEEC-CSHHHHHHHHHHG-GGTCCEE-EEESSSC--CHHHHH----TTTC
T ss_pred             HHHHHHHHcCCCcccCcccccCcCCCCCEEEEEC-cCHHHHHHHHHHH-HCCCEEE-EECCCCc--chhHHH----hcCc
Confidence            334455666666321110    122347899999 6999999999987 4578876 4664321  111111    2344


Q ss_pred             ceeCCHHHHHhcccccCCccEEEEccCchh-H---H-HHHHHHHHcCCcEEEeCCC
Q 031216           89 PVMSDLTMVLGSISQSKARAVVIDFTDAST-V---Y-DNVKQATAFGMRSVVYVPH  139 (163)
Q Consensus        89 ~v~~~l~ell~~~~~~~~~DVVIDfT~p~~-~---~-~~~~~al~~G~~vVigttg  139 (163)
                      ... ++++++.      ..|+|+....+.. .   . +.....++.|.-+|.-.+|
T Consensus       200 ~~~-~l~e~l~------~aDvVi~~vp~~~~t~~~i~~~~~~~mk~gailIn~srg  248 (330)
T 2gcg_A          200 EFV-STPELAA------QSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRG  248 (330)
T ss_dssp             EEC-CHHHHHH------HCSEEEECCCCCTTTTTCBSHHHHHHSCTTCEEEECSCG
T ss_pred             eeC-CHHHHHh------hCCEEEEeCCCChHHHHhhCHHHHhcCCCCcEEEECCCC
Confidence            433 8888885      8999997664321 1   1 2233445566555543334

>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris}

Probab=97.06  E-value=0.002  Score=51.39  Aligned_cols=34  Identities=26%  Similarity=0.247  Sum_probs=28.6

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhc-CCcEEEEEEe
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAID   68 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~-~~~eLvgvid   68 (163)
                      ++||.|+|++|.+|+.+++.+.+. ++.+++++..
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r   36 (312)
T 2yy7_A            2 NPKILIIGACGQIGTELTQKLRKLYGTENVIASDI   36 (312)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHHHCGGGEEEEES
T ss_pred             CceEEEECCccHHHHHHHHHHHHhCCCCEEEEEcC
Confidence            368999999999999999999876 4788887654

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=97.06  E-value=0.0036  Score=49.93  Aligned_cols=90  Identities=11%  Similarity=0.023  Sum_probs=54.1

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcce----e---CCHHHHHhcccccCCc
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV----M---SDLTMVLGSISQSKAR  107 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v----~---~~l~ell~~~~~~~~~  107 (163)
                      +.+|.|+|++|.+|+.+++.+.+..+.++.++..+.. ......+.    ..++.+    +   +++++++.      .+
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~-~~~~~~l~----~~~~~~~~~D~~d~~~l~~~~~------~~   73 (299)
T 2wm3_A            5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPR-KKAAKELR----LQGAEVVQGDQDDQVIMELALN------GA   73 (299)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTT-SHHHHHHH----HTTCEEEECCTTCHHHHHHHHT------TC
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCC-CHHHHHHH----HCCCEEEEecCCCHHHHHHHHh------cC
Confidence            3689999999999999999998765488887654322 11111111    112211    1   23445553      79


Q ss_pred             cEEEEccCch----------hHHHHHHHHHHcCCc-EEE
Q 031216          108 AVVIDFTDAS----------TVYDNVKQATAFGMR-SVV  135 (163)
Q Consensus       108 DVVIDfT~p~----------~~~~~~~~al~~G~~-vVi  135 (163)
                      |+||.++.+.          .....+..+.+.|+. +|.
T Consensus        74 d~vi~~a~~~~~~~~~~~~~~~~~~~~aa~~~gv~~iv~  112 (299)
T 2wm3_A           74 YATFIVTNYWESCSQEQEVKQGKLLADLARRLGLHYVVY  112 (299)
T ss_dssp             SEEEECCCHHHHTCHHHHHHHHHHHHHHHHHHTCSEEEE
T ss_pred             CEEEEeCCCCccccchHHHHHHHHHHHHHHHcCCCEEEE
Confidence            9999876421          123455667777864 444

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*

Probab=97.06  E-value=0.0013  Score=54.50  Aligned_cols=35  Identities=20%  Similarity=0.236  Sum_probs=29.0

Q ss_pred             CCCeeEEEEcCCCHHHHHHHHHHHhcCC-cEEEEEEe
Q 031216           33 QSNIKVIINGAVKEIGRAAVIAVTKARG-MEVAGAID   68 (163)
Q Consensus        33 ~~~irV~VvGa~G~mG~~i~~~i~~~~~-~eLvgvid   68 (163)
                      .+++||.|+|++|.+|+.+++.+.+ .+ .+++++..
T Consensus        30 ~~~~~ilVtGatG~iG~~l~~~L~~-~g~~~V~~~~r   65 (377)
T 2q1s_A           30 LANTNVMVVGGAGFVGSNLVKRLLE-LGVNQVHVVDN   65 (377)
T ss_dssp             GTTCEEEEETTTSHHHHHHHHHHHH-TTCSEEEEECC
T ss_pred             hCCCEEEEECCccHHHHHHHHHHHH-cCCceEEEEEC
Confidence            3567999999999999999999986 46 88887543

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=97.04  E-value=0.0032  Score=48.77  Aligned_cols=75  Identities=17%  Similarity=0.124  Sum_probs=47.1

Q ss_pred             CCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEE
Q 031216           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (163)
Q Consensus        33 ~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVID  112 (163)
                      ..++||+|+| .|.||+.+++.+.+ .+.++. ++|+..             .           .+      .++|+||.
T Consensus        17 ~~~~~I~iiG-~G~mG~~la~~l~~-~g~~V~-~~~~~~-------------~-----------~~------~~aD~vi~   63 (209)
T 2raf_A           17 FQGMEITIFG-KGNMGQAIGHNFEI-AGHEVT-YYGSKD-------------Q-----------AT------TLGEIVIM   63 (209)
T ss_dssp             ---CEEEEEC-CSHHHHHHHHHHHH-TTCEEE-EECTTC-------------C-----------CS------SCCSEEEE
T ss_pred             cCCCEEEEEC-CCHHHHHHHHHHHH-CCCEEE-EEcCCH-------------H-----------Hh------ccCCEEEE
Confidence            3457999999 69999999999874 567766 345431             0           12      47899886


Q ss_pred             ccCchhHHHHHH---HHHHcCCcEEEeCCCCC
Q 031216          113 FTDASTVYDNVK---QATAFGMRSVVYVPHIQ  141 (163)
Q Consensus       113 fT~p~~~~~~~~---~al~~G~~vVigttg~~  141 (163)
                      +..+....+.+.   ..++ +..+|.-++|++
T Consensus        64 av~~~~~~~v~~~l~~~~~-~~~vi~~~~g~~   94 (209)
T 2raf_A           64 AVPYPALAALAKQYATQLK-GKIVVDITNPLN   94 (209)
T ss_dssp             CSCHHHHHHHHHHTHHHHT-TSEEEECCCCBC
T ss_pred             cCCcHHHHHHHHHHHHhcC-CCEEEEECCCCC
Confidence            665544444433   2344 666665555665

>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*

Probab=97.03  E-value=0.00016  Score=61.20  Aligned_cols=93  Identities=14%  Similarity=0.077  Sum_probs=60.3

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccC-CCCCC--cceeCCHHHHHhcccccCCccEEE
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDM-EQPLE--IPVMSDLTMVLGSISQSKARAVVI  111 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~-~~~~g--i~v~~~l~ell~~~~~~~~~DVVI  111 (163)
                      ..+|+|+| +|.||+.+++.+....+.+-+.+++++.  ..+.++... ....+  +.+++++++++.      ++|+||
T Consensus       129 ~~~v~iIG-aG~~a~~~a~al~~~~~~~~V~V~~r~~--~~a~~la~~~~~~~g~~~~~~~~~~eav~------~aDiVi  199 (350)
T 1x7d_A          129 ARKMALIG-NGAQSEFQALAFHKHLGIEEIVAYDTDP--LATAKLIANLKEYSGLTIRRASSVAEAVK------GVDIIT  199 (350)
T ss_dssp             CCEEEEEC-CSTTHHHHHHHHHHHSCCCEEEEECSSH--HHHHHHHHHHTTCTTCEEEECSSHHHHHT------TCSEEE
T ss_pred             CCeEEEEC-CcHHHHHHHHHHHHhCCCcEEEEEcCCH--HHHHHHHHHHHhccCceEEEeCCHHHHHh------cCCEEE
Confidence            46899999 6999999999887666787788888653  122222210 00113  445789999885      799999


Q ss_pred             EccCchhHHHHH-HHHHHcCCcEEEe
Q 031216          112 DFTDASTVYDNV-KQATAFGMRSVVY  136 (163)
Q Consensus       112 DfT~p~~~~~~~-~~al~~G~~vVig  136 (163)
                      .+|+.....+.+ ...++.|++++.-
T Consensus       200 ~aTps~~~~pvl~~~~l~~G~~V~~v  225 (350)
T 1x7d_A          200 TVTADKAYATIITPDMLEPGMHLNAV  225 (350)
T ss_dssp             ECCCCSSEEEEECGGGCCTTCEEEEC
T ss_pred             EeccCCCCCceecHHHcCCCCEEEEC
Confidence            666433211111 2456789998853

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=97.03  E-value=0.0033  Score=52.74  Aligned_cols=86  Identities=12%  Similarity=0.010  Sum_probs=55.9

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEc
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDf  113 (163)
                      ...+|+|+| .|+||+.+++.+. .-|+++. ++|+....           ..++..+.++++++.      ..|+|+..
T Consensus       163 ~g~~vgIIG-~G~iG~~vA~~l~-~~G~~V~-~~dr~~~~-----------~~g~~~~~~l~ell~------~aDvVil~  222 (333)
T 3ba1_A          163 SGKRVGIIG-LGRIGLAVAERAE-AFDCPIS-YFSRSKKP-----------NTNYTYYGSVVELAS------NSDILVVA  222 (333)
T ss_dssp             TTCCEEEEC-CSHHHHHHHHHHH-TTTCCEE-EECSSCCT-----------TCCSEEESCHHHHHH------TCSEEEEC
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHH-HCCCEEE-EECCCchh-----------ccCceecCCHHHHHh------cCCEEEEe
Confidence            346899999 6999999999987 5678876 46653210           113344679999885      89999966


Q ss_pred             cCchh-H---H-HHHHHHHHcCCcEEEeCCC
Q 031216          114 TDAST-V---Y-DNVKQATAFGMRSVVYVPH  139 (163)
Q Consensus       114 T~p~~-~---~-~~~~~al~~G~~vVigttg  139 (163)
                      ..+.. .   . +.....++.|.-+|.-..|
T Consensus       223 vP~~~~t~~li~~~~l~~mk~gailIn~srG  253 (333)
T 3ba1_A          223 CPLTPETTHIINREVIDALGPKGVLINIGRG  253 (333)
T ss_dssp             SCCCGGGTTCBCHHHHHHHCTTCEEEECSCG
T ss_pred             cCCChHHHHHhhHHHHhcCCCCCEEEECCCC
Confidence            64422 2   1 2233456667665543344

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=97.03  E-value=0.0019  Score=54.38  Aligned_cols=69  Identities=12%  Similarity=0.050  Sum_probs=46.4

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEc
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDf  113 (163)
                      ...+|+|+| .|+||+.+++.+...-++++. ++|+.....+...      ..++...+++++++.      ..|+|+..
T Consensus       162 ~g~~vgIIG-~G~IG~~vA~~l~~~~G~~V~-~~d~~~~~~~~~~------~~g~~~~~~l~ell~------~aDvVil~  227 (348)
T 2w2k_A          162 RGHVLGAVG-LGAIQKEIARKAVHGLGMKLV-YYDVAPADAETEK------ALGAERVDSLEELAR------RSDCVSVS  227 (348)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTCCEEE-EECSSCCCHHHHH------HHTCEECSSHHHHHH------HCSEEEEC
T ss_pred             CCCEEEEEE-ECHHHHHHHHHHHHhcCCEEE-EECCCCcchhhHh------hcCcEEeCCHHHHhc------cCCEEEEe
Confidence            346899999 799999999998624678876 4675432111111      123444468999885      89999976


Q ss_pred             cCc
Q 031216          114 TDA  116 (163)
Q Consensus       114 T~p  116 (163)
                      ..+
T Consensus       228 vp~  230 (348)
T 2w2k_A          228 VPY  230 (348)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            644

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=97.03  E-value=0.0023  Score=51.23  Aligned_cols=86  Identities=14%  Similarity=0.154  Sum_probs=49.7

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEccC
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT~  115 (163)
                      +||.|+|++|.+|+.+++.+.+ .+.+++++..+...+   . +.    ..++.-.+++++++..    .++|+||.+..
T Consensus         3 ~~vlVtGatG~iG~~l~~~L~~-~g~~V~~~~r~~~~~---~-~~----~~Dl~d~~~~~~~~~~----~~~d~vih~A~   69 (315)
T 2ydy_A            3 RRVLVTGATGLLGRAVHKEFQQ-NNWHAVGCGFRRARP---K-FE----QVNLLDSNAVHHIIHD----FQPHVIVHCAA   69 (315)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHT-TTCEEEEEC--------------------------CHHHHHH----HCCSEEEECC-
T ss_pred             CeEEEECCCcHHHHHHHHHHHh-CCCeEEEEccCCCCC---C-eE----EecCCCHHHHHHHHHh----hCCCEEEECCc
Confidence            6899999999999999999985 578888764322110   0 11    1122223456677752    26999998752


Q ss_pred             ch------------------hHHHHHHHHHHcCCcEE
Q 031216          116 AS------------------TVYDNVKQATAFGMRSV  134 (163)
Q Consensus       116 p~------------------~~~~~~~~al~~G~~vV  134 (163)
                      +.                  .....++.+.+.|.++|
T Consensus        70 ~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v  106 (315)
T 2ydy_A           70 ERRPDVVENQPDAASQLNVDASGNLAKEAAAVGAFLI  106 (315)
T ss_dssp             ------------------CHHHHHHHHHHHHHTCEEE
T ss_pred             ccChhhhhcCHHHHHHHHHHHHHHHHHHHHHcCCeEE
Confidence            21                  12345667777787766

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=97.03  E-value=0.0023  Score=52.70  Aligned_cols=98  Identities=13%  Similarity=0.095  Sum_probs=57.1

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCC-------cEEEEEEecCCC--Cc-chhhhc----------cCCCCCCcceeCCH
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARG-------MEVAGAIDSHSV--GE-DIGMVC----------DMEQPLEIPVMSDL   94 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~-------~eLvgvid~~~~--g~-~~~~l~----------g~~~~~gi~v~~~l   94 (163)
                      ++||+|+| .|.||..++..+.+. +       .++. +++++..  ++ ....+.          +..-..++..++|+
T Consensus         8 ~mkI~iIG-~G~mG~~~a~~l~~~-g~~~~~~~~~V~-~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   84 (354)
T 1x0v_A            8 SKKVCIVG-SGNWGSAIAKIVGGN-AAQLAQFDPRVT-MWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVAVPDV   84 (354)
T ss_dssp             CEEEEEEC-CSHHHHHHHHHHHHH-HHHCTTEEEEEE-EECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEEESSH
T ss_pred             CCeEEEEC-CCHHHHHHHHHHHhc-CCcccCCCCeEE-EEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeEEEcCH
Confidence            36999999 599999999988753 4       5554 5564321  00 111111          00001235556888


Q ss_pred             HHHHhcccccCCccEEEEccCchhHHHHHHHH---HHcCCcEEEeCCCCC
Q 031216           95 TMVLGSISQSKARAVVIDFTDASTVYDNVKQA---TAFGMRSVVYVPHIQ  141 (163)
Q Consensus        95 ~ell~~~~~~~~~DVVIDfT~p~~~~~~~~~a---l~~G~~vVigttg~~  141 (163)
                      ++++.      ++|+||.++.+....+.+...   +..+..+|.-+.|++
T Consensus        85 ~~~~~------~aD~Vilav~~~~~~~v~~~i~~~l~~~~ivv~~~~Gi~  128 (354)
T 1x0v_A           85 VQAAE------DADILIFVVPHQFIGKICDQLKGHLKANATGISLIKGVD  128 (354)
T ss_dssp             HHHHT------TCSEEEECCCGGGHHHHHHHHTTCSCTTCEEEECCCCBC
T ss_pred             HHHHc------CCCEEEEeCCHHHHHHHHHHHHhhCCCCCEEEEECCccC
Confidence            88774      899999666554444444433   233555666555665

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=97.03  E-value=0.0049  Score=51.12  Aligned_cols=36  Identities=22%  Similarity=0.162  Sum_probs=30.1

Q ss_pred             CCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (163)
Q Consensus        33 ~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~   69 (163)
                      .+|+||.|+|++|.+|+.+++.+.+ .+.+++++..+
T Consensus        27 ~~~~~vlVtGatG~iG~~l~~~L~~-~g~~V~~~~r~   62 (379)
T 2c5a_A           27 SENLKISITGAGGFIASHIARRLKH-EGHYVIASDWK   62 (379)
T ss_dssp             TSCCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESS
T ss_pred             ccCCeEEEECCccHHHHHHHHHHHH-CCCeEEEEECC
Confidence            3578999999999999999999985 57898876543

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=97.02  E-value=0.0016  Score=53.94  Aligned_cols=79  Identities=19%  Similarity=0.175  Sum_probs=50.8

Q ss_pred             cccccccceeeeccCCCCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCH
Q 031216           15 ISQNVKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDL   94 (163)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l   94 (163)
                      ..++++..+|-.......-...+|+|+| .|+||+.+++.+. .-++++.+ +|+... ..           +...+.++
T Consensus       104 ~~~~~~~g~w~~~~~~~~l~g~~vgIIG-~G~IG~~~A~~l~-~~G~~V~~-~dr~~~-~~-----------~~~~~~~l  168 (303)
T 1qp8_A          104 YGEKMKRGDYGRDVEIPLIQGEKVAVLG-LGEIGTRVGKILA-ALGAQVRG-FSRTPK-EG-----------PWRFTNSL  168 (303)
T ss_dssp             HHHHHHTTCCCCCSCCCCCTTCEEEEES-CSTHHHHHHHHHH-HTTCEEEE-ECSSCC-CS-----------SSCCBSCS
T ss_pred             HHHHHHcCCCCCCCCCCCCCCCEEEEEc-cCHHHHHHHHHHH-HCCCEEEE-ECCCcc-cc-----------CcccCCCH
Confidence            3445566666221112233457899999 7999999999987 46888764 665332 10           11234688


Q ss_pred             HHHHhcccccCCccEEEEcc
Q 031216           95 TMVLGSISQSKARAVVIDFT  114 (163)
Q Consensus        95 ~ell~~~~~~~~~DVVIDfT  114 (163)
                      ++++.      ..|+|+...
T Consensus       169 ~ell~------~aDvV~l~~  182 (303)
T 1qp8_A          169 EEALR------EARAAVCAL  182 (303)
T ss_dssp             HHHHT------TCSEEEECC
T ss_pred             HHHHh------hCCEEEEeC
Confidence            89885      899988655

>1vjp_A MYO-inositol-1-phosphate synthase-related protein; TM1419, structural genomics, JCSG, PSI, protein structure initiative; HET: NAD; 1.70A {Thermotoga maritima} PDB: 3cin_A*

Probab=97.01  E-value=0.0037  Score=53.84  Aligned_cols=126  Identities=16%  Similarity=0.234  Sum_probs=81.4

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcC--------------------CcEEEEEEec--CCCCcchhhhcc-----CCCC-
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKAR--------------------GMEVAGAIDS--HSVGEDIGMVCD-----MEQP-   85 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~--------------------~~eLvgvid~--~~~g~~~~~l~g-----~~~~-   85 (163)
                      -|+||.|+| .|+..+.+++-+....                    |+|+|+++|.  +.+|+++.+..-     .+ + 
T Consensus        12 ~~~~~~~~G-vGn~ASslvqGie~yk~~~~~~~Gl~~~~~~~y~~~DievvaafDVd~~KVGkdl~eai~~~pn~Vp-~~   89 (394)
T 1vjp_A           12 HMVKVLILG-QGYVASTFVAGLEKLRKGEIEPYGVPLARELPIGFEDIKIVGSYDVDRAKIGKKLSEVVKQYWNDVD-SL   89 (394)
T ss_dssp             CCEEEEEEC-CSHHHHHHHHHHHHHHTTSSCCTTCTTTTCSSSCGGGEEEEEEEECBTTTTTSBHHHHHHHHCTTCC-CC
T ss_pred             heeeeEEEE-ehHHHHHHHHHHHHHHcCCCCCccccchhccCCCcCceEEEEEEeccccccCCcHHHHHhhCcCCCC-cc
Confidence            479999999 6999999887654211                    3799999993  457777654321     11 1 


Q ss_pred             -CCccee-----C----------------CHHHHHhcc---cccCCccEEEEcc------Cch-----------------
Q 031216           86 -LEIPVM-----S----------------DLTMVLGSI---SQSKARAVVIDFT------DAS-----------------  117 (163)
Q Consensus        86 -~gi~v~-----~----------------~l~ell~~~---~~~~~~DVVIDfT------~p~-----------------  117 (163)
                       .++.|.     +                +.++..+++   .++.++||||...      ...                 
T Consensus        90 l~~V~V~~G~~ldg~~~~~~~~~~~~e~~s~~e~v~~vv~~lk~~~~DVvIn~~STE~~~p~gs~~~l~~ai~~~~~~~i  169 (394)
T 1vjp_A           90 TSDPEIRKGVHLGSVRNLPIEAEGLEDSMTLKEAVDTLVKEWTELDPDVIVNTCTTEAFVPFGNKEDLLKAIENNDKERL  169 (394)
T ss_dssp             SSCCBCEECCCTTTTTTSSCCBCCGGGSSCHHHHHHHHHHHHHHHCCSEEEECCCCCCCCCCSSHHHHHHHHHTTCTTTC
T ss_pred             cCCCEEEeccccCcccccchhhhccccccchhhHHHHHHHHHHHcCCCEEEEecCccCCCCCCCHHHHHHHHhcCCCCcc
Confidence             122111     0                112222111   1246899999875      111                 


Q ss_pred             -hHHHHHHHHHH-----cCCcEEEeCCCCCHHHHHHHHHHhhhcCeEEcCC
Q 031216          118 -TVYDNVKQATA-----FGMRSVVYVPHIQLETVSALSAFCDKASMVSTGS  162 (163)
Q Consensus       118 -~~~~~~~~al~-----~G~~vVigttg~~~e~~~~L~~~A~~~~Vv~tg~  162 (163)
                       ...-|+.+|++     .|++.|-++|.+... .+.+.+++++.++.+.|.
T Consensus       170 ~aS~~YA~AAl~~~~~~aG~~fVN~~P~~ia~-~P~~~ela~~~gvpi~GD  219 (394)
T 1vjp_A          170 TATQVYAYAAALYANKRGGAAFVNVIPTFIAN-DPAFVELAKENNLVVFGD  219 (394)
T ss_dssp             CHHHHHHHHHHHHHHHHTCEEEEECSSSCSTT-CHHHHHHHHHTTEEEECS
T ss_pred             ChHHHHHHHHHhhccccCCcceEecCCccccC-CHHHHHHHHHcCCCEEcc
Confidence             23457789999     999999999976432 366999999999998774

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=97.00  E-value=0.0018  Score=53.65  Aligned_cols=124  Identities=16%  Similarity=0.054  Sum_probs=68.0

Q ss_pred             cccccccceeeeccCCCCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCH
Q 031216           15 ISQNVKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDL   94 (163)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l   94 (163)
                      ..++++..+|- ......-...+|+|+| .|+||+.+++.+.. -++++. ++|+...  .. ...    ..++. +.++
T Consensus       123 ~~~~~~~g~w~-~~~~~~l~g~~vgIIG-~G~IG~~~A~~l~~-~G~~V~-~~d~~~~--~~-~~~----~~g~~-~~~l  190 (313)
T 2ekl_A          123 SMALAKSGIFK-KIEGLELAGKTIGIVG-FGRIGTKVGIIANA-MGMKVL-AYDILDI--RE-KAE----KINAK-AVSL  190 (313)
T ss_dssp             HHHHHHTTCCC-CCCCCCCTTCEEEEES-CSHHHHHHHHHHHH-TTCEEE-EECSSCC--HH-HHH----HTTCE-ECCH
T ss_pred             HHHHHHcCCCC-CCCCCCCCCCEEEEEe-eCHHHHHHHHHHHH-CCCEEE-EECCCcc--hh-HHH----hcCce-ecCH
Confidence            34455555552 1111223447899999 79999999999874 588887 4665431  11 111    23443 3489


Q ss_pred             HHHHhcccccCCccEEEEccCchh-H---H-HHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCe
Q 031216           95 TMVLGSISQSKARAVVIDFTDAST-V---Y-DNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASM  157 (163)
Q Consensus        95 ~ell~~~~~~~~~DVVIDfT~p~~-~---~-~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~V  157 (163)
                      ++++.      ..|+|+...+... .   . +.....++.|.-+|.-.+|- ..+.+.|.++.++..+
T Consensus       191 ~ell~------~aDvVvl~~P~~~~t~~li~~~~l~~mk~ga~lIn~arg~-~vd~~aL~~aL~~g~i  251 (313)
T 2ekl_A          191 EELLK------NSDVISLHVTVSKDAKPIIDYPQFELMKDNVIIVNTSRAV-AVNGKALLDYIKKGKV  251 (313)
T ss_dssp             HHHHH------HCSEEEECCCCCTTSCCSBCHHHHHHSCTTEEEEESSCGG-GBCHHHHHHHHHTTCE
T ss_pred             HHHHh------hCCEEEEeccCChHHHHhhCHHHHhcCCCCCEEEECCCCc-ccCHHHHHHHHHcCCC
Confidence            99885      8999996653211 1   1 23334455565444433331 2223445555554433

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=96.98  E-value=0.0012  Score=56.09  Aligned_cols=129  Identities=7%  Similarity=0.030  Sum_probs=69.8

Q ss_pred             cccccccccceeeecc---CCCCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcE-EEEEEecCCCCcchhhhccCCCCCCc
Q 031216           13 HHISQNVKAKRFISCS---TNPPQSNIKVIINGAVKEIGRAAVIAVTKARGME-VAGAIDSHSVGEDIGMVCDMEQPLEI   88 (163)
Q Consensus        13 ~~~~~~~~~~~~~~~~---~~~~~~~irV~VvGa~G~mG~~i~~~i~~~~~~e-Lvgvid~~~~g~~~~~l~g~~~~~gi   88 (163)
                      +...++++..+|-...   ....-...+|+|+| .|+||+.+++.+.. -+++ +. ++|+.....+...      ..++
T Consensus       139 ~~~~~~~~~g~W~~~~~~~~~~~l~g~tvgIIG-~G~IG~~vA~~l~~-~G~~~V~-~~d~~~~~~~~~~------~~g~  209 (364)
T 2j6i_A          139 VPAHEQIINHDWEVAAIAKDAYDIEGKTIATIG-AGRIGYRVLERLVP-FNPKELL-YYDYQALPKDAEE------KVGA  209 (364)
T ss_dssp             HHHHHHHHTTCCCHHHHHTTCCCSTTCEEEEEC-CSHHHHHHHHHHGG-GCCSEEE-EECSSCCCHHHHH------HTTE
T ss_pred             HHHHHHHHhCCCCcCcccCCcccCCCCEEEEEC-cCHHHHHHHHHHHh-CCCcEEE-EECCCccchhHHH------hcCc
Confidence            3334455666663211   11223457899999 79999999999874 5786 76 4665321111111      2344


Q ss_pred             ceeCCHHHHHhcccccCCccEEEEccCchh-H----HHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCe
Q 031216           89 PVMSDLTMVLGSISQSKARAVVIDFTDAST-V----YDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASM  157 (163)
Q Consensus        89 ~v~~~l~ell~~~~~~~~~DVVIDfT~p~~-~----~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~V  157 (163)
                      ..+.++++++.      ..|+|+...+... .    .+.....++.|.-+|.-..|- ..+.+.|.++.++..+
T Consensus       210 ~~~~~l~ell~------~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~arG~-~vd~~aL~~aL~~g~i  276 (364)
T 2j6i_A          210 RRVENIEELVA------QADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTARGA-ICVAEDVAAALESGQL  276 (364)
T ss_dssp             EECSSHHHHHH------TCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCGG-GBCHHHHHHHHHHTSE
T ss_pred             EecCCHHHHHh------cCCEEEECCCCChHHHHHhCHHHHhhCCCCCEEEECCCCc-hhCHHHHHHHHHcCCC
Confidence            44568999985      8999997664431 1    122333344554444322332 1222445555554443

>1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A*

Probab=96.98  E-value=0.0016  Score=51.74  Aligned_cols=82  Identities=13%  Similarity=0.136  Sum_probs=51.6

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEccC
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT~  115 (163)
                      |||.|+|++|.+|+.+++.+.  .+.+++++ ++...      ..    ..++.-.+++++++..    .++|+||.+..
T Consensus         1 m~ilVtGatG~iG~~l~~~L~--~g~~V~~~-~r~~~------~~----~~D~~d~~~~~~~~~~----~~~d~vih~a~   63 (299)
T 1n2s_A            1 MNILLFGKTGQVGWELQRSLA--PVGNLIAL-DVHSK------EF----CGDFSNPKGVAETVRK----LRPDVIVNAAA   63 (299)
T ss_dssp             CEEEEECTTSHHHHHHHHHTT--TTSEEEEE-CTTCS------SS----CCCTTCHHHHHHHHHH----HCCSEEEECCC
T ss_pred             CeEEEECCCCHHHHHHHHHhh--cCCeEEEe-ccccc------cc----cccCCCHHHHHHHHHh----cCCCEEEECcc
Confidence            489999999999999999987  48998875 43211      00    1112112345566652    35999998753


Q ss_pred             ch------------------hHHHHHHHHHHcCCcEE
Q 031216          116 AS------------------TVYDNVKQATAFGMRSV  134 (163)
Q Consensus       116 p~------------------~~~~~~~~al~~G~~vV  134 (163)
                      +.                  .....++.|.+.|+++|
T Consensus        64 ~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v  100 (299)
T 1n2s_A           64 HTAVDKAESEPELAQLLNATSVEAIAKAANETGAWVV  100 (299)
T ss_dssp             CCCHHHHTTCHHHHHHHHTHHHHHHHHHHTTTTCEEE
T ss_pred             cCCHhhhhcCHHHHHHHHHHHHHHHHHHHHHcCCcEE
Confidence            21                  12345566667777766

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=96.97  E-value=0.0064  Score=53.52  Aligned_cols=35  Identities=20%  Similarity=0.278  Sum_probs=28.9

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCc-EEEEEEecC
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSH   70 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~-eLvgvid~~   70 (163)
                      .++||+|+| +|.||..++..+.+.+|. ++++ +|++
T Consensus        17 ~~mkIaVIG-lG~mG~~lA~~la~~~G~~~V~~-~D~~   52 (478)
T 3g79_A           17 PIKKIGVLG-MGYVGIPAAVLFADAPCFEKVLG-FQRN   52 (478)
T ss_dssp             SCCEEEEEC-CSTTHHHHHHHHHHSTTCCEEEE-ECCC
T ss_pred             CCCEEEEEC-cCHHHHHHHHHHHHhCCCCeEEE-EECC
Confidence            468999999 699999999999876688 8875 6743

>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A

Probab=96.97  E-value=0.0024  Score=51.69  Aligned_cols=38  Identities=13%  Similarity=0.211  Sum_probs=29.4

Q ss_pred             CCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216           31 PPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (163)
Q Consensus        31 ~~~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~   69 (163)
                      ++.++.||.|+|++|.+|+.+++.+.+ .+.++++..++
T Consensus         5 ~~~~~~~vlVTGatGfIG~~l~~~Ll~-~G~~V~~~~r~   42 (338)
T 2rh8_A            5 HPIGKKTACVVGGTGFVASLLVKLLLQ-KGYAVNTTVRD   42 (338)
T ss_dssp             ----CCEEEEECTTSHHHHHHHHHHHH-TTCEEEEEESC
T ss_pred             cCCCCCEEEEECCchHHHHHHHHHHHH-CCCEEEEEEcC
Confidence            334467899999999999999999885 68999876653

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=96.97  E-value=0.0025  Score=55.32  Aligned_cols=70  Identities=11%  Similarity=0.123  Sum_probs=45.4

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcC-CcEEEEEEecCCCCcchhh---------------hccCCCCCCcceeCCHHHHH
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAIDSHSVGEDIGM---------------VCDMEQPLEIPVMSDLTMVL   98 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~-~~eLvgvid~~~~g~~~~~---------------l~g~~~~~gi~v~~~l~ell   98 (163)
                      |+||+|+| +|+||..++..+.+.. +.++++ +|++.  ..+..               +.......++..++|+++++
T Consensus         5 ~mkI~VIG-~G~mG~~lA~~La~~g~G~~V~~-~d~~~--~~~~~l~~g~~~i~e~~l~~~~~~~~~~~~~~t~~~~e~~   80 (467)
T 2q3e_A            5 IKKICCIG-AGYVGGPTCSVIAHMCPEIRVTV-VDVNE--SRINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDAI   80 (467)
T ss_dssp             CCEEEEEC-CSTTHHHHHHHHHHHCTTSEEEE-ECSCH--HHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHH
T ss_pred             ccEEEEEC-CCHHHHHHHHHHHhcCCCCEEEE-EECCH--HHHHHHhCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHH
Confidence            57999999 6999999999988653 788764 57431  11111               11000012456678888877


Q ss_pred             hcccccCCccEEEEcc
Q 031216           99 GSISQSKARAVVIDFT  114 (163)
Q Consensus        99 ~~~~~~~~~DVVIDfT  114 (163)
                      .      .+|+||.+.
T Consensus        81 ~------~aDvViiaV   90 (467)
T 2q3e_A           81 K------EADLVFISV   90 (467)
T ss_dssp             H------HCSEEEECC
T ss_pred             h------cCCEEEEEc
Confidence            5      799999664

>3cin_A MYO-inositol-1-phosphate synthase-related protein; structura genomics, joint center for structural genomics, JCSG; HET: NAD; 1.70A {Thermotoga maritima MSB8}

Probab=96.96  E-value=0.0062  Score=52.56  Aligned_cols=128  Identities=15%  Similarity=0.189  Sum_probs=76.9

Q ss_pred             CCCeeEEEEcCCCHHHHHHHHHHHh--------------------cCCcEEEEEEec--CCCCcchhhhccC--------
Q 031216           33 QSNIKVIINGAVKEIGRAAVIAVTK--------------------ARGMEVAGAIDS--HSVGEDIGMVCDM--------   82 (163)
Q Consensus        33 ~~~irV~VvGa~G~mG~~i~~~i~~--------------------~~~~eLvgvid~--~~~g~~~~~l~g~--------   82 (163)
                      -.|+||+|+| .|..+..++.-+..                    .++.+++|+.|.  ...|+++.+..-.        
T Consensus        11 ~~mIrVaIvG-vGnvASTlvqGv~~~r~g~~~~~G~p~~~~~p~~~~Di~vvgg~DId~~kvgk~l~eAi~~~~n~~~~~   89 (394)
T 3cin_A           11 HHMVKVLILG-QGYVASTFVAGLEKLRKGEIEPYGVPLARELPIGFEDIKIVGSYDVDRAKIGKKLSEVVKQYWNDVDSL   89 (394)
T ss_dssp             -CCEEEEEEC-CSHHHHHHHHHHHHHHTTSSCCTTCTTTTCSSSCGGGEEEEEEEECBTTTTTSBHHHHHHHHCTTCCCC
T ss_pred             cceeEEEEec-CCHHHHHHHHHHHHHHcCCCCCccccccccCCCCCCCcEEEEEecCCcchhHHHHHHHHhhchhccccc
Confidence            4689999999 59999999887651                    236789999993  3456664433210        


Q ss_pred             CC--C-----------------CCcceeCCHHHHHhcc---cccCCccEEEEccC-----ch------------------
Q 031216           83 EQ--P-----------------LEIPVMSDLTMVLGSI---SQSKARAVVIDFTD-----AS------------------  117 (163)
Q Consensus        83 ~~--~-----------------~gi~v~~~l~ell~~~---~~~~~~DVVIDfT~-----p~------------------  117 (163)
                      ..  .                 .+..-..++.+.++.+   .++.+.||||...+     |.                  
T Consensus        90 ~~~p~~~~~v~~~~~~~~~~~~~~~~~~~~~~e~i~~~~k~~~~~~~~Vvvn~asTE~ylpvgs~~~~~~a~~~~~~~~i  169 (394)
T 3cin_A           90 TSDPEIRKGVHLGSVRNLPIEAEGLEDSMTLKEAVDTLVKEWTELDPDVIVNTCTTEAFVPFGNKEDLLKAIENNDKERL  169 (394)
T ss_dssp             SSCCBCEECCCTTTTTTSSCCBCCGGGSSCHHHHHHHHHHHHHHHCCSEEEECCCCCCCCCCSSHHHHHHHHHTTCTTTC
T ss_pred             cCccccccCcccccccCcCccccchhhhhhHHHhHHHHHHHhhhccceeEeeecccccCCCCCCHHHHHHHhhccccccC
Confidence            00  0                 0000001111211111   02347789997431     11                  


Q ss_pred             -hHHHHHHHHH-----HcCCcEEEeCCCCCHHHHHHHHHHhhhcCeEEcCC
Q 031216          118 -TVYDNVKQAT-----AFGMRSVVYVPHIQLETVSALSAFCDKASMVSTGS  162 (163)
Q Consensus       118 -~~~~~~~~al-----~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv~tg~  162 (163)
                       ...-|+.+|+     +.|++.|-++|.+... .+.+.+++++.++...|.
T Consensus       170 ~as~~YA~AAl~~aa~~aG~~fvN~~P~~ia~-~P~~~ela~~~gvpi~Gd  219 (394)
T 3cin_A          170 TATQVYAYAAALYANKRGGAAFVNVIPTFIAN-DPAFVELAKENNLVVFGD  219 (394)
T ss_dssp             CHHHHHHHHHHHHHHHHTCEEEEECSSSCSTT-CHHHHHHHHHTTEEEECS
T ss_pred             ChhHHHHHHHHHhhhhhcCCceecCCCccccC-cHHHHHHHHHcCCcEecc
Confidence             1223455555     8999999999977643 367999999999998874

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=96.95  E-value=0.0015  Score=53.18  Aligned_cols=94  Identities=16%  Similarity=0.121  Sum_probs=53.7

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec--CCCCcchhhhccCC--CC-----CCcceeC--CHHHHHhccccc
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS--HSVGEDIGMVCDME--QP-----LEIPVMS--DLTMVLGSISQS  104 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~--~~~g~~~~~l~g~~--~~-----~gi~v~~--~l~ell~~~~~~  104 (163)
                      +||+|+| .|.||..++..+.+ .+.++.. +|+  +.  .....+....  ..     ..+.+++  ++++++.     
T Consensus         1 m~I~iiG-~G~mG~~~a~~L~~-~g~~V~~-~~r~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-----   70 (335)
T 1txg_A            1 MIVSILG-AGAMGSALSVPLVD-NGNEVRI-WGTEFDT--EILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLE-----   70 (335)
T ss_dssp             CEEEEES-CCHHHHHHHHHHHH-HCCEEEE-ECCGGGH--HHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHT-----
T ss_pred             CEEEEEC-cCHHHHHHHHHHHh-CCCeEEE-EEccCCH--HHHHHHHHhCcCcccCccccceEEecHHhHHHHHh-----
Confidence            4899999 59999999999875 4667664 554  21  1111211100  00     1124455  7777664     


Q ss_pred             CCccEEEEccCchhHHHHHHHH--HHcCCcEEEeCCCC
Q 031216          105 KARAVVIDFTDASTVYDNVKQA--TAFGMRSVVYVPHI  140 (163)
Q Consensus       105 ~~~DVVIDfT~p~~~~~~~~~a--l~~G~~vVigttg~  140 (163)
                       ++|+||.++.+....+.+...  +..+..+|.-+.|+
T Consensus        71 -~~D~vi~~v~~~~~~~v~~~i~~l~~~~~vv~~~ng~  107 (335)
T 1txg_A           71 -NAEVVLLGVSTDGVLPVMSRILPYLKDQYIVLISKGL  107 (335)
T ss_dssp             -TCSEEEECSCGGGHHHHHHHHTTTCCSCEEEECCCSE
T ss_pred             -cCCEEEEcCChHHHHHHHHHHhcCCCCCEEEEEcCcC
Confidence             899999666665554444332  33455555433366

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=96.93  E-value=0.0016  Score=54.47  Aligned_cols=86  Identities=17%  Similarity=0.143  Sum_probs=53.9

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEc
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDf  113 (163)
                      ...+|+|+| .|+||+.+++.+. .-++++. ++|+... .+...      ..++. +.++++++.      .+|+|+..
T Consensus       145 ~g~~vgIIG-~G~iG~~vA~~l~-~~G~~V~-~~d~~~~-~~~~~------~~g~~-~~~l~e~l~------~aDiVil~  207 (333)
T 2d0i_A          145 YGKKVGILG-MGAIGKAIARRLI-PFGVKLY-YWSRHRK-VNVEK------ELKAR-YMDIDELLE------KSDIVILA  207 (333)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHG-GGTCEEE-EECSSCC-HHHHH------HHTEE-ECCHHHHHH------HCSEEEEC
T ss_pred             CcCEEEEEc-cCHHHHHHHHHHH-HCCCEEE-EECCCcc-hhhhh------hcCce-ecCHHHHHh------hCCEEEEc
Confidence            347899999 6999999999987 4578876 4665432 11111      12333 348988885      89999976


Q ss_pred             cCch-hH----HHHHHHHHHcCCcEEEeCC
Q 031216          114 TDAS-TV----YDNVKQATAFGMRSVVYVP  138 (163)
Q Consensus       114 T~p~-~~----~~~~~~al~~G~~vVigtt  138 (163)
                      ..+. ..    .+.....++.|  +++-+.
T Consensus       208 vp~~~~t~~~i~~~~~~~mk~g--ilin~s  235 (333)
T 2d0i_A          208 LPLTRDTYHIINEERVKKLEGK--YLVNIG  235 (333)
T ss_dssp             CCCCTTTTTSBCHHHHHHTBTC--EEEECS
T ss_pred             CCCChHHHHHhCHHHHhhCCCC--EEEECC
Confidence            6443 11    22334456667  555443

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=96.92  E-value=0.0037  Score=52.74  Aligned_cols=67  Identities=19%  Similarity=0.167  Sum_probs=46.6

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEc
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDf  113 (163)
                      ...+|+|+| .|+||+.+++.+. .-|+++.+ +|+... .....      ..++..+.++++++.      ..|+|+..
T Consensus       167 ~g~tvGIIG-~G~IG~~vA~~l~-~~G~~V~~-~d~~~~-~~~~~------~~g~~~~~~l~ell~------~aDvV~l~  230 (347)
T 1mx3_A          167 RGETLGIIG-LGRVGQAVALRAK-AFGFNVLF-YDPYLS-DGVER------ALGLQRVSTLQDLLF------HSDCVTLH  230 (347)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHH-TTTCEEEE-ECTTSC-TTHHH------HHTCEECSSHHHHHH------HCSEEEEC
T ss_pred             CCCEEEEEe-ECHHHHHHHHHHH-HCCCEEEE-ECCCcc-hhhHh------hcCCeecCCHHHHHh------cCCEEEEc
Confidence            347899999 7999999999987 46899774 675321 11111      224444568999886      79999976


Q ss_pred             cCc
Q 031216          114 TDA  116 (163)
Q Consensus       114 T~p  116 (163)
                      .+.
T Consensus       231 ~P~  233 (347)
T 1mx3_A          231 CGL  233 (347)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            543

>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0

Probab=96.91  E-value=0.0038  Score=49.98  Aligned_cols=70  Identities=14%  Similarity=0.197  Sum_probs=40.5

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcc-hhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEc
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGED-IGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~-~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDf  113 (163)
                      |+||.|+|++|.+|+.+++.+.+. + .++.+.++.....+ ....... ...++.- +++++++.      .+|+||.+
T Consensus         1 M~~vlVTGatG~iG~~l~~~L~~~-g-~~v~~~~~~~~~~~~~~~~~~~-~~~Dl~~-~~~~~~~~------~~d~vih~   70 (313)
T 3ehe_A            1 MSLIVVTGGAGFIGSHVVDKLSES-N-EIVVIDNLSSGNEEFVNEAARL-VKADLAA-DDIKDYLK------GAEEVWHI   70 (313)
T ss_dssp             --CEEEETTTSHHHHHHHHHHTTT-S-CEEEECCCSSCCGGGSCTTEEE-ECCCTTT-SCCHHHHT------TCSEEEEC
T ss_pred             CCEEEEECCCchHHHHHHHHHHhC-C-CEEEEEcCCCCChhhcCCCcEE-EECcCCh-HHHHHHhc------CCCEEEEC
Confidence            578999999999999999999854 5 66655443221100 0000000 0112222 45667764      89999986


Q ss_pred             c
Q 031216          114 T  114 (163)
Q Consensus       114 T  114 (163)
                      .
T Consensus        71 a   71 (313)
T 3ehe_A           71 A   71 (313)
T ss_dssp             C
T ss_pred             C
Confidence            5

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=96.91  E-value=0.0078  Score=51.66  Aligned_cols=68  Identities=21%  Similarity=0.322  Sum_probs=43.9

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccC----CCC-----------CC-cceeCCHHHHHh
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDM----EQP-----------LE-IPVMSDLTMVLG   99 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~----~~~-----------~g-i~v~~~l~ell~   99 (163)
                      +||+|+| +|+||..++..+.+ .+.++++ +|+..  ..+..+...    ..+           .+ +..++++++++.
T Consensus         1 mkI~VIG-~G~vG~~~A~~la~-~G~~V~~-~d~~~--~~~~~l~~~~~~i~e~~l~~~~~~~~~~g~l~~t~~~~~~~~   75 (436)
T 1mv8_A            1 MRISIFG-LGYVGAVCAGCLSA-RGHEVIG-VDVSS--TKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVL   75 (436)
T ss_dssp             CEEEEEC-CSTTHHHHHHHHHH-TTCEEEE-ECSCH--HHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHH
T ss_pred             CEEEEEC-CCHHHHHHHHHHHH-CCCEEEE-EECCH--HHHHHHhCCCCCcCCCCHHHHHHhhcccCceEEeCCHHHHhc
Confidence            4899999 69999999999874 5788764 56431  111111100    000           12 556788888775


Q ss_pred             cccccCCccEEEEcc
Q 031216          100 SISQSKARAVVIDFT  114 (163)
Q Consensus       100 ~~~~~~~~DVVIDfT  114 (163)
                            ++|+||.+.
T Consensus        76 ------~aDvviiaV   84 (436)
T 1mv8_A           76 ------DSDVSFICV   84 (436)
T ss_dssp             ------TCSEEEECC
T ss_pred             ------cCCEEEEEc
Confidence                  899999665

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=96.89  E-value=0.0016  Score=53.70  Aligned_cols=102  Identities=15%  Similarity=0.036  Sum_probs=61.0

Q ss_pred             cccccccccceeeeccCCCCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeC
Q 031216           13 HHISQNVKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS   92 (163)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~   92 (163)
                      ....++++..+|-.. ....-.-.+|+|+| .|+||+.+++.+.. -|+++.+ +|+....           ...+...+
T Consensus       101 ~~~~~~~~~g~w~~~-~~~~l~g~tvGIIG-lG~IG~~vA~~l~~-~G~~V~~-~dr~~~~-----------~~~~~~~~  165 (290)
T 3gvx_A          101 LENNELMKAGIFRQS-PTTLLYGKALGILG-YGGIGRRVAHLAKA-FGMRVIA-YTRSSVD-----------QNVDVISE  165 (290)
T ss_dssp             HHHHHHHHTTCCCCC-CCCCCTTCEEEEEC-CSHHHHHHHHHHHH-HTCEEEE-ECSSCCC-----------TTCSEECS
T ss_pred             hhhhhHhhhcccccC-Cceeeecchheeec-cCchhHHHHHHHHh-hCcEEEE-Eeccccc-----------cccccccC
Confidence            334455566665322 22233457999999 79999999999874 5899885 5643211           01123346


Q ss_pred             CHHHHHhcccccCCccEEEEccCc-hhHH----HHHHHHHHcCCcEEE
Q 031216           93 DLTMVLGSISQSKARAVVIDFTDA-STVY----DNVKQATAFGMRSVV  135 (163)
Q Consensus        93 ~l~ell~~~~~~~~~DVVIDfT~p-~~~~----~~~~~al~~G~~vVi  135 (163)
                      ++++++.      ..|+|+...+. +...    +.....++.|.-+|-
T Consensus       166 ~l~ell~------~aDiV~l~~P~t~~t~~li~~~~l~~mk~gailIN  207 (290)
T 3gvx_A          166 SPADLFR------QSDFVLIAIPLTDKTRGMVNSRLLANARKNLTIVN  207 (290)
T ss_dssp             SHHHHHH------HCSEEEECCCCCTTTTTCBSHHHHTTCCTTCEEEE
T ss_pred             ChHHHhh------ccCeEEEEeeccccchhhhhHHHHhhhhcCceEEE
Confidence            9999986      89999855532 1111    233344555655554

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=96.88  E-value=0.00026  Score=56.70  Aligned_cols=104  Identities=12%  Similarity=0.086  Sum_probs=59.7

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEccCc
Q 031216           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDA  116 (163)
Q Consensus        37 rV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT~p  116 (163)
                      ||+|+| +|+||+.+++.+.+. ++++ .+++++.  .+..++..   ..+.. +++++++ .      ++|+||.+|.+
T Consensus       118 ~v~iiG-~G~~g~~~a~~l~~~-g~~v-~v~~r~~--~~~~~l~~---~~~~~-~~~~~~~-~------~~Divi~~tp~  181 (263)
T 2d5c_A          118 PALVLG-AGGAGRAVAFALREA-GLEV-WVWNRTP--QRALALAE---EFGLR-AVPLEKA-R------EARLLVNATRV  181 (263)
T ss_dssp             CEEEEC-CSHHHHHHHHHHHHT-TCCE-EEECSSH--HHHHHHHH---HHTCE-ECCGGGG-G------GCSEEEECSST
T ss_pred             eEEEEC-CcHHHHHHHHHHHHC-CCEE-EEEECCH--HHHHHHHH---Hhccc-hhhHhhc-c------CCCEEEEccCC
Confidence            899999 599999999998864 5654 4677542  12222221   11222 5677666 4      78999977755


Q ss_pred             hhHH---HHH-HHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeEE
Q 031216          117 STVY---DNV-KQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVS  159 (163)
Q Consensus       117 ~~~~---~~~-~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv~  159 (163)
                      ..+.   +.+ ...++.|..++ -. ++++.+. +|.+.+++.++.+
T Consensus       182 ~~~~~~~~~l~~~~l~~g~~vi-D~-~~~p~~t-~l~~~a~~~g~~~  225 (263)
T 2d5c_A          182 GLEDPSASPLPAELFPEEGAAV-DL-VYRPLWT-RFLREAKAKGLKV  225 (263)
T ss_dssp             TTTCTTCCSSCGGGSCSSSEEE-ES-CCSSSSC-HHHHHHHHTTCEE
T ss_pred             CCCCCCCCCCCHHHcCCCCEEE-Ee-ecCCccc-HHHHHHHHCcCEE
Confidence            4321   111 23455666554 22 2222222 3666677766543

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=96.87  E-value=0.0035  Score=52.99  Aligned_cols=85  Identities=14%  Similarity=0.142  Sum_probs=53.4

Q ss_pred             cccccccccceeeeccC--C--CCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCc
Q 031216           13 HHISQNVKAKRFISCST--N--PPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI   88 (163)
Q Consensus        13 ~~~~~~~~~~~~~~~~~--~--~~~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi   88 (163)
                      +...++++..+|-....  .  ..-.-.+|||+| .|+||+.+++.+. .-|+++.+ +|+...  +....     . ++
T Consensus       147 ~~~~~~~r~g~W~~~~~~~~~g~~l~gktvGIIG-lG~IG~~vA~~l~-~~G~~V~~-~dr~~~--~~~~~-----~-g~  215 (345)
T 4g2n_A          147 YEADRMVRSGSWPGWGPTQLLGMGLTGRRLGIFG-MGRIGRAIATRAR-GFGLAIHY-HNRTRL--SHALE-----E-GA  215 (345)
T ss_dssp             HHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEES-CSHHHHHHHHHHH-TTTCEEEE-ECSSCC--CHHHH-----T-TC
T ss_pred             HHHHHHHHcCCCcccCcccccccccCCCEEEEEE-eChhHHHHHHHHH-HCCCEEEE-ECCCCc--chhhh-----c-CC
Confidence            33445556666532111  1  112346899999 7999999999987 45899875 665321  11111     1 33


Q ss_pred             ceeCCHHHHHhcccccCCccEEEEcc
Q 031216           89 PVMSDLTMVLGSISQSKARAVVIDFT  114 (163)
Q Consensus        89 ~v~~~l~ell~~~~~~~~~DVVIDfT  114 (163)
                      ...+++++++.      ..|+|+...
T Consensus       216 ~~~~~l~ell~------~sDvV~l~~  235 (345)
T 4g2n_A          216 IYHDTLDSLLG------ASDIFLIAA  235 (345)
T ss_dssp             EECSSHHHHHH------TCSEEEECS
T ss_pred             eEeCCHHHHHh------hCCEEEEec
Confidence            44479999996      899998655

>1q0q_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; oxidoreductase; HET: DXP NDP; 1.90A {Escherichia coli} SCOP: a.69.3.1 c.2.1.3 d.81.1.3 PDB: 1q0l_A* 1q0h_A* 3r0i_A* 1k5h_A 1onn_A 1ono_A 1onp_A* 1jvs_A* 1t1r_A* 1t1s_A* 2egh_A* 3anm_A* 3anl_A* 3ann_A* 3iie_A

Probab=96.87  E-value=0.0047  Score=53.39  Aligned_cols=105  Identities=12%  Similarity=0.057  Sum_probs=64.0

Q ss_pred             CCCCCeeEEEEcCCCHHHHHHHHHHHhcCC-cEEEEEEecCCCC---cchhhh----------------cc-C--CCCCC
Q 031216           31 PPQSNIKVIINGAVKEIGRAAVIAVTKARG-MEVAGAIDSHSVG---EDIGMV----------------CD-M--EQPLE   87 (163)
Q Consensus        31 ~~~~~irV~VvGa~G~mG~~i~~~i~~~~~-~eLvgvid~~~~g---~~~~~l----------------~g-~--~~~~g   87 (163)
                      |-++|.||.|.|+||-+|+..+..+.++|+ ++++++...+...   +.+.++                -. +  . ..+
T Consensus         5 ~~~~~k~i~ILGSTGSIGtqtLdVi~~~pd~f~V~aL~ag~nv~~L~~q~~~f~p~~v~v~d~~~~~~L~~~l~~~-~~~   83 (406)
T 1q0q_A            5 HHSGMKQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVAGKNVTRMVEQCLEFSPRYAVMDDEASAKLLKTMLQQQ-GSR   83 (406)
T ss_dssp             ----CEEEEEETTTSHHHHHHHHHHHHCTTTEEEEEEEESSCHHHHHHHHHHHCCSEEEESSHHHHHHHHHHHHHT-TCC
T ss_pred             ccCCceeEEEEccCcHHHHHHHHHHHhCCCccEEEEEEcCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHHhhcC-CCC
Confidence            456889999999999999999999999987 9999998842110   000010                00 0  0 112


Q ss_pred             cceeCCHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeC
Q 031216           88 IPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV  137 (163)
Q Consensus        88 i~v~~~l~ell~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigt  137 (163)
                      +.++...+.+. ++....++|+|+..-.=.....-...|+++|+.+-...
T Consensus        84 ~~v~~G~~~l~-~~a~~~~~D~Vv~AIvG~aGL~PTlaAi~aGK~iaLAN  132 (406)
T 1q0q_A           84 TEVLSGQQAAC-DMAALEDVDQVMAAIVGAAGLLPTLAAIRAGKTILLAN  132 (406)
T ss_dssp             CEEEESHHHHH-HHHTCTTCCEEEECCSSGGGHHHHHHHHHTTCEEEECC
T ss_pred             cEEEeCHHHHH-HHhcCCCCCEEEEccccHhHHHHHHHHHHCCCeEEEec
Confidence            33443333222 12223568999855544455677788999999998744

>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*

Probab=96.85  E-value=0.0039  Score=49.90  Aligned_cols=61  Identities=15%  Similarity=0.025  Sum_probs=41.2

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT  114 (163)
                      ++||.|+|++|.+|+.+++.+.+ .+.+++++ ++...    .++         .-.+++++++..    .++|+||.+.
T Consensus         3 ~~~ilVtGatG~iG~~l~~~L~~-~g~~v~~~-~r~~~----~D~---------~d~~~~~~~~~~----~~~d~vih~a   63 (321)
T 1e6u_A            3 KQRVFIAGHRGMVGSAIRRQLEQ-RGDVELVL-RTRDE----LNL---------LDSRAVHDFFAS----ERIDQVYLAA   63 (321)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTT-CTTEEEEC-CCTTT----CCT---------TCHHHHHHHHHH----HCCSEEEECC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHh-CCCeEEEE-ecCcc----CCc---------cCHHHHHHHHHh----cCCCEEEEcC
Confidence            36899999999999999999875 57887764 33211    111         111345566642    3799999875

>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A

Probab=96.84  E-value=0.0024  Score=55.81  Aligned_cols=113  Identities=16%  Similarity=0.108  Sum_probs=72.7

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhhccCCCCCC-c-----ceeCCHHHHHhccc
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMVCDMEQPLE-I-----PVMSDLTMVLGSIS  102 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~-----~~g~~~~~l~g~~~~~g-i-----~v~~~l~ell~~~~  102 (163)
                      +..||+|.| .|++|+..++.+.+ .+.+++++.|+.     ..|.|..++.......+ +     ..+-+.++++.   
T Consensus       234 ~g~~vaVqG-fGnVG~~~a~~L~e-~GakvVavsD~~G~i~dp~Gld~~~l~~~~~~~g~i~~y~~a~~i~~~ei~~---  308 (440)
T 3aog_A          234 EGARVAIQG-FGNVGNAAARAFHD-HGARVVAVQDHTGTVYNEAGIDPYDLLRHVQEFGGVRGYPKAEPLPAADFWG---  308 (440)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHH-TTCEEEEEECSSCEEECTTCCCHHHHHHHHHHTSSSTTCTTSEECCHHHHTT---
T ss_pred             cCCEEEEec-cCHHHHHHHHHHHH-CCCEEEEEEcCCcEEECCCCCCHHHHHHHHHhcCCcccCCCceEcCchhhhc---
Confidence            347999999 79999999998874 699999999963     44555444432110000 0     12235677775   


Q ss_pred             ccCCccEEEEccCchhH-HHHHHHHHHcCCcEEEeCC--CCCHHHHHHHHHHhhhcCeEEc
Q 031216          103 QSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMVST  160 (163)
Q Consensus       103 ~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigtt--g~~~e~~~~L~~~A~~~~Vv~t  160 (163)
                        .++|+++.++.++.. .+++.   +-+..+|++-.  .++++..+.|    ++.+|++.
T Consensus       309 --~~~DIlvPcA~~n~i~~~na~---~l~ak~VvEgAN~p~t~eA~~iL----~~~GI~~~  360 (440)
T 3aog_A          309 --LPVEFLVPAALEKQITEQNAW---RIRARIVAEGANGPTTPAADDIL----LEKGVLVV  360 (440)
T ss_dssp             --CCCSEEEECSSSSCBCTTTGG---GCCCSEEECCSSSCBCHHHHHHH----HHHTCEEE
T ss_pred             --CCCcEEEecCCcCccchhhHH---HcCCcEEEecCccccCHHHHHHH----HHCCCEEE
Confidence              599999998866544 33443   23888888766  4566554444    35577764

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=96.83  E-value=0.0055  Score=49.44  Aligned_cols=33  Identities=18%  Similarity=0.328  Sum_probs=27.9

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid   68 (163)
                      +++|.|+|++|.+|+.+++.+.+ .+.+++++..
T Consensus         5 ~~~vlVTGatG~iG~~l~~~L~~-~G~~V~~~~r   37 (341)
T 3enk_A            5 KGTILVTGGAGYIGSHTAVELLA-HGYDVVIADN   37 (341)
T ss_dssp             SCEEEEETTTSHHHHHHHHHHHH-TTCEEEEECC
T ss_pred             CcEEEEecCCcHHHHHHHHHHHH-CCCcEEEEec
Confidence            46899999999999999999985 5889886543

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=96.82  E-value=0.0027  Score=50.29  Aligned_cols=33  Identities=30%  Similarity=0.430  Sum_probs=27.7

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~   69 (163)
                      |+||.|+| +|.+|+.+++.+.+ .+.+++++..+
T Consensus         3 ~~~ilVtG-aG~iG~~l~~~L~~-~g~~V~~~~r~   35 (286)
T 3gpi_A            3 LSKILIAG-CGDLGLELARRLTA-QGHEVTGLRRS   35 (286)
T ss_dssp             CCCEEEEC-CSHHHHHHHHHHHH-TTCCEEEEECT
T ss_pred             CCcEEEEC-CCHHHHHHHHHHHH-CCCEEEEEeCC
Confidence            57899999 59999999999985 57898877654

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=96.82  E-value=0.0025  Score=53.94  Aligned_cols=87  Identities=14%  Similarity=0.080  Sum_probs=54.2

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEc
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDf  113 (163)
                      .-.+|+|+| .|+||+.+++.+. .-|+++. ++|+...  +.....    ..++..++++++++.      ..|+|+..
T Consensus       163 ~gktvGIIG-~G~IG~~vA~~l~-~~G~~V~-~~dr~~~--~~~~~~----~~g~~~~~~l~ell~------~aDvV~l~  227 (351)
T 3jtm_A          163 EGKTIGTVG-AGRIGKLLLQRLK-PFGCNLL-YHDRLQM--APELEK----ETGAKFVEDLNEMLP------KCDVIVIN  227 (351)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHG-GGCCEEE-EECSSCC--CHHHHH----HHCCEECSCHHHHGG------GCSEEEEC
T ss_pred             cCCEEeEEE-eCHHHHHHHHHHH-HCCCEEE-EeCCCcc--CHHHHH----hCCCeEcCCHHHHHh------cCCEEEEC
Confidence            347899999 7999999999987 4589966 4665321  111111    224444579999985      89999955


Q ss_pred             cC--chh---HHHHHHHHHHcCCcEEE
Q 031216          114 TD--AST---VYDNVKQATAFGMRSVV  135 (163)
Q Consensus       114 T~--p~~---~~~~~~~al~~G~~vVi  135 (163)
                      .+  |+.   ..+.....++.|.-+|-
T Consensus       228 ~Plt~~t~~li~~~~l~~mk~gailIN  254 (351)
T 3jtm_A          228 MPLTEKTRGMFNKELIGKLKKGVLIVN  254 (351)
T ss_dssp             SCCCTTTTTCBSHHHHHHSCTTEEEEE
T ss_pred             CCCCHHHHHhhcHHHHhcCCCCCEEEE
Confidence            43  222   12333444555654443

>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis}

Probab=96.82  E-value=0.0056  Score=49.17  Aligned_cols=33  Identities=24%  Similarity=0.310  Sum_probs=27.7

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid   68 (163)
                      |+||.|+|++|.+|+.+++.+.+ .+.+++++..
T Consensus         1 M~~ilVtGatG~iG~~l~~~L~~-~g~~V~~~~r   33 (330)
T 2c20_A            1 MNSILICGGAGYIGSHAVKKLVD-EGLSVVVVDN   33 (330)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHH-TTCEEEEEEC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHh-CCCEEEEEeC
Confidence            57999999999999999999985 5788887543

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=96.80  E-value=0.011  Score=43.05  Aligned_cols=104  Identities=13%  Similarity=0.170  Sum_probs=55.4

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcc-eeC---CHHHHHhcccccCCccEEE
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP-VMS---DLTMVLGSISQSKARAVVI  111 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~-v~~---~l~ell~~~~~~~~~DVVI  111 (163)
                      .+|+|+| .|.+|+.+++.+.. .+.+++. +|+..  .....+.   ...+.. +..   +.+.+...  .-..+|+||
T Consensus        20 ~~v~IiG-~G~iG~~la~~L~~-~g~~V~v-id~~~--~~~~~~~---~~~g~~~~~~d~~~~~~l~~~--~~~~ad~Vi   89 (155)
T 2g1u_A           20 KYIVIFG-CGRLGSLIANLASS-SGHSVVV-VDKNE--YAFHRLN---SEFSGFTVVGDAAEFETLKEC--GMEKADMVF   89 (155)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHH-TTCEEEE-EESCG--GGGGGSC---TTCCSEEEESCTTSHHHHHTT--TGGGCSEEE
T ss_pred             CcEEEEC-CCHHHHHHHHHHHh-CCCeEEE-EECCH--HHHHHHH---hcCCCcEEEecCCCHHHHHHc--CcccCCEEE
Confidence            5799999 59999999999875 5778774 56432  1111211   012322 222   22322210  013789999


Q ss_pred             EccCchhHHHHH-HHHHH-cCCcEEEeCCCCCHHHHHHHHH
Q 031216          112 DFTDASTVYDNV-KQATA-FGMRSVVYVPHIQLETVSALSA  150 (163)
Q Consensus       112 DfT~p~~~~~~~-~~al~-~G~~vVigttg~~~e~~~~L~~  150 (163)
                      .++.+......+ ..+.. .+...++... .+.+..+.|.+
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~iv~~~-~~~~~~~~l~~  129 (155)
T 2g1u_A           90 AFTNDDSTNFFISMNARYMFNVENVIARV-YDPEKIKIFEE  129 (155)
T ss_dssp             ECSSCHHHHHHHHHHHHHTSCCSEEEEEC-SSGGGHHHHHT
T ss_pred             EEeCCcHHHHHHHHHHHHHCCCCeEEEEE-CCHHHHHHHHH
Confidence            877655554444 33444 5655555444 22333344544

>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli}

Probab=96.80  E-value=0.0043  Score=54.75  Aligned_cols=74  Identities=8%  Similarity=0.083  Sum_probs=61.0

Q ss_pred             CCCcceeCCHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeEEcC
Q 031216           85 PLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVSTG  161 (163)
Q Consensus        85 ~~gi~v~~~l~ell~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv~tg  161 (163)
                      ..++|+|.++.++.+.   ...+|+.|.+.++..+.+.++.|.++|+++|+=+.|+..++..+|.++|++.++..-|
T Consensus        18 ~~~~Pv~~~~~~~~~~---p~~~DlavI~vPa~~v~~~v~e~~~~Gv~~viis~Gf~~~~~~~l~~~A~~~g~rliG   91 (480)
T 3dmy_A           18 SQALTQVRRWDSACQK---LPDANLALISVAGEYAAELANQALDRNLNVMMFSDNVTLEDEIQLKTRAREKGLLVMG   91 (480)
T ss_dssp             --CCEEESSHHHHHHH---STTCCEEEECSCHHHHHHHHHHHHHTTCEEEECCCCCCHHHHHHHHHHHHHTTCCEEC
T ss_pred             CCCCcccchHHHHHhc---CCCCCEEEEecCHHHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEe
Confidence            3478999998887653   1379999989989999999999999999988877799988888999999998876544

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=96.79  E-value=0.0024  Score=53.06  Aligned_cols=87  Identities=11%  Similarity=0.114  Sum_probs=53.9

Q ss_pred             cccccccccceeeecc----CCCCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec-CCCCcchhhhccCCCCCC
Q 031216           13 HHISQNVKAKRFISCS----TNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-HSVGEDIGMVCDMEQPLE   87 (163)
Q Consensus        13 ~~~~~~~~~~~~~~~~----~~~~~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~-~~~g~~~~~l~g~~~~~g   87 (163)
                      +...++++..+|-...    ....-...+|+|+| .|+||+.+++.+. .-++++. ++|+ ... .....      ..+
T Consensus       120 ~~~~~~~~~g~w~~~~~~~~~~~~l~g~~vgIIG-~G~IG~~~A~~l~-~~G~~V~-~~d~~~~~-~~~~~------~~g  189 (320)
T 1gdh_A          120 GEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYG-FGSIGQALAKRAQ-GFDMDID-YFDTHRAS-SSDEA------SYQ  189 (320)
T ss_dssp             HHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEEC-CSHHHHHHHHHHH-TTTCEEE-EECSSCCC-HHHHH------HHT
T ss_pred             HHHHHHHHcCCCCccccccccCcCCCCCEEEEEC-cCHHHHHHHHHHH-HCCCEEE-EECCCCcC-hhhhh------hcC
Confidence            3344556666663111    01122347899999 7999999999987 4678876 4665 432 11111      224


Q ss_pred             cceeCCHHHHHhcccccCCccEEEEccC
Q 031216           88 IPVMSDLTMVLGSISQSKARAVVIDFTD  115 (163)
Q Consensus        88 i~v~~~l~ell~~~~~~~~~DVVIDfT~  115 (163)
                      +...+++++++.      ..|+|+...+
T Consensus       190 ~~~~~~l~ell~------~aDvVil~~p  211 (320)
T 1gdh_A          190 ATFHDSLDSLLS------VSQFFSLNAP  211 (320)
T ss_dssp             CEECSSHHHHHH------HCSEEEECCC
T ss_pred             cEEcCCHHHHHh------hCCEEEEecc
Confidence            444458999885      8999996654

>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A

Probab=96.78  E-value=0.00037  Score=58.03  Aligned_cols=89  Identities=9%  Similarity=-0.022  Sum_probs=58.6

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCC--CCcceeCCHHHHHhcccccCCccEEEE
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQP--LEIPVMSDLTMVLGSISQSKARAVVID  112 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~--~gi~v~~~l~ell~~~~~~~~~DVVID  112 (163)
                      ..|++|+| +|.||+.+++.+....+++.+.+++++.  .++.++...-..  .++. ++++++++       ++|+|+.
T Consensus       125 ~~~v~iIG-aG~~a~~~~~al~~~~~~~~V~v~~r~~--~~a~~la~~~~~~~~~~~-~~~~~e~v-------~aDvVi~  193 (322)
T 1omo_A          125 SSVFGFIG-CGTQAYFQLEALRRVFDIGEVKAYDVRE--KAAKKFVSYCEDRGISAS-VQPAEEAS-------RCDVLVT  193 (322)
T ss_dssp             CCEEEEEC-CSHHHHHHHHHHHHHSCCCEEEEECSSH--HHHHHHHHHHHHTTCCEE-ECCHHHHT-------SSSEEEE
T ss_pred             CCEEEEEc-CcHHHHHHHHHHHHhCCccEEEEECCCH--HHHHHHHHHHHhcCceEE-ECCHHHHh-------CCCEEEE
Confidence            46899999 6999999999998767788888998653  122222210000  2344 78888875       4799996


Q ss_pred             ccCchhHHHHH-HHHHHcCCcEEEe
Q 031216          113 FTDASTVYDNV-KQATAFGMRSVVY  136 (163)
Q Consensus       113 fT~p~~~~~~~-~~al~~G~~vVig  136 (163)
                      +|+. .. +.+ ...++.|++|+..
T Consensus       194 aTp~-~~-pv~~~~~l~~G~~V~~i  216 (322)
T 1omo_A          194 TTPS-RK-PVVKAEWVEEGTHINAI  216 (322)
T ss_dssp             CCCC-SS-CCBCGGGCCTTCEEEEC
T ss_pred             eeCC-CC-ceecHHHcCCCeEEEEC
Confidence            6643 22 222 2457889998854

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=96.78  E-value=0.0058  Score=50.19  Aligned_cols=111  Identities=14%  Similarity=0.125  Sum_probs=60.7

Q ss_pred             CCCCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC-------CCcchhhhccCCCCCCcceeCCHHHHHhcc
Q 031216           29 TNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-------VGEDIGMVCDMEQPLEIPVMSDLTMVLGSI  101 (163)
Q Consensus        29 ~~~~~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~-------~g~~~~~l~g~~~~~gi~v~~~l~ell~~~  101 (163)
                      ||-...++||+|+| .|.||..++..+.+ .+.++... .+..       .|.... ..+......+..+++++++    
T Consensus        13 ~~~~~~~~kI~IiG-aGa~G~~~a~~L~~-~G~~V~l~-~~~~~~~~i~~~g~~~~-~~~~~~~~~~~~~~~~~~~----   84 (318)
T 3hwr_A           13 ENLYFQGMKVAIMG-AGAVGCYYGGMLAR-AGHEVILI-ARPQHVQAIEATGLRLE-TQSFDEQVKVSASSDPSAV----   84 (318)
T ss_dssp             -------CEEEEES-CSHHHHHHHHHHHH-TTCEEEEE-CCHHHHHHHHHHCEEEE-CSSCEEEECCEEESCGGGG----
T ss_pred             hhhhccCCcEEEEC-cCHHHHHHHHHHHH-CCCeEEEE-EcHhHHHHHHhCCeEEE-cCCCcEEEeeeeeCCHHHc----
Confidence            44456779999999 59999999999874 57787766 3211       011000 0000001233455677553    


Q ss_pred             cccCCccEEEEccCchhHHHHHHHH---HHcCCcEEEeCCCCCHHHHHHHHHHh
Q 031216          102 SQSKARAVVIDFTDASTVYDNVKQA---TAFGMRSVVYVPHIQLETVSALSAFC  152 (163)
Q Consensus       102 ~~~~~~DVVIDfT~p~~~~~~~~~a---l~~G~~vVigttg~~~e~~~~L~~~A  152 (163)
                         .++|+||.++.+....+.+...   +..+..+|.-+.|++.++  .|.+.-
T Consensus        85 ---~~~D~vilavk~~~~~~~l~~l~~~l~~~~~iv~~~nGi~~~~--~l~~~~  133 (318)
T 3hwr_A           85 ---QGADLVLFCVKSTDTQSAALAMKPALAKSALVLSLQNGVENAD--TLRSLL  133 (318)
T ss_dssp             ---TTCSEEEECCCGGGHHHHHHHHTTTSCTTCEEEEECSSSSHHH--HHHHHC
T ss_pred             ---CCCCEEEEEcccccHHHHHHHHHHhcCCCCEEEEeCCCCCcHH--HHHHHc
Confidence               3899999666555444444433   334666777777997642  444443

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=96.76  E-value=0.0058  Score=53.27  Aligned_cols=37  Identities=24%  Similarity=0.327  Sum_probs=30.9

Q ss_pred             CCC-CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216           32 PQS-NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (163)
Q Consensus        32 ~~~-~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~   69 (163)
                      ..+ |+||.|+|++|.+|+.+++.+.+ .+.+++++..+
T Consensus       143 ~~~k~m~VLVTGatG~IG~~l~~~L~~-~G~~V~~l~R~  180 (516)
T 3oh8_A          143 FDGSPLTVAITGSRGLVGRALTAQLQT-GGHEVIQLVRK  180 (516)
T ss_dssp             SCCCCCEEEEESTTSHHHHHHHHHHHH-TTCEEEEEESS
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHH-CCCEEEEEECC
Confidence            344 78999999999999999999985 58898877654

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=96.75  E-value=0.0073  Score=49.00  Aligned_cols=34  Identities=29%  Similarity=0.373  Sum_probs=28.5

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid   68 (163)
                      .|++|.|+|++|.+|+.+++.+.+ .+.+++++..
T Consensus        20 ~~~~vlVTGatG~iG~~l~~~L~~-~g~~V~~~~r   53 (333)
T 2q1w_A           20 HMKKVFITGICGQIGSHIAELLLE-RGDKVVGIDN   53 (333)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEEC
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHH-CCCEEEEEEC
Confidence            367999999999999999999985 5788887654

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=96.73  E-value=0.0079  Score=49.00  Aligned_cols=34  Identities=21%  Similarity=0.195  Sum_probs=28.7

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid   68 (163)
                      .|+||.|+|++|.+|+.+++.+.+ .+.+++++..
T Consensus        26 ~~~~vlVtGatG~iG~~l~~~L~~-~g~~V~~~~r   59 (352)
T 1sb8_A           26 QPKVWLITGVAGFIGSNLLETLLK-LDQKVVGLDN   59 (352)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEEC
T ss_pred             cCCeEEEECCCcHHHHHHHHHHHH-CCCEEEEEeC
Confidence            357999999999999999999985 4788887654

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=96.73  E-value=0.0075  Score=47.52  Aligned_cols=34  Identities=15%  Similarity=0.164  Sum_probs=28.2

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~   69 (163)
                      +|+||.|+|+ |.+|+.+++.+.+ .+.++.++..+
T Consensus         4 m~~~ilVtGa-G~iG~~l~~~L~~-~g~~V~~~~r~   37 (286)
T 3ius_A            4 MTGTLLSFGH-GYTARVLSRALAP-QGWRIIGTSRN   37 (286)
T ss_dssp             -CCEEEEETC-CHHHHHHHHHHGG-GTCEEEEEESC
T ss_pred             CcCcEEEECC-cHHHHHHHHHHHH-CCCEEEEEEcC
Confidence            4689999997 9999999999985 48899877653

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=96.73  E-value=0.012  Score=45.22  Aligned_cols=32  Identities=28%  Similarity=0.320  Sum_probs=26.8

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCc--EEEEEEe
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGM--EVAGAID   68 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~--eLvgvid   68 (163)
                      ++|.|+|++|.+|+.+++.+.+. +.  +++++..
T Consensus        19 ~~vlVtGasg~iG~~l~~~L~~~-G~~~~V~~~~r   52 (242)
T 2bka_A           19 KSVFILGASGETGRVLLKEILEQ-GLFSKVTLIGR   52 (242)
T ss_dssp             CEEEEECTTSHHHHHHHHHHHHH-TCCSEEEEEES
T ss_pred             CeEEEECCCcHHHHHHHHHHHcC-CCCCEEEEEEc
Confidence            58999999999999999999864 56  8876544

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=96.71  E-value=0.0029  Score=51.14  Aligned_cols=70  Identities=17%  Similarity=0.248  Sum_probs=47.1

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT  114 (163)
                      ..||+|+| .|.||+.+++.+.+. +.++ .+++++.  .++.++..   ..++.+++++++++.      ++|+||.+|
T Consensus       129 ~~~v~iiG-aG~~g~aia~~L~~~-g~~V-~v~~r~~--~~~~~l~~---~~g~~~~~~~~~~~~------~aDiVi~at  194 (275)
T 2hk9_A          129 EKSILVLG-AGGASRAVIYALVKE-GAKV-FLWNRTK--EKAIKLAQ---KFPLEVVNSPEEVID------KVQVIVNTT  194 (275)
T ss_dssp             GSEEEEEC-CSHHHHHHHHHHHHH-TCEE-EEECSSH--HHHHHHTT---TSCEEECSCGGGTGG------GCSEEEECS
T ss_pred             CCEEEEEC-chHHHHHHHHHHHHc-CCEE-EEEECCH--HHHHHHHH---HcCCeeehhHHhhhc------CCCEEEEeC
Confidence            46899999 599999999998865 5655 4667542  22233321   345556667777664      789999777


Q ss_pred             Cchh
Q 031216          115 DAST  118 (163)
Q Consensus       115 ~p~~  118 (163)
                      .+..
T Consensus       195 p~~~  198 (275)
T 2hk9_A          195 SVGL  198 (275)
T ss_dssp             STTS
T ss_pred             CCCC
Confidence            5443

>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A*

Probab=96.71  E-value=0.0073  Score=49.32  Aligned_cols=32  Identities=22%  Similarity=0.317  Sum_probs=26.3

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCC-cEEEEEEe
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARG-MEVAGAID   68 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~-~eLvgvid   68 (163)
                      ++|.|+|++|.+|+.+++.+.+. + .+++++..
T Consensus        47 ~~vlVtGatG~iG~~l~~~L~~~-g~~~V~~~~r   79 (357)
T 2x6t_A           47 RMIIVTGGAGFIGSNIVKALNDK-GITDILVVDN   79 (357)
T ss_dssp             -CEEEETTTSHHHHHHHHHHHHT-TCCCEEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHC-CCcEEEEEec
Confidence            68999999999999999999865 5 77776543

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=96.71  E-value=0.0073  Score=52.87  Aligned_cols=70  Identities=13%  Similarity=0.222  Sum_probs=44.4

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhcc----CCC------------CCCcceeCCHHHH
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCD----MEQ------------PLEIPVMSDLTMV   97 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g----~~~------------~~gi~v~~~l~el   97 (163)
                      +.+||+|+| +|+||..++..+. ..+.++++ +|++.  ..+..+..    +..            ...+..++|++++
T Consensus         7 ~~~~I~VIG-~G~vG~~lA~~la-~~G~~V~~-~d~~~--~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~ttd~~~a   81 (478)
T 2y0c_A            7 GSMNLTIIG-SGSVGLVTGACLA-DIGHDVFC-LDVDQ--AKIDILNNGGVPIHEPGLKEVIARNRSAGRLRFSTDIEAA   81 (478)
T ss_dssp             CCCEEEEEC-CSHHHHHHHHHHH-HTTCEEEE-ECSCH--HHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEECCHHHH
T ss_pred             CCceEEEEC-cCHHHHHHHHHHH-hCCCEEEE-EECCH--HHHHHHHCCCCCcCCCCHHHHHHHhcccCCEEEECCHHHH
Confidence            448999999 6999999999887 46788765 56421  11111100    000            1134567888877


Q ss_pred             HhcccccCCccEEEEcc
Q 031216           98 LGSISQSKARAVVIDFT  114 (163)
Q Consensus        98 l~~~~~~~~~DVVIDfT  114 (163)
                      +.      .+|+||.+.
T Consensus        82 ~~------~aDvviiaV   92 (478)
T 2y0c_A           82 VA------HGDVQFIAV   92 (478)
T ss_dssp             HH------HCSEEEECC
T ss_pred             hh------cCCEEEEEe
Confidence            75      799998554

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=96.71  E-value=0.0086  Score=47.36  Aligned_cols=94  Identities=18%  Similarity=0.147  Sum_probs=54.0

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCC----cce-eCCHHHHHhcccccCCccEE
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE----IPV-MSDLTMVLGSISQSKARAVV  110 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~g----i~v-~~~l~ell~~~~~~~~~DVV  110 (163)
                      +||+|+| .|.||..++..+.+ .+.++.. ++++..  ....+... ...+    ..+ .++. +.+.      ++|+|
T Consensus         1 m~i~iiG-~G~~G~~~a~~l~~-~g~~V~~-~~r~~~--~~~~l~~~-~~~~~~~~~~~~~~~~-~~~~------~~d~v   67 (291)
T 1ks9_A            1 MKITVLG-CGALGQLWLTALCK-QGHEVQG-WLRVPQ--PYCSVNLV-ETDGSIFNESLTANDP-DFLA------TSDLL   67 (291)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHH-TTCEEEE-ECSSCC--SEEEEEEE-CTTSCEEEEEEEESCH-HHHH------TCSEE
T ss_pred             CeEEEEC-cCHHHHHHHHHHHh-CCCCEEE-EEcCcc--ceeeEEEE-cCCCceeeeeeeecCc-cccC------CCCEE
Confidence            4899999 59999999999874 5677764 564321  11111100 0011    111 3444 4443      79999


Q ss_pred             EEccCchhHHHHHHHHH---HcCCcEEEeCCCCCH
Q 031216          111 IDFTDASTVYDNVKQAT---AFGMRSVVYVPHIQL  142 (163)
Q Consensus       111 IDfT~p~~~~~~~~~al---~~G~~vVigttg~~~  142 (163)
                      |-++.+....+.+....   ..+..+|.-+.|++.
T Consensus        68 i~~v~~~~~~~v~~~l~~~l~~~~~vv~~~~g~~~  102 (291)
T 1ks9_A           68 LVTLKAWQVSDAVKSLASTLPVTTPILLIHNGMGT  102 (291)
T ss_dssp             EECSCGGGHHHHHHHHHTTSCTTSCEEEECSSSCT
T ss_pred             EEEecHHhHHHHHHHHHhhCCCCCEEEEecCCCCc
Confidence            96666665555444332   335667765667643

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=96.70  E-value=0.0034  Score=52.60  Aligned_cols=85  Identities=15%  Similarity=0.198  Sum_probs=52.6

Q ss_pred             ccccccccccceeeeccCCCCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCccee
Q 031216           12 MHHISQNVKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM   91 (163)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~   91 (163)
                      ++...++++..+|-.. ....-.-.+|||+| +|+||+.+++.+.. -|+++.+ +|+...  ....+      .+...+
T Consensus       118 ~~~~~~~~~~g~W~~~-~~~~l~g~tvGIIG-lG~IG~~vA~~l~~-~G~~V~~-~dr~~~--~~~~~------~~~~~~  185 (324)
T 3hg7_A          118 LPLYREQQKQRLWQSH-PYQGLKGRTLLILG-TGSIGQHIAHTGKH-FGMKVLG-VSRSGR--ERAGF------DQVYQL  185 (324)
T ss_dssp             HHHHHHHHHTTCCCCC-CCCCSTTCEEEEEC-CSHHHHHHHHHHHH-TTCEEEE-ECSSCC--CCTTC------SEEECG
T ss_pred             hHHHHHHHhhCCCcCC-CCcccccceEEEEE-ECHHHHHHHHHHHh-CCCEEEE-EcCChH--Hhhhh------hccccc
Confidence            3444455566665321 12223347899999 79999999999874 5899875 564321  11111      111224


Q ss_pred             CCHHHHHhcccccCCccEEEEcc
Q 031216           92 SDLTMVLGSISQSKARAVVIDFT  114 (163)
Q Consensus        92 ~~l~ell~~~~~~~~~DVVIDfT  114 (163)
                      .++++++.      ..|+|+...
T Consensus       186 ~~l~ell~------~aDvV~l~l  202 (324)
T 3hg7_A          186 PALNKMLA------QADVIVSVL  202 (324)
T ss_dssp             GGHHHHHH------TCSEEEECC
T ss_pred             CCHHHHHh------hCCEEEEeC
Confidence            68999885      899988554

>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1

Probab=96.70  E-value=0.0087  Score=53.67  Aligned_cols=36  Identities=22%  Similarity=0.176  Sum_probs=30.7

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~   69 (163)
                      ++++|.|+|++|.+|+.+++.+.+.++.+++++..+
T Consensus       314 ~~~~VLVTGatG~IG~~l~~~Ll~~~g~~V~~~~r~  349 (660)
T 1z7e_A          314 RRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIG  349 (660)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHSSSEEEEEEESC
T ss_pred             cCceEEEEcCCcHHHHHHHHHHHhcCCCEEEEEEcC
Confidence            568999999999999999999987768898876543

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=96.70  E-value=0.0029  Score=52.80  Aligned_cols=89  Identities=12%  Similarity=0.061  Sum_probs=55.2

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEc
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDf  113 (163)
                      ...+|+|+| +|+||+.+++.+.. -++++. ++|+... .+...      ..++. +.++++++.      ..|+|+..
T Consensus       149 ~g~~vgIIG-~G~iG~~iA~~l~~-~G~~V~-~~d~~~~-~~~~~------~~g~~-~~~l~~~l~------~aDvVil~  211 (334)
T 2dbq_A          149 YGKTIGIIG-LGRIGQAIAKRAKG-FNMRIL-YYSRTRK-EEVER------ELNAE-FKPLEDLLR------ESDFVVLA  211 (334)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHH-TTCEEE-EECSSCC-HHHHH------HHCCE-ECCHHHHHH------HCSEEEEC
T ss_pred             CCCEEEEEc-cCHHHHHHHHHHHh-CCCEEE-EECCCcc-hhhHh------hcCcc-cCCHHHHHh------hCCEEEEC
Confidence            357899999 69999999999874 688876 4665432 11111      12333 358988885      89999976


Q ss_pred             cCchh-H---H-HHHHHHHHcCCcEEEeCCC
Q 031216          114 TDAST-V---Y-DNVKQATAFGMRSVVYVPH  139 (163)
Q Consensus       114 T~p~~-~---~-~~~~~al~~G~~vVigttg  139 (163)
                      ..+.. .   . +.....++.|.-+|.-.+|
T Consensus       212 vp~~~~t~~~i~~~~~~~mk~~ailIn~srg  242 (334)
T 2dbq_A          212 VPLTRETYHLINEERLKLMKKTAILINIARG  242 (334)
T ss_dssp             CCCCTTTTTCBCHHHHHHSCTTCEEEECSCG
T ss_pred             CCCChHHHHhhCHHHHhcCCCCcEEEECCCC
Confidence            64332 1   1 2333445566655543334

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=96.69  E-value=0.0094  Score=47.73  Aligned_cols=95  Identities=19%  Similarity=0.282  Sum_probs=56.8

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC-----Cc-------chhh-----h---c-cCCCCCCccee--
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-----GE-------DIGM-----V---C-DMEQPLEIPVM--   91 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~-----g~-------~~~~-----l---~-g~~~~~gi~v~--   91 (163)
                      ..||.|+| .|.+|..+++.+. ..|+.-+.++|.+..     ++       +++.     +   + .+.....+..+  
T Consensus        28 ~~~VlvvG-~GglG~~va~~La-~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~~  105 (251)
T 1zud_1           28 DSQVLIIG-LGGLGTPAALYLA-GAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTALQQ  105 (251)
T ss_dssp             TCEEEEEC-CSTTHHHHHHHHH-HTTCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECS
T ss_pred             cCcEEEEc-cCHHHHHHHHHHH-HcCCCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHCCCCEEEEEec
Confidence            36899999 5999999999987 568866678884321     10       0000     0   0 00000111111  


Q ss_pred             ----CCHHHHHhcccccCCccEEEEccCc-hhHHHHHHHHHHcCCcEEEeC
Q 031216           92 ----SDLTMVLGSISQSKARAVVIDFTDA-STVYDNVKQATAFGMRSVVYV  137 (163)
Q Consensus        92 ----~~l~ell~~~~~~~~~DVVIDfT~p-~~~~~~~~~al~~G~~vVigt  137 (163)
                          +++++++.      ++|+|||++.. +.-......|.+.++++|.+.
T Consensus       106 ~~~~~~~~~~~~------~~DvVi~~~d~~~~r~~l~~~~~~~~~p~i~~~  150 (251)
T 1zud_1          106 RLTGEALKDAVA------RADVVLDCTDNMATRQEINAACVALNTPLITAS  150 (251)
T ss_dssp             CCCHHHHHHHHH------HCSEEEECCSSHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             cCCHHHHHHHHh------cCCEEEECCCCHHHHHHHHHHHHHhCCCEEEEe
Confidence                12344553      78999998843 333455577888999998654

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=96.69  E-value=0.017  Score=47.70  Aligned_cols=89  Identities=17%  Similarity=0.131  Sum_probs=53.5

Q ss_pred             CCCeeEEEEcCCCHHHHH-HHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCccee--CCHHHHHhcccccCCccE
Q 031216           33 QSNIKVIINGAVKEIGRA-AVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAV  109 (163)
Q Consensus        33 ~~~irV~VvGa~G~mG~~-i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~--~~l~ell~~~~~~~~~DV  109 (163)
                      +.|.||.++| .|.+|.. +++.+. ..|.++.+ .|..........+.    ..|+.++  .+.+.+..     ..+|+
T Consensus         2 ~~~~~i~~iG-iGg~Gms~~A~~L~-~~G~~V~~-~D~~~~~~~~~~L~----~~gi~v~~g~~~~~l~~-----~~~d~   69 (326)
T 3eag_A            2 NAMKHIHIIG-IGGTFMGGLAAIAK-EAGFEVSG-CDAKMYPPMSTQLE----ALGIDVYEGFDAAQLDE-----FKADV   69 (326)
T ss_dssp             -CCCEEEEES-CCSHHHHHHHHHHH-HTTCEEEE-EESSCCTTHHHHHH----HTTCEEEESCCGGGGGS-----CCCSE
T ss_pred             CCCcEEEEEE-ECHHHHHHHHHHHH-hCCCEEEE-EcCCCCcHHHHHHH----hCCCEEECCCCHHHcCC-----CCCCE
Confidence            4578999999 5999986 666654 67999874 67532111112222    3466665  34444331     16898


Q ss_pred             EEEcc--CchhHHHHHHHHHHcCCcEEE
Q 031216          110 VIDFT--DASTVYDNVKQATAFGMRSVV  135 (163)
Q Consensus       110 VIDfT--~p~~~~~~~~~al~~G~~vVi  135 (163)
                      || .|  .|.. .+.+..|.++|++++.
T Consensus        70 vV-~Spgi~~~-~p~~~~a~~~gi~v~~   95 (326)
T 3eag_A           70 YV-IGNVAKRG-MDVVEAILNLGLPYIS   95 (326)
T ss_dssp             EE-ECTTCCTT-CHHHHHHHHTTCCEEE
T ss_pred             EE-ECCCcCCC-CHHHHHHHHcCCcEEe
Confidence            88 44  2333 3445677888888765

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=96.68  E-value=0.018  Score=41.45  Aligned_cols=107  Identities=7%  Similarity=0.033  Sum_probs=56.8

Q ss_pred             CCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcce-eCCH--HHHHhcccccCCccE
Q 031216           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDL--TMVLGSISQSKARAV  109 (163)
Q Consensus        33 ~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v-~~~l--~ell~~~~~~~~~DV  109 (163)
                      ..+-+|+|+| .|++|+.+++.+.+ .+.++++ +|++.  .....+.    ..++.+ +.|.  ++.+.+. .-.++|+
T Consensus         5 ~~~~~viIiG-~G~~G~~la~~L~~-~g~~v~v-id~~~--~~~~~~~----~~g~~~i~gd~~~~~~l~~a-~i~~ad~   74 (140)
T 3fwz_A            5 DICNHALLVG-YGRVGSLLGEKLLA-SDIPLVV-IETSR--TRVDELR----ERGVRAVLGNAANEEIMQLA-HLECAKW   74 (140)
T ss_dssp             CCCSCEEEEC-CSHHHHHHHHHHHH-TTCCEEE-EESCH--HHHHHHH----HTTCEEEESCTTSHHHHHHT-TGGGCSE
T ss_pred             cCCCCEEEEC-cCHHHHHHHHHHHH-CCCCEEE-EECCH--HHHHHHH----HcCCCEEECCCCCHHHHHhc-CcccCCE
Confidence            3346899999 69999999999874 6788875 56432  1122221    223332 2222  1222210 0147899


Q ss_pred             EEEccCchhHH-HHHHHHHHc--CCcEEEeCCCCCHHHHHHHHHH
Q 031216          110 VIDFTDASTVY-DNVKQATAF--GMRSVVYVPHIQLETVSALSAF  151 (163)
Q Consensus       110 VIDfT~p~~~~-~~~~~al~~--G~~vVigttg~~~e~~~~L~~~  151 (163)
                      ||.++..+... ..+..+.+.  ++++|.-  ..+++..+.|.++
T Consensus        75 vi~~~~~~~~n~~~~~~a~~~~~~~~iiar--~~~~~~~~~l~~~  117 (140)
T 3fwz_A           75 LILTIPNGYEAGEIVASARAKNPDIEIIAR--AHYDDEVAYITER  117 (140)
T ss_dssp             EEECCSCHHHHHHHHHHHHHHCSSSEEEEE--ESSHHHHHHHHHT
T ss_pred             EEEECCChHHHHHHHHHHHHHCCCCeEEEE--ECCHHHHHHHHHC
Confidence            88555433322 233333332  4555542  2456666666654

>1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A*

Probab=96.68  E-value=0.015  Score=47.29  Aligned_cols=33  Identities=27%  Similarity=0.328  Sum_probs=28.5

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid   68 (163)
                      |||.|+|++|.+|+.+++.+.+..+.+++++..
T Consensus         1 MkvlVTGasG~iG~~l~~~L~~~~g~~V~~~~r   33 (361)
T 1kew_A            1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDK   33 (361)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHHCSCEEEEEEC
T ss_pred             CEEEEECCCchHhHHHHHHHHhcCCCeEEEEec
Confidence            489999999999999999998766889887643

>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2

Probab=96.67  E-value=0.0077  Score=47.71  Aligned_cols=31  Identities=23%  Similarity=0.353  Sum_probs=25.8

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCC-cEEEEEEe
Q 031216           37 KVIINGAVKEIGRAAVIAVTKARG-MEVAGAID   68 (163)
Q Consensus        37 rV~VvGa~G~mG~~i~~~i~~~~~-~eLvgvid   68 (163)
                      ||.|+|++|.+|+.+++.+.+. + .+++++..
T Consensus         1 ~vlVtGatG~iG~~l~~~L~~~-g~~~V~~~~r   32 (310)
T 1eq2_A            1 MIIVTGGAGFIGSNIVKALNDK-GITDILVVDN   32 (310)
T ss_dssp             CEEEETTTSHHHHHHHHHHHTT-TCCCEEEEEC
T ss_pred             CEEEEcCccHHHHHHHHHHHHC-CCcEEEEEcc
Confidence            5899999999999999999864 5 77776543

>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2

Probab=96.67  E-value=0.0067  Score=48.85  Aligned_cols=33  Identities=15%  Similarity=0.215  Sum_probs=27.8

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid   68 (163)
                      |+||.|+|++|.+|+.+++.+.+ .+.+++++..
T Consensus         1 M~~vlVTGatG~iG~~l~~~L~~-~g~~V~~~~r   33 (347)
T 1orr_A            1 MAKLLITGGCGFLGSNLASFALS-QGIDLIVFDN   33 (347)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHH-TTCEEEEEEC
T ss_pred             CcEEEEeCCCchhHHHHHHHHHh-CCCEEEEEeC
Confidence            57899999999999999999985 6889887643

>1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=96.67  E-value=0.0082  Score=49.34  Aligned_cols=33  Identities=21%  Similarity=0.295  Sum_probs=28.2

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~   69 (163)
                      .+|.|+|++|.+|+.+++.+.+ .+.+++++..+
T Consensus        25 ~~vlVtGatG~iG~~l~~~L~~-~g~~V~~~~r~   57 (375)
T 1t2a_A           25 NVALITGITGQDGSYLAEFLLE-KGYEVHGIVRR   57 (375)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEEEECC
T ss_pred             cEEEEECCCchHHHHHHHHHHH-CCCEEEEEECC
Confidence            6899999999999999999985 57898876543

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=96.66  E-value=0.0049  Score=50.95  Aligned_cols=85  Identities=15%  Similarity=0.086  Sum_probs=53.2

