Citrus Sinensis ID: 031268

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160--
Protein Sequence
MIMASLQARKGRLRQRYEDQLRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWVSNNHFLWRKHSNLVGMIG
Secondary Structure (PSIPRED)
cccccccccccccccccccccEEEEEEEEEccccccccccccccccEEEEEEEccccccEEEccccccccccHHHHHHHHHHHHHcEEEEEcccccEEEEEEEcccccccccccccEEEEEEcEEEHHHHcccccccccEEEEEEHHHHHHHcccHHHHHcc
Secondary Structure Prediction (SSPRO)
ccEEEEEEcccccccEcccccEEEEEEEEEEEEccccccccccccEEEEEEEEccccccEEEccccccccccHHHHHHHHHHHHcccEEEEEcccccEEEEccccccccccccccccEEEEEEEEEHHHHHcccHHcccccEEEEHHHHHHHHccccEEccc
Coil and Loop (DISEMBL)
MIMASLQARKGRLRQRYEDQLRLVAgcipykfekndenknckmEKKVLVLMIStpnrddlvfpkggweddetVSEAACREALEEAGvrglldenplgewefrsksrmnscnskeggcrGYMFALEVTEEleswpeqanykriwvSNNHFLWRKHsnlvgmig
Flexible Loop (DISEMBL)
mimaslqaRKGRLRQRYEDQLRLVAGCipykfekndenknckMEKKVLVLMIStpnrddlvfpkgGWEDDETVSEAACREALEeagvrglldenplgewefrsksrmnscnskegGCRGYMFALEVTEELESWPEQANYKRIWVSNNHflwrkhsnlvgmig
Low Complexity Region (SEG)
MIMASLQARKGRLRQRYEDQLRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWVSNNHFLWRKHSNLVGMIG
Disordered region (IsUnstruct)
****************YEDQLRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWE**************GGCRGYMFALEVTEELESWPEQANYKRIWVSNNHFLWRKHSNLV****
Disordered Region (DISOPRED)
****************YEDQLRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWVSNNHFLWRKHSNLVGMIG
Disordered Region (DISEMBL)
MIMASLQARKGRLRQRYEDQLRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWVSNNHFLWRKHSNLVGMIG
Disordered Region (DISPRO)
*IMASLQARKGRLRQRYEDQLRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRM*SCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWVSNNHFLWRKHSNLVGMIG
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIMASLQARKGRLRQRYEDQLRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWVSNNHFLWRKHSNLVGMIG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	162	2.2.26 [Sep-21-2011]
Q52K88	202	Nudix hydrolase 13, mitoc	yes	no	0.882	0.707	0.602	2e-43
Q93ZY7	203	Nudix hydrolase 12, mitoc	no	no	0.895	0.714	0.588	3e-43
Q9LHK1	180	Nudix hydrolase 16, mitoc	no	no	0.870	0.783	0.538	7e-29
Q9ZU95	182	Nudix hydrolase 17, mitoc	no	no	0.814	0.725	0.475	4e-26
Q9LE73	207	Nudix hydrolase 4 OS=Arab	no	no	0.814	0.637	0.448	2e-24
Q9LQU5	176	Nudix hydrolase 18, mitoc	no	no	0.808	0.744	0.464	6e-24
Q8VY81	198	Nudix hydrolase 21, chlor	no	no	0.790	0.646	0.4	8e-21
Q5RAF0	180	Diphosphoinositol polypho	yes	no	0.586	0.527	0.324	8e-06
Q9NZJ9	180	Diphosphoinositol polypho	no	no	0.586	0.527	0.324	8e-06
Q09790	210	Diphosphoinositol polypho	yes	no	0.456	0.352	0.379	9e-06

>sp|Q52K88|NUD13_ARATH Nudix hydrolase 13, mitochondrial OS=Arabidopsis thaliana GN=NUDT13 PE=1 SV=1

 Score =  174 bits (441), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 88/146 (60%), Positives = 110/146 (75%), Gaps = 3/146 (2%)

Query: 3   MASLQARKGRLRQRYEDQLRLVAGCIPYKFEKNDE--NKNCKMEKKVLVLMISTPNRDDL 60
           M++L AR GR  QRY++  RLV+GCIPY+  K++E  + +   E K+ VLMIS+PNR DL
Sbjct: 1   MSNLSARTGRDHQRYDNNFRLVSGCIPYRLVKDEEEDSTSVDFENKLQVLMISSPNRHDL 60

Query: 61  VFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCN-SKEGGCRG 119
           VFPKGGWEDDETV EAA REA+EEAGV+G+L E+PLG WEFRSKS     +    GGC+G
Sbjct: 61  VFPKGGWEDDETVLEAASREAMEEAGVKGILREDPLGVWEFRSKSSSVEADCCLGGGCKG 120

Query: 120 YMFALEVTEELESWPEQANYKRIWVS 145
           YMFALEV EEL  WPEQ + +R W++
Sbjct: 121 YMFALEVKEELAIWPEQDDRERRWLN 146

Mediates the hydrolysis of some nucleoside diphosphate derivatives. Can use diadenosine 5',5'''-P(1)P(6) hexaphosphate (Ap(6)A), diadenosine 5',5'''-P(1)P(5) pentaphosphate (Ap(5)A) and adenosine tetraphosphate (p(4)A) as substrates, but not diadenosine 5',5'''-P(1)P(4) tetraphosphate (Ap(4)A), diadenosine 5',5'''-P(1)P(3) triphosphate (Ap(3)A), deoxyribonucleoside triphosphates, ribonucleoside triphosphates, diphosphoinositol pentakisphosphate (PP-InsP(5)) and 5-phospho-alpha-D-ribosyl diphosphate (PRPP).
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 6EC: .EC: 1EC: .EC: -

>sp|Q93ZY7|NUD12_ARATH Nudix hydrolase 12, mitochondrial OS=Arabidopsis thaliana GN=NUDT12 PE=2 SV=1

 Score =  173 bits (439), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 90/153 (58%), Positives = 110/153 (71%), Gaps = 8/153 (5%)

Query: 3   MASLQARKGRLRQRYEDQLRLVAGCIPYKFEKNDE---NKNCKMEKKVLVLMISTPNRDD 59
           M+ L +R GR RQRY++  RLV+GCIPY+  K DE   +       K+ VLM+S+PNR D
Sbjct: 1   MSVLSSRTGRDRQRYDNNFRLVSGCIPYRLMKADETEEDSGVDFVNKLEVLMVSSPNRHD 60

Query: 60  LVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRM--NSCNSKEGGC 117
           LVFPKGGWEDDETV EAA REA+EEAGV+G+L E PLG WEFRSKS    + C    GGC
Sbjct: 61  LVFPKGGWEDDETVLEAASREAIEEAGVKGILRELPLGVWEFRSKSSTVEDECL---GGC 117

Query: 118 RGYMFALEVTEELESWPEQANYKRIWVSNNHFL 150
           +GYMFAL+VTEELE WPE+ N +R W++    L
Sbjct: 118 KGYMFALKVTEELEDWPERKNRERRWLTVKEAL 150

Probably mediates the hydrolysis of some nucleoside diphosphate derivatives.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q9LHK1|NUD16_ARATH Nudix hydrolase 16, mitochondrial OS=Arabidopsis thaliana GN=NUDT16 PE=2 SV=1

 Score =  126 bits (316), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 77/143 (53%), Positives = 101/143 (70%), Gaps = 2/143 (1%)

Query: 3   MASLQARKGRLRQRYEDQLRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDLVF 62
           M  L AR GRL+QRYED  RLVAGCIP+++  +D++ N +  K + VLMIS+ +   L+F
Sbjct: 1   MCDLVARTGRLQQRYEDGSRLVAGCIPFRYVNSDKDGNSESGKVIQVLMISSSSGPGLLF 60

Query: 63  PKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMF 122
           PKGGWE+DETV EAA REA+EEAGVRG+L  + LG +EF+SKS  +   S EG C+  M+
Sbjct: 61  PKGGWENDETVREAAAREAVEEAGVRGIL-MDFLGNYEFKSKSHQDEF-SPEGLCKAAMY 118

Query: 123 ALEVTEELESWPEQANYKRIWVS 145
           AL V EEL +WPE     R W++
Sbjct: 119 ALYVKEELATWPEHETRTRKWLT 141

Probably mediates the hydrolysis of some nucleoside diphosphate derivatives.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q9ZU95|NUD17_ARATH Nudix hydrolase 17, mitochondrial OS=Arabidopsis thaliana GN=NUDT17 PE=2 SV=1

 Score =  117 bits (292), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 68/143 (47%), Positives = 90/143 (62%), Gaps = 11/143 (7%)

Query: 3   MASLQARKGRLRQRYEDQLRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDLVF 62
           M  L +R GR  QRY    R V GC+PY+F+ +++ K   +  +V VL+IS+     L+F
Sbjct: 6   MVCLASRTGRQFQRYNKGRRQVVGCVPYRFKLSNDGK---ISDEVEVLVISSQKGHALMF 62

Query: 63  PKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMF 122
           PKGGWE DE+V EAA RE LEEAGV G + E+ LG+W+F SKSR            G MF
Sbjct: 63  PKGGWELDESVEEAASRECLEEAGVLGNV-EHQLGKWDFLSKSRGTYYE-------GLMF 114

Query: 123 ALEVTEELESWPEQANYKRIWVS 145
            + VTE+LE WPEQ   +RIW++
Sbjct: 115 PMLVTEQLELWPEQHVRQRIWMN 137

Probably mediates the hydrolysis of some nucleoside diphosphate derivatives.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q9LE73|NUDT4_ARATH Nudix hydrolase 4 OS=Arabidopsis thaliana GN=NUDT4 PE=1 SV=1

 Score =  111 bits (278), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 65/145 (44%), Positives = 93/145 (64%), Gaps = 13/145 (8%)

Query: 3   MASLQARKGRLRQRYEDQ-LRLVAGCIPYKFEKNDENKNCKMEKKVL-VLMISTPNRDDL 60
           + SL +R GR  QRY+    R V GC+PY+++K + N    +E +V+ VL++S      +
Sbjct: 40  VVSLVSRTGRDLQRYDHAGYRQVVGCVPYRYKKQEVNG---VETQVIQVLLVSAQKGKGM 96

Query: 61  VFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGY 120
           +FPKGGWE DE++ EAA RE +EEAGV G L+E  LG+W+++SK R +  +       GY
Sbjct: 97  LFPKGGWETDESMEEAALRETIEEAGVTGELEEK-LGKWQYKSK-RHSIIHD------GY 148

Query: 121 MFALEVTEELESWPEQANYKRIWVS 145
           MFAL V++E E WPE    +R WVS
Sbjct: 149 MFALLVSQEFERWPEAEMRQRRWVS 173

Probably mediates the hydrolysis of some nucleoside diphosphate derivatives. In vitro, it can use both NADH and ADP-ribose as substrates; however the relevance of such substrates in vivo is unclear.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 2

EC: 2

>sp|Q9LQU5|NUD18_ARATH Nudix hydrolase 18, mitochondrial OS=Arabidopsis thaliana GN=NUDT18 PE=2 SV=1

 Score =  109 bits (273), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 66/142 (46%), Positives = 85/142 (59%), Gaps = 11/142 (7%)

Query: 3   MASLQARKGRLRQRYEDQLRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDLVF 62
           M  L +R GR  QRY    R V GCIPY+ + + +     +  +  VL+IS+     L+F
Sbjct: 1   MVCLVSRTGRQSQRYNKGRRQVVGCIPYRLKISSDGT---ISDEFEVLVISSQKGHALMF 57

Query: 63  PKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMF 122
           PKGGWE DE+V EAA RE+LEEAGV G + E  LG+W+F SK       SK     G+MF
Sbjct: 58  PKGGWELDESVEEAASRESLEEAGVVGNV-ERQLGKWDFLSK-------SKGTFYEGFMF 109

Query: 123 ALEVTEELESWPEQANYKRIWV 144
            + V EELE WPEQ   +RIW+
Sbjct: 110 PMLVKEELELWPEQHLRQRIWM 131

Probably mediates the hydrolysis of some nucleoside diphosphate derivatives.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q8VY81|NUD21_ARATH Nudix hydrolase 21, chloroplastic OS=Arabidopsis thaliana GN=NUDT21 PE=2 SV=1

 Score = 99.4 bits (246), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 58/145 (40%), Positives = 86/145 (59%), Gaps = 17/145 (11%)

Query: 3   MASLQARKGRLRQRYEDQ-LRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDD-L 60
           + SL +R GR  QRY     R V GC+PY+++K+   +       + VL+IS   +   +
Sbjct: 41  VVSLVSRTGRDLQRYNTAGYRQVVGCVPYRYKKHGGGE-------IEVLLISAQKKGKGM 93

Query: 61  VFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGY 120
           + PKGGWE DE++ EAA RE +EEAGV G L+E+ LG+W+++SK      +       G+
Sbjct: 94  LLPKGGWEIDESIEEAALRETIEEAGVTGQLEES-LGKWQYKSKRHTMIHD-------GH 145

Query: 121 MFALEVTEELESWPEQANYKRIWVS 145
           MF L V+++ E WPE    +R WVS
Sbjct: 146 MFPLLVSQQFEIWPESEFRQRKWVS 170

Probably mediates the hydrolysis of some nucleoside diphosphate derivatives.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q5RAF0|NUDT4_PONAB Diphosphoinositol polyphosphate phosphohydrolase 2 OS=Pongo abelii GN=NUDT4 PE=2 SV=1

 Score = 49.7 bits (117), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 55/117 (47%), Gaps = 22/117 (18%)

Query: 25  AGCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEE 84
           A C+ ++ E+ DE          ++L+ S+   D  + P GG E +E    AA RE  EE
Sbjct: 21  AACLCFRSEQEDE----------VLLVSSSRYPDQWIVPGGGMEPEEEPGGAAVREVYEE 70

Query: 85  AGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKR 141
           AGV+G L    LG +E + +             R Y++ L VTE LE W +  N  R
Sbjct: 71  AGVKGKLGRL-LGIFENQDRKH-----------RTYVYVLTVTEILEDWEDSVNIGR 115

Cleaves a beta-phosphate from the diphosphate groups in PP-InsP5 (diphosphoinositol pentakisphosphate), PP-InsP4 and [PP]2-InsP4 (bisdiphosphoinositol tetrakisphosphate), suggesting that it may play a role in signal transduction. Also able to catalyze the hydrolysis of dinucleoside oligophosphate Ap6A, but not Ap5A. The major reaction products are ADP and p4a from Ap6A. Also able to hydrolyze 5-phosphoribose 1-diphosphate.

Pongo abelii (taxid: 9601)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q9NZJ9|NUDT4_HUMAN Diphosphoinositol polyphosphate phosphohydrolase 2 OS=Homo sapiens GN=NUDT4 PE=1 SV=2

 Score = 49.7 bits (117), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 55/117 (47%), Gaps = 22/117 (18%)

Query: 25  AGCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEE 84
           A C+ ++ E+ DE          ++L+ S+   D  + P GG E +E    AA RE  EE
Sbjct: 21  AACLCFRSEQEDE----------VLLVSSSRYPDQWIVPGGGMEPEEEPGGAAVREVYEE 70

Query: 85  AGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKR 141
           AGV+G L    LG +E + +             R Y++ L VTE LE W +  N  R
Sbjct: 71  AGVKGKLGRL-LGIFENQDRKH-----------RTYVYVLTVTEILEDWEDSVNIGR 115

Cleaves a beta-phosphate from the diphosphate groups in PP-InsP5 (diphosphoinositol pentakisphosphate), PP-InsP4 and [PP]2-InsP4 (bisdiphosphoinositol tetrakisphosphate), suggesting that it may play a role in signal transduction. Also able to catalyze the hydrolysis of dinucleoside oligophosphate Ap6A, but not Ap5A. The major reaction products are ADP and p4a from Ap6A. Also able to hydrolyze 5-phosphoribose 1-diphosphate.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q09790|APS1_SCHPO Diphosphoinositol polyphosphate phosphohydrolase aps1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=aps1 PE=1 SV=1

 Score = 49.7 bits (117), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 45/87 (51%), Gaps = 13/87 (14%)

Query: 5  SLQARKGRLRQRYE--DQLRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDLVF 62
          S+ +R+GR + R+      RL AG +    +K          +KVL L+ S       V 
Sbjct: 23 SMTSREGRTKNRFNPITGARLAAGVVALSADK----------RKVL-LVSSAKKHPSWVV 71

Query: 63 PKGGWEDDETVSEAACREALEEAGVRG 89
          PKGGWE DE+V +AA RE  EE G+ G
Sbjct: 72 PKGGWEADESVQQAALREGWEEGGLVG 98

Cleaves a beta-phosphate from the diphosphate groups in PP-InsP5 (diphosphoinositol pentakisphosphate) and [PP]2-InsP4 (bisdiphosphoinositol tetrakisphosphate). Also catalyzes the hydrolysis of dinucleoside oligophosphates, with Ap6A and Ap5A being the preferred substrates. The major reaction products are ADP and p4a from Ap6A and ADP and ATP from Ap5A.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 6

EC: 0

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	162
224075439	221	predicted protein [Populus trichocarpa]	0.876	0.642	0.727	6e-56
224053585	163	predicted protein [Populus trichocarpa]	0.888	0.883	0.710	2e-54
225425306	222	PREDICTED: nudix hydrolase 13, mitochond	0.882	0.644	0.722	9e-54
296085548	221	unnamed protein product [Vitis vinifera]	0.876	0.642	0.727	2e-53
296082249	215	unnamed protein product [Vitis vinifera]	0.888	0.669	0.689	3e-53
359488421	218	PREDICTED: LOW QUALITY PROTEIN: nudix hy	0.888	0.660	0.689	8e-53
255543242	213	diphosphoinositol polyphosphate phosphoh	0.870	0.661	0.746	3e-51
449517493	237	PREDICTED: nudix hydrolase 13, mitochond	0.876	0.599	0.682	1e-50
449455984	275	PREDICTED: nudix hydrolase 13, mitochond	0.876	0.516	0.682	1e-50
359806691	232	uncharacterized protein LOC100794003 [Gl	0.876	0.612	0.671	3e-50

>gi|224075439|ref|XP_002304633.1| predicted protein [Populus trichocarpa] gi|222842065|gb|EEE79612.1| predicted protein [Populus trichocarpa]

 Score =  221 bits (564), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 104/143 (72%), Positives = 121/143 (84%), Gaps = 1/143 (0%)

Query: 3   MASLQARKGRLRQRYEDQLRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDLVF 62
           M++L AR GR RQRY DQ RLVAGCIP+K EKN E++ C +E +VLVLMISTP RDDLVF
Sbjct: 1   MSALLARTGRHRQRYVDQFRLVAGCIPFKLEKNVEDQGCNVEDRVLVLMISTPKRDDLVF 60

Query: 63  PKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMF 122
           PKGGWE+DET+ EAACREA+EEAGV+G+LDENPLG WEFRSKS  NSC S  GGCRGYMF
Sbjct: 61  PKGGWENDETLDEAACREAIEEAGVKGILDENPLGVWEFRSKSSQNSC-SLAGGCRGYMF 119

Query: 123 ALEVTEELESWPEQANYKRIWVS 145
           AL+VTEEL+ WP QA+Y R W++
Sbjct: 120 ALQVTEELDHWPGQASYNRKWLT 142

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224053585|ref|XP_002297885.1| predicted protein [Populus trichocarpa] gi|222845143|gb|EEE82690.1| predicted protein [Populus trichocarpa]

 Score =  216 bits (551), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 103/145 (71%), Positives = 120/145 (82%), Gaps = 1/145 (0%)

Query: 3   MASLQARKGRLRQRYEDQLRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDLVF 62
           M++L AR GR RQRY DQ RLVAGCIPYK +KN E++ C  E +VL+LMISTPNR DLVF
Sbjct: 1   MSTLLARTGRHRQRYVDQFRLVAGCIPYKLDKNVEDQGCNGEDRVLILMISTPNRSDLVF 60

Query: 63  PKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMF 122
           PKGGWE+DET+ EAACREA+EEAGV+G+L ENPLG WEFRSKS  NSC S  GGCRGYMF
Sbjct: 61  PKGGWENDETLGEAACREAIEEAGVKGILGENPLGVWEFRSKSSQNSC-SLAGGCRGYMF 119

Query: 123 ALEVTEELESWPEQANYKRIWVSNN 147
           AL+VTEEL+ WP QA+Y R W++ N
Sbjct: 120 ALQVTEELDQWPGQASYNRKWLTVN 144

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225425306|ref|XP_002273187.1| PREDICTED: nudix hydrolase 13, mitochondrial-like [Vitis vinifera]

 Score =  214 bits (545), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 104/144 (72%), Positives = 122/144 (84%), Gaps = 1/144 (0%)

Query: 2   IMASLQARKGRLRQRYEDQLRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDLV 61
           +M+S+QAR GR RQRY+D LRLVAGCIP+KFEK  +      E ++LVLMIS+PNR DLV
Sbjct: 1   MMSSVQARIGRERQRYKDHLRLVAGCIPFKFEKIVDGHTRNPESRLLVLMISSPNRHDLV 60

Query: 62  FPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYM 121
           FPKGGWE+DETV +AACREALEEAGVRG+L EN LGEWEFRSKS+ N+C S EGGCRGYM
Sbjct: 61  FPKGGWENDETVEQAACREALEEAGVRGILGENHLGEWEFRSKSKQNNC-SLEGGCRGYM 119

Query: 122 FALEVTEELESWPEQANYKRIWVS 145
           FAL+VTEELESWPEQA + R W++
Sbjct: 120 FALQVTEELESWPEQALHDRKWLT 143

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085548|emb|CBI29280.3| unnamed protein product [Vitis vinifera]

 Score =  213 bits (543), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 104/143 (72%), Positives = 121/143 (84%), Gaps = 1/143 (0%)

Query: 3   MASLQARKGRLRQRYEDQLRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDLVF 62
           M+S+QAR GR RQRY+D LRLVAGCIP+KFEK  +      E ++LVLMIS+PNR DLVF
Sbjct: 1   MSSVQARIGRERQRYKDHLRLVAGCIPFKFEKIVDGHTRNPESRLLVLMISSPNRHDLVF 60

Query: 63  PKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMF 122
           PKGGWE+DETV +AACREALEEAGVRG+L EN LGEWEFRSKS+ N+C S EGGCRGYMF
Sbjct: 61  PKGGWENDETVEQAACREALEEAGVRGILGENHLGEWEFRSKSKQNNC-SLEGGCRGYMF 119

Query: 123 ALEVTEELESWPEQANYKRIWVS 145
           AL+VTEELESWPEQA + R W++
Sbjct: 120 ALQVTEELESWPEQALHDRKWLT 142

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082249|emb|CBI21254.3| unnamed protein product [Vitis vinifera]

 Score =  213 bits (541), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 100/145 (68%), Positives = 122/145 (84%), Gaps = 1/145 (0%)

Query: 3   MASLQARKGRLRQRYEDQLRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDLVF 62
           M+++QAR GR RQRYE+ LRLV+GCIPY+  KN E+ +  +EK + VLMIS+PNR+DLVF
Sbjct: 1   MSTVQARTGRHRQRYENNLRLVSGCIPYRQTKNHEDHSTDLEKTIEVLMISSPNRNDLVF 60

Query: 63  PKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMF 122
           PKGGWEDDETV EAACREALEEAGV+G+L+E PLG WEFRSKSR  +C   EGGC+GYMF
Sbjct: 61  PKGGWEDDETVEEAACREALEEAGVKGILNEKPLGVWEFRSKSRQENC-CLEGGCKGYMF 119

Query: 123 ALEVTEELESWPEQANYKRIWVSNN 147
           AL+VTEELE+WPE+ N+ R W+S N
Sbjct: 120 ALKVTEELETWPEKENHDRKWLSIN 144

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488421|ref|XP_002277367.2| PREDICTED: LOW QUALITY PROTEIN: nudix hydrolase 12, mitochondrial [Vitis vinifera]

 Score =  211 bits (537), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 100/145 (68%), Positives = 122/145 (84%), Gaps = 1/145 (0%)

Query: 3   MASLQARKGRLRQRYEDQLRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDLVF 62
           M+++QAR GR RQRYE+ LRLV+GCIPY+  KN E+ +  +EK + VLMIS+PNR+DLVF
Sbjct: 1   MSTVQARTGRHRQRYENNLRLVSGCIPYRQTKNHEDHSTDLEKTIEVLMISSPNRNDLVF 60

Query: 63  PKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMF 122
           PKGGWEDDETV EAACREALEEAGV+G+L+E PLG WEFRSKSR  +C   EGGC+GYMF
Sbjct: 61  PKGGWEDDETVEEAACREALEEAGVKGILNEKPLGVWEFRSKSRQENC-CLEGGCKGYMF 119

Query: 123 ALEVTEELESWPEQANYKRIWVSNN 147
           AL+VTEELE+WPE+ N+ R W+S N
Sbjct: 120 ALKVTEELETWPEKENHDRKWLSIN 144

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255543242|ref|XP_002512684.1| diphosphoinositol polyphosphate phosphohydrolase, putative [Ricinus communis] gi|223548645|gb|EEF50136.1| diphosphoinositol polyphosphate phosphohydrolase, putative [Ricinus communis]

 Score =  206 bits (523), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 106/142 (74%), Positives = 120/142 (84%), Gaps = 1/142 (0%)

Query: 3   MASLQARKGRLRQRYEDQLRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDLVF 62
           M+SL AR GR RQRY+D LRLVAGCIPYK  KN E+++C++E K+LVLMISTPNRDDLVF
Sbjct: 1   MSSLLARTGRHRQRYQDNLRLVAGCIPYKLYKNVEDQSCRVEDKILVLMISTPNRDDLVF 60

Query: 63  PKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMF 122
           PKGGWEDDE+V EAA REA+EEAGV+GLL ENPLG WEFRSKS  NS +S  GGCRGYMF
Sbjct: 61  PKGGWEDDESVEEAASREAMEEAGVQGLLGENPLGVWEFRSKSSQNS-SSSVGGCRGYMF 119

Query: 123 ALEVTEELESWPEQANYKRIWV 144
           ALEVTEEL  WP QA+Y R W+
Sbjct: 120 ALEVTEELGHWPGQASYTRKWL 141

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449517493|ref|XP_004165780.1| PREDICTED: nudix hydrolase 13, mitochondrial-like [Cucumis sativus]

 Score =  204 bits (519), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 99/145 (68%), Positives = 116/145 (80%), Gaps = 3/145 (2%)

Query: 3   MASLQARKGRLRQRYEDQLRLVAGCIPYKFEKNDE--NKNCKMEKKVLVLMISTPNRDDL 60
           M+++ AR GR RQRY+D  RLV+GCIPY+  ++ E  N  C  E K+ VLM+S+PNRDDL
Sbjct: 1   MSAVLARTGRHRQRYDDHFRLVSGCIPYRLIEDSEEVNDQCDTENKIEVLMVSSPNRDDL 60

Query: 61  VFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGY 120
           VFPKGGWEDDET+ EAACREA+EEAGVRG L+ENPLG WEFRSKS  + C S EG CRGY
Sbjct: 61  VFPKGGWEDDETLLEAACREAVEEAGVRGKLNENPLGVWEFRSKSSQDIC-SMEGACRGY 119

Query: 121 MFALEVTEELESWPEQANYKRIWVS 145
           MFALEVTEELESWPEQ N  R W++
Sbjct: 120 MFALEVTEELESWPEQGNRHRRWLN 144

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455984|ref|XP_004145730.1| PREDICTED: nudix hydrolase 13, mitochondrial-like [Cucumis sativus]

 Score =  204 bits (519), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 99/145 (68%), Positives = 116/145 (80%), Gaps = 3/145 (2%)

Query: 3   MASLQARKGRLRQRYEDQLRLVAGCIPYKFEKNDE--NKNCKMEKKVLVLMISTPNRDDL 60
           M+++ AR GR RQRY+D  RLV+GCIPY+  ++ E  N  C  E K+ VLM+S+PNRDDL
Sbjct: 1   MSAVLARTGRHRQRYDDHFRLVSGCIPYRLIEDSEEVNDQCDTENKIEVLMVSSPNRDDL 60

Query: 61  VFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGY 120
           VFPKGGWEDDET+ EAACREA+EEAGVRG L+ENPLG WEFRSKS  + C S EG CRGY
Sbjct: 61  VFPKGGWEDDETLLEAACREAVEEAGVRGKLNENPLGVWEFRSKSSQDIC-SMEGACRGY 119

Query: 121 MFALEVTEELESWPEQANYKRIWVS 145
           MFALEVTEELESWPEQ N  R W++
Sbjct: 120 MFALEVTEELESWPEQGNRHRRWLN 144

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806691|ref|NP_001241033.1| uncharacterized protein LOC100794003 [Glycine max] gi|255642231|gb|ACU21380.1| unknown [Glycine max]

 Score =  202 bits (515), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 96/143 (67%), Positives = 119/143 (83%), Gaps = 1/143 (0%)

Query: 3   MASLQARKGRLRQRYEDQLRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDLVF 62
           M+S+ AR GR RQRYED LRLV+GCIPY++ K++ ++  +  + + VLM+S+P RDDLVF
Sbjct: 1   MSSVPARTGRQRQRYEDNLRLVSGCIPYRWTKDNTDQMGETREIIEVLMVSSPKRDDLVF 60

Query: 63  PKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMF 122
           PKGGWEDDETV+EAACREALEEAGV+G+L E PLG WEFRSK+  + C S EGGCRGYMF
Sbjct: 61  PKGGWEDDETVTEAACREALEEAGVKGILREIPLGIWEFRSKTSQDLC-SVEGGCRGYMF 119

Query: 123 ALEVTEELESWPEQANYKRIWVS 145
           ALEVTEELE+WPEQ N+ R W++
Sbjct: 120 ALEVTEELETWPEQKNHARQWLN 142

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	162
TAIR|locus:2090842	202	NUDX13 "nudix hydrolase homolo	0.882	0.707	0.602	1.9e-42
TAIR|locus:2010331	203	NUDT12 "nudix hydrolase homolo	0.876	0.699	0.602	6.6e-42
TAIR|locus:2091275	180	NUDT16 "nudix hydrolase homolo	0.870	0.783	0.538	1.3e-34
TAIR|locus:2065440	182	NUDT17 "nudix hydrolase homolo	0.814	0.725	0.475	3.2e-26
TAIR|locus:2014164	207	NUDT4 "nudix hydrolase homolog	0.814	0.637	0.448	1.8e-25
TAIR|locus:2006817	176	NUDT18 "nudix hydrolase homolo	0.808	0.744	0.464	4.2e-24
TAIR|locus:2206835	198	NUDT21 "nudix hydrolase homolo	0.790	0.646	0.406	3e-21
ASPGD|ASPL0000000420	159	ndxD [Emericella nidulans (tax	0.777	0.792	0.377	1.8e-14
UNIPROTKB|G4MKT5	168	MGG_06680 "Nudix/MutT family p	0.790	0.761	0.368	4.9e-14
POMBASE|SPAC13G6.14	210	aps1 "diadenosine 5',5'''-p1,p	0.518	0.4	0.357	4.2e-10

TAIR|locus:2090842 NUDX13 "nudix hydrolase homolog 13" [Arabidopsis thaliana (taxid:3702)]

 Score = 449 (163.1 bits), Expect = 1.9e-42, P = 1.9e-42
 Identities = 88/146 (60%), Positives = 110/146 (75%)

Query:     3 MASLQARKGRLRQRYEDQLRLVAGCIPYKFEKNDENKNCKM--EKKVLVLMISTPNRDDL 60
             M++L AR GR  QRY++  RLV+GCIPY+  K++E  +  +  E K+ VLMIS+PNR DL
Sbjct:     1 MSNLSARTGRDHQRYDNNFRLVSGCIPYRLVKDEEEDSTSVDFENKLQVLMISSPNRHDL 60

Query:    61 VFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNS-KEGGCRG 119
             VFPKGGWEDDETV EAA REA+EEAGV+G+L E+PLG WEFRSKS     +    GGC+G
Sbjct:    61 VFPKGGWEDDETVLEAASREAMEEAGVKGILREDPLGVWEFRSKSSSVEADCCLGGGCKG 120

Query:   120 YMFALEVTEELESWPEQANYKRIWVS 145
             YMFALEV EEL  WPEQ + +R W++
Sbjct:   121 YMFALEVKEELAIWPEQDDRERRWLN 146

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0016787 "hydrolase activity" evidence=IEA;ISS;IDA

GO:0034432 "bis(5'-adenosyl)-pentaphosphatase activity" evidence=IDA

TAIR|locus:2010331 NUDT12 "nudix hydrolase homolog 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 444 (161.4 bits), Expect = 6.6e-42, P = 6.6e-42
 Identities = 88/146 (60%), Positives = 108/146 (73%)

Query:     3 MASLQARKGRLRQRYEDQLRLVAGCIPYKFEKNDENKN---CKMEKKVLVLMISTPNRDD 59
             M+ L +R GR RQRY++  RLV+GCIPY+  K DE +         K+ VLM+S+PNR D
Sbjct:     1 MSVLSSRTGRDRQRYDNNFRLVSGCIPYRLMKADETEEDSGVDFVNKLEVLMVSSPNRHD 60

Query:    60 LVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRG 119
             LVFPKGGWEDDETV EAA REA+EEAGV+G+L E PLG WEFRSKS     +   GGC+G
Sbjct:    61 LVFPKGGWEDDETVLEAASREAIEEAGVKGILRELPLGVWEFRSKSSTVE-DECLGGCKG 119

Query:   120 YMFALEVTEELESWPEQANYKRIWVS 145
             YMFAL+VTEELE WPE+ N +R W++
Sbjct:   120 YMFALKVTEELEDWPERKNRERRWLT 145

GO:0005739 "mitochondrion" evidence=ISM

GO:0016787 "hydrolase activity" evidence=IEA;ISS

TAIR|locus:2091275 NUDT16 "nudix hydrolase homolog 16" [Arabidopsis thaliana (taxid:3702)]

 Score = 375 (137.1 bits), Expect = 1.3e-34, P = 1.3e-34
 Identities = 77/143 (53%), Positives = 101/143 (70%)

Query:     3 MASLQARKGRLRQRYEDQLRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDLVF 62
             M  L AR GRL+QRYED  RLVAGCIP+++  +D++ N +  K + VLMIS+ +   L+F
Sbjct:     1 MCDLVARTGRLQQRYEDGSRLVAGCIPFRYVNSDKDGNSESGKVIQVLMISSSSGPGLLF 60

Query:    63 PKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMF 122
             PKGGWE+DETV EAA REA+EEAGVRG+L +  LG +EF+SKS  +   S EG C+  M+
Sbjct:    61 PKGGWENDETVREAAAREAVEEAGVRGILMDF-LGNYEFKSKSHQDEF-SPEGLCKAAMY 118

Query:   123 ALEVTEELESWPEQANYKRIWVS 145
             AL V EEL +WPE     R W++
Sbjct:   119 ALYVKEELATWPEHETRTRKWLT 141

GO:0005739 "mitochondrion" evidence=ISM

GO:0016787 "hydrolase activity" evidence=IEA;ISS

TAIR|locus:2065440 NUDT17 "nudix hydrolase homolog 17" [Arabidopsis thaliana (taxid:3702)]

 Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
 Identities = 68/143 (47%), Positives = 90/143 (62%)

Query:     3 MASLQARKGRLRQRYEDQLRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDLVF 62
             M  L +R GR  QRY    R V GC+PY+F+ +++ K   +  +V VL+IS+     L+F
Sbjct:     6 MVCLASRTGRQFQRYNKGRRQVVGCVPYRFKLSNDGK---ISDEVEVLVISSQKGHALMF 62

Query:    63 PKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMF 122
             PKGGWE DE+V EAA RE LEEAGV G + E+ LG+W+F SKSR            G MF
Sbjct:    63 PKGGWELDESVEEAASRECLEEAGVLGNV-EHQLGKWDFLSKSRGTYYE-------GLMF 114

Query:   123 ALEVTEELESWPEQANYKRIWVS 145
              + VTE+LE WPEQ   +RIW++
Sbjct:   115 PMLVTEQLELWPEQHVRQRIWMN 137

GO:0005739 "mitochondrion" evidence=ISM

GO:0016787 "hydrolase activity" evidence=IEA;ISS

TAIR|locus:2014164 NUDT4 "nudix hydrolase homolog 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
 Identities = 65/145 (44%), Positives = 93/145 (64%)

Query:     3 MASLQARKGRLRQRYEDQ-LRLVAGCIPYKFEKNDENKNCKMEKKVL-VLMISTPNRDDL 60
             + SL +R GR  QRY+    R V GC+PY+++K + N    +E +V+ VL++S      +
Sbjct:    40 VVSLVSRTGRDLQRYDHAGYRQVVGCVPYRYKKQEVNG---VETQVIQVLLVSAQKGKGM 96

Query:    61 VFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGY 120
             +FPKGGWE DE++ EAA RE +EEAGV G L+E  LG+W+++SK R +  +       GY
Sbjct:    97 LFPKGGWETDESMEEAALRETIEEAGVTGELEEK-LGKWQYKSK-RHSIIHD------GY 148

Query:   121 MFALEVTEELESWPEQANYKRIWVS 145
             MFAL V++E E WPE    +R WVS
Sbjct:   149 MFALLVSQEFERWPEAEMRQRRWVS 173

GO:0009507 "chloroplast" evidence=ISM

GO:0016787 "hydrolase activity" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=RCA

TAIR|locus:2006817 NUDT18 "nudix hydrolase homolog 18" [Arabidopsis thaliana (taxid:3702)]

 Score = 276 (102.2 bits), Expect = 4.2e-24, P = 4.2e-24
 Identities = 66/142 (46%), Positives = 85/142 (59%)

Query:     3 MASLQARKGRLRQRYEDQLRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDLVF 62
             M  L +R GR  QRY    R V GCIPY+ + + +     +  +  VL+IS+     L+F
Sbjct:     1 MVCLVSRTGRQSQRYNKGRRQVVGCIPYRLKISSDGT---ISDEFEVLVISSQKGHALMF 57

Query:    63 PKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMF 122
             PKGGWE DE+V EAA RE+LEEAGV G + E  LG+W+F SKS       K     G+MF
Sbjct:    58 PKGGWELDESVEEAASRESLEEAGVVGNV-ERQLGKWDFLSKS-------KGTFYEGFMF 109

Query:   123 ALEVTEELESWPEQANYKRIWV 144
              + V EELE WPEQ   +RIW+
Sbjct:   110 PMLVKEELELWPEQHLRQRIWM 131

GO:0005739 "mitochondrion" evidence=ISM

GO:0016787 "hydrolase activity" evidence=IEA;ISS

TAIR|locus:2206835 NUDT21 "nudix hydrolase homolog 21" [Arabidopsis thaliana (taxid:3702)]

 Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
 Identities = 59/145 (40%), Positives = 87/145 (60%)

Query:     3 MASLQARKGRLRQRYEDQ-LRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDD-L 60
             + SL +R GR  QRY     R V GC+PY+++K+   +       + VL+IS   +   +
Sbjct:    41 VVSLVSRTGRDLQRYNTAGYRQVVGCVPYRYKKHGGGE-------IEVLLISAQKKGKGM 93

Query:    61 VFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGY 120
             + PKGGWE DE++ EAA RE +EEAGV G L+E+ LG+W+++SK R    +       G+
Sbjct:    94 LLPKGGWEIDESIEEAALRETIEEAGVTGQLEES-LGKWQYKSK-RHTMIHD------GH 145

Query:   121 MFALEVTEELESWPEQANYKRIWVS 145
             MF L V+++ E WPE    +R WVS
Sbjct:   146 MFPLLVSQQFEIWPESEFRQRKWVS 170

GO:0009507 "chloroplast" evidence=ISM

GO:0016787 "hydrolase activity" evidence=IEA;ISS

GO:0010200 "response to chitin" evidence=RCA

ASPGD|ASPL0000000420 ndxD [Emericella nidulans (taxid:162425)]

 Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
 Identities = 54/143 (37%), Positives = 73/143 (51%)

Query:     5 SLQARKGRLRQRYEDQ-LRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDLVFP 63
             S+++R GR  QRY  +  RLVAG +P   +K+            LV+MI +  R   V P
Sbjct:     7 SMESRVGRKNQRYGSKGERLVAGVVPLSKDKS------------LVMMIQSAGRGGWVLP 54

Query:    64 KGGWEDDE-TVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMF 122
             KGGWE DE +  +AACREA EEAGV   +  + LG       S M + NS     +   F
Sbjct:    55 KGGWETDEASAQQAACREAWEEAGVICTVLRD-LGTISDMRPSTMLTSNSPRASYQ--FF 111

Query:   123 ALEVTEELESWPEQANYKRIWVS 145
              + V  E + WPE    +R WV+
Sbjct:   112 EVTVDREEDRWPEMHKRRRQWVT 134

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0034432 "bis(5'-adenosyl)-pentaphosphatase activity" evidence=IEA

GO:0008486 "diphosphoinositol-polyphosphate diphosphatase activity" evidence=IEA

GO:0000298 "endopolyphosphatase activity" evidence=IEA

GO:0034431 "bis(5'-adenosyl)-hexaphosphatase activity" evidence=IEA

GO:0015961 "diadenosine polyphosphate catabolic process" evidence=IEA

GO:0046855 "inositol phosphate dephosphorylation" evidence=IEA

GO:0006798 "polyphosphate catabolic process" evidence=IEA

UNIPROTKB|G4MKT5 MGG_06680 "Nudix/MutT family protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
 Identities = 53/144 (36%), Positives = 74/144 (51%)

Query:     5 SLQARKGRLRQRYEDQ-LRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDLVFP 63
             ++Q+R GR +QRY  +  RLVAG +               E K  VL+  +  R   V P
Sbjct:    13 TMQSRTGRSKQRYNSKGERLVAGVVALS------------EDKEYVLLTQSTRRKGWVLP 60

Query:    64 KGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWE-FRSKSRMNSCNS-KEGGCRGYM 121
             KGGWE DE  +EAA REA EEAG+   +D + LG+ E  R K+   S  S K      + 
Sbjct:    61 KGGWETDEECTEAAEREAWEEAGIVVTIDYD-LGQIEETRVKTSSKSAKSGKREKAIYHF 119

Query:   122 FALEVTEELESWPEQANYKRIWVS 145
             +   VT E + WPE+   +R W++
Sbjct:   120 YEATVTSEEQDWPEKDKRQRKWMT 143

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

POMBASE|SPAC13G6.14 aps1 "diadenosine 5',5'''-p1,p6-hexaphosphate hydrolase Aps1" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 119 (46.9 bits), Expect = 4.2e-10, Sum P(2) = 4.2e-10
 Identities = 35/98 (35%), Positives = 51/98 (52%)

Query:     5 SLQARKGRLRQRYED--QLRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDLVF 62
             S+ +R+GR + R+      RL AG +    +K          +KVL L+ S       V 
Sbjct:    23 SMTSREGRTKNRFNPITGARLAAGVVALSADK----------RKVL-LVSSAKKHPSWVV 71

Query:    63 PKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWE 100
             PKGGWE DE+V +AA RE  EE G+ G +  + LG ++
Sbjct:    72 PKGGWEADESVQQAALREGWEEGGLVGHITRS-LGSFK 108

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0008486 "diphosphoinositol-polyphosphate diphosphatase activity" evidence=IEA

GO:0015959 "diadenosine polyphosphate metabolic process" evidence=IDA

GO:0034431 "bis(5'-adenosyl)-hexaphosphatase activity" evidence=IDA

GO:0034432 "bis(5'-adenosyl)-pentaphosphatase activity" evidence=IDA

GO:0046872 "metal ion binding" evidence=IEA

GO:0052840 "inositol diphosphate tetrakisphosphate diphosphatase activity" evidence=IEA

GO:0052843 "inositol-1-diphosphate-2,3,4,5,6-pentakisphosphate diphosphatase activity" evidence=IEA

GO:0052844 "inositol-3-diphosphate-1,2,4,5,6-pentakisphosphate diphosphatase activity" evidence=IEA

GO:0052845 "inositol-5-diphosphate-1,2,3,4,6-pentakisphosphate diphosphatase activity" evidence=IEA

GO:0052846 "inositol-1,5-bisdiphosphate-2,3,4,6-tetrakisphosphate 1-diphosphatase activity" evidence=IEA

GO:0052847 "inositol-1,5-bisdiphosphate-2,3,4,6-tetrakisphosphate 5-diphosphatase activity" evidence=IEA

GO:0052848 "inositol-3,5-bisdiphosphate-2,3,4,6-tetrakisphosphate 5-diphosphatase activity" evidence=IEA

GO:0071544 "diphosphoinositol polyphosphate catabolic process" evidence=IDA

GO:1901907 "diadenosine pentaphosphate catabolic process" evidence=IDA

GO:1901909 "diadenosine hexaphosphate catabolic process" evidence=IDA

GO:1901911 "adenosine 5'-(hexahydrogen pentaphosphate) catabolic process" evidence=IDA

GO:0047710 "bis(5'-adenosyl)-triphosphatase activity" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q52K88	NUD13_ARATH	3, ., 6, ., 1, ., -	0.6027	0.8827	0.7079	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.6.1	0.766
3rd Layer	3.6.1.13	0.824

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	162
cd04666	122	cd04666, Nudix_Hydrolase_9, Members of the Nudix h	1e-38
pfam00293	133	pfam00293, NUDIX, NUDIX domain	2e-08
cd03673	131	cd03673, Ap6A_hydrolase, Diadenosine hexaphosphate	2e-08
cd04687	128	cd04687, Nudix_Hydrolase_28, Members of the Nudix	3e-07
cd02883	123	cd02883, Nudix_Hydrolase, Nudix hydrolase is a sup	3e-07
cd04686	131	cd04686, Nudix_Hydrolase_27, Members of the Nudix	1e-06
cd03428	130	cd03428, Ap4A_hydrolase_human_like, Diadenosine te	7e-06
cd04669	121	cd04669, Nudix_Hydrolase_11, Members of the Nudix	8e-06
cd03424	137	cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase	1e-05
COG0494	161	COG0494, MutT, NTP pyrophosphohydrolases including	2e-05
COG1051	145	COG1051, COG1051, ADP-ribose pyrophosphatase [Nucl	1e-04
cd04683	120	cd04683, Nudix_Hydrolase_24, Members of the Nudix	4e-04
cd04511	130	cd04511, Nudix_Hydrolase_4, Members of the Nudix h	4e-04
PRK11762	185	PRK11762, nudE, adenosine nucleotide hydrolase Nud	0.001
cd03671	147	cd03671, Ap4A_hydrolase_plant_like, Diadenosine te	0.002
cd03426	157	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse)	0.002
PRK00714	156	PRK00714, PRK00714, RNA pyrophosphohydrolase; Revi	0.003
cd04665	118	cd04665, Nudix_Hydrolase_8, Members of the Nudix h	0.004
cd03675	134	cd03675, Nudix_Hydrolase_2, Contains a crystal str	0.004

>gnl|CDD|240024 cd04666, Nudix_Hydrolase_9, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score =  127 bits (321), Expect = 1e-38
 Identities = 51/123 (41%), Positives = 70/123 (56%), Gaps = 15/123 (12%)

Query: 23  LVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREAL 82
           L AG IPY+              +V VL++++      + PKGG E DE+ +EAA REA 
Sbjct: 1   LQAGAIPYRETG----------GEVEVLLVTSRRTGRWIVPKGGPEKDESPAEAAAREAW 50

Query: 83  EEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRI 142
           EEAGVRG + + PLG +E+R +S+     ++   C   +F LEVTEEL+ WPE    KR 
Sbjct: 51  EEAGVRGKIGKRPLGRFEYRKRSK-----NRPPRCEVAVFPLEVTEELDEWPEMHQRKRK 105

Query: 143 WVS 145
           W S
Sbjct: 106 WFS 108

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 122

>gnl|CDD|215841 pfam00293, NUDIX, NUDIX domain

 Score = 50.2 bits (120), Expect = 2e-08
 Identities = 26/130 (20%), Positives = 39/130 (30%), Gaps = 25/130 (19%)

Query: 21  LRLVAGCIPYKFEKNDENKNCKMEKKVLVLMI----STPNRDDLVFPKGGWEDDETVSEA 76
            R   G +      N++ +         VL++              P G  E  E+  EA
Sbjct: 1   RRRAVGVVLL----NEDGE---------VLLVRRSRPPVFPGLWELPGGKVEPGESPEEA 47

Query: 77  ACREALEEAGVRGLLDENPL-GEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEELESWPE 135
           A RE  EE G+R LL       E+    +               ++  L   E      E
Sbjct: 48  AVRELEEETGLRVLLLLLLGVLEYPAPGRDGGEH-------VHVFLAELLGGEPEPQPNE 100

Query: 136 QANYKRIWVS 145
               +  WV 
Sbjct: 101 DEVSEVRWVP 110

Length = 133

>gnl|CDD|239645 cd03673, Ap6A_hydrolase, Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily

 Score = 49.6 bits (119), Expect = 2e-08
 Identities = 24/50 (48%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 49 VLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGE 98
          VL+I  P  DD   PKG  E  ET  EAA RE  EE G+R  + + PLG 
Sbjct: 18 VLLIHRPRGDDWSLPKGKLEPGETPPEAAVREVEEETGIRAEVGD-PLGT 66

Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Length = 131

>gnl|CDD|240043 cd04687, Nudix_Hydrolase_28, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 46.7 bits (111), Expect = 3e-07
 Identities = 25/83 (30%), Positives = 32/83 (38%), Gaps = 12/83 (14%)

Query: 46  KVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAG----------VRGLLDENP 95
           K+L++          + P GG E  ET+ +AA RE  EE G          VR  +  NP
Sbjct: 13  KILLIKHHDDGGVWYILPGGGQEPGETLEDAAHRECKEEIGIDVEIGPLLFVREYIGHNP 72

Query: 96  LGEW--EFRSKSRMNSCNSKEGG 116
             E    F     M  C  K G 
Sbjct: 73  TSELPGHFHQVELMFECKIKSGT 95

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 128

>gnl|CDD|239217 cd02883, Nudix_Hydrolase, Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 46.3 bits (110), Expect = 3e-07
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 3/58 (5%)

Query: 49  VLMI--STPNRDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSK 104
           VL++  +         P GG E  ET+ EAA RE  EE G+  +     LG +E  S 
Sbjct: 14  VLLVRRADSPGGLWELPGGGVEPGETLEEAAIREVREETGLD-VDVLRLLGVYEVESP 70

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzymes. Substrate specificity is used to define child families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. This superfamily consists of at least nine families: IPP (isopentenyl diphosphate) isomerase, ADP ribose pyrophosphatase, mutT pyrophosphohydrolase, coenzyme-A pyrophosphatase, MTH1-7,8-dihydro-8-oxoguanine-triphosphatase, diadenosine tetraphosphate hydrolase, NADH pyrophosphatase, GDP-mannose hydrolase and the c-terminal portion of the mutY adenine glycosylase. Length = 123

>gnl|CDD|240042 cd04686, Nudix_Hydrolase_27, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 44.7 bits (106), Expect = 1e-06
 Identities = 29/111 (26%), Positives = 39/111 (35%), Gaps = 23/111 (20%)

Query: 48  LVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSR- 106
            +L++ T    D  FP GG E  E   E   RE  EE G   +      G +  R   R 
Sbjct: 12  KILLLYTKRYGDYKFPGGGVEKGEDHIEGLIRELQEETGATNIRVIEKFGTYTERRPWRK 71

Query: 107 -------MNSCNSKEGGCRGYMFALEVTEE-----LESWPEQANYKRIWVS 145
                  M S          Y +  EV  E     LE +  +   K IW++
Sbjct: 72  PDADIFHMIS----------YYYLCEVDAELGAQQLEDYEAELGMKPIWIN 112

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 131

>gnl|CDD|239520 cd03428, Ap4A_hydrolase_human_like, Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily

 Score = 43.0 bits (102), Expect = 7e-06
 Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 11/63 (17%)

Query: 25 AGCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEE 84
          AG I Y+   N          ++  L++         FPKG  E  E   EAA RE  EE
Sbjct: 5  AGAIIYRRLNN----------EIEYLLLQAS-YGHWDFPKGHVEPGEDDLEAALRETEEE 53

Query: 85 AGV 87
           G+
Sbjct: 54 TGI 56

Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and catalytic site, and a required divalent cation, Ap4A hydrolase is structurally similar to the other members of the nudix superfamily with some degree of variation. Several regions in the sequences are poorly defined and substrate and metal binding sites are only predicted based on kinetic studies. Length = 130

>gnl|CDD|240026 cd04669, Nudix_Hydrolase_11, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 42.4 bits (100), Expect = 8e-06
 Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 5/99 (5%)

Query: 46  KVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKS 105
           ++L++    P +   VFP GG E+ ET  EAA REALEE G+   ++E  L     ++  
Sbjct: 13  EILLIRRIKPGKTYYVFPGGGIEEGETPEEAAKREALEELGLDVRVEEIFL--IVNQNGR 70

Query: 106 RMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWV 144
             +   ++          L V EE E   +   Y  +WV
Sbjct: 71  TEHYFLARVISG---KLGLGVGEEFERQSDDNQYHPVWV 106

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 121

>gnl|CDD|239516 cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate

 Score = 42.5 bits (101), Expect = 1e-05
 Identities = 11/28 (39%), Positives = 12/28 (42%)

Query: 62 FPKGGWEDDETVSEAACREALEEAGVRG 89
           P G  +  E   EAA RE  EE G   
Sbjct: 33 LPAGLIDPGEDPEEAARRELEEETGYEA 60

Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirement for metal ions. NUDT5 forms a homodimer. Length = 137

>gnl|CDD|223568 COG0494, MutT, NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]

 Score = 42.1 bits (98), Expect = 2e-05
 Identities = 25/95 (26%), Positives = 32/95 (33%), Gaps = 7/95 (7%)

Query: 44  EKKVLVLMISTPNRDD-LVFPKGGWEDDET-VSEAACREALEEAGVRG-LLDENPLGEWE 100
           +    VL+    +       P G  E  E    EAA RE  EE G+R        LGE+ 
Sbjct: 21  DGPGEVLLAQRRDDGGLWELPGGKVEPGEELPEEAAARELEEETGLRVKDERLELLGEFP 80

Query: 101 FRSKSRMNSCNSKEGGCRGYMFALEVTEELESWPE 135
                     +S  G      F  EV + L    E
Sbjct: 81  PSPGDG----SSVGGREHRVFFVAEVDDSLAVAIE 111

Length = 161

>gnl|CDD|223979 COG1051, COG1051, ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]

 Score = 40.1 bits (94), Expect = 1e-04
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 3/43 (6%)

Query: 49 VLMI---STPNRDDLVFPKGGWEDDETVSEAACREALEEAGVR 88
          +L++   + P       P G  E  ET+ EAA RE  EE G+R
Sbjct: 23 ILLVRRANEPGAGYWALPGGFVEIGETLEEAARRELKEETGLR 65

Length = 145

>gnl|CDD|240039 cd04683, Nudix_Hydrolase_24, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 37.7 bits (88), Expect = 4e-04
 Identities = 13/31 (41%), Positives = 15/31 (48%)

Query: 63 PKGGWEDDETVSEAACREALEEAGVRGLLDE 93
          P G  E  E    AA REA EE GV    ++
Sbjct: 31 PAGHLEKGEDAVTAAVREAREEIGVTLDPED 61

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 120

>gnl|CDD|239948 cd04511, Nudix_Hydrolase_4, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 38.0 bits (89), Expect = 4e-04
 Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 13/73 (17%)

Query: 22 RLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDL-VFPKGGWEDDETVSEAACRE 80
          +++ GC+P              E KVL+   +   R      P G  E+ ET  + A RE
Sbjct: 13 KIIVGCVPEW------------EGKVLLCRRAIEPRHGFWTLPAGFMENGETTEQGALRE 60

Query: 81 ALEEAGVRGLLDE 93
            EEAG R  +D 
Sbjct: 61 TWEEAGARVEIDG 73

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 130

>gnl|CDD|183303 PRK11762, nudE, adenosine nucleotide hydrolase NudE; Provisional

 Score = 37.1 bits (87), Expect = 0.001
 Identities = 15/27 (55%), Positives = 16/27 (59%)

Query: 60  LVFPKGGWEDDETVSEAACREALEEAG 86
           L FPKG  +  ET  EAA RE  EE G
Sbjct: 76  LGFPKGLIDPGETPLEAANRELKEEVG 102

Length = 185

>gnl|CDD|239643 cd03671, Ap4A_hydrolase_plant_like, Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily

 Score = 36.4 bits (85), Expect = 0.002
 Identities = 12/27 (44%), Positives = 17/27 (62%)

Query: 62 FPKGGWEDDETVSEAACREALEEAGVR 88
          FP+GG ++ E   +AA RE  EE G+ 
Sbjct: 31 FPQGGIDEGEDPEQAALRELEEETGLD 57

Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally similar to the other members of the nudix superfamily with some degree of variations. Several regions in the sequences are poorly defined and substrate and metal binding sites are only predicted based on kinetic studies. Length = 147

>gnl|CDD|239518 cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes

 Score = 36.4 bits (85), Expect = 0.002
 Identities = 12/28 (42%), Positives = 14/28 (50%), Gaps = 1/28 (3%)

Query: 62 FPKGGWE-DDETVSEAACREALEEAGVR 88
          FP G  +  DE     A REA EE G+ 
Sbjct: 36 FPGGKVDPGDEDPVATALREAEEEIGLP 63

The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules. Length = 157

>gnl|CDD|234820 PRK00714, PRK00714, RNA pyrophosphohydrolase; Reviewed

 Score = 35.9 bits (84), Expect = 0.003
 Identities = 13/27 (48%), Positives = 17/27 (62%)

Query: 62 FPKGGWEDDETVSEAACREALEEAGVR 88
          FP+GG +  ET  +A  RE  EE G+R
Sbjct: 36 FPQGGIDPGETPEQAMYRELYEEVGLR 62

Length = 156

>gnl|CDD|240023 cd04665, Nudix_Hydrolase_8, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 35.0 bits (81), Expect = 0.004
 Identities = 14/28 (50%), Positives = 15/28 (53%)

Query: 62 FPKGGWEDDETVSEAACREALEEAGVRG 89
          FP G  E  ET+ EAA RE  EE G   
Sbjct: 25 FPGGHVEPGETIEEAARREVWEETGAEL 52

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 118

>gnl|CDD|239647 cd03675, Nudix_Hydrolase_2, Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function

 Score = 35.2 bits (82), Expect = 0.004
 Identities = 13/25 (52%), Positives = 15/25 (60%)

Query: 62 FPKGGWEDDETVSEAACREALEEAG 86
           P G  E  E++ EAA RE LEE G
Sbjct: 28 QPAGHLEPGESLIEAAVRETLEETG 52

In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 134

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	162
cd04666	122	Nudix_Hydrolase_9 Members of the Nudix hydrolase s	99.93
KOG2839	145	consensus Diadenosine and diphosphoinositol polyph	99.92
cd03673	131	Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hy	99.91
cd04679	125	Nudix_Hydrolase_20 Members of the Nudix hydrolase	99.89
cd04680	120	Nudix_Hydrolase_21 Members of the Nudix hydrolase	99.89
cd03428	130	Ap4A_hydrolase_human_like Diadenosine tetraphospha	99.89
cd04677	132	Nudix_Hydrolase_18 Members of the Nudix hydrolase	99.88
cd04684	128	Nudix_Hydrolase_25 Contains a crystal structure of	99.87
cd03430	144	GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mann	99.87
PRK15434	159	GDP-mannose mannosyl hydrolase NudD; Provisional	99.87
cd04700	142	DR1025_like DR1025 from Deinococcus radiodurans, a	99.87
cd03674	138	Nudix_Hydrolase_1 Members of the Nudix hydrolase s	99.87
cd04695	131	Nudix_Hydrolase_36 Members of the Nudix hydrolase	99.87
cd04689	125	Nudix_Hydrolase_30 Members of the Nudix hydrolase	99.87
cd03671	147	Ap4A_hydrolase_plant_like Diadenosine tetraphospha	99.87
cd04696	125	Nudix_Hydrolase_37 Members of the Nudix hydrolase	99.86
cd03672	145	Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalyt	99.86
PRK09438	148	nudB dihydroneopterin triphosphate pyrophosphatase	99.86
PLN02325	144	nudix hydrolase	99.86
cd04673	122	Nudix_Hydrolase_15 Members of the Nudix hydrolase	99.86
cd04687	128	Nudix_Hydrolase_28 Members of the Nudix hydrolase	99.86
cd04678	129	Nudix_Hydrolase_19 Members of the Nudix hydrolase	99.85
cd04667	112	Nudix_Hydrolase_10 Members of the Nudix hydrolase	99.85
cd04688	126	Nudix_Hydrolase_29 Members of the Nudix hydrolase	99.85
cd04672	123	Nudix_Hydrolase_14 Members of the Nudix hydrolase	99.85
cd04690	118	Nudix_Hydrolase_31 Members of the Nudix hydrolase	99.85
cd03675	134	Nudix_Hydrolase_2 Contains a crystal structure of	99.85
cd04664	129	Nudix_Hydrolase_7 Members of the Nudix hydrolase s	99.85
cd04669	121	Nudix_Hydrolase_11 Members of the Nudix hydrolase	99.84
cd04676	129	Nudix_Hydrolase_17 Members of the Nudix hydrolase	99.84
cd04670	127	Nudix_Hydrolase_12 Members of the Nudix hydrolase	99.84
cd04686	131	Nudix_Hydrolase_27 Members of the Nudix hydrolase	99.84
cd04511	130	Nudix_Hydrolase_4 Members of the Nudix hydrolase s	99.84
cd03424	137	ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase)	99.83
PF00293	134	NUDIX: NUDIX domain; InterPro: IPR000086 The gener	99.83
COG1051	145	ADP-ribose pyrophosphatase [Nucleotide transport a	99.83
cd04682	122	Nudix_Hydrolase_23 Members of the Nudix hydrolase	99.83
cd04691	117	Nudix_Hydrolase_32 Members of the Nudix hydrolase	99.83
cd04683	120	Nudix_Hydrolase_24 Members of the Nudix hydrolase	99.83
cd04681	130	Nudix_Hydrolase_22 Members of the Nudix hydrolase	99.83
cd03427	137	MTH1 MutT homolog-1 (MTH1) is a member of the Nudi	99.83
PRK00714	156	RNA pyrophosphohydrolase; Reviewed	99.82
cd04671	123	Nudix_Hydrolase_13 Members of the Nudix hydrolase	99.82
cd03426	157	CoAse Coenzyme A pyrophosphatase (CoAse), a member	99.82
cd04661	132	MRP_L46 Mitochondrial ribosomal protein L46 (MRP L	99.81
cd03429	131	NADH_pyrophosphatase NADH pyrophosphatase, a membe	99.81
PRK15472	141	nucleoside triphosphatase NudI; Provisional	99.81
cd04697	126	Nudix_Hydrolase_38 Members of the Nudix hydrolase	99.81
cd02885	165	IPP_Isomerase Isopentenyl diphosphate (IPP) isomer	99.81
cd04692	144	Nudix_Hydrolase_33 Members of the Nudix hydrolase	99.8
cd04693	127	Nudix_Hydrolase_34 Members of the Nudix hydrolase	99.8
cd04662	126	Nudix_Hydrolase_5 Members of the Nudix hydrolase s	99.8
PRK10546	135	pyrimidine (deoxy)nucleoside triphosphate pyrophos	99.78
PRK03759	184	isopentenyl-diphosphate delta-isomerase; Provision	99.78
cd04699	129	Nudix_Hydrolase_39 Members of the Nudix hydrolase	99.77
PRK11762	185	nudE adenosine nucleotide hydrolase NudE; Provisio	99.77
PRK15393	180	NUDIX hydrolase YfcD; Provisional	99.77
cd04665	118	Nudix_Hydrolase_8 Members of the Nudix hydrolase s	99.77
PRK10729	202	nudF ADP-ribose pyrophosphatase NudF; Provisional	99.75
TIGR00052	185	nudix-type nucleoside diphosphatase, YffH/AdpP fam	99.75
cd04694	143	Nudix_Hydrolase_35 Members of the Nudix hydrolase	99.75
cd02883	123	Nudix_Hydrolase Nudix hydrolase is a superfamily o	99.75
PRK05379	340	bifunctional nicotinamide mononucleotide adenylylt	99.75
PRK00241	256	nudC NADH pyrophosphatase; Reviewed	99.74
cd04685	133	Nudix_Hydrolase_26 Members of the Nudix hydrolase	99.73
PRK10776	129	nucleoside triphosphate pyrophosphohydrolase; Prov	99.73
TIGR02150	158	IPP_isom_1 isopentenyl-diphosphate delta-isomerase	99.72
TIGR02705	156	nudix_YtkD nucleoside triphosphatase YtkD. The fun	99.71
cd03425	124	MutT_pyrophosphohydrolase The MutT pyrophosphohydr	99.71
cd03676	180	Nudix_hydrolase_3 Members of the Nudix hydrolase s	99.7
PRK10707	190	putative NUDIX hydrolase; Provisional	99.69
TIGR00586	128	mutt mutator mutT protein. All proteins in this fa	99.69
PRK15009	191	GDP-mannose pyrophosphatase NudK; Provisional	99.67
cd04663	126	Nudix_Hydrolase_6 Members of the Nudix hydrolase s	99.64
cd03670	186	ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase)	99.63
cd04674	118	Nudix_Hydrolase_16 Members of the Nudix hydrolase	99.61
PRK08999	312	hypothetical protein; Provisional	99.59
PLN02709	222	nudix hydrolase	99.56
COG0494	161	MutT NTP pyrophosphohydrolases including oxidative	99.48
COG2816	279	NPY1 NTP pyrophosphohydrolases containing a Zn-fin	99.45
PLN03143	291	nudix hydrolase; Provisional	99.44
COG4119	161	Predicted NTP pyrophosphohydrolase [DNA replicatio	99.39
PLN02552	247	isopentenyl-diphosphate delta-isomerase	99.36
PLN02791	770	Nudix hydrolase homolog	99.3
KOG3084	345	consensus NADH pyrophosphatase I of the Nudix fami	99.29
KOG3041	225	consensus Nucleoside diphosphate-sugar hydrolase o	99.11
KOG3069	246	consensus Peroxisomal NUDIX hydrolase [Replication	98.94
cd03431	118	DNA_Glycosylase_C DNA glycosylase (MutY in bacteri	98.93
KOG0648	295	consensus Predicted NUDIX hydrolase FGF-2 and rela	98.87
PLN02839	372	nudix hydrolase	98.72
COG1443	185	Idi Isopentenyldiphosphate isomerase [Lipid metabo	98.6
KOG4195	275	consensus Transient receptor potential-related cha	98.49
PF14815	114	NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3	98.08
KOG2937	348	consensus Decapping enzyme complex, predicted pyro	97.76
PF13869	188	NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B	97.68
COG4112	203	Predicted phosphoesterase (MutT family) [General f	97.08
KOG4432	405	consensus Uncharacterized NUDIX family hydrolase [	96.82
KOG1689	221	consensus mRNA cleavage factor I subunit [RNA proc	96.59
KOG0142	225	consensus Isopentenyl pyrophosphate:dimethylallyl	96.0
KOG4548	263	consensus Mitochondrial ribosomal protein L17 [Tra	95.64
KOG4313	306	consensus Thiamine pyrophosphokinase [Nucleotide t	95.31
PRK10880	350	adenine DNA glycosylase; Provisional	92.82
KOG4432	405	consensus Uncharacterized NUDIX family hydrolase [	91.73
PF07026	60	DUF1317: Protein of unknown function (DUF1317); In	84.01
PF03487	43	IL13: Interleukin-13; InterPro: IPR020470 Interleu	80.16

>cd04666 Nudix_Hydrolase_9 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.93  E-value=1.5e-24  Score=150.88  Aligned_cols=116  Identities=44%  Similarity=0.726  Sum_probs=89.3

Q ss_pred             eEEEEEEEeccCCcccccccccCceEEEEEEeCCCCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeeeEEee
Q 031268           23 LVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFR  102 (162)
Q Consensus        23 ~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~~~~~  102 (162)
                      +++|+||++.++          +..+|||+++...+.|.||||++++|||+++||+||++||||+.+.....+++.+.+.
T Consensus         1 ~~~g~v~~~~~~----------~~~~vLLv~~~~~~~w~~PgG~ve~~E~~~~aa~RE~~EEtG~~~~~~~~~l~~~~~~   70 (122)
T cd04666           1 LQAGAIPYRETG----------GEVEVLLVTSRRTGRWIVPKGGPEKDESPAEAAAREAWEEAGVRGKIGKRPLGRFEYR   70 (122)
T ss_pred             CEEEEEEEEEcC----------CceEEEEEEecCCCeEECCCCCcCCCCCHHHHHHHHHHHHhCCcccccceEEEEEEee
Confidence            478999999764          3579999999877889999999999999999999999999999865441367887765


Q ss_pred             cccccccCCCCCCceEEEEEEEEecccccCCcccccceeEEeeHhHHhhhh
Q 031268          103 SKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWVSNNHFLWRK  153 (162)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~W~~~~ea~~~~  153 (162)
                      .....     ......+++|.+.+......+++.+...++|+++++|.+++
T Consensus        71 ~~~~~-----~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~ea~~~~  116 (122)
T cd04666          71 KRSKN-----RPPRCEVAVFPLEVTEELDEWPEMHQRKRKWFSPEEAALLV  116 (122)
T ss_pred             ecCCC-----CCceEEEEEEEEEEeccccCCcccCceEEEEecHHHHHHhc
Confidence            44211     12234677888877665444455556789999999999875

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>KOG2839 consensus Diadenosine and diphosphoinositol polyphosphate phosphohydrolase [Signal transduction mechanisms]

Probab=99.92  E-value=2.9e-25  Score=154.62  Aligned_cols=123  Identities=45%  Similarity=0.709  Sum_probs=101.1

Q ss_pred             cccc-cCceeEEEEEEEeccCCcccccccccCceEEEEEEeCC-CCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccC
Q 031268           15 QRYE-DQLRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPN-RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLD   92 (162)
Q Consensus        15 ~~~~-~~~r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~-~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~   92 (162)
                      +||+ .|+|+++||||++.++          ...+||||...+ .+.|.+|+|++|++||..+||+||..||+|+.+...
T Consensus         1 qry~~~G~r~vagCi~~r~~~----------~~ieVLlvsSs~~~~~wi~PKGGwE~dE~~~eAA~REt~EEAGv~G~l~   70 (145)
T KOG2839|consen    1 QRYDPAGFRLVAGCICYRSDK----------EKIEVLLVSSSKKPHRWIVPKGGWEPDESVEEAALRETWEEAGVKGKLG   70 (145)
T ss_pred             CccCCCCcEEEEEeeeeeecC----------cceEEEEEecCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHhCceeeee
Confidence            4677 8999999999999885          257999999987 567999999999999999999999999999998877


Q ss_pred             CCCeeeEEeecccccccCCCCCCceEEEEEEEEecccccCCcccc--cceeEEeeHhHHhhhhc
Q 031268           93 ENPLGEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQA--NYKRIWVSNNHFLWRKH  154 (162)
Q Consensus        93 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~--~~~~~W~~~~ea~~~~~  154 (162)
                      ..+.+.+++.+.....       .+..++|.+.+.+....+|+.+  .++.+|++++||...+.
T Consensus        71 ~~~~g~~~~~~~~~~~-------~~k~~~~~l~v~e~le~wp~~~~~~r~r~W~~ledA~~~~~  127 (145)
T KOG2839|consen   71 RLLGGFEDFLSKKHRT-------KPKGVMYVLAVTEELEDWPESEHEFREREWLKLEDAIELCQ  127 (145)
T ss_pred             ccccchhhccChhhcc-------cccceeehhhhhhhcccChhhhcccceeEEeeHHHHHHHHh
Confidence            3355555565554332       2467889888888888888777  68999999999998754

>cd03673 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily

Probab=99.91  E-value=9e-24  Score=147.41  Aligned_cols=123  Identities=27%  Similarity=0.311  Sum_probs=90.2

Q ss_pred             eeEEEEEEEeccCCcccccccccCceEEEEEEeCCCCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeeeEEe
Q 031268           22 RLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEF  101 (162)
Q Consensus        22 r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~~~~  101 (162)
                      +++|++|+++.++          ++++|||+++++.+.|.||||++++|||+++||.||++||||+.+... ..++.+.+
T Consensus         1 ~~~a~~ii~~~~~----------~~~~vLl~~~~~~~~w~~PgG~v~~gEs~~~aa~REl~EEtGl~~~~~-~~~~~~~~   69 (131)
T cd03673           1 VLAAGGVVFRGSD----------GGIEVLLIHRPRGDDWSLPKGKLEPGETPPEAAVREVEEETGIRAEVG-DPLGTIRY   69 (131)
T ss_pred             CeeEEEEEEEccC----------CCeEEEEEEcCCCCcccCCCCccCCCCCHHHHHHHHHhhhhCCceEec-ceEEEEEE
Confidence            4688999998764          368999999987788999999999999999999999999999998766 46776655


Q ss_pred             ecccccccCCCCCCceEEEEEEEEecccccCC-cccccceeEEeeHhHHhhhh-ccccccc
Q 031268          102 RSKSRMNSCNSKEGGCRGYMFALEVTEELESW-PEQANYKRIWVSNNHFLWRK-HSNLVGM  160 (162)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~-~~~~~~~~~W~~~~ea~~~~-~~~l~~~  160 (162)
                      ......     .......++|.+......... ++.+..+++|++++++.+++ .++.+++
T Consensus        70 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~  125 (131)
T cd03673          70 WFSSSG-----KRVHKTVHWWLMRALGGEFTPQPDEEVDEVRWLPPDEARDRLSYPNDREL  125 (131)
T ss_pred             eccCCC-----CCcceEEEEEEEEEcCCCcccCCCCcEEEEEEcCHHHHHHHcCCHhHHHH
Confidence            443211     112335667776654432221 34455789999999999864 4555544

Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.

>cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.89  E-value=8e-23  Score=142.20  Aligned_cols=120  Identities=13%  Similarity=0.052  Sum_probs=86.9

Q ss_pred             ceeEEEEEEEeccCCcccccccccCceEEEEEEeCC---CCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCee
Q 031268           21 LRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPN---RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLG   97 (162)
Q Consensus        21 ~r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~---~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~   97 (162)
                      +|..|++++++.+             ++|||++|..   .+.|.||||++|+|||+++||+||++||||+.+... ..++
T Consensus         1 ~~~~~~~~i~~~~-------------~~vLL~~r~~~~~~~~w~lPgG~ve~gEt~~eaa~RE~~EEtGl~~~~~-~~~~   66 (125)
T cd04679           1 PRVGCGAAILRDD-------------GKLLLVKRLRAPEAGHWGIPGGKVDWMEAVEDAVVREIEEETGLSIHST-RLLC   66 (125)
T ss_pred             CceEEEEEEECCC-------------CEEEEEEecCCCCCCeEeCCeeeccCCCCHHHHHHHHHHHHHCCCcccc-eEEE
Confidence            4788999999764             4899999864   367999999999999999999999999999998766 4566


Q ss_pred             eEEeecccccccCCCCCCceEEEEEEEEecccccC-CcccccceeEEeeHhHHhhhhcccccccc
Q 031268           98 EWEFRSKSRMNSCNSKEGGCRGYMFALEVTEELES-WPEQANYKRIWVSNNHFLWRKHSNLVGMI  161 (162)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~-~~~~~~~~~~W~~~~ea~~~~~~~l~~~v  161 (162)
                      .+.+.....       .......+|.+........ ..+++..+++||+++++.+.+.+..+.+|
T Consensus        67 ~~~~~~~~~-------~~~~~~~~f~~~~~~~~~~~~~~~E~~~~~W~~~~~l~~~l~~~~~~~~  124 (125)
T cd04679          67 VVDHIIEEP-------PQHWVAPVYLAENFSGEPRLMEPDKLLELGWFALDALPQPLTRATRDAV  124 (125)
T ss_pred             EEeecccCC-------CCeEEEEEEEEeecCCccccCCCccccEEEEeCHHHCCchhHHHHHHHh
Confidence            554332211       1123445676665433222 22234578999999999988877777665

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.89  E-value=8.7e-23  Score=140.62  Aligned_cols=115  Identities=21%  Similarity=0.196  Sum_probs=85.1

Q ss_pred             EEEEEEEeccCCcccccccccCceEEEEEEeCCCCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccc-cCCCCeeeEEee
Q 031268           24 VAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVRGL-LDENPLGEWEFR  102 (162)
Q Consensus        24 ~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~-~~~~~l~~~~~~  102 (162)
                      .|.+++++.+             ++|||++++..+.|.||||++++|||+++||+||++||||+.+. .. ..++.+.+.
T Consensus         2 ~~~~~i~~~~-------------~~vLL~~r~~~~~w~~PgG~ve~gEt~~~aa~REl~EEtG~~~~~~~-~~~~~~~~~   67 (120)
T cd04680           2 GARAVVTDAD-------------GRVLLVRHTYGPGWYLPGGGLERGETFAEAARRELLEELGIRLAVVA-ELLGVYYHS   67 (120)
T ss_pred             ceEEEEECCC-------------CeEEEEEECCCCcEeCCCCcCCCCCCHHHHHHHHHHHHHCCcccccc-ceEEEEecC
Confidence            4567777654             48999999877789999999999999999999999999999987 55 566766554


Q ss_pred             cccccccCCCCCCceEEEEEEEEecccccCCcccccceeEEeeHhHHhhhhcccccccc
Q 031268          103 SKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWVSNNHFLWRKHSNLVGMI  161 (162)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~W~~~~ea~~~~~~~l~~~v  161 (162)
                      ....         ....++|.+.........++.+..+++||+++++.+.+.+..++++
T Consensus        68 ~~~~---------~~~~~~f~~~~~~~~~~~~~~E~~~~~w~~~~~l~~~~~~~~~~~~  117 (120)
T cd04680          68 ASGS---------WDHVIVFRARADTQPVIRPSHEISEARFFPPDALPEPTTPATRRRI  117 (120)
T ss_pred             CCCC---------ceEEEEEEecccCCCccCCcccEEEEEEECHHHCcccCChHHHHHh
Confidence            3211         2245677776554322334445578999999999988776666554

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03428 Ap4A_hydrolase_human_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily

Probab=99.89  E-value=2.3e-22  Score=140.54  Aligned_cols=123  Identities=20%  Similarity=0.194  Sum_probs=86.4

Q ss_pred             eeEEEEEEEeccCCcccccccccCceEEEEEEeCCCCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeeeEEe
Q 031268           22 RLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEF  101 (162)
Q Consensus        22 r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~~~~  101 (162)
                      +.++|+|+|..++          ++.+|||+++++ +.|.+|||++++|||+.+||+||++||||+.+... ..++.+.+
T Consensus         2 ~~~~g~vi~~~~~----------~~~~vLl~~~~~-~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~-~~~~~~~~   69 (130)
T cd03428           2 ERSAGAIIYRRLN----------NEIEYLLLQASY-GHWDFPKGHVEPGEDDLEAALRETEEETGITAEQL-FIVLGFKE   69 (130)
T ss_pred             ceEEEEEEEEecC----------CCceEEEEEccC-CcCcCCcCCCCCCCCHHHHHHHHHHHHHCCChhhh-hhhcccee
Confidence            4578999999765          467899999987 88999999999999999999999999999997765 34332221


Q ss_pred             ecccccccCCCCCCceEEEEEEEEecccccCCcccccceeEEeeHhHHhhhh-cccccccc
Q 031268          102 RSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWVSNNHFLWRK-HSNLVGMI  161 (162)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~W~~~~ea~~~~-~~~l~~~v  161 (162)
                      ......     .......++|.+.+..........+..++.|++++++.+++ .++++.++
T Consensus        70 ~~~~~~-----~~~~~~~~~f~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~  125 (130)
T cd03428          70 TLNYQV-----RGKLKTVTYFLAELRPDVEVKLSEEHQDYRWLPYEEALKLLTYEDLKAVL  125 (130)
T ss_pred             EEEccc-----cCcceEEEEEEEEeCCCCccccccceeeEEeecHHHHHHHcCchhHHHHH
Confidence            111000     01123566777776532222222456789999999999985 56666543

Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and

>cd04677 Nudix_Hydrolase_18 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.88  E-value=5.4e-22  Score=138.88  Aligned_cols=125  Identities=18%  Similarity=0.096  Sum_probs=82.0

Q ss_pred             ceeEEEEEEEeccCCcccccccccCceEEEEEEeCCCCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeeeEE
Q 031268           21 LRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWE  100 (162)
Q Consensus        21 ~r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~~~  100 (162)
                      .+..|++++++.+             ++|||++|...+.|.||||++++|||+.+||+||++||||+.+... ..++.+.
T Consensus         6 ~~~~~~~~v~~~~-------------~~vLL~~r~~~~~w~~PgG~v~~gEt~~~aa~REl~EE~Gi~~~~~-~~~~~~~   71 (132)
T cd04677           6 ILVGAGVILLNEQ-------------GEVLLQKRSDTGDWGLPGGAMELGESLEETARRELKEETGLEVEEL-ELLGVYS   71 (132)
T ss_pred             cccceEEEEEeCC-------------CCEEEEEecCCCcEECCeeecCCCCCHHHHHHHHHHHHhCCeeeee-EEEEEec
Confidence            3455666666543             4899999887788999999999999999999999999999998765 3555442


Q ss_pred             eecccccccCCCCCCceEE-EEEEEEecccccCCcccccceeEEeeHhHHhhhhcccccccc
Q 031268          101 FRSKSRMNSCNSKEGGCRG-YMFALEVTEELESWPEQANYKRIWVSNNHFLWRKHSNLVGMI  161 (162)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~-~~f~~~~~~~~~~~~~~~~~~~~W~~~~ea~~~~~~~l~~~v  161 (162)
                      ....... .. ........ ++|...........+..+...++||+++++.+++.+..++|+
T Consensus        72 ~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~e~~~~~~~~~~~~~  131 (132)
T cd04677          72 GKEFYVK-PN-GDDEQYIVTLYYVTKVFGGKLVPDGDETLELKFFSLDELPELINPQHKEML  131 (132)
T ss_pred             CCceeec-CC-CCcEEEEEEEEEEEeccCCcccCCCCceeeEEEEChhHCccchhHHHHHhh
Confidence            1110000 00 01111122 334333332222334445578999999999999888887775

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04684 Nudix_Hydrolase_25 Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function

Probab=99.87  E-value=1.7e-21  Score=135.34  Aligned_cols=118  Identities=19%  Similarity=0.152  Sum_probs=82.4

Q ss_pred             EEEEEEEeccCCcccccccccCceEEEEEEeCCC---CCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeeeEE
Q 031268           24 VAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNR---DDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWE  100 (162)
Q Consensus        24 ~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~~---~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~~~  100 (162)
                      .|.+|+++.              ++|||+++++.   +.|.||||++|+|||+++||+||++||||+.+... ..++.+.
T Consensus         2 ~~~~ii~~~--------------~~vLl~~~~~~~~~~~w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~-~~~~~~~   66 (128)
T cd04684           2 GAYAVIPRD--------------GKLLLIQKNGGPYEGRWDLPGGGIEPGESPEEALHREVLEETGLTVEIG-RRLGSAS   66 (128)
T ss_pred             eeEEEEEeC--------------CEEEEEEccCCCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCcEeecc-eeeeEEE
Confidence            466777764              38999999764   77999999999999999999999999999997765 4677655


Q ss_pred             eecccccccCCCCCCceEEEEEEEEeccccc--CCcccccceeEEeeHhHHhhh-hcccccc
Q 031268          101 FRSKSRMNSCNSKEGGCRGYMFALEVTEELE--SWPEQANYKRIWVSNNHFLWR-KHSNLVG  159 (162)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~--~~~~~~~~~~~W~~~~ea~~~-~~~~l~~  159 (162)
                      +........   .......++|.+.......  ..++.+..+++|++++++.++ +.+..++
T Consensus        67 ~~~~~~~~~---~~~~~~~~~f~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~~~~~~~~~  125 (128)
T cd04684          67 RYFYSPDGD---YDAHHLCVFYDARVVGGALPVQEPGEDSHGAAWLPLDEAIERLLSPLVLW  125 (128)
T ss_pred             EEEECCCCC---eeccEEEEEEEEEEecCccccCCCCCCceeeEEECHHHhhccCCCHHHHH
Confidence            433221100   0112355677776655432  233444578999999999965 5555444

In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability

>cd03430 GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily

Probab=99.87  E-value=3.5e-21  Score=137.48  Aligned_cols=127  Identities=18%  Similarity=0.205  Sum_probs=83.8

Q ss_pred             cCceeEEEEEEEeccCCcccccccccCceEEEEEEeCC---CCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCC-C
Q 031268           19 DQLRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPN---RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDE-N   94 (162)
Q Consensus        19 ~~~r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~---~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~-~   94 (162)
                      .-++.+|++|+++.+             ++|||++|..   .+.|.||||++++|||+++||+||++||||+.+.... .
T Consensus         9 ~~p~v~v~~vI~~~~-------------g~vLl~~R~~~p~~g~w~lPGG~ve~gEs~~~aa~RE~~EE~Gl~v~~~~~~   75 (144)
T cd03430           9 NTPLVSIDLIVENED-------------GQYLLGKRTNRPAQGYWFVPGGRIRKNETLTEAFERIAKDELGLEFLISDAE   75 (144)
T ss_pred             CCCeEEEEEEEEeCC-------------CeEEEEEccCCCCCCcEECCCceecCCCCHHHHHHHHHHHHHCCCcccccce
Confidence            345788989998754             4899999864   4679999999999999999999999999999876441 2


Q ss_pred             CeeeEEeecccccccCCCCCCceEEEEEEEEecccccCCcccccceeEEeeHhHHhhh--hcccccc
Q 031268           95 PLGEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWVSNNHFLWR--KHSNLVG  159 (162)
Q Consensus        95 ~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~W~~~~ea~~~--~~~~l~~  159 (162)
                      .++.+......... ..+...+....+|.+.........+..+..+++|++++++.+.  +++..+.
T Consensus        76 ~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~  141 (144)
T cd03430          76 LLGVFEHFYDDNFF-GDDFSTHYVVLGYVLKLSSNELLLPDEQHSEYQWLTSDELLADDDVHPNTKA  141 (144)
T ss_pred             EEEEEEEEeccccc-cCCCccEEEEEEEEEEEcCCcccCCchhccEeEEecHHHHhcCCCcCHHHHH
Confidence            45555432211100 0011122334556665543322234445679999999999964  5555443

This class of enzymes is unique from other members of the superfamily in two aspects. First, it contains a modified Nudix signature sequence. The slight changes to the conserved sequence motif, GX5EX7REUXEEXGU, where U = I, L or V), are believed to contribute to the removal of all magnesium binding sites but one, retaining only the metal site that coordinates the pyrophosphate of the substrate. Secondly, it is not a pyrophosphatase that substitutes at a phosphorus; instead, it hydrolyzes nucleotide sugars such as GDP-mannose to GDP and mannose, cleaving the phosphoglycosyl bond by substituting at a carbon position. GDP-mannose provides mannosyl components for cell wall synthesis and is required for the synthesis of other glycosyl donors (such as GDP-fucose and colitose) for the cell wall. The importance of GDP-sugar hydrolase activities is thus close

>PRK15434 GDP-mannose mannosyl hydrolase NudD; Provisional

Probab=99.87  E-value=2.5e-21  Score=140.24  Aligned_cols=130  Identities=19%  Similarity=0.202  Sum_probs=84.8

Q ss_pred             ccCceeEEEEEEEeccCCcccccccccCceEEEEEEeCC---CCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccC-C
Q 031268           18 EDQLRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPN---RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLD-E   93 (162)
Q Consensus        18 ~~~~r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~---~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~-~   93 (162)
                      ...+..+|++|+++..             ++|||++|..   .+.|.||||+||+|||+++||+||++||||+.+... .
T Consensus        13 ~~~~~~~v~~vI~~~~-------------g~VLL~kR~~~~~~g~W~lPGG~VE~GEt~~~Aa~REl~EEtGl~v~~~~~   79 (159)
T PRK15434         13 RSTPLISLDFIVENSR-------------GEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAG   79 (159)
T ss_pred             cCCceEEEEEEEECCC-------------CEEEEEEccCCCCCCcEECCceecCCCCCHHHHHHHHHHHHHCCccccccc
Confidence            3455678888887643             5999999864   367999999999999999999999999999986432 1


Q ss_pred             CCeeeEEeecccccccCCCCCCceEEEEEEEEecccccCCcccccceeEEeeHhHHhhh--hcccccccc
Q 031268           94 NPLGEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWVSNNHFLWR--KHSNLVGMI  161 (162)
Q Consensus        94 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~W~~~~ea~~~--~~~~l~~~v  161 (162)
                      .+++.+.+........ .....+....+|.+..........+.++.+++|++++++.+.  +++..+.++
T Consensus        80 ~~~~~~~~~~~~~~~~-~~~~~~~i~~~f~~~~~~g~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~~~  148 (159)
T PRK15434         80 QFYGVWQHFYDDNFSG-TDFTTHYVVLGFRLRVAEEDLLLPDEQHDDYRWLTPDALLASDNVHANSRAYF  148 (159)
T ss_pred             eEEEEEEeecccccCC-CccceEEEEEEEEEEecCCcccCChHHeeEEEEEeHHHhhhccccCHHHHHHh
Confidence            3445443222111000 000112345567776554322333335689999999999874  555555443

>cd04700 DR1025_like DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities

Probab=99.87  E-value=2.8e-21  Score=137.68  Aligned_cols=115  Identities=20%  Similarity=0.104  Sum_probs=82.1

Q ss_pred             ceeEEEEEEEeccCCcccccccccCceEEEEEEeCC---CCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCee
Q 031268           21 LRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPN---RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLG   97 (162)
Q Consensus        21 ~r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~---~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~   97 (162)
                      +..+|++++++.+             ++|||++++.   .+.|+||||++++|||+++||+||++||||+++... ..++
T Consensus        12 ~~~av~~vv~~~~-------------~~vLL~~r~~~~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~-~~~~   77 (142)
T cd04700          12 EARAAGAVILNER-------------NDVLLVQEKGGPKKGLWHIPSGAVEDGEFPQDAAVREACEETGLRVRPV-KFLG   77 (142)
T ss_pred             eeeeEEEEEEeCC-------------CcEEEEEEcCCCCCCeEECCceecCCCCCHHHHHHHHHHHhhCceeecc-EEEE
Confidence            4578888888754             3799998764   356999999999999999999999999999998766 4666


Q ss_pred             eEEeecccccccCCCCCCceEEEEEEEEecccc-cCCcccccceeEEeeHhHHhhhhcccc
Q 031268           98 EWEFRSKSRMNSCNSKEGGCRGYMFALEVTEEL-ESWPEQANYKRIWVSNNHFLWRKHSNL  157 (162)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~-~~~~~~~~~~~~W~~~~ea~~~~~~~l  157 (162)
                      .+.+.....        .....++|.+...... ......+..+++||+++++.+++.++-
T Consensus        78 ~~~~~~~~~--------~~~~~~~f~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~g~  130 (142)
T cd04700          78 TYLGRFDDG--------VLVLRHVWLAEPEGQTLAPKFTDEIAEASFFSREDVAQLYAQGQ  130 (142)
T ss_pred             EEEEEcCCC--------cEEEEEEEEEEecCCccccCCCCCEEEEEEECHHHhhhcccccc
Confidence            654332211        1123466777654321 112234567899999999999876543

Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is us

>cd03674 Nudix_Hydrolase_1 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.87  E-value=2.9e-21  Score=136.84  Aligned_cols=124  Identities=16%  Similarity=0.141  Sum_probs=79.4

Q ss_pred             eeEEEEEEEeccCCcccccccccCceEEEEEEeCCCCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCee----
Q 031268           22 RLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLG----   97 (162)
Q Consensus        22 r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~----   97 (162)
                      +++|++++++.+            .++|||++++..+.|.+|||++|+|||+++||.||++||||+.+... ...+    
T Consensus         2 ~~~~~~~v~~~~------------~~~vLLv~r~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~-~~~~~~~~   68 (138)
T cd03674           2 HFTASAFVVNPD------------RGKVLLTHHRKLGSWLQPGGHIDPDESLLEAALRELREETGIELLGL-RPLSVLVD   68 (138)
T ss_pred             cEEEEEEEEeCC------------CCeEEEEEEcCCCcEECCceecCCCCCHHHHHHHHHHHHHCCCcccc-eecccccc
Confidence            567888888764            25999999988888999999999999999999999999999986543 2222    


Q ss_pred             --eEEeecccccccCCCCCCceEEEEEEEEecccccC-CcccccceeEEeeHhHHhhh-hcccccccc
Q 031268           98 --EWEFRSKSRMNSCNSKEGGCRGYMFALEVTEELES-WPEQANYKRIWVSNNHFLWR-KHSNLVGMI  161 (162)
Q Consensus        98 --~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~-~~~~~~~~~~W~~~~ea~~~-~~~~l~~~v  161 (162)
                        .+.........   .....+...+|.+........ .++.+..+++|++++++..+ +.+..+++|
T Consensus        69 ~~~~~~~~~~~~~---~~~~~~~~~~y~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~i  133 (138)
T cd03674          69 LDVHPIDGHPKRG---VPGHLHLDLRFLAVAPADDVAPPKSDESDAVRWFPLDELASLELPEDVRRLV  133 (138)
T ss_pred             ceeEeecCCCCCC---CCCcEEEEEEEEEEccCccccCCCCCcccccEEEcHHHhhhccCCHHHHHHH
Confidence              11111110000   001112234566654332222 13445578999999999765 445554443

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamil

>cd04695 Nudix_Hydrolase_36 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.87  E-value=1.9e-21  Score=136.50  Aligned_cols=115  Identities=18%  Similarity=0.066  Sum_probs=77.8

Q ss_pred             EEEEEEeccCCcccccccccCceEEEEEEeCC--CCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeee--EE
Q 031268           25 AGCIPYKFEKNDENKNCKMEKKVLVLMISTPN--RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGE--WE  100 (162)
Q Consensus        25 v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~--~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~--~~  100 (162)
                      +|+|+++..+          ++++|||++|..  .+.|.+|||++++|||+.+||+||++||||+++... ...+.  ..
T Consensus         2 ~~~v~~~~~~----------~~~~vLl~~r~~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~-~~~~~~~~~   70 (131)
T cd04695           2 VSGVLLRSLD----------KETKVLLLKRVKTLGGFWCHVAGGVEAGETAWQAALRELKEETGISLPEL-YNADYLEQF   70 (131)
T ss_pred             ceEEEEEEcC----------CCCEEEEEEecCCCCCcEECCcccccCCCCHHHHHHHHHHHHhCCCcccc-ccccceeeE
Confidence            6778877654          357999999987  678999999999999999999999999999987533 11111  11


Q ss_pred             eecccccccCCCCCCceEEEEEEEEecccccCCcccccceeEEeeHhHHhhhh-ccccc
Q 031268          101 FRSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWVSNNHFLWRK-HSNLV  158 (162)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~W~~~~ea~~~~-~~~l~  158 (162)
                      |....        .......+|.+.........++.+..+++|++++++.++. .++.+
T Consensus        71 ~~~~~--------~~~~~~~~f~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~  121 (131)
T cd04695          71 YEAND--------NRILMAPVFVGFVPPHQEVVLNHEHTEYRWCSFAEALELAPFPGQR  121 (131)
T ss_pred             eecCC--------ceEEEEEEEEEEecCCCccccCchhcccEecCHHHHHHhcCChhHH
Confidence            22111        1122345566655432222234456889999999999874 34443

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04689 Nudix_Hydrolase_30 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.87  E-value=3.3e-21  Score=134.01  Aligned_cols=118  Identities=22%  Similarity=0.144  Sum_probs=80.1

Q ss_pred             eeEEEEEEEeccCCcccccccccCceEEEEEEeCCCCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeeeEEe
Q 031268           22 RLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEF  101 (162)
Q Consensus        22 r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~~~~  101 (162)
                      +++|++|+++.              ++|||+++...+.|.+|||++|+|||+.+||+||++||||+.+... ..++.+.+
T Consensus         1 ~~~~~~vi~~~--------------~~vLlv~~~~~~~~~lPGG~ve~gEt~~~aa~REl~EEtGl~~~~~-~~l~~~~~   65 (125)
T cd04689           1 HLRARAIVRAG--------------NKVLLARVIGQPHYFLPGGHVEPGETAENALRRELQEELGVAVSDG-RFLGAIEN   65 (125)
T ss_pred             CeEEEEEEEeC--------------CEEEEEEecCCCCEECCCCcCCCCCCHHHHHHHHHHHHhCceeecc-EEEEEEee
Confidence            46788888853              3899999987788999999999999999999999999999998765 56666543


Q ss_pred             ecccccccCCCCCCceEEEEEEEEecccc---cCCcccccceeEEeeHhHHhhhhccccccc
Q 031268          102 RSKSRMNSCNSKEGGCRGYMFALEVTEEL---ESWPEQANYKRIWVSNNHFLWRKHSNLVGM  160 (162)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~---~~~~~~~~~~~~W~~~~ea~~~~~~~l~~~  160 (162)
                      ......     .......++|.+......   ....+.+..+++|++++++. .....|.++
T Consensus        66 ~~~~~~-----~~~~~~~~~f~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~-~~p~~l~~~  121 (125)
T cd04689          66 QWHEKG-----VRTHEINHIFAVESSWLASDGPPQADEDHLSFSWVPVSDLS-LYPALLRDL  121 (125)
T ss_pred             eeccCC-----ceEEEEEEEEEEEcccccccCCccCccceEEEEEccHHHcc-cCcHHHHHH
Confidence            322111     111223466766654321   11223335789999999954 334444433

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate sp

>cd03671 Ap4A_hydrolase_plant_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily

Probab=99.87  E-value=4.1e-21  Score=137.45  Aligned_cols=124  Identities=18%  Similarity=0.181  Sum_probs=81.7

Q ss_pred             ceeEEEEEEEeccCCcccccccccCceEEEEEEeCCC-CCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeeeE
Q 031268           21 LRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNR-DDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEW   99 (162)
Q Consensus        21 ~r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~~-~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~~   99 (162)
                      +|.+|++|+++.+             ++|||++|... +.|.+|||++|+|||+.+||+||++||||+.+... ..++..
T Consensus         2 ~~~~v~~ii~~~~-------------~~vLL~~r~~~~~~W~~PgG~~e~gE~~~~aA~REv~EEtGl~~~~~-~~l~~~   67 (147)
T cd03671           2 YRPNVGVVLFNED-------------GKVFVGRRIDTPGAWQFPQGGIDEGEDPEQAALRELEEETGLDPDSV-EIIAEI   67 (147)
T ss_pred             CCceEEEEEEeCC-------------CEEEEEEEcCCCCCEECCcCCCCCCcCHHHHHHHHHHHHHCCCcCce-EEEEEc
Confidence            5678999998754             48999999776 48999999999999999999999999999997544 344432


Q ss_pred             ----Eeecccc--cccCCCCCCceEEEEEEEEecc---cccCCc--ccccceeEEeeHhHHhhhhccccc
Q 031268          100 ----EFRSKSR--MNSCNSKEGGCRGYMFALEVTE---ELESWP--EQANYKRIWVSNNHFLWRKHSNLV  158 (162)
Q Consensus       100 ----~~~~~~~--~~~~~~~~~~~~~~~f~~~~~~---~~~~~~--~~~~~~~~W~~~~ea~~~~~~~l~  158 (162)
                          .|.....  .....+.......++|.+.+..   .....+  +.+..+++|++++++.+++.+..+
T Consensus        68 ~~~~~y~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~E~~~~~W~~~~el~~~~~~~~~  137 (147)
T cd03671          68 PDWLRYDLPPELKLKIWGGRYRGQEQKWFLFRFTGDDSEIDLNAPEHPEFDEWRWVPLEELPDLIVPFKR  137 (147)
T ss_pred             CCeeEeeChhhhhccccCCcCCCEEEEEEEEEecCCCccccCCCCCCCCEeeEEeCCHHHHHHhchhhhH
Confidence                2222110  0000000011234556555543   111112  345689999999999998765443

Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally

>cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.86  E-value=5.1e-21  Score=133.16  Aligned_cols=117  Identities=22%  Similarity=0.138  Sum_probs=77.4

Q ss_pred             eEEEEEEEeccCCcccccccccCceEEEEEEeCC-CCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeeeEEe
Q 031268           23 LVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPN-RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEF  101 (162)
Q Consensus        23 ~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~-~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~~~~  101 (162)
                      .+|++++++.+             ++|||+++.. .+.|.||||++++|||+++||+||++||||+++... ..++...+
T Consensus         3 ~~v~~~i~~~~-------------~~iLL~r~~~~~~~w~lPGG~ve~gEs~~~aa~REl~EEtGl~~~~~-~~~~~~~~   68 (125)
T cd04696           3 VTVGALIYAPD-------------GRILLVRTTKWRGLWGVPGGKVEWGETLEEALKREFREETGLKLRDI-KFAMVQEA   68 (125)
T ss_pred             cEEEEEEECCC-------------CCEEEEEccCCCCcEeCCceeccCCCCHHHHHHHHHHHHhCCccccc-ceEEEEEE
Confidence            46778888744             3899998753 578999999999999999999999999999987655 34444333


Q ss_pred             ecccccccCCCCCCceEEEEEEEEecccccCCcccccceeEEeeHhHHhhh-hccccc
Q 031268          102 RSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWVSNNHFLWR-KHSNLV  158 (162)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~W~~~~ea~~~-~~~~l~  158 (162)
                      .......    .......+.|.+..... ....+.+..+++||+++++.++ +.+...
T Consensus        69 ~~~~~~~----~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~W~~~~el~~~~~~~~~~  121 (125)
T cd04696          69 IFSEEFH----KPAHFVLFDFFARTDGT-EVTPNEEIVEWEWVTPEEALDYPLNSFTR  121 (125)
T ss_pred             eccCCCC----CccEEEEEEEEEEecCC-cccCCcccceeEEECHHHHhcCCCCHHHH
Confidence            2211100    11122334455554432 1223345688999999999887 444333

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03672 Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex

Probab=99.86  E-value=5.5e-21  Score=136.67  Aligned_cols=110  Identities=21%  Similarity=0.212  Sum_probs=74.8

Q ss_pred             EEEEEEEeccCCcccccccccCceEEEEEEeCCCCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeeeEEeec
Q 031268           24 VAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRS  103 (162)
Q Consensus        24 ~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~~~~~~  103 (162)
                      ++|+|+++.++            ++|||+++...+.|+||||++|+|||+.+||+||++||||+.+... .....|  ..
T Consensus         3 ~~gaii~~~~~------------~~vLLvr~~~~~~W~lPGG~ve~gEs~~~AA~REl~EETGl~v~~~-~~~~~~--~~   67 (145)
T cd03672           3 VYGAIILNEDL------------DKVLLVKGWKSKSWSFPKGKINKDEDDHDCAIREVYEETGFDISKY-IDKDDY--IE   67 (145)
T ss_pred             eeEEEEEeCCC------------CEEEEEEecCCCCEECCCccCCCCcCHHHHHHHHHHHhhCccceec-ccccee--ee
Confidence            68899998642            4899999877778999999999999999999999999999987643 111222  11


Q ss_pred             ccccccCCCCCCceEEEEEEEE-eccccc--CCcccccceeEEeeHhHHhhhhccc
Q 031268          104 KSRMNSCNSKEGGCRGYMFALE-VTEELE--SWPEQANYKRIWVSNNHFLWRKHSN  156 (162)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~f~~~-~~~~~~--~~~~~~~~~~~W~~~~ea~~~~~~~  156 (162)
                      ....        ....++|.+. ......  ..++.+..+++||+++++.+++...
T Consensus        68 ~~~~--------~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~~  115 (145)
T cd03672          68 LIIR--------GQNVKLYIVPGVPEDTPFEPKTRKEISKIEWFDIKDLPTKKNKK  115 (145)
T ss_pred             cccC--------CcEEEEEEEecCCCCcccCcCChhhhheEEEeeHHHhhhhhhhc
Confidence            1100        1133444443 222111  1223456799999999999886554

Decapping is a key step in both general and nonsense-mediated 5'-3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V).

>PRK09438 nudB dihydroneopterin triphosphate pyrophosphatase; Provisional

Probab=99.86  E-value=3.3e-21  Score=137.93  Aligned_cols=125  Identities=19%  Similarity=0.179  Sum_probs=79.6

Q ss_pred             ceeEEEEEEEeccCCcccccccccCceEEEEEEeCC-CCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCC-CCee-
Q 031268           21 LRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPN-RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDE-NPLG-   97 (162)
Q Consensus        21 ~r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~-~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~-~~l~-   97 (162)
                      .+.+|++|+++.+             ++|||++|.. .+.|.+|||++|+|||+.+||+||++||||+.+.... ..++ 
T Consensus         6 ~~~~v~~vi~~~~-------------~~vLl~~r~~~~~~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~   72 (148)
T PRK09438          6 RPVSVLVVIYTPD-------------LGVLMLQRADDPDFWQSVTGSLEEGETPAQTAIREVKEETGIDVLAEQLTLIDC   72 (148)
T ss_pred             CceEEEEEEEeCC-------------CeEEEEEecCCCCcEeCCcccCCCCCCHHHHHHHHHHHHhCcCccccceeeccc
Confidence            3567888888764             3799998865 4679999999999999999999999999999873221 1111 


Q ss_pred             ----eEEeecccccccCCCCCCceEEEEEEEEecccccCCcccccceeEEeeHhHHhhh-hccccccc
Q 031268           98 ----EWEFRSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWVSNNHFLWR-KHSNLVGM  160 (162)
Q Consensus        98 ----~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~W~~~~ea~~~-~~~~l~~~  160 (162)
                          .|.+....... +.........++|.+.........++ +..+++|++++++.++ ..++.+++
T Consensus        73 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~f~~~~~~~~~~~~~-E~~~~~W~~~~e~~~~~~~~~~~~~  138 (148)
T PRK09438         73 QRSIEYEIFPHWRHR-YAPGVTRNTEHWFCLALPHERPVVLT-EHLAYQWLDAREAAALTKSWSNAEA  138 (148)
T ss_pred             ccccccccchhhhhc-cccccCCceeEEEEEecCCCCccccC-cccceeeCCHHHHHHHhcChhHHHH
Confidence                11111000000 00011123557777765443222223 5689999999999997 45555544

>PLN02325 nudix hydrolase

Probab=99.86  E-value=5.3e-21  Score=136.60  Aligned_cols=122  Identities=16%  Similarity=0.067  Sum_probs=82.4

Q ss_pred             cCceeEEEEEEEeccCCcccccccccCceEEEEEEeCC---CCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCC
Q 031268           19 DQLRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPN---RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENP   95 (162)
Q Consensus        19 ~~~r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~---~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~   95 (162)
                      ..++..|++++++.              ++|||++|..   .+.|.+|||+++.|||+.+||+||++||||+++... ..
T Consensus         6 ~~p~~~v~~vi~~~--------------~~vLL~rr~~~~~~g~W~lPGG~ve~gEs~~~aa~REv~EEtGl~v~~~-~~   70 (144)
T PLN02325          6 PIPRVAVVVFLLKG--------------NSVLLGRRRSSIGDSTFALPGGHLEFGESFEECAAREVKEETGLEIEKI-EL   70 (144)
T ss_pred             CCCeEEEEEEEEcC--------------CEEEEEEecCCCCCCeEECCceeCCCCCCHHHHHHHHHHHHHCCCCcce-EE
Confidence            34567777777763              3899999875   467999999999999999999999999999998766 46


Q ss_pred             eeeEEeecccccccCCCCCCceEEEEEEEEeccccc---CCcccccceeEEeeHhHHhhhhccccccc
Q 031268           96 LGEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEELE---SWPEQANYKRIWVSNNHFLWRKHSNLVGM  160 (162)
Q Consensus        96 l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~---~~~~~~~~~~~W~~~~ea~~~~~~~l~~~  160 (162)
                      ++.+++......     ...+....+|.+...+...   ....++..+++||+++++...+...++.+
T Consensus        71 l~~~~~~~~~~~-----~~~~~i~~~f~~~~~~~~~~~~~~e~~e~~~~~W~~~d~Lp~~~~~p~~~~  133 (144)
T PLN02325         71 LTVTNNVFLEEP-----KPSHYVTVFMRAVLADPSQVPQNLEPEKCYGWDWYEWDNLPEPLFWPLEKL  133 (144)
T ss_pred             EEEecceeecCC-----CCcEEEEEEEEEEECCCCCCCCcCCchhcCceEEEChHHCChhhhHHHHHH
Confidence            666543221111     1122344556665433211   11122236789999999998766555544

>cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.86  E-value=1.3e-20  Score=129.95  Aligned_cols=105  Identities=21%  Similarity=0.164  Sum_probs=72.0

Q ss_pred             EEEEEEeCC---CCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeeeEEeecccccccCCCCCCceEEEEEEE
Q 031268           48 LVLMISTPN---RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMFAL  124 (162)
Q Consensus        48 ~vLLv~r~~---~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~  124 (162)
                      +|||+++.+   .+.|.||||++++|||+++||.||++||||+.+... ..++.+.+.......   ........++|.+
T Consensus        12 ~vLl~~r~~~~~~~~w~~PgG~ie~gE~~~~aa~RE~~EEtGl~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~   87 (122)
T cd04673          12 RVLLVRRANPPDAGLWSFPGGKVELGETLEQAALRELLEETGLEAEVG-RLLTVVDVIERDAAG---RVEFHYVLIDFLC   87 (122)
T ss_pred             EEEEEEEcCCCCCCeEECCCcccCCCCCHHHHHHHHHHHhhCcEeeec-eeEEEEEEeeccCCC---ccceEEEEEEEEE
Confidence            799999864   356999999999999999999999999999998766 466766544322100   0111223445655


Q ss_pred             EecccccCCcccccceeEEeeHhHHhhh-hcccc
Q 031268          125 EVTEELESWPEQANYKRIWVSNNHFLWR-KHSNL  157 (162)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~W~~~~ea~~~-~~~~l  157 (162)
                      ....... .+..+..+++|++++++.++ +.+++
T Consensus        88 ~~~~~~~-~~~~E~~~~~w~~~~el~~~~~~~~~  120 (122)
T cd04673          88 RYLGGEP-VAGDDALDARWVPLDELAALSLTEST  120 (122)
T ss_pred             EeCCCcc-cCCcccceeEEECHHHHhhCcCCccc
Confidence            5443222 23345578999999999987 44443

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04687 Nudix_Hydrolase_28 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.86  E-value=2e-20  Score=130.60  Aligned_cols=115  Identities=23%  Similarity=0.188  Sum_probs=77.9

Q ss_pred             eeEEEEEEEeccCCcccccccccCceEEEEEEeCCC--CCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeeeE
Q 031268           22 RLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNR--DDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEW   99 (162)
Q Consensus        22 r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~~--~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~~   99 (162)
                      |.+|++|+++.              ++|||+++.+.  +.|.+|||++++|||+++||+||++||||+.+... ..+..+
T Consensus         1 r~~a~~iv~~~--------------~~vLl~~r~~~~~~~~~lPGG~ve~gEt~~~aa~RE~~EEtGl~v~~~-~~~~~~   65 (128)
T cd04687           1 RNSAKAVIIKN--------------DKILLIKHHDDGGVWYILPGGGQEPGETLEDAAHRECKEEIGIDVEIG-PLLFVR   65 (128)
T ss_pred             CcEEEEEEEEC--------------CEEEEEEEEcCCCCeEECCCcccCCCCCHHHHHHHHHHHHHCCccccC-cEEEEE
Confidence            56788888863              38999998543  45999999999999999999999999999998765 355555


Q ss_pred             EeecccccccCCCCCCceEEEEEEEEeccccc----CCcccccceeEEeeHhHHhhh
Q 031268          100 EFRSKSRMNSCNSKEGGCRGYMFALEVTEELE----SWPEQANYKRIWVSNNHFLWR  152 (162)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~----~~~~~~~~~~~W~~~~ea~~~  152 (162)
                      .+...... .......+...++|.+.......    ..++.+...++|++++++.++
T Consensus        66 ~~~~~~~~-~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~l~~~  121 (128)
T cd04687          66 EYIGHNPT-SELPGHFHQVELMFECKIKSGTPAKTPSKPDPNQIGVEWLKLKELGDI  121 (128)
T ss_pred             EEeccCcc-ccCCCceeEEEEEEEEEECCCCcccccCCCCCCEEeeEEEcHHHhCcc
Confidence            44322100 00011223345677776644221    122333468999999999887

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.85  E-value=8.6e-21  Score=132.53  Aligned_cols=119  Identities=18%  Similarity=0.071  Sum_probs=81.9

Q ss_pred             ceeEEEEEEEeccCCcccccccccCceEEEEEEeC---CCCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCee
Q 031268           21 LRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTP---NRDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLG   97 (162)
Q Consensus        21 ~r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~---~~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~   97 (162)
                      +|.+|++|+++.+             ++|||++|.   ..+.|.+|||++++|||+++||.||++||||+++... ..++
T Consensus         1 p~~~v~~ii~~~~-------------~~iLl~~r~~~~~~~~w~~PGG~ve~gEt~~~Aa~REl~EE~Gl~~~~~-~~~~   66 (129)
T cd04678           1 PRVGVGVFVLNPK-------------GKVLLGKRKGSHGAGTWALPGGHLEFGESFEECAAREVLEETGLHIENV-QFLT   66 (129)
T ss_pred             CceEEEEEEECCC-------------CeEEEEeccCCCCCCeEECCcccccCCCCHHHHHHHHHHHHhCCcccce-EEEE
Confidence            4678889999864             489999987   3577999999999999999999999999999997655 3555


Q ss_pred             eEEeecccccccCCCCCCceEEEEEEEEecccccCC---cccccceeEEeeHhHHhhh--hccccccc
Q 031268           98 EWEFRSKSRMNSCNSKEGGCRGYMFALEVTEELESW---PEQANYKRIWVSNNHFLWR--KHSNLVGM  160 (162)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~---~~~~~~~~~W~~~~ea~~~--~~~~l~~~  160 (162)
                      .+......       ........+|.+.........   ..++..+++|++++++.++  ....++++
T Consensus        67 ~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~~~~~~~~~~~  127 (129)
T cd04678          67 VTNDVFEE-------EGKHYVTIFVKAEVDDGEAEPNKMEPEKCEGWEWFDWEELPSVDPLFLPLKNL  127 (129)
T ss_pred             EEeEEeCC-------CCcEEEEEEEEEEeCCCCcccCCCCCceeCceEEeCHHHCCCcchhhHHHHHH
Confidence            54322211       111234456666655432211   1223467899999999985  34444444

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04667 Nudix_Hydrolase_10 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.85  E-value=1.1e-20  Score=129.23  Aligned_cols=99  Identities=24%  Similarity=0.224  Sum_probs=71.0

Q ss_pred             eEEEEEEeCCCCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeeeEEeecccccccCCCCCCceEEEEEEEEe
Q 031268           47 VLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMFALEV  126 (162)
Q Consensus        47 ~~vLLv~r~~~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~  126 (162)
                      ++|||+++.. +.|.||||++++|||+.+||.||++||||+..... ..++.+.  ..           ....++|.+.+
T Consensus        11 ~~vLlv~r~~-~~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~-~~~~~~~--~~-----------~~~~~~f~~~~   75 (112)
T cd04667          11 GRVLLVRKSG-SRWALPGGKIEPGETPLQAARRELQEETGLQGLDL-LYLFHVD--GG-----------STRHHVFVASV   75 (112)
T ss_pred             CEEEEEEcCC-CcEeCCCCcCCCCCCHHHHHHHHHHHHhCCcccce-EEEEEEe--CC-----------CEEEEEEEEEc
Confidence            3899998864 78999999999999999999999999999986544 3444432  11           11345666665


Q ss_pred             cccccCCcccccceeEEeeHhHHhhhhccccccc
Q 031268          127 TEELESWPEQANYKRIWVSNNHFLWRKHSNLVGM  160 (162)
Q Consensus       127 ~~~~~~~~~~~~~~~~W~~~~ea~~~~~~~l~~~  160 (162)
                      .......+..+..+++|++++++.++..+...+.
T Consensus        76 ~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~  109 (112)
T cd04667          76 PPSAQPKPSNEIADCRWLSLDALGDLNASAATRL  109 (112)
T ss_pred             CCcCCCCCchheeEEEEecHHHhhhcccchhhhh
Confidence            5432233444557899999999999865554443

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04688 Nudix_Hydrolase_29 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.85  E-value=2.7e-20  Score=129.58  Aligned_cols=110  Identities=22%  Similarity=0.163  Sum_probs=78.8

Q ss_pred             eEEEEEEEeccCCcccccccccCceEEEEEEeCCCCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeeeEEee
Q 031268           23 LVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFR  102 (162)
Q Consensus        23 ~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~~~~~  102 (162)
                      +.|.+|++++              ++|||+++...+.|.||||++++|||+.+||.||++||||+.+... ..++.+...
T Consensus         2 ~~v~~vi~~~--------------~~vLl~~~~~~~~w~lPgG~ve~gEs~~~aa~RE~~EEtGl~~~~~-~~~~~~~~~   66 (126)
T cd04688           2 VRAAAIIIHN--------------GKLLVQKNPDETFYRPPGGGIEFGESSEEALIREFKEELGLKIEIT-RLLGVVENI   66 (126)
T ss_pred             eEEEEEEEEC--------------CEEEEEEeCCCCeEECCCccccCCCCHHHHHHHHHHHHhCCceecc-eeeEEEEEe
Confidence            3566777764              2899998877778999999999999999999999999999998766 466665432


Q ss_pred             cccccccCCCCCCceEEEEEEEEecccccCC-------cccccceeEEeeHhHHhhh
Q 031268          103 SKSRMNSCNSKEGGCRGYMFALEVTEELESW-------PEQANYKRIWVSNNHFLWR  152 (162)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~-------~~~~~~~~~W~~~~ea~~~  152 (162)
                      .....     .......++|.+...+.....       ++.+..++.|++++++..+
T Consensus        67 ~~~~~-----~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~  118 (126)
T cd04688          67 FTYNG-----KPGHEIEFYYLVTLLDESLYQQDIEILEEEGEKIVFRWIPIDELKEI  118 (126)
T ss_pred             eccCC-----cccEEEEEEEEEEeCCCcccccccceeccCCCEEEEEEeeHHHcccC
Confidence            21111     112234677887765543221       2344578999999999865

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04672 Nudix_Hydrolase_14 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.85  E-value=1.8e-20  Score=130.13  Aligned_cols=113  Identities=11%  Similarity=0.024  Sum_probs=77.6

Q ss_pred             ceeEEEEEEEeccCCcccccccccCceEEEEEEeCCCCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeeeEE
Q 031268           21 LRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWE  100 (162)
Q Consensus        21 ~r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~~~  100 (162)
                      +++.|++++++.              ++|||++++..+.|.||||++++|||+.+||+||++||||+.+... ..++.+.
T Consensus         1 p~~~v~~~i~~~--------------~~vLL~~~~~~~~w~~PGG~ve~gEs~~~aa~REl~EEtG~~~~~~-~~~~~~~   65 (123)
T cd04672           1 PKVDVRAAIFKD--------------GKILLVREKSDGLWSLPGGWADVGLSPAENVVKEVKEETGLDVKVR-KLAAVDD   65 (123)
T ss_pred             CcceEEEEEEEC--------------CEEEEEEEcCCCcEeCCccccCCCCCHHHHHHHHHHHHhCCeeeEe-EEEEEec
Confidence            356788888864              3899999988888999999999999999999999999999987544 3455443


Q ss_pred             eecccccccCCCCCCceEEEEEEEEecccccCCcccccceeEEeeHhHHhhhh
Q 031268          101 FRSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWVSNNHFLWRK  153 (162)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~W~~~~ea~~~~  153 (162)
                      .......    +........+|.+........ +..+..+++|++++++.++.
T Consensus        66 ~~~~~~~----~~~~~~~~~~f~~~~~~~~~~-~~~E~~~~~W~~~~el~~l~  113 (123)
T cd04672          66 RNKHHPP----PQPYQVYKLFFLCEILGGEFK-PNIETSEVGFFALDDLPPLS  113 (123)
T ss_pred             cccccCC----CCceEEEEEEEEEEecCCccc-CCCceeeeEEECHHHCcccc
Confidence            2211110    001112234566665432222 23445789999999998874

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.85  E-value=1.5e-20  Score=129.20  Aligned_cols=97  Identities=24%  Similarity=0.218  Sum_probs=70.7

Q ss_pred             eEEEEEEeCCCCCeeeCCCccCCCCCHHHHHHHHHHHHhCccccc--CCCCeeeEEeecccccccCCCCCCceEEEEEEE
Q 031268           47 VLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVRGLL--DENPLGEWEFRSKSRMNSCNSKEGGCRGYMFAL  124 (162)
Q Consensus        47 ~~vLLv~r~~~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~  124 (162)
                      +++||++++..+.|.||||++++|||+++||+||++||||+.+..  . ..++.+.+......      ......++|.+
T Consensus        12 ~~vLl~~r~~~~~w~~PgG~ve~~Es~~~aa~REl~EEtGl~~~~~~~-~~~~~~~~~~~~~~------~~~~~~~~f~~   84 (118)
T cd04690          12 GRVLLVRKRGTDVFYLPGGKIEAGETPLQALIRELSEELGLDLDPDSL-EYLGTFRAPAANEP------GVDVRATVYVA   84 (118)
T ss_pred             CeEEEEEECCCCcEECCCCccCCCCCHHHHHHHHHHHHHCCccChhhe-EEEEEEecccccCC------CcEEEEEEEEE
Confidence            489999998888899999999999999999999999999998765  4 45666554322111      11235567777


Q ss_pred             EecccccCCcccccceeEEeeHhHHhhh
Q 031268          125 EVTEELESWPEQANYKRIWVSNNHFLWR  152 (162)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~W~~~~ea~~~  152 (162)
                      ....  ...+..+..+++|++++++...
T Consensus        85 ~~~~--~~~~~~e~~~~~W~~~~e~~~~  110 (118)
T cd04690          85 ELTG--EPVPAAEIEEIRWVDYDDPADD  110 (118)
T ss_pred             cccC--CcCCCchhhccEEecHHHcccc
Confidence            6554  2223345578999999998654

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03675 Nudix_Hydrolase_2 Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function

Probab=99.85  E-value=3.8e-20  Score=130.04  Aligned_cols=99  Identities=23%  Similarity=0.282  Sum_probs=71.1

Q ss_pred             eEEEEEEeCCC--CCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeeeEEeecccccccCCCCCCceEEEEEEE
Q 031268           47 VLVLMISTPNR--DDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMFAL  124 (162)
Q Consensus        47 ~~vLLv~r~~~--~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~  124 (162)
                      +++||++|.+.  +.|.||||++++|||+.+||.||++||||+.+... ..++.+.+.....       ...+..++|.+
T Consensus        11 ~~vLlv~r~~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~-~~~~~~~~~~~~~-------~~~~~~~~f~~   82 (134)
T cd03675          11 GRFLLVEEETDGGLVFNQPAGHLEPGESLIEAAVRETLEETGWHVEPT-ALLGIYQWTAPDS-------DTTYLRFAFAA   82 (134)
T ss_pred             CEEEEEEEccCCCceEECCCccCCCCCCHHHHHHHHHHHHHCcccccc-eEEEEEEeecCCC-------CeeEEEEEEEE
Confidence            38999998753  46999999999999999999999999999998655 4566665543221       11223456666


Q ss_pred             EecccccC-CcccccceeEEeeHhHHhhhh
Q 031268          125 EVTEELES-WPEQANYKRIWVSNNHFLWRK  153 (162)
Q Consensus       125 ~~~~~~~~-~~~~~~~~~~W~~~~ea~~~~  153 (162)
                      .+...... ..+.+..++.|++++++.++.
T Consensus        83 ~~~~~~~~~~~~~e~~~~~w~~~~el~~~~  112 (134)
T cd03675          83 ELLEHLPDQPLDSGIVRAHWLTLEEILALA  112 (134)
T ss_pred             EECCCCCCCCCCCCceeeEEEeHHHHHhhh
Confidence            66543222 223345789999999999875

In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability,

>cd04664 Nudix_Hydrolase_7 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.85  E-value=1.8e-20  Score=131.00  Aligned_cols=122  Identities=18%  Similarity=0.093  Sum_probs=81.4

Q ss_pred             EEEEEEEeccCCcccccccccCceEEEEEEeCC--CCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeeeEEe
Q 031268           24 VAGCIPYKFEKNDENKNCKMEKKVLVLMISTPN--RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEF  101 (162)
Q Consensus        24 ~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~--~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~~~~  101 (162)
                      +|.+++++..+           +++|||++|..  .+.|.+|||++++|||+.+||+||++||||+.+... ..++.+..
T Consensus         3 ~~~v~~~~~~~-----------~~~vLL~~r~~~~~~~w~~PgG~ve~~Es~~~aa~RE~~EE~Gl~~~~~-~~~~~~~~   70 (129)
T cd04664           3 SVLVVPYRLTG-----------EGRVLLLRRSDKYAGFWQSVTGGIEDGESPAEAARREVAEETGLDPERL-TLLDRGAS   70 (129)
T ss_pred             EEEEEEEEeCC-----------CCEEEEEEeCCCCCCcccccCcccCCCCCHHHHHHHHHHHHHCCChhhe-EEEeeccc
Confidence            46677777632           36999999976  578999999999999999999999999999987443 23333321


Q ss_pred             -ecccccccCCCCCCceEEEEEEEEecccccCCcccccceeEEeeHhHHhhh-hcccccccc
Q 031268          102 -RSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWVSNNHFLWR-KHSNLVGMI  161 (162)
Q Consensus       102 -~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~W~~~~ea~~~-~~~~l~~~v  161 (162)
                       ......    ........++|.+.+........+.+..+++|++++++.++ ..+++++++
T Consensus        71 ~~~~~~~----~~~~~~~~~~f~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~  128 (129)
T cd04664          71 IAFVEFT----DNGRVWTEHPFAFHLPSDAVVTLDWEHDAFEWVPPEEAAALLLWESNRRAW  128 (129)
T ss_pred             ccccccC----CCceEEEEeEEEEEcCCCCcccCCccccccEecCHHHHHHHHcChhhhhhh
Confidence             000000    01122356778777655321223334578999999999987 456665543

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>cd04669 Nudix_Hydrolase_11 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.84  E-value=3.1e-20  Score=128.75  Aligned_cols=102  Identities=25%  Similarity=0.273  Sum_probs=72.1

Q ss_pred             EEEEEEEeccCCcccccccccCceEEEEEEeCCC--CCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeeeEEe
Q 031268           24 VAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNR--DDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEF  101 (162)
Q Consensus        24 ~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~~--~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~~~~  101 (162)
                      .|++|+++.+             ++|||++|.+.  +.|.||||++|+|||+.+||+||++||||+++... ..++.+.+
T Consensus         2 ~~~~ii~~~~-------------~~vLL~~r~~~~~~~w~lPGG~ve~gEs~~~a~~REl~EEtGl~~~~~-~~~~~~~~   67 (121)
T cd04669           2 RASIVIINDQ-------------GEILLIRRIKPGKTYYVFPGGGIEEGETPEEAAKREALEELGLDVRVE-EIFLIVNQ   67 (121)
T ss_pred             ceEEEEEeCC-------------CEEEEEEEecCCCCcEECCceeccCCCCHHHHHHHHHHHhhCeeEeee-eEEEEEee
Confidence            4667777653             48999998643  56999999999999999999999999999998665 45565544


Q ss_pred             ecccccccCCCCCCceEEEEEEEEecccccC--C-------cccccceeEEeeHhHHhhh
Q 031268          102 RSKSRMNSCNSKEGGCRGYMFALEVTEELES--W-------PEQANYKRIWVSNNHFLWR  152 (162)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~--~-------~~~~~~~~~W~~~~ea~~~  152 (162)
                      ..             ...++|.+........  .       .+.+..+++||+++++.++
T Consensus        68 ~~-------------~~~~~f~~~~~~g~~~~~~~~e~~~~~~~~~~~~~Wv~~~el~~l  114 (121)
T cd04669          68 NG-------------RTEHYFLARVISGKLGLGVGEEFERQSDDNQYHPVWVDLDQLETI  114 (121)
T ss_pred             CC-------------cEEEEEEEEEECCeecCCCchhhcccCCCCceEEEEEEHHHcccC
Confidence            11             1345666654321110  0       1222357899999999886

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04676 Nudix_Hydrolase_17 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.84  E-value=2.9e-20  Score=128.94  Aligned_cols=124  Identities=16%  Similarity=0.115  Sum_probs=79.8

Q ss_pred             eeEEEEEEEeccCCcccccccccCceEEEEEEeCCCCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeeeEEe
Q 031268           22 RLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEF  101 (162)
Q Consensus        22 r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~~~~  101 (162)
                      +..|++|+++.+             ++|||++|...+.|.||||++++|||+++||+||++||||+.+... ..++.+..
T Consensus         2 ~~~v~~ii~~~~-------------~~vLl~~r~~~~~w~lPgG~v~~~E~~~~aa~REl~EE~Gl~~~~~-~~~~~~~~   67 (129)
T cd04676           2 LPGVTAVVRDDE-------------GRVLLIRRSDNGLWALPGGAVEPGESPADTAVREVREETGLDVEVT-GLVGIYTG   67 (129)
T ss_pred             cceEEEEEECCC-------------CeEEEEEecCCCcEECCeeccCCCCCHHHHHHHHHHHHhCceeEee-EEEEEeec
Confidence            456777777643             4899999987788999999999999999999999999999987654 34443322


Q ss_pred             ecccccccCCCCCCceEEEEEEEEecccccCCcccccceeEEeeHhHHhhh-hccccccc
Q 031268          102 RSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWVSNNHFLWR-KHSNLVGM  160 (162)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~W~~~~ea~~~-~~~~l~~~  160 (162)
                      ........ .+........+|.+.........+..+..+++|++++++.++ +.+..+.+
T Consensus        68 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~w~~~~el~~~~~~~~~~~~  126 (129)
T cd04676          68 PVHVVTYP-NGDVRQYLDITFRCRVVGGELRVGDDESLDVAWFDPDGLPPLLMHPSMRLR  126 (129)
T ss_pred             ccceeecC-CCCcEEEEEEEEEEEeeCCeecCCCCceeEEEEEChhhCccccCCHhHHHH
Confidence            11100000 000011233445554433222123344578999999999986 55555544

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04670 Nudix_Hydrolase_12 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.84  E-value=3e-20  Score=129.52  Aligned_cols=108  Identities=17%  Similarity=0.225  Sum_probs=72.2

Q ss_pred             eeEEEEEEEeccCCcccccccccCceEEEEEEeCC--CCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeeeE
Q 031268           22 RLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPN--RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEW   99 (162)
Q Consensus        22 r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~--~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~~   99 (162)
                      +..|++++++.+             ++|||++++.  .+.|.||||++++|||+++||+||++||||+.+... ..++.+
T Consensus         2 ~~~~~~~v~~~~-------------~~vLl~~r~~~~~~~w~~PGG~ve~gEt~~~aa~RE~~EE~Gl~~~~~-~~~~~~   67 (127)
T cd04670           2 TVGVGGLVLNEK-------------NEVLVVQERNKTPNGWKLPGGLVDPGEDIFDGAVREVLEETGIDTEFV-SVVGFR   67 (127)
T ss_pred             eeEEEEEEEcCC-------------CeEEEEEccCCCCCcEECCCccCCCCCCHHHHHHHHHHHHHCCCccee-EEEEEE
Confidence            356777888654             4899999877  678999999999999999999999999999987655 334333


Q ss_pred             EeecccccccCCCCCCceEEEEEEEEecccc--cCCcccccceeEEeeHhHHhhh
Q 031268          100 EFRSKSRMNSCNSKEGGCRGYMFALEVTEEL--ESWPEQANYKRIWVSNNHFLWR  152 (162)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~--~~~~~~~~~~~~W~~~~ea~~~  152 (162)
                      .+.....         .....+|.+.+....  ....+++..+++|++++++.+.
T Consensus        68 ~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~  113 (127)
T cd04670          68 HAHPGAF---------GKSDLYFICRLKPLSFDINFDTSEIAAAKWMPLEEYISQ  113 (127)
T ss_pred             ecCCCCc---------CceeEEEEEEEccCcCcCCCChhhhheeEEEcHHHHhcc
Confidence            2211110         012233444332211  1122334568999999999865

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04686 Nudix_Hydrolase_27 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.84  E-value=6.1e-20  Score=129.00  Aligned_cols=113  Identities=24%  Similarity=0.299  Sum_probs=75.2

Q ss_pred             EEEEEEEeccCCcccccccccCceEEEEEEeCCCCCeeeCCCccCCCCCHHHHHHHHHHHHhCccc-ccCCCCeeeEEee
Q 031268           24 VAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVRG-LLDENPLGEWEFR  102 (162)
Q Consensus        24 ~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~-~~~~~~l~~~~~~  102 (162)
                      +|++|+++.              ++|||+++.+.+.|.||||++|+|||+.+||+||++||||+.+ ... ..++.+...
T Consensus         2 ~~~~ii~~~--------------~~vLLv~~~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~-~~l~~~~~~   66 (131)
T cd04686           2 AVRAIILQG--------------DKILLLYTKRYGDYKFPGGGVEKGEDHIEGLIRELQEETGATNIRVI-EKFGTYTER   66 (131)
T ss_pred             cEEEEEEEC--------------CEEEEEEEcCCCcEECccccCCCCCCHHHHHHHHHHHHHCCcccccc-eEEEEEEee
Confidence            577888874              3899999987778999999999999999999999999999986 334 456665421


Q ss_pred             cccccccCCCCCCceEEEEEEEEeccccc--CCcccc---cceeEEeeHhHHhhhh
Q 031268          103 SKSRMNSCNSKEGGCRGYMFALEVTEELE--SWPEQA---NYKRIWVSNNHFLWRK  153 (162)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~~--~~~~~~---~~~~~W~~~~ea~~~~  153 (162)
                      ......  .........++|.+.......  ...+.+   ...++|++++++.+..
T Consensus        67 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~W~~~~ea~~~~  120 (131)
T cd04686          67 RPWRKP--DADIFHMISYYYLCEVDAELGAQQLEDYEAELGMKPIWINIHEAIEHN  120 (131)
T ss_pred             ccccCC--CCceeEEEEEEEEEEEcCCcCCcccchhhHhcCCCcEEecHHHHHHhh
Confidence            111000  001112245677776654321  111111   1358999999998753

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.84  E-value=5.3e-20  Score=129.02  Aligned_cols=115  Identities=17%  Similarity=0.190  Sum_probs=82.0

Q ss_pred             cCceeEEEEEEEeccCCcccccccccCceEEEEEEeC---CCCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCC
Q 031268           19 DQLRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTP---NRDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENP   95 (162)
Q Consensus        19 ~~~r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~---~~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~   95 (162)
                      ..++.+|++|+++.              ++|||++|.   ..+.|.||||++|+|||+++||+||++||||+++... ..
T Consensus        10 ~~~~~~v~~ii~~~--------------~~vLL~kr~~~~~~g~w~lPgG~ve~gE~~~~a~~REl~EEtGl~~~~~-~~   74 (130)
T cd04511          10 QNPKIIVGCVPEWE--------------GKVLLCRRAIEPRHGFWTLPAGFMENGETTEQGALRETWEEAGARVEID-GL   74 (130)
T ss_pred             CCCcEEEEEEEecC--------------CEEEEEEecCCCCCCeEECCcccccCCCCHHHHHHHHHHHHhCCEEEee-eE
Confidence            45567788887754              389999985   3467999999999999999999999999999998655 45


Q ss_pred             eeeEEeecccccccCCCCCCceEEEEEEEEecccccCCcccccceeEEeeHhHHh--hhhccccccc
Q 031268           96 LGEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWVSNNHFL--WRKHSNLVGM  160 (162)
Q Consensus        96 l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~W~~~~ea~--~~~~~~l~~~  160 (162)
                      ++.+.....           ....++|.+...... ..+..+..+.+|++++++.  ++..+.+++.
T Consensus        75 ~~~~~~~~~-----------~~~~~~f~~~~~~~~-~~~~~e~~~~~~~~~~~l~~~~l~~~~~~~~  129 (130)
T cd04511          75 YAVYSVPHI-----------SQVYMFYRARLLDLD-FAPGPESLEVRLFTEEEIPWDELAFPTVRRT  129 (130)
T ss_pred             EEEEecCCc-----------eEEEEEEEEEEcCCc-ccCCcchhceEEECHHHCCchhccccccccc
Confidence            555543211           124567777765432 2233345788999999996  4555655543

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specifici

>cd03424 ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate

Probab=99.83  E-value=6e-20  Score=129.51  Aligned_cols=110  Identities=21%  Similarity=0.105  Sum_probs=77.3

Q ss_pred             eEEEEEEEeccCCcccccccccCceEEEEEEeCC----CCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeee
Q 031268           23 LVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPN----RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGE   98 (162)
Q Consensus        23 ~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~----~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~   98 (162)
                      .+|++++++.+             +++||+++.+    .+.|.+|||++|+|||+.+||+||++||||+.+... ..++.
T Consensus         3 ~~v~v~~~~~~-------------~~iLl~~~~~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~~~~-~~~~~   68 (137)
T cd03424           3 DAVAVLPYDDD-------------GKVVLVRQYRPPVGGWLLELPAGLIDPGEDPEEAARRELEEETGYEAGDL-EKLGS   68 (137)
T ss_pred             CEEEEEEEcCC-------------CeEEEEEeeecCCCCEEEEeCCccCCCCCCHHHHHHHHHHHHHCCCccce-EEEee
Confidence            35777777764             4899998753    246999999999999999999999999999998644 35555


Q ss_pred             EEeecccccccCCCCCCceEEEEEEEEecccc--cCCcccccceeEEeeHhHHhhhhcc
Q 031268           99 WEFRSKSRMNSCNSKEGGCRGYMFALEVTEEL--ESWPEQANYKRIWVSNNHFLWRKHS  155 (162)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~--~~~~~~~~~~~~W~~~~ea~~~~~~  155 (162)
                      +.+....         .....++|.+......  ....+.+..+++|++++|+.+++..
T Consensus        69 ~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~  118 (137)
T cd03424          69 FYPSPGF---------SDERIHLFLAEDLSPGEEGLLDEGEDIEVVLVPLDEALELLAD  118 (137)
T ss_pred             EecCCcc---------cCccEEEEEEEcccccccCCCCCCCeeEEEEecHHHHHHHHHc
Confidence            4332111         1124556666655432  1233445688999999999988654

Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirem

>PF00293 NUDIX: NUDIX domain; InterPro: IPR000086 The generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family []

Probab=99.83  E-value=3.9e-20  Score=128.95  Aligned_cols=114  Identities=26%  Similarity=0.261  Sum_probs=81.8

Q ss_pred             ceeEEEEEEEeccCCcccccccccCceEEEEEEeCCC-----CCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCC
Q 031268           21 LRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNR-----DDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENP   95 (162)
Q Consensus        21 ~r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~~-----~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~   95 (162)
                      +|.+|++|+++.+             ++|||+++.+.     +.|.+|||++++|||+.+||+||++||||+.+... ..
T Consensus         1 ~~~~v~~ii~~~~-------------~~vLl~~r~~~~~~~~~~~~~pgG~i~~~E~~~~aa~REl~EE~g~~~~~~-~~   66 (134)
T PF00293_consen    1 WRRAVGVIIFNED-------------GKVLLIKRSRSPITFPGYWELPGGGIEPGESPEEAARRELKEETGLDVSPL-EL   66 (134)
T ss_dssp             EEEEEEEEEEETT-------------TEEEEEEESTTSSSSTTEEESSEEEECTTSHHHHHHHHHHHHHHSEEEEEE-EE
T ss_pred             CCCEEEEEEEeCC-------------cEEEEEEecCCCCCCCCeEecceeeEEcCCchhhhHHhhhhhcccceeccc-cc
Confidence            4789999999876             29999999865     56999999999999999999999999999997544 34


Q ss_pred             eeeEEeecccccccCCCCCCceEEEEEEEEecccc--cCCcccccceeEEeeHhHHhhhhc
Q 031268           96 LGEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEEL--ESWPEQANYKRIWVSNNHFLWRKH  154 (162)
Q Consensus        96 l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~--~~~~~~~~~~~~W~~~~ea~~~~~  154 (162)
                      ++.+.+.......      .....++|.+......  ......+...++|++++++.++..
T Consensus        67 ~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~  121 (134)
T PF00293_consen   67 LGLFSYPSPSGDP------EGEIVIFFIAELPSEQSEIQPQDEEISEVKWVPPDELLELLL  121 (134)
T ss_dssp             EEEEEEEETTTES------SEEEEEEEEEEEEEEESECHTTTTTEEEEEEEEHHHHHHHHH
T ss_pred             ceeeeecccCCCc------ccEEEEEEEEEEeCCccccCCCCccEEEEEEEEHHHhhhchh
Confidence            5555544432210      1134555555544332  122222568999999999998743

The family can be divided into a number of subgroups, of which MutT anti- mutagenic activity represents only one type; most of the rest hydrolyse diverse nucleoside diphosphate derivatives (including ADP-ribose, GDP- mannose, TDP-glucose, NADH, UDP-sugars, dNTP and NTP).; GO: 0016787 hydrolase activity; PDB: 3FJY_A 3MGM_A 2XSQ_A 3COU_A 2O5F_A 1Q27_A 3F6A_A 3E57_B 3SON_B 2GT4_C ....

