Citrus Sinensis ID: 031227

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160---

MQHKVPLRQHFWHQPSANVEGMKRKGAYCTLHMAQMWGLFEKQFGRTDAQEPDPEGRVPQWEKATVQEMKDKFSAIGLGPRQLAVMSAFLGPDQAATEALLATDKDVSPWVQKYQRSRETVSQTDYEVDLITTFTKLSSLGQQINYEAYTYPAQKIELSKLKL

cccccHHHHHHHHccccccccccccccEEEEEcccccHHHHHHHcccccccccccccccccccccHHHHHHHHHHccccccHHHHHHccccccHHHHHHHHHcccccHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccccccccccccccccccccccc

cccccHHHHHHHHHHHHHcccccccccEEEEccccccccEEccccccccccccccccccccccccHHHHHHHHHHHcccHcHHEEHHHcccccHHHHHHHHHccccccHHHHHccccccccccccHHHHHHHHHHHHHHccccccccHcccccccEEcccccc

mqhkvplrqhfwhqpsanvegmkrkgaYCTLHMAQMWGLFekqfgrtdaqepdpegrvpqwEKATVQEMKDKfsaiglgprQLAVMSAFLGPDQAATEALLAtdkdvspwvqkyqrsretvsqtDYEVDLITTFTKLSSLGQQINYEAYTYPAQKIELSKLKL

mqhkvplrqhfwhqpsanveGMKRKGAYCTLHMAQMWGLFEKQFGRTDAQEPDPEGRVPQWEKATVQEMKDKFSAIGLGPRQLAVMSAFLGPDQAATEALLatdkdvspwvqkyqrsretvsqtdyEVDLITTFTKLSSLGQQINYEaytypaqkielsklkl

MQHKVPLRQHFWHQPSANVEGMKRKGAYCTLHMAQMWGLFEKQFGRTDAQEPDPEGRVPQWEKATVQEMKDKFSAIGLGPRQLAVMSAFLGPDQAATEALLATDKDVSPWVQKYQRSRETVSQTDYEVDLITTFTKLSSLGQQINYEAYTYPAQKIELSKLKL

**********FWH*****VEGMKRKGAYCTLHMAQMWGLFEKQF****************************FSAIGLGPRQLAVMSAFLGPDQAATEALLATDKDVSPWVQKYQRSRETVSQTDYEVDLITTFTKLSSLGQQINYEAYTYPAQ*********

*********HFWHQPS*****MKRKGAYCTLHMAQMWGLFEKQFGR*********GRVPQWEKATVQEMKDKFSAIGLGPRQLAVMSAFLGPDQAATEALLATDKDVSPWVQKYQRSRETVSQTDYEVDLITTFTKLSSLGQQINYEAYTYPAQKIELSKLKL

MQHKVPLRQHFWHQPSANVEGMKRKGAYCTLHMAQMWGLFEKQFGR************PQWEKATVQEMKDKFSAIGLGPRQLAVMSAFLGPDQAATEALLATDKDVSPWVQKYQRSRETVSQTDYEVDLITTFTKLSSLGQQINYEAYTYPAQKIELSKLKL

***KVPLRQHFWHQPSANVEGMKRKGAYCTLHMAQMWGLFEKQFGRTDAQE*DPEGRVPQWEKATVQEMKDKFSAIGLGPRQLAVMSAFLGPDQAATEALLATDKDVSPWVQKYQRSRETVSQTDYEVDLITTFTKLSSLGQQINYEAYTYPAQKIELS*L**

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MQHKVPLRQHFWHQPSANVEGMKRKGAYCTLHMAQMWGLFEKQFGRTDAQEPDPEGRVPQWEKATVQEMKDKFSAIGLGPRQLAVMSAFLGPDQAATEALLATDKDVSPWVQKYQRSRETVSQTDYEVDLITTFTKLSSLGQQINYEAYTYPAQKIELSKLKL

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		163	2.2.26 [Sep-21-2011]
P82281		349	Thylakoid lumenal 29 kDa	yes	no	0.877	0.409	0.772	4e-61
Q9THX6		345	Thylakoid lumenal 29 kDa	N/A	no	0.963	0.455	0.685	2e-59

>sp\|P82281\|TL29_ARATH Thylakoid lumenal 29 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=TL29 PE=1 SV=2	Back alignment and function desciption

 Score =  233 bits (594), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 112/145 (77%), Positives = 121/145 (83%), Gaps = 2/145 (1%)

Query: 21  GMKRKGA--YCTLHMAQMWGLFEKQFGRTDAQEPDPEGRVPQWEKATVQEMKDKFSAIGL 78
           G + KG   Y     A  WGLF++ FGR+DA E DPEGRVPQW KATVQEMKDKF A+GL
Sbjct: 205 GNEEKGNLLYTAYGSAGQWGLFDRNFGRSDATEADPEGRVPQWGKATVQEMKDKFIAVGL 264

Query: 79  GPRQLAVMSAFLGPDQAATEALLATDKDVSPWVQKYQRSRETVSQTDYEVDLITTFTKLS 138
           GPRQLAVMSAFLGPDQAATE LLATD  V+PWVQKYQRSRETVSQTDYEVDLIT FTKLS
Sbjct: 265 GPRQLAVMSAFLGPDQAATEQLLATDPQVAPWVQKYQRSRETVSQTDYEVDLITAFTKLS 324

Query: 139 SLGQQINYEAYTYPAQKIELSKLKL 163
            LGQQIN+EAYTYP ++I LSKLKL
Sbjct: 325 CLGQQINFEAYTYPVERINLSKLKL 349

Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: -EC: .EC: -EC: .EC: -

>sp\|Q9THX6\|TL29_SOLLC Thylakoid lumenal 29 kDa protein, chloroplastic OS=Solanum lycopersicum GN=CLEB3J9 PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		163
380863110		341	APX [Dimocarpus longan]	0.779	0.372	0.921	5e-65
224082097		332	predicted protein [Populus trichocarpa]	0.877	0.430	0.827	1e-64
255545816		232	peroxidase, putative [Ricinus communis]	0.877	0.616	0.806	9e-62
302141995		344	unnamed protein product [Vitis vinifera]	0.779	0.369	0.858	5e-61
15236678		349	ascorbate peroxidase 4 [Arabidopsis thal	0.877	0.409	0.772	2e-59
449436992		368	PREDICTED: thylakoid lumenal 29 kDa prot	0.877	0.388	0.758	6e-59
356500717		347	PREDICTED: thylakoid lumenal 29 kDa prot	0.865	0.406	0.773	7e-59
297808959		337	hypothetical protein ARALYDRAFT_489709 [	0.877	0.424	0.765	5e-58
11387206		345	RecName: Full=Thylakoid lumenal 29 kDa p	0.963	0.455	0.685	1e-57
342351105		268	Chain A, Crystal Structure Of The Tl29 P	0.877	0.533	0.758	2e-57