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEc
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDf  113 (163)
                      ...+|+|+| .|+||+.+++.+.. -++++. ++|+... .+...      ..++.. .++++++.      ..|+|+..
T Consensus       141 ~g~~vgIiG-~G~IG~~~A~~l~~-~G~~V~-~~d~~~~-~~~~~------~~g~~~-~~l~ell~------~aDvV~l~  203 (307)
T 1wwk_A          141 EGKTIGIIG-FGRIGYQVAKIANA-LGMNIL-LYDPYPN-EERAK------EVNGKF-VDLETLLK------ESDVVTIH  203 (307)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHH-TTCEEE-EECSSCC-HHHHH------HTTCEE-CCHHHHHH------HCSEEEEC
T ss_pred             CCceEEEEc-cCHHHHHHHHHHHH-CCCEEE-EECCCCC-hhhHh------hcCccc-cCHHHHHh------hCCEEEEe
Confidence            347899999 79999999999874 578876 4665431 11111      234433 48999885      89999966


Q ss_pred             cCchh-H---H-HHHHHHHHcCCcEEE
Q 031216          114 TDAST-V---Y-DNVKQATAFGMRSVV  135 (163)
Q Consensus       114 T~p~~-~---~-~~~~~al~~G~~vVi  135 (163)
                      .+... .   . +.....++.|.-+|-
T Consensus       204 ~p~~~~t~~li~~~~l~~mk~ga~lin  230 (307)
T 1wwk_A          204 VPLVESTYHLINEERLKLMKKTAILIN  230 (307)
T ss_dssp             CCCSTTTTTCBCHHHHHHSCTTCEEEE
T ss_pred             cCCChHHhhhcCHHHHhcCCCCeEEEE
Confidence            53221 1   1 233345566665554

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=96.63  E-value=0.002  Score=51.52  Aligned_cols=33  Identities=30%  Similarity=0.420  Sum_probs=28.9

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~   69 (163)
                      |||.|+|++|.+|+.+++.+. ..|.+++++..+
T Consensus         1 MkILVTGatGfIG~~L~~~L~-~~G~~V~~l~R~   33 (298)
T 4b4o_A            1 MRVLVGGGTGFIGTALTQLLN-ARGHEVTLVSRK   33 (298)
T ss_dssp             CEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESS
T ss_pred             CEEEEECCCCHHHHHHHHHHH-HCCCEEEEEECC
Confidence            689999999999999999987 468999987653

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=96.63  E-value=0.0026  Score=52.98  Aligned_cols=84  Identities=13%  Similarity=0.087  Sum_probs=50.6

Q ss_pred             cccccccccceeeeccCCCCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeC
Q 031216           13 HHISQNVKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS   92 (163)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~   92 (163)
                      +...++++..+|-.. ....-.-.+|+|+| .|+||+.+++.+. .-|+++.+ +|+...  ....+.    .  .....
T Consensus       118 ~~~~~~~~~g~W~~~-~~~~l~g~tvGIiG-~G~IG~~vA~~l~-~~G~~V~~-~dr~~~--~~~~~~----~--~~~~~  185 (315)
T 3pp8_A          118 DDYQALKNQALWKPL-PEYTREEFSVGIMG-AGVLGAKVAESLQ-AWGFPLRC-WSRSRK--SWPGVE----S--YVGRE  185 (315)
T ss_dssp             HHHHHHHHTTCCCCC-CCCCSTTCCEEEEC-CSHHHHHHHHHHH-TTTCCEEE-EESSCC--CCTTCE----E--EESHH
T ss_pred             hHHHHHHHhcccCCC-CCCCcCCCEEEEEe-eCHHHHHHHHHHH-HCCCEEEE-EcCCch--hhhhhh----h--hcccC
Confidence            333445555555322 22223347899999 7999999999987 56899886 454321  111100    0  00125


Q ss_pred             CHHHHHhcccccCCccEEEEcc
Q 031216           93 DLTMVLGSISQSKARAVVIDFT  114 (163)
Q Consensus        93 ~l~ell~~~~~~~~~DVVIDfT  114 (163)
                      ++++++.      ..|+|+...
T Consensus       186 ~l~ell~------~aDiV~l~~  201 (315)
T 3pp8_A          186 ELRAFLN------QTRVLINLL  201 (315)
T ss_dssp             HHHHHHH------TCSEEEECC
T ss_pred             CHHHHHh------hCCEEEEec
Confidence            8889885      899988554

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=96.61  E-value=0.009  Score=50.56  Aligned_cols=98  Identities=12%  Similarity=0.140  Sum_probs=60.6

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC----------------CCcc----hhh-hccCCCCCCcceeC-
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS----------------VGED----IGM-VCDMEQPLEIPVMS-   92 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~----------------~g~~----~~~-l~g~~~~~gi~v~~-   92 (163)
                      ..||.|+| .|..|..+++.+. ..|+.=..++|.+.                .|+.    +.+ +..+.....+..+. 
T Consensus        34 ~~~VlIvG-aGGlGs~va~~La-~aGVg~ItlvD~D~Ve~SNL~RQ~l~~~~diG~~Ka~aaa~~L~~inP~v~v~~~~~  111 (340)
T 3rui_A           34 NTKVLLLG-AGTLGCYVSRALI-AWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDATGVKL  111 (340)
T ss_dssp             TCEEEEEC-CSHHHHHHHHHHH-HTTCCEEEEECCCBCCTTSTTTSTTCCGGGTTSBHHHHHHHHHHHHCTTCEEEEECC
T ss_pred             CCEEEEEC-CCHHHHHHHHHHH-HcCCCEEEEecCCEeccccccccccCChhhcChHHHHHHHHHHHHhCCCCEEEEEec
Confidence            47899999 5999999999987 56887777888431                0111    000 00000011111111 


Q ss_pred             --------------------CHHHHHhcccccCCccEEEEccC-chhHHHHHHHHHHcCCcEEEeCCCC
Q 031216           93 --------------------DLTMVLGSISQSKARAVVIDFTD-ASTVYDNVKQATAFGMRSVVYVPHI  140 (163)
Q Consensus        93 --------------------~l~ell~~~~~~~~~DVVIDfT~-p~~~~~~~~~al~~G~~vVigttg~  140 (163)
                                          ++++++.      ++|+|||++. ++.-...-..|.++|+++|.+..|+
T Consensus       112 ~i~~~g~~~~~~~~~~~~~~~l~~~l~------~~DlVvd~tDn~~tR~lin~~c~~~~~plI~aa~G~  174 (340)
T 3rui_A          112 SIPMIGHKLVNEEAQHKDFDRLRALIK------EHDIIFLLVDSRESRWLPSLLSNIENKTVINAALGF  174 (340)
T ss_dssp             CCCCTTSCCSCHHHHHHHHHHHHHHHH------HCSEEEECCSSTGGGHHHHHHHHHTTCEEEEEEECS
T ss_pred             cccccCcccchhhhhcCCHHHHHhhhc------cCCEEEecCCCHHHHHHHHHHHHHcCCcEEEeeecc
Confidence                                2344554      7999999984 4444566688999999998765444

>1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A*

Probab=96.61  E-value=0.03  Score=45.05  Aligned_cols=33  Identities=18%  Similarity=0.193  Sum_probs=27.5

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhc--CC---cEEEEEEe
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKA--RG---MEVAGAID   68 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~--~~---~eLvgvid   68 (163)
                      |||.|+|++|.+|+.+++.+.+.  ++   .+++++..
T Consensus         1 M~vlVTGatG~iG~~l~~~L~~~~~~g~~~~~V~~~~r   38 (337)
T 1r6d_A            1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDS   38 (337)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEEC
T ss_pred             CeEEEECCccHHHHHHHHHHHhhhcCCCCceEEEEEEC
Confidence            48999999999999999999864  26   88887644

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=95.63  E-value=0.00033  Score=54.52  Aligned_cols=92  Identities=11%  Similarity=0.056  Sum_probs=53.9

Q ss_pred             CCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEE
Q 031216           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (163)
Q Consensus        33 ~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVID  112 (163)
                      .+.+||+|+| .|.||+.+++.+.+ .+.++. ++++...   ...+.    ..++..+ ++++++.      .+|+||-
T Consensus        17 ~~~~~I~iIG-~G~mG~~la~~L~~-~G~~V~-~~~r~~~---~~~~~----~~g~~~~-~~~~~~~------~aDvVil   79 (201)
T 2yjz_A           17 EKQGVVCIFG-TGDFGKSLGLKMLQ-CGYSVV-FGSRNPQ---VSSLL----PRGAEVL-CYSEAAS------RSDVIVL   79 (201)
Confidence            3457999999 69999999999874 467765 3554321   11221    2344444 6777664      8999996


Q ss_pred             ccCchhHHHHHH-HHHHcCCcEEEeCCCCC
Q 031216          113 FTDASTVYDNVK-QATAFGMRSVVYVPHIQ  141 (163)
Q Consensus       113 fT~p~~~~~~~~-~al~~G~~vVigttg~~  141 (163)
                      ++.|....+.+. .....|.-+|.-.+|.+
T Consensus        80 av~~~~~~~v~~l~~~~~~~ivI~~~~G~~  109 (201)
T 2yjz_A           80 AVHREHYDFLAELADSLKGRVLIDVSNNQK  109 (201)
Confidence            665543333221 11234555554444653

>2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii}

Probab=96.57  E-value=0.027  Score=45.24  Aligned_cols=33  Identities=18%  Similarity=0.291  Sum_probs=27.9

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcC-CcEEEEEEe
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAID   68 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~-~~eLvgvid   68 (163)
                      +||.|+|++|.+|+.+++.+.+.. +.+++++..
T Consensus         4 m~vlVTGatG~iG~~l~~~L~~~g~~~~V~~~~r   37 (336)
T 2hun_A            4 MKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDK   37 (336)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEEC
T ss_pred             CeEEEECCCchHHHHHHHHHHHhCCCCEEEEEec
Confidence            589999999999999999998764 588887543

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=96.56  E-value=0.013  Score=47.37  Aligned_cols=33  Identities=15%  Similarity=0.298  Sum_probs=28.1

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid   68 (163)
                      .++|.|+|++|.+|+.+++.+.+ .+.+++++..
T Consensus        20 ~~~vlVTGasG~iG~~l~~~L~~-~g~~V~~~~r   52 (330)
T 2pzm_A           20 HMRILITGGAGCLGSNLIEHWLP-QGHEILVIDN   52 (330)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHGG-GTCEEEEEEC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHH-CCCEEEEEEC
Confidence            36899999999999999999985 5789887654

>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A

Probab=96.56  E-value=0.0038  Score=51.46  Aligned_cols=72  Identities=13%  Similarity=0.196  Sum_probs=48.5

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEccC
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT~  115 (163)
                      |||.|+|++|.+|+.+++.+.+....+++. +|+..   +               .+++++++.      ++|+||.+..
T Consensus         1 M~VlVtGatG~iG~~l~~~L~~~g~~~v~~-~d~~~---d---------------~~~l~~~~~------~~d~Vih~a~   55 (369)
T 3st7_A            1 MNIVITGAKGFVGKNLKADLTSTTDHHIFE-VHRQT---K---------------EEELESALL------KADFIVHLAG   55 (369)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCCCEEEE-CCTTC---C---------------HHHHHHHHH------HCSEEEECCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCEEEE-ECCCC---C---------------HHHHHHHhc------cCCEEEECCc
Confidence            589999999999999999998765547764 34310   0               134566664      7899998652


Q ss_pred             c--------------hhHHHHHHHHHHcCCc
Q 031216          116 A--------------STVYDNVKQATAFGMR  132 (163)
Q Consensus       116 p--------------~~~~~~~~~al~~G~~  132 (163)
                      +              ......+..|.+.|+.
T Consensus        56 ~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~   86 (369)
T 3st7_A           56 VNRPEHDKEFSLGNVSYLDHVLDILTRNTKK   86 (369)
T ss_dssp             SBCTTCSTTCSSSCCBHHHHHHHHHTTCSSC
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            1              1234566777777744

>1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET: NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7 c.58.1.1

Probab=96.55  E-value=0.0044  Score=53.87  Aligned_cols=112  Identities=14%  Similarity=0.129  Sum_probs=72.2

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhhccCCCCCCc------------ceeCCHHHH
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMVCDMEQPLEI------------PVMSDLTMV   97 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~-----~~g~~~~~l~g~~~~~gi------------~v~~~l~el   97 (163)
                      ..+|+|.| .|.+|+..++.+. ..+.+++++.|+.     +.|-|..++.......+.            ..+.+.+++
T Consensus       210 gk~vaVqG-~GnVG~~aa~~L~-e~GakVVavsD~~G~i~dp~GlD~~~l~~~k~~~g~~~v~~y~~~~~~~~~~~~~~~  287 (421)
T 1v9l_A          210 GKTVAIQG-MGNVGRWTAYWLE-KMGAKVIAVSDINGVAYRKEGLNVELIQKNKGLTGPALVELFTTKDNAEFVKNPDAI  287 (421)
T ss_dssp             TCEEEEEC-CSHHHHHHHHHHH-TTTCEEEEEECSSCEEECTTCCCTHHHHHTTTSCHHHHHHHHHHTSCCCCCSSTTGG
T ss_pred             CCEEEEEC-cCHHHHHHHHHHH-HCCCEEEEEECCCcEEECCCCCCHHHHHHHHHhhCCccccccccccCceEeCCchhh
Confidence            37899999 6999999998887 5699999999962     445555555433212221            112144666


Q ss_pred             HhcccccCCccEEEEccCchhH-HHHHHHHHHcCCcEEEeCC--CCCHHHHHHHHHHhhhcCeEEc
Q 031216           98 LGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMVST  160 (163)
Q Consensus        98 l~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigtt--g~~~e~~~~L~~~A~~~~Vv~t  160 (163)
                      +.     .++|+++-+..++.. .+++.   +-+..+|+|-.  .++++..+    .-++.+|++.
T Consensus       288 ~~-----~~~Dil~P~A~~~~I~~~~a~---~l~ak~V~EgAN~p~t~~a~~----~l~~~Gi~~~  341 (421)
T 1v9l_A          288 FK-----LDVDIFVPAAIENVIRGDNAG---LVKARLVVEGANGPTTPEAER----ILYERGVVVV  341 (421)
T ss_dssp             GG-----CCCSEEEECSCSSCBCTTTTT---TCCCSEEECCSSSCBCHHHHH----HHHTTTCEEE
T ss_pred             hc-----CCccEEEecCcCCccchhhHH---HcCceEEEecCCCcCCHHHHH----HHHHCCCEEe
Confidence            75     599999987765544 23333   33889998776  45655433    3345567664

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=96.55  E-value=0.0031  Score=53.66  Aligned_cols=110  Identities=8%  Similarity=0.124  Sum_probs=66.3

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEc
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDf  113 (163)
                      .-.+|+|+| .|+||+.+++.+. ..+++++ +.|++.  .++.++..   ..+.. +-+.++++.     .++|+++-+
T Consensus       172 ~GktV~V~G-~G~VG~~~A~~L~-~~GakVv-v~D~~~--~~l~~~a~---~~ga~-~v~~~~ll~-----~~~DIvip~  237 (364)
T 1leh_A          172 EGLAVSVQG-LGNVAKALCKKLN-TEGAKLV-VTDVNK--AAVSAAVA---EEGAD-AVAPNAIYG-----VTCDIFAPC  237 (364)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHH-HTTCEEE-EECSCH--HHHHHHHH---HHCCE-ECCGGGTTT-----CCCSEEEEC
T ss_pred             CcCEEEEEC-chHHHHHHHHHHH-HCCCEEE-EEcCCH--HHHHHHHH---HcCCE-EEChHHHhc-----cCCcEeecc
Confidence            347899999 6999999999987 5689988 888642  12222221   11222 235566665     489999866


Q ss_pred             cCchhH-HHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeEEcC
Q 031216          114 TDASTV-YDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVSTG  161 (163)
Q Consensus       114 T~p~~~-~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv~tg  161 (163)
                      ...+.. .+.+.   .-|..+|++.+.... ..++..++.++.+|++.+
T Consensus       238 a~~~~I~~~~~~---~lg~~iV~e~An~p~-t~~ea~~~L~~~Gi~~~P  282 (364)
T 1leh_A          238 ALGAVLNDFTIP---QLKAKVIAGSADNQL-KDPRHGKYLHELGIVYAP  282 (364)
T ss_dssp             SCSCCBSTTHHH---HCCCSEECCSCSCCB-SSHHHHHHHHHHTCEECC
T ss_pred             chHHHhCHHHHH---hCCCcEEEeCCCCCc-ccHHHHHHHHhCCCEEec
Confidence            544433 23333   237888887773321 111244556667777654

>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A*

Probab=96.54  E-value=0.012  Score=47.50  Aligned_cols=33  Identities=21%  Similarity=0.275  Sum_probs=27.8

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid   68 (163)
                      +++|.|+|++|.+|+.+++.+.+ .+.+++++..
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~-~g~~V~~~~r   34 (348)
T 1ek6_A            2 AEKVLVTGGAGYIGSHTVLELLE-AGYLPVVIDN   34 (348)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHH-TTCCEEEEEC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHH-CCCEEEEEec
Confidence            36899999999999999999885 5788887643

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=96.53  E-value=0.0082  Score=49.87  Aligned_cols=74  Identities=16%  Similarity=0.103  Sum_probs=43.1

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCC-cEEEEEEecCCCCcchhhhccCCCCCCcce---eCCHHHHHhcccccCCccE
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARG-MEVAGAIDSHSVGEDIGMVCDMEQPLEIPV---MSDLTMVLGSISQSKARAV  109 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~-~eLvgvid~~~~g~~~~~l~g~~~~~gi~v---~~~l~ell~~~~~~~~~DV  109 (163)
                      +++||+|+||+|.+|..++..+....- .+|+. +|.......+.++.....+..+..   ++|+++++.      .+|+
T Consensus         7 ~~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l-~Di~~~~~~~~dL~~~~~~~~v~~~~~t~d~~~al~------gaDv   79 (326)
T 1smk_A            7 PGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHL-YDVVNAPGVTADISHMDTGAVVRGFLGQQQLEAALT------GMDL   79 (326)
T ss_dssp             -CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEE-EESSSHHHHHHHHHTSCSSCEEEEEESHHHHHHHHT------TCSE
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhCCCCCEEEE-EeCCCcHhHHHHhhcccccceEEEEeCCCCHHHHcC------CCCE
Confidence            468999999889999999988875421 46654 784321001112221100112222   236777774      8999


Q ss_pred             EEEcc
Q 031216          110 VIDFT  114 (163)
Q Consensus       110 VIDfT  114 (163)
                      ||...
T Consensus        80 Vi~~a   84 (326)
T 1smk_A           80 IIVPA   84 (326)
T ss_dssp             EEECC
T ss_pred             EEEcC
Confidence            99654

>2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase; oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus}

Probab=96.52  E-value=0.0024  Score=55.50  Aligned_cols=112  Identities=13%  Similarity=0.137  Sum_probs=62.6

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC----------CCCcchhhhccCCCCCC-cc-----eeCCHHHHH
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH----------SVGEDIGMVCDMEQPLE-IP-----VMSDLTMVL   98 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~----------~~g~~~~~l~g~~~~~g-i~-----v~~~l~ell   98 (163)
                      ..||+|.| .|++|+..++.+. ..+.+++++.|+.          ..|.|+.++.......+ +.     -+-+.++++
T Consensus       212 g~~vaVqG-~GnVG~~~a~~L~-~~GakvVavsD~~~~~~~G~i~d~~Gld~~~l~~~~~~~g~i~~~~~a~~i~~~~~~  289 (421)
T 2yfq_A          212 DAKIAVQG-FGNVGTFTVKNIE-RQGGKVCAIAEWDRNEGNYALYNENGIDFKELLAYKEANKTLIGFPGAERITDEEFW  289 (421)
T ss_dssp             GSCEEEEC-CSHHHHHHHHHHH-HTTCCEEECCBCCSSSCSBCCBCSSCCCHHHHHHHHHHHCC----------------
T ss_pred             CCEEEEEC-cCHHHHHHHHHHH-HCCCEEEEEEecCCCccceEEECCCCCCHHHHHHHHHhcCCcccCCCceEeCccchh
Confidence            47899999 7999999999887 5789999999965          23444443322110000 00     011335556


Q ss_pred             hcccccCCccEEEEccCchhH-HHHHHHHHHcCCcEEEeCC--CCCHHHHHHHHHHhhhcCeEEc
Q 031216           99 GSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMVST  160 (163)
Q Consensus        99 ~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigtt--g~~~e~~~~L~~~A~~~~Vv~t  160 (163)
                      .     .++|+++-++.++.. .+.+..   -+..+|++..  .++++..+.|.    +.+|++.
T Consensus       290 ~-----~~~DIliP~A~~n~i~~~~A~~---l~ak~VvEgAN~P~t~ea~~il~----~~GI~~~  342 (421)
T 2yfq_A          290 T-----KEYDIIVPAALENVITGERAKT---INAKLVCEAANGPTTPEGDKVLT----ERGINLT  342 (421)
T ss_dssp             ----------CEEECSCSSCSCHHHHTT---CCCSEEECCSSSCSCHHHHHHHH----HHTCEEE
T ss_pred             c-----CCccEEEEcCCcCcCCcccHHH---cCCeEEEeCCccccCHHHHHHHH----HCCCEEE
Confidence            5     589999988876554 445543   3778887665  45665444443    5677664

>2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii}

Probab=96.52  E-value=0.0078  Score=46.89  Aligned_cols=86  Identities=19%  Similarity=0.247  Sum_probs=51.8

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEccC
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT~  115 (163)
                      +||.|+|++|.+|+.+++.+.+  +.+++++..+... . .+ +     ..++.-.++++++++.    .++|+||.+..
T Consensus         1 m~ilVtGatG~iG~~l~~~L~~--g~~V~~~~r~~~~-~-~~-~-----~~Dl~~~~~~~~~~~~----~~~d~vi~~a~   66 (273)
T 2ggs_A            1 MRTLITGASGQLGIELSRLLSE--RHEVIKVYNSSEI-Q-GG-Y-----KLDLTDFPRLEDFIIK----KRPDVIINAAA   66 (273)
T ss_dssp             CCEEEETTTSHHHHHHHHHHTT--TSCEEEEESSSCC-T-TC-E-----ECCTTSHHHHHHHHHH----HCCSEEEECCC
T ss_pred             CEEEEECCCChhHHHHHHHHhc--CCeEEEecCCCcC-C-CC-c-----eeccCCHHHHHHHHHh----cCCCEEEECCc
Confidence            4799999999999999999973  6888865443211 0 00 1     1111111344555542    25999998763


Q ss_pred             ch------------------hHHHHHHHHHHcCCcEEE
Q 031216          116 AS------------------TVYDNVKQATAFGMRSVV  135 (163)
Q Consensus       116 p~------------------~~~~~~~~al~~G~~vVi  135 (163)
                      ..                  .....++.+.+.|.++|.
T Consensus        67 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~iv~  104 (273)
T 2ggs_A           67 MTDVDKCEIEKEKAYKINAEAVRHIVRAGKVIDSYIVH  104 (273)
T ss_dssp             CCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCEEEE
T ss_pred             ccChhhhhhCHHHHHHHhHHHHHHHHHHHHHhCCeEEE
Confidence            21                  123455667777777663

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=96.52  E-value=0.0045  Score=50.77  Aligned_cols=111  Identities=14%  Similarity=0.155  Sum_probs=63.1

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccC--CC----CC---CcceeCCHHHHHhcccccC
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDM--EQ----PL---EIPVMSDLTMVLGSISQSK  105 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~--~~----~~---gi~v~~~l~ell~~~~~~~  105 (163)
                      ++||+|+| .|.||..++..+.+ .+.++.. +++... ..+.+ .|+  ..    ..   .+.++++++++.      .
T Consensus         2 ~mkI~IiG-aGaiG~~~a~~L~~-~g~~V~~-~~r~~~-~~i~~-~Gl~~~~~~~g~~~~~~~~~~~~~~~~~------~   70 (320)
T 3i83_A            2 SLNILVIG-TGAIGSFYGALLAK-TGHCVSV-VSRSDY-ETVKA-KGIRIRSATLGDYTFRPAAVVRSAAELE------T   70 (320)
T ss_dssp             -CEEEEES-CCHHHHHHHHHHHH-TTCEEEE-ECSTTH-HHHHH-HCEEEEETTTCCEEECCSCEESCGGGCS------S
T ss_pred             CCEEEEEC-cCHHHHHHHHHHHh-CCCeEEE-EeCChH-HHHHh-CCcEEeecCCCcEEEeeeeeECCHHHcC------C
Confidence            47999999 59999999999875 5777764 454321 11111 010  00    00   234567777654      3


Q ss_pred             CccEEEEccCchhHHHH---HHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeE
Q 031216          106 ARAVVIDFTDASTVYDN---VKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMV  158 (163)
Q Consensus       106 ~~DVVIDfT~p~~~~~~---~~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv  158 (163)
                      ++|+||-++.+....+.   +...+..+..+|.-.-|+..+  +.|.+.-....|+
T Consensus        71 ~~DlVilavK~~~~~~~l~~l~~~l~~~t~Iv~~~nGi~~~--~~l~~~~~~~~vl  124 (320)
T 3i83_A           71 KPDCTLLCIKVVEGADRVGLLRDAVAPDTGIVLISNGIDIE--PEVAAAFPDNEVI  124 (320)
T ss_dssp             CCSEEEECCCCCTTCCHHHHHTTSCCTTCEEEEECSSSSCS--HHHHHHSTTSCEE
T ss_pred             CCCEEEEecCCCChHHHHHHHHhhcCCCCEEEEeCCCCChH--HHHHHHCCCCcEE
Confidence            89999966655444333   333344566777767788633  3344444333443

>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens}

Probab=96.48  E-value=0.0057  Score=48.02  Aligned_cols=33  Identities=18%  Similarity=0.116  Sum_probs=27.1

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid   68 (163)
                      |.+|.|+|++|.+|+.+++.+.+ .+.+++++..
T Consensus         2 ~~~ilVtGatG~iG~~l~~~L~~-~g~~V~~~~r   34 (267)
T 3ay3_A            2 LNRLLVTGAAGGVGSAIRPHLGT-LAHEVRLSDI   34 (267)
T ss_dssp             EEEEEEESTTSHHHHHHGGGGGG-TEEEEEECCS
T ss_pred             CceEEEECCCCHHHHHHHHHHHh-CCCEEEEEeC
Confidence            46899999999999999999875 4788776543

>2bma_A Glutamate dehydrogenase (NADP+); malaria, drug design, analysis, oligomer organization, oxidoreductase; 2.7A {Plasmodium falciparum}

Probab=96.48  E-value=0.012  Score=51.90  Aligned_cols=114  Identities=11%  Similarity=0.129  Sum_probs=76.6

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec-----CCCCc---chhhhccCCCC------------CCcceeCCH
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-----HSVGE---DIGMVCDMEQP------------LEIPVMSDL   94 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~-----~~~g~---~~~~l~g~~~~------------~gi~v~~~l   94 (163)
                      ..||+|-| .|++|+..++.+. ..+.+++++.|+     .+.|-   ++..+......            .+.... +.
T Consensus       252 g~~vaVqG-~GnVG~~~a~~L~-~~GakvVavsD~~G~i~dp~Gid~edl~~l~~~k~~~~g~v~~~~~~~~~a~~v-~~  328 (470)
T 2bma_A          252 KQTAVVSG-SGNVALYCVQKLL-HLNVKVLTLSDSNGYVYEPNGFTHENLEFLIDLKEEKKGRIKEYLNHSSTAKYF-PN  328 (470)
T ss_dssp             GCEEEEEC-SSHHHHHHHHHHH-HTTCEECEEEETTEEEECSSCCCHHHHHHHHHHHTTTTCCGGGGGGTCSSCEEC-SS
T ss_pred             CCEEEEEC-CcHHHHHHHHHHH-HCCCEEEEEEeCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHHhhcCCcEEe-cC
Confidence            47899999 7999999999887 469999999995     24565   33222211000            022222 22


Q ss_pred             HHHHhcccccCCccEEEEccCchhH-HHHHHHHHHcCCcEEEeCC--CCCHHHHHHHHHHhhhcCeEEc
Q 031216           95 TMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMVST  160 (163)
Q Consensus        95 ~ell~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigtt--g~~~e~~~~L~~~A~~~~Vv~t  160 (163)
                      ++++.     .++|+++-+..+... .+++...++.+..+|+|-.  .++++..    +.-++.+|++.
T Consensus       329 ~~~~~-----~~~DI~iPcA~~~~I~~~na~~l~~~~ak~V~EgAN~p~T~eA~----~~L~~rGIl~~  388 (470)
T 2bma_A          329 EKPWG-----VPCTLAFPCATQNDVDLDQAKLLQKNGCILVGEGANMPSTVDAI----NLFKSNNIIYC  388 (470)
T ss_dssp             CCTTS-----SCCSEEEECSSTTCBCSHHHHHHHHTTCCEEECCSSSCBCHHHH----HHHHHTTCEEE
T ss_pred             cCeee-----cCccEEEeccccCcCCHHHHHHHHhcCcEEEEeCCCCCCCHHHH----HHHHHCCcEEE
Confidence            45554     599999988876665 6788888889999999876  3566653    34455677765

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=96.48  E-value=0.0081  Score=49.50  Aligned_cols=32  Identities=16%  Similarity=0.239  Sum_probs=27.3

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCc-EEEEEE
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGM-EVAGAI   67 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~-eLvgvi   67 (163)
                      .+|.|+|++|.+|+.+++.+.+.++. +++++.
T Consensus        22 k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~   54 (344)
T 2gn4_A           22 QTILITGGTGSFGKCFVRKVLDTTNAKKIIVYS   54 (344)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEE
Confidence            68999999999999999999876466 877654

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=96.47  E-value=0.0044  Score=50.41  Aligned_cols=86  Identities=16%  Similarity=0.145  Sum_probs=52.6

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcce--eCCHHHHHhcccccCCccEEE
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV--MSDLTMVLGSISQSKARAVVI  111 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v--~~~l~ell~~~~~~~~~DVVI  111 (163)
                      ...+|+|+| .|+||+.+++.+.. -++++. ++|+..  .+...+.    ..++..  +.++++++.      .+|+|+
T Consensus       154 ~g~~v~IiG-~G~iG~~~a~~l~~-~G~~V~-~~dr~~--~~~~~~~----~~g~~~~~~~~l~~~l~------~aDvVi  218 (293)
T 3d4o_A          154 HGANVAVLG-LGRVGMSVARKFAA-LGAKVK-VGARES--DLLARIA----EMGMEPFHISKAAQELR------DVDVCI  218 (293)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHH-TTCEEE-EEESSH--HHHHHHH----HTTSEEEEGGGHHHHTT------TCSEEE
T ss_pred             CCCEEEEEe-eCHHHHHHHHHHHh-CCCEEE-EEECCH--HHHHHHH----HCCCeecChhhHHHHhc------CCCEEE
Confidence            347899999 69999999999874 577766 566532  1111111    123322  357888774      899999


Q ss_pred             EccCchhHHHHHHHHHHcCCcEE
Q 031216          112 DFTDASTVYDNVKQATAFGMRSV  134 (163)
Q Consensus       112 DfT~p~~~~~~~~~al~~G~~vV  134 (163)
                      ..+.+....+.....++.|.-+|
T Consensus       219 ~~~p~~~i~~~~l~~mk~~~~li  241 (293)
T 3d4o_A          219 NTIPALVVTANVLAEMPSHTFVI  241 (293)
T ss_dssp             ECCSSCCBCHHHHHHSCTTCEEE
T ss_pred             ECCChHHhCHHHHHhcCCCCEEE
Confidence            77754333233334455555444

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=96.46  E-value=0.0077  Score=49.69  Aligned_cols=96  Identities=16%  Similarity=0.216  Sum_probs=54.4

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhcc-CCC--CCCcceeCCHHHHHhcccccCCccEEEE
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCD-MEQ--PLEIPVMSDLTMVLGSISQSKARAVVID  112 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g-~~~--~~gi~v~~~l~ell~~~~~~~~~DVVID  112 (163)
                      .||+|+| .|.||..++..+.  .+++++ ++|++..  .+..... +..  -.++...+|+++ +.      ++|+||.
T Consensus        13 ~~V~vIG-~G~MG~~iA~~la--aG~~V~-v~d~~~~--~~~~~~~~l~~~~~~~i~~~~~~~~-~~------~aDlVie   79 (293)
T 1zej_A           13 MKVFVIG-AGLMGRGIAIAIA--SKHEVV-LQDVSEK--ALEAAREQIPEELLSKIEFTTTLEK-VK------DCDIVME   79 (293)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHH--TTSEEE-EECSCHH--HHHHHHHHSCGGGGGGEEEESSCTT-GG------GCSEEEE
T ss_pred             CeEEEEe-eCHHHHHHHHHHH--cCCEEE-EEECCHH--HHHHHHHHHHHHHhCCeEEeCCHHH-Hc------CCCEEEE
Confidence            6899999 6999999999987  699876 5675421  1111110 000  014556678876 43      8999996


Q ss_pred             ccCchhH--HHHH-HHHHH-cCCcEEEeCCCCCHHHH
Q 031216          113 FTDASTV--YDNV-KQATA-FGMRSVVYVPHIQLETV  145 (163)
Q Consensus       113 fT~p~~~--~~~~-~~al~-~G~~vVigttg~~~e~~  145 (163)
                      +. |+..  ...+ ..... .|.-+++-|+.++..+.
T Consensus        80 av-pe~~~vk~~l~~~l~~~~~~IlasntSti~~~~~  115 (293)
T 1zej_A           80 AV-FEDLNTKVEVLREVERLTNAPLCSNTSVISVDDI  115 (293)
T ss_dssp             CC-CSCHHHHHHHHHHHHTTCCSCEEECCSSSCHHHH
T ss_pred             cC-cCCHHHHHHHHHHHhcCCCCEEEEECCCcCHHHH
Confidence            55 3332  2222 22111 34433344556776543

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=96.45  E-value=0.0051  Score=52.92  Aligned_cols=67  Identities=15%  Similarity=0.091  Sum_probs=45.7

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEc
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDf  113 (163)
                      ...+|+|+| .|+||+.+++.+.. -++++. ++|+.....+...      ..++..+.++++++.      ..|+|+..
T Consensus       190 ~gktvGIIG-lG~IG~~vA~~l~a-~G~~V~-~~d~~~~~~~~~~------~~G~~~~~~l~ell~------~aDvV~l~  254 (393)
T 2nac_A          190 EAMHVGTVA-AGRIGLAVLRRLAP-FDVHLH-YTDRHRLPESVEK------ELNLTWHATREDMYP------VCDVVTLN  254 (393)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHGG-GTCEEE-EECSSCCCHHHHH------HHTCEECSSHHHHGG------GCSEEEEC
T ss_pred             CCCEEEEEe-ECHHHHHHHHHHHh-CCCEEE-EEcCCccchhhHh------hcCceecCCHHHHHh------cCCEEEEe
Confidence            346899999 79999999999874 578876 4565321111111      224444568999885      89999966


Q ss_pred             cC
Q 031216          114 TD  115 (163)
Q Consensus       114 T~  115 (163)
                      ..
T Consensus       255 ~P  256 (393)
T 2nac_A          255 CP  256 (393)
T ss_dssp             SC
T ss_pred             cC
Confidence            53

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=96.45  E-value=0.011  Score=47.02  Aligned_cols=34  Identities=26%  Similarity=0.302  Sum_probs=28.4

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid   68 (163)
                      +++||.|+|++|.+|+.+++.+.+. +.+++++..
T Consensus         6 ~~~~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~r   39 (321)
T 3vps_A            6 LKHRILITGGAGFIGGHLARALVAS-GEEVTVLDD   39 (321)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHT-TCCEEEECC
T ss_pred             CCCeEEEECCCChHHHHHHHHHHHC-CCEEEEEec
Confidence            4679999999999999999999864 788887654

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=96.43  E-value=0.017  Score=40.37  Aligned_cols=96  Identities=14%  Similarity=0.247  Sum_probs=50.9

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcc-eeC---CHHHHHhcccccCCccEE
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP-VMS---DLTMVLGSISQSKARAVV  110 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~-v~~---~l~ell~~~~~~~~~DVV  110 (163)
                      .+||+|+|+ |++|+.+++.+.+ .+.+++ ++|++.  .....+..   ..++. +..   +.+.+...  .-.++|+|
T Consensus         4 ~m~i~IiG~-G~iG~~~a~~L~~-~g~~v~-~~d~~~--~~~~~~~~---~~~~~~~~~d~~~~~~l~~~--~~~~~d~v   73 (140)
T 1lss_A            4 GMYIIIAGI-GRVGYTLAKSLSE-KGHDIV-LIDIDK--DICKKASA---EIDALVINGDCTKIKTLEDA--GIEDADMY   73 (140)
T ss_dssp             -CEEEEECC-SHHHHHHHHHHHH-TTCEEE-EEESCH--HHHHHHHH---HCSSEEEESCTTSHHHHHHT--TTTTCSEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHh-CCCeEE-EEECCH--HHHHHHHH---hcCcEEEEcCCCCHHHHHHc--CcccCCEE
Confidence            369999995 9999999999875 578876 456432  11222210   11332 222   33332210  01479999


Q ss_pred             EEccCchhHHHH-HHHHHHcC-CcEEEeCCCC
Q 031216          111 IDFTDASTVYDN-VKQATAFG-MRSVVYVPHI  140 (163)
Q Consensus       111 IDfT~p~~~~~~-~~~al~~G-~~vVigttg~  140 (163)
                      |.++........ ...+.+.+ .++|+-+.+.
T Consensus        74 i~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~  105 (140)
T 1lss_A           74 IAVTGKEEVNLMSSLLAKSYGINKTIARISEI  105 (140)
T ss_dssp             EECCSCHHHHHHHHHHHHHTTCCCEEEECSST
T ss_pred             EEeeCCchHHHHHHHHHHHcCCCEEEEEecCH
Confidence            977654433332 23444445 3566544443

>3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG, oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A

Probab=96.42  E-value=0.011  Score=51.48  Aligned_cols=114  Identities=16%  Similarity=0.219  Sum_probs=74.7

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhhccCCCCCC-c----ceeCCHHHHHhcccc
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMVCDMEQPLE-I----PVMSDLTMVLGSISQ  103 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~-----~~g~~~~~l~g~~~~~g-i----~v~~~l~ell~~~~~  103 (163)
                      +..||+|.| .|++|+..++.+.+ .+.+++++.|+.     +.|-|..++.......+ +    .-+-+.++++.    
T Consensus       220 ~g~~vaVqG-~GnVG~~aa~~l~e-~GakVVavsD~~G~iyd~~GlD~~~l~~~~~~~g~i~~~~a~~~~~~~i~~----  293 (424)
T 3k92_A          220 QNARIIIQG-FGNAGSFLAKFMHD-AGAKVIGISDANGGLYNPDGLDIPYLLDKRDSFGMVTNLFTDVITNEELLE----  293 (424)
T ss_dssp             GGCEEEEEC-CSHHHHHHHHHHHH-HTCEEEEEECSSCEEECTTCCCHHHHHHHCCSSSCCGGGCSCCBCHHHHHH----
T ss_pred             ccCEEEEEC-CCHHHHHHHHHHHH-CCCEEEEEECCCCcEECCCCCCHHHHHHHHHHhCCCCCCCcEEecCcccee----
Confidence            347899999 69999999998874 599999999953     45666665543321222 1    11225578886    


Q ss_pred             cCCccEEEEccCchhH-HHHHHHHHHcCCcEEEeCC--CCCHHHHHHHHHHhhhcCeEEcC
Q 031216          104 SKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMVSTG  161 (163)
Q Consensus       104 ~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigtt--g~~~e~~~~L~~~A~~~~Vv~tg  161 (163)
                       .++|+++-++..... .+++..   -+..+|+|-.  .++++..+.    -++.+|++.+
T Consensus       294 -~~~DIliPcA~~n~I~~~~a~~---l~ak~V~EgAN~p~t~eA~~i----L~~rGI~~~P  346 (424)
T 3k92_A          294 -KDCDILVPAAISNQITAKNAHN---IQASIVVERANGPTTIDATKI----LNERGVLLVP  346 (424)
T ss_dssp             -SCCSEEEECSCSSCBCTTTGGG---CCCSEEECCSSSCBCHHHHHH----HHHTTCEEEC
T ss_pred             -ccccEEeecCcccccChhhHhh---cCceEEEcCCCCCCCHHHHHH----HHHCCCEEEC
Confidence             599999987754433 334432   2888888776  345554333    3556777753

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=96.42  E-value=0.0034  Score=51.17  Aligned_cols=86  Identities=10%  Similarity=0.099  Sum_probs=52.5

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcce--eCCHHHHHhcccccCCccEEE
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV--MSDLTMVLGSISQSKARAVVI  111 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v--~~~l~ell~~~~~~~~~DVVI  111 (163)
                      ...+|+|+| .|+||+.+++.+.. -++++. ++|+..  .+...+.    ..++..  +.++++++.      .+|+|+
T Consensus       156 ~g~~v~IiG-~G~iG~~~a~~l~~-~G~~V~-~~d~~~--~~~~~~~----~~g~~~~~~~~l~~~l~------~aDvVi  220 (300)
T 2rir_A          156 HGSQVAVLG-LGRTGMTIARTFAA-LGANVK-VGARSS--AHLARIT----EMGLVPFHTDELKEHVK------DIDICI  220 (300)
T ss_dssp             TTSEEEEEC-CSHHHHHHHHHHHH-TTCEEE-EEESSH--HHHHHHH----HTTCEEEEGGGHHHHST------TCSEEE
T ss_pred             CCCEEEEEc-ccHHHHHHHHHHHH-CCCEEE-EEECCH--HHHHHHH----HCCCeEEchhhHHHHhh------CCCEEE
Confidence            457899999 69999999999874 578866 466542  1112111    123322  367888774      899999


Q ss_pred             EccCchhHHHHHHHHHHcCCcEE
Q 031216          112 DFTDASTVYDNVKQATAFGMRSV  134 (163)
Q Consensus       112 DfT~p~~~~~~~~~al~~G~~vV  134 (163)
                      ..+.+....+.....++.|.-+|
T Consensus       221 ~~~p~~~i~~~~~~~mk~g~~li  243 (300)
T 2rir_A          221 NTIPSMILNQTVLSSMTPKTLIL  243 (300)
T ss_dssp             ECCSSCCBCHHHHTTSCTTCEEE
T ss_pred             ECCChhhhCHHHHHhCCCCCEEE
Confidence            77765433232333345554444

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=96.41  E-value=0.011  Score=48.29  Aligned_cols=110  Identities=11%  Similarity=0.090  Sum_probs=61.6

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCC--C---CC---CcceeCCHHHHHhcccccCC
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDME--Q---PL---EIPVMSDLTMVLGSISQSKA  106 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~--~---~~---gi~v~~~l~ell~~~~~~~~  106 (163)
                      ++||+|+| .|.||..++..+.+ .+.++.. +++... ..+.+ .|+.  .   ..   .+.++++++++       ..
T Consensus         2 ~mkI~IiG-aGaiG~~~a~~L~~-~g~~V~~-~~r~~~-~~i~~-~g~~~~~~~g~~~~~~~~~~~~~~~~-------~~   69 (312)
T 3hn2_A            2 SLRIAIVG-AGALGLYYGALLQR-SGEDVHF-LLRRDY-EAIAG-NGLKVFSINGDFTLPHVKGYRAPEEI-------GP   69 (312)
T ss_dssp             --CEEEEC-CSTTHHHHHHHHHH-TSCCEEE-ECSTTH-HHHHH-TCEEEEETTCCEEESCCCEESCHHHH-------CC
T ss_pred             CCEEEEEC-cCHHHHHHHHHHHH-CCCeEEE-EEcCcH-HHHHh-CCCEEEcCCCeEEEeeceeecCHHHc-------CC
Confidence            47999999 59999999999875 4667664 454321 11111 0110  0   00   23456777663       38


Q ss_pred             ccEEEEccCchhHHHHHHH---HHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeE
Q 031216          107 RAVVIDFTDASTVYDNVKQ---ATAFGMRSVVYVPHIQLETVSALSAFCDKASMV  158 (163)
Q Consensus       107 ~DVVIDfT~p~~~~~~~~~---al~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv  158 (163)
                      +|+||-++.+....+.+..   .+..+..+|+-.-|++.+  +.|.+...+..|+
T Consensus        70 ~D~vilavk~~~~~~~l~~l~~~l~~~~~iv~l~nGi~~~--~~l~~~~~~~~v~  122 (312)
T 3hn2_A           70 MDLVLVGLKTFANSRYEELIRPLVEEGTQILTLQNGLGNE--EALATLFGAERII  122 (312)
T ss_dssp             CSEEEECCCGGGGGGHHHHHGGGCCTTCEEEECCSSSSHH--HHHHHHTCGGGEE
T ss_pred             CCEEEEecCCCCcHHHHHHHHhhcCCCCEEEEecCCCCcH--HHHHHHCCCCcEE
Confidence            9999966666555444433   344566677766688643  3455544333443

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=96.40  E-value=0.0087  Score=52.50  Aligned_cols=37  Identities=22%  Similarity=0.230  Sum_probs=29.2

Q ss_pred             CCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 031216           31 PPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (163)
Q Consensus        31 ~~~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~   70 (163)
                      ++..+.||+|+| .|.||..++..+. ..+++++ ++|++
T Consensus        50 ~~~~i~kVaVIG-aG~MG~~IA~~la-~aG~~V~-l~D~~   86 (460)
T 3k6j_A           50 EAYDVNSVAIIG-GGTMGKAMAICFG-LAGIETF-LVVRN   86 (460)
T ss_dssp             CCCCCCEEEEEC-CSHHHHHHHHHHH-HTTCEEE-EECSC
T ss_pred             CcccCCEEEEEC-CCHHHHHHHHHHH-HCCCeEE-EEECc
Confidence            344567999999 5999999999887 5689887 46754

>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*

Probab=96.40  E-value=0.01  Score=46.90  Aligned_cols=32  Identities=16%  Similarity=0.167  Sum_probs=26.4

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvi   67 (163)
                      |.+|.|+|++|.+|+.+++.+.+ .+.+++...
T Consensus         3 ~k~vlVTGasg~IG~~la~~L~~-~G~~V~~~~   34 (267)
T 3rft_A            3 MKRLLVTGAAGQLGRVMRERLAP-MAEILRLAD   34 (267)
T ss_dssp             EEEEEEESTTSHHHHHHHHHTGG-GEEEEEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHh-cCCEEEEEe
Confidence            46799999999999999999875 577777543

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=96.39  E-value=0.0068  Score=50.68  Aligned_cols=82  Identities=16%  Similarity=0.249  Sum_probs=50.5

Q ss_pred             ccccccceeeeccCCCCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHH
Q 031216           16 SQNVKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLT   95 (163)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~   95 (163)
                      .++++..+|-.......-.-.+|+|+| .|+||+.+++.+. .-|+++.+ +|+...  ....+     . ....+.+++
T Consensus       118 ~~~~~~~~W~~~~~~~~l~gktvGIiG-lG~IG~~vA~~l~-~~G~~V~~-~dr~~~--~~~~~-----~-~~~~~~~l~  186 (324)
T 3evt_A          118 LNQRGARQWALPMTTSTLTGQQLLIYG-TGQIGQSLAAKAS-ALGMHVIG-VNTTGH--PADHF-----H-ETVAFTATA  186 (324)
T ss_dssp             HHHTTTCCSSCSSCCCCSTTCEEEEEC-CSHHHHHHHHHHH-HTTCEEEE-EESSCC--CCTTC-----S-EEEEGGGCH
T ss_pred             HHHHhcCCcccCCCCccccCCeEEEEC-cCHHHHHHHHHHH-hCCCEEEE-ECCCcc--hhHhH-----h-hccccCCHH
Confidence            344555555322112222347899999 7999999999987 45899886 564321  11111     0 112246889


Q ss_pred             HHHhcccccCCccEEEEcc
Q 031216           96 MVLGSISQSKARAVVIDFT  114 (163)
Q Consensus        96 ell~~~~~~~~~DVVIDfT  114 (163)
                      +++.      ..|+|+...
T Consensus       187 ell~------~aDvV~l~l  199 (324)
T 3evt_A          187 DALA------TANFIVNAL  199 (324)
T ss_dssp             HHHH------HCSEEEECC
T ss_pred             HHHh------hCCEEEEcC
Confidence            9886      899998554

>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A*

Probab=96.39  E-value=0.0095  Score=47.52  Aligned_cols=69  Identities=10%  Similarity=0.160  Sum_probs=41.4

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhc-CCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc
Q 031216           37 KVIINGAVKEIGRAAVIAVTKA-RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (163)
Q Consensus        37 rV~VvGa~G~mG~~i~~~i~~~-~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT  114 (163)
                      ||.|+|++|.+|+.+++.+.+. .+.+++++..+....... .+.    ..++.-.+++++++..    .++|+||.+.
T Consensus         1 ~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~-~~~----~~D~~d~~~~~~~~~~----~~~d~vih~a   70 (317)
T 3ajr_A            1 MILVTGSSGQIGTELVPYLAEKYGKKNVIASDIVQRDTGGI-KFI----TLDVSNRDEIDRAVEK----YSIDAIFHLA   70 (317)
T ss_dssp             CEEEESTTSTTHHHHHHHHHHHHCGGGEEEEESSCCCCTTC-CEE----ECCTTCHHHHHHHHHH----TTCCEEEECC
T ss_pred             CEEEEcCCcHHHHHHHHHHHHhcCCCEEEEecCCCccccCc-eEE----EecCCCHHHHHHHHhh----cCCcEEEECC
Confidence            6899999999999999999876 467887654332110000 000    0111111234455542    3799999876

>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua}

Probab=96.38  E-value=0.006  Score=45.79  Aligned_cols=64  Identities=19%  Similarity=0.291  Sum_probs=41.4

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT  114 (163)
                      ++||.|+|++|.+|+.+++.+.  .+.+++.+ ++...      ..    ..++.-.++++++++..   .++|+||...
T Consensus         3 kM~vlVtGasg~iG~~~~~~l~--~g~~V~~~-~r~~~------~~----~~D~~~~~~~~~~~~~~---~~~d~vi~~a   66 (202)
T 3d7l_A            3 AMKILLIGASGTLGSAVKERLE--KKAEVITA-GRHSG------DV----TVDITNIDSIKKMYEQV---GKVDAIVSAT   66 (202)
T ss_dssp             SCEEEEETTTSHHHHHHHHHHT--TTSEEEEE-ESSSS------SE----ECCTTCHHHHHHHHHHH---CCEEEEEECC
T ss_pred             CcEEEEEcCCcHHHHHHHHHHH--CCCeEEEE-ecCcc------ce----eeecCCHHHHHHHHHHh---CCCCEEEECC
Confidence            4689999999999999999987  58998765 43221      00    11121123455555421   2689999864

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1

Probab=96.35  E-value=0.01  Score=49.55  Aligned_cols=103  Identities=14%  Similarity=0.046  Sum_probs=61.0

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT  114 (163)
                      ..+|+|+| .|+||+.+++.+. .-|+++. ++|+.... ...       .. + -+.++++++.      ..|+|+...
T Consensus       145 g~~vgIiG-~G~IG~~~A~~l~-~~G~~V~-~~d~~~~~-~~~-------~~-~-~~~~l~ell~------~aDvV~~~~  205 (333)
T 1dxy_A          145 QQTVGVMG-TGHIGQVAIKLFK-GFGAKVI-AYDPYPMK-GDH-------PD-F-DYVSLEDLFK------QSDVIDLHV  205 (333)
T ss_dssp             GSEEEEEC-CSHHHHHHHHHHH-HTTCEEE-EECSSCCS-SCC-------TT-C-EECCHHHHHH------HCSEEEECC
T ss_pred             CCEEEEEC-cCHHHHHHHHHHH-HCCCEEE-EECCCcch-hhH-------hc-c-ccCCHHHHHh------cCCEEEEcC
Confidence            47899999 7999999999987 4589976 46653211 110       11 2 2458999885      899999665


Q ss_pred             Cchh-H----HHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCe
Q 031216          115 DAST-V----YDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASM  157 (163)
Q Consensus       115 ~p~~-~----~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~V  157 (163)
                      +... .    .+.....++.|.-+|--.+|-- .+.+.|.++.++..+
T Consensus       206 P~~~~t~~li~~~~l~~mk~ga~lIn~srg~~-vd~~aL~~aL~~g~i  252 (333)
T 1dxy_A          206 PGIEQNTHIINEAAFNLMKPGAIVINTARPNL-IDTQAMLSNLKSGKL  252 (333)
T ss_dssp             CCCGGGTTSBCHHHHHHSCTTEEEEECSCTTS-BCHHHHHHHHHTTSE
T ss_pred             CCchhHHHHhCHHHHhhCCCCcEEEECCCCcc-cCHHHHHHHHHhCCc
Confidence            3221 1    1233445566655554333421 222456665555444

>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A*

Probab=96.35  E-value=0.018  Score=47.39  Aligned_cols=33  Identities=21%  Similarity=0.250  Sum_probs=27.5

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid   68 (163)
                      |+|.|+|++|.+|+.+++.+.+..+.+++++..
T Consensus         3 m~vlVTGatG~iG~~l~~~L~~~~g~~V~~~~r   35 (397)
T 1gy8_A            3 MRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDS   35 (397)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCCCEEEEEEC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHhCCCEEEEEec
Confidence            589999999999999999987345788887543

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=96.27  E-value=0.0027  Score=53.73  Aligned_cols=64  Identities=14%  Similarity=0.013  Sum_probs=45.2

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT  114 (163)
                      -.+|||+| .|+||+.+++.+.. -|+++.+ +|+..  . .....    ..++...+++++++.      ..|+|+...
T Consensus       160 g~tvGIIG-lG~IG~~vA~~l~~-~G~~V~~-~d~~~--~-~~~~~----~~g~~~~~~l~ell~------~aDiV~l~~  223 (352)
T 3gg9_A          160 GQTLGIFG-YGKIGQLVAGYGRA-FGMNVLV-WGREN--S-KERAR----ADGFAVAESKDALFE------QSDVLSVHL  223 (352)
T ss_dssp             TCEEEEEC-CSHHHHHHHHHHHH-TTCEEEE-ECSHH--H-HHHHH----HTTCEECSSHHHHHH------HCSEEEECC
T ss_pred             CCEEEEEe-ECHHHHHHHHHHHh-CCCEEEE-ECCCC--C-HHHHH----hcCceEeCCHHHHHh------hCCEEEEec
Confidence            47899999 79999999999874 5899875 56431  1 11111    234555579999986      799988654

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=96.26  E-value=0.006  Score=51.02  Aligned_cols=65  Identities=12%  Similarity=0.127  Sum_probs=44.1

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEc
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDf  113 (163)
                      ...+|+|+| .|+||+.+++.+. .-|+++.+ +|+.....+...      ..++. +.++++++.      ..|+|+..
T Consensus       144 ~g~tvGIIG-~G~IG~~vA~~l~-~~G~~V~~-~d~~~~~~~~~~------~~g~~-~~~l~ell~------~aDvV~l~  207 (330)
T 4e5n_A          144 DNATVGFLG-MGAIGLAMADRLQ-GWGATLQY-HEAKALDTQTEQ------RLGLR-QVACSELFA------SSDFILLA  207 (330)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHTT-TSCCEEEE-ECSSCCCHHHHH------HHTEE-ECCHHHHHH------HCSEEEEC
T ss_pred             CCCEEEEEe-eCHHHHHHHHHHH-HCCCEEEE-ECCCCCcHhHHH------hcCce-eCCHHHHHh------hCCEEEEc
Confidence            347999999 7999999999976 56899774 565421111111      12332 458999986      79998855


Q ss_pred             c
Q 031216          114 T  114 (163)
Q Consensus       114 T  114 (163)
                      .
T Consensus       208 ~  208 (330)
T 4e5n_A          208 L  208 (330)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus}

Probab=96.25  E-value=0.011  Score=51.44  Aligned_cols=113  Identities=19%  Similarity=0.241  Sum_probs=72.2

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec-----CCCCcchhhhccCCCCCC-cce-eCCHHHHHhcccccCC
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-----HSVGEDIGMVCDMEQPLE-IPV-MSDLTMVLGSISQSKA  106 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~-----~~~g~~~~~l~g~~~~~g-i~v-~~~l~ell~~~~~~~~  106 (163)
                      +..||+|.| .|++|+..++.+. ..+.+++++.|+     ...|.|..++.......+ +.- .-+.++++.     .+
T Consensus       217 ~gk~vaVqG-~GnVG~~~a~~L~-~~GakVVavsD~~G~i~dp~Gld~~~l~~~~~~~g~v~~~~~~~~e~~~-----~~  289 (419)
T 3aoe_E          217 RGARVVVQG-LGQVGAAVALHAE-RLGMRVVAVATSMGGMYAPEGLDVAEVLSAYEATGSLPRLDLAPEEVFG-----LE  289 (419)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHH-HTTCEEEEEEETTEEEECTTCCCHHHHHHHHHHHSSCSCCCBCTTTGGG-----SS
T ss_pred             cCCEEEEEC-cCHHHHHHHHHHH-HCCCEEEEEEcCCCeEECCCCCCHHHHHHHHHhhCCcceeeccchhhhc-----cC
Confidence            347899999 7999999999887 569999999996     245655544432210111 110 012345565     59


Q ss_pred             ccEEEEccCchhH-HHHHHHHHHcCCcEEEeCC--CCCHHHHHHHHHHhhhcCeEEc
Q 031216          107 RAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMVST  160 (163)
Q Consensus       107 ~DVVIDfT~p~~~-~~~~~~al~~G~~vVigtt--g~~~e~~~~L~~~A~~~~Vv~t  160 (163)
                      +|+++-++.++.. .+++.   +-+..+|+|-.  .++++..+.|    ++.+|++.
T Consensus       290 ~DVliP~A~~n~i~~~~A~---~l~ak~V~EgAN~p~t~~A~~~L----~~~Gi~~~  339 (419)
T 3aoe_E          290 AEVLVLAAREGALDGDRAR---QVQAQAVVEVANFGLNPEAEAYL----LGKGALVV  339 (419)
T ss_dssp             CSEEEECSCTTCBCHHHHT---TCCCSEEEECSTTCBCHHHHHHH----HHHTCEEE
T ss_pred             ceEEEecccccccccchHh---hCCceEEEECCCCcCCHHHHHHH----HHCCCEEE
Confidence            9999988876655 44444   33889999876  3565544443    44567664

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=96.24  E-value=0.013  Score=49.11  Aligned_cols=86  Identities=13%  Similarity=0.156  Sum_probs=52.5

Q ss_pred             cccccccccceeeecc-CCCCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCccee
Q 031216           13 HHISQNVKAKRFISCS-TNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM   91 (163)
Q Consensus        13 ~~~~~~~~~~~~~~~~-~~~~~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~   91 (163)
                      +...++++..+|-.-. ....-...+|+|+| .|+||+.+++.+. .-++++. ++|+... .....      ..++. +
T Consensus       142 ~~~~~~~~~g~W~~~~~~~~~l~g~tvgIIG-lG~IG~~vA~~l~-~~G~~V~-~~d~~~~-~~~~~------~~g~~-~  210 (335)
T 2g76_A          142 PQATASMKDGKWERKKFMGTELNGKTLGILG-LGRIGREVATRMQ-SFGMKTI-GYDPIIS-PEVSA------SFGVQ-Q  210 (335)
T ss_dssp             HHHHHHHHTTCCCTGGGCBCCCTTCEEEEEC-CSHHHHHHHHHHH-TTTCEEE-EECSSSC-HHHHH------HTTCE-E
T ss_pred             HHHHHHHHcCCCCccCCCCcCCCcCEEEEEe-ECHHHHHHHHHHH-HCCCEEE-EECCCcc-hhhhh------hcCce-e
Confidence            3334455556552110 01122346899999 7999999999987 4689976 4665321 11111      22333 3


Q ss_pred             CCHHHHHhcccccCCccEEEEccC
Q 031216           92 SDLTMVLGSISQSKARAVVIDFTD  115 (163)
Q Consensus        92 ~~l~ell~~~~~~~~~DVVIDfT~  115 (163)
                      .++++++.      ..|+|+...+
T Consensus       211 ~~l~ell~------~aDvV~l~~P  228 (335)
T 2g76_A          211 LPLEEIWP------LCDFITVHTP  228 (335)
T ss_dssp             CCHHHHGG------GCSEEEECCC
T ss_pred             CCHHHHHh------cCCEEEEecC
Confidence            58999885      8999996653

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=96.23  E-value=0.0045  Score=44.26  Aligned_cols=106  Identities=13%  Similarity=0.117  Sum_probs=55.0

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcc-eeC---CHHHHHhcccccCCccE
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP-VMS---DLTMVLGSISQSKARAV  109 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~-v~~---~l~ell~~~~~~~~~DV  109 (163)
                      +|.+|+|+| .|++|+.+++.+.+ .+.++++ +|++.  .....+.    ..++. ++.   +.+.+...  .-.++|+
T Consensus         5 ~~~~v~I~G-~G~iG~~la~~L~~-~g~~V~~-id~~~--~~~~~~~----~~~~~~~~gd~~~~~~l~~~--~~~~~d~   73 (141)
T 3llv_A            5 GRYEYIVIG-SEAAGVGLVRELTA-AGKKVLA-VDKSK--EKIELLE----DEGFDAVIADPTDESFYRSL--DLEGVSA   73 (141)
T ss_dssp             -CCSEEEEC-CSHHHHHHHHHHHH-TTCCEEE-EESCH--HHHHHHH----HTTCEEEECCTTCHHHHHHS--CCTTCSE
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHH-CCCeEEE-EECCH--HHHHHHH----HCCCcEEECCCCCHHHHHhC--CcccCCE
Confidence            356899999 59999999999874 5788874 56432  1122221    11222 222   22222210  0147899


Q ss_pred             EEEccCchhH-HHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHH
Q 031216          110 VIDFTDASTV-YDNVKQATAFGMRSVVYVPHIQLETVSALSAF  151 (163)
Q Consensus       110 VIDfT~p~~~-~~~~~~al~~G~~vVigttg~~~e~~~~L~~~  151 (163)
                      ||..+..... ...+..+.+.|...|+.. ..+++..+.|.++
T Consensus        74 vi~~~~~~~~n~~~~~~a~~~~~~~iia~-~~~~~~~~~l~~~  115 (141)
T 3llv_A           74 VLITGSDDEFNLKILKALRSVSDVYAIVR-VSSPKKKEEFEEA  115 (141)
T ss_dssp             EEECCSCHHHHHHHHHHHHHHCCCCEEEE-ESCGGGHHHHHHT
T ss_pred             EEEecCCHHHHHHHHHHHHHhCCceEEEE-EcChhHHHHHHHc
Confidence            8855543332 334445555554333322 2344455555544

>4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A*

Probab=96.23  E-value=0.041  Score=42.47  Aligned_cols=84  Identities=19%  Similarity=0.220  Sum_probs=54.7

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCC---HHHHHhcccccCCccEE
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSD---LTMVLGSISQSKARAVV  110 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~---l~ell~~~~~~~~~DVV  110 (163)
                      .+.|+.|+|| |..|+.+++.+.+ .+.+++|.+|.....   ..      -.++|++..   ++++..     ...|-+
T Consensus        11 ~~k~v~IiGA-Gg~g~~v~~~l~~-~~~~~vgfiDd~~~~---~~------~~g~~Vlg~~~~~~~~~~-----~~~~~v   74 (220)
T 4ea9_A           11 AIGGVVIIGG-GGHAKVVIESLRA-CGETVAAIVDADPTR---RA------VLGVPVVGDDLALPMLRE-----QGLSRL   74 (220)
T ss_dssp             CSSCEEEECC-SHHHHHHHHHHHH-TTCCEEEEECSCC------C------BTTBCEEESGGGHHHHHH-----TTCCEE
T ss_pred             CCCCEEEEcC-CHHHHHHHHHHHh-CCCEEEEEEeCCccc---Cc------CCCeeEECCHHHHHHhhc-----ccccEE
Confidence            4568999996 9999999999886 789999999964321   11      236777744   344443     245544


Q ss_pred             EEcc-CchhHHHHHHHHHHcCCcE
Q 031216          111 IDFT-DASTVYDNVKQATAFGMRS  133 (163)
Q Consensus       111 IDfT-~p~~~~~~~~~al~~G~~v  133 (163)
                      +-.- .+..-.+....+.+.|..+
T Consensus        75 ~iAIg~~~~R~~i~~~l~~~g~~~   98 (220)
T 4ea9_A           75 FVAIGDNRLRQKLGRKARDHGFSL   98 (220)
T ss_dssp             EECCCCHHHHHHHHHHHHHTTCEE
T ss_pred             EEecCCHHHHHHHHHHHHhcCCCc
Confidence            4222 3333456777888887654

>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}

Probab=96.21  E-value=0.018  Score=45.94  Aligned_cols=34  Identities=21%  Similarity=0.393  Sum_probs=27.8

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid   68 (163)
                      ++++|.|+|++|.+|+.+++.+.+ .+.+++++..
T Consensus        11 ~~~~vlVTGatG~iG~~l~~~L~~-~G~~V~~~~r   44 (321)
T 2pk3_A           11 GSMRALITGVAGFVGKYLANHLTE-QNVEVFGTSR   44 (321)
T ss_dssp             --CEEEEETTTSHHHHHHHHHHHH-TTCEEEEEES
T ss_pred             CcceEEEECCCChHHHHHHHHHHH-CCCEEEEEec
Confidence            467899999999999999999985 5789887543

>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A*

Probab=96.21  E-value=0.018  Score=45.77  Aligned_cols=32  Identities=22%  Similarity=0.359  Sum_probs=27.2

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid   68 (163)
                      +||.|+|++|.+|+.+++.+.+ .+.+++++..
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~-~g~~V~~~~r   32 (312)
T 3ko8_A            1 MRIVVTGGAGFIGSHLVDKLVE-LGYEVVVVDN   32 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEEECC
T ss_pred             CEEEEECCCChHHHHHHHHHHh-CCCEEEEEeC
Confidence            5899999999999999999985 5788886543

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=96.21  E-value=0.032  Score=48.46  Aligned_cols=37  Identities=27%  Similarity=0.420  Sum_probs=28.6

Q ss_pred             CCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 031216           31 PPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (163)
Q Consensus        31 ~~~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~   70 (163)
                      ++..+.||+|+| .|.||..++..+. ..+++++ ++|++
T Consensus        33 ~~~~~~kV~VIG-aG~MG~~iA~~la-~~G~~V~-l~D~~   69 (463)
T 1zcj_A           33 SAQPVSSVGVLG-LGTMGRGIAISFA-RVGISVV-AVESD   69 (463)
T ss_dssp             CCCCCCEEEEEC-CSHHHHHHHHHHH-TTTCEEE-EECSS
T ss_pred             ccCCCCEEEEEC-cCHHHHHHHHHHH-hCCCeEE-EEECC
Confidence            344567899999 5999999999887 5688876 46743

>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}

Probab=96.21  E-value=0.014  Score=46.20  Aligned_cols=58  Identities=26%  Similarity=0.237  Sum_probs=29.2

Q ss_pred             eecccccccccccc-eeeeccCCCCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031216            9 HCRMHHISQNVKAK-RFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (163)
Q Consensus         9 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid   68 (163)
                      |-|.||-+.|-|-. .+.+.+-. .....++.|+|++|.+|+.+++.+.+ .|.+++....
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~m~-~~~~k~vlVTGas~gIG~aia~~l~~-~G~~V~~~~r   60 (260)
T 3un1_A            2 HHHHHHSSGVDLGTENLYFQSMM-RNQQKVVVITGASQGIGAGLVRAYRD-RNYRVVATSR   60 (260)
T ss_dssp             ------------------CHHHH-HTTCCEEEESSCSSHHHHHHHHHHHH-TTCEEEEEES
T ss_pred             CcccCcchhhhhhhhhhhhhhhh-CcCCCEEEEeCCCCHHHHHHHHHHHH-CCCEEEEEeC
Confidence            34556655554433 33333321 12235799999999999999999984 5888876543

>3au8_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; NADPH binding; HET: NDP; 1.86A {Plasmodium falciparum} PDB: 3au9_A* 3aua_A*

Probab=96.20  E-value=0.028  Score=49.46  Aligned_cols=121  Identities=12%  Similarity=0.029  Sum_probs=70.1

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHh---cC-CcEEEEEEecCCC------------------C-cchhhhcc-CC--CCCC
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTK---AR-GMEVAGAIDSHSV------------------G-EDIGMVCD-ME--QPLE   87 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~---~~-~~eLvgvid~~~~------------------g-~~~~~l~g-~~--~~~g   87 (163)
                      +|.||.|.|++|-+|+..+..+.+   +| .++++|+...+..                  . ....++-. +.  ...+
T Consensus        76 ~mk~I~ILGSTGSIGtqTLdVi~~~p~~pd~f~V~aLaAg~Nv~lL~eQ~~ef~P~~v~v~d~~~~~~L~~~l~~~~~~~  155 (488)
T 3au8_A           76 KPINVAIFGSTGSIGTNALNIIRECNKIENVFNVKALYVNKSVNELYEQAREFLPEYLCIHDKSVYEELKELVKNIKDYK  155 (488)
T ss_dssp             -CEEEEEETTTSHHHHHHHHHHHHHHHHSCCEEEEEEEESSCHHHHHHHHHHHCCSEEEESCGGGTHHHHTGGGGSTTCC
T ss_pred             cceEEEEEccCcHHHHHHHHHHHcccCCCCeEEEEEEEcCCCHHHHHHHHHHcCCCEEEEcCHHHHHHHHHHhhhhcCCC
Confidence            577899999999999999999988   44 4999999873210                  0 00111100 00  0112


Q ss_pred             cceeCCHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhc
Q 031216           88 IPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKA  155 (163)
Q Consensus        88 i~v~~~l~ell~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~~  155 (163)
                      +.++...+. +.+++...++|+|+..-.=.....-...|+++|+.+-...-+---.-.+.+.+++++.
T Consensus       156 ~~v~~G~eg-l~e~a~~~~~D~Vv~AIvG~aGL~PTlaAi~aGK~IALANKESLV~aG~Lv~~~a~~~  222 (488)
T 3au8_A          156 PIILCGDEG-MKEICSSNSIDKIVIGIDSFQGLYSTMYAIMNNKIVALANKESIVSAGFFLKKLLNIH  222 (488)
T ss_dssp             CEEEEHHHH-HHHHHHCTTCCEEEECCCHHHHHHHHHHHHHTTCEEEECCSHHHHHHHHHHHHHHHHS
T ss_pred             ceEEeCHHH-HHHHhcCCCCCEEEEccccHhHHHHHHHHHHCCCcEEEecchhhhhchHHHHHHHHhc
Confidence            333322222 1122223579998855444445677788999999998855422223334556666665

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*

Probab=96.19  E-value=0.018  Score=47.76  Aligned_cols=89  Identities=12%  Similarity=0.133  Sum_probs=52.6

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcce-eC----C---HHHHHhcccccCC
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MS----D---LTMVLGSISQSKA  106 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v-~~----~---l~ell~~~~~~~~  106 (163)
                      +++|.|+|++|.+|+.+++.+.+ .+.++.++..+.. ......+..   ..++.+ ..    |   +++++.      .
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~-~g~~V~~~~R~~~-~~~~~~l~~---~~~v~~v~~D~l~d~~~l~~~~~------~   73 (352)
T 1xgk_A            5 KKTIAVVGATGRQGASLIRVAAA-VGHHVRAQVHSLK-GLIAEELQA---IPNVTLFQGPLLNNVPLMDTLFE------G   73 (352)
T ss_dssp             CCCEEEESTTSHHHHHHHHHHHH-TTCCEEEEESCSC-SHHHHHHHT---STTEEEEESCCTTCHHHHHHHHT------T
T ss_pred             CCEEEEECCCCHHHHHHHHHHHh-CCCEEEEEECCCC-hhhHHHHhh---cCCcEEEECCccCCHHHHHHHHh------c
Confidence            36899999999999999999985 6788887654322 111112211   012211 11    3   445553      7


Q ss_pred             ccEEEEccCch------hHHHHHHHHHHcC-C-cEE
Q 031216          107 RAVVIDFTDAS------TVYDNVKQATAFG-M-RSV  134 (163)
Q Consensus       107 ~DVVIDfT~p~------~~~~~~~~al~~G-~-~vV  134 (163)
                      +|+||..+...      .....+..+.+.| + ++|
T Consensus        74 ~d~Vi~~a~~~~~~~~~~~~~l~~aa~~~g~v~~~V  109 (352)
T 1xgk_A           74 AHLAFINTTSQAGDEIAIGKDLADAAKRAGTIQHYI  109 (352)
T ss_dssp             CSEEEECCCSTTSCHHHHHHHHHHHHHHHSCCSEEE
T ss_pred             CCEEEEcCCCCCcHHHHHHHHHHHHHHHcCCccEEE
Confidence            99999765321      2244556777778 5 555

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=96.18  E-value=0.0099  Score=41.75  Aligned_cols=104  Identities=15%  Similarity=0.141  Sum_probs=55.4

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcc-ee---CCHHHHHhcccccCCccEE
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP-VM---SDLTMVLGSISQSKARAVV  110 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~-v~---~~l~ell~~~~~~~~~DVV  110 (163)
                      +.+|+|+|+ |.+|+.+++.+.+ .+.+++ ++|+..  .....+.    ..+.. +.   .+.+.+...  .-.++|+|
T Consensus         6 ~~~v~I~G~-G~iG~~~a~~l~~-~g~~v~-~~d~~~--~~~~~~~----~~~~~~~~~d~~~~~~l~~~--~~~~~d~v   74 (144)
T 2hmt_A            6 NKQFAVIGL-GRFGGSIVKELHR-MGHEVL-AVDINE--EKVNAYA----SYATHAVIANATEENELLSL--GIRNFEYV   74 (144)
T ss_dssp             CCSEEEECC-SHHHHHHHHHHHH-TTCCCE-EEESCH--HHHHTTT----TTCSEEEECCTTCHHHHHTT--TGGGCSEE
T ss_pred             CCcEEEECC-CHHHHHHHHHHHH-CCCEEE-EEeCCH--HHHHHHH----HhCCEEEEeCCCCHHHHHhc--CCCCCCEE
Confidence            457999995 9999999999875 467766 456431  1111111    11221 22   233332210  01379999


Q ss_pred             EEccCch-h-HHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHH
Q 031216          111 IDFTDAS-T-VYDNVKQATAFGMRSVVYVPHIQLETVSALSA  150 (163)
Q Consensus       111 IDfT~p~-~-~~~~~~~al~~G~~vVigttg~~~e~~~~L~~  150 (163)
                      |.++... . ....+..+.+.|.+-++... .+.+..+.|.+
T Consensus        75 i~~~~~~~~~~~~~~~~~~~~~~~~ii~~~-~~~~~~~~l~~  115 (144)
T 2hmt_A           75 IVAIGANIQASTLTTLLLKELDIPNIWVKA-QNYYHHKVLEK  115 (144)
T ss_dssp             EECCCSCHHHHHHHHHHHHHTTCSEEEEEC-CSHHHHHHHHH
T ss_pred             EECCCCchHHHHHHHHHHHHcCCCeEEEEe-CCHHHHHHHHH
Confidence            9776532 2 23455666677766444322 23444444544

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=96.18  E-value=0.012  Score=52.01  Aligned_cols=67  Identities=16%  Similarity=0.155  Sum_probs=46.1

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEc
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDf  113 (163)
                      ...+|+|+| +|+||+.+++.+.. -++++.+ +|+... .....      ..|+... ++++++.      .+|+|+.+
T Consensus       141 ~g~~vgIIG-~G~IG~~vA~~l~~-~G~~V~~-~d~~~~-~~~a~------~~g~~~~-~l~e~~~------~aDvV~l~  203 (529)
T 1ygy_A          141 FGKTVGVVG-LGRIGQLVAQRIAA-FGAYVVA-YDPYVS-PARAA------QLGIELL-SLDDLLA------RADFISVH  203 (529)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHT-TTCEEEE-ECTTSC-HHHHH------HHTCEEC-CHHHHHH------HCSEEEEC
T ss_pred             CCCEEEEEe-eCHHHHHHHHHHHh-CCCEEEE-ECCCCC-hhHHH------hcCcEEc-CHHHHHh------cCCEEEEC
Confidence            347999999 79999999999874 5888774 575431 11111      2233333 8999885      89999977


Q ss_pred             cCch
Q 031216          114 TDAS  117 (163)
Q Consensus       114 T~p~  117 (163)
                      +++.
T Consensus       204 ~P~~  207 (529)
T 1ygy_A          204 LPKT  207 (529)
T ss_dssp             CCCS
T ss_pred             CCCc
Confidence            6544

>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*

Probab=96.17  E-value=0.019  Score=46.53  Aligned_cols=33  Identities=18%  Similarity=0.180  Sum_probs=27.5

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCC-----cEEEEEEec
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARG-----MEVAGAIDS   69 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~-----~eLvgvid~   69 (163)
                      +||.|+|++|.+|+.+++.+.+ .+     .+++++..+
T Consensus         2 ~~vlVtGatG~iG~~l~~~L~~-~g~~~~~~~V~~~~r~   39 (364)
T 2v6g_A            2 SVALIVGVTGIIGNSLAEILPL-ADTPGGPWKVYGVARR   39 (364)
T ss_dssp             EEEEEETTTSHHHHHHHHHTTS-TTCTTCSEEEEEEESS
T ss_pred             CEEEEECCCcHHHHHHHHHHHh-CCCCCCceEEEEEeCC
Confidence            5899999999999999999875 45     888876543

>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens}

Probab=96.17  E-value=0.03  Score=45.18  Aligned_cols=35  Identities=17%  Similarity=0.151  Sum_probs=27.6

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCC------cEEEEEEe
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARG------MEVAGAID   68 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~------~eLvgvid   68 (163)
                      .+++|.|+|++|.+|+.+++.+.+...      .+++++..
T Consensus        13 ~~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~~V~~~~r   53 (342)
T 2hrz_A           13 QGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDV   53 (342)
T ss_dssp             SCEEEEEETTTSHHHHHHHHHHHHHCEETTEEEEEEEEEES
T ss_pred             cCCEEEEECCCcHHHHHHHHHHHhcCCcccCCCceEEEEEc
Confidence            357999999999999999999986431      67776543

>1bgv_A Glutamate dehydrogenase; oxidoreductase; HET: GLU; 1.90A {Clostridium symbiosum} SCOP: c.2.1.7 c.58.1.1 PDB: 1hrd_A 1k89_A 1aup_A 2yfh_A

Probab=96.16  E-value=0.012  Score=51.51  Aligned_cols=116  Identities=13%  Similarity=0.183  Sum_probs=74.6

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-----CCCc----chhhhccCCCC--C---------CcceeCC
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGE----DIGMVCDMEQP--L---------EIPVMSD   93 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~-----~~g~----~~~~l~g~~~~--~---------gi~v~~~   93 (163)
                      ...+|+|.| .|.||...++.+. ..+.+++++.|+.     +.|.    ++..+......  .         +.... +
T Consensus       229 ~g~~v~VqG-~GnVG~~~a~~L~-~~GakvVavsD~~G~i~dp~Gi~d~edi~~l~~~k~~~~g~v~~y~~~~~a~~i-~  305 (449)
T 1bgv_A          229 VGKTVALAG-FGNVAWGAAKKLA-ELGAKAVTLSGPDGYIYDPEGITTEEKINYMLEMRASGRNKVQDYADKFGVQFF-P  305 (449)
T ss_dssp             TTCEEEECC-SSHHHHHHHHHHH-HHTCEEEEEEETTEEEECTTCSCSHHHHHHHHHHHHHCCCCTHHHHHHHTCEEE-E
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHH-HCCCEEEEEEeCCceEECCCcCCCHHHHHHHHHHHhccCCChhhcccccCCEEe-C
Confidence            347899999 6999999998886 4699999999952     4454    32222211100  0         11111 1


Q ss_pred             HHHHHhcccccCCccEEEEccCchhH-HHHHHHHHHcCCcEEEeCC--CCCHHHHHHHHHHhhhcCeEEc
Q 031216           94 LTMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMVST  160 (163)
Q Consensus        94 l~ell~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigtt--g~~~e~~~~L~~~A~~~~Vv~t  160 (163)
                      .++++.     .++|+++-+..+... .+++......|+.+|++-.  .++++..   +.+.++.||++.
T Consensus       306 ~~e~~~-----~~~Dil~P~A~~~~I~~~na~~l~a~g~kiV~EgAN~p~T~eA~---~~l~~~~Gi~~~  367 (449)
T 1bgv_A          306 GEKPWG-----QKVDIIMPCATQNDVDLEQAKKIVANNVKYYIEVANMPTTNEAL---RFLMQQPNMVVA  367 (449)
T ss_dssp             TCCGGG-----SCCSEEECCSCTTCBCHHHHHHHHHTTCCEEECCSSSCBCHHHH---HHHHHCTTCEEE
T ss_pred             chhhhc-----CCcceeeccccccccchhhHHHHHhcCCeEEEeCCCCcCCHHHH---HHHHHcCCEEEE
Confidence            234554     599999977766655 6788888888999999876  4566553   233333277664

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=96.15  E-value=0.025  Score=48.64  Aligned_cols=101  Identities=18%  Similarity=0.042  Sum_probs=59.8

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEc
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDf  113 (163)
                      .-.++||+| +|+||+.+++.+. .-|+++. ++|+... .   .      ..++....++++++.      ..|+|+..
T Consensus       144 ~gktlGiIG-lG~IG~~vA~~l~-~~G~~V~-~~d~~~~-~---~------~~~~~~~~~l~ell~------~aDvV~l~  204 (404)
T 1sc6_A          144 RGKKLGIIG-YGHIGTQLGILAE-SLGMYVY-FYDIENK-L---P------LGNATQVQHLSDLLN------MSDVVSLH  204 (404)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHH-HTTCEEE-EECSSCC-C---C------CTTCEECSCHHHHHH------HCSEEEEC
T ss_pred             CCCEEEEEe-ECHHHHHHHHHHH-HCCCEEE-EEcCCch-h---c------cCCceecCCHHHHHh------cCCEEEEc
Confidence            346899999 7999999999987 4689986 4675321 0   0      112334568999986      79999865


Q ss_pred             cCch--h---HHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhh
Q 031216          114 TDAS--T---VYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDK  154 (163)
Q Consensus       114 T~p~--~---~~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~  154 (163)
                      .+..  .   ..+-....++.|.-+|--.+|--. +.+.|.++.++
T Consensus       205 ~P~t~~t~~li~~~~l~~mk~ga~lIN~aRg~~v-d~~aL~~aL~~  249 (404)
T 1sc6_A          205 VPENPSTKNMMGAKEISLMKPGSLLINASRGTVV-DIPALADALAS  249 (404)
T ss_dssp             CCSSTTTTTCBCHHHHHHSCTTEEEEECSCSSSB-CHHHHHHHHHT
T ss_pred             cCCChHHHHHhhHHHHhhcCCCeEEEECCCChHH-hHHHHHHHHHc
Confidence            5322  1   113334455666555543333211 22344444444

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=96.15  E-value=0.0083  Score=50.10  Aligned_cols=104  Identities=13%  Similarity=0.029  Sum_probs=60.0

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT  114 (163)
                      ..+|+|+| .|+||+.+++.+.. -++++. ++|+... ....       .. +...+++++++.      ..|+|+...
T Consensus       146 g~~vgIiG-~G~IG~~~A~~l~~-~G~~V~-~~d~~~~-~~~~-------~~-~~~~~~l~ell~------~aDvV~l~~  207 (333)
T 1j4a_A          146 DQVVGVVG-TGHIGQVFMQIMEG-FGAKVI-TYDIFRN-PELE-------KK-GYYVDSLDDLYK------QADVISLHV  207 (333)
T ss_dssp             GSEEEEEC-CSHHHHHHHHHHHH-TTCEEE-EECSSCC-HHHH-------HT-TCBCSCHHHHHH------HCSEEEECS
T ss_pred             CCEEEEEc-cCHHHHHHHHHHHH-CCCEEE-EECCCcc-hhHH-------hh-CeecCCHHHHHh------hCCEEEEcC
Confidence            46899999 79999999999874 588876 4665321 1111       11 222358999885      899999665


Q ss_pred             Cch-hHH----HHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCe
Q 031216          115 DAS-TVY----DNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASM  157 (163)
Q Consensus       115 ~p~-~~~----~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~V  157 (163)
                      ... ...    +.....++.|.-+|.-..|- ..+.+.|.++.++..+
T Consensus       208 p~~~~t~~li~~~~l~~mk~ga~lIn~arg~-~vd~~aL~~aL~~g~i  254 (333)
T 1j4a_A          208 PDVPANVHMINDESIAKMKQDVVIVNVSRGP-LVDTDAVIRGLDSGKI  254 (333)
T ss_dssp             CCCGGGTTCBSHHHHHHSCTTEEEEECSCGG-GBCHHHHHHHHHHTSE
T ss_pred             CCcHHHHHHHhHHHHhhCCCCcEEEECCCCc-ccCHHHHHHHHHhCCc
Confidence            321 111    22334455565444433332 1223455555555443

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=96.13  E-value=0.022  Score=45.61  Aligned_cols=32  Identities=25%  Similarity=0.298  Sum_probs=27.4

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid   68 (163)
                      ++|.|+|++|.+|+.+++.+.+ .+.+++++..
T Consensus         4 ~~vlVtGatG~iG~~l~~~L~~-~G~~V~~~~r   35 (345)
T 2z1m_A            4 KRALITGIRGQDGAYLAKLLLE-KGYEVYGADR   35 (345)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEEECS
T ss_pred             CEEEEECCCChHHHHHHHHHHH-CCCEEEEEEC
Confidence            5899999999999999999985 5889886543

>2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A*

Probab=96.11  E-value=0.026  Score=44.95  Aligned_cols=30  Identities=33%  Similarity=0.506  Sum_probs=26.2

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEE
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgv   66 (163)
                      |||.|+|++|.+|+.+++.+.+ .+.+++++
T Consensus         1 m~vlVTGatG~iG~~l~~~L~~-~G~~V~~~   30 (311)
T 2p5y_A            1 MRVLVTGGAGFIGSHIVEDLLA-RGLEVAVL   30 (311)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHT-TTCEEEEE
T ss_pred             CEEEEEeCCcHHHHHHHHHHHH-CCCEEEEE
Confidence            4899999999999999999874 68888765

>1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2

Probab=96.10  E-value=0.023  Score=46.30  Aligned_cols=33  Identities=21%  Similarity=0.269  Sum_probs=27.8

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid   68 (163)
                      |++|.|+|++|.+|+.+++.+.+ .+.+++++..
T Consensus         1 m~~vlVtGatG~iG~~l~~~L~~-~g~~V~~~~r   33 (372)
T 1db3_A            1 SKVALITGVTGQDGSYLAEFLLE-KGYEVHGIKR   33 (372)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHH-TTCEEEEECC
T ss_pred             CCEEEEECCCChHHHHHHHHHHH-CCCEEEEEEC
Confidence            56899999999999999999985 4788886543

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=96.10  E-value=0.046  Score=43.51  Aligned_cols=32  Identities=25%  Similarity=0.294  Sum_probs=27.1

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~   69 (163)
                      .+|.|+|++|.+|+.+++.+.+ .+.+++. +++
T Consensus        45 k~vlITGasggIG~~la~~L~~-~G~~V~~-~~r   76 (285)
T 2c07_A           45 KVALVTGAGRGIGREIAKMLAK-SVSHVIC-ISR   76 (285)
T ss_dssp             CEEEEESTTSHHHHHHHHHHTT-TSSEEEE-EES
T ss_pred             CEEEEECCCcHHHHHHHHHHHH-cCCEEEE-EcC
Confidence            5799999999999999999874 6888886 554

>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A

Probab=96.09  E-value=0.015  Score=52.86  Aligned_cols=98  Identities=14%  Similarity=0.165  Sum_probs=60.4

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC----------------Ccc----hhh-hccCCCCCCcceeC-
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV----------------GED----IGM-VCDMEQPLEIPVMS-   92 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~----------------g~~----~~~-l~g~~~~~gi~v~~-   92 (163)
                      ..||+|+|+ |..|..+++.+. ..|+.=..++|.+.+                |+.    +.+ +..+.....+..+. 
T Consensus       326 ~arVLIVGa-GGLGs~vA~~La-~aGVG~ItLvD~D~Ve~SNL~RQ~L~~~~dIG~~KAeaaa~~L~~iNP~V~v~~~~~  403 (615)
T 4gsl_A          326 NTKVLLLGA-GTLGCYVSRALI-AWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDATGVKL  403 (615)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHH-HTTCCEEEEECCCBCCTTGGGTSTTCCGGGTTSBHHHHHHHHHHHHCTTCEEEEECC
T ss_pred             CCeEEEECC-CHHHHHHHHHHH-HcCCCEEEEEcCCCCcccCcccccCCChhhcChHHHHHHHHHHHhhCCCcEEEEeec
Confidence            368999995 999999999987 568877778895321                111    000 00000011111111 


Q ss_pred             --------------------CHHHHHhcccccCCccEEEEccCc-hhHHHHHHHHHHcCCcEEEeCCCC
Q 031216           93 --------------------DLTMVLGSISQSKARAVVIDFTDA-STVYDNVKQATAFGMRSVVYVPHI  140 (163)
Q Consensus        93 --------------------~l~ell~~~~~~~~~DVVIDfT~p-~~~~~~~~~al~~G~~vVigttg~  140 (163)
                                          ++++++.      ++|+|||++.. +.-...-..|.++|+++|.+..|+
T Consensus       404 ~Ipm~gh~v~~e~~~~l~~~~l~~ll~------~~DlVvd~tDn~~tR~~ln~~c~~~~~PlI~aalG~  466 (615)
T 4gsl_A          404 SIPMIGHKLVNEEAQHKDFDRLRALIK------EHDIIFLLVDSRESRWLPSLLSNIENKTVINAALGF  466 (615)
T ss_dssp             CCCCTTCCCSCHHHHHHHHHHHHHHHH------HCSEEEECCSSGGGTHHHHHHHHHTTCEEEEEEECS
T ss_pred             cccccCccccchhhhcCCHHHHHHHhh------cCCEEEecCCCHHHHHHHHHHHHHcCCeEEEEEccc
Confidence                                2344553      79999999854 444566688999999998764343

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=96.07  E-value=0.024  Score=46.80  Aligned_cols=56  Identities=20%  Similarity=0.235  Sum_probs=27.8

Q ss_pred             cccccccccceeeeccCC---CCCC---CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 031216           13 HHISQNVKAKRFISCSTN---PPQS---NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (163)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~---~~~~---~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~   70 (163)
                      ||-|....-.|-|.-..-   ..+.   ..||.|+| .|..|..+++.+.. .|+-=..++|.+
T Consensus         8 ~~~~~~~~y~r~i~L~~~G~~~~q~kL~~~~VlVvG-aGGlGs~va~~La~-aGVG~i~lvD~D   69 (292)
T 3h8v_A            8 HHHSSGLVPRGSMALKRMGIVSDYEKIRTFAVAIVG-VGGVGSVTAEMLTR-CGIGKLLLFDYD   69 (292)
T ss_dssp             ------------------------CGGGGCEEEEEC-CSHHHHHHHHHHHH-HTCSEEEEECCC
T ss_pred             ccccCCCCchHhhcccccChHHHHHHHhCCeEEEEC-cCHHHHHHHHHHHH-cCCCEEEEECCC
Confidence            444545555554443322   1233   46899999 59999999999884 577666788843

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=96.07  E-value=0.029  Score=48.57  Aligned_cols=103  Identities=16%  Similarity=0.086  Sum_probs=59.3

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEc
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDf  113 (163)
                      .-.+|||+| +|+||+.+++.+.. -|+++.+ +|+... ..         ..+...+.++++++.      ..|+|+..
T Consensus       155 ~gktvGIIG-lG~IG~~vA~~l~~-~G~~V~~-yd~~~~-~~---------~~~~~~~~sl~ell~------~aDvV~lh  215 (416)
T 3k5p_A          155 RGKTLGIVG-YGNIGSQVGNLAES-LGMTVRY-YDTSDK-LQ---------YGNVKPAASLDELLK------TSDVVSLH  215 (416)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHH-TTCEEEE-ECTTCC-CC---------BTTBEECSSHHHHHH------HCSEEEEC
T ss_pred             CCCEEEEEe-eCHHHHHHHHHHHH-CCCEEEE-ECCcch-hc---------ccCcEecCCHHHHHh------hCCEEEEe
Confidence            346899999 79999999999874 5899874 665321 00         112334579999996      89998855


Q ss_pred             cCchh-H----HHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcC
Q 031216          114 TDAST-V----YDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKAS  156 (163)
Q Consensus       114 T~p~~-~----~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~  156 (163)
                      .+... .    .+-....++.|.-+|--..|--.+ .+.|.++-++..
T Consensus       216 vPlt~~T~~li~~~~l~~mk~gailIN~aRG~vvd-~~aL~~aL~~g~  262 (416)
T 3k5p_A          216 VPSSKSTSKLITEAKLRKMKKGAFLINNARGSDVD-LEALAKVLQEGH  262 (416)
T ss_dssp             CCC-----CCBCHHHHHHSCTTEEEEECSCTTSBC-HHHHHHHHHTTS
T ss_pred             CCCCHHHhhhcCHHHHhhCCCCcEEEECCCChhhh-HHHHHHHHHcCC
Confidence            43211 1    122334455555554433343222 234554444433

>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}

Probab=96.02  E-value=0.012  Score=48.93  Aligned_cols=87  Identities=13%  Similarity=0.034  Sum_probs=56.7

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCc--ceeCCHHHHHhcccccCCccEEEE
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI--PVMSDLTMVLGSISQSKARAVVID  112 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi--~v~~~l~ell~~~~~~~~~DVVID  112 (163)
                      ..+++|+| +|.||+.+++.+....+++-+-+++++ ..+...+.+.  ...++  .++ ++++++.      ++|+||-
T Consensus       121 ~~~v~iIG-aG~~a~~~~~al~~~~~~~~V~v~~r~-~a~~la~~l~--~~~g~~~~~~-~~~eav~------~aDIVi~  189 (313)
T 3hdj_A          121 SSVLGLFG-AGTQGAEHAAQLSARFALEAILVHDPY-ASPEILERIG--RRCGVPARMA-APADIAA------QADIVVT  189 (313)
T ss_dssp             CCEEEEEC-CSHHHHHHHHHHHHHSCCCEEEEECTT-CCHHHHHHHH--HHHTSCEEEC-CHHHHHH------HCSEEEE
T ss_pred             CcEEEEEC-ccHHHHHHHHHHHHhCCCcEEEEECCc-HHHHHHHHHH--HhcCCeEEEe-CHHHHHh------hCCEEEE
Confidence            36899999 699999999999875557777788876 3232222110  01133  345 9999985      8999996


Q ss_pred             ccCchhHHHHH-HHHHHcCCcEE
Q 031216          113 FTDASTVYDNV-KQATAFGMRSV  134 (163)
Q Consensus       113 fT~p~~~~~~~-~~al~~G~~vV  134 (163)
                      +|....  +.+ ...++.|.+|+
T Consensus       190 aT~s~~--pvl~~~~l~~G~~V~  210 (313)
T 3hdj_A          190 ATRSTT--PLFAGQALRAGAFVG  210 (313)
T ss_dssp             CCCCSS--CSSCGGGCCTTCEEE
T ss_pred             ccCCCC--cccCHHHcCCCcEEE
Confidence            664321  111 23467788877

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=95.98  E-value=0.0098  Score=47.92  Aligned_cols=66  Identities=18%  Similarity=0.238  Sum_probs=43.0

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEccC
Q 031216           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (163)
Q Consensus        37 rV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT~  115 (163)
                      |++|+| .|+||+.++..+.+ .+++=+-+++++.  .++.++..   ..+...++++++++.      ++|+||..|+
T Consensus       110 ~vliiG-aGg~a~ai~~~L~~-~G~~~I~v~nR~~--~ka~~la~---~~~~~~~~~~~~~~~------~aDiVInatp  175 (253)
T 3u62_A          110 PVVVVG-AGGAARAVIYALLQ-MGVKDIWVVNRTI--ERAKALDF---PVKIFSLDQLDEVVK------KAKSLFNTTS  175 (253)
T ss_dssp             SEEEEC-CSHHHHHHHHHHHH-TTCCCEEEEESCH--HHHHTCCS---SCEEEEGGGHHHHHH------TCSEEEECSS
T ss_pred             eEEEEC-cHHHHHHHHHHHHH-cCCCEEEEEeCCH--HHHHHHHH---HcccCCHHHHHhhhc------CCCEEEECCC
Confidence            899999 59999999999885 5663334667642  22333321   223233567777664      7899997663

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}

Probab=95.94  E-value=0.02  Score=47.66  Aligned_cols=125  Identities=16%  Similarity=0.093  Sum_probs=67.3

Q ss_pred             cccccccccceeeeccCCC--CCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcce
Q 031216           13 HHISQNVKAKRFISCSTNP--PQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV   90 (163)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~--~~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v   90 (163)
                      +...++++..+|-......  .-...+|+|+| .|+||+.+++.+. .-|+++. ++|+... ....       .. + -
T Consensus       122 ~~~~~~~~~g~w~~~~~~~~~~l~g~~vgIiG-~G~IG~~~A~~l~-~~G~~V~-~~d~~~~-~~~~-------~~-~-~  188 (331)
T 1xdw_A          122 AYTTSRTAKKNFKVDAFMFSKEVRNCTVGVVG-LGRIGRVAAQIFH-GMGATVI-GEDVFEI-KGIE-------DY-C-T  188 (331)
T ss_dssp             HHHHHHHTTTCCCCCSTTCCCCGGGSEEEEEC-CSHHHHHHHHHHH-HTTCEEE-EECSSCC-CSCT-------TT-C-E
T ss_pred             HHHHHHHHcCCCccccCcCccCCCCCEEEEEC-cCHHHHHHHHHHH-HCCCEEE-EECCCcc-HHHH-------hc-c-c
Confidence            3344555556553111111  22347899999 7999999999987 4689976 4665321 1110       11 2 2


