Citrus Sinensis ID: 031222

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160---
Protein Sequence
MEKIAVMSVRSIRRAACVRSSIIAAANNHHLRHLSSSRSLFSLSSPAASIPSKSIPFDCRSSLVMSIGCNRSFSEDVAHMPVIRDPEIQRAFKDLMAADWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEEFIGIIMNIKMEFDDEIGLSGEVL
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHcccccccccccccccHHcccccHHHcccccccccccccccccccHHHHHHHHHHHHccHHHccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
MEKIAVMSVRSIRRAACVRSSIIAAANNHhlrhlsssrslfslsspaasipsksipfdcrSSLVmsigcnrsfsedvahmpvirdpEIQRAFKDLMAadwgelpasvIHDAKsalsrnnddkAGQEVLKNVFSAAEAVEEFIGIIMNIKMefddeiglsgevl
Flexible Loop (DISEMBL)
MEKIAVMSVRSIRRAACVRSSIIAAANNHHLRHLSSSRSLFSLSSPAASIPSKSIPFDCRSSLVMSIGCNRSFSEDVAHMPVIRDPEIQRAFKDLMAADWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEEFIGIIMNIKMEFDDEIGLSGEVL
Low Complexity Region (SEG)
MEKIAVMSVRSIRRAACVRSSIIAAANNHhlrhlsssrslfslsspaasipsksipfDCRSSLVMSIGCNRSFSEDVAHMPVIRDPEIQRAFKDLMAADWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEEFIGIIMNIKMEFDDEIGLSGEVL
Disordered region (IsUnstruct)
******MSVRSIRRAACVRSSIIAAANNHHL***********************IPFDCRSSLVMSIGCNRSFSEDVAHMPVIRDPEIQRAFKDLMAADWGELPASVIH*****************VLKNVFSAAEAVEEFIGIIMNIKMEFDDEI*******
Disordered Region (DISOPRED)
*********RSIRRAACVRSSIIAAANNHHLRHLSSSRS*******************CRSSLVMSIGCNRSFSEDVAHMPVIRDPEIQRAFKDLMAADWGELPASVIHD***************EVLKNVFSAAEAVEEFIGIIMNIKMEFDDEIGLSGEV*
Disordered Region (DISEMBL)
********VRSIRRAACVRSSIIAAANNHHLRHLSSSRSLFSLSSPAASIPSKSIPFDCRSSLVMSIGCNRSFSEDVAHMPVIRDPEIQRAFKDLMAADWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEEFIGIIMNIKMEFDDE********
Disordered Region (DISPRO)
****AVMSVRSIRRAACVRSSIIAAANNHHLRHLSSSRSLFSLSSPAASIPSKSIPFDCRSSLVMSIGCNRSFSEDVAHMPVIRDPEIQRAFKDLMAADWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEEFIGIIMNIKMEFDDEIGLS****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEKIAVMSVRSIRRAACVRSSIIAAANNHHLRHLSSSRSLFSLSSPAASIPSKSIPFDCRSSLVMSIGCNRSFSEDVAHMPVIRDPEIQRAFKDLMAADWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEEFIGIIMNIKMEFDDEIGLSGEVL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	163	2.2.26 [Sep-21-2011]
Q9SX77	257	Uncharacterized protein A	yes	no	0.822	0.521	0.527	3e-36

>sp|Q9SX77|UMP6_ARATH Uncharacterized protein At1g47420, mitochondrial OS=Arabidopsis thaliana GN=At1g47420 PE=1 SV=1

 Score =  150 bits (379), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 78/148 (52%), Positives = 101/148 (68%), Gaps = 14/148 (9%)

Query: 27  NNHHL-RHLSSSRSLFSLSSPAAS------------IPSKSIPFDCRSSLVMSIGCNRSF 73
            +HH+ +HLS  R+L +++ P AS            I   S+  D +    M +G  R F
Sbjct: 31  GSHHIEKHLSRHRTLITVA-PNASVIGDVQINKGSFISYASVSRDLQYPRAMGMGQVRRF 89