>gi\|380863110\|gb\|AFF18848.1\| APX [Dimocarpus longan]	Back alignment and taxonomy information

 Score =  251 bits (642), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 117/127 (92%), Positives = 123/127 (96%)

Query: 37  WGLFEKQFGRTDAQEPDPEGRVPQWEKATVQEMKDKFSAIGLGPRQLAVMSAFLGPDQAA 96
           WGLF++QFGRTDA EPDPEGR+PQWEKATVQEMKDKF+AIG GPRQLAVMSAFLGPDQAA
Sbjct: 215 WGLFDRQFGRTDALEPDPEGRIPQWEKATVQEMKDKFTAIGFGPRQLAVMSAFLGPDQAA 274

Query: 97  TEALLATDKDVSPWVQKYQRSRETVSQTDYEVDLITTFTKLSSLGQQINYEAYTYPAQKI 156
           TEALLATDKDVSPWV+KYQRSRETVSQTDYEVDLITT TKLSSLGQQINYEAYTYP +KI
Sbjct: 275 TEALLATDKDVSPWVEKYQRSRETVSQTDYEVDLITTLTKLSSLGQQINYEAYTYPVRKI 334

Query: 157 ELSKLKL 163
           ELSKLKL
Sbjct: 335 ELSKLKL 341

Source: Dimocarpus longan

Species: Dimocarpus longan

Genus: Dimocarpus

Family: Sapindaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224082097\|ref\|XP_002306565.1\| predicted protein [Populus trichocarpa] gi\|222856014\|gb\|EEE93561.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|255545816\|ref\|XP_002513968.1\| peroxidase, putative [Ricinus communis] gi\|223547054\|gb\|EEF48551.1\| peroxidase, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|302141995\|emb\|CBI19198.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi|15236678|ref|NP_192640.1| ascorbate peroxidase 4 [Arabidopsis thaliana] gi|12644689|sp|P82281.2|TL29_ARATH RecName: Full=Thylakoid lumenal 29 kDa protein, chloroplastic; Short=TL29; AltName: Full=AtAPx07; AltName: Full=P29; AltName: Full=Probable L-ascorbate peroxidase 4; Flags: Precursor gi|13899079|gb|AAK48961.1|AF370534_1 Putative L-ascorbate peroxidase [Arabidopsis thaliana] gi|7267543|emb|CAB78025.1| putative protein [Arabidopsis thaliana] gi|18377504|gb|AAL66918.1| putative L-ascorbate peroxidase [Arabidopsis thaliana] gi|332657311|gb|AEE82711.1| ascorbate peroxidase 4 [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|449436992\|ref\|XP_004136276.1\| PREDICTED: thylakoid lumenal 29 kDa protein, chloroplastic-like [Cucumis sativus] gi\|449496987\|ref\|XP_004160282.1\| PREDICTED: thylakoid lumenal 29 kDa protein, chloroplastic-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356500717\|ref\|XP_003519178.1\| PREDICTED: thylakoid lumenal 29 kDa protein, chloroplastic-like [Glycine max]	Back alignment and taxonomy information

>gi\|297808959\|ref\|XP_002872363.1\| hypothetical protein ARALYDRAFT_489709 [Arabidopsis lyrata subsp. lyrata] gi\|297318200\|gb\|EFH48622.1\| hypothetical protein ARALYDRAFT_489709 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|11387206\|sp\|Q9THX6.1\|TL29_SOLLC RecName: Full=Thylakoid lumenal 29 kDa protein, chloroplastic; Short=TL29; AltName: Full=LeAPx09; AltName: Full=P29; Flags: Precursor gi\|6634469\|emb\|CAB64343.1\| putative ascorbate peroxidase (TL29) [Solanum lycopersicum]	Back alignment and taxonomy information

>gi\|342351105\|pdb\|3RRW\|A Chain A, Crystal Structure Of The Tl29 Protein From Arabidopsis Thaliana gi\|342351106\|pdb\|3RRW\|B Chain B, Crystal Structure Of The Tl29 Protein From Arabidopsis Thaliana	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		163
TAIR\|locus:2122333		349	TL29 "AT4G09010" [Arabidopsis	0.877	0.409	0.772	1.8e-55

TAIR\|locus:2122333 TL29 "AT4G09010" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 572 (206.4 bits), Expect = 1.8e-55, P = 1.8e-55
 Identities = 112/145 (77%), Positives = 121/145 (83%)

Query:    21 GMKRKG--AYCTLHMAQMWGLFEKQFGRTDAQEPDPEGRVPQWEKATVQEMKDKFSAIGL 78
             G + KG   Y     A  WGLF++ FGR+DA E DPEGRVPQW KATVQEMKDKF A+GL
Sbjct:   205 GNEEKGNLLYTAYGSAGQWGLFDRNFGRSDATEADPEGRVPQWGKATVQEMKDKFIAVGL 264

Query:    79 GPRQLAVMSAFLGPDQAATEALLATDKDVSPWVQKYQRSRETVSQTDYEVDLITTFTKLS 138
             GPRQLAVMSAFLGPDQAATE LLATD  V+PWVQKYQRSRETVSQTDYEVDLIT FTKLS
Sbjct:   265 GPRQLAVMSAFLGPDQAATEQLLATDPQVAPWVQKYQRSRETVSQTDYEVDLITAFTKLS 324

Query:   139 SLGQQINYEAYTYPAQKIELSKLKL 163
              LGQQIN+EAYTYP ++I LSKLKL
Sbjct:   325 CLGQQINFEAYTYPVERINLSKLKL 349


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.130   0.389    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      163       163   0.00084  107 3  11 22  0.39    32
                                                     30  0.44    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  589 (63 KB)
  Total size of DFA:  160 KB (2096 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.53u 0.10s 15.63t   Elapsed:  00:00:00
  Total cpu time:  15.54u 0.10s 15.64t   Elapsed:  00:00:00
  Start:  Mon May 20 20:52:42 2013   End:  Mon May 20 20:52:42 2013

GO:0004601 "peroxidase activity" evidence=ISS

GO:0006979 "response to oxidative stress" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009543 "chloroplast thylakoid lumen" evidence=IDA

GO:0031977 "thylakoid lumen" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0016688 "L-ascorbate peroxidase activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009637 "response to blue light" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010114 "response to red light" evidence=RCA

GO:0010218 "response to far red light" evidence=RCA

GO:0015979 "photosynthesis" evidence=RCA

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0019760 "glucosinolate metabolic process" evidence=RCA