Q ss_pred             eCCHHHHHhcccccCCccEEEEccCch-hH----HHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCe
Q 031216           91 MSDLTMVLGSISQSKARAVVIDFTDAS-TV----YDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASM  157 (163)
Q Consensus        91 ~~~l~ell~~~~~~~~~DVVIDfT~p~-~~----~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~V  157 (163)
                      +.++++++.      ..|+|+...+.. ..    .+.....++.|.-+|--..|- ..+.+.|.++.++..+
T Consensus       189 ~~~l~ell~------~aDvV~~~~p~t~~t~~li~~~~l~~mk~ga~lin~srg~-~vd~~aL~~aL~~g~i  253 (331)
T 1xdw_A          189 QVSLDEVLE------KSDIITIHAPYIKENGAVVTRDFLKKMKDGAILVNCARGQ-LVDTEAVIEAVESGKL  253 (331)
T ss_dssp             ECCHHHHHH------HCSEEEECCCCCTTTCCSBCHHHHHTSCTTEEEEECSCGG-GBCHHHHHHHHHHTSE
T ss_pred             cCCHHHHHh------hCCEEEEecCCchHHHHHhCHHHHhhCCCCcEEEECCCcc-cccHHHHHHHHHhCCc
Confidence            468999885      899999654321 11    122333455555444323332 1222445555555443

>4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major}

Probab=95.94  E-value=0.013  Score=49.49  Aligned_cols=91  Identities=22%  Similarity=0.302  Sum_probs=46.0

Q ss_pred             cccccccccccceeeeccCCCC-CCCeeEEEEcCCCHHHHHHHHHHHhcCCc------EEEEEEecCC-----CC--cch
Q 031216           11 RMHHISQNVKAKRFISCSTNPP-QSNIKVIINGAVKEIGRAAVIAVTKARGM------EVAGAIDSHS-----VG--EDI   76 (163)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~-~~~irV~VvGa~G~mG~~i~~~i~~~~~~------eLvgvid~~~-----~g--~~~   76 (163)
                      |.||---|+++|-|     .|+ .+++||.|+||+|++|+.++-.+...+=+      +|+ .+|...     .|  .|+
T Consensus         4 ~~~~~~~~~~~~~~-----~~~s~~~vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~-L~Di~~~~~~~~Gva~DL   77 (345)
T 4h7p_A            4 HHHHHMGTLEAQTQ-----GPGSMSAVKVAVTGAAGQIGYALVPLIARGALLGPTTPVELR-LLDIEPALKALAGVEAEL   77 (345)
T ss_dssp             -----------------------CCCEEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEE-EECCGGGHHHHHHHHHHH
T ss_pred             cccccccccccccc-----CCCCCCCCEEEEECcCcHHHHHHHHHHHhccccCCCCccEEE-EECCCCccccchhhhhhh
Confidence            44555667887733     333 34699999999999999998877654422      454 778432     12  122


Q ss_pred             hhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc
Q 031216           77 GMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (163)
Q Consensus        77 ~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT  114 (163)
                      .+. ..+....+.+.++.++.+.      +.|+||...
T Consensus        78 ~~~-~~~~~~~~~~~~~~~~a~~------~advVvi~a  108 (345)
T 4h7p_A           78 EDC-AFPLLDKVVVTADPRVAFD------GVAIAIMCG  108 (345)
T ss_dssp             HHT-TCTTEEEEEEESCHHHHTT------TCSEEEECC
T ss_pred             hhc-CccCCCcEEEcCChHHHhC------CCCEEEECC
Confidence            221 1111123445688888874      999988643

>4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus}

Probab=95.93  E-value=0.016  Score=48.73  Aligned_cols=38  Identities=13%  Similarity=0.127  Sum_probs=31.6

Q ss_pred             CCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216           31 PPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (163)
Q Consensus        31 ~~~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~   69 (163)
                      ++..+.+|.|+|++|.+|+.+++.+. ..+.++.++..+
T Consensus        65 ~~~~~~~vlVTGatG~iG~~l~~~L~-~~g~~V~~~~R~  102 (427)
T 4f6c_A           65 SHRPLGNTLLTGATGFLGAYLIEALQ-GYSHRIYCFIRA  102 (427)
T ss_dssp             CCCCCEEEEEECTTSHHHHHHHHHHT-TTEEEEEEEEEC
T ss_pred             CCCCCCEEEEecCCcHHHHHHHHHHH-cCCCEEEEEECC
Confidence            34456899999999999999999994 678899887664

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=95.92  E-value=0.057  Score=47.14  Aligned_cols=106  Identities=11%  Similarity=0.077  Sum_probs=61.2

Q ss_pred             CCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC-------CCcc------hhhhcc--CCCCCCcceeCCHHHH
Q 031216           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-------VGED------IGMVCD--MEQPLEIPVMSDLTMV   97 (163)
Q Consensus        33 ~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~-------~g~~------~~~l~g--~~~~~gi~v~~~l~el   97 (163)
                      +.|-+|+|+| +|++|--++..+. ..+.+++| +|.+.       .|+.      +.+++.  . .......++|++++
T Consensus        19 ~~m~~IaViG-lGYVGLp~A~~~A-~~G~~V~g-~Did~~kV~~ln~G~~pi~Epgl~ell~~~~-~~g~l~~tt~~~~a   94 (444)
T 3vtf_A           19 SHMASLSVLG-LGYVGVVHAVGFA-LLGHRVVG-YDVNPSIVERLRAGRPHIYEPGLEEALGRAL-SSGRLSFAESAEEA   94 (444)
T ss_dssp             CCCCEEEEEC-CSHHHHHHHHHHH-HHTCEEEE-ECSCHHHHHHHHTTCCSSCCTTHHHHHHHHH-HTTCEEECSSHHHH
T ss_pred             CCCCEEEEEc-cCHHHHHHHHHHH-hCCCcEEE-EECCHHHHHHHHCCCCCCCCCCHHHHHHHHH-HcCCeeEEcCHHHH
Confidence            3578999999 7999998888776 45889886 57321       1110      111110  0 02234556788887


Q ss_pred             HhcccccCCccEEEEcc-Cch------------hHHHHHHHHHH---cCCcEEEeCC---CCCHHHHHHH
Q 031216           98 LGSISQSKARAVVIDFT-DAS------------TVYDNVKQATA---FGMRSVVYVP---HIQLETVSAL  148 (163)
Q Consensus        98 l~~~~~~~~~DVVIDfT-~p~------------~~~~~~~~al~---~G~~vVigtt---g~~~e~~~~L  148 (163)
                      +.      ..|++|.+- +|.            .+.+.+...++   .|.-||+..|   |.+++....+
T Consensus        95 i~------~ad~~~I~VpTP~~~d~~~Dl~~v~~a~~~I~~~l~~~~~g~lVV~eSTVppGtte~~~~~~  158 (444)
T 3vtf_A           95 VA------ATDATFIAVGTPPAPDGSADLRYVEAAARAVGRGIRAKGRWHLVVVKSTVPPGTTEGLVARA  158 (444)
T ss_dssp             HH------TSSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHHHHCSCCEEEECSCCCTTTTTTHHHHH
T ss_pred             Hh------cCCceEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCCchHHHHHHHH
Confidence            75      789887542 231            22233333344   3556777666   7776644433

>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa}

Probab=95.90  E-value=0.027  Score=44.85  Aligned_cols=32  Identities=19%  Similarity=0.293  Sum_probs=27.4

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid   68 (163)
                      .||.|+|++|.+|+.+++.+.+ .+.+++++..
T Consensus         2 k~vlVTGatG~iG~~l~~~L~~-~G~~V~~~~r   33 (322)
T 2p4h_X            2 GRVCVTGGTGFLGSWIIKSLLE-NGYSVNTTIR   33 (322)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHH-TTCEEEEECC
T ss_pred             CEEEEECChhHHHHHHHHHHHH-CCCEEEEEEe
Confidence            4799999999999999999874 6889887654

>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*

Probab=95.90  E-value=0.016  Score=46.82  Aligned_cols=34  Identities=26%  Similarity=0.374  Sum_probs=28.5

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~   69 (163)
                      +.+|.|+|++|.+|+.+++.+.+ .+.++++...+
T Consensus         5 ~~~vlVTGatGfIG~~l~~~L~~-~G~~V~~~~r~   38 (337)
T 2c29_D            5 SETVCVTGASGFIGSWLVMRLLE-RGYTVRATVRD   38 (337)
T ss_dssp             -CEEEETTTTSHHHHHHHHHHHH-TTCEEEEEESC
T ss_pred             CCEEEEECCchHHHHHHHHHHHH-CCCEEEEEECC
Confidence            46899999999999999999875 68898876653

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=95.90  E-value=0.028  Score=47.26  Aligned_cols=93  Identities=17%  Similarity=0.212  Sum_probs=55.6

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCC------------cchhh---------hccCCCCCCccee-C
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG------------EDIGM---------VCDMEQPLEIPVM-S   92 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g------------~~~~~---------l~g~~~~~gi~v~-~   92 (163)
                      ..||.|+| .|..|..+++.+. ..|+.=+.++|.+...            .+++.         +..+.....+..+ .
T Consensus       118 ~~~VlvvG-~GglGs~va~~La-~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~~  195 (353)
T 3h5n_A          118 NAKVVILG-CGGIGNHVSVILA-TSGIGEIILIDNDQIENTNLTRQVLFSEDDVGKNKTEVIKRELLKRNSEISVSEIAL  195 (353)
T ss_dssp             TCEEEEEC-CSHHHHHHHHHHH-HHTCSEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEEEC
T ss_pred             CCeEEEEC-CCHHHHHHHHHHH-hCCCCeEEEECCCcCcccccccccCCChHHCCChHHHHHHHHHHHHCCCCeEEEeec
Confidence            46899999 5999999999987 4577666788853210            00000         0000000111111 1


Q ss_pred             ------CHHHHHhcccccCCccEEEEccC-ch-hHHHHHHHHHHcCCcEEEe
Q 031216           93 ------DLTMVLGSISQSKARAVVIDFTD-AS-TVYDNVKQATAFGMRSVVY  136 (163)
Q Consensus        93 ------~l~ell~~~~~~~~~DVVIDfT~-p~-~~~~~~~~al~~G~~vVig  136 (163)
                            ++++ +      .++|+|||++. +. .-...-..|.+.|+|+|.+
T Consensus       196 ~i~~~~~~~~-~------~~~DlVvd~~Dn~~~~r~~ln~~c~~~~~p~i~~  240 (353)
T 3h5n_A          196 NINDYTDLHK-V------PEADIWVVSADHPFNLINWVNKYCVRANQPYINA  240 (353)
T ss_dssp             CCCSGGGGGG-S------CCCSEEEECCCCSTTHHHHHHHHHHHTTCCEEEE
T ss_pred             ccCchhhhhH-h------ccCCEEEEecCChHHHHHHHHHHHHHhCCCEEEE
Confidence                  1333 3      48999999884 44 3344557889999999854

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=95.89  E-value=0.024  Score=45.27  Aligned_cols=54  Identities=28%  Similarity=0.322  Sum_probs=26.5

Q ss_pred             ccccccc--ccceeeeccCCCCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216           13 HHISQNV--KAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (163)
Q Consensus        13 ~~~~~~~--~~~~~~~~~~~~~~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~   69 (163)
                      ||-|..|  --++|.+.+-....+ ..+.|+|++|.+|+.+++.+.+ .|.+++. +++
T Consensus         5 ~~~~~~~~~~~~~~~~~~m~~~~~-k~~lVTGas~GIG~aia~~la~-~G~~V~~-~~r   60 (272)
T 4dyv_A            5 HHHSSGVDLGTENLYFQSMSKTGK-KIAIVTGAGSGVGRAVAVALAG-AGYGVAL-AGR   60 (272)
T ss_dssp             -----------------------C-CEEEETTTTSHHHHHHHHHHHH-TTCEEEE-EES
T ss_pred             ccccccccCCcceeehhhhcCCCC-CEEEEeCCCcHHHHHHHHHHHH-CCCEEEE-EEC
Confidence            3444444  347777776543333 5688999999999999999984 6888765 454

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=95.89  E-value=0.11  Score=41.53  Aligned_cols=48  Identities=19%  Similarity=0.226  Sum_probs=29.5

Q ss_pred             cccceeeeccCCCCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 031216           19 VKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (163)
Q Consensus        19 ~~~~~~~~~~~~~~~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvi   67 (163)
                      .+.+++++.+-...-....+.|+|++|.+|+.+++.+. ..+.+++.+.
T Consensus        13 ~~~~n~~~~~mm~~~~~k~~lVTGas~GIG~aia~~la-~~G~~V~~~~   60 (280)
T 4da9_A           13 LGTENLYFQSMMTQKARPVAIVTGGRRGIGLGIARALA-ASGFDIAITG   60 (280)
T ss_dssp             ----------CCSCCCCCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEE
T ss_pred             ccccchhhhhhhhccCCCEEEEecCCCHHHHHHHHHHH-HCCCeEEEEe
Confidence            34566666554444444679999999999999999998 4688887544

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=95.88  E-value=0.019  Score=47.55  Aligned_cols=60  Identities=22%  Similarity=0.188  Sum_probs=42.9

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEc
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDf  113 (163)
                      ...+|+|+| .|+||+.+++.+.. -++++. ++|+.....          .  + .+.++++++.      ..|+|+..
T Consensus       143 ~g~~vgIIG-~G~IG~~~A~~l~~-~G~~V~-~~d~~~~~~----------~--~-~~~~l~ell~------~aDvV~l~  200 (311)
T 2cuk_A          143 QGLTLGLVG-MGRIGQAVAKRALA-FGMRVV-YHARTPKPL----------P--Y-PFLSLEELLK------EADVVSLH  200 (311)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHH-TTCEEE-EECSSCCSS----------S--S-CBCCHHHHHH------HCSEEEEC
T ss_pred             CCCEEEEEE-ECHHHHHHHHHHHH-CCCEEE-EECCCCccc----------c--c-ccCCHHHHHh------hCCEEEEe
Confidence            457899999 79999999999874 578876 466532110          1  1 1468888885      78999866


Q ss_pred             cC
Q 031216          114 TD  115 (163)
Q Consensus       114 T~  115 (163)
                      .+
T Consensus       201 ~p  202 (311)
T 2cuk_A          201 TP  202 (311)
T ss_dssp             CC
T ss_pred             CC
Confidence            53

>1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A*

Probab=95.83  E-value=0.05  Score=43.71  Aligned_cols=31  Identities=19%  Similarity=0.365  Sum_probs=26.6

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvi   67 (163)
                      +||.|+|++|.+|+.+++.+.+ .+.+++++.
T Consensus         1 m~vlVTGatG~iG~~l~~~L~~-~G~~V~~~~   31 (338)
T 1udb_A            1 MRVLVTGGSGYIGSHTCVQLLQ-NGHDVIILD   31 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHH-CCCEEEEEe
Confidence            4899999999999999999885 588888653

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=95.82  E-value=0.045  Score=46.96  Aligned_cols=106  Identities=15%  Similarity=0.184  Sum_probs=59.4

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcce-eCCH--HHHHhcccccCCccEEE
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDL--TMVLGSISQSKARAVVI  111 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v-~~~l--~ell~~~~~~~~~DVVI  111 (163)
                      ..+|.|+| .|++|+.+++.+.+ .+.+++. +|.+.  ..+..+.    ..++++ +.|.  .+.+... .-.++|+||
T Consensus         4 ~~~viIiG-~Gr~G~~va~~L~~-~g~~vvv-Id~d~--~~v~~~~----~~g~~vi~GDat~~~~L~~a-gi~~A~~vi   73 (413)
T 3l9w_A            4 GMRVIIAG-FGRFGQITGRLLLS-SGVKMVV-LDHDP--DHIETLR----KFGMKVFYGDATRMDLLESA-GAAKAEVLI   73 (413)
T ss_dssp             CCSEEEEC-CSHHHHHHHHHHHH-TTCCEEE-EECCH--HHHHHHH----HTTCCCEESCTTCHHHHHHT-TTTTCSEEE
T ss_pred             CCeEEEEC-CCHHHHHHHHHHHH-CCCCEEE-EECCH--HHHHHHH----hCCCeEEEcCCCCHHHHHhc-CCCccCEEE
Confidence            36899999 69999999999874 6788874 56432  1122221    223433 3332  1222210 014789888


Q ss_pred             EccCchh-HHHHHHHHHHcCCc--EEEeCCCCCHHHHHHHHHHh
Q 031216          112 DFTDAST-VYDNVKQATAFGMR--SVVYVPHIQLETVSALSAFC  152 (163)
Q Consensus       112 DfT~p~~-~~~~~~~al~~G~~--vVigttg~~~e~~~~L~~~A  152 (163)
                      -++.... ....+..+.+.+.+  +|.  -..+.+....|.++.
T Consensus        74 v~~~~~~~n~~i~~~ar~~~p~~~Iia--ra~~~~~~~~L~~~G  115 (413)
T 3l9w_A           74 NAIDDPQTNLQLTEMVKEHFPHLQIIA--RARDVDHYIRLRQAG  115 (413)
T ss_dssp             ECCSSHHHHHHHHHHHHHHCTTCEEEE--EESSHHHHHHHHHTT
T ss_pred             ECCCChHHHHHHHHHHHHhCCCCeEEE--EECCHHHHHHHHHCC
Confidence            5553333 34555666666644  443  235566667776653

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=95.81  E-value=0.02  Score=43.98  Aligned_cols=105  Identities=17%  Similarity=0.178  Sum_probs=54.8

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcc-eeC---CHHHHHhcccccCCccEEE
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP-VMS---DLTMVLGSISQSKARAVVI  111 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~-v~~---~l~ell~~~~~~~~~DVVI  111 (163)
                      |||.|+| .|++|+.+++.+.+ .+.+++ ++|++.  ..+..+..   ..++. ++.   +.+.+...  .-.++|+||
T Consensus         1 M~iiIiG-~G~~G~~la~~L~~-~g~~v~-vid~~~--~~~~~l~~---~~~~~~i~gd~~~~~~l~~a--~i~~ad~vi   70 (218)
T 3l4b_C            1 MKVIIIG-GETTAYYLARSMLS-RKYGVV-IINKDR--ELCEEFAK---KLKATIIHGDGSHKEILRDA--EVSKNDVVV   70 (218)
T ss_dssp             CCEEEEC-CHHHHHHHHHHHHH-TTCCEE-EEESCH--HHHHHHHH---HSSSEEEESCTTSHHHHHHH--TCCTTCEEE
T ss_pred             CEEEEEC-CCHHHHHHHHHHHh-CCCeEE-EEECCH--HHHHHHHH---HcCCeEEEcCCCCHHHHHhc--CcccCCEEE
Confidence            5899999 59999999999875 578887 456432  11222211   11222 222   22222110  014899998


Q ss_pred             EccCchhHHHH-HHHHHH-cCCcEEEeCCCCCHHHHHHHHHH
Q 031216          112 DFTDASTVYDN-VKQATA-FGMRSVVYVPHIQLETVSALSAF  151 (163)
Q Consensus       112 DfT~p~~~~~~-~~~al~-~G~~vVigttg~~~e~~~~L~~~  151 (163)
                      -++..+..... +..+.+ .+..-++... .+++..+.|.++
T Consensus        71 ~~~~~d~~n~~~~~~a~~~~~~~~iia~~-~~~~~~~~l~~~  111 (218)
T 3l4b_C           71 ILTPRDEVNLFIAQLVMKDFGVKRVVSLV-NDPGNMEIFKKM  111 (218)
T ss_dssp             ECCSCHHHHHHHHHHHHHTSCCCEEEECC-CSGGGHHHHHHH
T ss_pred             EecCCcHHHHHHHHHHHHHcCCCeEEEEE-eCcchHHHHHHC
Confidence            55544443333 333443 4655455332 334455555444

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=95.81  E-value=0.017  Score=50.75  Aligned_cols=33  Identities=18%  Similarity=0.218  Sum_probs=26.5

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~   70 (163)
                      +.||+|+| .|.||..++..+. ..+++++ ++|++
T Consensus         5 ~~kVgVIG-aG~MG~~IA~~la-~aG~~V~-l~D~~   37 (483)
T 3mog_A            5 VQTVAVIG-SGTMGAGIAEVAA-SHGHQVL-LYDIS   37 (483)
T ss_dssp             CCCEEEEC-CSHHHHHHHHHHH-HTTCCEE-EECSC
T ss_pred             CCEEEEEC-cCHHHHHHHHHHH-HCCCeEE-EEECC
Confidence            45899999 5999999999987 4688876 46754

>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*

Probab=95.81  E-value=0.028  Score=45.67  Aligned_cols=34  Identities=18%  Similarity=0.157  Sum_probs=28.6

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~   69 (163)
                      +++|.|+|++|.+|+.+++.+.+ .+.+++++..+
T Consensus         9 ~~~vlVtGatG~iG~~l~~~L~~-~g~~V~~~~r~   42 (357)
T 1rkx_A            9 GKRVFVTGHTGFKGGWLSLWLQT-MGATVKGYSLT   42 (357)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESS
T ss_pred             CCEEEEECCCchHHHHHHHHHHh-CCCeEEEEeCC
Confidence            36899999999999999999985 57898876543

>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=95.79  E-value=0.033  Score=41.65  Aligned_cols=34  Identities=15%  Similarity=0.213  Sum_probs=27.2

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCc-EEEEEEe
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAID   68 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~-eLvgvid   68 (163)
                      ++||.|+|++|.+|+.+++.+.+.... ++.++..
T Consensus         5 ~~~vlVtGatG~iG~~l~~~l~~~g~~~~V~~~~r   39 (215)
T 2a35_A            5 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPAR   39 (215)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBS
T ss_pred             CceEEEECCCcHHHHHHHHHHHhCCCCCeEEEEeC
Confidence            468999999999999999999865432 7776543

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=95.76  E-value=0.022  Score=48.49  Aligned_cols=63  Identities=14%  Similarity=0.142  Sum_probs=44.2

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT  114 (163)
                      -.+|||+| .|+||+.+++.+. .-|+++.+ +|+...  . ....    ..++. +.++++++.      ..|+|+...
T Consensus       176 gktvGIIG-lG~IG~~vA~~l~-~fG~~V~~-~d~~~~--~-~~~~----~~g~~-~~~l~ell~------~aDvV~l~~  238 (365)
T 4hy3_A          176 GSEIGIVG-FGDLGKALRRVLS-GFRARIRV-FDPWLP--R-SMLE----ENGVE-PASLEDVLT------KSDFIFVVA  238 (365)
T ss_dssp             SSEEEEEC-CSHHHHHHHHHHT-TSCCEEEE-ECSSSC--H-HHHH----HTTCE-ECCHHHHHH------SCSEEEECS
T ss_pred             CCEEEEec-CCcccHHHHHhhh-hCCCEEEE-ECCCCC--H-HHHh----hcCee-eCCHHHHHh------cCCEEEEcC
Confidence            46899999 7999999999886 55899874 665321  1 1111    12333 569999986      899999654

>4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp}

Probab=95.75  E-value=0.021  Score=44.41  Aligned_cols=36  Identities=25%  Similarity=0.390  Sum_probs=28.8

Q ss_pred             CCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (163)
Q Consensus        33 ~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~   69 (163)
                      +++.++.|+|++|.+|+.+++.+.+..+..++. .++
T Consensus         2 ~~~k~vlITGas~gIG~~~a~~l~~~~g~~v~~-~~~   37 (244)
T 4e4y_A            2 NAMANYLVTGGSKGIGKAVVELLLQNKNHTVIN-IDI   37 (244)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHTTSTTEEEEE-EES
T ss_pred             CCCCeEEEeCCCChHHHHHHHHHHhcCCcEEEE-ecc
Confidence            346789999999999999999998767777764 453

>2qk4_A Trifunctional purine biosynthetic protein adenosi; purine synthesis, enzyme, protein-ATP complex, structural GE structural genomics consortium, SGC; HET: ATP; 2.45A {Homo sapiens}

Probab=95.73  E-value=0.064  Score=45.70  Aligned_cols=115  Identities=12%  Similarity=0.082  Sum_probs=57.0

Q ss_pred             CCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCC-Ccc-eeCCHHHHHhcccccCCcc
Q 031216           31 PPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPL-EIP-VMSDLTMVLGSISQSKARA  108 (163)
Q Consensus        31 ~~~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~-gi~-v~~~l~ell~~~~~~~~~D  108 (163)
                      |..+++||+|+| .|.-...+++.+.+..+++.+.+.+.. .+.  ..+.    .. .+. -+.|.+++++ +++..++|
T Consensus        20 ~~~m~~~IlIlG-~g~r~~al~~~~a~~~g~~~v~~~~~~-~~~--~~~~----~~~~~~~~~~d~~~l~~-~~~~~~~d   90 (452)
T 2qk4_A           20 FQSMAARVLIIG-SGGREHTLAWKLAQSHHVKQVLVAPGN-AGT--ACSE----KISNTAISISDHTALAQ-FCKEKKIE   90 (452)
T ss_dssp             --CCSEEEEEEE-CSHHHHHHHHHHTTCTTEEEEEEEECC-GGG--SBSS----SEEECCCCSSCHHHHHH-HHHHHTCC
T ss_pred             ccccCcEEEEEC-CCHHHHHHHHHHHhcCCCCEEEEECCC-hhh--hhhc----cccccccCCCCHHHHHH-HHHHcCCC
Confidence            333458999999 473233355666677788866554422 111  1110    10 111 1456666553 22235799


Q ss_pred             EEEEccCchhH--HHHHHHHHHcCCcEEEeCCC--CC-HHHHHHHHHHhhhcCe
Q 031216          109 VVIDFTDASTV--YDNVKQATAFGMRSVVYVPH--IQ-LETVSALSAFCDKASM  157 (163)
Q Consensus       109 VVIDfT~p~~~--~~~~~~al~~G~~vVigttg--~~-~e~~~~L~~~A~~~~V  157 (163)
                      +|+-.  ++..  ...+..+.+.|++++ |.+.  .. ..+....++++++.||
T Consensus        91 ~V~~~--~E~~~~~~~~~~l~~~gi~~~-g~~~~~~~~~~dK~~~k~~l~~~gi  141 (452)
T 2qk4_A           91 FVVVG--PEAPLAAGIVGNLRSAGVQCF-GPTAEAAQLESSKRFAKEFMDRHGI  141 (452)
T ss_dssp             EEEEC--SSHHHHTTHHHHHHHTTCCEE-SCCTTTTHHHHBHHHHHHHHHHTTC
T ss_pred             EEEEC--CcHHHHHHHHHHHHhcCCcEe-CcCHHHHHHhcCHHHHHHHHHHCCC
Confidence            88732  3332  245555567899864 4432  11 1223344455555443

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=95.67  E-value=0.033  Score=46.36  Aligned_cols=72  Identities=17%  Similarity=0.147  Sum_probs=46.0

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCc-EEEEEEecCCC---C--cchhhhcc-CCCCCCcceeCCHHHHHhcccccCC
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSHSV---G--EDIGMVCD-MEQPLEIPVMSDLTMVLGSISQSKA  106 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~-eLvgvid~~~~---g--~~~~~l~g-~~~~~gi~v~~~l~ell~~~~~~~~  106 (163)
                      +++||+|+|+ |.||..++..+... ++ + +.++|....   +  .+..+... ......+..++|+++++.      +
T Consensus         8 ~~~kI~VIGa-G~vG~~lA~~la~~-g~~~-V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~ea~~------~   78 (331)
T 1pzg_A            8 RRKKVAMIGS-GMIGGTMGYLCALR-ELAD-VVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALT------G   78 (331)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHH-TCCE-EEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHT------T
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhC-CCCe-EEEEECChhHHHHHHHHHHhhhhccCCCCEEEEeCCHHHHhC------C
Confidence            3579999996 99999999988754 54 7 667885431   1  11111110 001234555689987774      8


Q ss_pred             ccEEEEcc
Q 031216          107 RAVVIDFT  114 (163)
Q Consensus       107 ~DVVIDfT  114 (163)
                      +|+||...
T Consensus        79 aDiVi~a~   86 (331)
T 1pzg_A           79 ADCVIVTA   86 (331)
T ss_dssp             CSEEEECC
T ss_pred             CCEEEEcc
Confidence            99999654

>4fcc_A Glutamate dehydrogenase; protein complex, rossmann fold, metabolic role, NAD, NADP, oxidoreductase; 2.00A {Escherichia coli O157} PDB: 4fhn_X 2yfg_A 3sbo_A 2yfg_E

Probab=95.67  E-value=0.11  Score=45.46  Aligned_cols=115  Identities=14%  Similarity=0.170  Sum_probs=76.2

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhhccCC--------------CCCCcceeCCHH
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMVCDME--------------QPLEIPVMSDLT   95 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~-----~~g~~~~~l~g~~--------------~~~gi~v~~~l~   95 (163)
                      -.||+|-| +|++|...++.+. ..|.+++++.|+.     ..|.|..++.-+.              ...+.. +-+.+
T Consensus       235 Gk~vaVQG-~GnVG~~aa~~L~-e~GakvVavsD~~G~i~d~~Gid~e~l~~l~e~k~~~~g~v~~~~~~~g~~-~~~~~  311 (450)
T 4fcc_A          235 GMRVSVSG-SGNVAQYAIEKAM-EFGARVITASDSSGTVVDESGFTKEKLARLIEIKSSRDGRVADYAKEFGLV-YLEGQ  311 (450)
T ss_dssp             TCEEEEEC-CSHHHHHHHHHHH-HTTCEEEEEEETTEEEECTTCCCHHHHHHHHHHHTSTTCCHHHHHHHHTCE-EEETC
T ss_pred             CCEEEEeC-CChHHHHHHHHHH-hcCCeEEEEecCCceEEeCCCCCHHHHHHHHHHhcccCCccccccccCCcE-EecCc
Confidence            47899999 7999999999887 5799999998853     4455443322110              001111 12334


Q ss_pred             HHHhcccccCCccEEEEccCchhH-HHHHHHHHHcCCcEEEeCC--CCCHHHHHHHHHHhhhcCeEEcC
Q 031216           96 MVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMVSTG  161 (163)
Q Consensus        96 ell~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigtt--g~~~e~~~~L~~~A~~~~Vv~tg  161 (163)
                      +++.     .++|+++=+...... .+++......|+.+|++-.  ..+++..+.|    ++.+|+|.+
T Consensus       312 ~i~~-----~~~DI~iPcAl~~~I~~~~a~~L~a~g~k~IaEgAN~p~t~eA~~iL----~~rGIl~~P  371 (450)
T 4fcc_A          312 QPWS-----VPVDIALPCATQNELDVDAAHQLIANGVKAVAEGANMPTTIEATELF----QQAGVLFAP  371 (450)
T ss_dssp             CGGG-----SCCSEEEECSCTTCBCHHHHHHHHHTTCCEEECCSSSCBCHHHHHHH----HHTTCEEEC
T ss_pred             cccc-----CCccEEeeccccccccHHHHHHHHhcCceEEecCCCCCCCHHHHHHH----HHCCCEEEC
Confidence            5555     589999976655444 6888888889999999844  4566654433    457788754

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=95.65  E-value=0.0076  Score=48.81  Aligned_cols=99  Identities=9%  Similarity=-0.019  Sum_probs=54.6

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT  114 (163)
                      ++||+|+| .|.||..++..+.+. +.++. ++++...+.+.....|   .....+..+..+.+.     .++|+||-++
T Consensus         2 ~mkI~iiG-aGa~G~~~a~~L~~~-g~~V~-~~~r~~~~~~~~~~~g---~~~~~~~~~~~~~~~-----~~~D~vilav   70 (294)
T 3g17_A            2 SLSVAIIG-PGAVGTTIAYELQQS-LPHTT-LIGRHAKTITYYTVPH---APAQDIVVKGYEDVT-----NTFDVIIIAV   70 (294)
T ss_dssp             -CCEEEEC-CSHHHHHHHHHHHHH-CTTCE-EEESSCEEEEEESSTT---SCCEEEEEEEGGGCC-----SCEEEEEECS
T ss_pred             CcEEEEEC-CCHHHHHHHHHHHHC-CCeEE-EEEeccCcEEEEecCC---eeccceecCchHhcC-----CCCCEEEEeC
Confidence            47999999 599999999988753 45555 3454322211111001   011223333333332     3899999677


Q ss_pred             CchhHHHHHHH---HHHcCCcEEEeCCCCCHHH
Q 031216          115 DASTVYDNVKQ---ATAFGMRSVVYVPHIQLET  144 (163)
Q Consensus       115 ~p~~~~~~~~~---al~~G~~vVigttg~~~e~  144 (163)
                      .|....+.+..   .+..+..+|+-.-|+..++
T Consensus        71 k~~~~~~~l~~l~~~l~~~~~iv~~~nGi~~~~  103 (294)
T 3g17_A           71 KTHQLDAVIPHLTYLAHEDTLIILAQNGYGQLE  103 (294)
T ss_dssp             CGGGHHHHGGGHHHHEEEEEEEEECCSSCCCGG
T ss_pred             CccCHHHHHHHHHHhhCCCCEEEEeccCcccHh
Confidence            66655554433   3334556666556876554

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=95.65  E-value=0.015  Score=47.91  Aligned_cols=93  Identities=14%  Similarity=0.149  Sum_probs=53.3

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhc--cCC-------CCCCcceeCCHHHHHhcccccC
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC--DME-------QPLEIPVMSDLTMVLGSISQSK  105 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~--g~~-------~~~gi~v~~~l~ell~~~~~~~  105 (163)
                      ++||+|+| .|.||..++..+.+ .+.++.. +++..   ....+.  |..       ....+..+++++++       .
T Consensus         3 ~mkI~IiG-aG~~G~~~a~~L~~-~g~~V~~-~~r~~---~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-------~   69 (335)
T 3ghy_A            3 LTRICIVG-AGAVGGYLGARLAL-AGEAINV-LARGA---TLQALQTAGLRLTEDGATHTLPVRATHDAAAL-------G   69 (335)
T ss_dssp             CCCEEEES-CCHHHHHHHHHHHH-TTCCEEE-ECCHH---HHHHHHHTCEEEEETTEEEEECCEEESCHHHH-------C
T ss_pred             CCEEEEEC-cCHHHHHHHHHHHH-CCCEEEE-EEChH---HHHHHHHCCCEEecCCCeEEEeeeEECCHHHc-------C
Confidence            47999999 59999999999875 4666654 44321   111110  100       01123446788764       3


Q ss_pred             CccEEEEccCchhHHHHHHHH---HHcCCcEEEeCCCC
Q 031216          106 ARAVVIDFTDASTVYDNVKQA---TAFGMRSVVYVPHI  140 (163)
Q Consensus       106 ~~DVVIDfT~p~~~~~~~~~a---l~~G~~vVigttg~  140 (163)
                      ++|+||.++.+....+.+...   +..+..+|.-..|+
T Consensus        70 ~~D~Vilavk~~~~~~~~~~l~~~l~~~~~iv~~~nGi  107 (335)
T 3ghy_A           70 EQDVVIVAVKAPALESVAAGIAPLIGPGTCVVVAMNGV  107 (335)
T ss_dssp             CCSEEEECCCHHHHHHHHGGGSSSCCTTCEEEECCSSS
T ss_pred             CCCEEEEeCCchhHHHHHHHHHhhCCCCCEEEEECCCC
Confidence            899999555554444443322   23456666655574

>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*

Probab=95.64  E-value=0.074  Score=44.58  Aligned_cols=95  Identities=13%  Similarity=0.108  Sum_probs=58.2

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC----------------CCcc-h---h-hhccCCCCCCccee-C
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS----------------VGED-I---G-MVCDMEQPLEIPVM-S   92 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~----------------~g~~-~---~-~l~g~~~~~gi~v~-~   92 (163)
                      ..||.|+| .|..|..+++.+. ..|+.=+-++|.+.                .|+. +   . .+..+.....+..+ .
T Consensus        36 ~~~VlivG-~GGlG~~ia~~La-~~Gvg~itlvD~d~V~~sNL~rq~~~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~~  113 (346)
T 1y8q_A           36 ASRVLLVG-LKGLGAEIAKNLI-LAGVKGLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAEASLERAQNLNPMVDVKVDTE  113 (346)
T ss_dssp             TCEEEEEC-CSHHHHHHHHHHH-HHTCSEEEEECCCBCCSSCGGGCTTSCSSCTTSBHHHHHHHHHHHTCTTSEEEEECS
T ss_pred             CCeEEEEC-CCHHHHHHHHHHH-HcCCCEEEEEECCCcchhhCCCCCccccccCcCCHHHHHHHHHHhHCCCeEEEEEec
Confidence            36899999 5999999999988 56886666888421                1111 0   0 00001001112222 2


Q ss_pred             C----HHHHHhcccccCCccEEEEccCchhH-HHHHHHHHHcCCcEEEeC
Q 031216           93 D----LTMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYV  137 (163)
Q Consensus        93 ~----l~ell~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigt  137 (163)
                      +    .++.+.      .+|+|||++.+... ...-..|.+.++++|.+-
T Consensus       114 ~~~~~~~~~~~------~~dvVv~~~d~~~~r~~ln~~~~~~~ip~i~~~  157 (346)
T 1y8q_A          114 DIEKKPESFFT------QFDAVCLTCCSRDVIVKVDQICHKNSIKFFTGD  157 (346)
T ss_dssp             CGGGCCHHHHT------TCSEEEEESCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             ccCcchHHHhc------CCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEe
Confidence            2    345553      89999998855444 556678889999999653

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=95.63  E-value=0.047  Score=44.85  Aligned_cols=98  Identities=19%  Similarity=0.162  Sum_probs=52.0

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcce--eCCHHHHHhcccccCCccEEEEc
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV--MSDLTMVLGSISQSKARAVVIDF  113 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v--~~~l~ell~~~~~~~~~DVVIDf  113 (163)
                      -+|.|+|++|.+|+.+++.+. ..+.+++++..+... .+...-+|.  ..-+..  ..++.+.+.+.... .+|+|||+
T Consensus       171 ~~vlV~Ga~ggiG~~~~~~a~-~~Ga~V~~~~~~~~~-~~~~~~~g~--~~~~d~~~~~~~~~~~~~~~~~-~~D~vi~~  245 (347)
T 2hcy_A          171 HWVAISGAAGGLGSLAVQYAK-AMGYRVLGIDGGEGK-EELFRSIGG--EVFIDFTKEKDIVGAVLKATDG-GAHGVINV  245 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHH-HTTCEEEEEECSTTH-HHHHHHTTC--CEEEETTTCSCHHHHHHHHHTS-CEEEEEEC
T ss_pred             CEEEEECCCchHHHHHHHHHH-HCCCcEEEEcCCHHH-HHHHHHcCC--ceEEecCccHhHHHHHHHHhCC-CCCEEEEC
Confidence            579999988999999998876 457887765433211 111111121  000000  12444444321112 69999998


Q ss_pred             cCchhHHHHHHHHHH-cCCcEEEeCC
Q 031216          114 TDASTVYDNVKQATA-FGMRSVVYVP  138 (163)
Q Consensus       114 T~p~~~~~~~~~al~-~G~~vVigtt  138 (163)
                      +-.....+.+..+++ .|.-+.+|.+
T Consensus       246 ~g~~~~~~~~~~~l~~~G~iv~~g~~  271 (347)
T 2hcy_A          246 SVSEAAIEASTRYVRANGTTVLVGMP  271 (347)
T ss_dssp             SSCHHHHHHHTTSEEEEEEEEECCCC
T ss_pred             CCcHHHHHHHHHHHhcCCEEEEEeCC
Confidence            764444444444444 3444445544

>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A

Probab=95.63  E-value=0.037  Score=50.06  Aligned_cols=98  Identities=12%  Similarity=0.138  Sum_probs=59.5

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC----------------CCcc----hhhhc-cCCCCCCccee--
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS----------------VGED----IGMVC-DMEQPLEIPVM--   91 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~----------------~g~~----~~~l~-g~~~~~gi~v~--   91 (163)
                      ..||.|+| .|..|..+++.+. ..|+.=..++|.+.                .|+.    +.+.+ .+.....+..+  
T Consensus       327 ~~kVLIVG-aGGLGs~va~~La-~aGVG~ItLvD~D~Ve~SNL~RQ~L~~~~DvG~~KAeaaa~~L~~iNP~v~v~~~~~  404 (598)
T 3vh1_A          327 NTKVLLLG-AGTLGCYVSRALI-AWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDATGVKL  404 (598)
T ss_dssp             TCEEEEEC-CSHHHHHHHHHHH-TTTCCEEEEECCSBCCTTSTTTSTTCCSTTCSSBHHHHHHHHHHHHCTTCEEEEECC
T ss_pred             CCeEEEEC-CCHHHHHHHHHHH-HcCCCEEEEECCCcccccccccccccchhhcCcHHHHHHHHHHHhHCCCcEEEEEec
Confidence            46899999 5999999999987 57887777888431                1111    00000 00001111111  


Q ss_pred             -------------------CCHHHHHhcccccCCccEEEEccCchhH-HHHHHHHHHcCCcEEEeCCCC
Q 031216           92 -------------------SDLTMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVPHI  140 (163)
Q Consensus        92 -------------------~~l~ell~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigttg~  140 (163)
                                         +++++++.      +.|+|||++..-.. ...-..|.++++++|.+.-|+
T Consensus       405 ~I~~pgh~i~~~~~~~l~~~~l~~li~------~~DvVvdatDn~~tR~lin~~c~~~~~plI~aa~G~  467 (598)
T 3vh1_A          405 SIPMIGHKLVNEEAQHKDFDRLRALIK------EHDIIFLLVDSRESRWLPSLLSNIENKTVINAALGF  467 (598)
T ss_dssp             CCCCSSCCCCSHHHHHHHHHHHHHHHH------HCSEEEECCSBGGGTHHHHHHHHHTTCEEEEEEECS
T ss_pred             cccccCcccccccccccCHHHHHHHHh------cCCEEEECCCCHHHHHHHHHHHHhcCCCEEEEEECC
Confidence                               12234553      78999999854444 556678889999988764453

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=95.63  E-value=0.027  Score=47.83  Aligned_cols=107  Identities=13%  Similarity=0.159  Sum_probs=66.6

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEc
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDf  113 (163)
                      .-.+|+|.| .|++|+.+++.+. .-+++++ +.|+...  + .++..   ..+.. +-+.++++.     .+.|+++-+
T Consensus       174 ~GktV~I~G-~GnVG~~~A~~l~-~~GakVv-vsD~~~~--~-~~~a~---~~ga~-~v~~~ell~-----~~~DIliP~  238 (355)
T 1c1d_A          174 DGLTVLVQG-LGAVGGSLASLAA-EAGAQLL-VADTDTE--R-VAHAV---ALGHT-AVALEDVLS-----TPCDVFAPC  238 (355)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHH-HTTCEEE-EECSCHH--H-HHHHH---HTTCE-ECCGGGGGG-----CCCSEEEEC
T ss_pred             CCCEEEEEC-cCHHHHHHHHHHH-HCCCEEE-EEeCCcc--H-HHHHH---hcCCE-EeChHHhhc-----CccceecHh
Confidence            347899999 7999999999887 4589999 8886421  1 11111   12332 236677775     489998855


Q ss_pred             cCchhH-HHHHHHHHHcCCcEEEeCCC--CCHHHHHHHHHHhhhcCeEEcC
Q 031216          114 TDASTV-YDNVKQATAFGMRSVVYVPH--IQLETVSALSAFCDKASMVSTG  161 (163)
Q Consensus       114 T~p~~~-~~~~~~al~~G~~vVigttg--~~~e~~~~L~~~A~~~~Vv~tg  161 (163)
                      .+.+.. .+.+.   .-+..+|++...  +++++.   .++-++.+|++.+
T Consensus       239 A~~~~I~~~~~~---~lk~~iVie~AN~p~t~~eA---~~~L~~~gIlv~P  283 (355)
T 1c1d_A          239 AMGGVITTEVAR---TLDCSVVAGAANNVIADEAA---SDILHARGILYAP  283 (355)
T ss_dssp             SCSCCBCHHHHH---HCCCSEECCSCTTCBCSHHH---HHHHHHTTCEECC
T ss_pred             HHHhhcCHHHHh---hCCCCEEEECCCCCCCCHHH---HHHHHhCCEEEEC
Confidence            544433 34443   336788888773  343332   2445666777754

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=95.62  E-value=0.034  Score=46.84  Aligned_cols=82  Identities=21%  Similarity=0.139  Sum_probs=51.8

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT  114 (163)
                      -.+|+|+| .|+||+.+++.+.. -|+++.+ +|+...  +  ..     ..++ -+.++++++.      ..|+|+...
T Consensus       148 gktvgIiG-lG~IG~~vA~~l~~-~G~~V~~-~d~~~~--~--~~-----~~~~-~~~~l~ell~------~aDvV~l~~  208 (343)
T 2yq5_A          148 NLTVGLIG-VGHIGSAVAEIFSA-MGAKVIA-YDVAYN--P--EF-----EPFL-TYTDFDTVLK------EADIVSLHT  208 (343)
T ss_dssp             GSEEEEEC-CSHHHHHHHHHHHH-TTCEEEE-ECSSCC--G--GG-----TTTC-EECCHHHHHH------HCSEEEECC
T ss_pred             CCeEEEEe-cCHHHHHHHHHHhh-CCCEEEE-ECCChh--h--hh-----hccc-cccCHHHHHh------cCCEEEEcC
Confidence            46899999 79999999999874 5899874 565321  1  11     1122 2459999986      899998655


Q ss_pred             C--chhH---HHHHHHHHHcCCcEEE
Q 031216          115 D--ASTV---YDNVKQATAFGMRSVV  135 (163)
Q Consensus       115 ~--p~~~---~~~~~~al~~G~~vVi  135 (163)
                      +  |+..   .......++.|.-+|-
T Consensus       209 Plt~~t~~li~~~~l~~mk~gailIN  234 (343)
T 2yq5_A          209 PLFPSTENMIGEKQLKEMKKSAYLIN  234 (343)
T ss_dssp             CCCTTTTTCBCHHHHHHSCTTCEEEE
T ss_pred             CCCHHHHHHhhHHHHhhCCCCcEEEE
Confidence            3  2221   1333344555655554

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=95.61  E-value=0.049  Score=46.83  Aligned_cols=87  Identities=21%  Similarity=0.136  Sum_probs=52.9

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC--CcchhhhccCCCCCCccee--CCHHHHHhcccccCCccEE
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV--GEDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAVV  110 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~--g~~~~~l~g~~~~~gi~v~--~~l~ell~~~~~~~~~DVV  110 (163)
                      ..||.|+| .|+.|...++.+. ..|.++.+ .|....  ......+.    ..|++++  .+.++.+.     ..+|+|
T Consensus         9 ~k~v~viG-~G~sG~s~A~~l~-~~G~~V~~-~D~~~~~~~~~~~~L~----~~gi~~~~g~~~~~~~~-----~~~d~v   76 (451)
T 3lk7_A            9 NKKVLVLG-LARSGEAAARLLA-KLGAIVTV-NDGKPFDENPTAQSLL----EEGIKVVCGSHPLELLD-----EDFCYM   76 (451)
T ss_dssp             TCEEEEEC-CTTTHHHHHHHHH-HTTCEEEE-EESSCGGGCHHHHHHH----HTTCEEEESCCCGGGGG-----SCEEEE
T ss_pred             CCEEEEEe-eCHHHHHHHHHHH-hCCCEEEE-EeCCcccCChHHHHHH----hCCCEEEECCChHHhhc-----CCCCEE
Confidence            46899999 5999999887776 67899885 674321  11111221    3466665  23344443     138988


Q ss_pred             EEcc-CchhHHHHHHHHHHcCCcEE
Q 031216          111 IDFT-DASTVYDNVKQATAFGMRSV  134 (163)
Q Consensus       111 IDfT-~p~~~~~~~~~al~~G~~vV  134 (163)
                      |-.+ .|... +.+..+.+.|++|+
T Consensus        77 v~spgi~~~~-p~~~~a~~~gi~v~  100 (451)
T 3lk7_A           77 IKNPGIPYNN-PMVKKALEKQIPVL  100 (451)
T ss_dssp             EECTTSCTTS-HHHHHHHHTTCCEE
T ss_pred             EECCcCCCCC-hhHHHHHHCCCcEE
Confidence            8332 34333 44677788888875

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=95.60  E-value=0.024  Score=48.25  Aligned_cols=90  Identities=19%  Similarity=0.237  Sum_probs=52.9

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCc-EEEEEEecCCCCcchhhhccCCCCCCcc--eeCCHHHHHhcccccCCccEEE
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSHSVGEDIGMVCDMEQPLEIP--VMSDLTMVLGSISQSKARAVVI  111 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~-eLvgvid~~~~g~~~~~l~g~~~~~gi~--v~~~l~ell~~~~~~~~~DVVI  111 (163)
                      ..+|+|+|+ |.||+.+++.+... |+ ++. +++++.  .+..++..   ..+..  -++++++++.      .+|+||
T Consensus       167 g~~VlIiGa-G~iG~~~a~~l~~~-G~~~V~-v~~r~~--~ra~~la~---~~g~~~~~~~~l~~~l~------~aDvVi  232 (404)
T 1gpj_A          167 DKTVLVVGA-GEMGKTVAKSLVDR-GVRAVL-VANRTY--ERAVELAR---DLGGEAVRFDELVDHLA------RSDVVV  232 (404)
T ss_dssp             TCEEEEESC-CHHHHHHHHHHHHH-CCSEEE-EECSSH--HHHHHHHH---HHTCEECCGGGHHHHHH------TCSEEE
T ss_pred             CCEEEEECh-HHHHHHHHHHHHHC-CCCEEE-EEeCCH--HHHHHHHH---HcCCceecHHhHHHHhc------CCCEEE
Confidence            468999995 99999999998754 77 555 566542  12112211   11221  1357777774      899999


Q ss_pred             EccCchhH---HHHHHH-HHH---cCCcEEEeCC
Q 031216          112 DFTDASTV---YDNVKQ-ATA---FGMRSVVYVP  138 (163)
Q Consensus       112 DfT~p~~~---~~~~~~-al~---~G~~vVigtt  138 (163)
                      ++|.....   .+.+.. +++   .+.-++++..
T Consensus       233 ~at~~~~~~~~~~~l~~~~lk~r~~~~~v~vdia  266 (404)
T 1gpj_A          233 SATAAPHPVIHVDDVREALRKRDRRSPILIIDIA  266 (404)
T ss_dssp             ECCSSSSCCBCHHHHHHHHHHCSSCCCEEEEECC
T ss_pred             EccCCCCceecHHHHHHHHHhccCCCCEEEEEcc
Confidence            98743222   144444 343   2455666653

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}

Probab=95.60  E-value=0.22  Score=41.30  Aligned_cols=88  Identities=18%  Similarity=0.282  Sum_probs=52.8

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCcc---EEEE
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA---VVID  112 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~D---VVID  112 (163)
                      ..+.|+|++|.+|+.+++.+. ..+.+++.+..+.....   ++           ...++++.+++. .....   +..|
T Consensus        46 k~vlVTGas~GIG~aia~~La-~~Ga~Vvl~~r~~~~~~---~l-----------~~~l~~~~~~~~-~~g~~~~~~~~D  109 (346)
T 3kvo_A           46 CTVFITGASRGIGKAIALKAA-KDGANIVIAAKTAQPHP---KL-----------LGTIYTAAEEIE-AVGGKALPCIVD  109 (346)
T ss_dssp             CEEEEETTTSHHHHHHHHHHH-TTTCEEEEEESCCSCCS---SS-----------CCCHHHHHHHHH-HTTCEEEEEECC
T ss_pred             CEEEEeCCChHHHHHHHHHHH-HCCCEEEEEECChhhhh---hh-----------HHHHHHHHHHHH-hcCCeEEEEEcc
Confidence            569999999999999999998 46888775543321111   10           011222111100 01222   2357


Q ss_pred             ccCchhHHHHHHHHHHc--CCcEEEeCCC
Q 031216          113 FTDASTVYDNVKQATAF--GMRSVVYVPH  139 (163)
Q Consensus       113 fT~p~~~~~~~~~al~~--G~~vVigttg  139 (163)
                      .+.++...+.+..+.+.  ++.+|+-..|
T Consensus       110 v~d~~~v~~~~~~~~~~~g~iDilVnnAG  138 (346)
T 3kvo_A          110 VRDEQQISAAVEKAIKKFGGIDILVNNAS  138 (346)
T ss_dssp             TTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             CCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            88888887777766665  7888876654

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=95.55  E-value=0.02  Score=43.96  Aligned_cols=33  Identities=24%  Similarity=0.282  Sum_probs=27.1

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid   68 (163)
                      |.+|.|+|++|.+|+.+++.+.+ .+.+++++..
T Consensus         1 Mk~vlVtGasg~iG~~l~~~L~~-~g~~V~~~~r   33 (255)
T 2dkn_A            1 MSVIAITGSASGIGAALKELLAR-AGHTVIGIDR   33 (255)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHH-TTCEEEEEES
T ss_pred             CcEEEEeCCCcHHHHHHHHHHHh-CCCEEEEEeC
Confidence            45799999999999999999985 5788876543

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=95.54  E-value=0.046  Score=41.95  Aligned_cols=31  Identities=29%  Similarity=0.386  Sum_probs=25.9

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEE
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgv   66 (163)
                      +.++.|+|++|.+|+.+++.+.+ .+.+++..
T Consensus         2 ~k~vlITGas~gIG~~ia~~l~~-~G~~V~~~   32 (235)
T 3l77_A            2 MKVAVITGASRGIGEAIARALAR-DGYALALG   32 (235)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHH-TTCEEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHH-CCCEEEEE
Confidence            45799999999999999999984 67886644

>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}

Probab=95.53  E-value=0.013  Score=46.72  Aligned_cols=57  Identities=25%  Similarity=0.221  Sum_probs=27.7

Q ss_pred             cccccccccccceeeeccCCCCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216           11 RMHHISQNVKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (163)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~   69 (163)
                      +-||-.|+-+.++=++...-..-...++.|+|++|.+|+.+++.+.+ .+.+++. +++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~m~~l~gk~vlVTGas~gIG~aia~~la~-~G~~V~~-~~r   60 (266)
T 3uxy_A            4 HHHHSSGVDLGTENLYFQSMQGFEGKVALVTGAAGGIGGAVVTALRA-AGARVAV-ADR   60 (266)
T ss_dssp             ----------------------CTTCEEEESSTTSHHHHHHHHHHHH-TTCEEEE-CSS
T ss_pred             cccCCCCCCCCCCCcchhhhhCCCCCEEEEeCCCcHHHHHHHHHHHH-CCCEEEE-EeC
Confidence            44566666666655554433333346799999999999999999984 6888764 454

>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*

Probab=95.52  E-value=0.021  Score=46.99  Aligned_cols=33  Identities=24%  Similarity=0.278  Sum_probs=28.1

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~   69 (163)
                      .+|.|+|++|.+|+.+++.+.+ .+.+++++..+
T Consensus        29 k~vlVtGatG~IG~~l~~~L~~-~g~~V~~~~r~   61 (381)
T 1n7h_A           29 KIALITGITGQDGSYLTEFLLG-KGYEVHGLIRR   61 (381)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEEEECC
T ss_pred             CeEEEEcCCchHHHHHHHHHHH-CCCEEEEEecC
Confidence            5899999999999999999985 57898876543

>3r3j_A Glutamate dehydrogenase; rossman fold, oxidoreductase, apicoplast; 3.10A {Plasmodium falciparum}

Probab=95.51  E-value=0.053  Score=47.59  Aligned_cols=116  Identities=9%  Similarity=0.076  Sum_probs=77.6

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec-----CCCCcchhhhccC---C----C--------CCCcceeCC
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-----HSVGEDIGMVCDM---E----Q--------PLEIPVMSD   93 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~-----~~~g~~~~~l~g~---~----~--------~~gi~v~~~   93 (163)
                      +..||+|-| .|++|...++.+.+ .+.+++++.|+     .+.|-|..++.-+   .    .        ..+...+ +
T Consensus       238 ~g~~VaVQG-~GnVG~~aa~~L~e-~GakvVavsD~~G~iyd~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~~~a~~v-~  314 (456)
T 3r3j_A          238 ENKKCLVSG-SGNVAQYLVEKLIE-KGAIVLTMSDSNGYILEPNGFTKEQLNYIMDIKNNQRLRLKEYLKYSKTAKYF-E  314 (456)
T ss_dssp             TTCCEEEEC-CSHHHHHHHHHHHH-HTCCBCCEECSSCEEECTTCCCHHHHHHHHHHHHTSCCCGGGGGGTCSSCEEE-C
T ss_pred             cCCEEEEEC-CCHHHHHHHHHHHH-CCCEEEEEECCCCcEECCCCCCHHHHHHHHHHHHhcCcchhhhhhcCCCceEe-C
Confidence            347899999 79999999998874 68999999995     2456655444210   0    0        0122222 3


Q ss_pred             HHHHHhcccccCCccEEEEccCchhH-HHHHHHHHHcCCcEEEeCC--CCCHHHHHHHHHHhhhcCeEEcC
Q 031216           94 LTMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMVSTG  161 (163)
Q Consensus        94 l~ell~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigtt--g~~~e~~~~L~~~A~~~~Vv~tg  161 (163)
                      .++++.     .++|+++=+...... .+++....+.+..+|+|-.  .++++..+    .-++.+|++.+
T Consensus       315 ~~~i~~-----~~~DI~iPcA~~~~I~~~na~~l~~~~ak~V~EgAN~p~T~eA~~----iL~~rGI~~~P  376 (456)
T 3r3j_A          315 NQKPWN-----IPCDIAFPCATQNEINENDADLFIQNKCKMIVEGANMPTHIKALH----KLKQNNIILCP  376 (456)
T ss_dssp             SCCGGG-----SCCSEEEECSCTTCBCHHHHHHHHHHTCCEEECCSSSCBCTTHHH----HHHTTTCEEEC
T ss_pred             Cccccc-----cCccEEEeCCCccchhhHHHHHHHhcCCeEEEecCCCCCCHHHHH----HHHHCCCEEeC
Confidence            356665     589999977766555 6788887788999999876  34555433    33456777653

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=95.50  E-value=0.032  Score=51.25  Aligned_cols=37  Identities=22%  Similarity=0.192  Sum_probs=28.8

Q ss_pred             CCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 031216           31 PPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (163)
Q Consensus        31 ~~~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~   70 (163)
                      ++..+.||+|+| .|.||..++..+. ..+++++ ++|++
T Consensus       308 ~~~~~~kV~VIG-aG~MG~~iA~~la-~aG~~V~-l~D~~  344 (725)
T 2wtb_A          308 VPRKIKKVAIIG-GGLMGSGIATALI-LSNYPVI-LKEVN  344 (725)
T ss_dssp             CCCCCCCEEEEC-CSHHHHHHHHHHH-TTTCCEE-EECSS
T ss_pred             ccccCcEEEEEc-CCHhhHHHHHHHH-hCCCEEE-EEECC
Confidence            344567899999 5999999999887 4688876 46743

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=95.46  E-value=0.028  Score=44.81  Aligned_cols=34  Identities=21%  Similarity=0.265  Sum_probs=27.7

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~   69 (163)
                      ..++.|+|++|.+|+.+++.+. ..|.+++...++
T Consensus        31 gk~~lVTGas~GIG~aia~~la-~~G~~V~~~~~~   64 (271)
T 3v2g_A           31 GKTAFVTGGSRGIGAAIAKRLA-LEGAAVALTYVN   64 (271)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESS
T ss_pred             CCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEeCC
Confidence            3579999999999999999998 468887755443

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=95.38  E-value=0.054  Score=45.22  Aligned_cols=31  Identities=26%  Similarity=0.350  Sum_probs=26.0

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~   69 (163)
                      -||+|+| +|-||+.++.... ..|++++ ++|.
T Consensus         7 ~~VaViG-aG~MG~giA~~~a-~~G~~V~-l~D~   37 (319)
T 3ado_A            7 GDVLIVG-SGLVGRSWAMLFA-SGGFRVK-LYDI   37 (319)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHH-HTTCCEE-EECS
T ss_pred             CeEEEEC-CcHHHHHHHHHHH-hCCCeEE-EEEC
Confidence            4899999 5999999998876 5799877 6774

>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}

Probab=95.33  E-value=0.028  Score=47.01  Aligned_cols=62  Identities=19%  Similarity=0.142  Sum_probs=42.7

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT  114 (163)
                      ..++||+| +|++|+.+++.+. .=++++.+ +|+..  .+...      ..++ .+.++++++.      ..|+|+...
T Consensus       141 g~tvGIiG-~G~IG~~va~~~~-~fg~~v~~-~d~~~--~~~~~------~~~~-~~~~l~ell~------~sDivslh~  202 (334)
T 3kb6_A          141 RLTLGVIG-TGRIGSRVAMYGL-AFGMKVLC-YDVVK--REDLK------EKGC-VYTSLDELLK------ESDVISLHV  202 (334)
T ss_dssp             GSEEEEEC-CSHHHHHHHHHHH-HTTCEEEE-ECSSC--CHHHH------HTTC-EECCHHHHHH------HCSEEEECC
T ss_pred             CcEEEEEC-cchHHHHHHHhhc-ccCceeee-cCCcc--chhhh------hcCc-eecCHHHHHh------hCCEEEEcC
Confidence            46899999 7999999999886 56899875 56432  11111      1122 3578999986      788887554

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=95.31  E-value=0.051  Score=43.56  Aligned_cols=59  Identities=25%  Similarity=0.312  Sum_probs=27.1

Q ss_pred             eecccccccccccceeeeccCCCCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216            9 HCRMHHISQNVKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (163)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~   69 (163)
                      |-|-||-|.+-+--+=+++..-.......+.|+|++|.+|+.+++.+.+ .+.+++. +++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~m~~~~~k~~lVTGas~GIG~aia~~la~-~G~~V~~-~~r   60 (283)
T 3v8b_A            2 HHHHHHSSGVDLGTENLYFQSMMNQPSPVALITGAGSGIGRATALALAA-DGVTVGA-LGR   60 (283)
T ss_dssp             -------------------------CCCEEEEESCSSHHHHHHHHHHHH-TTCEEEE-EES
T ss_pred             CCccCCccccccccchhhhhhhcCCCCCEEEEECCCCHHHHHHHHHHHH-CCCEEEE-EeC
Confidence            4455666655443332333222222235699999999999999999884 5888775 444

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}

Probab=95.31  E-value=0.02  Score=49.04  Aligned_cols=60  Identities=17%  Similarity=0.126  Sum_probs=42.5

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT  114 (163)
                      -.+|||+| .|+||+.+++.+. .-|+++.+ +|+...     . .    . ....+.++++++.      ..|+|+..+
T Consensus       119 gktvGIIG-lG~IG~~vA~~l~-a~G~~V~~-~d~~~~-----~-~----~-~~~~~~sl~ell~------~aDiV~l~~  178 (381)
T 3oet_A          119 DRTIGIVG-VGNVGSRLQTRLE-ALGIRTLL-CDPPRA-----A-R----G-DEGDFRTLDELVQ------EADVLTFHT  178 (381)
T ss_dssp             GCEEEEEC-CSHHHHHHHHHHH-HTTCEEEE-ECHHHH-----H-T----T-CCSCBCCHHHHHH------HCSEEEECC
T ss_pred             CCEEEEEe-ECHHHHHHHHHHH-HCCCEEEE-ECCChH-----H-h----c-cCcccCCHHHHHh------hCCEEEEcC
Confidence            36899999 7999999999987 45899885 464210     0 0    0 1113578999986      799988555

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=95.30  E-value=0.029  Score=46.33  Aligned_cols=72  Identities=17%  Similarity=0.112  Sum_probs=42.7

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCC-cEEEEEEecCCCCcchhhhccCCCCCCccee---CCHHHHHhcccccCCccEEE
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARG-MEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM---SDLTMVLGSISQSKARAVVI  111 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~-~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~---~~l~ell~~~~~~~~~DVVI  111 (163)
                      +||+|+|++|.+|..++..+....- -+| .++|....-..+.++.....+..+..+   +|+++++.      .+|+||
T Consensus         1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev-~L~Di~~~~~~a~dL~~~~~~~~l~~~~~t~d~~~a~~------~aDvVv   73 (314)
T 1mld_A            1 AKVAVLGASGGIGQPLSLLLKNSPLVSRL-TLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLK------GCDVVV   73 (314)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEE-EEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHT------TCSEEE
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCcEE-EEEeCCccHHHHHHHhccCcCceEEEecCCCCHHHHhC------CCCEEE
Confidence            5999999779999999988875432 344 467854310111222211111123332   47888774      899988


Q ss_pred             Ecc
Q 031216          112 DFT  114 (163)
Q Consensus       112 DfT  114 (163)
                      ...
T Consensus        74 i~a   76 (314)
T 1mld_A           74 IPA   76 (314)
T ss_dssp             ECC
T ss_pred             ECC
Confidence            543

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=95.27  E-value=0.16  Score=40.27  Aligned_cols=109  Identities=13%  Similarity=0.092  Sum_probs=53.5

Q ss_pred             ccccccccccceeeeccCCCCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcce-
Q 031216           12 MHHISQNVKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-   90 (163)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v-   90 (163)
                      -||-|-.....+|+--.-+-  ...||.|+| .|.+|..-++.+.+ .|.+++ ++++.. ...+.++..   ..++.+ 
T Consensus        10 ~~~~~~~~~~~~~~Pifl~L--~gk~VLVVG-gG~va~~ka~~Ll~-~GA~Vt-Vvap~~-~~~l~~l~~---~~~i~~i   80 (223)
T 3dfz_A           10 HHHSSGHIEGRHMYTVMLDL--KGRSVLVVG-GGTIATRRIKGFLQ-EGAAIT-VVAPTV-SAEINEWEA---KGQLRVK   80 (223)
T ss_dssp             ------------CCEEEECC--TTCCEEEEC-CSHHHHHHHHHHGG-GCCCEE-EECSSC-CHHHHHHHH---TTSCEEE
T ss_pred             cccccCcccccCccccEEEc--CCCEEEEEC-CCHHHHHHHHHHHH-CCCEEE-EECCCC-CHHHHHHHH---cCCcEEE
Confidence            45556666666654333332  336899999 59999999999875 467766 455432 122333332   223332 


Q ss_pred             eCCHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCcEE
Q 031216           91 MSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSV  134 (163)
Q Consensus        91 ~~~l~ell~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vV  134 (163)
                      ..++++..-     ..+|.||-.|.-......+....+.|++|-
T Consensus        81 ~~~~~~~dL-----~~adLVIaAT~d~~~N~~I~~~ak~gi~VN  119 (223)
T 3dfz_A           81 RKKVGEEDL-----LNVFFIVVATNDQAVNKFVKQHIKNDQLVN  119 (223)
T ss_dssp             CSCCCGGGS-----SSCSEEEECCCCTHHHHHHHHHSCTTCEEE
T ss_pred             ECCCCHhHh-----CCCCEEEECCCCHHHHHHHHHHHhCCCEEE
Confidence            233332211     489998866644444444433344777654

>4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus}

Probab=95.25  E-value=0.015  Score=50.26  Aligned_cols=35  Identities=14%  Similarity=0.144  Sum_probs=30.2

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~   69 (163)
                      .|++|.|+|++|.+|+.+++.+ ...+.++.++..+
T Consensus       149 ~~~~VLVTGatG~iG~~l~~~L-~~~g~~V~~l~R~  183 (508)
T 4f6l_B          149 PLGNTLLTGATGFLGAYLIEAL-QGYSHRIYCFIRA  183 (508)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHT-BTTEEEEEEEEES
T ss_pred             CCCeEEEECCccchHHHHHHHH-HhcCCEEEEEECC
Confidence            4689999999999999999998 4678899887654

>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A*

Probab=95.24  E-value=0.085  Score=46.87  Aligned_cols=99  Identities=10%  Similarity=0.076  Sum_probs=59.4

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC----------------CCcc-h---h-hhccCCCCCCccee-CC
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS----------------VGED-I---G-MVCDMEQPLEIPVM-SD   93 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~----------------~g~~-~---~-~l~g~~~~~gi~v~-~~   93 (163)
                      .||.|+| .|..|..+++.+. ..|+.=..++|.+.                .|+. +   . .+..+.....+..+ .+
T Consensus        33 ~~VlvvG-~GGlGseiak~La-~aGVg~itlvD~D~Ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~lNp~v~v~~~~~~  110 (531)
T 1tt5_A           33 AHVCLIN-ATATGTEILKNLV-LPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFLQELNSDVSGSFVEES  110 (531)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHH-TTTCSEEEEECCCBBCHHHHHHCTTCCGGGBTSBHHHHHHHHHHTTCTTSBCCEESSC
T ss_pred             CeEEEEC-cCHHHHHHHHHHH-HcCCCeEEEEeCCEechhhcccCccCChhhcCcHHHHHHHHHHHHhCCCCeEEEeCCC
Confidence            6899999 5999999999997 67887777889431                1211 0   0 01111001112222 34


Q ss_pred             HHHHHhcc-cccCCccEEEEccCchhH-HHHHHHHHHcCCcEEEe
Q 031216           94 LTMVLGSI-SQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVY  136 (163)
Q Consensus        94 l~ell~~~-~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVig  136 (163)
                      ++++++.. .--..+|+|||++.+... ......|.+.++|+|.+
T Consensus       111 ~~~~~~~~~~~~~~~DvVi~~~d~~~~r~~ln~~c~~~~iplI~~  155 (531)
T 1tt5_A          111 PENLLDNDPSFFCRFTVVVATQLPESTSLRLADVLWNSQIPLLIC  155 (531)
T ss_dssp             HHHHHHSCGGGGGGCSEEEEESCCHHHHHHHHHHHHHTTCCEEEE
T ss_pred             cchhhhhhHHHhcCCCEEEEeCCCHHHHHHHHHHHHHcCCCEEEE
Confidence            54321100 000378999999855444 55667899999999976

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=95.21  E-value=0.027  Score=51.68  Aligned_cols=37  Identities=11%  Similarity=0.158  Sum_probs=29.1

Q ss_pred             CCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 031216           31 PPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (163)
Q Consensus        31 ~~~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~   70 (163)
                      ++..+.||+|+| .|.||..++..+.+ .+++++ ++|++
T Consensus       310 ~~~~i~kV~VIG-aG~MG~~iA~~la~-aG~~V~-l~D~~  346 (715)
T 1wdk_A          310 IAKDVKQAAVLG-AGIMGGGIAYQSAS-KGTPIL-MKDIN  346 (715)
T ss_dssp             TCCCCSSEEEEC-CHHHHHHHHHHHHH-TTCCEE-EECSS
T ss_pred             ccccCCEEEEEC-CChhhHHHHHHHHh-CCCEEE-EEECC
Confidence            455567899999 59999999998874 588876 56753

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=95.19  E-value=0.11  Score=41.33  Aligned_cols=32  Identities=16%  Similarity=0.228  Sum_probs=26.6

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~   69 (163)
                      .++.|+|++|.+|+.+++.+.+ .+.+++. +++
T Consensus        30 k~vlVTGas~gIG~aia~~L~~-~G~~V~~-~~r   61 (276)
T 2b4q_A           30 RIALVTGGSRGIGQMIAQGLLE-AGARVFI-CAR   61 (276)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEE-ECS
T ss_pred             CEEEEeCCCChHHHHHHHHHHH-CCCEEEE-EeC
Confidence            5799999999999999999985 5788764 454

>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2

Probab=95.18  E-value=0.093  Score=47.06  Aligned_cols=33  Identities=21%  Similarity=0.365  Sum_probs=28.0

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid   68 (163)
                      +++|.|+|++|.+|+.+++.+.+ .+.+++++..
T Consensus        11 ~~~ilVTGatG~IG~~l~~~L~~-~G~~V~~~~r   43 (699)
T 1z45_A           11 SKIVLVTGGAGYIGSHTVVELIE-NGYDCVVADN   43 (699)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEEC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHH-CcCEEEEEEC
Confidence            46899999999999999999985 5788887544

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=95.18  E-value=0.056  Score=44.93  Aligned_cols=96  Identities=13%  Similarity=0.091  Sum_probs=54.0

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCccee-CCHHHHHhcccccCCccEEEEcc
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM-SDLTMVLGSISQSKARAVVIDFT  114 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~-~~l~ell~~~~~~~~~DVVIDfT  114 (163)
                      -+|.|+|++|.+|...++.+....+.+++++..+.. -.+...-+|..   .+.-+ +++.+.+.+. ....+|+|+|++
T Consensus       173 ~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~-~~~~~~~lGad---~vi~~~~~~~~~v~~~-~~~g~Dvvid~~  247 (363)
T 4dvj_A          173 PAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPE-TQEWVKSLGAH---HVIDHSKPLAAEVAAL-GLGAPAFVFSTT  247 (363)
T ss_dssp             EEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHH-HHHHHHHTTCS---EEECTTSCHHHHHHTT-CSCCEEEEEECS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHHHHcCCC---EEEeCCCCHHHHHHHh-cCCCceEEEECC
Confidence            579999988999999988877557888886544221 01111112210   11111 2444444321 124799999988


Q ss_pred             CchhHHHHHHHHHHcC-CcEEEe
Q 031216          115 DASTVYDNVKQATAFG-MRSVVY  136 (163)
Q Consensus       115 ~p~~~~~~~~~al~~G-~~vVig  136 (163)
                      -.....+.+..+++.+ .-+++|
T Consensus       248 g~~~~~~~~~~~l~~~G~iv~~g  270 (363)
T 4dvj_A          248 HTDKHAAEIADLIAPQGRFCLID  270 (363)
T ss_dssp             CHHHHHHHHHHHSCTTCEEEECS
T ss_pred             CchhhHHHHHHHhcCCCEEEEEC
Confidence            6555555555555554 433444

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=95.14  E-value=0.076  Score=42.21  Aligned_cols=30  Identities=37%  Similarity=0.637  Sum_probs=25.4

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEE
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgv   66 (163)
                      ..+.|+|++|.+|+.+++.+.+ .|.+++..
T Consensus        29 k~~lVTGas~GIG~aia~~la~-~G~~V~~~   58 (270)
T 3ftp_A           29 QVAIVTGASRGIGRAIALELAR-RGAMVIGT   58 (270)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHH-TTCEEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHH-CCCEEEEE
Confidence            5689999999999999999884 58887754

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=95.12  E-value=0.14  Score=39.97  Aligned_cols=33  Identities=9%  Similarity=0.158  Sum_probs=26.7

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvi   67 (163)
                      +..+|.|+|++|.+|+.+++.+.+ .|.+++.+.
T Consensus        21 m~k~vlITGas~gIG~~la~~l~~-~G~~V~~~~   53 (251)
T 3orf_A           21 MSKNILVLGGSGALGAEVVKFFKS-KSWNTISID   53 (251)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEE
T ss_pred             cCCEEEEECCCCHHHHHHHHHHHH-CCCEEEEEe
Confidence            346799999999999999999884 688876543

>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8}

Probab=95.11  E-value=0.2  Score=38.15  Aligned_cols=33  Identities=30%  Similarity=0.479  Sum_probs=28.1

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~   69 (163)
                      .+|.|+|++|.+|+.+++.+.+ .+.+++.+.++
T Consensus         2 k~vlITGasggiG~~~a~~l~~-~G~~v~~~~~r   34 (245)
T 2ph3_A            2 RKALITGASRGIGRAIALRLAE-DGFALAIHYGQ   34 (245)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHT-TTCEEEEEESS
T ss_pred             CEEEEeCCCchHHHHHHHHHHH-CCCEEEEEcCC
Confidence            4799999999999999999985 68888876554

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=95.03  E-value=0.3  Score=38.35  Aligned_cols=34  Identities=26%  Similarity=0.353  Sum_probs=28.0

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid   68 (163)
                      +..+|.|+|++|.+|+.+++.+. ..+.+++.+..
T Consensus        28 ~~k~vlITGas~gIG~~la~~l~-~~G~~V~~~~r   61 (271)
T 4iin_A           28 TGKNVLITGASKGIGAEIAKTLA-SMGLKVWINYR   61 (271)
T ss_dssp             SCCEEEETTCSSHHHHHHHHHHH-HTTCEEEEEES
T ss_pred             CCCEEEEECCCcHHHHHHHHHHH-HCCCEEEEEeC
Confidence            34679999999999999999998 46888876544

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=95.00  E-value=0.032  Score=45.51  Aligned_cols=99  Identities=10%  Similarity=0.085  Sum_probs=53.9

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeC---------CH-HHHHhccccc
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS---------DL-TMVLGSISQS  104 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~---------~l-~ell~~~~~~  104 (163)
                      ++||+|+| .|.||..++..+.  .+.++.. +++..  .....+.    ..|+.+..         +. ++..      
T Consensus         2 ~mkI~IiG-aGa~G~~~a~~L~--~g~~V~~-~~r~~--~~~~~l~----~~G~~~~~~~~~~~~~~~~~~~~~------   65 (307)
T 3ego_A            2 SLKIGIIG-GGSVGLLCAYYLS--LYHDVTV-VTRRQ--EQAAAIQ----SEGIRLYKGGEEFRADCSADTSIN------   65 (307)
T ss_dssp             CCEEEEEC-CSHHHHHHHHHHH--TTSEEEE-ECSCH--HHHHHHH----HHCEEEEETTEEEEECCEEESSCC------
T ss_pred             CCEEEEEC-CCHHHHHHHHHHh--cCCceEE-EECCH--HHHHHHH----hCCceEecCCCeeccccccccccc------
Confidence            57999999 5999999999887  6778774 44421  1111110    01111110         00 1222      


Q ss_pred             CCccEEEEccCchhHHHHHHHHHHcC-CcEEEeCCCCCHHHHHHHHHH
Q 031216          105 KARAVVIDFTDASTVYDNVKQATAFG-MRSVVYVPHIQLETVSALSAF  151 (163)
Q Consensus       105 ~~~DVVIDfT~p~~~~~~~~~al~~G-~~vVigttg~~~e~~~~L~~~  151 (163)
                      .++|+||-++.|....+.+......+ ..+|+-.-|++.+  +.|.++
T Consensus        66 ~~~D~vilavK~~~~~~~l~~l~~~~~~~ivs~~nGi~~~--e~l~~~  111 (307)
T 3ego_A           66 SDFDLLVVTVKQHQLQSVFSSLERIGKTNILFLQNGMGHI--HDLKDW  111 (307)
T ss_dssp             SCCSEEEECCCGGGHHHHHHHTTSSCCCEEEECCSSSHHH--HHHHTC
T ss_pred             CCCCEEEEEeCHHHHHHHHHHhhcCCCCeEEEecCCccHH--HHHHHh
Confidence            48999996666666555554432222 2266655588643  345444

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}

Probab=95.00  E-value=0.018  Score=49.28  Aligned_cols=60  Identities=17%  Similarity=0.126  Sum_probs=42.4

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT  114 (163)
                      ..+|||+| .|+||+.+++.+. .-|+++.+ +|+...  .  .  +    .+. .+.++++++.      ..|+|+..+
T Consensus       116 g~tvGIIG-lG~IG~~vA~~l~-~~G~~V~~-~d~~~~--~--~--~----~g~-~~~~l~ell~------~aDvV~l~~  175 (380)
T 2o4c_A          116 ERTYGVVG-AGQVGGRLVEVLR-GLGWKVLV-CDPPRQ--A--R--E----PDG-EFVSLERLLA------EADVISLHT  175 (380)
T ss_dssp             GCEEEEEC-CSHHHHHHHHHHH-HTTCEEEE-ECHHHH--H--H--S----TTS-CCCCHHHHHH------HCSEEEECC
T ss_pred             CCEEEEEe-CCHHHHHHHHHHH-HCCCEEEE-EcCChh--h--h--c----cCc-ccCCHHHHHH------hCCEEEEec
Confidence            46899999 7999999999987 46899874 664210  0  0  0    111 2468999885      799988654

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=94.97  E-value=0.021  Score=46.66  Aligned_cols=33  Identities=9%  Similarity=0.096  Sum_probs=25.2

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCc-EEEEEEecC
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSH   70 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~-eLvgvid~~   70 (163)
                      ..|+.|+| +|.||+.++..+.+ .+. ++. +++++
T Consensus       117 ~k~vlvlG-aGg~g~aia~~L~~-~G~~~v~-v~~R~  150 (277)
T 3don_A          117 DAYILILG-AGGASKGIANELYK-IVRPTLT-VANRT  150 (277)
T ss_dssp             GCCEEEEC-CSHHHHHHHHHHHT-TCCSCCE-EECSC
T ss_pred             CCEEEEEC-CcHHHHHHHHHHHH-CCCCEEE-EEeCC
Confidence            46899999 59999999999874 566 444 56654

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=94.96  E-value=0.11  Score=42.31  Aligned_cols=71  Identities=18%  Similarity=0.140  Sum_probs=41.0

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCC-cEEEEEEecCCC---C--cchhhhccCCCCCCcce-eCCHHHHHhcccccCCc
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARG-MEVAGAIDSHSV---G--EDIGMVCDMEQPLEIPV-MSDLTMVLGSISQSKAR  107 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~-~eLvgvid~~~~---g--~~~~~l~g~~~~~gi~v-~~~l~ell~~~~~~~~~  107 (163)
                      |+||+|+| .|.||..++..+....- .+++ ++|+...   +  .+........ ...+.+ .+++ +.+      .++
T Consensus         1 m~kI~VIG-aG~~G~~la~~L~~~g~~~~V~-l~d~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~d~-~~~------~~a   70 (309)
T 1hyh_A            1 ARKIGIIG-LGNVGAAVAHGLIAQGVADDYV-FIDANEAKVKADQIDFQDAMANL-EAHGNIVINDW-AAL------ADA   70 (309)
T ss_dssp             CCEEEEEC-CSHHHHHHHHHHHHHTCCSEEE-EECSSHHHHHHHHHHHHHHGGGS-SSCCEEEESCG-GGG------TTC
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHhCCCCCEEE-EEcCCHHHHHHHHHHHHhhhhhc-CCCeEEEeCCH-HHh------CCC
Confidence            57999999 59999999998875431 3554 6675321   0  0111110000 112344 4677 445      389


Q ss_pred             cEEEEccC
Q 031216          108 AVVIDFTD  115 (163)
Q Consensus       108 DVVIDfT~  115 (163)
                      |+||.++.
T Consensus        71 DvViiav~   78 (309)
T 1hyh_A           71 DVVISTLG   78 (309)
T ss_dssp             SEEEECCS
T ss_pred             CEEEEecC
Confidence            99996654

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=94.90  E-value=0.053  Score=44.67  Aligned_cols=70  Identities=20%  Similarity=0.261  Sum_probs=40.4

Q ss_pred             CCCCeeEEEEcCCCHHHHHHHHHHHhcCCc--EEEEEEecCC--CCcchhhhccCCCCCCcceeCCHHHHHhcccccCCc
Q 031216           32 PQSNIKVIINGAVKEIGRAAVIAVTKARGM--EVAGAIDSHS--VGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKAR  107 (163)
Q Consensus        32 ~~~~irV~VvGa~G~mG~~i~~~i~~~~~~--eLvgvid~~~--~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~  107 (163)
                      +..+.||+|+|+ |.||..++..+.. .++  +|+ ++|...  .|. +.++.... ...+..+.|+ +.+      ..+
T Consensus        11 ~~~~~kV~ViGa-G~vG~~~a~~l~~-~g~~~ev~-L~Di~~~~~g~-a~dl~~~~-~~~i~~t~d~-~~l------~~a   78 (303)
T 2i6t_A           11 NKTVNKITVVGG-GELGIACTLAISA-KGIADRLV-LLDLSEGTKGA-TMDLEIFN-LPNVEISKDL-SAS------AHS   78 (303)
T ss_dssp             ---CCEEEEECC-SHHHHHHHHHHHH-HTCCSEEE-EECCC-----C-HHHHHHHT-CTTEEEESCG-GGG------TTC
T ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHh-cCCCCEEE-EEcCCcchHHH-HHHHhhhc-CCCeEEeCCH-HHH------CCC
Confidence            345689999995 9999998888764 455  555 678532  111 11222111 2255566777 434      378


Q ss_pred             cEEEEc
Q 031216          108 AVVIDF  113 (163)
Q Consensus       108 DVVIDf  113 (163)
                      |+||..
T Consensus        79 D~Vi~a   84 (303)
T 2i6t_A           79 KVVIFT   84 (303)
T ss_dssp             SEEEEC
T ss_pred             CEEEEc
Confidence            888754

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=94.89  E-value=0.079  Score=42.04  Aligned_cols=33  Identities=24%  Similarity=0.330  Sum_probs=27.1

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~   69 (163)
                      ..+.|+|++|.+|+.+++.+.+ .|.+++...++
T Consensus        28 k~~lVTGas~GIG~aia~~la~-~G~~Vv~~~~~   60 (267)
T 3u5t_A           28 KVAIVTGASRGIGAAIAARLAS-DGFTVVINYAG   60 (267)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHH-HTCEEEEEESS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHH-CCCEEEEEcCC
Confidence            4699999999999999999885 58888765443

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=94.89  E-value=0.24  Score=38.27  Aligned_cols=31  Identities=16%  Similarity=0.232  Sum_probs=26.5

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvi   67 (163)
                      .++.|+|++|.+|+.+++.+.+ .+.+++.+.
T Consensus        13 k~vlVTGasggiG~~~a~~l~~-~G~~V~~~~   43 (265)
T 2o23_A           13 LVAVITGGASGLGLATAERLVG-QGASAVLLD   43 (265)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEEEE
T ss_pred             CEEEEECCCChHHHHHHHHHHH-CCCEEEEEe
Confidence            5799999999999999999985 588887643

>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}

Probab=94.89  E-value=0.18  Score=38.44  Aligned_cols=31  Identities=29%  Similarity=0.375  Sum_probs=26.1

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvi   67 (163)
                      .+|.|+|++|.+|+.+++.+.+ .+.+++.+.
T Consensus         6 k~vlVtGasggiG~~~a~~l~~-~G~~V~~~~   36 (234)
T 2ehd_A            6 GAVLITGASRGIGEATARLLHA-KGYRVGLMA   36 (234)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHH-TTCEEEEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHH-CCCEEEEEE
Confidence            4699999999999999999985 688877543

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=94.85  E-value=0.08  Score=42.32  Aligned_cols=32  Identities=28%  Similarity=0.294  Sum_probs=26.4

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~   69 (163)
                      .++.|+|++|.+|+.+++.+.+ .|.+++. +++
T Consensus        30 k~vlVTGas~gIG~aia~~la~-~G~~V~~-~~r   61 (277)
T 3gvc_A           30 KVAIVTGAGAGIGLAVARRLAD-EGCHVLC-ADI   61 (277)
T ss_dssp             CEEEETTTTSTHHHHHHHHHHH-TTCEEEE-EES
T ss_pred             CEEEEECCCcHHHHHHHHHHHH-CCCEEEE-EeC
Confidence            5699999999999999999874 5888775 444

>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*

Probab=94.84  E-value=0.038  Score=42.85  Aligned_cols=32  Identities=25%  Similarity=0.271  Sum_probs=26.8

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvi   67 (163)
                      ..++.|+|++|.+|+.+++.+.+ .+.+++.+.
T Consensus         7 ~k~vlVTGas~gIG~~ia~~l~~-~G~~V~~~~   38 (241)
T 1dhr_A            7 ARRVLVYGGRGALGSRCVQAFRA-RNWWVASID   38 (241)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHT-TTCEEEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHh-CCCEEEEEe
Confidence            35799999999999999999984 588877543

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=94.80  E-value=0.32  Score=40.33  Aligned_cols=96  Identities=10%  Similarity=0.064  Sum_probs=54.8

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCccee--CCHHHHHhcccccCCccEEEE
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAVVID  112 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~--~~l~ell~~~~~~~~~DVVID  112 (163)
                      .-+|.|+|++|.+|...++.+. ..+.++++..+..  -.+...-+|.   ..+.-+  .++.+.+.++.. ..+|+++|
T Consensus       165 g~~VlV~Ga~G~vG~~a~qla~-~~Ga~Vi~~~~~~--~~~~~~~lGa---~~vi~~~~~~~~~~v~~~t~-g~~d~v~d  237 (371)
T 3gqv_A          165 PVYVLVYGGSTATATVTMQMLR-LSGYIPIATCSPH--NFDLAKSRGA---EEVFDYRAPNLAQTIRTYTK-NNLRYALD  237 (371)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHH-HTTCEEEEEECGG--GHHHHHHTTC---SEEEETTSTTHHHHHHHHTT-TCCCEEEE
T ss_pred             CcEEEEECCCcHHHHHHHHHHH-HCCCEEEEEeCHH--HHHHHHHcCC---cEEEECCCchHHHHHHHHcc-CCccEEEE
Confidence            3579999988999999888776 6788998876321  1122221221   111112  233333322111 25999999


Q ss_pred             ccCchhHHHHHHHHH-H-cCCcEEEeC
Q 031216          113 FTDASTVYDNVKQAT-A-FGMRSVVYV  137 (163)
Q Consensus       113 fT~p~~~~~~~~~al-~-~G~~vVigt  137 (163)
                      ++-.....+.+..++ + .|.-+.+|.
T Consensus       238 ~~g~~~~~~~~~~~l~~~~G~iv~~g~  264 (371)
T 3gqv_A          238 CITNVESTTFCFAAIGRAGGHYVSLNP  264 (371)
T ss_dssp             SSCSHHHHHHHHHHSCTTCEEEEESSC
T ss_pred             CCCchHHHHHHHHHhhcCCCEEEEEec
Confidence            986655555565565 3 455555553

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=94.78  E-value=0.077  Score=39.71  Aligned_cols=31  Identities=26%  Similarity=0.305  Sum_probs=25.2

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvi   67 (163)
                      -+|.|+|++|.+|+.+++.+.. .+.+++++.
T Consensus        40 ~~vlV~Ga~ggiG~~~~~~~~~-~G~~V~~~~   70 (198)
T 1pqw_A           40 ERVLIHSATGGVGMAAVSIAKM-IGARIYTTA   70 (198)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHH-HTCEEEEEE
T ss_pred             CEEEEeeCCChHHHHHHHHHHH-cCCEEEEEe
Confidence            5799999899999999988774 578877543

>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}

Probab=94.76  E-value=0.33  Score=38.06  Aligned_cols=33  Identities=21%  Similarity=0.309  Sum_probs=27.3

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~   69 (163)
                      .+|.|+|++|.+|+.+++.+. ..+.+++...++
T Consensus        27 k~vlITGas~gIG~a~a~~l~-~~G~~V~~~~~~   59 (272)
T 4e3z_A           27 PVVLVTGGSRGIGAAVCRLAA-RQGWRVGVNYAA   59 (272)
T ss_dssp             CEEEETTTTSHHHHHHHHHHH-HTTCEEEEEESS
T ss_pred             CEEEEECCCchHHHHHHHHHH-HCCCEEEEEcCC
Confidence            469999999999999999987 468888765554

>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=94.73  E-value=0.033  Score=42.57  Aligned_cols=32  Identities=28%  Similarity=0.409  Sum_probs=26.7

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid   68 (163)
                      .++.|+|++|.+|+.+++.+.+ .+.+++.+..
T Consensus         3 k~vlVtGasggiG~~la~~l~~-~G~~V~~~~r   34 (242)
T 1uay_A            3 RSALVTGGASGLGRAAALALKA-RGYRVVVLDL   34 (242)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-HTCEEEEEES
T ss_pred             CEEEEeCCCChHHHHHHHHHHH-CCCEEEEEcc
Confidence            5799999999999999999985 4788876543

>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0

Probab=94.71  E-value=0.23  Score=38.57  Aligned_cols=35  Identities=17%  Similarity=0.245  Sum_probs=28.6

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~   69 (163)
                      ++.++.|+|++|.+|+.+++.+.+ .+.+++.+.++
T Consensus         6 ~~k~vlVTGas~gIG~~~a~~l~~-~G~~v~~~~~~   40 (264)
T 3i4f_A            6 FVRHALITAGTKGLGKQVTEKLLA-KGYSVTVTYHS   40 (264)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHH-TTCEEEEEESS
T ss_pred             ccCEEEEeCCCchhHHHHHHHHHH-CCCEEEEEcCC
Confidence            346799999999999999999984 58888865544

>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=94.70  E-value=0.066  Score=41.22  Aligned_cols=32  Identities=28%  Similarity=0.249  Sum_probs=26.9

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid   68 (163)
                      .++.|+|++|.+|+.+++.+.+ .+.+++.+..
T Consensus         4 k~vlITGas~gIG~~~a~~l~~-~G~~V~~~~r   35 (236)
T 1ooe_A            4 GKVIVYGGKGALGSAILEFFKK-NGYTVLNIDL   35 (236)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHH-TTEEEEEEES
T ss_pred             CEEEEECCCcHHHHHHHHHHHH-CCCEEEEEec
Confidence            5799999999999999999985 5888876543

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=94.69  E-value=0.24  Score=39.34  Aligned_cols=30  Identities=30%  Similarity=0.377  Sum_probs=25.9

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEE
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgv   66 (163)
                      .+|.|+|++|.+|+.+++.+.+ .+.+++.+
T Consensus        19 k~vlVTGasggIG~~la~~l~~-~G~~V~~~   48 (303)
T 1yxm_A           19 QVAIVTGGATGIGKAIVKELLE-LGSNVVIA   48 (303)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHH-CCCEEEEE
Confidence            5799999999999999999985 67887754

>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*

Probab=94.67  E-value=0.056  Score=41.89  Aligned_cols=70  Identities=17%  Similarity=0.162  Sum_probs=42.1

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT  114 (163)
                      |.++.|+|++|.+|+.+++.+.+ .+.+++.+ +++....+. .   .  ..++.-.++++++++..  ..++|+||...
T Consensus         1 mk~vlVTGas~gIG~~~a~~l~~-~G~~V~~~-~r~~~~~~~-~---~--~~Dl~~~~~v~~~~~~~--~~~id~lv~~A   70 (257)
T 1fjh_A            1 MSIIVISGCATGIGAATRKVLEA-AGHQIVGI-DIRDAEVIA-D---L--STAEGRKQAIADVLAKC--SKGMDGLVLCA   70 (257)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHH-TTCEEEEE-ESSSSSEEC-C---T--TSHHHHHHHHHHHHTTC--TTCCSEEEECC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHH-CCCEEEEE-eCCchhhcc-c---c--ccCCCCHHHHHHHHHHh--CCCCCEEEECC
Confidence            45799999999999999999985 68887764 433211100 0   0  11222223455555421  03679999865

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=94.67  E-value=0.2  Score=40.45  Aligned_cols=36  Identities=25%  Similarity=0.399  Sum_probs=26.1

Q ss_pred             CCCCeeEEEEcCCCHHHHHHHHHHHhcCCc--EEEEEEecC
Q 031216           32 PQSNIKVIINGAVKEIGRAAVIAVTKARGM--EVAGAIDSH   70 (163)
Q Consensus        32 ~~~~irV~VvGa~G~mG~~i~~~i~~~~~~--eLvgvid~~   70 (163)
                      +..++||+|+|+ |.||..++..+.. .+.  +++ ++|+.
T Consensus         4 ~~~~mkI~IiGa-G~vG~~~a~~l~~-~g~~~~V~-l~d~~   41 (319)
T 1lld_A            4 TVKPTKLAVIGA-GAVGSTLAFAAAQ-RGIAREIV-LEDIA   41 (319)
T ss_dssp             ---CCEEEEECC-SHHHHHHHHHHHH-TTCCSEEE-EECSS
T ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHh-CCCCCEEE-EEeCC
Confidence            345689999995 9999999988874 455  765 66753

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=94.67  E-value=0.061  Score=44.17  Aligned_cols=70  Identities=11%  Similarity=0.042  Sum_probs=42.8

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC---CcchhhhccC----CCCCCcceeCCHHHHHhcccccCCc
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV---GEDIGMVCDM----EQPLEIPVMSDLTMVLGSISQSKAR  107 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~---g~~~~~l~g~----~~~~gi~v~~~l~ell~~~~~~~~~  107 (163)
                      ++||+|+|+ |.||..++..+....-++ +.++|....   |. +.++...    .....+..++|+ +.+      .++
T Consensus         2 ~~kI~VIGa-G~vG~~~a~~la~~g~~~-v~L~Di~~~~~~g~-~~dl~~~~~~~~~~~~i~~t~d~-~a~------~~a   71 (309)
T 1ur5_A            2 RKKISIIGA-GFVGSTTAHWLAAKELGD-IVLLDIVEGVPQGK-ALDLYEASPIEGFDVRVTGTNNY-ADT------ANS   71 (309)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCSE-EEEECSSSSHHHHH-HHHHHTTHHHHTCCCCEEEESCG-GGG------TTC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCCCe-EEEEeCCccHHHHH-HHhHHHhHhhcCCCeEEEECCCH-HHH------CCC
Confidence            469999996 999999999887554348 778885421   11 1111110    002234445787 455      389


Q ss_pred             cEEEEcc
Q 031216          108 AVVIDFT  114 (163)
Q Consensus       108 DVVIDfT  114 (163)
                      |+||...
T Consensus        72 D~Vi~a~   78 (309)
T 1ur5_A           72 DVIVVTS   78 (309)
T ss_dssp             SEEEECC
T ss_pred             CEEEEcC
Confidence            9999653

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=94.64  E-value=0.02  Score=47.17  Aligned_cols=96  Identities=17%  Similarity=0.200  Sum_probs=49.8

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCccee-CCHHHHHhcccccCCccEEEEcc
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM-SDLTMVLGSISQSKARAVVIDFT  114 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~-~~l~ell~~~~~~~~~DVVIDfT  114 (163)
                      -+|.|+|++|.+|...++.+. ..+.+++++..+.. ..+...-+|..   .+.-+ .++.+.+.+...+..+|++||++
T Consensus       161 ~~VlV~Gasg~iG~~~~~~a~-~~Ga~Vi~~~~~~~-~~~~~~~~ga~---~v~~~~~~~~~~v~~~~~~~g~Dvvid~~  235 (342)
T 4eye_A          161 ETVLVLGAAGGIGTAAIQIAK-GMGAKVIAVVNRTA-ATEFVKSVGAD---IVLPLEEGWAKAVREATGGAGVDMVVDPI  235 (342)
T ss_dssp             CEEEESSTTSHHHHHHHHHHH-HTTCEEEEEESSGG-GHHHHHHHTCS---EEEESSTTHHHHHHHHTTTSCEEEEEESC
T ss_pred             CEEEEECCCCHHHHHHHHHHH-HcCCEEEEEeCCHH-HHHHHHhcCCc---EEecCchhHHHHHHHHhCCCCceEEEECC
Confidence            479999988999999988876 56888886654321 11111112211   11111 34433332221224799999987


Q ss_pred             CchhHHHHHHHHHHcCCcEEEe
Q 031216          115 DASTVYDNVKQATAFGMRSVVY  136 (163)
Q Consensus       115 ~p~~~~~~~~~al~~G~~vVig  136 (163)
                      -.+.....+......|.-+++|
T Consensus       236 g~~~~~~~~~~l~~~G~iv~~G  257 (342)
T 4eye_A          236 GGPAFDDAVRTLASEGRLLVVG  257 (342)
T ss_dssp             C--CHHHHHHTEEEEEEEEEC-
T ss_pred             chhHHHHHHHhhcCCCEEEEEE
Confidence            5443333333223334444444