Query: 74  SEDVAHMPVIRDPEIQRAFKDLMAADWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFS 133
           SEDV+HMP + D ++  AFKDLMAADW ELP++V+ DAK+A+S+N DDKAGQE LKNVF 
Sbjct: 90  SEDVSHMPEMEDSDVLNAFKDLMAADWAELPSAVVKDAKTAISKNTDDKAGQEALKNVFR 149

Query: 134 AAEAVEEFIGIIMNIKMEFDDEIGLSGE 161
           AAEAVEEF GI+ +IKME DD IG+SGE
Sbjct: 150 AAEAVEEFGGILTSIKMEIDDSIGMSGE 177

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	163
224136704	239	predicted protein [Populus trichocarpa]	0.975	0.665	0.608	2e-47
118489030	239	unknown [Populus trichocarpa x Populus d	0.975	0.665	0.602	1e-46
225458573	242	PREDICTED: uncharacterized protein At1g4	0.975	0.657	0.564	1e-44
255538368	238	conserved hypothetical protein [Ricinus	0.950	0.651	0.585	9e-42
297852338	260	hypothetical protein ARALYDRAFT_473889 [	0.828	0.519	0.526	6e-35
18401719	257	succinate dehydrogenase 5 [Arabidopsis t	0.822	0.521	0.527	2e-34
351726377	225	uncharacterized protein LOC100527337 [Gl	0.638	0.462	0.625	4e-32
449470049	241	PREDICTED: uncharacterized protein At1g4	0.963	0.651	0.478	2e-31
351722341	228	uncharacterized protein LOC100527668 [Gl	0.926	0.662	0.487	3e-31
388502854	238	unknown [Medicago truncatula]	0.638	0.436	0.557	6e-27

>gi|224136704|ref|XP_002326924.1| predicted protein [Populus trichocarpa] gi|118481849|gb|ABK92861.1| unknown [Populus trichocarpa] gi|222835239|gb|EEE73674.1| predicted protein [Populus trichocarpa]

 Score =  193 bits (490), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 98/161 (60%), Positives = 118/161 (73%), Gaps = 2/161 (1%)

Query: 1   MEKIAVMSVRSIRRAACVRSSIIAAANNHHLRHLSSSRSLFSLSSPAASIPSKSIPFDCR 60
           MEK+  +  R+I RAAC+ SS  AA +   LRH  +SRSLF++S+P+ S   K IP D R
Sbjct: 1   MEKMGAL--RTIYRAACLGSSRSAAISQSQLRHHLASRSLFTVSAPSVSTTPKRIPCDFR 58

Query: 61  SSLVMSIGCNRSFSEDVAHMPVIRDPEIQRAFKDLMAADWGELPASVIHDAKSALSRNND 120
           S   MS+G +RSFSEDV H P I+DPEI   FKDLMA +W ELP +V+ DAK ALS+N D
Sbjct: 59  SPFAMSLGSSRSFSEDVTHFPDIKDPEILNVFKDLMATNWDELPNAVVSDAKKALSKNTD 118

Query: 121 DKAGQEVLKNVFSAAEAVEEFIGIIMNIKMEFDDEIGLSGE 161
           DK GQE+LKNVF AAEAVEEF G IM++KME DD IGLSGE
Sbjct: 119 DKVGQEILKNVFRAAEAVEEFGGKIMSLKMELDDIIGLSGE 159

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118489030|gb|ABK96322.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  191 bits (484), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 97/161 (60%), Positives = 118/161 (73%), Gaps = 2/161 (1%)

Query: 1   MEKIAVMSVRSIRRAACVRSSIIAAANNHHLRHLSSSRSLFSLSSPAASIPSKSIPFDCR 60
           MEK+  +  R+I RAAC+ SS  AA +   LRH  +SRSLF++S+P+ S   K IP D R
Sbjct: 1   MEKMGAL--RTIYRAACLGSSRSAAISQSQLRHHLASRSLFTVSAPSVSTTPKRIPCDFR 58