>COG1051 ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]

Probab=99.83  E-value=3.5e-20  Score=132.49  Aligned_cols=112  Identities=21%  Similarity=0.211  Sum_probs=79.8

Q ss_pred             cCceeEEEEEEEeccCCcccccccccCceEEEEEEeCCC---CCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCC
Q 031268           19 DQLRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNR---DDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENP   95 (162)
Q Consensus        19 ~~~r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~~---~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~   95 (162)
                      ..+...|++++.+.+              +|||++|...   +.|.||||++|.|||+++||.||++||||+++... .+
T Consensus         7 ~~p~~~v~~~i~~~~--------------~iLLvrR~~~p~~g~WalPGG~ve~GEt~eeaa~REl~EETgL~~~~~-~~   71 (145)
T COG1051           7 RTPLVAVGALIVRNG--------------RILLVRRANEPGAGYWALPGGFVEIGETLEEAARRELKEETGLRVRVL-EL   71 (145)
T ss_pred             CCcceeeeEEEEeCC--------------EEEEEEecCCCCCCcEeCCCccCCCCCCHHHHHHHHHHHHhCCcccce-eE
Confidence            345678888888753              8999999764   67999999999999999999999999999997776 57


Q ss_pred             eeeEEeecccccccCCCCCCceEEEEEEEEe-cccccCCcccccceeEEeeHhHHhhh
Q 031268           96 LGEWEFRSKSRMNSCNSKEGGCRGYMFALEV-TEELESWPEQANYKRIWVSNNHFLWR  152 (162)
Q Consensus        96 l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~-~~~~~~~~~~~~~~~~W~~~~ea~~~  152 (162)
                      ++.|+......       ..++..++|.+.. .+............+.||+++++..+
T Consensus        72 ~~v~~~~~rd~-------r~~~v~~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~l~~~  122 (145)
T COG1051          72 LAVFDDPGRDP-------RGHHVSFLFFAAEPEGELLAGDGDDAAEVGWFPLDELPEL  122 (145)
T ss_pred             EEEecCCCCCC-------ceeEEEEEEEEEecCCCcccCChhhHhhcceecHhHcccc
Confidence            77777655431       1122333333333 33222222223478999999999864

>cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.83  E-value=1e-19  Score=126.15  Aligned_cols=96  Identities=20%  Similarity=0.107  Sum_probs=67.1

Q ss_pred             eEEEEEEeCCC------CCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeeeEEeecccccccCCCCCCceEEE
Q 031268           47 VLVLMISTPNR------DDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGY  120 (162)
Q Consensus        47 ~~vLLv~r~~~------~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  120 (162)
                      ++|||++|...      +.|.||||+++.|||+++||+||++||||+.+.... ......+....         .....+
T Consensus        12 g~vLl~~r~~~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~-~~~~~~~~~~~---------~~~~~~   81 (122)
T cd04682          12 GRLLLQLRDDKPGIPYPGHWDLPGGHREGGETPLECVLRELLEEIGLTLPESR-IPWFRVYPSAS---------PPGTEH   81 (122)
T ss_pred             CEEEEEEccCCCCCCCCCcEeCCCccccCCCCHHHHHHHHHHHHhCCcccccc-cceeEecccCC---------CCceEE
Confidence            48999998643      679999999999999999999999999999875431 21222222211         112566


Q ss_pred             EEEEEecccc-cCCcccccceeEEeeHhHHhhh
Q 031268          121 MFALEVTEEL-ESWPEQANYKRIWVSNNHFLWR  152 (162)
Q Consensus       121 ~f~~~~~~~~-~~~~~~~~~~~~W~~~~ea~~~  152 (162)
                      +|.+...... .....++..+++|++++|+...
T Consensus        82 ~f~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~  114 (122)
T cd04682          82 VFVVPLTAREDAILFGDEGQALRLMTVEEFLAH  114 (122)
T ss_pred             EEEEEEecCCCccccCchhheeecccHHHHhhc
Confidence            7776655432 2334445678999999999875

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04691 Nudix_Hydrolase_32 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.83  E-value=8e-20  Score=125.98  Aligned_cols=93  Identities=23%  Similarity=0.188  Sum_probs=66.0

Q ss_pred             EEEEEEeCC-----CCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeeeEEeecccccccCCCCCCceEEEEE
Q 031268           48 LVLMISTPN-----RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMF  122 (162)
Q Consensus        48 ~vLLv~r~~-----~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f  122 (162)
                      +|||++|..     .+.|+||||++|+|||+++||+||++||||+++... ..++.+.+...          .....++|
T Consensus        12 ~vLL~rR~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~-~~l~~~~~~~~----------~~~~~~~~   80 (117)
T cd04691          12 KVLLERRSLTKNADPGKLNIPGGHIEAGESQEEALLREVQEELGVDPLSY-TYLCSLYHPTS----------ELQLLHYY   80 (117)
T ss_pred             EEEEEEeCCCCCCCCCeEECcceeecCCCCHHHHHHHHHHHHHCCCcccc-eEEEEEeccCC----------CeEEEEEE
Confidence            899999853     357999999999999999999999999999986434 34554433221          11245666


Q ss_pred             EEEecccccCCcccccceeEEeeHhHHhhhh
Q 031268          123 ALEVTEELESWPEQANYKRIWVSNNHFLWRK  153 (162)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~W~~~~ea~~~~  153 (162)
                      .+.......  ...+..+++|++++++..+.
T Consensus        81 ~~~~~~~~~--~~~E~~~~~W~~~~~l~~~~  109 (117)
T cd04691          81 VVTFWQGEI--PAQEAAEVHWMTANDIVLAS  109 (117)
T ss_pred             EEEEecCCC--CcccccccEEcCHHHcchhh
Confidence            665433211  22445789999999998763

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.83  E-value=1e-19  Score=125.47  Aligned_cols=101  Identities=20%  Similarity=0.165  Sum_probs=67.6

Q ss_pred             eEEEEEEeCC----CCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCC-CCeeeEEeecccccccCCCCCCceEEEE
Q 031268           47 VLVLMISTPN----RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDE-NPLGEWEFRSKSRMNSCNSKEGGCRGYM  121 (162)
Q Consensus        47 ~~vLLv~r~~----~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~  121 (162)
                      ++|||++|..    .+.|.||||++++|||+++||+||++||||+.+.... ..++.+.+....        ......++
T Consensus        11 ~~vLL~~r~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~v~~~~~~~~~~~~~~~~~--------~~~~~~~~   82 (120)
T cd04683          11 DEVLLQRRANTGYMDGQWALPAGHLEKGEDAVTAAVREAREEIGVTLDPEDLRLAHTMHRRTED--------IESRIGLF   82 (120)
T ss_pred             CEEEEEEccCCCCCCCeEeCCccccCCCCCHHHHHHHHHHHHHCCccChhheEEEEEEEecCCC--------CceEEEEE
Confidence            3899999864    3579999999999999999999999999999875321 244544332221        01223455


Q ss_pred             EEEEeccccc-CCcccccceeEEeeHhHHhhhhcc
Q 031268          122 FALEVTEELE-SWPEQANYKRIWVSNNHFLWRKHS  155 (162)
Q Consensus       122 f~~~~~~~~~-~~~~~~~~~~~W~~~~ea~~~~~~  155 (162)
                      |.+....... ....++..+++|++++++...+.+
T Consensus        83 f~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~~~~  117 (120)
T cd04683          83 FTVRRWSGEPRNCEPDKCAELRWFPLDALPDDTVD  117 (120)
T ss_pred             EEEEeecCccccCCCCcEeeEEEEchHHCcchhcc
Confidence            6665432211 222234578999999999876544

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.83  E-value=5e-20  Score=128.71  Aligned_cols=108  Identities=18%  Similarity=0.126  Sum_probs=71.8

Q ss_pred             EEEEEEEeccCCcccccccccCceEEEEEEeCC---CCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeeeEE
Q 031268           24 VAGCIPYKFEKNDENKNCKMEKKVLVLMISTPN---RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWE  100 (162)
Q Consensus        24 ~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~---~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~~~  100 (162)
                      +|++++++.+             ++|||++|..   .+.|.+|||++++|||+.+||.||++||||+++... ..++.+.
T Consensus         3 av~~~i~~~~-------------~~vLL~~r~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~-~~~~~~~   68 (130)
T cd04681           3 AVGVLILNED-------------GELLVVRRAREPGKGTLDLPGGFVDPGESAEEALIREIREETGLKVTEL-SYLFSLP   68 (130)
T ss_pred             eEEEEEEcCC-------------CcEEEEEecCCCCCCcEeCCceeecCCCCHHHHHHHHHHHHhCCcccce-eEEEeec
Confidence            4666776643             4899999854   367999999999999999999999999999987655 3555443


Q ss_pred             eecccccccCCCCCCceEEEEEEEEecccccCCcccccceeEEeeHhHHh
Q 031268          101 FRSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWVSNNHFL  150 (162)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~W~~~~ea~  150 (162)
                      .......     .......++|.+.+.........++...++|++++++.
T Consensus        69 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~  113 (130)
T cd04681          69 NTYPYGG-----MEYDTLDLFFVCQVDDKPIVKAPDDVAELKWVVPQDIE  113 (130)
T ss_pred             ceeeeCC-----ceeEEEEEEEEEEeCCCCCcCChHHhheeEEecHHHCC
Confidence            2211110     01111224566665543222233345789999999984

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03427 MTH1 MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily

Probab=99.83  E-value=1.4e-19  Score=127.47  Aligned_cols=104  Identities=20%  Similarity=0.102  Sum_probs=73.4

Q ss_pred             eEEEEEEeCC---CCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeeeEEeecccccccCCCCCCceEEEEEE
Q 031268           47 VLVLMISTPN---RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMFA  123 (162)
Q Consensus        47 ~~vLLv~r~~---~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~  123 (162)
                      ++|||++|..   .+.|.+|||++++|||+.+||+||++||||+.+... ..++.+.+.....       ......++|.
T Consensus        12 ~~vLL~~r~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~-~~~~~~~~~~~~~-------~~~~~~~~f~   83 (137)
T cd03427          12 DKVLLLNRKKGPGWGGWNGPGGKVEPGETPEECAIRELKEETGLTIDNL-KLVGIIKFPFPGE-------EERYGVFVFL   83 (137)
T ss_pred             CEEEEEEecCCCCCCeEeCCceeCCCCCCHHHHHHHHHHHhhCeEeecc-eEEEEEEEEcCCC-------CcEEEEEEEE
Confidence            3899999876   467999999999999999999999999999998766 5677776554321       1123456666


Q ss_pred             EEecccccCCcccccceeEEeeHhHHhhh-hcccccc
Q 031268          124 LEVTEELESWPEQANYKRIWVSNNHFLWR-KHSNLVG  159 (162)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~W~~~~ea~~~-~~~~l~~  159 (162)
                      +........ .+.+...++|++++++..+ +.++.+.
T Consensus        84 ~~~~~~~~~-~~~e~~~~~W~~~~el~~~~~~~~~~~  119 (137)
T cd03427          84 ATEFEGEPL-KESEEGILDWFDIDDLPLLPMWPGDRE  119 (137)
T ss_pred             ECCcccccC-CCCccccceEEcHhhcccccCCCCcHH
Confidence            654332222 2333467899999999875 4444433

MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a m

>PRK00714 RNA pyrophosphohydrolase; Reviewed

Probab=99.82  E-value=1.3e-19  Score=131.09  Aligned_cols=127  Identities=24%  Similarity=0.177  Sum_probs=83.5

Q ss_pred             cCceeEEEEEEEeccCCcccccccccCceEEEEEEeCCC-CCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCee
Q 031268           19 DQLRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNR-DDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLG   97 (162)
Q Consensus        19 ~~~r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~~-~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~   97 (162)
                      ..+|.+|++++++.+             ++|||+++... +.|.+|||++++|||+++||.||++||||+.+... ..++
T Consensus         5 ~~~~~~v~~~i~~~~-------------g~vLL~~r~~~~~~w~~P~G~~~~gE~~~~aa~REl~EEtG~~~~~~-~~~~   70 (156)
T PRK00714          5 DGYRPNVGIILLNRQ-------------GQVFWGRRIGQGHSWQFPQGGIDPGETPEQAMYRELYEEVGLRPEDV-EILA   70 (156)
T ss_pred             CCCCCeEEEEEEecC-------------CEEEEEEEcCCCCeEECCcccCCCCcCHHHHHHHHHHHHhCCCccce-EEEE
Confidence            357889999999865             48999999654 67999999999999999999999999999987544 3344


Q ss_pred             eE----Eeecccc--cccCCCCCCceEEEEEEEEeccc-c--c--CCcccccceeEEeeHhHHhhhhccccccc
Q 031268           98 EW----EFRSKSR--MNSCNSKEGGCRGYMFALEVTEE-L--E--SWPEQANYKRIWVSNNHFLWRKHSNLVGM  160 (162)
Q Consensus        98 ~~----~~~~~~~--~~~~~~~~~~~~~~~f~~~~~~~-~--~--~~~~~~~~~~~W~~~~ea~~~~~~~l~~~  160 (162)
                      .+    .|.....  ....+. ......++|.+..... .  .  ..++.+..+++|++++|+.+++.+..+.+
T Consensus        71 ~~~~~~~y~~~~~~~~~~~~~-~~~~~~~~fl~~~~~~~~~~~l~~~~~~E~~~~~W~~~del~~~~~~~~r~~  143 (156)
T PRK00714         71 ETRDWLRYDLPKRLVRRSKGV-YRGQKQKWFLLRLTGDDSEINLNTTSHPEFDAWRWVSYWYPLDQVVPFKRDV  143 (156)
T ss_pred             EcCCeEEecCcHHHhhccCCc-ccCcEEEEEEEEecCCCccccCCCCCCCCeeeeEeCCHHHHHHhchhhhHHH
Confidence            32    2221110  000000 0111345677665321 1  1  11234567999999999998765544443

>cd04671 Nudix_Hydrolase_13 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.82  E-value=1.2e-19  Score=126.26  Aligned_cols=104  Identities=22%  Similarity=0.263  Sum_probs=72.6

Q ss_pred             EEEEEEEeccCCcccccccccCceEEEEEEeCC---CCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeeeEE
Q 031268           24 VAGCIPYKFEKNDENKNCKMEKKVLVLMISTPN---RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWE  100 (162)
Q Consensus        24 ~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~---~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~~~  100 (162)
                      ++++|+++.+             ++|||+++.+   .+.|.||||++|+|||+++||+||++||||+++... ..++...
T Consensus         2 ~~~~vv~~~~-------------~~vLl~~r~~~~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtG~~~~~~-~~~~~~~   67 (123)
T cd04671           2 IVAAVILNNQ-------------GEVLLIQEAKRSCRGKWYLPAGRMEPGETIEEAVKREVKEETGLDCEPT-TLLSVEE   67 (123)
T ss_pred             EEEEEEEcCC-------------CEEEEEEecCCCCCCeEECceeecCCCCCHHHHHHHHHHHHHCCeeecc-eEEEEEc
Confidence            5777777654             4899999854   357999999999999999999999999999998765 3454332


Q ss_pred             eecccccccCCCCCCceEEEEEEEEecccc-cC--CcccccceeEEeeHhHHhhhh
Q 031268          101 FRSKSRMNSCNSKEGGCRGYMFALEVTEEL-ES--WPEQANYKRIWVSNNHFLWRK  153 (162)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~-~~--~~~~~~~~~~W~~~~ea~~~~  153 (162)
                      . ..           ....++|.+...+.. ..  .++.+..+++|++++++...+
T Consensus        68 ~-~~-----------~~~~~~f~a~~~~g~~~~~~~~~~e~~~~~W~~~~el~~~~  111 (123)
T cd04671          68 Q-GG-----------SWFRFVFTGNITGGDLKTEKEADSESLQARWYSNKDLPLPL  111 (123)
T ss_pred             c-CC-----------eEEEEEEEEEEeCCeEccCCCCCcceEEEEEECHHHCCCcc
Confidence            1 10           123556766654321 11  122334689999999995444

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03426 CoAse Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes

Probab=99.82  E-value=1.2e-19  Score=131.36  Aligned_cols=110  Identities=18%  Similarity=0.048  Sum_probs=73.8

Q ss_pred             eEEEEEEEeccCCcccccccccCceEEEEEEeCC-----CCCeeeCCCccCCC-CCHHHHHHHHHHHHhCcccccCCCCe
Q 031268           23 LVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPN-----RDDLVFPKGGWEDD-ETVSEAACREALEEAGVRGLLDENPL   96 (162)
Q Consensus        23 ~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~-----~~~W~lPgG~ve~g-Et~~eaa~REl~EEtGl~~~~~~~~l   96 (162)
                      .++..|++...+          +.++|||++|..     .+.|.||||++|+| ||+++||+||++||||+.+... ..+
T Consensus         2 ~~av~v~l~~~~----------~~~~vLL~~R~~~~~~~~g~w~lPGG~ve~gdEs~~eaa~REl~EEtGl~~~~~-~~l   70 (157)
T cd03426           2 RAAVLVLLVERE----------GELRVLLTKRASHLRSHPGQVAFPGGKVDPGDEDPVATALREAEEEIGLPPDSV-EVL   70 (157)
T ss_pred             ceEEEEEEEeCC----------CceEEEEEEcccccccCCCcEECCCCCcCCCcCCHHHHHHHHHHHHhCCCccce-EEE
Confidence            345556665443          357999999864     36799999999999 9999999999999999987655 355


Q ss_pred             eeEEeecccccccCCCCCCceEEEEEEEEeccc-ccCCcccccceeEEeeHhHHhhh
Q 031268           97 GEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEE-LESWPEQANYKRIWVSNNHFLWR  152 (162)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~-~~~~~~~~~~~~~W~~~~ea~~~  152 (162)
                      +.+.......         ...+++|.+.+... .......+..+++|++++++.+.
T Consensus        71 ~~~~~~~~~~---------~~~v~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~  118 (157)
T cd03426          71 GRLPPYYTRS---------GFVVTPVVGLVPPPLPLVLNPDEVAEVFEVPLSFLLDP  118 (157)
T ss_pred             EECCCccccC---------CCEEEEEEEEECCCCCCCCCHHHhheeEEEcHHHHhCc
Confidence            5443211111         12344555544432 11222234578999999999986

The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.

>cd04661 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily

Probab=99.81  E-value=1.8e-19  Score=126.83  Aligned_cols=111  Identities=17%  Similarity=0.285  Sum_probs=73.9

Q ss_pred             ceEEEEEEeCC--CCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccC---CCCeeeEEeecccccccCCCCCCceEEE
Q 031268           46 KVLVLMISTPN--RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLD---ENPLGEWEFRSKSRMNSCNSKEGGCRGY  120 (162)
Q Consensus        46 ~~~vLLv~r~~--~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~  120 (162)
                      ..++||+++..  .+.|.||||++|+|||+.+||+||++||||+.+...   ...++.+.+.......  .........+
T Consensus        12 ~~~~Llvk~~~~~~g~W~fPgG~ve~gEt~~eaa~REl~EEtGl~v~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~   89 (132)
T cd04661          12 DTLVLLVQQKVGSQNHWILPQGKREEGETLRQTAERTLKELCGNNLKAKFYGNAPVGFYKYKYPKAVR--NEGIVGAKVF   89 (132)
T ss_pred             CcEEEEEEeecCCCCeeECCcccccCCCCHHHHHHHHHHHhhCCCceEEEEEecCcEEEEEecCcccc--cccCcccEEE
Confidence            46899999864  367999999999999999999999999999976532   0123333332211100  0011123577


Q ss_pred             EEEEEecccccCCcccccceeEEeeHhHHhhhhcccccc
Q 031268          121 MFALEVTEELESWPEQANYKRIWVSNNHFLWRKHSNLVG  159 (162)
Q Consensus       121 ~f~~~~~~~~~~~~~~~~~~~~W~~~~ea~~~~~~~l~~  159 (162)
                      +|.+...+.... +..++.+++|++++|+.+++.++..+
T Consensus        90 ~f~~~~~~g~~~-~~~e~~~~~W~~~~el~~~l~~~~~~  127 (132)
T cd04661          90 FFKARYMSGQFE-LSQNQVDFKWLAKEELQKYLNPPYLQ  127 (132)
T ss_pred             EEEEEEecCccc-cCCCcceeEecCHHHHHhhcCHHHHH
Confidence            888776543222 23446899999999999987665543

MRPs are thought to be involved in the maintenance of the mitochondrial DNA. In general, members of the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for activity and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. MRP L46 appears to contain a modified nudix motif.

>cd03429 NADH_pyrophosphatase NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP

Probab=99.81  E-value=1.7e-19  Score=126.78  Aligned_cols=94  Identities=19%  Similarity=0.131  Sum_probs=67.5

Q ss_pred             eEEEEEEeCC--CCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeeeEEeecccccccCCCCCCceEEEEEEE
Q 031268           47 VLVLMISTPN--RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMFAL  124 (162)
Q Consensus        47 ~~vLLv~r~~--~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~  124 (162)
                      ++|||++|+.  .+.|.+|||++++|||+++||+||++||||+.+... ..++.+.+...           .....+|.+
T Consensus        12 ~~vLL~~r~~~~~~~w~lPgG~ie~gEt~~~aA~REl~EEtGl~~~~~-~~l~~~~~~~~-----------~~~~~~f~~   79 (131)
T cd03429          12 DRILLARQPRFPPGMYSLLAGFVEPGESLEEAVRREVKEEVGIRVKNI-RYVGSQPWPFP-----------SSLMLGFTA   79 (131)
T ss_pred             CEEEEEEecCCCCCcCcCCcccccCCCCHHHHHhhhhhhccCceeeee-EEEeecCCCCC-----------ceEEEEEEE
Confidence            5899999875  467999999999999999999999999999997655 34554332211           123455666


Q ss_pred             EecccccCCcccccceeEEeeHhHHhhh
Q 031268          125 EVTEELESWPEQANYKRIWVSNNHFLWR  152 (162)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~W~~~~ea~~~  152 (162)
                      ..........+++..+++|++++++.++
T Consensus        80 ~~~~~~~~~~~~E~~~~~w~~~~el~~~  107 (131)
T cd03429          80 EADSGEIVVDDDELEDARWFSRDEVRAA  107 (131)
T ss_pred             EEcCCcccCCchhhhccEeecHHHHhhc
Confidence            6553222222334578999999998875

Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity. Members of this family are also recognized by the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. A block of 8 conserved amino acids downstream of the nudix motif is thought to give NADH pyrophosphatase its specificity for NADH. NADH pyrophosphatase forms a dimer.

>PRK15472 nucleoside triphosphatase NudI; Provisional

Probab=99.81  E-value=2e-19  Score=127.62  Aligned_cols=103  Identities=20%  Similarity=0.296  Sum_probs=61.7

Q ss_pred             eEEEEEEeCCC-----CCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeeeEEeecccccccC-CCCC-CceEE
Q 031268           47 VLVLMISTPNR-----DDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSC-NSKE-GGCRG  119 (162)
Q Consensus        47 ~~vLLv~r~~~-----~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~-~~~~-~~~~~  119 (162)
                      ++|||++|...     +.|.+|||++|+|||+++||+||++||||+.+...  .+..+.+........+ .+.. ..+.+
T Consensus        15 ~~vLl~~R~~~~~~~~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (141)
T PRK15472         15 GAYLLCKMADDRGVFPGQWALSGGGVEPGERIEEALRREIREELGEQLLLT--EITPWTFRDDIRTKTYADGRKEEIYMI   92 (141)
T ss_pred             CEEEEEEecccCCCCCCceeCCcccCCCCCCHHHHHHHHHHHHHCCceeee--eeccccccccceeEEecCCCceeEEEE
Confidence            48999998542     67999999999999999999999999999986433  1221111100000000 0000 01111


Q ss_pred             -EEEEEEecccccCCcccccceeEEeeHhHHhhh
Q 031268          120 -YMFALEVTEELESWPEQANYKRIWVSNNHFLWR  152 (162)
Q Consensus       120 -~~f~~~~~~~~~~~~~~~~~~~~W~~~~ea~~~  152 (162)
                       .+|.+..... ...+.++..+++|++++|+.++
T Consensus        93 ~~~~~~~~~~~-~~~~~~E~~~~~w~~~~el~~l  125 (141)
T PRK15472         93 YLIFDCVSANR-DVKINEEFQDYAWVKPEDLVHY  125 (141)
T ss_pred             EEEEEeecCCC-cccCChhhheEEEccHHHhccc
Confidence             2233332221 1123345579999999999987

>cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.81  E-value=4.2e-19  Score=123.85  Aligned_cols=107  Identities=21%  Similarity=0.201  Sum_probs=75.5

Q ss_pred             EEEEEEEeccCCcccccccccCceEEEEEEeCC-----CCCeee-CCCccCCCCCHHHHHHHHHHHHhCcccccCCCCee
Q 031268           24 VAGCIPYKFEKNDENKNCKMEKKVLVLMISTPN-----RDDLVF-PKGGWEDDETVSEAACREALEEAGVRGLLDENPLG   97 (162)
Q Consensus        24 ~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~-----~~~W~l-PgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~   97 (162)
                      ++.+++++.+             ++|||++|..     .+.|++ |||++++|||+++||+||++||||+.+... ..++
T Consensus         2 ~~~v~i~~~~-------------~~iLl~~R~~~~~~~~g~w~~~~GG~ve~gE~~~~aa~REl~EEtGl~~~~l-~~~~   67 (126)
T cd04697           2 ATYIFVFNSE-------------GKLCVHKRTLTKDWCPGYWDIAFGGVVQAGESYLQNAQRELEEELGIDGVQL-TPLG   67 (126)
T ss_pred             eEEEEEEcCC-------------CeEEEEECCCCCCCCCCcccCcCCcccCCCCCHHHHHHHHHHHHHCCCcccc-EEee
Confidence            4667777654             4899988753     256998 699999999999999999999999997644 4566


Q ss_pred             eEEeecccccccCCCCCCceEEEEEEEEecccccCCcccccceeEEeeHhHHhhhhc
Q 031268           98 EWEFRSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWVSNNHFLWRKH  154 (162)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~W~~~~ea~~~~~  154 (162)
                      .|.+.....         ....++|.+...... ...+++..+++|++++++.+++.
T Consensus        68 ~~~~~~~~~---------~~~~~~f~~~~~~~~-~~~~~E~~~~~w~~~~el~~~~~  114 (126)
T cd04697          68 LFYYDTDGN---------RVWGKVFSCVYDGPL-KLQEEEVEEITWLSINEILQFKE  114 (126)
T ss_pred             EEEecCCCc---------eEEEEEEEEEECCCC-CCCHhHhhheEEcCHHHHHHHhh
Confidence            665543211         123456666554322 22233457899999999998754

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway

Probab=99.81  E-value=6.1e-19  Score=128.53  Aligned_cols=119  Identities=15%  Similarity=0.035  Sum_probs=80.0

Q ss_pred             cCc-eeEEEEEEEeccCCcccccccccCceEEEEEEeCCC-----CCeeeC-CCccCCCCCHHHHHHHHHHHHhCccccc
Q 031268           19 DQL-RLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNR-----DDLVFP-KGGWEDDETVSEAACREALEEAGVRGLL   91 (162)
Q Consensus        19 ~~~-r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~~-----~~W~lP-gG~ve~gEt~~eaa~REl~EEtGl~~~~   91 (162)
                      +.. +.+|++++++.+             ++|||++|...     +.|.+| ||++++|||+++||+||++||||+.+..
T Consensus        26 ~~~~~~~v~v~i~~~~-------------~~iLl~kR~~~~~~~Pg~w~~~~gG~ie~GEt~~eaa~REl~EEtGl~~~~   92 (165)
T cd02885          26 GTLLHRAFSVFLFNSK-------------GRLLLQRRALSKYTFPGLWTNTCCSHPLPGEGVKDAAQRRLREELGITGDL   92 (165)
T ss_pred             CCcceeEEEEEEEcCC-------------CcEEEEeccCCCccCCCcccccccCCCCCCCCHHHHHHHHHHHHhCCCccc
Confidence            444 778877777654             48999988642     558886 8999999999999999999999999765


Q ss_pred             CCCCe-eeEEeecccccccCCCCCCceEEEEEEEEecccccCCcccccceeEEeeHhHHhhhhccc
Q 031268           92 DENPL-GEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWVSNNHFLWRKHSN  156 (162)
Q Consensus        92 ~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~W~~~~ea~~~~~~~  156 (162)
                      . ..+ +.+.|.......    .......++|.+....... ...++..+++|++++++.+++.++
T Consensus        93 ~-~~~~~~~~~~~~~~~~----~~~~~i~~~f~~~~~~~~~-~~~~Ev~~~~w~~~~el~~~~~~~  152 (165)
T cd02885          93 L-ELVLPRFRYRAPDDGG----LVEHEIDHVFFARADVTLI-PNPDEVSEYRWVSLEDLKELVAAA  152 (165)
T ss_pred             h-hhccceEEEEEEcCCC----ceeeEEEEEEEEEeCCCCC-CCccceeEEEEECHHHHHHHHHhC
Confidence            5 343 555544321110    0011134566665543322 233345789999999999987654

Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm

>cd04692 Nudix_Hydrolase_33 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.80  E-value=9e-19  Score=124.82  Aligned_cols=120  Identities=16%  Similarity=0.077  Sum_probs=78.7

Q ss_pred             ceeEEEEEEEeccCCcccccccccCceEEEEEEeCCC-----CCeee-CCCccCCCCCHHHHHHHHHHHHhCcccccCC-
Q 031268           21 LRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNR-----DDLVF-PKGGWEDDETVSEAACREALEEAGVRGLLDE-   93 (162)
Q Consensus        21 ~r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~~-----~~W~l-PgG~ve~gEt~~eaa~REl~EEtGl~~~~~~-   93 (162)
                      ++.+|-+++++.++          ++++|||.+|...     +.|.+ |||++++|||+++||+||++||||+.+.... 
T Consensus         1 ~h~~v~~~v~~~~~----------~~~~vLl~~R~~~~~~~pg~W~~~~gG~ve~gEt~~~aa~REl~EEtGl~~~~~~l   70 (144)
T cd04692           1 WHRTFHCWIITKDE----------GKGYVLLQKRSANKKTYPGLWDISSAGHILAGETPLEDGIRELEEELGLDVSADDL   70 (144)
T ss_pred             CceEEEEEEEEccC----------CCCEEEEEecCCCCCCCCCccccccCcccCCCCCHHHHHHHHHHHHhCCCCChHHe
Confidence            35677788888653          3578999988642     56998 5999999999999999999999999864321 


Q ss_pred             CCeeeEEeecccccccCCCCCCceEEEEEEEEeccc--ccCCcccccceeEEeeHhHHhhhhc
Q 031268           94 NPLGEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEE--LESWPEQANYKRIWVSNNHFLWRKH  154 (162)
Q Consensus        94 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~--~~~~~~~~~~~~~W~~~~ea~~~~~  154 (162)
                      ..++.+.+.......    .......++|.+.....  .....+.+..+++|++++++.+++.
T Consensus        71 ~~~~~~~~~~~~~~~----~~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~  129 (144)
T cd04692          71 IPLGTFKIEYDHIGK----LIDREFHHVYLYELKVPLEEFTLQKEEVAGVVLIPLDEFAELLE  129 (144)
T ss_pred             EEeeEEEEeccccCC----CccceEEEEEEEeccCChhhcCCChhHhheEEEECHHHHHHHHH
Confidence            245555543321100    01112345666654331  1122334557899999999998864

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04693 Nudix_Hydrolase_34 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.80  E-value=6.1e-19  Score=122.95  Aligned_cols=108  Identities=20%  Similarity=0.129  Sum_probs=71.1

Q ss_pred             EEEEEEEeccCCcccccccccCceEEEEEEeCC-----CCCeeeC-CCccCCCCCHHHHHHHHHHHHhCcccccCC-CCe
Q 031268           24 VAGCIPYKFEKNDENKNCKMEKKVLVLMISTPN-----RDDLVFP-KGGWEDDETVSEAACREALEEAGVRGLLDE-NPL   96 (162)
Q Consensus        24 ~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~-----~~~W~lP-gG~ve~gEt~~eaa~REl~EEtGl~~~~~~-~~l   96 (162)
                      +|.+++++.+             ++|||++|..     .+.|.+| ||++++|||+ +||+||++||||+.+.... ..+
T Consensus         2 ~v~v~~~~~~-------------g~vLl~~R~~~~~~~pg~w~~p~GG~ve~gE~~-~aa~REl~EEtGl~~~~~~~~~~   67 (127)
T cd04693           2 VVHVCIFNSK-------------GELLLQKRSPNKDGWPGMWDLSVGGHVQAGETS-TAAEREVKEELGLELDFSELRPL   67 (127)
T ss_pred             eEEEEEEeCC-------------CeEEEEEccCCCCCCCCcccccCCCcCCCCCCH-HHHHHHHHHHhCCCcChhhcEEE
Confidence            4566666543             4899998863     2579998 9999999999 9999999999999976431 134


Q ss_pred             eeEEeecccccccCCCCCCceEEEEEEEEecccccCCcccccceeEEeeHhHHhhhhcc
Q 031268           97 GEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWVSNNHFLWRKHS  155 (162)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~W~~~~ea~~~~~~  155 (162)
                      +.+.+...          ....+++|.+...........++..+++|++++++.+++.+
T Consensus        68 ~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~  116 (127)
T cd04693          68 FRYFFEAE----------GFDDYYLFYADVEIGKLILQKEEVDEVKFVSKDEIDGLIGH  116 (127)
T ss_pred             EEEEeecC----------CeEEEEEEEecCcccccccCHHHhhhEEEeCHHHHHHHHhc
Confidence            44433321          11233444433322212223334578999999999998644

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04662 Nudix_Hydrolase_5 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.80  E-value=6e-19  Score=122.62  Aligned_cols=58  Identities=31%  Similarity=0.430  Sum_probs=50.2

Q ss_pred             eEEEEEEEeccCCcccccccccCceEEEEEEe-------CCCCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccc
Q 031268           23 LVAGCIPYKFEKNDENKNCKMEKKVLVLMIST-------PNRDDLVFPKGGWEDDETVSEAACREALEEAGVRGL   90 (162)
Q Consensus        23 ~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r-------~~~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~   90 (162)
                      +++|+|+|+.+.          +..+|||+++       +..+.|+||||+++.|||+++||+||++||||+.+.
T Consensus         1 ~~~g~v~~~~~~----------~~~~vlL~~~~~~~~~~~~~~~W~lPgG~ie~~E~~~~aA~REl~EEtGl~~~   65 (126)
T cd04662           1 LSAGILLYRFRD----------GRIEVLLVHPGGPFWANKDLGAWSIPKGEYTEGEDPLLAAKREFSEETGFCVD   65 (126)
T ss_pred             CeEEEEEEEEcC----------CcEEEEEEEccCccccCCCCCEEECCcccCCCCcCHHHHHHHHHHHHhCCcce
Confidence            368999998764          4689999985       344679999999999999999999999999999865

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>PRK10546 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional

Probab=99.78  E-value=4.1e-18  Score=119.73  Aligned_cols=100  Identities=15%  Similarity=0.164  Sum_probs=68.0

Q ss_pred             eEEEEEEeCCC----CCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeeeEEeecccccccCCCCCCceEEEEE
Q 031268           47 VLVLMISTPNR----DDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMF  122 (162)
Q Consensus        47 ~~vLLv~r~~~----~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f  122 (162)
                      ++|||++|...    +.|+||||++++|||+.+||+||++||||+.+... ..++.+.+.....         ....++|
T Consensus        15 ~~vLL~~R~~~~~~~g~w~~PgG~ve~gE~~~~a~~RE~~EE~Gl~~~~~-~~~~~~~~~~~~~---------~~~~~~~   84 (135)
T PRK10546         15 GKILLAQRPAHSDQAGLWEFAGGKVEPGESQPQALIRELREELGIEATVG-EYVASHQREVSGR---------RIHLHAW   84 (135)
T ss_pred             CEEEEEEccCCCCCCCcEECCcccCCCCCCHHHHHHHHHHHHHCCccccc-eeEEEEEEecCCc---------EEEEEEE
Confidence            48999988643    67999999999999999999999999999997655 3455554433211         1234555


Q ss_pred             EEEecccccCCcccccceeEEeeHhHHhhh-hccccc
Q 031268          123 ALEVTEELESWPEQANYKRIWVSNNHFLWR-KHSNLV  158 (162)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~W~~~~ea~~~-~~~~l~  158 (162)
                      .+.....  .....+...++|++++++.++ +.+..+
T Consensus        85 ~~~~~~~--~~~~~e~~~~~W~~~~el~~~~~~~~~~  119 (135)
T PRK10546         85 HVPDFHG--ELQAHEHQALVWCTPEEALRYPLAPADI  119 (135)
T ss_pred             EEEEecC--cccccccceeEEcCHHHcccCCCCcCcH
Confidence            5543221  111223467899999999876 344433

>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional

Probab=99.78  E-value=3.5e-18  Score=126.71  Aligned_cols=120  Identities=19%  Similarity=0.173  Sum_probs=78.0

Q ss_pred             cCceeEEEEEEEeccCCcccccccccCceEEEEEEeCCC-----CCeeeC-CCccCCCCCHHHHHHHHHHHHhCcccccC
Q 031268           19 DQLRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNR-----DDLVFP-KGGWEDDETVSEAACREALEEAGVRGLLD   92 (162)
Q Consensus        19 ~~~r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~~-----~~W~lP-gG~ve~gEt~~eaa~REl~EEtGl~~~~~   92 (162)
                      +.++.++++++++.+             ++|||++|...     +.|.+| ||++++|||+++||+||++||||+++...
T Consensus        31 ~~~h~av~v~i~~~~-------------g~vLL~rR~~~~~~~PG~w~~~~gG~ve~GEt~~~aa~REl~EEtGl~~~~~   97 (184)
T PRK03759         31 TPLHLAFSCYLFDAD-------------GRLLVTRRALSKKTWPGVWTNSCCGHPQPGESLEDAVIRRCREELGVEITDL   97 (184)
T ss_pred             CCeeeEEEEEEEcCC-------------CeEEEEEccCCCCCCCCcccccccCCCCCCCCHHHHHHHHHHHHhCCCcccc
Confidence            456777777777654             48999987431     346665 79999999999999999999999987533


Q ss_pred             CCCeeeEEeecccccccCCCCCCceEEEEEEEEecccccCCcccccceeEEeeHhHHhhhhccc
Q 031268           93 ENPLGEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWVSNNHFLWRKHSN  156 (162)
Q Consensus        93 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~W~~~~ea~~~~~~~  156 (162)
                      ...++.+.|.......    .......++|.+...+.. ....++..+++|++++++.+++.++
T Consensus        98 ~~~~~~~~~~~~~~~~----~~~~~~~~vf~~~~~~~~-~~~~~Ev~~~~W~~~~el~~~i~~~  156 (184)
T PRK03759         98 ELVLPDFRYRATDPNG----IVENEVCPVFAARVTSAL-QPNPDEVMDYQWVDPADLLRAVDAT  156 (184)
T ss_pred             ccccceEEEEEecCCC----ceeeEEEEEEEEEECCCC-CCChhHeeeEEEECHHHHHHHHHhC
Confidence            2344555443221110    011123456776655322 2222345789999999999886543

>cd04699 Nudix_Hydrolase_39 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.77  E-value=5e-18  Score=117.98  Aligned_cols=100  Identities=19%  Similarity=0.130  Sum_probs=64.8

Q ss_pred             eEEEEEEeCC-----CCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeeeEEeecccccccCCCCCCceEEEE
Q 031268           47 VLVLMISTPN-----RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYM  121 (162)
Q Consensus        47 ~~vLLv~r~~-----~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  121 (162)
                      ++|||++|..     .+.|.||||++++|||+.+||+||++||||+.+... ..++...+.....       ......++
T Consensus        13 ~~iLl~kr~~~~~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~~~~-~~~~~~~~~~~~~-------~~~~~~~~   84 (129)
T cd04699          13 GRILILKRSKDERTAPGKWELPGGKVEEGETFEEALKREVYEETGLTVTPF-LRYPSTVTHEDSG-------VYNVIYLV   84 (129)
T ss_pred             CcEEEEEecCCCCCCCCcCcCCccCccCCCCHHHHHHHHHHHhhCcEEEee-eeeeEEEEEcCCC-------EEEEEEEE
Confidence            4899998864     356999999999999999999999999999987655 2332222211110       00123344


Q ss_pred             EEEEecccccCCcccccceeEEeeHhHHhhhhcc
Q 031268          122 FALEVTEELESWPEQANYKRIWVSNNHFLWRKHS  155 (162)
Q Consensus       122 f~~~~~~~~~~~~~~~~~~~~W~~~~ea~~~~~~  155 (162)
                      |.+...... .....+..+++|++++++..+..+
T Consensus        85 ~~~~~~~~~-~~~~~e~~~~~w~~~~el~~~~~~  117 (129)
T cd04699          85 FVCEALSGA-VKLSDEHEEYAWVTLEELAILKAD  117 (129)
T ss_pred             EEeeecCCc-ccCChhheEEEEecHHHhhhhhcc
Confidence            554333221 112234568899999998766544

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK11762 nudE adenosine nucleotide hydrolase NudE; Provisional

Probab=99.77  E-value=7.4e-18  Score=125.04  Aligned_cols=99  Identities=21%  Similarity=0.064  Sum_probs=69.6

Q ss_pred             eEEEEEEeCCC----CCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeeeEEeecccccccCCCCCCceEEEEE
Q 031268           47 VLVLMISTPNR----DDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMF  122 (162)
Q Consensus        47 ~~vLLv~r~~~----~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f  122 (162)
                      ++|||+++...    ..|+||||.+|+|||+++||+||++||||+.+... ..++.+.......         ....++|
T Consensus        59 ~~vlLvrq~r~~~~~~~~elPaG~ve~gE~~~~aA~REl~EEtG~~~~~l-~~l~~~~~~~~~~---------~~~~~~f  128 (185)
T PRK11762         59 DTLLLIREYAAGTERYELGFPKGLIDPGETPLEAANRELKEEVGFGARQL-TFLKELSLAPSYF---------SSKMNIV  128 (185)
T ss_pred             CEEEEEEeecCCCCCcEEEccceeCCCCCCHHHHHHHHHHHHHCCCCcce-EEEEEEecCCCcc---------CcEEEEE
Confidence            48999998532    34999999999999999999999999999998766 5677654332211         1245666


Q ss_pred             EEEeccccc-CCcccccceeEEeeHhHHhhhhcc
Q 031268          123 ALEVTEELE-SWPEQANYKRIWVSNNHFLWRKHS  155 (162)
Q Consensus       123 ~~~~~~~~~-~~~~~~~~~~~W~~~~ea~~~~~~  155 (162)
                      .+....... ...+.+..+..|++++++.+++.+
T Consensus       129 ~a~~~~~~~~~~~e~E~i~~~~~~~~e~~~~~~~  162 (185)
T PRK11762        129 LAEDLYPERLEGDEPEPLEVVRWPLADLDELLAR  162 (185)
T ss_pred             EEEccccccCCCCCCceeEEEEEcHHHHHHHHHc
Confidence            655332211 112333467899999999988654

>PRK15393 NUDIX hydrolase YfcD; Provisional

Probab=99.77  E-value=7e-18  Score=124.68  Aligned_cols=96  Identities=21%  Similarity=0.256  Sum_probs=65.2

Q ss_pred             eEEEEEEeCCC-----CCe-eeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeeeEEeecccccccCCCCCCceEEE
Q 031268           47 VLVLMISTPNR-----DDL-VFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGY  120 (162)
Q Consensus        47 ~~vLLv~r~~~-----~~W-~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  120 (162)
                      ++|||.+|...     +.| .+|||++++|||+++||+|||+||||+..... ..++.+.+.....         ....+
T Consensus        49 g~iLL~~R~~~~~~~pg~~~~~pGG~ve~GEs~~eAA~REL~EEtGl~~~~~-~~~~~~~~~~~~~---------~~~~~  118 (180)
T PRK15393         49 GKILVQRRTETKDFLPGMLDATAGGVVQAGEQLLESARREAEEELGIAGVPF-AEHGQFYFEDENC---------RVWGA  118 (180)
T ss_pred             CeEEEEEeCCCCCCCCCcccccCCCcCCCCCCHHHHHHHHHHHHHCCCCccc-eeceeEEecCCCc---------eEEEE
Confidence            58999888643     234 68999999999999999999999999986544 3456654433211         11234


Q ss_pred             EEEEEecccccCCcccccceeEEeeHhHHhhhh
Q 031268          121 MFALEVTEELESWPEQANYKRIWVSNNHFLWRK  153 (162)
Q Consensus       121 ~f~~~~~~~~~~~~~~~~~~~~W~~~~ea~~~~  153 (162)
                      +|.+...... .....+...++|++++++.+++
T Consensus       119 ~f~~~~~~~~-~~~~~E~~~~~W~~~~el~~~~  150 (180)
T PRK15393        119 LFSCVSHGPF-ALQEEEVSEVCWMTPEEITARC  150 (180)
T ss_pred             EEEEEeCCCC-CCChHHeeEEEECCHHHHhhhh
Confidence            5555443221 2223345789999999999873

>cd04665 Nudix_Hydrolase_8 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.77  E-value=7.1e-18  Score=116.57  Aligned_cols=91  Identities=21%  Similarity=0.180  Sum_probs=68.2

Q ss_pred             EEEEEEeCCCCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeeeEEeecccccccCCCCCCceEEEEEEEEec
Q 031268           48 LVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMFALEVT  127 (162)
Q Consensus        48 ~vLLv~r~~~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~  127 (162)
                      ++||++++ .+.|.||||++++||++++||+||++||||+.+... ..++.|.+.....         .....+|.+.+.
T Consensus        12 ~vLl~~~~-~~~w~lPgG~ve~gE~~~~aa~REl~EE~G~~~~~~-~~l~~~~~~~~~~---------~~~~~~y~a~~~   80 (118)
T cd04665          12 GLLLVRHK-DRGWEFPGGHVEPGETIEEAARREVWEETGAELGSL-TLVGYYQVDLFES---------GFETLVYPAVSA   80 (118)
T ss_pred             EEEEEEeC-CCEEECCccccCCCCCHHHHHHHHHHHHHCCccCce-EEEEEEEecCCCC---------cEEEEEEEEEEE
Confidence            89999887 457999999999999999999999999999998655 5778776554321         224566666655


Q ss_pred             ccccCCcccccceeEEeeHhHH
Q 031268          128 EELESWPEQANYKRIWVSNNHF  149 (162)
Q Consensus       128 ~~~~~~~~~~~~~~~W~~~~ea  149 (162)
                      ......+..+.....|++....
T Consensus        81 ~~~~~~~~~E~~~~~~~~~~~~  102 (118)
T cd04665          81 QLEEKASYLETDGPVLFKNEPE  102 (118)
T ss_pred             ecccccccccccCcEEeccCCc
Confidence            4433335566688899997655

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>PRK10729 nudF ADP-ribose pyrophosphatase NudF; Provisional

Probab=99.75  E-value=1.9e-17  Score=124.38  Aligned_cols=112  Identities=21%  Similarity=0.154  Sum_probs=77.1

Q ss_pred             eEEEEEEEeccCCcccccccccCceEEEEEEeCCCC---------CeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCC
Q 031268           23 LVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNRD---------DLVFPKGGWEDDETVSEAACREALEEAGVRGLLDE   93 (162)
Q Consensus        23 ~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~~~---------~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~   93 (162)
                      -+|++|++..+            +++|||+++.+.+         .|++|+|.+|+|||+++||+|||.||||+.+... 
T Consensus        50 ~~V~il~~~~~------------~~~vlLvrQyR~~~~~~~~~~~~lE~PAG~vd~gE~p~~aA~REL~EETGy~a~~~-  116 (202)
T PRK10729         50 HAAVLLPFDPV------------RDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIVGRT-  116 (202)
T ss_pred             CeEEEEEEECC------------CCEEEEEEeeecccccCCCCCeEEEccceEcCCCCCHHHHHHHHHHHHhCceeeEE-
Confidence            46777778653            2589999985432         3899999999999999999999999999997655 


Q ss_pred             CCeeeEEeecccccccCCCCCCceEEEEEEEEeccc--c---cCCcccccceeEEeeHhHHhhhhccc
Q 031268           94 NPLGEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEE--L---ESWPEQANYKRIWVSNNHFLWRKHSN  156 (162)
Q Consensus        94 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~--~---~~~~~~~~~~~~W~~~~ea~~~~~~~  156 (162)
                      ..++.|.......         ....++|.+.....  .   ....+.+..++.|++++++.+++.++
T Consensus       117 ~~l~~~~~spg~~---------~e~~~~fla~~~~~~~~~~~~~~de~E~i~v~~~~~~e~~~~~~~G  175 (202)
T PRK10729        117 KPVLSYLASPGGT---------SERSSIMVGEVDATTASGIHGLADENEDIRVHVVSREQAYQWVEEG  175 (202)
T ss_pred             EEEEEEEcCCCcC---------ceEEEEEEEEEcchhcccCCCCCCCCCceEEEEEcHHHHHHHHHcC
Confidence            3455443222111         13567777764221  1   11223344679999999999986554

>TIGR00052 nudix-type nucleoside diphosphatase, YffH/AdpP family

Probab=99.75  E-value=1.2e-17  Score=123.90  Aligned_cols=112  Identities=20%  Similarity=0.095  Sum_probs=77.9

Q ss_pred             eEEEEEEEeccCCcccccccccCceEEEEEEeCC---------CCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCC
Q 031268           23 LVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPN---------RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDE   93 (162)
Q Consensus        23 ~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~---------~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~   93 (162)
                      .+|++|++..+            +++|||+++.+         ...|+||||++|+|||+++||+||++||||+.+... 
T Consensus        45 ~~v~vl~~~~~------------~~~vlLvrq~R~~~~~~~~~~~~lelPaG~ve~gE~~~~aA~REl~EEtG~~~~~~-  111 (185)
T TIGR00052        45 NAAAVLLYDPK------------KDTVVLIEQFRIAAYVNGEEPWLLELSAGMVEKGESPEDVARREAIEEAGYQVKNL-  111 (185)
T ss_pred             CeEEEEEEECC------------CCEEEEEECceeeeeecCCcceEEEECcEecCCCCCHHHHHHHHccccccceecce-
Confidence            46777777654            35899999853         124899999999999999999999999999998655 


Q ss_pred             CCeeeEEeecccccccCCCCCCceEEEEEEEEecccc----cCCcccccceeEEeeHhHHhhhhccc
Q 031268           94 NPLGEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEEL----ESWPEQANYKRIWVSNNHFLWRKHSN  156 (162)
Q Consensus        94 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~----~~~~~~~~~~~~W~~~~ea~~~~~~~  156 (162)
                      ..++.+.....         ......++|.+......    ....+.+..+..|++++++.+++.++
T Consensus       112 ~~~~~~~~~~g---------~~~~~~~~f~a~~~~~~~~~~~~~~~~E~ie~~~~~~~e~~~~~~~G  169 (185)
T TIGR00052       112 RKLLSFYSSPG---------GVTELIHLFIAEVDDNQAAGIGGGADEEEIEVLHLVFSQALQWIKEG  169 (185)
T ss_pred             EEEEEEEcCCC---------CCcEEEEEEEEEEchhhcCCCCCCCCccceEEEEeCHHHHHHHHHcC
Confidence            35555432211         11235677877754321    11223344678999999999986554

>cd04694 Nudix_Hydrolase_35 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.75  E-value=3.5e-17  Score=116.74  Aligned_cols=106  Identities=19%  Similarity=0.107  Sum_probs=65.3

Q ss_pred             eEEEEEEeCC-----CCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCC---CCeeeEEeecc--cccccCCCCCCc
Q 031268           47 VLVLMISTPN-----RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDE---NPLGEWEFRSK--SRMNSCNSKEGG  116 (162)
Q Consensus        47 ~~vLLv~r~~-----~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~---~~l~~~~~~~~--~~~~~~~~~~~~  116 (162)
                      ++|||++|..     .+.|.+|||++++||++++||+||++||||+.+....   ..++.+.+...  ......  ....
T Consensus        13 ~~vLl~rr~~~~~~~~g~w~~PgG~v~~~E~~~~aa~RE~~EE~gi~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~   90 (143)
T cd04694          13 QKLLLTRRASSLRIFPNVWVPPGGHVELGENLLEAGLRELNEETGLTLDPIDKSWQVLGLWESVYPPLLSRGLP--KRHH   90 (143)
T ss_pred             CEEEEEEECCCCCCCCCeEECcccccCCCCCHHHHHHHHHHHHHCCCccccccceeEEeeeccccccccCCCcc--ccee
Confidence            4899999963     3569999999999999999999999999999865421   24444432211  111000  0111


Q ss_pred             eEEEEEEEEeccc----cc-CCcccccceeEEeeHhHHhhhhc
Q 031268          117 CRGYMFALEVTEE----LE-SWPEQANYKRIWVSNNHFLWRKH  154 (162)
Q Consensus       117 ~~~~~f~~~~~~~----~~-~~~~~~~~~~~W~~~~ea~~~~~  154 (162)
                      ...++|.......    .. .....+..+++|+++++|.+++.
T Consensus        91 ~~~y~~~~~~~~~~~~~~~~~~~~~Ev~~~~Wv~~~~a~~~~~  133 (143)
T cd04694          91 IVVYILVKSSETHQQLQARLQPDPNEVSAAAWLDKSLAKAVVS  133 (143)
T ss_pred             EEEEEEEEeccccccccccccCChhhccceEeeCHHHHHHHHH
Confidence            2223333222111    01 11123457899999999999864

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd02883 Nudix_Hydrolase Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.75  E-value=2.8e-17  Score=112.08  Aligned_cols=108  Identities=23%  Similarity=0.283  Sum_probs=76.7

Q ss_pred             EEEEEEEeccCCcccccccccCceEEEEEEeCC--CCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeeeEEe
Q 031268           24 VAGCIPYKFEKNDENKNCKMEKKVLVLMISTPN--RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEF  101 (162)
Q Consensus        24 ~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~--~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~~~~  101 (162)
                      ++++|+++.+             +++||+++..  .+.|.||||+++.||++.++|+||+.||+|+..... ...+.+.+
T Consensus         2 ~~~~i~~~~~-------------~~ill~kr~~~~~~~~~~p~G~~~~~e~~~~~a~RE~~EE~Gl~~~~~-~~~~~~~~   67 (123)
T cd02883           2 AVGAVILDED-------------GRVLLVRRADSPGGLWELPGGGVEPGETLEEAAIREVREETGLDVDVL-RLLGVYEV   67 (123)
T ss_pred             ceEEEEECCC-------------CCEEEEEEcCCCCCeEeCCcccccCCCCHHHHHHHHHHHhhCccceee-eEEEEEEe
Confidence            4667776653             4899999987  688999999999999999999999999999987533 34555554


Q ss_pred             ecccccccCCCCCCceEEEEEEEEecccccC-CcccccceeEEeeHhHHhhh
Q 031268          102 RSKSRMNSCNSKEGGCRGYMFALEVTEELES-WPEQANYKRIWVSNNHFLWR  152 (162)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~-~~~~~~~~~~W~~~~ea~~~  152 (162)
                      .....       ......++|.+........ ..+.+....+|++++++.+.
T Consensus        68 ~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~w~~~~~l~~~  112 (123)
T cd02883          68 ESPDE-------GEHAVVFVFLARLVGGEPTLLPPDEISEVRWVTLDELPAL  112 (123)
T ss_pred             eccCC-------CceEEEEEEEEEeCCCCcCCCCCCccceEEEEcHHHCccc
Confidence            43211       1234567777766543221 22333467899999999875

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzy

>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional

Probab=99.75  E-value=3.2e-17  Score=131.99  Aligned_cols=112  Identities=22%  Similarity=0.202  Sum_probs=73.7

Q ss_pred             ceeEEEEEEEeccCCcccccccccCceEEEEEEeCC---CCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCee
Q 031268           21 LRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPN---RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLG   97 (162)
Q Consensus        21 ~r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~---~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~   97 (162)
                      ...+|++|+++.              ++|||++|..   .+.|.||||++|+|||+++||+||++||||+++... ...+
T Consensus       202 ~~vtv~avv~~~--------------g~VLLvrR~~~p~~g~W~lPGG~ve~gEt~~~Aa~REl~EETGl~v~~~-~l~~  266 (340)
T PRK05379        202 TFVTVDAVVVQS--------------GHVLLVRRRAEPGKGLWALPGGFLEQDETLLDACLRELREETGLKLPEP-VLRG  266 (340)
T ss_pred             cceEEEEEEEEC--------------CEEEEEEecCCCCCCeEECCcccCCCCCCHHHHHHHHHHHHHCCccccc-ccce
Confidence            357888888763              3899999864   466999999999999999999999999999986543 2233


Q ss_pred             eE----EeecccccccCCCCCCceEEEEEEEEeccc-cc-CCcccccceeEEeeHhHHhhh
Q 031268           98 EW----EFRSKSRMNSCNSKEGGCRGYMFALEVTEE-LE-SWPEQANYKRIWVSNNHFLWR  152 (162)
Q Consensus        98 ~~----~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~-~~-~~~~~~~~~~~W~~~~ea~~~  152 (162)
                      .+    .+......     .......++|.+..... .. ....++..+++|++++++..+
T Consensus       267 ~~~~~~~f~~p~r~-----~~~~~i~~~f~~~~~~~~~~~~~~~de~~~~~W~~~~el~~~  322 (340)
T PRK05379        267 SIRDQQVFDHPGRS-----LRGRTITHAFLFEFPAGELPRVKGGDDADKARWVPLAELLAM  322 (340)
T ss_pred             eeeeeEEEcCCCCC-----CCCcEEEEEEEEEecCCccCccCCCCceeeEEEEEHHHhhhh
Confidence            22    11111100     11223445555544322 11 123344579999999999863

>PRK00241 nudC NADH pyrophosphatase; Reviewed

Probab=99.74  E-value=9.6e-18  Score=130.08  Aligned_cols=95  Identities=15%  Similarity=0.125  Sum_probs=68.9

Q ss_pred             eEEEEEEeCC--CCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeeeEEeecccccccCCCCCCceEEEEEEE
Q 031268           47 VLVLMISTPN--RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMFAL  124 (162)
Q Consensus        47 ~~vLLv~r~~--~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~  124 (162)
                      ++|||+++..  .+.|.+|||++|+|||+++||+||++||||+++... ..++.+.+...           ....+.|.+
T Consensus       143 ~~iLL~rr~~~~~g~wslPgG~vE~GEs~eeAa~REv~EEtGl~v~~~-~~~~s~~~~~p-----------~~lm~~f~a  210 (256)
T PRK00241        143 DEILLARHPRHRNGVYTVLAGFVEVGETLEQCVAREVMEESGIKVKNL-RYVGSQPWPFP-----------HSLMLGFHA  210 (256)
T ss_pred             CEEEEEEccCCCCCcEeCcccCCCCCCCHHHHhhhhhhhccCceeeee-EEEEeEeecCC-----------CeEEEEEEE
Confidence            5899999864  467999999999999999999999999999997655 45555443221           124556766


Q ss_pred             EecccccCCcccccceeEEeeHhHHhhhh
Q 031268          125 EVTEELESWPEQANYKRIWVSNNHFLWRK  153 (162)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~W~~~~ea~~~~  153 (162)
                      ..........+.+..+++||+++|+..+.
T Consensus       211 ~~~~~~~~~~~~Ei~~a~W~~~del~~lp  239 (256)
T PRK00241        211 DYDSGEIVFDPKEIADAQWFRYDELPLLP  239 (256)
T ss_pred             EecCCcccCCcccEEEEEEECHHHCcccC
Confidence            65432222233455789999999998763

>cd04685 Nudix_Hydrolase_26 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.73  E-value=6.4e-17  Score=114.06  Aligned_cols=108  Identities=22%  Similarity=0.273  Sum_probs=72.5

Q ss_pred             EEEEEEEeccCCcccccccccCceEEEEEEeCC-----CCCeeeCCCccCCCCCHHHHHHHHHHHHhCccc-ccCCCCee
Q 031268           24 VAGCIPYKFEKNDENKNCKMEKKVLVLMISTPN-----RDDLVFPKGGWEDDETVSEAACREALEEAGVRG-LLDENPLG   97 (162)
Q Consensus        24 ~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~-----~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~-~~~~~~l~   97 (162)
                      ++++++++.+             ++|||+++..     .+.|.+|||++++|||+.+||.||++||||+.+ ... ..+.
T Consensus         2 ~~~~~i~~~~-------------g~vLl~r~~~~~~~~~~~w~~PgG~ve~gE~~~~a~~Re~~EE~G~~~~~~~-~~~~   67 (133)
T cd04685           2 AARVVLLDPD-------------DRVLLLRGDDPDSPGPDWWFTPGGGVEPGESPEQAARRELREETGITVADLG-PPVW   67 (133)
T ss_pred             eEEEEEEcCC-------------CeEEEEEEeCCCCCCCCEEECCcCCCCCCCCHHHHHHHHHHHHHCCcccccc-ceEE
Confidence            5778888765             4899998753     246999999999999999999999999999987 443 3333


Q ss_pred             eEE--eecccccccCCCCCCceEEEEEEEEecccc---cCC--cc-cccceeEEeeHhHHhhh
Q 031268           98 EWE--FRSKSRMNSCNSKEGGCRGYMFALEVTEEL---ESW--PE-QANYKRIWVSNNHFLWR  152 (162)
Q Consensus        98 ~~~--~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~---~~~--~~-~~~~~~~W~~~~ea~~~  152 (162)
                      ...  +.....       ......++|.+......   ..+  .+ .....++|++++++.+.
T Consensus        68 ~~~~~f~~~~~-------~~~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~~~~W~~~~el~~~  123 (133)
T cd04685          68 RRDAAFTFLGV-------DGRQEERFFLARTPRTEPSPAGWTALERRSILGWRWWTRAELAAT  123 (133)
T ss_pred             EEEEEEEecCc-------cceeeEEEEEEEcCCccccCCCCChhhhhhcccccCCCHHHHhhC
Confidence            222  221111       11234567877665321   111  11 12357899999999874

Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK10776 nucleoside triphosphate pyrophosphohydrolase; Provisional

Probab=99.73  E-value=8.2e-17  Score=111.71  Aligned_cols=94  Identities=20%  Similarity=0.203  Sum_probs=64.8

Q ss_pred             eEEEEEEeCCC----CCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeeeEEeecccccccCCCCCCceEEEEE
Q 031268           47 VLVLMISTPNR----DDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMF  122 (162)
Q Consensus        47 ~~vLLv~r~~~----~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f  122 (162)
                      ++|||++|...    +.|+||||++++|||+.+||.||++||||+.+... ..++.+.+.....         ....++|
T Consensus        16 ~~vll~rR~~~~~~~g~w~~PgG~~~~gE~~~~a~~Re~~EE~gl~~~~~-~~~~~~~~~~~~~---------~~~~~~~   85 (129)
T PRK10776         16 NEIFITRRAADAHMAGKWEFPGGKIEAGETPEQALIRELQEEVGITVQHA-TLFEKLEYEFPDR---------HITLWFW   85 (129)
T ss_pred             CEEEEEEecCCCCCCCeEECCceecCCCCCHHHHHHHHHHHHHCCceecc-eEEEEEEeeCCCc---------EEEEEEE
Confidence            48999998653    67999999999999999999999999999986544 3455544333211         1234556


Q ss_pred             EEEecccccCCcccccceeEEeeHhHHhhh
Q 031268          123 ALEVTEELESWPEQANYKRIWVSNNHFLWR  152 (162)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~W~~~~ea~~~  152 (162)
                      .+.......  ...+..+.+|++++++...
T Consensus        86 ~~~~~~~~~--~~~e~~~~~W~~~~~l~~~  113 (129)
T PRK10776         86 LVESWEGEP--WGKEGQPGRWVSQVALNAD  113 (129)
T ss_pred             EEEEECCcc--CCccCCccEEecHHHCccC
Confidence            554322111  1223467899999999875

>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1

Probab=99.72  E-value=9.5e-17  Score=116.28  Aligned_cols=114  Identities=15%  Similarity=0.011  Sum_probs=75.2

Q ss_pred             cCceeEEEEEEEeccCCcccccccccCceEEEEEEeCCC-----CCeeeC-CCccCCCCCHHHHHHHHHHHHhCcccccC
Q 031268           19 DQLRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNR-----DDLVFP-KGGWEDDETVSEAACREALEEAGVRGLLD   92 (162)
Q Consensus        19 ~~~r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~~-----~~W~lP-gG~ve~gEt~~eaa~REl~EEtGl~~~~~   92 (162)
                      +-++.++++++++.+             ++|||.+|...     +.|++| ||+++.||  .+||+||++|||||.+...
T Consensus        24 g~~h~~v~v~v~~~~-------------g~vLl~kR~~~k~~~PG~W~~~~gG~v~~GE--~eaa~REl~EE~Gl~~~~~   88 (158)
T TIGR02150        24 TPLHRAFSVFLFNEE-------------GQLLLQRRALSKITWPGVWTNSCCSHPLPGE--LEAAIRRLREELGIPADDV   88 (158)
T ss_pred             CCeEEEEEEEEEcCC-------------CeEEEEeccCCCcCCCCCccccccCCCCccc--HHHHHHHHHHHHCCCcccc
Confidence            455677777777654             48999988642     679887 79999999  4999999999999987644


Q ss_pred             C-CCeeeEEeecccccccCCCCCCceEEEEEEEEecccccCCcccccceeEEeeHhHHhhhhc
Q 031268           93 E-NPLGEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWVSNNHFLWRKH  154 (162)
Q Consensus        93 ~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~W~~~~ea~~~~~  154 (162)
                      . ..++.+.|......      ......++|.+..... ......+..+++|++++|+.+++.
T Consensus        89 ~l~~~~~~~~~~~~~~------g~~~~~~~f~~~~~~~-~~~~~~Ev~~~~W~~~~el~~~~~  144 (158)
T TIGR02150        89 PLTVLPRFSYRARDAW------GEHELCPVFFARAPVP-LNPNPEEVAEYRWVSLEELKEILK  144 (158)
T ss_pred             ceEEcceEEEEEecCC------CcEEEEEEEEEecCCc-ccCChhHeeeEEEeCHHHHHHHHh
Confidence            1 12333333322110      0123456676655432 222233568899999999998864

This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.

>TIGR02705 nudix_YtkD nucleoside triphosphatase YtkD

Probab=99.71  E-value=2.7e-16  Score=113.30  Aligned_cols=93  Identities=27%  Similarity=0.211  Sum_probs=67.8

Q ss_pred             EEEEEEeCCCCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeeeEEeecccccccCCCCCCceEEEEEEEEec
Q 031268           48 LVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMFALEVT  127 (162)
Q Consensus        48 ~vLLv~r~~~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~  127 (162)
                      ++||+++... .|+||||++|+|||+++||+||++||||+.+... ..++.|......         .....++|.+...
T Consensus        36 ~~LL~~~~~~-~~elPgG~vE~gEt~~eaA~REl~EETG~~~~~~-~~lg~~~~~~~~---------~~~~~~vf~A~~~  104 (156)
T TIGR02705        36 QWLLTEHKRR-GLEFPGGKVEPGETSKEAAIREVMEETGAIVKEL-HYIGQYEVEGES---------TDFVKDVYFAEVS  104 (156)
T ss_pred             EEEEEEEcCC-cEECCceecCCCCCHHHHHHHHHHHHhCcEeeee-EEEEEEEecCCC---------cEEEEEEEEEEEe
Confidence            7999988754 5999999999999999999999999999998766 578877654322         1224566777665


Q ss_pred             ccccCCcccccceeE-EeeHhHHhhhhc
Q 031268          128 EELESWPEQANYKRI-WVSNNHFLWRKH  154 (162)
Q Consensus       128 ~~~~~~~~~~~~~~~-W~~~~ea~~~~~  154 (162)
                      .. ...  .+..+.. +++++++.+++.
T Consensus       105 ~~-~~~--~e~~E~~~~~~~~~~~~~~~  129 (156)
T TIGR02705       105 AL-ESK--DDYLETKGPVLLQEIPDIIK  129 (156)
T ss_pred             cc-ccC--CCceeeEeEEEHHHHHHHHh
Confidence            32 222  2234555 799999988743

The functional assignment to the proteins of this family is contentious. Reference challenges the findings of reference, both in interpretation and in enzyme assay results. This protein belongs to the nudix family and shares some sequence identity with E. coli MutT but appears not to be functionally interchangeable with it.

>cd03425 MutT_pyrophosphohydrolase The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi)

Probab=99.71  E-value=2.9e-16  Score=107.83  Aligned_cols=94  Identities=21%  Similarity=0.182  Sum_probs=67.3

Q ss_pred             eEEEEEEeCC----CCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeeeEEeecccccccCCCCCCceEEEEE
Q 031268           47 VLVLMISTPN----RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMF  122 (162)
Q Consensus        47 ~~vLLv~r~~----~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f  122 (162)
                      +++||++|..    .+.|.||||+++++|+++++|.||+.||||+..... ..++.+.+.....         ....++|
T Consensus        13 ~~~Ll~~r~~~~~~~g~w~~p~G~~~~~e~~~~~a~Re~~EE~g~~~~~~-~~~~~~~~~~~~~---------~~~~~~~   82 (124)
T cd03425          13 GRILIAQRPAGKHLGGLWEFPGGKVEPGETPEQALVRELREELGIEVEVG-ELLATVEHDYPDK---------RVTLHVF   82 (124)
T ss_pred             CEEEEEEeCCCCCCCCeEeCCCcccCCCCCHHHHHHHHHHHhhCcEEecc-ceEEEEEeeCCCC---------eEEEEEE
Confidence            5899998864    356999999999999999999999999999987654 4566655433211         2245666


Q ss_pred             EEEecccccCCcccccceeEEeeHhHHhhh
Q 031268          123 ALEVTEELESWPEQANYKRIWVSNNHFLWR  152 (162)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~W~~~~ea~~~  152 (162)
                      .+.......  ...+...+.|++++++..+
T Consensus        83 ~~~~~~~~~--~~~e~~~~~W~~~~el~~~  110 (124)
T cd03425          83 LVELWSGEP--QLLEHQELRWVPPEELDDL  110 (124)
T ss_pred             EEeeeCCCc--ccccCceEEEeeHHHcccC
Confidence            655432211  1223468899999999876

This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.

>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.70  E-value=6.2e-16  Score=114.14  Aligned_cols=124  Identities=15%  Similarity=0.128  Sum_probs=79.1

Q ss_pred             cCceeEEEEEEEeccCCcccccccccCceEEEEEEeCCC-----CCe-eeCCCccCCCCCHHHHHHHHHHHHhCcccccC
Q 031268           19 DQLRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNR-----DDL-VFPKGGWEDDETVSEAACREALEEAGVRGLLD   92 (162)
Q Consensus        19 ~~~r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~~-----~~W-~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~   92 (162)
                      +-++.++-+.+|..+..         +.++|++.+|...     +.| .+|||++++|||+.+||+||++||||+.....
T Consensus        29 g~~h~~v~~~~~~~~~~---------~~~~l~lqrRs~~K~~~Pg~wd~~~~G~v~~gE~~~~aA~REl~EE~Gl~~~~~   99 (180)
T cd03676          29 GLVTYGVHLNGYVRDED---------GGLRIWIPRRSPTKATWPGMLDNLVAGGLGHGEGPEETLVKECDEEAGLPEDLV   99 (180)
T ss_pred             CceEEEEEEEEEEEcCC---------CCeEEEEEeccCCCCCCCCceeeecccCCCCCCCHHHHHHHHHHHHhCCCHHHH
Confidence            44456666556654420         1478888888542     568 69999999999999999999999999986543


Q ss_pred             C--CCeeeEEeecc-cccccCCCCCCceEEEEEEEEecccc-cCCcccccceeEEeeHhHHhhhhccc
Q 031268           93 E--NPLGEWEFRSK-SRMNSCNSKEGGCRGYMFALEVTEEL-ESWPEQANYKRIWVSNNHFLWRKHSN  156 (162)
Q Consensus        93 ~--~~l~~~~~~~~-~~~~~~~~~~~~~~~~~f~~~~~~~~-~~~~~~~~~~~~W~~~~ea~~~~~~~  156 (162)
                      .  ..++.+.|... ...     .......++|.+...... ....+.+..++.|++++|+.+++..+
T Consensus       100 ~~l~~~g~~~~~~~~~~~-----~~~~e~~~~f~~~~~~~~~~~~~~~Ev~~~~~~~~~el~~~l~~g  162 (180)
T cd03676         100 RQLKPVGVVSYLREGEAG-----GLQPEVEYVYDLELPPDFIPAPQDGEVESFRLLTIDEVLRALKEG  162 (180)
T ss_pred             hhceeccEEEEEEEcCCC-----cEeeeEEEEEEEEcCCCCeeCCCCCcEeEEEEECHHHHHHHHHcC
Confidence            1  23454443322 111     011124566766543221 12233445789999999999987553

Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe

>PRK10707 putative NUDIX hydrolase; Provisional

Probab=99.69  E-value=4.6e-16  Score=115.85  Aligned_cols=112  Identities=17%  Similarity=0.084  Sum_probs=73.5

Q ss_pred             ceeEEEEEEEeccCCcccccccccCceEEEEEEeCC-----CCCeeeCCCccCCC-CCHHHHHHHHHHHHhCcccccCCC
Q 031268           21 LRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPN-----RDDLVFPKGGWEDD-ETVSEAACREALEEAGVRGLLDEN   94 (162)
Q Consensus        21 ~r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~-----~~~W~lPgG~ve~g-Et~~eaa~REl~EEtGl~~~~~~~   94 (162)
                      .+.+|.+|++..++           ++.|||++|..     .+.|+||||++|++ ||+++||+||++||||+..... .
T Consensus        29 ~~~aavvl~l~~~~-----------~~~vLl~~R~~~~r~~~G~~~~PGG~~e~~de~~~~tA~REl~EEtGl~~~~~-~   96 (190)
T PRK10707         29 QRQAAVLIPIVRRP-----------QPTLLLTQRSIHLRKHAGQVAFPGGAVDPTDASLIATALREAQEEVAIPPSAV-E   96 (190)
T ss_pred             CCCeEEEEEEEECC-----------CCEEEEEEeCCcccCCCCcEEcCCcccCCCcccHHHHHHHHHHHHHCCCccce-E
Confidence            45677777776442           35888888642     35699999999985 6899999999999999997666 4


Q ss_pred             CeeeEEeecccccccCCCCCCceEEEEEEEEecccccCCc-ccccceeEEeeHhHHhhhh
Q 031268           95 PLGEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEELESWP-EQANYKRIWVSNNHFLWRK  153 (162)
Q Consensus        95 ~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~-~~~~~~~~W~~~~ea~~~~  153 (162)
                      .++.+........         ..+..|.+.+.......+ +++..++.|++++++.++.
T Consensus        97 ~lg~l~~~~~~~~---------~~~~~~v~~~~~~~~~~~d~~Ev~~v~~vpl~e~~~~~  147 (190)
T PRK10707         97 VIGVLPPVDSSTG---------YQVTPVVGIIPPDLPYRANEDEVAAVFEMPLAEALHLG  147 (190)
T ss_pred             EEEEeeeeeccCC---------cEEEEEEEEECCCCCCCCChhhhheEEEEeHHHHhCcc
Confidence            6776642221111         123333333322222222 2345789999999998874

>TIGR00586 mutt mutator mutT protein

Probab=99.69  E-value=5.3e-16  Score=107.75  Aligned_cols=94  Identities=16%  Similarity=0.054  Sum_probs=64.9

Q ss_pred             eEEEEEEeCCC----CCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeeeEEeecccccccCCCCCCceEEEEE
Q 031268           47 VLVLMISTPNR----DDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMF  122 (162)
Q Consensus        47 ~~vLLv~r~~~----~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f  122 (162)
                      ++|||.+|...    +.|+||||++++|||+++|++||+.||||+.+... ..++.+.+.....         ....++|
T Consensus        16 ~~vLl~~R~~~~~~~g~w~~Pgg~ve~ge~~~~~~~RE~~EE~g~~~~~~-~~~~~~~h~~~~~---------~~~~~~~   85 (128)
T TIGR00586        16 GEIIITRRADGHMFAKLLEFPGGKEEGGETPEQAVVRELEEEIGIPQHFS-EFEKLEYEFYPRH---------ITLWFWL   85 (128)
T ss_pred             CEEEEEEEeCCCCCCCeEECCCcccCCCCCHHHHHHHHHHHHHCCcceee-eEEEEEEEECCCc---------EEEEEEE
Confidence            48999988643    57999999999999999999999999999987654 3455544332211         1245566


Q ss_pred             EEEecccccCCcccccceeEEeeHhHHhhh
Q 031268          123 ALEVTEELESWPEQANYKRIWVSNNHFLWR  152 (162)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~W~~~~ea~~~  152 (162)
                      .+...+....  ..+...++|++++++.++
T Consensus        86 ~~~~~~~~~~--~~~~~~~~W~~~~~l~~~  113 (128)
T TIGR00586        86 LERWEGGPPG--KEGQPEEWWVLVGLLADD  113 (128)
T ss_pred             EEEEcCCCcC--cccccccEEeCHHHCCcc
Confidence            5554332111  122357899999999876

All proteins in this family for which functions are known are involved in repairing oxidative damage to dGTP (they are 8-oxo-dGTPases). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK15009 GDP-mannose pyrophosphatase NudK; Provisional

Probab=99.67  E-value=9.8e-16  Score=114.14  Aligned_cols=111  Identities=17%  Similarity=0.049  Sum_probs=75.4

Q ss_pred             eEEEEEEEeccCCcccccccccCceEEEEEEeCCCC--------C--eeeCCCccCCCCCHHHHHHHHHHHHhCcccccC
Q 031268           23 LVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNRD--------D--LVFPKGGWEDDETVSEAACREALEEAGVRGLLD   92 (162)
Q Consensus        23 ~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~~~--------~--W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~   92 (162)
                      .+|++|++..+            .++|||+++.+.+        .  |++|+|.+|+| +|++||+||+.||||+.+...
T Consensus        46 ~~v~Vl~~~~~------------~~~vvLvrQyR~~v~~~~~~~~~~lElPAG~vd~~-~p~~aA~REL~EETGy~a~~~  112 (191)
T PRK15009         46 NGATILLYNAK------------KKTVVLIRQFRVATWVNGNESGQLIETCAGLLDND-EPEVCIRKEAIEETGYEVGEV  112 (191)
T ss_pred             CEEEEEEEECC------------CCEEEEEEcccccccccCCCCceEEEEeccccCCC-CHHHHHHHHHHHhhCCccceE
Confidence            46777777653            3589999985432        2  89999999976 799999999999999987655


Q ss_pred             CCCeeeEEeecccccccCCCCCCceEEEEEEEEeccc--cc--CCcccccceeEEeeHhHHhhhhccc
Q 031268           93 ENPLGEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEE--LE--SWPEQANYKRIWVSNNHFLWRKHSN  156 (162)
Q Consensus        93 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~--~~--~~~~~~~~~~~W~~~~ea~~~~~~~  156 (162)
                       ..++.+. .+....        ....++|.+.....  ..  ...+.+..++.|++++|+.+++.++
T Consensus       113 -~~l~~~~-~spG~s--------~e~~~lf~a~~~~~~~~~~~~~de~E~iev~~~~~~e~~~~i~~G  170 (191)
T PRK15009        113 -RKLFELY-MSPGGV--------TELIHFFIAEYSDSQRANAGGGVEDEDIEVLELPFSQALEMIKTG  170 (191)
T ss_pred             -EEeeEEE-cCCccc--------CcEEEEEEEEECchhcccCCCCCCCceEEEEEEcHHHHHHHHHcC
Confidence             3555542 222111        12567777765321  11  1123344689999999999987554

>cd04663 Nudix_Hydrolase_6 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.64  E-value=4.1e-15  Score=103.64  Aligned_cols=43  Identities=33%  Similarity=0.376  Sum_probs=38.0

Q ss_pred             ceEEEEEEeCCCCCeeeCCCccCCCCCHHHHHHHHHHHHhCccc
Q 031268           46 KVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVRG   89 (162)
Q Consensus        46 ~~~vLLv~r~~~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~   89 (162)
                      +.+||+++... +.|.||||++++|||+.+||+||++||||+.+
T Consensus        13 ~~~ll~~r~~~-~~~~lPgG~ve~~E~~~~aa~Rel~EEtGl~~   55 (126)
T cd04663          13 VLELLVFEHPL-AGFQIVKGTVEPGETPEAAALRELQEESGLPS   55 (126)
T ss_pred             eEEEEEEEcCC-CcEECCCccCCCCCCHHHHHHHHHHHHHCCee
Confidence            46777776655 56999999999999999999999999999986

Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V) which functions as metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are

>cd03670 ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P

Probab=99.63  E-value=5.7e-15  Score=109.24  Aligned_cols=45  Identities=24%  Similarity=0.266  Sum_probs=41.6

Q ss_pred             cCceEEEEEEeCCCCCeeeCCCccCCCCCHHHHHHHHHHHHhCcc
Q 031268           44 EKKVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVR   88 (162)
Q Consensus        44 ~~~~~vLLv~r~~~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~   88 (162)
                      ....+||+++|...+.|.||||++++|||+.+||+||++||||+.
T Consensus        46 ~~~l~vLl~~r~~~g~walPGG~v~~~E~~~~aa~Rel~EEt~l~   90 (186)
T cd03670          46 KPILQFVAIKRPDSGEWAIPGGMVDPGEKISATLKREFGEEALNS   90 (186)
T ss_pred             CCeeEEEEEEeCCCCcCcCCeeeccCCCCHHHHHHHHHHHHHccc
Confidence            357899999999889999999999999999999999999999765

Like other members of the Nudix hydrolase superfamily of enzymes, it is thought to require a divalent cation, such as Mg2+, for its activity. It also contains a 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). ADPRase-m is also known as NUDT9. It can be distinugished from the cytosolic ADPRase by a N-terminal target sequence unique to mitochondrial ADPRase. NUDT9 functions as a monomer.