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=94.64  E-value=0.1  Score=40.49  Aligned_cols=32  Identities=31%  Similarity=0.518  Sum_probs=26.6

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~   69 (163)
                      .++.|+|++|.+|+.+++.+.+ .|.+++. +++
T Consensus         4 k~vlVTGas~GIG~a~a~~l~~-~G~~V~~-~~r   35 (235)
T 3l6e_A            4 GHIIVTGAGSGLGRALTIGLVE-RGHQVSM-MGR   35 (235)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHH-TTCEEEE-EES
T ss_pred             CEEEEECCCCHHHHHHHHHHHH-CCCEEEE-EEC
Confidence            5799999999999999999984 6888775 444

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}

Probab=94.62  E-value=0.39  Score=37.87  Aligned_cols=89  Identities=18%  Similarity=0.228  Sum_probs=51.1

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhccc-ccCCcc-EEEEc
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSIS-QSKARA-VVIDF  113 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~-~~~~~D-VVIDf  113 (163)
                      .++.|+|++|.+|+.+++.+.+ .+.+++.+ +++...  ..++           ...+++....+. ...++. +..|.
T Consensus         7 k~~lVTGas~GIG~aia~~la~-~G~~V~~~-~r~~~~--~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~Dv   71 (274)
T 3e03_A            7 KTLFITGASRGIGLAIALRAAR-DGANVAIA-AKSAVA--NPKL-----------PGTIHSAAAAVNAAGGQGLALKCDI   71 (274)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEEE-ESCCSC--CTTS-----------CCCHHHHHHHHHHHTSEEEEEECCT
T ss_pred             cEEEEECCCChHHHHHHHHHHH-CCCEEEEE-eccchh--hhhh-----------HHHHHHHHHHHHhcCCeEEEEeCCC
Confidence            5799999999999999999985 57887754 433210  0010           012222111000 001111 34577


Q ss_pred             cCchhHHHHHHHHHHc--CCcEEEeCCC
Q 031216          114 TDASTVYDNVKQATAF--GMRSVVYVPH  139 (163)
Q Consensus       114 T~p~~~~~~~~~al~~--G~~vVigttg  139 (163)
                      +.++...+.+....+.  ++.+++-..|
T Consensus        72 ~~~~~v~~~~~~~~~~~g~iD~lvnnAG   99 (274)
T 3e03_A           72 REEDQVRAAVAATVDTFGGIDILVNNAS   99 (274)
T ss_dssp             TCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             CCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            7787777766666554  6888876654

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=94.61  E-value=0.16  Score=40.43  Aligned_cols=32  Identities=31%  Similarity=0.331  Sum_probs=26.5

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~   69 (163)
                      .++.|+|++|.+|+.+++.+.+ .+.+++. +++
T Consensus        28 k~vlVTGas~GIG~aia~~l~~-~G~~V~~-~~r   59 (277)
T 4dqx_A           28 RVCIVTGGGSGIGRATAELFAK-NGAYVVV-ADV   59 (277)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEE-EES
T ss_pred             CEEEEECCCcHHHHHHHHHHHH-CCCEEEE-EeC
Confidence            5799999999999999999984 6888774 444

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=94.54  E-value=0.096  Score=37.82  Aligned_cols=31  Identities=19%  Similarity=0.348  Sum_probs=25.1

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~   69 (163)
                      .+|.|+| .|++|+.+++.+.+ .+.+++. +|+
T Consensus         4 ~~vlI~G-~G~vG~~la~~L~~-~g~~V~v-id~   34 (153)
T 1id1_A            4 DHFIVCG-HSILAINTILQLNQ-RGQNVTV-ISN   34 (153)
T ss_dssp             SCEEEEC-CSHHHHHHHHHHHH-TTCCEEE-EEC
T ss_pred             CcEEEEC-CCHHHHHHHHHHHH-CCCCEEE-EEC
Confidence            4799999 59999999999875 5788875 454

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=94.54  E-value=0.33  Score=38.60  Aligned_cols=32  Identities=19%  Similarity=0.236  Sum_probs=26.3

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~   69 (163)
                      .++.|+|++|.+|+.+++.+. ..|.+++. +++
T Consensus        26 k~~lVTGas~GIG~~ia~~la-~~G~~V~~-~~r   57 (281)
T 3v2h_A           26 KTAVITGSTSGIGLAIARTLA-KAGANIVL-NGF   57 (281)
T ss_dssp             CEEEEETCSSHHHHHHHHHHH-HTTCEEEE-ECC
T ss_pred             CEEEEeCCCcHHHHHHHHHHH-HCCCEEEE-EeC
Confidence            579999999999999999998 46788774 443

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=94.51  E-value=0.032  Score=49.08  Aligned_cols=91  Identities=9%  Similarity=0.062  Sum_probs=54.1

Q ss_pred             ccCCCCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCC
Q 031216           27 CSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKA  106 (163)
Q Consensus        27 ~~~~~~~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~  106 (163)
                      ++++..-.-.+|+|+| .|++|+.+++.+. .-|+++. ++|++..  ...+..    ..++. +.++++++.      .
T Consensus       239 Ratg~~L~GKTVgVIG-~G~IGr~vA~~lr-afGa~Vi-v~d~dp~--~a~~A~----~~G~~-vv~LeElL~------~  302 (464)
T 3n58_A          239 RGTDVMMAGKVAVVCG-YGDVGKGSAQSLA-GAGARVK-VTEVDPI--CALQAA----MDGFE-VVTLDDAAS------T  302 (464)
T ss_dssp             HHHCCCCTTCEEEEEC-CSHHHHHHHHHHH-HTTCEEE-EECSSHH--HHHHHH----HTTCE-ECCHHHHGG------G
T ss_pred             HhcCCcccCCEEEEEC-cCHHHHHHHHHHH-HCCCEEE-EEeCCcc--hhhHHH----hcCce-eccHHHHHh------h
Confidence            4455555557899999 7999999999987 4578876 4554221  111100    12333 347999885      8


Q ss_pred             ccEEEEccC-chhHHHHHHHHHHcCCcE
Q 031216          107 RAVVIDFTD-ASTVYDNVKQATAFGMRS  133 (163)
Q Consensus       107 ~DVVIDfT~-p~~~~~~~~~al~~G~~v  133 (163)
                      .|+|+..+- +..........++.|.-+
T Consensus       303 ADIVv~atgt~~lI~~e~l~~MK~GAIL  330 (464)
T 3n58_A          303 ADIVVTTTGNKDVITIDHMRKMKDMCIV  330 (464)
T ss_dssp             CSEEEECCSSSSSBCHHHHHHSCTTEEE
T ss_pred             CCEEEECCCCccccCHHHHhcCCCCeEE
Confidence            999997652 222223333344445433

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=94.50  E-value=0.028  Score=45.03  Aligned_cols=108  Identities=11%  Similarity=0.044  Sum_probs=60.1

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCcc-EEEEc
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDF  113 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~D-VVIDf  113 (163)
                      ++||+|+| .|.||..+++.+.+ .+.++++. ++...-.+.. ++..+       .+.+.+++..+...-+++ +|+|+
T Consensus         6 ~mkI~IIG-~G~~G~sLA~~L~~-~G~~V~~~-~~~~~~~~aD-ilavP-------~~ai~~vl~~l~~~l~~g~ivvd~   74 (232)
T 3dfu_A            6 RLRVGIFD-DGSSTVNMAEKLDS-VGHYVTVL-HAPEDIRDFE-LVVID-------AHGVEGYVEKLSAFARRGQMFLHT   74 (232)
T ss_dssp             CCEEEEEC-CSCCCSCHHHHHHH-TTCEEEEC-SSGGGGGGCS-EEEEC-------SSCHHHHHHHHHTTCCTTCEEEEC
T ss_pred             CcEEEEEe-eCHHHHHHHHHHHH-CCCEEEEe-cCHHHhccCC-EEEEc-------HHHHHHHHHHHHHhcCCCCEEEEE
Confidence            47999999 69999999999875 58888754 4321101111 22211       123444443322112344 77886


Q ss_pred             c--CchhHHHHHHHHHHcCCcEEEeCC---------CCCHHHHHHHHHHhhhcC
Q 031216          114 T--DASTVYDNVKQATAFGMRSVVYVP---------HIQLETVSALSAFCDKAS  156 (163)
Q Consensus       114 T--~p~~~~~~~~~al~~G~~vVigtt---------g~~~e~~~~L~~~A~~~~  156 (163)
                      +  .+....+   .+.+.|..+|-+-|         +.+++..+.++++.+..|
T Consensus        75 sgs~~~~vl~---~~~~~g~~fvg~HPm~g~~~~i~a~d~~a~~~l~~L~~~lG  125 (232)
T 3dfu_A           75 SLTHGITVMD---PLETSGGIVMSAHPIGQDRWVASALDELGETIVGLLVGELG  125 (232)
T ss_dssp             CSSCCGGGGH---HHHHTTCEEEEEEEEETTEEEEEESSHHHHHHHHHHHHHTT
T ss_pred             CCcCHHHHHH---HHHhCCCcEEEeeeCCCCceeeeCCCHHHHHHHHHHHHHhC
Confidence            5  3433333   33466775442222         235666788888888765

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=94.45  E-value=0.029  Score=46.22  Aligned_cols=95  Identities=17%  Similarity=0.080  Sum_probs=52.3

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEccC
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT~  115 (163)
                      -+|.|+|++|.+|...++.+. ..+.+++++ .+... .+...-+|..  . +.-..++.+.+.+......+|+++|++-
T Consensus       152 ~~VlV~Ga~g~iG~~~~q~a~-~~Ga~Vi~~-~~~~~-~~~~~~lGa~--~-i~~~~~~~~~~~~~~~~~g~D~vid~~g  225 (343)
T 3gaz_A          152 QTVLIQGGGGGVGHVAIQIAL-ARGARVFAT-ARGSD-LEYVRDLGAT--P-IDASREPEDYAAEHTAGQGFDLVYDTLG  225 (343)
T ss_dssp             CEEEEETTTSHHHHHHHHHHH-HTTCEEEEE-ECHHH-HHHHHHHTSE--E-EETTSCHHHHHHHHHTTSCEEEEEESSC
T ss_pred             CEEEEecCCCHHHHHHHHHHH-HCCCEEEEE-eCHHH-HHHHHHcCCC--E-eccCCCHHHHHHHHhcCCCceEEEECCC
Confidence            479999988999999988776 678899887 43211 1111112211  1 1111344443322112357999999886


Q ss_pred             chhHHHHHHHHHHc-CCcEEEeC
Q 031216          116 ASTVYDNVKQATAF-GMRSVVYV  137 (163)
Q Consensus       116 p~~~~~~~~~al~~-G~~vVigt  137 (163)
                      .+. .+.+..+++. |.-+++|.
T Consensus       226 ~~~-~~~~~~~l~~~G~iv~~g~  247 (343)
T 3gaz_A          226 GPV-LDASFSAVKRFGHVVSCLG  247 (343)
T ss_dssp             THH-HHHHHHHEEEEEEEEESCC
T ss_pred             cHH-HHHHHHHHhcCCeEEEEcc
Confidence            543 3334444444 44333443

>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A

Probab=94.44  E-value=0.17  Score=44.07  Aligned_cols=88  Identities=10%  Similarity=0.101  Sum_probs=52.1

Q ss_pred             CCCCeeEEEEcCCCHHHHH-HHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHH-HHHhcccccCCccE
Q 031216           32 PQSNIKVIINGAVKEIGRA-AVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLT-MVLGSISQSKARAV  109 (163)
Q Consensus        32 ~~~~irV~VvGa~G~mG~~-i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~-ell~~~~~~~~~DV  109 (163)
                      +.++.||.|+| .|+.|.. +++.+. ..|.++.+ .|.... .....+.    ..|++++...+ +.+      ..+|+
T Consensus        19 ~~~~~~v~viG-iG~sG~s~~A~~l~-~~G~~V~~-~D~~~~-~~~~~l~----~~gi~~~~g~~~~~~------~~~d~   84 (494)
T 4hv4_A           19 MRRVRHIHFVG-IGGAGMGGIAEVLA-NEGYQISG-SDLAPN-SVTQHLT----ALGAQIYFHHRPENV------LDASV   84 (494)
T ss_dssp             ---CCEEEEET-TTSTTHHHHHHHHH-HTTCEEEE-ECSSCC-HHHHHHH----HTTCEEESSCCGGGG------TTCSE
T ss_pred             hccCCEEEEEE-EcHhhHHHHHHHHH-hCCCeEEE-EECCCC-HHHHHHH----HCCCEEECCCCHHHc------CCCCE
Confidence            44567999999 5999985 677665 67999885 674321 1112221    45666653222 223      37898


Q ss_pred             EEEcc--CchhHHHHHHHHHHcCCcEEE
Q 031216          110 VIDFT--DASTVYDNVKQATAFGMRSVV  135 (163)
Q Consensus       110 VIDfT--~p~~~~~~~~~al~~G~~vVi  135 (163)
                      || .|  .|.. .+.+..|.++|++|+.
T Consensus        85 vV-~Spgi~~~-~p~~~~a~~~gi~v~~  110 (494)
T 4hv4_A           85 VV-VSTAISAD-NPEIVAAREARIPVIR  110 (494)
T ss_dssp             EE-ECTTSCTT-CHHHHHHHHTTCCEEE
T ss_pred             EE-ECCCCCCC-CHHHHHHHHCCCCEEc
Confidence            88 44  2333 3456667788888764

>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}

Probab=94.42  E-value=0.058  Score=42.82  Aligned_cols=33  Identities=27%  Similarity=0.384  Sum_probs=27.5

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvi   67 (163)
                      ...+|.|+|++|.+|+.+++.+.+ .|.+++.+.
T Consensus        13 ~~k~vlVTGas~GIG~aia~~l~~-~G~~V~~~~   45 (269)
T 3vtz_A           13 TDKVAIVTGGSSGIGLAVVDALVR-YGAKVVSVS   45 (269)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHH-TTCEEEEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHH-CCCEEEEEe
Confidence            346899999999999999999884 688887543

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}

Probab=94.41  E-value=0.11  Score=41.15  Aligned_cols=32  Identities=19%  Similarity=0.311  Sum_probs=26.2

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~   69 (163)
                      .++.|+|++|.+|+.+++.+.+ .|.+++. +++
T Consensus        28 k~vlVTGas~gIG~aia~~l~~-~G~~V~~-~~r   59 (260)
T 3gem_A           28 APILITGASQRVGLHCALRLLE-HGHRVII-SYR   59 (260)
T ss_dssp             CCEEESSTTSHHHHHHHHHHHH-TTCCEEE-EES
T ss_pred             CEEEEECCCCHHHHHHHHHHHH-CCCEEEE-EeC
Confidence            4689999999999999999885 5788775 444

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=94.40  E-value=0.48  Score=36.77  Aligned_cols=32  Identities=28%  Similarity=0.412  Sum_probs=26.5

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~   69 (163)
                      .++.|+|++|.+|+.+++.+.+ .+.+++.. ++
T Consensus         8 k~~lVTGas~gIG~aia~~l~~-~G~~V~~~-~r   39 (257)
T 3tpc_A            8 RVFIVTGASSGLGAAVTRMLAQ-EGATVLGL-DL   39 (257)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHH-TTCEEEEE-ES
T ss_pred             CEEEEeCCCCHHHHHHHHHHHH-CCCEEEEE-eC
Confidence            4689999999999999999984 68887754 43

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=94.37  E-value=0.058  Score=44.64  Aligned_cols=73  Identities=11%  Similarity=0.124  Sum_probs=45.2

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCc------EEEEEEecC----C---CCcchhhhccC--CCCCCcceeCCHHHHH
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGM------EVAGAIDSH----S---VGEDIGMVCDM--EQPLEIPVMSDLTMVL   98 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~------eLvgvid~~----~---~g~~~~~l~g~--~~~~gi~v~~~l~ell   98 (163)
                      .++||+|+|++|.+|+.++..+....-+      +|+. +|..    .   .| .+.++...  ....++..++++.+++
T Consensus         4 ~~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l-~Di~~~~~~~~~~g-~~~dl~~~~~~~~~~i~~~~~~~~al   81 (329)
T 1b8p_A            4 TPMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQL-LEIPNEKAQKALQG-VMMEIDDCAFPLLAGMTAHADPMTAF   81 (329)
T ss_dssp             CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEE-ECCSCHHHHHHHHH-HHHHHHTTTCTTEEEEEEESSHHHHT
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEE-EcCCCccccccchh-hHHHHhhhcccccCcEEEecCcHHHh
Confidence            4589999998899999999888754322      6664 7754    1   11 01112110  0011344557888888


Q ss_pred             hcccccCCccEEEEcc
Q 031216           99 GSISQSKARAVVIDFT  114 (163)
Q Consensus        99 ~~~~~~~~~DVVIDfT  114 (163)
                      .      .+|+||...
T Consensus        82 ~------~aD~Vi~~a   91 (329)
T 1b8p_A           82 K------DADVALLVG   91 (329)
T ss_dssp             T------TCSEEEECC
T ss_pred             C------CCCEEEEeC
Confidence            4      899988653

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=94.36  E-value=0.17  Score=39.58  Aligned_cols=32  Identities=34%  Similarity=0.433  Sum_probs=26.6

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~   69 (163)
                      .++.|+|++|.+|+.+++.+.+ .+.+++. +++
T Consensus         9 k~vlVTGas~gIG~~ia~~l~~-~G~~V~~-~~r   40 (259)
T 4e6p_A            9 KSALITGSARGIGRAFAEAYVR-EGATVAI-ADI   40 (259)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHH-TTCEEEE-EES
T ss_pred             CEEEEECCCcHHHHHHHHHHHH-CCCEEEE-EeC
Confidence            4799999999999999999984 5888764 454

>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti}

Probab=94.35  E-value=0.36  Score=39.50  Aligned_cols=88  Identities=16%  Similarity=0.195  Sum_probs=52.1

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCcc-EEEEcc
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~D-VVIDfT  114 (163)
                      ..+.|+|++|.+|+.+++.+. ..|.++++...+ ..+.+...+.            .+.+.+..  ...++. +..|.|
T Consensus         6 k~vlVTGas~GIG~aia~~L~-~~G~~V~~~~r~-~~~r~~~~~~------------~l~~~~~~--~~~~~~~~~~Dvt   69 (324)
T 3u9l_A            6 KIILITGASSGFGRLTAEALA-GAGHRVYASMRD-IVGRNASNVE------------AIAGFARD--NDVDLRTLELDVQ   69 (324)
T ss_dssp             CEEEESSCSSHHHHHHHHHHH-HTTCEEEEEESC-TTTTTHHHHH------------HHHHHHHH--HTCCEEEEECCTT
T ss_pred             CEEEEECCCcHHHHHHHHHHH-HCCCEEEEecCc-ccccCHHHHH------------HHHHHHHh--cCCcEEEEEeecC
Confidence            468999999999999999998 468998876542 2222211110            11111110  001222 245777


Q ss_pred             CchhHHHHHHHHHHc--CCcEEEeCCC
Q 031216          115 DASTVYDNVKQATAF--GMRSVVYVPH  139 (163)
Q Consensus       115 ~p~~~~~~~~~al~~--G~~vVigttg  139 (163)
                      .++...+.+....+.  ++.+|+-..|
T Consensus        70 d~~~v~~~~~~~~~~~g~iD~lVnnAG   96 (324)
T 3u9l_A           70 SQVSVDRAIDQIIGEDGRIDVLIHNAG   96 (324)
T ss_dssp             CHHHHHHHHHHHHHHHSCCSEEEECCC
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            777777666655544  6888876655

>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A

Probab=94.35  E-value=0.081  Score=41.77  Aligned_cols=31  Identities=32%  Similarity=0.365  Sum_probs=26.3

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvi   67 (163)
                      .++.|+|++|.+|+.+++.+.+ .+.+++.+.
T Consensus         9 k~vlVTGas~gIG~~ia~~l~~-~G~~V~~~~   39 (264)
T 2dtx_A            9 KVVIVTGASMGIGRAIAERFVD-EGSKVIDLS   39 (264)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHH-TTCEEEEEE
T ss_pred             CEEEEeCCCCHHHHHHHHHHHH-CCCEEEEEe
Confidence            5799999999999999999985 588877543

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=94.34  E-value=0.096  Score=40.43  Aligned_cols=35  Identities=20%  Similarity=0.154  Sum_probs=28.4

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid   68 (163)
                      ++.+|.|+|++|.+|+.+++.+.+..+.+++.+..
T Consensus         3 ~~k~vlITGasggIG~~~a~~L~~~~g~~V~~~~r   37 (276)
T 1wma_A            3 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTAR   37 (276)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEES
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHhcCCeEEEEeC
Confidence            34679999999999999999998646788776543

>3mw9_A GDH 1, glutamate dehydrogenase 1; allostery, inhibition, oxidoreducta; HET: GLU GTP NAD; 2.40A {Bos taurus} SCOP: c.2.1.7 c.58.1.1 PDB: 3mvo_A* 3mvq_A* 3qmu_A* 3etd_A* 3ete_A* 3etg_A* 1l1f_A 1nr1_A 1nr7_A 1nqt_A 1hwx_A* 1hwy_A* 1hwz_A*

Probab=94.29  E-value=0.16  Score=45.00  Aligned_cols=114  Identities=10%  Similarity=0.074  Sum_probs=70.5

Q ss_pred             CCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhhccCCC-------CCCcceeCCHHHHHh
Q 031216           32 PQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMVCDMEQ-------PLEIPVMSDLTMVLG   99 (163)
Q Consensus        32 ~~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~-----~~g~~~~~l~g~~~-------~~gi~v~~~l~ell~   99 (163)
                      +-+..||+|-| .|++|+..++.+. ..+.+++++.|+.     +.|.|..++.....       -.+...+.+  +++.
T Consensus       241 ~l~g~tVaVQG-~GNVG~~aa~~L~-e~GakVVavsDs~G~iyd~~Gid~~~l~~~k~~~g~i~~~~~a~~~~~--~il~  316 (501)
T 3mw9_A          241 GFGDKTFVVQG-FGNVGLHSMRYLH-RFGAKCITVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKIYEG--SILE  316 (501)
T ss_dssp             SSTTCEEEEEC-CSHHHHHHHHHHH-HTTCEEEEEECSSCEEECTTCCCHHHHHHHHHHHSSSTTCTTSEEECS--CGGG
T ss_pred             CcCCCEEEEEC-CCHHHHHHHHHHH-HCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCeecccCceeecc--cccc
Confidence            34568999999 7999999999887 4699999999952     45655544432110       011222222  4565


Q ss_pred             cccccCCccEEEEccCchhH-HHHHHHHHHcCCcEEEeCC--CCCHHHHHHHHHHhhhcCeEEcC
Q 031216          100 SISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMVSTG  161 (163)
Q Consensus       100 ~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigtt--g~~~e~~~~L~~~A~~~~Vv~tg  161 (163)
                           .++|+++=+...... .+++.   +-+..+|+|-.  ..+++..+.|    ++.||++.+
T Consensus       317 -----~~~DIliPcA~~n~I~~~na~---~l~akiV~EgAN~p~T~eA~~iL----~~rGIl~~P  369 (501)
T 3mw9_A          317 -----VDCDILIPAASEKQLTKSNAP---RVKAKIIAEGANGPTTPEADKIF----LERNIMVIP  369 (501)
T ss_dssp             -----SCCSEEEECSSSCCBCTTTGG---GCCCSEEECCSSSCBCHHHHHHH----HHTTCEEEC
T ss_pred             -----ccceEEeeccccCccCHhHHH---HcCceEEEeCCCCcCCHHHHHHH----HHCCCEEEC
Confidence                 599999976644333 23333   23688888776  2455543333    456777753

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*

Probab=94.29  E-value=0.3  Score=38.31  Aligned_cols=30  Identities=20%  Similarity=0.356  Sum_probs=25.8

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEE
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgv   66 (163)
                      .++.|+|++|.+|+.+++.+.+ .|.+++..
T Consensus         8 k~vlVTGas~gIG~~ia~~l~~-~G~~V~~~   37 (260)
T 1nff_A            8 KVALVSGGARGMGASHVRAMVA-EGAKVVFG   37 (260)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEEE
T ss_pred             CEEEEeCCCCHHHHHHHHHHHH-CCCEEEEE
Confidence            5799999999999999999985 58887754

>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*

Probab=94.29  E-value=0.66  Score=35.87  Aligned_cols=32  Identities=31%  Similarity=0.401  Sum_probs=26.6

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~   69 (163)
                      .++.|+|++|.+|+.+++.+.+ .+.+++.. ++
T Consensus         8 k~vlVTGas~gIG~~ia~~l~~-~G~~V~~~-~r   39 (249)
T 2ew8_A            8 KLAVITGGANGIGRAIAERFAV-EGADIAIA-DL   39 (249)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEEE-ES
T ss_pred             CEEEEeCCCcHHHHHHHHHHHH-CCCEEEEE-cC
Confidence            4699999999999999999985 58887754 44

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=94.28  E-value=0.14  Score=42.42  Aligned_cols=70  Identities=16%  Similarity=0.138  Sum_probs=43.1

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCc-EEEEEEecCCC---C--cchhhhcc-CCCCCCcceeCCHHHHHhcccccCCc
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSHSV---G--EDIGMVCD-MEQPLEIPVMSDLTMVLGSISQSKAR  107 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~-eLvgvid~~~~---g--~~~~~l~g-~~~~~gi~v~~~l~ell~~~~~~~~~  107 (163)
                      ++||+|+|+ |.||..++..+... ++ + +.++|....   |  .++..... ......+..++|+ +++      .++
T Consensus         4 ~~kI~VIGa-G~vG~~ia~~la~~-g~~~-v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al------~~a   73 (322)
T 1t2d_A            4 KAKIVLVGS-GMIGGVMATLIVQK-NLGD-VVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTY-DDL------AGA   73 (322)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHT-TCCE-EEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCG-GGG------TTC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhC-CCCe-EEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHh------CCC
Confidence            479999996 99999998888754 55 7 778885421   1  11111100 0012234445788 555      389


Q ss_pred             cEEEEcc
Q 031216          108 AVVIDFT  114 (163)
Q Consensus       108 DVVIDfT  114 (163)
                      |+||...
T Consensus        74 D~Vi~a~   80 (322)
T 1t2d_A           74 DVVIVTA   80 (322)
T ss_dssp             SEEEECC
T ss_pred             CEEEEeC
Confidence            9999653

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=94.25  E-value=0.073  Score=42.57  Aligned_cols=46  Identities=15%  Similarity=0.181  Sum_probs=26.6

Q ss_pred             ceeeeccCCCCC----CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216           22 KRFISCSTNPPQ----SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (163)
Q Consensus        22 ~~~~~~~~~~~~----~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~   69 (163)
                      .++.|++-.+..    ...++.|+|++|.+|+.+++.+.+ .|.+++. +++
T Consensus        16 ~~l~~~~~~~~~~~~l~gk~~lVTGas~GIG~aia~~la~-~G~~V~~-~~r   65 (281)
T 4dry_A           16 ENLYFQSMMAQGKGSGEGRIALVTGGGTGVGRGIAQALSA-EGYSVVI-TGR   65 (281)
T ss_dssp             ------------------CEEEETTTTSHHHHHHHHHHHH-TTCEEEE-EES
T ss_pred             ceEEEeccccccCCCCCCCEEEEeCCCCHHHHHHHHHHHH-CCCEEEE-EEC
Confidence            355665543222    235799999999999999999984 6888775 454

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=94.22  E-value=0.31  Score=37.97  Aligned_cols=32  Identities=9%  Similarity=0.214  Sum_probs=26.6

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~   69 (163)
                      .++.|+|++|.+|+.+++.+.+ .+.+++.+ ++
T Consensus         8 k~vlVTGas~gIG~~ia~~l~~-~G~~V~~~-~r   39 (260)
T 2z1n_A            8 KLAVVTAGSSGLGFASALELAR-NGARLLLF-SR   39 (260)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEEE-ES
T ss_pred             CEEEEECCCchHHHHHHHHHHH-CCCEEEEE-eC
Confidence            4799999999999999999985 58887754 44

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=94.21  E-value=0.048  Score=48.07  Aligned_cols=90  Identities=12%  Similarity=0.027  Sum_probs=54.6

Q ss_pred             CCCCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCcc
Q 031216           29 TNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA  108 (163)
Q Consensus        29 ~~~~~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~D  108 (163)
                      .+..-...+|+|+| .|+||+.+++.+... |+++. ++|+..  .+..+..    ..++. +.++++++.      ..|
T Consensus       251 ~~~~l~GktVgIIG-~G~IG~~vA~~l~~~-G~~Vi-v~d~~~--~~~~~a~----~~g~~-~~~l~ell~------~aD  314 (479)
T 1v8b_A          251 TDFLISGKIVVICG-YGDVGKGCASSMKGL-GARVY-ITEIDP--ICAIQAV----MEGFN-VVTLDEIVD------KGD  314 (479)
T ss_dssp             HCCCCTTSEEEEEC-CSHHHHHHHHHHHHH-TCEEE-EECSCH--HHHHHHH----TTTCE-ECCHHHHTT------TCS
T ss_pred             cccccCCCEEEEEe-eCHHHHHHHHHHHhC-cCEEE-EEeCCh--hhHHHHH----HcCCE-ecCHHHHHh------cCC
Confidence            34445567999999 799999999998865 78876 466532  1111111    22333 358999885      899


Q ss_pred             EEEEccC-chhHHHHHHHHHHcCCcEE
Q 031216          109 VVIDFTD-ASTVYDNVKQATAFGMRSV  134 (163)
Q Consensus       109 VVIDfT~-p~~~~~~~~~al~~G~~vV  134 (163)
                      +|+-.+. +..........++.|.-+|
T Consensus       315 iVi~~~~t~~lI~~~~l~~MK~gaili  341 (479)
T 1v8b_A          315 FFITCTGNVDVIKLEHLLKMKNNAVVG  341 (479)
T ss_dssp             EEEECCSSSSSBCHHHHTTCCTTCEEE
T ss_pred             EEEECCChhhhcCHHHHhhcCCCcEEE
Confidence            9997752 2222222223345555444

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=94.20  E-value=0.14  Score=40.67  Aligned_cols=32  Identities=22%  Similarity=0.266  Sum_probs=26.7

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~   69 (163)
                      .++.|+|++|.+|+.+++.+.+ .+.+++. +++
T Consensus        23 k~vlVTGas~gIG~~ia~~l~~-~G~~V~~-~~r   54 (277)
T 2rhc_B           23 EVALVTGATSGIGLEIARRLGK-EGLRVFV-CAR   54 (277)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHH-TTCEEEE-EES
T ss_pred             CEEEEECCCCHHHHHHHHHHHH-CCCEEEE-EeC
Confidence            5799999999999999999985 5888775 444

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=94.20  E-value=0.6  Score=37.08  Aligned_cols=88  Identities=22%  Similarity=0.217  Sum_probs=51.3

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCcc---EEEE
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA---VVID  112 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~D---VVID  112 (163)
                      .++.|+|++|.+|+.+++.+. ..+.+++.+..+.....   ++           ...++++..++. ....+   +..|
T Consensus        10 k~vlVTGas~GIG~aia~~l~-~~G~~V~~~~r~~~~~~---~~-----------~~~~~~~~~~~~-~~~~~~~~~~~D   73 (285)
T 3sc4_A           10 KTMFISGGSRGIGLAIAKRVA-ADGANVALVAKSAEPHP---KL-----------PGTIYTAAKEIE-EAGGQALPIVGD   73 (285)
T ss_dssp             CEEEEESCSSHHHHHHHHHHH-TTTCEEEEEESCCSCCS---SS-----------CCCHHHHHHHHH-HHTSEEEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHH-HCCCEEEEEECChhhhh---hh-----------hHHHHHHHHHHH-hcCCcEEEEECC
Confidence            579999999999999999998 45888775443321111   10           011222111100 01222   2347


Q ss_pred             ccCchhHHHHHHHHHHc--CCcEEEeCCC
Q 031216          113 FTDASTVYDNVKQATAF--GMRSVVYVPH  139 (163)
Q Consensus       113 fT~p~~~~~~~~~al~~--G~~vVigttg  139 (163)
                      .+.++...+.+....+.  ++.+++-..|
T Consensus        74 v~~~~~v~~~~~~~~~~~g~id~lvnnAg  102 (285)
T 3sc4_A           74 IRDGDAVAAAVAKTVEQFGGIDICVNNAS  102 (285)
T ss_dssp             TTSHHHHHHHHHHHHHHHSCCSEEEECCC
T ss_pred             CCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            78888777776666554  7888876654

>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=94.20  E-value=0.44  Score=36.88  Aligned_cols=30  Identities=33%  Similarity=0.521  Sum_probs=25.9

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEE
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgv   66 (163)
                      .++.|+|++|.+|+.+++.+.+ .+.+++.+
T Consensus         6 k~vlVTGas~giG~~ia~~l~~-~G~~V~~~   35 (245)
T 1uls_A            6 KAVLITGAAHGIGRATLELFAK-EGARLVAC   35 (245)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHH-TTCEEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHH-CCCEEEEE
Confidence            5799999999999999999874 68887754

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*

Probab=94.19  E-value=0.37  Score=36.88  Aligned_cols=31  Identities=26%  Similarity=0.332  Sum_probs=26.4

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvi   67 (163)
                      .+|.|+|++|.+|+.+++.+.+ .+.+++.+.
T Consensus         8 k~vlVTGasggiG~~~a~~l~~-~G~~V~~~~   38 (258)
T 3afn_B            8 KRVLITGSSQGIGLATARLFAR-AGAKVGLHG   38 (258)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHH-TTCEEEEEE
T ss_pred             CEEEEeCCCChHHHHHHHHHHH-CCCEEEEEC
Confidence            5799999999999999999985 588877543

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=94.19  E-value=0.21  Score=39.51  Aligned_cols=84  Identities=15%  Similarity=0.120  Sum_probs=48.7

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCcc-EEEEcc
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~D-VVIDfT  114 (163)
                      .++.|+|++|.+|+.+++.+. ..+.+++.+ ++..  .+..+..           ..+.+...     .++. +..|.+
T Consensus        28 k~~lVTGas~GIG~aia~~l~-~~G~~V~~~-~r~~--~~~~~~~-----------~~~~~~~~-----~~~~~~~~Dv~   87 (277)
T 4fc7_A           28 KVAFITGGGSGIGFRIAEIFM-RHGCHTVIA-SRSL--PRVLTAA-----------RKLAGATG-----RRCLPLSMDVR   87 (277)
T ss_dssp             CEEEEETTTSHHHHHHHHHHH-TTTCEEEEE-ESCH--HHHHHHH-----------HHHHHHHS-----SCEEEEECCTT
T ss_pred             CEEEEeCCCchHHHHHHHHHH-HCCCEEEEE-eCCH--HHHHHHH-----------HHHHHhcC-----CcEEEEEcCCC
Confidence            579999999999999999998 568888754 4321  1111110           01111110     1222 234677


Q ss_pred             CchhHHHHHHHHHHc--CCcEEEeCCC
Q 031216          115 DASTVYDNVKQATAF--GMRSVVYVPH  139 (163)
Q Consensus       115 ~p~~~~~~~~~al~~--G~~vVigttg  139 (163)
                      .++...+.+..+.+.  ++.+++-..|
T Consensus        88 ~~~~v~~~~~~~~~~~g~id~lv~nAg  114 (277)
T 4fc7_A           88 APPAVMAAVDQALKEFGRIDILINCAA  114 (277)
T ss_dssp             CHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCc
Confidence            777766666555544  6777775554

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2

Probab=94.17  E-value=0.23  Score=38.58  Aligned_cols=34  Identities=15%  Similarity=0.175  Sum_probs=27.1

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCC--cEEEEEEe
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARG--MEVAGAID   68 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~--~eLvgvid   68 (163)
                      +.+|.|+|++|.+|+.+++.+.+...  .+++.+..
T Consensus        21 ~k~vlITGasggIG~~la~~L~~~G~~~~~V~~~~r   56 (267)
T 1sny_A           21 MNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCR   56 (267)
T ss_dssp             CSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEES
T ss_pred             CCEEEEECCCCcHHHHHHHHHHhcCCCCcEEEEEec
Confidence            46899999999999999999985432  78776543

>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A*

Probab=94.15  E-value=0.049  Score=44.67  Aligned_cols=71  Identities=13%  Similarity=0.163  Sum_probs=43.9

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCc-------EEEEEEecCC-----CCcchhhhccC--CCCCCcceeCCHHHHHhc
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGM-------EVAGAIDSHS-----VGEDIGMVCDM--EQPLEIPVMSDLTMVLGS  100 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~-------eLvgvid~~~-----~g~~~~~l~g~--~~~~gi~v~~~l~ell~~  100 (163)
                      ++||.|+|++|.+|+.++..+.. .+.       +++. +|+..     .|. ..++...  .-..++...+++.+++. 
T Consensus         4 ~mkVlVtGaaGfIG~~l~~~L~~-~g~~~~~~~~ev~l-~D~~~~~~~~~g~-~~dl~~~~~~~~~di~~~~~~~~a~~-   79 (327)
T 1y7t_A            4 PVRVAVTGAAGQIGYSLLFRIAA-GEMLGKDQPVILQL-LEIPQAMKALEGV-VMELEDCAFPLLAGLEATDDPKVAFK-   79 (327)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHT-TTTTCTTCCEEEEE-ECCGGGHHHHHHH-HHHHHTTTCTTEEEEEEESCHHHHTT-
T ss_pred             CCEEEEECCCCHHHHHHHHHHHh-CCCCCCCCCCEEEE-EeCCCchhhccch-hhhhhcccccccCCeEeccChHHHhC-
Confidence            47999999999999999999876 443       6664 67531     110 1112110  00012334467777774 


Q ss_pred             ccccCCccEEEEcc
Q 031216          101 ISQSKARAVVIDFT  114 (163)
Q Consensus       101 ~~~~~~~DVVIDfT  114 (163)
                           ++|+||.+.
T Consensus        80 -----~~D~Vih~A   88 (327)
T 1y7t_A           80 -----DADYALLVG   88 (327)
T ss_dssp             -----TCSEEEECC
T ss_pred             -----CCCEEEECC
Confidence                 899999864

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=94.14  E-value=0.045  Score=47.75  Aligned_cols=88  Identities=17%  Similarity=0.179  Sum_probs=53.4

Q ss_pred             cCCCCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCc
Q 031216           28 STNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKAR  107 (163)
Q Consensus        28 ~~~~~~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~  107 (163)
                      +++..-.-.+|+|+| +|.+|+.+++.+.. -|+++. ++|++..  ...+..    ..+.. +.++++++.      ..
T Consensus       213 at~~~L~GktV~ViG-~G~IGk~vA~~Lra-~Ga~Vi-v~D~dp~--ra~~A~----~~G~~-v~~Leeal~------~A  276 (435)
T 3gvp_A          213 TTDMMFGGKQVVVCG-YGEVGKGCCAALKA-MGSIVY-VTEIDPI--CALQAC----MDGFR-LVKLNEVIR------QV  276 (435)
T ss_dssp             HHCCCCTTCEEEEEC-CSHHHHHHHHHHHH-TTCEEE-EECSCHH--HHHHHH----HTTCE-ECCHHHHTT------TC
T ss_pred             hhCceecCCEEEEEe-eCHHHHHHHHHHHH-CCCEEE-EEeCChh--hhHHHH----HcCCE-eccHHHHHh------cC
Confidence            344444457999999 69999999999874 588865 4664321  111100    12322 358999885      89


Q ss_pred             cEEEEccC-chhHHHHHHHHHHcCC
Q 031216          108 AVVIDFTD-ASTVYDNVKQATAFGM  131 (163)
Q Consensus       108 DVVIDfT~-p~~~~~~~~~al~~G~  131 (163)
                      |+|+.++- +..........++.|.
T Consensus       277 DIVi~atgt~~lI~~e~l~~MK~ga  301 (435)
T 3gvp_A          277 DIVITCTGNKNVVTREHLDRMKNSC  301 (435)
T ss_dssp             SEEEECSSCSCSBCHHHHHHSCTTE
T ss_pred             CEEEECCCCcccCCHHHHHhcCCCc
Confidence            99998652 3333333344455554

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=94.14  E-value=0.33  Score=38.53  Aligned_cols=32  Identities=31%  Similarity=0.477  Sum_probs=26.7

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~   69 (163)
                      .++.|+|++|.+|+.+++.+.+ .+.+++.. ++
T Consensus        33 k~~lVTGas~GIG~aia~~la~-~G~~V~~~-~r   64 (276)
T 3r1i_A           33 KRALITGASTGIGKKVALAYAE-AGAQVAVA-AR   64 (276)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHH-TTCEEEEE-ES
T ss_pred             CEEEEeCCCCHHHHHHHHHHHH-CCCEEEEE-eC
Confidence            5799999999999999999985 58887754 44

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=94.14  E-value=0.13  Score=39.77  Aligned_cols=32  Identities=28%  Similarity=0.302  Sum_probs=26.6

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~   69 (163)
                      .++.|+|++|.+|+.+++.+.+ .+.+++. +++
T Consensus        10 k~vlITGas~giG~~~a~~l~~-~G~~V~~-~~r   41 (253)
T 3qiv_A           10 KVGIVTGSGGGIGQAYAEALAR-EGAAVVV-ADI   41 (253)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEE-EES
T ss_pred             CEEEEECCCChHHHHHHHHHHH-CCCEEEE-EcC
Confidence            5799999999999999999984 5888765 454

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*

Probab=94.14  E-value=0.12  Score=42.50  Aligned_cols=68  Identities=22%  Similarity=0.137  Sum_probs=42.0

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEE
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI  111 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVI  111 (163)
                      |.||+|+| .|..|++++..+. .-|++++.+ |+... .....++..  ..-++.+++.+.++..   .+++|+|+
T Consensus         1 MK~I~ilG-gg~~g~~~~~~Ak-~~G~~vv~v-d~~~~-~~~~~~aD~--~~~~~~~~d~~~~~~~---~~~~D~v~   68 (363)
T 4ffl_A            1 MKTICLVG-GKLQGFEAAYLSK-KAGMKVVLV-DKNPQ-ALIRNYADE--FYCFDVIKEPEKLLEL---SKRVDAVL   68 (363)
T ss_dssp             CCEEEEEC-CSHHHHHHHHHHH-HTTCEEEEE-ESCTT-CTTTTTSSE--EEECCTTTCHHHHHHH---HTSSSEEE
T ss_pred             CCEEEEEC-CCHHHHHHHHHHH-HCCCEEEEE-eCCCC-ChhHhhCCE--EEECCCCcCHHHHHHH---hcCCCEEE
Confidence            67999999 5999999998876 569999865 64321 111122110  1123334566665432   26899877

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=94.14  E-value=0.094  Score=44.22  Aligned_cols=34  Identities=24%  Similarity=0.303  Sum_probs=26.9

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~   70 (163)
                      ...||+|+| .|.+|+.+++.+.. -+++ |-++|+.
T Consensus       171 ~g~~V~ViG-aG~iG~~aa~~a~~-~Ga~-V~~~d~~  204 (384)
T 1l7d_A          171 PPARVLVFG-VGVAGLQAIATAKR-LGAV-VMATDVR  204 (384)
T ss_dssp             CCCEEEEEC-CSHHHHHHHHHHHH-TTCE-EEEECSC
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHH-CCCE-EEEEeCC
Confidence            457999999 59999999998874 5677 5567854

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=94.13  E-value=0.56  Score=37.72  Aligned_cols=32  Identities=31%  Similarity=0.476  Sum_probs=26.6

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~   69 (163)
                      .++.|+|++|.+|+.+++.+.+ .|.+++.+ ++
T Consensus        42 k~vlVTGas~GIG~aia~~la~-~G~~V~~~-~r   73 (293)
T 3rih_A           42 RSVLVTGGTKGIGRGIATVFAR-AGANVAVA-AR   73 (293)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHH-TTCEEEEE-ES
T ss_pred             CEEEEeCCCcHHHHHHHHHHHH-CCCEEEEE-EC
Confidence            4799999999999999999984 68887754 54

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=94.10  E-value=0.3  Score=39.81  Aligned_cols=68  Identities=21%  Similarity=0.203  Sum_probs=42.1

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCc-EEEEEEecCCC---C--cchhh---hccCCCCCCcceeCCHHHHHhcccccC
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSHSV---G--EDIGM---VCDMEQPLEIPVMSDLTMVLGSISQSK  105 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~-eLvgvid~~~~---g--~~~~~---l~g~~~~~gi~v~~~l~ell~~~~~~~  105 (163)
                      ++||+|+|+ |.||..++..+... ++ + +.++|+...   +  .+...   ..+.  ...+..++++ +.+      .
T Consensus         4 ~~kI~VIGa-G~~G~~ia~~la~~-g~~~-V~l~D~~~~~~~~~~~~l~~~~~~~~~--~~~i~~t~d~-~a~------~   71 (317)
T 2ewd_A            4 RRKIAVIGS-GQIGGNIAYIVGKD-NLAD-VVLFDIAEGIPQGKALDITHSMVMFGS--TSKVIGTDDY-ADI------S   71 (317)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHH-TCCE-EEEECSSSSHHHHHHHHHHHHHHHHTC--CCCEEEESCG-GGG------T
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhC-CCce-EEEEeCCchHHHHHHHHHHhhhhhcCC--CcEEEECCCH-HHh------C
Confidence            479999995 99999999988754 55 7 557785431   1  01100   0100  2234455777 455      3


Q ss_pred             CccEEEEcc
Q 031216          106 ARAVVIDFT  114 (163)
Q Consensus       106 ~~DVVIDfT  114 (163)
                      ++|+||...
T Consensus        72 ~aDiVi~av   80 (317)
T 2ewd_A           72 GSDVVIITA   80 (317)
T ss_dssp             TCSEEEECC
T ss_pred             CCCEEEEeC
Confidence            899999654

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=94.09  E-value=0.29  Score=38.64  Aligned_cols=32  Identities=28%  Similarity=0.307  Sum_probs=26.6

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~   69 (163)
                      .++.|+|++|.+|+.+++.+.+ .+.+++. +++
T Consensus        12 k~vlVTGas~gIG~aia~~l~~-~G~~V~~-~~r   43 (271)
T 3tzq_B           12 KVAIITGACGGIGLETSRVLAR-AGARVVL-ADL   43 (271)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEE-EEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHH-CCCEEEE-EcC
Confidence            5799999999999999999984 6888764 454

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=94.08  E-value=0.15  Score=41.40  Aligned_cols=98  Identities=15%  Similarity=0.125  Sum_probs=53.6

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCccee--CCHHHHHhcccccCCccEEEEc
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAVVIDF  113 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~--~~l~ell~~~~~~~~~DVVIDf  113 (163)
                      -+|.|.|+ |.+|...++.+. .-+...+.++++...-.+...-+|.   ..+.-+  .+..+....+.....+|+|+|+
T Consensus       162 ~~VlV~Ga-G~vG~~aiq~ak-~~G~~~vi~~~~~~~k~~~a~~lGa---~~~i~~~~~~~~~~~~~~~~~~g~d~v~d~  236 (346)
T 4a2c_A          162 KNVIIIGA-GTIGLLAIQCAV-ALGAKSVTAIDISSEKLALAKSFGA---MQTFNSSEMSAPQMQSVLRELRFNQLILET  236 (346)
T ss_dssp             SEEEEECC-SHHHHHHHHHHH-HTTCSEEEEEESCHHHHHHHHHTTC---SEEEETTTSCHHHHHHHHGGGCSSEEEEEC
T ss_pred             CEEEEECC-CCcchHHHHHHH-HcCCcEEEEEechHHHHHHHHHcCC---eEEEeCCCCCHHHHHHhhcccCCccccccc
Confidence            57999996 999998887765 5677666666743211122222221   111112  2334433322224578999999


Q ss_pred             cCchhHHHHHHHHHHcCCc-EEEeCC
Q 031216          114 TDASTVYDNVKQATAFGMR-SVVYVP  138 (163)
Q Consensus       114 T~p~~~~~~~~~al~~G~~-vVigtt  138 (163)
                      +-.....+.+..+++.|-. +++|..
T Consensus       237 ~G~~~~~~~~~~~l~~~G~~v~~g~~  262 (346)
T 4a2c_A          237 AGVPQTVELAVEIAGPHAQLALVGTL  262 (346)
T ss_dssp             SCSHHHHHHHHHHCCTTCEEEECCCC
T ss_pred             ccccchhhhhhheecCCeEEEEEecc
Confidence            8644455555555555444 444544

>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=94.07  E-value=0.16  Score=39.38  Aligned_cols=35  Identities=20%  Similarity=0.319  Sum_probs=28.4

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~   69 (163)
                      ...+|.|+|++|.+|+.+++.+.+ .+.+++.+.++
T Consensus        12 ~~k~vlITGas~giG~~ia~~l~~-~G~~v~~~~~~   46 (256)
T 3ezl_A           12 SQRIAYVTGGMGGIGTSICQRLHK-DGFRVVAGCGP   46 (256)
T ss_dssp             -CEEEEETTTTSHHHHHHHHHHHH-TTEEEEEEECT
T ss_pred             CCCEEEEECCCChHHHHHHHHHHH-CCCEEEEEeCC
Confidence            347899999999999999999984 58888765543

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=94.05  E-value=0.064  Score=44.84  Aligned_cols=71  Identities=18%  Similarity=0.150  Sum_probs=42.3

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCc-EEEEEEecCC---CC--cchhhhccCCCCCCcceeCCHHHHHhcccccCCc
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSHS---VG--EDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKAR  107 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~-eLvgvid~~~---~g--~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~  107 (163)
                      .+.||+|+|+ |.||..++..+...+-+ +|+ ++|...   .|  .|+.+....  ..++.++.+..+.+      .++
T Consensus         8 ~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~-l~D~~~~k~~g~a~DL~~~~~~--~~~~~i~~~~~~a~------~~a   77 (326)
T 3vku_A            8 DHQKVILVGD-GAVGSSYAYAMVLQGIAQEIG-IVDIFKDKTKGDAIDLEDALPF--TSPKKIYSAEYSDA------KDA   77 (326)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHHTCCSEEE-EECSCHHHHHHHHHHHHTTGGG--SCCCEEEECCGGGG------TTC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCCeEE-EEeCChHHHHHHHhhHhhhhhh--cCCcEEEECcHHHh------cCC
Confidence            3579999995 99999999988765544 554 678531   11  122221111  12344554444445      489


Q ss_pred             cEEEEcc
Q 031216          108 AVVIDFT  114 (163)
Q Consensus       108 DVVIDfT  114 (163)
                      |+||...
T Consensus        78 DiVvi~a   84 (326)
T 3vku_A           78 DLVVITA   84 (326)
T ss_dssp             SEEEECC
T ss_pred             CEEEECC
Confidence            9988653

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}

Probab=94.04  E-value=0.46  Score=36.94  Aligned_cols=32  Identities=44%  Similarity=0.472  Sum_probs=26.7

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~   69 (163)
                      .++.|+|++|.+|+.+++.+.+ .+.+++.+ ++
T Consensus        13 k~vlVTGas~gIG~~ia~~l~~-~G~~V~~~-~r   44 (263)
T 3ak4_A           13 RKAIVTGGSKGIGAAIARALDK-AGATVAIA-DL   44 (263)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEEE-ES
T ss_pred             CEEEEeCCCChHHHHHHHHHHH-CCCEEEEE-eC
Confidence            5799999999999999999985 67887754 44

>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A

Probab=94.03  E-value=0.32  Score=44.32  Aligned_cols=91  Identities=12%  Similarity=0.180  Sum_probs=56.5

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC-----C-------cchh--------hhc-cCCCCCCcce--e-
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-----G-------EDIG--------MVC-DMEQPLEIPV--M-   91 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~-----g-------~~~~--------~l~-g~~~~~gi~v--~-   91 (163)
                      .||+|+| .|.+|..+++.+. ..|+.=+.++|.+..     +       .+++        +.+ .+  ..++.+  + 
T Consensus        18 s~VlVVG-aGGLGsevak~La-~aGVG~ItlvD~D~Ve~SNLnRQflf~~~dVGk~KAeaaa~~L~~i--NP~v~V~a~~   93 (640)
T 1y8q_B           18 GRVLVVG-AGGIGCELLKNLV-LTGFSHIDLIDLDTIDVSNLNRQFLFQKKHVGRSKAQVAKESVLQF--YPKANIVAYH   93 (640)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHH-HHTCCEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHTT--CTTCEEEEEE
T ss_pred             CeEEEEC-cCHHHHHHHHHHH-HcCCCeEEEecCCEEChhhcCCCcCCChhHcChHHHHHHHHHHHHH--CCCCeEEEEe
Confidence            6899999 5999999999988 567866778884311     0       1111        000 11  112222  1 


Q ss_pred             CCH------HHHHhcccccCCccEEEEccCchhH-HHHHHHHHHcCCcEEEe
Q 031216           92 SDL------TMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVY  136 (163)
Q Consensus        92 ~~l------~ell~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVig  136 (163)
                      ..+      ++.+      ..+|+|||++..-.. ...-..|.++++|+|.+
T Consensus        94 ~~i~~~~~~~~~~------~~~DlVvda~Dn~~aR~~ln~~c~~~~iPlI~~  139 (640)
T 1y8q_B           94 DSIMNPDYNVEFF------RQFILVMNALDNRAARNHVNRMCLAADVPLIES  139 (640)
T ss_dssp             SCTTSTTSCHHHH------TTCSEEEECCSCHHHHHHHHHHHHHHTCCEEEE
T ss_pred             cccchhhhhHhhh------cCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEE
Confidence            222      3444      389999998844444 45557889999999854

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A*

Probab=94.03  E-value=0.14  Score=42.35  Aligned_cols=70  Identities=21%  Similarity=0.239  Sum_probs=41.8

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhc-CCcEEEEEEecCC--CCcchhhhccCCCCCCccee----CCHHHHHhcccccCCcc
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAIDSHS--VGEDIGMVCDMEQPLEIPVM----SDLTMVLGSISQSKARA  108 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~-~~~eLvgvid~~~--~g~~~~~l~g~~~~~gi~v~----~~l~ell~~~~~~~~~D  108 (163)
                      +||+|+||+|.+|..++..+... +-..=+.++|...  .|+ +-++...  +....+.    ++..+.+      .++|
T Consensus         1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~~~~G~-a~Dl~~~--~~~~~v~~~~~~~~~~~~------~~aD   71 (312)
T 3hhp_A            1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGV-AVDLSHI--PTAVKIKGFSGEDATPAL------EGAD   71 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSSTTHHHH-HHHHHTS--CSSEEEEEECSSCCHHHH------TTCS
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCCCchhH-HHHhhCC--CCCceEEEecCCCcHHHh------CCCC
Confidence            58999998899999999888765 3333344778543  121 1222221  2233332    2445555      3899


Q ss_pred             EEEEcc
Q 031216          109 VVIDFT  114 (163)
Q Consensus       109 VVIDfT  114 (163)
                      +||...
T Consensus        72 ivii~a   77 (312)
T 3hhp_A           72 VVLISA   77 (312)
T ss_dssp             EEEECC
T ss_pred             EEEEeC
Confidence            988543

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=94.00  E-value=0.22  Score=38.62  Aligned_cols=32  Identities=25%  Similarity=0.318  Sum_probs=26.7

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~   69 (163)
                      .++.|+|++|.+|+.+++.+.+ .+.+++. +++
T Consensus        10 k~vlITGas~gIG~~~a~~l~~-~G~~V~~-~~r   41 (261)
T 3n74_A           10 KVALITGAGSGFGEGMAKRFAK-GGAKVVI-VDR   41 (261)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEE-EES
T ss_pred             CEEEEECCCchHHHHHHHHHHH-CCCEEEE-EcC
Confidence            5799999999999999999984 5888775 454

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=94.00  E-value=0.072  Score=44.30  Aligned_cols=96  Identities=17%  Similarity=0.178  Sum_probs=53.6

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCc-EEEEEEecCCCCcchhhhccCCCCCCccee----CCHHHHHhcccccCCccEE
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSHSVGEDIGMVCDMEQPLEIPVM----SDLTMVLGSISQSKARAVV  110 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~-eLvgvid~~~~g~~~~~l~g~~~~~gi~v~----~~l~ell~~~~~~~~~DVV  110 (163)
                      -+|+|+|+ |.+|...++.+. .-+. ++++ +++...-.+...-+|..   .+.-+    .++.+.+.++..+ .+|+|
T Consensus       195 ~~VlV~Ga-G~vG~~a~q~a~-~~Ga~~Vi~-~~~~~~~~~~a~~lGa~---~vi~~~~~~~~~~~~i~~~~~g-g~D~v  267 (378)
T 3uko_A          195 SNVAIFGL-GTVGLAVAEGAK-TAGASRIIG-IDIDSKKYETAKKFGVN---EFVNPKDHDKPIQEVIVDLTDG-GVDYS  267 (378)
T ss_dssp             CCEEEECC-SHHHHHHHHHHH-HHTCSCEEE-ECSCTTHHHHHHTTTCC---EEECGGGCSSCHHHHHHHHTTS-CBSEE
T ss_pred             CEEEEECC-CHHHHHHHHHHH-HcCCCeEEE-EcCCHHHHHHHHHcCCc---EEEccccCchhHHHHHHHhcCC-CCCEE
Confidence            47999997 999999888776 5577 5665 45322111222212210   11111    2344433322112 79999


Q ss_pred             EEccCchhHHHHHHHHHHc--CCcEEEeCC
Q 031216          111 IDFTDASTVYDNVKQATAF--GMRSVVYVP  138 (163)
Q Consensus       111 IDfT~p~~~~~~~~~al~~--G~~vVigtt  138 (163)
                      ||++-.....+.+..+++.  |.-+++|.+
T Consensus       268 id~~g~~~~~~~~~~~l~~g~G~iv~~G~~  297 (378)
T 3uko_A          268 FECIGNVSVMRAALECCHKGWGTSVIVGVA  297 (378)
T ss_dssp             EECSCCHHHHHHHHHTBCTTTCEEEECSCC
T ss_pred             EECCCCHHHHHHHHHHhhccCCEEEEEccc
Confidence            9998665555666566664  565666653

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=94.00  E-value=0.072  Score=47.03  Aligned_cols=87  Identities=14%  Similarity=0.116  Sum_probs=53.2

Q ss_pred             CCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEE
Q 031216           32 PQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI  111 (163)
Q Consensus        32 ~~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVI  111 (163)
                      ...-.+|+|+| .|.||+.+++.+.. -+++++ ++|+..  .+.....    ..|+. +.++++++.      .+|+||
T Consensus       271 ~l~GktV~IiG-~G~IG~~~A~~lka-~Ga~Vi-v~d~~~--~~~~~A~----~~Ga~-~~~l~e~l~------~aDvVi  334 (494)
T 3ce6_A          271 LIGGKKVLICG-YGDVGKGCAEAMKG-QGARVS-VTEIDP--INALQAM----MEGFD-VVTVEEAIG------DADIVV  334 (494)
T ss_dssp             CCTTCEEEEEC-CSHHHHHHHHHHHH-TTCEEE-EECSCH--HHHHHHH----HTTCE-ECCHHHHGG------GCSEEE
T ss_pred             CCCcCEEEEEc-cCHHHHHHHHHHHH-CCCEEE-EEeCCH--HHHHHHH----HcCCE-EecHHHHHh------CCCEEE
Confidence            34457899999 69999999999874 578765 566532  1111111    22333 347888764      899999


Q ss_pred             EccCchh-HHHHHHHHHHcCCcEE
Q 031216          112 DFTDAST-VYDNVKQATAFGMRSV  134 (163)
Q Consensus       112 DfT~p~~-~~~~~~~al~~G~~vV  134 (163)
                      +++.... ........++.|--++
T Consensus       335 ~atgt~~~i~~~~l~~mk~ggilv  358 (494)
T 3ce6_A          335 TATGNKDIIMLEHIKAMKDHAILG  358 (494)
T ss_dssp             ECSSSSCSBCHHHHHHSCTTCEEE
T ss_pred             ECCCCHHHHHHHHHHhcCCCcEEE
Confidence            8874333 3323444556665544

>4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A*

Probab=93.95  E-value=0.33  Score=37.96  Aligned_cols=33  Identities=27%  Similarity=0.426  Sum_probs=27.5

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~   69 (163)
                      .+|.|+|++|.+|+.+++.+.+ .+.+++...++
T Consensus        27 k~vlVTGas~gIG~~la~~l~~-~G~~v~i~~~r   59 (267)
T 4iiu_A           27 RSVLVTGASKGIGRAIARQLAA-DGFNIGVHYHR   59 (267)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHH-TTCEEEEEESS
T ss_pred             CEEEEECCCChHHHHHHHHHHH-CCCEEEEEeCC
Confidence            4799999999999999999874 68888765554

>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=93.95  E-value=0.25  Score=37.52  Aligned_cols=32  Identities=22%  Similarity=0.293  Sum_probs=26.4

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCC--cEEEEEEe
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARG--MEVAGAID   68 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~--~eLvgvid   68 (163)
                      .+|.|+|++|.+|+.+++.+.+ .+  .+++.+..
T Consensus         4 k~vlItGasggiG~~la~~l~~-~g~~~~V~~~~r   37 (250)
T 1yo6_A            4 GSVVVTGANRGIGLGLVQQLVK-DKNIRHIIATAR   37 (250)
T ss_dssp             SEEEESSCSSHHHHHHHHHHHT-CTTCCEEEEEES
T ss_pred             CEEEEecCCchHHHHHHHHHHh-cCCCcEEEEEec
Confidence            5799999999999999999985 45  78776543

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=93.94  E-value=0.2  Score=41.48  Aligned_cols=70  Identities=21%  Similarity=0.257  Sum_probs=43.1

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCc-EEEEEEecCCC---C--cchhhhcc-CCCCCCcceeCCHHHHHhcccccCCc
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSHSV---G--EDIGMVCD-MEQPLEIPVMSDLTMVLGSISQSKAR  107 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~-eLvgvid~~~~---g--~~~~~l~g-~~~~~gi~v~~~l~ell~~~~~~~~~  107 (163)
                      ++||+|+|+ |.||..++..+.. .++ + +.++|....   +  .+...... ......+..++|+ +++      .++
T Consensus        14 ~~kI~ViGa-G~vG~~iA~~la~-~g~~~-V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al------~~a   83 (328)
T 2hjr_A           14 RKKISIIGA-GQIGSTIALLLGQ-KDLGD-VYMFDIIEGVPQGKALDLNHCMALIGSPAKIFGENNY-EYL------QNS   83 (328)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHH-TTCCE-EEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGG------TTC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHh-CCCCe-EEEEECCHHHHHHHHHHHHhHhhccCCCCEEEECCCH-HHH------CCC
Confidence            369999996 9999999988774 466 7 667885421   1  11111110 0002235555788 555      389


Q ss_pred             cEEEEcc
Q 031216          108 AVVIDFT  114 (163)
Q Consensus       108 DVVIDfT  114 (163)
                      |+||...
T Consensus        84 D~VI~av   90 (328)
T 2hjr_A           84 DVVIITA   90 (328)
T ss_dssp             SEEEECC
T ss_pred             CEEEEcC
Confidence            9999654

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=93.94  E-value=0.87  Score=35.82  Aligned_cols=93  Identities=19%  Similarity=0.275  Sum_probs=51.5

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-CCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCcc---EEE
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-SVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA---VVI  111 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~-~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~D---VVI  111 (163)
                      .++.|+|++|.+|+.+++.+. ..+.+++.+ ++. ...... .+..    ..   ...++++...+. .....   +..
T Consensus        16 k~~lVTGas~gIG~a~a~~la-~~G~~V~~~-~r~~~~~~~~-~~~~----~~---~~~~~~~~~~~~-~~~~~~~~~~~   84 (280)
T 3pgx_A           16 RVAFITGAARGQGRSHAVRLA-AEGADIIAC-DICAPVSASV-TYAP----AS---PEDLDETARLVE-DQGRKALTRVL   84 (280)
T ss_dssp             CEEEEESTTSHHHHHHHHHHH-HTTCEEEEE-ECCSCCCTTC-CSCC----CC---HHHHHHHHHHHH-TTTCCEEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHH-HCCCEEEEE-eccccccccc-cccc----cC---HHHHHHHHHHHH-hcCCeEEEEEc
Confidence            569999999999999999998 468888754 432 110000 0000    00   011122111100 01222   235


Q ss_pred             EccCchhHHHHHHHHHHc--CCcEEEeCCC
Q 031216          112 DFTDASTVYDNVKQATAF--GMRSVVYVPH  139 (163)
Q Consensus       112 DfT~p~~~~~~~~~al~~--G~~vVigttg  139 (163)
                      |.+.++...+.+..+.+.  ++.+++-..|
T Consensus        85 Dv~~~~~v~~~~~~~~~~~g~id~lvnnAg  114 (280)
T 3pgx_A           85 DVRDDAALRELVADGMEQFGRLDVVVANAG  114 (280)
T ss_dssp             CTTCHHHHHHHHHHHHHHHCCCCEEEECCC
T ss_pred             CCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            778888777776665554  6888876654

>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A

Probab=93.92  E-value=0.34  Score=37.09  Aligned_cols=30  Identities=27%  Similarity=0.287  Sum_probs=25.9

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEE
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgv   66 (163)
                      .++.|+|++|.+|+.+++.+.+ .+.+++.+
T Consensus         7 k~vlVtGasggiG~~~a~~l~~-~G~~V~~~   36 (251)
T 1zk4_A            7 KVAIITGGTLGIGLAIATKFVE-EGAKVMIT   36 (251)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHH-TTCEEEEE
T ss_pred             cEEEEeCCCChHHHHHHHHHHH-CCCEEEEE
Confidence            5799999999999999999985 58887754

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=93.91  E-value=0.28  Score=38.20  Aligned_cols=32  Identities=22%  Similarity=0.281  Sum_probs=26.5

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~   69 (163)
                      .++.|+|++|.+|+.+++.+.+ .+.+++.. ++
T Consensus         8 k~vlVTGas~gIG~~ia~~l~~-~G~~V~~~-~r   39 (263)
T 3ai3_A            8 KVAVITGSSSGIGLAIAEGFAK-EGAHIVLV-AR   39 (263)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHH-TTCEEEEE-ES
T ss_pred             CEEEEECCCchHHHHHHHHHHH-CCCEEEEE-cC
Confidence            4699999999999999999985 57887754 44

>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}

Probab=93.89  E-value=0.34  Score=37.07  Aligned_cols=30  Identities=30%  Similarity=0.282  Sum_probs=25.5

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEE
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgv   66 (163)
                      .++.|+|++|.+|+.+++.+.+ .+.+++.+
T Consensus         3 k~vlItGasggiG~~~a~~l~~-~G~~V~~~   32 (250)
T 2cfc_A            3 RVAIVTGASSGNGLAIATRFLA-RGDRVAAL   32 (250)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEEE
T ss_pred             CEEEEeCCCchHHHHHHHHHHH-CCCEEEEE
Confidence            4689999999999999999985 57887754

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=93.89  E-value=0.23  Score=39.16  Aligned_cols=86  Identities=14%  Similarity=0.122  Sum_probs=51.3

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCcc-EEEEc
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDF  113 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~D-VVIDf  113 (163)
                      ..+|.|+|++|.+|+.+++.+.+ .|.+++.+..+..   +..+.              .+++...  ...++. +..|.
T Consensus        12 ~k~vlITGas~GIG~~~a~~L~~-~G~~V~~~~r~~~---~~~~~--------------~~~l~~~--~~~~~~~~~~Dl   71 (311)
T 3o26_A           12 RRCAVVTGGNKGIGFEICKQLSS-NGIMVVLTCRDVT---KGHEA--------------VEKLKNS--NHENVVFHQLDV   71 (311)
T ss_dssp             CCEEEESSCSSHHHHHHHHHHHH-TTCEEEEEESCHH---HHHHH--------------HHHHHTT--TCCSEEEEECCT
T ss_pred             CcEEEEecCCchHHHHHHHHHHH-CCCEEEEEeCCHH---HHHHH--------------HHHHHhc--CCCceEEEEccC
Confidence            35799999999999999999985 5888775443211   11110              1111110  001222 23578


Q ss_pred             cCc-hhHHHHHHHHHHc--CCcEEEeCCCC
Q 031216          114 TDA-STVYDNVKQATAF--GMRSVVYVPHI  140 (163)
Q Consensus       114 T~p-~~~~~~~~~al~~--G~~vVigttg~  140 (163)
                      +.+ +.....+....+.  ++.+|+-..|.
T Consensus        72 ~~~~~~v~~~~~~~~~~~g~iD~lv~nAg~  101 (311)
T 3o26_A           72 TDPIATMSSLADFIKTHFGKLDILVNNAGV  101 (311)
T ss_dssp             TSCHHHHHHHHHHHHHHHSSCCEEEECCCC
T ss_pred             CCcHHHHHHHHHHHHHhCCCCCEEEECCcc
Confidence            888 6666665555444  78999877764

>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*

Probab=93.88  E-value=0.58  Score=37.27  Aligned_cols=32  Identities=28%  Similarity=0.361  Sum_probs=26.7

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~   69 (163)
                      .+|.|.|+++++|+.+++.+. ..|.+++. +|+
T Consensus         3 K~vlVTGas~GIG~aia~~la-~~Ga~V~~-~~~   34 (247)
T 3ged_A            3 RGVIVTGGGHGIGKQICLDFL-EAGDKVCF-IDI   34 (247)
T ss_dssp             CEEEEESTTSHHHHHHHHHHH-HTTCEEEE-EES
T ss_pred             CEEEEecCCCHHHHHHHHHHH-HCCCEEEE-EeC
Confidence            468999999999999999998 57888764 564

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=93.87  E-value=0.075  Score=43.74  Aligned_cols=35  Identities=26%  Similarity=0.387  Sum_probs=25.8

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCc-EEEEEEecC
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSH   70 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~-eLvgvid~~   70 (163)
                      .++||+|+|+ |.||..++..+....-. +|+ ++|..
T Consensus         5 ~~~kI~IIGa-G~vG~sla~~l~~~~~~~ev~-l~Di~   40 (316)
T 1ldn_A            5 GGARVVVIGA-GFVGASYVFALMNQGIADEIV-LIDAN   40 (316)
T ss_dssp             TSCEEEEECC-SHHHHHHHHHHHHHTCCSEEE-EECSS
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHhCCCCCEEE-EEeCC
Confidence            4579999996 99999999887654322 555 57853

>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}

Probab=93.84  E-value=0.16  Score=39.93  Aligned_cols=33  Identities=27%  Similarity=0.325  Sum_probs=27.3

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid   68 (163)
                      +.++.|+|++|.+|+.+++.+.+ .|.+++....
T Consensus         5 ~k~vlVTGas~gIG~~~a~~l~~-~G~~V~~~~r   37 (281)
T 3m1a_A            5 AKVWLVTGASSGFGRAIAEAAVA-AGDTVIGTAR   37 (281)
T ss_dssp             CCEEEETTTTSHHHHHHHHHHHH-TTCEEEEEES
T ss_pred             CcEEEEECCCChHHHHHHHHHHH-CCCEEEEEeC
Confidence            45799999999999999999884 6888876543

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=93.83  E-value=0.45  Score=37.30  Aligned_cols=32  Identities=28%  Similarity=0.416  Sum_probs=26.5

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~   69 (163)
                      .++.|+|++|.+|+.+++.+. ..+.+++. +++
T Consensus        11 k~vlVTGas~gIG~aia~~l~-~~G~~V~~-~~r   42 (262)
T 3pk0_A           11 RSVVVTGGTKGIGRGIATVFA-RAGANVAV-AGR   42 (262)
T ss_dssp             CEEEETTCSSHHHHHHHHHHH-HTTCEEEE-EES
T ss_pred             CEEEEECCCcHHHHHHHHHHH-HCCCEEEE-EeC
Confidence            579999999999999999987 46888775 454

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	163
d1diha1	162	c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate re	9e-06

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]} Length = 162

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

 Score = 41.4 bits (96), Expect = 9e-06
 Identities = 21/126 (16%), Positives = 43/126 (34%), Gaps = 4/126 (3%)

Query: 33  QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS 92
            +NI+V I GA   +GR  + A     G+++  A++            ++    +  V  
Sbjct: 2   DANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTV 61

Query: 93  DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFC 152
             ++     +      V IDFT      +++      G   V+           A+    
Sbjct: 62  QSSL----DAVKDDFDVFIDFTRPEGTLNHLAFCRQHGKGMVIGTTGFDEAGKQAIRDAA 117

Query: 153 DKASMV 158
              ++V
Sbjct: 118 ADIAIV 123

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	163
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	99.96
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	99.93
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	99.91
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	99.75
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	99.75
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	99.73
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	99.71
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	99.67
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	99.65
d1lc0a1	172	Biliverdin reductase {Rat (Rattus norvegicus) [Tax	99.65
d2nvwa1	237	Galactose/lactose metabolism regulatory protein GA	99.62
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	99.48
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	99.28
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	99.11
d1oi7a1	121	Succinyl-CoA synthetase, alpha-chain, N-terminal (	99.1
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	99.06
d2nu7a1	119	Succinyl-CoA synthetase, alpha-chain, N-terminal (	99.05
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	99.03
d1ebfa1	168	Homoserine dehydrogenase {Baker's yeast (Saccharom	99.0
d1vkna1	176	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	99.0
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	98.99
d2g17a1	179	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	98.99
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	98.86
d1euca1	130	Succinyl-CoA synthetase, alpha-chain, N-terminal (	98.85
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	98.72
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	98.7
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	98.67
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	98.65
d1mb4a1	147	Aspartate beta-semialdehyde dehydrogenase {Vibrio	98.65
d1y81a1	116	Hypothetical protein PF0725 {Pyrococcus furiosus [	98.53
d2csua1	129	Acetate-CoA ligase alpha chain, AcdA, N-terminal d	98.51
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	98.47
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	98.46
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	98.43
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	98.4
d2d59a1	139	Hypothetical protein PH1109 {Pyrococcus horikoshii	98.29
d1gado1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	98.28
d2g0ta1	338	Hypothetical protein TM0796 {Thermotoga maritima [	98.27
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	98.25
d1iuka_	136	Hypothetical protein TT1466 {Thermus thermophilus	98.21
d1u8fo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	98.18
d1obfo1	173	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	98.1
d1k3ta1	190	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	98.06
d1rm4a1	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	98.05
d2b4ro1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	98.05
d3cmco1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	97.99
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.98
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	97.94
d1hdgo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	97.89
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	97.88
d2g82a1	168	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	97.85
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	97.81
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	97.79
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	97.77
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	97.76
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	97.64
d1dssg1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	97.56
d1r0ka2	150	1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z	97.49
d1gr0a1	243	Myo-inositol 1-phosphate synthase {Mycobacterium t	97.41
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	97.4
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	97.4
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	97.4
d1vjpa1	275	Hypothetical protein TM1419 {Thermotoga maritima [	97.36
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	97.32
d1q0qa2	151	1-deoxy-D-xylulose-5-phosphate reductoisomerase {E	97.28
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	97.26
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	97.24
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	97.24
d1kewa_	361	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	97.21
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	97.21
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	97.21
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	97.2
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	97.12
d1n2sa_	298	dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S	97.08
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	97.05
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	97.02
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	96.99
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	96.98
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	96.95
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	96.94
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	96.8
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	96.79
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	96.71
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	96.55
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	96.53
d1gtma1	239	Glutamate dehydrogenase {Archaeon Pyrococcus furio	96.52
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	96.52
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	96.45
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	96.44
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	96.41
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	96.33
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	96.27
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	96.26
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	96.2
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	96.2
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	96.2
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	96.19
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	96.18
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	96.16
d1oc2a_	346	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	96.11
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	96.11
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	96.09
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	96.09
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	96.09
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	96.05
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	96.01
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	95.99
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	95.97
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	95.97
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	95.93
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	95.87
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	95.79
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	95.79
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	95.78
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	95.77
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	95.77
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	95.67
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	95.65
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	95.62
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	95.62
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	95.61
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	95.56
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	95.47
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	95.47
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	95.46
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	95.43
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	95.43
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	95.43
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	95.41
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	95.39
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	95.29
d1gy8a_	383	Uridine diphosphogalactose-4-epimerase (UDP-galact	95.25
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	95.25
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	95.22
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	95.19
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	95.16
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	95.08
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	95.08
d1r6da_	322	dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces	95.06
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	95.04
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	95.04
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	95.02
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	95.0
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	94.92
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	94.88
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	94.82
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	94.76
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	94.74
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	94.71
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	94.67
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	94.6
d1qmga2	226	Class II ketol-acid reductoisomerase (KARI) {Spina	94.52
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	94.5
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	94.47
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	94.35
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	94.28
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	94.17
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	94.14
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	94.14
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	94.14
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	94.13
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	94.12
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	94.02
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	94.01
d1eq2a_	307	ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric	93.95
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	93.94
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	93.9
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	93.86
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	93.86
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	93.85
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	93.82
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	93.81
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	93.68
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	93.67
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	93.65
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	93.57
d2bw0a2	203	10-formyltetrahydrofolate dehydrogenase domain 1 {	93.57
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	93.55
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	93.5
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	93.49
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	93.42
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	93.39
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	93.38
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	93.36
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	93.35
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	93.3
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	93.29
d1yo6a1	250	Putative carbonyl reductase sniffer {Caenorhabditi	93.27
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	93.24
d1jtva_	285	Human estrogenic 17beta-hydroxysteroid dehydrogena	93.17
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	93.06
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	93.01
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	92.97
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	92.97
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	92.92
d1yova1	529	Amyloid beta precursor protein-binding protein 1,	92.89
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	92.85
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	92.82
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	92.77
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	92.73
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	92.53
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	92.49
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	92.41
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	92.4
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	92.28
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	92.19
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	92.18
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	91.99
d1omoa_	320	Archaeal alanine dehydrogenase {Archaeon Archaeogl	91.95
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	91.93
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	91.92
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	91.89
d1np3a2	182	Class I ketol-acid reductoisomerase (KARI) {Pseudo	91.69
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	91.5
d2csua2	161	Acetate-CoA ligase alpha chain, AcdA, domains 2 an	91.42
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	91.41
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	91.4
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	91.26
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	91.15
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	91.13
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	90.93
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	90.91
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	90.89
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	90.83
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	90.63
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	90.58
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	90.25
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	90.17
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	90.13
d1x7da_	340	Ornithine cyclodeaminase {Pseudomonas putida [TaxI	90.07
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	90.01
d1gsoa2	105	Glycinamide ribonucleotide synthetase (GAR-syn), N	89.6
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	89.52
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	89.24
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	89.19
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	88.97
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	88.87
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	88.67
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	88.61
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	88.49
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	87.66
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	87.53
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	87.12
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	86.56
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	86.11
d1b74a1	105	Glutamate racemase {Aquifex pyrophilus [TaxId: 271	85.96
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	85.75
d1u1ia1	287	Myo-inositol 1-phosphate synthase {Archaeoglobus f	84.24
d2b0ja2	242	5,10-methenyltetrahydromethanopterin hydrogenase,	83.78
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	83.33
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	83.33
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	83.32
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	83.02
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	82.84
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	82.76
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	82.5
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	82.3
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	81.69
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	81.36
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	81.29
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	81.0
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	80.99
d1fmta2	206	Methionyl-tRNAfmet formyltransferase {Escherichia	80.35

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=9.7e-30  Score=194.80  Aligned_cols=123  Identities=22%  Similarity=0.307  Sum_probs=114.3

Q ss_pred             CCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC---CCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccE
Q 031216           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH---SVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV  109 (163)
Q Consensus        33 ~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~---~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DV  109 (163)
                      +++|||+|+|++|||||++++.+.+.++++|++++++.   ..|.|.+++.+.. +.++++++++++++.      ++||
T Consensus         2 ~s~ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g~d~~~~~~~~-~~~~~~~~~~~~~~~------~~DV   74 (162)
T d1diha1           2 DANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAG-KTGVTVQSSLDAVKD------DFDV   74 (162)
T ss_dssp             CCBEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSS-CCSCCEESCSTTTTT------SCSE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhccchhhhhhccc-cCCceeeccHHHHhc------ccce
Confidence            45799999999999999999999999999999999953   4688999988875 778999999998874      8999


Q ss_pred             EEEccCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeEEcCC
Q 031216          110 VIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVSTGS  162 (163)
Q Consensus       110 VIDfT~p~~~~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv~tg~  162 (163)
                      +||||+|+...++++.|.++|+|+|+|||||+++|.++|+++|++.||+++++
T Consensus        75 iIDFs~p~~~~~~~~~a~~~~~~~ViGTTG~~~~~~~~i~~~a~~ipi~~apN  127 (162)
T d1diha1          75 FIDFTRPEGTLNHLAFCRQHGKGMVIGTTGFDEAGKQAIRDAAADIAIVFAAN  127 (162)
T ss_dssp             EEECSCHHHHHHHHHHHHHTTCEEEECCCCCCHHHHHHHHHHTTTSCEEECSC
T ss_pred             EEEeccHHHHHHHHHHHHhccceeEEecCCCcHHHHHHHHHHcCCCCEEEEcc
Confidence            99999999999999999999999999999999999999999999999999986

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.93  E-value=2.9e-25  Score=165.33  Aligned_cols=100  Identities=23%  Similarity=0.342  Sum_probs=89.4

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEccCc
Q 031216           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDA  116 (163)
Q Consensus        37 rV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT~p  116 (163)
                      ||+|+|++||||+.+++.+.+.++++|++.+|+.   .                  ++.....     .++|||||||+|
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~---~------------------~~~~~~~-----~~~DvvIDFS~p   54 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAG---D------------------PLSLLTD-----GNTEVVIDFTHP   54 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTT---C------------------CTHHHHT-----TTCSEEEECCCT
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecC---C------------------chhhhcc-----ccCCEEEEcccH
Confidence            8999999999999999999999999999999852   1                  2223333     589999999999


Q ss_pred             hhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHH---hhhcCeEEcCC
Q 031216          117 STVYDNVKQATAFGMRSVVYVPHIQLETVSALSAF---CDKASMVSTGS  162 (163)
Q Consensus       117 ~~~~~~~~~al~~G~~vVigttg~~~e~~~~L~~~---A~~~~Vv~tg~  162 (163)
                      +.+.++++.|+++|+|+|+|||||+++|.++|+++   +++.||+++++
T Consensus        55 ~~~~~~~~~~~~~~~~~ViGTTG~~~~~~~~l~~~~~~~~~ipil~apN  103 (135)
T d1yl7a1          55 DVVMGNLEFLIDNGIHAVVGTTGFTAERFQQVESWLVAKPNTSVLIAPN  103 (135)
T ss_dssp             TTHHHHHHHHHHTTCEEEECCCCCCHHHHHHHHHHHHSCTTCEEEECSC
T ss_pred             HHHHHHHHHHHhcCCCEEEeccccchhHHHHHHHHHHhcCCCCEEEcCC
Confidence            99999999999999999999999999999999985   78899999987

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.91  E-value=1.8e-24  Score=159.50  Aligned_cols=97  Identities=21%  Similarity=0.278  Sum_probs=86.4

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEccC
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT~  115 (163)
                      |||+|+|++||||+.+.+.+. .++.++++.+|....                       +.+      .++|||||||+
T Consensus         1 mki~i~G~~GrMG~~i~~~~~-~~~~~l~~~id~~~~-----------------------~~~------~~~DVvIDFS~   50 (128)
T d1vm6a3           1 MKYGIVGYSGRMGQEIQKVFS-EKGHELVLKVDVNGV-----------------------EEL------DSPDVVIDFSS   50 (128)
T ss_dssp             CEEEEETTTSHHHHHHHHHHH-HTTCEEEEEEETTEE-----------------------EEC------SCCSEEEECSC
T ss_pred             CEEEEECCCCHHHHHHHHHHh-cCCCeEEEEECCCcH-----------------------HHh------ccCCEEEEecC
Confidence            689999999999999988775 689999999885310                       012      38999999999


Q ss_pred             chhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeEEcCC
Q 031216          116 ASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVSTGS  162 (163)
Q Consensus       116 p~~~~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv~tg~  162 (163)
                      |+.+.++++.|+++|+|+|+|||||++++.+.|+++|++.|++++++
T Consensus        51 p~~~~~~l~~~~~~~~p~ViGTTG~~~~~~~~i~~~ak~~pv~~a~N   97 (128)
T d1vm6a3          51 PEALPKTVDLCKKYRAGLVLGTTALKEEHLQMLRELSKEVPVVQAYS   97 (128)
T ss_dssp             GGGHHHHHHHHHHHTCEEEECCCSCCHHHHHHHHHHTTTSEEEECSC
T ss_pred             HHHHHHHHHHHHhcCCCEEEEcCCCCHHHHHHHHHHHhhCCEEeeec
Confidence            99999999999999999999999999999999999999999999876

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.75  E-value=3.3e-18  Score=130.26  Aligned_cols=118  Identities=12%  Similarity=0.163  Sum_probs=98.7

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC-CcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEc
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-GEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~-g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDf  113 (163)
                      ++||||+| +|+||+.+++.+...++++|+|++|+... .+...+..+.  +....+|+|++++++.    .++|+|+.+
T Consensus         1 kiki~iIG-~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~~~~~~--~~~~~~~~~~~~ll~~----~~iD~v~I~   73 (184)
T d1ydwa1           1 QIRIGVMG-CADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNY--PESTKIHGSYESLLED----PEIDALYVP   73 (184)
T ss_dssp             CEEEEEES-CCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTC--CTTCEEESSHHHHHHC----TTCCEEEEC
T ss_pred             CeEEEEEc-CCHHHHHHHHHHHhCCCCEEEEEEeCCccccccchhcccc--ccceeecCcHHHhhhc----cccceeeec
Confidence            48999999 69999999999999999999999996421 1222222222  2345689999999974    799999999


Q ss_pred             cCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCeEE
Q 031216          114 TDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMVS  159 (163)
Q Consensus       114 T~p~~~~~~~~~al~~G~~vVigtt-g~~~e~~~~L~~~A~~~~Vv~  159 (163)
                      |+|..+.+++..|+++|+||++++| +.+.++.++|.+++++.++.+
T Consensus        74 tp~~~h~~~~~~~l~~g~~v~~EKP~~~~~~e~~~l~~~~~~~~~~~  120 (184)
T d1ydwa1          74 LPTSLHVEWAIKAAEKGKHILLEKPVAMNVTEFDKIVDACEANGVQI  120 (184)
T ss_dssp             CCGGGHHHHHHHHHTTTCEEEECSSCSSSHHHHHHHHHHHHTTTCCE
T ss_pred             ccchhhcchhhhhhhccceeecccccccCHHHHHHHHHHHHhhCCEE
Confidence            9999999999999999999999999 689999999999999987754

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=99.75  E-value=6.1e-18  Score=126.76  Aligned_cols=113  Identities=15%  Similarity=0.254  Sum_probs=96.6

Q ss_pred             CeeEEEEcCCCHHHHH-HHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEc
Q 031216           35 NIKVIINGAVKEIGRA-AVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~-i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDf  113 (163)
                      ++||||+| +|.||+. ++..+...++++|++++|+...  ...++..   .++++.+++++++++      ++|+|+.+
T Consensus         1 Kiri~iIG-~G~~g~~~~~~~l~~~~~~~i~~v~d~~~~--~~~~~~~---~~~~~~~~~~~~l~~------~~D~V~I~   68 (164)
T d1tlta1           1 KLRIGVVG-LGGIAQKAWLPVLAAASDWTLQGAWSPTRA--KALPICE---SWRIPYADSLSSLAA------SCDAVFVH   68 (164)
T ss_dssp             CEEEEEEC-CSTHHHHTHHHHHHSCSSEEEEEEECSSCT--THHHHHH---HHTCCBCSSHHHHHT------TCSEEEEC
T ss_pred             CCEEEEEc-CCHHHHHHHHHHHHhCCCcEEEEEEechhH--hhhhhhh---cccccccccchhhhh------hccccccc
Confidence            58999999 6999975 7888999999999999996532  2233331   457788999999874      89999989


Q ss_pred             cCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCeEE
Q 031216          114 TDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMVS  159 (163)
Q Consensus       114 T~p~~~~~~~~~al~~G~~vVigtt-g~~~e~~~~L~~~A~~~~Vv~  159 (163)
                      |+|..+.+++..++++|+||++++| +.+.++..+|.++|++.++.+
T Consensus        69 tp~~~h~~~~~~al~~gk~V~~EKPla~~~~e~~~l~~~a~~~~~~~  115 (164)
T d1tlta1          69 SSTASHFDVVSTLLNAGVHVCVDKPLAENLRDAERLVELAARKKLTL  115 (164)
T ss_dssp             SCTTHHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHTTCCE
T ss_pred             ccchhccccccccccccceeeccccccCCHHHHHHHHHHHHHcCCcE
Confidence            9999999999999999999999999 789999999999999988754

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=99.73  E-value=6.1e-18  Score=133.29  Aligned_cols=134  Identities=9%  Similarity=0.060  Sum_probs=104.4

Q ss_pred             ccceeeeccCC-CCCCCeeEEEEcCCCHHHH-HHHHHHHhcCCcEEEEEEecCC-CCcchhhhccCCCCCCcceeCCHHH
Q 031216           20 KAKRFISCSTN-PPQSNIKVIINGAVKEIGR-AAVIAVTKARGMEVAGAIDSHS-VGEDIGMVCDMEQPLEIPVMSDLTM   96 (163)
Q Consensus        20 ~~~~~~~~~~~-~~~~~irV~VvGa~G~mG~-~i~~~i~~~~~~eLvgvid~~~-~g~~~~~l~g~~~~~gi~v~~~l~e   96 (163)
                      ..+++..-..- |+.+++||||+| +|.||+ .++..+...++++|++++|+.. ..+...+..+++ ...+..|+|+++
T Consensus        17 ~~~~~~~~~~~~~~~~~iriaiIG-~G~~~~~~~~~~~~~~~~~~ivav~d~~~~~a~~~~~~~~i~-~~~~~~~~d~~e   94 (221)
T d1h6da1          17 AGRPMPYAIRPMPEDRRFGYAIVG-LGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVD-PRKIYDYSNFDK   94 (221)
T ss_dssp             CCCCCCCCSSCCCCCCCEEEEEEC-CSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCC-GGGEECSSSGGG
T ss_pred             CCCcCccccCCCCCCCCEEEEEEc-CcHHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhhccc-cccccccCchhh
Confidence            33444333322 445689999999 699997 4778888899999999999643 112233333332 334556899999


Q ss_pred             HHhcccccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCeEE
Q 031216           97 VLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMVS  159 (163)
Q Consensus        97 ll~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigtt-g~~~e~~~~L~~~A~~~~Vv~  159 (163)
                      +++.    .++|+|+.+|.+..+.+++..++++|+||++++| +.+.++..+|.+++++.++.+
T Consensus        95 ll~~----~~iD~V~I~tp~~~H~~~~~~al~~gk~v~~EKPla~~~~e~~~l~~~a~~~~~~~  154 (221)
T d1h6da1          95 IAKD----PKIDAVYIILPNSLHAEFAIRAFKAGKHVMCEKPMATSVADCQRMIDAAKAANKKL  154 (221)
T ss_dssp             GGGC----TTCCEEEECSCGGGHHHHHHHHHHTTCEEEECSSCCSSHHHHHHHHHHHHHHTCCE
T ss_pred             hccc----ccceeeeeccchhhhhhHHHHhhhcchhhhcCCCccCCHHHHHHHHHHHHhcCCcE
Confidence            9974    7899999899999999999999999999999999 789999999999999988754

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=99.71  E-value=6.9e-17  Score=122.97  Aligned_cols=116  Identities=14%  Similarity=0.110  Sum_probs=94.9

Q ss_pred             CCeeEEEEcCCCHHHHH-HHHHHHhcCC-cEEEEEEecCCCCcchhhhccCCCCCCc-ceeCCHHHHHhcccccCCccEE
Q 031216           34 SNIKVIINGAVKEIGRA-AVIAVTKARG-MEVAGAIDSHSVGEDIGMVCDMEQPLEI-PVMSDLTMVLGSISQSKARAVV  110 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~-i~~~i~~~~~-~eLvgvid~~~~g~~~~~l~g~~~~~gi-~v~~~l~ell~~~~~~~~~DVV  110 (163)
                      +++||||+| +|++|+. ++..+.+.++ ++|+|++|+..  ..+..+..   ..+. .+|+|++++++.    +++|+|
T Consensus         2 kkirigiIG-~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~--~~~~~~~~---~~~~~~~~~~~~ell~~----~~id~v   71 (181)
T d1zh8a1           2 RKIRLGIVG-CGIAARELHLPALKNLSHLFEITAVTSRTR--SHAEEFAK---MVGNPAVFDSYEELLES----GLVDAV   71 (181)
T ss_dssp             CCEEEEEEC-CSHHHHHTHHHHHHTTTTTEEEEEEECSSH--HHHHHHHH---HHSSCEEESCHHHHHHS----SCCSEE
T ss_pred             CCcEEEEEc-CCHHHHHHHHHHHHhCCCCeEEEEEEeccH--hhhhhhhc---cccccceeeeeeccccc----ccccee
Confidence            368999999 6999986 7888887665 69999999653  12222221   2333 478999999984    789999


Q ss_pred             EEccCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCeEE
Q 031216          111 IDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMVS  159 (163)
Q Consensus       111 IDfT~p~~~~~~~~~al~~G~~vVigtt-g~~~e~~~~L~~~A~~~~Vv~  159 (163)
                      +.+|+|+.+.+++..++++|+||++++| +.+.++..+|.+++++.++..
T Consensus        72 ~I~tp~~~h~~~~~~al~~gk~V~~EKPl~~~~~e~~~l~~~~~~~~~~~  121 (181)
T d1zh8a1          72 DLTLPVELNLPFIEKALRKGVHVICEKPISTDVETGKKVVELSEKSEKTV  121 (181)
T ss_dssp             EECCCGGGHHHHHHHHHHTTCEEEEESSSSSSHHHHHHHHHHHHHCSSCE
T ss_pred             eccccccccccccccccccchhhhcCCCCcCCHHHHHHHHHHHHHhCCeE
Confidence            9899999999999999999999999999 789999999999999987643

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=99.67  E-value=1.5e-16  Score=120.29  Aligned_cols=108  Identities=16%  Similarity=0.094  Sum_probs=87.5

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT  114 (163)
                      ++||+|+| +|+||+.+++.+.+.+++||++++|++..-   .      ...+...+.+++++++      ++|+|+.+|
T Consensus         3 kirvgiiG-~G~ig~~~~~~l~~~~~~elvav~~~~~~~---~------~~~~~~~~~~~~~~~~------~~D~Vvi~t   66 (170)
T d1f06a1           3 NIRVAIVG-YGNLGRSVEKLIAKQPDMDLVGIFSRRATL---D------TKTPVFDVADVDKHAD------DVDVLFLCM   66 (170)
T ss_dssp             CEEEEEEC-CSHHHHHHHHHHTTCSSEEEEEEEESSSCC---S------SSSCEEEGGGGGGTTT------TCSEEEECS
T ss_pred             cceEEEEC-ChHHHHHHHHHHHhCCCcEEEEEEeccccc---c------cccccccchhhhhhcc------ccceEEEeC
Confidence            58999999 699999999999999999999999965311   0      1334555667766653      899999999


Q ss_pred             CchhHHHHHHHHHHcCCcEEEeCC--CCCHHHHHHHHHHhhhcCeE
Q 031216          115 DASTVYDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMV  158 (163)
Q Consensus       115 ~p~~~~~~~~~al~~G~~vVigtt--g~~~e~~~~L~~~A~~~~Vv  158 (163)
                      ++..+.+++..++++|+|+|...+  ..+.++.++|.++|++.+.+
T Consensus        67 p~~~h~~~a~~aL~aG~~vv~~~~~~~~~~~~~~~l~~~A~~~~~~  112 (170)
T d1f06a1          67 GSATDIPEQAPKFAQFACTVDTYDNHRDIPRHRQVMNEAATAAGNV  112 (170)
T ss_dssp             CTTTHHHHHHHHHTTTSEEECCCCCGGGHHHHHHHHHHHHHHHTCE
T ss_pred             CCcccHHHHHHHHHCCCcEEEecCccccCHHHHHHHHHHHHhcCce
Confidence            999999999999999999885444  34568889999999997753

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=99.65  E-value=5.4e-16  Score=116.23  Aligned_cols=112  Identities=13%  Similarity=0.167  Sum_probs=91.9

Q ss_pred             eeEEEEcCCCHHHHH-HHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCc-ceeCCHHHHHhcccccCCccEEEEc
Q 031216           36 IKVIINGAVKEIGRA-AVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI-PVMSDLTMVLGSISQSKARAVVIDF  113 (163)
Q Consensus        36 irV~VvGa~G~mG~~-i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi-~v~~~l~ell~~~~~~~~~DVVIDf  113 (163)
                      |||||+| +|+||+. +++.+...++++++ ++|++.  .....+..   .+++ .+|+|++++++     .++|+|+.+
T Consensus         2 irvgiiG-~G~~~~~~~~~~l~~~~~~~~~-~~d~~~--~~~~~~~~---~~~~~~~~~~~~~ll~-----~~iD~V~I~   69 (167)
T d1xeaa1           2 LKIAMIG-LGDIAQKAYLPVLAQWPDIELV-LCTRNP--KVLGTLAT---RYRVSATCTDYRDVLQ-----YGVDAVMIH   69 (167)
T ss_dssp             EEEEEEC-CCHHHHHTHHHHHTTSTTEEEE-EECSCH--HHHHHHHH---HTTCCCCCSSTTGGGG-----GCCSEEEEC
T ss_pred             eEEEEEc-CCHHHHHHHHHHHHhCCCcEEE-EEECCH--HHHHHHHH---hcccccccccHHHhcc-----cccceeccc
Confidence            8999999 6999965 88899999999997 677542  12222221   2343 46899999986     489999989


Q ss_pred             cCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCeEE
Q 031216          114 TDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMVS  159 (163)
Q Consensus       114 T~p~~~~~~~~~al~~G~~vVigtt-g~~~e~~~~L~~~A~~~~Vv~  159 (163)
                      |+|..+.+++..++++|+||++++| +.+.++..+|.+++++.++.+
T Consensus        70 tp~~~H~~~~~~al~~gk~V~~EKP~~~~~~e~~~l~~~a~~~~~~~  116 (167)
T d1xeaa1          70 AATDVHSTLAAFFLHLGIPTFVDKPLAASAQECENLYELAEKHHQPL  116 (167)
T ss_dssp             SCGGGHHHHHHHHHHTTCCEEEESCSCSSHHHHHHHHHHHHHTTCCE
T ss_pred             ccccccccccccccccccccccCCCCcCCHHHHHHHHHHHHHcCCEE
Confidence            9999999999999999999999999 789999999999999988754