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P82281	TL29_ARATH	1, ., -, ., -, ., -	0.7724	0.8773	0.4097	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.V.4773.1	hypothetical protein (319 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.XVI.1375.1	L-gulono-1,4-lactone dehydrogenase (EC-1.3.2.3) (553 aa)		•	0.899
	estExt_fgenesh4_pm.C_280146	SubName- Full=Putative uncharacterized protein; (434 aa)		•	0.899
	estExt_fgenesh4_pg.C_LG_I2142	hypothetical protein (478 aa)		•	0.899
	estExt_Genewise1_v1.C_LG_III1082	SubName- Full=Putative uncharacterized protein; (144 aa)	•		0.404

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		163
cd00314		255	cd00314, plant_peroxidase_like, Heme-dependent per	3e-10
pfam00141		180	pfam00141, peroxidase, Peroxidase	4e-09
PLN02879		251	PLN02879, PLN02879, L-ascorbate peroxidase	3e-04

>gnl\|CDD\|173823 cd00314, plant_peroxidase_like, Heme-dependent peroxidases similar to plant peroxidases	Back alignment and domain information

 Score = 56.4 bits (136), Expect = 3e-10
 Identities = 31/161 (19%), Positives = 48/161 (29%), Gaps = 33/161 (20%)

Query: 32  HMAQMWGLFEKQFGRTDAQE-----PDPEGRVPQWEKATVQEMKDKFSAIGLGPRQLAVM 86
                  L   +FGR DA E     PDPEG +P  E ++  E++DKF  +GL P +L  +
Sbjct: 96  STFGGGPLIPFRFGRLDATEPDLGVPDPEGLLPN-ETSSATELRDKFKRMGLSPSELVAL 154

Query: 87  SA----FLG-----PDQAATEALLATD-------------KDVSPWVQKYQRS----RET 120
           SA      G             L  +                   W              
Sbjct: 155 SAGAHTLGGKNHGDLLNYEGSGLWTSTPFTFDNAYFKNLLDMNWEWRVGSPDPDGVKGPG 214

Query: 121 VSQTDYEVDL-ITTFTKLSSLGQQINYEAYTYPAQKIELSK 160
           +  +DY +     T   +             +    I++  
Sbjct: 215 LLPSDYALLSDSETRALVERYASDQEKFFEDFAKAWIKMVN 255

Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX), which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions. Several sub-families can be identified. Class I includes intracellular peroxidases present in fungi, plants, archaea and bacteria, called catalase-peroxidases, that can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. Catalase-peroxidases are typically comprised of two homologous domains that probably arose via a single gene duplication event. Class II includes ligninase and other extracellular fungal peroxidases, while class III is comprised of classic extracellular plant peroxidases, like horseradish peroxidase. Length = 255

>gnl\|CDD\|215745 pfam00141, peroxidase, Peroxidase	Back alignment and domain information

>gnl\|CDD\|178467 PLN02879, PLN02879, L-ascorbate peroxidase	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		163
PLN03030		324	cationic peroxidase; Provisional	99.97
cd00693		298	secretory_peroxidase Horseradish peroxidase and re	99.97
PLN02608		289	L-ascorbate peroxidase	99.96
cd00691		253	ascorbate_peroxidase Ascorbate peroxidases and cyt	99.96
PLN02879		251	L-ascorbate peroxidase	99.96
PLN02364		250	L-ascorbate peroxidase 1	99.96
cd00692		328	ligninase Ligninase and other manganese-dependent	99.95
cd00314		255	plant_peroxidase_like Heme-dependent peroxidases s	99.88
PF00141		230	peroxidase: Peroxidase; InterPro: IPR002016 Peroxi	99.84
TIGR00198		716	cat_per_HPI catalase/peroxidase HPI. Note that the	99.82
cd00649		409	catalase_peroxidase_1 N-terminal catalytic domain	99.81
PRK15061		726	catalase/hydroperoxidase HPI(I); Provisional	99.66
cd08200		297	catalase_peroxidase_2 C-terminal non-catalytic dom	99.52
cd08201		264	plant_peroxidase_like_1 Uncharacterized family of	99.43
PRK15061		726	catalase/hydroperoxidase HPI(I); Provisional	99.26
TIGR00198		716	cat_per_HPI catalase/peroxidase HPI. Note that the	99.17
COG0376		730	KatG Catalase (peroxidase I) [Inorganic ion transp	98.43
COG0376		730	KatG Catalase (peroxidase I) [Inorganic ion transp	89.65
PF11895		80	DUF3415: Domain of unknown function (DUF3415); Int	85.59

>PLN03030 cationic peroxidase; Provisional	Back alignment and domain information

Probab=99.97  E-value=6.4e-32  Score=234.23  Aligned_cols=131  Identities=20%  Similarity=0.336  Sum_probs=107.4

Q ss_pred             HHHHHhh-CCCCcccceeeec--------cCCcccccccccCCCCCCCCCCCC--CCCCCCcccCHHHHHHHHHhCCCCh
Q 031227           12 WHQPSAN-VEGMKRKGAYCTL--------HMAQMWGLFEKQFGRTDAQEPDPE--GRVPQWEKATVQEMKDKFSAIGLGP   80 (163)
Q Consensus        12 ~~~~~~~-c~g~vsca~~la~--------g~~~~w~v~~v~~GRrDg~~s~~~--~~LP~~p~~~~~~L~~~F~~kGL~~   80 (163)
                      ||+++|+ |||+||||++++.        ..||.|+|   ++|||||++|.++  ++||+ |+.++++|++.|+++||+.
T Consensus       102 iK~~~e~~CPg~VSCADilalAarDaV~~~gGP~~~v---~~GRrDg~~s~~~~~~~LP~-p~~~~~~l~~~F~~~Gl~~  177 (324)
T PLN03030        102 AKTQLEAACPGVVSCADILALAARDSVVLTNGLTWPV---PTGRRDGRVSLASDASNLPG-FTDSIDVQKQKFAAKGLNT  177 (324)
T ss_pred             HHHHHHhhCCCcccHHHHHHHHhhccccccCCCceee---eccccCCCCCCcccccCCcC-CCCCHHHHHHHHHHcCCCH
Confidence            6777775 9999999965542        12445766   9999999987533  57999 9999999999999999999


Q ss_pred             hcceeeec-----------CC-------------C-------------------------------C---C---------
Q 031227           81 RQLAVMSA-----------FL-------------G-------------------------------P---D---------   93 (163)
Q Consensus        81 ~DlVaLsG-----------F~-------------~-------------------------------p---D---------   93 (163)
                      +|||+|||           |.             +                               |   |         
T Consensus       178 ~DlVaLsGAHTiG~ahC~~f~~Rlynf~~~~~~~Dp~~d~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDn~Yy~nll~  257 (324)
T PLN03030        178 QDLVTLVGGHTIGTTACQFFRYRLYNFTTTGNGADPSIDASFVPQLQALCPQNGDGSRRIALDTGSSNRFDASFFSNLKN  257 (324)
T ss_pred             HHheeeeeccccceeeeeccccccccccCCCCCCCCchhHHHHHHHhccCCCCCCCCccccCCCCCCcccccHHHHHHHh
Confidence            99999999           20             0                               0   1         