Query: 61  SSLVMSIGCNRSFSEDVAHMPVIRDPEIQRAFKDLMAADWGELPASVIHDAKSALSRNND 120
           S   MS+G +R FSEDV H P I+DPEI   FKDLMA +W ELP +V+ DAK ALS+N D
Sbjct: 59  SPFAMSLGSSRFFSEDVTHFPDIKDPEILNVFKDLMATNWDELPNAVVSDAKKALSKNTD 118

Query: 121 DKAGQEVLKNVFSAAEAVEEFIGIIMNIKMEFDDEIGLSGE 161
           DKAGQ++LKNVF AAEAVEEF G IM++KME DD IGLSGE
Sbjct: 119 DKAGQDILKNVFRAAEAVEEFGGKIMSLKMELDDIIGLSGE 159

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225458573|ref|XP_002284591.1| PREDICTED: uncharacterized protein At1g47420, mitochondrial [Vitis vinifera] gi|147811478|emb|CAN63226.1| hypothetical protein VITISV_002665 [Vitis vinifera] gi|302142337|emb|CBI19540.3| unnamed protein product [Vitis vinifera]

 Score =  184 bits (466), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 92/163 (56%), Positives = 117/163 (71%), Gaps = 4/163 (2%)

Query: 1   MEKIAVMSVRSIRRAACVRSSIIAAANNHH--LRHLSSSRSLFSLSSPAASIPSKSIPFD 58
           ME++ ++  RS+ R+A  RS   +A  NHH  LRH +SSRSLF+L +P A    +++P D
Sbjct: 1   MERMVLL--RSLFRSAAFRSCRFSAVVNHHQQLRHYASSRSLFNLFAPTAIASRQALPSD 58

Query: 59  CRSSLVMSIGCNRSFSEDVAHMPVIRDPEIQRAFKDLMAADWGELPASVIHDAKSALSRN 118
           CR+   +SIG  RSFSEDV+H+PVI+DPEIQ  FKDLMAA W ELP SVI  A   LS+N
Sbjct: 59  CRTPFAVSIGSTRSFSEDVSHLPVIKDPEIQTVFKDLMAASWDELPDSVISSANKVLSKN 118

Query: 119 NDDKAGQEVLKNVFSAAEAVEEFIGIIMNIKMEFDDEIGLSGE 161
            DDKAGQE L NVF AAEA  EF GI++ ++ME DD +G+SGE
Sbjct: 119 TDDKAGQEALANVFRAAEAAVEFGGILVTLRMEIDDLVGISGE 161

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255538368|ref|XP_002510249.1| conserved hypothetical protein [Ricinus communis] gi|223550950|gb|EEF52436.1| conserved hypothetical protein [Ricinus communis]

 Score =  174 bits (442), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 96/164 (58%), Positives = 120/164 (73%), Gaps = 9/164 (5%)

Query: 1   MEKIAVMSVRSIRRAACVRSSIIA-AANNHHL--RHLSSSRSLFSLSSPAASIPSKSIPF 57
           MEK  V+ +RSI RAAC RSS IA A   HHL   HLSSSRS+FSL+S +  + S    F
Sbjct: 1   MEKKMVL-LRSICRAACFRSSRIADAFTQHHLLPHHLSSSRSIFSLASSSNRVSSD---F 56

Query: 58  DCRSSLVMSIGCNRSFSEDVAHMPVIRDPEIQRAFKDLMAADWGELPASVIHDAKSALSR 117
             R S  M +G  R FSEDV  +P I+DP++++AFK+LMAA W ELP  +++D K ALS+
Sbjct: 57  GYRFS--MGVGNRRCFSEDVTRLPAIQDPQVKKAFKNLMAASWDELPDPLLYDVKIALSK 114

Query: 118 NNDDKAGQEVLKNVFSAAEAVEEFIGIIMNIKMEFDDEIGLSGE 161
           N DDK+GQ++LKNVF AAEAVEEF GI+M++KME DD IGLSGE
Sbjct: 115 NTDDKSGQDILKNVFRAAEAVEEFGGILMSLKMELDDNIGLSGE 158