>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Biliverdin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.65  E-value=4.5e-16  Score=117.36  Aligned_cols=115  Identities=18%  Similarity=0.204  Sum_probs=92.8

Q ss_pred             CCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEE
Q 031216           32 PQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI  111 (163)
Q Consensus        32 ~~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVI  111 (163)
                      .++++||+|+| +|+||+.+++.+.+.++.+++++++.... +....      ..+. .+.|+++++..    +++|+|+
T Consensus         4 ~~~k~kv~iIG-~G~~g~~h~~~l~~~~~~~~~~~~~~~~~-~~~~~------~~~~-~~~~~~e~l~~----~~iD~V~   70 (172)
T d1lc0a1           4 NSGKFGVVVVG-VGRAGSVRLRDLKDPRSAAFLNLIGFVSR-RELGS------LDEV-RQISLEDALRS----QEIDVAY   70 (172)
T ss_dssp             CCCSEEEEEEC-CSHHHHHHHHHHTSHHHHTTEEEEEEECS-SCCCE------ETTE-EBCCHHHHHHC----SSEEEEE
T ss_pred             CCCCcEEEEEc-CCHHHHHHHHHHHhCCCCcEEEEEeccch-HHHHH------hhcc-CcCCHHHHHhC----CCcchhh
Confidence            46789999999 69999999999988887777777763211 11111      1122 24589999974    8999999


Q ss_pred             EccCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCeEE
Q 031216          112 DFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMVS  159 (163)
Q Consensus       112 DfT~p~~~~~~~~~al~~G~~vVigtt-g~~~e~~~~L~~~A~~~~Vv~  159 (163)
                      .+|+|+.+.+++..++++|+||++++| +.+.++.++|.++|++.++.+
T Consensus        71 I~tp~~~H~~~~~~al~~gk~V~~EKP~a~~~~e~~~l~~~a~~~~~~~  119 (172)
T d1lc0a1          71 ICSESSSHEDYIRQFLQAGKHVLVEYPMTLSFAAAQELWELAAQKGRVL  119 (172)
T ss_dssp             ECSCGGGHHHHHHHHHHTTCEEEEESCSCSCHHHHHHHHHHHHHTTCCE
T ss_pred             hcccccccccccccccccchhhhcCCCccccHHHHHHHHHHHHHcCCeE
Confidence            899999999999999999999999999 789999999999999988754

>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Galactose/lactose metabolism regulatory protein GAL80
species: Yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=99.62  E-value=1.5e-15  Score=120.22  Aligned_cols=124  Identities=11%  Similarity=0.095  Sum_probs=98.7

Q ss_pred             eccCCCCCCCeeEEEEcCCC----HHHHHHHHHHHh-cCCcEEEEEEecCCC-CcchhhhccCCCCCCcceeCCHHHHHh
Q 031216           26 SCSTNPPQSNIKVIINGAVK----EIGRAAVIAVTK-ARGMEVAGAIDSHSV-GEDIGMVCDMEQPLEIPVMSDLTMVLG   99 (163)
Q Consensus        26 ~~~~~~~~~~irV~VvGa~G----~mG~~i~~~i~~-~~~~eLvgvid~~~~-g~~~~~l~g~~~~~gi~v~~~l~ell~   99 (163)
                      +-|+-|++++|||||+|+ |    ++++.|+..+.+ .++++|+|++|++.. .+...+-.+   ......|+|+++++.
T Consensus         7 ~~~~~~~~k~irvgiIG~-G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~   82 (237)
T d2nvwa1           7 KLSTVPSSRPIRVGFVGL-TSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQ---LKHATGFDSLESFAQ   82 (237)
T ss_dssp             GGGSSGGGCCEEEEEECC-CSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTT---CTTCEEESCHHHHHH
T ss_pred             ccccCCCCCCeEEEEEec-CccccHHHHHHHHHHHhcCCCeEEEEEEcCCHHHHHHHHHhcc---cccceeecchhhccc
Confidence            457888999999999995 5    478888888866 588999999996431 111222222   124567899999997


Q ss_pred             cccccCCccEEEEccCchhHHHHHHHHHHcC------CcEEEeCC-CCCHHHHHHHHHHhhhc-Ce
Q 031216          100 SISQSKARAVVIDFTDASTVYDNVKQATAFG------MRSVVYVP-HIQLETVSALSAFCDKA-SM  157 (163)
Q Consensus       100 ~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G------~~vVigtt-g~~~e~~~~L~~~A~~~-~V  157 (163)
                      .    +++|+|+.+|++..+.+++..++++|      +||++++| +.+.++..+|.++|++. ++
T Consensus        83 ~----~~iD~V~i~tp~~~h~~~~~~al~aG~~~~~~k~V~~EKPla~~~~e~~~l~~~a~~~~~~  144 (237)
T d2nvwa1          83 Y----KDIDMIVVSVKVPEHYEVVKNILEHSSQNLNLRYLYVEWALAASVQQAEELYSISQQRANL  144 (237)
T ss_dssp             C----TTCSEEEECSCHHHHHHHHHHHHHHSSSCSSCCEEEEESSSSSSHHHHHHHHHHHHTCTTC
T ss_pred             c----cccceeeccCCCcchhhHHHHHHHhcccccCCceEEEeccccCCHHHHHHHHHHHhhcCCe
Confidence            4    89999999999999999999999988      59999999 88999999999999765 44

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.28  E-value=8.4e-12  Score=95.48  Aligned_cols=94  Identities=17%  Similarity=0.215  Sum_probs=71.8

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcc-------------hhhhccCCCCCCcceeCCHHHHHhcc
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGED-------------IGMVCDMEQPLEIPVMSDLTMVLGSI  101 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~-------------~~~l~g~~~~~gi~v~~~l~ell~~~  101 (163)
                      |+||||.| .||+||.++|.+.++|+++||++.|.......             ....... ...++++..++++++.  
T Consensus         1 MIKVaING-fGRIGR~v~Ral~~~~dievVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~v~g~~~~~~~--   76 (178)
T d1b7go1           1 MVNVAVNG-YGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKF-EESGIPVAGTVEDLIK--   76 (178)
T ss_dssp             CEEEEEEC-CSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHH-HTTTCCCCCCHHHHHH--
T ss_pred             CeEEEEEC-CCHHHHHHHHHHHhCCCCEEEEEECCCCcHHHHHhcccCcceeccCccceec-cccceecCCchhhhhh--
Confidence            89999999 79999999999999999999999985321000             0000001 1345666677777775  


Q ss_pred             cccCCccEEEEccCchhHHHHHHHHHHcCCcEEEe
Q 031216          102 SQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVY  136 (163)
Q Consensus       102 ~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVig  136 (163)
                          ++|+|||+|..-...+.+...+++|+++|+-
T Consensus        77 ----~vDiViecTG~f~~~e~a~~hl~~G~KvIi~  107 (178)
T d1b7go1          77 ----TSDIVVDTTPNGVGAQYKPIYLQLQRNAIFQ  107 (178)
T ss_dssp             ----HCSEEEECCSTTHHHHHHHHHHHTTCEEEEC
T ss_pred             ----cCCEEEECCCCcCCHHHHHHHHHcCCEEEEE
Confidence                7999999998777789999999999999983

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.11  E-value=1e-10  Score=88.82  Aligned_cols=94  Identities=21%  Similarity=0.255  Sum_probs=68.9

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhcc--CC------------CCCCcceeCCHHHHHh
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCD--ME------------QPLEIPVMSDLTMVLG   99 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g--~~------------~~~gi~v~~~l~ell~   99 (163)
                      +++||||.| .||+||.++|.+.+++++++|++-|.... .....+..  .+            ...+.++..++.+++.
T Consensus         1 M~irIaING-fGRIGR~v~Ral~~~~dieiVaINd~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (172)
T d2czca2           1 MKVKVGVNG-YGTIGKRVAYAVTKQDDMELIGITKTKPD-FEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLE   78 (172)
T ss_dssp             CCEEEEEEC-CSHHHHHHHHHHHTCTTEEEEEEEESSCS-HHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHT
T ss_pred             CcEEEEEEC-CCHHHHHHHHHHHhCCCceEEEEecCCCh-HHHHHhhhcCceeecccccceeeecccCccccchhhhhhc
Confidence            468999999 69999999999999999999999994321 11111110  00            0122344456666653


Q ss_pred             cccccCCccEEEEccCchhHHHHHHHHHHcCCcEEE
Q 031216          100 SISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVV  135 (163)
Q Consensus       100 ~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVi  135 (163)
                            ++|+|||+|-.-...+.+...+++|++.|+
T Consensus        79 ------~vDvViEcTG~f~~~~~~~~hl~~G~k~Vi  108 (172)
T d2czca2          79 ------KVDIIVDATPGGIGAKNKPLYEKAGVKAIF  108 (172)
T ss_dssp             ------TCSEEEECCSTTHHHHHHHHHHHHTCEEEE
T ss_pred             ------cCCEEEECCCCCCCHHHHHHHHHcCCCEEE
Confidence                  899999999888888999999999998887

>d1oi7a1 c.2.1.8 (A:1-121) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.10  E-value=2.1e-09  Score=77.21  Aligned_cols=114  Identities=15%  Similarity=0.199  Sum_probs=96.5

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEc
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDf  113 (163)
                      +.-||.|-|.+|+.|+.|.+...+. +-++|+.+.+...|+.         -.++|+|++.+|+.++    .++|+=+.|
T Consensus         6 k~trVivQGiTG~~G~~ht~~m~~y-GT~iVaGVtPgkgG~~---------~~giPVf~tV~eAv~~----~~~d~SvIf   71 (121)
T d1oi7a1           6 RETRVLVQGITGREGQFHTKQMLTY-GTKIVAGVTPGKGGME---------VLGVPVYDTVKEAVAH----HEVDASIIF   71 (121)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHH-TCEEEEEECTTCTTCE---------ETTEEEESSHHHHHHH----SCCSEEEEC
T ss_pred             CCCcEEEEcCCCcHHHHHHHHHHHh-CCceEeeeecCCCCcE---------EECCchHhhHHHHHHh----cCCeEEEEe
Confidence            3468999999999999999998876 8999999987654432         3479999999999985    799997779


Q ss_pred             cCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCeEEcC
Q 031216          114 TDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMVSTG  161 (163)
Q Consensus       114 T~p~~~~~~~~~al~~G~~vVigtt-g~~~e~~~~L~~~A~~~~Vv~tg  161 (163)
                      -+|..+.+-+..|+++|+++|+--| |...-+.-++.+.+++.+...-|
T Consensus        72 VPp~~a~dAi~EAi~agI~liv~ITEgVPv~Dm~~i~~~~~~~~~~liG  120 (121)
T d1oi7a1          72 VPAPAAADAALEAAHAGIPLIVLITEGIPTLDMVRAVEEIKALGSRLIG  120 (121)
T ss_dssp             CCHHHHHHHHHHHHHTTCSEEEECCSCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred             eCHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCEEeC
Confidence            9999999999999999999987777 78888888889999888776544

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=99.06  E-value=5.3e-10  Score=84.72  Aligned_cols=94  Identities=21%  Similarity=0.277  Sum_probs=68.6

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhc--c------CC------CCCCcceeCCHHHHHhc
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC--D------ME------QPLEIPVMSDLTMVLGS  100 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~--g------~~------~~~gi~v~~~l~ell~~  100 (163)
                      |+||||.| .||+||.++|.+..+++++++++-|.... .....+.  +      .+      ...++.+..++.+++. 
T Consensus         1 M~~VgING-fGRIGR~v~R~l~~~~di~vvaInd~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~-   77 (171)
T d1cf2o1           1 MKAVAING-YGTVGKRVADAIAQQDDMKVIGVSKTRPD-FEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLD-   77 (171)
T ss_dssp             CEEEEEEC-CSHHHHHHHHHHHTSSSEEEEEEEESSCS-HHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHH-
T ss_pred             CeEEEEEc-CcHHHHHHHHHHHhCCCceEEEEecCCcH-HHHHHHHhcCCceEecccccceeecccCcccCCChhHhhc-
Confidence            78999999 79999999999999999999999985321 0000000  0      00      0123344456666654 


Q ss_pred             ccccCCccEEEEccCchhHHHHHHHHHHcCCcEEEe
Q 031216          101 ISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVY  136 (163)
Q Consensus       101 ~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVig  136 (163)
                           ++|+|||+|-.-...+.+...+++|+++|+-
T Consensus        78 -----~vDvViEcTG~f~~~~~~~~hl~~G~K~vi~  108 (171)
T d1cf2o1          78 -----EADIVIDCTPEGIGAKNLKMYKEKGIKAIFQ  108 (171)
T ss_dssp             -----TCSEEEECCSTTHHHHHHHHHHHTTCEEEEC
T ss_pred             -----CCCEEEEccCCCCCHHHHHHHHHcCCCEEEE
Confidence                 8999999998777788899999999998873

>d2nu7a1 c.2.1.8 (A:2-120) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain
species: Escherichia coli [TaxId: 562]

Probab=99.05  E-value=4.2e-09  Score=75.40  Aligned_cols=114  Identities=18%  Similarity=0.263  Sum_probs=96.2

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEc
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDf  113 (163)
                      +.-||.|-|.+|+-|+.|.+...+. +-++|+.+.+...|+.         -.++|+|++.+|+.++    ..+|+=+.|
T Consensus         5 k~trVlvQGiTG~~G~~ht~~m~~y-GT~vVaGVtPgkgG~~---------~~giPVf~sV~eAv~~----~~~~~SvIf   70 (119)
T d2nu7a1           5 KNTKVICQGFTGSQGTFHSEQAIAY-GTKMVGGVTPGKGGTT---------HLGLPVFNTVREAVAA----TGATASVIY   70 (119)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHH-TCEEEEEECTTCTTEE---------ETTEEEESSHHHHHHH----HCCCEEEEC
T ss_pred             CCCcEEEEcCCCcHHHHHHHHHHHh-CCceEEEEccCCCCcc---------cCCCchhhHHHHHHHH----hCCCeEEEe
Confidence            3468999999999999999998754 8999999987655532         3579999999999985    789987779


Q ss_pred             cCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCeEEcC
Q 031216          114 TDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMVSTG  161 (163)
Q Consensus       114 T~p~~~~~~~~~al~~G~~vVigtt-g~~~e~~~~L~~~A~~~~Vv~tg  161 (163)
                      -+|..+.+-+..|+++|+++|+--| +...-+.-++.+.+++.++..-|
T Consensus        71 VPp~~a~dA~~EAi~agI~~iV~ITEgIP~~D~~~i~~~~~~~~~~liG  119 (119)
T d2nu7a1          71 VPAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLDEAGVRMIG  119 (119)
T ss_dssp             CCGGGHHHHHHHHHHTTCSEEEECCCCCCHHHHHHHHHHHHHHTCEEEC
T ss_pred             ccHHHHHHHHHHHHHCCCCEEEEecCCCCHHHHHHHHHHHhhCCCEEeC
Confidence            9999999999999999999987666 78888888999999998876543

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=99.03  E-value=7.5e-10  Score=82.68  Aligned_cols=100  Identities=17%  Similarity=0.259  Sum_probs=70.0

Q ss_pred             CCeeEEEEcCCCHHHHH-HHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCccee-CCHHHHHhcccccCCccEEE
Q 031216           34 SNIKVIINGAVKEIGRA-AVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM-SDLTMVLGSISQSKARAVVI  111 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~-i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~-~~l~ell~~~~~~~~~DVVI  111 (163)
                      +++||||+| +|++|+. +.+.+..+|.+||+++++++..+... .+.   ...+++++ +++|++++. ....++|+|+
T Consensus         3 kkirvaIIG-aG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~-~~a---~~~~i~~~~~~~d~l~~~-~~~~~iDiVf   76 (157)
T d1nvmb1           3 QKLKVAIIG-SGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGL-ARA---QRMGVTTTYAGVEGLIKL-PEFADIDFVF   76 (157)
T ss_dssp             SCEEEEEEC-CSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHH-HHH---HHTTCCEESSHHHHHHHS-GGGGGEEEEE
T ss_pred             CCcEEEEEc-CcHHHHHHHHHHHhhCCcceEEEEEecchhccch-hhh---hhcCCcccccceeeeeec-ccccccCEEE
Confidence            569999999 7999985 67888889999999999976543211 111   14566665 446666541 0013689999


Q ss_pred             EccCchhHHH--HHHHHHHcCCcEEEeCCC
Q 031216          112 DFTDASTVYD--NVKQATAFGMRSVVYVPH  139 (163)
Q Consensus       112 DfT~p~~~~~--~~~~al~~G~~vVigttg  139 (163)
                      ++|++..+.+  .+..++++|++||--++.
T Consensus        77 ~ATpag~h~~~~~~~~aa~~G~~VID~s~a  106 (157)
T d1nvmb1          77 DATSASAHVQNEALLRQAKPGIRLIDLTPA  106 (157)
T ss_dssp             ECSCHHHHHHHHHHHHHHCTTCEEEECSTT
T ss_pred             EcCCchhHHHhHHHHHHHHcCCEEEEcccc
Confidence            8887766755  456778999999987763

>d1ebfa1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Homoserine dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.00  E-value=1.1e-09  Score=82.28  Aligned_cols=131  Identities=12%  Similarity=0.097  Sum_probs=83.0

Q ss_pred             CCCCeeEEEEcCCCHHHHHHHHHHHhcCC---cEEEEEEecCC-----CCcchhhhccCCC--CCCcceeCCHHHHHhcc
Q 031216           32 PQSNIKVIINGAVKEIGRAAVIAVTKARG---MEVAGAIDSHS-----VGEDIGMVCDMEQ--PLEIPVMSDLTMVLGSI  101 (163)
Q Consensus        32 ~~~~irV~VvGa~G~mG~~i~~~i~~~~~---~eLvgvid~~~-----~g~~~~~l~g~~~--~~gi~v~~~l~ell~~~  101 (163)
                      +.++++|+++| +|.+|+.+++.+.+++.   ++++++.+++.     .|.+.........  .....-..+++.+...+
T Consensus         1 s~k~i~I~l~G-~G~VG~~l~~~l~~~~~~l~~~v~~i~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (168)
T d1ebfa1           1 STKVVNVAVIG-AGVVGSAFLDQLLAMKSTITYNLVLLAEAERSLISKDFSPLNVGSDWKAALAASTTKTLPLDDLIAHL   79 (168)
T ss_dssp             CCSEEEEEEEC-CSHHHHHHHHHHHHCCCSSEEEEEEEECSSBEEECSSCSCCSCTTCHHHHHHTCCCBCCCHHHHHHHH
T ss_pred             CCCEEEEEEEe-CCHHHHHHHHHHHHhHHHhhhheEEEEEeeeeeecccccchHhhhhhhhhhhhcccccccHHHHHHHh
Confidence            35789999999 79999999999987553   57888888531     1221111000000  00111122333333222


Q ss_pred             cccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeCCC---CCHHHHHHHHHHhhhcCeEE-cCCC
Q 031216          102 SQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPH---IQLETVSALSAFCDKASMVS-TGSV  163 (163)
Q Consensus       102 ~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigttg---~~~e~~~~L~~~A~~~~Vv~-tg~~  163 (163)
                      ......|+++|+|.-+...++...++++|+|||...-+   .+.++.++|.+++++.+.++ -++|
T Consensus        80 ~~~~~~~vivd~t~~~~~~~~~~~aL~~G~hVVTANK~~la~~~~~~~~L~~~a~~~~~~~yEatV  145 (168)
T d1ebfa1          80 KTSPKPVILVDNTSSAYIAGFYTKFVENGISIATPNKKAFSSDLATWKALFSNKPTNGFVYHEATV  145 (168)
T ss_dssp             TTCSSCEEEEECSCCHHHHTTHHHHHHTTCEEECCCCGGGSSCHHHHHHHTCCCTTCCCEECGGGT
T ss_pred             ccCCCceEEEEecCChHHHHHHHHHHHcCCeEEecCcccccCCHHHHHHHHHHHHHCCcEEEeCee
Confidence            22467889999998777778888999999999987663   34567788888888877654 4443

>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Thermotoga maritima [TaxId: 2336]

Probab=99.00  E-value=8.1e-10  Score=84.08  Aligned_cols=92  Identities=16%  Similarity=0.094  Sum_probs=66.4

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT  114 (163)
                      |+||+|+||+|..|+++++.+.+||.++|+.+..++..|+.+.++.......-.....+.+++..      +.|+++ ++
T Consensus         1 MikVaIvGATGyvG~eLirlL~~HP~~ei~~l~s~~~aG~~i~~~~p~~~~~~~~~~~~~~~~~~------~~dvvf-~a   73 (176)
T d1vkna1           1 MIRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPEKVSK------NCDVLF-TA   73 (176)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGCCCCBCBCCCHHHHHH------HCSEEE-EC
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhCCCceEEEeeccccCCCcccccCchhhccccccccCHhHhcc------ccceEE-Ec
Confidence            89999999999999999999999999999999988888988876643210111112356666653      799988 66


Q ss_pred             CchhH-HHHHHHHHHcCCcEEE
Q 031216          115 DASTV-YDNVKQATAFGMRSVV  135 (163)
Q Consensus       115 ~p~~~-~~~~~~al~~G~~vVi  135 (163)
                      .|+.. .+.+..  ..++.||=
T Consensus        74 ~p~~~s~~~~~~--~~~~~VID   93 (176)
T d1vkna1          74 LPAGASYDLVRE--LKGVKIID   93 (176)
T ss_dssp             CSTTHHHHHHTT--CCSCEEEE
T ss_pred             cccHHHHHHHHh--hccceEEe
Confidence            66655 455543  36776653

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=98.99  E-value=3.4e-10  Score=86.15  Aligned_cols=96  Identities=13%  Similarity=0.084  Sum_probs=66.6

Q ss_pred             CCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEE
Q 031216           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (163)
Q Consensus        33 ~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVID  112 (163)
                      .+++||+|+||+|..|+++++.+.+||.+||+.+..++..|+...++.........+.....++...     .+.|+++ 
T Consensus         3 ~~kikVaIlGATGyvG~elirLL~~HP~~ei~~l~S~~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~Dvvf-   76 (183)
T d2cvoa1           3 GEEVRIAVLGASGYTGAEIVRLLANHPQFRIKVMTADRKAGEQFGSVFPHLITQDLPNLVAVKDADF-----SNVDAVF-   76 (183)
T ss_dssp             SSCEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECSTTTTSCHHHHCGGGTTSCCCCCBCGGGCCG-----GGCSEEE-
T ss_pred             CCccEEEEECcccHHHHHHHHHHHhCCCceEEEEeccccCCCccccccccccccccccchhhhhhhh-----cccceee-
Confidence            4579999999999999999999999999999998877778888776543211222233333333332     4899988 


Q ss_pred             ccCchhH-HHHHHHHHHcCCcEEE
Q 031216          113 FTDASTV-YDNVKQATAFGMRSVV  135 (163)
Q Consensus       113 fT~p~~~-~~~~~~al~~G~~vVi  135 (163)
                      ++.|+.. .+++....+.+ .+|.
T Consensus        77 ~alp~~~s~~~~~~l~~~~-~~v~   99 (183)
T d2cvoa1          77 CCLPHGTTQEIIKGLPQEL-KIVD   99 (183)
T ss_dssp             ECCSSSHHHHHHHTSCSSC-EEEE
T ss_pred             eccccchHHHHHHHHHhcC-cccc
Confidence            6656655 56766555554 4444

>d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.99  E-value=2e-09  Score=81.19  Aligned_cols=94  Identities=21%  Similarity=0.154  Sum_probs=66.4

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec---CCCCcchhhhccCCC---CCCcceeCCHHHHHhcccccCCcc
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS---HSVGEDIGMVCDMEQ---PLEIPVMSDLTMVLGSISQSKARA  108 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~---~~~g~~~~~l~g~~~---~~gi~v~~~l~ell~~~~~~~~~D  108 (163)
                      |+||+|+||+|..|+++++.+.+||.+++..+..+   ...|+...+......   .......++.+...      .++|
T Consensus         1 MikVaIiGATGyvG~eLlrlL~~HP~~ei~~l~~~s~~~~aGk~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~d   74 (179)
T d2g17a1           1 MLNTLIVGASGYAGAELVSYVNRHPHMTITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQPMSDVRDFS------ADVD   74 (179)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTCBHHHHCGGGTTTCCCBEEEESCGGGTC------TTCC
T ss_pred             CcEEEEECcccHHHHHHHHHHHhCCCCceEeeEeecccccccccccccccccccccccccccchhhhhhh------cccc
Confidence            89999999999999999999999999999988763   245666554332110   11112223433333      4789


Q ss_pred             EEEEccCchh-HHHHHHHHHHcCCcEEE
Q 031216          109 VVIDFTDAST-VYDNVKQATAFGMRSVV  135 (163)
Q Consensus       109 VVIDfT~p~~-~~~~~~~al~~G~~vVi  135 (163)
                      +++ ++.|+. ..+.+....+.|+.+|-
T Consensus        75 vvf-~alp~~~s~~~~~~~~~~~~~vID  101 (179)
T d2g17a1          75 VVF-LATAHEVSHDLAPQFLQAGCVVFD  101 (179)
T ss_dssp             EEE-ECSCHHHHHHHHHHHHHTTCEEEE
T ss_pred             eee-ccccchhHHHHhhhhhhcCceeec
Confidence            988 555554 57889999999999875

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.86  E-value=2.8e-09  Score=78.24  Aligned_cols=89  Identities=17%  Similarity=0.193  Sum_probs=65.5

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHH--hcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEE
Q 031216           35 NIKVIINGAVKEIGRAAVIAVT--KARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~--~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVID  112 (163)
                      +|||+|+||+|..|+++++.+.  .+|.++|..+..++..|+.+....     .... ..+++....     .+.|+++ 
T Consensus         2 ~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~i~~~~-----~~~~-~~~~~~~~~-----~~~d~vf-   69 (144)
T d2hjsa1           2 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFAE-----SSLR-VGDVDSFDF-----SSVGLAF-   69 (144)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEEETT-----EEEE-CEEGGGCCG-----GGCSEEE-
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCcceeecc-----ccch-hccchhhhh-----ccceEEE-
Confidence            5999999999999999999996  579999998877777777654321     1222 233333222     4789988 


Q ss_pred             ccCchh-HHHHHHHHHHcCCcEEE
Q 031216          113 FTDAST-VYDNVKQATAFGMRSVV  135 (163)
Q Consensus       113 fT~p~~-~~~~~~~al~~G~~vVi  135 (163)
                      |+.|.. ..+++..+.++|+.||-
T Consensus        70 ~a~p~~~s~~~~~~~~~~g~~VID   93 (144)
T d2hjsa1          70 FAAAAEVSRAHAERARAAGCSVID   93 (144)
T ss_dssp             ECSCHHHHHHHHHHHHHTTCEEEE
T ss_pred             ecCCcchhhhhccccccCCceEEe
Confidence            555655 57899999999998875

>d1euca1 c.2.1.8 (A:1-130) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.85  E-value=6.6e-08  Score=69.98  Aligned_cols=111  Identities=14%  Similarity=0.176  Sum_probs=90.5

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEc
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDf  113 (163)
                      +.-||.|-|.+|+-|+.|.+...+. +-++||.+.+...|+.         -.++|||++.+|+.++    ..+|+=+.|
T Consensus        14 k~TrVivQGiTG~~G~~ht~~m~~Y-GT~iVaGVtPgKgG~~---------~~giPVf~tV~eA~~~----~~~daSvIf   79 (130)
T d1euca1          14 KNTKVICQGFTGKQGTFHSQQALEY-GTNLVGGTTPGKGGKT---------HLGLPVFNTVKEAKEQ----TGATASVIY   79 (130)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHH-TCEEEEEECTTCTTCE---------ETTEEEESSHHHHHHH----HCCCEEEEC
T ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHh-cCCeEEeeccCCCCcc---------ccCccchhhHHHHHHh----cCCcEEEEe
Confidence            3479999999999999999998864 8999999987654432         3579999999999975    789987779


Q ss_pred             cCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHh-hhcCeE
Q 031216          114 TDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFC-DKASMV  158 (163)
Q Consensus       114 T~p~~~~~~~~~al~~G~~vVigtt-g~~~e~~~~L~~~A-~~~~Vv  158 (163)
                      -+|..+.+-+..|+++|+++|+--| |...-+.-++.+.+ ++..+.
T Consensus        80 VPp~~a~dAi~EAi~agI~liV~ITEgIPv~Dm~~i~~~~~~~~~~~  126 (130)
T d1euca1          80 VPPPFAAAAINEAIDAEVPLVVCITEGIPQQDMVRVKHRLLRQGKTR  126 (130)
T ss_dssp             CCHHHHHHHHHHHHHTTCSEEEECCCCCCHHHHHHHHHHHTTCSSCE
T ss_pred             cCHHHHHHHHHHHHhCCCCEEEEecCCCCHHHHHHHHHHHHhCCCcE
Confidence            9999999999999999999987777 77776666776654 544443

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.72  E-value=4e-08  Score=71.49  Aligned_cols=108  Identities=19%  Similarity=0.152  Sum_probs=78.3

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEccC
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT~  115 (163)
                      |||+++| +|.||+.+++.+.+ .++++.. .++...  +...+.    ..+..+.++++++..      ..|+||-+..
T Consensus         1 MkIgiIG-~G~mG~~ia~~l~~-~g~~v~~-~~~~~~--~~~~~~----~~~~~~~~~~~e~~~------~~diIi~~v~   65 (152)
T d1i36a2           1 LRVGFIG-FGEVAQTLASRLRS-RGVEVVT-SLEGRS--PSTIER----ARTVGVTETSEEDVY------SCPVVISAVT   65 (152)
T ss_dssp             CEEEEES-CSHHHHHHHHHHHH-TTCEEEE-CCTTCC--HHHHHH----HHHHTCEECCHHHHH------TSSEEEECSC
T ss_pred             CEEEEEc-HHHHHHHHHHHHHH-CCCeEEE-EcCchh--HHHHHh----hhcccccccHHHHHh------hcCeEEEEec
Confidence            6999999 79999999999985 5888875 443211  111111    123445678888875      8999997777


Q ss_pred             chhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeE
Q 031216          116 ASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMV  158 (163)
Q Consensus       116 p~~~~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv  158 (163)
                      |+...+.+..+...-.+.++-.+..+++...+|.+.+++.+.+
T Consensus        66 ~~~~~~~~~~~~~~~~~~~id~st~~p~~~~~l~~~~~~~~~~  108 (152)
T d1i36a2          66 PGVALGAARRAGRHVRGIYVDINNISPETVRMASSLIEKGGFV  108 (152)
T ss_dssp             GGGHHHHHHHHHTTCCSEEEECSCCCHHHHHHHHHHCSSSEEE
T ss_pred             CchHHHHHHhhcccCCceeeccCcCCHHHHHHHHHHHhccCCC
Confidence            7777788877777666777767777888889999988876644

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.70  E-value=3.7e-08  Score=70.52  Aligned_cols=88  Identities=14%  Similarity=0.101  Sum_probs=67.1

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC--CCcchhhhccCCCCCCccee--CCHHHHHhcccccCCccE
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS--VGEDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAV  109 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~--~g~~~~~l~g~~~~~gi~v~--~~l~ell~~~~~~~~~DV  109 (163)
                      ++.||+|+|| |.+|+.+++.+..+++++++|.+|...  .|+.         -.|++||  ++++++..     ..+++
T Consensus         2 ~~~~v~I~Ga-G~~G~~l~~~l~~~~~~~iv~fiDdd~~k~G~~---------I~Gi~V~~~~~l~~~~~-----~~i~i   66 (126)
T d2dt5a2           2 RKWGLCIVGM-GRLGSALADYPGFGESFELRGFFDVDPEKVGRP---------VRGGVIEHVDLLPQRVP-----GRIEI   66 (126)
T ss_dssp             SCEEEEEECC-SHHHHHHHHCSCCCSSEEEEEEEESCTTTTTCE---------ETTEEEEEGGGHHHHST-----TTCCE
T ss_pred             CCceEEEEcC-CHHHHHHHHhHhhcCCcEEEEEEeCchHhcCCE---------ECCEEEecHHHHHHHHh-----hcccE
Confidence            4579999995 999999999888889999999999542  3321         2367776  55556554     57888


Q ss_pred             EEEccCchhHHHHHHHHHHcCCcEEEe
Q 031216          110 VIDFTDASTVYDNVKQATAFGMRSVVY  136 (163)
Q Consensus       110 VIDfT~p~~~~~~~~~al~~G~~vVig  136 (163)
                      ++-+.+.....+.+..+.+.|++-+..
T Consensus        67 ai~~i~~~~~~~I~d~l~~~gIk~I~~   93 (126)
T d2dt5a2          67 ALLTVPREAAQKAADLLVAAGIKGILN   93 (126)
T ss_dssp             EEECSCHHHHHHHHHHHHHHTCCEEEE
T ss_pred             EEEeCCHHHHHHHHHHHHHcCCCEEee
Confidence            775666666678899999999986654

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=98.67  E-value=1.5e-07  Score=69.15  Aligned_cols=86  Identities=9%  Similarity=-0.012  Sum_probs=58.4

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhc---CCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHH-HHHhcccccCCccEE
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKA---RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLT-MVLGSISQSKARAVV  110 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~---~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~-ell~~~~~~~~~DVV  110 (163)
                      |.||+|+||+|..|+++++.+.++   |-.+|+....++..|......     .....+....+ +.+      .++|++
T Consensus         1 MkkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~~~~-----~~~~~~~~~~~~~~~------~~~Div   69 (146)
T d1t4ba1           1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFG-----GTTGTLQDAFDLEAL------KALDII   69 (146)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGGG-----TCCCBCEETTCHHHH------HTCSEE
T ss_pred             CcEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeecccccccccccc-----CCceeeecccchhhh------hcCcEE
Confidence            679999999999999999877655   777888766555555433321     11222332222 233      389998


Q ss_pred             EEccCchhH-HHHHHHHHHcCCc
Q 031216          111 IDFTDASTV-YDNVKQATAFGMR  132 (163)
Q Consensus       111 IDfT~p~~~-~~~~~~al~~G~~  132 (163)
                      + |+.|... .+++..+.+.|..
T Consensus        70 F-~a~~~~~s~~~~~~~~~~g~~   91 (146)
T d1t4ba1          70 V-TCQGGDYTNEIYPKLRESGWQ   91 (146)
T ss_dssp             E-ECSCHHHHHHHHHHHHHTTCC
T ss_pred             E-EecCchHHHHhhHHHHhcCCC
Confidence            8 6666655 6888999999976

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.65  E-value=3.1e-08  Score=73.04  Aligned_cols=91  Identities=13%  Similarity=0.122  Sum_probs=65.3

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhc--CCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEc
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~--~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDf  113 (163)
                      .||+|+||+|..|+++++.+.+|  |..++..+..++..|+......     .........+..+      .+.|+++..
T Consensus         2 ~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s~G~~~~~~~-----~~~~~~~~~~~~~------~~~d~~f~~   70 (154)
T d2gz1a1           2 YTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLKFKD-----QDITIEETTETAF------EGVDIALFS   70 (154)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGGTTCEEEETT-----EEEEEEECCTTTT------TTCSEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHcCCCCceEEEEecccccccccccccC-----Ccccccccchhhh------hhhhhhhhc
Confidence            58999999999999999999999  7888887777666666544321     1223333333333      378888845


Q ss_pred             cCchhHHHHHHHHHHcCCcEEEeC
Q 031216          114 TDASTVYDNVKQATAFGMRSVVYV  137 (163)
Q Consensus       114 T~p~~~~~~~~~al~~G~~vVigt  137 (163)
                      +.+....+.+..+.+.|+.||--.
T Consensus        71 ~~~~~s~~~~~~~~~~~~~VIDlS   94 (154)
T d2gz1a1          71 AGSSTSAKYAPYAVKAGVVVVDNT   94 (154)
T ss_dssp             SCHHHHHHHHHHHHHTTCEEEECS
T ss_pred             cCccchhhHHhhhccccceehhcC
Confidence            555566788899999999988533

>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Vibrio cholerae [TaxId: 666]

Probab=98.65  E-value=1.2e-07  Score=69.94  Aligned_cols=88  Identities=11%  Similarity=-0.045  Sum_probs=59.7

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHh---cCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHH-HHHhcccccCCccEEE
Q 031216           36 IKVIINGAVKEIGRAAVIAVTK---ARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLT-MVLGSISQSKARAVVI  111 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~---~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~-ell~~~~~~~~~DVVI  111 (163)
                      |||+|+||+|..|+++++.+.+   +|..++..+..++..|+... +.    .....+....+ +.+      .+.|+|+
T Consensus         1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~gk~~~-~~----~~~~~~~~~~~~~~~------~~~DvvF   69 (147)
T d1mb4a1           1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVPAPN-FG----KDAGMLHDAFDIESL------KQLDAVI   69 (147)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCSSBCCC-SS----SCCCBCEETTCHHHH------TTCSEEE
T ss_pred             CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEeccccccccccc-cC----Ccceeeecccchhhh------ccccEEE
Confidence            6999999999999999998764   67789987766655444221 11    12223332333 233      4899999


Q ss_pred             EccCchhH-HHHHHHHHHcCCc-EEE
Q 031216          112 DFTDASTV-YDNVKQATAFGMR-SVV  135 (163)
Q Consensus       112 DfT~p~~~-~~~~~~al~~G~~-vVi  135 (163)
                       |+.|+.. .+++...++.|+. +||
T Consensus        70 -~alp~~~s~~~~~~l~~~g~~~~VI   94 (147)
T d1mb4a1          70 -TCQGGSYTEKVYPALRQAGWKGYWI   94 (147)
T ss_dssp             -ECSCHHHHHHHHHHHHHTTCCSEEE
T ss_pred             -EecCchHHHHHhHHHHHcCCceEEE
Confidence             6666655 6888999999976 444

>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PF0725
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.53  E-value=3.6e-07  Score=64.47  Aligned_cols=104  Identities=15%  Similarity=0.224  Sum_probs=81.7

Q ss_pred             eEEEEcCC---CHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEc
Q 031216           37 KVIINGAV---KEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (163)
Q Consensus        37 rV~VvGa~---G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDf  113 (163)
                      +|+|+|++   ++.|..+.+.+. ..++++..+ .+.  +   .++      .|.++|.+++++-+      .+|+++.|
T Consensus         3 sIAVvGaS~~~~k~g~~v~~~L~-~~g~~V~pV-nP~--~---~~i------~G~~~y~sl~~lp~------~~D~vvi~   63 (116)
T d1y81a1           3 KIALVGASKNPAKYGNIILKDLL-SKGFEVLPV-NPN--Y---DEI------EGLKCYRSVRELPK------DVDVIVFV   63 (116)
T ss_dssp             EEEEETCCSCTTSHHHHHHHHHH-HTTCEEEEE-CTT--C---SEE------TTEECBSSGGGSCT------TCCEEEEC
T ss_pred             EEEEEcccCCCCCcHHHHHHHHH-HCCCEEEEE-ccc--c---ccc------cCccccccchhccc------cceEEEEE
Confidence            69999987   789999999987 467887654 332  1   122      36788999999763      89999988


Q ss_pred             cCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeEEcCC
Q 031216          114 TDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVSTGS  162 (163)
Q Consensus       114 T~p~~~~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv~tg~  162 (163)
                      +.|+...+.++.|++.|.+.+...+|...+   ++.+++++.|+-+.|.
T Consensus        64 vp~~~~~~~l~~~~~~g~k~v~~~~g~~~~---~~~~~a~~~gi~vigp  109 (116)
T d1y81a1          64 VPPKVGLQVAKEAVEAGFKKLWFQPGAESE---EIRRFLEKAGVEYSFG  109 (116)
T ss_dssp             SCHHHHHHHHHHHHHTTCCEEEECTTSCCH---HHHHHHHHHTCEEECS
T ss_pred             eCHHHHHHHHHHHHhcCCceEEeccchhhH---HHHHHHHHcCCEEEcC
Confidence            888999999999999999999888876544   4778899988877653

>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.51  E-value=3.8e-07  Score=65.49  Aligned_cols=109  Identities=14%  Similarity=0.122  Sum_probs=79.7

Q ss_pred             CeeEEEEcCC---CHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEE
Q 031216           35 NIKVIINGAV---KEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI  111 (163)
Q Consensus        35 ~irV~VvGa~---G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVI  111 (163)
                      +-+|+|+|++   |++|..+.+.+.+.-.-++..+ .+..     .+      -.|.+.|.|++++-      ..+|.++
T Consensus         8 PksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pV-nP~~-----~~------i~G~~~y~sl~dlp------~~vDlvv   69 (129)
T d2csua1           8 PKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPV-NIKE-----EE------VQGVKAYKSVKDIP------DEIDLAI   69 (129)
T ss_dssp             CSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEE-CSSC-----SE------ETTEECBSSTTSCS------SCCSEEE
T ss_pred             CCeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEe-ccCc-----cc------cCCeEeecchhhcC------CCCceEE
Confidence            4679999998   9999999999875433465543 3321     12      24678899999875      4899999


Q ss_pred             EccCchhHHHHHHHHHHcCCcE-EEeCCCCCH------HHHHHHHHHhhhcCeEEcC
Q 031216          112 DFTDASTVYDNVKQATAFGMRS-VVYVPHIQL------ETVSALSAFCDKASMVSTG  161 (163)
Q Consensus       112 DfT~p~~~~~~~~~al~~G~~v-Vigttg~~~------e~~~~L~~~A~~~~Vv~tg  161 (163)
                      .++.|+.+.+.++.|.+.|++- ++=+.||++      +..++|.++|++.++-+-|
T Consensus        70 i~vp~~~~~~~~~~~~~~g~~~~vi~s~Gf~e~~~~~~~~~~~l~~~a~~~girv~G  126 (129)
T d2csua1          70 IVVPKRFVKDTLIQCGEKGVKGVVIITAGFGETGEEGKREEKELVEIAHKYGMRIIG  126 (129)
T ss_dssp             ECSCHHHHHHHHHHHHHHTCCEEEECCCSSTTSCHHHHHHHHHHHHHHHHHTCEEEC
T ss_pred             EecChHHhHHHHHHHHHcCCCEEEEecccccccchhhHHHHHHHHHHHHHcCCEEeC
Confidence            8888888999999999999884 454446643      2234788889998876554

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.47  E-value=8e-07  Score=65.02  Aligned_cols=108  Identities=16%  Similarity=0.161  Sum_probs=73.2

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc-
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT-  114 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT-  114 (163)
                      ||||++| +|.||+.+++.+.+ .++++. +.|++.  ....++.    +.+..+.++++++..      ++|+||-+- 
T Consensus         1 MkIgiIG-lG~MG~~~A~~L~~-~G~~V~-~~d~~~--~~~~~~~----~~~~~~~~~~~e~~~------~~d~ii~~v~   65 (161)
T d1vpda2           1 MKVGFIG-LGIMGKPMSKNLLK-AGYSLV-VSDRNP--EAIADVI----AAGAETASTAKAIAE------QCDVIITMLP   65 (161)
T ss_dssp             CEEEEEC-CSTTHHHHHHHHHH-TTCEEE-EECSCH--HHHHHHH----HTTCEECSSHHHHHH------HCSEEEECCS
T ss_pred             CEEEEEe-hhHHHHHHHHHHHH-CCCeEE-EEeCCc--chhHHHH----HhhhhhcccHHHHHh------CCCeEEEEcC
Confidence            6899999 79999999999984 789876 577642  2233332    345667789999885      899988554 


Q ss_pred             CchhHHHHH------HHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeEE
Q 031216          115 DASTVYDNV------KQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVS  159 (163)
Q Consensus       115 ~p~~~~~~~------~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv~  159 (163)
                      .|+...+.+      ...++.|.- |+-.+..+++...++.+.+++.++-|
T Consensus        66 ~~~~v~~v~~~~~~~~~~~~~g~i-iid~sT~~p~~~~~~~~~~~~~g~~~  115 (161)
T d1vpda2          66 NSPHVKEVALGENGIIEGAKPGTV-LIDMSSIAPLASREISDALKAKGVEM  115 (161)
T ss_dssp             SHHHHHHHHHSTTCHHHHCCTTCE-EEECSCCCHHHHHHHHHHHHTTTCEE
T ss_pred             CHHHHHHHHhCCcchhhccCCCCE-EEECCCCCHHHHHHHHHHHHHcCCce
Confidence            344444433      223334544 44455566788888888888876644

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.46  E-value=3.1e-07  Score=67.08  Aligned_cols=107  Identities=14%  Similarity=0.165  Sum_probs=71.7

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEccC
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT~  115 (163)
                      |||+++| +|+||+.+++.+.+ .+.++. +.+++.  +...++.   ..+++.++.|.+++.+      ..|+||.+..
T Consensus         1 MkIg~IG-~G~mG~al~~~l~~-~~~~i~-v~~r~~--~~~~~l~---~~~g~~~~~~~~~~~~------~~dvIilavk   66 (152)
T d2ahra2           1 MKIGIIG-VGKMASAIIKGLKQ-TPHELI-ISGSSL--ERSKEIA---EQLALPYAMSHQDLID------QVDLVILGIK   66 (152)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHTT-SSCEEE-EECSSH--HHHHHHH---HHHTCCBCSSHHHHHH------TCSEEEECSC
T ss_pred             CEEEEEe-ccHHHHHHHHHHHh-CCCeEE-EEcChH--HhHHhhc---cccceeeechhhhhhh------ccceeeeecc
Confidence            6899999 69999999999875 466775 455432  2222322   1446777789999986      8999997777


Q ss_pred             chhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeEE
Q 031216          116 ASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVS  159 (163)
Q Consensus       116 p~~~~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv~  159 (163)
                      |+...+.+ ..+..+..+|.-.+|.+.++.++..  .+..+++.
T Consensus        67 p~~~~~vl-~~l~~~~~iis~~agi~~~~l~~~l--~~~~~ivr  107 (152)
T d2ahra2          67 PQLFETVL-KPLHFKQPIISMAAGISLQRLATFV--GQDLPLLR  107 (152)
T ss_dssp             GGGHHHHH-TTSCCCSCEEECCTTCCHHHHHHHH--CTTSCEEE
T ss_pred             hHhHHHHh-hhcccceeEecccccccHHHHHhhh--cccccchh
Confidence            76665544 4466777777766788876644332  33445553

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.43  E-value=1.7e-06  Score=63.42  Aligned_cols=109  Identities=14%  Similarity=0.120  Sum_probs=72.5

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT  114 (163)
                      |.||+++| +|.||..+++.+.+ .+.++. +.|+..  .....+.    ..+.....++.+++.      ..|+++.+-
T Consensus         1 M~kIg~IG-lG~MG~~iA~~L~~-~g~~v~-~~d~~~--~~~~~~~----~~~~~~~~~~~e~~~------~~diii~~v   65 (162)
T d3cuma2           1 MKQIAFIG-LGHMGAPMATNLLK-AGYLLN-VFDLVQ--SAVDGLV----AAGASAARSARDAVQ------GADVVISML   65 (162)
T ss_dssp             CCEEEEEC-CSTTHHHHHHHHHH-TTCEEE-EECSSH--HHHHHHH----HTTCEECSSHHHHHT------SCSEEEECC
T ss_pred             CCEEEEEE-EHHHHHHHHHHHHH-CCCeEE-EEECch--hhhhhhh----hhhccccchhhhhcc------ccCeeeecc
Confidence            67999999 79999999999985 688876 577542  1222222    345556678888875      789877544


Q ss_pred             CchhHHH-HH------HHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeEE
Q 031216          115 DASTVYD-NV------KQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVS  159 (163)
Q Consensus       115 ~p~~~~~-~~------~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv~  159 (163)
                      ......+ ..      ...+..| .+|+-.+..+++...++.+.+++.++-|
T Consensus        66 ~~~~~~~~v~~~~~~~~~~l~~g-~iiid~st~~p~~~~~~~~~~~~~gi~~  116 (162)
T d3cuma2          66 PASQHVEGLYLDDDGLLAHIAPG-TLVLECSTIAPTSARKIHAAARERGLAM  116 (162)
T ss_dssp             SCHHHHHHHHHSTTCHHHHSCTT-CEEEECSCCCHHHHHHHHHHHHHTTCEE
T ss_pred             cchhhHHHHHhccccccccCCCC-CEEEECCCCCHHHHHHHHHHHHHCCCcE
Confidence            3333322 22      1123334 4566677777888888998888877655

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=98.40  E-value=1.9e-07  Score=67.92  Aligned_cols=97  Identities=14%  Similarity=0.149  Sum_probs=66.1

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEccC
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT~  115 (163)
                      |||+++| +|+||+.+++.+.+....++. ++|+..  .....+..   .+++.++++.+++       .+.|+||.+..
T Consensus         1 MkI~fIG-~G~MG~ai~~~l~~~~~~~i~-v~~r~~--~~~~~l~~---~~~~~~~~~~~~v-------~~~Div~lavk   66 (152)
T d1yqga2           1 MNVYFLG-GGNMAAAVAGGLVKQGGYRIY-IANRGA--EKRERLEK---ELGVETSATLPEL-------HSDDVLILAVK   66 (152)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHHHCSCEEE-EECSSH--HHHHHHHH---HTCCEEESSCCCC-------CTTSEEEECSC
T ss_pred             CEEEEEc-CcHHHHHHHHHHHHCCCCcEE-EEeCCh--hHHHHhhh---hcccccccccccc-------cccceEEEecC
Confidence            6999999 599999999988776656665 667543  22333331   4577778777664       37899997778


Q ss_pred             chhHHHHHHHHHHcCCcEEEeCCCCCHHHHH
Q 031216          116 ASTVYDNVKQATAFGMRSVVYVPHIQLETVS  146 (163)
Q Consensus       116 p~~~~~~~~~al~~G~~vVigttg~~~e~~~  146 (163)
                      |....+.++.....+.-+|+-..|.+.++.+
T Consensus        67 P~~~~~v~~~l~~~~~~viS~~ag~~~~~l~   97 (152)
T d1yqga2          67 PQDMEAACKNIRTNGALVLSVAAGLSVGTLS   97 (152)
T ss_dssp             HHHHHHHHTTCCCTTCEEEECCTTCCHHHHH
T ss_pred             HHHHHHhHHHHhhcccEEeecccCCCHHHHH
Confidence            8777766655444555555544588766543

>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PH1109
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.29  E-value=2.6e-06  Score=61.77  Aligned_cols=104  Identities=17%  Similarity=0.148  Sum_probs=79.5

Q ss_pred             eeEEEEcCC---CHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEE
Q 031216           36 IKVIINGAV---KEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (163)
Q Consensus        36 irV~VvGa~---G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVID  112 (163)
                      -+|+|+|++   ++.|..+++.+.+ .+.++..+ .+..     .++      .|.++|.+++++-      ..+|+++-
T Consensus        20 ksIAVVGaS~~~~~~g~~v~~~L~~-~g~~v~pV-nP~~-----~~i------~G~~~~~sl~dlp------~~iD~v~i   80 (139)
T d2d59a1          20 KKIALVGASPKPERDANIVMKYLLE-HGYDVYPV-NPKY-----EEV------LGRKCYPSVLDIP------DKIEVVDL   80 (139)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHH-TTCEEEEE-CTTC-----SEE------TTEECBSSGGGCS------SCCSEEEE
T ss_pred             CeEEEEeecCCCCCchHHHHHHHHH-CCCEEEEE-CCcc-----ccc------CCCcccccccccC------ccceEEEE
Confidence            579999998   8999999999875 57886643 3321     232      3678899999875      48999888


Q ss_pred             ccCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeEEcC
Q 031216          113 FTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVSTG  161 (163)
Q Consensus       113 fT~p~~~~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv~tg  161 (163)
                      |..|+...+.++.|++.|++.|.--+|...+   ++.+.|++.|+.+-|
T Consensus        81 ~vp~~~~~~~~~e~~~~g~k~v~~~~G~~~e---e~~~~a~~~gi~vig  126 (139)
T d2d59a1          81 FVKPKLTMEYVEQAIKKGAKVVWFQYNTYNR---EASKKADEAGLIIVA  126 (139)
T ss_dssp             CSCHHHHHHHHHHHHHHTCSEEEECTTCCCH---HHHHHHHHTTCEEEE
T ss_pred             EeCHHHHHHHHHHHHHhCCCEEEEeccccCH---HHHHHHHHCCCEEEc
Confidence            8889999999999999999988777754333   356678888875544

>d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Escherichia coli [TaxId: 562]

Probab=98.28  E-value=7.2e-07  Score=66.96  Aligned_cols=99  Identities=25%  Similarity=0.223  Sum_probs=63.5

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-------------CCCcchhhh------ccCCCCCCccee--CC
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-------------SVGEDIGMV------CDMEQPLEIPVM--SD   93 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~-------------~~g~~~~~l------~g~~~~~gi~v~--~~   93 (163)
                      .+||||.| .||+||.+.|.+.+.++++++++=|..             ..|+-..++      +-+ ....++++  .+
T Consensus         1 tikigING-FGRIGR~v~R~~~~~~~i~ivaINd~~~~~~~ayLl~yDSvhG~~~~~v~~~~~~l~i-ng~~I~i~~~~~   78 (166)
T d1gado1           1 TIKVGING-FGRIGRIVFRAAQKRSDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIV-NGKKIRVTAERD   78 (166)
T ss_dssp             CEEEEEEC-CSHHHHHHHHHHHTCSSEEEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEE-TTEEEEEECCSS
T ss_pred             CeEEEEEC-CcHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHhhhheecCCCCCcCCeEEEeCCEEEE-CCEEEEEEeCCC
Confidence            37999999 799999999999999999999988842             111100000      000 01224444  46


Q ss_pred             HHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcC-CcEEEeCC
Q 031216           94 LTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFG-MRSVVYVP  138 (163)
Q Consensus        94 l~ell~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G-~~vVigtt  138 (163)
                      ++++-..   +..+|+|||+|=.-...+.+..-++.| +.||+-.|
T Consensus        79 p~~i~W~---~~gvDiViEcTG~f~t~~~~~~hl~~gakkViiSaP  121 (166)
T d1gado1          79 PANLKWD---EVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGP  121 (166)
T ss_dssp             GGGGCHH---HHTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSC
T ss_pred             hHHCCcc---ccCCCEEEEccccccCHHHHHHHhcCCCceEEeecc
Confidence            6665432   247999999995555566666667777 45555444

>d2g0ta1 c.37.1.10 (A:1-338) Hypothetical protein TM0796 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein TM0796
species: Thermotoga maritima [TaxId: 2336]

Probab=98.27  E-value=2.5e-06  Score=70.39  Aligned_cols=103  Identities=12%  Similarity=0.075  Sum_probs=77.4

Q ss_pred             CCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc------Cch
Q 031216           44 VKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT------DAS  117 (163)
Q Consensus        44 ~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT------~p~  117 (163)
                      .|+||..++|.   .+..+++++ |++..|+++++++.. ...++|++.|++++++     ..+|++|.-.      .|+
T Consensus        25 ~gKTa~gLlRy---~~~~~v~~V-~~~~aG~~~~~~l~g-~~~~IPIv~s~~~A~~-----~g~~~liiGvAp~GG~lp~   94 (338)
T d2g0ta1          25 HAKTTYGLLRH---SRLFKPVCV-VAEHEGKMASDFVKP-VRYDVPVVSSVEKAKE-----MGAEVLIIGVSNPGGYLEE   94 (338)
T ss_dssp             GGHHHHHHHHH---CSSEEEEEE-ESSCTTCBGGGTCC--CCSCCBEESSHHHHHH-----TTCCEEEECCCSCCHHHHH
T ss_pred             CchHhhhHHhc---cCCCeEEEE-ECCCCCCchhhhcCC-CCCCCCEeCCHHHHHh-----cCCCEEEEEecccCCcCCH
Confidence            46777776653   456666655 556689999886532 1568999999999998     5899888643      477


Q ss_pred             hHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCe
Q 031216          118 TVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASM  157 (163)
Q Consensus       118 ~~~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~V  157 (163)
                      .+.+.+..|+++|.++|.|-..+ ..+..+|.++|++.++
T Consensus        95 ~w~~~i~~Al~~Gl~IvsGLH~~-L~ddpel~~~A~~~g~  133 (338)
T d2g0ta1          95 QIATLVKKALSLGMDVISGLHFK-ISQQTEFLKIAHENGT  133 (338)
T ss_dssp             HHHHHHHHHHHTTCEEEECCCC---CCHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHcCCeEEecchhh-hccCHHHHHHHHhCCC
Confidence            88899999999999999988755 3345788999988775

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=98.25  E-value=4.5e-06  Score=60.66  Aligned_cols=102  Identities=14%  Similarity=0.189  Sum_probs=63.2

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCC-c-ceeCCHHHHHhcccccCCccEEEEc
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE-I-PVMSDLTMVLGSISQSKARAVVIDF  113 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~g-i-~v~~~l~ell~~~~~~~~~DVVIDf  113 (163)
                      |||+|+| +|+||..+++.+. ..+.++.+ +|++..  ......    ..+ + ...++++ .+      .++|+||.+
T Consensus         1 MkI~iIG-~G~mG~~lA~~l~-~~g~~V~~-~d~~~~--~~~~a~----~~~~~~~~~~~~~-~~------~~~DiIila   64 (165)
T d2f1ka2           1 MKIGVVG-LGLIGASLAGDLR-RRGHYLIG-VSRQQS--TCEKAV----ERQLVDEAGQDLS-LL------QTAKIIFLC   64 (165)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHH-HTTCEEEE-ECSCHH--HHHHHH----HTTSCSEEESCGG-GG------TTCSEEEEC
T ss_pred             CEEEEEe-ecHHHHHHHHHHH-HCCCEEEE-EECCch--HHHHHH----Hhhccceeeeecc-cc------ccccccccc
Confidence            6899999 6999999999986 57899885 586431  111111    112 2 2234544 34      489999966


Q ss_pred             cCchhHHHHHHHHHH--cCCcEEEeCCCCCHHHHHHHHHHhh
Q 031216          114 TDASTVYDNVKQATA--FGMRSVVYVPHIQLETVSALSAFCD  153 (163)
Q Consensus       114 T~p~~~~~~~~~al~--~G~~vVigttg~~~e~~~~L~~~A~  153 (163)
                      +++....+.+.....  ....+|+-+.+........+.+...
T Consensus        65 vp~~~~~~vl~~l~~~l~~~~iv~~~~s~~~~~~~~~~~~~~  106 (165)
T d2f1ka2          65 TPIQLILPTLEKLIPHLSPTAIVTDVASVKTAIAEPASQLWS  106 (165)
T ss_dssp             SCHHHHHHHHHHHGGGSCTTCEEEECCSCCHHHHHHHHHHST
T ss_pred             CcHhhhhhhhhhhhhhcccccceeeccccchHHHHHHHHhhc
Confidence            655555555555433  3556777666666655555555544

>d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein TT1466
species: Thermus thermophilus [TaxId: 274]

Probab=98.21  E-value=2e-06  Score=61.96  Aligned_cols=105  Identities=13%  Similarity=0.110  Sum_probs=79.9

Q ss_pred             CeeEEEEcCC---CHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEE
Q 031216           35 NIKVIINGAV---KEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI  111 (163)
Q Consensus        35 ~irV~VvGa~---G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVI  111 (163)
                      +-+|+|+|+|   ++.|..+.+.+. ..++.... +.....+.   +      -.|.+.|.+++++-      ..+|+++
T Consensus        13 pksIAVVGaS~~~~k~g~~v~~~L~-~~g~~~~~-v~~~~~~~---~------i~g~~~~~~l~~i~------~~iD~v~   75 (136)
T d1iuka_          13 AKTIAVLGAHKDPSRPAHYVPRYLR-EQGYRVLP-VNPRFQGE---E------LFGEEAVASLLDLK------EPVDILD   75 (136)
T ss_dssp             CCEEEEETCCSSTTSHHHHHHHHHH-HTTCEEEE-ECGGGTTS---E------ETTEECBSSGGGCC------SCCSEEE
T ss_pred             CCeEEEEeecCCCCCchHHHHHHHh-cCCCCceE-EEeccccc---e------eeceecccchhhcc------CCCceEE
Confidence            3579999987   789999999987 46777653 22222111   1      23678899998875      4899999


Q ss_pred             EccCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeEE
Q 031216          112 DFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVS  159 (163)
Q Consensus       112 DfT~p~~~~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv~  159 (163)
                      -|..|+...+.++.|.+.|+..+.-.+|...+   ++.++|+++|+-+
T Consensus        76 v~~p~~~v~~~v~~~~~~g~k~i~~q~G~~~~---e~~~~a~~~Gi~v  120 (136)
T d1iuka_          76 VFRPPSALMDHLPEVLALRPGLVWLQSGIRHP---EFEKALKEAGIPV  120 (136)
T ss_dssp             ECSCHHHHTTTHHHHHHHCCSCEEECTTCCCH---HHHHHHHHTTCCE
T ss_pred             EeccHHHHHHHHHHHHhhCCCeEEEecCccCH---HHHHHHHHcCCEE
Confidence            89989999999999999999999888887544   4788899988744

>d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Human(Homo sapiens), liver isoform [TaxId: 9606]

Probab=98.18  E-value=1.3e-06  Score=65.58  Aligned_cols=100  Identities=17%  Similarity=0.203  Sum_probs=62.1

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCC-------------------CCCCccee--CC
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDME-------------------QPLEIPVM--SD   93 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~-------------------~~~gi~v~--~~   93 (163)
                      ++||||.| .||+||.+.|.+.+.++++++++-|+...-+.+.-++..+                   ....++++  .+
T Consensus         1 kikIgING-FGRIGR~v~R~~~~~~~~~ivaINd~~~~~~~~ayLlkyDS~hG~~~~~v~~~~~~l~i~~~~I~~~~~~~   79 (169)
T d1u8fo1           1 KVKVGVNG-FGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVINGNPITIFQERD   79 (169)
T ss_dssp             CCEEEEEC-CSHHHHHHHHHHHHHCSSEEEEEECSSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSS
T ss_pred             CcEEEEEC-CcHHHHHHHHHHHHCCCcEEEEecCCCccHHHHHHHHhhccccCCcCCeEEEECCEEEECCEEEEEEECCC
Confidence            58999999 7999999999999999999999988410000111111000                   01123333  45


Q ss_pred             HHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCC-cEEEeCC
Q 031216           94 LTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGM-RSVVYVP  138 (163)
Q Consensus        94 l~ell~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~-~vVigtt  138 (163)
                      ++++-..   +..+|+|||+|=.-...+.+..-++.|. .|++-.|
T Consensus        80 p~~i~W~---~~~vDiViEcTG~f~~~~~~~~hl~~gakkViiSaP  122 (169)
T d1u8fo1          80 PSKIKWG---DAGAEYVVESTGVFTTMEKAGAHLQGGAKRVIISAP  122 (169)
T ss_dssp             GGGCCTT---TTTCCEEEECSSSCCSHHHHGGGGGGTCSEEEESSC
T ss_pred             hhhCCcc---ccCCCEEEEecceeccHHHHHHHHhcCCceEeeccc
Confidence            5665542   3579999999955555555555566774 4555444

>d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Achromobacter xylosoxidans [TaxId: 85698]

Probab=98.10  E-value=3.7e-06  Score=63.21  Aligned_cols=99  Identities=22%  Similarity=0.230  Sum_probs=61.1

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHh---cCCcEEEEEEecCC-------------CCcchhhhc------cCCCCCCccee-
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTK---ARGMEVAGAIDSHS-------------VGEDIGMVC------DMEQPLEIPVM-   91 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~---~~~~eLvgvid~~~-------------~g~~~~~l~------g~~~~~gi~v~-   91 (163)
                      .|||||.| .||+||.+.|.+.+   .++++++++-|...             .|+-..++.      -+ ....++++ 
T Consensus         1 tikigING-fGRIGR~v~R~~~~~~~~~~~~vvaINd~~~~~~~ayLlkyDS~hG~~~~~v~~~~~~l~i-~g~~i~i~~   78 (173)
T d1obfo1           1 TIRVAING-YGRIGRNILRAHYEGGKSHDIEIVAINDLGDPKTNAHLTRYDTAHGKFPGTVSVNGSYMVV-NGDKIRVDA   78 (173)
T ss_dssp             CEEEEEEC-CSHHHHHHHHHHHHTTSCSSEEEEEEECSSCHHHHHHHHHEETTTEECSSCEEEETTEEEE-TTEEEEEEC
T ss_pred             CeEEEEEC-CcHHHHHHHHHHHhCCCCCCeEEEEEcCCCChHHHHHhhcccccCCCcCceEEeccceEEE-CCEEEEEEe
Confidence            37999999 79999999999874   67899999887420             111000000      00 01223443 


Q ss_pred             -CCHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCC-cEEEeCC
Q 031216           92 -SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGM-RSVVYVP  138 (163)
Q Consensus        92 -~~l~ell~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~-~vVigtt  138 (163)
                       .+++++-..   +..+|+|||+|-.-...+.+..-++.|. .||+-.|
T Consensus        79 ~~~p~~i~W~---~~gvDiViEcTG~f~~~~~a~~hl~~GakkViiSAP  124 (173)
T d1obfo1          79 NRNPAQLPWG---ALKVDVVLECTGFFTTKEKAGAHIKGGAKKVIISAP  124 (173)
T ss_dssp             CSCGGGSCTT---TTTCSEEEECSSSCCSHHHHHHHHHHTCSEEEESSC
T ss_pred             cCCHHHCccc---ccccceEEEecccccCHHHHHHHhccCCcceEEecC
Confidence             566666543   3579999999955444555556666674 4555444

>d1k3ta1 c.2.1.3 (A:1-164,A:334-359) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.06  E-value=3.9e-06  Score=64.01  Aligned_cols=35  Identities=34%  Similarity=0.475  Sum_probs=30.3

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhc----CCcEEEEEEec
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKA----RGMEVAGAIDS   69 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~----~~~eLvgvid~   69 (163)
                      ++|||||.| .||+||.+.|.+.+.    ++++++++.|.
T Consensus         1 M~ikigING-FGRIGR~vlR~~~~~~~~~~~i~iv~Ind~   39 (190)
T d1k3ta1           1 MPIKVGING-FGRIGRMVFQALCEDGLLGTEIDVVAVVDM   39 (190)
T ss_dssp             CCEEEEEEC-CSHHHHHHHHHHHHTTCBTTTEEEEEEEES
T ss_pred             CCeEEEEEC-CChHHHHHHHHHHHcCCCCCCeEEEEEecC
Confidence            468999999 799999999987654    67999999985

>d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=98.05  E-value=4.9e-06  Score=62.51  Aligned_cols=99  Identities=20%  Similarity=0.161  Sum_probs=58.4

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcC--CcEEEEEEecC-------------CCCcchhhhc--cCC----CCCCccee--C
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKAR--GMEVAGAIDSH-------------SVGEDIGMVC--DME----QPLEIPVM--S   92 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~--~~eLvgvid~~-------------~~g~~~~~l~--g~~----~~~gi~v~--~   92 (163)
                      |||||.| .||+||.+.|.+.+.+  +++++++=|..             ..|.-..++.  +-.    ....++++  .
T Consensus         1 ikIgING-fGRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~ayLlkyDSvhG~~~~~i~~~~~~~~~ing~~I~~~~~~   79 (172)
T d1rm4a1           1 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVINDTGGVKQASHLLKYDSILGTFDADVKTAGDSAISVDGKVIKVVSDR   79 (172)
T ss_dssp             EEEEEEC-CSHHHHHHHHHHHHCSSCSEEEEEEECTTCHHHHHHHHHCCTTTCSCSSCEEECTTSEEEETTEEEEEECCS
T ss_pred             CEEEEEC-CCHHHHHHHHHHHhCCCCCEEEEEEcCCCCHHHHHHHHhcCcccccccceeEecCCcceEECCEEEEEecCC
Confidence            7999999 7999999999887644  49999887742             1121100000  000    01123333  4


Q ss_pred             CHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCC-cEEEeCC
Q 031216           93 DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGM-RSVVYVP  138 (163)
Q Consensus        93 ~l~ell~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~-~vVigtt  138 (163)
                      +++++-..   +..+|+|||+|=.-...+.+..-++.|. .||+-.|
T Consensus        80 ~p~~i~W~---~~gvDiViEcTG~f~~~~~~~~hl~~GakkViiSAP  123 (172)
T d1rm4a1          80 NPVNLPWG---DMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVLITAP  123 (172)
T ss_dssp             CGGGSCHH---HHTCCEEEECSSSCCBHHHHHHHHHTTCSCEEESSC
T ss_pred             ChHHCChh---hcCCCEEEecCceEccHHHHHHHHhcCCceEEeecc
Confidence            55554432   2479999999844444455555666774 6666554

>d2b4ro1 c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=98.05  E-value=4.4e-06  Score=62.41  Aligned_cols=99  Identities=18%  Similarity=0.166  Sum_probs=62.1

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCC-------------------CCCCccee--CCH
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDME-------------------QPLEIPVM--SDL   94 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~-------------------~~~gi~v~--~~l   94 (163)
                      .||||.| .||+||.+.|.+.+.++++++++=|+...-..+.-++..+                   ....++++  .++
T Consensus         1 tkigING-fGRIGR~v~R~~~~~~~~~iv~INd~~~d~~~~ayLlkyDS~hG~~~~~v~~~~~~l~i~~~~I~i~~~~~p   79 (166)
T d2b4ro1           1 TKLGING-FGRIGRLVFRAAFGRKDIEVVAINDPFMDLNHLCYLLKYDSVHGQFPCEVTHADGFLLIGEKKVSVFAEKDP   79 (166)
T ss_dssp             EEEEEEC-CSHHHHHHHHHHHTCSSEEEEEEECTTCCHHHHHHHHHCCTTTCSCSSCEEEETTEEEESSCEEEEECCSSG
T ss_pred             CeEEEEC-CCHHHHHHHHHHhhCCCcEEEEECCCCCChHHhhhhhhcccccccceeeeccCCceEEecCcEEEEEeCCCh
Confidence            3899999 7999999999999999999999888421001111111000                   01223343  566


Q ss_pred             HHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCC-cEEEeCC
Q 031216           95 TMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGM-RSVVYVP  138 (163)
Q Consensus        95 ~ell~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~-~vVigtt  138 (163)
                      +++...   +..+|+|||+|=.-...+.+...++.|. .||+-.|
T Consensus        80 ~~i~W~---~~gvdiViEcTG~f~~~~~~~~hl~~gakkViiSAP  121 (166)
T d2b4ro1          80 SQIPWG---KCQVDVVCESTGVFLTKELASSHLKGGAKKVIMSAP  121 (166)
T ss_dssp             GGCCHH---HHTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSC
T ss_pred             HHcccc---ccCCCEEEEecccccchhhhhhhhccCCCEEEEecc
Confidence            665442   3489999999855555566666677774 5555343

>d3cmco1 c.2.1.3 (O:0-148,O:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Bacillus stearothermophilus, nca 1503 [TaxId: 1422]

Probab=97.99  E-value=5.6e-06  Score=62.15  Aligned_cols=98  Identities=24%  Similarity=0.227  Sum_probs=62.7

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-------------CCCcchhhh------ccCCCCCCccee--CCH
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-------------SVGEDIGMV------CDMEQPLEIPVM--SDL   94 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~-------------~~g~~~~~l------~g~~~~~gi~v~--~~l   94 (163)
                      +||||.| .||+||.+.|.+.+.++++++++=|..             ..|+-..++      +-+ ....+.++  .++
T Consensus         2 ikIgING-fGRIGR~v~R~~l~~~~~~ivaINd~~d~~~~ayll~yDS~hG~~~~~v~~~~~~l~i-~g~~i~i~~~~~p   79 (171)
T d3cmco1           2 VKVGING-FGRIGRNVFRAALKNPDIEVVAVNDLTDANTLAHLLKYDSVHGRLDAEVSVNGNNLVV-NGKEIIVKAERDP   79 (171)
T ss_dssp             EEEEEES-CSHHHHHHHHHHTTCTTEEEEEEECSSCHHHHHHHHHEETTTEECSSCEEEETTEEEE-TTEEEEEECCSSG
T ss_pred             eEEEEEC-CCHHHHHHHHHHhhCCCcEEEEEcCCCCHHHHhhhhcccccCCcccccccccCCCEEe-CCcceeeEecCCH
Confidence            7999999 799999999999999999999997731             011110000      000 01123333  566


Q ss_pred             HHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCC-cEEEeCC
Q 031216           95 TMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGM-RSVVYVP  138 (163)
Q Consensus        95 ~ell~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~-~vVigtt  138 (163)
                      +++...   +..+|+|||+|=.-...+.+..-++.|. .||+-.|
T Consensus        80 ~~i~W~---~~~vDiViEcTG~f~t~~~~~~hl~~gakkViiSap  121 (171)
T d3cmco1          80 ENLAWG---EIGVDIVVESTGRFTKREDAAKHLEAGAKKVIISAP  121 (171)
T ss_dssp             GGCCTG---GGTCCEEEECSSSCCBHHHHTHHHHTTCSEEEESSC
T ss_pred             HHcccc---ccCCcEEEEecCccCCHHHHHHHHhCCCceEEEecc
Confidence            665442   3579999999955555666666677775 5555444

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.98  E-value=2.8e-05  Score=55.61  Aligned_cols=110  Identities=15%  Similarity=0.129  Sum_probs=69.4

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCccee------CCHHHHHhcccccCCccE
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM------SDLTMVLGSISQSKARAV  109 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~------~~l~ell~~~~~~~~~DV  109 (163)
                      .||.|+|| |+||+.+++.+. ..+.+++ ++|++.  ..+.++.... ......+      ...++.+      ...|+
T Consensus         3 K~IliiGa-G~~G~~~a~~L~-~~g~~V~-v~dr~~--~~a~~l~~~~-~~~~~~~~~~~~~~~~~~~i------~~~~~   70 (182)
T d1e5qa1           3 KSVLMLGS-GFVTRPTLDVLT-DSGIKVT-VACRTL--ESAKKLSAGV-QHSTPISLDVNDDAALDAEV------AKHDL   70 (182)
T ss_dssp             CEEEEECC-STTHHHHHHHHH-TTTCEEE-EEESCH--HHHHHHHTTC-TTEEEEECCTTCHHHHHHHH------TTSSE
T ss_pred             CEEEEECC-CHHHHHHHHHHH-hCCCEEE-EEECCh--HHHHHHHhcc-cccccccccccchhhhHhhh------hccce
Confidence            58999995 999999999887 5578865 788653  1222322110 1001111      1223334      37888


Q ss_pred             EEEccCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeEE
Q 031216          110 VIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVS  159 (163)
Q Consensus       110 VIDfT~p~~~~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv~  159 (163)
                      ++..++.......+..+.+.+++++. .+ ...+....|.+.+++...++
T Consensus        71 ~i~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~l~~~~~~~~~~~  118 (182)
T d1e5qa1          71 VISLIPYTFHATVIKSAIRQKKHVVT-TS-YVSPAMMELDQAAKDAGITV  118 (182)
T ss_dssp             EEECSCGGGHHHHHHHHHHHTCEEEC-SS-CCCHHHHHTHHHHHHTTCEE
T ss_pred             eEeeccchhhhHHHHHHHhhccceee-cc-cCcHHHHHHHHHhcccccee
Confidence            88777777777888999999999764 33 33344567777777655543

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=97.94  E-value=1.4e-05  Score=60.23  Aligned_cols=103  Identities=15%  Similarity=0.189  Sum_probs=64.8

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC--------CCcchhhhccCCCCCCcceeCCHHHHHhcccccC
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS--------VGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSK  105 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~--------~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~  105 (163)
                      .|.||+|+| +|.||..++..+. ..+.++. +.+++.        .++...-+.+..-+.++.+++|+++++.      
T Consensus         6 ~m~KI~ViG-aG~wGtAlA~~La-~~g~~V~-l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a~~------   76 (189)
T d1n1ea2           6 YLNKAVVFG-SGAFGTALAMVLS-KKCREVC-VWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYN------   76 (189)
T ss_dssp             CEEEEEEEC-CSHHHHHHHHHHH-TTEEEEE-EECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHT------
T ss_pred             eeceEEEEC-CCHHHHHHHHHHH-HcCCeEE-EEEecHHHHHHHhhcccccccccccccccccccchhhhhccC------
Confidence            467899999 5999999998886 4555655 444321        0111110111111446778899999985      


Q ss_pred             CccEEEEccCchhH-HHHHHH--------HHHcCCcEEEeCCCCCHHHHH
Q 031216          106 ARAVVIDFTDASTV-YDNVKQ--------ATAFGMRSVVYVPHIQLETVS  146 (163)
Q Consensus       106 ~~DVVIDfT~p~~~-~~~~~~--------al~~G~~vVigttg~~~e~~~  146 (163)
                      +.|+|| ++.|... .+.++.        .+..+.++|+.+-|++.+...
T Consensus        77 ~ad~ii-iavPs~~~~~~~~~~~~~~~~~~~~~~~~ii~~tKGie~~t~~  125 (189)
T d1n1ea2          77 GAEIIL-FVIPTQFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIERSTLK  125 (189)
T ss_dssp             TCSCEE-ECSCHHHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCTTTCC
T ss_pred             CCCEEE-EcCcHHHHHHHHHHHHhhhhhhhccCCcEEEEEECCCccCCcc
Confidence            889988 5555544 344432        356788898877788654433

>d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermotoga maritima [TaxId: 2336]

Probab=97.89  E-value=1.2e-05  Score=60.27  Aligned_cols=97  Identities=22%  Similarity=0.207  Sum_probs=57.9

Q ss_pred             eEEEEcCCCHHHHHHHHHHHh--cCCcEEEEEEecC-------------CCCcchhhh------ccCCCCCCccee--CC
Q 031216           37 KVIINGAVKEIGRAAVIAVTK--ARGMEVAGAIDSH-------------SVGEDIGMV------CDMEQPLEIPVM--SD   93 (163)
Q Consensus        37 rV~VvGa~G~mG~~i~~~i~~--~~~~eLvgvid~~-------------~~g~~~~~l------~g~~~~~gi~v~--~~   93 (163)
                      ||||.| .||+||.+.|.+.+  .+++++|++=|..             ..|.--.++      +-. ....++++  .+
T Consensus         2 kIgING-fGRIGR~v~R~~~~~~~~~i~vvaINd~~~~e~~ayLlkyDS~hG~~~~~v~~~~~~l~i-ng~~I~~~~~~~   79 (169)
T d1hdgo1           2 RVAING-FGRIGRLVYRIIYERKNPDIEVVAINDLTDTKTLAHLLKYDSVHKKFPGKVEYTENSLIV-DGKEIKVFAEPD   79 (169)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHHHTCTTCEEEEEECSSCHHHHHHHHHCCTTTCCCSSCEEECSSEEEE-TTEEEEEECCSS
T ss_pred             EEEEEC-CChHHHHHHHHHHhccCCCEEEEEeccCccHHHHHHHHhccccccccCceEEEECCEEEE-CCEEEEEEeCCC
Confidence            899999 79999999999875  5689999987731             112110000      000 01123333  45


Q ss_pred             HHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCC-cEEEeCC
Q 031216           94 LTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGM-RSVVYVP  138 (163)
Q Consensus        94 l~ell~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~-~vVigtt  138 (163)
                      ++++-..   +..+|+|||+|=.-...+.+...++.|. .||+-.|
T Consensus        80 p~~i~W~---~~gvD~ViEcTG~f~t~~~~~~hl~~GakkViiSAP  122 (169)
T d1hdgo1          80 PSKLPWK---DLGVDFVIESTGVFRNREKAELHLQAGAKKVIITAP  122 (169)
T ss_dssp             GGGSCHH---HHTCCEEEECSSSCCBHHHHTHHHHTTCSEEEESSC
T ss_pred             hhhCCcc---ccCCCEEEEecceeccccchhhhccCCCceEEEecc
Confidence            5555432   2478999998855445555666666774 5666444

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=97.88  E-value=0.00014  Score=53.28  Aligned_cols=115  Identities=10%  Similarity=0.125  Sum_probs=66.6

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCC-CCCCcceeCCHHHHHhcccccCCccEEEEcc
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDME-QPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~-~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT  114 (163)
                      -+|+++| +|.||..+++.+.+ .++++. ++|++.  ....++.... .........+.+++.+.   -..+|+++.+.
T Consensus         3 ~nIg~IG-lG~MG~~mA~~L~~-~G~~V~-v~dr~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~ii~~~   74 (176)
T d2pgda2           3 ADIALIG-LAVMGQNLILNMND-HGFVVC-AFNRTV--SKVDDFLANEAKGTKVLGAHSLEEMVSK---LKKPRRIILLV   74 (176)
T ss_dssp             BSEEEEC-CSHHHHHHHHHHHH-TTCCEE-EECSST--HHHHHHHHTTTTTSSCEECSSHHHHHHH---BCSSCEEEECS
T ss_pred             CcEEEEe-EhHHHHHHHHHHHH-CCCeEE-EEcCCH--HHHHHHHHhccccccccchhhhhhhhhh---hcccceEEEec
Confidence            5799999 79999999999985 688886 578643  2223332110 01112223445544332   14778777544


Q ss_pred             Cc-hhHHHHH---HHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeEE
Q 031216          115 DA-STVYDNV---KQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVS  159 (163)
Q Consensus       115 ~p-~~~~~~~---~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv~  159 (163)
                      .+ +...+..   ...++.|. +|+-++..++++..++.+..++.++.|
T Consensus        75 ~~~~~v~~v~~~l~~~~~~g~-iiid~sT~~~~~~~~~~~~~~~~g~~~  122 (176)
T d2pgda2          75 KAGQAVDNFIEKLVPLLDIGD-IIIDGGNSEYRDTMRRCRDLKDKGILF  122 (176)
T ss_dssp             CTTHHHHHHHHHHHHHCCTTC-EEEECSCCCHHHHHHHHHHHHHTTCEE
T ss_pred             CchHHHHHHHHHHHhccccCc-EEEecCcchhHHHHHHHHHHHhcCCce
Confidence            33 3333333   23334454 455566666777778877777777644

>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermus aquaticus [TaxId: 271]

Probab=97.85  E-value=1.4e-05  Score=59.66  Aligned_cols=98  Identities=28%  Similarity=0.238  Sum_probs=58.3

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-------------CCCcchhhhccCC-----CCCCccee--CCHH
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-------------SVGEDIGMVCDME-----QPLEIPVM--SDLT   95 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~-------------~~g~~~~~l~g~~-----~~~gi~v~--~~l~   95 (163)
                      |||||.| .||+||.+.|.+. .++++++++-|..             ..|+-..++.-..     ....++++  .+++
T Consensus         1 ikigING-fGRIGR~~~R~l~-~~~i~iv~INd~~~~~~~ayLl~yDS~hG~~~~~v~~~~~~l~i~g~~I~~~~~~~p~   78 (168)
T d2g82a1           1 MKVGING-FGRIGRQVFRILH-SRGVEVALINDLTDNKTLAHLLKYDSIYHRFPGEVAYDDQYLYVDGKAIRATAVKDPK   78 (168)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHH-HHTCCEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEECSSEEEETTEEEEEECCSSGG
T ss_pred             CEEEEEC-CcHHHHHHHHHHh-cCCCEEEEECCCcchhhhhheeecccccCccccccccccceeEecceeEEEEecCChH
Confidence            6999999 7999999999876 5789999988842             1111000000000     01123333  4566


Q ss_pred             HHHhcccccCCccEEEEccCchhHHHHHHHHHHcC-CcEEEeCC
Q 031216           96 MVLGSISQSKARAVVIDFTDASTVYDNVKQATAFG-MRSVVYVP  138 (163)
Q Consensus        96 ell~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G-~~vVigtt  138 (163)
                      ++-..   +..+|+|||+|-.-...+.+...++.| +.||+-.|
T Consensus        79 ~i~W~---~~gvdiViEcTG~f~~~~~~~~hl~~gakkViiSAP  119 (168)
T d2g82a1          79 EIPWA---EAGVGVVIESTGVFTDADKAKAHLEGGAKKVIITAP  119 (168)
T ss_dssp             GCCTG---GGTEEEEEECSSSCCBHHHHTHHHHTTCSEEEESSC
T ss_pred             HCccc---ccCCceeEeccccccchHHhhhhhccccceeeeccc
Confidence            65543   357999999985444445555556667 45555333

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.81  E-value=4.3e-05  Score=56.83  Aligned_cols=88  Identities=22%  Similarity=0.253  Sum_probs=55.4

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcce-------eCCHHHHHhcccccCC
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-------MSDLTMVLGSISQSKA  106 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v-------~~~l~ell~~~~~~~~  106 (163)
                      .|.||+|+||+|++|+.+++.+.+ .+.++.++..+...   .....    +.++.+       .+++++++.      .
T Consensus         2 ~~kkIlV~GatG~iG~~v~~~Ll~-~g~~V~~~~R~~~~---~~~~~----~~~~~~~~gD~~d~~~l~~al~------~   67 (205)
T d1hdoa_           2 AVKKIAIFGATGQTGLTTLAQAVQ-AGYEVTVLVRDSSR---LPSEG----PRPAHVVVGDVLQAADVDKTVA------G   67 (205)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHH-TTCEEEEEESCGGG---SCSSS----CCCSEEEESCTTSHHHHHHHHT------T
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHH-CcCEEEEEEcChhh---ccccc----ccccccccccccchhhHHHHhc------C
Confidence            368999999999999999999885 58999988753211   00100    112221       134455564      8


Q ss_pred             ccEEEEccCc-----------hhHHHHHHHHHHcCCcEEE
Q 031216          107 RAVVIDFTDA-----------STVYDNVKQATAFGMRSVV  135 (163)
Q Consensus       107 ~DVVIDfT~p-----------~~~~~~~~~al~~G~~vVi  135 (163)
                      +|+||.+..+           ......+..+.++|++-++
T Consensus        68 ~d~vi~~~g~~~~~~~~~~~~~~~~~l~~aa~~~~v~r~i  107 (205)
T d1hdoa_          68 QDAVIVLLGTRNDLSPTTVMSEGARNIVAAMKAHGVDKVV  107 (205)
T ss_dssp             CSEEEECCCCTTCCSCCCHHHHHHHHHHHHHHHHTCCEEE
T ss_pred             CCEEEEEeccCCchhhhhhhHHHHHHHHHHHHhcCCCeEE
Confidence            8999976421           1223456777788876443

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=97.79  E-value=0.00025  Score=50.41  Aligned_cols=93  Identities=13%  Similarity=0.173  Sum_probs=58.1

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEc
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDf  113 (163)
                      .|.||+|+|++|.||+.+++.+. ..+.++.+ +|+...                   .+.++..      ...|.++..
T Consensus         8 ~~~kI~iIGg~G~mG~~la~~L~-~~G~~V~~-~d~~~~-------------------~~~~~~~------~~~~~v~~~   60 (152)
T d2pv7a2           8 DIHKIVIVGGYGKLGGLFARYLR-ASGYPISI-LDREDW-------------------AVAESIL------ANADVVIVS   60 (152)
T ss_dssp             TCCCEEEETTTSHHHHHHHHHHH-TTTCCEEE-ECTTCG-------------------GGHHHHH------TTCSEEEEC
T ss_pred             CCCeEEEEcCCCHHHHHHHHHHH-HcCCCcEe-cccccc-------------------cccchhh------hhccccccc
Confidence            45799999977999999999987 56888874 564321                   1222333      367777766


Q ss_pred             cCchhHHHHHHHHHHc--CCcEEEeCCCCCHHHHHHHHHHhh
Q 031216          114 TDASTVYDNVKQATAF--GMRSVVYVPHIQLETVSALSAFCD  153 (163)
Q Consensus       114 T~p~~~~~~~~~al~~--G~~vVigttg~~~e~~~~L~~~A~  153 (163)
                      +.+....+.+...+..  .-.+|+-++....+..+++.+...
T Consensus        61 ~~~~~~~~v~~~~~~~~~~~~iiiD~~Svk~~~~~~~~~~~~  102 (152)
T d2pv7a2          61 VPINLTLETIERLKPYLTENMLLADLTSVKREPLAKMLEVHT  102 (152)
T ss_dssp             SCGGGHHHHHHHHGGGCCTTSEEEECCSCCHHHHHHHHHHCS
T ss_pred             cchhhheeeeecccccccCCceEEEecccCHHHHHHHHHHcc
Confidence            6666665555554443  123555555566666666655443

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.77  E-value=0.0002  Score=51.52  Aligned_cols=107  Identities=16%  Similarity=0.091  Sum_probs=62.7

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhc-CCcEEEEEEecCCCCcchhhhccCCCCCCc--ceeCCHHHHHhcccccCCccEEE
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAIDSHSVGEDIGMVCDMEQPLEI--PVMSDLTMVLGSISQSKARAVVI  111 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~-~~~eLvgvid~~~~g~~~~~l~g~~~~~gi--~v~~~l~ell~~~~~~~~~DVVI  111 (163)
                      |.||+|+| +|.||..+++.+.+. ...++.+ +|++....+...      +.+.  ....+.++...     ..+|+||
T Consensus         1 Mk~I~IIG-~G~mG~sla~~L~~~g~~~~I~~-~D~~~~~~~~a~------~~~~~~~~~~~~~~~~~-----~~~dlIi   67 (171)
T d2g5ca2           1 MQNVLIVG-VGFMGGSFAKSLRRSGFKGKIYG-YDINPESISKAV------DLGIIDEGTTSIAKVED-----FSPDFVM   67 (171)
T ss_dssp             CCEEEEES-CSHHHHHHHHHHHHTTCCSEEEE-ECSCHHHHHHHH------HTTSCSEEESCGGGGGG-----TCCSEEE
T ss_pred             CCEEEEEc-cCHHHHHHHHHHHhcCCCeEEEE-EECChHHHHHHH------Hhhcchhhhhhhhhhhc-----ccccccc
Confidence            56899999 699999999998754 3457665 575421111111      1121  23455555443     4899999


Q ss_pred             EccCchhHHHHHHHHHH--cCCcEEEeCCCCCHHHHHHHHHHhhh
Q 031216          112 DFTDASTVYDNVKQATA--FGMRSVVYVPHIQLETVSALSAFCDK  154 (163)
Q Consensus       112 DfT~p~~~~~~~~~al~--~G~~vVigttg~~~e~~~~L~~~A~~  154 (163)
                      .+++|+...+.+.....  ..-.+|+-..+....-.+.+.+...+
T Consensus        68 la~p~~~~~~vl~~l~~~~~~~~ii~d~~s~k~~~~~~~~~~~~~  112 (171)
T d2g5ca2          68 LSSPVRTFREIAKKLSYILSEDATVTDQGSVKGKLVYDLENILGK  112 (171)
T ss_dssp             ECSCHHHHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGG
T ss_pred             ccCCchhhhhhhhhhhccccccccccccccccHHHHHHHHHhhcc
Confidence            77777777666655433  23356665555444444555554333

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=97.76  E-value=7.7e-05  Score=53.07  Aligned_cols=99  Identities=14%  Similarity=0.168  Sum_probs=58.4

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCC-CCCCcceeCCHHHHHhcccccCCccEEEEcc
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDME-QPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~-~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT  114 (163)
                      |||+|+|+ |.||..++..+. ..+.++..+............ .+.. ......+..+..+.+.      .+|+||.++
T Consensus         1 MkI~IiGa-G~iG~~~a~~L~-~~G~~V~~~~r~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~------~~D~iii~v   71 (167)
T d1ks9a2           1 MKITVLGC-GALGQLWLTALC-KQGHEVQGWLRVPQPYCSVNL-VETDGSIFNESLTANDPDFLA------TSDLLLVTL   71 (167)
T ss_dssp             CEEEEECC-SHHHHHHHHHHH-HTTCEEEEECSSCCSEEEEEE-ECTTSCEEEEEEEESCHHHHH------TCSEEEECS
T ss_pred             CEEEEECc-CHHHHHHHHHHH-HCCCceEEEEcCHHHhhhhcc-ccCCccccccccccchhhhhc------ccceEEEee
Confidence            79999995 999999999987 468888765443221111111 1110 0111223334444443      899999777


Q ss_pred             CchhHHHHHHHHH---HcCCcEEEeCCCCCHH
Q 031216          115 DASTVYDNVKQAT---AFGMRSVVYVPHIQLE  143 (163)
Q Consensus       115 ~p~~~~~~~~~al---~~G~~vVigttg~~~e  143 (163)
                      .+..+.+.++...   ..+..++....|+..+
T Consensus        72 ka~~~~~~~~~l~~~~~~~~~Iv~~qNG~~~~  103 (167)
T d1ks9a2          72 KAWQVSDAVKSLASTLPVTTPILLIHNGMGTI  103 (167)
T ss_dssp             CGGGHHHHHHHHHTTSCTTSCEEEECSSSCTT
T ss_pred             cccchHHHHHhhccccCcccEEeeccCcccHH
Confidence            6666655555443   3466688777787543

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.64  E-value=0.00029  Score=51.30  Aligned_cols=114  Identities=11%  Similarity=0.158  Sum_probs=64.8

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhcc---C-CCCCCcceeCCHHHHHhcccccCCccEEE
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCD---M-EQPLEIPVMSDLTMVLGSISQSKARAVVI  111 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g---~-~~~~gi~v~~~l~ell~~~~~~~~~DVVI  111 (163)
                      |||||+| +|+||..+++.+.+ .++++. +.|+..  .+...+..   . ..........+.+.++..+   ...+.++
T Consensus         2 MkIGvIG-lG~MG~~ma~~L~~-~G~~V~-~~dr~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~   73 (178)
T d1pgja2           2 MDVGVVG-LGVMGANLALNIAE-KGFKVA-VFNRTY--SKSEEFMKANASAPFAGNLKAFETMEAFAASL---KKPRKAL   73 (178)
T ss_dssp             BSEEEEC-CSHHHHHHHHHHHH-TTCCEE-EECSSH--HHHHHHHHHTTTSTTGGGEEECSCHHHHHHHB---CSSCEEE
T ss_pred             CEEEEEe-ehHHHHHHHHHHHH-CCCeEE-EEECCH--HHHHHHHHcCCccccccchhhhhhhhHHHHhc---ccceEEE
Confidence            6899999 79999999999984 688876 578642  11122210   0 0011223345566655432   3556666


Q ss_pred             EccCchhHH----HHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeE
Q 031216          112 DFTDASTVY----DNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMV  158 (163)
Q Consensus       112 DfT~p~~~~----~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv  158 (163)
                      +...+....    ..+...+..|.- ++-.+..++++..++.+..++.++-
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~i-ii~~st~~~~~~~~~~~~l~~~~~~  123 (178)
T d1pgja2          74 ILVQAGAATDSTIEQLKKVFEKGDI-LVDTGNAHFKDQGRRAQQLEAAGLR  123 (178)
T ss_dssp             ECCCCSHHHHHHHHHHHHHCCTTCE-EEECCCCCHHHHHHHHHHHHTTTCE
T ss_pred             EeecCcchhhhhhhhhhhhccccce-ecccCccchhHHHHHHHHHhhccee
Confidence            555554332    333444555544 4445555566777777776666654

>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]

Probab=97.56  E-value=2.8e-05  Score=58.13  Aligned_cols=97  Identities=20%  Similarity=0.220  Sum_probs=56.3

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCC-------------------CCCCccee--CCHH
Q 031216           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDME-------------------QPLEIPVM--SDLT   95 (163)
Q Consensus        37 rV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~-------------------~~~gi~v~--~~l~   95 (163)
                      ||||.| .||+||.+.|.+.+. +++++++-|+...-+.+.-++..+                   ....+.++  .+++
T Consensus         2 kIgING-fGRIGR~~~R~~~~~-~~~ivaINd~~~~~~~~~yLlkyDS~hG~~~~~i~~~~~~l~ing~~I~~~~~~~p~   79 (169)
T d1dssg1           2 KIGING-FGRIGRLVLRAALEM-GAQVVAVNDPFIALEYMVYMFKYDSTHGMFKGEVKAEDGALVVDGKKITVFNEMKPE   79 (169)
T ss_dssp             CEEEEC-CSHHHHHHHHHHHHH-TCCEEEEECTTSCHHHHHHHHHCCTTTCCCSSCEEEETTEEEETTEEEEEECCSSGG
T ss_pred             eEEEEC-CcHHHHHHHHHHHhC-CCcEEEECCCCcCHHHHHHHHhcccccCCcCCeEEEeCCEEEECCEEEEEEecCChH
Confidence            899999 799999999998865 689999988421000111111000                   01123333  4555


Q ss_pred             HHHhcccccCCccEEEEccCchhHHHHHHHHHHcC-CcEEEeCC
Q 031216           96 MVLGSISQSKARAVVIDFTDASTVYDNVKQATAFG-MRSVVYVP  138 (163)
Q Consensus        96 ell~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G-~~vVigtt  138 (163)
                      ++-..   +..+|+|||+|=.-...+.+..-++.| +.||+-.|
T Consensus        80 ~i~W~---~~gvD~ViEcTG~f~~~~~~~~hl~~gakkViisaP  120 (169)
T d1dssg1          80 NIPWS---KAGAEYIVESTGVFTTIEKASAHFKGGAKKVIISAP  120 (169)
T ss_dssp             GCCHH---HHTCCEEEECSSSCCSHHHHGGGGTTTCSEEEESSC
T ss_pred             HCCcc---ccCCCEEEecCceEcCHHHHHHHHhcCCceEeecCC
Confidence            54331   247999999985444445555555666 44555444

>d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Zymomonas mobilis [TaxId: 542]

Probab=97.49  E-value=0.00071  Score=49.23  Aligned_cols=117  Identities=9%  Similarity=0.020  Sum_probs=73.7

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcC-CcEEEEEEecCCC------------------Ccch-hhhccCCCCCCcceeCCH
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAIDSHSV------------------GEDI-GMVCDMEQPLEIPVMSDL   94 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~-~~eLvgvid~~~~------------------g~~~-~~l~g~~~~~gi~v~~~l   94 (163)
                      |.||+|.|+||-+|+..++.+.++| .++++++...+..                  .... ..+.......++.++...
T Consensus         2 pK~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~lsa~~N~~~L~~q~~ef~Pk~v~i~d~~~~~~l~~~~~~~~~~v~~g~   81 (150)
T d1r0ka2           2 PRTVTVLGATGSIGHSTLDLIERNLDRYQVIALTANRNVKDLADAAKRTNAKRAVIADPSLYNDLKEALAGSSVEAAAGA   81 (150)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTGGGEEEEEEEESSCHHHHHHHHHHTTCSEEEESCGGGHHHHHHHTTTCSSEEEESH
T ss_pred             CcEEEEECCCcHHHHHHHHHHHcCCCCcEEEEEEeCCCHHHHHHHHHhhccccceeccHHHHHHHHHHhhhcccccccCc
Confidence            6899999999999999999999886 5999999884311                  0000 011000012345555555