Q ss_pred             --C-chhHHHhccCCCcHHHHHHHhhcCCCCChHHHHHHHHHHHHHHhcCCCCCCCC
Q 031227           94 --Q-AATEALLATDKDVSPWVQKYQRSRETVSQTDYEVDLITTFTKLSSLGQQINYE  147 (163)
Q Consensus        94 --~-L~SDq~L~~D~~t~~~V~~yA~~~~~~~~~~Ff~dFa~AmvKMg~lgv~~~~~  147 (163)
                        | |+|||+|+.|++|+.+|+.||.|+. ..++.|+++|++||+|||+|||..+.+
T Consensus       258 ~rGlL~SDq~L~~d~~T~~~V~~~A~~~~-~~~~~F~~~Fa~AmvKMg~i~VlTG~~  313 (324)
T PLN03030        258 GRGILESDQKLWTDASTRTFVQRFLGVRG-LAGLNFNVEFGRSMVKMSNIGVKTGTN  313 (324)
T ss_pred             cCCCcCCchHhhcCccHHHHHHHHhcccc-cchhhhHHHHHHHHHHHccCCCCCCCC
Confidence              3 8999999999999999999998750 012599999999999999999988654

>cd00693 secretory_peroxidase Horseradish peroxidase and related secretory plant peroxidases	Back alignment and domain information

>PLN02608 L-ascorbate peroxidase	Back alignment and domain information

>cd00691 ascorbate_peroxidase Ascorbate peroxidases and cytochrome C peroxidases	Back alignment and domain information

>PLN02879 L-ascorbate peroxidase	Back alignment and domain information

>PLN02364 L-ascorbate peroxidase 1	Back alignment and domain information

>cd00692 ligninase Ligninase and other manganese-dependent fungal peroxidases	Back alignment and domain information

>cd00314 plant_peroxidase_like Heme-dependent peroxidases similar to plant peroxidases	Back alignment and domain information

>PF00141 peroxidase: Peroxidase; InterPro: IPR002016 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions	Back alignment and domain information

>TIGR00198 cat_per_HPI catalase/peroxidase HPI	Back alignment and domain information

>cd00649 catalase_peroxidase_1 N-terminal catalytic domain of catalase-peroxidases	Back alignment and domain information

>PRK15061 catalase/hydroperoxidase HPI(I); Provisional	Back alignment and domain information

>cd08200 catalase_peroxidase_2 C-terminal non-catalytic domain of catalase-peroxidases	Back alignment and domain information

>cd08201 plant_peroxidase_like_1 Uncharacterized family of plant peroxidase-like proteins	Back alignment and domain information

>PRK15061 catalase/hydroperoxidase HPI(I); Provisional	Back alignment and domain information

>TIGR00198 cat_per_HPI catalase/peroxidase HPI	Back alignment and domain information

>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]	Back alignment and domain information

>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]	Back alignment and domain information

>PF11895 DUF3415: Domain of unknown function (DUF3415); InterPro: IPR024589 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		163
3rrw_A		268	Crystal Structure Of The Tl29 Protein From Arabidop		3e-60

>pdb|3RRW|A Chain A, Crystal Structure Of The Tl29 Protein From Arabidopsis Thaliana Length = 268

Back alignment and structure

Iteration: 1

Score = 226 bits (577), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 110/145 (75%), Positives = 119/145 (82%), Gaps = 2/145 (1%) Query: 21 GMKRKGA--YCTLHMAQMWGLFEKQFGRTDAQEPDPEGRVPQWEKATVQEMKDKFSAIGL 78 G + KG Y A WGLF++ FGR+DA E DPEGRVPQW KATVQE KDKF A+GL Sbjct: 124 GNEEKGNLLYTAYGSAGQWGLFDRNFGRSDATEADPEGRVPQWGKATVQEXKDKFIAVGL 183 Query: 79 GPRQLAVMSAFLGPDQAATEALLATDKDVSPWVQKYQRSRETVSQTDYEVDLITTFTKLS 138 GPRQLAV SAFLGPDQAATE LLATD V+PWVQKYQRSRETVSQTDYEVDLIT FTKLS Sbjct: 184 GPRQLAVXSAFLGPDQAATEQLLATDPQVAPWVQKYQRSRETVSQTDYEVDLITAFTKLS 243 Query: 139 SLGQQINYEAYTYPAQKIELSKLKL 163 LGQQIN+EAYTYP ++I LSKLKL Sbjct: 244 CLGQQINFEAYTYPVERINLSKLKL 268

PyMOL of 3rrw

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		163
3rrw_A		268	Thylakoid lumenal 29 kDa protein, chloroplastic; c	1e-47
3fmu_A		331	VersatIle peroxidase VPL2; class II (fungal) perox	1e-04
2e39_A		344	Peroxidase; heme protein, coordination geometry of	3e-04
3q3u_A		338	Lignin peroxidase; oxidoreductase; HET: HEM; 1.85A	3e-04

>3rrw_A Thylakoid lumenal 29 kDa protein, chloroplastic; chloroplast thylakoid lumen, plant protein; 2.50A {Arabidopsis thaliana} Length = 268	Back alignment and structure

 Score =  154 bits (391), Expect = 1e-47
 Identities = 107/127 (84%), Positives = 115/127 (90%)

Query: 37  WGLFEKQFGRTDAQEPDPEGRVPQWEKATVQEMKDKFSAIGLGPRQLAVMSAFLGPDQAA 96
           WGLF++ FGR+DA E DPEGRVPQW KATVQEMKDKF A+GLGPRQLAVMSAFLGPDQAA
Sbjct: 142 WGLFDRNFGRSDATEADPEGRVPQWGKATVQEMKDKFIAVGLGPRQLAVMSAFLGPDQAA 201

Query: 97  TEALLATDKDVSPWVQKYQRSRETVSQTDYEVDLITTFTKLSSLGQQINYEAYTYPAQKI 156
           TE LLATD  V+PWVQKYQRSRETVSQTDYEVDLIT FTKLS LGQQIN+EAYTYP ++I
Sbjct: 202 TEQLLATDPQVAPWVQKYQRSRETVSQTDYEVDLITAFTKLSCLGQQINFEAYTYPVERI 261

Query: 157 ELSKLKL 163
            LSKLKL
Sbjct: 262 NLSKLKL 268

PyMOL of 3rrw

>3fmu_A VersatIle peroxidase VPL2; class II (fungal) peroxidases, protoporphyrin IX, electron T lignin peroxidase, lignin degradation; HET: HEM; 1.04A {Pleurotus eryngii} PDB: 3fjw_A* 2boq_A* 3fm1_A* 3fm4_A* 3fm6_A* 3fkg_A* 2w23_A* 2vka_A* Length = 331	Back alignment and structure