>cd04674 Nudix_Hydrolase_16 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.61  E-value=1.4e-14  Score=100.01  Aligned_cols=44  Identities=39%  Similarity=0.361  Sum_probs=37.6

Q ss_pred             EEEEEEeCC---CCCeeeCCCccCCCCCHHHHHHHHHHHHhCccccc
Q 031268           48 LVLMISTPN---RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLL   91 (162)
Q Consensus        48 ~vLLv~r~~---~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~   91 (162)
                      .+||++|..   .+.|.||||++|+|||+++||.||++||||+++..
T Consensus        16 ~~lL~~r~~~~~~~~w~lPgG~ve~~E~~~~aa~REl~EE~g~~~~~   62 (118)
T cd04674          16 GLLVIRRGIEPGRGKLALPGGFIELGETWQDAVARELLEETGVAVDP   62 (118)
T ss_pred             CEEEEEeecCCCCCeEECCceecCCCCCHHHHHHHHHHHHHCCcccc
Confidence            367776643   36799999999999999999999999999998753

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK08999 hypothetical protein; Provisional

Probab=99.59  E-value=2e-14  Score=114.46  Aligned_cols=94  Identities=21%  Similarity=0.196  Sum_probs=65.0

Q ss_pred             eEEEEEEeCC----CCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeeeEEeecccccccCCCCCCceEEEEE
Q 031268           47 VLVLMISTPN----RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMF  122 (162)
Q Consensus        47 ~~vLLv~r~~----~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f  122 (162)
                      ++|||.+|..    .+.|+||||++++||++.+||.||++||||+.+... ..++.+.+.....         ....++|
T Consensus        17 ~~vLL~kR~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~-~~l~~~~h~~~~~---------~~~i~~y   86 (312)
T PRK08999         17 GRILLARRPEGKHQGGLWEFPGGKVEPGETVEQALARELQEELGIEVTAA-RPLITVRHDYPDK---------RVRLDVR   86 (312)
T ss_pred             CeEEEEEecCCCCCCCeEECCccCCCCCCCHHHHHHHHHHHHhCCceecc-eeEEEEEEEcCCC---------eEEEEEE
Confidence            4899998864    357999999999999999999999999999987654 3455544332211         1245566


Q ss_pred             EEEecccccCCcccccceeEEeeHhHHhhh
Q 031268          123 ALEVTEELESWPEQANYKRIWVSNNHFLWR  152 (162)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~W~~~~ea~~~  152 (162)
                      .+......  ....+...++|++++++.++
T Consensus        87 ~~~~~~~~--~~~~e~~~~~Wv~~~el~~~  114 (312)
T PRK08999         87 RVTAWQGE--PHGREGQPLAWVAPDELAVY  114 (312)
T ss_pred             EEEEecCc--ccCccCCccEEecHHHcccC
Confidence            55432211  11223467899999998875

>PLN02709 nudix hydrolase

Probab=99.56  E-value=3.8e-14  Score=107.17  Aligned_cols=118  Identities=15%  Similarity=0.084  Sum_probs=74.2

Q ss_pred             cCceeEEEEEEEeccCCcccccccccCceEEEEEEeCC-----CCCeeeCCCccCCCC-CHHHHHHHHHHHHhCcccccC
Q 031268           19 DQLRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPN-----RDDLVFPKGGWEDDE-TVSEAACREALEEAGVRGLLD   92 (162)
Q Consensus        19 ~~~r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~-----~~~W~lPgG~ve~gE-t~~eaa~REl~EEtGl~~~~~   92 (162)
                      ..+|.++..|++...+.      ..+++.+|||++|..     .|.|+||||++|++| ++.+||+||+.||+||.....
T Consensus        29 ~~~r~AAVLv~l~~~~~------~~~~~~~vLl~~Rs~~l~~h~GqiafPGG~~e~~D~~~~~tAlRE~~EEiGl~~~~v  102 (222)
T PLN02709         29 FPAKSSAVLVCLYQEQR------EDKNELRVILTKRSSTLSSHPGEVALPGGKRDEEDKDDIATALREAREEIGLDPSLV  102 (222)
T ss_pred             CCCCccEEEEEEeeccC------CCCCceEEEEEEcCCCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHHHCCCchhe
Confidence            34566666666654210      001357899999964     367999999999974 799999999999999986544


Q ss_pred             CCCeeeEEeecccccccCCCCCCceEEEEEEEEecc--ccc-CCcccccceeEEeeHhHHhhh
Q 031268           93 ENPLGEWEFRSKSRMNSCNSKEGGCRGYMFALEVTE--ELE-SWPEQANYKRIWVSNNHFLWR  152 (162)
Q Consensus        93 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~--~~~-~~~~~~~~~~~W~~~~ea~~~  152 (162)
                       ..+|.++......         ...++-|.+.+..  ... .....|..++.|++++.+++.
T Consensus       103 -~vlg~L~~~~t~s---------g~~V~P~V~~~~~~~~~~~~~np~EV~~vf~vPL~~ll~~  155 (222)
T PLN02709        103 -TIISVLEPFVNKK---------GMSVAPVIGFLHDKKAFKPLPNPAEVEEIFDVPLEMFLKD  155 (222)
T ss_pred             -EEeeecCCeECCC---------CCEEEEEEEEecCCCCccccCChhhhheeEEecHHHHhCC
Confidence             3556543222111         1134444443432  111 112234578999999998764

>COG0494 MutT NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]

Probab=99.48  E-value=4.2e-13  Score=93.69  Aligned_cols=102  Identities=25%  Similarity=0.259  Sum_probs=63.3

Q ss_pred             eEEEEEEeCCCC-CeeeCCCccCCCCCHHH-HHHHHHHHHhCccccc--CCCCeeeEEeecccccccCCCCCCceEEEEE
Q 031268           47 VLVLMISTPNRD-DLVFPKGGWEDDETVSE-AACREALEEAGVRGLL--DENPLGEWEFRSKSRMNSCNSKEGGCRGYMF  122 (162)
Q Consensus        47 ~~vLLv~r~~~~-~W~lPgG~ve~gEt~~e-aa~REl~EEtGl~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f  122 (162)
                      .+||+.+++... .|.||||++|+||++.+ ||+||++||||+....  . ..++.+.........    ........++
T Consensus        24 ~~vl~~~~~~~~~~~~~PgG~ve~~e~~~~~aa~RE~~EEtGl~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~~~~~   98 (161)
T COG0494          24 GEVLLAQRRDDGGLWELPGGKVEPGEELPEEAAARELEEETGLRVKDERL-ELLGEFPPSPGDGSS----VGGREHRVFF   98 (161)
T ss_pred             CEEeEEEccccCCceecCCcccCCCCchHHHHHHHHHHHHhCCeeeeecc-eeeeeccCcccCccc----ccceEEEEEE
Confidence            589999998776 89999999999999888 9999999999999763  3 344444332221110    0001122222


Q ss_pred             EEEecccc--c--CC--cccccceeEEeeHhHHhhhh
Q 031268          123 ALEVTEEL--E--SW--PEQANYKRIWVSNNHFLWRK  153 (162)
Q Consensus       123 ~~~~~~~~--~--~~--~~~~~~~~~W~~~~ea~~~~  153 (162)
                      ........  .  ..  ...+...+.|++++++....
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~  135 (161)
T COG0494          99 VAEVDDSLAVAIEGLSAPSEELEDLEWVPLDELAALV  135 (161)
T ss_pred             eeeccccccccccccCCCcchhhceeeeeHHHccccc
Confidence            22211111  1  11  01345789999999988763

>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]

Probab=99.45  E-value=9.8e-14  Score=107.35  Aligned_cols=96  Identities=20%  Similarity=0.143  Sum_probs=66.6

Q ss_pred             EEEEEEeCC--CCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeeeEEeecccccccCCCCCCceEEEEEEEE
Q 031268           48 LVLMISTPN--RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMFALE  125 (162)
Q Consensus        48 ~vLLv~r~~--~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~  125 (162)
                      ++||.++..  .+.+.+-.|+||+|||+++|+.||++||+|+++... ..+++..|+....           .+.-|.+.
T Consensus       156 ~ilLa~~~~h~~g~yS~LAGFVE~GETlE~AV~REv~EE~Gi~V~~v-rY~~SQPWPfP~S-----------LMigf~ae  223 (279)
T COG2816         156 EILLARHPRHFPGMYSLLAGFVEPGETLEQAVAREVFEEVGIKVKNV-RYVGSQPWPFPHS-----------LMLGFMAE  223 (279)
T ss_pred             ceeecCCCCCCCcceeeeeecccCCccHHHHHHHHHHHhhCeEEeee-eEEeccCCCCchh-----------hhhhheee
Confidence            588887754  467999999999999999999999999999998766 4556544444321           22223343


Q ss_pred             ecccccCCcccccceeEEeeHhHHhhhhcc
Q 031268          126 VTEELESWPEQANYKRIWVSNNHFLWRKHS  155 (162)
Q Consensus       126 ~~~~~~~~~~~~~~~~~W~~~~ea~~~~~~  155 (162)
                      +....-...+.|..+++||+.+|++.++.+
T Consensus       224 y~sgeI~~d~~Eleda~WFs~~evl~~L~~  253 (279)
T COG2816         224 YDSGEITPDEGELEDARWFSRDEVLPALPP  253 (279)
T ss_pred             eccccccCCcchhhhccccCHhHHhhhcCC
Confidence            333222223345678999999997776543

>PLN03143 nudix hydrolase; Provisional

Probab=99.44  E-value=2.9e-12  Score=100.75  Aligned_cols=45  Identities=22%  Similarity=0.268  Sum_probs=37.9

Q ss_pred             ceEEEEEEeCCC----CCeeeCCCccCC-CCCHHHHHHHHHHHHhCcccc
Q 031268           46 KVLVLMISTPNR----DDLVFPKGGWED-DETVSEAACREALEEAGVRGL   90 (162)
Q Consensus        46 ~~~vLLv~r~~~----~~W~lPgG~ve~-gEt~~eaa~REl~EEtGl~~~   90 (162)
                      +.+|||+++.+.    ..|+||+|.+|+ +|++.+||+||++||||+.+.
T Consensus       142 e~~VlLVrQ~R~pvg~~~lE~PAG~lD~~~edp~~aA~REL~EETG~~~~  191 (291)
T PLN03143        142 ETYAVLTEQVRVPVGKFVLELPAGMLDDDKGDFVGTAVREVEEETGIKLK  191 (291)
T ss_pred             CEEEEEEEeEecCCCcEEEEecccccCCCCCCHHHHHHHHHHHHHCCccc
Confidence            456999998652    248999999998 589999999999999999753

>COG4119 Predicted NTP pyrophosphohydrolase [DNA replication, recombination, and repair / General function prediction only]

Probab=99.39  E-value=2.8e-12  Score=87.75  Aligned_cols=69  Identities=29%  Similarity=0.305  Sum_probs=55.9

Q ss_pred             ceeEEEEEEEeccCCcccccccccCceEEEEEEe-------CCCCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCC
Q 031268           21 LRLVAGCIPYKFEKNDENKNCKMEKKVLVLMIST-------PNRDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDE   93 (162)
Q Consensus        21 ~r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r-------~~~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~   93 (162)
                      +..++|+++|+..+          +...|||++.       ++.+.|.+|+|....||++..||.||..||+||.++-..
T Consensus         2 pK~SAGvLlYR~~a----------G~v~VLLvHPGGPFWa~kD~GAWSIPKGey~~gEdp~~AArREf~EE~Gi~vdGP~   71 (161)
T COG4119           2 PKLSAGVLLYRARA----------GVVDVLLVHPGGPFWAGKDDGAWSIPKGEYTGGEDPWLAARREFSEEIGICVDGPR   71 (161)
T ss_pred             CcccceeEEEEecC----------CCEEEEEecCCCCccccCCCCcccccccccCCCcCHHHHHHHHhhhhhceeecCch
Confidence            35688999999875          5789999986       345779999999999999999999999999999875332


Q ss_pred             CCeeeE
Q 031268           94 NPLGEW   99 (162)
Q Consensus        94 ~~l~~~   99 (162)
                      ..+|.+
T Consensus        72 ~~lG~~   77 (161)
T COG4119          72 IDLGSL   77 (161)
T ss_pred             hhhhhh
Confidence            345544

>PLN02552 isopentenyl-diphosphate delta-isomerase

Probab=99.36  E-value=1.5e-11  Score=94.85  Aligned_cols=123  Identities=11%  Similarity=0.031  Sum_probs=68.2

Q ss_pred             cCceeEEEEEEEeccCCcccccccccCceEEEEEEeCCC-----CCeeeC-CCcc----CCCC-------------CHHH
Q 031268           19 DQLRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNR-----DDLVFP-KGGW----EDDE-------------TVSE   75 (162)
Q Consensus        19 ~~~r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~~-----~~W~lP-gG~v----e~gE-------------t~~e   75 (162)
                      +-++.++.+++++.+             +++||.+|...     +.|... +|++    ++||             +..+
T Consensus        53 gl~Hra~~v~i~n~~-------------g~lLLQkRs~~K~~~Pg~Wd~s~~GHp~~ge~~~e~~~e~~~~~~~~~~~~e  119 (247)
T PLN02552         53 GLLHRAFSVFLFNSK-------------YELLLQQRAATKVTFPLVWTNTCCSHPLYGQDPNEVDRESELIDGNVLGVKN  119 (247)
T ss_pred             CceEEEEEEEEEcCC-------------CeEEEEEecCCCCCCCcceecccCCccccccccccccccccccccchhhHHH
Confidence            456777777777654             58999988653     368444 3444    4332             1679


Q ss_pred             HHHHHHHHHhCcccccCC----CCeeeEEeecccccccC--CCCCCceEEEEEEEE-ecccccCCcccccceeEEeeHhH
Q 031268           76 AACREALEEAGVRGLLDE----NPLGEWEFRSKSRMNSC--NSKEGGCRGYMFALE-VTEELESWPEQANYKRIWVSNNH  148 (162)
Q Consensus        76 aa~REl~EEtGl~~~~~~----~~l~~~~~~~~~~~~~~--~~~~~~~~~~~f~~~-~~~~~~~~~~~~~~~~~W~~~~e  148 (162)
                      ||+||+.|||||.....+    ..++.+.|........+  .........++|... ..........++..+++|+++++
T Consensus       120 AA~REL~EElGI~~~~~~~~~l~~~~~~~y~~~~~~~~~~~~~~~E~e~~~v~~~~~~~~~~l~lq~eEV~~~~wvs~~e  199 (247)
T PLN02552        120 AAQRKLLHELGIPAEDVPVDQFTFLTRLHYKAADDVTHGPDGKWGEHELDYLLFIRPVRDVKVNPNPDEVADVKYVNREE  199 (247)
T ss_pred             HHHhHHHHHhCCCccccccccceeeeEEEEecccccccccCCCccceEEEEEEEEEecCCCcccCCHHHhheEEEEeHHH
Confidence            999999999999854321    23455555443210000  000001112222222 22211222233457899999999


Q ss_pred             Hhhhhc
Q 031268          149 FLWRKH  154 (162)
Q Consensus       149 a~~~~~  154 (162)
                      +.+++.
T Consensus       200 l~~~~~  205 (247)
T PLN02552        200 LKEMMR  205 (247)
T ss_pred             HHHHHh
Confidence            998853

>PLN02791 Nudix hydrolase homolog

Probab=99.30  E-value=4.9e-11  Score=104.07  Aligned_cols=122  Identities=11%  Similarity=0.009  Sum_probs=75.4

Q ss_pred             cCceeEEEEEEEeccCCcccccccccCceEEEEEEeCC-----CCCeee-CCCccCCCCCHHHHHHHHHHHHhCcccccC
Q 031268           19 DQLRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPN-----RDDLVF-PKGGWEDDETVSEAACREALEEAGVRGLLD   92 (162)
Q Consensus        19 ~~~r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~-----~~~W~l-PgG~ve~gEt~~eaa~REl~EEtGl~~~~~   92 (162)
                      +-++.++-+.+++.+            +++|||.+|..     .+.|.+ ||||++.|||+.+||+||+.||+||.+...
T Consensus        29 Gl~HrAvhVwIfn~~------------~gelLLQkRS~~K~~~PG~WDiS~gGHv~aGEs~~eAA~REL~EELGI~l~~~   96 (770)
T PLN02791         29 GDYHRAVHVWIYSES------------TQELLLQRRADCKDSWPGQWDISSAGHISAGDTSLLSAQRELEEELGIILPKD   96 (770)
T ss_pred             CCceEEEEEEEEECC------------CCeEEEEEecCCCCCCCCcccCcCCCCCCCCCCHHHHHHHHHHHHhCCCCChh
Confidence            445666666667643            25898888854     257988 799999999999999999999999985322


Q ss_pred             C-CCeeeEEeecccccccCCCCCCceEEEEEEEEeccccc----CCcccccceeEEeeHhHHhhhhcc
Q 031268           93 E-NPLGEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEELE----SWPEQANYKRIWVSNNHFLWRKHS  155 (162)
Q Consensus        93 ~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~----~~~~~~~~~~~W~~~~ea~~~~~~  155 (162)
                      . ..++.+.+........   ...+...++|.+......+    ....+|..+++|++++|+.+++..
T Consensus        97 ~l~~l~~~~~~~~~~~g~---~~e~E~~~VYlv~~~~~~p~~~~~lq~eEV~~v~wvsl~El~~~l~~  161 (770)
T PLN02791         97 AFELLFVFLQECVINDGK---FINNEYNDVYLVTTLDPIPLEAFTLQESEVSAVKYMSIEEYKSALAK  161 (770)
T ss_pred             heeeeeeEEEEeeccCCC---cceeeEEEEEEEEECCCCCcccCCCChhhhheeEEEcHHHHHHHHhc
Confidence            1 2445443322111100   0011233455544222111    122345689999999999987643

>KOG3084 consensus NADH pyrophosphatase I of the Nudix family of hydrolases [Replication, recombination and repair]

Probab=99.29  E-value=6.4e-13  Score=103.58  Aligned_cols=100  Identities=16%  Similarity=0.106  Sum_probs=61.5

Q ss_pred             eEEEEEEeCC--CCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeeeEEeecccccccCCCCCCceEEEE--E
Q 031268           47 VLVLMISTPN--RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYM--F  122 (162)
Q Consensus        47 ~~vLLv~r~~--~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--f  122 (162)
                      .+.||.++++  .+.|..+.|++|+|||++|||+||++||||+++... .....-.++..           .+...+  +
T Consensus       200 ~~~LL~R~~r~~~gl~t~lAGFlEpGES~eeav~REtwEEtGi~V~~I-~~~asQPWP~~-----------p~SLMIgc~  267 (345)
T KOG3084|consen  200 KHALLGRQKRYPPGLWTCLAGFLEPGESIEEAVRRETWEETGIEVEVI-SYVASQPWPLM-----------PQSLMIGCL  267 (345)
T ss_pred             CEeeeecccCCCCchhhhhhccCCccccHHHHHHHHHHHHhCceeeeE-eeeecCCCCCC-----------chHHHHHHH
Confidence            3667766544  356999999999999999999999999999998765 22222222210           111111  1


Q ss_pred             EE-EecccccCCcccccceeEEeeHhHHhhhhc-cccc
Q 031268          123 AL-EVTEELESWPEQANYKRIWVSNNHFLWRKH-SNLV  158 (162)
Q Consensus       123 ~~-~~~~~~~~~~~~~~~~~~W~~~~ea~~~~~-~~l~  158 (162)
                      .+ ...+......+.+...++||+-+|+.+.+. .++.
T Consensus       268 ala~~~~~I~vd~dlEleDaqwF~r~ev~~aL~~kg~~  305 (345)
T KOG3084|consen  268 ALAKLNGKISVDKDLELEDAQWFDREEVKSALTTKGLV  305 (345)
T ss_pred             HHHhhCCccccCcchhhhhcccccHHHHHHHHHhcCCc
Confidence            11 111211222333446789999999987643 4443

>KOG3041 consensus Nucleoside diphosphate-sugar hydrolase of the MutT (NUDIX) family [Replication, recombination and repair]

Probab=99.11  E-value=2.5e-09  Score=78.53  Aligned_cols=48  Identities=29%  Similarity=0.447  Sum_probs=41.1

Q ss_pred             CceEEEEEEeCC--CCC--eeeCCCccCCCCCHHHHHHHHHHHHhCcccccC
Q 031268           45 KKVLVLMISTPN--RDD--LVFPKGGWEDDETVSEAACREALEEAGVRGLLD   92 (162)
Q Consensus        45 ~~~~vLLv~r~~--~~~--W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~   92 (162)
                      ++..++|+++-+  .++  .+||.|-|+.|||++.||+|||+||||+...+.
T Consensus        86 G~~~ivL~kQfRpP~Gk~ciElPAGLiD~ge~~~~aAiREl~EEtGy~gkv~  137 (225)
T KOG3041|consen   86 GKPYIVLVKQFRPPTGKICIELPAGLIDDGEDFEGAAIRELEEETGYKGKVD  137 (225)
T ss_pred             CcEEEEEEEeecCCCCcEEEEcccccccCCCchHHHHHHHHHHHhCccceee
Confidence            467999999854  344  689999999999999999999999999996554

>KOG3069 consensus Peroxisomal NUDIX hydrolase [Replication, recombination and repair]

Probab=98.94  E-value=9e-09  Score=77.64  Aligned_cols=115  Identities=19%  Similarity=0.158  Sum_probs=68.8

Q ss_pred             eeEEEEEEEeccCCcccccccccCceEEEEEEeCC-----CCCeeeCCCccCCCC-CHHHHHHHHHHHHhCcccccCCCC
Q 031268           22 RLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPN-----RDDLVFPKGGWEDDE-TVSEAACREALEEAGVRGLLDENP   95 (162)
Q Consensus        22 r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~-----~~~W~lPgG~ve~gE-t~~eaa~REl~EEtGl~~~~~~~~   95 (162)
                      +.++.+||+-..++         ++.+|||.+|..     .|.-+||||..|+.+ |-.++|.||..||.|+..... ..
T Consensus        42 ~~~aVlI~L~~~~~---------~~l~vLltkRSr~LrshsGev~fPGG~~d~~D~s~~~tAlREt~EEIGl~~~~~-~~  111 (246)
T KOG3069|consen   42 RKAAVLIPLVQVGS---------GELSVLLTKRSRTLRSHSGEVCFPGGRRDPHDKSDIQTALRETEEEIGLDPELV-DV  111 (246)
T ss_pred             CCccEEEEEEEcCC---------CceEEEEEeccccccccCCceeCCCCcCCccccchHHHHHHHHHHHhCCCHHHh-hh
Confidence            45666777665532         468999998854     256799999999854 788899999999999986544 34


Q ss_pred             eeeEEeecccccccCCCCCCceEEEEEEEEecc-cccCCcccccceeEEeeHhHHhhh
Q 031268           96 LGEWEFRSKSRMNSCNSKEGGCRGYMFALEVTE-ELESWPEQANYKRIWVSNNHFLWR  152 (162)
Q Consensus        96 l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~-~~~~~~~~~~~~~~W~~~~ea~~~  152 (162)
                      +|...-..... .+     ....+..|.....- ........+...+.|+++++.+.-
T Consensus       112 ~g~l~~~~~r~-~~-----~v~p~v~~l~~~~~l~~~~ln~gEv~~~F~VPL~~ll~~  163 (246)
T KOG3069|consen  112 LGALPPFVLRS-GW-----SVFPVVGFLSDKKILPSLRLNSGEVESAFWVPLTDLLLP  163 (246)
T ss_pred             hhhccceeecc-Cc-----ccceeEEEEecccccccccCCchheeeeeeeeHHHHhhh
Confidence            44432111100 00     01122222222110 111222334468899999998754

>cd03431 DNA_Glycosylase_C DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone

Probab=98.93  E-value=3.1e-08  Score=67.26  Aligned_cols=88  Identities=18%  Similarity=0.188  Sum_probs=58.9

Q ss_pred             eEEEEEEeCCC----CCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeeeEEeecccccccCCCCCCceEEEEE
Q 031268           47 VLVLMISTPNR----DDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMF  122 (162)
Q Consensus        47 ~~vLLv~r~~~----~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f  122 (162)
                      +++||.+|...    |.|+||+|.++.+|+.+++..|++.+|.++   .. ..++.+.+..+..         .....+|
T Consensus        14 ~~~ll~kR~~~gl~~glwefP~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~H~fth~---------~~~~~~~   80 (118)
T cd03431          14 GRVLLEKRPEKGLLAGLWEFPSVEWEEEADGEEALLSALKKALRL---SL-EPLGTVKHTFTHF---------RLTLHVY   80 (118)
T ss_pred             CeEEEEECCCCCCCCcceeCCCccccCCcCHHHHHHHHHHHHhCc---cc-ccceeEEEecCCe---------EEEEEEE
Confidence            48999988653    569999999999999999999999998764   11 2344444333221         1245566


Q ss_pred             EEEecccccCCcccccceeEEeeHhHHhhh
Q 031268          123 ALEVTEELESWPEQANYKRIWVSNNHFLWR  152 (162)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~W~~~~ea~~~  152 (162)
                      .+......     .+..+.+|++++++..+
T Consensus        81 ~~~~~~~~-----~~~~~~~W~~~eel~~~  105 (118)
T cd03431          81 LARLEGDL-----LAPDEGRWVPLEELDEY  105 (118)
T ss_pred             EEEEeCCC-----cCccccEEccHHHHhhC
Confidence            65543211     11246789999999875

It belongs to the Nudix hydrolase superfamily and is important for the repair of various genotoxic lesions. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity. They are also recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). However, DNA glycosylase does not seem to contain this signature motif. DNA glycosylase consists of 2 domains: the N-terminal domain contains the catalytic properties of the enzyme and the C-terminal domain affects substrate (oxoG) binding and enzymatic turnover. The C-terminal domain is highly similar to MutT, based on secondary structure and topology, despite low sequence identity. MutT sanitizes the nucleotide precursor pool by hydrolyzing oxo-dGTP to

>KOG0648 consensus Predicted NUDIX hydrolase FGF-2 and related proteins [Signal transduction mechanisms]

Probab=98.87  E-value=1.6e-09  Score=84.59  Aligned_cols=110  Identities=18%  Similarity=0.222  Sum_probs=68.9

Q ss_pred             eeEEEEEEEeccCCcccccccccCceEEEEEEeCC-----CCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCe
Q 031268           22 RLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPN-----RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPL   96 (162)
Q Consensus        22 r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~-----~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l   96 (162)
                      +..+|+.+++..             .+||+++..+     .+.|-+|+|.|+++|++.++|+||++||||++.... ..+
T Consensus       115 ~vgvg~~V~n~~-------------~eVlVv~e~d~~~~~~~~wK~ptG~v~~~e~i~~gavrEvkeetgid~ef~-eVl  180 (295)
T KOG0648|consen  115 RVGVGAFVLNKK-------------KEVLVVQEKDGAVKIRGGWKLPTGRVEEGEDIWHGAVREVKEETGIDTEFV-EVL  180 (295)
T ss_pred             heeeeeeEecCC-------------ceeEEEEecccceeecccccccceEecccccchhhhhhhhHHHhCcchhhh-hHH
Confidence            567777887754             4899997643     467999999999999999999999999999975433 111


Q ss_pred             eeEEeecccccccCCCCCCceEEEEEEEEecc--cccCCcccccceeEEeeHhHHhhh
Q 031268           97 GEWEFRSKSRMNSCNSKEGGCRGYMFALEVTE--ELESWPEQANYKRIWVSNNHFLWR  152 (162)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~--~~~~~~~~~~~~~~W~~~~ea~~~  152 (162)
                      . +  ...+...    ....+.-.+|.+....  ......+.++..++|+++++....
T Consensus       181 a-~--r~~H~~~----~~~~ksd~f~~c~L~p~s~~i~~~~~ei~~~~Wmp~~e~v~q  231 (295)
T KOG0648|consen  181 A-F--RRAHNAT----FGLIKSDMFFTCELRPRSLDITKCKREIEAAAWMPIEEYVSQ  231 (295)
T ss_pred             H-H--Hhhhcch----hhcccccceeEEEeeccccccchhHHHHHHHhcccHHHhhcc
Confidence            1 1  1110000    0001223444444322  222334444566799999987765

>PLN02839 nudix hydrolase

Probab=98.72  E-value=1.4e-07  Score=76.00  Aligned_cols=104  Identities=12%  Similarity=0.095  Sum_probs=68.6

Q ss_pred             ceEEEEEEeCCC-----CCe-eeCCCccCCCCCHHHHHHHHHHHHhCcccccC--CCCeeeEEeecccccccCCCCCCce
Q 031268           46 KVLVLMISTPNR-----DDL-VFPKGGWEDDETVSEAACREALEEAGVRGLLD--ENPLGEWEFRSKSRMNSCNSKEGGC  117 (162)
Q Consensus        46 ~~~vLLv~r~~~-----~~W-~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~  117 (162)
                      +.++-+-+|...     +.| .+.+|++..|||+.++++||+.||+||.....  ....|.+.|........     ...
T Consensus       217 ~~~lWV~RRS~tK~t~PGmLDn~VAGGi~aGesp~etliREa~EEAgLp~~l~~~~~~~G~VsY~~~~~~g~-----~~e  291 (372)
T PLN02839        217 QKFLWIGKRSLSKSTYPGMLDHLVAGGLPHGISCGENLVKECEEEAGISKAIADRAIAVGAVSYMDIDQYCF-----KRD  291 (372)
T ss_pred             CeEEEeeccCCCCCCCCChhhhccccCccCCCCHHHHHHHHHHHHcCCCHHHHhcceEeEEEEEEEEcCCcc-----ccC
Confidence            456555555321     345 56689999999999999999999999974421  13567777664322211     122


Q ss_pred             EEEEEEEEeccccc-CCcccccceeEEeeHhHHhhhhc
Q 031268          118 RGYMFALEVTEELE-SWPEQANYKRIWVSNNHFLWRKH  154 (162)
Q Consensus       118 ~~~~f~~~~~~~~~-~~~~~~~~~~~W~~~~ea~~~~~  154 (162)
                      ..|+|.+.+..... ...+.|..++.+++++|+.+.+.
T Consensus       292 vly~YDLeLP~df~P~~qDGEVe~F~Lm~v~EV~~~l~  329 (372)
T PLN02839        292 VLFCYDLELPQDFVPKNQDGEVESFKLIPVAQVANVIR  329 (372)
T ss_pred             EEEEeeeecCCccccCCCccceeEEEEecHHHHHHHHH
Confidence            55678777665332 23344558899999999998754

>COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism]

Probab=98.60  E-value=2.6e-07  Score=66.88  Aligned_cols=116  Identities=14%  Similarity=0.041  Sum_probs=75.6

Q ss_pred             ceeEEEEEEEeccCCcccccccccCceEEEEEEeCCC-----CCee-eCCCccCCCCCHHHHHHHHHHHHhCcccccC--
Q 031268           21 LRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNR-----DDLV-FPKGGWEDDETVSEAACREALEEAGVRGLLD--   92 (162)
Q Consensus        21 ~r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~~-----~~W~-lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~--   92 (162)
                      .+.+..+.+|+.+             +++||.+|...     +.|. ---||--+|||..+||+|-+.+|.||+....  
T Consensus        32 LHrAFS~~lFne~-------------g~LLltrRA~~K~twP~vWTNSvCsHP~~~es~~~A~~rRl~~ELGie~~~~d~   98 (185)
T COG1443          32 LHRAFSSFLFNER-------------GQLLLTRRALSKKTWPGVWTNSVCSHPLPGESNEDAARRRLAYELGIEPDQYDK   98 (185)
T ss_pred             HHhhhheeEECCC-------------CceeeehhhhhcccCcccccccccCCCcCCCchHHHHHHHHHHHhCCCCcccCc
Confidence            4678889999876             47776666321     2341 1246777999999999999999999997622  


Q ss_pred             CCCeeeEEeecccccccCCCCCCceEEEEEEEEecccccCCcccccceeEEeeHhHHhhhhc
Q 031268           93 ENPLGEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWVSNNHFLWRKH  154 (162)
Q Consensus        93 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~W~~~~ea~~~~~  154 (162)
                      ...+..|.|........    .....-++|.+.........| +|..+++|++++++.+++.
T Consensus        99 ~~il~rf~YrA~~~~~~----~E~Eic~V~~~~~~~~~~~np-dEV~~~~wv~~e~l~~~~~  155 (185)
T COG1443          99 LEILPRFRYRAADPDGI----VENEICPVLAARLDSALDPNP-DEVMDYRWVSPEDLKEMVD  155 (185)
T ss_pred             cccccceEEeccCCCCc----ceeeeeeEEEEeecCCCCCCh-HHhhheeccCHHHHHHhhc
Confidence            13455677766544321    112233555555554333333 3458999999999998753

>KOG4195 consensus Transient receptor potential-related channel 7 [Inorganic ion transport and metabolism]

Probab=98.49  E-value=2.2e-07  Score=69.58  Aligned_cols=66  Identities=23%  Similarity=0.343  Sum_probs=51.0

Q ss_pred             CceeEEEEEEEeccCCcccccccccCc--eEEEEEEeCCCCCeeeCCCccCCCCCHHHHHHHHHHHHh
Q 031268           20 QLRLVAGCIPYKFEKNDENKNCKMEKK--VLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEA   85 (162)
Q Consensus        20 ~~r~~v~~i~~~~~~~~~~~~~~~~~~--~~vLLv~r~~~~~W~lPgG~ve~gEt~~eaa~REl~EEt   85 (162)
                      ++.+++.-|+-|-..+.+-++|...++  .+++.|++.+.+.|.+|||.+|+||....+++||+.||.
T Consensus       110 GPNHaadPiVtRwkrd~~gai~~~sgk~ile~vavkr~d~~~WAiPGGmvdpGE~vs~tLkRef~eEa  177 (275)
T KOG4195|consen  110 GPNHAADPIVTRWKRDEDGAICRKSGKKILEFVAVKRPDNGEWAIPGGMVDPGEKVSATLKREFGEEA  177 (275)
T ss_pred             CCccccCcceeeeeecCCCCeeecccceeeEEEEEecCCCCcccCCCCcCCchhhhhHHHHHHHHHHH
Confidence            445667677766443333344444433  788899999999999999999999999999999999996

>PF14815 NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3FSQ_A 1RRS_A 3FSP_A

Probab=98.08  E-value=1.2e-05  Score=54.66  Aligned_cols=91  Identities=20%  Similarity=0.154  Sum_probs=50.7

Q ss_pred             eEEEEEEeCCC----CCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeeeEEeecccccccCCCCCCceEEEEE
Q 031268           47 VLVLMISTPNR----DDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMF  122 (162)
Q Consensus        47 ~~vLLv~r~~~----~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f  122 (162)
                      +++||.+|..+    |.|+||.--++. ++..+.+.+.+.+..|+.+... ..++.+....++.         ..++.+|
T Consensus         9 ~~~Ll~kRp~~gll~GLwefP~~e~~~-~~~~~~l~~~~~~~~~~~~~~~-~~~~~v~H~fSH~---------~~~~~~~   77 (114)
T PF14815_consen    9 GRVLLEKRPEKGLLAGLWEFPLIESDE-EDDEEELEEWLEEQLGLSIRSV-EPLGTVKHVFSHR---------RWTIHVY   77 (114)
T ss_dssp             SEEEEEE--SSSTTTT-EE--EEE-SS-S-CHHHHHHHTCCSSS-EEEE--S-SEEEEEE-SSE---------EEEEEEE
T ss_pred             CEEEEEECCCCChhhcCcccCEeCccC-CCCHHHHHHHHHHHcCCChhhh-eecCcEEEEccce---------EEEEEEE
Confidence            58999999764    569999977663 3335555556667778876655 4667666554432         2256677


Q ss_pred             EEEecccccCCcccccceeEEeeHhHHhhh
Q 031268          123 ALEVTEELESWPEQANYKRIWVSNNHFLWR  152 (162)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~W~~~~ea~~~  152 (162)
                      .+.+......    ......|++.+++.++
T Consensus        78 ~~~~~~~~~~----~~~~~~W~~~~~l~~~  103 (114)
T PF14815_consen   78 EVEVSADPPA----EPEEGQWVSLEELDQY  103 (114)
T ss_dssp             EEEEE-SS--------TTEEEEEGGGGGGS
T ss_pred             EEEecCCCCC----CCCCcEEEEHHHHhhC
Confidence            7766543222    2357899999999876

>KOG2937 consensus Decapping enzyme complex, predicted pyrophosphatase DCP2 [RNA processing and modification]

Probab=97.76  E-value=6e-06  Score=65.33  Aligned_cols=56  Identities=29%  Similarity=0.359  Sum_probs=48.3

Q ss_pred             eEEEEEEEeccCCcccccccccCceEEEEEEeCCCCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccc
Q 031268           23 LVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVRGL   90 (162)
Q Consensus        23 ~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~   90 (162)
                      .+.|+++++..-            -++||++.-....|.||.|++..+|+-.+||+||+.||||.+..
T Consensus        83 Pv~ga~ild~~~------------sr~llv~g~qa~sw~fprgK~~kdesd~~caiReV~eetgfD~s  138 (348)
T KOG2937|consen   83 PVRGAIILDEKR------------SRCLLVKGWQASSWSFPRGKISKDESDSDCAIREVTEETGFDYS  138 (348)
T ss_pred             CCchHhhhhhhh------------hhhheeeceecccccccCccccccchhhhcchhcccchhhcCHH
Confidence            456777777653            48999988877779999999999999999999999999999864

>PF13869 NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B 3Q2S_A 3P5T_D 3BAP_A 2CL3_A 3P6Y_A 3Q2T_B 3BHO_A 3N9U_A

Probab=97.68  E-value=8.1e-05  Score=54.99  Aligned_cols=60  Identities=17%  Similarity=0.161  Sum_probs=42.9

Q ss_pred             cCceeEEEEEEEeccCCcccccccccCceEEEEEEeCCCCCeeeCCCccCCCCCHHHHHHHHHHHHhCccc
Q 031268           19 DQLRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVRG   89 (162)
Q Consensus        19 ~~~r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~   89 (162)
                      .|+|.+|.+|++-...          +-.+|||++.. ...|.||||.+.+||+..++..|-+.+-.|...
T Consensus        40 ~GmRrsVe~Vllvh~h----------~~PHvLLLq~~-~~~fkLPGg~l~~gE~e~~gLkrkL~~~l~~~~   99 (188)
T PF13869_consen   40 EGMRRSVEGVLLVHEH----------GHPHVLLLQIG-NTFFKLPGGRLRPGEDEIEGLKRKLTEKLSPED   99 (188)
T ss_dssp             HSSEEEEEEEEEEEET----------TEEEEEEEEET-TTEEE-SEEE--TT--HHHHHHHHHHHHHB-SS
T ss_pred             hCCceEEEEEEEEecC----------CCcEEEEEecc-CccccCCccEeCCCCChhHHHHHHHHHHcCCCc
Confidence            5777777776655433          36899999854 447999999999999999999999999998863

...

>COG4112 Predicted phosphoesterase (MutT family) [General function prediction only]

Probab=97.08  E-value=0.012  Score=42.43  Aligned_cols=98  Identities=16%  Similarity=0.058  Sum_probs=57.1

Q ss_pred             eEEEEEEeCCC-------CCeee-CCCccCCCC--CHHHH-----HHHHHHHHhCcccccCC--CCeeeEEeeccccccc
Q 031268           47 VLVLMISTPNR-------DDLVF-PKGGWEDDE--TVSEA-----ACREALEEAGVRGLLDE--NPLGEWEFRSKSRMNS  109 (162)
Q Consensus        47 ~~vLLv~r~~~-------~~W~l-PgG~ve~gE--t~~ea-----a~REl~EEtGl~~~~~~--~~l~~~~~~~~~~~~~  109 (162)
                      .+||+-.|..+       +.+++ -|||+..++  ++.++     +.||+.||.++.-...+  ..+|.+   +..... 
T Consensus        72 devliyeRltgggE~RLHn~~SlG~GGHmn~~~GA~s~~evLk~n~~REleEEv~vseqd~q~~e~lGlI---Ndd~ne-  147 (203)
T COG4112          72 DEVLIYERLTGGGEKRLHNLYSLGIGGHMNEGDGATSREEVLKGNLERELEEEVDVSEQDLQELEFLGLI---NDDTNE-  147 (203)
T ss_pred             CEEEEEEeccCcchhhhccccccccccccccCCCcccHHHHHccchHHHHHHHhCcCHHHhhhheeeeee---cCCCcc-
Confidence            38999988532       33555 399998755  33332     66999999999843331  244443   222111 


Q ss_pred             CCCCCCceEEEEEEEEecccccCCcccccceeEEeeHhHHhh
Q 031268          110 CNSKEGGCRGYMFALEVTEELESWPEQANYKRIWVSNNHFLW  151 (162)
Q Consensus       110 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~W~~~~ea~~  151 (162)
                         -...+...+|+.......-...+.+..+++|+...++.+
T Consensus       148 ---VgkVHiG~lf~~~~k~ndvevKEkd~~~~kwik~~ele~  186 (203)
T COG4112         148 ---VGKVHIGALFLGRGKFNDVEVKEKDLFEWKWIKLEELEK  186 (203)
T ss_pred             ---cceEEEEEEEEeeccccceeeeecceeeeeeeeHHHHHH
Confidence               112234466776654322223344457899999999876

>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]

Probab=96.82  E-value=0.0063  Score=48.01  Aligned_cols=61  Identities=20%  Similarity=0.190  Sum_probs=43.8

Q ss_pred             eeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeeeEEeecccccccCCCCCCceEEEEEEEEeccc
Q 031268           61 VFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEE  129 (162)
Q Consensus        61 ~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~  129 (162)
                      ++=+|.|+..-||.+-|..|+.||+|+++... .++..+.|........       ...++|.+++.+.
T Consensus        82 elc~g~idke~s~~eia~eev~eecgy~v~~d-~l~hv~~~~~g~~~s~-------sa~~l~y~ei~es  142 (405)
T KOG4432|consen   82 ELCAGLIDKELSPREIASEEVAEECGYRVDPD-DLIHVITFVVGAHQSG-------SAQHLYYAEIDES  142 (405)
T ss_pred             eeeccccccccCHHHHhHHHHHHHhCCcCChh-HceEEEEEEeccccCc-------cchheeeeecchh
Confidence            44589999999999999999999999998766 4666677766533221       1345566665543

>KOG1689 consensus mRNA cleavage factor I subunit [RNA processing and modification]

Probab=96.59  E-value=0.0053  Score=44.56  Aligned_cols=57  Identities=18%  Similarity=0.199  Sum_probs=43.4

Q ss_pred             cCceeEEEEEEEeccCCcccccccccCceEEEEEEeCCCCCeeeCCCccCCCCCHHHHHHHHHHHHhC
Q 031268           19 DQLRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAG   86 (162)
Q Consensus        19 ~~~r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~~~~W~lPgG~ve~gEt~~eaa~REl~EEtG   86 (162)
                      .++|.+|-+|++-..-          .-.+|||++- +...+.+|||.+++||+-.+.+.|-+-|-.|
T Consensus        66 ~gmRrsvegvlivheH----------~lPHvLLLQi-g~tf~KLPGG~L~pGE~e~~Gl~r~l~~~Lg  122 (221)
T KOG1689|consen   66 EGMRRSVEGVLIVHEH----------NLPHVLLLQI-GNTFFKLPGGRLRPGEDEADGLKRLLTESLG  122 (221)
T ss_pred             hhhhheeeeeEEEeec----------CCCeEEEEee-CCEEEecCCCccCCCcchhHHHHHHHHHHhc
Confidence            3666666655554332          2468888854 3456899999999999999999999999999

>KOG0142 consensus Isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.00  E-value=0.034  Score=41.53  Aligned_cols=115  Identities=17%  Similarity=0.150  Sum_probs=65.5

Q ss_pred             ceeEEEEEEEeccCCcccccccccCceEEEEEEeCCCCCeeeCC--------------CccCC--CCCHHHHHHHHHHHH
Q 031268           21 LRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDLVFPK--------------GGWED--DETVSEAACREALEE   84 (162)
Q Consensus        21 ~r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~~~~W~lPg--------------G~ve~--gEt~~eaa~REl~EE   84 (162)
                      .+.+..++.|+..             +++||.+|.. .+-.||+              |.++.  +.....||+|-|.=|
T Consensus        51 LHRaFSVFlFns~-------------~~lLlQqRS~-~KitFP~~~TNtccSHPL~~~~el~~~d~lGVr~AAqRkL~~E  116 (225)
T KOG0142|consen   51 LHRAFSVFLFNSK-------------NELLLQQRSD-EKITFPGLWTNTCCSHPLYNPGELEENDALGVRRAAQRKLKAE  116 (225)
T ss_pred             hhheeeEEEecCc-------------chHHHhhhcc-ccccccchhhhhhhcCcCCChhhhccCchHHHHHHHHHHHHHh
Confidence            3456667777654             4666666543 3344442              22221  235678999999999


Q ss_pred             hCcccccCC----CCeeeEEeecccccccCCCCCCceEEEEEEEEecccccCCcc-cccceeEEeeHhHHhhhhcc
Q 031268           85 AGVRGLLDE----NPLGEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEELESWPE-QANYKRIWVSNNHFLWRKHS  155 (162)
Q Consensus        85 tGl~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~-~~~~~~~W~~~~ea~~~~~~  155 (162)
                      .||.....+    .+++.+.|.......+     +.+.+. |.+-+.......|+ .+..+++|++.+|+.+++..
T Consensus       117 LGIp~e~v~pee~~~ltrihYkA~sdg~w-----GEhEiD-YiL~~~~~~~~nPnpnEv~e~ryvs~eelkel~~~  186 (225)
T KOG0142|consen  117 LGIPLEEVPPEEFNFLTRIHYKAPSDGIW-----GEHEID-YILFLVKDVTLNPNPNEVSEIRYVSREELKELVAK  186 (225)
T ss_pred             hCCCccccCHHHcccceeeeeecCCCCCc-----ccceee-EEEEEeccCCCCCChhhhhHhheecHHHHHHHHhc
Confidence            999865442    3566777766543322     122222 22222222222232 23578999999999998653

>KOG4548 consensus Mitochondrial ribosomal protein L17 [Translation, ribosomal structure and biogenesis]

Probab=95.64  E-value=0.13  Score=39.64  Aligned_cols=103  Identities=16%  Similarity=0.278  Sum_probs=59.6

Q ss_pred             eEEEEEEeC--CCCCeeeCCCcc-CCCCCHHHHHHHHHHHHhCcccccC---CCCeeeEEeecccccccCCCCCCceEEE
Q 031268           47 VLVLMISTP--NRDDLVFPKGGW-EDDETVSEAACREALEEAGVRGLLD---ENPLGEWEFRSKSRMNSCNSKEGGCRGY  120 (162)
Q Consensus        47 ~~vLLv~r~--~~~~W~lPgG~v-e~gEt~~eaa~REl~EEtGl~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~  120 (162)
                      .-+|||++.  ..+.|.||.+.. +++++...+|.|++++-.|=.....   ..++|.+.+........  ....-..++
T Consensus       139 ~LyLLV~~k~g~~s~w~fP~~~~s~~~~~lr~~ae~~Lk~~~ge~~~t~fvgnaP~g~~~~q~pr~~~~--e~~~~sk~f  216 (263)
T KOG4548|consen  139 KLYLLVKRKFGKSSVWIFPNRQFSSSEKTLRGHAERDLKVLSGENKSTWFVGNAPFGHTPLQSPREMTT--EEPVSSKVF  216 (263)
T ss_pred             eEEEEEeeccCccceeeCCCcccCCccchHHHHHHHHHHHHhcchhhhheeccCccccccccCcccccc--cccccceeE
Confidence            468888854  235799999999 9999999999999999888654322   13444332222211100  010112234


Q ss_pred             EEEEEe-cccccCCcccccceeEEeeHhHHhhhh
Q 031268          121 MFALEV-TEELESWPEQANYKRIWVSNNHFLWRK  153 (162)
Q Consensus       121 ~f~~~~-~~~~~~~~~~~~~~~~W~~~~ea~~~~  153 (162)
                      +|.+.. ......  ......+.|++-+|+.+.+
T Consensus       217 f~k~~lv~~~~~k--n~n~edfvWvTkdel~e~l  248 (263)
T KOG4548|consen  217 FFKASLVANSNQK--NQNKEDFVWVTKDELGEKL  248 (263)
T ss_pred             Eeeeeeccccchh--cccccceEEechHHHhhhc
Confidence            443332 221111  1122458999999998764

>KOG4313 consensus Thiamine pyrophosphokinase [Nucleotide transport and metabolism]

Probab=95.31  E-value=0.15  Score=39.39  Aligned_cols=102  Identities=19%  Similarity=0.123  Sum_probs=65.2

Q ss_pred             eEEEEEEeCCC-CCe-----eeCCCccCCCCCHHHHHHHHHHHHhCcccccCC--CCeeeEEeecc-cccccCCCCCCce
Q 031268           47 VLVLMISTPNR-DDL-----VFPKGGWEDDETVSEAACREALEEAGVRGLLDE--NPLGEWEFRSK-SRMNSCNSKEGGC  117 (162)
Q Consensus        47 ~~vLLv~r~~~-~~W-----~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~--~~l~~~~~~~~-~~~~~~~~~~~~~  117 (162)
                      .++-+-+|+.. ..|     .+-+|++--|-...++|+.|..||+.|......  ...|+.+|-.. .....     ...
T Consensus       148 l~iWvprRS~TKqTWP~~lDN~vaGGl~~g~gI~eT~iKE~~EEAnl~~~~~~Nlv~~G~VSy~~~esr~~~-----~pe  222 (306)
T KOG4313|consen  148 LCIWVPRRSNTKQTWPGKLDNMVAGGLSVGFGIKETAIKEAAEEANLPSDLVKNLVSAGCVSYYKFESRQGL-----FPE  222 (306)
T ss_pred             eEEEecccCCccccCcchhhhhhccccccCchHHHHHHHHHHHhcCCchhhHhcceecceeEEEeeehhhcc-----Ccc
Confidence            45555555432 335     556899999999999999999999999863221  34555555421 11111     123


Q ss_pred             EEEEEEEEeccccc-CCcccccceeEEeeHhHHhhhh
Q 031268          118 RGYMFALEVTEELE-SWPEQANYKRIWVSNNHFLWRK  153 (162)
Q Consensus       118 ~~~~f~~~~~~~~~-~~~~~~~~~~~W~~~~ea~~~~  153 (162)
                      .-|+|.+.+....- ...+.+...+.-++++|....+
T Consensus       223 ~qYVfDL~l~~d~iP~~nDGEV~~F~Lltl~~~v~~l  259 (306)
T KOG4313|consen  223 TQYVFDLELPLDFIPQNNDGEVQAFELLTLKDCVERL  259 (306)
T ss_pred             ceEEEeccCchhhcCCCCCCceeeEeeecHHHHHHHH
Confidence            67889887765433 3334445678889999988653

>PRK10880 adenine DNA glycosylase; Provisional

Probab=92.82  E-value=0.97  Score=36.95  Aligned_cols=35  Identities=26%  Similarity=0.374  Sum_probs=22.5

Q ss_pred             eEEEEEEeCCC----CCeeeCCCccCCCCCHHHHHHHHHHHHhCcc
Q 031268           47 VLVLMISTPNR----DDLVFPKGGWEDDETVSEAACREALEEAGVR   88 (162)
Q Consensus        47 ~~vLLv~r~~~----~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~   88 (162)
                      +++||.+|...    |.|+||..  +..    + ..++..|+.|+.
T Consensus       242 ~~~~l~~r~~~gl~~gl~~fP~~--~~~----~-~~~~~~~~~~~~  280 (350)
T PRK10880        242 DEVWLEQRPPSGLWGGLFCFPQF--ADE----E-ELRQWLAQRGIA  280 (350)
T ss_pred             CEEEEEECCccChhhccccCCCC--cch----h-hHHHHHHhcCCc
Confidence            47888888654    56999963  211    1 245666777875

>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]

Probab=91.73  E-value=0.86  Score=36.30  Aligned_cols=84  Identities=20%  Similarity=0.113  Sum_probs=52.5

Q ss_pred             eeCCCccCCCCCHHHHHHHHHHHHhCcccccCC-CCeeeEEeecccccccCCCCCCceEEEEEEEEecccc------cCC
Q 031268           61 VFPKGGWEDDETVSEAACREALEEAGVRGLLDE-NPLGEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEEL------ESW  133 (162)
Q Consensus        61 ~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~------~~~  133 (162)
                      +|-.|.|+..-|..+-|.||..||+|++..... .....|..-.....         .+-.+|.++++...      ...
T Consensus       287 ELcag~Vd~p~s~~e~a~~e~veecGYdlp~~~~k~va~y~sGVG~SG---------~~QTmfy~eVTdA~rsgpGgg~~  357 (405)
T KOG4432|consen  287 ELCAGRVDDPFSDPEKAARESVEECGYDLPEDSFKLVAKYISGVGQSG---------DTQTMFYVEVTDARRSGPGGGEK  357 (405)
T ss_pred             eeecccCCCCcccHHHHHHHHHHHhCCCCCHHHHhhhheeecccCCcC---------CeeEEEEEEeehhhccCCCCCcc
Confidence            455789998889999999999999999864321 23333321111111         13455666665432      122


Q ss_pred             cccccceeEEeeHhHHhhhh
Q 031268          134 PEQANYKRIWVSNNHFLWRK  153 (162)
Q Consensus       134 ~~~~~~~~~W~~~~ea~~~~  153 (162)
                      .+++..+..-+++++|..+.
T Consensus       358 ee~E~IEvv~lsle~a~~~~  377 (405)
T KOG4432|consen  358 EEDEDIEVVRLSLEDAPSLY  377 (405)
T ss_pred             cccceeeEEEechhhhhHHH
Confidence            33445678889999999874

>PF07026 DUF1317: Protein of unknown function (DUF1317); InterPro: IPR009750 This entry is represented by Bacteriophage lambda, Xis

Probab=84.01  E-value=2.4  Score=25.31  Aligned_cols=23  Identities=9%  Similarity=0.198  Sum_probs=14.9

Q ss_pred             EEEEEeCCCCCeeeCCCccCCCC
Q 031268           49 VLMISTPNRDDLVFPKGGWEDDE   71 (162)
Q Consensus        49 vLLv~r~~~~~W~lPgG~ve~gE   71 (162)
                      +-|+.......|.+|||.+-.+-
T Consensus        13 itl~ys~~~~GWl~Pgg~vi~NP   35 (60)
T PF07026_consen   13 ITLPYSHFKNGWLMPGGKVITNP   35 (60)
T ss_pred             EEEEEEeccceeecCCCeeEcCH
Confidence            33333334456999999987653

The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.

>PF03487 IL13: Interleukin-13; InterPro: IPR020470 Interleukin-13 (IL-13) is a pleiotropic cytokine which may be important in the regulation of the inflammatory and immune responses []

Probab=80.16  E-value=1.9  Score=23.62  Aligned_cols=23  Identities=26%  Similarity=0.151  Sum_probs=12.1

Q ss_pred             CCCccCCCCCHHHHHHHHHHHHh
Q 031268           63 PKGGWEDDETVSEAACREALEEA   85 (162)
Q Consensus        63 PgG~ve~gEt~~eaa~REl~EEt   85 (162)
                      -||..-||--|...++||+-||.
T Consensus        14 lggLasPgPvp~~~alkELIeEL   36 (43)
T PF03487_consen   14 LGGLASPGPVPSSTALKELIEEL   36 (43)
T ss_dssp             ---------S-HHHHHHHHHHHH
T ss_pred             hcccCCCCCCCchHHHHHHHHHH
Confidence            37888899999999999999995

It inhibits inflammatory cytokine production and synergises with IL-2 in regulating interferon-gamma synthesis. The sequences of IL-4 and IL-13 are distantly related.; PDB: 3G6D_A 3L5W_J 3BPO_A 1GA3_A 1IK0_A 3L5X_A 3L5Y_A 1IJZ_A 3LB6_B.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	162
2duk_A	138	Crystal Structure Of Ms0616 Length = 138		8e-07
2fvv_A	194	Human Diphosphoinositol Polyphosphate Phosphohydrol		1e-06
3mcf_A	136	Crystal Structure Of Human Diphosphoinositol Polyph		5e-06

>pdb|2DUK|A Chain A, Crystal Structure Of Ms0616 Length = 138

Iteration: 1
 Score = 49.7 bits (117), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 55/117 (47%), Gaps = 22/117 (18%)
Query: 25  AGCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEE 84
           A C+ ++ E+ DE          ++L+ S+   D  + P GG E +E    AA RE  EE
Sbjct: 13  AACLCFRSEQEDE----------VLLVSSSRYPDQWIVPGGGMEPEEEPGGAAVREVYEE 62
Query: 85  AGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKR 141
           AGV+G L    LG +E + +             R Y++ L VTE LE W +  N  R
Sbjct: 63  AGVKGKLG-RLLGIFENQDRKH-----------RTYVYVLTVTEILEDWEDSVNIGR 107

>pdb|2FVV|A Chain A, Human Diphosphoinositol Polyphosphate Phosphohydrolase 1 Length = 194

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 57/117 (48%), Gaps = 22/117 (18%)
Query: 25  AGCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEE 84
           A C+ ++ E  +E          ++L+ S+ + D  + P GG E +E  S AA RE  EE
Sbjct: 43  AACLCFRSESEEE----------VLLVSSSRHPDRWIVPGGGMEPEEEPSVAAVREVCEE 92
Query: 85  AGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKR 141
           AGV+G L    +G +E           ++E   R Y++ L VTE LE W +  N  R
Sbjct: 93  AGVKGTLG-RLVGIFE-----------NQERKHRTYVYVLIVTEVLEDWEDSVNIGR 137

>pdb|3MCF|A Chain A, Crystal Structure Of Human Diphosphoinositol Polyphosphate Phosphohydrolase 3-Alpha Length = 136

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 56/117 (47%), Gaps = 21/117 (17%)
Query: 25  AGCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEE 84
           A C+ ++ E+ DE          ++L+ S+   D  + P GG E +E    AA RE  EE
Sbjct: 5   AACLCFRSEREDE----------VLLVSSSRYPDRWIVPGGGMEPEEEPGGAAVREVYEE 54
Query: 85  AGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKR 141
           AGV+G L    LG +E           +++   R Y++ L VTE LE W +  +  R
Sbjct: 55  AGVKGKLG-RLLGVFE----------QNQDPEHRTYVYVLTVTELLEDWEDSVSIGR 100

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	162
2fvv_A	194	Diphosphoinositol polyphosphate phosphohydrolase 1	2e-28
3fjy_A	364	Probable MUTT1 protein; dimer, protein structure i	2e-09
1xsa_A	153	BIS(5'-nucleosyl)-tetraphosphatase; nudix enzyme,	4e-08
2pbt_A	134	AP4A hydrolase; nudix protein, diadenosine polypho	4e-08
1ktg_A	138	Diadenosine tetraphosphate hydrolase; nudix, AMP,	3e-07
1vcd_A	126	NDX1; nudix protein, diadenosine polyphosphate, AP	5e-07
3fk9_A	188	Mutator MUTT protein; structural genomics, hydrola	7e-07
3gg6_A	156	Nudix motif 18, nucleoside diphosphate-linked moie	2e-06
3shd_A	153	Phosphatase NUDJ; nudix fold, nudix motif, hydrola	3e-06
2jvb_A	146	Protein PSU1, mRNA-decapping enzyme subunit 2; DCP	4e-06
1k2e_A	156	Nudix homolog; nudix/MUTT-like fold, mixed alpha/b	7e-06
2azw_A	148	MUTT/nudix family protein; MUTT/nudix ,enterococcu	9e-06
2b0v_A	153	Nudix hydrolase; structural genomics, PSI, protein	1e-05
2pqv_A	154	MUTT/nudix family protein; structu genomics, PSI-2	2e-05
3q1p_A	205	Phosphohydrolase (MUTT/nudix family protein); asym	2e-05
2a6t_A	271	SPAC19A8.12; alpha/beta/alpha, RNA binding protein	3e-05
2yyh_A	139	MUTT domain, 8-OXO-DGTPase domain; nudix family pr	4e-05
3h95_A	199	Nucleoside diphosphate-linked moiety X motif 6; NU	8e-05
3son_A	149	Hypothetical nudix hydrolase; structural genomics,	1e-04
3exq_A	161	Nudix family hydrolase; protein structure initiati	2e-04
3id9_A	171	MUTT/nudix family protein; hydrolase, protein stru	2e-04
3f13_A	163	Putative nudix hydrolase family member; structural	2e-04
4dyw_A	157	MUTT/nudix family protein; structural genomics, ni	2e-04
3fcm_A	197	Hydrolase, nudix family; protein structure initiat	4e-04
3i9x_A	187	MUTT/nudix family protein; structural genomics, hy	4e-04
3o8s_A	206	Nudix hydrolase, ADP-ribose pyrophosphatase; struc	6e-04
3f6a_A	159	Hydrolase, nudix family; protein structure initiat	6e-04
3cng_A	189	Nudix hydrolase; structural genomics, APC7497, PSI	8e-04

>2fvv_A Diphosphoinositol polyphosphate phosphohydrolase 1; nudix, inositol polyphosphate metabolism, structural genomics, structural genomics consortium; HET: IHP; 1.25A {Homo sapiens} SCOP: d.113.1.1 PDB: 2q9p_A* 2duk_A 3mcf_A* Length = 194

 Score =  102 bits (256), Expect = 2e-28
 Identities = 43/144 (29%), Positives = 65/144 (45%), Gaps = 25/144 (17%)

Query: 5   SLQARKGRLRQRY-EDQLRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDLVFP 63
           S+   K    + Y  D  +  A C+ ++ E  +E          ++L+ S+ + D  + P
Sbjct: 22  SMMKLKSNQTRTYDGDGYKKRAACLCFRSESEEE----------VLLVSSSRHPDRWIVP 71

Query: 64  KGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMFA 123
            GG E +E  S AA RE  EEAGV+G L    +G +E + +             R Y++ 
Sbjct: 72  GGGMEPEEEPSVAAVREVCEEAGVKGTLGR-LVGIFENQER-----------KHRTYVYV 119

Query: 124 LEVTEELESWPEQANY--KRIWVS 145
           L VTE LE W +  N   KR W  
Sbjct: 120 LIVTEVLEDWEDSVNIGRKREWFK 143

>3fjy_A Probable MUTT1 protein; dimer, protein structure initiative II), NYSGXRC, 11181H, structural genomics; 2.15A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID} Length = 364

 Score = 53.7 bits (128), Expect = 2e-09
 Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 10/77 (12%)

Query: 25 AGCIPYKFEKNDENKNCKME----------KKVLVLMISTPNRDDLVFPKGGWEDDETVS 74
          AG I ++++   +  N                + V ++  P  DD  +PKG  E +ET  
Sbjct: 6  AGGIVWRWKAGSDIANDPAIASSKSAQEQLDSIEVCIVHRPKYDDWSWPKGKLEQNETHR 65

Query: 75 EAACREALEEAGVRGLL 91
           AA RE  EE G    L
Sbjct: 66 HAAVREIGEETGSPVKL 82

>1xsa_A BIS(5'-nucleosyl)-tetraphosphatase; nudix enzyme, human AP4A hydrolase, alpha-beta; NMR {Homo sapiens} SCOP: d.113.1.1 PDB: 1xsb_A 1xsc_A* Length = 153

 Score = 48.6 bits (116), Expect = 4e-08
 Identities = 17/79 (21%), Positives = 27/79 (34%), Gaps = 6/79 (7%)

Query: 25  AGCIPYKFEKNDENKNCKMEKKVLVLMISTP-NRDDLVFPKGGWEDDETVSEAACREALE 83
            G I ++     +  N  +E     L++           PKG  E  E   E A R   E
Sbjct: 11  CGLIIFRRCLIPKVDNNAIE----FLLLQASDGIHHWTPPKGHVEPGEDDLETALRATQE 66

Query: 84  EAGVRGLLDENPLGEWEFR 102
           EAG+        +  ++  
Sbjct: 67  EAGIEAGQLT-IIEGFKRE 84

>1ktg_A Diadenosine tetraphosphate hydrolase; nudix, AMP, magnesium cluster; HET: AMP; 1.80A {Caenorhabditis elegans} SCOP: d.113.1.1 PDB: 1kt9_A* Length = 138

 Score = 46.0 bits (110), Expect = 3e-07
 Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 11/66 (16%)

Query: 25 AGCIPYKFEKNDENKNCKMEKKVLVLMISTPNR-DDLVFPKGGWEDDETVSEAACREALE 83
          AG + Y+          K+  K+  L++           PKG  +  E   +AA RE  E
Sbjct: 6  AGLVIYR----------KLAGKIEFLLLQASYPPHHWTPPKGHVDPGEDEWQAAIRETKE 55

Query: 84 EAGVRG 89
          EA +  
Sbjct: 56 EANITK 61

>1vcd_A NDX1; nudix protein, diadenosine polyphosphate, AP6A, thermus THER HB8, hydrolase, riken structural genomics/proteomics initia RSGI; 1.70A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1vc8_A 1vc9_A* Length = 126

 Score = 45.4 bits (108), Expect = 5e-07
 Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 2/58 (3%)

Query: 49  VLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSR 106
           VL++        VFPKG  E  E++ EAA RE  EE GVR  +   PL    + +   
Sbjct: 16  VLLLR-DRMGFWVFPKGHPEPGESLEEAAVREVWEETGVRAEVLL-PLYPTRYVNPKG 71

>3fk9_A Mutator MUTT protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.50A {Bacillus halodurans} Length = 188

 Score = 45.9 bits (109), Expect = 7e-07
 Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 14/68 (20%)

Query: 21 LRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDLVFPKGGWEDDETVSEAACRE 80
          L+ V  CI       D ++         VL++  P R   V P G  E  E++ E   RE
Sbjct: 3  LQRVTNCIV-----VDHDQ---------VLLLQKPRRGWWVAPGGKMEAGESILETVKRE 48

Query: 81 ALEEAGVR 88
            EE G+ 
Sbjct: 49 YWEETGIT 56

>3gg6_A Nudix motif 18, nucleoside diphosphate-linked moiety X motif 18; NUDT18, NXR1, nucleotide hydrolase, hydrolase, structural genomics; 2.10A {Homo sapiens} Length = 156

 Score = 44.4 bits (105), Expect = 2e-06
 Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 17/68 (25%)

Query: 24 VAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDL---VFPKGGWEDDETVSEAACRE 80
          V          +++++         VL+I    R+       P G  E  ET+ EA  RE
Sbjct: 23 VLAVFL-----SEQDE---------VLLIQEAKRECRGSWYLPAGRMEPGETIVEALQRE 68

Query: 81 ALEEAGVR 88
            EEAG+ 
Sbjct: 69 VKEEAGLH 76

>3shd_A Phosphatase NUDJ; nudix fold, nudix motif, hydrolase, (D)NDP/(D)NTP binding, dephosphorylation; 2.50A {Escherichia coli} PDB: 3dku_A Length = 153

 Score = 43.6 bits (103), Expect = 3e-06
 Identities = 18/45 (40%), Positives = 23/45 (51%)

Query: 44 EKKVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVR 88
          E K LV+  +   +     P G  E DET+ EAA RE  EE G+ 
Sbjct: 15 EGKFLVVEETINGKALWNQPAGHLEADETLVEAAARELWEETGIS 59

>2jvb_A Protein PSU1, mRNA-decapping enzyme subunit 2; DCP2, mRNA decay, cytoplasm, hydrolase, manganese, metal-binding, mRNA processing; NMR {Saccharomyces cerevisiae} Length = 146

 Score = 43.3 bits (102), Expect = 4e-06
 Identities = 15/65 (23%), Positives = 23/65 (35%), Gaps = 12/65 (18%)

Query: 24 VAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALE 83
          V G   +     + +K         +L++     D   FP+G    DE   +   RE  E
Sbjct: 6  VRGAAIFN---ENLSK---------ILLVQGTESDSWSFPRGKISKDENDIDCCIREVKE 53

Query: 84 EAGVR 88
          E G  
Sbjct: 54 EIGFD 58

>1k2e_A Nudix homolog; nudix/MUTT-like fold, mixed alpha/beta, dimer, putative NUDI hydrolase, structural genomics, unknown function; 1.80A {Pyrobaculum aerophilum} SCOP: d.113.1.1 PDB: 1jrk_A 1k26_A Length = 156

 Score = 42.6 bits (100), Expect = 7e-06
 Identities = 14/40 (35%), Positives = 20/40 (50%)

Query: 49 VLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVR 88
          VL++        ++P G  E +ET  EA  RE  EE G+ 
Sbjct: 14 VLLVKHKRLGVYIYPGGHVEHNETPIEAVKREFEEETGIV 53

>2azw_A MUTT/nudix family protein; MUTT/nudix ,enterococcus faecalis, structural genomics, PSI, structure initiative; HET: 1PE; 1.90A {Enterococcus faecalis} SCOP: d.113.1.1 Length = 148

 Score = 42.5 bits (100), Expect = 9e-06
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 1/45 (2%)

Query: 44 EKKVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVR 88
           +   ++++  PN      P G  E  ET  EA  RE LEE G+ 
Sbjct: 28 PENNTMVLVQAPN-GAYFLPGGEIEGTETKEEAIHREVLEELGIS 71