Q ss_pred             HHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhh
Q 031216           95 TMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCD  153 (163)
Q Consensus        95 ~ell~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~  153 (163)
                      +.+.+ + ...++|.++....=.........|+++|+.+-+..-+-=-.....+.+.++
T Consensus        82 ~~l~~-~-~~~~~D~vv~Ai~G~~GL~~tl~ai~~gk~iaLANKEslV~ag~~~l~~~~  138 (150)
T d1r0ka2          82 DALVE-A-AMMGADWTMAAIIGCAGLKATLAAIRKGKTVALANKEDMRTPIGHTLAWPK  138 (150)
T ss_dssp             HHHHH-H-HTSCCSEEEECCCSGGGHHHHHHHHHTTSEEEECCSHCTHHHHHHHHHTTS
T ss_pred             cchhe-e-cccccceeeeecCchhHHHHHHHHHhcCCEEEEecchhhhhhhHHHHHHcC
Confidence            44322 1 125799998665556668889999999999988654321222344444443

>d1gr0a1 c.2.1.3 (A:14-200,A:312-367) Myo-inositol 1-phosphate synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Myo-inositol 1-phosphate synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.41  E-value=0.00049  Score=53.79  Aligned_cols=122  Identities=19%  Similarity=0.202  Sum_probs=80.0

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhc----------------------CCcEEEEEEe--cCCCCcchhhhccCC------
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKA----------------------RGMEVAGAID--SHSVGEDIGMVCDME------   83 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~----------------------~~~eLvgvid--~~~~g~~~~~l~g~~------   83 (163)
                      +++||+|+| -|+-.+.+++-+...                      .|+|+|+.+|  .+..|+|+.+..-..      
T Consensus         1 ~kIrVaIvG-vGNcASslvqGieyyk~~~~~~~v~Glm~~~iggY~v~DIe~VaafDVD~~KVGkdlseAi~a~pN~t~~   79 (243)
T d1gr0a1           1 TEVRVAIVG-VGNCASSLVQGVEYYYNADDTSTVPGLMHVRFGPYHVRDVKFVAAFDVDAKKVGFDLSDAIFASENNTIK   79 (243)
T ss_dssp             CCEEEEEEC-CSHHHHHHHHHHHHTTTCCTTSCCTTCSCSEETTEEGGGEEEEEEEECBTTTTTSBHHHHTTSTTCCCCC
T ss_pred             CceEEEEEc-chHHHHHHHHHHHHHhcCCCccccccceecccCCccccceEEEEEEecCccccCCcHHHHHhcCCCCcee
Confidence            369999999 599999999987621                      1569999999  456788766543110      


Q ss_pred             ----CCCCccee-----------------------CCHHHHHhcccccCCccEEEEccC---chhHHHHHHHHHHcCCcE
Q 031216           84 ----QPLEIPVM-----------------------SDLTMVLGSISQSKARAVVIDFTD---ASTVYDNVKQATAFGMRS  133 (163)
Q Consensus        84 ----~~~gi~v~-----------------------~~l~ell~~~~~~~~~DVVIDfT~---p~~~~~~~~~al~~G~~v  133 (163)
                          .+.++.|.                       .++-+.|.    +.++||+|.+-+   -++..-|+..|+++|+..
T Consensus        80 ~~d~p~~gv~V~~G~~LDg~~~~~~~~~~~~~~~~~dvv~~Lk----~~~~dVlvnylPvGse~A~~~YA~~al~Ag~aF  155 (243)
T d1gr0a1          80 IADVAPTNVIVQRGPTLDGIGKYYADTIELSDAEPVDVVQALK----EAKVDVLVSYLPVGSEEADKFYAQCAIDAGVAF  155 (243)
T ss_dssp             CSCCCCCCCBCEECCCTTSCCHHHHTTSCBCSSCCCCHHHHHH----HTTCSEEEECCCTTCHHHHHHHHHHHHHHTCEE
T ss_pred             eCCCCCCCCEEeccCCccccchhhhcccCCCCccHHHHHHHHH----hcCCCEEEEecCCCcHHHHHHHHHHHHHcCceE
Confidence                01122211                       12223333    479999998753   344567999999999999


Q ss_pred             EEeCCCCCHHHHHHHHHHhhhcCeEEcC
Q 031216          134 VVYVPHIQLETVSALSAFCDKASMVSTG  161 (163)
Q Consensus       134 Vigttg~~~e~~~~L~~~A~~~~Vv~tg  161 (163)
                      |-..|.+=..+ +++.+..++.++..-|
T Consensus       156 VN~iP~fIAsd-p~w~~kF~e~glpivG  182 (243)
T d1gr0a1         156 VNALPVFIASD-PVWAKKFTDARVPIVG  182 (243)
T ss_dssp             EECSSCCSTTS-HHHHHHHHHHTCEEEE
T ss_pred             EecccccccCC-HHHHHHHHHcCCcEEc
Confidence            99999662222 3356666666665544

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=97.40  E-value=0.0005  Score=49.24  Aligned_cols=106  Identities=13%  Similarity=0.066  Sum_probs=57.8

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc-C
Q 031216           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT-D  115 (163)
Q Consensus        37 rV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT-~  115 (163)
                      ||+++| +|+||..+++.+.+ .+..++  .++..  .+..++..   ..+ ....+.+.+.       +.|+++-.. .
T Consensus         2 kIg~IG-lG~MG~~ma~~L~~-~g~~~~--~~~~~--~~~~~~~~---~~~-~~~~~~~~~~-------~~~~~i~~~~~   64 (156)
T d2cvza2           2 KVAFIG-LGAMGYPMAGHLAR-RFPTLV--WNRTF--EKALRHQE---EFG-SEAVPLERVA-------EARVIFTCLPT   64 (156)
T ss_dssp             CEEEEC-CSTTHHHHHHHHHT-TSCEEE--ECSST--HHHHHHHH---HHC-CEECCGGGGG-------GCSEEEECCSS
T ss_pred             eEEEEe-HHHHHHHHHHHHHh-CCCEEE--EeCCH--HHHHHHHH---HcC-Cccccccccc-------ceeEEEecccc
Confidence            799999 79999999999974 565543  44321  11111110   111 1123333332       566655322 2


Q ss_pred             chhHHHHHHHHHHc--CCcEEEeCCCCCHHHHHHHHHHhhhcCeEE
Q 031216          116 ASTVYDNVKQATAF--GMRSVVYVPHIQLETVSALSAFCDKASMVS  159 (163)
Q Consensus       116 p~~~~~~~~~al~~--G~~vVigttg~~~e~~~~L~~~A~~~~Vv~  159 (163)
                      ++.+.......++.  .-.+++-++..++++..++.+.+++.++-|
T Consensus        65 ~~~v~~~~~~l~~~~~~~~~iid~sT~~p~~~~~~~~~~~~~gi~~  110 (156)
T d2cvza2          65 TREVYEVAEALYPYLREGTYWVDATSGEPEASRRLAERLREKGVTY  110 (156)
T ss_dssp             HHHHHHHHHHHTTTCCTTEEEEECSCCCHHHHHHHHHHHHTTTEEE
T ss_pred             hhhhhhhhccccccccccccccccccCCHHHHHHHHHHHHHcCCeE
Confidence            33333333332222  233455566677888888888888877654

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=97.40  E-value=8.8e-06  Score=58.24  Aligned_cols=89  Identities=8%  Similarity=0.008  Sum_probs=46.3

Q ss_pred             EEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEccCch
Q 031216           38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDAS  117 (163)
Q Consensus        38 V~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT~p~  117 (163)
                      |+++| +|+||+.+++.+.  .+.++..+++++.  ..+..+..   ..+ ..+.+++++..      ..|+||-+.+|+
T Consensus         2 IgfIG-~G~mg~~l~~~L~--~~~~~~~v~~R~~--~~~~~l~~---~~~-~~~~~~~~~~~------~~DiVil~v~d~   66 (153)
T d2i76a2           2 LNFVG-TGTLTRFFLECLK--DRYEIGYILSRSI--DRARNLAE---VYG-GKAATLEKHPE------LNGVVFVIVPDR   66 (153)
T ss_dssp             CEEES-CCHHHHHHHHTTC------CCCEECSSH--HHHHHHHH---HTC-CCCCSSCCCCC---------CEEECSCTT
T ss_pred             EEEEe-CcHHHHHHHHHHH--hCCCEEEEEeCCh--hhhcchhh---ccc-ccccchhhhhc------cCcEEEEeccch
Confidence            68999 6999999999874  3566666777643  22223321   122 23456666553      789988555555


Q ss_pred             hHHHHHHHHHHcCCcEEEeCC-CCCH
Q 031216          118 TVYDNVKQATAFGMRSVVYVP-HIQL  142 (163)
Q Consensus       118 ~~~~~~~~al~~G~~vVigtt-g~~~  142 (163)
                      ...+.+......++- |+-++ +.+.
T Consensus        67 ~i~~v~~~l~~~~~i-vi~~s~~~~~   91 (153)
T d2i76a2          67 YIKTVANHLNLGDAV-LVHCSGFLSS   91 (153)
T ss_dssp             THHHHHTTTCCSSCC-EEECCSSSCG
T ss_pred             hhhHHHhhhccccee-eeecccchhh
Confidence            444544433234544 44444 4443

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=97.40  E-value=0.00026  Score=52.80  Aligned_cols=83  Identities=18%  Similarity=0.157  Sum_probs=54.6

Q ss_pred             cccccccccccceeeeccCCCCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcce
Q 031216           11 RMHHISQNVKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV   90 (163)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v   90 (163)
                      |+++..++++.++|-..-..+.-.-.+|+|+| .|++|+.+++.+. .=++++.+ +|+...            ......
T Consensus        18 ~i~~~~~~~~~~~w~~~~~~~~l~gk~vgIiG-~G~IG~~va~~l~-~~g~~v~~-~d~~~~------------~~~~~~   82 (181)
T d1qp8a1          18 RIIQYGEKMKRGDYGRDVEIPLIQGEKVAVLG-LGEIGTRVGKILA-ALGAQVRG-FSRTPK------------EGPWRF   82 (181)
T ss_dssp             THHHHHHHHHTTCCCCCSCCCCCTTCEEEEES-CSTHHHHHHHHHH-HTTCEEEE-ECSSCC------------CSSSCC
T ss_pred             CHHHHHHHHHcCCCCCCCCCCcccCceEEEec-cccccccceeeee-cccccccc-cccccc------------ccceee
Confidence            45556667777666322122223457899999 7999999999887 45888875 464321            112234


Q ss_pred             eCCHHHHHhcccccCCccEEEEcc
Q 031216           91 MSDLTMVLGSISQSKARAVVIDFT  114 (163)
Q Consensus        91 ~~~l~ell~~~~~~~~~DVVIDfT  114 (163)
                      ++++++++.      ..|+|+...
T Consensus        83 ~~~l~ell~------~sDiv~~~~  100 (181)
T d1qp8a1          83 TNSLEEALR------EARAAVCAL  100 (181)
T ss_dssp             BSCSHHHHT------TCSEEEECC
T ss_pred             eechhhhhh------ccchhhccc
Confidence            578999885      899888654

>d1vjpa1 c.2.1.3 (A:0-209,A:317-381) Hypothetical protein TM1419 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1419
species: Thermotoga maritima [TaxId: 2336]

Probab=97.36  E-value=0.00067  Score=53.97  Aligned_cols=126  Identities=14%  Similarity=0.188  Sum_probs=79.0

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHH--------------------hcCCcEEEEEEec--CCCCcchhhhccC--------C-
Q 031216           35 NIKVIINGAVKEIGRAAVIAVT--------------------KARGMEVAGAIDS--HSVGEDIGMVCDM--------E-   83 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~--------------------~~~~~eLvgvid~--~~~g~~~~~l~g~--------~-   83 (163)
                      |+||+|+|. |..+..++.-+.                    ..+|.+++|..|.  ...|+++.+..-.        . 
T Consensus         2 mIrV~ivG~-GnvAStlv~Gl~~~k~g~~~~~G~p~~~~~~~~~~Dievvgg~DId~~kvgk~l~eai~~~~n~~~~~~~   80 (275)
T d1vjpa1           2 MVKVLILGQ-GYVASTFVAGLEKLRKGEIEPYGVPLARELPIGFEDIKIVGSYDVDRAKIGKKLSEVVKQYWNDVDSLTS   80 (275)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHHHHTTSSCCTTCTTTTCSSSCGGGEEEEEEEECBTTTTTSBHHHHHHHHCTTCCCCSS
T ss_pred             ceEEEEeec-cHHHHHHHHHHHHHHcCCCCCcCcccccccCCCCCCcEEEEEecCCcchhHHHHHHHHHhchhhhhhhhc
Confidence            799999996 999999887764                    1337799999993  3445553321100        0 


Q ss_pred             ------------------CCCCcceeCCHHHHHhcc---cccCCccEEEEccC-----ch-------------------h
Q 031216           84 ------------------QPLEIPVMSDLTMVLGSI---SQSKARAVVIDFTD-----AS-------------------T  118 (163)
Q Consensus        84 ------------------~~~gi~v~~~l~ell~~~---~~~~~~DVVIDfT~-----p~-------------------~  118 (163)
                                        ...+.....++.+.++++   .++.+.||||..++     |.                   .
T Consensus        81 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~e~v~~i~~di~~~~~~Vvvn~asTE~ylpvgs~~~~~~a~~~~~~~~i~a  160 (275)
T d1vjpa1          81 DPEIRKGVHLGSVRNLPIEAEGLEDSMTLKEAVDTLVKEWTELDPDVIVNTCTTEAFVPFGNKEDLLKAIENNDKERLTA  160 (275)
T ss_dssp             CCBCEECCCTTTTTTSSCCBCCGGGSSCHHHHHHHHHHHHHHHCCSEEEECCCCCCCCCCSSHHHHHHHHHTTCTTTCCH
T ss_pred             ccCcccceecCccccccccccccccccchHHHHHHHHHHHHhcchhheeecccccccCCCCcHHHHHHHhhccCccccCh
Confidence                              000111112222322211   13457889998532     11                   2


Q ss_pred             HHHHHHHHH-----HcCCcEEEeCCCCCHHHHHHHHHHhhhcCeEEcCC
Q 031216          119 VYDNVKQAT-----AFGMRSVVYVPHIQLETVSALSAFCDKASMVSTGS  162 (163)
Q Consensus       119 ~~~~~~~al-----~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv~tg~  162 (163)
                      ..-|+.+|+     +.|++.|-++|-+... .+.+.+++++.++.+.|.
T Consensus       161 S~~YA~AAL~~~~~~aG~~fVN~~P~~ia~-~Pal~ela~~~gvPi~Gd  208 (275)
T d1vjpa1         161 TQVYAYAAALYANKRGGAAFVNVIPTFIAN-DPAFVELAKENNLVVFGD  208 (275)
T ss_dssp             HHHHHHHHHHHHHHHTCEEEEECSSSCSTT-CHHHHHHHHHTTEEEECS
T ss_pred             HHHHHHHHHHhhhccCCceeEeccCccccC-CHHHHHHHHHcCCcEEcc
Confidence            344666776     8999999999977643 378999999999998874

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=97.32  E-value=0.00049  Score=54.01  Aligned_cols=93  Identities=18%  Similarity=0.162  Sum_probs=55.7

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCC----CCCCcceeCCHHHHHhcccccCCccEEE
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDME----QPLEIPVMSDLTMVLGSISQSKARAVVI  111 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~----~~~gi~v~~~l~ell~~~~~~~~~DVVI  111 (163)
                      |||.|+|++|.+|+.+++.+.+....++.++ |+...  ....+...+    ...++.-.+++.+...     .++|+||
T Consensus         1 MKILITG~tGfiG~~l~~~Ll~~g~~~V~~l-d~~~~--~~~~~~~~~~~~~i~~Di~~~~~~~~~~~-----~~~d~Vi   72 (342)
T d2blla1           1 MRVLILGVNGFIGNHLTERLLREDHYEVYGL-DIGSD--AISRFLNHPHFHFVEGDISIHSEWIEYHV-----KKCDVVL   72 (342)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTCEEEEE-ESCCG--GGGGGTTCTTEEEEECCTTTCSHHHHHHH-----HHCSEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCCEEEEE-eCCCc--chhhhccCCCeEEEECccCChHHHHHHHH-----hCCCccc
Confidence            5999999999999999999987776787765 53211  111221110    0111222233444333     3799999


Q ss_pred             EccCch------------------hHHHHHHHHHHcCCcEEEe
Q 031216          112 DFTDAS------------------TVYDNVKQATAFGMRSVVY  136 (163)
Q Consensus       112 DfT~p~------------------~~~~~~~~al~~G~~vVig  136 (163)
                      .+....                  .....+..+.+.++..+.-
T Consensus        73 h~a~~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~~~~~~  115 (342)
T d2blla1          73 PLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFP  115 (342)
T ss_dssp             ECBCCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCEEEEE
T ss_pred             cccccccccccccCCcccccccccccccccccccccccccccc
Confidence            875321                  1334567778888877763

>d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Escherichia coli [TaxId: 562]

Probab=97.28  E-value=0.00091  Score=48.74  Aligned_cols=103  Identities=14%  Similarity=0.058  Sum_probs=67.5

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcC-CcEEEEEEecCCCC---cchhhh-------------------ccCCCCCCccee
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAIDSHSVG---EDIGMV-------------------CDMEQPLEIPVM   91 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~-~~eLvgvid~~~~g---~~~~~l-------------------~g~~~~~gi~v~   91 (163)
                      |.||.|.|+||-+|+..++.+.++| .++++++...+...   +.+.++                   +.. ...++.++
T Consensus         1 MK~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~Lsa~~N~~~L~~q~~~f~pk~v~i~d~~~~~~l~~~l~~-~~~~~~~~   79 (151)
T d1q0qa2           1 MKQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVAGKNVTRMVEQCLEFSPRYAVMDDEASAKLLKTMLQQ-QGSRTEVL   79 (151)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCTTTEEEEEEEESSCHHHHHHHHHHHCCSEEEESSHHHHHHHHHHHHH-TTCCCEEE
T ss_pred             CCeEEEEcCCcHHHHHHHHHHHhCCCCcEEEEEEecCcHHHHHHHHHHHhhcccccccHHHHHHHHHHhhh-hccccccc
Confidence            6789999999999999999999987 58999998843110   000010                   100 12345555


Q ss_pred             CCHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeCCC
Q 031216           92 SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPH  139 (163)
Q Consensus        92 ~~l~ell~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigttg  139 (163)
                      ...+.+.+ +.+..++|.|+-.-.=....+....++++|+.+-+..-+
T Consensus        80 ~g~~~l~~-~~~~~~~D~vi~AI~G~aGL~~t~~aik~gk~iaLANKE  126 (151)
T d1q0qa2          80 SGQQAACD-MAALEDVDQVMAAIVGAAGLLPTLAAIRAGKTILLANKD  126 (151)
T ss_dssp             ESHHHHHH-HHTCTTCCEEEECCSSGGGHHHHHHHHHTTCEEEECCHC
T ss_pred             cChHHHHH-HhcCCCCCEEEEecCcccHHHHHHHHHhcCCeEEEEccH
Confidence            33333221 112368999995555556688889999999999885543

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.26  E-value=0.001  Score=52.59  Aligned_cols=34  Identities=26%  Similarity=0.333  Sum_probs=29.4

Q ss_pred             CCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEE
Q 031216           32 PQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (163)
Q Consensus        32 ~~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgv   66 (163)
                      ++..|||.|+|++|.+|+.+++.+.+ .+.++.++
T Consensus        12 ~~~nMKILVTGgsGfIGs~lv~~L~~-~g~~V~~~   45 (363)
T d2c5aa1          12 PSENLKISITGAGGFIASHIARRLKH-EGHYVIAS   45 (363)
T ss_dssp             TTSCCEEEEETTTSHHHHHHHHHHHH-TTCEEEEE
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHH-CcCEEEEE
Confidence            55678999999999999999999885 68888864

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.24  E-value=0.00066  Score=49.90  Aligned_cols=96  Identities=18%  Similarity=0.094  Sum_probs=56.9

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC---------CcchhhhccCCCCCCcceeCCHHHHHhcccccCC
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV---------GEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKA  106 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~---------g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~  106 (163)
                      |||+|+| +|.||..++..+.+ .+.++.- ..+...         .+.-..+........+..++|+++++.      +
T Consensus         1 MkI~ViG-aG~~GtalA~~la~-~g~~V~l-~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~------~   71 (180)
T d1txga2           1 MIVSILG-AGAMGSALSVPLVD-NGNEVRI-WGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLE------N   71 (180)
T ss_dssp             CEEEEES-CCHHHHHHHHHHHH-HCCEEEE-ECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHT------T
T ss_pred             CEEEEEC-CCHHHHHHHHHHHH-CCCEEEE-EEecccHHHHHHHhhhhhhhhhcchhccccccccccHHHHHh------c
Confidence            6999999 59999999999874 4566553 322100         000001100000223445688999885      8


Q ss_pred             ccEEEEccCchhHHHHHHHHHH--cCCcEEEeCCCC
Q 031216          107 RAVVIDFTDASTVYDNVKQATA--FGMRSVVYVPHI  140 (163)
Q Consensus       107 ~DVVIDfT~p~~~~~~~~~al~--~G~~vVigttg~  140 (163)
                      .|+||..+++....+.+.....  .+.++|+-+.|+
T Consensus        72 ad~Ii~avps~~~~~~~~~l~~~l~~~~ii~~tkg~  107 (180)
T d1txga2          72 AEVVLLGVSTDGVLPVMSRILPYLKDQYIVLISKGL  107 (180)
T ss_dssp             CSEEEECSCGGGHHHHHHHHTTTCCSCEEEECCCSE
T ss_pred             cchhhcccchhhhHHHHHhhccccccceecccccCc
Confidence            9999966665555555554433  456777766664

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=97.24  E-value=0.00019  Score=54.42  Aligned_cols=59  Identities=25%  Similarity=0.406  Sum_probs=42.8

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT  114 (163)
                      |||.|+|++|.+|+.+++.+. ..|.++++. |+..  .|            +.=+.++++++..    .++|+||++.
T Consensus         2 MKIlItGasGfiG~~l~~~L~-~~g~~Vi~~-~r~~--~D------------~~d~~~~~~~l~~----~~~d~vih~a   60 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLK-GKNVEVIPT-DVQD--LD------------ITNVLAVNKFFNE----KKPNVVINCA   60 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHT-TSSEEEEEE-CTTT--CC------------TTCHHHHHHHHHH----HCCSEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHH-hCCCEEEEe-echh--cc------------CCCHHHHHHHHHH----cCCCEEEeec
Confidence            789999999999999999987 578998864 4321  11            1112355677763    5899999875

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=97.21  E-value=0.00034  Score=56.19  Aligned_cols=74  Identities=18%  Similarity=0.303  Sum_probs=45.5

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCccee-------CCHHHHHhcccccCCcc
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM-------SDLTMVLGSISQSKARA  108 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~-------~~l~ell~~~~~~~~~D  108 (163)
                      |||.|+|++|.+|+.+++.|.+ .+.+++..+|+.........+.......++..+       .++++++..    .++|
T Consensus         1 MkILItG~tGfIGs~l~~~L~~-~g~~vv~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~----~~~d   75 (361)
T d1kewa_           1 MKILITGGAGFIGSAVVRHIIK-NTQDTVVNIDKLTYAGNLESLSDISESNRYNFEHADICDSAEITRIFEQ----YQPD   75 (361)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHH-HCSCEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHH----HCCS
T ss_pred             CEEEEECCCcHHHHHHHHHHHH-CCCCEEEEEeCCCccccHHHHHhhhhcCCcEEEEccCCCHHHHHHHHHh----CCCC
Confidence            5999999999999999999985 467777788843211111111111112233321       233445542    5899


Q ss_pred             EEEEcc
Q 031216          109 VVIDFT  114 (163)
Q Consensus       109 VVIDfT  114 (163)
                      +||++.
T Consensus        76 ~VihlA   81 (361)
T d1kewa_          76 AVMHLA   81 (361)
T ss_dssp             EEEECC
T ss_pred             EEEECc
Confidence            999985

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=97.21  E-value=0.0011  Score=47.40  Aligned_cols=95  Identities=15%  Similarity=0.084  Sum_probs=56.2

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC-Ccchhh-------hccCC-CCCCcceeCCHHHHHhcccccCC
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-GEDIGM-------VCDME-QPLEIPVMSDLTMVLGSISQSKA  106 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~-g~~~~~-------l~g~~-~~~gi~v~~~l~ell~~~~~~~~  106 (163)
                      .||+|+|+ |.||..++..+.+ .|.++. ++|+... -+.+.+       ..+.. ......+++++++++.      +
T Consensus         2 k~iaIiGa-G~~G~~~A~~l~~-~G~~V~-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~------~   72 (184)
T d1bg6a2           2 KTYAVLGL-GNGGHAFAAYLAL-KGQSVL-AWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVK------D   72 (184)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHH-TTCEEE-EECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHT------T
T ss_pred             CEEEEECc-cHHHHHHHHHHHH-CCCEEE-EEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhc------C
Confidence            58999995 9999999999885 688877 5564310 000000       00000 0122345688899885      8


Q ss_pred             ccEEEEccCchhHHHHHHHH---HHcCCcEEEeCCCC
Q 031216          107 RAVVIDFTDASTVYDNVKQA---TAFGMRSVVYVPHI  140 (163)
Q Consensus       107 ~DVVIDfT~p~~~~~~~~~a---l~~G~~vVigttg~  140 (163)
                      +|+||.++.+..+.+.+...   +..+.. |+..++.
T Consensus        73 aD~iii~v~~~~~~~~~~~i~~~l~~~~~-iv~~~g~  108 (184)
T d1bg6a2          73 ADVILIVVPAIHHASIAANIASYISEGQL-IILNPGA  108 (184)
T ss_dssp             CSEEEECSCGGGHHHHHHHHGGGCCTTCE-EEESSCC
T ss_pred             CCEEEEEEchhHHHHHHHHhhhccCCCCE-EEEeCCC
Confidence            99999766555555544433   334554 4545544

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=97.21  E-value=0.00035  Score=50.90  Aligned_cols=90  Identities=19%  Similarity=0.188  Sum_probs=56.6

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEc
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDf  113 (163)
                      +..||+|+|+ |.||+.+++.+.. .+..-+-++.++.  .++.++..-. ...+..++++.+.+.      ++|+||.+
T Consensus        23 ~~~~ilviGa-G~~g~~v~~~L~~-~g~~~i~v~nRt~--~ka~~l~~~~-~~~~~~~~~~~~~l~------~~Divi~a   91 (159)
T d1gpja2          23 HDKTVLVVGA-GEMGKTVAKSLVD-RGVRAVLVANRTY--ERAVELARDL-GGEAVRFDELVDHLA------RSDVVVSA   91 (159)
T ss_dssp             TTCEEEEESC-CHHHHHHHHHHHH-HCCSEEEEECSSH--HHHHHHHHHH-TCEECCGGGHHHHHH------TCSEEEEC
T ss_pred             ccCeEEEECC-CHHHHHHHHHHHh-cCCcEEEEEcCcH--HHHHHHHHhh-hcccccchhHHHHhc------cCCEEEEe
Confidence            4578999995 9999999999986 4675555666542  2222332100 112333577777775      89999977


Q ss_pred             cC-chh--HHHHHHHHHHc---CCcEE
Q 031216          114 TD-AST--VYDNVKQATAF---GMRSV  134 (163)
Q Consensus       114 T~-p~~--~~~~~~~al~~---G~~vV  134 (163)
                      |. |..  ..++++..++.   +++++
T Consensus        92 tss~~~ii~~~~i~~~~~~r~~~~~~~  118 (159)
T d1gpja2          92 TAAPHPVIHVDDVREALRKRDRRSPIL  118 (159)
T ss_dssp             CSSSSCCBCHHHHHHHHHHCSSCCCEE
T ss_pred             cCCCCccccHhhhHHHHHhcccCCCeE
Confidence            63 332  36777766653   45543

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=97.20  E-value=0.0007  Score=44.62  Aligned_cols=84  Identities=18%  Similarity=0.087  Sum_probs=50.5

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCH-HHHHhcccccCCccEEEEcc
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDL-TMVLGSISQSKARAVVIDFT  114 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l-~ell~~~~~~~~~DVVIDfT  114 (163)
                      .||+|+| .|+.|+.+++.+.+ .+.++. +.|.... .+..+.+.   ......+..+ ++.+.      .+|.|| .|
T Consensus         6 K~v~ViG-lG~sG~s~a~~L~~-~g~~v~-~~D~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~------~~d~vi-~S   71 (93)
T d2jfga1           6 KNVVIIG-LGLTGLSCVDFFLA-RGVTPR-VMDTRMT-PPGLDKLP---EAVERHTGSLNDEWLM------AADLIV-AS   71 (93)
T ss_dssp             CCEEEEC-CSHHHHHHHHHHHH-TTCCCE-EEESSSS-CTTGGGSC---TTSCEEESBCCHHHHH------HCSEEE-EC
T ss_pred             CEEEEEe-ECHHHHHHHHHHHH-CCCEEE-EeeCCcC-chhHHHHh---hccceeecccchhhhc------cCCEEE-EC
Confidence            5799999 69999999998875 578776 4564321 11112111   2122233333 33443      789888 44


Q ss_pred             --CchhHHHHHHHHHHcCCcEE
Q 031216          115 --DASTVYDNVKQATAFGMRSV  134 (163)
Q Consensus       115 --~p~~~~~~~~~al~~G~~vV  134 (163)
                        .|.. .+.+..|.++|++||
T Consensus        72 PGi~~~-~~~~~~a~~~gi~ii   92 (93)
T d2jfga1          72 PGIALA-HPSLSAAADAGIEIV   92 (93)
T ss_dssp             TTSCTT-SHHHHHHHHTTCEEE
T ss_pred             CCCCCC-CHHHHHHHHcCCCeE
Confidence              2322 467778889999964

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.12  E-value=0.0013  Score=45.53  Aligned_cols=105  Identities=14%  Similarity=0.252  Sum_probs=56.7

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcce-eC---CHHHHHhcccccCCccEEE
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MS---DLTMVLGSISQSKARAVVI  111 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v-~~---~l~ell~~~~~~~~~DVVI  111 (163)
                      |||.|+| .|++|+.+++.+. ..+.+++ ++|.++  ..+..+..   ..++.+ +.   +.+ .+.+ ..-.++|.++
T Consensus         1 M~IvI~G-~G~~G~~la~~L~-~~g~~v~-vid~d~--~~~~~~~~---~~~~~vi~Gd~~~~~-~l~~-~~i~~a~~vv   70 (132)
T d1lssa_           1 MYIIIAG-IGRVGYTLAKSLS-EKGHDIV-LIDIDK--DICKKASA---EIDALVINGDCTKIK-TLED-AGIEDADMYI   70 (132)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHH-HTTCEEE-EEESCH--HHHHHHHH---HCSSEEEESCTTSHH-HHHH-TTTTTCSEEE
T ss_pred             CEEEEEC-CCHHHHHHHHHHH-HCCCCcc-eecCCh--hhhhhhhh---hhhhhhccCcccchh-hhhh-cChhhhhhhc
Confidence            6999999 5999999999987 5678876 567432  11112111   123332 22   222 2211 0114788888


Q ss_pred             EccCchhH-HHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHH
Q 031216          112 DFTDASTV-YDNVKQATAFGMRSVVYVPHIQLETVSALSAF  151 (163)
Q Consensus       112 DfT~p~~~-~~~~~~al~~G~~vVigttg~~~e~~~~L~~~  151 (163)
                      -.|..+.. ......+.+.|.+-++... .+++..+.+.++
T Consensus        71 ~~t~~d~~N~~~~~~~k~~~~~~iI~~~-~~~~~~~~l~~~  110 (132)
T d1lssa_          71 AVTGKEEVNLMSSLLAKSYGINKTIARI-SEIEYKDVFERL  110 (132)
T ss_dssp             ECCSCHHHHHHHHHHHHHTTCCCEEEEC-SSTTHHHHHHHT
T ss_pred             ccCCcHHHHHHHHHHHHHcCCceEEEEe-cCHHHHHHHHHC
Confidence            66544433 2333455566766555443 244555555443

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

Probab=97.08  E-value=0.00031  Score=53.27  Aligned_cols=62  Identities=11%  Similarity=0.204  Sum_probs=38.2

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT  114 (163)
                      |||.|.|++|.+|+.+++.+.+. + +++++ ++...     .+     ..++.-...+++++..    .++|+||++.
T Consensus         1 MKILItG~tGfiG~~l~~~L~~~-g-~~v~~-~~~~~-----~~-----~~Dl~~~~~~~~~i~~----~~~D~Vih~A   62 (298)
T d1n2sa_           1 MNILLFGKTGQVGWELQRSLAPV-G-NLIAL-DVHSK-----EF-----CGDFSNPKGVAETVRK----LRPDVIVNAA   62 (298)
T ss_dssp             CEEEEECTTSHHHHHHHHHTTTT-S-EEEEE-CTTCS-----SS-----CCCTTCHHHHHHHHHH----HCCSEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhC-C-CEEEE-ECCCc-----cc-----cCcCCCHHHHHHHHHH----cCCCEEEEec
Confidence            68999999999999999988643 3 44433 32211     00     0111112345556653    5899999975

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=97.05  E-value=0.00054  Score=52.94  Aligned_cols=29  Identities=17%  Similarity=0.297  Sum_probs=26.2

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEE
Q 031216           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (163)
Q Consensus        37 rV~VvGa~G~mG~~i~~~i~~~~~~eLvgv   66 (163)
                      ||.|+|++|.+|+.+++.+.+ .+.++.++
T Consensus         2 KILVTGatGfIGs~lv~~Ll~-~g~~V~~i   30 (338)
T d1orra_           2 KLLITGGCGFLGSNLASFALS-QGIDLIVF   30 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHH-TTCEEEEE
T ss_pred             EEEEECCCcHHHHHHHHHHHH-CcCEEEEE
Confidence            899999999999999999985 58999874

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.02  E-value=0.0012  Score=51.63  Aligned_cols=32  Identities=19%  Similarity=0.233  Sum_probs=27.9

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvi   67 (163)
                      +.||.|+|++|.+|+.+++.+.+ .+.+++++.
T Consensus         1 kKKIlVtG~sGfiG~~lv~~L~~-~g~~V~~~d   32 (312)
T d2b69a1           1 RKRILITGGAGFVGSHLTDKLMM-DGHEVTVVD   32 (312)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHH-CcCEEEEEe
Confidence            36899999999999999999975 689999753

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=96.99  E-value=0.0015  Score=51.31  Aligned_cols=30  Identities=20%  Similarity=0.419  Sum_probs=27.0

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEE
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgv   66 (163)
                      |||.|+|++|.+|+.+++.+.+ .+.+++++
T Consensus         1 MKiLItG~tGfIG~~l~~~L~~-~g~~V~~~   30 (338)
T d1udca_           1 MRVLVTGGSGYIGSHTCVQLLQ-NGHDVIIL   30 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHH-CcCEEEEE
Confidence            6899999999999999999986 57998875

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.98  E-value=0.003  Score=47.33  Aligned_cols=95  Identities=18%  Similarity=0.082  Sum_probs=55.1

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCc-EEEEEEecCCCCcchhhhccCCCCCCcce--eCCHHHHHhcccccCCccEEE
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSHSVGEDIGMVCDMEQPLEIPV--MSDLTMVLGSISQSKARAVVI  111 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~-eLvgvid~~~~g~~~~~l~g~~~~~gi~v--~~~l~ell~~~~~~~~~DVVI  111 (163)
                      +.||.|+||+|.+|+.+++.+.+...+ ++.++..+.. ..+.....    .....+  +.+++++...   -..+|+++
T Consensus        14 ~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~-~~~~~~~~----~i~~~~~D~~~~~~~~~~---~~~~d~vi   85 (232)
T d2bkaa1          14 NKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKL-TFDEEAYK----NVNQEVVDFEKLDDYASA---FQGHDVGF   85 (232)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCC-CCCSGGGG----GCEEEECCGGGGGGGGGG---GSSCSEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChh-hhcccccc----eeeeeeeccccccccccc---cccccccc
Confidence            368999999999999999999887765 6776654321 11111110    111111  2233333322   14799998


Q ss_pred             EccCc-------h--------hHHHHHHHHHHcCCcEEEeC
Q 031216          112 DFTDA-------S--------TVYDNVKQATAFGMRSVVYV  137 (163)
Q Consensus       112 DfT~p-------~--------~~~~~~~~al~~G~~vVigt  137 (163)
                      .+...       .        .....++.|.+.|++.++-.
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~fi~~  126 (232)
T d2bkaa1          86 CCLGTTRGKAGAEGFVRVDRDYVLKSAELAKAGGCKHFNLL  126 (232)
T ss_dssp             ECCCCCHHHHHHHHHHHHHTHHHHHHHHHHHHTTCCEEEEE
T ss_pred             ccccccccccchhhhhhhcccccceeeecccccCccccccC
Confidence            75411       0        22356778889998855443

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.95  E-value=0.0048  Score=42.24  Aligned_cols=91  Identities=18%  Similarity=0.183  Sum_probs=52.2

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEc
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDf  113 (163)
                      ...||+|+| .|..||+++....+. |+++. ++|+... .++..+...   .-+--|+|.+++.+- .....+|+|. |
T Consensus        10 ~~~kigIlG-gGQL~rMla~aA~~l-G~~v~-v~d~~~~-~PA~~va~~---~i~~~~~d~~~l~~~-~~~~~~DviT-~   80 (111)
T d1kjqa2          10 AATRVMLLG-SGELGKEVAIECQRL-GVEVI-AVDRYAD-APAMHVAHR---SHVINMLDGDALRRV-VELEKPHYIV-P   80 (111)
T ss_dssp             TCCEEEEES-CSHHHHHHHHHHHTT-TCEEE-EEESSTT-CGGGGGSSE---EEECCTTCHHHHHHH-HHHHCCSEEE-E
T ss_pred             CCCEEEEEe-CCHHHHHHHHHHHHC-CCEEE-EEcCCCC-CchhhcCCe---EEECCCCCHHHHHHH-HHhhCCceEE-E
Confidence            346999999 599999999988754 89986 5675432 233433321   111225666655321 0013678865 4


Q ss_pred             cCchhHHHHHHHHHHcCCcE
Q 031216          114 TDASTVYDNVKQATAFGMRS  133 (163)
Q Consensus       114 T~p~~~~~~~~~al~~G~~v  133 (163)
                      -.-+.-.+.++.+.+.|++|
T Consensus        81 E~EnI~~~~L~~le~~g~~v  100 (111)
T d1kjqa2          81 EIEAIATDMLIQLEEEGLNV  100 (111)
T ss_dssp             CSSCSCHHHHHHHHHTTCEE
T ss_pred             EecCcCHHHHHHHHHCCCeE
Confidence            32222245555556777775

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.94  E-value=0.00026  Score=51.35  Aligned_cols=35  Identities=14%  Similarity=0.245  Sum_probs=27.6

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhc-CCcEEEEEEe
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAID   68 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~-~~~eLvgvid   68 (163)
                      .|.||.|+|++|.+|+.+++.+.+. ..+.+.+...
T Consensus         2 ~~~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R   37 (252)
T d2q46a1           2 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVR   37 (252)
T ss_dssp             SCCEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEES
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcC
Confidence            4789999999999999999999864 2356665443

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.80  E-value=0.0038  Score=46.28  Aligned_cols=104  Identities=21%  Similarity=0.193  Sum_probs=59.8

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC-------CC------cchhhhcc-CCCCCCcceeCCHHHHHhcc
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-------VG------EDIGMVCD-MEQPLEIPVMSDLTMVLGSI  101 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~-------~g------~~~~~l~g-~~~~~gi~v~~~l~ell~~~  101 (163)
                      |||+|+| +|++|..++..+. ..+.++. ++|...       .|      ....+++. .........++|+++++.  
T Consensus         1 MkI~ViG-lG~vGl~~a~~la-~~g~~V~-g~D~n~~~i~~ln~g~~p~~e~~~~~~l~~~~~~~~~~~~~~~~~~i~--   75 (202)
T d1mv8a2           1 MRISIFG-LGYVGAVCAGCLS-ARGHEVI-GVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVL--   75 (202)
T ss_dssp             CEEEEEC-CSTTHHHHHHHHH-HTTCEEE-EECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHH--
T ss_pred             CEEEEEC-CCHhHHHHHHHHH-hCCCcEE-EEeCCHHHHHHhcccCCcccchhhhhhhhhhhcccccccCCCHHHHHh--
Confidence            6899999 6999999888876 5789987 577421       01      01111110 001223456788888875  


Q ss_pred             cccCCccEEEEcc-Cch------------hHHHHHHHHHH---cCCcEEEeCC---CCCHHHHHHH
Q 031216          102 SQSKARAVVIDFT-DAS------------TVYDNVKQATA---FGMRSVVYVP---HIQLETVSAL  148 (163)
Q Consensus       102 ~~~~~~DVVIDfT-~p~------------~~~~~~~~al~---~G~~vVigtt---g~~~e~~~~L  148 (163)
                          +.|+++.+. +|.            .+.+.+...++   .+.-+|+.+|   |.+.+....+
T Consensus        76 ----~~d~i~i~VpTP~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~liii~STv~pGtt~~~~~~~  137 (202)
T d1mv8a2          76 ----DSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPL  137 (202)
T ss_dssp             ----TCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHH
T ss_pred             ----hCCEEEEecCccccccccccchhhhhhhhhhhheeecccCCcceeeccccCCcchhhhhhhh
Confidence                899887543 231            22333333333   3445777676   5665554443

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=96.79  E-value=0.0024  Score=45.80  Aligned_cols=71  Identities=13%  Similarity=0.130  Sum_probs=41.5

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEccC
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT~  115 (163)
                      =+|+|+|+ |.+|...++.+. .-+.+.++ +++...-.+...-+|.   ..+.-+.+.+.....   ...+|++||++-
T Consensus        32 ~~VlI~Ga-G~vG~~a~qlak-~~Ga~~i~-~~~~~~~~~~a~~lGa---d~~i~~~~~~~~~~~---~~~~D~vid~~g  102 (168)
T d1uufa2          32 KKVGVVGI-GGLGHMGIKLAH-AMGAHVVA-FTTSEAKREAAKALGA---DEVVNSRNADEMAAH---LKSFDFILNTVA  102 (168)
T ss_dssp             CEEEEECC-SHHHHHHHHHHH-HTTCEEEE-EESSGGGHHHHHHHTC---SEEEETTCHHHHHTT---TTCEEEEEECCS
T ss_pred             CEEEEecc-chHHHHHHHHhh-cccccchh-hccchhHHHHHhccCC---cEEEECchhhHHHHh---cCCCceeeeeee
Confidence            46999995 999998887775 56899885 5533221222222321   112223333333321   257999999874

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=96.71  E-value=0.00093  Score=49.52  Aligned_cols=73  Identities=11%  Similarity=0.112  Sum_probs=43.3

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhc------CCcEEEEEEecCCC-----Ccc--hhhhccCCCCCCcceeCCHHHHHhc
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKA------RGMEVAGAIDSHSV-----GED--IGMVCDMEQPLEIPVMSDLTMVLGS  100 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~------~~~eLvgvid~~~~-----g~~--~~~l~g~~~~~gi~v~~~l~ell~~  100 (163)
                      +++||.|+||+|.+|..++-.+..-      ..++|. .+|....     |..  ..+.. .+....+.++++..+.+. 
T Consensus        23 ~~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~-L~di~~~~~~l~g~~mdl~d~a-~~~~~~~~~~~~~~~~~~-   99 (175)
T d7mdha1          23 KLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALK-LLGSERSFQALEGVAMELEDSL-YPLLREVSIGIDPYEVFE-   99 (175)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEE-EECCGGGHHHHHHHHHHHHTTT-CTTEEEEEEESCHHHHTT-
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEE-EecCccccchhcchhhhhcccc-cccccCccccccchhhcc-
Confidence            4689999999999999998877642      122333 4553211     111  11111 000123456788888885 


Q ss_pred             ccccCCccEEEEcc
Q 031216          101 ISQSKARAVVIDFT  114 (163)
Q Consensus       101 ~~~~~~~DVVIDfT  114 (163)
                           +.|+||...
T Consensus       100 -----~aDvVvi~a  108 (175)
T d7mdha1         100 -----DVDWALLIG  108 (175)
T ss_dssp             -----TCSEEEECC
T ss_pred             -----CCceEEEee
Confidence                 999988544

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=96.55  E-value=0.0039  Score=46.47  Aligned_cols=34  Identities=24%  Similarity=0.249  Sum_probs=29.4

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid   68 (163)
                      ++.||.|+||+|.+|+.+++.+.+ .|.++.++..
T Consensus         2 ~kkKILVtGatG~iG~~l~~~L~~-~G~~V~~l~R   35 (307)
T d1qyca_           2 SRSRILLIGATGYIGRHVAKASLD-LGHPTFLLVR   35 (307)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHH-TTCCEEEECC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHH-CCCeEEEEEC
Confidence            468999999999999999999985 5899987664

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.53  E-value=0.0024  Score=47.48  Aligned_cols=32  Identities=22%  Similarity=0.308  Sum_probs=26.6

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~   70 (163)
                      -||+|+|+ |.||+.++..+. ..|++++ ++|++
T Consensus         5 kkvaViGa-G~mG~~iA~~~a-~~G~~V~-l~D~~   36 (192)
T d1f0ya2           5 KHVTVIGG-GLMGAGIAQVAA-ATGHTVV-LVDQT   36 (192)
T ss_dssp             CEEEEECC-SHHHHHHHHHHH-HTTCEEE-EECSC
T ss_pred             EEEEEECc-CHHHHHHHHHHH-hCCCcEE-EEECC
Confidence            48999995 999999998876 5799977 67753

>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.52  E-value=0.0081  Score=46.38  Aligned_cols=115  Identities=14%  Similarity=0.078  Sum_probs=74.4

Q ss_pred             CCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhhccCC-------CCCCcceeCCHHHHHhc
Q 031216           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMVCDME-------QPLEIPVMSDLTMVLGS  100 (163)
Q Consensus        33 ~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~-----~~g~~~~~l~g~~-------~~~gi~v~~~l~ell~~  100 (163)
                      -+..+|+|-| .|++|..+++.+.+.-+..++++.|+.     +.|.|+.++....       ...+... -+.++++. 
T Consensus        30 l~g~~v~IqG-fGnVG~~~a~~L~~~~G~kvv~vsD~~g~i~~~~G~d~~~l~~~~~~~~~~~~~~~~~~-~~~~~i~~-  106 (239)
T d1gtma1          30 LKGKTIAIQG-YGNAGYYLAKIMSEDFGMKVVAVSDSKGGIYNPDGLNADEVLKWKNEHGSVKDFPGATN-ITNEELLE-  106 (239)
T ss_dssp             STTCEEEEEC-CSHHHHHHHHHHHHTTCCEEEEEECSSCEEEEEEEECHHHHHHHHHHHSSSTTCTTSEE-ECHHHHHH-
T ss_pred             cCCCEEEEEC-CCHHHHHHHHHHHHhcCcceeeccccccceecCCcCCHHHHHHHHHhccccccCCCCee-eccccccc-
Confidence            3457899999 799999999988767799999999953     2344443332110       0112222 36688887 


Q ss_pred             ccccCCccEEEEccCchhH-HHHHHHHHHcCCcEEEeCC--CCCHHHHHHHHHHhhhcCeEEcC
Q 031216          101 ISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMVSTG  161 (163)
Q Consensus       101 ~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigtt--g~~~e~~~~L~~~A~~~~Vv~tg  161 (163)
                          .++|+++-+...... .+++.   +-+..+|+|-.  .++++..+    +-.+.+|++.+
T Consensus       107 ----~~~DIl~PcA~~~~I~~~~a~---~i~ak~I~e~AN~p~t~ea~~----~L~~rgI~~iP  159 (239)
T d1gtma1         107 ----LEVDVLAPAAIEEVITKKNAD---NIKAKIVAEVANGPVTPEADE----ILFEKGILQIP  159 (239)
T ss_dssp             ----SCCSEEEECSCSCCBCTTGGG---GCCCSEEECCSSSCBCHHHHH----HHHHTTCEEEC
T ss_pred             ----ccccEEeeccccccccHHHHH---hccccEEEecCCCCCCHHHHH----HHHHCCCEEec
Confidence                699999977755443 33333   45788888776  45665433    33456787754

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.52  E-value=0.004  Score=45.51  Aligned_cols=89  Identities=12%  Similarity=0.128  Sum_probs=52.2

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCc-EEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEc
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~-eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDf  113 (163)
                      +.||.|+||+|.+|+.+++.+.+.+.. ++... .++.. .+...+        -....++++....+  ...+|+||.+
T Consensus         2 ~KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~-~r~~~-~~~~~~--------~~~~~d~~~~~~~~--~~~~d~vi~~   69 (212)
T d2a35a1           2 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAP-ARKAL-AEHPRL--------DNPVGPLAELLPQL--DGSIDTAFCC   69 (212)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHCTTCCEEECC-BSSCC-CCCTTE--------ECCBSCHHHHGGGC--CSCCSEEEEC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCeEEEEEE-eCCch-hhcccc--------cccccchhhhhhcc--ccchheeeee
Confidence            469999999999999999999888775 44433 33211 010011        01234555555432  2467998875


Q ss_pred             c-Cc---------------hhHHHHHHHHHHcCCcEEE
Q 031216          114 T-DA---------------STVYDNVKQATAFGMRSVV  135 (163)
Q Consensus       114 T-~p---------------~~~~~~~~~al~~G~~vVi  135 (163)
                      . ..               ......+..|.+.++.-++
T Consensus        70 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~~i  107 (212)
T d2a35a1          70 LGTTIKEAGSEEAFRAVDFDLPLAVGKRALEMGARHYL  107 (212)
T ss_dssp             CCCCHHHHSSHHHHHHHHTHHHHHHHHHHHHTTCCEEE
T ss_pred             eeeeccccccccccccchhhhhhhcccccccccccccc
Confidence            3 11               1123456777888865443

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=96.45  E-value=0.0066  Score=46.91  Aligned_cols=114  Identities=14%  Similarity=0.125  Sum_probs=73.8

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhhccCCC------------CCCcceeCCHHH
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMVCDMEQ------------PLEIPVMSDLTM   96 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~-----~~g~~~~~l~g~~~------------~~gi~v~~~l~e   96 (163)
                      +-.||+|-| .|++|+..++.+. ..|.+++++.|+.     ..|-|+..+.....            ..+.....+.++
T Consensus        30 ~g~~v~IqG-fGnVG~~~a~~L~-~~Gakvv~vsD~~g~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (242)
T d1v9la1          30 EGKTVAIQG-MGNVGRWTAYWLE-KMGAKVIAVSDINGVAYRKEGLNVELIQKNKGLTGPALVELFTTKDNAEFVKNPDA  107 (242)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHH-TTTCEEEEEECSSCEEECTTCCCTHHHHHTTTSCHHHHHHHHHHTSCCCCCSSTTG
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHH-HcCCeEEEeecccccccccccccHHHHHHHhhcchhhHHHhhhhccCceEeeCcch
Confidence            347999999 7999999999987 5699999999842     34555444332110            122333455677


Q ss_pred             HHhcccccCCccEEEEccCchhH-HHHHHHHHHcCCcEEEeCC--CCCHHHHHHHHHHhhhcCeEEcC
Q 031216           97 VLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMVSTG  161 (163)
Q Consensus        97 ll~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigtt--g~~~e~~~~L~~~A~~~~Vv~tg  161 (163)
                      ++.     .++|+++-+...... .+.+.   +-+.++|+|-.  .++++..+.    -++.+|++-+
T Consensus       108 i~~-----~~~DIliPcA~~~~I~~~~a~---~i~ak~IvegAN~p~t~~a~~~----L~~rgI~~~P  163 (242)
T d1v9la1         108 IFK-----LDVDIFVPAAIENVIRGDNAG---LVKARLVVEGANGPTTPEAERI----LYERGVVVVP  163 (242)
T ss_dssp             GGG-----CCCSEEEECSCSSCBCTTTTT---TCCCSEEECCSSSCBCHHHHHH----HHTTTCEEEC
T ss_pred             hcc-----ccccEEeecchhccccHHHHH---hcccCEEEecCCCCCChhHHHH----HHhCCeEEeC
Confidence            776     599999977755443 33333   45678888776  356655433    3456777654

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.44  E-value=0.0035  Score=44.92  Aligned_cols=97  Identities=18%  Similarity=0.117  Sum_probs=53.8

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcce--eCCHHHHHhccc--ccCCccEEEE
Q 031216           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV--MSDLTMVLGSIS--QSKARAVVID  112 (163)
Q Consensus        37 rV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v--~~~l~ell~~~~--~~~~~DVVID  112 (163)
                      +|+|+|+ |.+|...+..+. .-+.+-+-++|+...-.+...-+|..   .+..  .+++++....+.  ....+|++||
T Consensus        29 ~VlI~G~-G~iG~~~~~~a~-~~G~~~Vi~~d~~~~rl~~a~~~Ga~---~~~~~~~~~~~~~~~~~~~~~g~g~Dvvid  103 (171)
T d1pl8a2          29 KVLVCGA-GPIGMVTLLVAK-AMGAAQVVVTDLSATRLSKAKEIGAD---LVLQISKESPQEIARKVEGQLGCKPEVTIE  103 (171)
T ss_dssp             EEEEECC-SHHHHHHHHHHH-HTTCSEEEEEESCHHHHHHHHHTTCS---EEEECSSCCHHHHHHHHHHHHTSCCSEEEE
T ss_pred             EEEEECC-CccHHHHHHHHH-HcCCceEEeccCCHHHHHHHHHhCCc---ccccccccccccccccccccCCCCceEEEe
Confidence            6999995 999998888776 56774444567432111112212211   1111  134443322110  1247999999


Q ss_pred             ccCchhHHHHHHHHHHcC-CcEEEeCC
Q 031216          113 FTDASTVYDNVKQATAFG-MRSVVYVP  138 (163)
Q Consensus       113 fT~p~~~~~~~~~al~~G-~~vVigtt  138 (163)
                      ++-.+...+.+..+++.| .-+++|.+
T Consensus       104 ~~G~~~~~~~a~~~~~~gG~iv~~G~~  130 (171)
T d1pl8a2         104 CTGAEASIQAGIYATRSGGTLVLVGLG  130 (171)
T ss_dssp             CSCCHHHHHHHHHHSCTTCEEEECSCC
T ss_pred             ccCCchhHHHHHHHhcCCCEEEEEecC
Confidence            997666666666565555 44556655

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=96.41  E-value=0.003  Score=46.10  Aligned_cols=101  Identities=15%  Similarity=0.110  Sum_probs=58.3

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeC-CHHHHHhcccccCCccEEEEcc
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS-DLTMVLGSISQSKARAVVIDFT  114 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~-~l~ell~~~~~~~~~DVVIDfT  114 (163)
                      =+|+|+| .|.+|...+..+. .-+..-+.++|+...-.+..+-+|...-.+..-.+ ..++.... .....+|++||++
T Consensus        30 ~~VlV~G-~G~iGl~a~~~ak-~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~-~~~~G~d~vie~~  106 (174)
T d1e3ia2          30 STCAVFG-LGCVGLSAIIGCK-IAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITE-LTAGGVDYSLDCA  106 (174)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHH-HTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHH-HHTSCBSEEEESS
T ss_pred             CEEEEEC-CChHHHHHHHHHH-HhCCceeeeeccchHHHHHHHHhCCCcccCCccchhhhhhhHhh-hhcCCCcEEEEec
Confidence            4699999 5999998888776 56777676778543212233333321000101111 12221110 0135899999999


Q ss_pred             CchhHHHHHHHHHHc--CCcEEEeCCC
Q 031216          115 DASTVYDNVKQATAF--GMRSVVYVPH  139 (163)
Q Consensus       115 ~p~~~~~~~~~al~~--G~~vVigttg  139 (163)
                      -.+...+.+..+++.  |.-+++|.++
T Consensus       107 G~~~~~~~a~~~~~~g~G~~v~vG~~~  133 (174)
T d1e3ia2         107 GTAQTLKAAVDCTVLGWGSCTVVGAKV  133 (174)
T ss_dssp             CCHHHHHHHHHTBCTTTCEEEECCCSS
T ss_pred             ccchHHHHHHHHhhcCCeEEEecCCCC
Confidence            666666666666543  6888887763

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=96.33  E-value=0.0014  Score=47.82  Aligned_cols=98  Identities=15%  Similarity=0.143  Sum_probs=54.2

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCccee--CCHHHHHhcccccCCccEEEEcc
Q 031216           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAVVIDFT  114 (163)
Q Consensus        37 rV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~--~~l~ell~~~~~~~~~DVVIDfT  114 (163)
                      +|+|+|+ |.+|...++.+. .-+.+-+-++|+...-.+...-+|..   .+.-+  +++.+.+.++.....+|++||++
T Consensus        30 ~VlI~Ga-G~vGl~~~q~ak-~~Ga~~Vi~~d~~~~r~~~a~~lGa~---~~i~~~~~~~~~~v~~~t~g~G~D~vid~~  104 (174)
T d1jqba2          30 SVVVIGI-GAVGLMGIAGAK-LRGAGRIIGVGSRPICVEAAKFYGAT---DILNYKNGHIEDQVMKLTNGKGVDRVIMAG  104 (174)
T ss_dssp             CEEEECC-SHHHHHHHHHHH-TTTCSCEEEECCCHHHHHHHHHHTCS---EEECGGGSCHHHHHHHHTTTSCEEEEEECS
T ss_pred             EEEEEcC-Ccchhhhhhhhh-cccccccccccchhhhHHHHHhhCcc---ccccccchhHHHHHHHHhhccCcceEEEcc
Confidence            5999995 999999888876 66775455677532111222222211   11111  33444333222234699999998


Q ss_pred             CchhH-HHHHHHHHHcCCcEEEeCCC
Q 031216          115 DASTV-YDNVKQATAFGMRSVVYVPH  139 (163)
Q Consensus       115 ~p~~~-~~~~~~al~~G~~vVigttg  139 (163)
                      -.... ...+..+...|.-+++|.++
T Consensus       105 g~~~~~~~a~~~~~~~G~iv~~G~~~  130 (174)
T d1jqba2         105 GGSETLSQAVKMVKPGGIISNINYHG  130 (174)
T ss_dssp             SCTTHHHHHHHHEEEEEEEEECCCCC
T ss_pred             CCHHHHHHHHHHHhcCCEEEEEeecC
Confidence            54444 44445555556666666543

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=96.27  E-value=0.0045  Score=46.22  Aligned_cols=64  Identities=20%  Similarity=0.181  Sum_probs=45.0

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT  114 (163)
                      -.+|||+| +|++|+.+++.+. .=|+++.+ +|+... .+...      ..++..++++++++.      ..|+|+...
T Consensus        49 gktvgIiG-~G~IG~~va~~l~-~fg~~v~~-~d~~~~-~~~~~------~~~~~~~~~l~~ll~------~sD~i~~~~  112 (193)
T d1mx3a1          49 GETLGIIG-LGRVGQAVALRAK-AFGFNVLF-YDPYLS-DGVER------ALGLQRVSTLQDLLF------HSDCVTLHC  112 (193)
T ss_dssp             TCEEEEEC-CSHHHHHHHHHHH-TTTCEEEE-ECTTSC-TTHHH------HHTCEECSSHHHHHH------HCSEEEECC
T ss_pred             CceEEEec-cccccccceeeee-ccccceee-ccCccc-ccchh------hhccccccchhhccc------cCCEEEEee
Confidence            36899999 7999999999987 45899885 564321 11111      123445679999996      799988554

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=96.26  E-value=0.0094  Score=43.90  Aligned_cols=62  Identities=23%  Similarity=0.087  Sum_probs=43.1

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEc
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDf  113 (163)
                      .-.+|+|+| +|++|+.+++.+. .-++++.+ .|+.....          .....-+.++++++.      ..|+|+..
T Consensus        43 ~~~~vgiiG-~G~IG~~va~~l~-~fg~~v~~-~d~~~~~~----------~~~~~~~~~l~ell~------~sDii~i~  103 (188)
T d1sc6a1          43 RGKKLGIIG-YGHIGTQLGILAE-SLGMYVYF-YDIENKLP----------LGNATQVQHLSDLLN------MSDVVSLH  103 (188)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHH-HTTCEEEE-ECSSCCCC----------CTTCEECSCHHHHHH------HCSEEEEC
T ss_pred             cceEEEEee-cccchhhhhhhcc-cccceEee-ccccccch----------hhhhhhhhhHHHHHh------hccceeec
Confidence            347999999 7999999999876 56899875 45422100          112233578999996      78998854


Q ss_pred             c
Q 031216          114 T  114 (163)
Q Consensus       114 T  114 (163)
                      .
T Consensus       104 ~  104 (188)
T d1sc6a1         104 V  104 (188)
T ss_dssp             C
T ss_pred             c
Confidence            3

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=96.20  E-value=0.0094  Score=46.49  Aligned_cols=117  Identities=11%  Similarity=0.121  Sum_probs=76.6

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec-----CCCCcchhhhccCC------CC---------CCcceeCC
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-----HSVGEDIGMVCDME------QP---------LEIPVMSD   93 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~-----~~~g~~~~~l~g~~------~~---------~gi~v~~~   93 (163)
                      +..||+|-| .|++|+..++.+. ..|..++++.|+     .+.|-|..++....      ..         .+. .+-+
T Consensus        35 ~g~~v~IQG-fGnVG~~~a~~L~-e~GakvvavsD~~G~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  111 (255)
T d1bgva1          35 VGKTVALAG-FGNVAWGAAKKLA-ELGAKAVTLSGPDGYIYDPEGITTEEKINYMLEMRASGRNKVQDYADKFGV-QFFP  111 (255)
T ss_dssp             TTCEEEECC-SSHHHHHHHHHHH-HHTCEEEEEEETTEEEECTTCSCSHHHHHHHHHHHHHCCCCTHHHHHHHTC-EEEE
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHH-HcCCeEEEEecCCceEecCCCCCHHHHHHHHHHHhhhcCcchhhhhhhcCc-eeec
Confidence            346899999 7999999999987 469999999994     34565554432210      00         011 1123


Q ss_pred             HHHHHhcccccCCccEEEEccCchhH-HHHHHHHHHcCCcEEEeCC--CCCHHHHHHHHHHhhhcCeEEcC
Q 031216           94 LTMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMVSTG  161 (163)
Q Consensus        94 l~ell~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigtt--g~~~e~~~~L~~~A~~~~Vv~tg  161 (163)
                      .++++.     .++|+++=+...... .+++......|+.+|+|-.  .++++..   ..+.++.+|++.+
T Consensus       112 ~~~~~~-----~~~DiliPcA~~~~I~~~~a~~l~a~~ck~I~EgAN~p~t~ea~---~~ll~~~gI~vvP  174 (255)
T d1bgva1         112 GEKPWG-----QKVDIIMPCATQNDVDLEQAKKIVANNVKYYIEVANMPTTNEAL---RFLMQQPNMVVAP  174 (255)
T ss_dssp             TCCGGG-----SCCSEEECCSCTTCBCHHHHHHHHHTTCCEEECCSSSCBCHHHH---HHHHHCTTCEEEC
T ss_pred             hhhccc-----ccccEEeeccccccccHHHHHhhhhcCceEEecCCCCCcchHHH---HHHHHhcCCEEeh
Confidence            445665     589999855554444 6788888888999999876  3555542   2345567777643

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.20  E-value=0.029  Score=42.94  Aligned_cols=114  Identities=13%  Similarity=0.140  Sum_probs=73.9

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhhccCC-------CCCCcceeCCHHHHHhcc
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMVCDME-------QPLEIPVMSDLTMVLGSI  101 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~-----~~g~~~~~l~g~~-------~~~gi~v~~~l~ell~~~  101 (163)
                      +..||+|-| .|++|+.+++.+.+.-+..++++.|+.     ..|-|..++....       ...+. -+-+.++++.  
T Consensus        30 ~g~~vaIqG-~GnVG~~~a~~L~~e~Ga~vv~vsd~~G~i~~~~Gld~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~--  105 (234)
T d1b26a1          30 KKATVAVQG-FGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKG-ERITNEELLE--  105 (234)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHHHCCEEEEEEETTEEEECTTCCCHHHHHHHHHHSSCSTTCSSC-EEECHHHHHT--
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHhcCCceEEeecCCCcEEeccccchHHHHHHHHhhcceeccccc-eeeccccccc--
Confidence            457899999 799999999988766799999999843     4455554442211       01111 1236678886  


Q ss_pred             cccCCccEEEEccCchhH-HHHHHHHHHcCCcEEEeCC--CCCHHHHHHHHHHhhhcCeEEcC
Q 031216          102 SQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMVSTG  161 (163)
Q Consensus       102 ~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigtt--g~~~e~~~~L~~~A~~~~Vv~tg  161 (163)
                         .++|+++=+...... .+++.   +-..++|+|-.  .++++..+.    -.+.+|++.+
T Consensus       106 ---~~~DI~~PcA~~~~I~~~~a~---~l~~~~I~e~AN~p~t~~a~~~----L~~rgI~~~P  158 (234)
T d1b26a1         106 ---LDVDILVPAALEGAIHAGNAE---RIKAKAVVEGANGPTTPEADEI----LSRRGILVVP  158 (234)
T ss_dssp             ---SCCSEEEECSCTTCBCHHHHT---TCCCSEEECCSSSCBCHHHHHH----HHHTTCEEEC
T ss_pred             ---cccceeecchhcccccHHHHH---HhhhceEeecCCCCCCHHHHHH----HHHCCeEEec
Confidence               599999966655554 34443   34578888776  456654333    3456777754

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=96.20  E-value=0.018  Score=44.85  Aligned_cols=36  Identities=19%  Similarity=0.287  Sum_probs=31.0

Q ss_pred             CCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (163)
Q Consensus        33 ~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~   69 (163)
                      |.+.+|+|+|++|.+|+.+++.+.+ .+.++.+++.+
T Consensus         1 ~~kktIlVtGatG~iG~~lv~~Ll~-~G~~V~~l~R~   36 (350)
T d1xgka_           1 QQKKTIAVVGATGRQGASLIRVAAA-VGHHVRAQVHS   36 (350)
T ss_dssp             CCCCCEEEESTTSHHHHHHHHHHHH-TTCCEEEEESC
T ss_pred             CCCCEEEEECCChHHHHHHHHHHHh-CCCeEEEEECC
Confidence            3567899999999999999999985 58999988764

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=96.19  E-value=0.022  Score=38.76  Aligned_cols=30  Identities=27%  Similarity=0.398  Sum_probs=24.9

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (163)
Q Consensus        37 rV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~   69 (163)
                      |+.|+| +|++|+.+++.+. ..+.+++ ++|.
T Consensus         2 ~~iIiG-~G~~G~~la~~L~-~~g~~vv-vid~   31 (134)
T d2hmva1           2 QFAVIG-LGRFGGSIVKELH-RMGHEVL-AVDI   31 (134)
T ss_dssp             CEEEEC-CSHHHHHHHHHHH-HTTCCCE-EEES
T ss_pred             EEEEEC-CCHHHHHHHHHHH-HCCCeEE-EecC
Confidence            689999 6999999999987 4678877 4674

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=96.18  E-value=0.01  Score=44.56  Aligned_cols=35  Identities=23%  Similarity=0.226  Sum_probs=29.9

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~   69 (163)
                      ++.||.|+|++|.+|+.+++.+.+ .|.++.++.++
T Consensus         2 ~k~KILVtGatG~iG~~l~~~L~~-~G~~V~~~~R~   36 (312)
T d1qyda_           2 KKSRVLIVGGTGYIGKRIVNASIS-LGHPTYVLFRP   36 (312)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHH-TTCCEEEECCS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHh-CCCEEEEEECC
Confidence            467899999999999999999885 57999877653

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=96.16  E-value=0.0052  Score=45.96  Aligned_cols=85  Identities=15%  Similarity=0.127  Sum_probs=51.6

Q ss_pred             cccccccccccceeeeccCCCCC--CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCc
Q 031216           11 RMHHISQNVKAKRFISCSTNPPQ--SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI   88 (163)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~--~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi   88 (163)
                      +++...++++.+.|=-.....+.  ...+|+|+| +|++|+.+++.+. .=++++.+ +|+.....   .      ... 
T Consensus        19 ~~~~~~~~~~~g~w~~~~~~~~~~l~~ktvgIiG-~G~IG~~va~~l~-~fg~~v~~-~d~~~~~~---~------~~~-   85 (199)
T d1dxya1          19 NMGKVQAQLQAGDYEKAGTFIGKELGQQTVGVMG-TGHIGQVAIKLFK-GFGAKVIA-YDPYPMKG---D------HPD-   85 (199)
T ss_dssp             THHHHHHHHHTTCHHHHTCCCCCCGGGSEEEEEC-CSHHHHHHHHHHH-HTTCEEEE-ECSSCCSS---C------CTT-
T ss_pred             CHHHHHHHHHhCCCCcccCcccccccceeeeeee-ccccccccccccc-ccceeeec-cCCccchh---h------hcc-
Confidence            34445556666665321111111  236899999 7999999999987 45899874 56432100   0      111 


Q ss_pred             ceeCCHHHHHhcccccCCccEEEEcc
Q 031216           89 PVMSDLTMVLGSISQSKARAVVIDFT  114 (163)
Q Consensus        89 ~v~~~l~ell~~~~~~~~~DVVIDfT  114 (163)
                      .-+.++++++.      ..|+|+...
T Consensus        86 ~~~~~l~~l~~------~~D~v~~~~  105 (199)
T d1dxya1          86 FDYVSLEDLFK------QSDVIDLHV  105 (199)
T ss_dssp             CEECCHHHHHH------HCSEEEECC
T ss_pred             hhHHHHHHHHH------hcccceeee
Confidence            12468999886      789877554

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=96.11  E-value=0.014  Score=45.49  Aligned_cols=33  Identities=24%  Similarity=0.271  Sum_probs=27.0

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhc-CCcEEEEEEe
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAID   68 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~-~~~eLvgvid   68 (163)
                      |+||.|+|++|.+|+.+++.+.+. .++.+++ +|
T Consensus         2 ~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~-~d   35 (346)
T d1oc2a_           2 FKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTV-LD   35 (346)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHHCTTCEEEE-EE
T ss_pred             cCEEEEeCCCcHHHHHHHHHHHHCCCCeEEEE-Ee
Confidence            789999999999999999999765 3456664 45

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=96.11  E-value=0.0036  Score=48.10  Aligned_cols=61  Identities=15%  Similarity=0.093  Sum_probs=39.2

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT  114 (163)
                      +.||.|+|++|.+|+.+++.|.+. +.+.+. ++...             +.++.-...+++++..    ..+|+|+...
T Consensus         2 kkkIlITG~tGfiG~~l~~~L~~~-g~~vi~-~~~~~-------------~~~~~~~~~~~~~~~~----~~~d~v~~~a   62 (315)
T d1e6ua_           2 KQRVFIAGHRGMVGSAIRRQLEQR-GDVELV-LRTRD-------------ELNLLDSRAVHDFFAS----ERIDQVYLAA   62 (315)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTC-TTEEEE-CCCTT-------------TCCTTCHHHHHHHHHH----HCCSEEEECC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHC-cCEEEE-ecCch-------------hccccCHHHHHHHHhh----cCCCEEEEcc
Confidence            469999999999999999999864 455443 33221             1111112345556553    5899988754

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=96.09  E-value=0.006  Score=45.40  Aligned_cols=65  Identities=17%  Similarity=0.166  Sum_probs=44.3

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT  114 (163)
                      -.+|||+| .|++|+.+++.+. .=++++.+ +|+.....+...      ......++++++++.      ..|+|+...
T Consensus        47 g~tvgIiG-~G~IG~~va~~l~-~fg~~v~~-~d~~~~~~~~~~------~~~~~~~~~l~~ll~------~sD~v~l~~  111 (191)
T d1gdha1          47 NKTLGIYG-FGSIGQALAKRAQ-GFDMDIDY-FDTHRASSSDEA------SYQATFHDSLDSLLS------VSQFFSLNA  111 (191)
T ss_dssp             TCEEEEEC-CSHHHHHHHHHHH-TTTCEEEE-ECSSCCCHHHHH------HHTCEECSSHHHHHH------HCSEEEECC
T ss_pred             ccceEEee-cccchHHHHHHHH-hhcccccc-ccccccccchhh------cccccccCCHHHHHh------hCCeEEecC
Confidence            47899999 7999999999876 56888774 564322111111      112334578999996      789988654

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=96.09  E-value=0.0082  Score=39.56  Aligned_cols=85  Identities=20%  Similarity=0.166  Sum_probs=54.6

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc-
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT-  114 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT-  114 (163)
                      +||=.+|. |++|-.-+..+....|.++.| .|... ......|    +..|++++...+...-     .++|+|| .| 
T Consensus         2 ~~ihfiGI-gG~GMs~LA~~L~~~G~~VsG-SD~~~-~~~t~~L----~~~Gi~i~~gh~~~~i-----~~~d~vV-~Ss   68 (89)
T d1j6ua1           2 MKIHFVGI-GGIGMSAVALHEFSNGNDVYG-SNIEE-TERTAYL----RKLGIPIFVPHSADNW-----YDPDLVI-KTP   68 (89)
T ss_dssp             CEEEEETT-TSHHHHHHHHHHHHTTCEEEE-ECSSC-CHHHHHH----HHTTCCEESSCCTTSC-----CCCSEEE-ECT
T ss_pred             cEEEEEeE-CHHHHHHHHHHHHhCCCeEEE-EeCCC-ChhHHHH----HHCCCeEEeeeccccc-----CCCCEEE-Eec
Confidence            68999995 899964444445588998886 57532 2222233    2668888744433322     4789888 55 


Q ss_pred             -CchhHHHHHHHHHHcCCcEE
Q 031216          115 -DASTVYDNVKQATAFGMRSV  134 (163)
Q Consensus       115 -~p~~~~~~~~~al~~G~~vV  134 (163)
                       .|+. .+.+.+|.+.|+||.
T Consensus        69 AI~~~-npel~~A~~~gIpv~   88 (89)
T d1j6ua1          69 AVRDD-NPEIVRARMERVPIE   88 (89)
T ss_dssp             TCCTT-CHHHHHHHHTTCCEE
T ss_pred             CcCCC-CHHHHHHHHcCCCcc
Confidence             3444 345788999999985

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.09  E-value=0.014  Score=41.69  Aligned_cols=98  Identities=16%  Similarity=0.129  Sum_probs=56.2

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCccee--CCHHHHHhcccccCCccEEEEc
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAVVIDF  113 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~--~~l~ell~~~~~~~~~DVVIDf  113 (163)
                      -+|.|.|++|.+|...++.+. .-++++++.++++.. .+...-.|.   ..+.-+  .|+.+.+.+......+|+++|+
T Consensus        30 ~~VlV~Ga~G~vG~~aiq~a~-~~G~~vi~~~~~~~~-~~~~~~~Ga---~~vi~~~~~~~~~~i~~~t~~~g~d~v~d~  104 (174)
T d1yb5a2          30 ESVLVHGASGGVGLAACQIAR-AYGLKILGTAGTEEG-QKIVLQNGA---HEVFNHREVNYIDKIKKYVGEKGIDIIIEM  104 (174)
T ss_dssp             CEEEEETCSSHHHHHHHHHHH-HTTCEEEEEESSHHH-HHHHHHTTC---SEEEETTSTTHHHHHHHHHCTTCEEEEEES
T ss_pred             CEEEEEecccccccccccccc-ccCcccccccccccc-cccccccCc---ccccccccccHHHHhhhhhccCCceEEeec
Confidence            379999988999999988775 668999888764311 111111221   111112  2343433211123579999998


Q ss_pred             cCchhHHHHHHHHHH-cCCcEEEeCCC
Q 031216          114 TDASTVYDNVKQATA-FGMRSVVYVPH  139 (163)
Q Consensus       114 T~p~~~~~~~~~al~-~G~~vVigttg  139 (163)
                      .-.+ ..+.+..+++ .|.-+.+|..+
T Consensus       105 ~g~~-~~~~~~~~l~~~G~iv~~G~~~  130 (174)
T d1yb5a2         105 LANV-NLSKDLSLLSHGGRVIVVGSRG  130 (174)
T ss_dssp             CHHH-HHHHHHHHEEEEEEEEECCCCS
T ss_pred             ccHH-HHHHHHhccCCCCEEEEEecCC
Confidence            7654 3444444444 45556666653

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=96.05  E-value=0.0057  Score=45.12  Aligned_cols=66  Identities=15%  Similarity=0.100  Sum_probs=44.9

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEc
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDf  113 (163)
                      .-.+|+|+| .|++|+.+++.+. .=++++. ..|+.....+...      ..++..+.++++++.      ..|+|+-.
T Consensus        43 ~~~~vgiiG-~G~IG~~va~~l~-~fg~~v~-~~d~~~~~~~~~~------~~~~~~~~~l~~~l~------~sD~v~~~  107 (188)
T d2naca1          43 EAMHVGTVA-AGRIGLAVLRRLA-PFDVHLH-YTDRHRLPESVEK------ELNLTWHATREDMYP------VCDVVTLN  107 (188)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHG-GGTCEEE-EECSSCCCHHHHH------HHTCEECSSHHHHGG------GCSEEEEC
T ss_pred             cccceeecc-ccccchhhhhhhh-ccCceEE-EEeeccccccccc------cccccccCCHHHHHH------hccchhhc
Confidence            457999999 6999999999986 4577766 4554322222221      223455689999985      89988754


Q ss_pred             c
Q 031216          114 T  114 (163)
Q Consensus       114 T  114 (163)
                      .
T Consensus       108 ~  108 (188)
T d2naca1         108 C  108 (188)
T ss_dssp             S
T ss_pred             c
Confidence            4

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.01  E-value=0.005  Score=43.88  Aligned_cols=99  Identities=17%  Similarity=0.169  Sum_probs=51.9

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCccee--CCHHHHHhcccccCCccEEEEc
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAVVIDF  113 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~--~~l~ell~~~~~~~~~DVVIDf  113 (163)
                      =+|+|+|++|.+|...++.+......+++ ++++...-.+..+-+|..   .+.-+  .++.+.+.+......+|+++|+
T Consensus        29 ~~vlV~G~~G~vG~~~~~~~~~~g~~~V~-~~~~~~~~~~~~~~~Ga~---~~i~~~~~~~~~~~~~~~~~~~~d~vid~  104 (170)
T d1jvba2          29 KTLLVVGAGGGLGTMAVQIAKAVSGATII-GVDVREEAVEAAKRAGAD---YVINASMQDPLAEIRRITESKGVDAVIDL  104 (170)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTCCEEE-EEESSHHHHHHHHHHTCS---EEEETTTSCHHHHHHHHTTTSCEEEEEES
T ss_pred             CEEEEEeccccceeeeeeccccccccccc-ccccchhhHHHHHHcCCc---eeeccCCcCHHHHHHHHhhcccchhhhcc
Confidence            46999998899999988888765444544 555432111222222210   11111  2333322211123469999999


Q ss_pred             cCchhHHHHHHHHHHcC-CcEEEeCC
Q 031216          114 TDASTVYDNVKQATAFG-MRSVVYVP  138 (163)
Q Consensus       114 T~p~~~~~~~~~al~~G-~~vVigtt  138 (163)
                      +-.....+.+..+++.| .=+++|.+
T Consensus       105 ~g~~~~~~~a~~~l~~~G~iv~~G~~  130 (170)
T d1jvba2         105 NNSEKTLSVYPKALAKQGKYVMVGLF  130 (170)
T ss_dssp             CCCHHHHTTGGGGEEEEEEEEECCSS
T ss_pred             cccchHHHhhhhhcccCCEEEEeccc
Confidence            86655555544444443 44444443

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.99  E-value=0.0037  Score=43.71  Aligned_cols=33  Identities=15%  Similarity=0.397  Sum_probs=27.2

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~   70 (163)
                      |||+|+|++|.||+.+++.+. ..|.+++-. +++
T Consensus         1 Mki~vigGaG~iG~alA~~la-~~G~~V~l~-~R~   33 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLA-TLGHEIVVG-SRR   33 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHH-TTTCEEEEE-ESS
T ss_pred             CEEEEEeCCcHHHHHHHHHHH-HCCCEEEEE-ECC
Confidence            689999658999999999987 578998854 543

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.97  E-value=0.004  Score=44.58  Aligned_cols=75  Identities=13%  Similarity=0.248  Sum_probs=43.2

Q ss_pred             CCCeeEEEEcCCCHHHHHHHHHHHhc------CCcEEEEEEecCC-C----Ccchhh-hccCCCCCCcceeCCHHHHHhc
Q 031216           33 QSNIKVIINGAVKEIGRAAVIAVTKA------RGMEVAGAIDSHS-V----GEDIGM-VCDMEQPLEIPVMSDLTMVLGS  100 (163)
Q Consensus        33 ~~~irV~VvGa~G~mG~~i~~~i~~~------~~~eLvgvid~~~-~----g~~~~~-l~g~~~~~gi~v~~~l~ell~~  100 (163)
                      ++|+||.|+||+|+.|+.++-.+...      ...+|+ .+|... .    +.+... .........+.+.++.++.+. 
T Consensus         1 s~p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~-l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-   78 (154)
T d5mdha1           1 SEPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILV-LLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFK-   78 (154)
T ss_dssp             CCCEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEE-EECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTT-
T ss_pred             CCceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEE-EecCccchhhhhhhhhhhcccccccccccccCcccccccC-
Confidence            46899999999999999988877532      223444 455321 1    111110 011111123445677778774 


Q ss_pred             ccccCCccEEEEcc
Q 031216          101 ISQSKARAVVIDFT  114 (163)
Q Consensus       101 ~~~~~~~DVVIDfT  114 (163)
                           +.|+||-..
T Consensus        79 -----~~dvVVita   87 (154)
T d5mdha1          79 -----DLDVAILVG   87 (154)
T ss_dssp             -----TCSEEEECC
T ss_pred             -----CceEEEEec
Confidence                 899988543

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=95.97  E-value=0.017  Score=43.30  Aligned_cols=107  Identities=14%  Similarity=0.202  Sum_probs=67.7

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEc
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDf  113 (163)
                      +-.||+|-| .|++|+.+++.+.+ .|.+++ +.|...  ..+....    ..+... -+.++++.     .++|+++=+
T Consensus        26 ~gk~v~IqG-~G~VG~~~A~~L~~-~Gakvv-v~d~d~--~~~~~~~----~~g~~~-~~~~~~~~-----~~~DI~iPc   90 (201)
T d1c1da1          26 DGLTVLVQG-LGAVGGSLASLAAE-AGAQLL-VADTDT--ERVAHAV----ALGHTA-VALEDVLS-----TPCDVFAPC   90 (201)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHH-TTCEEE-EECSCH--HHHHHHH----HTTCEE-CCGGGGGG-----CCCSEEEEC
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHH-CCCEEE-EecchH--HHHHHHH----hhcccc-cCcccccc-----ccceeeecc
Confidence            447899999 79999999999875 689988 556432  1122221    123332 36677886     599999866


Q ss_pred             cCchhH-HHHHHHHHHcCCcEEEeCC--CCCHHHHHHHHHHhhhcCeEEcC
Q 031216          114 TDASTV-YDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMVSTG  161 (163)
Q Consensus       114 T~p~~~-~~~~~~al~~G~~vVigtt--g~~~e~~~~L~~~A~~~~Vv~tg  161 (163)
                      ...... .+.+.   +-+..+|+|-.  .++++.   ..+.-++.||++.+
T Consensus        91 A~~~~I~~~~a~---~i~ak~i~e~AN~p~~~~~---~~~~L~~rgI~~iP  135 (201)
T d1c1da1          91 AMGGVITTEVAR---TLDCSVVAGAANNVIADEA---ASDILHARGILYAP  135 (201)
T ss_dssp             SCSCCBCHHHHH---HCCCSEECCSCTTCBCSHH---HHHHHHHTTCEECC
T ss_pred             cccccccHHHHh---hhhhheeeccCCCCcchhh---HHHHhcccceEEEe
Confidence            655444 34443   44788888776  345443   33455567777754

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.93  E-value=0.0064  Score=46.96  Aligned_cols=32  Identities=25%  Similarity=0.289  Sum_probs=28.2

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid   68 (163)
                      .++.|+||+|.+|+.+++.+.+ .|.++.|+..
T Consensus         2 k~~LVTGatGfiG~~lv~~Ll~-~g~~V~~~~r   33 (339)
T d1n7ha_           2 KIALITGITGQDGSYLTEFLLG-KGYEVHGLIR   33 (339)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEEEEC
T ss_pred             CEEEEeCCccHHHHHHHHHHHH-CcCEEEEEEC
Confidence            5789999999999999999985 6999997765

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=95.87  E-value=0.0089  Score=42.43  Aligned_cols=96  Identities=18%  Similarity=0.160  Sum_probs=52.3

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCccee----CCHHHHHhccc--ccCCccEE
Q 031216           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM----SDLTMVLGSIS--QSKARAVV  110 (163)
Q Consensus        37 rV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~----~~l~ell~~~~--~~~~~DVV  110 (163)
                      +|+|+| +|.+|...++.+. ..+.++++ +|+...-.+...-+|.   ....++    .+.++..+.+.  ....+|+|
T Consensus        29 ~vlV~G-~G~vG~~~~~~ak-~~Ga~vi~-v~~~~~r~~~a~~~ga---~~~~~~~~~~~~~~~~~~~~~~~~g~g~D~v  102 (170)
T d1e3ja2          29 TVLVIG-AGPIGLVSVLAAK-AYGAFVVC-TARSPRRLEVAKNCGA---DVTLVVDPAKEEESSIIERIRSAIGDLPNVT  102 (170)
T ss_dssp             EEEEEC-CSHHHHHHHHHHH-HTTCEEEE-EESCHHHHHHHHHTTC---SEEEECCTTTSCHHHHHHHHHHHSSSCCSEE
T ss_pred             EEEEEc-ccccchhhHhhHh-hhcccccc-cchHHHHHHHHHHcCC---cEEEeccccccccchhhhhhhcccccCCcee
Confidence            699999 6999999887765 67889775 5543211111111111   011111    23333222111  12469999


Q ss_pred             EEccCchhHHHHHHHH-HHcCCcEEEeCC
Q 031216          111 IDFTDASTVYDNVKQA-TAFGMRSVVYVP  138 (163)
Q Consensus       111 IDfT~p~~~~~~~~~a-l~~G~~vVigtt  138 (163)
                      ||++-.....+.+..+ ...|.-+++|.+
T Consensus       103 id~~g~~~~~~~a~~~~~~~G~iv~~G~~  131 (170)
T d1e3ja2         103 IDCSGNEKCITIGINITRTGGTLMLVGMG  131 (170)
T ss_dssp             EECSCCHHHHHHHHHHSCTTCEEEECSCC
T ss_pred             eecCCChHHHHHHHHHHhcCCceEEEecC
Confidence            9999766665555445 445555556655

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=95.79  E-value=0.0027  Score=45.92  Aligned_cols=94  Identities=16%  Similarity=0.148  Sum_probs=52.4

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEccC
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT~  115 (163)
                      -+|.|.|++|.+|...++.+. .-+++++++.+++.. .+...-+|.   ..+.-|.+..+....   ...+|+|+|++-
T Consensus        29 ~~VlI~ga~G~vG~~aiqlak-~~G~~vi~~~~~~~~-~~~~~~lGa---~~~i~~~~~~~~~~~---~~g~D~v~d~~G  100 (171)
T d1iz0a2          29 EKVLVQAAAGALGTAAVQVAR-AMGLRVLAAASRPEK-LALPLALGA---EEAATYAEVPERAKA---WGGLDLVLEVRG  100 (171)
T ss_dssp             CEEEESSTTBHHHHHHHHHHH-HTTCEEEEEESSGGG-SHHHHHTTC---SEEEEGGGHHHHHHH---TTSEEEEEECSC
T ss_pred             CEEEEEeccccchhhhhhhhc-ccccccccccccccc-ccccccccc---ceeeehhhhhhhhhc---cccccccccccc
Confidence            469999989999999988765 678998887764321 222222221   122224443333322   367999999764


Q ss_pred             chhHHHHHHHHHHcCCcEEEeCC
Q 031216          116 ASTVYDNVKQATAFGMRSVVYVP  138 (163)
Q Consensus       116 p~~~~~~~~~al~~G~~vVigtt  138 (163)
                       +.....+......|.-+.+|.+
T Consensus       101 -~~~~~~~~~l~~~G~~v~~G~~  122 (171)
T d1iz0a2         101 -KEVEESLGLLAHGGRLVYIGAA  122 (171)
T ss_dssp             -TTHHHHHTTEEEEEEEEEC---
T ss_pred             -hhHHHHHHHHhcCCcEEEEeCC
Confidence             3333333333344555555544

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.79  E-value=0.011  Score=42.26  Aligned_cols=98  Identities=14%  Similarity=0.071  Sum_probs=54.9

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCccee--CCHHHHHhcccccCCccEEEEc
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAVVIDF  113 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~--~~l~ell~~~~~~~~~DVVIDf  113 (163)
                      =+|.|+|++|.+|...++.+. .-+.++++++++... .+.-.-.|   ...+..+  .++.+.+.+......+|+++|+
T Consensus        27 ~~VlI~ga~g~vG~~~iqla~-~~g~~vi~~~~~~~~-~~~l~~~G---a~~vi~~~~~~~~~~v~~~t~~~g~d~v~d~  101 (183)
T d1pqwa_          27 ERVLIHSATGGVGMAAVSIAK-MIGARIYTTAGSDAK-REMLSRLG---VEYVGDSRSVDFADEILELTDGYGVDVVLNS  101 (183)
T ss_dssp             CEEEETTTTSHHHHHHHHHHH-HHTCEEEEEESSHHH-HHHHHTTC---CSEEEETTCSTHHHHHHHHTTTCCEEEEEEC
T ss_pred             CEEEEECCCCCcccccchhhc-cccccceeeeccccc-cccccccc---ccccccCCccCHHHHHHHHhCCCCEEEEEec
Confidence            479999999999999988775 678999988774311 11111111   1111112  2343333222223579999998


Q ss_pred             cCchhHHHHHHHHHHcCCcEEEeCC
Q 031216          114 TDASTVYDNVKQATAFGMRSVVYVP  138 (163)
Q Consensus       114 T~p~~~~~~~~~al~~G~~vVigtt  138 (163)
                      .-.+.....+..+...|.-+.+|..
T Consensus       102 ~g~~~~~~~~~~l~~~G~~v~~G~~  126 (183)
T d1pqwa_         102 LAGEAIQRGVQILAPGGRFIELGKK  126 (183)
T ss_dssp             CCTHHHHHHHHTEEEEEEEEECSCG
T ss_pred             ccchHHHHHHHHhcCCCEEEEEccC
Confidence            8765444444433344454445543

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=95.78  E-value=0.022  Score=43.00  Aligned_cols=95  Identities=20%  Similarity=0.257  Sum_probs=57.9

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC----------------CCcc----hhh-hccCCCCCCcceeC-
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS----------------VGED----IGM-VCDMEQPLEIPVMS-   92 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~----------------~g~~----~~~-l~g~~~~~gi~v~~-   92 (163)
                      ..||+|+| +|..|..++..+. ..|+.=..++|.+.                .|+.    +.+ +..+.....+..+. 
T Consensus        30 ~~~VliiG-~GglGs~va~~La-~~Gvg~i~lvD~D~Ve~sNL~RQ~l~~~~diG~~K~~~a~~~l~~~np~~~i~~~~~  107 (247)
T d1jw9b_          30 DSRVLIVG-LGGLGCAASQYLA-SAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNA  107 (247)
T ss_dssp             HCEEEEEC-CSHHHHHHHHHHH-HHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECS
T ss_pred             CCCEEEEC-CCHHHHHHHHHHH-HcCCCeEEEECCcccchhhhhhhccccHhhcCchHHHHHHHHHHHhhcccchhhhhh
Confidence            36899999 5999999999987 56887777889431                1111    000 00000011122121 


Q ss_pred             -----CHHHHHhcccccCCccEEEEccCchhH-HHHHHHHHHcCCcEEEeC
Q 031216           93 -----DLTMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYV  137 (163)
Q Consensus        93 -----~l~ell~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigt  137 (163)
                           +.+..+      ...|+++|++.+... ...-..|.++++|+|.|.
T Consensus       108 ~~~~~~~~~~~------~~~divid~~d~~~~~~~in~~~~~~~ip~i~g~  152 (247)
T d1jw9b_         108 LLDDAELAALI------AEHDLVLDCTDNVAVRNQLNAGCFAAKVPLVSGA  152 (247)
T ss_dssp             CCCHHHHHHHH------HTSSEEEECCSSHHHHHHHHHHHHHHTCCEEEEE
T ss_pred             hhhhccccccc------cccceeeeccchhhhhhhHHHHHHHhCCCccccc
Confidence                 112222      479999999866555 455578889999999763

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=95.77  E-value=0.0093  Score=43.16  Aligned_cols=98  Identities=13%  Similarity=0.104  Sum_probs=56.1

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCccee--CC--HHHHHhcccccCCccEEE
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM--SD--LTMVLGSISQSKARAVVI  111 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~--~~--l~ell~~~~~~~~~DVVI  111 (163)
                      =+|+|+|+ |.+|...++.+.. -+..-+.++|+...-.+....+|..   .+.-+  .|  .++.... ..+..+|++|
T Consensus        29 ~~VlV~Ga-GgvGl~a~~~ak~-~G~~~Vi~~d~~~~kl~~a~~lGa~---~~i~~~~~d~~~~~~~~~-~~~~G~d~vi  102 (174)
T d1p0fa2          29 STCAVFGL-GGVGFSAIVGCKA-AGASRIIGVGTHKDKFPKAIELGAT---ECLNPKDYDKPIYEVICE-KTNGGVDYAV  102 (174)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHH-HTCSEEEEECSCGGGHHHHHHTTCS---EEECGGGCSSCHHHHHHH-HTTSCBSEEE
T ss_pred             CEEEEECC-CchhHHHHHHHHH-cCCceeeccCChHHHHHHHHHcCCc---EEEcCCCchhHHHHHHHH-hcCCCCcEEE
Confidence            36999995 9999998888774 4555455677543212333333321   11111  12  3333321 1134799999


Q ss_pred             EccCchhHHHHHHHHH-H-cCCcEEEeCCC
Q 031216          112 DFTDASTVYDNVKQAT-A-FGMRSVVYVPH  139 (163)
Q Consensus       112 DfT~p~~~~~~~~~al-~-~G~~vVigttg  139 (163)
                      |++-.....+....++ . .|+-+++|.++
T Consensus       103 d~~g~~~~~~~~~~~~~~~~G~~v~vG~~~  132 (174)
T d1p0fa2         103 ECAGRIETMMNALQSTYCGSGVTVVLGLAS  132 (174)
T ss_dssp             ECSCCHHHHHHHHHTBCTTTCEEEECCCCC
T ss_pred             EcCCCchHHHHHHHHHHHhcCceEEEEEec
Confidence            9997766665555544 4 36777787653

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=95.77  E-value=0.023  Score=40.59  Aligned_cols=73  Identities=19%  Similarity=0.160  Sum_probs=44.7

Q ss_pred             CCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC---CC--cchhhhcc-CCCCCCcceeCCHHHHHhcccccCC
Q 031216           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS---VG--EDIGMVCD-MEQPLEIPVMSDLTMVLGSISQSKA  106 (163)
Q Consensus        33 ~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~---~g--~~~~~l~g-~~~~~gi~v~~~l~ell~~~~~~~~  106 (163)
                      +++.||+|+|+ |+.|+.++-.+...+=.||+ ++|...   .|  .|...... ......+...++.++.+.      .
T Consensus         5 ~k~~KI~IIGa-G~VG~~lA~~l~~~~~~el~-L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~------~   76 (154)
T d1pzga1           5 QRRKKVAMIGS-GMIGGTMGYLCALRELADVV-LYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALT------G   76 (154)
T ss_dssp             SCCCEEEEECC-SHHHHHHHHHHHHHTCCEEE-EECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHT------T
T ss_pred             cCCCcEEEECC-CHHHHHHHHHHHhCCCceEE-EEEeccccchhHHHHHhhhccccCCeeEEeccCchhhhhc------C
Confidence            46789999996 99999888777665545876 788432   11  12221110 001222333567777774      8


Q ss_pred             ccEEEEc
Q 031216          107 RAVVIDF  113 (163)
Q Consensus       107 ~DVVIDf  113 (163)
                      .|+||..
T Consensus        77 adiVvit   83 (154)
T d1pzga1          77 ADCVIVT   83 (154)
T ss_dssp             CSEEEEC
T ss_pred             CCeEEEe
Confidence            9998854

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=95.67  E-value=0.014  Score=38.75  Aligned_cols=86  Identities=9%  Similarity=0.062  Sum_probs=54.9

Q ss_pred             CCeeEEEEcCCCHHHHH-HHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEE
Q 031216           34 SNIKVIINGAVKEIGRA-AVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~-i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVID  112 (163)
                      ++.||-++|. |++|-. +++.+ ...|.++.| .|... ......+.    ..|+.++...++..-     .++|+|| 
T Consensus         7 ~~~~ihfiGi-gG~GMs~LA~~L-~~~G~~VsG-SD~~~-~~~~~~L~----~~Gi~v~~g~~~~~i-----~~~d~vV-   72 (96)
T d1p3da1           7 RVQQIHFIGI-GGAGMSGIAEIL-LNEGYQISG-SDIAD-GVVTQRLA----QAGAKIYIGHAEEHI-----EGASVVV-   72 (96)
T ss_dssp             TCCEEEEETT-TSTTHHHHHHHH-HHHTCEEEE-EESCC-SHHHHHHH----HTTCEEEESCCGGGG-----TTCSEEE-
T ss_pred             hCCEEEEEEE-CHHHHHHHHHHH-HhCCCEEEE-EeCCC-ChhhhHHH----HCCCeEEECCccccC-----CCCCEEE-
Confidence            4678999994 899954 45554 578999886 57432 22333333    457777644433322     4889887 