>2e39_A Peroxidase; heme protein, coordination geometry of heme iron, ARP, perox oxidoreductase; HET: NAG MAN HEM; 1.30A {'arthromyces ramosus'} SCOP: a.93.1.1 PDB: 1arp_A* 1arv_A* 1arw_A* 1arx_A* 1ary_A* 1c8i_A* 1ck6_A* 1gza_A* 1gzb_A* 1hsr_A* 1aru_A* 2e3a_A* 2e3b_A* 1lyk_A* 1lyc_A* 1ly9_A* 1h3j_A* 1ly8_A* Length = 344	Back alignment and structure

>3q3u_A Lignin peroxidase; oxidoreductase; HET: HEM; 1.85A {Trametes cervina} Length = 338	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		163
3rrw_A		268	Thylakoid lumenal 29 kDa protein, chloroplastic; c	100.0
3hdl_A		304	Royal PALM TREE peroxidase; glycosylated, oxidored	99.98
1sch_A		294	PNP, peanut peroxidase, major cationic isozyme; ca	99.97
1fhf_A		304	SEED coat peroxidase; oxidoreductase; HET: HEM; 2.	99.97
1pa2_A		306	Peroxidase, ATP A2; oxidoreductase; HET: HEM; 1.45	99.97
1gwu_A		309	Peroxidase C1A; oxidoreductase, glycoprotein, heme	99.97
1qgj_A		300	Peroxidase N; oxidoreductase; HET: HEM GSH; 1.90A	99.97
1bgp_A		309	Barley grain peroxidase; chromoprotein, oxidoreduc	99.97
2vcn_A		261	Ascorbate peroxidase; INH, APX, isoniazid, oxidore	99.97
3riv_A		271	Ascorbate peroxidase; alpha helical bundle, heme p	99.96
1iyn_A		295	Chloroplastic ascorbate peroxidase; hydrogen perox	99.94
3e2o_A		294	CCP, cytochrome C peroxidase; cytochrome C peroxid	99.94
3m5q_A		357	Manganese peroxidase 1; heme, Mn(II)-binding site,	99.94
3fmu_A		331	VersatIle peroxidase VPL2; class II (fungal) perox	99.94
3q3u_A		338	Lignin peroxidase; oxidoreductase; HET: HEM; 1.85A	99.93
2e39_A		344	Peroxidase; heme protein, coordination geometry of	99.93
1llp_A		343	LIP4.15, lignin peroxidase; heme protein, glyco pr	99.92
1u2k_A		309	Peroxidase/catalase HPI; KATG, catalase-peroxidase	99.91
2cca_A		740	Peroxidase/catalase T; oxidoreductase, catalase-pe	99.89
1itk_A		731	Catalase-peroxidase; heme protein, oxidoreductase;	99.88
1ub2_A		720	Catalase-peroxidase; KATG, cyanobacteria, oxidored	99.88
1itk_A		731	Catalase-peroxidase; heme protein, oxidoreductase;	99.88
3vli_A		737	Catalase-peroxidase 2; oxidoreductase; HET: HEM; 1	99.87
3vli_A		737	Catalase-peroxidase 2; oxidoreductase; HET: HEM; 1	99.87
3ut2_A		764	Catalase-peroxidase 2; KATG, fungal, heme enzyme,	99.87
3n3r_A		748	Catalase-peroxidase; E198A variant, tuberclosis, i	99.87
3n3r_A		748	Catalase-peroxidase; E198A variant, tuberclosis, i	99.86
2cca_A		740	Peroxidase/catalase T; oxidoreductase, catalase-pe	99.85
1ub2_A		720	Catalase-peroxidase; KATG, cyanobacteria, oxidored	99.84
3ut2_A		764	Catalase-peroxidase 2; KATG, fungal, heme enzyme,	99.84

>3rrw_A Thylakoid lumenal 29 kDa protein, chloroplastic; chloroplast thylakoid lumen, plant protein; 2.50A {Arabidopsis thaliana}	Back alignment and structure

Probab=100.00  E-value=7.4e-45  Score=306.80  Aligned_cols=126  Identities=83%  Similarity=1.259  Sum_probs=110.1

Q ss_pred             cccccccCCCCCCCCCCCCCCCCCCcc-cCHHHHHHHHHhCCCChhcceeeecCCCCCCchhHHHhccCCCcHHHHHHHh
Q 031227           37 WGLFEKQFGRTDAQEPDPEGRVPQWEK-ATVQEMKDKFSAIGLGPRQLAVMSAFLGPDQAATEALLATDKDVSPWVQKYQ  115 (163)
Q Consensus        37 w~v~~v~~GRrDg~~s~~~~~LP~~p~-~~~~~L~~~F~~kGL~~~DlVaLsGF~~pD~L~SDq~L~~D~~t~~~V~~yA  115 (163)
                      |.+++|++||+|++++.++++||+ |+ .++++|++.|+++||+++|||+||||.+|+.|+||++|++||+++.+|+.||
T Consensus       142 w~~~~v~~GR~D~~~~~~~g~LP~-p~~~~~~~l~~~F~~~Gl~~~dlVaLsGf~gp~~l~sD~~L~~Dp~~~~~V~~YA  220 (268)
T 3rrw_A          142 WGLFDRNFGRSDATEADPEGRVPQ-WGKATVQEMKDKFIAVGLGPRQLAVMSAFLGPDQAATEQLLATDPQVAPWVQKYQ  220 (268)
T ss_dssp             GHHHHHCCCCCCCSSCCCSSCSCC-GGGCCHHHHHHHHHHTTCCHHHHHHTGGGGCSCHHHHHHHHTTSTTTHHHHHHHH
T ss_pred             cccCcCcCCCcCCCccCcccCCCC-CCcCCHHHHHHHHHHcCCChhhceeeeccCCCCccHHHHHHHcChhHHHHHHHHh
Confidence            644466999999999999899999 98 6999999999999999999999999988888999999999999999999999


Q ss_pred             hcCCCCChHHHHHHHHHHHHHHhcCCCCCCCCCccCCccccccccccC
Q 031227          116 RSRETVSQTDYEVDLITTFTKLSSLGQQINYEAYTYPAQKIELSKLKL  163 (163)
Q Consensus       116 ~~~~~~~~~~Ff~dFa~AmvKMg~lgv~~~~~~y~~~~~~~~~~~~~~  163 (163)
                      +|++||+|+.||.||++||+||++||++||+|+|+||++|||++||||
T Consensus       221 ~d~~t~~q~~Ff~DFa~a~~KL~~lG~~~~~~~y~~~~~~~~~~~~~~  268 (268)
T 3rrw_A          221 RSRETVSQTDYEVDLITAFTKLSCLGQQINFEAYTYPVERINLSKLKL  268 (268)
T ss_dssp             HHHHSSSCHHHHHHHHHHHHHHHTTTCCCCTTTTCCCC----------
T ss_pred             cCcccccHHHHHHHHHHHHHHHHHcCCCCCHHHhcCCcccccchhcCC
Confidence            998888899999999999999999999999999999999999999997