>2b0v_A Nudix hydrolase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.55A {Nitrosomonas europaea} SCOP: d.113.1.1 Length = 153

 Score = 42.1 bits (99), Expect = 1e-05
 Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 3/43 (6%)

Query: 49 VLMI---STPNRDDLVFPKGGWEDDETVSEAACREALEEAGVR 88
           L++          L  P G  E  E++ +A  RE LEE G  
Sbjct: 21 YLLVEEIPRGTAIKLNQPAGHLEPGESIIQACSREVLEETGHS 63

>2pqv_A MUTT/nudix family protein; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 1.63A {Streptococcus pneumoniae} Length = 154

 Score = 41.2 bits (97), Expect = 2e-05
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 4/43 (9%)

Query: 46 KVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVR 88
          K+LV    T ++       G  + +E+  +A  RE  EE GV+
Sbjct: 31 KLLV----TKDKGKYYTIGGAIQVNESTEDAVVREVKEELGVK 69

>3q1p_A Phosphohydrolase (MUTT/nudix family protein); asymmetric dimer, RNA exonuclease, CDP-CHO pyrophosphatase; 1.80A {Bacillus cereus} PDB: 3q4i_A Length = 205

 Score = 41.6 bits (98), Expect = 2e-05
 Identities = 14/68 (20%), Positives = 25/68 (36%), Gaps = 16/68 (23%)

Query: 22  RLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDLVFPKGGW-EDDETVSEAACRE 80
           ++    + ++ EK              +L +   +      P GGW +   T +E A +E
Sbjct: 68  KVDIRAVVFQNEK--------------LLFVKEKSDGKWALP-GGWADVGYTPTEVAAKE 112

Query: 81  ALEEAGVR 88
             EE G  
Sbjct: 113 VFEETGYE 120

>2a6t_A SPAC19A8.12; alpha/beta/alpha, RNA binding protein,hydrolase; 2.50A {Schizosaccharomyces pombe} SCOP: a.242.1.1 d.113.1.7 PDB: 2qkm_B* Length = 271

 Score = 41.6 bits (97), Expect = 3e-05
 Identities = 19/65 (29%), Positives = 25/65 (38%), Gaps = 11/65 (16%)

Query: 23  LVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREAL 82
            V G I           +  M++ VLV            FPKG  + DE+  + A RE  
Sbjct: 102 PVRGAIML---------DMSMQQCVLV--KGWKASSGWGFPKGKIDKDESDVDCAIREVY 150

Query: 83  EEAGV 87
           EE G 
Sbjct: 151 EETGF 155

>2yyh_A MUTT domain, 8-OXO-DGTPase domain; nudix family protein, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.80A {Aquifex aeolicus} Length = 139

 Score = 40.3 bits (95), Expect = 4e-05
 Identities = 18/79 (22%), Positives = 27/79 (34%), Gaps = 22/79 (27%)

Query: 22 RLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDLVFPKGGW-------EDDETVS 74
           L    I   ++  +            +++I    R    +P  G        E  E V 
Sbjct: 9  LLATDVIIRLWDGENFKG---------IVLI---ERK---YPPVGLALPGGFVEVGERVE 53

Query: 75 EAACREALEEAGVRGLLDE 93
          EAA RE  EE G+   L +
Sbjct: 54 EAAAREMREETGLEVRLHK 72

>3h95_A Nucleoside diphosphate-linked moiety X motif 6; NUDT6, nudix, hydrolase, GFG, GFG-1, FGF2AS, structural GENO structural genomics consortium, SGC; HET: FLC; 1.70A {Homo sapiens} Length = 199

 Score = 40.3 bits (94), Expect = 8e-05
 Identities = 14/44 (31%), Positives = 24/44 (54%)

Query: 45 KKVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVR 88
          +K+LV+      ++   FP G  E +E + + A RE  EE G++
Sbjct: 39 RKILVVQDRNKLKNMWKFPGGLSEPEEDIGDTAVREVFEETGIK 82

>3son_A Hypothetical nudix hydrolase; structural genomics, joint center for structural GENO JCSG, protein structure initiative, PSI-biology; HET: MSE; 1.71A {Listeria monocytogenes} Length = 149

 Score = 39.5 bits (92), Expect = 1e-04
 Identities = 26/108 (24%), Positives = 42/108 (38%), Gaps = 7/108 (6%)

Query: 41  CKMEKKVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWE 100
            K E      ++   + D   F  GG ED+E +SE A RE++EE  +   +    L    
Sbjct: 14  IKTEANYQFGVLHRTDADVWQFVAGGGEDEEAISETAKRESIEELNLDVDVKMYSLDSHA 73

Query: 101 FRSKSRMNSCNSKEGGCRGYMFALEVTEELESWP---EQANYKRIWVS 145
                  +   +K      Y FA+++T          E +  +  WVS
Sbjct: 74  SIPNFHFS--FNKPYVVPEYCFAIDLTSCSYQVTLSLEHSELR--WVS 117

>3exq_A Nudix family hydrolase; protein structure initiative II(PSI II), NYSGXRC, 11180K, structural genomics; 2.00A {Lactobacillus brevis atcc 367} Length = 161

 Score = 38.8 bits (91), Expect = 2e-04
 Identities = 20/72 (27%), Positives = 28/72 (38%), Gaps = 11/72 (15%)

Query: 18 EDQLRLVAGCIPYKFEKNDENKNCKMEKKVLVLM-ISTPNRDDLVFPKGGWEDDETVSEA 76
             + LV   +    E            +VLV   ++ P +    FP G  E  E  + A
Sbjct: 6  TQPVELVTMVMVTDPETQ----------RVLVEDKVNVPWKAGHSFPGGHVEVGEPCATA 55

Query: 77 ACREALEEAGVR 88
          A RE  EE G+R
Sbjct: 56 AIREVFEETGLR 67

>3id9_A MUTT/nudix family protein; hydrolase, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.55A {Bacillus thuringiensis str} Length = 171

 Score = 39.0 bits (91), Expect = 2e-04
 Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 13/78 (16%)

Query: 11 GRLRQRYEDQLRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDLVFPKGGWEDD 70
           + R   E+ +++    I  +            ++KVL L+       D   P G  E+ 
Sbjct: 12 RKRRLYIENIMQVRVTGILIE------------DEKVL-LVKQKVANRDWSLPGGRVENG 58

Query: 71 ETVSEAACREALEEAGVR 88
          ET+ EA  RE  EE G+ 
Sbjct: 59 ETLEEAMIREMREETGLE 76

>3f13_A Putative nudix hydrolase family member; structural genomics, PSI-2, protein structure initiative; 1.70A {Chromobacterium violaceum} Length = 163

 Score = 38.7 bits (90), Expect = 2e-04
 Identities = 11/28 (39%), Positives = 13/28 (46%)

Query: 62 FPKGGWEDDETVSEAACREALEEAGVRG 89
           P G     E  S+A  RE  EE G+R 
Sbjct: 41 LPGGKANRGELRSQALIREIREETGLRI 68

>4dyw_A MUTT/nudix family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Burkholderia pseudomallei} Length = 157

 Score = 38.5 bits (90), Expect = 2e-04
 Identities = 12/28 (42%), Positives = 14/28 (50%), Gaps = 2/28 (7%)

Query: 62 FPKGGW-EDDETVSEAACREALEEAGVR 88
           P GG  +  E V  A CRE  EE G+ 
Sbjct: 58 LP-GGKVDWLEPVERAVCREIEEELGIA 84

>3fcm_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, 11180J, structural genomics; 2.20A {Clostridium perfringens atcc 13124} Length = 197

 Score = 38.1 bits (88), Expect = 4e-04
 Identities = 10/42 (23%), Positives = 19/42 (45%)

Query: 49  VLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVRGL 90
            LMI     +   +  G  ++++   + A +E  EE GV+  
Sbjct: 60  FLMIHHNIYNSWAWTGGHSDNEKDQLKVAIKELKEETGVKNP 101

>3i9x_A MUTT/nudix family protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.20A {Listeria innocua} Length = 187

 Score = 37.8 bits (88), Expect = 4e-04
 Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 10/51 (19%)

Query: 49 VLMI---STPNRDDLVFPKGGW-------EDDETVSEAACREALEEAGVRG 89
          +L+I    T          G W       +++E+  +AA RE  EE  +  
Sbjct: 48 ILLIKRSLTNAEGKPNMEGGKWAVPGGFVDENESAEQAAERELEEETSLTD 98

>3o8s_A Nudix hydrolase, ADP-ribose pyrophosphatase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.27A {Streptococcus suis} Length = 206

 Score = 37.9 bits (88), Expect = 6e-04
 Identities = 10/25 (40%), Positives = 16/25 (64%), Gaps = 1/25 (4%)

Query: 65  GGW-EDDETVSEAACREALEEAGVR 88
           GGW + D++V +   +E  EEAG+ 
Sbjct: 97  GGWCDVDQSVKDNVVKEVKEEAGLD 121

>3f6a_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.02A {Clostridium perfringens atcc 13124} Length = 159

 Score = 37.3 bits (86), Expect = 6e-04
 Identities = 15/43 (34%), Positives = 20/43 (46%)

Query: 49 VLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVRGLL 91
          VL+        ++   G  E +E   EA  REA EEAG+   L
Sbjct: 19 VLLHLHKKAKKMLPLGGHIEVNELPEEACIREAKEEAGLNVTL 61

>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718} Length = 189

 Score = 37.0 bits (86), Expect = 8e-04
 Identities = 15/34 (44%), Positives = 19/34 (55%)

Query: 55 PNRDDLVFPKGGWEDDETVSEAACREALEEAGVR 88
          P R     P G  E++ET+ + A RE LEEA  R
Sbjct: 62 PYRGKWTLPAGFMENNETLVQGAARETLEEANAR 95

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	162
3i7u_A	134	AP4A hydrolase; nudix protein, diadenosine polypho	99.93
3u53_A	155	BIS(5'-nucleosyl)-tetraphosphatase [asymmetrical];	99.91
1ktg_A	138	Diadenosine tetraphosphate hydrolase; nudix, AMP,	99.88
1vcd_A	126	NDX1; nudix protein, diadenosine polyphosphate, AP	99.88
3gg6_A	156	Nudix motif 18, nucleoside diphosphate-linked moie	99.88
2fvv_A	194	Diphosphoinositol polyphosphate phosphohydrolase 1	99.88
2pbt_A	134	AP4A hydrolase; nudix protein, diadenosine polypho	99.88
3son_A	149	Hypothetical nudix hydrolase; structural genomics,	99.87
3i9x_A	187	MUTT/nudix family protein; structural genomics, hy	99.87
3grn_A	153	MUTT related protein; structural genomics, hydrola	99.87
1rya_A	160	GDP-mannose mannosyl hydrolase; GDP-glucose, nudix	99.86
4dyw_A	157	MUTT/nudix family protein; structural genomics, ni	99.86
2yyh_A	139	MUTT domain, 8-OXO-DGTPase domain; nudix family pr	99.86
3id9_A	171	MUTT/nudix family protein; hydrolase, protein stru	99.86
3shd_A	153	Phosphatase NUDJ; nudix fold, nudix motif, hydrola	99.86
3gwy_A	140	Putative CTP pyrophosphohydrolase; structural geno	99.86
3fcm_A	197	Hydrolase, nudix family; protein structure initiat	99.85
3f6a_A	159	Hydrolase, nudix family; protein structure initiat	99.85
3eds_A	153	MUTT/nudix family protein; MUT/nudix protein, prot	99.85
2w4e_A	145	MUTT/nudix family protein; ADP-ribose pyrophosphat	99.85
3q1p_A	205	Phosphohydrolase (MUTT/nudix family protein); asym	99.85
1sjy_A	159	MUTT/nudix family protein; nudix fold, alpha-beta-	99.85
3exq_A	161	Nudix family hydrolase; protein structure initiati	99.85
3q93_A	176	7,8-dihydro-8-oxoguanine triphosphatase; structura	99.85
2kdv_A	164	RNA pyrophosphohydrolase; nudix family, magnesium,	99.85
2b0v_A	153	Nudix hydrolase; structural genomics, PSI, protein	99.85
2o1c_A	150	DATP pyrophosphohydrolase; nudix NTP hydrolase NTP	99.85
2fb1_A	226	Conserved hypothetical protein; structural genomic	99.84
2azw_A	148	MUTT/nudix family protein; MUTT/nudix ,enterococcu	99.84
3h95_A	199	Nucleoside diphosphate-linked moiety X motif 6; NU	99.84
3cng_A	189	Nudix hydrolase; structural genomics, APC7497, PSI	99.84
3hhj_A	158	Mutator MUTT protein; niaid, ssgcid, decode, UW, S	99.84
2pqv_A	154	MUTT/nudix family protein; structu genomics, PSI-2	99.84
2jvb_A	146	Protein PSU1, mRNA-decapping enzyme subunit 2; DCP	99.83
3ees_A	153	Probable pyrophosphohydrolase; nudix, RNA pyrophos	99.83
3gz5_A	240	MUTT/nudix family protein; DNA binding protein, nu	99.83
2yvp_A	182	NDX2, MUTT/nudix family protein; nudix protein, AD	99.83
3fk9_A	188	Mutator MUTT protein; structural genomics, hydrola	99.83
3o8s_A	206	Nudix hydrolase, ADP-ribose pyrophosphatase; struc	99.83
1k2e_A	156	Nudix homolog; nudix/MUTT-like fold, mixed alpha/b	99.83
3r03_A	144	Nudix hydrolase; structural genomics, PSI2, protei	99.82
1v8y_A	170	ADP-ribose pyrophosphatase; nudix motif, loop-heli	99.82
2fkb_A	180	Putative nudix hydrolase YFCD; putative protein, M	99.82
3oga_A	165	Nucleoside triphosphatase NUDI; salmonella enteric	99.82
3f13_A	163	Putative nudix hydrolase family member; structural	99.82
3fjy_A	364	Probable MUTT1 protein; dimer, protein structure i	99.82
3o6z_A	191	GDP-mannose pyrophosphatase NUDK; nudix, hydrolase	99.81
1nqz_A	194	COA pyrophosphatase (MUTT/nudix family protein); D	99.81
3q91_A	218	Uridine diphosphate glucose pyrophosphatase; struc	99.81
1vhz_A	198	ADP compounds hydrolase NUDE; structural genomics;	99.81
1f3y_A	165	Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase	99.81
2rrk_A	140	ORF135, CTP pyrophosphohydrolase; NMR {Escherichia	99.81
2fml_A	273	MUTT/nudix family protein; structural genomics, PS	99.81
2b06_A	155	MUTT/nudix family protein; structural genomics, P	99.8
1hzt_A	190	Isopentenyl diphosphate delta-isomerase; dimethyla	99.8
1q27_A	171	Putative nudix hydrolase DR0079; radiation resista	99.8
1g0s_A	209	Hypothetical 23.7 kDa protein in ICC-TOLC intergen	99.8
1mut_A	129	MUTT, nucleoside triphosphate pyrophosphohydrolase	99.8
1mk1_A	207	ADPR pyrophosphatase; nudix hydrolase, adprase, ad	99.79
2dsc_A	212	ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP	99.78
2a6t_A	271	SPAC19A8.12; alpha/beta/alpha, RNA binding protein	99.78
1vk6_A	269	NADH pyrophosphatase; 1790429, structural genomics	99.78
2qjo_A	341	Bifunctional NMN adenylyltransferase/nudix hydrol;	99.77
3e57_A	211	Uncharacterized protein TM1382; structural genomic	99.76
1x51_A	155	A/G-specific adenine DNA glycosylase; nudix domain	99.76
2qjt_B	352	Nicotinamide-nucleotide adenylyltransferase; two i	99.72
1q33_A	292	Pyrophosphatase, ADP-ribose pyrophosphatase; nudix	99.7
1u20_A	212	U8 snoRNA-binding protein X29; modified nudix hydr	99.68
3qsj_A	232	Nudix hydrolase; structural genomics, PSI-biology,	99.66
3fsp_A	369	A/G-specific adenine glycosylase; protein-DNA comp	99.64
2dho_A	235	Isopentenyl-diphosphate delta-isomerase 1; alpha/b	99.62
2pny_A	246	Isopentenyl-diphosphate delta-isomerase 2; caroten	99.6
2xsq_A	217	U8 snoRNA-decapping enzyme; hydrolase, mRNA decapp	99.56
3dup_A	300	MUTT/nudix family protein; nudix superfamily hydro	99.55
3rh7_A	321	Hypothetical oxidoreductase; FMN-binding split bar	99.46
3bho_A	208	Cleavage and polyadenylation specificity factor su	99.44
3kvh_A	214	Protein syndesmos; NUDT16-like, NUDT16L1, nudix, R	99.36

>3i7u_A AP4A hydrolase; nudix protein, diadenosine polyphosphate, S genomics, NPPSFA, national project on protein structural AN functional analyses; HET: PGE PG4; 1.80A {Aquifex aeolicus} PDB: 3i7v_A*

Probab=99.93  E-value=1.4e-25  Score=157.12  Aligned_cols=117  Identities=23%  Similarity=0.216  Sum_probs=84.4

Q ss_pred             eeEEEEEEEeccCCcccccccccCceEEEEEEeCCCCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeeeEEe
Q 031268           22 RLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEF  101 (162)
Q Consensus        22 r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~~~~  101 (162)
                      +.+||+|++++              ++|||++++ .+.|.||||++|+|||+.+||+||++||||+.+... ..++.+.+
T Consensus         4 ~~aag~vv~~~--------------~~vLL~~r~-~g~W~~PgG~ve~gEt~~~aa~RE~~EEtGl~~~~~-~~l~~~~~   67 (134)
T 3i7u_A            4 EFSAGGVLFKD--------------GEVLLIKTP-SNVWSFPKGNIEPGEKPEETAVREVWEETGVKGEIL-DYIGEIHY   67 (134)
T ss_dssp             EEEEEEEEEET--------------TEEEEEECT-TSCEECCEEECCTTCCHHHHHHHHHHHHHSEEEEEE-EEEEEEEE
T ss_pred             EEEEEEEEEEC--------------CEEEEEEeC-CCcEECCeeEecCCCCHHHHHHHHHHHhcCceEEEe-eeeeeeeE
Confidence            46888999874              389999875 468999999999999999999999999999998766 46666544


Q ss_pred             ecccccccCCCCCCceEEEEEEEEecccccCCcccccceeEEeeHhHHhhhh-ccccccc
Q 031268          102 RSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWVSNNHFLWRK-HSNLVGM  160 (162)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~W~~~~ea~~~~-~~~l~~~  160 (162)
                      ......     ......+++|.+...+... .++.++.+++||+++|+.+++ .++.+++
T Consensus        68 ~~~~~~-----~~~~~~~~~f~~~~~~~~~-~~~~E~~~~~W~~~~e~~~~l~~~~~r~i  121 (134)
T 3i7u_A           68 WYTLKG-----ERIFKTVKYYLMKYKEGEP-RPSWEVKDAKFFPIKEAKKLLKYKGDKEI  121 (134)
T ss_dssp             EEEETT-----EEEEEEEEEEEEEEEEECC-CCCTTSSEEEEEEHHHHHHHBCSHHHHHH
T ss_pred             EecCCC-----ceEEEEEEEEEEEEcCCcC-cCChhheEEEEEEHHHHhhhcCChHHHHH
Confidence            332211     1112245677776554322 344556899999999999874 3555544

>3u53_A BIS(5'-nucleosyl)-tetraphosphatase [asymmetrical]; hydrolase; 2.71A {Homo sapiens} PDB: 1xsa_A 1xsb_A 1xsc_A*

Probab=99.91  E-value=1e-23  Score=150.47  Aligned_cols=127  Identities=16%  Similarity=0.115  Sum_probs=82.7

Q ss_pred             EEEEEEEeccCCcccccccccCceEEEEEEeCC-CCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeeeEEee
Q 031268           24 VAGCIPYKFEKNDENKNCKMEKKVLVLMISTPN-RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFR  102 (162)
Q Consensus        24 ~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~-~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~~~~~  102 (162)
                      ++|+|+|+...    ...-.+++.+|||+++++ .+.|.||||++|+|||+.+||+||++||||+.+... ..++.+.+.
T Consensus         5 a~G~iifr~~~----~~~~~n~~~e~LL~~r~~~~~~W~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~-~~~~~~~~~   79 (155)
T 3u53_A            5 ACGLIIFRRCL----IPKVDNNAIEFLLLQASDGIHHWTPPKGHVEPGEDDLETALRETQEEAGIEAGQL-TIIEGFKRE   79 (155)
T ss_dssp             EEEEEEEEECC----CSSSSSCSEEEEEEEESSSSCCEECSEEECCSSCCHHHHHHHHHHHHHCCCGGGE-EEEEEEEEE
T ss_pred             EeEEEEEcccc----ccceeCCCcEEEEEEecCCCCCEECCeeeccCCCCHHHHHHHHHHHHHCCccccc-eeeeeEeee
Confidence            67899997421    000112468999999875 467999999999999999999999999999997655 345544322


Q ss_pred             cccccccCCCCCCceEEEEEEEEeccc-ccCCcccccceeEEeeHhHHhhhh-ccccccc
Q 031268          103 SKSRMNSCNSKEGGCRGYMFALEVTEE-LESWPEQANYKRIWVSNNHFLWRK-HSNLVGM  160 (162)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~f~~~~~~~-~~~~~~~~~~~~~W~~~~ea~~~~-~~~l~~~  160 (162)
                      .....     ........+|.+..... ....++++..+++|++++|+.+++ .++++.+
T Consensus        80 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~ea~~~~~~~~~~~~  134 (155)
T 3u53_A           80 LNYVA-----RNKPKTVIYWLAEVKDYDVEIRLSHEHQAYRWLGLEEACQLAQFKEMKAA  134 (155)
T ss_dssp             EEEEE-----TTEEEEEEEEEEEESCTTCCCCCCTTEEEEEEECHHHHHHHHCSHHHHHH
T ss_pred             eecCC-----CcceeEEEEEEEEEeccCCccCCCcceeEEEEeEHHHHHHHcCCHHHHHH
Confidence            21110     01122344455544432 222334456889999999999874 3555444

>1ktg_A Diadenosine tetraphosphate hydrolase; nudix, AMP, magnesium cluster; HET: AMP; 1.80A {Caenorhabditis elegans} SCOP: d.113.1.1 PDB: 1kt9_A*

Probab=99.88  E-value=2.7e-22  Score=139.75  Aligned_cols=113  Identities=16%  Similarity=0.114  Sum_probs=80.1

Q ss_pred             eeEEEEEEEeccCCcccccccccCceEEEEEEeCC-CCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCC---CCee
Q 031268           22 RLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPN-RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDE---NPLG   97 (162)
Q Consensus        22 r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~-~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~---~~l~   97 (162)
                      +.++++|+++.++          ++++|||++++. .+.|.||||++++|||+++||+||++||||+.+....   ..++
T Consensus         3 ~~~~~~vi~~~~~----------~~~~vLl~~r~~~~~~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~   72 (138)
T 1ktg_A            3 VKAAGLVIYRKLA----------GKIEFLLLQASYPPHHWTPPKGHVDPGEDEWQAAIRETKEEANITKEQLTIHEDCHE   72 (138)
T ss_dssp             EEEEEEEEEEEET----------TEEEEEEEEESSTTCCEESSEEECCTTCCHHHHHHHHHHHHHCCCGGGEEEEEEEEE
T ss_pred             eEEEEEEEEEecC----------CCcEEEEEEccCCCCcEeCCccccCCCCCHHHHHHHHHHHHHCCCccceEEeccccc
Confidence            4678899998653          357999999874 3579999999999999999999999999999644321   1223


Q ss_pred             eEEeecccccccCCCCCCceEEEEEEEEecccccCCcccccceeEEeeHhHHhhhh
Q 031268           98 EWEFRSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWVSNNHFLWRK  153 (162)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~W~~~~ea~~~~  153 (162)
                      .+.+....         .....++|.+.........++.+..+++|++++++.++.
T Consensus        73 ~~~~~~~~---------~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~  119 (138)
T 1ktg_A           73 TLFYEAKG---------KPKSVKYWLAKLNNPDDVQLSHEHQNWKWCELEDAIKIA  119 (138)
T ss_dssp             EEEEEETT---------EEEEEEEEEEEECSCCCCCCCTTEEEEEEECHHHHHHHH
T ss_pred             eEEEEeCC---------CceEEEEEEEEecCCcccCCCchhcEeEeccHHHHHHhh
Confidence            33333321         123567787776552222334455789999999999874

>1vcd_A NDX1; nudix protein, diadenosine polyphosphate, AP6A, thermus THER HB8, hydrolase, riken structural genomics/proteomics initia RSGI; 1.70A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1vc8_A 1vc9_A*

Probab=99.88  E-value=2.8e-22  Score=137.58  Aligned_cols=107  Identities=28%  Similarity=0.240  Sum_probs=79.9

Q ss_pred             eeEEEEEEEeccCCcccccccccCceEEEEEEeCCCCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeeeEEe
Q 031268           22 RLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEF  101 (162)
Q Consensus        22 r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~~~~  101 (162)
                      ..++++|+++.+             ++|||++++. +.|.||||++++|||+.+||+||++||||+.+... ..++.+.+
T Consensus         2 ~~~~~~vi~~~~-------------~~vLl~~r~~-g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~-~~~~~~~~   66 (126)
T 1vcd_A            2 ELGAGGVVFNAK-------------REVLLLRDRM-GFWVFPKGHPEPGESLEEAAVREVWEETGVRAEVL-LPLYPTRY   66 (126)
T ss_dssp             EEEEEEEEECTT-------------SCEEEEECTT-SCEECCEECCCTTCCHHHHHHHHHHHHHCCEEEEE-EEEEEEEE
T ss_pred             eeEEEEEEEcCC-------------CEEEEEEECC-CCccCCcCcCCCCCCHHHHHHHHHHHhhCcEeeec-cEEeEEEE
Confidence            357788888754             3899999876 78999999999999999999999999999998766 46777665


Q ss_pred             ecccccccCCCCCCceEEEEEEEEecccccCCcccccceeEEeeHhHHhhhh
Q 031268          102 RSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWVSNNHFLWRK  153 (162)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~W~~~~ea~~~~  153 (162)
                      .....         ....++|.+...... ..++.+..+++|++++++.+++
T Consensus        67 ~~~~~---------~~~~~~~~~~~~~~~-~~~~~e~~~~~w~~~~el~~~~  108 (126)
T 1vcd_A           67 VNPKG---------VEREVHWFLMRGEGA-PRLEEGMTGAGWFSPEEARALL  108 (126)
T ss_dssp             ECTTS---------CEEEEEEEEEEEESC-CCCCTTCCEEEEECHHHHHHHB
T ss_pred             ecCCc---------eEEEEEEEEEEcCCC-CCCCcceeeeEEcCHHHHHHhh
Confidence            54211         234566666543322 2334455789999999999864

>3gg6_A Nudix motif 18, nucleoside diphosphate-linked moiety X motif 18; NUDT18, NXR1, nucleotide hydrolase, hydrolase, structural genomics; 2.10A {Homo sapiens}

Probab=99.88  E-value=2e-22  Score=143.50  Aligned_cols=113  Identities=21%  Similarity=0.222  Sum_probs=82.5

Q ss_pred             ccccCceeEEEEEEEeccCCcccccccccCceEEEEEEeCC---CCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccC
Q 031268           16 RYEDQLRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPN---RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLD   92 (162)
Q Consensus        16 ~~~~~~r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~---~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~   92 (162)
                      ++.......+++++++.+             ++|||+++.+   .+.|.||||++|+|||+++||+||++||||+.+...
T Consensus        14 ~~~~~~~~~v~~~i~~~~-------------~~vLl~~r~~~~~~~~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~   80 (156)
T 3gg6_A           14 RLRKNVCYVVLAVFLSEQ-------------DEVLLIQEAKRECRGSWYLPAGRMEPGETIVEALQREVKEEAGLHCEPE   80 (156)
T ss_dssp             CCCTTCEEEEEEECBCTT-------------SEEEEEECCCTTSTTCEECSEEECCTTCCHHHHHHHHHHHHHCEEEEEE
T ss_pred             ccCCceEEEEEEEEEeCC-------------CEEEEEEecCCCCCCEEECCeeeccCCCCHHHHHHHHHHHhhCceeEee
Confidence            555666677777777654             4899999976   577999999999999999999999999999998766


Q ss_pred             CCCeeeEEeecccccccCCCCCCceEEEEEEEEecccccC---CcccccceeEEeeHhHHhhhhc
Q 031268           93 ENPLGEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEELES---WPEQANYKRIWVSNNHFLWRKH  154 (162)
Q Consensus        93 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~---~~~~~~~~~~W~~~~ea~~~~~  154 (162)
                       ..++.+....            ....++|.+........   .++.+..+++|++++++.+++.
T Consensus        81 -~~~~~~~~~~------------~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~  132 (156)
T 3gg6_A           81 -TLLSVEERGP------------SWVRFVFLARPTGGILKTSKEADAESLQAAWYPRTSLPTPLR  132 (156)
T ss_dssp             -EEEEEEESST------------TEEEEEEEEEEEEECCCCGGGCSSSCSEEEEEETTSCCSSBS
T ss_pred             -eEEEEEcCCC------------CEEEEEEEEEeeCCeeccCCCCCcceeeeEEEcHHHCccccc
Confidence             4666654211            12445666655332111   2334567899999999998754

>2fvv_A Diphosphoinositol polyphosphate phosphohydrolase 1; nudix, inositol polyphosphate metabolism, structural genomics, structural genomics consortium; HET: IHP; 1.25A {Homo sapiens} SCOP: d.113.1.1 PDB: 2q9p_A* 2duk_A 3mcf_A*

Probab=99.88  E-value=3.5e-22  Score=148.10  Aligned_cols=114  Identities=34%  Similarity=0.544  Sum_probs=82.2

Q ss_pred             ccCceeEEEEEEEeccCCcccccccccCceEEEEEEeCC-CCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCe
Q 031268           18 EDQLRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPN-RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPL   96 (162)
Q Consensus        18 ~~~~r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~-~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l   96 (162)
                      ..+++..+++|+++.++           +++|||+++.. .+.|.||||++|+|||+++||+||++||||+.+... ..+
T Consensus        36 ~~~~~~~~~~vi~~~~~-----------~~~vLLv~r~~~~g~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~-~~l  103 (194)
T 2fvv_A           36 GDGYKKRAACLCFRSES-----------EEEVLLVSSSRHPDRWIVPGGGMEPEEEPSVAAVREVCEEAGVKGTLG-RLV  103 (194)
T ss_dssp             TTSCEEEEEEEEESSTT-----------CCEEEEEECSSCTTSEECSEEECCTTCCHHHHHHHHHHHHHCEEEEEE-EEE
T ss_pred             cCCccccEEEEEEEECC-----------CCEEEEEEEeCCCCcEECCCCcCCCCcCHHHHHHHHHHHHhCCccccc-eEE
Confidence            35678888899886542           46999999865 478999999999999999999999999999998766 467


Q ss_pred             eeEEeecccccccCCCCCCceEEEEEEEEecccccCCccc--ccceeEEeeHhHHhhhhc
Q 031268           97 GEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQ--ANYKRIWVSNNHFLWRKH  154 (162)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~--~~~~~~W~~~~ea~~~~~  154 (162)
                      +.+.+...           ....++|.+.+.......+..  +..+++|++++++.+++.
T Consensus       104 ~~~~~~~~-----------~~~~~~f~~~~~~~~~~~~~~~e~~~~~~W~~~~el~~~l~  152 (194)
T 2fvv_A          104 GIFENQER-----------KHRTYVYVLIVTEVLEDWEDSVNIGRKREWFKIEDAIKVLQ  152 (194)
T ss_dssp             EEEEETTT-----------TEEEEEEEEEEEEECSSCHHHHHHCCCEEEEEHHHHHHHHT
T ss_pred             EEEEcCCC-----------ceEEEEEEEEEccccCCCCCcccccceEEEEEHHHHHHHHh
Confidence            77663221           124556666544322222211  235789999999998653

>3son_A Hypothetical nudix hydrolase; structural genomics, joint center for structural GENO JCSG, protein structure initiative, PSI-biology; HET: MSE; 1.71A {Listeria monocytogenes}

Probab=99.87  E-value=1.2e-21  Score=138.52  Aligned_cols=122  Identities=20%  Similarity=0.192  Sum_probs=82.0

Q ss_pred             eEEEEEEEeccCCcccccccccCceEEEEEEeCCCCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCee-eEEe
Q 031268           23 LVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLG-EWEF  101 (162)
Q Consensus        23 ~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~-~~~~  101 (162)
                      .+|+++++...+          ++++|||++|...+.|.||||++|+|||+.+||+||++||||+.+......+. .+.+
T Consensus         6 ~~v~vvi~~~~~----------~~~~vLl~~r~~~g~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~   75 (149)
T 3son_A            6 FQVLVIPFIKTE----------ANYQFGVLHRTDADVWQFVAGGGEDEEAISETAKRESIEELNLDVDVKMYSLDSHASI   75 (149)
T ss_dssp             CEEEEEEEEECS----------SSEEEEEEEESSSSCEECEEEECCTTCCHHHHHHHHHHHHHTCCSCCCEEEEEEEEEE
T ss_pred             eEEEEEEEEecC----------CCeEEEEEEEcCCCCEeCCccccCCCCCHHHHHHHHHHHHhCCCcccceEEEEeeecc
Confidence            467778876543          36899999998888999999999999999999999999999998764311121 1222


Q ss_pred             ecccccccCCCCCCceEEEEEEEEecc--cccCCcccccceeEEeeHhHHhhhh-ccccc
Q 031268          102 RSKSRMNSCNSKEGGCRGYMFALEVTE--ELESWPEQANYKRIWVSNNHFLWRK-HSNLV  158 (162)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~f~~~~~~--~~~~~~~~~~~~~~W~~~~ea~~~~-~~~l~  158 (162)
                      ......  + ........++|.+....  ..... ..+..+++|++++++.++. .+..+
T Consensus        76 ~~~~~~--~-~~~~~~~~~~f~~~~~~~~~~~~~-~~E~~~~~W~~~~el~~~~~~~~~~  131 (149)
T 3son_A           76 PNFHFS--F-NKPYVVPEYCFAIDLTSCSYQVTL-SLEHSELRWVSYESAIQLLEWDSNK  131 (149)
T ss_dssp             EGGGTC--S-SSCSEEEEEEEEEECTTTGGGCCC-CTTEEEEEEECHHHHHHHCCCHHHH
T ss_pred             cceeec--c-CCceEeEEEEEEEEcCCCCCcccC-CCceeeEEEeCHHHHHHHhcCHHHH
Confidence            211110  0 01123456778887762  22222 3456889999999999873 34433

>3i9x_A MUTT/nudix family protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.20A {Listeria innocua}

Probab=99.87  E-value=1.5e-22  Score=148.78  Aligned_cols=126  Identities=15%  Similarity=0.128  Sum_probs=84.8

Q ss_pred             ccccCceeEEEEEEEeccCCcccccccccC----ceEEEEEEeC----------CCCCeeeCCCccCCCCCHHHHHHHHH
Q 031268           16 RYEDQLRLVAGCIPYKFEKNDENKNCKMEK----KVLVLMISTP----------NRDDLVFPKGGWEDDETVSEAACREA   81 (162)
Q Consensus        16 ~~~~~~r~~v~~i~~~~~~~~~~~~~~~~~----~~~vLLv~r~----------~~~~W~lPgG~ve~gEt~~eaa~REl   81 (162)
                      +|....+++|+++++..++          +    +++|||++|.          ..+.|.||||++|+|||+++||+||+
T Consensus        21 ~~~~p~~~~v~~vv~~~~~----------~~~~~~~~vLL~~r~~~~~~g~~~~~~g~w~lPGG~ve~gEs~~~aa~REl   90 (187)
T 3i9x_A           21 EFRTPDGYTSDMILTTVKE----------LNGKPTLHILLIKRSLTNAEGKPNMEGGKWAVPGGFVDENESAEQAAEREL   90 (187)
T ss_dssp             --CCCSEEEEEEEEEEEEE----------ETTEEEEEEEEEECCSBCTTSSBCTTTTCEECSEEECCTTSCHHHHHHHHH
T ss_pred             HcCCcccceEEEEEEEEcC----------CCCCCCCEEEEEEEccccccccCCCCCCEEECCceeCCCCCCHHHHHHHHH
Confidence            3445556999999998764          3    4799999992          35679999999999999999999999


Q ss_pred             HHHhCcccccCCCCeeeEEeecccccccCCCCCCceEEEEEEEEecccc--cCCcccccceeEEeeHhHHhhh-hccccc
Q 031268           82 LEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEEL--ESWPEQANYKRIWVSNNHFLWR-KHSNLV  158 (162)
Q Consensus        82 ~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~--~~~~~~~~~~~~W~~~~ea~~~-~~~~l~  158 (162)
                      +||||+.+... ..++.+.+.....       .......+|.+.+....  ...+..+..+++|++++++.++ +....+
T Consensus        91 ~EEtGl~~~~~-~~l~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~l~~~~~  162 (187)
T 3i9x_A           91 EEETSLTDIPL-IPFGVFDKPGRDP-------RGWIISRAFYAIVPPEALEKRAAGDDAAEIGLFPMTEALELPLAFDHL  162 (187)
T ss_dssp             HHHHCCCSCCC-EEEEEECCTTSST-------TSSEEEEEEEEECCHHHHHHHHHSTTTTTEEEEEHHHHTTSCBSTTHH
T ss_pred             HHHHCCCCcce-EEEEEEcCCccCC-------CCCEEEEEEEEEEcCcccCCcCCCCceeEEEEEeHHHcccCCCCccHH
Confidence            99999988766 4677665433221       11223334444333221  1122344578999999999875 444443


Q ss_pred             c
Q 031268          159 G  159 (162)
Q Consensus       159 ~  159 (162)
                      .
T Consensus       163 ~  163 (187)
T 3i9x_A          163 D  163 (187)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3grn_A MUTT related protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 1.70A {Methanosarcina mazei}

Probab=99.87  E-value=1.9e-21  Score=138.14  Aligned_cols=109  Identities=17%  Similarity=0.182  Sum_probs=81.0

Q ss_pred             CceeEEEEEEEeccCCcccccccccCceEEEEEEeCCC-----CCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCC
Q 031268           20 QLRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNR-----DDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDEN   94 (162)
Q Consensus        20 ~~r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~~-----~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~   94 (162)
                      .++.+|++|+++.+             ++|||++|...     +.|.||||++|+|||+.+||+||++||||+.+... .
T Consensus         6 ~~~~~v~~vi~~~~-------------~~vLL~~r~~~~~~~~g~w~~PgG~ve~gE~~~~aa~REl~EE~Gl~~~~~-~   71 (153)
T 3grn_A            6 PYIISVYALIRNEK-------------GEFLLLRRSENSRTNAGKWDLPGGKVNPDESLKEGVAREVWEETGITMVPG-D   71 (153)
T ss_dssp             CEEEEEEEEEECTT-------------CCEEEEEECTTCSSSTTCEECSEEECCTTCCHHHHHHHHHHHHHCCCCCCC-S
T ss_pred             ceEEEEEEEEEcCC-------------CcEEEEEEcCCCCCCCCeEECceeecCCCCCHHHHHHhhhhhhhCcEeecc-e
Confidence            45677888887654             48999998753     67999999999999999999999999999998766 5


Q ss_pred             CeeeEEeecccccccCCCCCCceEEEEEEEEecccccCCcccccceeEEeeHhHHhhh
Q 031268           95 PLGEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWVSNNHFLWR  152 (162)
Q Consensus        95 ~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~W~~~~ea~~~  152 (162)
                      .++.+.+.....         ....++|.+........ +..+..+++|++++++.++
T Consensus        72 ~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~-~~~e~~~~~W~~~~el~~~  119 (153)
T 3grn_A           72 IAGQVNFELTEK---------KVIAIVFDGGYVVADVK-LSYEHIEYSWVSLEKILGM  119 (153)
T ss_dssp             EEEEEEEECSSC---------EEEEEEEEEEECCCCCC-CCTTEEEEEEECHHHHTTC
T ss_pred             EEEEEEEecCCc---------eEEEEEEEEEecCCcEe-cCCCcceEEEEEHHHhhhc
Confidence            777766544321         23456666654432222 2344578999999999886

>1rya_A GDP-mannose mannosyl hydrolase; GDP-glucose, nudix, nudix Mg-complex; HET: GDP; 1.30A {Escherichia coli} SCOP: d.113.1.5 PDB: 2gt2_A 2gt4_A* 2i8t_A* 2i8u_A*

Probab=99.86  E-value=2.6e-21  Score=137.85  Aligned_cols=127  Identities=19%  Similarity=0.192  Sum_probs=85.5

Q ss_pred             CceeEEEEEEEeccCCcccccccccCceEEEEEEeCC---CCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccc--cCCC
Q 031268           20 QLRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPN---RDDLVFPKGGWEDDETVSEAACREALEEAGVRGL--LDEN   94 (162)
Q Consensus        20 ~~r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~---~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~--~~~~   94 (162)
                      .++.+|++|+++.+             ++|||++|..   .+.|.||||++++|||+.+||+||++||||+.+.  .. .
T Consensus        16 ~~~~~v~~vi~~~~-------------~~vLl~~r~~~~~~g~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~-~   81 (160)
T 1rya_A           16 TPLVSLDFIVENSR-------------GEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAG-Q   81 (160)
T ss_dssp             SCEEEEEEEEECTT-------------SCEEEEEECSSSSTTSEECCEEECCTTCCHHHHHHHHHHHHHSSCCCGGGS-E
T ss_pred             CcEEEEEEEEEcCC-------------CEEEEEeccCCCCCCEEECCccccCCCCCHHHHHHHHHHHHHCCCCCcccc-e
Confidence            45678888888643             4799999976   4679999999999999999999999999999853  33 4


Q ss_pred             CeeeEEeecccccccCCCCCCceEEEEEEEEecccccCCcccccceeEEeeHhHHhhh--hcccccccc
Q 031268           95 PLGEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWVSNNHFLWR--KHSNLVGMI  161 (162)
Q Consensus        95 ~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~W~~~~ea~~~--~~~~l~~~v  161 (162)
                      .++.+.+....... ..........++|.+............+..+++|++++++.++  ..+.+++++
T Consensus        82 ~~~~~~~~~~~~~~-~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~~l  149 (160)
T 1rya_A           82 FYGVWQHFYDDNFS-GTDFTTHYVVLGFRFRVSEEELLLPDEQHDDYRWLTSDALLASDNVHANSRAYF  149 (160)
T ss_dssp             EEEEEEEEESSBTT-BSSSCEEEEEEEEEEECCGGGCCCCSSSEEEEEEECHHHHHHCTTBCHHHHGGG
T ss_pred             EEEEEeEEEccccc-CCCcCcEEEEEEEEEEcCccccccCCCccceEEEecHHHHhhccccCHHHHHHH
Confidence            56666543321100 0000112345677776654322223345578999999999975  455555543

>4dyw_A MUTT/nudix family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Burkholderia pseudomallei}

Probab=99.86  E-value=1.1e-21  Score=140.26  Aligned_cols=120  Identities=15%  Similarity=0.075  Sum_probs=85.3

Q ss_pred             cCceeEEEEEEEeccCCcccccccccCceEEEEEEeCC---CCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCC
Q 031268           19 DQLRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPN---RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENP   95 (162)
Q Consensus        19 ~~~r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~---~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~   95 (162)
                      ..++.+|++|+++ +             ++|||++|.+   .+.|.||||++|+|||+.+||+||++||||+.+... ..
T Consensus        26 ~~~~~~v~~vi~~-~-------------~~vLL~~r~~~~~~~~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~-~~   90 (157)
T 4dyw_A           26 EQPRVGCGAAIVR-D-------------GRILLIKRKRAPEAGCWGLPGGKVDWLEPVERAVCREIEEELGIALERA-TL   90 (157)
T ss_dssp             CCCEEEEEEEEEE-T-------------TEEEEEEECSSSSTTCEECCEEECCTTCCHHHHHHHHHHHHHSCEEESC-EE
T ss_pred             CCceeEEEEEEEE-C-------------CEEEEEEecCCCCCCEEECCcccCCCCCCHHHHHHHHHHHHHCcccccC-cE
Confidence            3467888888887 3             3899999973   467999999999999999999999999999998766 56


Q ss_pred             eeeEEeecccccccCCCCCCceEEEEEEEEeccccc-CCcccccceeEEeeHhHHhhhhccccccc
Q 031268           96 LGEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEELE-SWPEQANYKRIWVSNNHFLWRKHSNLVGM  160 (162)
Q Consensus        96 l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~-~~~~~~~~~~~W~~~~ea~~~~~~~l~~~  160 (162)
                      ++.+.+.....       ......++|.+....... .....+..+++|++++++.+.+.+..+.+
T Consensus        91 ~~~~~~~~~~~-------~~~~~~~~f~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~l~~~~~~~  149 (157)
T 4dyw_A           91 LCVVDHIDAAN-------GEHWVAPVYLAHAFSGEPRVVEPDRHEALGWFALDDLPQPLTHATRIA  149 (157)
T ss_dssp             EEEEEEEETTT-------TEEEEEEEEEESEEESCCCCSCTTTEEEEEEEETTSCCSSBCHHHHHH
T ss_pred             EEEEEeeccCC-------CcEEEEEEEEEEEcCCCcccCCCCcEeEEEEECHHHcccccCHHHHHH
Confidence            77665544211       112244566664433222 22234457899999999988765555443

>2yyh_A MUTT domain, 8-OXO-DGTPase domain; nudix family protein, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.80A {Aquifex aeolicus}

Probab=99.86  E-value=2.8e-21  Score=135.07  Aligned_cols=113  Identities=19%  Similarity=0.143  Sum_probs=81.5

Q ss_pred             CceeEEEEEEEeccCCcccccccccCceE--EEEEEeCCC-CCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCe
Q 031268           20 QLRLVAGCIPYKFEKNDENKNCKMEKKVL--VLMISTPNR-DDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPL   96 (162)
Q Consensus        20 ~~r~~v~~i~~~~~~~~~~~~~~~~~~~~--vLLv~r~~~-~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l   96 (162)
                      .++.+|++|+++.+.           +++  |||++|... +.|.||||++++|||+.+||+||++||||+.+... ..+
T Consensus         7 ~p~~~v~~vi~~~~~-----------~~~~~vLl~~r~~~~~~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~-~~~   74 (139)
T 2yyh_A            7 TPLLATDVIIRLWDG-----------ENFKGIVLIERKYPPVGLALPGGFVEVGERVEEAAAREMREETGLEVRLH-KLM   74 (139)
T ss_dssp             CCEEEEEEEEEEEET-----------TEEEEEEEEEECSSSCSEECCEEECCTTCCHHHHHHHHHHHHHCCCCEEE-EEE
T ss_pred             CCeEEEEEEEEEEcC-----------CCcEEEEEEEecCCCCcEECccccCCCCCCHHHHHHHHHHHHHCCCcccc-eEE
Confidence            457889999998543           356  999998754 45999999999999999999999999999997765 456


Q ss_pred             eeEEeecccccccCCCCCCceEEEEEEEEecccccCCcccccceeEEeeHhHHh--hhh
Q 031268           97 GEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWVSNNHFL--WRK  153 (162)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~W~~~~ea~--~~~  153 (162)
                      +.+.+....       .......++|.+...+.  ..+..+..+++|++++++.  .+.
T Consensus        75 ~~~~~~~~~-------~~~~~~~~~f~~~~~~~--~~~~~e~~~~~W~~~~el~~~~l~  124 (139)
T 2yyh_A           75 GVYSDPERD-------PRAHVVSVVWIGDAQGE--PKAGSDAKKVKVYRLEEIPLDKLV  124 (139)
T ss_dssp             EEECCTTSC-------TTSCEEEEEEEEEEESC--CCCCTTEEEEEEECTTSCCGGGBC
T ss_pred             EEECCCCcC-------CCceEEEEEEEEecCCc--cCCCCCcceEEEEEHHHCCHhhcC
Confidence            655433221       11234566777776332  2233445789999999998  553

>3id9_A MUTT/nudix family protein; hydrolase, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.55A {Bacillus thuringiensis str}

Probab=99.86  E-value=3.7e-21  Score=138.96  Aligned_cols=117  Identities=21%  Similarity=0.168  Sum_probs=79.0

Q ss_pred             cCceeEEEEEEEeccCCcccccccccCceEEEEEEeCC-CCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCee
Q 031268           19 DQLRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPN-RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLG   97 (162)
Q Consensus        19 ~~~r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~-~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~   97 (162)
                      ..++..|++|+++.              ++|||++|.. .+.|.||||++|+|||+.+||+||++||||+.+... ..++
T Consensus        20 ~~~~~~v~~ii~~~--------------~~vLL~~r~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~-~~~~   84 (171)
T 3id9_A           20 NIMQVRVTGILIED--------------EKVLLVKQKVANRDWSLPGGRVENGETLEEAMIREMREETGLEVKIK-KLLY   84 (171)
T ss_dssp             --CEEEEEEEEEET--------------TEEEEEECSSTTCCEECCEEECCTTCCHHHHHHHHHHHHHCCCEEEE-EEEE
T ss_pred             CceEEEEEEEEEEC--------------CEEEEEEEECCCCeEECCCccCCCCCCHHHHHHHHHHHHHCCccccc-eEEE
Confidence            34567787777763              3899999876 678999999999999999999999999999998765 4666


Q ss_pred             eEEeecccccccCCCCCCceEEEEEEEEecccccCC-----cccccceeEEeeHhHHhhh-hcccccc
Q 031268           98 EWEFRSKSRMNSCNSKEGGCRGYMFALEVTEELESW-----PEQANYKRIWVSNNHFLWR-KHSNLVG  159 (162)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~-----~~~~~~~~~W~~~~ea~~~-~~~~l~~  159 (162)
                      .+.+.....         .....+|.+.........     ...+..+++|++++++.++ +.+.++.
T Consensus        85 ~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~~~~~~  143 (171)
T 3id9_A           85 VCDKPDASP---------SLLHITFLLERIEGEITLPSNEFDHNPIHDVQMVPINELSYYGFSETFIN  143 (171)
T ss_dssp             EEEETTSSS---------CEEEEEEEEEEC-------------CCCCCEEEEETGGGGGGTCCTTCSH
T ss_pred             EEcccCCCC---------cEEEEEEEEEEcCCcccCCccCCCcCeeeeEEEEeHHHHhhCCCCHHHHH
Confidence            665443221         123445555543321111     2234578999999999986 4444443

>3shd_A Phosphatase NUDJ; nudix fold, nudix motif, hydrolase, (D)NDP/(D)NTP binding, dephosphorylation; 2.50A {Escherichia coli} PDB: 3dku_A

Probab=99.86  E-value=4.5e-21  Score=135.93  Aligned_cols=94  Identities=22%  Similarity=0.279  Sum_probs=70.4

Q ss_pred             eEEEEEEeC--CCCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeeeEEeecccccccCCCCCCceEEEEEEE
Q 031268           47 VLVLMISTP--NRDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMFAL  124 (162)
Q Consensus        47 ~~vLLv~r~--~~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~  124 (162)
                      ++|||++|.  ..+.|.||||++|+|||+.+||+||++||||+.+... ..++.+.+.....        .....++|.+
T Consensus        16 ~~vLl~~r~~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~-~~~~~~~~~~~~~--------~~~~~~~f~~   86 (153)
T 3shd_A           16 GKFLVVEETINGKALWNQPAGHLEADETLVEAAARELWEETGISAQPQ-HFIRMHQWIAPDK--------TPFLRFLFAI   86 (153)
T ss_dssp             TEEEEEEEEETTEEEEECSEEECCTTCCHHHHHHHHHHHHHCCCCCCC-EEEEEEEECCTTS--------CCEEEEEEEE
T ss_pred             CEEEEEEecCCCCCCEECCeEEeCCCCCHHHHHHHHHHHHHCcccccC-cEEEEEEEecCCC--------ceEEEEEEEE
Confidence            389999984  3456999999999999999999999999999998766 5677665544321        1234577877


Q ss_pred             Eecccc-cCCcccccceeEEeeHhHH
Q 031268          125 EVTEEL-ESWPEQANYKRIWVSNNHF  149 (162)
Q Consensus       125 ~~~~~~-~~~~~~~~~~~~W~~~~ea  149 (162)
                      ...... ....+.+..+++|++++++
T Consensus        87 ~~~~~~~~~~~~~E~~~~~W~~~~el  112 (153)
T 3shd_A           87 ELEQICPTQPHDSDIDCCRWVSAEEI  112 (153)
T ss_dssp             ECSSCCCCCCCSTTCCEEEEECHHHH
T ss_pred             EccccCcCCCCcccceeeEEecHHHh
Confidence            765532 2223445688999999999

>3gwy_A Putative CTP pyrophosphohydrolase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.00A {Bacteroides fragilis} SCOP: d.113.1.0

Probab=99.86  E-value=7.6e-21  Score=133.07  Aligned_cols=101  Identities=16%  Similarity=0.046  Sum_probs=72.8

Q ss_pred             eEEEEEEeCC------CCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeeeEEeecccccccCCCCCCceEEE
Q 031268           47 VLVLMISTPN------RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGY  120 (162)
Q Consensus        47 ~~vLLv~r~~------~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  120 (162)
                      ++|||++|..      .+.|.||||++++|||+.+||+||++||||+.+... ..++.+.+....         .....+
T Consensus        17 ~~vLL~~r~~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EE~Gl~~~~~-~~~~~~~~~~~~---------~~~~~~   86 (140)
T 3gwy_A           17 EKYLCVQRGQTKFSYTSFRYEFPGGKVEEGESLQEALQREIMEEMDYVIEVG-EKLLTVHHTYPD---------FEITMH   86 (140)
T ss_dssp             TEEEEEEC---------CCEECSEEECCTTCCHHHHHHHHHHHHHCCCEEEE-EEEEEEECCCSS---------CCEEEE
T ss_pred             CEEEEEEecCCCCCCCCCeEECCCccCCCCCCHHHHHHHHHHHhhCcEEEec-eEEEEEEEEeCC---------ceEEEE
Confidence            3899999864      356999999999999999999999999999998766 466666544332         123567


Q ss_pred             EEEEEecccccCCcccccceeEEeeHhHHhhh-hcccccc
Q 031268          121 MFALEVTEELESWPEQANYKRIWVSNNHFLWR-KHSNLVG  159 (162)
Q Consensus       121 ~f~~~~~~~~~~~~~~~~~~~~W~~~~ea~~~-~~~~l~~  159 (162)
                      +|.+.......  ...+..+++|++++++.++ +.+..+.
T Consensus        87 ~f~~~~~~~~~--~~~E~~~~~W~~~~el~~~~~~~~~~~  124 (140)
T 3gwy_A           87 AFLCHPVGQRY--VLKEHIAAQWLSTREMAILDWAEADKP  124 (140)
T ss_dssp             EEEEEECCSCC--CCCSSCEEEEECHHHHTTSCBCGGGHH
T ss_pred             EEEEEecCCcc--cccccceeEeccHHHHhhCCCCcccHH
Confidence            78777654322  2234578999999999987 4444443

>3fcm_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, 11180J, structural genomics; 2.20A {Clostridium perfringens atcc 13124}

Probab=99.85  E-value=7.1e-21  Score=140.89  Aligned_cols=131  Identities=15%  Similarity=0.152  Sum_probs=80.0

Q ss_pred             ccccCceeEEEEEEEeccCCcccccccccCceEEEEEEeCCCCCeeeCCCccCCCCCHHHHHHHHHHHHhCcc-cccCCC
Q 031268           16 RYEDQLRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVR-GLLDEN   94 (162)
Q Consensus        16 ~~~~~~r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~-~~~~~~   94 (162)
                      |.....+.++++++++.+            +++|||++++..+.|.||||++|+|||+.+||+||++||||+. +.....
T Consensus        39 r~~~~~h~~~~~vv~~~~------------~~~vLL~~r~~~g~w~lPgG~ve~gEs~~eaa~REl~EEtGl~~~~~~~~  106 (197)
T 3fcm_A           39 RDNTIAHLTSSAFAVNKE------------RNKFLMIHHNIYNSWAWTGGHSDNEKDQLKVAIKELKEETGVKNPTPLLD  106 (197)
T ss_dssp             TTCSSEEEEEEEEEECTT------------SCEEEEEEETTTTEEECEEEECTTCCBHHHHHHHHHHHHHCCSSCEESCS
T ss_pred             ccCCCccEEEEEEEEECC------------CCEEEEEEecCCCCEECCccccCCCCCHHHHHHHHHHHHHCCCcccccCC
Confidence            333466788888888765            2599999998888999999999999999999999999999998 543211


Q ss_pred             CeeeEEe---ecccccccCCCCCCceEEEEEEEEeccccc-CCcccccceeEEeeHhHHhhhh-cccccc
Q 031268           95 PLGEWEF---RSKSRMNSCNSKEGGCRGYMFALEVTEELE-SWPEQANYKRIWVSNNHFLWRK-HSNLVG  159 (162)
Q Consensus        95 ~l~~~~~---~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~-~~~~~~~~~~~W~~~~ea~~~~-~~~l~~  159 (162)
                      .+..+.+   .......... ....+...+|.+....... .....+..+++|++++++.+++ .++++.
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~  175 (197)
T 3fcm_A          107 KAFALDVLTVNGHIKRGKYV-SSHLHLNLTYLIECSEDETLMLKEDENSGVMWIPFNEISKYCSEPHMIP  175 (197)
T ss_dssp             SCSEEEEEEECCEEETTEEE-CCEEEEEEEEEEECCTTSCCCCCC----CEEEEEGGGHHHHCCCGGGHH
T ss_pred             CceEEEEeeecCccccCccc-CCceeEEEEEEEEeCCCcccCCCcccccceEEccHHHHHhhcCCHHHHH
Confidence            2222221   1110000000 0001112445555443222 2233456789999999999874 444443

>3f6a_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.02A {Clostridium perfringens atcc 13124}

Probab=99.85  E-value=5.2e-21  Score=136.74  Aligned_cols=118  Identities=19%  Similarity=0.077  Sum_probs=79.1

Q ss_pred             ceeEEEEEEEeccCCcccccccccCceEEEEEEeCCCCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeeeEE
Q 031268           21 LRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWE  100 (162)
Q Consensus        21 ~r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~~~  100 (162)
                      .+.+|++|+++ +             ++|||++++..+.|.||||++|+|||+.+||+||++||||+.+... ..++.+.
T Consensus         5 ~~~~v~~vi~~-~-------------~~vLL~~r~~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~-~~~~~~~   69 (159)
T 3f6a_A            5 RHFTVSVFIVC-K-------------DKVLLHLHKKAKKMLPLGGHIEVNELPEEACIREAKEEAGLNVTLY-NPIDINL   69 (159)
T ss_dssp             SCEEEEEEEEE-T-------------TEEEEEECSSSCCEECEEEECCTTCCHHHHHHHHHHHHHCCCCEEC-CCCCHHH
T ss_pred             ceEEEEEEEEE-C-------------CEEEEEEcCCCCeEECCccCccCCCCHHHHHHHHHHHHhCCCceec-ccccccc
Confidence            35677888887 3             3899999988889999999999999999999999999999998766 3454221


Q ss_pred             -----------eecccccccC-CCCCCceEEEEEEEEecccccCCcccccceeEEeeHhHHhhhh
Q 031268          101 -----------FRSKSRMNSC-NSKEGGCRGYMFALEVTEELESWPEQANYKRIWVSNNHFLWRK  153 (162)
Q Consensus       101 -----------~~~~~~~~~~-~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~W~~~~ea~~~~  153 (162)
                                 +......... ......+..++|.+..........+.+..+++|++++++.++.
T Consensus        70 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~  134 (159)
T 3f6a_A           70 KKSCDLSGEKLLINPIHTILGDVSPNHSHIDFVYYATTTSFETSPEIGESKILKWYSKEDLKNAH  134 (159)
T ss_dssp             HHHHHHTTCEEECCCSEEEEECSSSSSCEEEEEEEEECSCSCCCCCTTSCCCEEEECSSSSTTCS
T ss_pred             cccccccccccccCccccccccCCCCceEEEEEEEEEeCCCCcCCCCCcccceEEeeHHHHhhCc
Confidence                       0000000000 0001122345677766543333334456789999999998873

>2w4e_A MUTT/nudix family protein; ADP-ribose pyrophosphatase, hydrolase; 2.00A {Deinococcus radiodurans}

Probab=99.85  E-value=2e-21  Score=137.15  Aligned_cols=109  Identities=19%  Similarity=0.090  Sum_probs=70.5

Q ss_pred             eEEEEEEEeccCCcccccccccCceEEEEEEeCCC----CCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeee
Q 031268           23 LVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNR----DDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGE   98 (162)
Q Consensus        23 ~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~~----~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~   98 (162)
                      .+|++++++.+             ++|||+++++.    +.|.||||++|+|||+++||+||++||||+.+... ..++.
T Consensus         6 ~~v~vi~~~~~-------------~~vLLv~~~r~~~~~~~w~~PgG~ve~gEt~~~aa~REl~EEtGl~~~~~-~~l~~   71 (145)
T 2w4e_A            6 RAVFILPVTAQ-------------GEAVLIRQFRYPLRATITEIVAGGVEKGEDLGAAAARELLEEVGGAASEW-VPLPG   71 (145)
T ss_dssp             EEEEEEEEETT-------------SEEEEEEEEETTTTEEEEECEEEECCTTCCHHHHHHHHHHHHHCEECSEE-EECCC
T ss_pred             CEEEEEEEcCC-------------CEEEEEEEEecCCCCCEEEeCCccCCCCCCHHHHHHHHHHHhhCCccCeE-EEEec
Confidence            46777887654             37999876432    26999999999999999999999999999987644 34444


Q ss_pred             EEeecccccccCCCCCCceEEEEEEEEe-cccccCCcccccceeEEeeHhHHhhhhc
Q 031268           99 WEFRSKSRMNSCNSKEGGCRGYMFALEV-TEELESWPEQANYKRIWVSNNHFLWRKH  154 (162)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~-~~~~~~~~~~~~~~~~W~~~~ea~~~~~  154 (162)
                      +.. ...        ......++|.+.. ........+.+..+++|++++++.+++.
T Consensus        72 ~~~-~~~--------~~~~~~~~f~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~  119 (145)
T 2w4e_A           72 FYP-QPS--------ISGVVFYPLLALGVTLGAAQLEDTETIERVVLPLAEVYRMLE  119 (145)
T ss_dssp             BBS-CTT--------TCCCEEEEEEEEEEEEC--------CEEEEEEEHHHHHHHHH
T ss_pred             CcC-CCC--------ccCceEEEEEEEecccCCCCCCCCCeEEEEEEeHHHHHHHHH
Confidence            321 111        1112455665542 2111122344457899999999998754

>3q1p_A Phosphohydrolase (MUTT/nudix family protein); asymmetric dimer, RNA exonuclease, CDP-CHO pyrophosphatase; 1.80A {Bacillus cereus} PDB: 3q4i_A

Probab=99.85  E-value=3.3e-21  Score=143.77  Aligned_cols=120  Identities=12%  Similarity=0.081  Sum_probs=82.4

Q ss_pred             CceeEEEEEEEeccCCcccccccccCceEEEEEEeCCCCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeeeE
Q 031268           20 QLRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEW   99 (162)
Q Consensus        20 ~~r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~~   99 (162)
                      .++..|++++++ +             ++|||+++...+.|.||||++|+|||+.+||+||++||||+.+... ..++.+
T Consensus        66 ~~~~~v~~vv~~-~-------------~~vLLv~r~~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~v~~~-~~l~~~  130 (205)
T 3q1p_A           66 TPKVDIRAVVFQ-N-------------EKLLFVKEKSDGKWALPGGWADVGYTPTEVAAKEVFEETGYEVDHF-KLLAIF  130 (205)
T ss_dssp             CCEEEEEEEEEE-T-------------TEEEEEEC---CCEECSEEECCTTCCHHHHHHHHHHHHHSEEEEEE-EEEEEE
T ss_pred             CCcceEEEEEEE-C-------------CEEEEEEEcCCCcEECCcCccCCCCCHHHHHHHHHHHHHCCccccc-eEEEEE
Confidence            346778888886 3             3899999987788999999999999999999999999999998766 466766


Q ss_pred             EeecccccccCCCCCCceEEEEEEEEecccccCCcccccceeEEeeHhHHhhhh-cccccc
Q 031268          100 EFRSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWVSNNHFLWRK-HSNLVG  159 (162)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~W~~~~ea~~~~-~~~l~~  159 (162)
                      ........    +.......++|.+....... .++.+..+++|++++++.++. .+..++
T Consensus       131 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-~~~~E~~~~~w~~~~el~~l~~~~~~~~  186 (205)
T 3q1p_A          131 DKEKHQPS----PSATHVYKIFIGCEIIGGEK-KTSIETEEVEFFGENELPNLSIARNTED  186 (205)
T ss_dssp             EHHHHSCC----CCSSCEEEEEEEEEEEEECC-CCCTTSCCEEEECTTSCCCBCTTTCCHH
T ss_pred             eccccCCC----CCCceEEEEEEEEEecCCcc-CCCCcceEEEEEeHHHhhhcCCCccHHH
Confidence            54322110    01122345666666543322 233456889999999998773 444433

>1sjy_A MUTT/nudix family protein; nudix fold, alpha-beta-alpha sandwich, structural genomics, BSGC structure funded by NIH; 1.39A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1soi_A 1su2_A* 1sz3_A*

Probab=99.85  E-value=1.1e-20  Score=134.53  Aligned_cols=115  Identities=21%  Similarity=0.101  Sum_probs=82.3

Q ss_pred             CceeEEEEEEEeccCCcccccccccCceEEEEEEeCC-------CCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccC
Q 031268           20 QLRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPN-------RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLD   92 (162)
Q Consensus        20 ~~r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~-------~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~   92 (162)
                      ..+.++++|+++.+             ++|||++|..       .+.|.||||++|+|||+.+||+||++||||+.+...
T Consensus        11 ~~~~~~~~vi~~~~-------------~~vLl~~r~~~~~~~~~~~~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~   77 (159)
T 1sjy_A           11 VELRAAGVVLLNER-------------GDILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREACEETGLRVRPV   77 (159)
T ss_dssp             CCEEEEEEEEBCTT-------------CCEEEEEESCC----CCCCCEECSEEECCTTSCHHHHHHHHHHHHHSCCEEEE
T ss_pred             eEEEeEEEEEEeCC-------------CCEEEEEecccCcCCCCCCeEECCccccCCCCCHHHHHHHHHHHHHCccceee
Confidence            34566777777543             4799999874       367999999999999999999999999999998765


Q ss_pred             CCCeeeEEeecccccccCCCCCCceEEEEEEEEecccc-cCC-cccccceeEEeeHhHHhhhhccc
Q 031268           93 ENPLGEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEEL-ESW-PEQANYKRIWVSNNHFLWRKHSN  156 (162)
Q Consensus        93 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~-~~~-~~~~~~~~~W~~~~ea~~~~~~~  156 (162)
                       ..++.+.+.....        .....++|.+...... ... .+.+..+++|++++++.+++.++
T Consensus        78 -~~l~~~~~~~~~~--------~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~  134 (159)
T 1sjy_A           78 -KFLGAYLGRFPDG--------VLILRHVWLAEPEPGQTLAPAFTDEIAEASFVSREDFAQLYAAG  134 (159)
T ss_dssp             -EEEEEEEEECTTS--------CEEEEEEEEEEECSSCCCCCCCCSSEEEEEEECHHHHHHHHHTT
T ss_pred             -EEEEEEecccCCC--------ceEEEEEEEEEccCCCccccCCCCceeEEEEecHHHHHHhhhcc
Confidence             4667665432110        1235677777764432 222 33445789999999999885443

>3exq_A Nudix family hydrolase; protein structure initiative II(PSI II), NYSGXRC, 11180K, structural genomics; 2.00A {Lactobacillus brevis atcc 367}

Probab=99.85  E-value=7.3e-21  Score=136.48  Aligned_cols=119  Identities=22%  Similarity=0.206  Sum_probs=82.5

Q ss_pred             CceeEEEEEEEeccCCcccccccccCceEEEEEEeCCC---CCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCe
Q 031268           20 QLRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNR---DDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPL   96 (162)
Q Consensus        20 ~~r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~~---~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l   96 (162)
                      ..+.++.+++++.+            .++|||++|...   +.|+||||++++|||+.+||+||++||||+.+... ..+
T Consensus         8 ~~~~~v~~vi~~~~------------~~~vLL~~r~~~~~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~-~~~   74 (161)
T 3exq_A            8 PVELVTMVMVTDPE------------TQRVLVEDKVNVPWKAGHSFPGGHVEVGEPCATAAIREVFEETGLRLSGV-TFC   74 (161)
T ss_dssp             CEEEEEEEEEBCTT------------TCCEEEECCCCCTTTCSBBCCCCBCCTTSCHHHHHHHHHHHHHCCEESCC-EEE
T ss_pred             CceEEEEEEEEeCC------------CCEEEEEEccCCCCCCCEEccceecCCCCCHHHHHHHHHHHhhCcEecCC-cEE
Confidence            35667777776654            258999988743   45889999999999999999999999999998766 577


Q ss_pred             eeEEeecccccccCCCCCCceEEEEEEEEecccccCCcccccceeEEeeHhHHhhh-hccccccc
Q 031268           97 GEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWVSNNHFLWR-KHSNLVGM  160 (162)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~W~~~~ea~~~-~~~~l~~~  160 (162)
                      +.+.+.....       ......++|.+......  ....+..+++|++++++.++ +.+.++.+
T Consensus        75 ~~~~~~~~~~-------~~~~~~~~~~~~~~~~~--~~~~e~~~~~W~~~~el~~~~~~~~~~~~  130 (161)
T 3exq_A           75 GTCEWFDDDR-------QHRKLGLLYRASNFTGT--LKASAEGQLSWLPITALTRENSAASLPEF  130 (161)
T ss_dssp             EEEEEECSSC-------SSEEEEEEEEECCEESC--CCGGGTTTEEEECGGGCCTTTBCTTHHHH
T ss_pred             EEEecccCCC-------CeEEEEEEEEEeccCCc--cCCCccceEEEeeHHHhhhCccChHHHHH
Confidence            7776554221       11234566665443322  22334468999999999886 44554443

>3q93_A 7,8-dihydro-8-oxoguanine triphosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 1.80A {Homo sapiens} PDB: 1iry_A 3zr0_A* 3zr1_A

Probab=99.85  E-value=1.1e-20  Score=137.74  Aligned_cols=96  Identities=17%  Similarity=0.160  Sum_probs=70.1

Q ss_pred             eEEEEEEeCC---CCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeeeEEeecccccccCCCCCCceEEEEEE
Q 031268           47 VLVLMISTPN---RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMFA  123 (162)
Q Consensus        47 ~~vLLv~r~~---~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~  123 (162)
                      ++|||++|..   .+.|.||||++|+|||+++||+||++||||+.+... ..++.+.+.....       ......++|.
T Consensus        36 ~~vLL~~r~~~~~~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~-~~l~~~~~~~~~~-------~~~~~~~~f~  107 (176)
T 3q93_A           36 QRVLLGMKKRGFGAGRWNGFGGKVQEGETIEDGARRELQEESGLTVDAL-HKVGQIVFEFVGE-------PELMDVHVFC  107 (176)
T ss_dssp             SEEEEEEECSSTTTTSEECEEEECCTTSCHHHHHHHHHHHHHSCEESCC-EEEEEEEEEETTC-------SCEEEEEEEE
T ss_pred             CEEEEEEEcCCCCCCeEECceecCCCCCCHHHHHHHHHHHHHCCcceee-EEEEEEEEEcCCC-------CcEEEEEEEE
Confidence            4899998865   467999999999999999999999999999998766 5777776554321       1123456676


Q ss_pred             EEecccccCCcccccceeEEeeHhHHhhh
Q 031268          124 LEVTEELESWPEQANYKRIWVSNNHFLWR  152 (162)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~W~~~~ea~~~  152 (162)
                      +.......  ...+..+++|++++++.++
T Consensus       108 ~~~~~~~~--~~~e~~~~~W~~~~el~~~  134 (176)
T 3q93_A          108 TDSIQGTP--VESDEMRPCWFQLDQIPFK  134 (176)
T ss_dssp             ESCEESCC--CCCSSEEEEEEETTCCCGG
T ss_pred             EECCCCCc--CCCcceeeEEeeHHHcccc
Confidence            64332211  2223467799999999865

>2kdv_A RNA pyrophosphohydrolase; nudix family, magnesium, manganese, zinc; NMR {Escherichia coli} PDB: 2kdw_A

Probab=99.85  E-value=1.9e-20  Score=135.03  Aligned_cols=120  Identities=19%  Similarity=0.182  Sum_probs=81.7

Q ss_pred             cCceeEEEEEEEeccCCcccccccccCceEEEEEEeCCCCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeee
Q 031268           19 DQLRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGE   98 (162)
Q Consensus        19 ~~~r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~   98 (162)
                      ..+|.+|++++++.+             ++|||+++...+.|.||||++++|||+.+||+||++||||+.+... ..++.
T Consensus         5 ~~~~~~v~~~i~~~~-------------~~vLl~~r~~~~~w~~p~G~~e~gE~~~~aa~RE~~EE~G~~~~~~-~~~~~   70 (164)
T 2kdv_A            5 DGYRPNVGIVICNRQ-------------GQVMWARRFGQHSWQFPQGGINPGESAEQAMYRELFEEVGLSRKDV-RILAS   70 (164)
T ss_dssp             SSEEEEEEEEEECTT-------------SEEEEEEETTCCCEECCEEECCTTCCHHHHHHHHHHHHHCCCGGGE-EEEEE
T ss_pred             CCCCcEEEEEEEccC-------------CEEEEEEEcCCCeEECCeeecCCCCCHHHHHHHHHHHHHCCCccce-EEEEE
Confidence            357888989988754             4899999987788999999999999999999999999999997655 45555