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297852338|ref|XP_002894050.1| hypothetical protein ARALYDRAFT_473889 [Arabidopsis lyrata subsp. lyrata] gi|297339892|gb|EFH70309.1| hypothetical protein ARALYDRAFT_473889 [Arabidopsis lyrata subsp. lyrata]

 Score =  152 bits (383), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 79/150 (52%), Positives = 104/150 (69%), Gaps = 15/150 (10%)

Query: 27  NNHHLR-HLSSSRSLFS------LSSPAASIP---SKSIPFDC-----RSSLVMSIGCNR 71
            +HH+  HLS  RSL +      L +P+AS+      +I + C     + S  + +G  R
Sbjct: 31  GSHHIEEHLSRHRSLMTVVDKSPLVTPSASVTIGKGSAISYGCARRDLQYSRAIGVGQVR 90

Query: 72  SFSEDVAHMPVIRDPEIQRAFKDLMAADWGELPASVIHDAKSALSRNNDDKAGQEVLKNV 131
            FSEDV+HMP ++D ++  AFKDLMAADW ELP++V+ +AKSA+S+N DDKAGQE LKNV
Sbjct: 91  RFSEDVSHMPEMKDSDVLNAFKDLMAADWAELPSAVVRNAKSAISKNTDDKAGQEALKNV 150

Query: 132 FSAAEAVEEFIGIIMNIKMEFDDEIGLSGE 161
           F AAEAVEEF GI+ +IKME DD IG+SGE
Sbjct: 151 FRAAEAVEEFGGILTSIKMEIDDSIGMSGE 180

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18401719|ref|NP_564506.1| succinate dehydrogenase 5 [Arabidopsis thaliana] gi|25091506|sp|Q9SX77.1|UMP6_ARATH RecName: Full=Uncharacterized protein At1g47420, mitochondrial; Flags: Precursor gi|5668814|gb|AAD46040.1|AC007519_25 ESTs gb|H36253 and gb|AA04251 come from this gene [Arabidopsis thaliana] gi|12744995|gb|AAK06877.1|AF344326_1 unknown protein [Arabidopsis thaliana] gi|14334512|gb|AAK59453.1| unknown protein [Arabidopsis thaliana] gi|15450966|gb|AAK96754.1| Unknown protein [Arabidopsis thaliana] gi|17104551|gb|AAL34164.1| unknown protein [Arabidopsis thaliana] gi|21536627|gb|AAM60959.1| unknown [Arabidopsis thaliana] gi|23198274|gb|AAN15664.1| Unknown protein [Arabidopsis thaliana] gi|332194047|gb|AEE32168.1| succinate dehydrogenase 5 [Arabidopsis thaliana]

 Score =  150 bits (379), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 78/148 (52%), Positives = 101/148 (68%), Gaps = 14/148 (9%)

Query: 27  NNHHL-RHLSSSRSLFSLSSPAAS------------IPSKSIPFDCRSSLVMSIGCNRSF 73
            +HH+ +HLS  R+L +++ P AS            I   S+  D +    M +G  R F
Sbjct: 31  GSHHIEKHLSRHRTLITVA-PNASVIGDVQINKGSFISYASVSRDLQYPRAMGMGQVRRF 89

Query: 74  SEDVAHMPVIRDPEIQRAFKDLMAADWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFS 133
           SEDV+HMP + D ++  AFKDLMAADW ELP++V+ DAK+A+S+N DDKAGQE LKNVF 
Sbjct: 90  SEDVSHMPEMEDSDVLNAFKDLMAADWAELPSAVVKDAKTAISKNTDDKAGQEALKNVFR 149

Query: 134 AAEAVEEFIGIIMNIKMEFDDEIGLSGE 161
           AAEAVEEF GI+ +IKME DD IG+SGE
Sbjct: 150 AAEAVEEFGGILTSIKMEIDDSIGMSGE 177

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726377|ref|NP_001238404.1| uncharacterized protein LOC100527337 [Glycine max] gi|255632117|gb|ACU16411.1| unknown [Glycine max]

 Score =  142 bits (359), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 65/104 (62%), Positives = 83/104 (79%)

Query: 58  DCRSSLVMSIGCNRSFSEDVAHMPVIRDPEIQRAFKDLMAADWGELPASVIHDAKSALSR 117
           +CRS L M +G  R +SEDV HMP I+DP +  AFKDLMA  W ELP SVI D K+ALS+
Sbjct: 42  ECRSPLSMGLGSMRFYSEDVTHMPNIKDPVLYNAFKDLMAVSWSELPDSVISDVKNALSK 101

Query: 118 NNDDKAGQEVLKNVFSAAEAVEEFIGIIMNIKMEFDDEIGLSGE 161
           N DDKAG+EV++NVF AA+A+EEF GI++++K+EFDD IG+SGE
Sbjct: 102 NTDDKAGKEVVENVFCAAKAIEEFGGILISLKLEFDDSIGMSGE 145

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449470049|ref|XP_004152731.1| PREDICTED: uncharacterized protein At1g47420, mitochondrial-like [Cucumis sativus] gi|449496011|ref|XP_004160011.1| PREDICTED: uncharacterized protein At1g47420, mitochondrial-like [Cucumis sativus]

 Score =  140 bits (353), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 79/165 (47%), Positives = 106/165 (64%), Gaps = 8/165 (4%)

Query: 1   MEKIAVMSVRSIRRAACVRSSIIAAANNHHLRHLSS--SRSLFSLSS--PAASIPSKSIP 56
           MEK  ++  RS+ R+   RS  IA   + +L   +   +RS F LSS  P+ S   + + 
Sbjct: 1   MEKTVIL--RSLLRSVRARSYGIAGVTHRNLLQSNHQVARSFFYLSSHRPSFSDSPQRVS 58

Query: 57  FDCRSSLVMSIGCNRSFSEDVAHMPVIRDPEIQRAFKDLMAADWGELPASVIHDAKSALS 116
            DC  S    +G  R FS DV  MP I DP++Q  FKDLMAA W +LP +VI+D K+ALS
Sbjct: 59  SDC--SYPSGVGHARYFSADVVSMPTIEDPKLQNVFKDLMAASWDKLPEAVIYDVKTALS 116

Query: 117 RNNDDKAGQEVLKNVFSAAEAVEEFIGIIMNIKMEFDDEIGLSGE 161
            + DDKAG+E+++NVF AAEA EEF  +++N+KME DD IGLSGE
Sbjct: 117 GSTDDKAGKEIVENVFRAAEAAEEFGDMLINLKMEIDDSIGLSGE 161

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722341|ref|NP_001235705.1| uncharacterized protein LOC100527668 [Glycine max] gi|255632912|gb|ACU16810.1| unknown [Glycine max]

 Score =  139 bits (351), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 79/162 (48%), Positives = 103/162 (63%), Gaps = 11/162 (6%)

Query: 1   MEKIAVMSVRSIRRAACVRSSIIAAANNHH-LRHLSSSRSLFSLSSPAASIPSKSIPFDC 59
           MEK+  M +R + R+   RS       NH  LR    SRS   L SP+ S        +C
Sbjct: 1   MEKM--MRLRPLFRSLSCRSYHAFPFINHVVLRPSLISRSPNPLPSPSHS--------EC 50

Query: 60  RSSLVMSIGCNRSFSEDVAHMPVIRDPEIQRAFKDLMAADWGELPASVIHDAKSALSRNN 119
            S   M +G  R +SED+ H+P I+DP +  AFKDLMA  W ELP SV+ D K+ LS+N 
Sbjct: 51  MSPFSMGLGSMRFYSEDLTHVPNIKDPALYNAFKDLMAVSWSELPDSVVSDVKNVLSKNT 110

Query: 120 DDKAGQEVLKNVFSAAEAVEEFIGIIMNIKMEFDDEIGLSGE 161
           DDKAG+E ++NVF AAEA+EEF GI++++K+EFDD IGLSGE
Sbjct: 111 DDKAGKEAVENVFRAAEAIEEFGGILVSLKLEFDDSIGLSGE 152

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388502854|gb|AFK39493.1| unknown [Medicago truncatula]

 Score =  125 bits (314), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 58/104 (55%), Positives = 77/104 (74%)

Query: 58  DCRSSLVMSIGCNRSFSEDVAHMPVIRDPEIQRAFKDLMAADWGELPASVIHDAKSALSR 117
           +CRS     IG  R +SE+V HMP I+DPE+   FKDL+A +W +L  +V+ DAK ALS+
Sbjct: 55  ECRSPFSNGIGSMRFYSEEVTHMPDIKDPELYSVFKDLLAENWSDLSDAVVSDAKHALSK 114

Query: 118 NNDDKAGQEVLKNVFSAAEAVEEFIGIIMNIKMEFDDEIGLSGE 161
           + +D+AG+EV+ NVF AA+AVEEF GI+  +KME DD IGLSGE
Sbjct: 115 STEDEAGKEVVTNVFRAAQAVEEFGGILNTLKMEIDDSIGLSGE 158

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	163
TAIR|locus:2015428	257	SDH5 "AT1G47420" [Arabidopsis	0.638	0.404	0.634	5.4e-31

TAIR|locus:2015428 SDH5 "AT1G47420" [Arabidopsis thaliana (taxid:3702)]

 Score = 341 (125.1 bits), Expect = 5.4e-31, P = 5.4e-31
 Identities = 66/104 (63%), Positives = 81/104 (77%)

Query:    58 DCRSSLVMSIGCNRSFSEDVAHMPVIRDPEIQRAFKDLMAADWGELPASVIHDAKSALSR 117
             D +    M +G  R FSEDV+HMP + D ++  AFKDLMAADW ELP++V+ DAK+A+S+
Sbjct:    74 DLQYPRAMGMGQVRRFSEDVSHMPEMEDSDVLNAFKDLMAADWAELPSAVVKDAKTAISK 133

Query:   118 NNDDKAGQEVLKNVFSAAEAVEEFIGIIMNIKMEFDDEIGLSGE 161
             N DDKAGQE LKNVF AAEAVEEF GI+ +IKME DD IG+SGE
Sbjct:   134 NTDDKAGQEALKNVFRAAEAVEEFGGILTSIKMEIDDSIGMSGE 177


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.131   0.367    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      163       135   0.00091  102 3  11 22  0.39    31
                                                     30  0.44    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  557 (59 KB)
  Total size of DFA:  120 KB (2078 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.31u 0.10s 11.41t   Elapsed:  00:00:00
  Total cpu time:  11.31u 0.10s 11.41t   Elapsed:  00:00:00
  Start:  Fri May 10 16:28:32 2013   End:  Fri May 10 16:28:32 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005749 "mitochondrial respiratory chain complex II" evidence=IDA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0009853 "photorespiration" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

GO:0080129 "proteasome core complex assembly" evidence=RCA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00400264 SubName- Full=Putative uncharacterized protein; (240 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	163
pfam14290	238	pfam14290, DUF4370, Domain of unknown function (DU	3e-69
PLN02749	173	PLN02749, PLN02749, Uncharacterized protein At1g47	5e-47

>gnl|CDD|222654 pfam14290, DUF4370, Domain of unknown function (DUF4370)

 Score =  208 bits (532), Expect = 3e-69
 Identities = 99/163 (60%), Positives = 118/163 (72%), Gaps = 7/163 (4%)

Query: 1   MEKIAVMSVRSIRRAACVRSSIIAAANNHH--LRHLSSSRSLFSLSSPAASIPSKSIPFD 58
           MEK+  + +RS+ R+A  RSS  +AA+  H  LRH  SSRSLF L+SPA+      +  D
Sbjct: 1   MEKM--VLLRSLFRSAPFRSSRSSAASQGHHQLRHHLSSRSLFPLASPASP---SRLSSD 55