PyMOL of 3rrw

>3hdl_A Royal PALM TREE peroxidase; glycosylated, oxidoreductase; HET: HEM MES NAG FUC MAN; 1.85A {Roystonea regia} SCOP: a.93.1.0	Back alignment and structure

>1sch_A PNP, peanut peroxidase, major cationic isozyme; calcium binding, glycosylation, oxidoreductase; HET: NAG HEM; 2.56A {Arachis hypogaea} SCOP: a.93.1.1	Back alignment and structure

>1fhf_A SEED coat peroxidase; oxidoreductase; HET: HEM; 2.80A {Glycine max} SCOP: a.93.1.1	Back alignment and structure

>1pa2_A Peroxidase, ATP A2; oxidoreductase; HET: HEM; 1.45A {Arabidopsis thaliana} SCOP: a.93.1.1 PDB: 1qo4_A*	Back alignment and structure

>1gwu_A Peroxidase C1A; oxidoreductase, glycoprotein, heme, multigene family, signal,; HET: HEM; 1.31A {Armoracia rusticana} SCOP: a.93.1.1 PDB: 1w4w_A* 1w4y_A* 1gwo_A* 2atj_A* 1gwt_A* 3atj_A* 1gx2_A* 7atj_A* 1h55_A* 1h58_A* 1h5a_A* 1h5c_A* 1h5d_A* 1h5e_A* 1h5f_A* 1h57_A* 1h5h_A* 1h5i_A* 1h5j_A* 1h5k_A* ...	Back alignment and structure

>1qgj_A Peroxidase N; oxidoreductase; HET: HEM GSH; 1.90A {Arabidopsis thaliana} SCOP: a.93.1.1	Back alignment and structure

>1bgp_A Barley grain peroxidase; chromoprotein, oxidoreductase; HET: HEM; 1.90A {Hordeum vulgare} SCOP: a.93.1.1	Back alignment and structure

>2vcn_A Ascorbate peroxidase; INH, APX, isoniazid, oxidoreductase; HET: HEM ISZ; 1.20A {Glycine max} PDB: 2ggn_X* 2ghd_X* 2ghe_X* 2ghc_X* 2vnx_X* 2vnz_X* 2vo2_X* 2wd4_A* 1oaf_A* 1oag_A* 1v0h_X* 2ghh_X* 2ghk_X* 2vcf_X* 2cl4_X* 2vcs_A* 2xi6_A* 2xif_A* 2xih_A* 2xj6_A* ...	Back alignment and structure

>3riv_A Ascorbate peroxidase; alpha helical bundle, heme peroxidase, oxidoreductase; HET: HEM; 1.76A {Leishmania major} PDB: 3riw_A* 4ged_A*	Back alignment and structure

>1iyn_A Chloroplastic ascorbate peroxidase; hydrogen peroxide, tobacco plant, stromal ascorbate peroxidase, oxidoreductase; HET: HEM; 1.60A {Nicotiana tabacum} SCOP: a.93.1.1	Back alignment and structure

>3e2o_A CCP, cytochrome C peroxidase; cytochrome C peroxidase (CCP), heme, hydrogen peroxide, iron, metal-binding, mitochondrion; HET: HEM; 1.06A {Saccharomyces cerevisiae} SCOP: a.93.1.1 PDB: 4a71_A* 1z53_A* 1kok_A* 1sbm_A* 1sdq_A* 1s73_A* 1zby_A* 1zbz_A* 2b0z_A* 2b10_A* 2b11_A* 2b12_A* 2cyp_A* 2ycg_A* 4a6z_A* 2v23_A* 1ebe_A* 3r98_A* 3r99_A* 1mkr_A* ...	Back alignment and structure

>3m5q_A Manganese peroxidase 1; heme, Mn(II)-binding site, Ca(II)-binding site, glycosylation, ultrahigh resolution, calcium; HET: NAG MAN HEM; 0.93A {Phanerochaete chrysosporium} SCOP: a.93.1.1 PDB: 1mnp_A* 1yyg_A* 1yzp_A* 1yzr_A* 1yyd_A* 3m8m_A* 1mn1_A* 1mn2_A*	Back alignment and structure

>3fmu_A VersatIle peroxidase VPL2; class II (fungal) peroxidases, protoporphyrin IX, electron T lignin peroxidase, lignin degradation; HET: HEM; 1.04A {Pleurotus eryngii} PDB: 3fjw_A* 2boq_A* 3fm1_A* 3fm4_A* 3fm6_A* 3fkg_A* 2w23_A* 2vka_A* 4fcn_A* 4g05_A* 4fcs_A* 4fef_A* 4fdq_A*	Back alignment and structure

>3q3u_A Lignin peroxidase; oxidoreductase; HET: HEM; 1.85A {Trametes cervina} SCOP: a.93.1.0	Back alignment and structure

>2e39_A Peroxidase; heme protein, coordination geometry of heme iron, ARP, perox oxidoreductase; HET: NAG MAN HEM; 1.30A {'arthromyces ramosus'} SCOP: a.93.1.1 PDB: 1arp_A* 1arv_A* 1arw_A* 1arx_A* 1ary_A* 1c8i_A* 1ck6_A* 1gza_A* 1gzb_A* 1hsr_A* 1aru_A* 2e3a_A* 2e3b_A* 1lyk_A* 1lyc_A* 1ly9_A* 1h3j_A* 1ly8_A*	Back alignment and structure

>1llp_A LIP4.15, lignin peroxidase; heme protein, glyco protein,, oxidoreductase; HET: NAG MAN A2G HEM; 1.70A {Phanerochaete chrysosporium} SCOP: a.93.1.1 PDB: 1lga_A* 1b80_A* 1b82_A* 1b85_A* 1qpa_A*	Back alignment and structure

>1u2k_A Peroxidase/catalase HPI; KATG, catalase-peroxidase, C-terminal domain, oxidoreductase; 2.00A {Escherichia coli} SCOP: a.93.1.3 PDB: 1u2l_A 1u2j_A	Back alignment and structure

>2cca_A Peroxidase/catalase T; oxidoreductase, catalase-peroxidase, KATG, heme, hydrogen peroxide, iron, metal-binding, organic radical; HET: HEM; 2.0A {Mycobacterium tuberculosis} SCOP: a.93.1.3 a.93.1.3 PDB: 1sj2_A* 2ccd_A*	Back alignment and structure

>1itk_A Catalase-peroxidase; heme protein, oxidoreductase; HET: HEM; 2.00A {Haloarcula marismortui} SCOP: a.93.1.3 a.93.1.3	Back alignment and structure