Q ss_pred             cc--CchhHHHHHHHHHHcCCcEE
Q 031216          113 FT--DASTVYDNVKQATAFGMRSV  134 (163)
Q Consensus       113 fT--~p~~~~~~~~~al~~G~~vV  134 (163)
                      .|  .|+...+ +..|.++|+|+|
T Consensus        73 ~S~AI~~~npe-l~~A~~~gipii   95 (96)
T d1p3da1          73 VSSAIKDDNPE-LVTSKQKRIPVI   95 (96)
T ss_dssp             ECTTSCTTCHH-HHHHHHTTCCEE
T ss_pred             ECCCcCCCCHH-HHHHHHcCCCEE
Confidence            55  3544444 677899999986

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.65  E-value=0.005  Score=45.22  Aligned_cols=111  Identities=11%  Similarity=0.087  Sum_probs=66.6

Q ss_pred             eeccCCCCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhccccc
Q 031216           25 ISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQS  104 (163)
Q Consensus        25 ~~~~~~~~~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~  104 (163)
                      |.+++|..-.-.+|+|+| +|++||.+++.+. --++++. ++|..+    ...+...  -.+.. ..++++++.     
T Consensus        14 ~~r~t~~~l~Gk~v~V~G-yG~iG~g~A~~~r-g~G~~V~-v~e~dp----~~al~A~--~dG~~-v~~~~~a~~-----   78 (163)
T d1li4a1          14 IKRATDVMIAGKVAVVAG-YGDVGKGCAQALR-GFGARVI-ITEIDP----INALQAA--MEGYE-VTTMDEACQ-----   78 (163)
T ss_dssp             HHHHHCCCCTTCEEEEEC-CSHHHHHHHHHHH-HTTCEEE-EECSCH----HHHHHHH--HTTCE-ECCHHHHTT-----
T ss_pred             HHHHhCceecCCEEEEec-cccccHHHHHHHH-hCCCeeE-eeeccc----chhHHhh--cCceE-eeehhhhhh-----
Confidence            345666555557899999 8999999999987 4577776 566532    1122111  11222 347888874     


Q ss_pred             CCccEEEEcc-CchhH-HHHHHHHHHcCCcEEEeCCC-CC-HHHHHHHHHHhhh
Q 031216          105 KARAVVIDFT-DASTV-YDNVKQATAFGMRSVVYVPH-IQ-LETVSALSAFCDK  154 (163)
Q Consensus       105 ~~~DVVIDfT-~p~~~-~~~~~~al~~G~~vVigttg-~~-~e~~~~L~~~A~~  154 (163)
                       ..|++|-.| .++.. .+++.   +.+-.+|+...| ++ +-+.+.|.+.+.+
T Consensus        79 -~adivvtaTGn~~vI~~eh~~---~MKdgaIL~N~Ghfd~EId~~~L~~~~~~  128 (163)
T d1li4a1          79 -EGNIFVTTTGCIDIILGRHFE---QMKDDAIVCNIGHFDVEIDVKWLNENAVE  128 (163)
T ss_dssp             -TCSEEEECSSCSCSBCHHHHT---TCCTTEEEEECSSSTTSBCHHHHHHHCSE
T ss_pred             -hccEEEecCCCccchhHHHHH---hccCCeEEEEeccccceecHHHHhhccce
Confidence             899988555 33444 34443   334445555554 43 4456667776644

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.62  E-value=0.011  Score=41.97  Aligned_cols=34  Identities=21%  Similarity=0.198  Sum_probs=26.8

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 031216           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (163)
Q Consensus        37 rV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~   70 (163)
                      ||+|+||+|++|+.++-.+...+-+.=..++|..
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~   35 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIA   35 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESS
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEecc
Confidence            8999998899999999888866554445578853

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=95.62  E-value=0.014  Score=41.36  Aligned_cols=93  Identities=12%  Similarity=0.024  Sum_probs=55.5

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcce---eCCHHHHHhcccccCCccEEEEc
Q 031216           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV---MSDLTMVLGSISQSKARAVVIDF  113 (163)
Q Consensus        37 rV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v---~~~l~ell~~~~~~~~~DVVIDf  113 (163)
                      +|+|.|+ |.+|...++.+.. -+...+.++++...-.+...-+|..  .-+..   .++.++.+... ....+|++||+
T Consensus        31 tVlI~Ga-GGvG~~aiq~ak~-~G~~~vi~~~~~~~k~~~ak~lGa~--~~i~~~~~~~~~~~~~~~~-~~~g~D~vid~  105 (176)
T d2fzwa2          31 VCAVFGL-GGVGLAVIMGCKV-AGASRIIGVDINKDKFARAKEFGAT--ECINPQDFSKPIQEVLIEM-TDGGVDYSFEC  105 (176)
T ss_dssp             EEEEECC-SHHHHHHHHHHHH-HTCSEEEEECSCGGGHHHHHHHTCS--EEECGGGCSSCHHHHHHHH-TTSCBSEEEEC
T ss_pred             EEEEecc-hhHHHHHHHHHHH-HhcCceEEEcccHHHHHHHHHhCCc--EEEeCCchhhHHHHHHHHH-cCCCCcEeeec
Confidence            5999996 8999988887765 4666666677543222333333321  11111   12333333211 12579999999


Q ss_pred             cCchhHHHHHHHHHHcCCcEE
Q 031216          114 TDASTVYDNVKQATAFGMRSV  134 (163)
Q Consensus       114 T~p~~~~~~~~~al~~G~~vV  134 (163)
                      +-.....+.+..+++.|..++
T Consensus       106 ~G~~~~~~~~~~~~~~g~~~~  126 (176)
T d2fzwa2         106 IGNVKVMRAALEACHKGWGVS  126 (176)
T ss_dssp             SCCHHHHHHHHHTBCTTTCEE
T ss_pred             CCCHHHHHHHHHhhcCCceeE
Confidence            987778888888887774443

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.61  E-value=0.036  Score=42.19  Aligned_cols=82  Identities=11%  Similarity=0.131  Sum_probs=51.5

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCcc---EEEE
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA---VVID  112 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~D---VVID  112 (163)
                      ..+.|.|+++.+|+.+++.+. ..|..|+ +++++.  .+..+.              .+++.+.    ...+   +..|
T Consensus         6 K~~lITGas~GIG~aia~~la-~~Ga~V~-i~~r~~--~~~~~~--------------~~~l~~~----~g~~~~~~~~D   63 (251)
T d1vl8a_           6 RVALVTGGSRGLGFGIAQGLA-EAGCSVV-VASRNL--EEASEA--------------AQKLTEK----YGVETMAFRCD   63 (251)
T ss_dssp             CEEEEETTTSHHHHHHHHHHH-HTTCEEE-EEESCH--HHHHHH--------------HHHHHHH----HCCCEEEEECC
T ss_pred             CEEEEeCCCCHHHHHHHHHHH-HCCCEEE-EEECCH--HHHHHH--------------HHHHHHH----hCCcEEEEEcc
Confidence            468899999999999999997 5688876 455432  111111              1122211    1223   3457


Q ss_pred             ccCchhHHHHHHHHHHc--CCcEEEeCCC
Q 031216          113 FTDASTVYDNVKQATAF--GMRSVVYVPH  139 (163)
Q Consensus       113 fT~p~~~~~~~~~al~~--G~~vVigttg  139 (163)
                      .+.++...+.+..+.+.  ++++++-..|
T Consensus        64 v~~~~~v~~~~~~~~~~~g~iDiLVnnAG   92 (251)
T d1vl8a_          64 VSNYEEVKKLLEAVKEKFGKLDTVVNAAG   92 (251)
T ss_dssp             TTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             CCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            78888887777776654  6888875543

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=95.56  E-value=0.011  Score=42.97  Aligned_cols=99  Identities=13%  Similarity=0.160  Sum_probs=55.8

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCc-EEEEEEecCCCCcchhhhccCCCCCCcceeCC-HHHHHhcccccCCccEEEEcc
Q 031216           37 KVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSD-LTMVLGSISQSKARAVVIDFT  114 (163)
Q Consensus        37 rV~VvGa~G~mG~~i~~~i~~~~~~-eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~-l~ell~~~~~~~~~DVVIDfT  114 (163)
                      .|+|+|+ |.+|...++.+. ..+. +++ ++|....-.+...-+|...-.+..=.++ .+++.. .-....+|++||++
T Consensus        32 tVlI~G~-GgvGl~ai~~ak-~~G~~~Vi-~vd~~~~kl~~Ak~~GA~~~in~~~~~~~~~~~~~-~~~g~G~d~vi~~~  107 (176)
T d1d1ta2          32 TCVVFGL-GGVGLSVIMGCK-SAGASRII-GIDLNKDKFEKAMAVGATECISPKDSTKPISEVLS-EMTGNNVGYTFEVI  107 (176)
T ss_dssp             EEEEECC-SHHHHHHHHHHH-HTTCSEEE-EECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHH-HHHTSCCCEEEECS
T ss_pred             EEEEECC-CchhHHHHHHHH-HcCCceEE-EecCcHHHHHHHHhcCCcEEECccccchHHHHHHH-HhccccceEEEEeC
Confidence            4999995 999999998876 5564 555 5675432233333333210000000111 222221 11135899999999


Q ss_pred             CchhHHHHHHHHH-Hc-CCcEEEeCCC
Q 031216          115 DASTVYDNVKQAT-AF-GMRSVVYVPH  139 (163)
Q Consensus       115 ~p~~~~~~~~~al-~~-G~~vVigttg  139 (163)
                      ......+.+...+ +. |+-+++|.+.
T Consensus       108 g~~~~~~~a~~~~~~~~G~~v~vG~~~  134 (176)
T d1d1ta2         108 GHLETMIDALASCHMNYGTSVVVGVPP  134 (176)
T ss_dssp             CCHHHHHHHHTTSCTTTCEEEECSCCC
T ss_pred             CchHHHHHHHHHhhcCCeEEEEEEccc
Confidence            8777666554444 33 6888888763

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=95.47  E-value=0.059  Score=40.69  Aligned_cols=76  Identities=25%  Similarity=0.328  Sum_probs=48.1

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCc-cEEEEcc
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKAR-AVVIDFT  114 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~-DVVIDfT  114 (163)
                      .++.|.|+++++|+.+++.+. ..|.+++. .+++.  .++.                  ++.++    .+. =+..|++
T Consensus         6 K~~lITGas~GIG~aia~~l~-~~G~~V~~-~~r~~--~~l~------------------~~~~~----~~~~~~~~Dv~   59 (242)
T d1ulsa_           6 KAVLITGAAHGIGRATLELFA-KEGARLVA-CDIEE--GPLR------------------EAAEA----VGAHPVVMDVA   59 (242)
T ss_dssp             CEEEEESTTSHHHHHHHHHHH-HTTCEEEE-EESCH--HHHH------------------HHHHT----TTCEEEECCTT
T ss_pred             CEEEEeCCCCHHHHHHHHHHH-HCCCEEEE-EECCH--HHHH------------------HHHHH----cCCeEEEEecC
Confidence            468999999999999999997 56888764 55432  1111                  11111    011 1446777


Q ss_pred             CchhHHHHHHHHHHc--CCcEEEeC
Q 031216          115 DASTVYDNVKQATAF--GMRSVVYV  137 (163)
Q Consensus       115 ~p~~~~~~~~~al~~--G~~vVigt  137 (163)
                      .++...+.+..+.+.  ++++++-.
T Consensus        60 ~~~~v~~~~~~~~~~~g~iDilVnn   84 (242)
T d1ulsa_          60 DPASVERGFAEALAHLGRLDGVVHY   84 (242)
T ss_dssp             CHHHHHHHHHHHHHHHSSCCEEEEC
T ss_pred             CHHHHHHHHHHHHHhcCCceEEEEC
Confidence            787777776666554  57777644

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.47  E-value=0.019  Score=44.72  Aligned_cols=28  Identities=25%  Similarity=0.488  Sum_probs=24.9

Q ss_pred             EEEEcCCCHHHHHHHHHHHhcCCcEEEEE
Q 031216           38 VIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (163)
Q Consensus        38 V~VvGa~G~mG~~i~~~i~~~~~~eLvgv   66 (163)
                      |.|+|++|.+|+.+++.+.+ .+.++.++
T Consensus         4 ILVTGatGfIG~~lv~~Ll~-~g~~V~~~   31 (347)
T d1z45a2           4 VLVTGGAGYIGSHTVVELIE-NGYDCVVA   31 (347)
T ss_dssp             EEEETTTSHHHHHHHHHHHH-TTCEEEEE
T ss_pred             EEEeCCCcHHHHHHHHHHHH-CcCeEEEE
Confidence            88999999999999999985 57998875

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.46  E-value=0.066  Score=35.61  Aligned_cols=88  Identities=13%  Similarity=0.036  Sum_probs=54.3

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCccee-CCHHHHHhcccccCCccEEEEcc
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM-SDLTMVLGSISQSKARAVVIDFT  114 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~-~~l~ell~~~~~~~~~DVVIDfT  114 (163)
                      .||+|+| .|+.|..-++.+.+ .+.++.- ++... ..+...+..   ..++... ..+++..-     ...++|+-.|
T Consensus        13 k~vlVvG-~G~va~~ka~~ll~-~ga~v~v-~~~~~-~~~~~~~~~---~~~i~~~~~~~~~~dl-----~~~~lv~~at   80 (113)
T d1pjqa1          13 RDCLIVG-GGDVAERKARLLLE-AGARLTV-NALTF-IPQFTVWAN---EGMLTLVEGPFDETLL-----DSCWLAIAAT   80 (113)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHH-TTBEEEE-EESSC-CHHHHHHHT---TTSCEEEESSCCGGGG-----TTCSEEEECC
T ss_pred             CEEEEEC-CCHHHHHHHHHHHH-CCCeEEE-EeccC-ChHHHHHHh---cCCceeeccCCCHHHh-----CCCcEEeecC
Confidence            6899999 59999999999884 5788774 44322 123333332   2233222 23332221     3788888776


Q ss_pred             CchhH-HHHHHHHHHcCCcEEE
Q 031216          115 DASTV-YDNVKQATAFGMRSVV  135 (163)
Q Consensus       115 ~p~~~-~~~~~~al~~G~~vVi  135 (163)
                      ..... .+....|.++|++|=+
T Consensus        81 ~d~~~n~~i~~~a~~~~ilVNv  102 (113)
T d1pjqa1          81 DDDTVNQRVSDAAESRRIFCNV  102 (113)
T ss_dssp             SCHHHHHHHHHHHHHTTCEEEE
T ss_pred             CCHHHHHHHHHHHHHcCCEEEe
Confidence            55444 5777888899988744

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=95.43  E-value=0.013  Score=41.83  Aligned_cols=95  Identities=16%  Similarity=0.112  Sum_probs=50.6

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCccee--CCHHHHHhcccccCCccEEEEcc
Q 031216           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAVVIDFT  114 (163)
Q Consensus        37 rV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~--~~l~ell~~~~~~~~~DVVIDfT  114 (163)
                      +|.|+|+ |.+|...++.+... +...+.++|+...-.+...-.|.   ..+..+  +++++.++. .....+|++||++
T Consensus        35 ~vli~Ga-G~vG~~~~~~a~~~-g~~~vv~~~~~~~k~~~~~~~ga---~~~i~~~~~~~~~~~~~-~~~~g~d~vid~~  108 (172)
T d1h2ba2          35 YVAIVGV-GGLGHIAVQLLKVM-TPATVIALDVKEEKLKLAERLGA---DHVVDARRDPVKQVMEL-TRGRGVNVAMDFV  108 (172)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHH-CCCEEEEEESSHHHHHHHHHTTC---SEEEETTSCHHHHHHHH-TTTCCEEEEEESS
T ss_pred             EEEEeCC-ChHHHHHHHHHHhh-cCcccccccchhHHHHHHhhccc---ceeecCcccHHHHHHHh-hCCCCceEEEEec
Confidence            5999995 99999988887654 54445566653211111111111   111111  223333321 1234699999999


Q ss_pred             CchhHHHHHHHHHHc-CCcEEEeC
Q 031216          115 DASTVYDNVKQATAF-GMRSVVYV  137 (163)
Q Consensus       115 ~p~~~~~~~~~al~~-G~~vVigt  137 (163)
                      -.....+.+..+++. |.-+++|-
T Consensus       109 g~~~~~~~a~~~l~~~G~iv~~G~  132 (172)
T d1h2ba2         109 GSQATVDYTPYLLGRMGRLIIVGY  132 (172)
T ss_dssp             CCHHHHHHGGGGEEEEEEEEECCC
T ss_pred             CcchHHHHHHHHHhCCCEEEEEeC
Confidence            666555555544444 44444543

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=95.43  E-value=0.015  Score=43.39  Aligned_cols=62  Identities=15%  Similarity=0.044  Sum_probs=42.9

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT  114 (163)
                      -.+|||+| +|++|+.+++.+. .=++++.+ +|+...  +....      .+. -..++++++.      ..|+|+...
T Consensus        43 gk~vgIiG-~G~IG~~va~~l~-~fg~~V~~-~d~~~~--~~~~~------~~~-~~~~l~~~l~------~sDii~~~~  104 (197)
T d1j4aa1          43 DQVVGVVG-TGHIGQVFMQIME-GFGAKVIT-YDIFRN--PELEK------KGY-YVDSLDDLYK------QADVISLHV  104 (197)
T ss_dssp             GSEEEEEC-CSHHHHHHHHHHH-HTTCEEEE-ECSSCC--HHHHH------TTC-BCSCHHHHHH------HCSEEEECS
T ss_pred             CCeEEEec-ccccchhHHHhHh-hhcccccc-cCcccc--ccccc------cee-eecccccccc------ccccccccC
Confidence            47899999 7999999999986 55889875 564321  11111      112 2468999986      789888554

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=95.43  E-value=0.0038  Score=44.80  Aligned_cols=97  Identities=16%  Similarity=0.150  Sum_probs=57.4

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCccee--CCHHHHHhcccccCCccEEEEcc
Q 031216           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAVVIDFT  114 (163)
Q Consensus        37 rV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~--~~l~ell~~~~~~~~~DVVIDfT  114 (163)
                      +|.|.|++|.+|...++.+. ..+.++++...++.. .+...-+|.   ..+.-+  .|+.+.+.++..+..+|+++|+.
T Consensus        31 ~Vlv~ga~g~vG~~~iqlak-~~Ga~Vi~~~~s~~k-~~~~~~lGa---~~vi~~~~~d~~~~v~~~t~g~g~d~v~d~~  105 (179)
T d1qora2          31 QFLFHAAAGGVGLIACQWAK-ALGAKLIGTVGTAQK-AQSALKAGA---WQVINYREEDLVERLKEITGGKKVRVVYDSV  105 (179)
T ss_dssp             EEEESSTTBHHHHHHHHHHH-HHTCEEEEEESSHHH-HHHHHHHTC---SEEEETTTSCHHHHHHHHTTTCCEEEEEECS
T ss_pred             EEEEEccccccchHHHHHHH-HhCCeEeecccchHH-HHHHHhcCC---eEEEECCCCCHHHHHHHHhCCCCeEEEEeCc
Confidence            79999999999999988775 678998876654311 111111221   112112  34444333222346799999998


Q ss_pred             CchhHHHHHHHHHHcCCcEEEeCC
Q 031216          115 DASTVYDNVKQATAFGMRSVVYVP  138 (163)
Q Consensus       115 ~p~~~~~~~~~al~~G~~vVigtt  138 (163)
                      .++............|.-++.+..
T Consensus       106 g~~~~~~~~~~l~~~G~~v~~g~~  129 (179)
T d1qora2         106 GRDTWERSLDCLQRRGLMVSFGNS  129 (179)
T ss_dssp             CGGGHHHHHHTEEEEEEEEECCCT
T ss_pred             cHHHHHHHHHHHhcCCeeeecccc
Confidence            776655555544555655555544

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=95.41  E-value=0.037  Score=42.70  Aligned_cols=32  Identities=19%  Similarity=0.147  Sum_probs=27.2

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid   68 (163)
                      .||.|+|++|.+|+.+++.+.+ .+.++.++..
T Consensus         9 KkILVTG~tGfIGs~lv~~Ll~-~g~~V~~~~r   40 (356)
T d1rkxa_           9 KRVFVTGHTGFKGGWLSLWLQT-MGATVKGYSL   40 (356)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEEEES
T ss_pred             CEEEEECCCCHHHHHHHHHHHH-CCCEEEEEEC
Confidence            7999999999999999999985 5888775543

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=95.39  E-value=0.023  Score=40.87  Aligned_cols=96  Identities=15%  Similarity=0.096  Sum_probs=54.9

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCccee---CCHHHHHhcccccCCccEEEE
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM---SDLTMVLGSISQSKARAVVID  112 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~---~~l~ell~~~~~~~~~DVVID  112 (163)
                      =+|.|.|++|..|...++... .-++++.++..++.. .+.....|   ...+-.+   +..++++.. .....+|+|+|
T Consensus        31 ~~VlV~ga~ggvG~~aiqlak-~~Ga~vi~~~~~~~~-~~~~~~~G---a~~vi~~~~~~~~~~~~~~-~~~~Gvd~v~D  104 (182)
T d1v3va2          31 ETVLVSAAAGAVGSVVGQIAK-LKGCKVVGAAGSDEK-IAYLKQIG---FDAAFNYKTVNSLEEALKK-ASPDGYDCYFD  104 (182)
T ss_dssp             CEEEESSTTSHHHHHHHHHHH-HTTCEEEEEESSHHH-HHHHHHTT---CSEEEETTSCSCHHHHHHH-HCTTCEEEEEE
T ss_pred             CEEEEEeCCCchhHHHHHHHH-ccCCEEEEeCCCHHH-HHHHHhhh---hhhhcccccccHHHHHHHH-hhcCCCceeEE
Confidence            458999999999998888765 778999988764311 11111122   1111111   222333321 12357999999


Q ss_pred             ccCchhHHHHHHHHHHcCCcEEEeC
Q 031216          113 FTDASTVYDNVKQATAFGMRSVVYV  137 (163)
Q Consensus       113 fT~p~~~~~~~~~al~~G~~vVigt  137 (163)
                      +.-.+...+.+......|.-+++|.
T Consensus       105 ~vG~~~~~~~~~~l~~~G~~v~~G~  129 (182)
T d1v3va2         105 NVGGEFLNTVLSQMKDFGKIAICGA  129 (182)
T ss_dssp             SSCHHHHHHHGGGEEEEEEEEECCC
T ss_pred             ecCchhhhhhhhhccCCCeEEeecc
Confidence            8865544444444445566666664

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=95.29  E-value=0.037  Score=39.36  Aligned_cols=94  Identities=10%  Similarity=0.047  Sum_probs=51.5

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCccee----CCHHHHHhcccccCCccEEEE
Q 031216           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM----SDLTMVLGSISQSKARAVVID  112 (163)
Q Consensus        37 rV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~----~~l~ell~~~~~~~~~DVVID  112 (163)
                      .|+|+|+ |.+|...+..+...-..+++ ++++...-.+...-.|..   ....+    +.+++..... ....+|++||
T Consensus        31 tVlV~Ga-GG~G~~~~~~~~~~g~~~Vi-~~~~~~~k~~~a~~~Ga~---~~i~~~~~~~~~~~~~~~~-~~~G~D~vid  104 (176)
T d2jhfa2          31 TCAVFGL-GGVGLSVIMGCKAAGAARII-GVDINKDKFAKAKEVGAT---ECVNPQDYKKPIQEVLTEM-SNGGVDFSFE  104 (176)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTCSEEE-EECSCGGGHHHHHHTTCS---EEECGGGCSSCHHHHHHHH-TTSCBSEEEE
T ss_pred             EEEEECC-CCcHHHHHHHHHHcCCceEE-eecCcHHHHHHHHHhCCe---eEEecCCchhHHHHHHHHH-hcCCCCEEEe
Confidence            5999996 89999998888755444554 566432212222222211   11111    2233333211 1247999999


Q ss_pred             ccCchhHHHHHHHHHHcC-CcEEEe
Q 031216          113 FTDASTVYDNVKQATAFG-MRSVVY  136 (163)
Q Consensus       113 fT~p~~~~~~~~~al~~G-~~vVig  136 (163)
                      ++-.....+.+...+..| ..++++
T Consensus       105 ~~G~~~~~~~a~~~~~~~~g~~~~~  129 (176)
T d2jhfa2         105 VIGRLDTMVTALSCCQEAYGVSVIV  129 (176)
T ss_dssp             CSCCHHHHHHHHHHBCTTTCEEEEC
T ss_pred             cCCchhHHHHHHHHHhcCCcceEEe
Confidence            997777766665555554 343433

>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Trypanosoma brucei [TaxId: 5691]

Probab=95.25  E-value=0.0094  Score=47.29  Aligned_cols=32  Identities=25%  Similarity=0.372  Sum_probs=28.7

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid   68 (163)
                      |||.|+|++|.+|+.+++.+.+..+.++++ +|
T Consensus         3 MKVLITG~tGfIGs~lv~~LL~~~~~~V~~-~D   34 (383)
T d1gy8a_           3 MRVLVCGGAGYIGSHFVRALLRDTNHSVVI-VD   34 (383)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCCCEEEE-EE
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHhCCCEEEE-Ee
Confidence            499999999999999999998888999885 44

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.25  E-value=0.018  Score=45.87  Aligned_cols=114  Identities=9%  Similarity=0.022  Sum_probs=72.3

Q ss_pred             CCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhhccCCC-------CCCcceeCCHHHHHh
Q 031216           32 PQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMVCDMEQ-------PLEIPVMSDLTMVLG   99 (163)
Q Consensus        32 ~~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~-----~~g~~~~~l~g~~~-------~~gi~v~~~l~ell~   99 (163)
                      +-+..+|+|-| .|++|+..++.+. ..|..++++.|+.     ..|.|+.++.....       ..+..  -+.++++.
T Consensus        33 ~L~gktvaIqG-fGnVG~~~A~~L~-e~Gakvv~vsD~~G~i~~~~Gld~~~L~~~~~~~~~~~~~~~~~--~~~~~~~~  108 (293)
T d1hwxa1          33 GFGDKTFAVQG-FGNVGLHSMRYLH-RFGAKCVAVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAK--IYEGSILE  108 (293)
T ss_dssp             SSTTCEEEEEC-CSHHHHHHHHHHH-HTTCEEEEEEETTEEECCTTCCCHHHHHHHHHTTSSSTTCTTSC--BCCSCGGG
T ss_pred             CCCCCEEEEEC-CCHHHHHHHHHHH-HCCCEEEEEEccchhhccccccchHHHHHHHHHcCCeecccccc--cCCccccc
Confidence            34457899999 7999999999987 5699999999953     45666555432110       11111  12345665


Q ss_pred             cccccCCccEEEEccCchhH-HHHHHHHHHcCCcEEEeCC--CCCHHHHHHHHHHhhhcCeEEcC
Q 031216          100 SISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMVSTG  161 (163)
Q Consensus       100 ~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigtt--g~~~e~~~~L~~~A~~~~Vv~tg  161 (163)
                           .++|++|=+...... .+++.   +-+.++|++-.  .++++..+.    -++.+|++.+
T Consensus       109 -----~~~DIliPaA~~~~I~~~~a~---~l~ak~I~EgAN~P~t~eA~~~----L~~~gI~viP  161 (293)
T d1hwxa1         109 -----VDCDILIPAASEKQLTKSNAP---RVKAKIIAEGANGPTTPQADKI----FLERNIMVIP  161 (293)
T ss_dssp             -----CCCSEEEECSSSSCBCTTTGG---GCCCSEEECCSSSCBCHHHHHH----HHHTTCEEEC
T ss_pred             -----CCccEEeeccccccccHHHHH---HHhhCEEeccCCCCCCcchHHH----HHHCCCEEeC
Confidence                 599999966544433 23333   44788998776  356665333    3456777643

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=95.22  E-value=0.083  Score=40.02  Aligned_cols=79  Identities=24%  Similarity=0.307  Sum_probs=48.3

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCcc-EEEEcc
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~D-VVIDfT  114 (163)
                      ..+.|.|+++++|+.+++.+. ..|.+++ ++|++.  .++.++.              ++ +.     .++. +..|.|
T Consensus         6 K~alVTGas~GIG~aia~~la-~~Ga~V~-~~~r~~--~~l~~~~--------------~~-~~-----~~~~~~~~Dvt   61 (256)
T d1k2wa_           6 KTALITGSARGIGRAFAEAYV-REGARVA-IADINL--EAARATA--------------AE-IG-----PAACAIALDVT   61 (256)
T ss_dssp             EEEEEETCSSHHHHHHHHHHH-HTTEEEE-EEESCH--HHHHHHH--------------HH-HC-----TTEEEEECCTT
T ss_pred             CEEEEeCCCCHHHHHHHHHHH-HCCCEEE-EEECCH--HHHHHHH--------------HH-hC-----CceEEEEeeCC
Confidence            468899999999999999988 5688876 455432  1111111              11 11     1111 345677


Q ss_pred             CchhHHHHHHHHHHc--CCcEEEeCC
Q 031216          115 DASTVYDNVKQATAF--GMRSVVYVP  138 (163)
Q Consensus       115 ~p~~~~~~~~~al~~--G~~vVigtt  138 (163)
                      .++...+.+..+.+.  ++.+++-..
T Consensus        62 ~~~~v~~~~~~~~~~~g~iDilVnnA   87 (256)
T d1k2wa_          62 DQASIDRCVAELLDRWGSIDILVNNA   87 (256)
T ss_dssp             CHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             CHHHHHHHHHHHHHHhCCccEEEeec
Confidence            777777666666554  577776554

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.19  E-value=0.02  Score=42.05  Aligned_cols=84  Identities=15%  Similarity=0.127  Sum_probs=50.8

Q ss_pred             cccccccccceeeeccCCCC--CCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcce
Q 031216           13 HHISQNVKAKRFISCSTNPP--QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV   90 (163)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~--~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v   90 (163)
                      +...++++.++|-- +....  -...+++|+| .|++|+.+++.+. .=++++.+ .|+... .....      ..++. 
T Consensus        21 ~~~~~~~~~~~W~~-~~~~~~~l~~k~vgiiG-~G~IG~~va~~~~-~fg~~v~~-~d~~~~-~~~~~------~~~~~-   88 (184)
T d1ygya1          21 PAADASLREHTWKR-SSFSGTEIFGKTVGVVG-LGRIGQLVAQRIA-AFGAYVVA-YDPYVS-PARAA------QLGIE-   88 (184)
T ss_dssp             HHHHHHHHTTCCCG-GGCCBCCCTTCEEEEEC-CSHHHHHHHHHHH-TTTCEEEE-ECTTSC-HHHHH------HHTCE-
T ss_pred             HHHHHHHHhCCCCc-cccccccccceeeeecc-ccchhHHHHHHhh-hccceEEe-ecCCCC-hhHHh------hcCce-
Confidence            33445555555522 11122  2347899999 7999999999887 45788874 564321 11111      11222 


Q ss_pred             eCCHHHHHhcccccCCccEEEEcc
Q 031216           91 MSDLTMVLGSISQSKARAVVIDFT  114 (163)
Q Consensus        91 ~~~l~ell~~~~~~~~~DVVIDfT  114 (163)
                      +.++++++.      +.|+|+...
T Consensus        89 ~~~l~ell~------~sDiv~~~~  106 (184)
T d1ygya1          89 LLSLDDLLA------RADFISVHL  106 (184)
T ss_dssp             ECCHHHHHH------HCSEEEECC
T ss_pred             eccHHHHHh------hCCEEEEcC
Confidence            468999996      899988554

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=95.16  E-value=0.027  Score=44.32  Aligned_cols=31  Identities=23%  Similarity=0.299  Sum_probs=25.8

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031216           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (163)
Q Consensus        37 rV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid   68 (163)
                      +|.|+|++|.+|+.+++.+.+ .+.+++++..
T Consensus         3 ~vLITGatGfiGs~lv~~Ll~-~g~~V~~~~r   33 (357)
T d1db3a_           3 VALITGVTGQDGSYLAEFLLE-KGYEVHGIKR   33 (357)
T ss_dssp             EEEEETTTSHHHHHHHHHHHH-TTCEEEEECC
T ss_pred             EEEEeCCCcHHHHHHHHHHHH-CcCEEEEEEC
Confidence            466999999999999999985 5899986543

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=95.08  E-value=0.072  Score=40.37  Aligned_cols=81  Identities=23%  Similarity=0.197  Sum_probs=49.6

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCcc---EEEE
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA---VVID  112 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~D---VVID  112 (163)
                      ..+.|.|+++++|+.+++.+. ..|.+++. ++++..  +..+.              .+++..+    ...+   +..|
T Consensus        10 K~alITGas~GIG~aia~~la-~~Ga~V~i-~~r~~~--~~~~~--------------~~~~~~~----~g~~~~~~~~D   67 (260)
T d1h5qa_          10 KTIIVTGGNRGIGLAFTRAVA-AAGANVAV-IYRSAA--DAVEV--------------TEKVGKE----FGVKTKAYQCD   67 (260)
T ss_dssp             EEEEEETTTSHHHHHHHHHHH-HTTEEEEE-EESSCT--THHHH--------------HHHHHHH----HTCCEEEEECC
T ss_pred             CEEEEeCCCCHHHHHHHHHHH-HCCCEEEE-EECCHH--HHHHH--------------HHHHHHH----hCCceEEEEcc
Confidence            468899999999999999998 57898764 554321  11111              1111110    1222   3456


Q ss_pred             ccCchhHHHHHHHHHHc--CCcEEEeCC
Q 031216          113 FTDASTVYDNVKQATAF--GMRSVVYVP  138 (163)
Q Consensus       113 fT~p~~~~~~~~~al~~--G~~vVigtt  138 (163)
                      .|.++...+.+..+.+.  ++.+++-..
T Consensus        68 v~~~~~v~~~~~~~~~~~g~iDilVnnA   95 (260)
T d1h5qa_          68 VSNTDIVTKTIQQIDADLGPISGLIANA   95 (260)
T ss_dssp             TTCHHHHHHHHHHHHHHSCSEEEEEECC
T ss_pred             CCCHHHHHHHHHHHHHHhCCCcEecccc
Confidence            77888877777666654  477776544

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=95.08  E-value=0.0085  Score=43.11  Aligned_cols=97  Identities=15%  Similarity=0.180  Sum_probs=54.8

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCccee--CCHHHHHhcccccCCccEEEEc
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAVVIDF  113 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~--~~l~ell~~~~~~~~~DVVIDf  113 (163)
                      -+|+|+|+ |.+|...++.+.. -+.+.+.++|+...-.+..+-+|..   .+.-+  .++.+.+.++. +..+|+|||+
T Consensus        30 ~~VlI~G~-G~iG~~~~~~ak~-~g~~~v~~~~~~~~k~~~a~~~Ga~---~~i~~~~~~~~~~i~~~t-~gg~D~vid~  103 (174)
T d1f8fa2          30 SSFVTWGA-GAVGLSALLAAKV-CGASIIIAVDIVESRLELAKQLGAT---HVINSKTQDPVAAIKEIT-DGGVNFALES  103 (174)
T ss_dssp             CEEEEESC-SHHHHHHHHHHHH-HTCSEEEEEESCHHHHHHHHHHTCS---EEEETTTSCHHHHHHHHT-TSCEEEEEEC
T ss_pred             CEEEEeCC-CHHHhhhhhcccc-cccceeeeeccHHHHHHHHHHcCCe---EEEeCCCcCHHHHHHHHc-CCCCcEEEEc
Confidence            56999995 9999999887764 5666777777532111112222211   11111  34444332221 1369999999


Q ss_pred             cCchhHHHHH-HHHHHcCCcEEEeCC
Q 031216          114 TDASTVYDNV-KQATAFGMRSVVYVP  138 (163)
Q Consensus       114 T~p~~~~~~~-~~al~~G~~vVigtt  138 (163)
                      +-.....+.+ ......|+-+++|.+
T Consensus       104 ~G~~~~~~~~~~~~~~~G~i~~~G~~  129 (174)
T d1f8fa2         104 TGSPEILKQGVDALGILGKIAVVGAP  129 (174)
T ss_dssp             SCCHHHHHHHHHTEEEEEEEEECCCC
T ss_pred             CCcHHHHHHHHhcccCceEEEEEeec
Confidence            9655555544 444455666677654

>d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptomyces venezuelae [TaxId: 54571]

Probab=95.06  E-value=0.2  Score=38.18  Aligned_cols=22  Identities=18%  Similarity=0.362  Sum_probs=20.6

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHh
Q 031216           36 IKVIINGAVKEIGRAAVIAVTK   57 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~   57 (163)
                      |||.|+|++|.+|+.+++.+.+
T Consensus         1 MkIlItG~tGfIG~~l~~~L~~   22 (322)
T d1r6da_           1 MRLLVTGGAGFIGSHFVRQLLA   22 (322)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHH
Confidence            6999999999999999999875

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=95.04  E-value=0.33  Score=34.72  Aligned_cols=30  Identities=20%  Similarity=0.312  Sum_probs=24.3

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~   69 (163)
                      |||+|+| .|++|-.++..+ . .+.+++ ++|.
T Consensus         1 MkI~ViG-lG~vGl~~a~~~-a-~g~~V~-g~Di   30 (196)
T d1dlja2           1 MKIAVAG-SGYVGLSLGVLL-S-LQNEVT-IVDI   30 (196)
T ss_dssp             CEEEEEC-CSHHHHHHHHHH-T-TTSEEE-EECS
T ss_pred             CEEEEEC-CChhHHHHHHHH-H-CCCcEE-EEEC
Confidence            7999999 799999887655 3 599988 4684

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.04  E-value=0.0084  Score=42.85  Aligned_cols=31  Identities=32%  Similarity=0.277  Sum_probs=24.6

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~   69 (163)
                      -+|+|+|+ |.+|...++.+. ..+.++++ +|+
T Consensus        29 ~~vlI~Ga-G~vG~~a~q~ak-~~G~~vi~-~~~   59 (168)
T d1piwa2          29 KKVGIVGL-GGIGSMGTLISK-AMGAETYV-ISR   59 (168)
T ss_dssp             CEEEEECC-SHHHHHHHHHHH-HHTCEEEE-EES
T ss_pred             CEEEEECC-CCcchhHHHHhh-hccccccc-ccc
Confidence            47999995 999998887765 56899876 554

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=95.02  E-value=0.023  Score=40.32  Aligned_cols=70  Identities=16%  Similarity=0.169  Sum_probs=42.4

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCc-EEEEEEecCC---CC--cchhhhccCCCCCCcceeCCHHHHHhcccccCCcc
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSHS---VG--EDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA  108 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~-eLvgvid~~~---~g--~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~D  108 (163)
                      .+||+|+|+ |++|..++-.+...+-. ||+ ++|...   .|  .|+.+..... ........|++++       ..+|
T Consensus         5 ~~KI~IIGa-G~VG~~~A~~l~~~~~~~elv-L~D~~~~~~~g~a~Dl~~a~~~~-~~~~~~~~d~~~~-------~~ad   74 (146)
T d1ez4a1           5 HQKVVLVGD-GAVGSSYAFAMAQQGIAEEFV-IVDVVKDRTKGDALDLEDAQAFT-APKKIYSGEYSDC-------KDAD   74 (146)
T ss_dssp             BCEEEEECC-SHHHHHHHHHHHHHTCCSEEE-EECSSHHHHHHHHHHHHGGGGGS-CCCEEEECCGGGG-------TTCS
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCcEEE-EeecccchhHHHHHHHhcccccc-CCceEeeccHHHh-------cccc
Confidence            469999995 99999999888766543 555 778532   11  1222211111 2233344677664       4899


Q ss_pred             EEEEcc
Q 031216          109 VVIDFT  114 (163)
Q Consensus       109 VVIDfT  114 (163)
                      +||..+
T Consensus        75 ivvita   80 (146)
T d1ez4a1          75 LVVITA   80 (146)
T ss_dssp             EEEECC
T ss_pred             EEEEec
Confidence            988653

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.00  E-value=0.1  Score=39.23  Aligned_cols=34  Identities=26%  Similarity=0.344  Sum_probs=28.1

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~   69 (163)
                      +..++.|.|+++++|+.+++.+. ..|.+++. +++
T Consensus         6 ~gK~~lITGas~GIG~aia~~la-~~Ga~V~~-~~r   39 (237)
T d1uzma1           6 VSRSVLVTGGNRGIGLAIAQRLA-ADGHKVAV-THR   39 (237)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHH-HTTCEEEE-EES
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEE-EEC
Confidence            44679999999999999999997 57888875 444

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=94.92  E-value=0.06  Score=40.36  Aligned_cols=34  Identities=15%  Similarity=0.179  Sum_probs=28.0

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHh--cCCcEEEEEEe
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTK--ARGMEVAGAID   68 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~--~~~~eLvgvid   68 (163)
                      |.+|.|.|+++++|+++++.+.+  ..+..|+....
T Consensus         2 MKtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r   37 (248)
T d1snya_           2 MNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCR   37 (248)
T ss_dssp             CSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEES
T ss_pred             cCEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEEC
Confidence            56799999999999999999874  57888876443

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=94.88  E-value=0.021  Score=40.97  Aligned_cols=97  Identities=16%  Similarity=0.106  Sum_probs=49.6

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCccee--CCHHHHHh---cccccCCccEE
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM--SDLTMVLG---SISQSKARAVV  110 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~--~~l~ell~---~~~~~~~~DVV  110 (163)
                      =+|.|+|+ |.+|...++.+. +-+.+-+-++|+...-.+...-+|.   ..+.-+  .++.+..+   +......+|+|
T Consensus        30 ~~VlV~Ga-G~iG~~~~~~ak-~~Ga~~Vi~~~~~~~~~~~a~~lGa---~~vi~~~~~~~~~~~~~i~~~~~~~g~Dvv  104 (182)
T d1vj0a2          30 KTVVIQGA-GPLGLFGVVIAR-SLGAENVIVIAGSPNRLKLAEEIGA---DLTLNRRETSVEERRKAIMDITHGRGADFI  104 (182)
T ss_dssp             CEEEEECC-SHHHHHHHHHHH-HTTBSEEEEEESCHHHHHHHHHTTC---SEEEETTTSCHHHHHHHHHHHTTTSCEEEE
T ss_pred             CEEEEECC-Cccchhheeccc-ccccccccccccccccccccccccc---eEEEeccccchHHHHHHHHHhhCCCCceEE
Confidence            46999996 999998888776 6687433345643211111111221   011111  23322211   11112469999


Q ss_pred             EEccCchhHHHHHHHHHHcC-CcEEEeC
Q 031216          111 IDFTDASTVYDNVKQATAFG-MRSVVYV  137 (163)
Q Consensus       111 IDfT~p~~~~~~~~~al~~G-~~vVigt  137 (163)
                      ||++-.....+.+..+++.| .=+++|.
T Consensus       105 id~vG~~~~~~~a~~~l~~~G~iv~~G~  132 (182)
T d1vj0a2         105 LEATGDSRALLEGSELLRRGGFYSVAGV  132 (182)
T ss_dssp             EECSSCTTHHHHHHHHEEEEEEEEECCC
T ss_pred             eecCCchhHHHHHHHHhcCCCEEEEEee
Confidence            99985445555555554444 4444543

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.82  E-value=0.023  Score=40.30  Aligned_cols=71  Identities=20%  Similarity=0.290  Sum_probs=42.1

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCc-EEEEEEecCC---CC--cchhhhccCCCCCCccee-CCHHHHHhcccccCC
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSHS---VG--EDIGMVCDMEQPLEIPVM-SDLTMVLGSISQSKA  106 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~-eLvgvid~~~---~g--~~~~~l~g~~~~~gi~v~-~~l~ell~~~~~~~~  106 (163)
                      +..||+|+|+ |++|..++-.+...+-. ||+ ++|...   .|  .|+.+-... ....+.++ +++++ +      .+
T Consensus         5 ~~~KI~IiGa-G~vG~~~a~~l~~~~l~~el~-L~Di~~~~~~g~a~Dl~~~~~~-~~~~~~~~~~d~~~-l------~d   74 (148)
T d1ldna1           5 GGARVVVIGA-GFVGASYVFALMNQGIADEIV-LIDANESKAIGDAMDFNHGKVF-APKPVDIWHGDYDD-C------RD   74 (148)
T ss_dssp             TSCEEEEECC-SHHHHHHHHHHHHHTCCSEEE-EECSSHHHHHHHHHHHHHHTTS-SSSCCEEEECCGGG-T------TT
T ss_pred             CCCeEEEECc-CHHHHHHHHHHHhcCCCceEE-EEeeccccccchhccHhhCccc-cCCCeEEEECCHHH-h------cc
Confidence            3468999996 99999999888765544 555 788532   11  222221111 12334444 45544 4      48


Q ss_pred             ccEEEEcc
Q 031216          107 RAVVIDFT  114 (163)
Q Consensus       107 ~DVVIDfT  114 (163)
                      .|+||...
T Consensus        75 aDvvvita   82 (148)
T d1ldna1          75 ADLVVICA   82 (148)
T ss_dssp             CSEEEECC
T ss_pred             ceeEEEec
Confidence            99988643

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.76  E-value=0.012  Score=43.00  Aligned_cols=95  Identities=20%  Similarity=0.218  Sum_probs=50.5

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCH-HHHHhcccccCCccEEEEcc
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDL-TMVLGSISQSKARAVVIDFT  114 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l-~ell~~~~~~~~~DVVIDfT  114 (163)
                      -+|.|.|++|.+|...++.+. .-+.++++...++.. .+.....|.   ..+--|++. ++.... -....+|+|+|..
T Consensus        33 ~~VLI~gaaGGVG~~aiQlak-~~Ga~Viat~~s~~k-~~~~~~lGa---~~vi~~~~~~~~~~~~-~~~~gvD~vid~v  106 (176)
T d1xa0a2          33 GPVLVTGATGGVGSLAVSMLA-KRGYTVEASTGKAAE-HDYLRVLGA---KEVLAREDVMAERIRP-LDKQRWAAAVDPV  106 (176)
T ss_dssp             CCEEESSTTSHHHHHHHHHHH-HTTCCEEEEESCTTC-HHHHHHTTC---SEEEECC----------CCSCCEEEEEECS
T ss_pred             CEEEEEeccchHHHHHHHHHH-HcCCceEEecCchHH-HHHHHhccc---ceeeecchhHHHHHHH-hhccCcCEEEEcC
Confidence            469999999999999888765 679999988765432 222222221   111112222 222211 1236899999975


Q ss_pred             CchhHHHHHHHHHHcCCc-EEEeC
Q 031216          115 DASTVYDNVKQATAFGMR-SVVYV  137 (163)
Q Consensus       115 ~p~~~~~~~~~al~~G~~-vVigt  137 (163)
                      --+. .+....+++.|=+ +++|.
T Consensus       107 gg~~-~~~~l~~l~~~Griv~~G~  129 (176)
T d1xa0a2         107 GGRT-LATVLSRMRYGGAVAVSGL  129 (176)
T ss_dssp             TTTT-HHHHHHTEEEEEEEEECSC
T ss_pred             Cchh-HHHHHHHhCCCceEEEeec
Confidence            4333 3333344444333 33443

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=94.74  E-value=0.027  Score=39.41  Aligned_cols=33  Identities=18%  Similarity=0.370  Sum_probs=25.7

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCc-EEEEEEecC
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSH   70 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~-eLvgvid~~   70 (163)
                      |||+|+|+ |++|..++..+...+-. ||+ ++|..
T Consensus         1 mKI~IIGa-G~VG~~la~~l~~~~l~~el~-L~Di~   34 (142)
T d1guza1           1 MKITVIGA-GNVGATTAFRLAEKQLARELV-LLDVV   34 (142)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEE-EECSS
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCCceEE-Eeccc
Confidence            69999996 99999998888765433 555 78853

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=94.71  E-value=0.13  Score=39.17  Aligned_cols=81  Identities=15%  Similarity=0.133  Sum_probs=49.3

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccE---EEE
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV---VID  112 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DV---VID  112 (163)
                      ..+.|.|+++.+|+.+++.+. ..|.+++.. +++.. ..+.+               +.+.+..    ...++   ..|
T Consensus         8 K~alITGas~GIG~aia~~la-~~G~~Vv~~-~r~~~-~~~~~---------------~~~~~~~----~g~~~~~~~~D   65 (261)
T d1geea_           8 KVVVITGSSTGLGKSMAIRFA-TEKAKVVVN-YRSKE-DEANS---------------VLEEIKK----VGGEAIAVKGD   65 (261)
T ss_dssp             CEEEETTCSSHHHHHHHHHHH-HTTCEEEEE-ESSCH-HHHHH---------------HHHHHHH----TTCEEEEEECC
T ss_pred             CEEEEeCCCcHHHHHHHHHHH-HCCCEEEEE-eCCcH-HHHHH---------------HHHHHHh----cCCcEEEEEcc
Confidence            358888999999999999998 568998754 43211 00111               1111111    23332   346


Q ss_pred             ccCchhHHHHHHHHHHc--CCcEEEeCC
Q 031216          113 FTDASTVYDNVKQATAF--GMRSVVYVP  138 (163)
Q Consensus       113 fT~p~~~~~~~~~al~~--G~~vVigtt  138 (163)
                      .|.++...+.+..+.+.  ++.+++-..
T Consensus        66 vt~~~~v~~~~~~~~~~~G~iDiLVnnA   93 (261)
T d1geea_          66 VTVESDVINLVQSAIKEFGKLDVMINNA   93 (261)
T ss_dssp             TTSHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             CCCHHHHHHHHHHHHHHhCCCCEeeccc
Confidence            77777777777666554  677776554

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=94.67  E-value=0.12  Score=39.18  Aligned_cols=80  Identities=23%  Similarity=0.224  Sum_probs=47.7

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCcc-EEEEcc
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~D-VVIDfT  114 (163)
                      ..+.|.|+++++|+.+++.+. ..|.+++ ++|++.  .++.++.               +.+..   ..... +..|.+
T Consensus         7 KvalITGas~GIG~aia~~la-~~Ga~V~-i~~r~~--~~~~~~~---------------~~l~~---~~~~~~~~~Dv~   64 (268)
T d2bgka1           7 KVAIITGGAGGIGETTAKLFV-RYGAKVV-IADIAD--DHGQKVC---------------NNIGS---PDVISFVHCDVT   64 (268)
T ss_dssp             CEEEEESTTSHHHHHHHHHHH-HTTCEEE-EEESCH--HHHHHHH---------------HHHCC---TTTEEEEECCTT
T ss_pred             CEEEEeCCCcHHHHHHHHHHH-HCCCEEE-EEECCH--HHHHHHH---------------HHhcC---CCceEEEEccCC
Confidence            458888999999999999987 5689876 456432  1111111               11110   01111 234777


Q ss_pred             CchhHHHHHHHHHHc--CCcEEEeC
Q 031216          115 DASTVYDNVKQATAF--GMRSVVYV  137 (163)
Q Consensus       115 ~p~~~~~~~~~al~~--G~~vVigt  137 (163)
                      .++...+.+..+.+.  ++++++-.
T Consensus        65 ~~~~v~~~~~~~~~~~g~iD~lVnn   89 (268)
T d2bgka1          65 KDEDVRNLVDTTIAKHGKLDIMFGN   89 (268)
T ss_dssp             CHHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred             CHHHHHHHHHHHHHHcCCcceeccc
Confidence            777777766666554  57777633

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.60  E-value=0.13  Score=39.00  Aligned_cols=82  Identities=15%  Similarity=0.236  Sum_probs=51.6

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccE---EEEc
Q 031216           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV---VIDF  113 (163)
Q Consensus        37 rV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DV---VIDf  113 (163)
                      .+.|.|+++++|+.+++.+. ..|..++.. +++.  .++.++              .+++-..   ..+..+   ..|.
T Consensus        12 v~lITGas~GIG~aiA~~la-~~G~~Vv~~-~r~~--~~l~~~--------------~~~l~~~---~~~~~~~~~~~Dl   70 (257)
T d1xg5a_          12 LALVTGASGGIGAAVARALV-QQGLKVVGC-ARTV--GNIEEL--------------AAECKSA---GYPGTLIPYRCDL   70 (257)
T ss_dssp             EEEEESTTSHHHHHHHHHHH-HTTCEEEEE-ESCH--HHHHHH--------------HHHHHHT---TCSSEEEEEECCT
T ss_pred             EEEEeCCCCHHHHHHHHHHH-HCCCEEEEE-ECCH--HHHHHH--------------HHHHHhc---CCCceEEEEEccC
Confidence            49999999999999999998 478998754 4431  111111              1111110   012233   3477


Q ss_pred             cCchhHHHHHHHHHHc--CCcEEEeCCC
Q 031216          114 TDASTVYDNVKQATAF--GMRSVVYVPH  139 (163)
Q Consensus       114 T~p~~~~~~~~~al~~--G~~vVigttg  139 (163)
                      +.++...+.+..+.+.  ++++++-..|
T Consensus        71 s~~~~v~~~v~~~~~~~g~iD~lVnnAg   98 (257)
T d1xg5a_          71 SNEEDILSMFSAIRSQHSGVDICINNAG   98 (257)
T ss_dssp             TCHHHHHHHHHHHHHHHCCCSEEEECCC
T ss_pred             CCHHHHHHHHHHHHHhcCCCCEEEeccc
Confidence            8888887777777665  6888876553

>d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class II ketol-acid reductoisomerase (KARI)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=94.52  E-value=0.097  Score=39.98  Aligned_cols=97  Identities=8%  Similarity=-0.014  Sum_probs=60.1

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhc-----CCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCcc
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKA-----RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA  108 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~-----~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~D  108 (163)
                      .+.||+|+| +|-=|+.++..+.++     .++.++-........++-.+-.|+. ..+..++ +++|+..      ..|
T Consensus        43 g~KkIaViG-YGsQG~AhAlNLrDSG~~~~sgv~V~VGLr~gs~S~~kA~~dGf~-v~~~~v~-~v~EAv~------~AD  113 (226)
T d1qmga2          43 GIKQIGVIG-WGSQAPAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGFS-EENGTLG-DMWETIS------GSD  113 (226)
T ss_dssp             TCSEEEEEC-CSSHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCC-GGGTCEE-EHHHHHH------TCS
T ss_pred             CCCEEEEEE-eccHHHHHHHhChhhcccccCCceEEEEeCCCChhHHHHHHcCCc-cCCCccc-CHHHHHh------hCC
Confidence            446899999 899999999999863     5677776666432223434434432 2222233 6677764      899


Q ss_pred             EEEEccCchhH----HHHHHHHHHcCCcEEEeCCCCC
Q 031216          109 VVIDFTDASTV----YDNVKQATAFGMRSVVYVPHIQ  141 (163)
Q Consensus       109 VVIDfT~p~~~----~~~~~~al~~G~~vVigttg~~  141 (163)
                      +|...+ |+..    ++.+..-++.|..+.. ..||+
T Consensus       114 iVmiLl-PDe~Q~~vy~~I~p~Lk~G~~L~F-aHGFn  148 (226)
T d1qmga2         114 LVLLLI-SDSAQADNYEKVFSHMKPNSILGL-SHGFL  148 (226)
T ss_dssp             EEEECS-CHHHHHHHHHHHHHHSCTTCEEEE-SSSHH
T ss_pred             EEEEec-chHHHHHHHHHHHHhcCCCceeee-cchhh
Confidence            988555 5443    3445556777776654 44553

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=94.50  E-value=0.097  Score=39.56  Aligned_cols=81  Identities=17%  Similarity=0.137  Sum_probs=48.0

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCcc-EEEEcc
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~D-VVIDfT  114 (163)
                      ..+.|.|+++++|+.+++.+. ..|..++ +++++.  +...++               .+.+..   ..++. +..|.+
T Consensus         7 K~alVTGas~GIG~aia~~la-~~Ga~V~-~~~r~~--~~~~~~---------------~~~~~~---~~~~~~~~~Dv~   64 (251)
T d1zk4a1           7 KVAIITGGTLGIGLAIATKFV-EEGAKVM-ITGRHS--DVGEKA---------------AKSVGT---PDQIQFFQHDSS   64 (251)
T ss_dssp             CEEEETTTTSHHHHHHHHHHH-HTTCEEE-EEESCH--HHHHHH---------------HHHHCC---TTTEEEEECCTT
T ss_pred             CEEEEeCCCCHHHHHHHHHHH-HCCCEEE-EEECCH--HHHHHH---------------HHHhCC---CCcEEEEEccCC
Confidence            458888999999999999987 5688866 456432  111111               111110   01111 235677


Q ss_pred             CchhHHHHHHHHHHc--CCcEEEeCC
Q 031216          115 DASTVYDNVKQATAF--GMRSVVYVP  138 (163)
Q Consensus       115 ~p~~~~~~~~~al~~--G~~vVigtt  138 (163)
                      .++...+.+..+.+.  ++++++-..
T Consensus        65 ~~~~v~~~~~~~~~~~G~iDiLVnnA   90 (251)
T d1zk4a1          65 DEDGWTKLFDATEKAFGPVSTLVNNA   90 (251)
T ss_dssp             CHHHHHHHHHHHHHHHSSCCEEEECC
T ss_pred             CHHHHHHHHHHHHHHhCCceEEEecc
Confidence            777777766666553  577776443

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=94.47  E-value=0.04  Score=39.02  Aligned_cols=35  Identities=23%  Similarity=0.241  Sum_probs=24.8

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHh-cCCcEEEEEEecC
Q 031216           36 IKVIINGAVKEIGRAAVIAVTK-ARGMEVAGAIDSH   70 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~-~~~~eLvgvid~~   70 (163)
                      |||+|+|++|++|+.++-.+.. .+-..=...+|..
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~   36 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIA   36 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSS
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEeccc
Confidence            6999999779999988876643 3433334477853

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=94.35  E-value=0.007  Score=44.32  Aligned_cols=34  Identities=15%  Similarity=0.198  Sum_probs=27.8

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~   69 (163)
                      +-.+|.|+|++|.+|+.+++.+.+ .+.+++. +++
T Consensus        22 ~gK~vlItGasgGIG~~ia~~la~-~G~~V~~-~~r   55 (191)
T d1luaa1          22 KGKKAVVLAGTGPVGMRSAALLAG-EGAEVVL-CGR   55 (191)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHH-TTCEEEE-EES
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHh-hccchhh-ccc
Confidence            346899999999999999999974 5788775 554

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.28  E-value=0.034  Score=40.27  Aligned_cols=96  Identities=10%  Similarity=-0.009  Sum_probs=50.4

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEE-EEEecCCCCcchhhhccCCCCCCccee--CCHHHHHhcccccCCccEEEEc
Q 031216           37 KVIINGAVKEIGRAAVIAVTKARGMEVA-GAIDSHSVGEDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAVVIDF  113 (163)
Q Consensus        37 rV~VvGa~G~mG~~i~~~i~~~~~~eLv-gvid~~~~g~~~~~l~g~~~~~gi~v~--~~l~ell~~~~~~~~~DVVIDf  113 (163)
                      .|.|.||+|.+|...++.+. .-+.+.+ ++.+++..-.......|.   ..+.-|  +++.+.+.++. ...+|+|+|.
T Consensus        33 tVLI~gaaGgVG~~aiQlak-~~Ga~~vi~~~~~~e~~~~l~~~~ga---d~vi~~~~~~~~~~~~~~~-~~GvDvv~D~  107 (187)
T d1vj1a2          33 TMVVSGAAGACGSLAGQIGH-LLGCSRVVGICGTQEKCLFLTSELGF---DAAVNYKTGNVAEQLREAC-PGGVDVYFDN  107 (187)
T ss_dssp             EEEESSTTSTTGGGHHHHHH-HTTCSEEEEEESSHHHHHHHHHHSCC---SEEEETTSSCHHHHHHHHC-TTCEEEEEES
T ss_pred             EEEEECCCchhhHHHHHHHH-HcCCcceecccchHHHHhhhhhcccc---eEEeeccchhHHHHHHHHh-ccCceEEEec
Confidence            59999999999999998875 5566544 444432110111111111   111111  34555444322 2468999988


Q ss_pred             cCchhHHHHHHHHHHcCCcEEEeC
Q 031216          114 TDASTVYDNVKQATAFGMRSVVYV  137 (163)
Q Consensus       114 T~p~~~~~~~~~al~~G~~vVigt  137 (163)
                      .-.+.....+......|.-+++|.
T Consensus       108 vGg~~~~~~~~~l~~~G~iv~~G~  131 (187)
T d1vj1a2         108 VGGDISNTVISQMNENSHIILCGQ  131 (187)
T ss_dssp             SCHHHHHHHHTTEEEEEEEEEC--
T ss_pred             CCchhHHHHhhhccccccEEEecc
Confidence            865444444443344455555554

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=94.17  E-value=0.19  Score=37.83  Aligned_cols=33  Identities=33%  Similarity=0.440  Sum_probs=26.9

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~   70 (163)
                      ..+.|.|+++++|+.+++.+. ..|.+++ +.+++
T Consensus         6 K~alITGas~GIG~aia~~la-~~G~~V~-~~~~~   38 (248)
T d2d1ya1           6 KGVLVTGGARGIGRAIAQAFA-REGALVA-LCDLR   38 (248)
T ss_dssp             CEEEEETTTSHHHHHHHHHHH-HTTCEEE-EEESS
T ss_pred             CEEEEeCCCCHHHHHHHHHHH-HCCCEEE-EEECC
Confidence            458899999999999999987 5788876 55653

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.14  E-value=0.25  Score=38.36  Aligned_cols=88  Identities=24%  Similarity=0.196  Sum_probs=52.2

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEccCc
Q 031216           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDA  116 (163)
Q Consensus        37 rV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT~p  116 (163)
                      .+.|.|+++++|+.+++.+. ..|..++ +.|+.....   .. +   .    -...++++.+++. .....+..|.+.+
T Consensus         9 valITGas~GIG~aiA~~la-~~Ga~Vv-i~d~~~~~~---~~-~---~----~~~~~~~~~~~~~-~~~~~~~~d~~~~   74 (302)
T d1gz6a_           9 VVLVTGAGGGLGRAYALAFA-ERGALVV-VNDLGGDFK---GV-G---K----GSSAADKVVEEIR-RRGGKAVANYDSV   74 (302)
T ss_dssp             EEEETTTTSHHHHHHHHHHH-HTTCEEE-EECCCBCTT---SC-B---C----CSHHHHHHHHHHH-HTTCEEEEECCCG
T ss_pred             EEEEeCCCCHHHHHHHHHHH-HcCCEEE-EEeCCchhh---hh-h---h----hHHHHHHHHHHHh-hcccccccccchH
Confidence            48888999999999999987 5788866 556432100   00 0   0    0011222221100 1345677888888


Q ss_pred             hhHHHHHHHHHHc--CCcEEEeCC
Q 031216          117 STVYDNVKQATAF--GMRSVVYVP  138 (163)
Q Consensus       117 ~~~~~~~~~al~~--G~~vVigtt  138 (163)
                      +...+.+..+++.  ++.+++-..
T Consensus        75 ~~~~~~v~~~~~~~G~iDiLVnNA   98 (302)
T d1gz6a_          75 EAGEKLVKTALDTFGRIDVVVNNA   98 (302)
T ss_dssp             GGHHHHHHHHHHHTSCCCEEEECC
T ss_pred             HHHHHHHHHHHHHcCCCCEEEECC
Confidence            8777777766654  588887544

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=94.14  E-value=0.093  Score=39.64  Aligned_cols=79  Identities=15%  Similarity=0.142  Sum_probs=49.3

Q ss_pred             eE-EEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCcc---EEEE
Q 031216           37 KV-IINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA---VVID  112 (163)
Q Consensus        37 rV-~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~D---VVID  112 (163)
                      || .|.|+++.+|+.+++.+. ..|.+|+. ++++.  .++.++              .+++-.     ...+   +..|
T Consensus         3 KValITGas~GIG~aia~~la-~~Ga~V~i-~~r~~--~~l~~~--------------~~~l~~-----~g~~~~~~~~D   59 (257)
T d2rhca1           3 EVALVTGATSGIGLEIARRLG-KEGLRVFV-CARGE--EGLRTT--------------LKELRE-----AGVEADGRTCD   59 (257)
T ss_dssp             CEEEEESCSSHHHHHHHHHHH-HTTCEEEE-EESCH--HHHHHH--------------HHHHHH-----TTCCEEEEECC
T ss_pred             CEEEEeCCCCHHHHHHHHHHH-HCCCEEEE-EECCH--HHHHHH--------------HHHHHh-----cCCcEEEEEee
Confidence            45 678999999999999987 57888764 56532  111111              111111     1223   3457


Q ss_pred             ccCchhHHHHHHHHHHc--CCcEEEeCC
Q 031216          113 FTDASTVYDNVKQATAF--GMRSVVYVP  138 (163)
Q Consensus       113 fT~p~~~~~~~~~al~~--G~~vVigtt  138 (163)
                      .|.++...+.+..+.+.  ++.+++-..
T Consensus        60 vs~~~~v~~~~~~~~~~~g~iDilVnnA   87 (257)
T d2rhca1          60 VRSVPEIEALVAAVVERYGPVDVLVNNA   87 (257)
T ss_dssp             TTCHHHHHHHHHHHHHHTCSCSEEEECC
T ss_pred             cCCHHHHHHHHHHHHHHhCCCCEEEecc
Confidence            78888888877777664  477887443

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=94.14  E-value=0.051  Score=38.78  Aligned_cols=33  Identities=6%  Similarity=0.247  Sum_probs=25.8

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~   70 (163)
                      ..||.|+| +|+.+|.++-.+.+. +.+ +-+++|+
T Consensus        18 ~k~vlIlG-aGGaarai~~al~~~-g~~-i~I~nRt   50 (170)
T d1nyta1          18 GLRILLIG-AGGASRGVLLPLLSL-DCA-VTITNRT   50 (170)
T ss_dssp             TCEEEEEC-CSHHHHHHHHHHHHT-TCE-EEEECSS
T ss_pred             CCEEEEEC-CcHHHHHHHHHhccc-ceE-EEeccch
Confidence            36899999 599999999998764 678 4466654

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=94.13  E-value=0.2  Score=37.97  Aligned_cols=79  Identities=18%  Similarity=0.235  Sum_probs=49.3

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccE---EEE
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV---VID  112 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DV---VID  112 (163)
                      .++.|.|+++.||+++++.+. ..|.+++. ++++.  .++.+.               .+.+..    ...++   ..|
T Consensus         7 K~alITGas~GIG~aia~~la-~~G~~V~i-~~r~~--~~l~~~---------------~~~~~~----~~~~~~~~~~D   63 (258)
T d1ae1a_           7 TTALVTGGSKGIGYAIVEELA-GLGARVYT-CSRNE--KELDEC---------------LEIWRE----KGLNVEGSVCD   63 (258)
T ss_dssp             CEEEEESCSSHHHHHHHHHHH-HTTCEEEE-EESCH--HHHHHH---------------HHHHHH----TTCCEEEEECC
T ss_pred             CEEEEeCCCCHHHHHHHHHHH-HCCCEEEE-EECCH--HHHHHH---------------HHHHHh----cCCCceEEEee
Confidence            579999999999999999987 57888775 45432  111111               111111    22222   467


Q ss_pred             ccCchhHHHHHHHHHHc--C-CcEEEeC
Q 031216          113 FTDASTVYDNVKQATAF--G-MRSVVYV  137 (163)
Q Consensus       113 fT~p~~~~~~~~~al~~--G-~~vVigt  137 (163)
                      ++.++...+.+..+.+.  | +.+++-.
T Consensus        64 ~s~~~~~~~~~~~~~~~~~g~idilinn   91 (258)
T d1ae1a_          64 LLSRTERDKLMQTVAHVFDGKLNILVNN   91 (258)
T ss_dssp             TTCHHHHHHHHHHHHHHTTSCCCEEEEC
T ss_pred             cCCHHHHHHHHHHHHHHhCCCcEEEecc
Confidence            88888887777666654  3 6677643

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=94.12  E-value=0.076  Score=37.41  Aligned_cols=90  Identities=17%  Similarity=0.137  Sum_probs=49.3

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCccee--CC-HHHHHhcccccCCccEEEE
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM--SD-LTMVLGSISQSKARAVVID  112 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~--~~-l~ell~~~~~~~~~DVVID  112 (163)
                      =+|+|+|+ |.+|-..+..+.. .+...+.++|+...-.+...-+|..  .-+...  ++ .++.... .....+|+++|
T Consensus        30 ~~VlI~G~-Gg~g~~~~~~~~~-~g~~~Vi~~~~~~~rl~~a~~~GAd--~~in~~~~~~~~~~~~~~-~~~~G~d~vid  104 (175)
T d1cdoa2          30 STCAVFGL-GAVGLAAVMGCHS-AGAKRIIAVDLNPDKFEKAKVFGAT--DFVNPNDHSEPISQVLSK-MTNGGVDFSLE  104 (175)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHH-TTCSEEEEECSCGGGHHHHHHTTCC--EEECGGGCSSCHHHHHHH-HHTSCBSEEEE
T ss_pred             CEEEEEec-CCccchHHHHHHH-HhhchheeecchHHHHHHHHHcCCc--EEEcCCCcchhHHHHHHh-hccCCcceeee
Confidence            35999995 8999888887775 4554455567543212222222211  111101  11 2232211 11257999999


Q ss_pred             ccCchhHHHHHHHHHHcC
Q 031216          113 FTDASTVYDNVKQATAFG  130 (163)
Q Consensus       113 fT~p~~~~~~~~~al~~G  130 (163)
                      ++-.......+..++..|
T Consensus       105 ~~G~~~~~~~a~~~~~~g  122 (175)
T d1cdoa2         105 CVGNVGVMRNALESCLKG  122 (175)
T ss_dssp             CSCCHHHHHHHHHTBCTT
T ss_pred             ecCCHHHHHHHHHHhhCC
Confidence            998777777766665554

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=94.02  E-value=0.016  Score=41.85  Aligned_cols=94  Identities=15%  Similarity=0.136  Sum_probs=55.6

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcc---cccCCccEEEEc
Q 031216           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSI---SQSKARAVVIDF  113 (163)
Q Consensus        37 rV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~---~~~~~~DVVIDf  113 (163)
                      .|.|.||+|..|...++.+. .-+.++++.+.+... .+.-.-+|      ....-+.++...+.   .....+|+|+|.
T Consensus        26 ~VLV~gaaGgVG~~avQlAk-~~Ga~Viat~~s~~k-~~~~~~lG------ad~vi~~~~~~~~~~~~~~~~gvd~vid~   97 (167)
T d1tt7a2          26 SVLVTGATGGVGGIAVSMLN-KRGYDVVASTGNREA-ADYLKQLG------ASEVISREDVYDGTLKALSKQQWQGAVDP   97 (167)
T ss_dssp             CEEEESTTSHHHHHHHHHHH-HHTCCEEEEESSSST-HHHHHHHT------CSEEEEHHHHCSSCCCSSCCCCEEEEEES
T ss_pred             EEEEeCCcchHHHHHHHHHH-HcCCceEEEecCHHH-HHHHHhhc------ccceEeccchhchhhhcccCCCceEEEec
Confidence            49999999999999988765 678999988775432 12222222      11111222221110   012469999998


Q ss_pred             cCchhHHHHHHHHHHcCCcEEEeCC
Q 031216          114 TDASTVYDNVKQATAFGMRSVVYVP  138 (163)
Q Consensus       114 T~p~~~~~~~~~al~~G~~vVigtt  138 (163)
                      --.+...+.+......|.-+++|..
T Consensus        98 vgg~~~~~~~~~l~~~G~iv~~G~~  122 (167)
T d1tt7a2          98 VGGKQLASLLSKIQYGGSVAVSGLT  122 (167)
T ss_dssp             CCTHHHHHHHTTEEEEEEEEECCCS
T ss_pred             CcHHHHHHHHHHhccCceEEEeecc
Confidence            7666555555555555555666654

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=94.01  E-value=0.043  Score=40.89  Aligned_cols=33  Identities=33%  Similarity=0.392  Sum_probs=27.5

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~   70 (163)
                      -||.|+|++|.+|+++++.+.+ .|.+++. +|+.
T Consensus         3 gkVlITGas~GIG~aia~~l~~-~G~~V~~-~~~~   35 (235)
T d1ooea_           3 GKVIVYGGKGALGSAILEFFKK-NGYTVLN-IDLS   35 (235)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHH-TTEEEEE-EESS
T ss_pred             CEEEEECCCCHHHHHHHHHHHH-CCCEEEE-EECC
Confidence            3799999999999999999984 6898764 5653

>d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: ADP-L-glycero-D-mannoheptose 6-epimerase
species: Escherichia coli [TaxId: 562]

Probab=93.95  E-value=0.17  Score=37.33  Aligned_cols=30  Identities=27%  Similarity=0.527  Sum_probs=24.3

Q ss_pred             EEEEcCCCHHHHHHHHHHHhcCCc-EEEEEEec
Q 031216           38 VIINGAVKEIGRAAVIAVTKARGM-EVAGAIDS   69 (163)
Q Consensus        38 V~VvGa~G~mG~~i~~~i~~~~~~-eLvgvid~   69 (163)
                      |.|+|++|.+|+.+++.|.+. +. ++++ +|+
T Consensus         2 ILITGgsGfIGs~lv~~L~~~-g~~~V~~-~d~   32 (307)
T d1eq2a_           2 IIVTGGAGFIGSNIVKALNDK-GITDILV-VDN   32 (307)
T ss_dssp             EEEETTTSHHHHHHHHHHHTT-TCCCEEE-EEC
T ss_pred             EEEecCccHHHHHHHHHHHhC-CCCeEEE-EEC
Confidence            789999999999999999865 54 5554 564

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=93.94  E-value=0.062  Score=38.72  Aligned_cols=36  Identities=19%  Similarity=0.281  Sum_probs=27.0

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~   70 (163)
                      +.-||+|+|+ |++|..++-.+...+-+.=..++|..
T Consensus        19 ~~~KV~IIGa-G~VG~~~A~~l~~~~l~~ElvLiD~~   54 (160)
T d1i0za1          19 PNNKITVVGV-GQVGMACAISILGKSLADELALVDVL   54 (160)
T ss_dssp             CSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEec
Confidence            3469999995 99999999888766554434488853

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=93.90  E-value=0.054  Score=38.22  Aligned_cols=71  Identities=15%  Similarity=0.139  Sum_probs=41.2

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCc-EEEEEEecCC---CC--cchhhhccCCCCCCcceeCCHHHHHhcccccCCcc
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSHS---VG--EDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA  108 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~-eLvgvid~~~---~g--~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~D  108 (163)
                      |-||+|+|+ |++|..++-.+....=+ ||+ ++|...   .|  .|+.+-........+...+++++ +      ...|
T Consensus         1 p~Ki~IIGa-G~VG~~~a~~l~~~~l~~Elv-L~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~~~~~-~------~daD   71 (143)
T d1llda1           1 PTKLAVIGA-GAVGSTLAFAAAQRGIAREIV-LEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDPEI-C------RDAD   71 (143)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCCSEEE-EECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCGGG-G------TTCS
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCcEEE-EEEeccccchhHHHHHHhccccCCCceeecCCCHHH-h------hCCc
Confidence            468999995 99999998777654433 666 788432   11  12222111111222333466665 3      3899


Q ss_pred             EEEEcc
Q 031216          109 VVIDFT  114 (163)
Q Consensus       109 VVIDfT  114 (163)
                      +||...
T Consensus        72 vVVita   77 (143)
T d1llda1          72 MVVITA   77 (143)
T ss_dssp             EEEECC
T ss_pred             EEEEec
Confidence            988653

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=93.86  E-value=0.1  Score=39.47  Aligned_cols=31  Identities=19%  Similarity=0.362  Sum_probs=25.2

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (163)
Q Consensus        37 rV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~   69 (163)
                      .+.|.|+++.||+.+++.+. ..|.+++ +.++
T Consensus         6 ~alITGas~GIG~aiA~~la-~~Ga~V~-~~~r   36 (260)
T d1x1ta1           6 VAVVTGSTSGIGLGIATALA-AQGADIV-LNGF   36 (260)
T ss_dssp             EEEETTCSSHHHHHHHHHHH-HTTCEEE-EECC
T ss_pred             EEEEeCCCCHHHHHHHHHHH-HCCCEEE-EEeC
Confidence            47788999999999999988 5788876 4444

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.85  E-value=0.03  Score=44.23  Aligned_cols=30  Identities=23%  Similarity=0.324  Sum_probs=26.6

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEE
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgv   66 (163)
                      +||.|+|++|.+|+.+++.+.+ .|.+++++
T Consensus         2 ~kILVTGatGfiG~~lv~~Ll~-~g~~V~~i   31 (393)
T d1i24a_           2 SRVMVIGGDGYCGWATALHLSK-KNYEVCIV   31 (393)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHH-CcCEEEEE
Confidence            6899999999999999999984 68998764

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.82  E-value=0.039  Score=42.04  Aligned_cols=33  Identities=15%  Similarity=0.284  Sum_probs=28.2

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~   69 (163)
                      .||.|.|++|.+|+.+++.+.+ .|.++.++...
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~-~g~~V~~~~r~   33 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLE-KGYRVHGLVAR   33 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHH-CcCEEEEEECC
Confidence            3799999999999999999975 59999877543

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=93.81  E-value=0.3  Score=36.53  Aligned_cols=79  Identities=20%  Similarity=0.191  Sum_probs=49.2

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCcc---EEEE
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA---VVID  112 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~D---VVID  112 (163)
                      ..+.|.|+++.+|+.+++.+. ..|..++. .|+... +..                  ++.++.    ...+   +..|
T Consensus         6 KvalVTGas~GIG~aia~~la-~~Ga~V~~-~~~~~~-~~~------------------~~~~~~----~g~~~~~~~~D   60 (247)
T d2ew8a1           6 KLAVITGGANGIGRAIAERFA-VEGADIAI-ADLVPA-PEA------------------EAAIRN----LGRRVLTVKCD   60 (247)
T ss_dssp             CEEEEETTTSHHHHHHHHHHH-HTTCEEEE-EESSCC-HHH------------------HHHHHH----TTCCEEEEECC
T ss_pred             CEEEEeCCCCHHHHHHHHHHH-HCCCEEEE-EECCch-HHH------------------HHHHHH----cCCcEEEEEee
Confidence            357889999999999999987 57888764 454321 111                  111111    1112   3456


Q ss_pred             ccCchhHHHHHHHHHHc--CCcEEEeCCC
Q 031216          113 FTDASTVYDNVKQATAF--GMRSVVYVPH  139 (163)
Q Consensus       113 fT~p~~~~~~~~~al~~--G~~vVigttg  139 (163)
                      .|.++.....+..+.+.  ++.+++-..|
T Consensus        61 vs~~~~v~~~~~~~~~~~G~iDilVnnAG   89 (247)
T d2ew8a1          61 VSQPGDVEAFGKQVISTFGRCDILVNNAG   89 (247)
T ss_dssp             TTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             CCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            77777777777666654  5777765543

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.68  E-value=0.067  Score=37.46  Aligned_cols=95  Identities=17%  Similarity=0.123  Sum_probs=48.0

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCccee--CCHHHHHhcccccCCccEEEEc
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAVVIDF  113 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~--~~l~ell~~~~~~~~~DVVIDf  113 (163)
                      -+|+|+|+ |.+|...++.+. .-+.+++++ |+...-.+...-+|..   .+..+  .++.+.+...  ....|.+|++
T Consensus        29 ~~VlV~Ga-G~vG~~~~~~ak-~~G~~Vi~~-~~~~~~~~~a~~~Ga~---~~i~~~~~~~~~~~~~~--~~g~~~~i~~  100 (166)
T d1llua2          29 QWVAISGI-GGLGHVAVQYAR-AMGLHVAAI-DIDDAKLELARKLGAS---LTVNARQEDPVEAIQRD--IGGAHGVLVT  100 (166)
T ss_dssp             CEEEEECC-SHHHHHHHHHHH-HTTCEEEEE-ESCHHHHHHHHHTTCS---EEEETTTSCHHHHHHHH--HSSEEEEEEC
T ss_pred             CEEEEeec-cccHHHHHHHHH-HcCCcccee-cchhhHHHhhhccCcc---ccccccchhHHHHHHHh--hcCCcccccc
Confidence            36999995 999999888776 557887765 5332111122212210   11111  2333322110  1356777777


Q ss_pred             cCchhHHHHHHHHHHc-CCcEEEeCC
Q 031216          114 TDASTVYDNVKQATAF-GMRSVVYVP  138 (163)
Q Consensus       114 T~p~~~~~~~~~al~~-G~~vVigtt  138 (163)
                      +......+.+..+++. |+-+++|.+
T Consensus       101 ~~~~~~~~~~~~~l~~~G~iv~~G~~  126 (166)
T d1llua2         101 AVSNSAFGQAIGMARRGGTIALVGLP  126 (166)
T ss_dssp             CSCHHHHHHHHTTEEEEEEEEECCCC
T ss_pred             cccchHHHHHHHHhcCCcEEEEEEec
Confidence            7544444444444443 455555543

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.67  E-value=0.064  Score=40.02  Aligned_cols=32  Identities=34%  Similarity=0.430  Sum_probs=27.2

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~   69 (163)
                      .+|.|+|++|++|+.+++.+. ..|.+++. +|+
T Consensus         3 K~vlITGas~GIG~a~a~~l~-~~G~~V~~-~~~   34 (236)
T d1dhra_           3 RRVLVYGGRGALGSRCVQAFR-ARNWWVAS-IDV   34 (236)
T ss_dssp             CEEEEETTTSHHHHHHHHHHH-TTTCEEEE-EES
T ss_pred             CEEEEECCCCHHHHHHHHHHH-HCCCEEEE-EeC
Confidence            579999999999999999997 57898874 453

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.65  E-value=0.11  Score=42.79  Aligned_cols=32  Identities=25%  Similarity=0.360  Sum_probs=27.0

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~   69 (163)
                      .||.|+|+ |.+|.++++.+. ..|+.=+-++|.
T Consensus        38 ~kVlvvG~-GglG~ei~k~L~-~~Gvg~i~lvD~   69 (426)
T d1yovb1          38 CKVLVIGA-GGLGCELLKNLA-LSGFRQIHVIDM   69 (426)
T ss_dssp             CCEEEECS-STTHHHHHHHHH-TTTCCCEEEECC
T ss_pred             CeEEEECC-CHHHHHHHHHHH-HcCCCeEEEEEC
Confidence            58999995 999999999987 678866668884

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=93.57  E-value=0.38  Score=36.20  Aligned_cols=79  Identities=19%  Similarity=0.237  Sum_probs=48.8

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCcc---EEEE
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA---VVID  112 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~D---VVID  112 (163)
                      ..+.|.|+++.+|+.+++.+. ..|..++ ++|++.  +.+.++               .+.+..    ...+   +..|
T Consensus         6 K~alITGas~GIG~aia~~la-~~Ga~V~-~~~r~~--~~l~~~---------------~~~~~~----~g~~~~~~~~D   62 (260)
T d1zema1           6 KVCLVTGAGGNIGLATALRLA-EEGTAIA-LLDMNR--EALEKA---------------EASVRE----KGVEARSYVCD   62 (260)
T ss_dssp             CEEEEETTTSHHHHHHHHHHH-HTTCEEE-EEESCH--HHHHHH---------------HHHHHT----TTSCEEEEECC
T ss_pred             CEEEEeCCCCHHHHHHHHHHH-HCCCEEE-EEECCH--HHHHHH---------------HHHHHh----cCCcEEEEEcc
Confidence            468899999999999999987 5788866 466532  111111               111111    1222   3457


Q ss_pred             ccCchhHHHHHHHHHHc--CCcEEEeC
Q 031216          113 FTDASTVYDNVKQATAF--GMRSVVYV  137 (163)
Q Consensus       113 fT~p~~~~~~~~~al~~--G~~vVigt  137 (163)
                      .+.++...+.+..+.+.  ++.+++-.
T Consensus        63 v~~~~~v~~~~~~~~~~~g~iDilVnn   89 (260)
T d1zema1          63 VTSEEAVIGTVDSVVRDFGKIDFLFNN   89 (260)
T ss_dssp             TTCHHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred             CCCHHHHHHHHHHHHHHhCCCCeehhh
Confidence            77888777777666554  57777633

>d2bw0a2 c.65.1.1 (A:1-203) 10-formyltetrahydrofolate dehydrogenase domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: 10-formyltetrahydrofolate dehydrogenase domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.57  E-value=0.028  Score=41.79  Aligned_cols=31  Identities=26%  Similarity=0.455  Sum_probs=27.8

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid   68 (163)
                      |||+++| ++..|..+++.+.+ .+.++++++.
T Consensus         1 MkI~~~G-~~~~~~~~l~~L~~-~~~~i~~V~t   31 (203)
T d2bw0a2           1 MKIAVIG-QSLFGQEVYCHLRK-EGHEVVGVFT   31 (203)
T ss_dssp             CEEEEEC-CHHHHHHHHHHHHH-TTCEEEEEEE
T ss_pred             CEEEEEc-CCHHHHHHHHHHHH-CCCcEEEEEc
Confidence            7999999 79999999999875 5899999986

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=93.55  E-value=0.19  Score=38.08  Aligned_cols=81  Identities=16%  Similarity=0.195  Sum_probs=49.3

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCcc---EEEE
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA---VVID  112 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~D---VVID  112 (163)
                      ..+.|.|+++.+|+.+++.+. ..|.+++. .+++.  .++.++              .+++-.     ....   +..|
T Consensus         9 K~alITGas~GIG~aia~~la-~~Ga~V~~-~~r~~--~~l~~~--------------~~~~~~-----~g~~~~~~~~D   65 (259)
T d2ae2a_           9 CTALVTGGSRGIGYGIVEELA-SLGASVYT-CSRNQ--KELNDC--------------LTQWRS-----KGFKVEASVCD   65 (259)
T ss_dssp             CEEEEESCSSHHHHHHHHHHH-HTTCEEEE-EESCH--HHHHHH--------------HHHHHH-----TTCEEEEEECC
T ss_pred             CEEEEeCCCCHHHHHHHHHHH-HCCCEEEE-EECCH--HHHHHH--------------HHHHHh-----cCCCceEEEee
Confidence            458899999999999999998 46888764 55432  111111              111111     1222   2456


Q ss_pred             ccCchhHHHHHHHHHHc---CCcEEEeCCC
Q 031216          113 FTDASTVYDNVKQATAF---GMRSVVYVPH  139 (163)
Q Consensus       113 fT~p~~~~~~~~~al~~---G~~vVigttg  139 (163)
                      .+.++...+.+..+.+.   .+.+++-..|
T Consensus        66 v~~~~~v~~~~~~~~~~~~~~idilvnnAG   95 (259)
T d2ae2a_          66 LSSRSERQELMNTVANHFHGKLNILVNNAG   95 (259)
T ss_dssp             TTCHHHHHHHHHHHHHHTTTCCCEEEECCC
T ss_pred             CCCHHHHHHHHHHHHHHhCCCceEEEECCc
Confidence            77788777777666543   3777775543

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=93.50  E-value=0.086  Score=39.74  Aligned_cols=79  Identities=20%  Similarity=0.358  Sum_probs=47.8

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEccCc
Q 031216           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDA  116 (163)
Q Consensus        37 rV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT~p  116 (163)
                      .+.|.|+++.+|+.+++.+. ..|.+++ +.+++.  .++.++               .+.+..    .-.-+..|.|.+
T Consensus         6 ~alITGas~GIG~a~a~~l~-~~G~~Vv-~~~r~~--~~l~~~---------------~~~~~~----~~~~~~~Dv~~~   62 (243)
T d1q7ba_           6 IALVTGASRGIGRAIAETLA-ARGAKVI-GTATSE--NGAQAI---------------SDYLGA----NGKGLMLNVTDP   62 (243)
T ss_dssp             EEEESSCSSHHHHHHHHHHH-HTTCEEE-EEESSH--HHHHHH---------------HHHHGG----GEEEEECCTTCH
T ss_pred             EEEEeCCCCHHHHHHHHHHH-HcCCEEE-EEeCCH--HHHHHH---------------HHHhCC----CCcEEEEEecCH
Confidence            57788999999999999997 5689986 455432  111111               111110    112245677777


Q ss_pred             hhHHHHHHHHHHc--CCcEEEeCC
Q 031216          117 STVYDNVKQATAF--GMRSVVYVP  138 (163)
Q Consensus       117 ~~~~~~~~~al~~--G~~vVigtt  138 (163)
                      +...+.+..+.+.  ++.+++-..
T Consensus        63 ~~v~~~~~~~~~~~g~iDilVnnA   86 (243)
T d1q7ba_          63 ASIESVLEKIRAEFGEVDILVNNA   86 (243)
T ss_dssp             HHHHHHHHHHHHHTCSCSEEEECC
T ss_pred             HHhhhhhhhhhcccCCcceehhhh
Confidence            7777766666554  477776443

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=93.49  E-value=0.061  Score=41.80  Aligned_cols=32  Identities=22%  Similarity=0.311  Sum_probs=28.7

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid   68 (163)
                      .||.|+|++|.+|+.+++.+.+ .|.++.+.++
T Consensus        12 k~VlVTG~sGfIGs~l~~~Ll~-~G~~V~~~vR   43 (342)
T d1y1pa1          12 SLVLVTGANGFVASHVVEQLLE-HGYKVRGTAR   43 (342)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEEEES
T ss_pred             CEEEEECCCCHHHHHHHHHHHH-CcCEEEEEeC
Confidence            6899999999999999999885 4899998775

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.42  E-value=0.056  Score=38.24  Aligned_cols=34  Identities=29%  Similarity=0.420  Sum_probs=26.7

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCc-EEEEEEecC
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSH   70 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~-eLvgvid~~   70 (163)
                      |||+|+||+|++|+.++-.+...+-+ ||+ ++|..
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~-L~D~~   35 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLAKEPFMKDLV-LIGRE   35 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEE-EEECG
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCcccccc-cccch
Confidence            69999998899999999988765533 555 77843

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=93.39  E-value=0.032  Score=39.97  Aligned_cols=35  Identities=29%  Similarity=0.408  Sum_probs=25.9

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~   70 (163)
                      +..||.|+| +|+++|.++..+.+ .++.-+-+++++
T Consensus        16 ~~~~vlIlG-aGGaarai~~aL~~-~g~~~I~I~nR~   50 (167)
T d1npya1          16 KNAKVIVHG-SGGMAKAVVAAFKN-SGFEKLKIYARN   50 (167)
T ss_dssp             TTSCEEEEC-SSTTHHHHHHHHHH-TTCCCEEEECSC
T ss_pred             CCCeEEEEC-CCHHHHHHHHHHHH-CCCCEEEEeccc
Confidence            346899999 59999999998875 466444466654

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=93.38  E-value=0.072  Score=40.67  Aligned_cols=107  Identities=7%  Similarity=0.121  Sum_probs=65.9

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEc
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDf  113 (163)
                      +-.+|+|-| .|++|+.+++.+. ..+..+++. |...  ..+..+..   ..+.. +.+.++++.     .++|+++=+
T Consensus        38 ~g~~v~IqG-~GnVG~~~a~~L~-~~Gakvv~~-d~~~--~~~~~~~~---~~g~~-~~~~~~~~~-----~~cDIl~Pc  103 (230)
T d1leha1          38 EGLAVSVQG-LGNVAKALCKKLN-TEGAKLVVT-DVNK--AAVSAAVA---EEGAD-AVAPNAIYG-----VTCDIFAPC  103 (230)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHH-HTTCEEEEE-CSCH--HHHHHHHH---HHCCE-ECCGGGTTT-----CCCSEEEEC
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHH-HCCCEEEee-cccH--HHHHHHHH---hcCCc-ccCCccccc-----ccccEeccc
Confidence            347899999 7999999999987 578999954 4221  11122211   11222 346778776     599999966


Q ss_pred             cCchhH-HHHHHHHHHcCCcEEEeCC--CCC-HHHHHHHHHHhhhcCeEEcC
Q 031216          114 TDASTV-YDNVKQATAFGMRSVVYVP--HIQ-LETVSALSAFCDKASMVSTG  161 (163)
Q Consensus       114 T~p~~~-~~~~~~al~~G~~vVigtt--g~~-~e~~~~L~~~A~~~~Vv~tg  161 (163)
                      ...... .+++.   +-...+|+|-.  +++ ++..    +.-++.+|++.+
T Consensus       104 A~~~~I~~~~~~---~l~ak~Ive~ANn~~t~~ea~----~~L~~rGI~~iP  148 (230)
T d1leha1         104 ALGAVLNDFTIP---QLKAKVIAGSADNQLKDPRHG----KYLHELGIVYAP  148 (230)
T ss_dssp             SCSCCBSTTHHH---HCCCSEECCSCSCCBSSHHHH----HHHHHHTCEECC
T ss_pred             ccccccChHHhh---ccCccEEEecccCCCCCchHH----HHHHhhCcEEEe
Confidence            655444 23333   44678998776  344 4443    333455777653

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=93.36  E-value=0.029  Score=39.35  Aligned_cols=32  Identities=25%  Similarity=0.305  Sum_probs=24.8

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCc-EEEEEEec
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDS   69 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~-eLvgvid~   69 (163)
                      |||+|+|+ |++|..++-.+...+-. ||+ .+|.
T Consensus         1 mKI~IIGa-G~VG~~~a~~l~~~~l~~el~-L~Di   33 (140)
T d1a5za1           1 MKIGIVGL-GRVGSSTAFALLMKGFAREMV-LIDV   33 (140)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCCSEEE-EECS
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCCCEEE-EEec
Confidence            69999995 99999988877665544 555 7884

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=93.35  E-value=0.31  Score=36.86  Aligned_cols=33  Identities=30%  Similarity=0.397  Sum_probs=27.0

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~   70 (163)
                      ..+.|.|++++||+.+++.+. ..|.+++ ++|++
T Consensus         6 K~alVTGas~GIG~aia~~la-~~Ga~V~-~~~r~   38 (254)
T d1hdca_           6 KTVIITGGARGLGAEAARQAV-AAGARVV-LADVL   38 (254)
T ss_dssp             SEEEEETTTSHHHHHHHHHHH-HTTCEEE-EEESC
T ss_pred             CEEEEeCcCCHHHHHHHHHHH-HCCCEEE-EEECC
Confidence            468999999999999999997 5689865 55643

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.30  E-value=0.048  Score=42.16  Aligned_cols=33  Identities=21%  Similarity=0.179  Sum_probs=27.9

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvi   67 (163)
                      .|.+|.|+|++|.+|+.+++.+.+ .|.++.++.
T Consensus        15 ~~k~iLVTG~tGfIGs~lv~~L~~-~g~~V~~~d   47 (341)
T d1sb8a_          15 QPKVWLITGVAGFIGSNLLETLLK-LDQKVVGLD   47 (341)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEE
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHH-CcCEEEEEE
Confidence            356899999999999999999984 688988743

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=93.29  E-value=0.058  Score=38.99  Aligned_cols=69  Identities=20%  Similarity=0.105  Sum_probs=42.3

Q ss_pred             CeeEEEEcCCCHHHHH--HHHHHHhcCC---cEEEEEEecCCC-----Ccch---hhhccCCCCCCcceeCCHHHHHhcc
Q 031216           35 NIKVIINGAVKEIGRA--AVIAVTKARG---MEVAGAIDSHSV-----GEDI---GMVCDMEQPLEIPVMSDLTMVLGSI  101 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~--i~~~i~~~~~---~eLvgvid~~~~-----g~~~---~~l~g~~~~~gi~v~~~l~ell~~~  101 (163)
                      .+||+|+|+ |..|..  ++..+...+.   -||+ .+|.+..     ..+.   ....+  .+..+..++|+++++.  
T Consensus         2 ~mKI~iIGa-Gsvg~t~~~~~~l~~~~~l~~~eiv-L~Did~~~~~~~~~~~~~~~~~~~--~~~~i~~~td~~eaL~--   75 (171)
T d1obba1           2 SVKIGIIGA-GSAVFSLRLVSDLCKTPGLSGSTVT-LMDIDEERLDAILTIAKKYVEEVG--ADLKFEKTMNLDDVII--   75 (171)
T ss_dssp             CCEEEEETT-TCHHHHHHHHHHHHTCGGGTTCEEE-EECSCHHHHHHHHHHHHHHHHHTT--CCCEEEEESCHHHHHT--
T ss_pred             CcEEEEECC-CHHHhHHHHHHHHHhccccCCCEEE-EEeCCchHHHHHHHHHHHHHHhcC--CCeEEEEeCChhhccc--
Confidence            379999995 999854  4444554444   4776 6785321     0111   11122  1345556789999985  


Q ss_pred             cccCCccEEEEc
Q 031216          102 SQSKARAVVIDF  113 (163)
Q Consensus       102 ~~~~~~DVVIDf  113 (163)
                          .+|+|+..
T Consensus        76 ----dad~Vv~~   83 (171)
T d1obba1          76 ----DADFVINT   83 (171)
T ss_dssp             ----TCSEEEEC
T ss_pred             ----CCCeEeee
Confidence                99998854

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

Probab=93.27  E-value=0.18  Score=37.61  Aligned_cols=31  Identities=23%  Similarity=0.359  Sum_probs=24.3

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCC-cEEEEE
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARG-MEVAGA   66 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~-~eLvgv   66 (163)
                      ..|.|.|+++++|+++++.+.+... ..|+..
T Consensus         4 KtilITGassGIG~a~a~~la~~G~~~~Vi~~   35 (250)
T d1yo6a1           4 GSVVVTGANRGIGLGLVQQLVKDKNIRHIIAT   35 (250)
T ss_dssp             SEEEESSCSSHHHHHHHHHHHTCTTCCEEEEE
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEE
Confidence            5689999999999999999986532 456543

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.24  E-value=0.042  Score=42.51  Aligned_cols=31  Identities=23%  Similarity=0.273  Sum_probs=26.9

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvi   67 (163)
                      .||.|+|++|.+|+.+++.+.+ .|.+++++-
T Consensus         3 kKILITG~tGfIGs~lv~~Ll~-~g~~V~~ld   33 (346)
T d1ek6a_           3 EKVLVTGGAGYIGSHTVLELLE-AGYLPVVID   33 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHH-TTCCEEEEE
T ss_pred             CeEEEECCCcHHHHHHHHHHHH-CcCEEEEEE
Confidence            4899999999999999999985 578988753

>d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.17  E-value=0.19  Score=38.52  Aligned_cols=28  Identities=18%  Similarity=0.264  Sum_probs=21.4

Q ss_pred             eEE-EEcCCCHHHHHHHHHHHhcCCcEEEE
Q 031216           37 KVI-INGAVKEIGRAAVIAVTKARGMEVAG   65 (163)
Q Consensus        37 rV~-VvGa~G~mG~~i~~~i~~~~~~eLvg   65 (163)
                      ||+ |.|+++++|+.+++.+.+ .|.+++.
T Consensus         3 kVvlITGassGIG~a~A~~la~-~Ga~v~~   31 (285)
T d1jtva_           3 TVVLITGCSSGIGLHLAVRLAS-DPSQSFK   31 (285)
T ss_dssp             EEEEESCCSSHHHHHHHHHHHT-CTTCCEE
T ss_pred             CEEEEccCCCHHHHHHHHHHHH-CCCCeEE
Confidence            565 559999999999999874 5665443

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=93.06  E-value=0.11  Score=39.24  Aligned_cols=78  Identities=28%  Similarity=0.407  Sum_probs=47.6

Q ss_pred             eE-EEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCcc---EEEE
Q 031216           37 KV-IINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA---VVID  112 (163)
Q Consensus        37 rV-~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~D---VVID  112 (163)
                      || .|.|+++++|+.+++.+.+ .|..++ +.+++.  .++.++              .+++-.     ...+   +..|
T Consensus         2 KValITGas~GIG~aia~~la~-~Ga~V~-~~~r~~--~~l~~~--------------~~~i~~-----~g~~~~~~~~D   58 (255)
T d1gega_           2 KVALVTGAGQGIGKAIALRLVK-DGFAVA-IADYND--ATAKAV--------------ASEINQ-----AGGHAVAVKVD   58 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEE-EEESCH--HHHHHH--------------HHHHHH-----TTCCEEEEECC
T ss_pred             CEEEEcCCccHHHHHHHHHHHH-CCCEEE-EEECCH--HHHHHH--------------HHHHHh-----cCCcEEEEEee
Confidence            66 6779999999999999985 688876 456532  111111              111111     1222   2357


Q ss_pred             ccCchhHHHHHHHHHHc--CCcEEEeC
Q 031216          113 FTDASTVYDNVKQATAF--GMRSVVYV  137 (163)
Q Consensus       113 fT~p~~~~~~~~~al~~--G~~vVigt  137 (163)
                      .|.++...+.+..+.+.  ++.+++-.
T Consensus        59 v~~~~~v~~~~~~~~~~~g~iDilVnn   85 (255)
T d1gega_          59 VSDRDQVFAAVEQARKTLGGFDVIVNN   85 (255)
T ss_dssp             TTSHHHHHHHHHHHHHHTTCCCEEEEC
T ss_pred             CCCHHHHHHHHHHHHHHhCCccEEEec
Confidence            77788777777766654  47777644

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.01  E-value=0.055  Score=41.58  Aligned_cols=31  Identities=26%  Similarity=0.408  Sum_probs=27.3

Q ss_pred             eE-EEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031216           37 KV-IINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (163)
Q Consensus        37 rV-~VvGa~G~mG~~i~~~i~~~~~~eLvgvid   68 (163)
                      || .|+|++|.+|+.+++.+.+ .|.+++++..
T Consensus         2 KI~LVTG~tGfIG~~l~~~Ll~-~g~~V~~i~r   33 (347)
T d1t2aa_           2 NVALITGITGQDGSYLAEFLLE-KGYEVHGIVR   33 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEEEEC
T ss_pred             CEEEEecCCcHHHHHHHHHHHH-CcCEEEEEEC
Confidence            78 7999999999999999986 6999998654

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=92.97  E-value=0.24  Score=37.73  Aligned_cols=85  Identities=24%  Similarity=0.275  Sum_probs=49.0

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCcc-EEEEcc
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~D-VVIDfT  114 (163)
                      ..+.|.|+++++|+.+++.+. ..|..++ +.|++.  .++.++.              +++...-....++. +..|.|
T Consensus         5 K~alITGas~GIG~aia~~la-~~Ga~V~-~~~r~~--~~l~~~~--------------~~i~~~~~~~~~~~~~~~Dv~   66 (274)
T d1xhla_           5 KSVIITGSSNGIGRSAAVIFA-KEGAQVT-ITGRNE--DRLEETK--------------QQILKAGVPAEKINAVVADVT   66 (274)
T ss_dssp             CEEEETTCSSHHHHHHHHHHH-HTTCEEE-EEESCH--HHHHHHH--------------HHHHHTTCCGGGEEEEECCTT
T ss_pred             CEEEEeCCCcHHHHHHHHHHH-HCCCEEE-EEECCH--HHHHHHH--------------HHHHHcCCCCcceEEEEeeCC
Confidence            468999999999999999997 5688876 456432  1111110              11111000000111 345777


Q ss_pred             CchhHHHHHHHHHHc--CCcEEEeCC
Q 031216          115 DASTVYDNVKQATAF--GMRSVVYVP  138 (163)
Q Consensus       115 ~p~~~~~~~~~al~~--G~~vVigtt  138 (163)
                      .++...+.+..+.+.  ++.+++-..
T Consensus        67 ~~~~v~~~~~~~~~~~G~iDilVnnA   92 (274)
T d1xhla_          67 EASGQDDIINTTLAKFGKIDILVNNA   92 (274)
T ss_dssp             SHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             CHHHHHHHHHHHHHHcCCceEEEeec
Confidence            888777777666554  577776443

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=92.97  E-value=0.035  Score=39.32  Aligned_cols=26  Identities=19%  Similarity=0.475  Sum_probs=22.5

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcC
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKAR   59 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~   59 (163)
                      +|+||.|+||+|++|+.++-.+...+
T Consensus         3 ~p~KV~IiGA~G~VG~~~a~~l~~~~   28 (154)
T d1y7ta1           3 APVRVAVTGAAGQIGYSLLFRIAAGE   28 (154)
T ss_dssp             CCEEEEESSTTSHHHHHHHHHHHTTT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhcc
Confidence            57999999999999999998887543

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=92.92  E-value=0.11  Score=42.37  Aligned_cols=88  Identities=17%  Similarity=0.231  Sum_probs=58.5

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCcc-EEEEcc
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~D-VVIDfT  114 (163)
                      .+|.+.|+ |.-|+..++.+. ..++++++++|.....+  ++.     -.|+||.+ .+++++. + ....+ +.|+++
T Consensus        39 ~~~~l~g~-~~~~~~~~~~~~-~~~~~v~~~~d~~~~~~--~~~-----~~g~pv~s-~~~~~~~-~-~~~~~~~~v~~~  106 (395)
T d2py6a1          39 TRLVILGT-KGFGAHLMNVRH-ERPCEVIAAVDDFRYHS--GEL-----YYGLPIIS-TDRFTEL-A-THDRDLVALNTC  106 (395)
T ss_dssp             CEEEEECS-SSTHHHHHSCSS-SCSSEEEEEECTTTTTS--CCE-----ETTEEEEC-HHHHHHH-H-HTCTTEEEEECC
T ss_pred             ceEEEEcC-chhHHHHHHHHH-HCCceEEEEecCchhhc--Cce-----ecceEeec-HHHhhhh-h-hccCcEEEEEec
Confidence            58999995 999999998875 67899999999643221  111     35788873 3332221 0 02445 666677


Q ss_pred             CchhHHHHH-HHHHHcCCcEEE
Q 031216          115 DASTVYDNV-KQATAFGMRSVV  135 (163)
Q Consensus       115 ~p~~~~~~~-~~al~~G~~vVi  135 (163)
                      .+....... ..+.+.|++.+-
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~  128 (395)
T d2py6a1         107 RYDGPKRFFDQICRTHGIPHLN  128 (395)
T ss_dssp             CSHHHHHHHHHHHHHTTCCEEE
T ss_pred             cccchhhHHHHHHHhcCCcccc
Confidence            777765544 677888998763

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.89  E-value=0.41  Score=40.23  Aligned_cols=101  Identities=13%  Similarity=0.074  Sum_probs=60.7

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC------------Ccchhh---------hccCCCCCCcc-eeCC
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV------------GEDIGM---------VCDMEQPLEIP-VMSD   93 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~------------g~~~~~---------l~g~~~~~gi~-v~~~   93 (163)
                      .||.|+| +|..|.++++.+. .+|+.=.-++|.+..            ..++++         +..+.....+. +..+
T Consensus        26 s~VlvvG-~gglG~Ei~knLv-l~GVg~itivD~d~v~~sdL~rqf~~~~~diGk~ka~~~~~~L~~lNp~v~i~~~~~~  103 (529)
T d1yova1          26 AHVCLIN-ATATGTEILKNLV-LPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFLQELNSDVSGSFVEES  103 (529)
T ss_dssp             CEEEECC-CSHHHHHHHHHHH-TTTCSEEEEECCSBCCHHHHHHCTTCCGGGTTSBHHHHHHHHHHTTCTTSBCCEESSC
T ss_pred             CCEEEEC-CCHHHHHHHHHHH-HhcCCEEEEEcCCcCChhhcCchhcCChhhCCCHHHHHHHHHHHHhCCCCcEEEEcCC
Confidence            5899999 5999999999987 688876778884311            011111         11111011222 3346


Q ss_pred             HHHHHhcc-cccCCccEEEEccCchhH-HHHHHHHHHcCCcEEEeCC
Q 031216           94 LTMVLGSI-SQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP  138 (163)
Q Consensus        94 l~ell~~~-~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigtt  138 (163)
                      +++.++.. .--..+|+||+...+... ......|.++++|+|.+-+
T Consensus       104 ~~~~~~~~~~~~~~~dvVv~~~~~~~~~~~l~~~c~~~~ip~i~~~~  150 (529)
T d1yova1         104 PENLLDNDPSFFCRFTVVVATQLPESTSLRLADVLWNSQIPLLICRT  150 (529)
T ss_dssp             HHHHHHSCGGGGGGCSEEEEESCCHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred             chhhhhhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEec
Confidence            65543310 000258999988765554 5666888899999986543

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=92.85  E-value=0.47  Score=35.73  Aligned_cols=81  Identities=23%  Similarity=0.318  Sum_probs=48.2

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCcc---EEEE
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA---VVID  112 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~D---VVID  112 (163)
                      ..+.|.|+++++|+.+++.+. ..|..++ +++++.  +.+.+.              .+++...   ..+..   +..|
T Consensus         5 K~alITGas~GIG~aia~~la-~~Ga~V~-i~~r~~--~~l~~~--------------~~~~~~~---~~~~~~~~~~~D   63 (258)
T d1iy8a_           5 RVVLITGGGSGLGRATAVRLA-AEGAKLS-LVDVSS--EGLEAS--------------KAAVLET---APDAEVLTTVAD   63 (258)
T ss_dssp             CEEEEETTTSHHHHHHHHHHH-HTTCEEE-EEESCH--HHHHHH--------------HHHHHHH---CTTCCEEEEECC
T ss_pred             CEEEEeCCCCHHHHHHHHHHH-HCCCEEE-EEECCH--HHHHHH--------------HHHHHhh---CCCCeEEEEecc
Confidence            358889999999999999988 5788866 556432  111110              1111110   01222   2347


Q ss_pred             ccCchhHHHHHHHHHHc--CCcEEEeC
Q 031216          113 FTDASTVYDNVKQATAF--GMRSVVYV  137 (163)
Q Consensus       113 fT~p~~~~~~~~~al~~--G~~vVigt  137 (163)
                      .|.++...+.+..+.+.  ++.+++-.
T Consensus        64 vt~~~~v~~~~~~~~~~~G~iDiLVnn   90 (258)
T d1iy8a_          64 VSDEAQVEAYVTATTERFGRIDGFFNN   90 (258)
T ss_dssp             TTSHHHHHHHHHHHHHHHSCCSEEEEC
T ss_pred             CCCHHHHHHHHHHHHHHhCCCCEEEEC
Confidence            78888777777666553  57777643

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=92.82  E-value=0.088  Score=37.14  Aligned_cols=68  Identities=19%  Similarity=0.126  Sum_probs=39.9

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCc-EEEEEEecCC---CC--cchhhhccCCCCCCc-ceeCCHHHHHhcccccCCcc
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSHS---VG--EDIGMVCDMEQPLEI-PVMSDLTMVLGSISQSKARA  108 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~-eLvgvid~~~---~g--~~~~~l~g~~~~~gi-~v~~~l~ell~~~~~~~~~D  108 (163)
                      .||+|+|+ |++|..++-.+....-. ||+ ++|...   .|  .|+.+..... .... ...++++++       .+.|
T Consensus         2 kKI~IIGa-G~VG~~~a~~l~~~~~~~elv-L~Di~~~~~~g~~~Dl~~a~~~~-~~~~~~~~~d~~~l-------~~ad   71 (146)
T d1hyha1           2 RKIGIIGL-GNVGAAVAHGLIAQGVADDYV-FIDANEAKVKADQIDFQDAMANL-EAHGNIVINDWAAL-------ADAD   71 (146)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCCSEEE-EECSSHHHHHHHHHHHHHHGGGS-SSCCEEEESCGGGG-------TTCS
T ss_pred             CeEEEECc-CHHHHHHHHHHHhcCCCceEE-EEecccchhhhHHHhhhcccccc-CCccceeccCHHHh-------cccc
Confidence            48999995 99999988877755433 666 788432   11  2333222111 2222 234666654       4899


Q ss_pred             EEEEc
Q 031216          109 VVIDF  113 (163)
Q Consensus       109 VVIDf  113 (163)
                      +||..
T Consensus        72 iVVit   76 (146)
T d1hyha1          72 VVIST   76 (146)
T ss_dssp             EEEEC
T ss_pred             EEEEe
Confidence            98854

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.77  E-value=0.18  Score=38.01  Aligned_cols=32  Identities=25%  Similarity=0.371  Sum_probs=26.1

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~   69 (163)
                      ..+.|.|+++.+|+.+++.+. ..|.+++ +.++
T Consensus         7 K~alITGas~GIG~aia~~la-~~G~~V~-~~~r   38 (244)
T d1nffa_           7 KVALVSGGARGMGASHVRAMV-AEGAKVV-FGDI   38 (244)
T ss_dssp             CEEEEETTTSHHHHHHHHHHH-HTTCEEE-EEES
T ss_pred             CEEEEeCCCCHHHHHHHHHHH-HCCCEEE-EEEC
Confidence            457888999999999999987 5788876 4564

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=92.73  E-value=0.48  Score=35.61  Aligned_cols=82  Identities=15%  Similarity=0.170  Sum_probs=51.0

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccE---EEE
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV---VID  112 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DV---VID  112 (163)
                      .++.|.|+++.+|+.+++.+. ..|.+++. .+++.. +.+.+               ..+.+..    ...++   ..|
T Consensus        19 K~~lITGas~GIG~aia~~la-~~Ga~Vvi-~~~~~~-~~~~~---------------~~~~~~~----~g~~~~~~~~D   76 (272)
T d1g0oa_          19 KVALVTGAGRGIGREMAMELG-RRGCKVIV-NYANST-ESAEE---------------VVAAIKK----NGSDAACVKAN   76 (272)
T ss_dssp             CEEEETTTTSHHHHHHHHHHH-HTTCEEEE-EESSCH-HHHHH---------------HHHHHHH----TTCCEEEEECC
T ss_pred             CEEEEeCCCCHHHHHHHHHHH-HcCCEEEE-EeCCch-HHHHH---------------HHHHHHh----hCCceeeEeCC
Confidence            579999999999999999998 56899874 443211 11111               1111211    23333   246


Q ss_pred             ccCchhHHHHHHHHHHc--CCcEEEeCCC
Q 031216          113 FTDASTVYDNVKQATAF--GMRSVVYVPH  139 (163)
Q Consensus       113 fT~p~~~~~~~~~al~~--G~~vVigttg  139 (163)
                      .+.++...+.+....+.  ++++++-..+
T Consensus        77 ~~~~~~v~~~~~~~~~~~g~idilV~nag  105 (272)
T d1g0oa_          77 VGVVEDIVRMFEEAVKIFGKLDIVCSNSG  105 (272)
T ss_dssp             TTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             CCCHHHHHHHHHHHHHHhCCCCccccccc
Confidence            77888887777766554  5787776653

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.53  E-value=0.21  Score=37.68  Aligned_cols=32  Identities=28%  Similarity=0.352  Sum_probs=26.7

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~   69 (163)
                      ..+.|.|+++.+|+.+++.+. ..|.+++. .|+
T Consensus         7 K~alITGas~GIG~aia~~la-~~Ga~V~i-~~r   38 (250)
T d1ydea1           7 KVVVVTGGGRGIGAGIVRAFV-NSGARVVI-CDK   38 (250)
T ss_dssp             CEEEEETCSSHHHHHHHHHHH-HTTCEEEE-EES
T ss_pred             CEEEEeCCCCHHHHHHHHHHH-HCCCEEEE-EEC
Confidence            468999999999999999997 56888774 564

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=92.49  E-value=0.21  Score=34.55  Aligned_cols=94  Identities=14%  Similarity=0.109  Sum_probs=46.9

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCccee--CCHHHHHhcccccCCccEEEEc
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAVVIDF  113 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~--~~l~ell~~~~~~~~~DVVIDf  113 (163)
                      -+|+|.|+ |.+|...++.+. ..+.++.+ ++++..-.+..+-.|..   .+.-+  +++.+.+...  ....|.+|++
T Consensus        29 ~~vlv~G~-G~iG~~a~~~a~-~~g~~v~~-~~~~~~r~~~~k~~Ga~---~~~~~~~~~~~~~~~~~--~~~~~~~v~~  100 (168)
T d1rjwa2          29 EWVAIYGI-GGLGHVAVQYAK-AMGLNVVA-VDIGDEKLELAKELGAD---LVVNPLKEDAAKFMKEK--VGGVHAAVVT  100 (168)
T ss_dssp             CEEEEECC-STTHHHHHHHHH-HTTCEEEE-ECSCHHHHHHHHHTTCS---EEECTTTSCHHHHHHHH--HSSEEEEEES
T ss_pred             CEEEEeec-ccchhhhhHHHh-cCCCeEec-cCCCHHHhhhhhhcCcc---eecccccchhhhhcccc--cCCCceEEee
Confidence            46899995 999998877765 67788664 45322111112222211   11111  2343333211  1345666666


Q ss_pred             cCchhHHHHHHHHHHcC-CcEEEeC
Q 031216          114 TDASTVYDNVKQATAFG-MRSVVYV  137 (163)
Q Consensus       114 T~p~~~~~~~~~al~~G-~~vVigt  137 (163)
                      +......+.+..+++.| +-+++|.
T Consensus       101 ~~~~~~~~~a~~~l~~~G~i~~~g~  125 (168)
T d1rjwa2         101 AVSKPAFQSAYNSIRRGGACVLVGL  125 (168)
T ss_dssp             SCCHHHHHHHHHHEEEEEEEEECCC
T ss_pred             cCCHHHHHHHHHHhccCCceEeccc
Confidence            65555555555555444 4443433

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.41  E-value=0.16  Score=38.48  Aligned_cols=81  Identities=16%  Similarity=0.172  Sum_probs=49.8

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCcc---EEE
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA---VVI  111 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~D---VVI  111 (163)
                      -..+.|.|+++.+|+.+++.+. ..|..++. ++++.  .++.+.              .+++-.     ...+   ...
T Consensus         8 gK~alVTGas~GIG~aiA~~la-~~Ga~V~~-~~r~~--~~l~~~--------------~~~~~~-----~~~~~~~~~~   64 (259)
T d1xq1a_           8 AKTVLVTGGTKGIGHAIVEEFA-GFGAVIHT-CARNE--YELNEC--------------LSKWQK-----KGFQVTGSVC   64 (259)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHH-HTTCEEEE-EESCH--HHHHHH--------------HHHHHH-----TTCCEEEEEC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHH-HCCCEEEE-EECCH--HHHHHH--------------HHHHHh-----cCCceEEEec
Confidence            3579999999999999999998 46888774 55432  111111              111111     1222   345


Q ss_pred             EccCchhHHHHHHHHHHc--C-CcEEEeCC
Q 031216          112 DFTDASTVYDNVKQATAF--G-MRSVVYVP  138 (163)
Q Consensus       112 DfT~p~~~~~~~~~al~~--G-~~vVigtt  138 (163)
                      |.+.++...+.+..+.+.  | +++++-..
T Consensus        65 Dv~~~~~v~~~~~~~~~~~~g~idilvnnA   94 (259)
T d1xq1a_          65 DASLRPEREKLMQTVSSMFGGKLDILINNL   94 (259)
T ss_dssp             CTTSHHHHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred             cCCCHHHHHHHHHHHHHHhCCCcccccccc
Confidence            677787777777666554  4 67776544

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=92.40  E-value=0.25  Score=37.51  Aligned_cols=84  Identities=21%  Similarity=0.242  Sum_probs=49.0

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhccc-ccCCcc-EEEEc
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSIS-QSKARA-VVIDF  113 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~-~~~~~D-VVIDf  113 (163)
                      ..+.|+|+++++|+.+++.+. ..|.+++ +++++.  .++.++               .+.+.+.. ...++- +..|.
T Consensus         6 K~alVTGas~GIG~aia~~la-~~Ga~V~-l~~r~~--~~l~~~---------------~~~l~~~~~~~~~~~~~~~Dv   66 (272)
T d1xkqa_           6 KTVIITGSSNGIGRTTAILFA-QEGANVT-ITGRSS--ERLEET---------------RQIILKSGVSEKQVNSVVADV   66 (272)
T ss_dssp             CEEEETTCSSHHHHHHHHHHH-HTTCEEE-EEESCH--HHHHHH---------------HHHHHTTTCCGGGEEEEECCT
T ss_pred             CEEEEeCcCcHHHHHHHHHHH-HCCCEEE-EEECCH--HHHHHH---------------HHHHHhcCCCCCceEEEEccC
Confidence            468899999999999999997 5688876 455432  111111               11111000 000111 34577


Q ss_pred             cCchhHHHHHHHHHHc--CCcEEEeCC
Q 031216          114 TDASTVYDNVKQATAF--GMRSVVYVP  138 (163)
Q Consensus       114 T~p~~~~~~~~~al~~--G~~vVigtt  138 (163)
                      |.++...+.+..+.+.  ++.+++-..
T Consensus        67 s~~~~v~~~~~~~~~~~g~iDilvnnA   93 (272)
T d1xkqa_          67 TTEDGQDQIINSTLKQFGKIDVLVNNA   93 (272)
T ss_dssp             TSHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             CCHHHHHHHHHHHHHHhCCceEEEeCC
Confidence            7888777777666654  577776543

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=92.28  E-value=0.24  Score=34.43  Aligned_cols=68  Identities=13%  Similarity=0.125  Sum_probs=41.2

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC---C--cchh---hhccCCCCCCcceeCCHHHHHhcccccCCc
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV---G--EDIG---MVCDMEQPLEIPVMSDLTMVLGSISQSKAR  107 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~---g--~~~~---~l~g~~~~~gi~v~~~l~ell~~~~~~~~~  107 (163)
                      .||+|+|+ |++|..++-.+...+-.+++ .+|....   |  .|..   .+.+.  ...+...++++++       .+.
T Consensus         2 ~KI~IIGa-G~VG~~~A~~l~~~~l~dl~-l~D~~~~~~~~~~~Dl~~~~~~~~~--~~~i~~~~d~~~~-------~~a   70 (142)
T d1uxja1           2 KKISIIGA-GFVGSTTAHWLAAKELGDIV-LLDIVEGVPQGKALDLYEASPIEGF--DVRVTGTNNYADT-------ANS   70 (142)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCSEEE-EECSSSSHHHHHHHHHHTTHHHHTC--CCCEEEESCGGGG-------TTC
T ss_pred             CeEEEECC-CHHHHHHHHHHHhCCcceEE-EEeeccccchhHHHHhhccccccCC--CCEEEecCcHHHh-------cCC
Confidence            48999995 99999998887766555855 5784321   1  1211   11111  1223335677765       389


Q ss_pred             cEEEEcc
Q 031216          108 AVVIDFT  114 (163)
Q Consensus       108 DVVIDfT  114 (163)
                      |+||...
T Consensus        71 dvvvita   77 (142)
T d1uxja1          71 DVIVVTS   77 (142)
T ss_dssp             SEEEECC
T ss_pred             CEEEEee
Confidence            9988554

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=92.19  E-value=0.31  Score=36.68  Aligned_cols=32  Identities=31%  Similarity=0.522  Sum_probs=25.8

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 031216           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (163)
Q Consensus        37 rV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~   70 (163)
                      .+.|.|+++.+|+.+++.+. ..|.+++ +++++
T Consensus         7 valVTGas~GIG~aia~~la-~~Ga~V~-~~~r~   38 (264)
T d1spxa_           7 VAIITGSSNGIGRATAVLFA-REGAKVT-ITGRH   38 (264)
T ss_dssp             EEEETTTTSHHHHHHHHHHH-HTTCEEE-EEESC
T ss_pred             EEEEeCcCCHHHHHHHHHHH-HCCCEEE-EEECC
Confidence            46788999999999999987 5689876 55653

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=92.18  E-value=0.21  Score=37.47  Aligned_cols=29  Identities=28%  Similarity=0.500  Sum_probs=24.2

Q ss_pred             EEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 031216           38 VIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (163)
Q Consensus        38 V~VvGa~G~mG~~i~~~i~~~~~~eLvgvi   67 (163)
                      |.|.|+++++|+.+++.+. ..|.+++...
T Consensus         4 ~lITGas~GIG~a~a~~la-~~Ga~V~i~~   32 (244)
T d1edoa_           4 VVVTGASRGIGKAIALSLG-KAGCKVLVNY   32 (244)
T ss_dssp             EEETTCSSHHHHHHHHHHH-HTTCEEEEEE
T ss_pred             EEEeCCCcHHHHHHHHHHH-HCCCEEEEEe
Confidence            6778999999999999988 5789887433

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.99  E-value=0.49  Score=36.48  Aligned_cols=85  Identities=16%  Similarity=0.197  Sum_probs=49.5

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCcc---EEEE
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA---VVID  112 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~D---VVID  112 (163)
                      ..+.|.|+++++|+.+++.+. ..|..|+ ++++..  .+..+.              .+++...........   +..|
T Consensus        13 KvalITGas~GIG~aia~~la-~~Ga~Vv-i~~r~~--~~l~~~--------------~~el~~~~~~~~~~~~~~~~~D   74 (297)
T d1yxma1          13 QVAIVTGGATGIGKAIVKELL-ELGSNVV-IASRKL--ERLKSA--------------ADELQANLPPTKQARVIPIQCN   74 (297)
T ss_dssp             CEEEEETTTSHHHHHHHHHHH-HTTCEEE-EEESCH--HHHHHH--------------HHHHHHTSCTTCCCCEEEEECC
T ss_pred             CEEEEeCCCCHHHHHHHHHHH-HCCCEEE-EEECCH--HHHHHH--------------HHHHHhhhccccCceEEEEecc
Confidence            458999999999999999987 4689877 455432  111111              111111000001222   2356


Q ss_pred             ccCchhHHHHHHHHHHc--CCcEEEeCC
Q 031216          113 FTDASTVYDNVKQATAF--GMRSVVYVP  138 (163)
Q Consensus       113 fT~p~~~~~~~~~al~~--G~~vVigtt  138 (163)
                      .|.++...+.+..+.+.  ++.+++-..
T Consensus        75 vs~~~~v~~~~~~~~~~~G~iDiLVnnA  102 (297)
T d1yxma1          75 IRNEEEVNNLVKSTLDTFGKINFLVNNG  102 (297)
T ss_dssp             TTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             CCCHHHHHHHHHHHHHHhCCeEEEEeec
Confidence            77888877777766554  577776443

>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Archaeal alanine dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=91.95  E-value=0.096  Score=41.36  Aligned_cols=91  Identities=10%  Similarity=-0.067  Sum_probs=56.7

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT  114 (163)
                      ..+++|+| +|..++.+++.+.....++=+-+.++..  +....+...-+..++.+..+.+++..      ..|+|+=+|
T Consensus       125 ~~~l~iiG-aG~QA~~~~~al~~~~~i~~i~v~~r~~--e~~~~~~~~~~~~~~~~~~~~~~a~~------~aDiV~taT  195 (320)
T d1omoa_         125 SSVFGFIG-CGTQAYFQLEALRRVFDIGEVKAYDVRE--KAAKKFVSYCEDRGISASVQPAEEAS------RCDVLVTTT  195 (320)
T ss_dssp             CCEEEEEC-CSHHHHHHHHHHHHHSCCCEEEEECSSH--HHHHHHHHHHHHTTCCEEECCHHHHT------SSSEEEECC
T ss_pred             ccEEEEec-CcccHHHHHHHHHHHhhhhhcccccCCH--HHHHHHHHHHHhcCCccccchhhhhc------cccEEEEec
Confidence            35799999 6999999999998877787777888642  22222221111334555567777764      899998554


Q ss_pred             CchhHHHHHHHHHHcCCcEEE
Q 031216          115 DASTVYDNVKQATAFGMRSVV  135 (163)
Q Consensus       115 ~p~~~~~~~~~al~~G~~vVi  135 (163)
                       |....-.-...++.|.||..
T Consensus       196 -~s~~P~~~~~~l~~G~hv~~  215 (320)
T d1omoa_         196 -PSRKPVVKAEWVEEGTHINA  215 (320)
T ss_dssp             -CCSSCCBCGGGCCTTCEEEE
T ss_pred             -cCcccccchhhcCCCCeEee
Confidence             32211111124678888763

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=91.93  E-value=0.096  Score=38.30  Aligned_cols=74  Identities=16%  Similarity=0.113  Sum_probs=38.9

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcc--eeCCHHHHHhcccccCCccEEEEcc
Q 031216           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP--VMSDLTMVLGSISQSKARAVVIDFT  114 (163)
Q Consensus        37 rV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~--v~~~l~ell~~~~~~~~~DVVIDfT  114 (163)
                      +|+|+|+ |.+|...+..+.. -+..-+.++|+...-.+...-.|..   .+.  .-.++.+.+.++..+..+|++||++
T Consensus        28 tVlV~Ga-G~vGl~a~~~ak~-~ga~~Vi~~d~~~~rl~~a~~~Ga~---~~~~~~~~~~~~~i~~~t~g~g~D~vid~v  102 (195)
T d1kola2          28 TVYVAGA-GPVGLAAAASARL-LGAAVVIVGDLNPARLAHAKAQGFE---IADLSLDTPLHEQIAALLGEPEVDCAVDAV  102 (195)
T ss_dssp             EEEEECC-SHHHHHHHHHHHH-TTCSEEEEEESCHHHHHHHHHTTCE---EEETTSSSCHHHHHHHHHSSSCEEEEEECC
T ss_pred             EEEEECc-CHHHHHHHHHHHh-hcccceeeecccchhhHhhhhcccc---EEEeCCCcCHHHHHHHHhCCCCcEEEEECc
Confidence            7999995 9999888777664 4554555667432101111111110   111  1133333222222246799999986


Q ss_pred             C
Q 031216          115 D  115 (163)
Q Consensus       115 ~  115 (163)
                      -
T Consensus       103 G  103 (195)
T d1kola2         103 G  103 (195)
T ss_dssp             C
T ss_pred             c
Confidence            3

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.92  E-value=0.38  Score=36.04  Aligned_cols=32  Identities=34%  Similarity=0.446  Sum_probs=25.9

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~   69 (163)
                      ..+.|.|+++++|+.+++.+. ..|.+++. +++
T Consensus         4 KvalITGas~GIG~aia~~la-~~Ga~V~i-~~r   35 (254)
T d2gdza1           4 KVALVTGAAQGIGRAFAEALL-LKGAKVAL-VDW   35 (254)
T ss_dssp             CEEEEETTTSHHHHHHHHHHH-HTTCEEEE-EES
T ss_pred             CEEEEeCCCCHHHHHHHHHHH-HCCCEEEE-EEC
Confidence            347888999999999999997 57888764 554

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=91.89  E-value=0.16  Score=38.41  Aligned_cols=81  Identities=19%  Similarity=0.151  Sum_probs=49.6

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCcc---EEEE
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA---VVID  112 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~D---VVID  112 (163)
                      ..+.|.|+++++|+.+++.+. ..|..++. .+++.  .++.++              .+++-+     ...+   +..|
T Consensus        12 K~alITGas~GIG~aia~~la-~~Ga~V~~-~~r~~--~~~~~~--------------~~~l~~-----~g~~~~~~~~D   68 (255)
T d1fmca_          12 KCAIITGAGAGIGKEIAITFA-TAGASVVV-SDINA--DAANHV--------------VDEIQQ-----LGGQAFACRCD   68 (255)
T ss_dssp             CEEEETTTTSHHHHHHHHHHH-TTTCEEEE-EESCH--HHHHHH--------------HHHHHH-----TTCCEEEEECC
T ss_pred             CEEEEeCCCcHHHHHHHHHHH-HCCCEEEE-EECCH--HHHHHH--------------HHHHHH-----cCCcEEEEEcc
Confidence            468899999999999999987 67898774 45432  111111              111111     1222   3456


Q ss_pred             ccCchhHHHHHHHHHHc--CCcEEEeCCC
Q 031216          113 FTDASTVYDNVKQATAF--GMRSVVYVPH  139 (163)
Q Consensus       113 fT~p~~~~~~~~~al~~--G~~vVigttg  139 (163)
                      .|.++...+.+..+.+.  ++++++-..|
T Consensus        69 vs~~~~~~~~~~~~~~~~g~iDilvnnAG   97 (255)
T d1fmca_          69 ITSEQELSALADFAISKLGKVDILVNNAG   97 (255)
T ss_dssp             TTCHHHHHHHHHHHHHHHSSCCEEEECCC
T ss_pred             CCCHHHHHHHHHHHHHHcCCCCEeeeCCc
Confidence            67777777766666554  5777765543

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.69  E-value=0.22  Score=36.75  Aligned_cols=85  Identities=20%  Similarity=0.225  Sum_probs=54.4

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT  114 (163)
                      ..+|+|+| +|-=|+.++..+. ..+++++-........++.++.      .|..+ -+++|+..      ..|+|...+
T Consensus        16 ~k~IaViG-YGsQG~AhAlNLr-DSG~~V~VGLr~gs~s~~~A~~------~Gf~v-~~~~eA~~------~aDiim~L~   80 (182)
T d1np3a2          16 GKKVAIIG-YGSQGHAHACNLK-DSGVDVTVGLRSGSATVAKAEA------HGLKV-ADVKTAVA------AADVVMILT   80 (182)
T ss_dssp             TSCEEEEC-CSHHHHHHHHHHH-HTTCCEEEECCTTCHHHHHHHH------TTCEE-ECHHHHHH------TCSEEEECS
T ss_pred             CCEEEEEe-eCcHhHHHHhhhh-hcCCCEEEEcCCCCccHHHHhh------hcccc-ccHHHHhh------hcCeeeeec
Confidence            46899999 8999999999987 6789887665532211222222      23334 47888875      899988444


Q ss_pred             CchhHH-----HHHHHHHHcCCcEEE
Q 031216          115 DASTVY-----DNVKQATAFGMRSVV  135 (163)
Q Consensus       115 ~p~~~~-----~~~~~al~~G~~vVi  135 (163)
                       |+..-     +.+...++.|.-+..
T Consensus        81 -PD~~q~~vy~~~I~p~lk~g~~L~F  105 (182)
T d1np3a2          81 -PDEFQGRLYKEEIEPNLKKGATLAF  105 (182)
T ss_dssp             -CHHHHHHHHHHHTGGGCCTTCEEEE
T ss_pred             -chHHHHHHHHHhhhhhcCCCcEEEE
Confidence             55442     344445666665543

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=91.50  E-value=0.14  Score=38.64  Aligned_cols=32  Identities=22%  Similarity=0.314  Sum_probs=26.1

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~   69 (163)
                      ..+.|.|+++.+|+.+++.+. ..|.+++ +.|+
T Consensus         7 K~alITGas~GIG~aia~~la-~~Ga~V~-~~~~   38 (253)
T d1hxha_           7 KVALVTGGASGVGLEVVKLLL-GEGAKVA-FSDI   38 (253)
T ss_dssp             CEEEETTTTSHHHHHHHHHHH-HTTCEEE-EECS
T ss_pred             CEEEEeCCCCHHHHHHHHHHH-HCCCEEE-EEEC
Confidence            457888999999999999988 5788866 4564

>d2csua2 c.23.4.1 (A:130-290) Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Succinyl-CoA synthetase domains
family: Succinyl-CoA synthetase domains
domain: Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=91.42  E-value=1  Score=31.92  Aligned_cols=108  Identities=8%  Similarity=0.108  Sum_probs=69.5

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEc-
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF-  113 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDf-  113 (163)
                      +=+|+++.=+|.++..++..+. ..++-+.-.+..   |.+          .+    .+..++++.+.++++..+|+-+ 
T Consensus        20 ~G~valiSqSG~l~~~~~~~~~-~~g~G~s~~vs~---Gn~----------~~----~~~~d~l~~l~~D~~t~~i~l~~   81 (161)
T d2csua2          20 KGNVAFISQSGALGAGIVYKTI-KEDIGFSKFISV---GNM----------AD----VDFAELMEYLADTEEDKAIALYI   81 (161)
T ss_dssp             ECSEEEEESCHHHHHHHHHHHH-HTTCEESEEEEC---TTC----------CS----SCHHHHHHHHTTCSSCCEEEEEE
T ss_pred             CCCEEEEECCHHHHHHHHHHHH-hCCCCeeEEEec---CCc----------cc----cCHHHHHHHHhcCCCCcEEEEEe
Confidence            4579999999999999988776 457776655552   211          11    1344444444446777777655 


Q ss_pred             ---cCchhHHHHHHHHHHcCCcEEEeCCCCCHH--------------HHHHHHHHhhhcCeEEcC
Q 031216          114 ---TDASTVYDNVKQATAFGMRSVVYVPHIQLE--------------TVSALSAFCDKASMVSTG  161 (163)
Q Consensus       114 ---T~p~~~~~~~~~al~~G~~vVigttg~~~e--------------~~~~L~~~A~~~~Vv~tg  161 (163)
                         ..|+...+.++.+. .+||+|+-+.|-++.              ..+..+++.++.||+..-
T Consensus        82 E~~~~~~~f~~~~r~~~-~~Kpvv~~k~G~s~~g~~aa~sHtga~ag~~~~~~a~~~~aGvi~v~  145 (161)
T d2csua2          82 EGVRNGKKFMEVAKRVT-KKKPIIALKAGKSESGARAASSHTGSLAGSWKIYEAAFKQSGVLVAN  145 (161)
T ss_dssp             SCCSCHHHHHHHHHHHH-HHSCEEEEECC------------------CHHHHHHHHHHTTCEEES
T ss_pred             cCCcCHHHHHHHHHHHh-ccCCeeEEEeecccccccccccccccccccHHHHHHHHHHCCceEeC
Confidence               36777788887764 568999877654322              223466778888887653

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=91.41  E-value=0.53  Score=35.02  Aligned_cols=80  Identities=18%  Similarity=0.239  Sum_probs=45.7

Q ss_pred             EEEEcCCCHHHHHHHHHHHhcCCcE------EEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCcc---
Q 031216           38 VIINGAVKEIGRAAVIAVTKARGME------VAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA---  108 (163)
Q Consensus        38 V~VvGa~G~mG~~i~~~i~~~~~~e------Lvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~D---  108 (163)
                      |.|.|+++++|+.+++.+.+ .|.+      .+..+++..  .++.++               .+.+..    ....   
T Consensus         4 vlITGas~GIG~aia~~la~-~G~~~~~~~~~v~~~~r~~--~~l~~~---------------~~~~~~----~g~~~~~   61 (240)
T d2bd0a1           4 LLITGAGKGIGRAIALEFAR-AARHHPDFEPVLVLSSRTA--ADLEKI---------------SLECRA----EGALTDT   61 (240)
T ss_dssp             EEEETTTSHHHHHHHHHHHH-HTTTCTTCCEEEEEEESCH--HHHHHH---------------HHHHHT----TTCEEEE
T ss_pred             EEEccCCCHHHHHHHHHHHH-hCccccccCcEEEEEeCCH--HHHHHH---------------HHHHHh----cCCcEEE
Confidence            46889999999999999874 4544      344555432  111111               111111    1222   


Q ss_pred             EEEEccCchhHHHHHHHHHHc--CCcEEEeCCC
Q 031216          109 VVIDFTDASTVYDNVKQATAF--GMRSVVYVPH  139 (163)
Q Consensus       109 VVIDfT~p~~~~~~~~~al~~--G~~vVigttg  139 (163)
                      +..|.|.++...+.+..+.+.  ++.+++-..|
T Consensus        62 ~~~Dvt~~~~v~~~~~~~~~~~g~iDilvnnAg   94 (240)
T d2bd0a1          62 ITADISDMADVRRLTTHIVERYGHIDCLVNNAG   94 (240)
T ss_dssp             EECCTTSHHHHHHHHHHHHHHTSCCSEEEECCC
T ss_pred             EEecCCCHHHHHHHHHHHHHHcCCcceeecccc
Confidence            234677777777777666554  4777765543

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=91.40  E-value=0.25  Score=36.67  Aligned_cols=69  Identities=19%  Similarity=0.229  Sum_probs=43.0

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEc
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDf  113 (163)
                      .++.|.|+++.+|+.+++.+. ..|.+++. ++++.  +.+.+ .+.. .....+.+++++++++.   .++|++|..
T Consensus         5 K~~lVTGas~GIG~aia~~l~-~~Ga~V~~-~~r~~--~~l~~-~~~~-~~~~Dv~~~~~~~~~~~---g~iD~lVnn   73 (234)
T d1o5ia_           5 KGVLVLAASRGIGRAVADVLS-QEGAEVTI-CARNE--ELLKR-SGHR-YVVCDLRKDLDLLFEKV---KEVDILVLN   73 (234)
T ss_dssp             CEEEEESCSSHHHHHHHHHHH-HTTCEEEE-EESCH--HHHHH-TCSE-EEECCTTTCHHHHHHHS---CCCSEEEEC
T ss_pred             CEEEEeCCCcHHHHHHHHHHH-HCCCEEEE-EECCH--HHHHh-cCCc-EEEcchHHHHHHHHHHh---CCCcEEEec
Confidence            579999999999999999987 56888764 55432  11111 1100 00111235667776653   579998865

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=91.26  E-value=0.23  Score=34.63  Aligned_cols=32  Identities=31%  Similarity=0.363  Sum_probs=24.9

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCc-EEEEEEec
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDS   69 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~-eLvgvid~   69 (163)
                      -||+|+|+ |++|..++-.+...+-. ||+ ++|.
T Consensus         2 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~-L~D~   34 (142)
T d1y6ja1           2 SKVAIIGA-GFVGASAAFTMALRQTANELV-LIDV   34 (142)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHTTCSSEEE-EECC
T ss_pred             CeEEEECC-CHHHHHHHHHHHhcCCCCEEE-EEec
Confidence            48999996 99999999887765544 555 7884

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=91.15  E-value=0.23  Score=37.33  Aligned_cols=82  Identities=22%  Similarity=0.229  Sum_probs=49.7

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCcc---EEEE
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA---VVID  112 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~D---VVID  112 (163)
                      ..+.|.|+++.+|+++++.+. ..|.+++...++...  ...+               ..+.+..    ...+   +..|
T Consensus         7 K~alITGas~GIG~aia~~la-~~G~~Vvi~~~~~~~--~~~~---------------~~~~~~~----~g~~~~~~~~D   64 (259)
T d1ja9a_           7 KVALTTGAGRGIGRGIAIELG-RRGASVVVNYGSSSK--AAEE---------------VVAELKK----LGAQGVAIQAD   64 (259)
T ss_dssp             CEEEETTTTSHHHHHHHHHHH-HTTCEEEEEESSCHH--HHHH---------------HHHHHHH----TTCCEEEEECC
T ss_pred             CEEEEeCCCCHHHHHHHHHHH-HcCCEEEEEcCCChH--HHHH---------------HHHHHHH----cCCCceEecCC
Confidence            468999999999999999987 578998754444321  1111               1111211    2223   3456


Q ss_pred             ccCchhHHHHHHHHHHc--CCcEEEeCCC
Q 031216          113 FTDASTVYDNVKQATAF--GMRSVVYVPH  139 (163)
Q Consensus       113 fT~p~~~~~~~~~al~~--G~~vVigttg  139 (163)
                      ++.++...+.+..+.+.  ++.+++-..|
T Consensus        65 ~~~~~~v~~~~~~~~~~~g~idilinnag   93 (259)
T d1ja9a_          65 ISKPSEVVALFDKAVSHFGGLDFVMSNSG   93 (259)
T ss_dssp             TTSHHHHHHHHHHHHHHHSCEEEEECCCC
T ss_pred             CCCHHHHHHHHHHHHHHcCCCcEEEeccc
Confidence            77787777666655443  5676765543

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=91.13  E-value=0.071  Score=38.28  Aligned_cols=36  Identities=11%  Similarity=0.220  Sum_probs=26.7

Q ss_pred             CCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 031216           32 PQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (163)
Q Consensus        32 ~~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~   70 (163)
                      .....+|.|+| +|++++.++..+.+ ..-++. ++.|+
T Consensus        15 ~~~~k~vlIlG-aGGaarai~~aL~~-~~~~i~-I~nR~   50 (171)
T d1p77a1          15 LRPNQHVLILG-AGGATKGVLLPLLQ-AQQNIV-LANRT   50 (171)
T ss_dssp             CCTTCEEEEEC-CSHHHHTTHHHHHH-TTCEEE-EEESS
T ss_pred             CCCCCEEEEEC-CcHHHHHHHHHHcc-cCceee-eccch
Confidence            33456899999 59999999998875 446755 55654

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=90.93  E-value=0.093  Score=37.79  Aligned_cols=97  Identities=6%  Similarity=0.034  Sum_probs=51.9

Q ss_pred             EEEE-cCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhh---ccCCCCCCcceeC-----CHHHHHhccc--ccCC
Q 031216           38 VIIN-GAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMV---CDMEQPLEIPVMS-----DLTMVLGSIS--QSKA  106 (163)
Q Consensus        38 V~Vv-Ga~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l---~g~~~~~gi~v~~-----~l~ell~~~~--~~~~  106 (163)
                      |.|+ |++|.+|...++.+. .-+++++++++++..-.+..+.   +|.   ..+..++     ++.+.+.++.  ....
T Consensus        32 vli~~ga~g~vG~~aiqlAk-~~Ga~vI~~v~~~~~~~~~~~~~~~lGa---d~vi~~~~~~~~~~~~~v~~~~~~~g~~  107 (189)
T d1gu7a2          32 WFIQNGGTSAVGKYASQIGK-LLNFNSISVIRDRPNLDEVVASLKELGA---TQVITEDQNNSREFGPTIKEWIKQSGGE  107 (189)
T ss_dssp             EEEESCTTSHHHHHHHHHHH-HHTCEEEEEECCCTTHHHHHHHHHHHTC---SEEEEHHHHHCGGGHHHHHHHHHHHTCC
T ss_pred             EEEEeCCCchHHHHHHHHHh-hcCCeEEEEEecccccchHHhhhhhccc---cEEEeccccchhHHHHHHHHHHhhccCC
Confidence            6675 778999999988776 5699999988753211111111   111   1111111     1111111000  1246


Q ss_pred             ccEEEEccCchhHHHHHHHHHHcCCcEEEeCC
Q 031216          107 RAVVIDFTDASTVYDNVKQATAFGMRSVVYVP  138 (163)
Q Consensus       107 ~DVVIDfT~p~~~~~~~~~al~~G~~vVigtt  138 (163)
                      +|+++|+.-.+.....+......|.-|++|..
T Consensus       108 vdvv~D~vg~~~~~~~~~~l~~~G~~v~~G~~  139 (189)
T d1gu7a2         108 AKLALNCVGGKSSTGIARKLNNNGLMLTYGGM  139 (189)
T ss_dssp             EEEEEESSCHHHHHHHHHTSCTTCEEEECCCC
T ss_pred             ceEEEECCCcchhhhhhhhhcCCcEEEEECCc
Confidence            99999988766655555444445555555643

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=90.91  E-value=0.31  Score=34.74  Aligned_cols=35  Identities=9%  Similarity=0.087  Sum_probs=27.3

Q ss_pred             CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 031216           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~   70 (163)
                      +..+|.|+| +|.+||.++..+.+. +.+-+-+++++
T Consensus        17 ~~k~vlIlG-aGGaarai~~al~~~-g~~~i~i~nR~   51 (182)
T d1vi2a1          17 KGKTMVLLG-AGGASTAIGAQGAIE-GLKEIKLFNRR   51 (182)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHT-TCSEEEEEECS
T ss_pred             CCCEEEEEC-CcHHHHHHHHHHhhc-CCceEeeeccc
Confidence            346899999 599999999888865 67666677754

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=90.89  E-value=0.19  Score=31.98  Aligned_cols=32  Identities=22%  Similarity=0.204  Sum_probs=25.7

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~   69 (163)
                      |.+|+|+| +|..||+++..... =|+++. ++|+
T Consensus         1 ~k~vgIlG-~GQLgrMl~~Aa~~-LG~~v~-vldp   32 (78)
T d3etja2           1 MKQVCVLG-NGQLGRMLRQAGEP-LGIAVW-PVGL   32 (78)
T ss_dssp             CEEEEEEB-CSHHHHHHHHHHGG-GTEEEE-EECT
T ss_pred             CCEEEEEc-CCHHHHHHHHHHHH-cCCEEE-EEcC
Confidence            57899999 69999999988764 578877 4554

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=90.83  E-value=0.32  Score=33.38  Aligned_cols=101  Identities=13%  Similarity=0.122  Sum_probs=53.1

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC--CcchhhhccCCCCCCcce-eC---CH---HHHHhcccccCCc
Q 031216           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV--GEDIGMVCDMEQPLEIPV-MS---DL---TMVLGSISQSKAR  107 (163)
Q Consensus        37 rV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~--g~~~~~l~g~~~~~gi~v-~~---~l---~ell~~~~~~~~~  107 (163)
                      .|.|+| .|++|+.+++.+.+ .+.+++. ++....  -....++.    ..++.+ +.   +.   +++--     .++
T Consensus         5 HiII~G-~g~~g~~l~~~L~~-~~~~v~v-Id~d~~~~~~~~~~~~----~~~~~vi~Gd~~d~~~L~~a~i-----~~a   72 (153)
T d1id1a_           5 HFIVCG-HSILAINTILQLNQ-RGQNVTV-ISNLPEDDIKQLEQRL----GDNADVIPGDSNDSSVLKKAGI-----DRC   72 (153)
T ss_dssp             CEEEEC-CSHHHHHHHHHHHH-TTCCEEE-EECCCHHHHHHHHHHH----CTTCEEEESCTTSHHHHHHHTT-----TTC
T ss_pred             EEEEEC-CCHHHHHHHHHHHH-cCCCEEE-EeccchhHHHHHHHhh----cCCcEEEEccCcchHHHHHhcc-----ccC
Confidence            589999 69999999999975 4777775 443210  01111211    234443 32   22   23222     478


Q ss_pred             cEEEEccCchhH-HHHHHHHHHc--CCcEEEeCCCCCHHHHHHHHHH
Q 031216          108 AVVIDFTDASTV-YDNVKQATAF--GMRSVVYVPHIQLETVSALSAF  151 (163)
Q Consensus       108 DVVIDfT~p~~~-~~~~~~al~~--G~~vVigttg~~~e~~~~L~~~  151 (163)
                      |++|-.|..+.. ...+..+.+.  .+++|.-.  .+++..+.|.++
T Consensus        73 ~~vi~~~~~d~~n~~~~~~~r~~~~~~~iia~~--~~~~~~~~l~~~  117 (153)
T d1id1a_          73 RAILALSDNDADNAFVVLSAKDMSSDVKTVLAV--SDSKNLNKIKMV  117 (153)
T ss_dssp             SEEEECSSCHHHHHHHHHHHHHHTSSSCEEEEC--SSGGGHHHHHTT
T ss_pred             CEEEEccccHHHHHHHHHHHHHhCCCCceEEEE--cCHHHHHHHHHC
Confidence            888845533332 3333444443  34565533  445555555443

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=90.63  E-value=0.28  Score=36.88  Aligned_cols=31  Identities=23%  Similarity=0.314  Sum_probs=25.0

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (163)
Q Consensus        37 rV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~   69 (163)
                      -+.|.|+++++|+.+++.+. ..|.+++ ++++
T Consensus        12 valITGas~GIG~a~a~~la-~~Ga~V~-~~~r   42 (251)
T d2c07a1          12 VALVTGAGRGIGREIAKMLA-KSVSHVI-CISR   42 (251)
T ss_dssp             EEEEESTTSHHHHHHHHHHT-TTSSEEE-EEES
T ss_pred             EEEEeCCCCHHHHHHHHHHH-HcCCEEE-EEEC
Confidence            46677999999999999987 6788876 4564

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=90.58  E-value=0.1  Score=37.85  Aligned_cols=33  Identities=15%  Similarity=0.213  Sum_probs=26.4

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~   70 (163)
                      .-||+|+|+ |.||+.++..+. ..|++++ ++|+.
T Consensus         4 I~~vaViGa-G~mG~~iA~~~a-~~G~~V~-l~D~~   36 (186)
T d1wdka3           4 VKQAAVLGA-GIMGGGIAYQSA-SKGTPIL-MKDIN   36 (186)
T ss_dssp             CSSEEEECC-HHHHHHHHHHHH-HTTCCEE-EECSS
T ss_pred             CCEEEEECc-CHHHHHHHHHHH-hCCCeEE-EEECC
Confidence            357999995 999999998776 5689977 67753

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=90.25  E-value=0.23  Score=37.08  Aligned_cols=30  Identities=27%  Similarity=0.467  Sum_probs=25.5

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEE
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgv   66 (163)
                      ..+.|.|+++.+|+.+++.+. ..|++++..
T Consensus         6 K~alItGas~GIG~aia~~l~-~~G~~V~~~   35 (241)
T d2a4ka1           6 KTILVTGAASGIGRAALDLFA-REGASLVAV   35 (241)
T ss_dssp             CEEEEESTTSHHHHHHHHHHH-HTTCEEEEE
T ss_pred             CEEEEeCCCCHHHHHHHHHHH-HCCCEEEEE
Confidence            457888999999999999987 578998754

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=90.17  E-value=0.18  Score=36.68  Aligned_cols=58  Identities=28%  Similarity=0.547  Sum_probs=39.7

Q ss_pred             ccceeeecccccccccccceeeeccCCCCC------------CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216            4 LGCQFHCRMHHISQNVKAKRFISCSTNPPQ------------SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (163)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~   69 (163)
                      .||..-| |.    +.-..+-++|+-||..            .+.||+|+| .|-.|-+.+..+. ..+++++ +++.
T Consensus         5 i~C~~~C-~~----~~~~~~~~~C~~Np~~g~e~~~~~~~~~~~k~V~IIG-aGPAGL~AA~~la-~~G~~Vt-l~E~   74 (179)
T d1ps9a3           5 IGCNQAC-LD----QIFVGKVTSCLVNPRACHETKMPILPAVQKKNLAVVG-AGPAGLAFAINAA-ARGHQVT-LFDA   74 (179)
T ss_dssp             CCCCTTT-HH----HHHTTCCCCCSSCTTTTCTTTSCCCSCSSCCEEEEEC-CSHHHHHHHHHHH-TTTCEEE-EEES
T ss_pred             cccHHHH-hh----HhhcCCeeEEeeCccccCccccccCCCCCCcEEEEEC-ccHHHHHHHHHHH-hhccceE-EEec
Confidence            4676656 11    2222345567776543            468999999 4999999998886 6788887 6774

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=90.13  E-value=0.44  Score=33.44  Aligned_cols=34  Identities=18%  Similarity=0.251  Sum_probs=26.3

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~   70 (163)
                      +.||.|+|+ |+.|..++-.+...+=.||+ ++|..
T Consensus         3 ~~KI~IIGa-G~VG~~~a~~l~~~~l~el~-L~Di~   36 (150)
T d1t2da1           3 KAKIVLVGS-GMIGGVMATLIVQKNLGDVV-LFDIV   36 (150)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCCEEE-EECSS
T ss_pred             CCeEEEECC-CHHHHHHHHHHHhCCCCeEE-EEecc
Confidence            369999995 99999998777766545755 88853

>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Ornithine cyclodeaminase
species: Pseudomonas putida [TaxId: 303]

Probab=90.07  E-value=0.25  Score=39.57  Aligned_cols=90  Identities=13%  Similarity=0.115  Sum_probs=57.7

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhcc-CCCCCCc--ceeCCHHHHHhcccccCCccEEEE
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCD-MEQPLEI--PVMSDLTMVLGSISQSKARAVVID  112 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g-~~~~~gi--~v~~~l~ell~~~~~~~~~DVVID  112 (163)
                      -+++|+| +|..++.+++.+....+++=+-+.+++..  ....+.. +....|+  .+.+|+++++.      ..|+|+-
T Consensus       129 ~~l~iiG-~G~QA~~~~~a~~~v~~i~~V~v~~r~~~--~~~~~~~~l~~~~g~~v~~~~s~~eav~------~ADIi~t  199 (340)
T d1x7da_         129 RKMALIG-NGAQSEFQALAFHKHLGIEEIVAYDTDPL--ATAKLIANLKEYSGLTIRRASSVAEAVK------GVDIITT  199 (340)
T ss_dssp             CEEEEEC-CSTTHHHHHHHHHHHSCCCEEEEECSSHH--HHHHHHHHHTTCTTCEEEECSSHHHHHT------TCSEEEE
T ss_pred             ceEEEEc-ccHHHHHHHHHHhhhcceeeeEEEecChH--HHHHHHHhhhhccCCCceecCCHHHHHh------cCCceee
Confidence            4799999 69999999999988888888888886531  1111211 1112344  45799999985      8999886


Q ss_pred             ccCchhHHHHH-HHHHHcCCcEE
Q 031216          113 FTDASTVYDNV-KQATAFGMRSV  134 (163)
Q Consensus       113 fT~p~~~~~~~-~~al~~G~~vV  134 (163)
                      +|......+.+ ...++.|.||.
T Consensus       200 ~Tas~s~~Pv~~~~~l~pG~hI~  222 (340)
T d1x7da_         200 VTADKAYATIITPDMLEPGMHLN  222 (340)
T ss_dssp             CCCCSSEEEEECGGGCCTTCEEE
T ss_pred             ccccCCCCcccchhhcCCCCEEe
Confidence            55321111111 12467788875

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=90.01  E-value=0.21  Score=35.90  Aligned_cols=90  Identities=8%  Similarity=0.132  Sum_probs=49.2

Q ss_pred             CCeeEEEEcCCCHHHHH--HHHHHHhcCCc---EEEEEEecCC---C--CcchhhhccC-CCCCCcceeCCHHHHHhccc
Q 031216           34 SNIKVIINGAVKEIGRA--AVIAVTKARGM---EVAGAIDSHS---V--GEDIGMVCDM-EQPLEIPVMSDLTMVLGSIS  102 (163)
Q Consensus        34 ~~irV~VvGa~G~mG~~--i~~~i~~~~~~---eLvgvid~~~---~--g~~~~~l~g~-~~~~gi~v~~~l~ell~~~~  102 (163)
                      +.+||+|+|+ |..|..  +...+...+++   ||+ .+|...   .  +.++...... ..+..+..+.|.++++.   
T Consensus         2 k~~KI~iIGa-Gsv~~~~~~~~ll~~~~~l~~~eiv-L~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eal~---   76 (167)
T d1u8xx1           2 KSFSIVIAGG-GSTFTPGIVLMLLDHLEEFPIRKLK-LYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFT---   76 (167)
T ss_dssp             CCEEEEEECT-TSSSHHHHHHHHHHTTTTSCEEEEE-EECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHS---
T ss_pred             CCceEEEECC-ChhhhHHHHHHHHhhhhhcCCCEEE-EEcCChhHHHHHHHHHHHHHHHhCCCcceEecCChhhccC---
Confidence            4589999996 866643  44555556664   554 778431   0  1222221110 01334556789989885   


Q ss_pred             ccCCccEEEEccCchhH---HHHHHHHHHcCC
Q 031216          103 QSKARAVVIDFTDASTV---YDNVKQATAFGM  131 (163)
Q Consensus       103 ~~~~~DVVIDfT~p~~~---~~~~~~al~~G~  131 (163)
                         .+|+||...-+...   ...-+...++|+
T Consensus        77 ---~AD~Vvitag~~~~~g~~rd~~i~~~~Gi  105 (167)
T d1u8xx1          77 ---DVDFVMAHIRVGKYAMRALDEQIPLKYGV  105 (167)
T ss_dssp             ---SCSEEEECCCTTHHHHHHHHHHHHHTTTC
T ss_pred             ---CCCEEEECCCcCCCCceeHHHhhchhcCc
Confidence               99999965433222   222234456665

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.52  E-value=0.17  Score=38.02  Aligned_cols=32  Identities=34%  Similarity=0.595  Sum_probs=26.6

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~   69 (163)
                      .++.|.|+++.+|+.+++.+. ..|.+++. +++
T Consensus         6 K~alITGas~GIG~aia~~la-~~Ga~V~~-~~r   37 (242)
T d1cyda_           6 LRALVTGAGKGIGRDTVKALH-ASGAKVVA-VTR   37 (242)
T ss_dssp             CEEEEESTTSHHHHHHHHHHH-HTTCEEEE-EES
T ss_pred             CEEEEeCCCcHHHHHHHHHHH-HCCCEEEE-EEC
Confidence            468899999999999999987 57899775 454

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.24  E-value=0.16  Score=38.43  Aligned_cols=84  Identities=15%  Similarity=0.108  Sum_probs=49.1

Q ss_pred             eeEE-EEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCcc-EEEEc
Q 031216           36 IKVI-INGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDF  113 (163)
Q Consensus        36 irV~-VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~D-VVIDf  113 (163)
                      +||+ |.|+++++|+++++.+.+..+..++.. +++.  .+..+.              .+++-..   ..++. +..|.
T Consensus         3 ~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~-~r~~--~~~~~~--------------~~~l~~~---~~~~~~~~~Dv   62 (275)
T d1wmaa1           3 IHVALVTGGNKGIGLAIVRDLCRLFSGDVVLT-ARDV--TRGQAA--------------VQQLQAE---GLSPRFHQLDI   62 (275)
T ss_dssp             CCEEEESSCSSHHHHHHHHHHHHHSSSEEEEE-ESSH--HHHHHH--------------HHHHHHT---TCCCEEEECCT
T ss_pred             CeEEEECCCCCHHHHHHHHHHHHhCCCEEEEE-ECCH--HHHHHH--------------HHHHHhc---CCcEEEEEEec
Confidence            6785 679999999999999887778877744 4321  111111              1111110   01222 24577


Q ss_pred             cCchhHHHHHHHHHHc--CCcEEEeCCC
Q 031216          114 TDASTVYDNVKQATAF--GMRSVVYVPH  139 (163)
Q Consensus       114 T~p~~~~~~~~~al~~--G~~vVigttg  139 (163)
                      +.++...+.+....+.  +++++|-.-|
T Consensus        63 s~~~sv~~~~~~~~~~~g~iDiLVnNAG   90 (275)
T d1wmaa1          63 DDLQSIRALRDFLRKEYGGLDVLVNNAG   90 (275)
T ss_dssp             TCHHHHHHHHHHHHHHHSSEEEEEECCC
T ss_pred             CCHHHHHHHHHHHHHhcCCcEEEEEcCC
Confidence            7777777766666543  5777765443

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.19  E-value=0.13  Score=38.61  Aligned_cols=31  Identities=29%  Similarity=0.467  Sum_probs=25.8

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvi   67 (163)
                      .++.|.|+++.+|+.+++.+.+ .|.+++.+.
T Consensus         7 K~alITGas~GIG~aia~~la~-~G~~Vi~~~   37 (245)
T d2ag5a1           7 KVIILTAAAQGIGQAAALAFAR-EGAKVIATD   37 (245)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHH-TTCEEEEEE
T ss_pred             CEEEEeCCCCHHHHHHHHHHHH-cCCEEEEEe
Confidence            3588889999999999999984 589988653

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=88.97  E-value=0.31  Score=37.09  Aligned_cols=32  Identities=38%  Similarity=0.506  Sum_probs=26.6

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~   69 (163)
                      ..+.|.|+++++|+.+++.+. ..|.+++. +++
T Consensus         6 K~alITGas~GIG~aia~~la-~~Ga~V~i-~~r   37 (276)
T d1bdba_           6 EAVLITGGASGLGRALVDRFV-AEGAKVAV-LDK   37 (276)
T ss_dssp             CEEEEETTTSHHHHHHHHHHH-HTTCEEEE-EES
T ss_pred             CEEEEeCCCCHHHHHHHHHHH-HCCCEEEE-EEC
Confidence            468999999999999999988 56898774 554

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=88.87  E-value=0.23  Score=36.02  Aligned_cols=107  Identities=16%  Similarity=0.148  Sum_probs=63.6

Q ss_pred             eeccCCCCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhccccc
Q 031216           25 ISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQS  104 (163)
Q Consensus        25 ~~~~~~~~~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~  104 (163)
                      |.++||-.-.-.++.|+| +|..||-+++.+... +..+. +++.++    +..+-..  -.|..+ .++++++.     
T Consensus        13 i~r~t~~~laGk~vvV~G-YG~vGrG~A~~~rg~-Ga~V~-V~E~DP----i~alqA~--mdGf~v-~~~~~a~~-----   77 (163)
T d1v8ba1          13 LMRATDFLISGKIVVICG-YGDVGKGCASSMKGL-GARVY-ITEIDP----ICAIQAV--MEGFNV-VTLDEIVD-----   77 (163)
T ss_dssp             HHHHHCCCCTTSEEEEEC-CSHHHHHHHHHHHHH-TCEEE-EECSCH----HHHHHHH--TTTCEE-CCHHHHTT-----
T ss_pred             HHHHhCceecCCEEEEec-ccccchhHHHHHHhC-CCEEE-EEecCc----hhhHHHH--hcCCcc-CchhHccc-----
Confidence            446667666667999999 899999999999855 55544 556432    1111111  124444 58889884     


Q ss_pred             CCccEEEEcc-CchhH-HHHHHHHHHcCCcEEEeCCC-CC-HHHHHHHHH
Q 031216          105 KARAVVIDFT-DASTV-YDNVKQATAFGMRSVVYVPH-IQ-LETVSALSA  150 (163)
Q Consensus       105 ~~~DVVIDfT-~p~~~-~~~~~~al~~G~~vVigttg-~~-~e~~~~L~~  150 (163)
                       ..|++|=.| .++.. .++.+ .++.|  .|+...| |+ +-+.+.|.+
T Consensus        78 -~aDi~vTaTGn~~vI~~~h~~-~MKdg--aIl~N~GHfd~EIdv~~L~~  123 (163)
T d1v8ba1          78 -KGDFFITCTGNVDVIKLEHLL-KMKNN--AVVGNIGHFDDEIQVNELFN  123 (163)
T ss_dssp             -TCSEEEECCSSSSSBCHHHHT-TCCTT--CEEEECSSTTTSBCHHHHHT
T ss_pred             -cCcEEEEcCCCCccccHHHHH-HhhCC--eEEEeccccchhhhhHHHHh
Confidence             899998666 33433 45544 23344  3455554 43 333445544

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=88.67  E-value=0.29  Score=34.25  Aligned_cols=33  Identities=24%  Similarity=0.204  Sum_probs=26.0

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (163)
Q Consensus        37 rV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~   69 (163)
                      ||+|+|++|++|+.++-.+...+-..=..++|.
T Consensus         2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di   34 (142)
T d1o6za1           2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDI   34 (142)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECC
T ss_pred             eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEec
Confidence            899999779999999988886665543447883

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=88.61  E-value=0.62  Score=30.99  Aligned_cols=100  Identities=14%  Similarity=0.084  Sum_probs=50.8

Q ss_pred             EEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcce-eCCH--HHHHhcccccCCccEEEEcc
Q 031216           38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDL--TMVLGSISQSKARAVVIDFT  114 (163)
Q Consensus        38 V~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v-~~~l--~ell~~~~~~~~~DVVIDfT  114 (163)
                      |.|+| .|++|+.+++.+...   +++ +++....  ....+.    ..++.+ +.|.  ++.+.+ .+-.+++.+|-.+
T Consensus         3 ivI~G-~g~~g~~l~~~L~~~---~i~-vi~~d~~--~~~~~~----~~~~~~i~Gd~~~~~~L~~-a~i~~A~~vi~~~   70 (129)
T d2fy8a1           3 VVICG-WSESTLECLRELRGS---EVF-VLAEDEN--VRKKVL----RSGANFVHGDPTRVSDLEK-ANVRGARAVIVNL   70 (129)
T ss_dssp             EEEES-CCHHHHHHHHTSCGG---GEE-EEESCTT--HHHHHH----HTTCEEEESCTTSHHHHHH-TTCTTCSEEEECC
T ss_pred             EEEEC-CCHHHHHHHHHHcCC---CCE-EEEcchH--HHHHHH----hcCccccccccCCHHHHHH-hhhhcCcEEEEec
Confidence            78999 699999999987533   344 4564321  112221    224433 3332  233321 1124778888444


Q ss_pred             CchhH-HHHHHHHHHc--CCcEEEeCCCCCHHHHHHHHHH
Q 031216          115 DASTV-YDNVKQATAF--GMRSVVYVPHIQLETVSALSAF  151 (163)
Q Consensus       115 ~p~~~-~~~~~~al~~--G~~vVigttg~~~e~~~~L~~~  151 (163)
                      ..+.. ...+..+.+.  ..+++.-.  .+++..+.|..+
T Consensus        71 ~~d~~n~~~~~~~r~~~~~~~iia~~--~~~~~~~~l~~~  108 (129)
T d2fy8a1          71 ESDSETIHCILGIRKIDESVRIIAEA--ERYENIEQLRMA  108 (129)
T ss_dssp             SSHHHHHHHHHHHHHHCSSSCEEEEC--SSGGGHHHHHHH
T ss_pred             cchhhhHHHHHHHHHHCCCceEEEEE--cCHHHHHHHHHC
Confidence            33322 2233333333  44666533  456666667655

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=88.49  E-value=0.045  Score=39.74  Aligned_cols=93  Identities=15%  Similarity=0.150  Sum_probs=52.3

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCH--HHHHhcccccCCccEEEEcc
Q 031216           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDL--TMVLGSISQSKARAVVIDFT  114 (163)
Q Consensus        37 rV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l--~ell~~~~~~~~~DVVIDfT  114 (163)
                      .|.|.|++|..|...++.+. .-|.++++...++.. .+...-+|.   ..+.-|++.  .+.+.    ....|.++|+.
T Consensus        34 ~vlV~gasGGVG~~aiQlAk-~~Ga~Via~~~~~~k-~~~~~~lGa---d~vi~~~~~~~~~~l~----~~~~~~vvD~V  104 (177)
T d1o89a2          34 EIVVTGASGGVGSTAVALLH-KLGYQVVAVSGREST-HEYLKSLGA---SRVLPRDEFAESRPLE----KQVWAGAIDTV  104 (177)
T ss_dssp             EEEESSTTSHHHHHHHHHHH-HTTCCEEEEESCGGG-HHHHHHHTE---EEEEEGGGSSSCCSSC----CCCEEEEEESS
T ss_pred             cEEEEEccccchHHHHHHHH-HcCCCeEEEecchhH-HHHHHhhcc---ccccccccHHHHHHHH----hhcCCeeEEEc
Confidence            69999999999999988775 679999987765321 111121221   111112221  12222    24679999987


Q ss_pred             CchhHHHHHHHHHHcCCcEEEeCC
Q 031216          115 DASTVYDNVKQATAFGMRSVVYVP  138 (163)
Q Consensus       115 ~p~~~~~~~~~al~~G~~vVigtt  138 (163)
                      --+...+.+......|.=+.+|..
T Consensus       105 gg~~~~~~l~~l~~~Griv~~G~~  128 (177)
T d1o89a2         105 GDKVLAKVLAQMNYGGCVAACGLA  128 (177)
T ss_dssp             CHHHHHHHHHTEEEEEEEEECCCT
T ss_pred             chHHHHHHHHHhccccceEeeccc
Confidence            544444444444444554455443

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=87.66  E-value=0.31  Score=33.89  Aligned_cols=69  Identities=19%  Similarity=0.314  Sum_probs=40.8

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCc-EEEEEEecCC---CC--cchhhhcc-CCCCCCcceeCCHHHHHhcccccCCcc
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSHS---VG--EDIGMVCD-MEQPLEIPVMSDLTMVLGSISQSKARA  108 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~-eLvgvid~~~---~g--~~~~~l~g-~~~~~gi~v~~~l~ell~~~~~~~~~D  108 (163)
                      |||+|+|+ |++|..++-.+...+-+ ||+ ++|...   .|  .|+.+-.. .+....+...+|++++       ...|
T Consensus         1 MKI~IIGa-G~VG~~~a~~l~~~~~~~elv-L~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d~~~~-------~~ad   71 (142)
T d1ojua1           1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIA-LVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADYSLL-------KGSE   71 (142)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHSCCSEEE-EECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESCGGGG-------TTCS
T ss_pred             CEEEEECc-CHHHHHHHHHHHhcCcCceEE-EEecccchhhHHHHHHhhhccccCCCCccccCCCHHHh-------cccc
Confidence            69999995 99999999888766654 455 688431   12  22222111 1111233344677544       4899


Q ss_pred             EEEEc
Q 031216          109 VVIDF  113 (163)
Q Consensus       109 VVIDf  113 (163)
                      +||-.
T Consensus        72 iVvit   76 (142)
T d1ojua1          72 IIVVT   76 (142)
T ss_dssp             EEEEC
T ss_pred             EEEEe
Confidence            88843

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=87.53  E-value=0.35  Score=35.45  Aligned_cols=31  Identities=32%  Similarity=0.557  Sum_probs=25.3

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (163)
Q Consensus        37 rV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~   69 (163)
                      -|.|.|+++.+|+.+++.+. ..|.+++. +|+
T Consensus         3 VvlITGas~GIG~aiA~~la-~~Ga~V~~-~~~   33 (257)
T d1fjha_           3 IIVISGCATGIGAATRKVLE-AAGHQIVG-IDI   33 (257)
T ss_dssp             EEEEETTTSHHHHHHHHHHH-HTTCEEEE-EES
T ss_pred             EEEEeCCCCHHHHHHHHHHH-HCCCEEEE-EEC
Confidence            35888999999999999997 56999775 453

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.12  E-value=0.52  Score=33.51  Aligned_cols=35  Identities=17%  Similarity=0.303  Sum_probs=26.6

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~   70 (163)
                      +-||+|+|+ |++|..++-.+...+-..=..++|..
T Consensus        19 ~~KI~IIGa-G~VG~~~A~~l~~~~l~~elvL~D~~   53 (159)
T d2ldxa1          19 RCKITVVGV-GDVGMACAISILLKGLADELALVDAD   53 (159)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHTTTSCSEEEEECSC
T ss_pred             CCeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence            358999995 99999999888866655434478843

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=86.56  E-value=0.5  Score=33.29  Aligned_cols=72  Identities=8%  Similarity=0.015  Sum_probs=38.0

Q ss_pred             eeEEEEcCCCHHHHHHH--HHHHhcCC---cEEEEEEecCCC-Ccchhhhcc--CCCCCCcceeCCHHHHHhcccccCCc
Q 031216           36 IKVIINGAVKEIGRAAV--IAVTKARG---MEVAGAIDSHSV-GEDIGMVCD--MEQPLEIPVMSDLTMVLGSISQSKAR  107 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~--~~i~~~~~---~eLvgvid~~~~-g~~~~~l~g--~~~~~gi~v~~~l~ell~~~~~~~~~  107 (163)
                      |||+|+|| |..|...+  ..+....+   -||+ .+|.... .+...++..  ......+.++++.++.+.      ..
T Consensus         1 mKIaiIGa-Gs~g~~~~~~~l~~~~~~~~~~el~-L~Did~~k~~~~~d~~~~~~~~~~~~~~t~~~~~~l~------~a   72 (162)
T d1up7a1           1 MRIAVIGG-GSSYTPELVKGLLDISEDVRIDEVI-FYDIDEEKQKIVVDFVKRLVKDRFKVLISDTFEGAVV------DA   72 (162)
T ss_dssp             CEEEEETT-TCTTHHHHHHHHHHHTTTSCCCEEE-EECSCHHHHHHHHHHHHHHHTTSSEEEECSSHHHHHT------TC
T ss_pred             CEEEEECC-CHHHHHHHHHHHHhcccccCccEEE-EEecCcHHHHHHHHHHHhhhccCceEEEecCcccccC------CC
Confidence            69999996 86664332  22333332   3444 7885321 011111100  001344556788888884      89


Q ss_pred             cEEEEccC
Q 031216          108 AVVIDFTD  115 (163)
Q Consensus       108 DVVIDfT~  115 (163)
                      |+||...-
T Consensus        73 DvVVita~   80 (162)
T d1up7a1          73 KYVIFQFR   80 (162)
T ss_dssp             SEEEECCC
T ss_pred             CEEEEecc
Confidence            99885443

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=86.11  E-value=0.76  Score=33.98  Aligned_cols=32  Identities=25%  Similarity=0.317  Sum_probs=25.8

Q ss_pred             eeEEEEcCCC--HHHHHHHHHHHhcCCcEEEEEEec
Q 031216           36 IKVIINGAVK--EIGRAAVIAVTKARGMEVAGAIDS   69 (163)
Q Consensus        36 irV~VvGa~G--~mG~~i~~~i~~~~~~eLvgvid~   69 (163)
                      .++.|.||+|  ++|+.+++.+. ..|.+|+ +.++
T Consensus         9 K~alITGas~~~GIG~aiA~~la-~~Ga~V~-i~~~   42 (256)
T d1ulua_           9 KKALVMGVTNQRSLGFAIAAKLK-EAGAEVA-LSYQ   42 (256)
T ss_dssp             CEEEEESCCCSSSHHHHHHHHHH-HTTCEEE-EEES
T ss_pred             CEEEEECCCCCchHHHHHHHHHH-HCCCEEE-EEeC
Confidence            4689999987  79999999997 5689975 4554

>d1b74a1 c.78.2.1 (A:1-105) Glutamate racemase {Aquifex pyrophilus [TaxId: 2714]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/glutamate racemase
family: Aspartate/glutamate racemase
domain: Glutamate racemase
species: Aquifex pyrophilus [TaxId: 2714]

Probab=85.96  E-value=1.7  Score=28.92  Aligned_cols=86  Identities=13%  Similarity=0.130  Sum_probs=51.1

Q ss_pred             eeEEEEcCCCHHHHHHHHHHH-hcCCcEEEEEEecC--CCCcch-hhhccCCCCCCcceeCCHHHHHhcccccCCccEEE
Q 031216           36 IKVIINGAVKEIGRAAVIAVT-KARGMEVAGAIDSH--SVGEDI-GMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI  111 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~-~~~~~eLvgvid~~--~~g~~~-~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVI  111 (163)
                      |||||.= ||-=|-.+++.+. ..|+.+++-+.|..  +.|.+- .++..        .....-+.+.    +.++|.+|
T Consensus         1 mkIgifD-SGiGGLtVl~~l~~~lP~~~~iY~~D~a~~PYG~ks~~~I~~--------~~~~~~~~l~----~~~~~~iV   67 (105)
T d1b74a1           1 MKIGIFD-SGVGGLTVLKAIRNRYRKVDIVYLGDTARVPYGIRSKDTIIR--------YSLECAGFLK----DKGVDIIV   67 (105)
T ss_dssp             CEEEEEE-SSSTHHHHHHHHHHHSSSCEEEEEECGGGCCGGGSCHHHHHH--------HHHHHHHHHH----TTTCSEEE
T ss_pred             CEEEEEe-CCCCHHHHHHHHHHHCCCCCEEEEecCCCCCCCCCCHHHHHH--------HHHHHHHHHH----HcCCCEEE
Confidence            6899997 7888888887774 48999999999953  233221 11110        0111222333    36999988


Q ss_pred             EccCchhH--HHHHHHHHHcCCcEEEeC
Q 031216          112 DFTDASTV--YDNVKQATAFGMRSVVYV  137 (163)
Q Consensus       112 DfT~p~~~--~~~~~~al~~G~~vVigt  137 (163)
                      -+++..++  .+.++  .+..+|+ +|.
T Consensus        68 iACNTaS~~al~~lr--~~~~~Pi-iGv   92 (105)
T d1b74a1          68 VACNTASAYALERLK--KEINVPV-FGV   92 (105)
T ss_dssp             ECCHHHHHHHHHHHH--HHSSSCE-EES
T ss_pred             EecCcHHHHHHHHHH--HHCCCCE-EEe
Confidence            88755443  33333  3456775 443

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=85.75  E-value=1.3  Score=31.24  Aligned_cols=72  Identities=18%  Similarity=0.128  Sum_probs=41.4

Q ss_pred             CeeEEEEcCCC--HHHHHHHHHHHhcCCc---EEEEEEecCCC---Ccchhh-----hccCCCCCCcceeCCHHHHHhcc
Q 031216           35 NIKVIINGAVK--EIGRAAVIAVTKARGM---EVAGAIDSHSV---GEDIGM-----VCDMEQPLEIPVMSDLTMVLGSI  101 (163)
Q Consensus        35 ~irV~VvGa~G--~mG~~i~~~i~~~~~~---eLvgvid~~~~---g~~~~~-----l~g~~~~~gi~v~~~l~ell~~~  101 (163)
                      ++||.|+|| |  +.+..++..+...+.+   +| ..+|....   ++-...     +.....+..+..++|..+.+.  
T Consensus         1 k~KI~iIGa-Gs~~~~~~~~~l~~~~~~~~~~eI-~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~td~~~al~--   76 (169)
T d1s6ya1           1 RLKIATIGG-GSSYTPELVEGLIKRYHELPVGEL-WLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALD--   76 (169)
T ss_dssp             CEEEEEETT-TCTTHHHHHHHHHHTTTTCCEEEE-EEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHT--
T ss_pred             CcEEEEECC-ChhhHHHHHHHHHHhccccCCCEE-EEEcCCccHHHHHHHHHHHHHHHHhcCCCceeeecCCchhhcC--
Confidence            489999996 7  4556677777766653   44 47774321   111110     111111233445688888874  


Q ss_pred             cccCCccEEEEcc
Q 031216          102 SQSKARAVVIDFT  114 (163)
Q Consensus       102 ~~~~~~DVVIDfT  114 (163)
                          ..|+||...
T Consensus        77 ----gaDvVv~ta   85 (169)
T d1s6ya1          77 ----GADFVTTQF   85 (169)
T ss_dssp             ----TCSEEEECC
T ss_pred             ----CCCEEEEcc
Confidence                899999554

>d1u1ia1 c.2.1.3 (A:1-227,A:333-392) Myo-inositol 1-phosphate synthase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Myo-inositol 1-phosphate synthase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=84.24  E-value=0.38  Score=37.63  Aligned_cols=42  Identities=17%  Similarity=0.258  Sum_probs=35.6

Q ss_pred             HHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeEEcCC
Q 031216          120 YDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVSTGS  162 (163)
Q Consensus       120 ~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv~tg~  162 (163)
                      .-|+.+|++.|++.|-++|.+... .+.|.++|++.++.+.|.
T Consensus       183 ~lYA~AAl~aG~~fVN~tPs~~a~-~Pal~ela~~~gvPiaGd  224 (287)
T d1u1ia1         183 MLYAYAALKLGLPYANFTPSPGSA-IPALKELAEKKGVPHAGN  224 (287)
T ss_dssp             HHHHHHHHHTTCCEEECSSSCTTC-SHHHHHHHHTTTCEEEES
T ss_pred             HHHHHHHHHcCCCEEeccCccccC-CHHHHHHHHHcCCCEecc
Confidence            448889999999999999976543 477999999999998874

>d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD
species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]

Probab=83.78  E-value=2.2  Score=32.18  Aligned_cols=70  Identities=14%  Similarity=0.056  Sum_probs=46.1

Q ss_pred             CCCcceeCCHHHHHhcccccCCccEEEEccC-chhHHHHHHHHHHcCC--cEEEeCCCCCHHHHHHHHHHhhhcCeEEc
Q 031216           85 PLEIPVMSDLTMVLGSISQSKARAVVIDFTD-ASTVYDNVKQATAFGM--RSVVYVPHIQLETVSALSAFCDKASMVST  160 (163)
Q Consensus        85 ~~gi~v~~~l~ell~~~~~~~~~DVVIDfT~-p~~~~~~~~~al~~G~--~vVigttg~~~e~~~~L~~~A~~~~Vv~t  160 (163)
                      +.|+.+++|..|+..      ++|+||.+.+ ++...+.++..+++-.  .+|+-++..+.....++.+..++.++-+.
T Consensus       126 e~Gv~v~~d~~Eav~------~ADiII~~vP~~~~v~~Vi~~I~~~l~~g~Iiid~STi~~~~~~~l~e~l~~kgi~vi  198 (242)
T d2b0ja2         126 DVGLKVTSDDREAVE------GADIVITWLPKGNKQPDIIKKFADAIPEGAIVTHACTIPTTKFAKIFKDLGREDLNIT  198 (242)
T ss_dssp             GGTCEEESCHHHHHT------TCSEEEECCTTCTTHHHHHHHHGGGSCTTCEEEECSSSCHHHHHHHHHHTTCTTSEEE
T ss_pred             HCCCEEECCHHHHHh------cCCeEEEeeecHHHHHHHHHHHHhhCCCCcEEEecCCCcHHHHHHHHHhcccCCCEEE
Confidence            356778899999885      9999996552 3334455554443322  25565666677788888888887776443

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=83.33  E-value=0.74  Score=33.95  Aligned_cols=31  Identities=13%  Similarity=0.329  Sum_probs=24.0

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCc-EEEEEEec
Q 031216           37 KVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDS   69 (163)
Q Consensus        37 rV~VvGa~G~mG~~i~~~i~~~~~~-eLvgvid~   69 (163)
                      -+.|.|++|.+|+.+++.+.++ +. .|+ ++.+
T Consensus        11 t~lVTGgs~GIG~a~a~~la~~-Ga~~vv-l~~R   42 (259)
T d2fr1a1          11 TVLVTGGTGGVGGQIARWLARR-GAPHLL-LVSR   42 (259)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHH-TCSEEE-EEES
T ss_pred             EEEEECCCcHHHHHHHHHHHHC-CCCEEE-EEeC
Confidence            5899999999999999999854 55 344 4443

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.33  E-value=0.7  Score=34.35  Aligned_cols=33  Identities=36%  Similarity=0.562  Sum_probs=27.2

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~   70 (163)
                      .++.|.|+++++|+.+++.+. ..|.+++. +|++
T Consensus         8 K~~lITGas~GIG~aia~~la-~~G~~V~~-~~r~   40 (244)
T d1pr9a_           8 RRVLVTGAGKGIGRGTVQALH-ATGARVVA-VSRT   40 (244)
T ss_dssp             CEEEEESTTSHHHHHHHHHHH-HTTCEEEE-EESC
T ss_pred             CEEEEeCCCCHHHHHHHHHHH-HcCCEEEE-EECC
Confidence            478999999999999999997 57888774 5643

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.32  E-value=0.79  Score=34.01  Aligned_cols=32  Identities=22%  Similarity=0.274  Sum_probs=25.1

Q ss_pred             eEEEE-cCCCHHHHHHHHHHHh--cCCcEEEEEEec
Q 031216           37 KVIIN-GAVKEIGRAAVIAVTK--ARGMEVAGAIDS   69 (163)
Q Consensus        37 rV~Vv-Ga~G~mG~~i~~~i~~--~~~~eLvgvid~   69 (163)
                      ||+|+ |+++++|+.+++.+.+  ..|..++. +++
T Consensus         7 KvalITGas~GIG~aiA~~lA~~~~~G~~Vv~-~~r   41 (259)
T d1oaaa_           7 AVCVLTGASRGFGRALAPQLARLLSPGSVMLV-SAR   41 (259)
T ss_dssp             EEEEESSCSSHHHHHHHHHHHTTBCTTCEEEE-EES
T ss_pred             CEEEEeCCCCHHHHHHHHHHHhcccCCCEEEE-EEC
Confidence            55555 9999999999999875  47888885 444

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.02  E-value=0.74  Score=32.78  Aligned_cols=35  Identities=34%  Similarity=0.461  Sum_probs=28.2

Q ss_pred             CCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031216           31 PPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (163)
Q Consensus        31 ~~~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid   68 (163)
                      |+.+.-||+|+|+ |--|-..+..|. ..|++++ ++.
T Consensus         1 p~~~~~kViVIGa-G~aGL~aA~~L~-~~G~~V~-VlE   35 (449)
T d2dw4a2           1 PTKKTGKVIIIGS-GVSGLAAARQLQ-SFGMDVT-LLE   35 (449)
T ss_dssp             CSSCCCEEEEECC-BHHHHHHHHHHH-HTTCEEE-EEC
T ss_pred             CCCCCCcEEEECC-CHHHHHHHHHHH-hCCCCEE-EEe
Confidence            5667789999995 999988888887 4688865 676

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=82.84  E-value=0.58  Score=33.76  Aligned_cols=31  Identities=35%  Similarity=0.632  Sum_probs=25.5

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (163)
Q Consensus        37 rV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~   69 (163)
                      .+.|.|+++++|+.+++.+. ..|.+++. +|+
T Consensus         3 ~alITGas~GIG~aiA~~la-~~Ga~V~i-~~~   33 (241)
T d1uaya_           3 SALVTGGASGLGRAAALALK-ARGYRVVV-LDL   33 (241)
T ss_dssp             EEEEETTTSHHHHHHHHHHH-HHTCEEEE-EES
T ss_pred             EEEEeCCCCHHHHHHHHHHH-HCCCEEEE-EEC
Confidence            57888999999999999998 46888774 554

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=82.76  E-value=0.57  Score=35.35  Aligned_cols=32  Identities=13%  Similarity=0.209  Sum_probs=26.7

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~   69 (163)
                      ..+.|.|++|++|+.+++.+. ..|.+++. +++
T Consensus        26 K~alITGas~GIG~aiA~~la-~~Ga~Vii-~~r   57 (294)
T d1w6ua_          26 KVAFITGGGTGLGKGMTTLLS-SLGAQCVI-ASR   57 (294)
T ss_dssp             CEEEEETTTSHHHHHHHHHHH-HTTCEEEE-EES
T ss_pred             CEEEEeCCCCHHHHHHHHHHH-HcCCEEEE-EEC
Confidence            458899999999999999988 57899885 454

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=82.50  E-value=0.83  Score=32.11  Aligned_cols=31  Identities=26%  Similarity=0.310  Sum_probs=25.0

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHh-cCCcEEEEEEe
Q 031216           36 IKVIINGAVKEIGRAAVIAVTK-ARGMEVAGAID   68 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~-~~~~eLvgvid   68 (163)
                      |||.|+|+ |..|-+.+..+.+ .++.+++ +++
T Consensus         1 ~KVvIIGg-G~~G~e~A~~l~~~~~~~~V~-v~~   32 (198)
T d1nhpa1           1 MKVIVLGS-SHGGYEAVEELLNLHPDAEIQ-WYE   32 (198)
T ss_dssp             CEEEEECS-SHHHHHHHHHHHHHCTTSEEE-EEE
T ss_pred             CEEEEECC-cHHHHHHHHHHHhcCCCCeEE-EEe
Confidence            69999995 9999999988876 4677877 444

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=82.30  E-value=1.9  Score=29.42  Aligned_cols=93  Identities=18%  Similarity=0.109  Sum_probs=52.6

Q ss_pred             CeeEEEEcCCC-----------HHHHHHHHHHHhcCCcEEEEEEecCC-CCcchhhhccCCCCCCcce-eCCHHHHHhcc
Q 031216           35 NIKVIINGAVK-----------EIGRAAVIAVTKARGMEVAGAIDSHS-VGEDIGMVCDMEQPLEIPV-MSDLTMVLGSI  101 (163)
Q Consensus        35 ~irV~VvGa~G-----------~mG~~i~~~i~~~~~~eLvgvid~~~-~g~~~~~l~g~~~~~gi~v-~~~l~ell~~~  101 (163)
                      .-||.|+| +|           +.+...++.+. ..+.+.+-+=.++. +-.| .++...  -+--|+ +.++.++++. 
T Consensus         4 ~kkvlViG-sGp~rIGq~~EfDy~~~~a~~aLk-~~g~~~IliN~NPeTVstd-~d~aD~--lYfeplt~e~v~~Ii~~-   77 (121)
T d1a9xa4           4 REKIMVLG-GGPNRIGQGIEFDYCCVHASLALR-EDGYETIMVNCNPETVSTD-YDTSDR--LYFEPVTLEDVLEIVRI-   77 (121)
T ss_dssp             SCEEEEEC-CCSCBTTBCHHHHHHHHHHHHHHH-HTTCEEEEECCCTTSSTTS-TTSSSE--EECCCCSHHHHHHHHHH-
T ss_pred             CCEEEEEC-CCcCcccccchhhHHHHHHHHHHH-hcCCeEEEEecChhhhhcC-hhhcCc--eEEccCCHHHHHHHHHH-
Confidence            45899999 56           67888888886 57899884333321 1111 111100  000122 2455565654 


Q ss_pred             cccCCccEEEEccC-chhHHHHHHHHHHcCCcEEEeCC
Q 031216          102 SQSKARAVVIDFTD-ASTVYDNVKQATAFGMRSVVYVP  138 (163)
Q Consensus       102 ~~~~~~DVVIDfT~-p~~~~~~~~~al~~G~~vVigtt  138 (163)
                         ++||.|+ .+. -......+....+.|+++ +||+
T Consensus        78 ---E~p~~ii-~~~GGQtalnla~~L~~~gv~i-LGt~  110 (121)
T d1a9xa4          78 ---EKPKGVI-VQYGGQTPLKLARALEAAGVPV-IGTS  110 (121)
T ss_dssp             ---HCCSEEE-CSSSTHHHHTTHHHHHHTTCCB-CSSC
T ss_pred             ---hCCCEEE-eehhhhhHHHHHHHHHHcCCcE-ECCC
Confidence               7899877 432 223345566677899984 7775

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=81.69  E-value=0.7  Score=28.96  Aligned_cols=35  Identities=20%  Similarity=0.366  Sum_probs=28.8

Q ss_pred             CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 031216           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (163)
Q Consensus        35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~   70 (163)
                      .-+|.|.|++|.+|...++.+. .-++++++...++
T Consensus        32 ~~~vlI~gasGgVG~~aiQlak-~~G~~Vi~~t~s~   66 (77)
T d1o8ca2          32 DGEIVVTGASGGVGSTAVALLH-KLGYQVVAVSGRE   66 (77)
T ss_dssp             GCEEEESSTTSHHHHHHHHHHH-HTTCCEEEEESCG
T ss_pred             CCcEEEEeCCCcHHHHHHHHHH-HcCCeEEEEECCH
Confidence            3579999999999999988765 6799999877653

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=81.36  E-value=0.94  Score=33.48  Aligned_cols=33  Identities=27%  Similarity=0.428  Sum_probs=25.4

Q ss_pred             eeEEE-EcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216           36 IKVII-NGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (163)
Q Consensus        36 irV~V-vGa~G~mG~~i~~~i~~~~~~eLvgvid~   69 (163)
                      +.|+| .|+++++|+.+++.+. ..|.+++....+
T Consensus         2 ~pVAlITGas~GIG~aiA~~la-~~Ga~V~i~~~~   35 (284)
T d1e7wa_           2 VPVALVTGAAKRLGRSIAEGLH-AEGYAVCLHYHR   35 (284)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHH-HTTCEEEEEESS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHH-HcCCEEEEEeCC
Confidence            34654 5999999999999987 578998755443

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.29  E-value=0.72  Score=34.57  Aligned_cols=31  Identities=39%  Similarity=0.494  Sum_probs=26.4

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvi   67 (163)
                      .++.|+||++++|+.+++.+.+ .|.+|+.+.
T Consensus        15 K~alITGassGIG~aiA~~la~-~G~~Vil~~   45 (269)
T d1xu9a_          15 KKVIVTGASKGIGREMAYHLAK-MGAHVVVTA   45 (269)
T ss_dssp             CEEEESSCSSHHHHHHHHHHHH-TTCEEEEEE
T ss_pred             CEEEEeCCCcHHHHHHHHHHHH-CCCEEEEEE
Confidence            4699999999999999999985 689887554

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=81.00  E-value=0.82  Score=34.19  Aligned_cols=34  Identities=21%  Similarity=0.200  Sum_probs=28.7

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~   70 (163)
                      ..|.|.|+++++|+++++.+. ..|.+++.+.++.
T Consensus         6 K~vlITGgs~GIG~~~A~~la-~~G~~vii~~r~~   39 (254)
T d1sbya1           6 KNVIFVAALGGIGLDTSRELV-KRNLKNFVILDRV   39 (254)
T ss_dssp             CEEEEETTTSHHHHHHHHHHH-HTCCSEEEEEESS
T ss_pred             CEEEEecCCCHHHHHHHHHHH-HCCCEEEEEECCc
Confidence            469999999999999999997 5688888777754

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.99  E-value=1.1  Score=32.73  Aligned_cols=32  Identities=19%  Similarity=0.349  Sum_probs=26.3

Q ss_pred             eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (163)
Q Consensus        36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~   69 (163)
                      ..+.|.|+++++|+.+++.+. ..|..++. +++
T Consensus         6 KvalITGas~GIG~aia~~la-~~G~~V~~-~~r   37 (248)
T d2o23a1           6 LVAVITGGASGLGLATAERLV-GQGASAVL-LDL   37 (248)
T ss_dssp             CEEEEETTTSHHHHHHHHHHH-HTTCEEEE-EEC
T ss_pred             CEEEEeCCCCHHHHHHHHHHH-HCCCEEEE-EeC
Confidence            447899999999999999997 57899775 454

>d1fmta2 c.65.1.1 (A:1-206) Methionyl-tRNAfmet formyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: Methionyl-tRNAfmet formyltransferase
species: Escherichia coli [TaxId: 562]

Probab=80.35  E-value=1.3  Score=31.85  Aligned_cols=35  Identities=17%  Similarity=0.394  Sum_probs=29.7

Q ss_pred             CCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (163)
Q Consensus        33 ~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~   69 (163)
                      +++|||+++| ++..+..+++.+.+ .+.++++++..
T Consensus         1 ~~~mKI~f~G-~~~~~~~~L~~L~~-~~~~i~~Vit~   35 (206)
T d1fmta2           1 SESLRIIFAG-TPDFAARHLDALLS-SGHNVVGVFTQ   35 (206)
T ss_dssp             CCCCEEEEEE-CSHHHHHHHHHHHH-TTCEEEEEECC
T ss_pred             CCCcEEEEEC-CCHHHHHHHHHHHh-CCCCEEEEEeC
Confidence            4679999999 79999999998875 58899999863