Q ss_pred             EE----eecccccccC--CCCCCceEEEEEEEEeccccc--C---CcccccceeEEeeHhHHhhh
Q 031268           99 WE----FRSKSRMNSC--NSKEGGCRGYMFALEVTEELE--S---WPEQANYKRIWVSNNHFLWR  152 (162)
Q Consensus        99 ~~----~~~~~~~~~~--~~~~~~~~~~~f~~~~~~~~~--~---~~~~~~~~~~W~~~~ea~~~  152 (162)
                      +.    |.........  .........++|.+.......  .   .++.+..+++|++++++.+.
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~~~~E~~~~~W~~~~e~~~~  135 (164)
T 2kdv_A           71 TRNWLRYKLPKRLVRWDTKPVCIGQKQKWFLLQLVSGDAEINMQTSSTPEFDGWRWVSYWYPVRQ  135 (164)
T ss_dssp             CSSCEEEECCTTTCCTTSSSCCCEEEEEEEEEEESSCGGGCCSCSSSSCSEEEEEEEETTTGGGG
T ss_pred             ecceeEEecCcceeeeccCcccccceeEEEEEEecCCccccccCCCCCchhceEEEecHHHhhhh
Confidence            32    2221110000  000112245778877653211  1   12335678999999998764

>2b0v_A Nudix hydrolase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.55A {Nitrosomonas europaea} SCOP: d.113.1.1

Probab=99.85  E-value=1.1e-20  Score=133.62  Aligned_cols=98  Identities=21%  Similarity=0.240  Sum_probs=71.3

Q ss_pred             eEEEEEEeCCCC---CeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeeeEEeecccccccCCCCCCceEEEEEE
Q 031268           47 VLVLMISTPNRD---DLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMFA  123 (162)
Q Consensus        47 ~~vLLv~r~~~~---~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~  123 (162)
                      ++|||+++...+   .|.||||++|+|||+.+||+||++||||+.+... ..++.+.+.....       ......++|.
T Consensus        19 ~~vLl~~r~~~~~~~~w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~-~~~~~~~~~~~~~-------~~~~~~~~f~   90 (153)
T 2b0v_A           19 DKYLLVEEIPRGTAIKLNQPAGHLEPGESIIQACSREVLEETGHSFLPE-VLTGIYHWTCASN-------GTTYLRFTFS   90 (153)
T ss_dssp             TEEEEEEECSSSSCCEEECSEEECCTTSCHHHHHHHHHHHHHSEEEEEE-EEEEEEEEEETTT-------TEEEEEEEEE
T ss_pred             CEEEEEEEcCCCCCCeEECCCcCcCCCCCHHHHHHHHHHHhhCcEeccc-eEEEEEEEeCCCC-------CcEEEEEEEE
Confidence            389999987544   6999999999999999999999999999998766 5677665544321       1122345676


Q ss_pred             EEeccccc-CCcccccceeEEeeHhHHhhh
Q 031268          124 LEVTEELE-SWPEQANYKRIWVSNNHFLWR  152 (162)
Q Consensus       124 ~~~~~~~~-~~~~~~~~~~~W~~~~ea~~~  152 (162)
                      +....... ...+.+..+++|++++++.++
T Consensus        91 ~~~~~~~~~~~~~~e~~~~~W~~~~el~~~  120 (153)
T 2b0v_A           91 GQVVSFDPDRKLDTGIVRAAWFSIDEIRAK  120 (153)
T ss_dssp             EEEEEECTTSCCCTTEEEEEEEEHHHHHHT
T ss_pred             EEeCCCCCCCCCCCCeeeEEEecHHHHhhh
Confidence            66543222 223444578999999999985

>2o1c_A DATP pyrophosphohydrolase; nudix NTP hydrolase NTP pyrophosphohydrolase MUTT dihydroneo triphosphate pyrophosphohydrolase folate biosynthesis; 1.80A {Escherichia coli} PDB: 2o5w_A

Probab=99.85  E-value=2.7e-20  Score=130.87  Aligned_cols=123  Identities=18%  Similarity=0.107  Sum_probs=80.8

Q ss_pred             eEEEEEEEeccCCcccccccccCceEEEEEEeCC-CCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCC-CCeeeEE
Q 031268           23 LVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPN-RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDE-NPLGEWE  100 (162)
Q Consensus        23 ~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~-~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~-~~l~~~~  100 (162)
                      .+|++++++.+            +++|||++++. .+.|.||||++|+|||+.+||+||++||||+.+.... ..++.+.
T Consensus        10 ~~v~~~i~~~~------------~~~vLl~~r~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~   77 (150)
T 2o1c_A           10 VSILVVIYAQD------------TKRVLMLQRRDDPDFWQSVTGSVEEGETAPQAAMREVKEEVTIDVVAEQLTLIDCQR   77 (150)
T ss_dssp             EEEEEEEEETT------------TCEEEEEECSSSTTCEESEEEECCTTCCHHHHHHHHHHHHHCCCHHHHTCCEEEEEE
T ss_pred             eEEEEEEEeCC------------CCEEEEEEecCCCCceECCccccCCCCCHHHHHHHHHHHHhCCCccccceeEEeeec
Confidence            57888888754            25899999876 5789999999999999999999999999999976531 2333322


Q ss_pred             ee-----cccccccCCCCCCceEEEEEEEEecccccCCcccccceeEEeeHhHHhhh-hcccccc
Q 031268          101 FR-----SKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWVSNNHFLWR-KHSNLVG  159 (162)
Q Consensus       101 ~~-----~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~W~~~~ea~~~-~~~~l~~  159 (162)
                      ..     ..... .++........++|.+........ ...+..+++|++++++.++ ..+..+.
T Consensus        78 ~~~~~~~~~~~~-~~~~~~~~~~~~~f~~~~~~~~~~-~~~E~~~~~W~~~~el~~~~~~~~~~~  140 (150)
T 2o1c_A           78 TVEFEIFSHLRH-RYAPGVTRNTESWFCLALPHERQI-VFTEHLAYKWLDAPAAAALTKSWSNRQ  140 (150)
T ss_dssp             EEEEECCGGGGG-GBCTTCCEEEEEEEEEEESSCCCC-CCSSSSCEEEEEHHHHHHHCSCHHHHH
T ss_pred             eeeeeeeccccc-ccCCCCcceEEEEEEEEcCCCCCc-ChhHhhccEeecHHHHHhhhcCHHHHH
Confidence            11     00000 000011234567787776543222 2244578999999999987 3344333

>2fb1_A Conserved hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG; 2.50A {Bacteroides thetaiotaomicron} SCOP: a.4.5.68 d.113.1.6

Probab=99.84  E-value=2.6e-21  Score=146.52  Aligned_cols=116  Identities=16%  Similarity=0.189  Sum_probs=82.8

Q ss_pred             CceeEEEEEEEeccCCcccccccccCceEEEEEEeCC---CCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCe
Q 031268           20 QLRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPN---RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPL   96 (162)
Q Consensus        20 ~~r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~---~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l   96 (162)
                      .++.+|++|++..++          ++++|||++|..   .+.|.||||++|+|||+++||+||++||||+.+... ..+
T Consensus        11 ~p~v~v~~vi~~~~~----------~~~~vLLv~r~~~~~~g~w~lPGG~ve~gEs~~~Aa~REl~EEtGl~~~~~-~~l   79 (226)
T 2fb1_A           11 TFYLGIDCIIFGFNE----------GEISLLLLKRNFEPAMGEWSLMGGFVQKDESVDDAAKRVLAELTGLENVYM-EQV   79 (226)
T ss_dssp             CEEEEEEEEEEEEET----------TEEEEEEEECSSSSSTTCEECEEEECCTTSCHHHHHHHHHHHHHCCCSCEE-EEE
T ss_pred             CCeEEEEEEEEEEeC----------CCCEEEEEECcCCCCCCCEECCeeccCCCCCHHHHHHHHHHHHHCCCCCce-EEE
Confidence            457889999997543          368999999875   467999999999999999999999999999998765 467


Q ss_pred             eeEEeecccccccCCCCCCceEEEEEEEEecccccCCcccccceeEEeeHhHHhhhh
Q 031268           97 GEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWVSNNHFLWRK  153 (162)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~W~~~~ea~~~~  153 (162)
                      +.+.......       .......+|.+.+.......+..+..+++|++++++.++.
T Consensus        80 ~~~~~~~r~~-------~~~~v~~~y~a~~~~~~~~~~~~e~~~~~W~~~~el~~l~  129 (226)
T 2fb1_A           80 GAFGAIDRDP-------GERVVSIAYYALININEYDRELVQKHNAYWVNINELPALI  129 (226)
T ss_dssp             EEECCTTSSS-------SSCEEEEEEEEECCTTSSCHHHHHHTTEEEEETTSCCCBS
T ss_pred             EEeCCCCcCC-------CceEEEEEEEEEecCcccccCCccccceEEEEHHHhhhcc
Confidence            7665332211       1223344566655432221222345789999999998764

>2azw_A MUTT/nudix family protein; MUTT/nudix ,enterococcus faecalis, structural genomics, PSI, structure initiative; HET: 1PE; 1.90A {Enterococcus faecalis} SCOP: d.113.1.1

Probab=99.84  E-value=1.3e-20  Score=132.52  Aligned_cols=112  Identities=25%  Similarity=0.331  Sum_probs=78.0

Q ss_pred             ceeEEEEEEEeccCCcccccccccCceEEEEEEeCCCCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeeeEE
Q 031268           21 LRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWE  100 (162)
Q Consensus        21 ~r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~~~  100 (162)
                      .+..+++|+++.+            +++|||+++. .+.|.||||++++|||+++||+||++||||+.+... ..++.+.
T Consensus        17 ~~~~~~~vi~~~~------------~~~vLl~~r~-~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~-~~~~~~~   82 (148)
T 2azw_A           17 TRYAAYIIVSKPE------------NNTMVLVQAP-NGAYFLPGGEIEGTETKEEAIHREVLEELGISVEIG-CYLGEAD   82 (148)
T ss_dssp             ECCEEEEECEEGG------------GTEEEEEECT-TSCEECSEEECCTTCCHHHHHHHHHHHHHSEEEEEE-EEEEEEE
T ss_pred             eeeEEEEEEECCC------------CCeEEEEEcC-CCCEeCCCcccCCCCCHHHHHHHHHHHHhCCeeEee-eEEEEEE
Confidence            4567778888753            3589999874 478999999999999999999999999999998765 4566543


Q ss_pred             ---eecccccccCCCCCCceEEEEEEEEecccccCCcccccceeEEeeHhHHhhhh
Q 031268          101 ---FRSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWVSNNHFLWRK  153 (162)
Q Consensus       101 ---~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~W~~~~ea~~~~  153 (162)
                         +......      ......++|.+........ +..+..+++|++++++.+++
T Consensus        83 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~-~~~e~~~~~W~~~~el~~~~  131 (148)
T 2azw_A           83 EYFYSNHRQT------AYYNPGYFYVANTWRQLSE-PLERTNTLHWVAPEEAVRLL  131 (148)
T ss_dssp             EEEEETTTTE------EEEEEEEEEEEEEEEECSS-CC-CCSEEEEECHHHHHHHB
T ss_pred             EEEcCCCCCc------ceEEEEEEEEEEcCcCCcC-CCCceeeEEEeeHHHHHhhh
Confidence               2211100      0112456677665433222 22345689999999999874

>3h95_A Nucleoside diphosphate-linked moiety X motif 6; NUDT6, nudix, hydrolase, GFG, GFG-1, FGF2AS, structural GENO structural genomics consortium, SGC; HET: FLC; 1.70A {Homo sapiens}

Probab=99.84  E-value=2.1e-20  Score=138.67  Aligned_cols=112  Identities=15%  Similarity=0.224  Sum_probs=73.6

Q ss_pred             CceeEEEEEEEeccCCcccccccccCceEEEEEEeCC--CCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCee
Q 031268           20 QLRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPN--RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLG   97 (162)
Q Consensus        20 ~~r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~--~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~   97 (162)
                      ..+..|++++++.++            ++|||++++.  .+.|.||||++|+|||+++||+||++||||+.+... ..++
T Consensus        24 ~~~v~v~~~v~~~~~------------~~vLL~~r~~~~~g~w~lPGG~ve~gEs~~~aA~REl~EEtGl~~~~~-~l~~   90 (199)
T 3h95_A           24 SHQVGVAGAVFDEST------------RKILVVQDRNKLKNMWKFPGGLSEPEEDIGDTAVREVFEETGIKSEFR-SVLS   90 (199)
T ss_dssp             --CCEEEEEEEETTT------------TEEEEEEESSSSTTSBBCCEEECCTTCCHHHHHHHHHHHHHCCCEEEE-EEEE
T ss_pred             cccceEEEEEEeCCC------------CEEEEEEEcCCCCCCEECCccccCCCCCHHHHHHHHHHHHhCCccccc-eEEE
Confidence            446777788887642            5999999876  578999999999999999999999999999997754 3444


Q ss_pred             eEE-eecccccccCCCCCCceEEEEEEEEec--ccccCCcccccceeEEeeHhHHhhh
Q 031268           98 EWE-FRSKSRMNSCNSKEGGCRGYMFALEVT--EELESWPEQANYKRIWVSNNHFLWR  152 (162)
Q Consensus        98 ~~~-~~~~~~~~~~~~~~~~~~~~~f~~~~~--~~~~~~~~~~~~~~~W~~~~ea~~~  152 (162)
                      ... +.....        ......+|.+.+.  .......+.+..+++|++++++.++
T Consensus        91 ~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~  140 (199)
T 3h95_A           91 IRQQHTNPGA--------FGKSDMYIICRLKPYSFTINFCQEECLRCEWMDLNDLAKT  140 (199)
T ss_dssp             EEECC-----------------CEEEEEEEEESCCCCCCCTTTEEEEEEEEHHHHHHC
T ss_pred             EEeeecCCCC--------ceeEEEEEEEEEcCCCcccCCCccceeeeEEEeHHHHhhh
Confidence            322 111110        0112233333332  2222223445688999999999975

>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}

Probab=99.84  E-value=1.6e-20  Score=138.26  Aligned_cols=112  Identities=21%  Similarity=0.251  Sum_probs=80.6

Q ss_pred             ceeEEEEEEEeccCCcccccccccCceEEEEEEeCC---CCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCee
Q 031268           21 LRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPN---RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLG   97 (162)
Q Consensus        21 ~r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~---~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~   97 (162)
                      ++.+|++|+++ +             ++|||+++..   .+.|.||||++|+|||+++||+||++||||+.+... ..++
T Consensus        39 ~~~~v~~ii~~-~-------------~~vLL~~r~~~~~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~-~~~~  103 (189)
T 3cng_A           39 PKVIVGCIPEW-E-------------NKVLLCKRAIAPYRGKWTLPAGFMENNETLVQGAARETLEEANARVEIR-ELYA  103 (189)
T ss_dssp             CEEEEEEEEEE-T-------------TEEEEEEESSSSSTTCEECSEEECCTTCCHHHHHHHHHHHHHCCCEEEE-EEEE
T ss_pred             CceEEEEEEEe-C-------------CEEEEEEccCCCCCCeEECceeeccCCCCHHHHHHHHHHHHHCCccccc-eeEE
Confidence            45678788876 3             3899999875   567999999999999999999999999999997755 3555


Q ss_pred             eEEeecccccccCCCCCCceEEEEEEEEecccccCCcccccceeEEeeHhHHh--hhhcccccc
Q 031268           98 EWEFRSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWVSNNHFL--WRKHSNLVG  159 (162)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~W~~~~ea~--~~~~~~l~~  159 (162)
                      .+.+...           ....++|.+....... .++.+..+++|++++++.  .+..+.+++
T Consensus       104 ~~~~~~~-----------~~~~~~f~~~~~~~~~-~~~~E~~~~~W~~~~el~~~~l~~~~~~~  155 (189)
T 3cng_A          104 VYSLPHI-----------SQVYMLFRAKLLDLDF-FPGIESLEVRLFGEQEIPWNDIAFRVIHD  155 (189)
T ss_dssp             EEEEGGG-----------TEEEEEEEEEECCSCC-CCCTTEEEEEEECTTTCCGGGBSCHHHHH
T ss_pred             EEecCCC-----------cEEEEEEEEEeCCCcc-CCCccceeEEEECHHHcCcccccChHHHH
Confidence            5544321           1256677776654322 234455789999999998  444444433

>3hhj_A Mutator MUTT protein; niaid, ssgcid, decode, UW, SBRI, infectious diseases, hydrol structural genomics; 2.10A {Bartonella henselae}

Probab=99.84  E-value=5.3e-20  Score=131.21  Aligned_cols=100  Identities=20%  Similarity=0.076  Sum_probs=69.5

Q ss_pred             eEEEEEEeCCC----CCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCC--eeeEEeecccccccCCCCCCceEEE
Q 031268           47 VLVLMISTPNR----DDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENP--LGEWEFRSKSRMNSCNSKEGGCRGY  120 (162)
Q Consensus        47 ~~vLLv~r~~~----~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~  120 (162)
                      ++|||++|...    +.|.||||++|+|||+.+||+||++||||+.+... ..  ++.+.+....         .....+
T Consensus        41 ~~vLL~~r~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~-~~~~~~~~~~~~~~---------~~~~~~  110 (158)
T 3hhj_A           41 NRVLLTQRPEGKSLAGLWEFPGGKVEQGETPEASLIRELEEELGVHVQAD-NLFPLTFASHGYET---------FHLLMP  110 (158)
T ss_dssp             SEEEEEECCCTTSCCCCCBCCEEECCTTCCHHHHHHHHHHHHHCCBCCGG-GCEEEEEEEEECSS---------CEEEEE
T ss_pred             CEEEEEEeCCCCCCCCEEECCceeecCCCCHHHHHHHHHHHHhCcEeecc-eEEEEEEEeeccCC---------cEEEEE
Confidence            48999998753    57999999999999999999999999999997654 23  3333332221         123456


Q ss_pred             EEEEEecccccCCcccccceeEEeeHhHHhhh-hccccc
Q 031268          121 MFALEVTEELESWPEQANYKRIWVSNNHFLWR-KHSNLV  158 (162)
Q Consensus       121 ~f~~~~~~~~~~~~~~~~~~~~W~~~~ea~~~-~~~~l~  158 (162)
                      +|.+.....  .....+..+++|++++++.++ +.+..+
T Consensus       111 ~~~~~~~~~--~~~~~e~~~~~W~~~~el~~~~~~~~~~  147 (158)
T 3hhj_A          111 LYFCSHYKG--VAQGREGQNLKWIFINDLDKYPMPEADK  147 (158)
T ss_dssp             EEEESCCBS--CCCCTTSCEEEEEEGGGGGGSCCCTTTH
T ss_pred             EEEEEECCC--ccCCccccceEEEcHHHHhhCCCCcchH
Confidence            666654432  222334578999999999886 334333

>2pqv_A MUTT/nudix family protein; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 1.63A {Streptococcus pneumoniae}

Probab=99.84  E-value=1e-20  Score=134.35  Aligned_cols=112  Identities=13%  Similarity=0.100  Sum_probs=78.0

Q ss_pred             cCceeEEEEEEEeccCCcccccccccCceEEEEEEeCCCCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeee
Q 031268           19 DQLRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGE   98 (162)
Q Consensus        19 ~~~r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~   98 (162)
                      ..++.++++|+++.              ++|||++|  .+.|.||||++++|||+++||+||++||||+.+... ..++.
T Consensus        16 ~~~~~~~~~ii~~~--------------~~vLl~~r--~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~-~~~~~   78 (154)
T 2pqv_A           16 TVFGVRATALIVQN--------------HKLLVTKD--KGKYYTIGGAIQVNESTEDAVVREVKEELGVKAQAG-QLAFV   78 (154)
T ss_dssp             EEEEEEEEECCEET--------------TEEEEEEE--TTEEECEEEECBTTCCHHHHHHHHHHHHHCCCEEEE-EEEEE
T ss_pred             ceEeEEEEEEEEEC--------------CEEEEEec--CCeEECcccCcCCCCCHHHHHHHHHHHHhCCeeeec-eEEEE
Confidence            35577888888863              38999998  678999999999999999999999999999998765 45555


Q ss_pred             EEeecccccccCCCCCCceEEEEEEEEecccccC--CcccccceeEEeeHhHHhhh
Q 031268           99 WEFRSKSRMNSCNSKEGGCRGYMFALEVTEELES--WPEQANYKRIWVSNNHFLWR  152 (162)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~--~~~~~~~~~~W~~~~ea~~~  152 (162)
                      +.+......     .......++|.+........  .++.+..+++|++++++.++
T Consensus        79 ~~~~~~~~~-----~~~~~~~~~f~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~  129 (154)
T 2pqv_A           79 VENRFEVDG-----VSYHNIEFHYLVDLLEDAPLTMQEDEKRQPCEWIDLDKLQNI  129 (154)
T ss_dssp             EEEEEEETT-----EEEEEEEEEEEEEESSCCCSEEEETTEEEEEEEEEGGGGGGS
T ss_pred             EeeeecCCC-----CcceEEEEEEEEEecCCCCcccCCCCceeeEEEeEHHHHhhc
Confidence            443222111     01112345677765443221  12333578999999999986

>2jvb_A Protein PSU1, mRNA-decapping enzyme subunit 2; DCP2, mRNA decay, cytoplasm, hydrolase, manganese, metal-binding, mRNA processing; NMR {Saccharomyces cerevisiae}

Probab=99.83  E-value=2.2e-20  Score=131.39  Aligned_cols=108  Identities=18%  Similarity=0.156  Sum_probs=73.5

Q ss_pred             EEEEEEEeccCCcccccccccCceEEEEEEeCCCCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeeeEEeec
Q 031268           24 VAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRS  103 (162)
Q Consensus        24 ~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~~~~~~  103 (162)
                      ++++++++.+            .++|||+++...+.|.||||++++|||+++||+||++||||+.+... ..+..+....
T Consensus         6 ~~~~~i~~~~------------~~~vLl~~r~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~-~~~~~~~~~~   72 (146)
T 2jvb_A            6 VRGAAIFNEN------------LSKILLVQGTESDSWSFPRGKISKDENDIDCCIREVKEEIGFDLTDY-IDDNQFIERN   72 (146)
T ss_dssp             CEEEEEBCTT------------SSEEEEECCSSSSCCBCCEECCCSSSCHHHHHHHHHHHHTSCCCSSS-SCSSCEEEEE
T ss_pred             EEEEEEEeCC------------CCEEEEEEEcCCCcEECCcccCCCCCCHHHHHHHHHHHHHCCCchHh-cccccccccc
Confidence            4667777654            25899999887788999999999999999999999999999987644 2333332221


Q ss_pred             ccccccCCCCCCceEEEEEEEEe-ccc--ccCCcccccceeEEeeHhHHhhhhc
Q 031268          104 KSRMNSCNSKEGGCRGYMFALEV-TEE--LESWPEQANYKRIWVSNNHFLWRKH  154 (162)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~f~~~~-~~~--~~~~~~~~~~~~~W~~~~ea~~~~~  154 (162)
                      ...          ...++|.+.. ...  ....++.+..+++|++++++.+++.
T Consensus        73 ~~~----------~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~  116 (146)
T 2jvb_A           73 IQG----------KNYKIFLISGVSEVFNFKPQVRNEIDKIEWFDFKKISKTMY  116 (146)
T ss_dssp             ETT----------EEEEEEEECCCCSSSCCCCCCSSSCCCEEEEEHHHHHTGGG
T ss_pred             cCC----------ceEEEEEEEeccccccCCcCCcchhheeEEeEHHHHHhhhc
Confidence            110          1233443332 111  1112244567899999999998754

>3ees_A Probable pyrophosphohydrolase; nudix, RNA pyrophosphohydrolase; 1.90A {Bdellovibrio bacteriovorus} PDB: 3eeu_A 3ef5_A* 3ffu_A*

Probab=99.83  E-value=7e-20  Score=129.23  Aligned_cols=94  Identities=19%  Similarity=0.194  Sum_probs=70.3

Q ss_pred             eEEEEEEeCCC----CCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeeeEEeecccccccCCCCCCceEEEEE
Q 031268           47 VLVLMISTPNR----DDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMF  122 (162)
Q Consensus        47 ~~vLLv~r~~~----~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f  122 (162)
                      ++|||++|...    +.|.||||++|+|||+.+||+||++||||+.+... ..++.+.+.....         ....++|
T Consensus        33 ~~vLl~~r~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~-~~~~~~~~~~~~~---------~~~~~~~  102 (153)
T 3ees_A           33 GKILVGQRPENNSLAGQWEFPGGKIENGETPEEALARELNEELGIEAEVG-ELKLACTHSYGDV---------GILILFY  102 (153)
T ss_dssp             TEEEEEECCTTSTTTTCEECSEEECCTTCCHHHHHHHHHHHHHSCEEECC-CEEEEEEEEETTE---------EEEEEEE
T ss_pred             CEEEEEEeCCCCCCCCeEECCceeeCCCCCHHHHHHHHHHHHHCCccccC-ceEEEEEEecCCC---------eEEEEEE
Confidence            48999998764    67999999999999999999999999999998766 4666655444321         1245666


Q ss_pred             EEEecccccCCcccccceeEEeeHhHHhhh
Q 031268          123 ALEVTEELESWPEQANYKRIWVSNNHFLWR  152 (162)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~W~~~~ea~~~  152 (162)
                      .+......  ....+..+++|++++++.++
T Consensus       103 ~~~~~~~~--~~~~e~~~~~W~~~~el~~~  130 (153)
T 3ees_A          103 EILYWKGE--PRAKHHMMLEWIHPEELKHR  130 (153)
T ss_dssp             EECEEESC--CCCSSSSEEEEECGGGGGGS
T ss_pred             EEEECCCC--cCCCccceEEEecHHHhhhC
Confidence            66544322  22334578999999999886

>3gz5_A MUTT/nudix family protein; DNA binding protein, nudix domain, WHTH domain; 2.20A {Shewanella oneidensis} PDB: 3gz6_A* 3gz8_A*

Probab=99.83  E-value=1.2e-20  Score=144.13  Aligned_cols=114  Identities=14%  Similarity=0.149  Sum_probs=82.2

Q ss_pred             CceeEEEEEEEeccCCcccccccccCceEEEEEEeCC---CCCeeeCCCccCC--CCCHHHHHHHHHHHHhCcccccCCC
Q 031268           20 QLRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPN---RDDLVFPKGGWED--DETVSEAACREALEEAGVRGLLDEN   94 (162)
Q Consensus        20 ~~r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~---~~~W~lPgG~ve~--gEt~~eaa~REl~EEtGl~~~~~~~   94 (162)
                      .+.++|+||++..++          ++++|||++|..   .+.|.||||++++  |||+++||+||++||||+.+... .
T Consensus        20 ~p~v~v~~vi~~~~~----------~~~~vLLv~R~~~~~~g~W~lPGG~ve~~~gEs~~~AA~REl~EEtGl~~~~~-~   88 (240)
T 3gz5_A           20 AQLLTVDAVLFTYHD----------QQLKVLLVQRSNHPFLGLWGLPGGFIDETCDESLEQTVLRKLAEKTAVVPPYI-E   88 (240)
T ss_dssp             -CEEEEEEEEEEEET----------TEEEEEEEECCSSSSTTCEECSEEECCTTTCSBHHHHHHHHHHHHHSSCCSEE-E
T ss_pred             CCccEEEEEEEEEeC----------CCcEEEEEECcCCCCCCCEECCccccCCCCCcCHHHHHHHHHHHHHCCCCCce-e
Confidence            456899999997553          368999999875   4679999999999  99999999999999999998766 5


Q ss_pred             CeeeEEeecccccccCCCCCCceEEEEEEEEecccccCCcccccceeEEeeHhHHhh
Q 031268           95 PLGEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWVSNNHFLW  151 (162)
Q Consensus        95 ~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~W~~~~ea~~  151 (162)
                      +++.+.......       .......+|.+.+..........+..+++|++++++..
T Consensus        89 ~l~~~~~~~r~~-------~~~~~~~~y~a~~~~~~~~~~~~e~~~~~W~~~~el~~  138 (240)
T 3gz5_A           89 QLCTVGNNSRDA-------RGWSVTVCYTALMSYQACQIQIASVSDVKWWPLADVLQ  138 (240)
T ss_dssp             EEEEEEESSSST-------TSCEEEEEEEEECCHHHHHHHHTTCTTEEEEEHHHHTT
T ss_pred             eEEEeCCCccCC-------CceEEEEEEEEEecccccCCCCCcccceEEecHHHccc
Confidence            777776543321       12234455555554322221233457899999999964

>2yvp_A NDX2, MUTT/nudix family protein; nudix protein, ADP-ribose, FAD, hydrol structural genomics, NPPSFA; HET: RBY; 1.66A {Thermus thermophilus} PDB: 2yvn_A 2yvm_A* 2yvo_A*

Probab=99.83  E-value=1.3e-20  Score=137.51  Aligned_cols=112  Identities=16%  Similarity=0.035  Sum_probs=76.7

Q ss_pred             CceeEEEEEEEeccCCcccccccccCceEEEEEEeCC----CCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCC
Q 031268           20 QLRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPN----RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENP   95 (162)
Q Consensus        20 ~~r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~----~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~   95 (162)
                      ..+.+|++++++.+             ++|||+++.+    .+.|.||||++|+|||+++||+||++||||+.+... ..
T Consensus        39 ~~~~~v~v~i~~~~-------------~~vLL~~r~~~~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~-~~  104 (182)
T 2yvp_A           39 GPVAASFVLPVTER-------------GTALLVRQYRHPTGKFLLEVPAGKVDEGETPEAAARRELREEVGAEAETL-IP  104 (182)
T ss_dssp             SSCEEEEEEEBCTT-------------SEEEEEEEEEGGGTEEEEECCEEECCTTCCHHHHHHHHHHHHHCEECSCE-EE
T ss_pred             ecCCEEEEEEEcCC-------------CEEEEEEeccCCCCCcEEEeccccCCCCcCHHHHHHHHHHHHhCCCcccE-EE
Confidence            33457777777644             4899998853    356999999999999999999999999999987654 34


Q ss_pred             eeeEEeecccccccCCCCCCceEEEEEEEEecc--cccCCcccccceeEEeeHhHHhhhhc
Q 031268           96 LGEWEFRSKSRMNSCNSKEGGCRGYMFALEVTE--ELESWPEQANYKRIWVSNNHFLWRKH  154 (162)
Q Consensus        96 l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~--~~~~~~~~~~~~~~W~~~~ea~~~~~  154 (162)
                      ++.+.....         ......++|.+....  ......+.+..+++|++++++.+++.
T Consensus       105 l~~~~~~~~---------~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~  156 (182)
T 2yvp_A          105 LPSFHPQPS---------FTAVVFHPFLALKARVVTPPTLEEGELLESLELPLTEVYALLA  156 (182)
T ss_dssp             CCCBCSCTT---------TBCCEEEEEEECSCEECSCCCCCTTCCEEEEEEEHHHHHHHHH
T ss_pred             EEEEeCCCC---------ccccEEEEEEEeccccCCCCCCCCCceEEEEEEEHHHHHHHHH
Confidence            554322111         112355667665322  11122344567899999999998854

>3fk9_A Mutator MUTT protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.50A {Bacillus halodurans}

Probab=99.83  E-value=1.7e-20  Score=138.14  Aligned_cols=99  Identities=21%  Similarity=0.193  Sum_probs=70.0

Q ss_pred             EEEEEEeCCCCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeeeEEeecccccccCCCCCCceEEEEEEEEec
Q 031268           48 LVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMFALEVT  127 (162)
Q Consensus        48 ~vLLv~r~~~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~  127 (162)
                      +|||++++..+.|.||||++|+|||+++||+||++||||+.+... ..++.+.+........    ......++|.+...
T Consensus        16 ~vLL~~r~~~g~W~lPGG~ve~gEs~~~aa~REl~EEtGl~~~~~-~~~~~~~~~~~~~~~~----~~~~~~~~f~a~~~   90 (188)
T 3fk9_A           16 QVLLLQKPRRGWWVAPGGKMEAGESILETVKREYWEETGITVKNP-ELKGIFSMVIFDEGKI----VSEWMLFTFKATEH   90 (188)
T ss_dssp             EEEEEECTTTCCEECCEEECCTTCCHHHHHHHHHHHHHSCEESSC-EEEEEEEEEEEETTEE----EEEEEEEEEEESCE
T ss_pred             EEEEEEeCCCCeEECCeecccCCCCHHHHHHHHHHHHHCCCCCCc-eEEEEEEEEecCCCcc----eEEEEEEEEEEECC
Confidence            899999988889999999999999999999999999999998766 4677766544321100    00113455555432


Q ss_pred             ccccCCcccccceeEEeeHhHHhhh
Q 031268          128 EELESWPEQANYKRIWVSNNHFLWR  152 (162)
Q Consensus       128 ~~~~~~~~~~~~~~~W~~~~ea~~~  152 (162)
                      ... ..+..+..+++|++++++.++
T Consensus        91 ~~~-~~~~~e~~~~~W~~~~el~~~  114 (188)
T 3fk9_A           91 EGE-MLKQSPEGKLEWKKKDEVLEL  114 (188)
T ss_dssp             ESC-CCSEETTEEEEEEEGGGGGGS
T ss_pred             CCC-CcCCCCCEeEEEEEHHHhhhC
Confidence            221 122333468999999999875

>3o8s_A Nudix hydrolase, ADP-ribose pyrophosphatase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.27A {Streptococcus suis}

Probab=99.83  E-value=1.7e-20  Score=140.07  Aligned_cols=119  Identities=12%  Similarity=0.068  Sum_probs=83.1

Q ss_pred             ceeEEEEEEEeccCCcccccccccCceEEEEEEeCCCCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeeeEE
Q 031268           21 LRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWE  100 (162)
Q Consensus        21 ~r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~~~  100 (162)
                      ++..|++++++.              ++|||+++. .+.|.||||++|+|||+.+||+||++||||+.+... ..++.+.
T Consensus        69 ~~~~v~~vv~~~--------------~~vLLvrr~-~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~-~~l~~~~  132 (206)
T 3o8s_A           69 PKLDTRAAIFQE--------------DKILLVQEN-DGLWSLPGGWCDVDQSVKDNVVKEVKEEAGLDVEAQ-RVVAILD  132 (206)
T ss_dssp             CEEEEEEEEEET--------------TEEEEEECT-TSCEECSEEECCTTSCHHHHHHHHHHHHHCEEEEEE-EEEEEEE
T ss_pred             CCccEEEEEEEC--------------CEEEEEEec-CCeEECCeeccCCCCCHHHHHHHHHHHHHCCcceee-eEEEEEe
Confidence            457788888863              389999988 778999999999999999999999999999998766 4677665


Q ss_pred             eecccccccCCCCCCceEEEEEEEEecccccCCcccccceeEEeeHhHHhhhh-ccccccc
Q 031268          101 FRSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWVSNNHFLWRK-HSNLVGM  160 (162)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~W~~~~ea~~~~-~~~l~~~  160 (162)
                      +.......    .......++|.+....... .++.+..+++|++++++.++. .+.++++
T Consensus       133 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~-~~~~E~~~~~w~~~~el~~l~~~~~~~~~  188 (206)
T 3o8s_A          133 KHKNNPAK----SAHRVTKVFILCRLLGGEF-QPNSETVASGFFSLDDLPPLYLGKNTAEQ  188 (206)
T ss_dssp             HHHHCC---------CEEEEEEEEEEEEECC-CCCSSCSEEEEECTTSCCCBCTTTCCHHH
T ss_pred             ccccCCCC----CCceEEEEEEEEEecCCee-cCCCCceEEEEEeHHHhhhccCCCchHHH
Confidence            33221110    1112345666666543322 233456789999999999873 4444443

>1k2e_A Nudix homolog; nudix/MUTT-like fold, mixed alpha/beta, dimer, putative NUDI hydrolase, structural genomics, unknown function; 1.80A {Pyrobaculum aerophilum} SCOP: d.113.1.1 PDB: 1jrk_A 1k26_A

Probab=99.83  E-value=2.5e-20  Score=132.92  Aligned_cols=56  Identities=27%  Similarity=0.271  Sum_probs=50.0

Q ss_pred             eEEEEEEEeccCCcccccccccCceEEEEEEeCCCCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccC
Q 031268           23 LVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLD   92 (162)
Q Consensus        23 ~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~   92 (162)
                      .++++|+++ +             ++|||++++..+.|.||||++|+|||+++||+||++||||+++...
T Consensus         2 ~~~~~vi~~-~-------------~~vLL~~r~~~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~   57 (156)
T 1k2e_A            2 IVTSGVLVE-N-------------GKVLLVKHKRLGVYIYPGGHVEHNETPIEAVKREFEEETGIVVEPI   57 (156)
T ss_dssp             EEEEEECEE-T-------------TEEEEEECTTTCSEECSEEECCTTCCHHHHHHHHHHHHHSEEEEEC
T ss_pred             eEEEEEEEE-C-------------CEEEEEEEcCCCcEECCeeecCCCCCHHHHHHHHHHHHHCCcceec
Confidence            567788887 3             3899999987788999999999999999999999999999998765

>3r03_A Nudix hydrolase; structural genomics, PSI2, protein structure INIT NEW YORK SGX research center for structural genomics, nysgx; HET: ADP; 2.49A {Rhodospirillum rubrum} SCOP: d.113.1.0

Probab=99.82  E-value=1.7e-19  Score=126.31  Aligned_cols=113  Identities=19%  Similarity=0.064  Sum_probs=76.7

Q ss_pred             eeEEEEEEEeccCCcccccccccCceEEEEEEeCCC----CCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCee
Q 031268           22 RLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNR----DDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLG   97 (162)
Q Consensus        22 r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~~----~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~   97 (162)
                      +.++++++++.+             ++|||++|...    +.|.||||++++|||+.+||+||++||||+.+... ....
T Consensus         8 ~~~~~~vi~~~~-------------~~vLl~~r~~~~~~~g~w~lPgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~-~~~~   73 (144)
T 3r03_A            8 LLVTAAALIDPD-------------GRVLLAQRPPGKSLAGLWEFPGGKLEPGETPEAALVRELAEELGVDTRAS-CLAP   73 (144)
T ss_dssp             EEEEEEEEBCTT-------------SCEEEEECCTTSSSTTCEECSEEECCTTCCHHHHHHHHHHHHHCCBCCGG-GCEE
T ss_pred             eEEEEEEEEcCC-------------CEEEEEEeCCCCCCCCcEECCCcEecCCCCHHHHHHHHHHHHhCceeecc-ceEE
Confidence            445556666543             47999998753    67999999999999999999999999999997654 2222


Q ss_pred             --eEEeecccccccCCCCCCceEEEEEEEEecccccCCcccccceeEEeeHhHHhhh-hcccccc
Q 031268           98 --EWEFRSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWVSNNHFLWR-KHSNLVG  159 (162)
Q Consensus        98 --~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~W~~~~ea~~~-~~~~l~~  159 (162)
                        .+.+....         .....++|.+......  ....+..+++|++++++.++ +.+..+.
T Consensus        74 ~~~~~~~~~~---------~~~~~~~~~~~~~~~~--~~~~e~~~~~W~~~~el~~~~~~~~~~~  127 (144)
T 3r03_A           74 LAFASHSYDT---------FHLLMPLYACRSWRGR--ATAREGQTLAWVRAERLREYPMPPADLP  127 (144)
T ss_dssp             EEEEEEECSS---------SEEEEEEEEECCCBSC--CCCCSSCEEEEECGGGGGGSCCCTTTTT
T ss_pred             EEeeeccCCC---------eEEEEEEEEEEecCCc--cCCCCcceEEEEeHHHhccCCCCcchHH
Confidence              23222211         1235566776554332  22334578999999999987 4444443

>1v8y_A ADP-ribose pyrophosphatase; nudix motif, loop-helix-loop, MUTT family, riken structural genomics/proteomics initiative, RSGI; HET: APR; 1.65A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1v8v_A* 1v8n_A 1v8l_A* 1v8m_A* 1v8i_A 1v8r_A* 1v8s_A* 1v8t_A* 1v8w_A 1v8u_A

Probab=99.82  E-value=9.4e-20  Score=131.68  Aligned_cols=109  Identities=22%  Similarity=0.195  Sum_probs=73.6

Q ss_pred             eeEEEEEEEeccCCcccccccccCceEEEEEEeCC----CCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCee
Q 031268           22 RLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPN----RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLG   97 (162)
Q Consensus        22 r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~----~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~   97 (162)
                      +.+|++++++ +             ++|||+++.+    .+.|.||||++|+|||+++||+||++||||+ +... ..++
T Consensus        34 ~~~v~vii~~-~-------------~~vLL~~~~r~~~~~~~w~lPgG~ve~gEs~~~aa~REl~EEtGl-~~~~-~~l~   97 (170)
T 1v8y_A           34 KPAVAVIALR-E-------------GRMLFVRQMRPAVGLAPLEIPAGLIEPGEDPLEAARRELAEQTGL-SGDL-TYLF   97 (170)
T ss_dssp             CCEEEEEEEE-T-------------TEEEEEECCBTTTTBCCBBCSEEECCTTCCHHHHHHHHHHHHHSE-EEEE-EEEE
T ss_pred             CCeEEEEEEE-C-------------CEEEEEEEEeCCCCCCEEECCccccCCCCCHHHHHHHHHHHHHCC-CcCc-eeeE
Confidence            3578788887 4             3899998753    3569999999999999999999999999999 7655 4566


Q ss_pred             eEEeecccccccCCCCCCceEEEEEEEEeccccc-CCcccccceeEEeeHhHHhhhhcc
Q 031268           98 EWEFRSKSRMNSCNSKEGGCRGYMFALEVTEELE-SWPEQANYKRIWVSNNHFLWRKHS  155 (162)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~-~~~~~~~~~~~W~~~~ea~~~~~~  155 (162)
                      .+......         .....++|.+....... ...+.+..+++|++++++.+++..
T Consensus        98 ~~~~~~~~---------~~~~~~~f~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~  147 (170)
T 1v8y_A           98 SYFVSPGF---------TDEKTHVFLAENLKEVEAHPDEDEAIEVVWMRPEEALERHQR  147 (170)
T ss_dssp             EEESCTTT---------BCCEEEEEEEEEEEECC--------CEEEEECHHHHHHHHHT
T ss_pred             EEecCCCc---------cccEEEEEEEEeccccCCCCCCCceEEEEEEEHHHHHHHHHC
Confidence            55322111         12245666665433211 223344578999999999988543

>2fkb_A Putative nudix hydrolase YFCD; putative protein, MAD, structural genomics, escherichia coli putative nudix hydrolase, PSI; HET: MSE; 2.00A {Escherichia coli K12} SCOP: d.113.1.2

Probab=99.82  E-value=2.2e-19  Score=130.55  Aligned_cols=109  Identities=20%  Similarity=0.166  Sum_probs=76.5

Q ss_pred             ceeEEEEEEEeccCCcccccccccCceEEEEEEeCC-----CCCeee-CCCccCCCCCHHHHHHHHHHHHhCcccccCCC
Q 031268           21 LRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPN-----RDDLVF-PKGGWEDDETVSEAACREALEEAGVRGLLDEN   94 (162)
Q Consensus        21 ~r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~-----~~~W~l-PgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~   94 (162)
                      .+.++++++++.+             ++|||++|..     .+.|.| |||++|+|||+.+||+||++||||+.+... .
T Consensus        36 ~~~~~~v~i~~~~-------------~~vLl~~R~~~~~~~~g~w~l~pGG~ve~gE~~~~aa~REl~EEtGl~~~~~-~  101 (180)
T 2fkb_A           36 RHRATYIVVHDGM-------------GKILVQRRTETKDFLPGMLDATAGGVVQADEQLLESARREAEEELGIAGVPF-A  101 (180)
T ss_dssp             CEEEEEEEEECSS-------------SCEEEEEECSSCSSSTTCEESSBCCBCBTTCCHHHHHHHHHHHHHCCBSCCC-E
T ss_pred             eeeEEEEEEECCC-------------CEEEEEECCCCCccCCCcEEeecCCCCCCCCCHHHHHHHHHHHHHCCCccce-E
Confidence            3455656666543             4799988864     356999 999999999999999999999999987655 4


Q ss_pred             CeeeEEeecccccccCCCCCCceEEEEEEEEecccccCCcccccceeEEeeHhHHhhhh
Q 031268           95 PLGEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWVSNNHFLWRK  153 (162)
Q Consensus        95 ~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~W~~~~ea~~~~  153 (162)
                      .++.+.+.....         ....++|.+..... ......+..+++|++++++.+++
T Consensus       102 ~l~~~~~~~~~~---------~~~~~~f~~~~~~~-~~~~~~E~~~~~W~~~~el~~~~  150 (180)
T 2fkb_A          102 EHGQFYFEDKNC---------RVWGALFSCVSHGP-FALQEDEVSEVCWLTPEEITARC  150 (180)
T ss_dssp             EEEEEEEEETTE---------EEEEEEEEEECCCC-CCCCTTTEEEEEEECHHHHHTTG
T ss_pred             EEEEEEecCCCc---------eEEEEEEEEecCCC-cCCChhHhheEEEecHHHHHHHH
Confidence            667665543211         22456676664332 12233445789999999999874

>3oga_A Nucleoside triphosphatase NUDI; salmonella enterica subsp. enterica serovar typhimurium STR. unknown function; HET: PO4; 1.75A {Salmonella enterica subsp} PDB: 3n77_A

Probab=99.82  E-value=1e-19  Score=130.57  Aligned_cols=104  Identities=16%  Similarity=0.099  Sum_probs=66.2

Q ss_pred             eEEEEEEeCCC-----CCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeee--------EEeecccccccCCCC
Q 031268           47 VLVLMISTPNR-----DDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGE--------WEFRSKSRMNSCNSK  113 (162)
Q Consensus        47 ~~vLLv~r~~~-----~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~--------~~~~~~~~~~~~~~~  113 (162)
                      ++|||++|...     +.|.||||++|+|||+++||+||++||||+.+... ..++.        +.|......      
T Consensus        39 ~~vLL~~r~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~-~~~~~~~~~~~~~~~~~~~~~~------  111 (165)
T 3oga_A           39 GCYLLCKMADNRGVFPGQWALSGGGVEPGERIEEALRREIREELGEQLILS-DITPWTFRDDIRIKTYADGRQE------  111 (165)
T ss_dssp             TEEEEEEECC------CCEECCCEECCTTCCHHHHHHHHHHHHHCSSCCEE-EEEEEEEEEEEEEEEC--CCEE------
T ss_pred             CEEEEEEecCCCCCCCCeEECCccccCCCCCHHHHHHHHHHHHhCCCcccc-ceeeeeeecceeeEecCCCCce------
Confidence            48999988743     67999999999999999999999999999997654 23321        111111000      


Q ss_pred             CCceEEEEEEEEecccccCCcccccceeEEeeHhHHhhh-hccccc
Q 031268          114 EGGCRGYMFALEVTEELESWPEQANYKRIWVSNNHFLWR-KHSNLV  158 (162)
Q Consensus       114 ~~~~~~~~f~~~~~~~~~~~~~~~~~~~~W~~~~ea~~~-~~~~l~  158 (162)
                      ......++|.+........ +..+..+++|++++++.++ +.+..+
T Consensus       112 ~~~~~~~~~~~~~~~~~~~-~~~E~~~~~W~~~~el~~~~~~~~~~  156 (165)
T 3oga_A          112 EIYMIYLIFDCVSANRDIC-INDEFQDYAWVKPEELALYDLNVATR  156 (165)
T ss_dssp             EEEEEEEEEEEEESCCCCC-CCTTEEEEEEECGGGGGGSCBCHHHH
T ss_pred             eEEEEEEEEEeeccCCCcc-CCchheeeEEccHHHHhhCCCCHHHH
Confidence            0011234455544332222 2344578999999999986 444433

>3f13_A Putative nudix hydrolase family member; structural genomics, PSI-2, protein structure initiative; 1.70A {Chromobacterium violaceum}

Probab=99.82  E-value=4.4e-20  Score=133.19  Aligned_cols=85  Identities=20%  Similarity=0.061  Sum_probs=60.5

Q ss_pred             EEEEEEeCCCCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeeeEEeecccccccCCCCCCceEEEEEEEEec
Q 031268           48 LVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMFALEVT  127 (162)
Q Consensus        48 ~vLLv~r~~~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~  127 (162)
                      +|||++++ .+.|.||||++|+|||+.+||+||++||||+.+... ..++.+.+..             ...++|.+...
T Consensus        28 ~vLL~~r~-~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~-~~l~~~~~~~-------------~~~~~f~~~~~   92 (163)
T 3f13_A           28 GVLVTASR-GGRYNLPGGKANRGELRSQALIREIREETGLRINSM-LYLFDHITPF-------------NAHKVYLCIAQ   92 (163)
T ss_dssp             EEEEEECC----BBCSEEECCTTCCHHHHHHHHHHHHHCCCCCEE-EEEEEEECSS-------------EEEEEEEEEC-
T ss_pred             EEEEEEEC-CCeEECCceeCCCCCCHHHHHHHHHHHHHCccccee-EEEEEEecCC-------------eEEEEEEEEEC
Confidence            79999886 578999999999999999999999999999998765 4565554322             24566776654


Q ss_pred             ccccCCcccccceeEEeeHhHH
Q 031268          128 EELESWPEQANYKRIWVSNNHF  149 (162)
Q Consensus       128 ~~~~~~~~~~~~~~~W~~~~ea  149 (162)
                      +..  .+..+..+++||+.+.+
T Consensus        93 ~~~--~~~~E~~~~~W~~~~~~  112 (163)
T 3f13_A           93 GQP--KPQNEIERIALVSSPDT  112 (163)
T ss_dssp             CCC--CCCTTCCEEEEESSTTC
T ss_pred             CcC--ccCCCceEEEEECcccc
Confidence            332  22335678999994443

>3fjy_A Probable MUTT1 protein; dimer, protein structure initiative II), NYSGXRC, 11181H, structural genomics; 2.15A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}

Probab=99.82  E-value=4e-20  Score=148.73  Aligned_cols=130  Identities=22%  Similarity=0.201  Sum_probs=82.4

Q ss_pred             eEEEEEEEeccCC------ccccccc----ccCceEEEEEEeCCCCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccC
Q 031268           23 LVAGCIPYKFEKN------DENKNCK----MEKKVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLD   92 (162)
Q Consensus        23 ~~v~~i~~~~~~~------~~~~~~~----~~~~~~vLLv~r~~~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~   92 (162)
                      .++|+|+|+....      +......    .+++.+|||++++..+.|.||||++|+|||+++||+||++||||+.+...
T Consensus         4 ~aag~i~~r~~~~~~i~~~~~i~~~~~~~i~~~~~~vLLv~r~~~g~W~lPgG~ve~gEs~~~AA~REl~EEtGl~~~~~   83 (364)
T 3fjy_A            4 EAAGGIVWRWKAGSDIANDPAIASSKSAQEQLDSIEVCIVHRPKYDDWSWPKGKLEQNETHRHAAVREIGEETGSPVKLG   83 (364)
T ss_dssp             CEEEEEEEEECTTSHHHHCGGGGGGSCHHHHHTTEEEEEEEETTTTEEECCEEECCTTCCHHHHHHHHHHHHHSCCEEEE
T ss_pred             cccCcEEEEeeccccccCCccccccccccccCCceEEEEEEcCCCCCEECCcCCCCCCCCHHHHHHHHHHHHhCCeeeec
Confidence            4789999985421      0000000    03468999999988888999999999999999999999999999998766


Q ss_pred             CCCeeeEEeeccccccc----CCCCCCceEEEEEEEEecccc----------c--CCcccccceeEEeeHhHHhhhh
Q 031268           93 ENPLGEWEFRSKSRMNS----CNSKEGGCRGYMFALEVTEEL----------E--SWPEQANYKRIWVSNNHFLWRK  153 (162)
Q Consensus        93 ~~~l~~~~~~~~~~~~~----~~~~~~~~~~~~f~~~~~~~~----------~--~~~~~~~~~~~W~~~~ea~~~~  153 (162)
                       ..++.+.|........    .++......+++|.+......          .  ...+++..+++|++++++.+++
T Consensus        84 -~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~  159 (364)
T 3fjy_A           84 -PYLCEVEYPLSEEGKKTRHSHDCTADTKHTLYWMAQPISADDAEHLLDAFGPVHRADVGEINDIVWVSVREARKIL  159 (364)
T ss_dssp             -EEEEEEC---------------------CEEEEEEEECCHHHHHTTHHHHCCCCCCCTTTCCEEEEEEHHHHHHHC
T ss_pred             -cccceEEEeccCCCcccccccccccCceEEEEEEEEecCCccccccccccCccccCCccceeeeecCcHHHHHHHh
Confidence             4666555443211000    000011235667777655431          0  1223456899999999999874

>3o6z_A GDP-mannose pyrophosphatase NUDK; nudix, hydrolase, biofilm; 2.05A {Escherichia coli} SCOP: d.113.1.1 PDB: 3o52_A* 1viu_A 3o69_A 3o61_A

Probab=99.81  E-value=8.8e-20  Score=134.65  Aligned_cols=112  Identities=15%  Similarity=0.017  Sum_probs=76.4

Q ss_pred             eeEEEEEEEeccCCcccccccccCceEEEEEEeC----------CCCCeeeCCCccCCCCCHHHHHHHHHHHHhCccccc
Q 031268           22 RLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTP----------NRDDLVFPKGGWEDDETVSEAACREALEEAGVRGLL   91 (162)
Q Consensus        22 r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~----------~~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~   91 (162)
                      ..+|+++++..+            +++|||+++.          ..+.|+||||++| |||+++||+||++||||+.+..
T Consensus        45 ~~av~v~~~~~~------------~~~vlLv~~~r~~~~~~~~~~~~~w~lPgG~ve-gE~~~~aa~REl~EEtG~~~~~  111 (191)
T 3o6z_A           45 GNGATILLYNTK------------KKTVVLIRQFRVATWVNGNESGQLIESCAGLLD-NDEPEVCIRKEAIEETGYEVGE  111 (191)
T ss_dssp             CCEEEEEEEETT------------TTEEEEEEEECHHHHTTTCTTCEEEECEEEECC-SSCHHHHHHHHHHHHC-CCCSC
T ss_pred             CCEEEEEEEECC------------CCEEEEEEcCCccccccCCCCCeEEEecceEeC-CCCHHHHHHHHHHHHhCCccCc
Confidence            346777777754            2589999875          3455999999999 9999999999999999999765


Q ss_pred             CCCCeeeEEeecccccccCCCCCCceEEEEEEEEeccccc----CCcccccceeEEeeHhHHhhhhccc
Q 031268           92 DENPLGEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEELE----SWPEQANYKRIWVSNNHFLWRKHSN  156 (162)
Q Consensus        92 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~----~~~~~~~~~~~W~~~~ea~~~~~~~  156 (162)
                      . ..++.+......         .....++|.+.......    ...+.+..+++|++++++.+++.++
T Consensus       112 ~-~~l~~~~~~~~~---------~~~~~~~f~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~g  170 (191)
T 3o6z_A          112 V-RKLFELYMSPGG---------VTELIHFFIAEYSDNQRANAGGGVEDEAIEVLELPFSQALEMIKTG  170 (191)
T ss_dssp             E-EEEEEEESCTTT---------BCCEEEEEEEECCTTCC--------CCSSEEEEEEHHHHHHHHHHS
T ss_pred             E-EEEEEEEeCCCc---------cCcEEEEEEEEEcccccccCCCCCCCcEEEEEEEEHHHHHHHHHcC
Confidence            5 456654322211         12356777776543211    1114456799999999999986543

>1nqz_A COA pyrophosphatase (MUTT/nudix family protein); D.radiodurans, hydrolase; 1.70A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1nqy_A

Probab=99.81  E-value=9.5e-20  Score=134.26  Aligned_cols=113  Identities=20%  Similarity=0.139  Sum_probs=79.6

Q ss_pred             CceeEEEEEEEeccCCcccccccccCceEEEEEEeCC-----CCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCC
Q 031268           20 QLRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPN-----RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDEN   94 (162)
Q Consensus        20 ~~r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~-----~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~   94 (162)
                      +.+..+++|+++.++           +.+|||++|..     .+.|.||||++|+|||+++||+||++||||+.+... .
T Consensus        32 ~~~~~~~~v~i~~~~-----------~~~vLL~~r~~~~~~~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~-~   99 (194)
T 1nqz_A           32 HYRRAAVLVALTREA-----------DPRVLLTVRSSELPTHKGQIAFPGGSLDAGETPTQAALREAQEEVALDPAAV-T   99 (194)
T ss_dssp             -CEEEEEEEEEESSS-----------SCBBCEEEEC------CCCEECSEEECCTTCCHHHHHHHHHHHHHCCCGGGC-E
T ss_pred             CCceEEEEEEEecCC-----------CeEEEEEEecCCCCCCCCeEECCcccCCCCCCHHHHHHHHHHHHHCCCccce-E
Confidence            456777777774332           34899999864     467999999999999999999999999999998766 4


Q ss_pred             CeeeEEeecccccccCCCCCCceEEEEEEEEecccc--cCCcccccceeEEeeHhHH-hhhh
Q 031268           95 PLGEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEEL--ESWPEQANYKRIWVSNNHF-LWRK  153 (162)
Q Consensus        95 ~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~--~~~~~~~~~~~~W~~~~ea-~~~~  153 (162)
                      .++.+.+.....         ...+++|.+......  ....+.+..+++|++++++ .+..
T Consensus       100 ~l~~~~~~~~~~---------~~~~~~f~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~  152 (194)
T 1nqz_A          100 LLGELDDVFTPV---------GFHVTPVLGRIAPEALDTLRVTPEVAQIITPTLAELRAVPL  152 (194)
T ss_dssp             EEEECCCEEETT---------TEEEEEEEEEECGGGGGGCCCCTTEEEEECCBHHHHHHSCC
T ss_pred             EEEEccCccCCC---------CeEEEEEEEEecCCccccCCCccceeEEEEEEHHHhccCCC
Confidence            666654333211         135667777665322  2233445578999999999 7653

>3q91_A Uridine diphosphate glucose pyrophosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 2.70A {Homo sapiens}

Probab=99.81  E-value=1.1e-19  Score=136.97  Aligned_cols=115  Identities=15%  Similarity=0.083  Sum_probs=78.1

Q ss_pred             CceeEEEEEEEeccCCcccccccccCceEEEEEEeCC-----------------------------------CCCeeeCC
Q 031268           20 QLRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPN-----------------------------------RDDLVFPK   64 (162)
Q Consensus        20 ~~r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~-----------------------------------~~~W~lPg   64 (162)
                      ..+.+|++++++.+            .++|||+++.+                                   ...|+|||
T Consensus        34 ~~~~aV~vl~~~~~------------~~~vlLvrQ~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~welPg  101 (218)
T 3q91_A           34 KTHDSVTVLLFNSS------------RRSLVLVKQFRPAVYAGEVERRFPGSLAAVDQDGPRELQPALPGSAGVTVELCA  101 (218)
T ss_dssp             -CCCEEEEEEEEGG------------GTEEEEEEEECHHHHHHHTC-------------------------CCEEEECEE
T ss_pred             EcCCeEEEEEEECC------------CCEEEEEEccccccccccccccccccccccccccccccccccccCCCeEEECCc
Confidence            33568888888854            24899998742                                   34699999


Q ss_pred             CccCC-CCCHHHHHHHHHHHHhCccc--ccCCCCeeeEEeecccccccCCCCCCceEEEEEEEEecccc------cCCcc
Q 031268           65 GGWED-DETVSEAACREALEEAGVRG--LLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEEL------ESWPE  135 (162)
Q Consensus        65 G~ve~-gEt~~eaa~REl~EEtGl~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~------~~~~~  135 (162)
                      |++|+ |||+++||+||++||||+.+  ... ..++.+......         .....++|.+.+....      ....+
T Consensus       102 G~ve~~gEs~~eaA~REl~EEtGl~~~~~~l-~~l~~~~~~~g~---------~~~~~~~f~a~~~~~~~~~~~~~~~d~  171 (218)
T 3q91_A          102 GLVDQPGLSLEEVACKEAWEECGYHLAPSDL-RRVATYWSGVGL---------TGSRQTMFYTEVTDAQRSGPGGGLVEE  171 (218)
T ss_dssp             EECCSSSCCHHHHHHHHHHHHHCBCCCGGGC-EEEEEEEEC------------CCEEEEEEEEEECGGGBCC--------
T ss_pred             ceeCCCCCCHHHHHHHHHHHHhCCccccCce-EEEEEEecCCCc---------cceEEEEEEEEECCcccccCCCCCCCC
Confidence            99999 99999999999999999997  444 355554322211         1235677777755321      12234


Q ss_pred             cccceeEEeeHhHHhhhhccc
Q 031268          136 QANYKRIWVSNNHFLWRKHSN  156 (162)
Q Consensus       136 ~~~~~~~W~~~~ea~~~~~~~  156 (162)
                      .+..++.|++++++.+++.++
T Consensus       172 ~E~~ev~wv~l~el~~~i~~g  192 (218)
T 3q91_A          172 GELIEVVHLPLEGAQAFADDP  192 (218)
T ss_dssp             -CCEEEEEEEGGGHHHHHHCT
T ss_pred             CcEEEEEEEEHHHHHHHHHcC
Confidence            456889999999999986544

>1vhz_A ADP compounds hydrolase NUDE; structural genomics; HET: APR; 2.32A {Escherichia coli} SCOP: d.113.1.1 PDB: 1vhg_A*

Probab=99.81  E-value=1.5e-19  Score=134.26  Aligned_cols=99  Identities=18%  Similarity=0.077  Sum_probs=70.1

Q ss_pred             EEEEEEeCCC----CCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeeeEEeecccccccCCCCCCceEEEEEE
Q 031268           48 LVLMISTPNR----DDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMFA  123 (162)
Q Consensus        48 ~vLLv~r~~~----~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~  123 (162)
                      +|||+++.+.    +.|+||||++|+|||+++||+||++||||+.+... ..++.+.......         ....++|.
T Consensus        61 ~vLLvrq~r~~~~~~~welPgG~ve~gEs~~~aA~REl~EEtGl~~~~~-~~l~~~~~~~~~~---------~~~~~~f~  130 (198)
T 1vhz_A           61 HLILIREYAVGTESYELGFSKGLIDPGESVYEAANRELKEEVGFGANDL-TFLKKLSMAPSYF---------SSKMNIVV  130 (198)
T ss_dssp             EEEEEEEEETTTTEEEEECEEEECCTTCCHHHHHHHHHHHHHSEEEEEE-EEEEEEECCTTTC---------CCEEEEEE
T ss_pred             EEEEEEcccCCCCCcEEEeCcccCCCCcCHHHHHHHHHHHHHCCCcCce-EEEEEEeCCCCcc---------CcEEEEEE
Confidence            8999987532    35999999999999999999999999999998765 4666665322111         12456666


Q ss_pred             EEeccccc-CCcccccceeEEeeHhHHhhhhccc
Q 031268          124 LEVTEELE-SWPEQANYKRIWVSNNHFLWRKHSN  156 (162)
Q Consensus       124 ~~~~~~~~-~~~~~~~~~~~W~~~~ea~~~~~~~  156 (162)
                      +....... ...+.+..++.|++++++.+++..+
T Consensus       131 a~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~~  164 (198)
T 1vhz_A          131 AQDLYPESLEGDEPEPLPQVRWPLAHMMDLLEDP  164 (198)
T ss_dssp             EEEEEECCCCCCCSSCCCEEEEEGGGGGGGGGCT
T ss_pred             EEeCCcccCCCCCCceEEEEEEEHHHHHHHHHcC
Confidence            65432211 2223445788999999999986543

>1f3y_A Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase; enzyme,mixed 4-stranded beta sheet, 2-stranded antiparallel sheet; NMR {Lupinus angustifolius} SCOP: d.113.1.1 PDB: 1jkn_A*

Probab=99.81  E-value=5.1e-20  Score=131.47  Aligned_cols=124  Identities=20%  Similarity=0.218  Sum_probs=78.8

Q ss_pred             ccCceeEEEEEEEeccCCcccccccccCceEEEEEEeCC-CCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCC-
Q 031268           18 EDQLRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPN-RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENP-   95 (162)
Q Consensus        18 ~~~~r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~-~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~-   95 (162)
                      .+.+|.+|++++++.+             ++|||++|.. .+.|.||||++|+|||+++||+||++||||+.+...... 
T Consensus        10 ~~~~~~~v~~~i~~~~-------------~~vLl~~r~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~   76 (165)
T 1f3y_A           10 PEGYRRNVGICLMNND-------------KKIFAASRLDIPDAWQMPQGGIDEGEDPRNAAIRELREETGVTSAEVIAEV   76 (165)
T ss_dssp             CSSCCCEEEEEEECTT-------------SCEEEEEETTEEEEEECCEEECCTTCCHHHHHHHHHHHHHCCCSEEEEEEC
T ss_pred             ccceeeeEEEEEECCC-------------CcEEEEecCCCCCcEECCeeccCCCCCHHHHHHHHHHHhhCCChhhhhccc
Confidence            3567889999888654             4899999875 367999999999999999999999999999986421000 


Q ss_pred             --eeeEEeecccc----cccCCCCCCceEEEEEEEEeccccc--CC-----cccccceeEEeeHhHHhhhhcc
Q 031268           96 --LGEWEFRSKSR----MNSCNSKEGGCRGYMFALEVTEELE--SW-----PEQANYKRIWVSNNHFLWRKHS  155 (162)
Q Consensus        96 --l~~~~~~~~~~----~~~~~~~~~~~~~~~f~~~~~~~~~--~~-----~~~~~~~~~W~~~~ea~~~~~~  155 (162)
                        ...+.+.....    .... ........++|.+.+.....  ..     ++.+..+++|++++++.+++.+
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~  148 (165)
T 1f3y_A           77 PYWLTYDFPPKVREKLNIQWG-SDWKGQAQKWFLFKFTGQDQEINLLGDGSEKPEFGEWSWVTPEQLIDLTVE  148 (165)
T ss_dssp             SSCCBCCCCHHHHHHHGGGSC-SSCCSCBEEEEEEEECSCGGGCCCCCCSSSCCSEEEEEEECHHHHHHHBCG
T ss_pred             ccceeeecCcccccccccccc-ccccCceEEEEEEEecCCcccccccCCCCCCChhheeEEecHHHHHHHhhh
Confidence              01122211100    0000 00001134566666543211  11     2345679999999999997644

>2rrk_A ORF135, CTP pyrophosphohydrolase; NMR {Escherichia coli}

Probab=99.81  E-value=3.5e-19  Score=123.97  Aligned_cols=94  Identities=18%  Similarity=0.182  Sum_probs=68.7

Q ss_pred             eEEEEEEeCC----CCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeeeEEeecccccccCCCCCCceEEEEE
Q 031268           47 VLVLMISTPN----RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMF  122 (162)
Q Consensus        47 ~~vLLv~r~~----~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f  122 (162)
                      ++|||++|..    .+.|.||||++++|||+++||+||++||||+.+... ..++.+.+.....         ....++|
T Consensus        20 ~~vLl~~r~~~~~~~g~w~lPgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~-~~~~~~~~~~~~~---------~~~~~~~   89 (140)
T 2rrk_A           20 GKILLAQRPAQSDQAGLWEFAGGKVEPDESQRQALVRELREELGIEATVG-EYVASHQREVSGR---------IIHLHAW   89 (140)
T ss_dssp             TEEEEEECCSSCSCCCCEECCEEECCTTSCHHHHHHHHHHHHSCEEEECC-EEEEEEEEEETTE---------EEEEEEE
T ss_pred             CEEEEEEcCCCCCCCCEEECCceecCCCCCHHHHHHHHHHHHHCCeeecc-cEEEEEEEecCCc---------EEEEEEE
Confidence            4899999864    367999999999999999999999999999998765 4667665443221         1245666


Q ss_pred             EEEecccccCCcccccceeEEeeHhHHhhh
Q 031268          123 ALEVTEELESWPEQANYKRIWVSNNHFLWR  152 (162)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~W~~~~ea~~~  152 (162)
                      .+......  ....+..+++|++++++.++
T Consensus        90 ~~~~~~~~--~~~~e~~~~~W~~~~el~~~  117 (140)
T 2rrk_A           90 HVPDFHGT--LQAHEHQALVWCSPEEALQY  117 (140)
T ss_dssp             EESEEEEC--CCCSSCSCEEEECHHHHTTS
T ss_pred             EEEeeCCC--cCCCccceeEEeCHHHHhhC
Confidence            66443321  12233468899999999886

>2fml_A MUTT/nudix family protein; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; 2.26A {Enterococcus faecalis} SCOP: a.4.5.68 d.113.1.6

Probab=99.81  E-value=2.8e-19  Score=138.86  Aligned_cols=119  Identities=17%  Similarity=0.216  Sum_probs=81.5

Q ss_pred             cCceeEEEEEEEeccCCcccccccccCceEEEEEEeCC---CCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCC-C
Q 031268           19 DQLRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPN---RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDE-N   94 (162)
Q Consensus        19 ~~~r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~---~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~-~   94 (162)
                      ..+.++|++|+++.+++        .+.++|||++|..   .+.|.||||++|+|||+++||+||++||||+.+.... .
T Consensus        36 ~~p~v~v~~vv~~~~~~--------~~~~~VLLv~R~~~p~~g~W~lPGG~ve~gEs~~~AA~REl~EEtGl~v~~~~l~  107 (273)
T 2fml_A           36 EKPSLTVDMVLLCYNKE--------ADQLKVLLIQRKGHPFRNSWALPGGFVNRNESTEDSVLRETKEETGVVISQENIE  107 (273)
T ss_dssp             CCCEEEEEEEEEEEETT--------TTEEEEEEEEECSSSSTTCEECCEEECCTTSCHHHHHHHHHHHHHCCCCCGGGEE
T ss_pred             CCCceEEEEEEEEEcCC--------CCCcEEEEEEccCCCCCCcEECCccCCCCCcCHHHHHHHHHHHHHCCCCCcCcEE
Confidence            34578999999986531        0157999999875   3679999999999999999999999999998754320 2


Q ss_pred             CeeeEEeecccccccCCCCCCceEEEEEEEEecccccCCcccccceeEEeeHhHHhhhh
Q 031268           95 PLGEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWVSNNHFLWRK  153 (162)
Q Consensus        95 ~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~W~~~~ea~~~~  153 (162)
                      .++.|......       .......++|.+.+.... ..+..+..+++|++++++.+.+
T Consensus       108 ~l~~~~~~~r~-------~~~~~~~~~y~a~~~~~~-~~~~~E~~~~~W~~~~e~~~~~  158 (273)
T 2fml_A          108 QLHSFSRPDRD-------PRGWVVTVSYLAFIGEEP-LIAGDDAKEVHWFNLERHGQHI  158 (273)
T ss_dssp             EEEEECCTTSS-------TTSSEEEEEEEEECCCCC-CCCCTTEEEEEEEEEEEETTEE
T ss_pred             EEEEEcCCCCC-------CCceEEEEEEEEEeCCCC-CCCCcceeeEEEEEhhHhhhhh
Confidence            34444322211       112335566766655432 2344455789999999876653

>2b06_A MUTT/nudix family protein; structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 1.40A {Streptococcus pneumoniae} SCOP: d.113.1.1

Probab=99.80  E-value=7.3e-19  Score=124.70  Aligned_cols=119  Identities=18%  Similarity=0.219  Sum_probs=77.8

Q ss_pred             CceeEEEEEEEeccCCcccccccccCceEEEEEEeCCCC--CeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCee
Q 031268           20 QLRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNRD--DLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLG   97 (162)
Q Consensus        20 ~~r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~~~--~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~   97 (162)
                      ..+.++++|+++.+.          ++..|||++|...+  .|.||||++++|||+.+||+||++||||+.+... ..++
T Consensus         6 ~~~~~~~~ii~~~~~----------~~~~vLl~~r~~~~~~gw~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~-~~~~   74 (155)
T 2b06_A            6 LTILTNICLIEDLET----------QRVVMQYRAPENNRWSGYAFPGGHVENDEAFAESVIREIYEETGLTIQNP-QLVG   74 (155)
T ss_dssp             CEEEEEEEEEEETTT----------TEEEEEEEC-----CCEEECCCCBCCTTSCHHHHHHHHHHHHHSEEEESC-EEEE
T ss_pred             CcEEEEEEEEEECCC----------CeEEEEEEECCCCCCCCEeccceecCCCCCHHHHHHHHHHHHhCccccCC-cEEE
Confidence            346778888877432          23448887775432  2799999999999999999999999999998766 4666


Q ss_pred             eEEeecccccccCCCCCCceEEEEEEEEecccccCCcccccceeEEeeHhHHhhh-hcccccc
Q 031268           98 EWEFRSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWVSNNHFLWR-KHSNLVG  159 (162)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~W~~~~ea~~~-~~~~l~~  159 (162)
                      .+.+....        ......++|.+......  ....+..+++|++++++.++ +.+.++.
T Consensus        75 ~~~~~~~~--------~~~~~~~~~~~~~~~~~--~~~~e~~~~~W~~~~el~~~~~~~~~~~  127 (155)
T 2b06_A           75 IKNWPLDT--------GGRYIVICYKATEFSGT--LQSSEEGEVSWVQKDQIPNLNLAYDMLP  127 (155)
T ss_dssp             EEEEECTT--------SCEEEEEEEEECEEEEC--CCCBTTBEEEEEEGGGGGGSCBCTTHHH
T ss_pred             EEeeccCC--------CceEEEEEEEEEecCCC--CCCCcceeeEEeeHHHhhhCCCChhHHH
Confidence            66554321        11234566666443221  11234578999999999986 3344443

>1hzt_A Isopentenyl diphosphate delta-isomerase; dimethylallyl, isoprenoids; 1.45A {Escherichia coli} SCOP: d.113.1.2 PDB: 1hx3_A 1r67_A 1x84_A* 1x83_A* 1ppv_A* 1nfz_A* 1nfs_A* 1ppw_A* 1pvf_A 2veh_A* 2vej_A 2vnp_A* 2vnq_A 2g74_A 2g73_A* 2b2k_A 1i9a_A 1q54_A* 1ow2_A* 3hyq_A*

Probab=99.80  E-value=1.1e-19  Score=133.63  Aligned_cols=116  Identities=16%  Similarity=0.092  Sum_probs=77.4

Q ss_pred             ceeEEEEEEEeccCCcccccccccCceEEEEEEeCC-----CCCeee-CCCccCCCCCHHHHHHHHHHHHhCcccccCCC
Q 031268           21 LRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPN-----RDDLVF-PKGGWEDDETVSEAACREALEEAGVRGLLDEN   94 (162)
Q Consensus        21 ~r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~-----~~~W~l-PgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~   94 (162)
                      .+.+|++++++.+             ++|||++|..     .+.|.| |||++|+|||+++||+||++||||+.+.....
T Consensus        31 ~~~~v~~~i~~~~-------------g~vLl~~R~~~~~~~~g~w~~~PgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~   97 (190)
T 1hzt_A           31 LHLAFSSWLFNAK-------------GQLLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAVIRRCRYELGVEITPPES   97 (190)
T ss_dssp             CEECEEEEEECTT-------------CCEEEEEECTTCSSSTTCEEESEEECCCTTCCHHHHHHHHHHHHHCCCBSCCEE
T ss_pred             eEEEEEEEEEcCC-------------CEEEEEEeCCCCCCCCCcccCcccccCCCCCCHHHHHHHHHHHHHCCCchhhhe
Confidence            3456777777643             4899999854     367999 99999999999999999999999998764312


Q ss_pred             CeeeEEeecccccccCCCCCCceEEEEEEEEecccccCCcccccceeEEeeHhHHhhhhc
Q 031268           95 PLGEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWVSNNHFLWRKH  154 (162)
Q Consensus        95 ~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~W~~~~ea~~~~~  154 (162)
                      .++.+.+.......    .......++|.+...+.. ...+.+..+++|++++++.+++.
T Consensus        98 ~~~~~~~~~~~~~~----~~~~~~~~~f~~~~~~~~-~~~~~E~~~~~W~~~~el~~~~~  152 (190)
T 1hzt_A           98 IYPDFRYRATDPSG----IVENEVCPVFAARTTSAL-QINDDEVMDYQWCDLADVLHGID  152 (190)
T ss_dssp             EETTCEEEEECTTS----CEEEEECCEEEEEBCSCC-CCCTTTEEEEEEECHHHHHHHHH
T ss_pred             eeeeEEEEeeCCCC----CcceEEEEEEEEecCCCC-cCCccceeeEEEecHHHHHHHHH
Confidence            34444433211100    001223466777655422 22334557899999999998754

>1q27_A Putative nudix hydrolase DR0079; radiation resistance; NMR {Deinococcus radiodurans} SCOP: d.113.1.2 PDB: 2o5f_A

Probab=99.80  E-value=2.3e-19  Score=129.44  Aligned_cols=108  Identities=19%  Similarity=0.169  Sum_probs=75.0

Q ss_pred             eeEEEEEEEeccCCcccccccccCceEEEEEEeCC-----CCCee-eCCCccCCCCCHHHHHHHHHHHHhCcccccCC-C
Q 031268           22 RLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPN-----RDDLV-FPKGGWEDDETVSEAACREALEEAGVRGLLDE-N   94 (162)
Q Consensus        22 r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~-----~~~W~-lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~-~   94 (162)
                      +.++++++++.+             ++|||++|..     .+.|. ||||++++|||+.+||+||++||||+.+.... .
T Consensus        34 ~~~v~v~i~~~~-------------~~vLl~~r~~~~~~~~g~w~~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~l~  100 (171)
T 1q27_A           34 VRVVNAFLRNSQ-------------GQLWIPRRSPSKSLFPNALDVSVGGAVQSGETYEEAFRREAREELNVEIDALSWR  100 (171)
T ss_dssp             CEEEEEEEEETT-------------TEEEECCSCCSSSCCCCSCCCSEEEECSSSSCHHHHHHHHHHHHHSCTTSSSCEE
T ss_pred             ceEEEEEEECCC-------------CeEEEEEecCCCCCCCCccccccCccccCCCCHHHHHHHHHHHHHCCcccccceE
Confidence            667777777654             3899998753     36698 99999999999999999999999999976541 2


Q ss_pred             CeeeEE-eecccccccCCCCCCceEEEEEEEEecccccCCcccccceeEEeeHhHHhhhh
Q 031268           95 PLGEWE-FRSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWVSNNHFLWRK  153 (162)
Q Consensus        95 ~l~~~~-~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~W~~~~ea~~~~  153 (162)
                      .++.+. +....          ....++|.+..... ......+..+++|++++++.++.
T Consensus       101 ~~~~~~~~~~~~----------~~~~~~f~~~~~~~-~~~~~~E~~~~~W~~~~el~~~~  149 (171)
T 1q27_A          101 PLASFSPFQTTL----------SSFMCVYELRSDAT-PIFNPNDISGGEWLTPEHLLARI  149 (171)
T ss_dssp             EEEEECSSSSCC----------SSEEEEEEEECCCC-CCSCTTTCSCCEEECHHHHHHHH
T ss_pred             EEEEEeccCCCC----------ccEEEEEEEEECCc-cccCchhhheEEEecHHHHHHHH
Confidence            333332 22211          11567777766322 22223445789999999999763

>1g0s_A Hypothetical 23.7 kDa protein in ICC-TOLC intergenic region; nudix fold, hydrolase; 1.90A {Escherichia coli} SCOP: d.113.1.1 PDB: 1g9q_A* 1ga7_A 1khz_A* 1viq_A

Probab=99.80  E-value=2.5e-19  Score=134.06  Aligned_cols=111  Identities=23%  Similarity=0.159  Sum_probs=75.3

Q ss_pred             eEEEEEEEeccCCcccccccccCceEEEEEEeCC---------CCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCC
Q 031268           23 LVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPN---------RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDE   93 (162)
Q Consensus        23 ~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~---------~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~   93 (162)
                      .+|++++++.+            +++|||+++.+         .+.|+||||++|+|||+++||+||++||||+.+... 
T Consensus        58 ~av~vl~~~~~------------~~~vLLvrq~R~~~~~~~~~~~~welPgG~ve~gE~~~~aA~REl~EEtGl~~~~~-  124 (209)
T 1g0s_A           58 HAAVLLPFDPV------------RDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIVKRT-  124 (209)
T ss_dssp             CEEEEEEEETT------------TTEEEEEEEECGGGGGGSSCSEEEECEEEECCTTCCHHHHHHHHHHHHHCCCCCCE-
T ss_pred             CEEEEEEEECC------------CCEEEEEEeecccCCCCCCCCeEEEeCcccCCCCcCHHHHHHHHHHHHcCcccCcE-
Confidence            47777777743            24899998643         234999999999999999999999999999998655 


Q ss_pred             CCeeeEEeecccccccCCCCCCceEEEEEEEEecccc--c---CCcccccceeEEeeHhHHhhhhcc
Q 031268           94 NPLGEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEEL--E---SWPEQANYKRIWVSNNHFLWRKHS  155 (162)
Q Consensus        94 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~--~---~~~~~~~~~~~W~~~~ea~~~~~~  155 (162)
                      ..++.+. .....        .....++|.+......  .   ...+.+..++.|++++++.+++.+
T Consensus       125 ~~l~~~~-~~~g~--------~~~~~~~f~a~~~~~~~~~~~~~~~e~E~~~~~w~~~~el~~~i~~  182 (209)
T 1g0s_A          125 KPVLSFL-ASPGG--------TSERSSIMVGEVDATTASGIHGLADENEDIRVHVVSREQAYQWVEE  182 (209)
T ss_dssp             EEEEEEE-SCTTT--------BCCEEEEEEEECCGGGCC--------CCSCEEEEEEHHHHHHHHHT
T ss_pred             EEeEEEe-cCCCc--------cCcEEEEEEEEEccccccCCCCCCCCCcEEEEEEEEHHHHHHHHHc
Confidence            4566552 22111        1125677777653211  1   123334568999999999998654

>1mut_A MUTT, nucleoside triphosphate pyrophosphohydrolase; DNA repair; NMR {Escherichia coli} SCOP: d.113.1.1 PDB: 1ppx_A* 1pun_A* 1puq_A* 1pus_A* 1tum_A* 3a6s_A* 3a6t_A* 3a6u_A* 3a6v_A*

Probab=99.80  E-value=3.5e-20  Score=127.31  Aligned_cols=94  Identities=19%  Similarity=0.172  Sum_probs=67.6

Q ss_pred             eEEEEEEeCCC----CCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeeeEEeecccccccCCCCCCceEEEEE
Q 031268           47 VLVLMISTPNR----DDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMF  122 (162)
Q Consensus        47 ~~vLLv~r~~~----~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f  122 (162)
                      ++|||++|...    +.|.||||++++|||+.+||+||++||||+.+... ..++.+.+....         .....++|
T Consensus        16 ~~vLl~~r~~~~~~~g~w~~PgG~~e~gE~~~~aa~RE~~EE~G~~~~~~-~~~~~~~~~~~~---------~~~~~~~~   85 (129)
T 1mut_A           16 NEIFITRRAADAHMANKLEFPGGKIEMGETPEQAVVRELQEEVGITPQHF-SLFEKLEYEFPD---------RHITLWFW   85 (129)
T ss_dssp             TEEEEEECSSCCSSSCCEECCCCCSSSCSSTTHHHHHHHHTTTCCSSCEE-CCCCCCBCCCSS---------CEEECCCE
T ss_pred             CEEEEEEeCCCCCCCCeEECCccCcCCCCCHHHHHHHHHHHHhCCccccc-eEEEEEEEecCC---------ceEEEEEE
Confidence            48999998754    67999999999999999999999999999997655 355554432221         11234566


Q ss_pred             EEEecccccCCcccccceeEEeeHhHHhhh
Q 031268          123 ALEVTEELESWPEQANYKRIWVSNNHFLWR  152 (162)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~W~~~~ea~~~  152 (162)
                      .+.......  ...+..+++|++++++.++
T Consensus        86 ~~~~~~~~~--~~~e~~~~~W~~~~el~~~  113 (129)
T 1mut_A           86 LVERWEGEP--WGKEGQPGEWMSLVGLNAD  113 (129)
T ss_dssp             EEEECSSCC--CCCSSCCCEEEESSSCCTT
T ss_pred             EEEccCCcc--CCcccceeEEeCHHHcccc
Confidence            666543221  2233467899999999886

>1mk1_A ADPR pyrophosphatase; nudix hydrolase, adprase, adenosine DI ribose, RV1700, hydrolase; HET: APR; 2.00A {Mycobacterium tuberculosis} SCOP: d.113.1.1 PDB: 1mp2_A 1mqe_A* 1mqw_A* 1mr2_A*

Probab=99.79  E-value=1.6e-19  Score=134.81  Aligned_cols=110  Identities=15%  Similarity=0.061  Sum_probs=72.3

Q ss_pred             eEEEEEEEeccCCcccccccccCceEEEEEEeCC----CCCeeeCCCccC-CCCCHHHHHHHHHHHHhCcccccCCCCee
Q 031268           23 LVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPN----RDDLVFPKGGWE-DDETVSEAACREALEEAGVRGLLDENPLG   97 (162)
Q Consensus        23 ~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~----~~~W~lPgG~ve-~gEt~~eaa~REl~EEtGl~~~~~~~~l~   97 (162)
                      .+|++++++.+             ++|||+++.+    .+.|+||||++| +|||+++||+||++||||+.+... ..++
T Consensus        44 ~av~v~i~~~~-------------~~vLLvrr~r~~~~~~~w~lPgG~ve~~gEs~~~aa~REl~EEtGl~~~~~-~~l~  109 (207)
T 1mk1_A           44 GAVAIVAMDDN-------------GNIPMVYQYRHTYGRRLWELPAGLLDVAGEPPHLTAARELREEVGLQASTW-QVLV  109 (207)
T ss_dssp             CEEEEEECCTT-------------SEEEEEEEEETTTTEEEEECCEEECCSTTCCHHHHHHHHHHHHHCEEEEEE-EEEE
T ss_pred             CEEEEEEEcCC-------------CEEEEEEeecCCCCCcEEEeCCccccCCCCCHHHHHHHHHHHHHCCccccc-EEEE
Confidence            46666667543             4899998753    246999999999 999999999999999999998765 4555


Q ss_pred             eEEeecccccccCCCCCCceEEEEEEEEecccccC---CcccccceeEEeeHhHHhhhhcc
Q 031268           98 EWEFRSKSRMNSCNSKEGGCRGYMFALEVTEELES---WPEQANYKRIWVSNNHFLWRKHS  155 (162)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~---~~~~~~~~~~W~~~~ea~~~~~~  155 (162)
                      .+ +.....        .....++|.+........   ..+.+..+++|++++++.+++..
T Consensus       110 ~~-~~~~~~--------~~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~  161 (207)
T 1mk1_A          110 DL-DTAPGF--------SDESVRVYLATGLREVGRPEAHHEEADMTMGWYPIAEAARRVLR  161 (207)
T ss_dssp             EE-CSCTTT--------BCCCEEEEEEEEEEECCC----------CEEEEEHHHHHHHHHT
T ss_pred             EE-EcCCCc--------cccEEEEEEEEccccCCCCCCCCCCceEEEEEEEHHHHHHHHHc
Confidence            54 222111        111355666654332211   22344578999999999998543

>2dsc_A ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP-ribose pyrophosphatase, NUDT5, hydrolase; HET: APR; 2.00A {Homo sapiens} PDB: 2dsd_A* 3bm4_A* 2dsb_A 3aca_A* 3ac9_A* 3l85_A*

Probab=99.78  E-value=5.9e-19  Score=132.12  Aligned_cols=113  Identities=19%  Similarity=0.150  Sum_probs=74.1

Q ss_pred             eEEEEEEEeccCCcccccccccCceEEEEEEeCC----CCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeee
Q 031268           23 LVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPN----RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGE   98 (162)
Q Consensus        23 ~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~----~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~   98 (162)
                      .+|+++++..+++         ++++|||+++.+    .+.|+||||++|+|||+++||+||++||||+.+... ..++.
T Consensus        62 ~av~v~~v~~~~~---------~~~~vlLv~q~R~~~~~~~welPgG~ve~gEs~~~aA~REl~EEtGl~~~~~-~~l~~  131 (212)
T 2dsc_A           62 DGVAVIPVLQRTL---------HYECIVLVKQFRPPMGGYCIEFPAGLIDDGETPEAAALRELEEETGYKGDIA-ECSPA  131 (212)
T ss_dssp             SEEEEEEEEECTT---------SCCEEEEEEEEEGGGTEEEEECCEEECCTTCCHHHHHHHHHHHHHCCCCEEE-EECCC
T ss_pred             CEEEEEEEEeCCC---------CCcEEEEEEeecCCCCCcEEECCccccCCCCCHHHHHHHHHHHHhCCCccce-EEecc
Confidence            3666666654421         246899998643    235999999999999999999999999999987654 34444


Q ss_pred             EEeecccccccCCCCCCceEEEEEEEEecc--c-----ccCCcccccceeEEeeHhHHhhhhc
Q 031268           99 WEFRSKSRMNSCNSKEGGCRGYMFALEVTE--E-----LESWPEQANYKRIWVSNNHFLWRKH  154 (162)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~--~-----~~~~~~~~~~~~~W~~~~ea~~~~~  154 (162)
                      +......         .....++|.+.+..  .     .....+.+..++.|++++++.+++.
T Consensus       132 ~~~~~~~---------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~  185 (212)
T 2dsc_A          132 VCMDPGL---------SNCTIHIVTVTINGDDAENARPKPKPGDGEFVEVISLPKNDLLQRLD  185 (212)
T ss_dssp             EESCTTT---------BCCEEEEEEEEEETTSGGGSSCCCCCCTTCCCEEEEEEGGGHHHHHH
T ss_pred             EEcCCCc---------cCceEEEEEEEEeCccccccCCCCCCCCCceEEEEEEEHHHHHHHHH
Confidence            3211111         01234555554322  1     1122244567899999999999865

>2a6t_A SPAC19A8.12; alpha/beta/alpha, RNA binding protein,hydrolase; 2.50A {Schizosaccharomyces pombe} SCOP: a.242.1.1 d.113.1.7 PDB: 2qkm_B*

Probab=99.78  E-value=7.1e-19  Score=136.54  Aligned_cols=109  Identities=20%  Similarity=0.161  Sum_probs=72.1

Q ss_pred             eEEEEEEEeccCCcccccccccCceEEEEEEeCC-CCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeeeEEe
Q 031268           23 LVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPN-RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEF  101 (162)
Q Consensus        23 ~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~-~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~~~~  101 (162)
                      .++++|+++.+            .++|||+++.. .+.|.||||++|+|||+++||+||++||||+.+... ..+..|..
T Consensus       102 ~~v~avv~~~~------------~~~vLLv~r~~~~g~W~lPgG~ve~gEs~~eAA~REl~EEtGl~~~~l-~~~~~~~~  168 (271)
T 2a6t_A          102 PVRGAIMLDMS------------MQQCVLVKGWKASSGWGFPKGKIDKDESDVDCAIREVYEETGFDCSSR-INPNEFID  168 (271)
T ss_dssp             CEEEEEEBCSS------------SSEEEEEEESSTTCCCBCSEEECCTTCCHHHHHHHHHHHHHCCCCTTT-CCTTCEEE
T ss_pred             CeEEEEEEECC------------CCEEEEEEEeCCCCeEECCcccCCCCcCHHHHHHHHHHHHhCCCceee-eeeeeecc
Confidence            46778888753            25999999865 567999999999999999999999999999997654 23333321


Q ss_pred             ecccccccCCCCCCceEEEEEEEEecccc---cCCcccccceeEEeeHhHHhhhhc
Q 031268          102 RSKSRMNSCNSKEGGCRGYMFALEVTEEL---ESWPEQANYKRIWVSNNHFLWRKH  154 (162)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~---~~~~~~~~~~~~W~~~~ea~~~~~  154 (162)
                      ....          ....++|.+......   ....+.+..+++|++++++.++..
T Consensus       169 ~~~~----------~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~  214 (271)
T 2a6t_A          169 MTIR----------GQNVRLYIIPGISLDTRFESRTRKEISKIEWHNLMDLPTFKK  214 (271)
T ss_dssp             EEET----------TEEEEEEEECCCCTTCCCC------EEEEEEEEGGGSTTCC-
T ss_pred             CCcC----------CceEEEEEEEEecCcccCCCCCccceeEEEEEEHHHHHHHHh
Confidence            1110          113455655433211   111334557899999999988643

>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A

Probab=99.78  E-value=7.1e-19  Score=136.37  Aligned_cols=94  Identities=15%  Similarity=0.070  Sum_probs=70.3

Q ss_pred             eEEEEEEeCC--CCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeeeEEeecccccccCCCCCCceEEEEEEE
Q 031268           47 VLVLMISTPN--RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMFAL  124 (162)
Q Consensus        47 ~~vLLv~r~~--~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~  124 (162)
                      ++|||+++..  .+.|.||||++|+|||+++||+||++||||+++... ..++.+.+....           ....+|.+
T Consensus       151 ~~vLL~rr~~~~~g~w~lPgG~vE~GEt~eeAa~REv~EEtGl~v~~~-~~~~~~~~~~~~-----------~~~~~f~a  218 (269)
T 1vk6_A          151 DSILLAQHTRHRNGVHTVLAGFVEVGETLEQAVAREVMEESGIKVKNL-RYVTSQPWPFPQ-----------SLMTAFMA  218 (269)
T ss_dssp             TEEEEEEETTTCSSCCBCEEEECCTTCCHHHHHHHHHHHHHCCEEEEE-EEEEEEEEETTE-----------EEEEEEEE
T ss_pred             CEEEEEEecCCCCCcEECCcCcCCCCCCHHHHHHHHHHHHhCceeeeE-EEEEEEecCCCC-----------EEEEEEEE
Confidence            4899999875  467999999999999999999999999999998766 466666543321           14556666


Q ss_pred             EecccccCCcccccceeEEeeHhHHhhh
Q 031268          125 EVTEELESWPEQANYKRIWVSNNHFLWR  152 (162)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~W~~~~ea~~~  152 (162)
                      ..........+.+..+++||+++|+..+
T Consensus       219 ~~~~~~~~~~~~E~~~~~W~~~~el~~l  246 (269)
T 1vk6_A          219 EYDSGDIVIDPKELLEANWYRYDDLPLL  246 (269)
T ss_dssp             EEEECCCCCCTTTEEEEEEEETTSCCSC
T ss_pred             EECCCCcCCCCcceEEEEEEEHHHhhhc
Confidence            6543222222345578999999999876

>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis SP}

Probab=99.77  E-value=1.7e-18  Score=137.39  Aligned_cols=121  Identities=17%  Similarity=0.157  Sum_probs=76.4

Q ss_pred             CceeEEEEEEEeccCCcccccccccCceEEEEEEeCC---CCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCe
Q 031268           20 QLRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPN---RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPL   96 (162)
Q Consensus        20 ~~r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~---~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l   96 (162)
                      ..+.+|++|+++.              ++|||+++..   .+.|.||||++|+|||+++||+||++||||+.+... ..+
T Consensus       201 ~~~~~v~~vi~~~--------------~~vLL~~r~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~-~~~  265 (341)
T 2qjo_A          201 PTFITTDAVVVQA--------------GHVLMVRRQAKPGLGLIALPGGFIKQNETLVEGMLRELKEETRLKVPLP-VLR  265 (341)
T ss_dssp             CCEEEEEEEEEET--------------TEEEEEECCSSSSTTCEECSEEECCTTSCHHHHHHHHHHHHHCCSSCHH-HHH
T ss_pred             CCceEEEEEEEeC--------------CEEEEEEecCCCCCCeEECCCCcCCCCCCHHHHHHHHHhhhhCCccccc-ccc
Confidence            3467888888852              3899999875   467999999999999999999999999999997644 233


Q ss_pred             e----eEEeecccccccCCCCCCceEEEEEEEEecccc-cC-CcccccceeEEeeHhHHhhh---hccccccc
Q 031268           97 G----EWEFRSKSRMNSCNSKEGGCRGYMFALEVTEEL-ES-WPEQANYKRIWVSNNHFLWR---KHSNLVGM  160 (162)
Q Consensus        97 ~----~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~-~~-~~~~~~~~~~W~~~~ea~~~---~~~~l~~~  160 (162)
                      +    ...|......     .......++|.+...... .. .++.+..+++|++++++.++   +.+..+.+
T Consensus       266 ~~~~~~~~~~~~~~~-----~~~~~~~~~f~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~~i  333 (341)
T 2qjo_A          266 GSIVDSHVFDAPGRS-----LRGRTITHAYFIQLPGGELPAVKGGDDAQKAWWMSLADLYAQEEQIYEDHFQI  333 (341)
T ss_dssp             HTEEEEEEECCTTSC-----TTSCEEEEEEEEECCSSSCCCCC------CEEEEEHHHHHHTGGGBCTTHHHH
T ss_pred             ccccceEEEeCCCCC-----CCCcEEEEEEEEEecCCCcCccCCCCceeeEEEeeHHHHhhhhhhhchHHHHH
Confidence            3    1222221110     111233456666554322 11 23345578999999999985   44444433

>3e57_A Uncharacterized protein TM1382; structural genomics, nudix hydrolase, PSI-2, protein structure initiative; 1.89A {Thermotoga maritima}

Probab=99.76  E-value=1.2e-18  Score=130.42  Aligned_cols=111  Identities=13%  Similarity=-0.043  Sum_probs=74.8

Q ss_pred             cCceeEEEEEEEeccCCcccccccccCceEEEEEEeCCC-------CCeee-CCCccCCCCC--H----HHHHHHHHHHH
Q 031268           19 DQLRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNR-------DDLVF-PKGGWEDDET--V----SEAACREALEE   84 (162)
Q Consensus        19 ~~~r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~~-------~~W~l-PgG~ve~gEt--~----~eaa~REl~EE   84 (162)
                      ..++..+..+++..+             ++|||++|...       +.|.+ |||+||+|||  +    ++||+||++||
T Consensus        64 ~~~~q~i~~~II~~~-------------grvLl~~R~~~~~e~~~~g~w~~gPGGhVE~GEs~~p~EtleeAa~REl~EE  130 (211)
T 3e57_A           64 ETTKQVIPYVVIMDG-------------DRVLITKRTTKQSEKRLHNLYSLGIGGHVREGDGATPREAFLKGLEREVNEE  130 (211)
T ss_dssp             TTEEEEEEEEEEEET-------------TEEEEEEC------------CBSSEECCCBGGGCSSHHHHHHHHHHHHHHHH
T ss_pred             CcccceEEEEEEEEC-------------CEEEEEEECCCCCcccccCCcccccceEEeCCCCCCchhhHHHHHHHHHHHH
Confidence            355666666666544             48999998643       46888 9999999999  5    99999999999


Q ss_pred             hCcccccCCCCeeeEEeecccccccCCCCCCceEEEEEEEEecccccCCcccccceeEEeeHhHHhhh
Q 031268           85 AGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWVSNNHFLWR  152 (162)
Q Consensus        85 tGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~W~~~~ea~~~  152 (162)
                      ||+++... ..++.+.+......       ..+..++|.+......  ..+.+..+++|++++++.++
T Consensus       131 tGl~v~~~-~~ig~~~~~~~~~~-------~~~l~~~f~~~~~~g~--~~~~E~~~~~W~~~~eL~~~  188 (211)
T 3e57_A          131 VDVSLREL-EFLGLINSSTTEVS-------RVHLGALFLGRGKFFS--VKEKDLFEWELIKLEELEKF  188 (211)
T ss_dssp             EEEEEEEE-EEEEEEECCSSHHH-------HTEEEEEEEEEEEEEE--ESCTTTCEEEEEEHHHHHHH
T ss_pred             hCCeeecc-EEEEEEeccCCCCC-------eEEEEEEEEEEeCCce--eCCCCeEEEEEEEHHHHHHh
Confidence            99988766 57777765332111       0122346777654322  22334578999999999886

>1x51_A A/G-specific adenine DNA glycosylase; nudix domain, DNA repair, alpha-3 isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.113.1.3

Probab=99.76  E-value=3.9e-18  Score=121.19  Aligned_cols=111  Identities=18%  Similarity=0.205  Sum_probs=73.9

Q ss_pred             CceeEEEEEEEeccCCcccccccccCceEEEEEEeCCC----CCeeeCCCccCCCCCHH-HHHHHHHHHHhC-cccccCC
Q 031268           20 QLRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNR----DDLVFPKGGWEDDETVS-EAACREALEEAG-VRGLLDE   93 (162)
Q Consensus        20 ~~r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~~----~~W~lPgG~ve~gEt~~-eaa~REl~EEtG-l~~~~~~   93 (162)
                      ..+..+.+|+++.++          .+++|||++|...    +.|+||||++++|||++ +||+||++|||| +.+... 
T Consensus        17 ~~~~~~~~vi~~~~~----------~~~~vLl~~R~~~~~~~g~w~~PgG~~e~gE~~~~~a~~REl~EE~g~l~~~~~-   85 (155)
T 1x51_A           17 REESSATCVLEQPGA----------LGAQILLVQRPNSGLLAGLWEFPSVTWEPSEQLQRKALLQELQRWAGPLPATHL-   85 (155)
T ss_dssp             TEEEEEEEEEEEECS----------SSEEEEEEECCCCSTTCSCEECCEEECCSSHHHHHHHHHHHHHHHSCCCCSTTC-
T ss_pred             CeEEEEEEEEEecCC----------CCCEEEEEECCCCCCCCceecCCccccCCCCCHHHHHHHHHHHHHhCCcceeee-
Confidence            345556666666421          1368999998653    57999999999999996 999999999999 776544 


Q ss_pred             CCeeeEEeecccccccCCCCCCceEEEEEEEEecccccCCcccccceeEEeeHhHHhhh
Q 031268           94 NPLGEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWVSNNHFLWR  152 (162)
Q Consensus        94 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~W~~~~ea~~~  152 (162)
                      ..++.+.+....         ....+++|.+.......  ...+..+++|++++++.++
T Consensus        86 ~~l~~~~~~~~~---------~~~~~~~~~~~~~~~~~--~~~e~~~~~W~~~~el~~~  133 (155)
T 1x51_A           86 RHLGEVVHTFSH---------IKLTYQVYGLALEGQTP--VTTVPPGARWLTQEEFHTA  133 (155)
T ss_dssp             EECCCBCCBCSS---------CEEEEEEEEEECSSCCC--CCCCCTTEEEEEHHHHHHS
T ss_pred             eecceEEEecCC---------ccEEEEEEEEEEcCCCC--CCCCCCccEEccHHHhhhc
Confidence            234443322211         12245677776543211  1123467899999999876

>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B

Probab=99.72  E-value=2.1e-17  Score=131.81  Aligned_cols=112  Identities=18%  Similarity=0.126  Sum_probs=73.4

Q ss_pred             ceeEEEEEEEeccCCcccccccccCceEEEEEEeCC---CCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCee
Q 031268           21 LRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPN---RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLG   97 (162)
Q Consensus        21 ~r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~---~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~   97 (162)
                      .+.+|++|+++ +             ++|||+++..   .+.|.||||++|+|||+++||+||++||||+++... ..++
T Consensus       207 ~~~~v~~vv~~-~-------------~~vLL~~r~~~~~~g~w~lPgG~ve~gEt~~~aa~REl~EEtGl~v~~~-~~~~  271 (352)
T 2qjt_B          207 NFVTVDALVIV-N-------------DHILMVQRKAHPGKDLWALPGGFLECDETIAQAIIRELFEETNINLTHE-QLAI  271 (352)
T ss_dssp             EEEEEEEEEEE-T-------------TEEEEEEESSSSSTTCEECSEEECCTTSCHHHHHHHHHHHHHCCSCCHH-HHHH
T ss_pred             CceEEEEEEEE-C-------------CEEEEEEEcCCCCCCeEECCCCcCCCCCCHHHHHHHHHHHhhCCCcccc-hhcc
Confidence            35677777774 2             3899999875   367999999999999999999999999999987643 1222


Q ss_pred             ----eEEeecccccccCCCCCCceEEEEEEEEecccc--cC-CcccccceeEEeeH-hHHhhh
Q 031268           98 ----EWEFRSKSRMNSCNSKEGGCRGYMFALEVTEEL--ES-WPEQANYKRIWVSN-NHFLWR  152 (162)
Q Consensus        98 ----~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~--~~-~~~~~~~~~~W~~~-~ea~~~  152 (162)
                          ...|......     .......++|.+.+....  .. .++.+..+++|+++ +++.++
T Consensus       272 ~~~~~~~~~~~~~~-----~~~~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~W~~~~~el~~~  329 (352)
T 2qjt_B          272 AKRCEKVFDYPDRS-----VRGRTISHVGLFVFDQWPSLPEINAADDAKDVKWISLGSNIKNI  329 (352)
T ss_dssp             HEEEEEEECCTTSC-----TTSEEEEEEEEEEECSCSSCCCCCCCTTEEEEEEEESSHHHHHT
T ss_pred             eeeeeEEecCCCCC-----CCccEEEEEEEEEEeCCCCCCccCCCccceEEEEecHHHHHHhh
Confidence                2222221110     011223445555543322  11 22445678999999 999984

>1q33_A Pyrophosphatase, ADP-ribose pyrophosphatase; nudix fold, hydrolase; HET: BGC; 1.81A {Homo sapiens} SCOP: d.113.1.1 PDB: 1qvj_A*

Probab=99.70  E-value=9e-17  Score=125.89  Aligned_cols=70  Identities=17%  Similarity=0.134  Sum_probs=53.1

Q ss_pred             CceeEEEEEEEeccCCcccccccc----cCceEEEEEEeCCCCCeeeCCCccCCCCCHHHHHHHHHHHHhCccc
Q 031268           20 QLRLVAGCIPYKFEKNDENKNCKM----EKKVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVRG   89 (162)
Q Consensus        20 ~~r~~v~~i~~~~~~~~~~~~~~~----~~~~~vLLv~r~~~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~   89 (162)
                      ++..++.+|+.+.+.+.+..++..    .+..+|||++|...+.|.||||+||+|||+.+||+||++||||+.+
T Consensus       108 gp~~a~~~vv~~~~~~~~g~~~~~~~~g~~~l~vLl~~r~~~g~W~lPGG~Ve~GEs~~eAA~REl~EETGl~~  181 (292)
T 1q33_A          108 GPNHAADPIITRWKRDSSGNKIMHPVSGKHILQFVAIKRKDCGEWAIPGGMVDPGEKISATLKREFGEEALNSL  181 (292)
T ss_dssp             EEEEEEEEEEEEECBCTTSCBCBCTTTCSBCEEEEEEECTTTCSEECCCEECCTTCCHHHHHHHHHHHHHSCGG
T ss_pred             CccccceeeeeeecccccCceeeeccCCCCceEEEEEEecCCCcEeCCCcccCCCCCHHHHHHHHHHHHhCCcc
Confidence            345688888877531111111111    1357999999988889999999999999999999999999999983

>1u20_A U8 snoRNA-binding protein X29; modified nudix hydrolase fold, hydrolase; 2.10A {Xenopus laevis} SCOP: d.113.1.1 PDB: 2a8t_A* 2a8q_A* 2a8p_A* 2a8r_A* 2a8s_A*

Probab=99.68  E-value=1.7e-16  Score=118.89  Aligned_cols=120  Identities=16%  Similarity=0.029  Sum_probs=76.5

Q ss_pred             CceeEEEEEEEeccCCcccccccccCceEEEEEEeCCCCCeeeCCCccCCCC-CHHHHHHHHHHHHhCcccccCCC----
Q 031268           20 QLRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDLVFPKGGWEDDE-TVSEAACREALEEAGVRGLLDEN----   94 (162)
Q Consensus        20 ~~r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~~~~W~lPgG~ve~gE-t~~eaa~REl~EEtGl~~~~~~~----   94 (162)
                      +.+.++.++++..+.  +....-.+++++|||++| ..+.|.||||++|+|| |+++||+||++||||+.+.....    
T Consensus        31 ~~~~~~~~~l~~~~~--~vv~~i~~~~~~vLl~~r-~~g~w~~PGG~ve~gE~t~~~aa~REl~EEtGl~~~~~~l~~~~  107 (212)
T 1u20_A           31 GYKHACHALLHAPSQ--AKLFDRVPIRRVLLMMMR-FDGRLGFPGGFVDTRDISLEEGLKRELEEELGPALATVEVTEDD  107 (212)
T ss_dssp             SCEEEEEEEEEEECC--CEETTTEECCEEEEEEEE-TTSCEECSEEEECTTTSCHHHHHHHHHHHHHCGGGGGCCCCGGG
T ss_pred             CCcccceEEEeCCCc--eEEEEEEecCCEEEEEEe-CCCeEECCCcccCCCCCCHHHHHHHHHHHHHCCCccccceeeee
Confidence            335566666665432  111111223568988887 4678999999999999 99999999999999999765421    


Q ss_pred             CeeeEEeecccccccCCCCCCceEEEEEEEEeccccc----------CCcccccceeEEeeHhHHhhh
Q 031268           95 PLGEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEELE----------SWPEQANYKRIWVSNNHFLWR  152 (162)
Q Consensus        95 ~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~----------~~~~~~~~~~~W~~~~ea~~~  152 (162)
                      .++.+.+...          .....++|.+.......          ...+.+..++.|++++++.+.
T Consensus       108 ~~~~~~~~~~----------~~~~~~~f~~~~~~~~~~~~e~~~~~~~~~~~Ev~~~~wvpl~el~~~  165 (212)
T 1u20_A          108 YRSSQVREHP----------QKCVTHFYIKELKLEEIERIEAEAVNAKDHGLEVMGLIRVPLYTLRDR  165 (212)
T ss_dssp             EEEEEEECTT----------SCEEEEEEEEECCHHHHHHHHHHHTTSTTBTTTEEEEEECCCSBCTTS
T ss_pred             EEEeccccCC----------CcEEEEEEEEEecCCCcccccccccccccCCcceEEEEEEEHHHhhhh
Confidence            2344333221          12356777776543211          012233467999999998653

>3qsj_A Nudix hydrolase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.70A {Alicyclobacillus acidocaldarius subsp}

Probab=99.66  E-value=1e-15  Score=116.15  Aligned_cols=123  Identities=17%  Similarity=0.140  Sum_probs=81.9

Q ss_pred             CceeEEEEEEEeccCCcccccccccCc-eEEEEEEeCCC-----CCeeeCCCccCCCCC--------------------H
Q 031268           20 QLRLVAGCIPYKFEKNDENKNCKMEKK-VLVLMISTPNR-----DDLVFPKGGWEDDET--------------------V   73 (162)
Q Consensus        20 ~~r~~v~~i~~~~~~~~~~~~~~~~~~-~~vLLv~r~~~-----~~W~lPgG~ve~gEt--------------------~   73 (162)
                      .+|.++.+|++++..          ++ .+|||++|...     +.|.||||+||++|+                    +
T Consensus         6 ~~r~aA~lill~~~~----------~g~~~vLl~~R~~~~~~~~g~~~fPGG~vd~~d~~~~~~~~g~~~~~~~~~~~a~   75 (232)
T 3qsj_A            6 DIRKAATLVVIRDGA----------NKDIEVLVVRRAKTMRFLPGFVAFPGGAADPSDAEMAKRAFGRPVCAEDDDDPAL   75 (232)
T ss_dssp             CEEEEEEEEEEEECG----------GGCEEEEEEEECTTCSSSTTCEECSEEECCHHHHHHHHTCBSCCBTCCSTTHHHH
T ss_pred             CCcceEEEEEEEcCC----------CCCeEEEEEEccCCCCCCCCcEECCceeEecCCCCchhhhcccccccccchhhHH
Confidence            467888899988653          23 69999999653     679999999999997                    5


Q ss_pred             HHHHHHHHHHHhCcccccCCC--------------------------------------CeeeEEeecccccccCCCCCC
Q 031268           74 SEAACREALEEAGVRGLLDEN--------------------------------------PLGEWEFRSKSRMNSCNSKEG  115 (162)
Q Consensus        74 ~eaa~REl~EEtGl~~~~~~~--------------------------------------~l~~~~~~~~~~~~~~~~~~~  115 (162)
                      ..||+||++||||+.......                                      .+..+....+     ..+...
T Consensus        76 ~~aAiRE~~EE~Gl~l~~~~~~~~~~~~~~~~~~r~~l~~~~~~f~~~~~~~~l~~~~~~L~~~arWiT-----P~~~~r  150 (232)
T 3qsj_A           76 AVTALRETAEEIGWLLAVRDGEGTKMDTPLAPDEQADLCKGGDALSAWLSARGLAFDLGLLRRIGRFVT-----PPTQPV  150 (232)
T ss_dssp             HHHHHHHHHHHHSCCCSEECTTCCBCCSCCCHHHHHHHTTCTTHHHHHHHTTTCEEBGGGCEEEEEEEC-----CTTSSS
T ss_pred             HHHHHHHHHHHhCceeccccccCcccChhhHHHHHHHHHcCchhHHHHHHHCCCccChhhceeeEEEcC-----CcCCce
Confidence            899999999999997432100                                      0000100000     011234


Q ss_pred             ceEEEEEEEEeccccc-CCcccccceeEEeeHhHHhhhhcccc
Q 031268          116 GCRGYMFALEVTEELE-SWPEQANYKRIWVSNNHFLWRKHSNL  157 (162)
Q Consensus       116 ~~~~~~f~~~~~~~~~-~~~~~~~~~~~W~~~~ea~~~~~~~l  157 (162)
                      ++..++|.+....... .....|..++.|++++|+++....+-
T Consensus       151 RfdT~FFla~lpq~~~v~~d~~E~~~~~W~~p~eal~~~~~G~  193 (232)
T 3qsj_A          151 RFDTRFFLCVGQHLGEPRLHGAELDAALWTPARDMLTRIQSGE  193 (232)
T ss_dssp             EEEEEEEEEECSSCCCCCCCSSSEEEEEEEEHHHHHHHHHTTS
T ss_pred             eEEEEEEEEECCCCCCCCCCCCceEEEEEEcHHHHHHHHHcCC
Confidence            4677888877763321 23445568999999999987655443

>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*

Probab=99.64  E-value=6.2e-16  Score=124.70  Aligned_cols=90  Identities=12%  Similarity=0.030  Sum_probs=68.8

Q ss_pred             eEEEEEEeCCC----CCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeeeEEeecccccccCCCCCCceEEEEE
Q 031268           47 VLVLMISTPNR----DDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMF  122 (162)
Q Consensus        47 ~~vLLv~r~~~----~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f  122 (162)
                      ++|||++|...    |.|+||||++|+| |+++|+.||+.||||+.+... ..++.+.+.....         ....++|
T Consensus       252 g~vLL~rR~~~g~~~GlWefPGG~ve~g-t~~~al~REl~EE~Gl~v~~~-~~l~~~~h~~~h~---------~~~~~~~  320 (369)
T 3fsp_A          252 GRVLIRKRDSTGLLANLWEFPSCETDGA-DGKEKLEQMVGEQYGLQVELT-EPIVSFEHAFSHL---------VWQLTVF  320 (369)
T ss_dssp             SEEEEEECCSSSTTTTCEECCEEECSSS-CTHHHHHHHHTTSSSCCEEEC-CCCCEEEEECSSE---------EEEEEEE
T ss_pred             CEEEEEECCCCCCcCCcccCCCcccCCC-CcHHHHHHHHHHHhCCceeee-cccccEEEEcceE---------EEEEEEE
Confidence            58999999754    6799999999999 999999999999999998776 4677665544321         2245677


Q ss_pred             EEEecccccCCcccccceeEEeeHhHHhhh
Q 031268          123 ALEVTEELESWPEQANYKRIWVSNNHFLWR  152 (162)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~W~~~~ea~~~  152 (162)
                      .+.....     ..+..+++|++++++.++
T Consensus       321 ~~~~~~~-----~~e~~~~~Wv~~~el~~~  345 (369)
T 3fsp_A          321 PGRLVHG-----GPVEEPYRLAPEDELKAY  345 (369)
T ss_dssp             EEEECCS-----SCCCTTEEEEEGGGGGGS
T ss_pred             EEEEcCC-----CCCccccEEeeHHHhhhC
Confidence            7665442     123467899999999875

>2dho_A Isopentenyl-diphosphate delta-isomerase 1; alpha/beta protein; 1.60A {Homo sapiens} PDB: 2i6k_A* 2icj_A 2ick_A*

Probab=99.62  E-value=3.1e-15  Score=113.77  Aligned_cols=118  Identities=14%  Similarity=0.018  Sum_probs=77.1

Q ss_pred             CceeEEEEEEEeccCCcccccccccCceEEEEEEeCC-----CCCeeeC-CCccCCC------CC---HHHHHHHHHHHH
Q 031268           20 QLRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPN-----RDDLVFP-KGGWEDD------ET---VSEAACREALEE   84 (162)
Q Consensus        20 ~~r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~-----~~~W~lP-gG~ve~g------Et---~~eaa~REl~EE   84 (162)
                      .++.++++++++.+             ++|||.+|..     .+.|.+| ||++++|      ||   +.+||+||++||
T Consensus        57 ~~h~av~v~v~~~~-------------g~lLLq~R~~~k~~~pg~W~~p~gG~v~~Ge~E~~~E~~~~~~~Aa~REl~EE  123 (235)
T 2dho_A           57 LLHRAFSVFLFNTE-------------NKLLLQQRSDAKITFPGCFTNTCCSHPLSNPAELEESDALGVRRAAQRRLKAE  123 (235)
T ss_dssp             CCEEEEEEEEECTT-------------CCEEEEEECTTCSSSTTCEESSEEECCBSSHHHHCCGGGHHHHHHHHHHHHHH
T ss_pred             ceEEEEEEEEEcCC-------------CEEEEEEecCcCCCCCCcEEeccCceecCCCcccccccchhHHHHHHHHHHHH
Confidence            35667777777543             4899988853     2579999 5999999      88   499999999999


Q ss_pred             hCcccccC----CCCeeeEEeecccccccCCCCCCceEEEEEEEEecccccCCcccccceeEEeeHhHHhhhhcc
Q 031268           85 AGVRGLLD----ENPLGEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWVSNNHFLWRKHS  155 (162)
Q Consensus        85 tGl~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~W~~~~ea~~~~~~  155 (162)
                      ||+.+...    ...++.+.|........    ......++|.+...... .....+..+++|++++++.+++..
T Consensus       124 lGi~~~~v~~~~l~~l~~~~y~~~~~~~~----~~~e~~~vf~~~~~~~~-~~~~~Ev~~~~wv~~~el~~~l~~  193 (235)
T 2dho_A          124 LGIPLEEVPPEEINYLTRIHYKAQSDGIW----GEHEIDYILLVRMNVTL-NPDPNEIKSYCYVSKEELKELLKK  193 (235)
T ss_dssp             HCCCGGGSCGGGSEEEEEEEEEEECSSSB----EEEEEEEEEEEECCCCC-CCCTTTEEEEEEECHHHHHHHHHH
T ss_pred             HCCCccccChhhcEEEEEEEEeccCCCcc----ceeEEEEEEEEEECCCC-cCChHHEEEEEEEcHHHHHHHHhh
Confidence            99986521    13566665544321110    00113466766654322 222344578999999999987543

>2pny_A Isopentenyl-diphosphate delta-isomerase 2; carotenoid biosynthesis, cholesterol biosynthesis, isomerase isoprene biosynthesis, lipid synthesis; HET: GOL; 1.81A {Homo sapiens}

Probab=99.60  E-value=5.2e-15  Score=113.25  Aligned_cols=118  Identities=11%  Similarity=0.017  Sum_probs=76.9

Q ss_pred             CceeEEEEEEEeccCCcccccccccCceEEEEEEeCC-----CCCeeeCC-CccCCC------CCH---HHHHHHHHHHH
Q 031268           20 QLRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPN-----RDDLVFPK-GGWEDD------ETV---SEAACREALEE   84 (162)
Q Consensus        20 ~~r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~-----~~~W~lPg-G~ve~g------Et~---~eaa~REl~EE   84 (162)
                      .++.++.+++++.+             ++|||.+|..     .+.|.+|+ |++++|      ||+   .+||+||++||
T Consensus        68 ~~h~av~v~v~~~~-------------g~lLLqrRs~~K~~~pG~W~~p~gG~v~~G~~E~~~Et~~~~~eAA~REl~EE  134 (246)
T 2pny_A           68 LLHRAFSVVLFNTK-------------NRILIQQRSDTKVTFPGYFTDSCSSHPLYNPAELEEKDAIGVRRAAQRRLQAE  134 (246)
T ss_dssp             CCEEEEEEEEECTT-------------CCEEEEEECTTCSSSTTCBCCSEEECCBSSHHHHCCGGGHHHHHHHHHHHHHH
T ss_pred             cEEEEEEEEEEeCC-------------CEEEEEEecCCCCCCCCceEeccCceeccCCcccccccchhHHHHHHHHHHHH
Confidence            35667777777543             4899988853     25799995 999999      997   99999999999


Q ss_pred             hCcccccC----CCCeeeEEeecccccccCCCCCCceEEEEEEEEecccccCCcccccceeEEeeHhHHhhhhcc
Q 031268           85 AGVRGLLD----ENPLGEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWVSNNHFLWRKHS  155 (162)
Q Consensus        85 tGl~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~W~~~~ea~~~~~~  155 (162)
                      ||+.+...    ...++.+.|........    ......++|.+...... .....+..+++|++++++.+++..
T Consensus       135 lGi~~~~v~~~~l~~l~~~~y~~~~~~~~----~~~e~~~vf~~~~~~~~-~~~~~Ev~~~~wv~~eel~~~l~~  204 (246)
T 2pny_A          135 LGIPGEQISPEDIVFMTIYHHKAKSDRIW----GEHEICYLLLVRKNVTL-NPDPSETKSILYLSQEELWELLER  204 (246)
T ss_dssp             HCCCTTTCCGGGSEEEEEEEEEEESSSSB----EEEEEEEEEEEECCCCC-CCCTTTEEEEEEECHHHHHHHHHH
T ss_pred             HCCCccccCccccEEEEEEEEEecCCCce----eeeEEEEEEEEEECCCC-CCChHHeeEEEEEeHHHHHHHHHh
Confidence            99986421    13566665544321110    00113456666654322 222345588999999999987543

>2xsq_A U8 snoRNA-decapping enzyme; hydrolase, mRNA decapping, mRNA turnover, structural genomic consortium, SGC; HET: IMP; 1.72A {Homo sapiens} PDB: 3cou_A 3mgm_A

Probab=99.56  E-value=2.4e-14  Score=107.65  Aligned_cols=94  Identities=17%  Similarity=0.049  Sum_probs=61.0

Q ss_pred             EEEEEEeCCCCCeeeCCCccCCCC-CHHHHHHHHHHHHhCcccccCC-CCeeeEEeecccccccCCCCCCceEEEEEEEE
Q 031268           48 LVLMISTPNRDDLVFPKGGWEDDE-TVSEAACREALEEAGVRGLLDE-NPLGEWEFRSKSRMNSCNSKEGGCRGYMFALE  125 (162)
Q Consensus        48 ~vLLv~r~~~~~W~lPgG~ve~gE-t~~eaa~REl~EEtGl~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~  125 (162)
                      ++||+.+. .+.|+||||++|+|| |+++||+||++||||+.+.... ..+..+......        ......++|.+.
T Consensus        66 ~~ll~~r~-~g~w~lPGG~ve~gE~t~~eaa~REl~EEtGl~~~~~~l~~l~~~~~~~~~--------~~~~~~~~f~~~  136 (217)
T 2xsq_A           66 AILMQMRF-DGRLGFPGGFVDTQDRSLEDGLNRELREELGEAAAAFRVERTDYRSSHVGS--------GPRVVAHFYAKR  136 (217)
T ss_dssp             EEEEEEET-TSCEECSEEECCTTCSSHHHHHHHHHHHHHCGGGGGCCCCGGGEEEEEECS--------SSSEEEEEEEEE
T ss_pred             cEEEEEcc-CCeEECCceecCCCCCCHHHHHHHHHHHHHCCCCccceeEEEEEEeecCCC--------CCeEEEEEEEEE
Confidence            45665554 578999999999999 9999999999999999976421 223333211110        012345667776


Q ss_pred             eccccc----------CCcccccceeEEeeHhHHh
Q 031268          126 VTEELE----------SWPEQANYKRIWVSNNHFL  150 (162)
Q Consensus       126 ~~~~~~----------~~~~~~~~~~~W~~~~ea~  150 (162)
                      +.....          ...+.+..++.|++++++.
T Consensus       137 l~~~~~~~~e~~~~~~~~~~~E~~~v~~vPl~~l~  171 (217)
T 2xsq_A          137 LTLEELLAVEAGATRAKDHGLEVLGLVRVPLYTLR  171 (217)
T ss_dssp             CCHHHHHHHHHHGGGSTTBTTTEEEEEECCCSBCT
T ss_pred             eccccceecccccccccccCCceeeEEEEEHHHhh
Confidence            543211          1112344788999999887

>3dup_A MUTT/nudix family protein; nudix superfamily hydrolase, hydrolase 3 family, structural protein structure initiative, PSI; HET: MSE; 1.80A {Rhodospirillum rubrum atcc 11170}

Probab=99.55  E-value=7.8e-14  Score=109.34  Aligned_cols=122  Identities=12%  Similarity=0.093  Sum_probs=82.0

Q ss_pred             cCceeEEEEEEEeccCCcccccccccCceEEEEEEeCC-----CCCe-eeCCCccCCCCCHHHHHHHHHHHHhCcccccC
Q 031268           19 DQLRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPN-----RDDL-VFPKGGWEDDETVSEAACREALEEAGVRGLLD   92 (162)
Q Consensus        19 ~~~r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~-----~~~W-~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~   92 (162)
                      +-.+..|-+.+|..++          ++.++||.+|..     .+.| .+++|++++|||+.+||+||+.||+|+.....
T Consensus       115 G~~~~~vh~~~~~~~~----------~~~~lll~rRs~~K~~~PG~wd~svaG~i~~GEs~~eaA~REl~EElGI~~~~~  184 (300)
T 3dup_A          115 GVRAYGVHLNGYVGAG----------ADLHLWIGRRSPDKSVAPGKLDNMVAGGQPADLSLRQNLIKECAEEADLPEALA  184 (300)
T ss_dssp             TCCEEEEEEEEEESCG----------GGCEEEEEEECTTCSSSTTCEEESEEEECCTTSCHHHHHHHHHHHHHCCCHHHH
T ss_pred             ceEEEEEEEEEEEecC----------CeeEEEEEeCCCcccCCCCccccccccCCCCCCCHHHHHHHHHHHHhCCChhhh
Confidence            3446677777787653          356888888853     2669 69999999999999999999999999986532


Q ss_pred             C--CCeeeEEeecccccccCCCCCCceEEEEEEEEeccccc-CCcccccceeEEeeHhHHhhhhcc
Q 031268           93 E--NPLGEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEELE-SWPEQANYKRIWVSNNHFLWRKHS  155 (162)
Q Consensus        93 ~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~-~~~~~~~~~~~W~~~~ea~~~~~~  155 (162)
                      .  ..++.+.|.......     ......++|.+.+..... ...++|..+++|++++|+.+++..
T Consensus       185 ~~l~~~g~i~y~~~~~~G-----~~~E~~~vy~~~l~~~~~p~~~~~EV~~~~~v~~~El~~~l~~  245 (300)
T 3dup_A          185 RQAIPVGAITYCMESPAG-----IKPDTLFLYDLALPEDFRPHNTDGEMADFMLWPAAKVVEAVRT  245 (300)
T ss_dssp             TTCEEEEEEEEEEEETTE-----EEEEEEEEEEEECCTTCCCCCTTSSEEEEEEEEHHHHHHHHHH
T ss_pred             hhccccceEEEEEecCCC-----eEEEEEEEEEEEecCCCcCCCCchHhheEEEECHHHHHHHHhc
Confidence            1  234555544322111     011245677776654322 223345688999999999988654

>3rh7_A Hypothetical oxidoreductase; FMN-binding split barrel, nudix, structural genomics, joint for structural genomics, JCSG; HET: FMN; 3.00A {Sinorhizobium meliloti}

Probab=99.46  E-value=8.8e-14  Score=110.14  Aligned_cols=104  Identities=13%  Similarity=0.129  Sum_probs=73.7

Q ss_pred             CceeEEEEEEEeccCCcccccccccCceEEEEEEeCCCCCeeeCCCccCCCCCHHHHHHHHHHHHh-CcccccCCCCeee
Q 031268           20 QLRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEA-GVRGLLDENPLGE   98 (162)
Q Consensus        20 ~~r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~~~~W~lPgG~ve~gEt~~eaa~REl~EEt-Gl~~~~~~~~l~~   98 (162)
                      +++..|++|+.+.              ++|||+  .+.+ |.||||.++  ++..++|+||++||| |++++.. .+++.
T Consensus       181 ~p~~~vgaii~~~--------------g~vLL~--~~~G-W~LPG~~~~--~~~~~~a~RE~~EEttGl~v~~~-~L~~v  240 (321)
T 3rh7_A          181 EGEIRLGAVLEQQ--------------GAVFLA--GNET-LSLPNCTVE--GGDPARTLAAYLEQLTGLNVTIG-FLYSV  240 (321)
T ss_dssp             HSCEEEEEEEESS--------------SCEEEB--CSSE-EBCCEEEES--SSCHHHHHHHHHHHHHSSCEEEE-EEEEE
T ss_pred             CCcceEEEEEEEC--------------CEEEEe--eCCC-ccCCcccCC--CChhHHHHHHHHHHhcCCEEeec-eEEEE
Confidence            4678899999874              379999  5567 999988654  444469999999997 9999877 57777


Q ss_pred             EEeecccccccCCCCCCceEEEEEEEEecccccCCcccccceeEEeeHhHHhhh--hcccccccc
Q 031268           99 WEFRSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWVSNNHFLWR--KHSNLVGMI  161 (162)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~W~~~~ea~~~--~~~~l~~~v  161 (162)
                      |+....           .....+|.+...+..       ..+++||+++|+..+  ..+..+.|+
T Consensus       241 ~~~~~~-----------~~~~i~f~~~~~~g~-------~~e~~~f~~~elp~~~~~~~~~~~~L  287 (321)
T 3rh7_A          241 YEDKSD-----------GRQNIVYHALASDGA-------PRQGRFLRPAELAAAKFSSSATADII  287 (321)
T ss_dssp             EECTTT-----------CCEEEEEEEEECSSC-------CSSSEEECHHHHTTCEESSHHHHHHH
T ss_pred             EEcCCC-----------ceEEEEEEEEeCCCC-------eeeeEEECHHHCCCcccCCHHHHHHH
Confidence            763321           113457777765321       257899999999876  345555543

>3bho_A Cleavage and polyadenylation specificity factor subunit 5; CPSF5, RNA processing, cleavage factor, diadenosine tetraphosphate, mRNA processing; HET: B4P; 1.80A {Homo sapiens} PDB: 3bap_A 3mdg_A 3mdi_A 2cl3_A 3n9u_A 3q2s_A 3q2t_A 2j8q_A 3p5t_A 3p6y_A

Probab=99.44  E-value=5.7e-13  Score=98.26  Aligned_cols=116  Identities=17%  Similarity=0.173  Sum_probs=72.5

Q ss_pred             cCceeEEEEEEEeccCCcccccccccCceEEEEEEeCCCCCeeeCCCccCCCCCHHHHHHHHHHHHhCc------ccccC
Q 031268           19 DQLRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGV------RGLLD   92 (162)
Q Consensus        19 ~~~r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl------~~~~~   92 (162)
                      .+.|.+|.+|++..+.          +..+|||+++ ..+.|.||||++|+||++++|+.||+.||+|+      ..++.
T Consensus        55 ~g~R~sV~avil~~~~----------~~phVLLlq~-~~~~f~LPGGkle~gE~~~eaL~REL~EELg~~~~~~~~~eIg  123 (208)
T 3bho_A           55 IGMRRTVEGVLIVHEH----------RLPHVLLLQL-GTTFFKLPGGELNPGEDEVEGLKRLMTEILGRQDGVLQDWVID  123 (208)
T ss_dssp             HCSEEEEEEEEEEEET----------TEEEEEEEEE-ETTEEECSEEECCTTCCHHHHHHHHHHHHHCCCC-----CEEE
T ss_pred             hCCceEEEEEEEEcCC----------CCcEEEEEEc-CCCcEECCCcccCCCCCHHHHHHHHHHHHhCCCcCCCccEEEh
Confidence            4778888777775443          2468999997 45689999999999999999999999999994      33334


Q ss_pred             CCCeeeEEeecccccccCCC-----CCCceEEEEEEEEeccccc-CCcccccceeEEeeHhHH
Q 031268           93 ENPLGEWEFRSKSRMNSCNS-----KEGGCRGYMFALEVTEELE-SWPEQANYKRIWVSNNHF  149 (162)
Q Consensus        93 ~~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~f~~~~~~~~~-~~~~~~~~~~~W~~~~ea  149 (162)
                       ..+|.|.-+... ...++.     ........+|.+....... ..|.  ..++.=+++=|+
T Consensus       124 -e~lg~wwRp~fe-t~~YPYlP~Hit~pKE~~kly~V~Lp~~~~f~vPk--n~kL~AvPLfel  182 (208)
T 3bho_A          124 -DCIGNWWRPNFE-PPQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPK--NYKLVAAPLFEL  182 (208)
T ss_dssp             -EEEEEEEECSSS-SCCBSSCCTTCCSCSEEEEEEEEECCSSEEEEEET--TCEEEEEEHHHH
T ss_pred             -heEEEEecCCCC-CcCCCCCCcccCchhhheeeeeEecCccceEecCC--CCeEEeecHHhh
Confidence             456665322211 111110     1122355777776654322 2222  134555565555

>3kvh_A Protein syndesmos; NUDT16-like, NUDT16L1, nudix, RNA regulation, RNA structural genomics consortium, SGC, RNA degradation, RNA B protein; 1.70A {Homo sapiens}

Probab=99.36  E-value=4.5e-13  Score=97.97  Aligned_cols=98  Identities=11%  Similarity=0.041  Sum_probs=60.8

Q ss_pred             cccCceeEEEEEEEeccCCcccccccccCceEEEEEEeCCCCCeeeCCCccCCCC-CHHHHHHHHHHHHhCc-ccccCCC
Q 031268           17 YEDQLRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDLVFPKGGWEDDE-TVSEAACREALEEAGV-RGLLDEN   94 (162)
Q Consensus        17 ~~~~~r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~~~~W~lPgG~ve~gE-t~~eaa~REl~EEtGl-~~~~~~~   94 (162)
                      .+.++|+++-|++|..+..  ..--..+-. ..+|++-+..+.|+||||+||+|| |+++|+.||+.||+|+ .+... .
T Consensus        16 ~~~~~~hach~mlya~~~~--~lfg~~p~r-~~iLmQ~R~~G~weFPGGkVe~gE~t~e~aL~REl~EElg~~~V~~~-~   91 (214)
T 3kvh_A           16 LGPGWSHSCHAMLYAANPG--QLFGRIPMR-FSVLMQMRFDGLLGFPGGFVDRRFWSLEDGLNRVLGLGLGCLRLTEA-D   91 (214)
T ss_dssp             SCTTCEEEEEEEEEEEEEE--EETTTEEEE-EEEEEEEETTSCEECSEEEECTTTCCHHHHHHHSCCSCC---CCCGG-G
T ss_pred             hccCccEeeEEEEEcCCcc--ccccccchh-heEEEeeeeCCEEeCCCccCCCCCCCHHHHHHHHHHHhhCCeeeeee-e
Confidence            3457899999999987530  111111112 234455555688999999999999 9999999999999997 34433 2


Q ss_pred             CeeeEEeecccccccCCCCCCceEEEEEEEEecc
Q 031268           95 PLGEWEFRSKSRMNSCNSKEGGCRGYMFALEVTE  128 (162)
Q Consensus        95 ~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~  128 (162)
                      .+.+..+...          .....++|.+....
T Consensus        92 y~~s~~~~yp----------~~V~LHfY~crl~~  115 (214)
T 3kvh_A           92 YLSSHLTEGP----------HRVVAHLYARQLTL  115 (214)
T ss_dssp             EEEEEEC--------------CEEEEEEEEECCH
T ss_pred             eEEEEeccCC----------CEEEEEEEEEEeeC
Confidence            3333332221          12357788887654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	162
d2fvva1	135	d.113.1.1 (A:8-142) Diphosphoinositol polyphosphat	7e-12
d1xsba_	153	d.113.1.1 (A:) Diadenosine tetraphosphate hydrolas	8e-06
d1k2ea_	152	d.113.1.1 (A:) Hypothetical protein PAE3301 {Archa	2e-05
d1q33a_	292	d.113.1.1 (A:) NUDT9 (mitochondrial ADP-ribose pyr	2e-04
d1vcda1	126	d.113.1.1 (A:1-126) AP6A hydrolase Ndx1 {Thermus t	3e-04
d1sjya_	158	d.113.1.1 (A:) Hypothetical protein DR1025 {Deinoc	3e-04
d1irya_	156	d.113.1.1 (A:) 7,8-dihydro-8-oxoguanine triphospha	4e-04
d2azwa1	147	d.113.1.1 (A:2-148) Hypothetical protein EF1141 {E	0.003
d2fmla2	202	d.113.1.6 (A:3-204) Hypothetical protein EF2700, N	0.004

>d2fvva1 d.113.1.1 (A:8-142) Diphosphoinositol polyphosphate phosphohydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 135

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diphosphoinositol polyphosphate phosphohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.5 bits (138), Expect = 7e-12
 Identities = 41/136 (30%), Positives = 61/136 (44%), Gaps = 24/136 (17%)

Query: 12  RLRQRYEDQLRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDLVFPKGGWEDDE 71
           + R    D  +  A C+ ++ E  +E           +L+ S+ + D  + P GG E +E
Sbjct: 1   QTRTYDGDGYKKRAACLCFRSESEEEV----------LLVSSSRHPDRWIVPGGGMEPEE 50

Query: 72  TVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEELE 131
             S AA RE  EEAGV+G L    +G +E + +             R Y++ L VTE LE
Sbjct: 51  EPSVAAVREVCEEAGVKGTLGR-LVGIFENQERK-----------HRTYVYVLIVTEVLE 98

Query: 132 SWPEQANY--KRIWVS 145
            W +  N   KR W  
Sbjct: 99  DWEDSVNIGRKREWFK 114

>d1xsba_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Human (Homo sapiens) [TaxId: 9606]} Length = 153

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (96), Expect = 8e-06
 Identities = 23/122 (18%), Positives = 37/122 (30%), Gaps = 10/122 (8%)

Query: 25  AGCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDL-VFPKGGWEDDETVSEAACREALE 83
            G I ++     +  N  +E     L++   +       PKG  E  E   E A R   E
Sbjct: 11  CGLIIFRRCLIPKVDNNAIE----FLLLQASDGIHHWTPPKGHVEPGEDDLETALRATQE 66

Query: 84  EAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIW 143
           EAG+         G     +    N   +       Y  A     ++E      +    W
Sbjct: 67  EAGIEAGQLTIIEGFKRELNYVARNKPKTVI-----YWLAEVKDYDVEIRLSHEHQAYRW 121

Query: 144 VS 145
           + 
Sbjct: 122 LG 123

>d1k2ea_ d.113.1.1 (A:) Hypothetical protein PAE3301 {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 152

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein PAE3301
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score = 40.2 bits (93), Expect = 2e-05
 Identities = 14/40 (35%), Positives = 20/40 (50%)

Query: 49 VLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVR 88
          VL++        ++P G  E +ET  EA  RE  EE G+ 
Sbjct: 14 VLLVKHKRLGVYIYPGGHVEHNETPIEAVKREFEEETGIV 53

>d1q33a_ d.113.1.1 (A:) NUDT9 (mitochondrial ADP-ribose pyrophosphatase) {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: NUDT9 (mitochondrial ADP-ribose pyrophosphatase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.7 bits (87), Expect = 2e-04
 Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 1/44 (2%)

Query: 45  KKVL-VLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGV 87
           K +L  + I   +  +   P G  +  E +S    RE  EEA  
Sbjct: 136 KHILQFVAIKRKDCGEWAIPGGMVDPGEKISATLKREFGEEALN 179

>d1vcda1 d.113.1.1 (A:1-126) AP6A hydrolase Ndx1 {Thermus thermophilus [TaxId: 274]} Length = 126

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: AP6A hydrolase Ndx1
species: Thermus thermophilus [TaxId: 274]

 Score = 36.5 bits (84), Expect = 3e-04
 Identities = 25/102 (24%), Positives = 33/102 (32%), Gaps = 14/102 (13%)

Query: 44  EKKVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRS 103
           +++VL+L          VFPKG  E  E++ EAA RE  EE GVR               
Sbjct: 13  KREVLLL---RDRMGFWVFPKGHPEPGESLEEAAVREVWEETGVRA---------EVLLP 60

Query: 104 KSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWVS 145
                  N K      + F +                  W S
Sbjct: 61  LYPTRYVNPKGVEREVHWFLMRGEGAPRLEEGMTGAG--WFS 100

>d1sjya_ d.113.1.1 (A:) Hypothetical protein DR1025 {Deinococcus radiodurans [TaxId: 1299]} Length = 158

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein DR1025
species: Deinococcus radiodurans [TaxId: 1299]

 Score = 37.1 bits (85), Expect = 3e-04
 Identities = 21/84 (25%), Positives = 31/84 (36%), Gaps = 7/84 (8%)

Query: 62  FPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYM 121
            P G  ED E   +AA REA EE G+R +     LG +  R        +        ++
Sbjct: 46  IPSGAVEDGENPQDAAVREACEETGLR-VRPVKFLGAYLGRFP------DGVLILRHVWL 98

Query: 122 FALEVTEELESWPEQANYKRIWVS 145
              E  + L         +  +VS
Sbjct: 99  AEPEPGQTLAPAFTDEIAEASFVS 122

>d1irya_ d.113.1.1 (A:) 7,8-dihydro-8-oxoguanine triphosphatase Hmth1 {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: 7,8-dihydro-8-oxoguanine triphosphatase Hmth1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (84), Expect = 4e-04
 Identities = 16/92 (17%), Positives = 36/92 (39%), Gaps = 4/92 (4%)

Query: 62  FPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYM 121
              G  ++ ET+ + A RE  EE+G+      + +G+  F         +          
Sbjct: 34  GFGGKVQEGETIEDGARRELQEESGLTV-DALHKVGQIVFEFVGEPELMDVHVFCTDSIQ 92

Query: 122 FALEVTEELE-SW--PEQANYKRIWVSNNHFL 150
                ++E+   W   +Q  +K +W  ++++ 
Sbjct: 93  GTPVESDEMRPCWFQLDQIPFKDMWPDDSYWF 124

>d2azwa1 d.113.1.1 (A:2-148) Hypothetical protein EF1141 {Enterococcus faecalis [TaxId: 1351]} Length = 147

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein EF1141
species: Enterococcus faecalis [TaxId: 1351]

 Score = 34.0 bits (77), Expect = 0.003
 Identities = 25/102 (24%), Positives = 38/102 (37%), Gaps = 6/102 (5%)

Query: 44  EKKVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRS 103
            +   ++++  PN      P G  E  ET  EA  RE LEE G+   +    LGE +   
Sbjct: 27  PENNTMVLVQAPN-GAYFLPGGEIEGTETKEEAIHREVLEELGISVEIGC-YLGEADE-- 82

Query: 104 KSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWVS 145
                S + +        F +  T    S P +      WV+
Sbjct: 83  --YFYSNHRQTAYYNPGYFYVANTWRQLSEPLERTNTLHWVA 122

>d2fmla2 d.113.1.6 (A:3-204) Hypothetical protein EF2700, N-terminal domain {Enterococcus faecalis [TaxId: 1351]} Length = 202

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: BT0354 N-terminal domain-like
domain: Hypothetical protein EF2700, N-terminal domain
species: Enterococcus faecalis [TaxId: 1351]

 Score = 34.0 bits (77), Expect = 0.004
 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 3/43 (6%)

Query: 49 VLMI---STPNRDDLVFPKGGWEDDETVSEAACREALEEAGVR 88
          VL+I     P R+    P G    +E+  ++  RE  EE GV 
Sbjct: 56 VLLIQRKGHPFRNSWALPGGFVNRNESTEDSVLRETKEETGVV 98

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	162
d1vcda1	126	AP6A hydrolase Ndx1 {Thermus thermophilus [TaxId:	99.92
d2fvva1	135	Diphosphoinositol polyphosphate phosphohydrolase {	99.91
d1ktga_	137	Diadenosine tetraphosphate hydrolase (Ap4A hydrola	99.91
d2fb1a2	147	Hypothetical protein BT0354, N-terminal domain {Ba	99.89
d1sjya_	158	Hypothetical protein DR1025 {Deinococcus radiodura	99.88
d2b0va1	146	Hypothetical protein NE0184 {Nitrosomonas europaea	99.88
d2azwa1	147	Hypothetical protein EF1141 {Enterococcus faecalis	99.87
d1jkna_	165	Diadenosine tetraphosphate hydrolase (Ap4A hydrola	99.87
d2a6ta2	151	mRNA decapping enzyme Dcp2p catalytic domain {Schi	99.87
d1ryaa_	160	GDP-mannose mannosyl hydrolase NudD {Escherichia c	99.87
d1k2ea_	152	Hypothetical protein PAE3301 {Archaeon Pyrobaculum	99.87
d1vk6a2	131	NADH pyrophosphatase {Escherichia coli [TaxId: 562	99.87
d1irya_	156	7,8-dihydro-8-oxoguanine triphosphatase Hmth1 {Hum	99.86
d1xsba_	153	Diadenosine tetraphosphate hydrolase (Ap4A hydrola	99.86
d2b06a1	155	Hypothetical protein SP1235 (spr1115) {Streptococc	99.86
d1puna_	129	Nucleoside triphosphate pyrophosphorylase (MutT) {	99.84
d1v8ya_	158	ADP-ribose pyrophosphatase {Thermus thermophilus [	99.83
d2fmla2	202	Hypothetical protein EF2700, N-terminal domain {En	99.83
d2fkba1	161	Hypothetical protein YfcD {Escherichia coli [TaxId	99.82
d1hzta_	153	Isopentenyl diphosphate isomerase {Escherichia col	99.81
d2o5fa1	162	Hypothetical protein DR0079 {Deinococcus radiodura	99.81
d1mqea_	202	ADP-ribose pyrophosphatase {Mycobacterium tubercul	99.81
d1vhza_	186	ADP compounds hydrolase NudE {Escherichia coli [Ta	99.8
d1g0sa_	209	ADP-ribose pyrophosphatase {Escherichia coli [TaxI	99.77
d1nqza_	187	Coenzyme A pyrophosphatase {Deinococcus radioduran	99.77
d1q33a_	292	NUDT9 (mitochondrial ADP-ribose pyrophosphatase) {	99.67
d1viua_	189	ADP-ribose pyrophosphatase homologue YffH {Escheri	99.66
d1rrqa2	127	Adenine glycosylase MutY, C-terminal domain {Bacil	99.6
d1u20a1	196	U8 snorna-binding protein x29 {African clawed frog	99.58
d1x51a1	142	A/G-specific adenine DNA glycosylase {Human (Homo	99.27

>d1vcda1 d.113.1.1 (A:1-126) AP6A hydrolase Ndx1 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: AP6A hydrolase Ndx1
species: Thermus thermophilus [TaxId: 274]

Probab=99.92  E-value=1.2e-24  Score=149.22  Aligned_cols=115  Identities=25%  Similarity=0.244  Sum_probs=83.8

Q ss_pred             ceeEEEEEEEeccCCcccccccccCceEEEEEEeCCCCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeeeEE
Q 031268           21 LRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWE  100 (162)
Q Consensus        21 ~r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~~~  100 (162)
                      +++.||+|+++.+             ++|||++++ .+.|.||||++|+|||+.+||+||++||||+++... ..++.+.
T Consensus         1 ~~v~agavv~~~~-------------~~vLl~~~~-~g~w~~PgG~ve~gEt~~~aa~RE~~EEtGi~~~~~-~~~~~~~   65 (126)
T d1vcda1           1 MELGAGGVVFNAK-------------REVLLLRDR-MGFWVFPKGHPEPGESLEEAAVREVWEETGVRAEVL-LPLYPTR   65 (126)
T ss_dssp             CEEEEEEEEECTT-------------SCEEEEECT-TSCEECCEECCCTTCCHHHHHHHHHHHHHCCEEEEE-EEEEEEE
T ss_pred             CEEEEEEEEEECC-------------CEEEEEEcC-CCCEECCccccCCCCCHHHHHHHHHHHHcCCeeEEE-EEEeeee
Confidence            3678999999765             378888764 578999999999999999999999999999998765 4566555


Q ss_pred             eecccccccCCCCCCceEEEEEEEEecccccCCcccccceeEEeeHhHHhhhh-ccccccc
Q 031268          101 FRSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWVSNNHFLWRK-HSNLVGM  160 (162)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~W~~~~ea~~~~-~~~l~~~  160 (162)
                      |.....        ....+++|.+.....  ..+++++.+++|++++++.+++ .+..+.+
T Consensus        66 ~~~~~~--------~~~~~~~~~~~~~~~--~~~~~e~~~~~W~~~~e~~~~~~~~~~~~i  116 (126)
T d1vcda1          66 YVNPKG--------VEREVHWFLMRGEGA--PRLEEGMTGAGWFSPEEARALLAFPEDLGL  116 (126)
T ss_dssp             EECTTS--------CEEEEEEEEEEEESC--CCCCTTCCEEEEECHHHHHHHBCSHHHHHH
T ss_pred             eccCCC--------eEEEEEEEEEEEcCC--CCCCccceEEEEEEHHHHhhccCChHHHHH
Confidence            443321        123456676665432  2234456789999999999874 4555444

>d2fvva1 d.113.1.1 (A:8-142) Diphosphoinositol polyphosphate phosphohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diphosphoinositol polyphosphate phosphohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=9.6e-25  Score=151.09  Aligned_cols=117  Identities=27%  Similarity=0.360  Sum_probs=81.1

Q ss_pred             cccCceeEEEEEEEeccCCcccccccccCceEEEEEEeC-CCCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCC
Q 031268           17 YEDQLRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTP-NRDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENP   95 (162)
Q Consensus        17 ~~~~~r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~-~~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~   95 (162)
                      .+.++|..|||||++.++           +..+||++++ ..+.|.||||++++|||+.+||+||++||||+.+... ..
T Consensus         6 ~~~~~r~~a~~vv~~~~~-----------~~~~lL~~~~~~~~~W~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~-~~   73 (135)
T d2fvva1           6 DGDGYKKRAACLCFRSES-----------EEEVLLVSSSRHPDRWIVPGGGMEPEEEPSVAAVREVCEEAGVKGTLG-RL   73 (135)
T ss_dssp             CTTSCEEEEEEEEESSTT-----------CCEEEEEECSSCTTSEECSEEECCTTCCHHHHHHHHHHHHHCEEEEEE-EE
T ss_pred             CCCCCceEEEEEEEEecC-----------CCEEEEEEEeCCCCcEECCccccCCCCCHHHHHHHHHHHHhCCcceee-EE
Confidence            346899999999998764           4566777664 4467999999999999999999999999999998766 45


Q ss_pred             eeeEEeecccccccCCCCCCceEEEEEEEEecccccCCcccccceeEEeeHhHHhhhhc
Q 031268           96 LGEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWVSNNHFLWRKH  154 (162)
Q Consensus        96 l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~W~~~~ea~~~~~  154 (162)
                      ++.+.+.....         ...+++|.+.........+..+..+++||+++|+.+++.
T Consensus        74 ~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~e~~~~l~  123 (135)
T d2fvva1          74 VGIFENQERKH---------RTYVYVLIVTEVLEDWEDSVNIGRKREWFKIEDAIKVLQ  123 (135)
T ss_dssp             EEEEEETTTTE---------EEEEEEEEEEEECSSCHHHHHHCCCEEEEEHHHHHHHHT
T ss_pred             EEEEeeccCCc---------cEEEEEEEEEeecCCCCCCCCceeEEEEEEHHHHHHHHh
Confidence            56555433221         112222222221111112233457899999999999864

>d1ktga_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.91  E-value=6.2e-24  Score=146.74  Aligned_cols=122  Identities=15%  Similarity=0.081  Sum_probs=85.2

Q ss_pred             eEEEEEEEeccCCcccccccccCceEEEEEEeCC-CCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeeeEEe
Q 031268           23 LVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPN-RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEF  101 (162)
Q Consensus        23 ~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~-~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~~~~  101 (162)
                      .++|+|+|+..+          ++.++||++++. .+.|.||||++|+|||+.+||+||++||||+++... ..+..+..
T Consensus         3 raag~vv~~~~~----------~~~~~Ll~~r~~~~g~W~~PgG~ie~gE~~~~aa~RE~~EEtGl~~~~~-~~~~~~~~   71 (137)
T d1ktga_           3 KAAGLVIYRKLA----------GKIEFLLLQASYPPHHWTPPKGHVDPGEDEWQAAIRETKEEANITKEQL-TIHEDCHE   71 (137)
T ss_dssp             EEEEEEEEEEET----------TEEEEEEEEESSTTCCEESSEEECCTTCCHHHHHHHHHHHHHCCCGGGE-EEEEEEEE
T ss_pred             EEEEEEEEEEcC----------CCEEEEEEEEcCCCCcEeCcccccccCCCHHHHHHHHHHHHhCCcceee-eeeeeeee
Confidence            478999998764          478999999864 568999999999999999999999999999997654 23332221


Q ss_pred             ecccccccCCCCCCceEEEEEEEEecccccCCcccccceeEEeeHhHHhhhh-ccccccc
Q 031268          102 RSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWVSNNHFLWRK-HSNLVGM  160 (162)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~W~~~~ea~~~~-~~~l~~~  160 (162)
                      ......     ....+...+|.+.........++.+..+++|++++++.++. .++++++
T Consensus        72 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~  126 (137)
T d1ktga_          72 TLFYEA-----KGKPKSVKYWLAKLNNPDDVQLSHEHQNWKWCELEDAIKIADYAEMGSL  126 (137)
T ss_dssp             EEEEEE-----TTEEEEEEEEEEEECSCCCCCCCTTEEEEEEECHHHHHHHHCCHHHHHH
T ss_pred             eeecCC-----CcceEEEEEEEEEecCCCCcCCCcceEEEEEEEHHHHHHhcCCHHHHHH
Confidence            111110     11123455566655554444455566889999999999874 4665554

>d2fb1a2 d.113.1.6 (A:3-149) Hypothetical protein BT0354, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: BT0354 N-terminal domain-like
domain: Hypothetical protein BT0354, N-terminal domain
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=99.89  E-value=9.9e-24  Score=148.43  Aligned_cols=116  Identities=16%  Similarity=0.189  Sum_probs=82.1

Q ss_pred             CceeEEEEEEEeccCCcccccccccCceEEEEEEeCC---CCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCe
Q 031268           20 QLRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPN---RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPL   96 (162)
Q Consensus        20 ~~r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~---~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l   96 (162)
                      .++++|+||+|+.++          ++.+|||++|..   .+.|.||||++++|||+++||+||++||||++.... .++
T Consensus         8 ~~~v~Vd~Vi~~~~~----------~~~~vLLv~R~~~p~~g~W~lPGG~ie~~Es~~~aa~REl~EEtGl~~~~~-~~~   76 (147)
T d2fb1a2           8 TFYLGIDCIIFGFNE----------GEISLLLLKRNFEPAMGEWSLMGGFVQKDESVDDAAKRVLAELTGLENVYM-EQV   76 (147)
T ss_dssp             CEEEEEEEEEEEEET----------TEEEEEEEECSSSSSTTCEECEEEECCTTSCHHHHHHHHHHHHHCCCSCEE-EEE
T ss_pred             CcceEEEEEEEEEeC----------CcCEEEEEEccCCCCCCcEeCcEeeecCCCCHHHHHHHHHHHHhCCcccce-eee
Confidence            557889999998665          467999999864   377999999999999999999999999999987665 466


Q ss_pred             eeEEeecccccccCCCCCCceEEEEEEEEecccccCCcccccceeEEeeHhHHhhhh
Q 031268           97 GEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWVSNNHFLWRK  153 (162)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~W~~~~ea~~~~  153 (162)
                      +.++......       .......+|.+.+.........++..+++||+++++.++.
T Consensus        77 ~~~~~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~~e~~~~~W~~~~~lp~la  126 (147)
T d2fb1a2          77 GAFGAIDRDP-------GERVVSIAYYALININEYDRELVQKHNAYWVNINELPALI  126 (147)
T ss_dssp             EEECCTTSSS-------SSCEEEEEEEEECCTTSSCHHHHHHTTEEEEETTSCCCBS
T ss_pred             eEecCCcccC-------CCceEEEEEEEEecCCcccCCCcchhheEEecHHhchhcc
Confidence            7664333221       1223334555554432222222234679999999987763

>d1sjya_ d.113.1.1 (A:) Hypothetical protein DR1025 {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein DR1025
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.88  E-value=9.9e-23  Score=144.07  Aligned_cols=100  Identities=23%  Similarity=0.150  Sum_probs=72.2

Q ss_pred             eEEEEEEeCC-------CCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeeeEEeecccccccCCCCCCceEE
Q 031268           47 VLVLMISTPN-------RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRG  119 (162)
Q Consensus        47 ~~vLLv~r~~-------~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  119 (162)
                      ++|||++|+.       .+.|.||||++++|||+.+||+||++||||+++... ..++.+.+.....        .....
T Consensus        24 g~iLl~~r~~~~~~~~~~g~W~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~-~~i~~~~~~~~~~--------~~~~~   94 (158)
T d1sjya_          24 GDILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREACEETGLRVRPV-KFLGAYLGRFPDG--------VLILR   94 (158)
T ss_dssp             CCEEEEEESCC----CCCCCEECSEEECCTTSCHHHHHHHHHHHHHSCCEEEE-EEEEEEEEECTTS--------CEEEE
T ss_pred             CEEEEEEEecCCCCCCCCCcEECCceecCCCCCHHHHHHHHHHHHhCccceee-EEEEEEEEECCCC--------CEEEE
Confidence            5899999853       256999999999999999999999999999998776 5677766543321        12234


Q ss_pred             EEEEEEeccc--ccCCcccccceeEEeeHhHHhhhhcc
Q 031268          120 YMFALEVTEE--LESWPEQANYKRIWVSNNHFLWRKHS  155 (162)
Q Consensus       120 ~~f~~~~~~~--~~~~~~~~~~~~~W~~~~ea~~~~~~  155 (162)
                      ++|.+.....  ....++++..+++|++++|+.+++..
T Consensus        95 ~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~l~~~  132 (158)
T d1sjya_          95 HVWLAEPEPGQTLAPAFTDEIAEASFVSREDFAQLYAA  132 (158)
T ss_dssp             EEEEEEECSSCCCCCCCCSSEEEEEEECHHHHHHHHHT
T ss_pred             EEEEEEEcCCcccCCCCCcceEEEEEEEHHHHhhhhhC
Confidence            5555544332  22233445688999999999987543

>d2b0va1 d.113.1.1 (A:4-149) Hypothetical protein NE0184 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein NE0184
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.88  E-value=1.9e-22  Score=140.71  Aligned_cols=110  Identities=19%  Similarity=0.181  Sum_probs=77.5

Q ss_pred             ceeEEEEEEEeccCCcccccccccCceEEEEEEeCCC---CCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCee
Q 031268           21 LRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNR---DDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLG   97 (162)
Q Consensus        21 ~r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~~---~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~   97 (162)
                      ++.+|++|+.+.              ++|||+++...   +.|.||||++|+|||+.+||+||++||||+++... ..++
T Consensus         2 P~v~va~ii~~~--------------~k~Llv~r~~~~~~~~w~~PgG~ve~gEt~~~aa~RE~~EEtGl~~~~~-~~~~   66 (146)
T d2b0va1           2 PNVTVAAVIEQD--------------DKYLLVEEIPRGTAIKLNQPAGHLEPGESIIQACSREVLEETGHSFLPE-VLTG   66 (146)
T ss_dssp             CEEEEEEECEET--------------TEEEEEEECSSSSCCEEECSEEECCTTSCHHHHHHHHHHHHHSEEEEEE-EEEE
T ss_pred             CeEEEEEEEEeC--------------CEEEEEEEecCCCCCEEECCeeeECCCCCHHHHHHHHHHHhheeecccc-eEEE
Confidence            456777776543              38999998654   45999999999999999999999999999998766 4566


Q ss_pred             eEEeecccccccCCCCCCceEEEEEEEEeccccc-CCcccccceeEEeeHhHHhhh
Q 031268           98 EWEFRSKSRMNSCNSKEGGCRGYMFALEVTEELE-SWPEQANYKRIWVSNNHFLWR  152 (162)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~-~~~~~~~~~~~W~~~~ea~~~  152 (162)
                      .+.+......       .....++|.+....... ...+.+..+++|++++|+.++
T Consensus        67 ~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~  115 (146)
T d2b0va1          67 IYHWTCASNG-------TTYLRFTFSGQVVSFDPDRKLDTGIVRAAWFSIDEIRAK  115 (146)
T ss_dssp             EEEEEETTTT-------EEEEEEEEEEEEEEECTTSCCCTTEEEEEEEEHHHHHHT
T ss_pred             EEEEecCCCC-------eEEEEEEEEEEeecCCCCCCCCcceeEEEEeeHHHHhhC
Confidence            6555443221       12234455555433322 233445678999999999775

>d2azwa1 d.113.1.1 (A:2-148) Hypothetical protein EF1141 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein EF1141
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.87  E-value=1.6e-22  Score=141.32  Aligned_cols=121  Identities=24%  Similarity=0.217  Sum_probs=77.8

Q ss_pred             eeEEEEEEEeccCCcccccccccCceEEEEEEeCCCCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeeeEEe
Q 031268           22 RLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEF  101 (162)
Q Consensus        22 r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~~~~  101 (162)
                      |..+++|+++.++            ..+||+ ++..+.|.||||++|+|||+.+||+||++||||+++... ..++.+.+
T Consensus        17 r~~~~~vi~~~~~------------~~lll~-~~~~~~w~lPgG~ie~gEs~~~aa~RE~~EEtGl~~~~~-~~~~~~~~   82 (147)
T d2azwa1          17 RYAAYIIVSKPEN------------NTMVLV-QAPNGAYFLPGGEIEGTETKEEAIHREVLEELGISVEIG-CYLGEADE   82 (147)
T ss_dssp             CCEEEEECEEGGG------------TEEEEE-ECTTSCEECSEEECCTTCCHHHHHHHHHHHHHSEEEEEE-EEEEEEEE
T ss_pred             CCeEEEEEEECCC------------CEEEEE-EcCCCeEECcEeEeCCCCCHHHHHHHHHHhhhceeeeee-eEEEEEEE
Confidence            4677888887653            355555 455678999999999999999999999999999997765 45665543


Q ss_pred             ecccccccCCCCCCceEEEEEEEEecccccCCcccccceeEEeeHhHHhhhh-ccccccc
Q 031268          102 RSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWVSNNHFLWRK-HSNLVGM  160 (162)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~W~~~~ea~~~~-~~~l~~~  160 (162)
                      ........   .......++|.+...... ..+.++..+++|++++++.+++ ++..+.+
T Consensus        83 ~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~~~e~~~~~W~~~~e~~~~l~~~~~r~~  138 (147)
T d2azwa1          83 YFYSNHRQ---TAYYNPGYFYVANTWRQL-SEPLERTNTLHWVAPEEAVRLLKRGSHRWA  138 (147)
T ss_dssp             EEEETTTT---EEEEEEEEEEEEEEEEEC-SSCC-CCSEEEEECHHHHHHHBSCHHHHHH
T ss_pred             EeeeccCC---ceEEEEEEEEEEEecccc-CCCCccceEEEEEEHHHHHHHcCChhHHHH
Confidence            32211100   001123345555443332 2333445789999999998864 4444433

>d1jkna_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Narrow-leaved blue lupine (Lupinus angustifolius) [TaxId: 3871]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Narrow-leaved blue lupine (Lupinus angustifolius) [TaxId: 3871]

Probab=99.87  E-value=9.8e-23  Score=145.62  Aligned_cols=60  Identities=27%  Similarity=0.327  Sum_probs=52.9

Q ss_pred             cCceeEEEEEEEeccCCcccccccccCceEEEEEEeCCC-CCeeeCCCccCCCCCHHHHHHHHHHHHhCccccc
Q 031268           19 DQLRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNR-DDLVFPKGGWEDDETVSEAACREALEEAGVRGLL   91 (162)
Q Consensus        19 ~~~r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~~-~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~   91 (162)
                      +++|..||+|+++.+             ++|||++|.+. +.|.||||+||.|||+++||+||++||||+.+..
T Consensus        11 ~~yR~~Vg~vI~n~~-------------~~vLL~kR~~~~g~W~~PgG~ve~gEt~~~Aa~REl~EEtGl~~~~   71 (165)
T d1jkna_          11 EGYRRNVGICLMNND-------------KKIFAASRLDIPDAWQMPQGGIDEGEDPRNAAIRELREETGVTSAE   71 (165)
T ss_dssp             SSEEEEEEEEEECTT-------------SCEEEEEESSSTTCEECCEECCCTTCCHHHHHHHHHHHHTCCCSEE
T ss_pred             CCccccEEEEEEeCC-------------CEEEEEEEcCCCCcccCccceEcCCCChhHHHHHHHHHhhcccccc
Confidence            567899999998754             48999999764 7799999999999999999999999999998653

>d2a6ta2 d.113.1.7 (A:95-245) mRNA decapping enzyme Dcp2p catalytic domain {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: mRNA decapping enzyme-like
domain: mRNA decapping enzyme Dcp2p catalytic domain
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.87  E-value=7.9e-23  Score=144.04  Aligned_cols=108  Identities=19%  Similarity=0.152  Sum_probs=69.3

Q ss_pred             EEEEEEEeccCCcccccccccCceEEEEEEeCC-CCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeeeEEee
Q 031268           24 VAGCIPYKFEKNDENKNCKMEKKVLVLMISTPN-RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFR  102 (162)
Q Consensus        24 ~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~-~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~~~~~  102 (162)
                      ++|||+++.+.            .+|||+++.. .+.|.||||++|+|||+.+||+||++||||+++... .....+...
T Consensus         4 v~Gaii~~~~~------------~kvLLvk~~~~~~~W~lPgG~ie~gEs~~~aa~RE~~EEtGi~~~~~-~~~~~~~~~   70 (151)
T d2a6ta2           4 VRGAIMLDMSM------------QQCVLVKGWKASSGWGFPKGKIDKDESDVDCAIREVYEETGFDCSSR-INPNEFIDM   70 (151)
T ss_dssp             EEEEEEBCSSS------------SEEEEEEESSTTCCCBCSEEECCTTCCHHHHHHHHHHHHHCCCCTTT-CCTTCEEEE
T ss_pred             EEEEEEEECCC------------CEEEEEEEeCCCCCEECCcccccCCCCHHHHHHHHHHHHhCCCceee-eecceEEee
Confidence            67999998653            5899999854 567999999999999999999999999999987644 222222222


Q ss_pred             cccccccCCCCCCceEEEEEEEEecccc--cCCcccccceeEEeeHhHHhhhh
Q 031268          103 SKSRMNSCNSKEGGCRGYMFALEVTEEL--ESWPEQANYKRIWVSNNHFLWRK  153 (162)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~--~~~~~~~~~~~~W~~~~ea~~~~  153 (162)
                      ....         ....++|.+.+....  ...+..+..+++||+++++..+.
T Consensus        71 ~~~~---------~~~~~~~~~~~~~~~~~~~~~~~Ei~~~~W~~~~el~~~~  114 (151)
T d2a6ta2          71 TIRG---------QNVRLYIIPGISLDTRFESRTRKEISKIEWHNLMDLPTFK  114 (151)
T ss_dssp             EETT---------EEEEEEEECCCCTTCCCC------EEEEEEEEGGGSTTCC
T ss_pred             cccC---------ceEEEEEEEEeccCCcccccCCCccceEEEEEHHHhhhhh
Confidence            1111         011222222222221  12233456789999999988754

>d1ryaa_ d.113.1.5 (A:) GDP-mannose mannosyl hydrolase NudD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: GDP-mannose mannosyl hydrolase NudD
domain: GDP-mannose mannosyl hydrolase NudD
species: Escherichia coli [TaxId: 562]

Probab=99.87  E-value=1.1e-21  Score=139.06  Aligned_cols=124  Identities=19%  Similarity=0.210  Sum_probs=80.6

Q ss_pred             ceeEEEEEEEeccCCcccccccccCceEEEEEEeCC---CCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCC-CCe
Q 031268           21 LRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPN---RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDE-NPL   96 (162)
Q Consensus        21 ~r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~---~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~-~~l   96 (162)
                      +..+|++|+++.+             ++|||++|.+   .+.|.+|||++++|||+.+||+||++||||+++.... ..+
T Consensus        17 p~~~v~~vi~~~~-------------~~vLL~kR~~~~~~g~W~lPGG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~~~   83 (160)
T d1ryaa_          17 PLVSLDFIVENSR-------------GEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQFY   83 (160)
T ss_dssp             CEEEEEEEEECTT-------------SCEEEEEECSSSSTTSEECCEEECCTTCCHHHHHHHHHHHHHSSCCCGGGSEEE
T ss_pred             CEEEEEEEEEeCC-------------CeEEEEEeCCCCCCCcEecccccccCCCcHHHHHHHHHHHHhCceEeeeeeeEE
Confidence            4567777777643             4899999865   3679999999999999999999999999999876431 234


Q ss_pred             eeEEeecccccccCCCCCCceEEEEEEEEecccccCCcccccceeEEeeHhHHhhh--hccccc
Q 031268           97 GEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWVSNNHFLWR--KHSNLV  158 (162)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~W~~~~ea~~~--~~~~l~  158 (162)
                      +.+.+........ .....+....+|.+.........++.+..+++|++++|+..+  ++...+
T Consensus        84 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~E~~e~~W~~~~el~~~~~~~~~~k  146 (160)
T d1ryaa_          84 GVWQHFYDDNFSG-TDFTTHYVVLGFRFRVSEEELLLPDEQHDDYRWLTSDALLASDNVHANSR  146 (160)
T ss_dssp             EEEEEEESSBTTB-SSSCEEEEEEEEEEECCGGGCCCCSSSEEEEEEECHHHHHHCTTBCHHHH
T ss_pred             EEEEEeccccccC-CCcceEEEEEEEEEEecCCCccCCCcceEEEEEEEHHHhhcCccccHHHH
Confidence            4444332211100 001112233455555554443444555678999999999865  344443

>d1k2ea_ d.113.1.1 (A:) Hypothetical protein PAE3301 {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein PAE3301
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.87  E-value=2.6e-22  Score=140.52  Aligned_cols=106  Identities=18%  Similarity=0.050  Sum_probs=67.3

Q ss_pred             EEEEEEeCCCCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeeeEEeecccccccCCCCCCceEEEEEEEEec
Q 031268           48 LVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMFALEVT  127 (162)
Q Consensus        48 ~vLLv~r~~~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~  127 (162)
                      +|||++|+..+.|.||||++|+|||+.+||+||++||||+++... ..+..+.+.......     . ......+.....
T Consensus        13 kvLl~~r~~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~-~~~~~~~~~~~~~~~-----~-~~~~~~~~~~~~   85 (152)
T d1k2ea_          13 KVLLVKHKRLGVYIYPGGHVEHNETPIEAVKREFEEETGIVVEPI-GFTYGIIDENAVERP-----M-PLVILEEVVKYP   85 (152)
T ss_dssp             EEEEEECTTTCSEECSEEECCTTCCHHHHHHHHHHHHHSEEEEEC-CCCCCCBSSSEEECC-----C-CSEEEEEEEECS
T ss_pred             EEEEEEEcCCCeEECCeeEEeCCccHHHHHHHHHHHHHCCceeee-EEEEEEeccccccCc-----c-eEEEEEEEEecC
Confidence            899999988889999999999999999999999999999997665 233333222111100     0 011111111111


Q ss_pred             cc---------ccCCcccccceeEEeeHhHHhhh-hccccccc
Q 031268          128 EE---------LESWPEQANYKRIWVSNNHFLWR-KHSNLVGM  160 (162)
Q Consensus       128 ~~---------~~~~~~~~~~~~~W~~~~ea~~~-~~~~l~~~  160 (162)
                      ..         ....+..+..+++|++++++.++ ..++.+.+
T Consensus        86 ~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~  128 (152)
T d1k2ea_          86 EETHIHFDLIYLVKRVGGDLKNGEWIDVREIDRIETFPNVRKV  128 (152)
T ss_dssp             SCEEEEEEEEEEEEEEEECCCSCEEEEGGGGGGSCBSTTHHHH
T ss_pred             CCceEEEEEeEeeecCCCCcceEEEeEHHHHhhCCCCHHHHHH
Confidence            00         00122334578999999999887 44555544

>d1vk6a2 d.113.1.4 (A:126-256) NADH pyrophosphatase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: NADH pyrophosphatase
domain: NADH pyrophosphatase
species: Escherichia coli [TaxId: 562]

Probab=99.87  E-value=4.5e-22  Score=137.20  Aligned_cols=94  Identities=15%  Similarity=0.065  Sum_probs=68.7

Q ss_pred             eEEEEEEeCC--CCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeeeEEeecccccccCCCCCCceEEEEEEE
Q 031268           47 VLVLMISTPN--RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMFAL  124 (162)
Q Consensus        47 ~~vLLv~r~~--~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~  124 (162)
                      +++||+++++  .+.|.||||++|+|||+++||+||++||||+.+... ..++.+.+...           ....++|.+
T Consensus        14 ~~vLL~~~~~~~~g~w~lpGG~ve~GEt~~~aa~REl~EEtG~~~~~~-~~~~~~~~~~~-----------~~~~~~f~~   81 (131)
T d1vk6a2          14 DSILLAQHTRHRNGVHTVLAGFVEVGETLEQAVAREVMEESGIKVKNL-RYVTSQPWPFP-----------QSLMTAFMA   81 (131)
T ss_dssp             TEEEEEEETTTCSSCCBCEEEECCTTCCHHHHHHHHHHHHHCCEEEEE-EEEEEEEEETT-----------EEEEEEEEE
T ss_pred             CEEEEEEeccCCCCCEecccCCCcCCCcHHHHHHHHHHHHhCCcccce-eEEEEeccCcC-----------ceEEEEEEE
Confidence            3899998865  356999999999999999999999999999998765 45555444322           124456666


Q ss_pred             EecccccCCcccccceeEEeeHhHHhhh
Q 031268          125 EVTEELESWPEQANYKRIWVSNNHFLWR  152 (162)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~W~~~~ea~~~  152 (162)
                      ............+..+++||+++|+..+
T Consensus        82 ~~~~~~~~~~~~E~~~~~W~~~~el~~l  109 (131)
T d1vk6a2          82 EYDSGDIVIDPKELLEANWYRYDDLPLL  109 (131)
T ss_dssp             EEEECCCCCCTTTEEEEEEEETTSCCSC
T ss_pred             EEcCCcccCCCccEEEEEEEcHHHHhhC
Confidence            5543322333345689999999998776

>d1irya_ d.113.1.1 (A:) 7,8-dihydro-8-oxoguanine triphosphatase Hmth1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: 7,8-dihydro-8-oxoguanine triphosphatase Hmth1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1.8e-21  Score=137.83  Aligned_cols=108  Identities=17%  Similarity=0.120  Sum_probs=73.4

Q ss_pred             ceeEEEEEEEeccCCcccccccccCceEEEEEEeCC---CCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCee
Q 031268           21 LRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPN---RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLG   97 (162)
Q Consensus        21 ~r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~---~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~   97 (162)
                      .|+++.+++++.              ++|||++|+.   .+.|.+|||++|+|||+.+||+||++||||+++... ..++
T Consensus         4 ~r~~~~v~i~~~--------------~~vLL~~r~~~~~~g~W~lPGG~ve~gEt~~~aa~RE~~EEtGl~~~~~-~~~~   68 (156)
T d1irya_           4 SRLYTLVLVLQP--------------QRVLLGMKKRGFGAGRWNGFGGKVQEGETIEDGARRELQEESGLTVDAL-HKVG   68 (156)
T ss_dssp             CEEEEEECEECS--------------SEEEEEEESSSSSBTCEECBCCBCCTTCCHHHHHHHHHHHHHSCCBSCC-CEEE
T ss_pred             cEEEEEEEEEEC--------------CEEEEEEecCCCCCCEEECcEeEecCCCCHHHHHHHHHHHHHCCcccce-EEEE
Confidence            466666666653              3899999865   367999999999999999999999999999997765 4666


Q ss_pred             eEEeecccccccCCCCCCceEEEEEEEEecccccCCcccccceeEEeeHhHHhhh
Q 031268           98 EWEFRSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWVSNNHFLWR  152 (162)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~W~~~~ea~~~  152 (162)
                      .+.+......       ....+++|.+.  .......+.++.+.+||+++++..+
T Consensus        69 ~~~~~~~~~~-------~~~~~~~~~~~--~~~~~~~~~ee~~~~W~~~~~l~~~  114 (156)
T d1irya_          69 QIVFEFVGEP-------ELMDVHVFCTD--SIQGTPVESDEMRPCWFQLDQIPFK  114 (156)
T ss_dssp             EEEEEETTCS-------CEEEEEEECCC--CBCSCCCCCSSEEEEEEETTCCCST
T ss_pred             EEEEEcCCCC-------EEEEEEEEEEE--eecCcccCCchhheEEeEHHHCCcC
Confidence            6555443221       11233444332  2222222233467899999998764

>d1xsba_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=6.6e-22  Score=139.24  Aligned_cols=129  Identities=15%  Similarity=0.092  Sum_probs=81.5

Q ss_pred             eeEEEEEEEeccCCcccccccccCceEEEEEEeCC-CCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeeeEE
Q 031268           22 RLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPN-RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWE  100 (162)
Q Consensus        22 r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~-~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~~~  100 (162)
                      ..++|+|+|+..-    ...-..+..++||+++.. .+.|.||||++++|||+.+||+||++||||+..... ..++.+.
T Consensus         8 ~~~~g~i~f~~~~----~~~~~~~~~~~LL~~~~~~~~~W~lPgG~ie~gEt~~~aa~REl~EEtG~~~~~~-~~~~~~~   82 (153)
T d1xsba_           8 LRACGLIIFRRCL----IPKVDNNAIEFLLLQASDGIHHWTPPKGHVEPGEDDLETALRATQEEAGIEAGQL-TIIEGFK   82 (153)
T ss_dssp             EEEEEEEEEEECS----SCSSSSTTEEEEEEEESSTTCCEECCEEECCSSSCHHHHHHHHHHHTTSCCTTTE-EECSSCC
T ss_pred             hheeEEEEEeccc----cccccCCCCEEEEEEecCCCCcEECCeeecCCCCCHHHHHHHHHHHHhCCcccee-eeeccce
Confidence            4567999997220    000111468999998865 457999999999999999999999999999987543 2333221


Q ss_pred             eecccccccCCCCCCceEEEEEEEEeccc-ccCCcccccceeEEeeHhHHhhhh-ccccccc
Q 031268          101 FRSKSRMNSCNSKEGGCRGYMFALEVTEE-LESWPEQANYKRIWVSNNHFLWRK-HSNLVGM  160 (162)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~-~~~~~~~~~~~~~W~~~~ea~~~~-~~~l~~~  160 (162)
                      +......     ....+...+|.+..... ....+..+..+++|++++|+.+++ .+.++.+
T Consensus        83 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~i  139 (153)
T d1xsba_          83 RELNYVA-----RNKPKTVIYWLAEVKDYDVEIRLSHEHQAYRWLGLEEACQLAQFKEMKAA  139 (153)
T ss_dssp             EEEEEES-----SSCEEEEEEEEEEESCTTCCCCCCTTEEEEEEECHHHHHHHTCSHHHHHH
T ss_pred             eeecccc-----cCceeEEEEEEEEEeecccccCCCcceeEEEEEEHHHHHHhcCCHHHHHH
Confidence            1111100     11122344454444332 223344456899999999999985 4555544

>d2b06a1 d.113.1.1 (A:1-155) Hypothetical protein SP1235 (spr1115) {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein SP1235 (spr1115)
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.86  E-value=2.2e-21  Score=137.04  Aligned_cols=96  Identities=19%  Similarity=0.216  Sum_probs=67.9

Q ss_pred             ceEEEEEEeCCC----CCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeeeEEeecccccccCCCCCCceEEEE
Q 031268           46 KVLVLMISTPNR----DDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYM  121 (162)
Q Consensus        46 ~~~vLLv~r~~~----~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  121 (162)
                      +++|||++|...    +.|.||||++|+|||+++||+||++||||+.+... ..++.+.+.....        .....++
T Consensus        20 ~~~lLl~~R~~~~~~~~~w~~PGG~ve~gEs~~~aa~RE~~EEtGl~v~~~-~~~~~~~~~~~~~--------~~~~~~~   90 (155)
T d2b06a1          20 TQRVVMQYRAPENNRWSGYAFPGGHVENDEAFAESVIREIYEETGLTIQNP-QLVGIKNWPLDTG--------GRYIVIC   90 (155)
T ss_dssp             TTEEEEEEEC-----CCEEECCCCBCCTTSCHHHHHHHHHHHHHSEEEESC-EEEEEEEEECTTS--------CEEEEEE
T ss_pred             CCEEEEEEECCCCCCCCcEECceeEEcCCCCHHHHHHHHHHHhcCeeEeee-EEEEEEEeecCCC--------CeEEEEE
Confidence            468999988642    45999999999999999999999999999998766 4666665544321        1223445


Q ss_pred             EEEEecccccCCcccccceeEEeeHhHHhhh
Q 031268          122 FALEVTEELESWPEQANYKRIWVSNNHFLWR  152 (162)
Q Consensus       122 f~~~~~~~~~~~~~~~~~~~~W~~~~ea~~~  152 (162)
                      |.+....  ......+..+++|++++++.++
T Consensus        91 ~~~~~~~--~~~~~~e~~~~~W~~~~el~~l  119 (155)
T d2b06a1          91 YKATEFS--GTLQSSEEGEVSWVQKDQIPNL  119 (155)
T ss_dssp             EEECEEE--ECCCCBTTBEEEEEEGGGGGGS
T ss_pred             EEEEecC--CccCCCchheEEEEEHHHhccC
Confidence            5543222  1222334578999999999876

>d1puna_ d.113.1.1 (A:) Nucleoside triphosphate pyrophosphorylase (MutT) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Nucleoside triphosphate pyrophosphorylase (MutT)
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=2.8e-21  Score=132.41  Aligned_cols=94  Identities=20%  Similarity=0.175  Sum_probs=67.8

Q ss_pred             eEEEEEEeCC----CCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeeeEEeecccccccCCCCCCceEEEEE
Q 031268           47 VLVLMISTPN----RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMF  122 (162)
Q Consensus        47 ~~vLLv~r~~----~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f  122 (162)
                      ++|||++|..    .+.|+||||++|+|||+.+||+||++||||+.+... ..++.+.+.....         ....++|
T Consensus        16 ~~vLl~~R~~~~~~~g~W~~PgG~ve~gEs~~~a~~RE~~EE~gl~~~~~-~~~~~~~~~~~~~---------~~~~~~~   85 (129)
T d1puna_          16 NEIFITRRAADAHMANKLEFPGGKIEMGETPEQAVVRELQEEVGITPQHF-SLFEKLEYEFPDR---------HITLWFW   85 (129)
T ss_dssp             SCEEEBCCCSSCSCTTCCBCSCCSCTTTSCTTHHHHHHHHHTTCSCCCCC-CCSEEEEEECSSE---------EEEEEEE
T ss_pred             CEEEEEEecCCCCCCCcEECCcceecCCCchhHHHHHHHHHHhCCccccc-eeeeEEeeccccc---------ceeEEEE
Confidence            4899998854    267999999999999999999999999999998766 4677666544321         2244556


Q ss_pred             EEEecccccCCcccccceeEEeeHhHHhhh
Q 031268          123 ALEVTEELESWPEQANYKRIWVSNNHFLWR  152 (162)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~W~~~~ea~~~  152 (162)
                      .+......  ....++.+++|++++++.+.
T Consensus        86 ~~~~~~~~--~~~~E~~~~~W~~~~el~~~  113 (129)
T d1puna_          86 LVERWEGE--PWGKEGQPGEWMSLVGLNAD  113 (129)
T ss_dssp             ECCCCSSC--CCTTSSSCCEEECGGGCCTT
T ss_pred             EEeeccCc--CCCCccceEEEEEHHHcccC
Confidence            55432211  11233568999999998764

>d1v8ya_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Thermus thermophilus [TaxId: 274]

Probab=99.83  E-value=1.6e-20  Score=133.30  Aligned_cols=108  Identities=24%  Similarity=0.222  Sum_probs=70.9

Q ss_pred             eEEEEEEEeccCCcccccccccCceEEEEEEeCC----CCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeee
Q 031268           23 LVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPN----RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGE   98 (162)
Q Consensus        23 ~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~----~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~   98 (162)
                      .+|++|++++              ++|||+++.+    ...|+||||++|+|||+++||+||++||||+.+...  .++.
T Consensus        25 ~aV~vl~~~~--------------~~vlLv~q~R~~~~~~~~elP~G~ve~gE~~~~aA~REl~EEtG~~~~~~--~l~~   88 (158)
T d1v8ya_          25 PAVAVIALRE--------------GRMLFVRQMRPAVGLAPLEIPAGLIEPGEDPLEAARRELAEQTGLSGDLT--YLFS   88 (158)
T ss_dssp             CEEEEEEEET--------------TEEEEEECCBTTTTBCCBBCSEEECCTTCCHHHHHHHHHHHHHSEEEEEE--EEEE
T ss_pred             CEEEEEEEEC--------------CEEEEEEeeecCCCCceEecchhhccccCCHHHHHHHHHHhhcCCcceee--eecc
Confidence            4677777753              3799998743    346999999999999999999999999999987643  4554


Q ss_pred             EEeecccccccCCCCCCceEEEEEEEEeccccc-CCcccccceeEEeeHhHHhhhhcc
Q 031268           99 WEFRSKSRMNSCNSKEGGCRGYMFALEVTEELE-SWPEQANYKRIWVSNNHFLWRKHS  155 (162)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~-~~~~~~~~~~~W~~~~ea~~~~~~  155 (162)
                      +. .....        .....++|.+....... ...+.+..++.|++++|+.+++.+
T Consensus        89 ~~-~~~g~--------~~~~~~~f~a~~~~~~~~~~d~~E~~ev~w~~~~e~~~~i~~  137 (158)
T d1v8ya_          89 YF-VSPGF--------TDEKTHVFLAENLKEVEAHPDEDEAIEVVWMRPEEALERHQR  137 (158)
T ss_dssp             EE-SCTTT--------BCCEEEEEEEEEEEECC--------CEEEEECHHHHHHHHHT
T ss_pred             ee-cCCCc--------ceEEEEEEEEccccccccCCCCCeeEEEEEEEHHHHHHHHHC
Confidence            42 22111        11245666554332222 222334568999999999998543

>d2fmla2 d.113.1.6 (A:3-204) Hypothetical protein EF2700, N-terminal domain {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: BT0354 N-terminal domain-like
domain: Hypothetical protein EF2700, N-terminal domain
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.83  E-value=3.4e-20  Score=136.49  Aligned_cols=117  Identities=17%  Similarity=0.218  Sum_probs=78.9

Q ss_pred             CceeEEEEEEEeccCCcccccccccCceEEEEEEeCC---CCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCC-CC
Q 031268           20 QLRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPN---RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDE-NP   95 (162)
Q Consensus        20 ~~r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~---~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~-~~   95 (162)
                      .+..+|++|++..+..        .+..+|||++|..   .|.|.||||+|++|||+.+||+||++||||+.+.... ..
T Consensus        35 ~P~v~vd~vi~~~~~~--------~~~l~VLLv~R~~~p~~g~W~lPGG~ve~gEs~~eaa~REl~EEtGl~~~~~~l~~  106 (202)
T d2fmla2          35 KPSLTVDMVLLCYNKE--------ADQLKVLLIQRKGHPFRNSWALPGGFVNRNESTEDSVLRETKEETGVVISQENIEQ  106 (202)
T ss_dssp             CCEEEEEEEEEEEETT--------TTEEEEEEEEECSSSSTTCEECCEEECCTTSCHHHHHHHHHHHHHCCCCCGGGEEE
T ss_pred             CCccEEEEEEEEEecC--------CCeeEEEEEEecCCCCCCcEECCEEeecCCCCHHHHhhhhhHhhcCeeeecceeee
Confidence            4467888888765431        1357999999975   3779999999999999999999999999999865431 12


Q ss_pred             eeeEEeecccccccCCCCCCceEEEEEEEEecccccCCcccccceeEEeeHhHHhhh
Q 031268           96 LGEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWVSNNHFLWR  152 (162)
Q Consensus        96 l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~W~~~~ea~~~  152 (162)
                      ++.|......       ........+|.+.+.... ..+.++..+++||+++++...
T Consensus       107 ~~~~~~~~r~-------~~~~~i~~~~~~~~~~~~-~~~~~e~~~~~Wf~ld~l~~~  155 (202)
T d2fmla2         107 LHSFSRPDRD-------PRGWVVTVSYLAFIGEEP-LIAGDDAKEVHWFNLERHGQH  155 (202)
T ss_dssp             EEEECCTTSS-------TTSSEEEEEEEEECCCCC-CCCCTTEEEEEEEEEEEETTE
T ss_pred             eeecccCCcc-------ccceEEEEEEEEEeCCCC-cCCCcceeeEEEEeHHHCcch
Confidence            3333322211       122334445555554432 233445678999999998764

>d2fkba1 d.113.1.2 (A:8-168) Hypothetical protein YfcD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Hypothetical protein YfcD
species: Escherichia coli [TaxId: 562]

Probab=99.82  E-value=7.4e-20  Score=130.00  Aligned_cols=111  Identities=20%  Similarity=0.173  Sum_probs=76.9

Q ss_pred             CceeEEEEEEEeccCCcccccccccCceEEEEEEeCC-----CCCeeeC-CCccCCCCCHHHHHHHHHHHHhCcccccCC
Q 031268           20 QLRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPN-----RDDLVFP-KGGWEDDETVSEAACREALEEAGVRGLLDE   93 (162)
Q Consensus        20 ~~r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~-----~~~W~lP-gG~ve~gEt~~eaa~REl~EEtGl~~~~~~   93 (162)
                      -.+.+|.+++++.+             ++|||.+|..     .+.|.+| ||++++|||+++||+||++|||||..... 
T Consensus        28 ~~h~~v~v~v~~~~-------------g~vLl~rR~~~~~~~pg~w~~~~GG~ie~gEs~~~aa~REl~EE~Gi~~~~~-   93 (161)
T d2fkba1          28 LRHRATYIVVHDGM-------------GKILVQRRTETKDFLPGMLDATAGGVVQADEQLLESARREAEEELGIAGVPF-   93 (161)
T ss_dssp             CCEEEEEEEEECSS-------------SCEEEEEECSSCSSSTTCEESSBCCBCBTTCCHHHHHHHHHHHHHCCBSCCC-
T ss_pred             CcEeEEEEEEEeCC-------------CCEEEEEecCccccccccccccccccccccCcHHHHHHHHHHHHhCCcccee-
Confidence            34556666666543             5899998853     2679876 99999999999999999999999987555 


Q ss_pred             CCeeeEEeecccccccCCCCCCceEEEEEEEEecccccCCcccccceeEEeeHhHHhhhhc
Q 031268           94 NPLGEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWVSNNHFLWRKH  154 (162)
Q Consensus        94 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~W~~~~ea~~~~~  154 (162)
                      ..++.+.+.....         ....++|.+...+... ....+..+++|++++|+.++..
T Consensus        94 ~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~-~~~~Ev~~~~w~~~~el~~~~~  144 (161)
T d2fkba1          94 AEHGQFYFEDKNC---------RVWGALFSCVSHGPFA-LQEDEVSEVCWLTPEEITARCD  144 (161)
T ss_dssp             EEEEEEEEEETTE---------EEEEEEEEEECCCCCC-CCTTTEEEEEEECHHHHHTTGG
T ss_pred             EEEEEEEeecCCc---------EEEEEEEEEEECCCCc-CChhHeeEEEEEeHHHHhhhhh
Confidence            4566665544321         1234556555443322 2234567899999999988643

>d1hzta_ d.113.1.2 (A:) Isopentenyl diphosphate isomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Isopentenyl diphosphate isomerase
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=2.6e-20  Score=131.55  Aligned_cols=114  Identities=15%  Similarity=0.077  Sum_probs=72.6

Q ss_pred             eeEEEEEEEeccCCcccccccccCceEEEEEEeCC-----CCCeee-CCCccCCCCCHHHHHHHHHHHHhCcccccCCCC
Q 031268           22 RLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPN-----RDDLVF-PKGGWEDDETVSEAACREALEEAGVRGLLDENP   95 (162)
Q Consensus        22 r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~-----~~~W~l-PgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~   95 (162)
                      +.++++++++.+             ++|||++|..     .+.|.+ |||++++|||+.+||+||++||||+++......
T Consensus         2 Hra~~v~i~n~~-------------g~vLl~kRs~~k~~~pg~w~~~pgG~ve~gEt~~eaa~RE~~EE~Gi~~~~~~~~   68 (153)
T d1hzta_           2 HLAFSSWLFNAK-------------GQLLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAVIRRCRYELGVEITPPESI   68 (153)
T ss_dssp             EECEEEEEECTT-------------CCEEEEEECTTCSSSTTCEEESEEECCCTTCCHHHHHHHHHHHHHCCCBSCCEEE
T ss_pred             ceEEEEEEEECC-------------CEEEEEEeCCCCCCCCCceecccCceeecCCcHHHHHHHHHHHHcCceeecccce
Confidence            456777788765             4899998853     266876 999999999999999999999999987644211


Q ss_pred             eeeEEeecccccccCCCCCCceEEEEEEEEecccccCCcccccceeEEeeHhHHhhhh
Q 031268           96 LGEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWVSNNHFLWRK  153 (162)
Q Consensus        96 l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~W~~~~ea~~~~  153 (162)
                      ...+.|.......    .......++|.+......... +.+..+++|++++|+.+.+
T Consensus        69 ~~~~~y~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~Ev~~~~W~~~~el~~~i  121 (153)
T d1hzta_          69 YPDFRYRATDPSG----IVENEVCPVFAARTTSALQIN-DDEVMDYQWCDLADVLHGI  121 (153)
T ss_dssp             ETTCEEEEECTTS----CEEEEECCEEEEEBCSCCCCC-TTTEEEEEEECHHHHHHHH
T ss_pred             ecccccccccccc----ccceeEEEEEEEeeCCCccCC-hhheeEEEEeeHHHHHHHH
Confidence            2222222211110    000112234544444332222 2356899999999998764

>d2o5fa1 d.113.1.2 (A:7-168) Hypothetical protein DR0079 {Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Hypothetical protein DR0079
species: Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]

Probab=99.81  E-value=1.7e-19  Score=128.13  Aligned_cols=112  Identities=17%  Similarity=0.045  Sum_probs=76.3

Q ss_pred             ceeEEEEEEEeccCCcccccccccCceEEEEEEeCC-----CCCeeeC-CCccCCCCCHHHHHHHHHHHHhCcccccCCC
Q 031268           21 LRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPN-----RDDLVFP-KGGWEDDETVSEAACREALEEAGVRGLLDEN   94 (162)
Q Consensus        21 ~r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~-----~~~W~lP-gG~ve~gEt~~eaa~REl~EEtGl~~~~~~~   94 (162)
                      .+.+|++++++.+             +++||.+|..     .+.|.+| ||++++|||+.+||+||++||||+++... .
T Consensus        27 ~~~~v~~~v~~~~-------------g~~Ll~rR~~~k~~~pg~w~~~~GG~ve~gEs~~eaa~REl~EE~Gl~~~~~-~   92 (162)
T d2o5fa1          27 RVRVVNAFLRNSQ-------------GQLWIPRRSPSKSLFPNALDVSVGGAVQSGETYEEAFRREAREELNVEIDAL-S   92 (162)
T ss_dssp             GSEEEEEEEECTT-------------SCEEEEEC-------CCSBCCSEEEECBTTCCHHHHHHHHHHHHHCCCGGGS-E
T ss_pred             eEEEEEEEEEcCC-------------CCEEEEEeccCccccccccccccCCcccCCCChhhhhhhhhhheeCcceeeE-E
Confidence            4567777777654             4788887743     2679777 99999999999999999999999998765 3


Q ss_pred             CeeeEEeecccccccCCCCCCceEEEEEEEEecccccCCcccccceeEEeeHhHHhhhhc
Q 031268           95 PLGEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWVSNNHFLWRKH  154 (162)
Q Consensus        95 ~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~W~~~~ea~~~~~  154 (162)
                      .+..+.+.....       ......++|.+....... ....+..+++|++++|+.+++.
T Consensus        93 ~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~-~~~~Ev~~~~W~~~eel~~~~~  144 (162)
T d2o5fa1          93 WRPLASFSPFQT-------TLSSFMCVYELRSDATPI-FNPNDISGGEWLTPEHLLARIA  144 (162)
T ss_dssp             EEEEEEECTTTS-------SCSSEEEEEEEECSSCCC-CCTTTCSEEEEECHHHHHHHHH
T ss_pred             EEEEEEeccccc-------cceEEEEEEEEecCCCcc-CChhHeeEEEEeeHHHHHHHHH
Confidence            444444432211       112345666666544322 2233457899999999998754

>d1mqea_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.81  E-value=3.7e-20  Score=136.27  Aligned_cols=111  Identities=15%  Similarity=0.063  Sum_probs=72.0

Q ss_pred             eEEEEEEEeccCCcccccccccCceEEEEEEeCCC----CCeeeCCCccC-CCCCHHHHHHHHHHHHhCcccccCCCCee
Q 031268           23 LVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNR----DDLVFPKGGWE-DDETVSEAACREALEEAGVRGLLDENPLG   97 (162)
Q Consensus        23 ~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~~----~~W~lPgG~ve-~gEt~~eaa~REl~EEtGl~~~~~~~~l~   97 (162)
                      -+|+++++..+             ++|||+++.+.    ..|+||+|+|| +|||+++||+||++||||+.+... ..++
T Consensus        39 ~~V~vl~~~~~-------------~~ilLvrq~R~~~~~~~welPaG~ie~~gE~~~~aA~REl~EETG~~~~~~-~~l~  104 (202)
T d1mqea_          39 GAVAIVAMDDN-------------GNIPMVYQYRHTYGRRLWELPAGLLDVAGEPPHLTAARELREEVGLQASTW-QVLV  104 (202)
T ss_dssp             CEEEEEECCTT-------------SEEEEEEEEETTTTEEEEECCEEECCSTTCCHHHHHHHHHHHHHCEEEEEE-EEEE
T ss_pred             CeEEEEEECCC-------------CEEEEEEecccccCceEEeccccccccCCCCHHHHHHHHHhhccccccccc-eEee
Confidence            35666777643             48999987432    24999999999 799999999999999999998766 4666


Q ss_pred             eEEeecccccccCCCCCCceEEEEEEEEeccc---ccCCcccccceeEEeeHhHHhhhhccc
Q 031268           98 EWEFRSKSRMNSCNSKEGGCRGYMFALEVTEE---LESWPEQANYKRIWVSNNHFLWRKHSN  156 (162)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~---~~~~~~~~~~~~~W~~~~ea~~~~~~~  156 (162)
                      .+.......         .+..++|.+.....   ....++++..++.|++++|+.+++.++
T Consensus       105 ~~~~~~g~~---------~~~~~~fla~~~~~~~~~~~~~eee~i~v~w~~~~e~~~~i~~G  157 (202)
T d1mqea_         105 DLDTAPGFS---------DESVRVYLATGLREVGRPEAHHEEADMTMGWYPIAEAARRVLRG  157 (202)
T ss_dssp             EECSCTTTB---------CCCEEEEEEEEEEECCC----------CEEEEEHHHHHHHHTTT
T ss_pred             eeeccCccC---------CcEEEEEEEEeccccCCCCCCCccceEEEEEEEHHHHHHHHHcC
Confidence            653222111         12445555543221   112223333579999999999987643

>d1vhza_ d.113.1.1 (A:) ADP compounds hydrolase NudE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP compounds hydrolase NudE
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=1.7e-19  Score=131.09  Aligned_cols=100  Identities=18%  Similarity=0.059  Sum_probs=68.6

Q ss_pred             eEEEEEEeCCC----CCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeeeEEeecccccccCCCCCCceEEEEE
Q 031268           47 VLVLMISTPNR----DDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMF  122 (162)
Q Consensus        47 ~~vLLv~r~~~----~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f  122 (162)
                      ++|||+++.+.    ..|+||||++|+||||++||+||++||||+.+... ..++.+.......         ....++|
T Consensus        59 ~~vlLvrq~R~~~~~~~~elP~G~ie~gE~p~~aA~REl~EEtG~~~~~~-~~l~~~~~~~g~~---------~~~~~~~  128 (186)
T d1vhza_          59 DHLILIREYAVGTESYELGFSKGLIDPGESVYEAANRELKEEVGFGANDL-TFLKKLSMAPSYF---------SSKMNIV  128 (186)
T ss_dssp             TEEEEEEEEETTTTEEEEECEEEECCTTCCHHHHHHHHHHHHHSEEEEEE-EEEEEEECCTTTC---------CCEEEEE
T ss_pred             CEEEEEEeeecCCCceEeecccccCCCCcCHHHHHHHHHHHHhccccccc-eecceeecccccc---------ceEEEEE
Confidence            37999987432    23999999999999999999999999999997765 4667653322111         1244555


Q ss_pred             EEEeccc-ccCCcccccceeEEeeHhHHhhhhccc
Q 031268          123 ALEVTEE-LESWPEQANYKRIWVSNNHFLWRKHSN  156 (162)
Q Consensus       123 ~~~~~~~-~~~~~~~~~~~~~W~~~~ea~~~~~~~  156 (162)
                      .+..... .....+.+..+..|++++|+.+++.++
T Consensus       129 ~a~~~~~~~~~~de~E~~~~~~~~~~e~~~~i~~g  163 (186)
T d1vhza_         129 VAQDLYPESLEGDEPEPLPQVRWPLAHMMDLLEDP  163 (186)
T ss_dssp             EEEEEEECCCCCCCSSCCCEEEEEGGGGGGGGGCT
T ss_pred             EEEecccccCCCCCCcEEEEEEEeHHHHHHHHHcC
Confidence            4433222 122233445789999999999986543

>d1g0sa_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Escherichia coli [TaxId: 562]

Probab=99.77  E-value=1.2e-18  Score=128.77  Aligned_cols=112  Identities=23%  Similarity=0.185  Sum_probs=77.8

Q ss_pred             eEEEEEEEeccCCcccccccccCceEEEEEEeCCC-------C--CeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCC
Q 031268           23 LVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNR-------D--DLVFPKGGWEDDETVSEAACREALEEAGVRGLLDE   93 (162)
Q Consensus        23 ~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~~-------~--~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~   93 (162)
                      .+|+++++..+            .++|+|+++.+.       +  .|+||+|.+|+||||++||+||+.||||+.+... 
T Consensus        58 ~~v~vl~~~~~------------~~~vlLvrQ~R~~~~~~~~~~~~lElPAG~id~gE~p~~aA~REL~EEtG~~~~~l-  124 (209)
T d1g0sa_          58 HAAVLLPFDPV------------RDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIVKRT-  124 (209)
T ss_dssp             CEEEEEEEETT------------TTEEEEEEEECGGGGGGSSCSEEEECEEEECCTTCCHHHHHHHHHHHHHCCCCCCE-
T ss_pred             CEEEEEEEEec------------CCeEEEEEEEeccccccCCCceEEeeceeecCCCcCHHHHHHHHHHhhhcccccce-
Confidence            46777777654            358999998431       2  3799999999999999999999999999997665 


Q ss_pred             CCeeeEEeecccccccCCCCCCceEEEEEEEEecccccC-----CcccccceeEEeeHhHHhhhhccc
Q 031268           94 NPLGEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEELES-----WPEQANYKRIWVSNNHFLWRKHSN  156 (162)
Q Consensus        94 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~-----~~~~~~~~~~W~~~~ea~~~~~~~  156 (162)
                      ..++.+. .+...        .....++|.+.+......     ..+.+..++.|++++|+.+++.++
T Consensus       125 ~~l~~~~-~spg~--------~~e~~~~f~a~~~~~~~~~~~~~~de~E~iev~~v~~~e~~~~i~~g  183 (209)
T d1g0sa_         125 KPVLSFL-ASPGG--------TSERSSIMVGEVDATTASGIHGLADENEDIRVHVVSREQAYQWVEEG  183 (209)
T ss_dssp             EEEEEEE-SCTTT--------BCCEEEEEEEECCGGGCC--------CCSCEEEEEEHHHHHHHHHTT
T ss_pred             eeccccc-cCCcc--------cCCceEEEEEEEecccccCCCCCCCCCceeEEEEEeHHHHHHHHHcC
Confidence            4677653 22211        123677787765432211     122334679999999999987553

>d1nqza_ d.113.1.1 (A:) Coenzyme A pyrophosphatase {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Coenzyme A pyrophosphatase
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.77  E-value=1.1e-18  Score=126.93  Aligned_cols=112  Identities=21%  Similarity=0.153  Sum_probs=76.6

Q ss_pred             CceeEEEEEEEeccCCcccccccccCceEEEEEEeCC-----CCCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCC
Q 031268           20 QLRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPN-----RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDEN   94 (162)
Q Consensus        20 ~~r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~-----~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~   94 (162)
                      ..|.++..|++..++           +.+|||++|..     .|.|+||||++|+|||+.+||+||++||||+..... .
T Consensus        29 ~~r~aaVlv~~~~~~-----------~~~vll~kR~~~l~~h~G~~~fPGG~~e~~E~~~~aAlRE~~EE~Gl~~~~~-~   96 (187)
T d1nqza_          29 HYRRAAVLVALTREA-----------DPRVLLTVRSSELPTHKGQIAFPGGSLDAGETPTQAALREAQEEVALDPAAV-T   96 (187)
T ss_dssp             -CEEEEEEEEEESSS-----------SCBBCEEEEC------CCCEECSEEECCTTCCHHHHHHHHHHHHHCCCGGGC-E
T ss_pred             CCCccEEEEEEEECC-----------CCEEEEEEcCCCCCCCCCeEeCCccccccCCchhHHHHHHHHHhhcccccee-E
Confidence            456666666665443           57899999863     367999999999999999999999999999997766 5


Q ss_pred             CeeeEEeecccccccCCCCCCceEEEEEEEEeccc-c-cCCcccccceeEEeeHhHHhhh
Q 031268           95 PLGEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEE-L-ESWPEQANYKRIWVSNNHFLWR  152 (162)
Q Consensus        95 ~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~-~-~~~~~~~~~~~~W~~~~ea~~~  152 (162)
                      .+|.+.......         ...++.|.+.+... . ....+.+..++.|++++++...
T Consensus        97 ~lg~l~~~~~~~---------~~~V~p~v~~l~~~~~~~~~~~~EV~~v~~vpl~~L~~~  147 (187)
T d1nqza_          97 LLGELDDVFTPV---------GFHVTPVLGRIAPEALDTLRVTPEVAQIITPTLAELRAV  147 (187)
T ss_dssp             EEEECCCEEETT---------TEEEEEEEEEECGGGGGGCCCCTTEEEEECCBHHHHHHS
T ss_pred             Eeecccceeecc---------ccEEEEEEEEECCccccccccCCcceEEEeccHHHHhcC
Confidence            677654322211         12444454444322 1 2223345578999999998764

>d1q33a_ d.113.1.1 (A:) NUDT9 (mitochondrial ADP-ribose pyrophosphatase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: NUDT9 (mitochondrial ADP-ribose pyrophosphatase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=5e-16  Score=119.69  Aligned_cols=72  Identities=17%  Similarity=0.085  Sum_probs=55.3

Q ss_pred             CceeEEEEEEEeccCC--cccccc--cccCceEEEEEEeCCCCCeeeCCCccCCCCCHHHHHHHHHHHHhCccccc
Q 031268           20 QLRLVAGCIPYKFEKN--DENKNC--KMEKKVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVRGLL   91 (162)
Q Consensus        20 ~~r~~v~~i~~~~~~~--~~~~~~--~~~~~~~vLLv~r~~~~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~   91 (162)
                      |+.+++..|+-|...+  +.....  +-.+-.+||||+|++.+.|.||||+||+|||+.+||+||+.||||+.+..
T Consensus       108 GpNhAadpivTR~~r~~~g~~~~~~~~g~~~LqvLlIkR~d~g~WaLPGG~Vd~GEs~~~Aa~REl~EETGl~~~~  183 (292)
T d1q33a_         108 GPNHAADPIITRWKRDSSGNKIMHPVSGKHILQFVAIKRKDCGEWAIPGGMVDPGEKISATLKREFGEEALNSLQK  183 (292)
T ss_dssp             EEEEEEEEEEEEECBCTTSCBCBCTTTCSBCEEEEEEECTTTCSEECCCEECCTTCCHHHHHHHHHHHHHSCGGGS
T ss_pred             CccccccEEEecccccCCCCeEEecCCCCceeEEEEEEecCCCcEeCCcccCCCCCCHHHHHHHHHHHHhCccccc
Confidence            5568999999874211  110111  11223799999999999999999999999999999999999999998654

>d1viua_ d.113.1.1 (A:) ADP-ribose pyrophosphatase homologue YffH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase homologue YffH
species: Escherichia coli [TaxId: 562]

Probab=99.66  E-value=3.1e-16  Score=113.92  Aligned_cols=111  Identities=16%  Similarity=0.062  Sum_probs=75.5

Q ss_pred             eEEEEEEEeccCCcccccccccCceEEEEEEeCC--------CC--CeeeCCCccCCCCCHHHHHHHHHHHHhCcccccC
Q 031268           23 LVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPN--------RD--DLVFPKGGWEDDETVSEAACREALEEAGVRGLLD   92 (162)
Q Consensus        23 ~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~--------~~--~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~   92 (162)
                      .+|++|++...+            ++|||+++.+        .+  .|++|||.+| ||+|++||+||+.||||+.+...
T Consensus        44 ~aV~Vl~~~~~~------------~~vllvrQ~R~~v~~~~~~~~~~~e~paG~~d-~e~p~~aA~REL~EEtG~~~~~~  110 (189)
T d1viua_          44 NGATILLYNTKK------------KTVVLIRQFRVATWVNGNESGQLIESCAGLLD-NDEPEVCIRKEAIEETGYEVGEV  110 (189)
T ss_dssp             CEEEEEEEETTT------------TEEEEEEEECHHHHTTTCSSCEEEECEEEECT-TSCHHHHHHHHHHHHHSCCCCCC
T ss_pred             CEEEEEEEEcCC------------CEEEEEEeeccceeeccCCCcceecCcEEecC-CCCHHHHHHHHHHHhhCCcceEE
Confidence            477788886543            4899999842        12  2688999887 67789999999999999997766


Q ss_pred             CCCeeeEEeecccccccCCCCCCceEEEEEEEEeccccc----CCcccccceeEEeeHhHHhhhhccc
Q 031268           93 ENPLGEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEELE----SWPEQANYKRIWVSNNHFLWRKHSN  156 (162)
Q Consensus        93 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~----~~~~~~~~~~~W~~~~ea~~~~~~~  156 (162)
                       ..++.+ |.+....        ...+++|.+.......    ...+.+..++.|++++|+.+++.++
T Consensus       111 -~~lg~~-~~spG~~--------~e~~~~f~a~~~~~~~~~~~~~~e~E~i~v~~~~~~e~~~~i~~g  168 (189)
T d1viua_         111 -RKLFEL-YMSPGGV--------TELIHFFIAEYSDNQRANAGGGVEDEDIEVLELPFSQALEMIKTG  168 (189)
T ss_dssp             -EEEEEE-ESCTTTB--------CCEEEEEEEECCTTCC---------CCEEEEEEEHHHHHHHHHHT
T ss_pred             -EEccee-ecCcccc--------CceEEEEEEEECCcccccCCCCCCCccEEEEEEEHHHHHHHHHcC
Confidence             577766 3332211        2367778776543321    1123344689999999999986554

>d1rrqa2 d.113.1.3 (A:234-360) Adenine glycosylase MutY, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutY C-terminal domain-like
domain: Adenine glycosylase MutY, C-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.60  E-value=2.6e-15  Score=102.19  Aligned_cols=90  Identities=13%  Similarity=0.058  Sum_probs=61.0

Q ss_pred             eEEEEEEeCCC----CCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCCCCeeeEEeecccccccCCCCCCceEEEEE
Q 031268           47 VLVLMISTPNR----DDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMF  122 (162)
Q Consensus        47 ~~vLLv~r~~~----~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f  122 (162)
                      ++|||.+|...    |.|+||||.++.+|+ .+++.||++||+|+++... ..++.+....++.         ...+.+|
T Consensus        16 g~iLl~kR~~~~~~~GlWefP~g~~e~~~~-~e~l~rel~ee~gi~v~~~-~~l~~~~H~fsh~---------~~~~~~~   84 (127)
T d1rrqa2          16 GRVLIRKRDSTGLLANLWEFPSCETDGADG-KEKLEQMVGEQYGLQVELT-EPIVSFEHAFSHL---------VWQLTVF   84 (127)
T ss_dssp             SEEEEEECCSSSTTTTCEECCEEECTTTCC-HHHHHHTTC----CEEEEC-SCCEEEEEECSSE---------EEEEEEE
T ss_pred             CEEEEEECCCCCCCCCceecccccccCCCC-HHHHHHHhhhhcceEEEec-cccccceEecCCe---------EEEEEEE
Confidence            58999888653    569999999998777 7899999999999998776 4677765444322         1245566


Q ss_pred             EEEecccccCCcccccceeEEeeHhHHhhh
Q 031268          123 ALEVTEELESWPEQANYKRIWVSNNHFLWR  152 (162)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~W~~~~ea~~~  152 (162)
                      .+.....   .++  ..+++|++++++.++
T Consensus        85 ~~~~~~~---~~~--~~~~~Wv~~~el~~~  109 (127)
T d1rrqa2          85 PGRLVHG---GPV--EEPYRLAPEDELKAY  109 (127)
T ss_dssp             EEEEECC---SCC--CTTEEEEEGGGGGGS
T ss_pred             EEEECCC---Ccc--ccceEEeeHHHHhHC
Confidence            6654322   112  246899999999876

>d1u20a1 d.113.1.1 (A:14-209) U8 snorna-binding protein x29 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: U8 snorna-binding protein x29
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.58  E-value=5.1e-15  Score=107.80  Aligned_cols=71  Identities=17%  Similarity=0.124  Sum_probs=53.5

Q ss_pred             cCceeEEEEEEEeccCCcccccccccCceEEEEEEeCCCCCeeeCCCccCCCCC-HHHHHHHHHHHHhCcccccC
Q 031268           19 DQLRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDLVFPKGGWEDDET-VSEAACREALEEAGVRGLLD   92 (162)
Q Consensus        19 ~~~r~~v~~i~~~~~~~~~~~~~~~~~~~~vLLv~r~~~~~W~lPgG~ve~gEt-~~eaa~REl~EEtGl~~~~~   92 (162)
                      .++|+++.++++..++.  ....-.+.+..|||.+| ..|.|.||||++|+||| .++||.||+.||||+.+...
T Consensus        17 ~g~r~a~~~~~~~~~~~--~~~~~~~~~~~vl~~~r-~~g~~~~pgg~~~~~e~~~~~~~~re~~ee~g~~~~~~   88 (196)
T d1u20a1          17 EGYKHACHALLHAPSQA--KLFDRVPIRRVLLMMMR-FDGRLGFPGGFVDTRDISLEEGLKRELEEELGPALATV   88 (196)
T ss_dssp             SSCEEEEEEEEEEECCC--EETTTEECCEEEEEEEE-TTSCEECSEEEECTTTSCHHHHHHHHHHHHHCGGGGGC
T ss_pred             CCcceEEEEEEEcCCCc--eEEEEecCCcEEEEEEe-cCCcEECCccccCCCCCcHHHHHHHHHHHHhCccceeE
Confidence            67899999999876541  11111223456777665 45789999999999996 67899999999999997765

>d1x51a1 d.113.1.3 (A:8-149) A/G-specific adenine DNA glycosylase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutY C-terminal domain-like
domain: A/G-specific adenine DNA glycosylase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=1.5e-11  Score=84.31  Aligned_cols=96  Identities=17%  Similarity=0.198  Sum_probs=62.7

Q ss_pred             ceEEEEEEeCCC----CCeeeCCCccCCCCCHHHHHHHHHHHHhCcccccCC-CCeeeEEeecccccccCCCCCCceEEE
Q 031268           46 KVLVLMISTPNR----DDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDE-NPLGEWEFRSKSRMNSCNSKEGGCRGY  120 (162)
Q Consensus        46 ~~~vLLv~r~~~----~~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~  120 (162)
                      +++|||.+|...    |.|+||+|.++.+|+..++|.||..+|.+....... ..++.+.+...+         ....++
T Consensus        26 ~~~iLl~kR~~~g~l~GlWefP~~~~~~~e~~~~~~~~~~~~e~~~~~~~~~~~~~~~v~H~fsH---------~~~~~~   96 (142)
T d1x51a1          26 GAQILLVQRPNSGLLAGLWEFPSVTWEPSEQLQRKALLQELQRWAGPLPATHLRHLGEVVHTFSH---------IKLTYQ   96 (142)
T ss_dssp             SEEEEEEECCCCSTTCSCEECCEEECCSSHHHHHHHHHHHHHHHSCCCCSTTCEECCCBCCBCSS---------CEEEEE
T ss_pred             CCEEEEEECCCCCCCCcceeeeEeeccCCcchhHHHHHHHHHHhccCcceeeeeeeccceeccCC---------cceEEE
Confidence            479999999653    679999999999999999888777777665433221 223333222221         123466


Q ss_pred             EEEEEecccccCCcccccceeEEeeHhHHhhh
Q 031268          121 MFALEVTEELESWPEQANYKRIWVSNNHFLWR  152 (162)
Q Consensus       121 ~f~~~~~~~~~~~~~~~~~~~~W~~~~ea~~~  152 (162)
                      +|.+.+......  ..+..+.+|++++++.++
T Consensus        97 v~~~~~~~~~~~--~~~~~~~~W~~~~el~~~  126 (142)
T d1x51a1          97 VYGLALEGQTPV--TTVPPGARWLTQEEFHTA  126 (142)
T ss_dssp             EEEEECSSCCCC--CCCCTTEEEEEHHHHHHS
T ss_pred             EEEEEEeCCCcc--cccCccCEEeeHHHcccc
Confidence            777766543221  223467899999999876