>1ub2_A Catalase-peroxidase; KATG, cyanobacteria, oxidoreductase; HET: HEM; 2.40A {Synechococcus elongatus} SCOP: a.93.1.3 a.93.1.3	Back alignment and structure

>1itk_A Catalase-peroxidase; heme protein, oxidoreductase; HET: HEM; 2.00A {Haloarcula marismortui} SCOP: a.93.1.3 a.93.1.3	Back alignment and structure

>3vli_A Catalase-peroxidase 2; oxidoreductase; HET: HEM; 1.70A {Haloarcula marismortui} PDB: 3vlh_A* 3vlj_A* 3vlk_A* 3vll_A* 3uw8_A* 3vlm_A* 1itk_A*	Back alignment and structure

>3vli_A Catalase-peroxidase 2; oxidoreductase; HET: HEM; 1.70A {Haloarcula marismortui} PDB: 3vlh_A* 3vlj_A* 3vlk_A* 3vll_A* 3uw8_A* 3vlm_A* 1itk_A*	Back alignment and structure

>3ut2_A Catalase-peroxidase 2; KATG, fungal, heme enzyme, oxidoreducta; HET: TOX HEM; 1.55A {Magnaporthe oryzae 70-15}	Back alignment and structure

>3n3r_A Catalase-peroxidase; E198A variant, tuberclosis, isonicotini hydrazide binding, oxidoreductase; HET: TOX HEM; 1.60A {Burkholderia pseudomallei} PDB: 3n3s_A* 3n3o_A* 2fxj_A* 3n3p_A* 2fxg_A* 3n3n_A* 2fxh_A* 2dv2_A* 3n3q_A* 2dv1_A* 1x7u_A* 1mwv_A* 2b2o_A* 2b2q_A* 2b2r_A* 2b2s_A*	Back alignment and structure

>3n3r_A Catalase-peroxidase; E198A variant, tuberclosis, isonicotini hydrazide binding, oxidoreductase; HET: TOX HEM; 1.60A {Burkholderia pseudomallei} PDB: 3n3s_A* 3n3o_A* 2fxj_A* 3n3p_A* 2fxg_A* 3n3n_A* 2fxh_A* 2dv2_A* 3n3q_A* 2dv1_A* 1x7u_A* 1mwv_A* 2b2o_A* 2b2q_A* 2b2r_A* 2b2s_A*	Back alignment and structure

>2cca_A Peroxidase/catalase T; oxidoreductase, catalase-peroxidase, KATG, heme, hydrogen peroxide, iron, metal-binding, organic radical; HET: HEM; 2.0A {Mycobacterium tuberculosis} SCOP: a.93.1.3 a.93.1.3 PDB: 1sj2_A* 2ccd_A*	Back alignment and structure

>1ub2_A Catalase-peroxidase; KATG, cyanobacteria, oxidoreductase; HET: HEM; 2.40A {Synechococcus elongatus} SCOP: a.93.1.3 a.93.1.3	Back alignment and structure

>3ut2_A Catalase-peroxidase 2; KATG, fungal, heme enzyme, oxidoreducta; HET: TOX HEM; 1.55A {Magnaporthe oryzae 70-15}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		163
d1fhfa_		304	Plant peroxidase {Soybean (Glycine max) [TaxId: 38	99.97
d1bgpa_		309	Plant peroxidase {Barley (Hordeum vulgare), peroxi	99.97
d1pa2a_		306	Plant peroxidase {Mouse-ear cress (Arabidopsis tha	99.97
d1scha_		294	Plant peroxidase {Peanut (Arachis hypogaea) [TaxId	99.97
d1qgja_		300	Plant peroxidase {Mouse-ear cress (Arabidopsis tha	99.96
d1yyda1		357	Fungal peroxidase (ligninase) {Basidomycetos fungu	99.96
d2euta1		291	Cytochrome c peroxidase, CCP {Baker's yeast (Sacch	99.95
d2e39a1		336	Fungal peroxidase (ligninase) {Arthromyces ramosus	99.95
d1gwua_		307	Plant peroxidase {Horseradish (Armoracia rusticana	99.95
d1oafa_		250	Ascorbate peroxidase {Soybean (Glycine max) [TaxId	99.95
d1iyna_		275	Ascorbate peroxidase {Common tobacco (Nicotiana ta	99.95
d1llpa_		343	Fungal peroxidase (ligninase) {White rot basidiomy	99.94
d1mwva2		308	Catalase-peroxidase KatG {Burkholderia pseudomalle	99.53
d1ub2a2		294	Catalase-peroxidase KatG {Synechococcus sp. pcc 79	99.45
d1itka1		406	Catalase-peroxidase KatG {Archaeon Haloarcula mari	99.41
d1u2ka_		292	Catalase-peroxidase KatG {Burkholderia pseudomalle	99.38
d1itka2		308	Catalase-peroxidase KatG {Archaeon Haloarcula mari	99.35
d1mwva1		406	Catalase-peroxidase KatG {Burkholderia pseudomalle	99.25
d2ccaa1		410	Catalase-peroxidase KatG {Mycobacterium tuberculos	99.2
d1ub2a1		406	Catalase-peroxidase KatG {Synechococcus sp. pcc 79	99.2
d2ccaa2		285	Catalase-peroxidase KatG {Mycobacterium tuberculos	98.84

>d1fhfa_ a.93.1.1 (A:) Plant peroxidase {Soybean (Glycine max) [TaxId: 3847]}	Back information, alignment and structure

class: All alpha proteins
fold: Heme-dependent peroxidases
superfamily: Heme-dependent peroxidases
family: CCP-like
domain: Plant peroxidase
species: Soybean (Glycine max) [TaxId: 3847]

Probab=99.97  E-value=1.1e-32  Score=233.49  Aligned_cols=127  Identities=17%  Similarity=0.325  Sum_probs=107.7

Q ss_pred             HHHHHhh-CCCCcccceeeec--------cCCcccccccccCCCCCCCCCCC---CCCCCCCcccCHHHHHHHHHhCCCC
Q 031227           12 WHQPSAN-VEGMKRKGAYCTL--------HMAQMWGLFEKQFGRTDAQEPDP---EGRVPQWEKATVQEMKDKFSAIGLG   79 (163)
Q Consensus        12 ~~~~~~~-c~g~vsca~~la~--------g~~~~w~v~~v~~GRrDg~~s~~---~~~LP~~p~~~~~~L~~~F~~kGL~   79 (163)
                      ||+++|. ||++||||++++.        ..||.|+|   ++||+|+++|++   .++||. |+.++++|++.|+++|||
T Consensus        83 iK~~le~~cp~~VScADIlalAardAv~~~GGP~~~v---~~GR~D~~~s~~~~~~~~lP~-p~~~~~~l~~~F~~~Gl~  158 (304)
T d1fhfa_          83 IKTAVENSCPDTVSCADILAIAAEIASVLGGGPGWPV---PLGRRDSLTANRTLANQNLPA-PFFNLTQLKASFAVQGLN  158 (304)
T ss_dssp             HHHHHHTTSTTTSCHHHHHHHHHHHHHHTTTCCCCCC---CBCCCBCSCCCHHHHHHHSCC-TTCCHHHHHHHHHHTTCC
T ss_pred             HHHHHHhhCCCccCHHHHHHHHHhhhhhhcCCCcccc---cCCCcCcCccccccccccCCC-CCCCHHHHHHHHHHcCCC
Confidence            4666666 9999999966653        23445666   999999999974   367999 999999999999999999