Query: 59  CRSSLVMSIGCNRSFSEDVAHMPVIRDPEIQRAFKDLMAADWGELPASVIHDAKSALSRN 118
           CR    MS G  R FSEDV H+P I+DPEI+ AFKDLMAA W ELP SV+ DAK ALS+N
Sbjct: 56  CRYPFAMSWGSRRFFSEDVTHLPAIKDPEIENAFKDLMAASWDELPDSVVSDAKKALSKN 115

Query: 119 NDDKAGQEVLKNVFSAAEAVEEFIGIIMNIKMEFDDEIGLSGE 161
            DDKAGQE LKNVF AAEAVEEF GI++++KME DD IGLSGE
Sbjct: 116 TDDKAGQEALKNVFRAAEAVEEFGGILVSLKMELDDLIGLSGE 158

Length = 238

>gnl|CDD|178350 PLN02749, PLN02749, Uncharacterized protein At1g47420

 Score =  150 bits (380), Expect = 5e-47
 Identities = 65/91 (71%), Positives = 76/91 (83%)

Query: 71  RSFSEDVAHMPVIRDPEIQRAFKDLMAADWGELPASVIHDAKSALSRNNDDKAGQEVLKN 130
           R FSEDV+H+P I DPEI +AFKDLMAA W ELP SV++DAK ALS+N DDKAGQE LKN
Sbjct: 3   RRFSEDVSHLPEISDPEILKAFKDLMAASWDELPDSVVNDAKKALSKNTDDKAGQEALKN 62

Query: 131 VFSAAEAVEEFIGIIMNIKMEFDDEIGLSGE 161
           VF AAEAVEEF G +++++ME DD IGLSGE
Sbjct: 63  VFRAAEAVEEFGGTLVSLRMEIDDLIGLSGE 93

Length = 173

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	163
PF14290	239	DUF4370: Domain of unknown function (DUF4370)	100.0
PLN02749	173	Uncharacterized protein At1g47420	100.0
PRK08230	299	tartrate dehydratase subunit alpha; Validated	80.35

>PF14290 DUF4370: Domain of unknown function (DUF4370)

Probab=100.00  E-value=1.8e-72  Score=470.02  Aligned_cols=159  Identities=60%  Similarity=0.894  Sum_probs=150.4

Q ss_pred             CchhhHHHHHHHHHHHhhhhhHHHhh--hhhhhhhhcccccccccCCCCCCCCCCCCCCCCCCcccccccccccccccCC
Q 031222            1 MEKIAVMSVRSIRRAACVRSSIIAAA--NNHHLRHLSSSRSLFSLSSPAASIPSKSIPFDCRSSLVMSIGCNRSFSEDVA   78 (163)
Q Consensus         1 mek~~m~~lrs~~r~a~~~s~~~~~~--~~~~~~~~ss~~sl~t~~~~~~~~ps~~~~~d~~~~~s~~~g~~R~fS~d~~   78 (163)
                      ||| ||+.||++||++|+||++.++.  .+|+++||.+.+++++++++.  .+. ++++||++||+||||+||+||+|++
T Consensus         1 m~~-~~~~lr~~~R~~~~~s~~~~~~~~~~~~~~~~~~~~s~~~l~~~~--~~~-~~~s~~~~~~a~s~~~~R~fS~d~~   76 (239)
T PF14290_consen    1 MEK-AMSALRSLLRSAALRSSRSSSASRSHHQIRHHLSSRSLFTLSSPS--SRN-RISSDCGGPFAMSWGSRRFFSEDVS   76 (239)
T ss_pred             Cch-HHHHHHHHHHHHHHHHhhhhhhhcchhhhhhhhhhccccCCCCcc--ccc-cccccccCCcccccchhhhcccccc
Confidence            887 5999999999999999987555  348899999999999999887  333 8899999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHcccCCCchhHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccC
Q 031222           79 HMPVIRDPEIQRAFKDLMAADWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEEFIGIIMNIKMEFDDEIGL  158 (163)
Q Consensus        79 hlP~i~Dpei~~afKdLmAasW~elp~svv~~akkalSk~tDDkAGqeaLknvfRAAeAvEeFgGiL~sLrmeiDDl~Gl  158 (163)
                      |||+|+||+|++|||||||+||+|||++||++|||||||||||+|||||||||||||||||||||+|++|||||||||||
T Consensus        77 hlP~i~Dp~i~~afKdLmAasW~elp~svv~~akkalSk~tdD~AGqeaL~nvfRAAeAvEeFgG~L~tLrm~idDl~Gl  156 (239)
T PF14290_consen   77 HLPAISDPEIEKAFKDLMAASWDELPDSVVNEAKKALSKNTDDKAGQEALKNVFRAAEAVEEFGGILVTLRMEIDDLCGL  156 (239)
T ss_pred             cCCCCCCHHHHHHHHHHHhcchhhCCHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCC
Q 031222          159 SGEVL  163 (163)
Q Consensus       159 SGEnv  163 (163)
                      |||||
T Consensus       157 sGEnv  161 (239)
T PF14290_consen  157 SGENV  161 (239)
T ss_pred             CCCCC
Confidence            99998

>PLN02749 Uncharacterized protein At1g47420

Probab=100.00  E-value=1e-55  Score=356.39  Aligned_cols=95  Identities=68%  Similarity=1.026  Sum_probs=94.0

Q ss_pred             ccccccccCCCCCCCCCHHHHHHHHHHHHcccCCCchhHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031222           69 CNRSFSEDVAHMPVIRDPEIQRAFKDLMAADWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEEFIGIIMNI  148 (163)
Q Consensus        69 ~~R~fS~d~~hlP~i~Dpei~~afKdLmAasW~elp~svv~~akkalSk~tDDkAGqeaLknvfRAAeAvEeFgGiL~sL  148 (163)
                      ++|+||+|++|||+|+||+|++|||||||+||+|||++|+++||||||||||||||||||+||||||||||||||+|++|
T Consensus         1 ~~R~fs~d~~~lP~i~Dp~i~~afkdLma~sW~elp~sv~~~~kkalsk~tddkagqeaL~nvfrAAeAveeFgG~L~sL   80 (173)
T PLN02749          1 LRRRFSEDVSHLPEISDPEILKAFKDLMAASWDELPDSVVNDAKKALSKNTDDKAGQEALKNVFRAAEAVEEFGGTLVSL   80 (173)
T ss_pred             CccccccccccCCCCCCHHHHHHHHHHHhcchhhCChHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhccCCCCCC
Q 031222          149 KMEFDDEIGLSGEVL  163 (163)
Q Consensus       149 rmeiDDl~GlSGEnv  163 (163)
                      |||||||||+|||||
T Consensus        81 rmeidDl~GlsGEnv   95 (173)
T PLN02749         81 RMEIDDLIGLSGENV   95 (173)
T ss_pred             HHHHHHhcCCCCCCC
Confidence            999999999999997

>PRK08230 tartrate dehydratase subunit alpha; Validated

Probab=80.35  E-value=4.2  Score=36.06  Aligned_cols=53  Identities=11%  Similarity=0.152  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHcccCCCchhHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHH
Q 031222           87 EIQRAFKDLMAADWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEE  140 (163)
Q Consensus        87 ei~~afKdLmAasW~elp~svv~~akkalSk~tDDkAGqeaLknvfRAAeAvEe  140 (163)
                      +|.++.++|+-..=..||+.|+...|+|..+-+ +..+|.+|++.+.-++..++
T Consensus         9 ~i~~~v~~l~~~a~~~lp~Dv~~al~~a~~~E~-s~~ak~~L~~ileN~~iA~~   61 (299)
T PRK08230          9 KLTDIMAKFTAYISKRLPDDVTAKLKELKDAET-SPLAKIIYDTMFENQQLAID   61 (299)
T ss_pred             HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhC-CHHHHHHHHHHHHHHHHHhc
Confidence            488999999999999999999999999999954 45579999999988887664

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00