Q ss_pred             hhcceeeec-----------CC-------------------------------------------CC---C---------
Q 031227           80 PRQLAVMSA-----------FL-------------------------------------------GP---D---------   93 (163)
Q Consensus        80 ~~DlVaLsG-----------F~-------------------------------------------~p---D---------   93 (163)
                      .+|||||||           |.                                           .|   |         
T Consensus       159 ~~d~VaLsGaHTiG~ahc~~~~~rl~~~~~~~~~d~~~~~~~~~~L~~~c~~~~~~~~~~~~d~~tp~~fDn~Yy~~l~~  238 (304)
T d1fhfa_         159 TLDLVTLSGGHTFGRARCSTFINRLYNFSNTGNPDPTLNTTYLEVLRARCPQNATGDNLTNLDLSTPDQFDNRYYSNLLQ  238 (304)
T ss_dssp             HHHHHHHGGGGGSCEEEGGGTGGGTSCGGGSSSCCTTSCHHHHHHHHHHSCSSCSSCCEEESCSSSTTSCSTHHHHHHHT
T ss_pred             HHHHHHHhhhhhhcccccccccccccCCCCCCCCCcccCHHHHHHHHHhcCCCCCCCcccccCCCCCCccccHHHHHHhh
Confidence            999999999           10                                           01   1         


Q ss_pred             --C-chhHHHhccCC--CcHHHHHHHhhcCCCCChHHHHHHHHHHHHHHhcCCCCCCCC
Q 031227           94 --Q-AATEALLATDK--DVSPWVQKYQRSRETVSQTDYEVDLITTFTKLSSLGQQINYE  147 (163)
Q Consensus        94 --~-L~SDq~L~~D~--~t~~~V~~yA~~~~~~~~~~Ff~dFa~AmvKMg~lgv~~~~~  147 (163)
                        + |+|||+|+.|+  +|+.+|+.||.|+     +.|+.+|++||+|||+|||+.+.+
T Consensus       239 ~~glL~SD~~L~~dp~~~t~~~V~~yA~d~-----~~F~~~F~~Am~Km~~lgv~tg~~  292 (304)
T d1fhfa_         239 LNGLLQSDQELFSTPGADTIPIVNSFSSNQ-----NTFFSNFRVSMIKMGNIGVLTGDE  292 (304)
T ss_dssp             TCCSSHHHHTTTSSTTCSSHHHHHHHHHCH-----HHHHHHHHHHHHHHTTTTCCCTTS
T ss_pred             cCcccHhhHHHHhCCCchHHHHHHHHhhCH-----HHHHHHHHHHHHHHhcCCCCCCCC
Confidence              3 89999999996  6999999999999     999999999999999999988754

PyMOL of d1fhfa_

>d1bgpa_ a.93.1.1 (A:) Plant peroxidase {Barley (Hordeum vulgare), peroxidase 1 [TaxId: 4513]}	Back information, alignment and structure

>d1pa2a_ a.93.1.1 (A:) Plant peroxidase {Mouse-ear cress (Arabidopsis thaliana), peroxidase A2 [TaxId: 3702]}	Back information, alignment and structure

>d1scha_ a.93.1.1 (A:) Plant peroxidase {Peanut (Arachis hypogaea) [TaxId: 3818]}	Back information, alignment and structure

>d1qgja_ a.93.1.1 (A:) Plant peroxidase {Mouse-ear cress (Arabidopsis thaliana), peroxidase N [TaxId: 3702]}	Back information, alignment and structure

>d1yyda1 a.93.1.1 (A:1-357) Fungal peroxidase (ligninase) {Basidomycetos fungus (Phanerochaete chrysosporium) [TaxId: 5306]}	Back information, alignment and structure

>d2euta1 a.93.1.1 (A:4-294) Cytochrome c peroxidase, CCP {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d2e39a1 a.93.1.1 (A:9-344) Fungal peroxidase (ligninase) {Arthromyces ramosus [TaxId: 5451]}	Back information, alignment and structure

>d1gwua_ a.93.1.1 (A:) Plant peroxidase {Horseradish (Armoracia rusticana) [TaxId: 3704]}	Back information, alignment and structure

>d1oafa_ a.93.1.1 (A:) Ascorbate peroxidase {Soybean (Glycine max) [TaxId: 3847]}	Back information, alignment and structure

>d1iyna_ a.93.1.1 (A:) Ascorbate peroxidase {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}	Back information, alignment and structure

>d1llpa_ a.93.1.1 (A:) Fungal peroxidase (ligninase) {White rot basidiomycete (Phanerochaete chrysosporium) [TaxId: 5306]}	Back information, alignment and structure

>d1mwva2 a.93.1.3 (A:441-748) Catalase-peroxidase KatG {Burkholderia pseudomallei [TaxId: 28450]}	Back information, alignment and structure

>d1ub2a2 a.93.1.3 (A:427-720) Catalase-peroxidase KatG {Synechococcus sp. pcc 7942 [TaxId: 1140]}	Back information, alignment and structure

>d1itka1 a.93.1.3 (A:18-423) Catalase-peroxidase KatG {Archaeon Haloarcula marismortui [TaxId: 2238]}	Back information, alignment and structure

>d1u2ka_ a.93.1.3 (A:) Catalase-peroxidase KatG {Burkholderia pseudomallei [TaxId: 28450]}	Back information, alignment and structure

>d1itka2 a.93.1.3 (A:424-731) Catalase-peroxidase KatG {Archaeon Haloarcula marismortui [TaxId: 2238]}	Back information, alignment and structure

>d1mwva1 a.93.1.3 (A:35-440) Catalase-peroxidase KatG {Burkholderia pseudomallei [TaxId: 28450]}	Back information, alignment and structure

>d2ccaa1 a.93.1.3 (A:26-435) Catalase-peroxidase KatG {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d1ub2a1 a.93.1.3 (A:21-426) Catalase-peroxidase KatG {Synechococcus sp. pcc 7942 [TaxId: 1140]}	Back information, alignment and structure

>d2ccaa2 a.93.1.3 (A:436-720) Catalase-peroxidase KatG {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure