Citrus Sinensis ID: 031271

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160--
Protein Sequence
MGANVSSLENPHGFIHAKTPLVMELQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQMKTEKRRN
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccHHHHHHHHHHHccccccHHccccccEEEEEEHHHHHHHcccccccccccccEEEEEEccccHHHHHHHHHHHHHHHHccccEEEEEEccccHHHHHHccccccccEEEEEEccEEEEEEEcccHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccEEEEccHHHHHHHHHHccccccccccccccEEEEEEEEEEEccHHHHHHHHccccEEEEEEEccccccHHHHHHHHHHHHHHcccEEEEEEEccccHHHHHHHcccccccEEEEEEcccEEEEEEcccHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mganvsslenphgfihaktpLVMELQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTaawcgpckfiepYVKDFAAMYTDVQFIKIDVdwlpeaakafdlidvlptfvlvkrgkeidrvvgakkdELQMKTEKRRN
Flexible Loop (DISEMBL)
mganvsslenphgfihAKTPLVMELQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPtfvlvkrgkeidrvvgakkdelqmktekrrn
Low Complexity Region (SEG)
MGANVSSLENPHGFIHAKTPLVMELQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQMKTEKRRN
Disordered region (IsUnstruct)
**************I*****LV********************RLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVV****************
Disordered Region (DISOPRED)
*****************************************************LIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQMKTEK***
Disordered Region (DISEMBL)
*********NPHGFIHAKTPLVMEL***************SDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDEL*********
Disordered Region (DISPRO)
*******************PLVM**QSKHQWRSQYEAS**SD******ETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQMKTEK*R*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGANVSSLENPHGFIHAKTPLVMELQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQMKTEKRRN
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	162	2.2.26 [Sep-21-2011]
Q9XIF4	129	Thioredoxin H7 OS=Arabido	yes	no	0.783	0.984	0.376	9e-24
Q38879	133	Thioredoxin H2 OS=Arabido	no	no	0.512	0.624	0.547	1e-22
Q851R5	134	Thioredoxin H2-2 OS=Oryza	yes	no	0.481	0.582	0.569	3e-20
Q9CAS1	148	Thioredoxin H8 OS=Arabido	no	no	0.771	0.844	0.335	7e-20
Q6Z4I3	138	Thioredoxin H2-1 OS=Oryza	no	no	0.734	0.862	0.333	2e-18
Q96419	116	Thioredoxin H-type OS=Fag	N/A	no	0.561	0.784	0.418	4e-17
P29449	126	Thioredoxin H-type 1 OS=N	N/A	no	0.469	0.603	0.519	8e-17
Q43636	118	Thioredoxin H-type OS=Ric	N/A	no	0.506	0.694	0.457	2e-16
A2YIW7	122	Thioredoxin H-type OS=Ory	N/A	no	0.469	0.622	0.467	3e-16
Q0D840	122	Thioredoxin H1 OS=Oryza s	no	no	0.469	0.622	0.467	3e-16

>sp|Q9XIF4|TRXH7_ARATH Thioredoxin H7 OS=Arabidopsis thaliana GN=TRX7 PE=2 SV=1

 Score =  109 bits (272), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 61/162 (37%), Positives = 89/162 (54%), Gaps = 35/162 (21%)

Query: 1   MGANVSSLENPHGFIH-AKTPLVMELQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCIN 59
           MG+NVSS+ + H  +       V+E++S+ QW+S +++ K S++L+              
Sbjct: 1   MGSNVSSVHDVHSSMEITSNGFVVEIESRRQWKSLFDSMKGSNKLL-------------- 46

Query: 60  EMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPE 119
                              VI +TA WCGPCK +EP V++ A+ Y++  F ++DVD L +
Sbjct: 47  -------------------VIDFTAVWCGPCKAMEPRVREIASKYSEAVFARVDVDRLMD 87

Query: 120 AAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQMKTEKRR 161
            A  +  I  LP FV VKRG+EIDRVVGAK DEL  K E+ R
Sbjct: 88  VAGTYRAI-TLPAFVFVKRGEEIDRVVGAKPDELVKKIEQHR 128

Probable thiol-disulfide oxidoreductase that may be involved in the redox regulation of a number of cytosolic enzymes.
Arabidopsis thaliana (taxid: 3702)

>sp|Q38879|TRXH2_ARATH Thioredoxin H2 OS=Arabidopsis thaliana GN=TRX2 PE=2 SV=2

 Score =  105 bits (261), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 46/84 (54%), Positives = 64/84 (76%), Gaps = 1/84 (1%)

Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVK 137
           +V+ ++A+WCGPC+ IEP +   A  + DV F+K+DVD LP+ AK F+ +  +PTFVLVK
Sbjct: 50  LVVDFSASWCGPCRMIEPAIHAMADKFNDVDFVKLDVDELPDVAKEFN-VTAMPTFVLVK 108

Query: 138 RGKEIDRVVGAKKDELQMKTEKRR 161
           RGKEI+R++GAKKDEL+ K  K R
Sbjct: 109 RGKEIERIIGAKKDELEKKVSKLR 132

Thiol-disulfide oxidoreductase probably involved in the redox regulation of a number of cytosolic enzymes. Possesses insulin disulfide bonds reducing activity.

Arabidopsis thaliana (taxid: 3702)

>sp|Q851R5|TRH22_ORYSJ Thioredoxin H2-2 OS=Oryza sativa subsp. japonica GN=Os03g0800700 PE=2 SV=1

 Score = 97.4 bits (241), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 45/79 (56%), Positives = 58/79 (73%), Gaps = 1/79 (1%)

Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVK 137
           +VI ++A WCGPC+FIEP  KD A  + D  F KIDVD L E A+ +  ++ +PTFVL+K
Sbjct: 47  IVIDFSATWCGPCRFIEPAFKDMAGRFADAVFFKIDVDELSEVARQWK-VEAMPTFVLIK 105

Query: 138 RGKEIDRVVGAKKDELQMK 156
            GKE+ RVVGAKKDEL+ K
Sbjct: 106 GGKEVSRVVGAKKDELERK 124

Probable thiol-disulfide oxidoreductase that may be involved in the redox regulation of a number of cytosolic enzymes.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9CAS1|TRXH8_ARATH Thioredoxin H8 OS=Arabidopsis thaliana GN=TRX8 PE=2 SV=1

 Score = 96.3 bits (238), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 59/176 (33%), Positives = 87/176 (49%), Gaps = 51/176 (28%)

Query: 1   MGANVSSLENPHGFIHAKT-----------------PLVMELQSKHQWRSQYEASKQSDR 43
           MGANVS+ +      H ++                 P ++E+++ +QW+S+  A K +++
Sbjct: 1   MGANVSTPDQRFQVTHFRSTKPWTPRPEIYPFKVNSPCIVEIKNMNQWKSRLNALKDTNK 60

Query: 44  LVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYVKDFAAM 103
           L+                                 VI +TA WCGPCK +EP +++ AA 
Sbjct: 61  LL---------------------------------VIEFTAKWCGPCKTLEPKLEELAAK 87

Query: 104 YTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQMKTEK 159
           YTDV+F+KIDVD L      F+L   LP  V +KRG+E+D VVG K DEL+ K  K
Sbjct: 88  YTDVEFVKIDVDVLMSVWMEFNL-STLPAIVFMKRGREVDMVVGVKVDELERKLNK 142

Probable thiol-disulfide oxidoreductase that may be involved in the redox regulation of a number of cytosolic enzymes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6Z4I3|TRH21_ORYSJ Thioredoxin H2-1 OS=Oryza sativa subsp. japonica GN=Os07g0190800 PE=2 SV=1

 Score = 92.0 bits (227), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 51/153 (33%), Positives = 77/153 (50%), Gaps = 34/153 (22%)

Query: 2   GANVSSLENPHGFIHAKTPLVMELQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEM 61
           GA  +S   P          V+ + SK +W   ++A K + +LV                
Sbjct: 3   GAFSTSKPKPAAGEEGGESAVVAVHSKAKWDELWDAHKNTTKLV---------------- 46

Query: 62  VLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAA 121
                            VI ++A+WCGPCK +EP  K+ A  +TDV F+K+DVD L E A
Sbjct: 47  -----------------VIDFSASWCGPCKMMEPVFKEMAGRFTDVAFLKVDVDELAEVA 89

Query: 122 KAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQ 154
           + +  ++ +PTFVL + G+E+ R+VGA KDEL+
Sbjct: 90  RTW-RVEAMPTFVLARGGEEVGRIVGADKDELE 121

Probable thiol-disulfide oxidoreductase that may be involved in the redox regulation of a number of cytosolic enzymes.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q96419|TRXH_FAGES Thioredoxin H-type OS=Fagopyrum esculentum PE=3 SV=1

 Score = 87.0 bits (214), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 41/98 (41%), Positives = 63/98 (64%), Gaps = 7/98 (7%)

Query: 59  NEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLP 118
           NE      D G ++      VI +TA+WCGPC+ I PYV + A  +  V F K+DVD L 
Sbjct: 17  NEKFQKAKDSGKLI------VIDFTASWCGPCRVITPYVSELAKKFPHVAFFKVDVDDLK 70

Query: 119 EAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQMK 156
           + A+ +  ++ +P+FV++K G+E++R+VGA+KDEL  K
Sbjct: 71  DVAEEYK-VEAMPSFVILKEGQEVERIVGARKDELLHK 107

Participates in various redox reactions through the reversible oxidation of the active center dithiol to a disulfide. The H form is known to activate a number of cytosolic enzymes.

Fagopyrum esculentum (taxid: 3617)

>sp|P29449|TRXH1_TOBAC Thioredoxin H-type 1 OS=Nicotiana tabacum PE=2 SV=1

 Score = 86.3 bits (212), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 40/77 (51%), Positives = 55/77 (71%), Gaps = 1/77 (1%)

Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVK 137
           VV+ +TA+WCGPC+FI P + D A     V F+K+DVD L   +  +  ++ +PTFV +K
Sbjct: 37  VVVDFTASWCGPCRFIAPILADIAKKMPHVIFLKVDVDELKTVSAEWS-VEAMPTFVFIK 95

Query: 138 RGKEIDRVVGAKKDELQ 154
            GKE+DRVVGAKK+ELQ
Sbjct: 96  DGKEVDRVVGAKKEELQ 112

Participates in various redox reactions through the reversible oxidation of the active center dithiol to a disulfide. The H form is known to activate a number of cytosolic enzymes.

Nicotiana tabacum (taxid: 4097)

>sp|Q43636|TRXH_RICCO Thioredoxin H-type OS=Ricinus communis PE=3 SV=1

 Score = 84.7 bits (208), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 38/83 (45%), Positives = 57/83 (68%), Gaps = 1/83 (1%)

Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVK 137
           +V+ +TA+WCGPC+FI P++ + A    +V F+K+DVD L   A  +  ++ +PTF+ +K
Sbjct: 31  IVVDFTASWCGPCRFIAPFLAELAKKLPNVTFLKVDVDELKTVAHEW-AVESMPTFMFLK 89

Query: 138 RGKEIDRVVGAKKDELQMKTEKR 160
            GK +D+VVGAKKDELQ    K 
Sbjct: 90  EGKIMDKVVGAKKDELQQTIAKH 112

Participates in various redox reactions through the reversible oxidation of the active center dithiol to a disulfide. The H form is known to activate a number of cytosolic enzymes.

Ricinus communis (taxid: 3988)

>sp|A2YIW7|TRXH_ORYSI Thioredoxin H-type OS=Oryza sativa subsp. indica GN=TRXH PE=1 SV=1

 Score = 84.3 bits (207), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 36/77 (46%), Positives = 56/77 (72%), Gaps = 1/77 (1%)

Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVK 137
           V+I +TA+WCGPC+FI P   ++A  +    F+K+DVD L E A+ ++ ++ +PTF+ +K
Sbjct: 31  VIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDVDELKEVAEKYN-VEAMPTFLFIK 89

Query: 138 RGKEIDRVVGAKKDELQ 154
            G E D+VVGA+KD+LQ
Sbjct: 90  DGAEADKVVGARKDDLQ 106

Participates in various redox reactions through the reversible oxidation of the active center dithiol to a disulfide. The H form is known to activate a number of cytosolic enzymes.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q0D840|TRXH1_ORYSJ Thioredoxin H1 OS=Oryza sativa subsp. japonica GN=TRXH PE=1 SV=1

 Score = 84.3 bits (207), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 36/77 (46%), Positives = 56/77 (72%), Gaps = 1/77 (1%)

Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVK 137
           V+I +TA+WCGPC+FI P   ++A  +    F+K+DVD L E A+ ++ ++ +PTF+ +K
Sbjct: 31  VIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDVDELKEVAEKYN-VEAMPTFLFIK 89

Query: 138 RGKEIDRVVGAKKDELQ 154
            G E D+VVGA+KD+LQ
Sbjct: 90  DGAEADKVVGARKDDLQ 106

Thiol-disulfide oxidoreductase involved in the redox regulation of MAP kinases. Under reducing conditions, inhibits MPK1 and MPK5 kinase activities. Mediates its own transport from cell-to-cell through plasmodesmata. Possesses insulin disulfide bonds reducing activity.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	162
297837565	128	thioredoxin H-type 7 [Arabidopsis lyrata	0.783	0.992	0.403	1e-24
351720668	135	thioredoxin [Glycine max] gi|46326970|gb	0.518	0.622	0.6	1e-23
449434841	131	PREDICTED: thioredoxin H2-like [Cucumis	0.771	0.954	0.372	2e-23
255630802	157	unknown [Glycine max]	0.518	0.535	0.6	2e-23
225452680	136	PREDICTED: thioredoxin H2 [Vitis vinifer	0.512	0.610	0.595	4e-23
255552830	133	Thioredoxin H-type, putative [Ricinus co	0.512	0.624	0.619	4e-23
224141341	131	thioredoxin h [Populus trichocarpa] gi|2	0.512	0.633	0.607	3e-22
15218902	129	thioredoxin H7 [Arabidopsis thaliana] gi	0.783	0.984	0.376	5e-22
121483549	111	thioredoxin [Brassica juncea]	0.518	0.756	0.576	5e-22
351734488	126	uncharacterized protein LOC100527691 [Gl	0.777	1.0	0.413	7e-22

>gi|297837565|ref|XP_002886664.1| thioredoxin H-type 7 [Arabidopsis lyrata subsp. lyrata] gi|297332505|gb|EFH62923.1| thioredoxin H-type 7 [Arabidopsis lyrata subsp. lyrata]

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 65/161 (40%), Positives = 90/161 (55%), Gaps = 34/161 (21%)

Query: 1   MGANVSSLENPHGFIHAKTPLVMELQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINE 60
           MG+NVSS+ + H  +     LV+E++S+ QW+S +++ K S++L+               
Sbjct: 1   MGSNVSSVHDVHSSMETNNGLVVEIESRRQWKSLFDSMKGSNKLL--------------- 45

Query: 61  MVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEA 120
                             VI +TAAWCGPCK +EP VK+ A+ Y +  F ++DVD L + 
Sbjct: 46  ------------------VIDFTAAWCGPCKAMEPRVKEIASKYPEAVFSRVDVDRLMDV 87

Query: 121 AKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQMKTEKRR 161
           A  +  I  LP FV VKRG+EIDRVVGAK DEL  K EK R
Sbjct: 88  AGTYRAI-TLPAFVFVKRGEEIDRVVGAKPDELVKKVEKHR 127

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351720668|ref|NP_001237440.1| thioredoxin [Glycine max] gi|46326970|gb|AAS88427.1| thioredoxin [Glycine max]

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 51/85 (60%), Positives = 68/85 (80%), Gaps = 1/85 (1%)

Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVK 137
           VVI ++A+WCGPCKFIEP +   +  +TDV F+KIDVD LP+ AK F+ ++ +PTFVL K
Sbjct: 50  VVIDFSASWCGPCKFIEPAIHAMSEKFTDVDFVKIDVDELPDVAKEFN-VEAMPTFVLCK 108

Query: 138 RGKEIDRVVGAKKDELQMKTEKRRN 162
           +GKE+D+VVGAKKDEL+ K EK R+
Sbjct: 109 KGKEVDKVVGAKKDELEKKIEKHRS 133

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449434841|ref|XP_004135204.1| PREDICTED: thioredoxin H2-like [Cucumis sativus] gi|449478475|ref|XP_004155328.1| PREDICTED: thioredoxin H2-like [Cucumis sativus]

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 60/161 (37%), Positives = 94/161 (58%), Gaps = 36/161 (22%)

Query: 1   MGAN--VSSLENPHGFIHAKTPLVMELQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCI 58
           MGA+  V   ++ +  I  K P ++E   K QW +++EA+K++++L+             
Sbjct: 1   MGASFTVPRSKSSNAMIQQKPPTIIECHDKAQWTARFEATKETNKLM------------- 47

Query: 59  NEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLP 118
                               VI +TAAWCGPC+ +EP +K+ AA + DV+F+KIDVD L 
Sbjct: 48  --------------------VIDFTAAWCGPCRHMEPTIKELAARFKDVEFVKIDVDELM 87

Query: 119 EAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQMKTEK 159
           + AK +  ++ +PTF+L+K GK ID+VVGA++D+LQ K EK
Sbjct: 88  DVAKEYG-VEAMPTFILIKNGKVIDKVVGARRDDLQKKIEK 127

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255630802|gb|ACU15762.1| unknown [Glycine max]

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 51/85 (60%), Positives = 68/85 (80%), Gaps = 1/85 (1%)

Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVK 137
           VVI ++A+WCGPCKFIEP +   +  +TDV F+KIDVD LP+ AK F+ ++ +PTFVL K
Sbjct: 72  VVIDFSASWCGPCKFIEPAIHAMSEKFTDVDFVKIDVDELPDVAKEFN-VEAMPTFVLCK 130

Query: 138 RGKEIDRVVGAKKDELQMKTEKRRN 162
           +GKE+D+VVGAKKDEL+ K EK R+
Sbjct: 131 KGKEVDKVVGAKKDELEKKIEKHRS 155

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452680|ref|XP_002282318.1| PREDICTED: thioredoxin H2 [Vitis vinifera] gi|147821566|emb|CAN70031.1| hypothetical protein VITISV_013686 [Vitis vinifera] gi|296087778|emb|CBI35034.3| unnamed protein product [Vitis vinifera] gi|452114370|gb|AGG09342.1| thioredoxin h4 [Vitis vinifera]

 Score =  112 bits (281), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 50/84 (59%), Positives = 66/84 (78%), Gaps = 1/84 (1%)

Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVK 137
           +VI + A WCGPCKF+EP VK  A+ YTDV F+KIDVD LP+ A+ F  +  +PTFVL+K
Sbjct: 49  MVIDFAATWCGPCKFMEPAVKSMASKYTDVDFVKIDVDELPDVAQEF-TVQAMPTFVLLK 107

Query: 138 RGKEIDRVVGAKKDELQMKTEKRR 161
           +GKE++RV+GAKKDEL+ K +K R
Sbjct: 108 KGKELERVIGAKKDELEKKIQKHR 131

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255552830|ref|XP_002517458.1| Thioredoxin H-type, putative [Ricinus communis] gi|223543469|gb|EEF45000.1| Thioredoxin H-type, putative [Ricinus communis]

 Score =  112 bits (281), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 52/84 (61%), Positives = 64/84 (76%), Gaps = 1/84 (1%)

Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVK 137
           +V+ + A+WCGPCKF+EP +K  A  Y+DVQF KIDVD LP  A+ F  +  +PTFVLVK
Sbjct: 49  MVVDFAASWCGPCKFMEPEIKSMATKYSDVQFSKIDVDELPGVAQEFG-VQAMPTFVLVK 107

Query: 138 RGKEIDRVVGAKKDELQMKTEKRR 161
           +GKE+DRVVGAKKDEL  K EK R
Sbjct: 108 KGKEVDRVVGAKKDELLKKIEKHR 131

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224141341|ref|XP_002324032.1| thioredoxin h [Populus trichocarpa] gi|222867034|gb|EEF04165.1| thioredoxin h [Populus trichocarpa]

 Score =  110 bits (274), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 51/84 (60%), Positives = 64/84 (76%), Gaps = 1/84 (1%)

Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVK 137
           +VI + A+WCGPCK +EP V   AA +TDVQF KIDVD LP+ A+ F  +  +PTFVLVK
Sbjct: 49  MVIDFAASWCGPCKHMEPAVHAMAAKFTDVQFAKIDVDELPDVAQEFG-VQAMPTFVLVK 107

Query: 138 RGKEIDRVVGAKKDELQMKTEKRR 161
           +G E+DRVVGA+K+ELQ K EK R
Sbjct: 108 KGNEVDRVVGAQKEELQRKIEKHR 131

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15218902|ref|NP_176182.1| thioredoxin H7 [Arabidopsis thaliana] gi|75338640|sp|Q9XIF4.1|TRXH7_ARATH RecName: Full=Thioredoxin H7; Short=AtTrxh7 gi|5080807|gb|AAD39316.1|AC007258_5 Putative thioredoxin [Arabidopsis thaliana] gi|27808584|gb|AAO24572.1| At1g59730 [Arabidopsis thaliana] gi|110736173|dbj|BAF00058.1| hypothetical protein [Arabidopsis thaliana] gi|332195489|gb|AEE33610.1| thioredoxin H7 [Arabidopsis thaliana]

 Score =  109 bits (272), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 61/162 (37%), Positives = 89/162 (54%), Gaps = 35/162 (21%)

Query: 1   MGANVSSLENPHGFIH-AKTPLVMELQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCIN 59
           MG+NVSS+ + H  +       V+E++S+ QW+S +++ K S++L+              
Sbjct: 1   MGSNVSSVHDVHSSMEITSNGFVVEIESRRQWKSLFDSMKGSNKLL-------------- 46

Query: 60  EMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPE 119
                              VI +TA WCGPCK +EP V++ A+ Y++  F ++DVD L +
Sbjct: 47  -------------------VIDFTAVWCGPCKAMEPRVREIASKYSEAVFARVDVDRLMD 87

Query: 120 AAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQMKTEKRR 161
            A  +  I  LP FV VKRG+EIDRVVGAK DEL  K E+ R
Sbjct: 88  VAGTYRAI-TLPAFVFVKRGEEIDRVVGAKPDELVKKIEQHR 128

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|121483549|gb|ABM54166.1| thioredoxin [Brassica juncea]

 Score =  108 bits (271), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 49/85 (57%), Positives = 64/85 (75%), Gaps = 1/85 (1%)

Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVK 137
           +VI ++A+WCGPCK  EP V+  A  +TDV F+K+DVD LPE AK FD +  +PTFVL+K
Sbjct: 26  LVIDFSASWCGPCKSFEPAVRHMAVKFTDVSFVKVDVDELPEVAKEFD-VTAMPTFVLMK 84

Query: 138 RGKEIDRVVGAKKDELQMKTEKRRN 162
            GKE+DR+VGAK+DEL+ K  K R 
Sbjct: 85  NGKEVDRIVGAKQDELENKVTKHRG 109

Source: Brassica juncea

Species: Brassica juncea

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351734488|ref|NP_001236052.1| uncharacterized protein LOC100527691 [Glycine max] gi|255632962|gb|ACU16835.1| unknown [Glycine max]

 Score =  108 bits (270), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 67/162 (41%), Positives = 97/162 (59%), Gaps = 36/162 (22%)

Query: 1   MGANVSSLENPHGFIHAKTPLVMELQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINE 60
           MGAN S+ E      H  + LV+   S  +W++ ++ASK++++L+               
Sbjct: 1   MGANFSTFEFVEKSSH--SSLVLTFHSTAKWKAHFDASKETNKLM--------------- 43

Query: 61  MVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEA 120
                             VI +TA WCGPCK+++P +K+FAA YTDV+FIKIDVD L E 
Sbjct: 44  ------------------VIDFTATWCGPCKYMDPIIKEFAAKYTDVEFIKIDVDELMEV 85

Query: 121 AKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQMKTEKRRN 162
           A+AF  +  +PTF+L+K+GK +++VVGAKK+ELQ   EKRRN
Sbjct: 86  AEAFQ-VQAMPTFILIKKGKVVEKVVGAKKEELQKLIEKRRN 126

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	162
TAIR|locus:2025971	129	TH7 "thioredoxin H-type 7" [Ar	0.512	0.643	0.535	2.8e-27
TAIR|locus:2178007	133	TRX2 "thioredoxin 2" [Arabidop	0.512	0.624	0.547	2.7e-25
TAIR|locus:2196784	148	TH8 "thioredoxin H-type 8" [Ar	0.5	0.547	0.536	4.9e-24
TAIR|locus:2080963	114	TRX1 "thioredoxin H-type 1" [A	0.5	0.710	0.487	2.4e-19
UNIPROTKB|Q0D840	122	TRXH "Thioredoxin H1" [Oryza s	0.469	0.622	0.467	3.2e-17
TAIR|locus:2159971	118	TRX3 "thioredoxin 3" [Arabidop	0.512	0.703	0.428	6e-17
TAIR|locus:2825451	118	TRX5 "thioredoxin H-type 5" [A	0.5	0.686	0.5	6.7e-17
TAIR|locus:2013169	119	ATTRX4 [Arabidopsis thaliana (	0.5	0.680	0.433	5.4e-15
TAIR|locus:2088560	380	TDX "tetraticopeptide domain-c	0.790	0.336	0.305	5.5e-15
SGD|S000000679	127	TRX3 "Mitochondrial thioredoxi	0.555	0.708	0.384	6.2e-14

TAIR|locus:2025971 TH7 "thioredoxin H-type 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 229 (85.7 bits), Expect = 2.8e-27, Sum P(2) = 2.8e-27
 Identities = 45/84 (53%), Positives = 59/84 (70%)

Query:    78 VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVK 137
             +VI +TA WCGPCK +EP V++ A+ Y++  F ++DVD L + A  +  I  LP FV VK
Sbjct:    46 LVIDFTAVWCGPCKAMEPRVREIASKYSEAVFARVDVDRLMDVAGTYRAI-TLPAFVFVK 104

Query:   138 RGKEIDRVVGAKKDELQMKTEKRR 161
             RG+EIDRVVGAK DEL  K E+ R
Sbjct:   105 RGEEIDRVVGAKPDELVKKIEQHR 128

GO:0005737 "cytoplasm" evidence=ISM

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0000280 "nuclear division" evidence=RCA

GO:0007000 "nucleolus organization" evidence=RCA

TAIR|locus:2178007 TRX2 "thioredoxin 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 260 (96.6 bits), Expect = 2.7e-25, Sum P(2) = 2.7e-25
 Identities = 46/84 (54%), Positives = 64/84 (76%)

Query:    78 VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVK 137
             +V+ ++A+WCGPC+ IEP +   A  + DV F+K+DVD LP+ AK F+ +  +PTFVLVK
Sbjct:    50 LVVDFSASWCGPCRMIEPAIHAMADKFNDVDFVKLDVDELPDVAKEFN-VTAMPTFVLVK 108

Query:   138 RGKEIDRVVGAKKDELQMKTEKRR 161
             RGKEI+R++GAKKDEL+ K  K R
Sbjct:   109 RGKEIERIIGAKKDELEKKVSKLR 132

GO:0005737 "cytoplasm" evidence=ISM

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0000103 "sulfate assimilation" evidence=IGI

GO:0005886 "plasma membrane" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005829 "cytosol" evidence=IDA;TAS

GO:0000280 "nuclear division" evidence=RCA

GO:0007000 "nucleolus organization" evidence=RCA

GO:0016671 "oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor" evidence=IDA

TAIR|locus:2196784 TH8 "thioredoxin H-type 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 229 (85.7 bits), Expect = 4.9e-24, Sum P(2) = 4.9e-24
 Identities = 44/82 (53%), Positives = 57/82 (69%)

Query:    78 VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVK 137
             +VI +TA WCGPCK +EP +++ AA YTDV+F+KIDVD L      F+L   LP  V +K
Sbjct:    62 LVIEFTAKWCGPCKTLEPKLEELAAKYTDVEFVKIDVDVLMSVWMEFNL-STLPAIVFMK 120

Query:   138 RGKEIDRVVGAKKDELQMKTEK 159
             RG+E+D VVG K DEL+ K  K
Sbjct:   121 RGREVDMVVGVKVDELERKLNK 142

GO:0005737 "cytoplasm" evidence=ISM

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0000280 "nuclear division" evidence=RCA

GO:0007000 "nucleolus organization" evidence=RCA

TAIR|locus:2080963 TRX1 "thioredoxin H-type 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 210 (79.0 bits), Expect = 2.4e-19, Sum P(2) = 2.4e-19
 Identities = 40/82 (48%), Positives = 54/82 (65%)

Query:    78 VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVK 137
             VV+ +TA+WCGPC+FI P+  D A    +V F+K+D D L   A  +  I  +PTF+ +K
Sbjct:    31 VVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKVDTDELKSVASDW-AIQAMPTFMFLK 89

Query:   138 RGKEIDRVVGAKKDELQMKTEK 159
              GK +D+VVGAKKDELQ    K
Sbjct:    90 EGKILDKVVGAKKDELQSTIAK 111

GO:0005737 "cytoplasm" evidence=ISM

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0008047 "enzyme activator activity" evidence=IDA

GO:0043085 "positive regulation of catalytic activity" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

GO:0016671 "oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor" evidence=IDA

UNIPROTKB|Q0D840 TRXH "Thioredoxin H1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 211 (79.3 bits), Expect = 3.2e-17, P = 3.2e-17
 Identities = 36/77 (46%), Positives = 56/77 (72%)

Query:    78 VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVK 137
             V+I +TA+WCGPC+FI P   ++A  +    F+K+DVD L E A+ ++ ++ +PTF+ +K
Sbjct:    31 VIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDVDELKEVAEKYN-VEAMPTFLFIK 89

Query:   138 RGKEIDRVVGAKKDELQ 154
              G E D+VVGA+KD+LQ
Sbjct:    90 DGAEADKVVGARKDDLQ 106

GO:0004857 "enzyme inhibitor activity" evidence=IDA

GO:0006979 "response to oxidative stress" evidence=IEP

GO:0009409 "response to cold" evidence=IEP

GO:0010497 "plasmodesmata-mediated intercellular transport" evidence=IDA

GO:0016671 "oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor" evidence=IDA;TAS

GO:0043086 "negative regulation of catalytic activity" evidence=IDA

TAIR|locus:2159971 TRX3 "thioredoxin 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 186 (70.5 bits), Expect = 6.0e-17, Sum P(2) = 6.0e-17
 Identities = 36/84 (42%), Positives = 51/84 (60%)

Query:    78 VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVK 137
             +VI +TA WC PC+FI P   D A  + DV F K+DVD L   A+ F  +  +PTF+ +K
Sbjct:    30 IVIDFTATWCPPCRFIAPVFADLAKKHLDVVFFKVDVDELNTVAEEFK-VQAMPTFIFMK 88

Query:   138 RGKEIDRVVGAKKDELQMKTEKRR 161
              G+  + VVGA K+E+    EK +
Sbjct:    89 EGEIKETVVGAAKEEIIANLEKHK 112

GO:0005737 "cytoplasm" evidence=ISM

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0042542 "response to hydrogen peroxide" evidence=IGI

GO:0005739 "mitochondrion" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0010188 "response to microbial phytotoxin" evidence=IMP

GO:0050832 "defense response to fungus" evidence=IMP

GO:0016020 "membrane" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0005829 "cytosol" evidence=IDA;TAS

GO:0006457 "protein folding" evidence=IDA

GO:0009408 "response to heat" evidence=IMP

GO:0010286 "heat acclimation" evidence=IMP

GO:0016671 "oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor" evidence=IDA

GO:0051259 "protein oligomerization" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0009734 "auxin mediated signaling pathway" evidence=RCA

TAIR|locus:2825451 TRX5 "thioredoxin H-type 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
 Identities = 41/82 (50%), Positives = 54/82 (65%)

Query:    78 VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVK 137
             +VI +TA+WC PC+FI P   + A  +T+V F KIDVD L   A+ F  ++ +PTFV +K
Sbjct:    30 IVIDFTASWCPPCRFIAPVFAEMAKKFTNVVFFKIDVDELQAVAQEFK-VEAMPTFVFMK 88

Query:   138 RGKEIDRVVGAKKDELQMKTEK 159
              G  IDRVVGA KDE+  K  K
Sbjct:    89 EGNIIDRVVGAAKDEINEKLMK 110

GO:0005737 "cytoplasm" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IEP

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0010188 "response to microbial phytotoxin" evidence=IMP

GO:0050832 "defense response to fungus" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

GO:0016671 "oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor" evidence=IDA

TAIR|locus:2013169 ATTRX4 [Arabidopsis thaliana (taxid:3702)]

 Score = 190 (71.9 bits), Expect = 5.4e-15, P = 5.4e-15
 Identities = 36/83 (43%), Positives = 53/83 (63%)

Query:    78 VVIYYTAAWCGPCKFIEPYVKDFAAMY-TDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLV 136
             +VI +TA+WC PC+ I P   D A  + +   F K+DVD L   AK F  ++ +PTFV +
Sbjct:    31 IVIDFTASWCPPCRMIAPIFNDLAKKFMSSAIFFKVDVDELQSVAKEFG-VEAMPTFVFI 89

Query:   137 KRGKEIDRVVGAKKDELQMKTEK 159
             K G+ +D++VGA K++LQ K  K
Sbjct:    90 KAGEVVDKLVGANKEDLQAKIVK 112

GO:0005737 "cytoplasm" evidence=ISM

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0005829 "cytosol" evidence=TAS

GO:0016671 "oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor" evidence=IDA

TAIR|locus:2088560 TDX "tetraticopeptide domain-containing thioredoxin" [Arabidopsis thaliana (taxid:3702)]

 Score = 195 (73.7 bits), Expect = 5.5e-15, P = 5.5e-15
 Identities = 41/134 (30%), Positives = 75/134 (55%)

Query:    24 ELQ-SKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYY 82
             ELQ ++ + R Q EA ++  +  + N+     I+  +E+                +++Y+
Sbjct:   244 ELQRAERERRKQQEAQEREAQAAL-NDGEVISIHSTSELEAKTKAAKKAS---RLLILYF 299

Query:    83 TAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEI 142
             TA WCGPC+++ P   + A  ++ V F+K+D+D   + A ++++  V PTF  ++ GKE+
Sbjct:   300 TATWCGPCRYMSPLYSNLATQHSRVVFLKVDIDKANDVAASWNISSV-PTFCFIRDGKEV 358

Query:   143 DRVVGAKKDELQMK 156
             D+VVGA K  L+ K
Sbjct:   359 DKVVGADKGSLEQK 372

GO:0005737 "cytoplasm" evidence=ISM

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0016671 "oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor" evidence=IDA

GO:0030544 "Hsp70 protein binding" evidence=IDA

GO:0006457 "protein folding" evidence=IDA

GO:0010286 "heat acclimation" evidence=IMP

GO:0051259 "protein oligomerization" evidence=IDA

SGD|S000000679 TRX3 "Mitochondrial thioredoxin" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
 Identities = 35/91 (38%), Positives = 56/91 (61%)

Query:    64 NINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKA 123
             N+ +  N++    K+VI + A WCGPCK ++P++      Y DV+F+K DVD  P+ AK 
Sbjct:    32 NLTEFRNLIKQNDKLVIDFYATWCGPCKMMQPHLTKLIQAYPDVRFVKCDVDESPDIAKE 91

Query:   124 FDLIDVLPTFVLVKRGKEIDRVVGAKKDELQ 154
              + +  +PTFVL K G+ I +++GA    L+
Sbjct:    92 CE-VTAMPTFVLGKDGQLIGKIIGANPTALE 121

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA;IDA

GO:0022900 "electron transport chain" evidence=IEA

GO:0015036 "disulfide oxidoreductase activity" evidence=IDA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0034599 "cellular response to oxidative stress" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	162
cd02947	93	cd02947, TRX_family, TRX family; composed of two g	3e-26
pfam00085	104	pfam00085, Thioredoxin, Thioredoxin	1e-16
TIGR01068	101	TIGR01068, thioredoxin, thioredoxin	1e-16
PTZ00051	98	PTZ00051, PTZ00051, thioredoxin; Provisional	2e-16
cd02984	97	cd02984, TRX_PICOT, TRX domain, PICOT (for PKC-int	9e-15
COG0526	127	COG0526, TrxA, Thiol-disulfide isomerase and thior	9e-10
PRK10996	139	PRK10996, PRK10996, thioredoxin 2; Provisional	1e-08
cd01659	69	cd01659, TRX_superfamily, Thioredoxin (TRX) superf	1e-07
COG3118	304	COG3118, COG3118, Thioredoxin domain-containing pr	2e-07
cd02956	96	cd02956, ybbN, ybbN protein family; ybbN is a hypo	5e-07
cd02949	97	cd02949, TRX_NTR, TRX domain, novel NADPH thioredo	7e-07
cd02989	113	cd02989, Phd_like_TxnDC9, Phosducin (Phd)-like fam	7e-07
cd02961	101	cd02961, PDI_a_family, Protein Disulfide Isomerase	1e-06
cd02966	116	cd02966, TlpA_like_family, TlpA-like family; compo	3e-06
PRK09381	109	PRK09381, trxA, thioredoxin; Provisional	6e-06
cd03011	123	cd03011, TlpA_like_ScsD_MtbDsbE, TlpA-like family,	1e-05
cd02957	113	cd02957, Phd_like, Phosducin (Phd)-like family; co	1e-05
cd02962	152	cd02962, TMX2, TMX2 family; composed of proteins s	3e-05
cd02948	102	cd02948, TRX_NDPK, TRX domain, TRX and NDP-kinase	3e-04
cd02985	103	cd02985, TRX_CDSP32, TRX family, chloroplastic dro	4e-04
cd02950	142	cd02950, TxlA, TRX-like protein A (TxlA) family; T	8e-04
cd02953	104	cd02953, DsbDgamma, DsbD gamma family; DsbD gamma	0.002
pfam13098	105	pfam13098, Thioredoxin_2, Thioredoxin-like domain	0.002
cd02995	104	cd02995, PDI_a_PDI_a'_C, PDIa family, C-terminal T	0.004

>gnl|CDD|239245 cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

 Score = 94.5 bits (236), Expect = 3e-26
 Identities = 38/78 (48%), Positives = 54/78 (69%), Gaps = 2/78 (2%)

Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVK 137
           VV+ + A WCGPCK I P +++ A  Y  V+F+K+DVD  PE A+ +  +  +PTF+  K
Sbjct: 13  VVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDENPELAEEYG-VRSIPTFLFFK 71

Query: 138 RGKEIDRVVGA-KKDELQ 154
            GKE+DRVVGA  K+EL+
Sbjct: 72  NGKEVDRVVGADPKEELE 89

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins. Length = 93

>gnl|CDD|215704 pfam00085, Thioredoxin, Thioredoxin

 Score = 70.7 bits (174), Expect = 1e-16
 Identities = 30/79 (37%), Positives = 43/79 (54%), Gaps = 3/79 (3%)

Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYT-DVQFIKIDVDWLPEAAKAFDLIDVLPTFVLV 136
           V++ + A WCGPCK + P  +  A  Y  DV+F K+D D  P+ A  +  +   PT    
Sbjct: 21  VLVDFYAPWCGPCKALAPEYEKLAQEYKDDVKFAKVDADENPDLASEYG-VRGFPTIKFF 79

Query: 137 KRGKEIDRVVGA-KKDELQ 154
           K GK++   VGA  KD+L 
Sbjct: 80  KNGKKVSDYVGARTKDDLV 98

Thioredoxins are small enzymes that participate in redox reactions, via the reversible oxidation of an active centre disulfide bond. Some members with only the active site are not separated from the noise. Length = 104

>gnl|CDD|200072 TIGR01068, thioredoxin, thioredoxin

 Score = 70.4 bits (173), Expect = 1e-16
 Identities = 34/79 (43%), Positives = 50/79 (63%), Gaps = 3/79 (3%)

Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMY-TDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLV 136
           V++ + A WCGPCK I P +++ A  Y   V+F+K++VD  P+ A  +  I  +PT +L 
Sbjct: 17  VLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYG-IRSIPTLLLF 75

Query: 137 KRGKEIDRVVGAK-KDELQ 154
           K GKE+DR VGA  K  L+
Sbjct: 76  KNGKEVDRSVGALPKAALK 94

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by This model. Any protein that hits once with a score greater than the second (per domain) trusted cutoff may be taken as thioredoxin [Energy metabolism, Electron transport]. Length = 101

>gnl|CDD|173347 PTZ00051, PTZ00051, thioredoxin; Provisional

 Score = 69.9 bits (171), Expect = 2e-16
 Identities = 30/77 (38%), Positives = 49/77 (63%), Gaps = 1/77 (1%)

Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVK 137
           V++ + A WCGPCK I P+ ++ +  YT + F+K+DVD L E A+  + I  +PTF + K
Sbjct: 21  VIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDELSEVAEKEN-ITSMPTFKVFK 79

Query: 138 RGKEIDRVVGAKKDELQ 154
            G  +D ++GA  + L+
Sbjct: 80  NGSVVDTLLGANDEALK 96

Length = 98

>gnl|CDD|239282 cd02984, TRX_PICOT, TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes

 Score = 65.4 bits (160), Expect = 9e-15
 Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 2/82 (2%)

Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAA-MYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLV 136
           +V+++ A W  PCK +    ++ A   +  V F+ I+ + LPE ++ F+ I  +PTFV  
Sbjct: 17  LVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFE-ITAVPTFVFF 75

Query: 137 KRGKEIDRVVGAKKDELQMKTE 158
           + G  +DRV GA   EL  K E
Sbjct: 76  RNGTIVDRVSGADPKELAKKVE 97

PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Length = 97

>gnl|CDD|223600 COG0526, TrxA, Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

 Score = 53.4 bits (127), Expect = 9e-10
 Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 3/80 (3%)

Query: 73  FWVLKVVIYYTAAWCGPCKFIEPYVKDFAAMY-TDVQFIKIDV-DWLPEAAKAF-DLIDV 129
                V++ + A WC PC+   P +++ A  Y  DV+ + ++V D  P+ A  F   +  
Sbjct: 30  LKGKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGVAVRS 89

Query: 130 LPTFVLVKRGKEIDRVVGAK 149
           +PT +L K GKE+DR+VG K
Sbjct: 90  IPTLLLFKDGKEVDRLVGGK 109

Length = 127

>gnl|CDD|182889 PRK10996, PRK10996, thioredoxin 2; Provisional

 Score = 50.5 bits (121), Expect = 1e-08
 Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 2/74 (2%)

Query: 76  LKVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFV 134
           L VVI + A WCGPC+   P  +D AA  +  V+F+K++ +   E +  F  I  +PT +
Sbjct: 53  LPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSARFR-IRSIPTIM 111

Query: 135 LVKRGKEIDRVVGA 148
           + K G+ +D + GA
Sbjct: 112 IFKNGQVVDMLNGA 125

Length = 139

>gnl|CDD|238829 cd01659, TRX_superfamily, Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold

 Score = 46.2 bits (109), Expect = 1e-07
 Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 2/66 (3%)

Query: 79  VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLP--EAAKAFDLIDVLPTFVLV 136
           ++ + A WC  C+ + P + + A +   V+F  +DVD  P  E       +  +PT V+ 
Sbjct: 1   LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVF 60

Query: 137 KRGKEI 142
             G  +
Sbjct: 61  GPGIGV 66

Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others. Length = 69

>gnl|CDD|225660 COG3118, COG3118, Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

 Score = 48.9 bits (117), Expect = 2e-07
 Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 2/76 (2%)

Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYT-DVQFIKIDVDWLPEAAKAFDLIDVLPTFVLV 136
           V++ + A WCGPCK + P ++  AA Y    +  K++ D  P  A  F  +  +PT    
Sbjct: 46  VLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFG-VQSIPTVYAF 104

Query: 137 KRGKEIDRVVGAKKDE 152
           K G+ +D   GA+ + 
Sbjct: 105 KDGQPVDGFQGAQPES 120

Length = 304

>gnl|CDD|239254 cd02956, ybbN, ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain

 Score = 45.3 bits (108), Expect = 5e-07
 Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 5/81 (6%)

Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFI--KIDVDWLPEAAKAFDLIDVLPTFVL 135
           VV+ + A    P K + P ++  A  Y   QF+  K++ D  P+ A+ F  +  LPT  L
Sbjct: 15  VVVDFWAPRSPPSKELLPLLERLAEEYQG-QFVLAKVNCDAQPQIAQQFG-VQALPTVYL 72

Query: 136 VKRGKEIDRVVGAKKDELQMK 156
              G+ +D   GA + E Q++
Sbjct: 73  FAAGQPVDGFQGA-QPEEQLR 92

Its gene has been sequenced from several gammaproteobacteria and actinobacteria. Length = 96

>gnl|CDD|239247 cd02949, TRX_NTR, TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains

 Score = 44.8 bits (106), Expect = 7e-07
 Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 7/84 (8%)

Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLV 136
           +++ YT+  CGPC+ ++P +      +   V F++ID+D   E A+A  ++   PT    
Sbjct: 16  ILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGIMGT-PTVQFF 74

Query: 137 KRGKEIDRVVGAKKDELQMKTEKR 160
           K  + +  + G K     MK+E R
Sbjct: 75  KDKELVKEISGVK-----MKSEYR 93

The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress. Length = 97

>gnl|CDD|239287 cd02989, Phd_like_TxnDC9, Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif

 Score = 45.3 bits (108), Expect = 7e-07
 Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 1/59 (1%)

Query: 89  PCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVG 147
            CK ++ +++  A  + + +FIK++ +  P   +  + I VLPT +L K GK +DR+VG
Sbjct: 36  RCKIMDKHLEILAKKHLETKFIKVNAEKAPFLVEKLN-IKVLPTVILFKNGKTVDRIVG 93

The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit. Length = 113

>gnl|CDD|239259 cd02961, PDI_a_family, Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

 Score = 44.1 bits (105), Expect = 1e-06
 Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 4/67 (5%)

Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMY---TDVQFIKIDVDWLPEAAKAFDLIDVLPTFV 134
           V++ + A WCG CK + P  +  A        V   K+D     +    +  +   PT  
Sbjct: 18  VLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYG-VRGYPTIK 76

Query: 135 LVKRGKE 141
           L   G +
Sbjct: 77  LFPNGSK 83

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies are necessary for the isomerase function. The different types of PDIs may show different substrate specificities and tissue-specific expression, or may be induced by stress. PDIs are in their reduced form at steady state and are oxidized to the active form by Ero1, which is localized in the ER through ERp44. Some members of this family also contain a DnaJ domain in addition to the redox active a domains; examples are ERdj5 and Pfj2. Also included in the family is the redox inactive N-terminal TRX-like domain of ERp29. Length = 101

>gnl|CDD|239264 cd02966, TlpA_like_family, TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins

 Score = 43.4 bits (103), Expect = 3e-06
 Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 25/95 (26%)

Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMY--TDVQFIKIDVD-WLPEAAKAF---------D 125
           V++ + A+WC PC+   P ++  A  Y    V+ + ++VD   P A KAF          
Sbjct: 22  VLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPV 81

Query: 126 LID------------VLPTFVLV-KRGKEIDRVVG 147
           L+D             LPT  L+ + G+   R VG
Sbjct: 82  LLDPDGELAKAYGVRGLPTTFLIDRDGRIRARHVG 116

TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases. Length = 116

>gnl|CDD|181812 PRK09381, trxA, thioredoxin; Provisional

 Score = 42.7 bits (100), Expect = 6e-06
 Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 2/71 (2%)

Query: 79  VIYYTAAWCGPCKFIEPYVKDFAAMYT-DVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVK 137
           ++ + A WCGPCK I P + + A  Y   +   K+++D  P  A  +  I  +PT +L K
Sbjct: 25  LVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYG-IRGIPTLLLFK 83

Query: 138 RGKEIDRVVGA 148
            G+     VGA
Sbjct: 84  NGEVAATKVGA 94

Length = 109

>gnl|CDD|239309 cd03011, TlpA_like_ScsD_MtbDsbE, TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif

 Score = 41.9 bits (99), Expect = 1e-05
 Identities = 20/93 (21%), Positives = 34/93 (36%), Gaps = 25/93 (26%)

Query: 77  KVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDV---------DWLPEAAKAFDLI 127
            V++Y+ A WC  C+F  P V   AA   D   + + +          ++ +    F +I
Sbjct: 22  PVLVYFWATWCPVCRFTSPTVNQLAA---DYPVVSVALRSGDDGAVARFMQKKGYGFPVI 78

Query: 128 D-------------VLPTFVLVKRGKEIDRVVG 147
           +             V P  V+V  G  +    G
Sbjct: 79  NDPDGVISARWGVSVTPAIVIVDPGGIVFVTTG 111

The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c. Length = 123

>gnl|CDD|239255 cd02957, Phd_like, Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions

 Score = 41.8 bits (99), Expect = 1e-05
 Identities = 20/58 (34%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 90  CKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVG 147
           CK ++ ++++ AA Y + +F+KI+ +         D I VLPT ++ K G+ ID +VG
Sbjct: 39  CKILDSHLEELAAKYPETKFVKINAE-KAFLVNYLD-IKVLPTLLVYKNGELIDNIVG 94

Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain. Also included in this family is a PhLP characterized as a viral inhibitor of apoptosis (IAP)-associated factor, named VIAF, that functions in caspase activation during apoptosis. Length = 113

>gnl|CDD|239260 cd02962, TMX2, TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library

 Score = 41.6 bits (98), Expect = 3e-05
 Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 11/83 (13%)

Query: 69  GNVVFWVLKVVIYYTAAWCGPCKFIEPYVKDFAAMYT--DVQFIKIDVDWLPEAAKAF-- 124
              V W+    + +   W   C    P   + +  Y   +++F KID+   P  A+ F  
Sbjct: 45  DKRVTWL----VEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRV 100

Query: 125 ---DLIDVLPTFVLVKRGKEIDR 144
               L   LPT +L + GKE+ R
Sbjct: 101 STSPLSKQLPTIILFQGGKEVAR 123

It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail. Length = 152

>gnl|CDD|239246 cd02948, TRX_NDPK, TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein

 Score = 37.7 bits (88), Expect = 3e-04
 Identities = 28/89 (31%), Positives = 35/89 (39%), Gaps = 21/89 (23%)

Query: 76  LKVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDV--DWLPEAAKAFDLIDVL--- 130
           L VV  Y   WCGPCK +    K           IK ++  D L  A    D ID L   
Sbjct: 19  LTVVDVYQE-WCGPCKAVVSLFKK----------IKNELGDDLLHFATAEADTIDTLKRY 67

Query: 131 -----PTFVLVKRGKEIDRVVGAKKDELQ 154
                PTF+  K G+ +  + GA    L 
Sbjct: 68  RGKCEPTFLFYKNGELVAVIRGANAPLLN 96

Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which is also associated with microtubular structures. The other members of this group are hypothetical insect proteins containing a TRX domain and outer arm dynein light chains (14 and 16kDa) of Chlamydomonas reinhardtii. Using standard assays, the fusion proteins have shown no TRX enzymatic activity. Length = 102

>gnl|CDD|239283 cd02985, TRX_CDSP32, TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif

 Score = 37.8 bits (88), Expect = 4e-04
 Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 8/81 (9%)

Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDL-----IDVLPT 132
           VV+ +     GP   I P +   +    DV F+ ++ D   E     +L     I  +P 
Sbjct: 18  VVLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGD---ENDSTMELCRREKIIEVPH 74

Query: 133 FVLVKRGKEIDRVVGAKKDEL 153
           F+  K G++I    G   DEL
Sbjct: 75  FLFYKDGEKIHEEEGIGPDEL 95

CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form. Length = 103

>gnl|CDD|239248 cd02950, TxlA, TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus

 Score = 37.3 bits (87), Expect = 8e-04
 Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 9/83 (10%)

Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVD---WLPEAAKAFDLIDVLPTF 133
           +V +Y A WC  C+ + P V      Y D V F+ ++VD   WLPE  + +  +D +P F
Sbjct: 24  LVEFY-ADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDR-YR-VDGIPHF 80

Query: 134 VLVKR-GKEIDRVVGAK-KDELQ 154
           V + R G E  + +G + K  L 
Sbjct: 81  VFLDREGNEEGQSIGLQPKQVLA 103

It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport. Length = 142

>gnl|CDD|239251 cd02953, DsbDgamma, DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD

 Score = 36.0 bits (84), Expect = 0.002
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 4/41 (9%)

Query: 78  VVIYYTAAWCGPCKFIEPYV----KDFAAMYTDVQFIKIDV 114
           V + +TA WC  CK  E  V    +  AA+  DV  ++ D 
Sbjct: 14  VFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADW 54

It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes. Length = 104

>gnl|CDD|221921 pfam13098, Thioredoxin_2, Thioredoxin-like domain

 Score = 35.9 bits (83), Expect = 0.002
 Identities = 20/88 (22%), Positives = 34/88 (38%), Gaps = 17/88 (19%)

Query: 78  VVIYYTAAWCGPCKFIEPYVK-----------DFAAMYTDVQFIKIDVDWLPEAAKAFDL 126
           V++ +T   C  CK +   +            +F  +Y +V   K   D+  E     +L
Sbjct: 8   VLVVFTDPDCPYCKKLHKELLKDPDVQEYLKDNFVVIYVNVDDSKEVTDFDGETLSEKEL 67

Query: 127 -----IDVLPTFVLV-KRGKEIDRVVGA 148
                +   PT V +   GKE+ R+ G 
Sbjct: 68  ARKYGVRGTPTIVFLDGDGKEVARLPGY 95

Length = 105

>gnl|CDD|239293 cd02995, PDI_a_PDI_a'_C, PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1

 Score = 34.8 bits (81), Expect = 0.004
 Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 3/41 (7%)

Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMY---TDVQFIKIDVD 115
           V++ + A WCG CK + P  ++ A       +V   K+D  
Sbjct: 21  VLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDAT 61

PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins, while PDI shows a wider substrate specificity. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. EFP1 is a binding partner protein of thyroid oxidase, which is responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. Length = 104

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	162
KOG0907	106	consensus Thioredoxin [Posttranslational modificat	99.93
KOG0910	150	consensus Thioredoxin-like protein [Posttranslatio	99.92
cd02985	103	TRX_CDSP32 TRX family, chloroplastic drought-induc	99.9
cd02954	114	DIM1 Dim1 family; Dim1 is also referred to as U5 s	99.89
PHA02278	103	thioredoxin-like protein	99.89
cd02948	102	TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus	99.88
PLN00410	142	U5 snRNP protein, DIM1 family; Provisional	99.88
PF00085	103	Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio	99.88
KOG0908	288	consensus Thioredoxin-like protein [Posttranslatio	99.88
cd02989	113	Phd_like_TxnDC9 Phosducin (Phd)-like family, Thior	99.87
cd02986	114	DLP Dim1 family, Dim1-like protein (DLP) subfamily	99.87
cd03065	120	PDI_b_Calsequestrin_N PDIb family, Calsequestrin s	99.86
PTZ00051	98	thioredoxin; Provisional	99.86
cd02957	113	Phd_like Phosducin (Phd)-like family; composed of	99.86
cd02956	96	ybbN ybbN protein family; ybbN is a hypothetical p	99.86
cd03006	113	PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamil	99.85
COG3118	304	Thioredoxin domain-containing protein [Posttransla	99.85
cd02999	100	PDI_a_ERp44_like PDIa family, endoplasmic reticulu	99.85
cd02984	97	TRX_PICOT TRX domain, PICOT (for PKC-interacting c	99.85
cd02963	111	TRX_DnaJ TRX domain, DnaJ domain containing protei	99.85
cd03004	104	PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam	99.85
cd03003	101	PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam	99.84
PRK10996	139	thioredoxin 2; Provisional	99.84
PRK09381	109	trxA thioredoxin; Provisional	99.84
cd02987	175	Phd_like_Phd Phosducin (Phd)-like family, Phd subf	99.83
cd02996	108	PDI_a_ERp44 PDIa family, endoplasmic reticulum pro	99.82
cd02994	101	PDI_a_TMX PDIa family, TMX subfamily; composed of	99.82
cd02949	97	TRX_NTR TRX domain, novel NADPH thioredoxin reduct	99.81
cd02965	111	HyaE HyaE family; HyaE is also called HupG and Hox	99.81
cd02950	142	TxlA TRX-like protein A (TxlA) family; TxlA was or	99.81
TIGR01068	101	thioredoxin thioredoxin. Several proteins, such as	99.8
cd02962	152	TMX2 TMX2 family; composed of proteins similar to	99.79
PTZ00443	224	Thioredoxin domain-containing protein; Provisional	99.79
cd03002	109	PDI_a_MPD1_like PDI family, MPD1-like subfamily; c	99.79
cd02975	113	PfPDO_like_N Pyrococcus furiosus protein disulfide	99.79
cd03005	102	PDI_a_ERp46 PDIa family, endoplasmic reticulum pro	99.79
cd02997	104	PDI_a_PDIR PDIa family, PDIR subfamily; composed o	99.78
TIGR01126	102	pdi_dom protein disulfide-isomerase domain. This m	99.78
cd02953	104	DsbDgamma DsbD gamma family; DsbD gamma is the C-t	99.78
cd02951	125	SoxW SoxW family; SoxW is a bacterial periplasmic	99.77
PTZ00062	204	glutaredoxin; Provisional	99.77
cd03000	104	PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o	99.77
cd02988	192	Phd_like_VIAF Phosducin (Phd)-like family, Viral i	99.76
cd03001	103	PDI_a_P5 PDIa family, P5 subfamily; composed of eu	99.76
TIGR01295	122	PedC_BrcD bacteriocin transport accessory protein,	99.74
cd02995	104	PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain	99.73
cd02993	109	PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfat	99.72
cd02947	93	TRX_family TRX family; composed of two groups: Gro	99.72
cd02998	105	PDI_a_ERp38 PDIa family, endoplasmic reticulum pro	99.72
cd02952	119	TRP14_like Human TRX-related protein 14 (TRP14)-li	99.7
cd02961	101	PDI_a_family Protein Disulfide Isomerase (PDIa) fa	99.7
PRK14018	521	trifunctional thioredoxin/methionine sulfoxide red	99.69
PRK00293	571	dipZ thiol:disulfide interchange protein precursor	99.68
cd02959	117	ERp19 Endoplasmic reticulum protein 19 (ERp19) fam	99.67
TIGR00411	82	redox_disulf_1 small redox-active disulfide protei	99.66
cd02982	103	PDI_b'_family Protein Disulfide Isomerase (PDIb')	99.65
cd02992	114	PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidas	99.65
TIGR00385	173	dsbE periplasmic protein thiol:disulfide oxidoredu	99.63
PTZ00102	477	disulphide isomerase; Provisional	99.63
TIGR01130	462	ER_PDI_fam protein disulfide isomerases, eukaryoti	99.62
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	99.62
PLN02309	457	5'-adenylylsulfate reductase	99.62
TIGR00424	463	APS_reduc 5'-adenylylsulfate reductase, thioredoxi	99.62
PRK03147	173	thiol-disulfide oxidoreductase; Provisional	99.61
PTZ00102	477	disulphide isomerase; Provisional	99.61
KOG0190	493	consensus Protein disulfide isomerase (prolyl 4-hy	99.61
PRK15412	185	thiol:disulfide interchange protein DsbE; Provisio	99.61
cd03010	127	TlpA_like_DsbE TlpA-like family, DsbE (also known	99.6
PHA02125	75	thioredoxin-like protein	99.6
cd02955	124	SSP411 TRX domain, SSP411 protein family; members	99.59
PF13098	112	Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_	99.58
TIGR02738	153	TrbB type-F conjugative transfer system pilin asse	99.57
cd03007	116	PDI_a_ERp29_N PDIa family, endoplasmic reticulum p	99.55
cd02958	114	UAS UAS family; UAS is a domain of unknown functio	99.55
cd03009	131	TryX_like_TryX_NRX Tryparedoxin (TryX)-like family	99.55
PF08534	146	Redoxin: Redoxin; InterPro: IPR013740 This redoxin	99.54
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	99.54
cd03011	123	TlpA_like_ScsD_MtbDsbE TlpA-like family, suppresso	99.54
PTZ00056	199	glutathione peroxidase; Provisional	99.53
TIGR00412	76	redox_disulf_2 small redox-active disulfide protei	99.52
cd02966	116	TlpA_like_family TlpA-like family; composed of Tlp	99.52
TIGR02661	189	MauD methylamine dehydrogenase accessory protein M	99.52
KOG4277	468	consensus Uncharacterized conserved protein, conta	99.52
PLN02399	236	phospholipid hydroperoxide glutathione peroxidase	99.52
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.52
cd03008	146	TryX_like_RdCVF Tryparedoxin (TryX)-like family, R	99.51
PRK13728	181	conjugal transfer protein TrbB; Provisional	99.5
cd02967	114	mauD Methylamine utilization (mau) D family; mauD	99.5
cd02973	67	TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-	99.49
TIGR02740	271	TraF-like TraF-like protein. This protein is relat	99.49
PF13905	95	Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_	99.49
cd03026	89	AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxid	99.48
KOG0912	375	consensus Thiol-disulfide isomerase and thioredoxi	99.48
TIGR01130	462	ER_PDI_fam protein disulfide isomerases, eukaryoti	99.48
PLN02412	167	probable glutathione peroxidase	99.45
cd02964	132	TryX_like_family Tryparedoxin (TryX)-like family;	99.43
cd00340	152	GSH_Peroxidase Glutathione (GSH) peroxidase family	99.4
cd02960	130	AGR Anterior Gradient (AGR) family; members of thi	99.39
TIGR02540	153	gpx7 putative glutathione peroxidase Gpx7. This mo	99.39
KOG0190	493	consensus Protein disulfide isomerase (prolyl 4-hy	99.38
PRK11509	132	hydrogenase-1 operon protein HyaE; Provisional	99.38
cd03012	126	TlpA_like_DipZ_like TlpA-like family, DipZ-like su	99.38
COG4232	569	Thiol:disulfide interchange protein [Posttranslati	99.37
smart00594	122	UAS UAS domain.	99.36
cd02969	171	PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypot	99.33
TIGR01626	184	ytfJ_HI0045 conserved hypothetical protein YtfJ-fa	99.33
KOG0191	383	consensus Thioredoxin/protein disulfide isomerase	99.29
cd03014	143	PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical	99.29
cd03017	140	PRX_BCP Peroxiredoxin (PRX) family, Bacterioferrit	99.28
PRK00522	167	tpx lipid hydroperoxide peroxidase; Provisional	99.28
PTZ00256	183	glutathione peroxidase; Provisional	99.28
PF00578	124	AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Per	99.28
PF02114	265	Phosducin: Phosducin; InterPro: IPR024253 The oute	99.25
PF13899	82	Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_	99.24
PRK09437	154	bcp thioredoxin-dependent thiol peroxidase; Review	99.19
TIGR02196	74	GlrX_YruB Glutaredoxin-like protein, YruB-family.	99.18
COG0526	127	TrxA Thiol-disulfide isomerase and thioredoxins [P	99.11
KOG0191	383	consensus Thioredoxin/protein disulfide isomerase	99.11
cd03018	149	PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-lik	99.1
cd03015	173	PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-	99.1
cd02970	149	PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypot	99.09
KOG1672	211	consensus ATP binding protein [Posttranslational m	99.07
PF06110	119	DUF953: Eukaryotic protein of unknown function (DU	99.03
TIGR03137	187	AhpC peroxiredoxin. This gene contains two invaria	99.03
cd02971	140	PRX_family Peroxiredoxin (PRX) family; composed of	99.03
COG2143	182	Thioredoxin-related protein [Posttranslational mod	99.03
PF14595	129	Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.	99.02
TIGR02200	77	GlrX_actino Glutaredoxin-like protein. This family	99.02
PRK10606	183	btuE putative glutathione peroxidase; Provisional	99.01
KOG3414	142	consensus Component of the U4/U6.U5 snRNP/mitosis	98.99
cd02968	142	SCO SCO (an acronym for Synthesis of Cytochrome c	98.98
PF03190	163	Thioredox_DsbH: Protein of unknown function, DUF25	98.98
KOG0914	265	consensus Thioredoxin-like protein [Posttranslatio	98.95
KOG1731	606	consensus FAD-dependent sulfhydryl oxidase/quiesci	98.89
cd01659	69	TRX_superfamily Thioredoxin (TRX) superfamily; a l	98.87
cd02991	116	UAS_ETEA UAS family, ETEA subfamily; composed of p	98.86
PRK13190	202	putative peroxiredoxin; Provisional	98.86
PF13728	215	TraF: F plasmid transfer operon protein	98.85
KOG2501	157	consensus Thioredoxin, nucleoredoxin and related p	98.83
PF13192	76	Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZY	98.81
PRK11200	85	grxA glutaredoxin 1; Provisional	98.8
KOG0911	227	consensus Glutaredoxin-related protein [Posttransl	98.77
PF11009	105	DUF2847: Protein of unknown function (DUF2847); In	98.75
PRK13599	215	putative peroxiredoxin; Provisional	98.75
PF02966	133	DIM1: Mitosis protein DIM1; InterPro: IPR004123 Th	98.73
cd02976	73	NrdH NrdH-redoxin (NrdH) family; NrdH is a small m	98.73
PRK10382	187	alkyl hydroperoxide reductase subunit C; Provision	98.73
PRK13191	215	putative peroxiredoxin; Provisional	98.73
PRK15000	200	peroxidase; Provisional	98.73
TIGR02180	84	GRX_euk Glutaredoxin. This model represents eukary	98.71
TIGR02739	256	TraF type-F conjugative transfer system pilin asse	98.66
cd03016	203	PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX sub	98.64
PRK13189	222	peroxiredoxin; Provisional	98.63
KOG3425	128	consensus Uncharacterized conserved protein [Funct	98.62
TIGR02183	86	GRXA Glutaredoxin, GrxA family. This model include	98.61
PTZ00137	261	2-Cys peroxiredoxin; Provisional	98.57
PRK13703	248	conjugal pilus assembly protein TraF; Provisional	98.57
PTZ00253	199	tryparedoxin peroxidase; Provisional	98.5
TIGR02194	72	GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-red	98.5
PRK10877	232	protein disulfide isomerase II DsbC; Provisional	98.5
PRK10329	81	glutaredoxin-like protein; Provisional	98.47
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	98.46
COG1225	157	Bcp Peroxiredoxin [Posttranslational modification,	98.43
PF00462	60	Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Gl	98.42
KOG0913	248	consensus Thiol-disulfide isomerase and thioredoxi	98.39
cd03023	154	DsbA_Com1_like DsbA family, Com1-like subfamily; c	98.31
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	98.27
cd03020	197	DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamil	98.26
cd03419	82	GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX h	98.23
TIGR02189	99	GlrX-like_plant Glutaredoxin-like family. This fam	98.21
TIGR02190	79	GlrX-dom Glutaredoxin-family domain. This C-termin	98.21
PF05768	81	DUF836: Glutaredoxin-like domain (DUF836); InterPr	98.2
cd02066	72	GRX_family Glutaredoxin (GRX) family; composed of	98.14
KOG3171	273	consensus Conserved phosducin-like protein [Signal	98.14
PRK11657	251	dsbG disulfide isomerase/thiol-disulfide oxidase;	98.13
PHA03050	108	glutaredoxin; Provisional	98.11
TIGR02181	79	GRX_bact Glutaredoxin, GrxC family. This family of	98.09
cd03029	72	GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hyb	98.07
cd03027	73	GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Eg	98.06
cd03418	75	GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX b	98.05
PF13848	184	Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_	98.04
PF01216	383	Calsequestrin: Calsequestrin; InterPro: IPR001393	98.03
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	98.03
PF13462	162	Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DV	97.99
KOG3170	240	consensus Conserved phosducin-like protein [Signal	97.93
cd03019	178	DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a m	97.91
TIGR00365	97	monothiol glutaredoxin, Grx4 family. The gene for	97.85
COG0695	80	GrxC Glutaredoxin and related proteins [Posttransl	97.84
PF07449	107	HyaE: Hydrogenase-1 expression protein HyaE; Inter	97.77
cd03028	90	GRX_PICOT_like Glutaredoxin (GRX) family, PKC-inte	97.75
PRK10638	83	glutaredoxin 3; Provisional	97.71
KOG2603	331	consensus Oligosaccharyltransferase, gamma subunit	97.66
PRK10954	207	periplasmic protein disulfide isomerase I; Provisi	97.66
cd02981	97	PDI_b_family Protein Disulfide Isomerase (PDIb) fa	97.63
cd03013	155	PRX5_like Peroxiredoxin (PRX) family, PRX5-like su	97.59
PF00837	237	T4_deiodinase: Iodothyronine deiodinase; InterPro:	97.58
COG1331	667	Highly conserved protein containing a thioredoxin	97.56
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	97.54
PRK10824	115	glutaredoxin-4; Provisional	97.53
cd02983	130	P5_C P5 family, C-terminal redox inactive TRX-like	97.37
cd03073	111	PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 s	97.28
cd03072	111	PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second	97.22
cd02972	98	DsbA_family DsbA family; consists of DsbA and DsbA	97.2
PRK12759	410	bifunctional gluaredoxin/ribonucleoside-diphosphat	97.16
PTZ00062	204	glutaredoxin; Provisional	97.12
KOG1752	104	consensus Glutaredoxin and related proteins [Postt	97.05
COG1999	207	Uncharacterized protein SCO1/SenC/PrrC, involved i	96.93
COG0386	162	BtuE Glutathione peroxidase [Posttranslational mod	96.7
PF07912	126	ERp29_N: ERp29, N-terminal domain; InterPro: IPR01	96.48
PF02630	174	SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This fam	96.43
PF13848	184	Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_	96.41
COG1651	244	DsbG Protein-disulfide isomerase [Posttranslationa	96.36
KOG0855	211	consensus Alkyl hydroperoxide reductase, thiol spe	96.33
cd03066	102	PDI_b_Calsequestrin_middle PDIb family, Calsequest	96.28
cd02990	136	UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1	96.17
KOG2792	280	consensus Putative cytochrome C oxidase assembly p	96.13
cd03031	147	GRX_GRX_like Glutaredoxin (GRX) family, GRX-like d	95.85
COG4545	85	Glutaredoxin-related protein [Posttranslational mo	95.85
PF01323	193	DSBA: DSBA-like thioredoxin domain; InterPro: IPR0	95.83
PF13743	176	Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.	95.57
cd02977	105	ArsC_family Arsenate Reductase (ArsC) family; comp	95.47
KOG1651	171	consensus Glutathione peroxidase [Posttranslationa	95.28
cd03041	77	GST_N_2GST_N GST_N family, 2 repeats of the N-term	95.02
cd03036	111	ArsC_like Arsenate Reductase (ArsC) family, unknow	94.98
cd02978	72	KaiB_like KaiB-like family; composed of the circad	94.83
PF06764	202	DUF1223: Protein of unknown function (DUF1223); In	94.38
PF06053	249	DUF929: Domain of unknown function (DUF929); Inter	94.28
COG0450	194	AhpC Peroxiredoxin [Posttranslational modification	94.26
cd03060	71	GST_N_Omega_like GST_N family, Omega-like subfamil	94.23
KOG2507	506	consensus Ubiquitin regulatory protein UBXD2, cont	93.99
KOG2640	319	consensus Thioredoxin [Function unknown]	93.93
PF09673	113	TrbC_Ftype: Type-F conjugative transfer system pil	93.14
TIGR02742	130	TrbC_Ftype type-F conjugative transfer system pili	93.06
PRK01655	131	spxA transcriptional regulator Spx; Reviewed	92.86
TIGR01617	117	arsC_related transcriptional regulator, Spx/MgsR f	92.71
PHA03075	123	glutaredoxin-like protein; Provisional	92.34
cd03035	105	ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb s	91.98
cd03040	77	GST_N_mPGES2 GST_N family; microsomal Prostaglandi	91.87
TIGR02654	87	circ_KaiB circadian clock protein KaiB. Members of	91.81
cd03037	71	GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) sub	91.32
PF00255	108	GSHPx: Glutathione peroxidase; InterPro: IPR000889	91.11
PRK09301	103	circadian clock protein KaiB; Provisional	91.05
cd03069	104	PDI_b_ERp57 PDIb family, ERp57 subfamily, first re	90.99
cd03051	74	GST_N_GTT2_like GST_N family, Saccharomyces cerevi	90.68
COG5429	261	Uncharacterized secreted protein [Function unknown	90.31
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	90.19
cd03032	115	ArsC_Spx Arsenate Reductase (ArsC) family, Spx sub	90.14
COG3019	149	Predicted metal-binding protein [General function	90.02
PRK12559	131	transcriptional regulator Spx; Provisional	89.93
cd03059	73	GST_N_SspA GST_N family, Stringent starvation prot	89.64
cd00570	71	GST_N_family Glutathione S-transferase (GST) famil	89.63
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	89.62
cd02974	94	AhpF_NTD_N Alkyl hydroperoxide reductase F subunit	89.58
cd03045	74	GST_N_Delta_Epsilon GST_N family, Class Delta and	89.23
cd03067	112	PDI_b_PDIR_N PDIb family, PDIR subfamily, N-termin	89.09
PF13778	118	DUF4174: Domain of unknown function (DUF4174)	89.07
cd03068	107	PDI_b_ERp72 PDIb family, ERp72 subfamily, first re	88.1
PRK13344	132	spxA transcriptional regulator Spx; Reviewed	88.0
PF07689	82	KaiB: KaiB domain; InterPro: IPR011649 The cyanoba	87.2
PF13417	75	GST_N_3: Glutathione S-transferase, N-terminal dom	87.01
COG2761	225	FrnE Predicted dithiol-disulfide isomerase involve	86.63
COG3531	212	Predicted protein-disulfide isomerase [Posttransla	85.64
PF06953	123	ArsD: Arsenical resistance operon trans-acting rep	85.23
COG0278	105	Glutaredoxin-related protein [Posttranslational mo	84.36
COG2077	158	Tpx Peroxiredoxin [Posttranslational modification,	83.74
PF04592	238	SelP_N: Selenoprotein P, N terminal region; InterP	83.64
cd03055	89	GST_N_Omega GST_N family, Class Omega subfamily; G	83.62
cd03024	201	DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a D	81.96
cd03056	73	GST_N_4 GST_N family, unknown subfamily 4; compose	80.11

>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=6.4e-25  Score=149.83  Aligned_cols=103  Identities=45%  Similarity=0.785  Sum_probs=95.5

Q ss_pred             EeechhhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhhhhhhHHHHHHHHh
Q 031271           24 ELQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYVKDFAAM  103 (162)
Q Consensus        24 ~i~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~~~l~~~~~~  103 (162)
                      .+.+.++|+.....+..+++++                                 +++|||+||+||+.+.|.+++++.+
T Consensus         3 ~v~~~~~~~~~~~~~~~~~kli---------------------------------VvdF~a~wCgPCk~i~P~~~~La~~   49 (106)
T KOG0907|consen    3 EVETVSDLDLVLSAAEAGDKLV---------------------------------VVDFYATWCGPCKAIAPKFEKLAEK   49 (106)
T ss_pred             eEEehhhHHHHHHHhhCCCCeE---------------------------------EEEEECCCCcchhhhhhHHHHHHHH
Confidence            3456677888888877778998                                 9999999999999999999999999


Q ss_pred             cCCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCCCHHHHHHHHHHH
Q 031271          104 YTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQMKTEKR  160 (162)
Q Consensus       104 ~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~~~~~l~~~l~~~  160 (162)
                      |+++.|++||+|++.++++.|+| ..+|||++|++|+.+.++.|.++++|++.+.++
T Consensus        50 y~~v~Flkvdvde~~~~~~~~~V-~~~PTf~f~k~g~~~~~~vGa~~~~l~~~i~~~  105 (106)
T KOG0907|consen   50 YPDVVFLKVDVDELEEVAKEFNV-KAMPTFVFYKGGEEVDEVVGANKAELEKKIAKH  105 (106)
T ss_pred             CCCCEEEEEecccCHhHHHhcCc-eEeeEEEEEECCEEEEEEecCCHHHHHHHHHhc
Confidence            99999999999999999999999 999999999999999999999999999998875

>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=4.8e-25  Score=156.66  Aligned_cols=83  Identities=33%  Similarity=0.755  Sum_probs=80.4

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCC-cEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHHH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQMK  156 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~-v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~~  156 (162)
                      +|+|||+||+||+.+.|.|+++..+|.+ +.|+++|+|++++++.+|+| ..+||+++|+||+.++++.|. +.+.|+++
T Consensus        65 lVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y~I-~avPtvlvfknGe~~d~~vG~~~~~~l~~~  143 (150)
T KOG0910|consen   65 LVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAEDYEI-SAVPTVLVFKNGEKVDRFVGAVPKEQLRSL  143 (150)
T ss_pred             EEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHhhcce-eeeeEEEEEECCEEeeeecccCCHHHHHHH
Confidence            9999999999999999999999999988 99999999999999999999 999999999999999999999 89999999


Q ss_pred             HHHHhC
Q 031271          157 TEKRRN  162 (162)
Q Consensus       157 l~~~~~  162 (162)
                      |+++++
T Consensus       144 i~k~l~  149 (150)
T KOG0910|consen  144 IKKFLK  149 (150)
T ss_pred             HHHHhc
Confidence            998763

>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif

Probab=99.90  E-value=6.1e-23  Score=139.53  Aligned_cols=98  Identities=23%  Similarity=0.306  Sum_probs=88.3

Q ss_pred             chhhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhhhhhhHHHHHHHHhcCC
Q 031271           27 SKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYVKDFAAMYTD  106 (162)
Q Consensus        27 s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~  106 (162)
                      +.++|++.+.++  .++++                                 +|+||++||++|+.+.|.|+++++++++
T Consensus         2 ~~~~~~~~i~~~--~~k~v---------------------------------vv~F~a~wC~~C~~~~p~l~~la~~~~~   46 (103)
T cd02985           2 SVEELDEALKKA--KGRLV---------------------------------VLEFALKHSGPSVKIYPTMVKLSRTCND   46 (103)
T ss_pred             CHHHHHHHHHHc--CCCEE---------------------------------EEEEECCCCHhHHHHhHHHHHHHHHCCC
Confidence            567888888653  37778                                 9999999999999999999999999988


Q ss_pred             cEEEEEECCCcH---HHHHhcCCCCCccEEEEEcCCeEEEEEcCCCHHHHHHHHHHH
Q 031271          107 VQFIKIDVDWLP---EAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQMKTEKR  160 (162)
Q Consensus       107 v~f~~vd~d~~~---~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~~~~~l~~~l~~~  160 (162)
                      +.|+.||+|+++   +++++|+| .++||+++|++|+.+.++.|..+.+|++.+..+
T Consensus        47 v~~~~vd~d~~~~~~~l~~~~~V-~~~Pt~~~~~~G~~v~~~~G~~~~~l~~~~~~~  102 (103)
T cd02985          47 VVFLLVNGDENDSTMELCRREKI-IEVPHFLFYKDGEKIHEEEGIGPDELIGDVLYY  102 (103)
T ss_pred             CEEEEEECCCChHHHHHHHHcCC-CcCCEEEEEeCCeEEEEEeCCCHHHHHHHHHhc
Confidence            999999999874   79999999 999999999999999999999999998887654

CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.

>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein

Probab=99.89  E-value=6.1e-23  Score=141.37  Aligned_cols=81  Identities=22%  Similarity=0.357  Sum_probs=73.1

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCC-cEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-C-------
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-K-------  149 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~-v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~-------  149 (162)
                      +|+|||+||++|+.|.|.|++++.++++ +.|++||+|++++++++|+| .++||+++|++|+.+.+..|. +       
T Consensus        18 VV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la~~~~V-~~iPTf~~fk~G~~v~~~~G~~~~~~~~~~   96 (114)
T cd02954          18 VIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFNKMYEL-YDPPTVMFFFRNKHMKIDLGTGNNNKINWV   96 (114)
T ss_pred             EEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHcCC-CCCCEEEEEECCEEEEEEcCCCCCceEEEe
Confidence            9999999999999999999999999998 79999999999999999999 999999999999999999875 3       


Q ss_pred             ---HHHHHHHHHHH
Q 031271          150 ---KDELQMKTEKR  160 (162)
Q Consensus       150 ---~~~l~~~l~~~  160 (162)
                         .+.+++.++.+
T Consensus        97 ~~~~~~~~~~~~~~  110 (114)
T cd02954          97 FEDKQEFIDIIETI  110 (114)
T ss_pred             cCcHHHHHHHHHHH
Confidence               45566665543

It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.

>PHA02278 thioredoxin-like protein

Probab=99.89  E-value=3.2e-22  Score=136.11  Aligned_cols=77  Identities=19%  Similarity=0.350  Sum_probs=70.1

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcC-CcEEEEEECCCc----HHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYT-DVQFIKIDVDWL----PEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDE  152 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~-~v~f~~vd~d~~----~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~  152 (162)
                      +|+|||+||++|+.+.|.++++++++. .+.|+++|+|.+    ++++++|+| .++||+++|++|+.+.++.|. +.+.
T Consensus        18 vV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I-~~iPT~i~fk~G~~v~~~~G~~~~~~   96 (103)
T PHA02278         18 IVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDI-MSTPVLIGYKDGQLVKKYEDQVTPMQ   96 (103)
T ss_pred             EEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCC-ccccEEEEEECCEEEEEEeCCCCHHH
Confidence            999999999999999999999998754 378999999976    689999999 999999999999999999997 7877


Q ss_pred             HHHH
Q 031271          153 LQMK  156 (162)
Q Consensus       153 l~~~  156 (162)
                      |.++
T Consensus        97 l~~~  100 (103)
T PHA02278         97 LQEL  100 (103)
T ss_pred             HHhh
Confidence            7654

>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein

Probab=99.88  E-value=7.5e-22  Score=133.87  Aligned_cols=80  Identities=25%  Similarity=0.471  Sum_probs=75.3

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCC--cEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCCCHHHHHHH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTD--VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQMK  156 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~--v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~~~~~l~~~  156 (162)
                      +|+|||+||++|+.+.|.++++++.+++  +.|+.+|+| +++++++|+| ..+||+++|++|+.+.+..|.+++.|+++
T Consensus        21 vv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~~~~~~~v-~~~Pt~~~~~~g~~~~~~~G~~~~~~~~~   98 (102)
T cd02948          21 VVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TIDTLKRYRG-KCEPTFLFYKNGELVAVIRGANAPLLNKT   98 (102)
T ss_pred             EEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHHHHHHcCC-CcCcEEEEEECCEEEEEEecCChHHHHHH
Confidence            9999999999999999999999999964  789999999 7899999999 99999999999999999999999999999


Q ss_pred             HHHH
Q 031271          157 TEKR  160 (162)
Q Consensus       157 l~~~  160 (162)
                      |+++
T Consensus        99 i~~~  102 (102)
T cd02948          99 ITEL  102 (102)
T ss_pred             HhhC
Confidence            8763

Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which

>PLN00410 U5 snRNP protein, DIM1 family; Provisional

Probab=99.88  E-value=6.5e-22  Score=141.08  Aligned_cols=105  Identities=21%  Similarity=0.278  Sum_probs=92.6

Q ss_pred             ceeEeechhhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhhhhhhHHHHHH
Q 031271           21 LVMELQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYVKDF  100 (162)
Q Consensus        21 ~v~~i~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~~~l~~~  100 (162)
                      .+.++.|.++|++.+...  +++++                                 +|.|||+||++|+.+.|.|+++
T Consensus         4 ~l~~l~s~~e~d~~I~~~--~~~lV---------------------------------VvdF~A~WCgpCk~m~p~l~~l   48 (142)
T PLN00410          4 LLPHLHSGWAVDQAILAE--EERLV---------------------------------VIRFGHDWDETCMQMDEVLASV   48 (142)
T ss_pred             hHhhhCCHHHHHHHHHhc--CCCEE---------------------------------EEEEECCCChhHHHHHHHHHHH
Confidence            456788999999999853  57888                                 9999999999999999999999


Q ss_pred             HHhcCC-cEEEEEECCCcHHHHHhcCCCCCccEEE-EEcCCe-EEEEEcC--------C-CHHHHHHHHHHHh
Q 031271          101 AAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFV-LVKRGK-EIDRVVG--------A-KKDELQMKTEKRR  161 (162)
Q Consensus       101 ~~~~~~-v~f~~vd~d~~~~l~~~~~i~~~~Ptiv-~~~~Gk-~i~~~~g--------~-~~~~l~~~l~~~~  161 (162)
                      ++++++ +.|++||+|++++++..|+| ...|+++ +|++|+ .+++..|        . +.++|++.++.++
T Consensus        49 a~~~~~~~~~~kVDVDe~~dla~~y~I-~~~~t~~~ffk~g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~  120 (142)
T PLN00410         49 AETIKNFAVIYLVDITEVPDFNTMYEL-YDPCTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVY  120 (142)
T ss_pred             HHHcCCceEEEEEECCCCHHHHHHcCc-cCCCcEEEEEECCeEEEEEecccccccccccCCHHHHHHHHHHHH
Confidence            999998 88899999999999999999 8777655 889998 9999999        5 7788888887654

>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=99.88  E-value=2.7e-21  Score=129.88  Aligned_cols=81  Identities=36%  Similarity=0.716  Sum_probs=79.0

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcC-CcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHHH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYT-DVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQMK  156 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~-~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~~  156 (162)
                      +|+||++||++|+.+.|.|+++++.++ ++.|+.||+++++.++++|++ ..+||+++|++|+...++.|. +.+.|.++
T Consensus        21 vv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v-~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~   99 (103)
T PF00085_consen   21 VVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKELCKKYGV-KSVPTIIFFKNGKEVKRYNGPRNAESLIEF   99 (103)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTTC-SSSSEEEEEETTEEEEEEESSSSHHHHHHH
T ss_pred             EEEEeCCCCCccccccceecccccccccccccchhhhhccchhhhccCC-CCCCEEEEEECCcEEEEEECCCCHHHHHHH
Confidence            999999999999999999999999998 699999999999999999999 999999999999999999999 99999999


Q ss_pred             HHHH
Q 031271          157 TEKR  160 (162)
Q Consensus       157 l~~~  160 (162)
                      |++|
T Consensus       100 i~~~  103 (103)
T PF00085_consen  100 IEKH  103 (103)
T ss_dssp             HHHH
T ss_pred             HHcC
Confidence            9986

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....

>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.88  E-value=3.9e-22  Score=151.56  Aligned_cols=105  Identities=34%  Similarity=0.661  Sum_probs=100.4

Q ss_pred             ceeEeechhhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhhhhhhHHHHHH
Q 031271           21 LVMELQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYVKDF  100 (162)
Q Consensus        21 ~v~~i~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~~~l~~~  100 (162)
                      .|+.|+++.+|+..|..+  +.+++                                 +|+|+|+||+||++..|.++.+
T Consensus         2 ~Vi~v~~d~df~~~ls~a--g~k~v---------------------------------~Vdfta~wCGPCk~IaP~Fs~l   46 (288)
T KOG0908|consen    2 PVIVVNSDSDFQRELSAA--GGKLV---------------------------------VVDFTASWCGPCKRIAPIFSDL   46 (288)
T ss_pred             CeEEecCcHHHHHhhhcc--CceEE---------------------------------EEEEEecccchHHhhhhHHHHh
Confidence            488999999999999864  68889                                 9999999999999999999999


Q ss_pred             HHhcCCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCCCHHHHHHHHHHHh
Q 031271          101 AAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQMKTEKRR  161 (162)
Q Consensus       101 ~~~~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~~~~~l~~~l~~~~  161 (162)
                      +.+|++..|++||+|++...+..+|| ...|||++|+||+.++++.|.++..|++.+.+|.
T Consensus        47 ankYp~aVFlkVdVd~c~~taa~~gV-~amPTFiff~ng~kid~~qGAd~~gLe~kv~~~~  106 (288)
T KOG0908|consen   47 ANKYPGAVFLKVDVDECRGTAATNGV-NAMPTFIFFRNGVKIDQIQGADASGLEEKVAKYA  106 (288)
T ss_pred             hhhCcccEEEEEeHHHhhchhhhcCc-ccCceEEEEecCeEeeeecCCCHHHHHHHHHHHh
Confidence            99999999999999999999999999 9999999999999999999999999999999886

>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif

Probab=99.87  E-value=2.4e-21  Score=133.92  Aligned_cols=93  Identities=24%  Similarity=0.380  Sum_probs=86.0

Q ss_pred             CCCceeEeechhhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhhhhhhHHH
Q 031271           18 KTPLVMELQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYV   97 (162)
Q Consensus        18 ~~~~v~~i~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~~~l   97 (162)
                      +.+.+..|++.++|.+.+.+    ++++                                 +|+||++||++|+.+.|.+
T Consensus         2 ~~g~v~~i~~~~~~~~~i~~----~~~v---------------------------------vV~f~a~~c~~C~~~~p~l   44 (113)
T cd02989           2 GHGKYREVSDEKEFFEIVKS----SERV---------------------------------VCHFYHPEFFRCKIMDKHL   44 (113)
T ss_pred             CCCCeEEeCCHHHHHHHHhC----CCcE---------------------------------EEEEECCCCccHHHHHHHH
Confidence            46789999999999999853    4677                                 9999999999999999999


Q ss_pred             HHHHHhcCCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC
Q 031271           98 KDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA  148 (162)
Q Consensus        98 ~~~~~~~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~  148 (162)
                      ++++++++++.|++||++++++++++|+| ..+||+++|++|+.+.++.|.
T Consensus        45 ~~la~~~~~i~f~~Vd~~~~~~l~~~~~v-~~vPt~l~fk~G~~v~~~~g~   94 (113)
T cd02989          45 EILAKKHLETKFIKVNAEKAPFLVEKLNI-KVLPTVILFKNGKTVDRIVGF   94 (113)
T ss_pred             HHHHHHcCCCEEEEEEcccCHHHHHHCCC-ccCCEEEEEECCEEEEEEECc
Confidence            99999999999999999999999999999 999999999999999988765

The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.

>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1

Probab=99.87  E-value=3.4e-21  Score=132.06  Aligned_cols=97  Identities=14%  Similarity=0.279  Sum_probs=84.0

Q ss_pred             hhhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhhhhhhHHHHHHHHhcCC-
Q 031271           28 KHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-  106 (162)
Q Consensus        28 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~-  106 (162)
                      .++|++.+..+  +++++                                 ||.|+++||++|+.+.|.|++++++|++ 
T Consensus         2 ~~~~d~~i~~~--~~klV---------------------------------VVdF~a~WC~pCk~mdp~l~ela~~~~~~   46 (114)
T cd02986           2 KKEVDQAIKST--AEKVL---------------------------------VLRFGRDEDAVCLQLDDILSKTSHDLSKM   46 (114)
T ss_pred             HHHHHHHHHhc--CCCEE---------------------------------EEEEeCCCChhHHHHHHHHHHHHHHccCc
Confidence            57888888864  58888                                 9999999999999999999999999999 


Q ss_pred             cEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-----------CHHHHHHHHHHH
Q 031271          107 VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-----------KKDELQMKTEKR  160 (162)
Q Consensus       107 v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-----------~~~~l~~~l~~~  160 (162)
                      +.|++||+|+.+++++.|+| ...||+++|++|+.+.--.|.           +.++++..++..
T Consensus        47 ~~f~kVDVDev~dva~~y~I-~amPtfvffkngkh~~~d~gt~~~~k~~~~~~~k~~~idi~e~~  110 (114)
T cd02986          47 ASIYLVDVDKVPVYTQYFDI-SYIPSTIFFFNGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVI  110 (114)
T ss_pred             eEEEEEeccccHHHHHhcCc-eeCcEEEEEECCcEEEEecCCCCCcEEEEEcCchhHHHHHHHHH
Confidence            99999999999999999999 999999999999987644332           356677776644

Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.

>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=99.86  E-value=8.9e-21  Score=132.12  Aligned_cols=106  Identities=20%  Similarity=0.199  Sum_probs=91.9

Q ss_pred             cCCCceeEeechhhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChh--hh--h
Q 031271           17 AKTPLVMELQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGP--CK--F   92 (162)
Q Consensus        17 ~~~~~v~~i~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~--C~--~   92 (162)
                      .+...|..+++ ++|++.+.+   ++.++                                 |++||+.||++  |+  +
T Consensus         6 ~~~~~v~~lt~-~nF~~~v~~---~~~~v---------------------------------vv~f~a~wc~p~~Ck~~~   48 (120)
T cd03065           6 DGKDRVIDLNE-KNYKQVLKK---YDVLC---------------------------------LLYHEPVESDKEAQKQFQ   48 (120)
T ss_pred             CCCcceeeCCh-hhHHHHHHh---CCceE---------------------------------EEEECCCcCChhhChhhc
Confidence            34456777754 888888854   46677                                 99999999988  99  8


Q ss_pred             hhHHHHHHHHhc--CC-cEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHHHHHHHh
Q 031271           93 IEPYVKDFAAMY--TD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQMKTEKRR  161 (162)
Q Consensus        93 ~~~~l~~~~~~~--~~-v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~~l~~~~  161 (162)
                      +.|.+++++.++  ++ +.|++||+|++++++++|+| .++||+++|+||+.+. +.|. +.+.|.++|++..
T Consensus        49 ~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~I-~~iPTl~lfk~G~~v~-~~G~~~~~~l~~~l~~~~  119 (120)
T cd03065          49 MEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLGL-DEEDSIYVFKDDEVIE-YDGEFAADTLVEFLLDLI  119 (120)
T ss_pred             chhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcCC-ccccEEEEEECCEEEE-eeCCCCHHHHHHHHHHHh
Confidence            999999999887  54 99999999999999999999 9999999999999887 8888 8999999999875

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2

>PTZ00051 thioredoxin; Provisional

Probab=99.86  E-value=9.9e-21  Score=126.77  Aligned_cols=97  Identities=34%  Similarity=0.712  Sum_probs=88.6

Q ss_pred             ceeEeechhhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhhhhhhHHHHHH
Q 031271           21 LVMELQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYVKDF  100 (162)
Q Consensus        21 ~v~~i~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~~~l~~~  100 (162)
                      +|..+++.++|++.+.    .++++                                 +|+||++||++|+.+.|.++++
T Consensus         1 ~v~~i~~~~~~~~~~~----~~~~v---------------------------------li~f~~~~C~~C~~~~~~l~~l   43 (98)
T PTZ00051          1 MVHIVTSQAEFESTLS----QNELV---------------------------------IVDFYAEWCGPCKRIAPFYEEC   43 (98)
T ss_pred             CeEEecCHHHHHHHHh----cCCeE---------------------------------EEEEECCCCHHHHHHhHHHHHH
Confidence            4678888888888774    36777                                 9999999999999999999999


Q ss_pred             HHhcCCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCCCHHHHHH
Q 031271          101 AAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQM  155 (162)
Q Consensus       101 ~~~~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~~~~~l~~  155 (162)
                      ++.++++.|+.+|.++++.++++|++ .++||+++|++|+.+.++.|..++.|++
T Consensus        44 ~~~~~~~~~~~vd~~~~~~~~~~~~v-~~~Pt~~~~~~g~~~~~~~G~~~~~~~~   97 (98)
T PTZ00051         44 SKEYTKMVFVKVDVDELSEVAEKENI-TSMPTFKVFKNGSVVDTLLGANDEALKQ   97 (98)
T ss_pred             HHHcCCcEEEEEECcchHHHHHHCCC-ceeeEEEEEeCCeEEEEEeCCCHHHhhc
Confidence            99999999999999999999999999 9999999999999999999998888764

>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions

Probab=99.86  E-value=1.4e-20  Score=129.86  Aligned_cols=93  Identities=26%  Similarity=0.449  Sum_probs=83.7

Q ss_pred             CCceeEeechhhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhhhhhhHHHH
Q 031271           19 TPLVMELQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYVK   98 (162)
Q Consensus        19 ~~~v~~i~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~~~l~   98 (162)
                      .+.+.++++ ++|.+.+.... .++++                                 +|+||++||++|+.+.|.++
T Consensus         3 ~g~v~~i~~-~~f~~~i~~~~-~~~~v---------------------------------vv~F~a~~c~~C~~l~~~l~   47 (113)
T cd02957           3 FGEVREISS-KEFLEEVTKAS-KGTRV---------------------------------VVHFYEPGFPRCKILDSHLE   47 (113)
T ss_pred             CceEEEEcH-HHHHHHHHccC-CCCEE---------------------------------EEEEeCCCCCcHHHHHHHHH
Confidence            567888888 89998886521 24677                                 99999999999999999999


Q ss_pred             HHHHhcCCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC
Q 031271           99 DFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA  148 (162)
Q Consensus        99 ~~~~~~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~  148 (162)
                      +++++|+++.|++||++++ +++++|+| ..+||+++|++|+.+.++.|.
T Consensus        48 ~la~~~~~v~f~~vd~~~~-~l~~~~~i-~~~Pt~~~f~~G~~v~~~~G~   95 (113)
T cd02957          48 ELAAKYPETKFVKINAEKA-FLVNYLDI-KVLPTLLVYKNGELIDNIVGF   95 (113)
T ss_pred             HHHHHCCCcEEEEEEchhh-HHHHhcCC-CcCCEEEEEECCEEEEEEecH
Confidence            9999999999999999999 99999999 999999999999999999874

Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te

>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain

Probab=99.86  E-value=9.3e-21  Score=126.56  Aligned_cols=79  Identities=27%  Similarity=0.466  Sum_probs=74.9

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCC-cEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHHH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQMK  156 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~-v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~~  156 (162)
                      +|+||++||++|+++.|.++++++.+++ +.|+.||++.+++++++|++ .++|++++|++|+.+.++.|. +.+.|+.+
T Consensus        16 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~i-~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~   94 (96)
T cd02956          16 VVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGV-QALPTVYLFAAGQPVDGFQGAQPEEQLRQM   94 (96)
T ss_pred             EEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcCC-CCCCEEEEEeCCEEeeeecCCCCHHHHHHH
Confidence            9999999999999999999999999976 88999999999999999999 999999999999999999998 89999888


Q ss_pred             HH
Q 031271          157 TE  158 (162)
Q Consensus       157 l~  158 (162)
                      |+
T Consensus        95 l~   96 (96)
T cd02956          95 LD   96 (96)
T ss_pred             hC
Confidence            74

Its gene has been sequenced from several gammaproteobacteria and actinobacteria.

>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox

Probab=99.85  E-value=1.2e-20  Score=130.40  Aligned_cols=77  Identities=18%  Similarity=0.275  Sum_probs=71.8

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCC-cEEEEEECCCcHHHH-HhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAA-KAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQM  155 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~-v~f~~vd~d~~~~l~-~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~  155 (162)
                      +|.|||+||++|+.+.|.++++++.+++ +.|++||++++..++ ++|+| .++||+++|++|+...++.|. +.+.|..
T Consensus        33 lV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~~~~~~I-~~~PTl~lf~~g~~~~~y~G~~~~~~i~~  111 (113)
T cd03006          33 LVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKCRKQKHF-FYFPVIHLYYRSRGPIEYKGPMRAPYMEK  111 (113)
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHHHHhcCC-cccCEEEEEECCccceEEeCCCCHHHHHh
Confidence            9999999999999999999999999987 899999999999998 59999 999999999999988888888 8888877


Q ss_pred             H
Q 031271          156 K  156 (162)
Q Consensus       156 ~  156 (162)
                      |
T Consensus       112 ~  112 (113)
T cd03006         112 F  112 (113)
T ss_pred             h
Confidence            5

ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.85  E-value=6.2e-21  Score=148.76  Aligned_cols=110  Identities=25%  Similarity=0.495  Sum_probs=96.5

Q ss_pred             ccCCCceeEeechhhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhhhhhhH
Q 031271           16 HAKTPLVMELQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEP   95 (162)
Q Consensus        16 ~~~~~~v~~i~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~~   95 (162)
                      ....+.+..+++ .+|.+.+-.. ...++|                                 +|+||+|||++|+.+.|
T Consensus        19 ~~~a~~I~dvT~-anfe~~V~~~-S~~~PV---------------------------------lV~fWap~~~~c~qL~p   63 (304)
T COG3118          19 AMAAPGIKDVTE-ANFEQEVIQS-SREVPV---------------------------------LVDFWAPWCGPCKQLTP   63 (304)
T ss_pred             ccccccceechH-hHHHHHHHHH-ccCCCe---------------------------------EEEecCCCCchHHHHHH
Confidence            334555777765 7888887763 234566                                 99999999999999999


Q ss_pred             HHHHHHHhcCC-cEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHHHHHHHh
Q 031271           96 YVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQMKTEKRR  161 (162)
Q Consensus        96 ~l~~~~~~~~~-v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~~l~~~~  161 (162)
                      .|++++.+|.+ +.+.+||+|..+.++.+||| .++||++.|++|+.++.+.|. ..++|++||.++.
T Consensus        64 ~Lekla~~~~G~f~LakvN~D~~p~vAaqfgi-qsIPtV~af~dGqpVdgF~G~qPesqlr~~ld~~~  130 (304)
T COG3118          64 TLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGV-QSIPTVYAFKDGQPVDGFQGAQPESQLRQFLDKVL  130 (304)
T ss_pred             HHHHHHHHhCCceEEEEecCCcchhHHHHhCc-CcCCeEEEeeCCcCccccCCCCcHHHHHHHHHHhc
Confidence            99999999988 99999999999999999999 999999999999999999999 5669999999875

>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44

Probab=99.85  E-value=5.6e-21  Score=129.30  Aligned_cols=78  Identities=18%  Similarity=0.365  Sum_probs=72.6

Q ss_pred             EEEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECC-CcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHH
Q 031271           78 VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVD-WLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQM  155 (162)
Q Consensus        78 vvv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d-~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~  155 (162)
                      |+|+|||+||++|+.+.|.|+++++.++++.|+.||.+ +.+.++++|+| .++||+++|++| .+.++.|. +.+.|.+
T Consensus        21 vlV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~~~~~l~~~~~V-~~~PT~~lf~~g-~~~~~~G~~~~~~l~~   98 (100)
T cd02999          21 TAVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEESSIKPSLLSRYGV-VGFPTILLFNST-PRVRYNGTRTLDSLAA   98 (100)
T ss_pred             EEEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEECCCCCHHHHHhcCC-eecCEEEEEcCC-ceeEecCCCCHHHHHh
Confidence            39999999999999999999999999999999999999 88999999999 999999999999 77888898 8888887


Q ss_pred             HH
Q 031271          156 KT  157 (162)
Q Consensus       156 ~l  157 (162)
                      ||
T Consensus        99 f~  100 (100)
T cd02999          99 FY  100 (100)
T ss_pred             hC
Confidence            74

CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.

>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes

Probab=99.85  E-value=1.7e-20  Score=125.32  Aligned_cols=78  Identities=35%  Similarity=0.711  Sum_probs=74.1

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHh-cCCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCCCHHHHHHHH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAM-YTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQMKT  157 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~-~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~~~~~l~~~l  157 (162)
                      +|+||++||++|+.+.|.|++++++ ++++.|+.+|.++.++++++|++ .++||+++|++|+.+.++.|.++++|.+.|
T Consensus        18 ~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i-~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~~   96 (97)
T cd02984          18 VLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEI-TAVPTFVFFRNGTIVDRVSGADPKELAKKV   96 (97)
T ss_pred             EEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCC-ccccEEEEEECCEEEEEEeCCCHHHHHHhh
Confidence            9999999999999999999999998 55699999999999999999999 999999999999999999999999988876

PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.

>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain

Probab=99.85  E-value=1.4e-20  Score=129.49  Aligned_cols=81  Identities=20%  Similarity=0.274  Sum_probs=76.4

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcC--CcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYT--DVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQM  155 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~--~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~  155 (162)
                      +|+||++||++|+.+.|.++++++.++  ++.|+.||++.++.++++|+| .++||+++|++|+.+.+..|. +.+.|.+
T Consensus        28 lV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V-~~~Pt~~i~~~g~~~~~~~G~~~~~~l~~  106 (111)
T cd02963          28 LIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGA-HSVPAIVGIINGQVTFYHDSSFTKQHVVD  106 (111)
T ss_pred             EEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCC-ccCCEEEEEECCEEEEEecCCCCHHHHHH
Confidence            999999999999999999999999996  489999999999999999999 999999999999999999997 8999999


Q ss_pred             HHHHH
Q 031271          156 KTEKR  160 (162)
Q Consensus       156 ~l~~~  160 (162)
                      +|+++
T Consensus       107 ~i~~~  111 (111)
T cd02963         107 FVRKL  111 (111)
T ss_pred             HHhcC
Confidence            99863

DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.

>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=99.85  E-value=1.8e-20  Score=126.99  Aligned_cols=78  Identities=19%  Similarity=0.385  Sum_probs=72.7

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCC-cEEEEEECCCcHHHHHhcCCCCCccEEEEEcCC-eEEEEEcCC-C-HHHHH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRG-KEIDRVVGA-K-KDELQ  154 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~-v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~G-k~i~~~~g~-~-~~~l~  154 (162)
                      +|+||++||++|+.+.|.++++++++.+ +.|+.+|++++++++++|+| .++||+++|++| +.+.++.|. + .++|.
T Consensus        23 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i-~~~Pt~~~~~~g~~~~~~~~G~~~~~~~l~  101 (104)
T cd03004          23 LVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYESLCQQANI-RAYPTIRLYPGNASKYHSYNGWHRDADSIL  101 (104)
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHHHHHcCC-CcccEEEEEcCCCCCceEccCCCCCHHHHH
Confidence            9999999999999999999999999865 99999999999999999999 999999999887 889999997 6 88888


Q ss_pred             HHH
Q 031271          155 MKT  157 (162)
Q Consensus       155 ~~l  157 (162)
                      +||
T Consensus       102 ~~i  104 (104)
T cd03004         102 EFI  104 (104)
T ss_pred             hhC
Confidence            764

This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.

>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=99.84  E-value=2e-20  Score=126.26  Aligned_cols=77  Identities=13%  Similarity=0.292  Sum_probs=72.4

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCC-cEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHHH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQMK  156 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~-v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~~  156 (162)
                      +|+||++||++|+.+.|.++++++.+++ +.|+.||+++++.++++|+| ..+||+++|++|+.+.++.|. +.+.|.++
T Consensus        22 ~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~~~v-~~~Pt~~~~~~g~~~~~~~G~~~~~~l~~f  100 (101)
T cd03003          22 FVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRSQGV-NSYPSLYVFPSGMNPEKYYGDRSKESLVKF  100 (101)
T ss_pred             EEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHHHHHcCC-CccCEEEEEcCCCCcccCCCCCCHHHHHhh
Confidence            9999999999999999999999999976 89999999999999999999 999999999999998889888 78887765

This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.

>PRK10996 thioredoxin 2; Provisional

Probab=99.84  E-value=1.7e-20  Score=134.03  Aligned_cols=82  Identities=30%  Similarity=0.597  Sum_probs=77.8

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCC-cEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHHH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQMK  156 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~-v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~~  156 (162)
                      +|+||++||++|+.+.|.|+++++++.+ +.|+++|++.+++++++|+| .++||+++|++|+.+.++.|. +.+.|+++
T Consensus        56 vv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~V-~~~Ptlii~~~G~~v~~~~G~~~~e~l~~~  134 (139)
T PRK10996         56 VIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSARFRI-RSIPTIMIFKNGQVVDMLNGAVPKAPFDSW  134 (139)
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHHHhcCC-CccCEEEEEECCEEEEEEcCCCCHHHHHHH
Confidence            9999999999999999999999998865 99999999999999999999 999999999999999999998 89999999


Q ss_pred             HHHHh
Q 031271          157 TEKRR  161 (162)
Q Consensus       157 l~~~~  161 (162)
                      |++++
T Consensus       135 l~~~~  139 (139)
T PRK10996        135 LNEAL  139 (139)
T ss_pred             HHHhC
Confidence            99864

>PRK09381 trxA thioredoxin; Provisional

Probab=99.84  E-value=1.2e-19  Score=123.99  Aligned_cols=83  Identities=30%  Similarity=0.625  Sum_probs=78.6

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCC-cEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHHH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQMK  156 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~-v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~~  156 (162)
                      +|+||++||++|+.+.|.|+++++.+++ +.|+.+|++..+.++++|++ ..+||+++|++|+.+.+..|. +.+.|+.+
T Consensus        25 vv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v-~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~  103 (109)
T PRK09381         25 LVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGI-RGIPTLLLFKNGEVAATKVGALSKGQLKEF  103 (109)
T ss_pred             EEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCC-CcCCEEEEEeCCeEEEEecCCCCHHHHHHH
Confidence            9999999999999999999999999966 89999999999999999999 999999999999999999998 89999999


Q ss_pred             HHHHhC
Q 031271          157 TEKRRN  162 (162)
Q Consensus       157 l~~~~~  162 (162)
                      |.+++.
T Consensus       104 i~~~~~  109 (109)
T PRK09381        104 LDANLA  109 (109)
T ss_pred             HHHhcC
Confidence            998763

>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions

Probab=99.83  E-value=8.7e-20  Score=135.11  Aligned_cols=80  Identities=25%  Similarity=0.331  Sum_probs=72.8

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC--------CH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA--------KK  150 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~--------~~  150 (162)
                      ||+||++||++|+.+.|.|++++++|+.+.|++||++.+ .++.+|++ ..+||+++|++|+.+.++.|.        +.
T Consensus        87 VV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~-~l~~~f~v-~~vPTlllyk~G~~v~~~vG~~~~~g~~f~~  164 (175)
T cd02987          87 VVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASAT-GASDEFDT-DALPALLVYKGGELIGNFVRVTEDLGEDFDA  164 (175)
T ss_pred             EEEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccch-hhHHhCCC-CCCCEEEEEECCEEEEEEechHHhcCCCCCH
Confidence            999999999999999999999999999999999999988 89999999 999999999999999988765        35


Q ss_pred             HHHHHHHHHH
Q 031271          151 DELQMKTEKR  160 (162)
Q Consensus       151 ~~l~~~l~~~  160 (162)
                      +.|+.+|.++
T Consensus       165 ~~le~~L~~~  174 (175)
T cd02987         165 EDLESFLVEY  174 (175)
T ss_pred             HHHHHHHHhc
Confidence            6677777653

It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=99.82  E-value=1.6e-19  Score=123.38  Aligned_cols=78  Identities=22%  Similarity=0.397  Sum_probs=69.4

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhc----C---CcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCe-EEEEEcCC-C
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMY----T---DVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGK-EIDRVVGA-K  149 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~----~---~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk-~i~~~~g~-~  149 (162)
                      +|+||++||++|+++.|.++++++.+    +   .+.|+.||++++++++++|+| .++||+++|++|+ ...++.|. +
T Consensus        22 lv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v-~~~Ptl~~~~~g~~~~~~~~g~~~  100 (108)
T cd02996          22 LVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRI-NKYPTLKLFRNGMMMKREYRGQRS  100 (108)
T ss_pred             EEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCC-CcCCEEEEEeCCcCcceecCCCCC
Confidence            99999999999999999999988764    2   388999999999999999999 9999999999998 44677787 8


Q ss_pred             HHHHHHHH
Q 031271          150 KDELQMKT  157 (162)
Q Consensus       150 ~~~l~~~l  157 (162)
                      .+.|.+||
T Consensus       101 ~~~l~~fi  108 (108)
T cd02996         101 VEALAEFV  108 (108)
T ss_pred             HHHHHhhC
Confidence            88888775

It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.

>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX

Probab=99.82  E-value=3.4e-19  Score=120.10  Aligned_cols=79  Identities=29%  Similarity=0.497  Sum_probs=72.4

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcC--CcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYT--DVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQM  155 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~--~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~  155 (162)
                      +|+||++||++|+.+.|.|+++++.++  ++.|..+|+++++.++++|+| .++||+++|++|+. .++.|. +.+.|..
T Consensus        20 lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i-~~~Pt~~~~~~g~~-~~~~G~~~~~~l~~   97 (101)
T cd02994          20 MIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFV-TALPTIYHAKDGVF-RRYQGPRDKEDLIS   97 (101)
T ss_pred             EEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCC-cccCEEEEeCCCCE-EEecCCCCHHHHHH
Confidence            899999999999999999999998875  489999999999999999999 99999999999985 677887 8999999


Q ss_pred             HHHH
Q 031271          156 KTEK  159 (162)
Q Consensus       156 ~l~~  159 (162)
                      +|++
T Consensus        98 ~i~~  101 (101)
T cd02994          98 FIEE  101 (101)
T ss_pred             HHhC
Confidence            8864

TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.

>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains

Probab=99.81  E-value=5.1e-19  Score=118.71  Aligned_cols=82  Identities=27%  Similarity=0.490  Sum_probs=75.7

Q ss_pred             ceEEEEEecCCChhhhhhhHHHHHHHHhcCC-cEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHH
Q 031271           76 LKVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDEL  153 (162)
Q Consensus        76 k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~-v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l  153 (162)
                      ++|+++||++||+.|+.+.|.++++.+++++ +.++.+|+++.++++.++++ .++|++++|++|+.+.++.|. +.+.|
T Consensus        14 ~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v-~~vPt~~i~~~g~~v~~~~g~~~~~~~   92 (97)
T cd02949          14 RLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGI-MGTPTVQFFKDKELVKEISGVKMKSEY   92 (97)
T ss_pred             CeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCC-eeccEEEEEECCeEEEEEeCCccHHHH
Confidence            4449999999999999999999999999975 99999999999999999999 999999999999999999998 78888


Q ss_pred             HHHHH
Q 031271          154 QMKTE  158 (162)
Q Consensus       154 ~~~l~  158 (162)
                      .++|+
T Consensus        93 ~~~l~   97 (97)
T cd02949          93 REFIE   97 (97)
T ss_pred             HHhhC
Confidence            88763

The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.

>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO

Probab=99.81  E-value=4.9e-19  Score=121.28  Aligned_cols=75  Identities=11%  Similarity=0.130  Sum_probs=70.9

Q ss_pred             EEEEecCC--ChhhhhhhHHHHHHHHhcCC-cEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHH
Q 031271           79 VIYYTAAW--CGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQ  154 (162)
Q Consensus        79 vv~F~a~w--C~~C~~~~~~l~~~~~~~~~-v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~  154 (162)
                      +|.||++|  |++|+.+.|.|++++++|++ +.|+++|++++++++.+|+| .++||+++|++|+.+.++.|. +.+++.
T Consensus        31 v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~la~~f~V-~sIPTli~fkdGk~v~~~~G~~~~~e~~  109 (111)
T cd02965          31 VLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQALAARFGV-LRTPALLFFRDGRYVGVLAGIRDWDEYV  109 (111)
T ss_pred             EEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHHHHHHcCC-CcCCEEEEEECCEEEEEEeCccCHHHHh
Confidence            89999997  99999999999999999988 88999999999999999999 999999999999999999998 666664

They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.

>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus

Probab=99.81  E-value=6.5e-19  Score=126.32  Aligned_cols=84  Identities=25%  Similarity=0.525  Sum_probs=75.4

Q ss_pred             eEEEEEecCCChhhhhhhHHHHHHHHhcCC-cEEEEEECCCc--HHHHHhcCCCCCccEEEEE-cCCeEEEEEcCC-CHH
Q 031271           77 KVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWL--PEAAKAFDLIDVLPTFVLV-KRGKEIDRVVGA-KKD  151 (162)
Q Consensus        77 ~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~-v~f~~vd~d~~--~~l~~~~~i~~~~Ptiv~~-~~Gk~i~~~~g~-~~~  151 (162)
                      +++|+||++||++|+.+.|.++++++.|.+ +.|+.|+++..  ..++++|+| .++||+++| ++|+++.++.|. +.+
T Consensus        22 ~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V-~~iPt~v~~~~~G~~v~~~~G~~~~~  100 (142)
T cd02950          22 PTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRV-DGIPHFVFLDREGNEEGQSIGLQPKQ  100 (142)
T ss_pred             EEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCC-CCCCEEEEECCCCCEEEEEeCCCCHH
Confidence            339999999999999999999999999975 78888888854  588999999 999999999 589999999999 788


Q ss_pred             HHHHHHHHHh
Q 031271          152 ELQMKTEKRR  161 (162)
Q Consensus       152 ~l~~~l~~~~  161 (162)
                      .|+++|++++
T Consensus       101 ~l~~~l~~l~  110 (142)
T cd02950         101 VLAQNLDALV  110 (142)
T ss_pred             HHHHHHHHHH
Confidence            8999998875

It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.

>TIGR01068 thioredoxin thioredoxin

Probab=99.80  E-value=1.3e-18  Score=116.25  Aligned_cols=82  Identities=40%  Similarity=0.808  Sum_probs=77.2

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCC-cEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHHH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQMK  156 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~-v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~~  156 (162)
                      +|+||++||++|+.+.+.++++.+.+++ +.|+.+|++.++.++++|++ ..+|++++|++|+.+.+..|. +.+.|..+
T Consensus        18 vi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v-~~~P~~~~~~~g~~~~~~~g~~~~~~l~~~   96 (101)
T TIGR01068        18 LVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGI-RSIPTLLLFKNGKEVDRSVGALPKAALKQL   96 (101)
T ss_pred             EEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCC-CcCCEEEEEeCCcEeeeecCCCCHHHHHHH
Confidence            9999999999999999999999988875 99999999999999999999 999999999999999999898 78999999


Q ss_pred             HHHHh
Q 031271          157 TEKRR  161 (162)
Q Consensus       157 l~~~~  161 (162)
                      |++++
T Consensus        97 l~~~~  101 (101)
T TIGR01068        97 INKNL  101 (101)
T ss_pred             HHhhC
Confidence            98763

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.

>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library

Probab=99.79  E-value=2e-18  Score=125.01  Aligned_cols=93  Identities=22%  Similarity=0.431  Sum_probs=80.8

Q ss_pred             CCceeEeechhhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhhhhhhHHHH
Q 031271           19 TPLVMELQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYVK   98 (162)
Q Consensus        19 ~~~v~~i~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~~~l~   98 (162)
                      ...+..++ .++|++.+..  ..++++                                 +|+||++||++|+.+.|.++
T Consensus        27 ~~~v~~l~-~~~f~~~l~~--~~~~~v---------------------------------vV~Fya~wC~~Ck~l~p~l~   70 (152)
T cd02962          27 PEHIKYFT-PKTLEEELER--DKRVTW---------------------------------LVEFFTTWSPECVNFAPVFA   70 (152)
T ss_pred             CCccEEcC-HHHHHHHHHh--cCCCEE---------------------------------EEEEECCCCHHHHHHHHHHH
Confidence            45666665 4778887754  235677                                 99999999999999999999


Q ss_pred             HHHHhcC--CcEEEEEECCCcHHHHHhcCCCCC------ccEEEEEcCCeEEEEEcCC
Q 031271           99 DFAAMYT--DVQFIKIDVDWLPEAAKAFDLIDV------LPTFVLVKRGKEIDRVVGA  148 (162)
Q Consensus        99 ~~~~~~~--~v~f~~vd~d~~~~l~~~~~i~~~------~Ptiv~~~~Gk~i~~~~g~  148 (162)
                      +++++++  ++.|++||++++++++++|+| ..      +||+++|++|+.+.++.|+
T Consensus        71 ~la~~~~~~~v~f~~VDvd~~~~la~~~~V-~~~~~v~~~PT~ilf~~Gk~v~r~~G~  127 (152)
T cd02962          71 ELSLKYNNNNLKFGKIDIGRFPNVAEKFRV-STSPLSKQLPTIILFQGGKEVARRPYY  127 (152)
T ss_pred             HHHHHcccCCeEEEEEECCCCHHHHHHcCc-eecCCcCCCCEEEEEECCEEEEEEecc
Confidence            9999986  399999999999999999999 88      9999999999999999973

It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.

>PTZ00443 Thioredoxin domain-containing protein; Provisional

Probab=99.79  E-value=1.8e-18  Score=132.39  Aligned_cols=108  Identities=19%  Similarity=0.322  Sum_probs=93.1

Q ss_pred             CCceeEeechhhHHHHHHhhh-cccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhhhhhhHHH
Q 031271           19 TPLVMELQSKHQWRSQYEASK-QSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYV   97 (162)
Q Consensus        19 ~~~v~~i~s~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~~~l   97 (162)
                      .+.|..++ .++|++.+.... ..++++                                 +|+||++||++|+.+.|.+
T Consensus        29 ~~~Vv~Lt-~~nF~~~v~~~~~~~~~~v---------------------------------lV~FyApWC~~Ck~~~P~~   74 (224)
T PTZ00443         29 ANALVLLN-DKNFEKLTQASTGATTGPW---------------------------------FVKFYAPWCSHCRKMAPAW   74 (224)
T ss_pred             CCCcEECC-HHHHHHHHhhhcccCCCCE---------------------------------EEEEECCCChHHHHHHHHH
Confidence            45677774 578888775432 124566                                 9999999999999999999


Q ss_pred             HHHHHhcCC-cEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHHHHHHHh
Q 031271           98 KDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQMKTEKRR  161 (162)
Q Consensus        98 ~~~~~~~~~-v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~~l~~~~  161 (162)
                      +++++++++ +.|..+|++++++++++|+| .++||+++|++|+.+.+..|. +.+.|.+++.+..
T Consensus        75 e~la~~~~~~v~~~~VD~~~~~~l~~~~~I-~~~PTl~~f~~G~~v~~~~G~~s~e~L~~fi~~~~  139 (224)
T PTZ00443         75 ERLAKALKGQVNVADLDATRALNLAKRFAI-KGYPTLLLFDKGKMYQYEGGDRSTEKLAAFALGDF  139 (224)
T ss_pred             HHHHHHcCCCeEEEEecCcccHHHHHHcCC-CcCCEEEEEECCEEEEeeCCCCCHHHHHHHHHHHH
Confidence            999999987 89999999999999999999 999999999999999988886 8999999988764

>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein

Probab=99.79  E-value=1.4e-18  Score=118.28  Aligned_cols=78  Identities=21%  Similarity=0.385  Sum_probs=70.3

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCC-cEEEEEECCC--cHHHHHhcCCCCCccEEEEEcCCe-----EEEEEcCC-C
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDW--LPEAAKAFDLIDVLPTFVLVKRGK-----EIDRVVGA-K  149 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~-v~f~~vd~d~--~~~l~~~~~i~~~~Ptiv~~~~Gk-----~i~~~~g~-~  149 (162)
                      +|+||++||++|+.+.|.++++++.+.+ +.|+.+|++.  +++++++|++ .++||+++|++|+     ....+.|. +
T Consensus        22 lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i-~~~Pt~~~~~~~~~~~~~~~~~~~G~~~  100 (109)
T cd03002          22 LVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGV-QGFPTLKVFRPPKKASKHAVEDYNGERS  100 (109)
T ss_pred             EEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCC-CcCCEEEEEeCCCcccccccccccCccC
Confidence            9999999999999999999999999876 8899999998  8899999999 9999999998775     45666777 8


Q ss_pred             HHHHHHHH
Q 031271          150 KDELQMKT  157 (162)
Q Consensus       150 ~~~l~~~l  157 (162)
                      .+.|.+||
T Consensus       101 ~~~l~~fi  108 (109)
T cd03002         101 AKAIVDFV  108 (109)
T ss_pred             HHHHHHHh
Confidence            88998887

MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.

>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding

Probab=99.79  E-value=2e-18  Score=119.24  Aligned_cols=82  Identities=17%  Similarity=0.316  Sum_probs=73.7

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEE--EEcCC-CHHHHHH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEID--RVVGA-KKDELQM  155 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~--~~~g~-~~~~l~~  155 (162)
                      +|+||++||++|+.+.|.+++++..++.+.|..+|++++++++.+|++ ..+||+++|++|+...  ++.|. +..+|.+
T Consensus        26 vv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~~~~l~~~~~v-~~vPt~~i~~~g~~~~~~~~~G~~~~~el~~  104 (113)
T cd02975          26 VVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDEDKEKAEKYGV-ERVPTTIFLQDGGKDGGIRYYGLPAGYEFAS  104 (113)
T ss_pred             EEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCcCHHHHHHcCC-CcCCEEEEEeCCeecceEEEEecCchHHHHH
Confidence            899999999999999999999999887799999999999999999999 9999999998765443  67787 7889999


Q ss_pred             HHHHHh
Q 031271          156 KTEKRR  161 (162)
Q Consensus       156 ~l~~~~  161 (162)
                      +|...+
T Consensus       105 ~i~~i~  110 (113)
T cd02975         105 LIEDIV  110 (113)
T ss_pred             HHHHHH
Confidence            988765

PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.

>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains

Probab=99.79  E-value=1.1e-18  Score=117.32  Aligned_cols=78  Identities=28%  Similarity=0.574  Sum_probs=72.1

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcC----CcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYT----DVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDEL  153 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~----~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l  153 (162)
                      +|+||++||++|+.+.|.++++++++.    ++.|+.+|++.++.++++|++ ..+||+++|++|+.+.++.|. +.+.|
T Consensus        20 lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v-~~~Pt~~~~~~g~~~~~~~G~~~~~~l   98 (102)
T cd03005          20 FVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQV-RGYPTLLLFKDGEKVDKYKGTRDLDSL   98 (102)
T ss_pred             EEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCC-CcCCEEEEEeCCCeeeEeeCCCCHHHH
Confidence            999999999999999999999998885    489999999999999999999 999999999999998889998 88888


Q ss_pred             HHHH
Q 031271          154 QMKT  157 (162)
Q Consensus       154 ~~~l  157 (162)
                      +++|
T Consensus        99 ~~~i  102 (102)
T cd03005          99 KEFV  102 (102)
T ss_pred             HhhC
Confidence            7764

Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.

>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=99.78  E-value=3.6e-18  Score=115.08  Aligned_cols=78  Identities=19%  Similarity=0.437  Sum_probs=71.7

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcC--C-cEEEEEECCC--cHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYT--D-VQFIKIDVDW--LPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDE  152 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~--~-v~f~~vd~d~--~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~  152 (162)
                      +|+||++||++|+.+.|.++++++.++  + +.++.+|++.  ++.++++|++ .++||+++|++|+.+.++.|. +.+.
T Consensus        21 ~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i-~~~Pt~~~~~~g~~~~~~~g~~~~~~   99 (104)
T cd02997          21 LVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNV-KGFPTFKYFENGKFVEKYEGERTAED   99 (104)
T ss_pred             EEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCC-ccccEEEEEeCCCeeEEeCCCCCHHH
Confidence            999999999999999999999998875  3 8899999998  9999999999 999999999999999999988 8888


Q ss_pred             HHHHH
Q 031271          153 LQMKT  157 (162)
Q Consensus       153 l~~~l  157 (162)
                      |.+||
T Consensus       100 l~~~l  104 (104)
T cd02997         100 IIEFM  104 (104)
T ss_pred             HHhhC
Confidence            88764

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.

>TIGR01126 pdi_dom protein disulfide-isomerase domain

Probab=99.78  E-value=1.1e-18  Score=116.94  Aligned_cols=83  Identities=22%  Similarity=0.434  Sum_probs=75.5

Q ss_pred             EEEEEecCCChhhhhhhHHHHHHHHhcCC---cEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHH
Q 031271           78 VVIYYTAAWCGPCKFIEPYVKDFAAMYTD---VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDEL  153 (162)
Q Consensus        78 vvv~F~a~wC~~C~~~~~~l~~~~~~~~~---v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l  153 (162)
                      ++|+||++||++|+.+.+.++++++.+.+   +.++.+|++.++.++++|++ .++|++++|++|+.+.++.|. +.++|
T Consensus        16 ~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i-~~~P~~~~~~~~~~~~~~~g~~~~~~l   94 (102)
T TIGR01126        16 VLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGV-SGFPTIKFFPKGKKPVDYEGGRDLEAI   94 (102)
T ss_pred             EEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCC-CcCCEEEEecCCCcceeecCCCCHHHH
Confidence            39999999999999999999999998874   99999999999999999999 999999999877757778887 89999


Q ss_pred             HHHHHHHh
Q 031271          154 QMKTEKRR  161 (162)
Q Consensus       154 ~~~l~~~~  161 (162)
                      +.+|++++
T Consensus        95 ~~~i~~~~  102 (102)
T TIGR01126        95 VEFVNEKS  102 (102)
T ss_pred             HHHHHhcC
Confidence            99999863

This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.

>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD

Probab=99.78  E-value=9.1e-19  Score=118.74  Aligned_cols=79  Identities=28%  Similarity=0.407  Sum_probs=71.1

Q ss_pred             EEEEecCCChhhhhhhHHH---HHHHHhcC-CcEEEEEECCC----cHHHHHhcCCCCCccEEEEEc--CCeEEEEEcCC
Q 031271           79 VIYYTAAWCGPCKFIEPYV---KDFAAMYT-DVQFIKIDVDW----LPEAAKAFDLIDVLPTFVLVK--RGKEIDRVVGA  148 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l---~~~~~~~~-~v~f~~vd~d~----~~~l~~~~~i~~~~Ptiv~~~--~Gk~i~~~~g~  148 (162)
                      +|+||++||++|+++.+.+   +++.+.+. ++.++.+|+++    .++++++|++ .++||+++|+  +|+.+.++.|.
T Consensus        15 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i-~~~Pti~~~~~~~g~~~~~~~G~   93 (104)
T cd02953          15 FVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGV-FGPPTYLFYGPGGEPEPLRLPGF   93 (104)
T ss_pred             EEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCC-CCCCEEEEECCCCCCCCcccccc
Confidence            9999999999999999987   67887777 59999999987    6789999999 9999999996  89999999998


Q ss_pred             -CHHHHHHHHH
Q 031271          149 -KKDELQMKTE  158 (162)
Q Consensus       149 -~~~~l~~~l~  158 (162)
                       +.++|+++|+
T Consensus        94 ~~~~~l~~~l~  104 (104)
T cd02953          94 LTADEFLEALE  104 (104)
T ss_pred             cCHHHHHHHhC
Confidence             8999988874

It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.

>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation

Probab=99.77  E-value=4.5e-18  Score=119.02  Aligned_cols=82  Identities=22%  Similarity=0.355  Sum_probs=70.2

Q ss_pred             EEEEecCCChhhhhhhHHHH---HHHHhcC-CcEEEEEECCCc-------------HHHHHhcCCCCCccEEEEEc-C-C
Q 031271           79 VIYYTAAWCGPCKFIEPYVK---DFAAMYT-DVQFIKIDVDWL-------------PEAAKAFDLIDVLPTFVLVK-R-G  139 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~---~~~~~~~-~v~f~~vd~d~~-------------~~l~~~~~i~~~~Ptiv~~~-~-G  139 (162)
                      +|+||++||++|+.+.+.+.   .+.+.+. ++.++.+|++..             .+++.+|++ .++||++++. + |
T Consensus        18 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v-~~~Pt~~~~~~~gg   96 (125)
T cd02951          18 LLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRV-RFTPTVIFLDPEGG   96 (125)
T ss_pred             EEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCC-ccccEEEEEcCCCC
Confidence            99999999999999999874   5555554 488999999864             689999999 9999999995 5 7


Q ss_pred             eEEEEEcCC-CHHHHHHHHHHHh
Q 031271          140 KEIDRVVGA-KKDELQMKTEKRR  161 (162)
Q Consensus       140 k~i~~~~g~-~~~~l~~~l~~~~  161 (162)
                      +++.++.|. +.+.+.++|+...
T Consensus        97 ~~~~~~~G~~~~~~~~~~l~~~~  119 (125)
T cd02951          97 KEIARLPGYLPPDEFLAYLEYVQ  119 (125)
T ss_pred             ceeEEecCCCCHHHHHHHHHHHH
Confidence            999999998 7888988888764

Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.

>PTZ00062 glutaredoxin; Provisional

Probab=99.77  E-value=4e-18  Score=128.69  Aligned_cols=74  Identities=9%  Similarity=0.139  Sum_probs=71.5

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCCCHHHHHHHHH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQMKTE  158 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~~~~~l~~~l~  158 (162)
                      +++|||+||++|+.+.|.+++++++|+++.|+.||.+        |+| .++||+++|++|+.+.|+.|.++.+|...++
T Consensus        21 vl~f~a~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d--------~~V-~~vPtfv~~~~g~~i~r~~G~~~~~~~~~~~   91 (204)
T PTZ00062         21 VLYVKSSKEPEYEQLMDVCNALVEDFPSLEFYVVNLA--------DAN-NEYGVFEFYQNSQLINSLEGCNTSTLVSFIR   91 (204)
T ss_pred             EEEEeCCCCcchHHHHHHHHHHHHHCCCcEEEEEccc--------cCc-ccceEEEEEECCEEEeeeeCCCHHHHHHHHH
Confidence            8999999999999999999999999999999999988        999 9999999999999999999999999999998


Q ss_pred             HHh
Q 031271          159 KRR  161 (162)
Q Consensus       159 ~~~  161 (162)
                      ++.
T Consensus        92 ~~~   94 (204)
T PTZ00062         92 GWA   94 (204)
T ss_pred             HHc
Confidence            875

>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus

Probab=99.77  E-value=4.4e-18  Score=115.49  Aligned_cols=80  Identities=26%  Similarity=0.441  Sum_probs=71.5

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcC----CcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYT----DVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDEL  153 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~----~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l  153 (162)
                      +|+||++||++|+.+.|.|+++++.+.    ++.+..+|++..+.++++|+| .++||+++|++|.. .++.|. +.+.|
T Consensus        19 lv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I-~~~Pt~~l~~~~~~-~~~~G~~~~~~l   96 (104)
T cd03000          19 LVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGV-RGYPTIKLLKGDLA-YNYRGPRTKDDI   96 (104)
T ss_pred             EEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCC-ccccEEEEEcCCCc-eeecCCCCHHHH
Confidence            999999999999999999999999873    388999999999999999999 99999999987754 557777 89999


Q ss_pred             HHHHHHH
Q 031271          154 QMKTEKR  160 (162)
Q Consensus       154 ~~~l~~~  160 (162)
                      ..++++.
T Consensus        97 ~~~~~~~  103 (104)
T cd03000          97 VEFANRV  103 (104)
T ss_pred             HHHHHhh
Confidence            9998864

The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.

>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis

Probab=99.76  E-value=1.1e-17  Score=125.55  Aligned_cols=77  Identities=17%  Similarity=0.337  Sum_probs=69.9

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC--------CH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA--------KK  150 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~--------~~  150 (162)
                      ||+||++||++|+.+.|.|++++++|+++.|++||++..   ...|++ ..+||+++|++|+.+.++.|.        +.
T Consensus       106 VV~Fya~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad~~---~~~~~i-~~lPTlliyk~G~~v~~ivG~~~~gg~~~~~  181 (192)
T cd02988         106 VVHLYKDGIPLCRLLNQHLSELARKFPDTKFVKIISTQC---IPNYPD-KNLPTILVYRNGDIVKQFIGLLEFGGMNTTM  181 (192)
T ss_pred             EEEEECCCCchHHHHHHHHHHHHHHCCCCEEEEEEhHHh---HhhCCC-CCCCEEEEEECCEEEEEEeCchhhCCCCCCH
Confidence            999999999999999999999999999999999999864   579999 999999999999999999864        46


Q ss_pred             HHHHHHHHH
Q 031271          151 DELQMKTEK  159 (162)
Q Consensus       151 ~~l~~~l~~  159 (162)
                      +.|+.+|.+
T Consensus       182 ~~lE~~L~~  190 (192)
T cd02988         182 EDLEWLLVQ  190 (192)
T ss_pred             HHHHHHHHh
Confidence            777777764

It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=99.76  E-value=1.3e-17  Score=112.31  Aligned_cols=78  Identities=22%  Similarity=0.407  Sum_probs=70.3

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCC-cEEEEEECCCcHHHHHhcCCCCCccEEEEEcCC-eEEEEEcCC-CHHHHHH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRG-KEIDRVVGA-KKDELQM  155 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~-v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~G-k~i~~~~g~-~~~~l~~  155 (162)
                      +|+||++||++|+.+.|.|.++++.+++ +.|+.+|++++++++++|++ .++|++++|++| +....+.|. +.+.|.+
T Consensus        22 lv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i-~~~P~~~~~~~~~~~~~~~~g~~~~~~l~~  100 (103)
T cd03001          22 LVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQQYGV-RGFPTIKVFGAGKNSPQDYQGGRTAKAIVS  100 (103)
T ss_pred             EEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHHHCCC-CccCEEEEECCCCcceeecCCCCCHHHHHH
Confidence            9999999999999999999999998865 99999999999999999999 999999999888 445566666 8888888


Q ss_pred             HH
Q 031271          156 KT  157 (162)
Q Consensus       156 ~l  157 (162)
                      |+
T Consensus       101 ~~  102 (103)
T cd03001         101 AA  102 (103)
T ss_pred             Hh
Confidence            75

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.

>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative

Probab=99.74  E-value=3.6e-17  Score=114.49  Aligned_cols=79  Identities=22%  Similarity=0.291  Sum_probs=66.0

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcH-----------HHHHhcCC---CCCccEEEEEcCCeEEEE
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLP-----------EAAKAFDL---IDVLPTFVLVKRGKEIDR  144 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~-----------~l~~~~~i---~~~~Ptiv~~~~Gk~i~~  144 (162)
                      +|+|+++|||+|+.+.|.|+++.++ .++.++.||++.+.           ++.++|++   ..++||+++|++|+.+.+
T Consensus        27 iv~f~~~~Cp~C~~~~P~l~~~~~~-~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~~PT~v~~k~Gk~v~~  105 (122)
T TIGR01295        27 TFFIGRKTCPYCRKFSGTLSGVVAQ-TKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMGTPTFVHITDGKQVSV  105 (122)
T ss_pred             EEEEECCCChhHHHHhHHHHHHHHh-cCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCCCCEEEEEeCCeEEEE
Confidence            8999999999999999999999998 45778888887542           56677664   055999999999999999


Q ss_pred             EcCC--CHHHHHHHHH
Q 031271          145 VVGA--KKDELQMKTE  158 (162)
Q Consensus       145 ~~g~--~~~~l~~~l~  158 (162)
                      ..|.  +.++|.+++.
T Consensus       106 ~~G~~~~~~~l~~~~~  121 (122)
T TIGR01295       106 RCGSSTTAQELQDIAA  121 (122)
T ss_pred             EeCCCCCHHHHHHHhh
Confidence            9994  6888888763

This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.

>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1

Probab=99.73  E-value=4.6e-17  Score=109.53  Aligned_cols=77  Identities=23%  Similarity=0.466  Sum_probs=68.3

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCC---cEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCe--EEEEEcCC-CHHH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTD---VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGK--EIDRVVGA-KKDE  152 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~---v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk--~i~~~~g~-~~~~  152 (162)
                      +|+||++||++|+.+.|.++++++.+++   +.|+.+|++.+ +++..+++ .++|++++|++|+  ...++.|. +.+.
T Consensus        22 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~-~~~Pt~~~~~~~~~~~~~~~~g~~~~~~   99 (104)
T cd02995          22 LVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-DVPSEFVV-DGFPTILFFPAGDKSNPIKYEGDRTLED   99 (104)
T ss_pred             EEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-hhhhhccC-CCCCEEEEEcCCCcCCceEccCCcCHHH
Confidence            9999999999999999999999998865   89999999987 68889999 9999999998887  56667777 8888


Q ss_pred             HHHHH
Q 031271          153 LQMKT  157 (162)
Q Consensus       153 l~~~l  157 (162)
                      |.+||
T Consensus       100 l~~fi  104 (104)
T cd02995         100 LIKFI  104 (104)
T ss_pred             HHhhC
Confidence            87764

PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu

>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases

Probab=99.72  E-value=7.7e-17  Score=110.39  Aligned_cols=78  Identities=23%  Similarity=0.400  Sum_probs=66.4

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCC--cEEEEEECCC-cHHHHH-hcCCCCCccEEEEEcCC-eEEEEEcC-C-CHH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTD--VQFIKIDVDW-LPEAAK-AFDLIDVLPTFVLVKRG-KEIDRVVG-A-KKD  151 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~--v~f~~vd~d~-~~~l~~-~~~i~~~~Ptiv~~~~G-k~i~~~~g-~-~~~  151 (162)
                      +|.||++||++|+++.|.|+++++.+.+  +.++.||++. ...++. .|++ ..+||+++|++| +....+.| . +.+
T Consensus        25 lv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v-~~~Pti~~f~~~~~~~~~y~g~~~~~~  103 (109)
T cd02993          25 LVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQL-KSFPTILFFPKNSRQPIKYPSEQRDVD  103 (109)
T ss_pred             EEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCC-CcCCEEEEEcCCCCCceeccCCCCCHH
Confidence            9999999999999999999999998864  8999999997 567776 5999 999999999654 56666777 3 788


Q ss_pred             HHHHHH
Q 031271          152 ELQMKT  157 (162)
Q Consensus       152 ~l~~~l  157 (162)
                      .|..||
T Consensus       104 ~l~~f~  109 (109)
T cd02993         104 SLLMFV  109 (109)
T ss_pred             HHHhhC
Confidence            887764

APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red

>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

Probab=99.72  E-value=1.3e-16  Score=103.80  Aligned_cols=80  Identities=48%  Similarity=0.888  Sum_probs=74.4

Q ss_pred             eEEEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHH
Q 031271           77 KVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQM  155 (162)
Q Consensus        77 ~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~  155 (162)
                      +++|+||++||++|+.+.+.++++.+..+++.|+.+|++..+.+++.|++ .++|++++|++|+.+..+.|. +.+.|.+
T Consensus        12 ~~ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v-~~~P~~~~~~~g~~~~~~~g~~~~~~l~~   90 (93)
T cd02947          12 PVVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDENPELAEEYGV-RSIPTFLFFKNGKEVDRVVGADPKEELEE   90 (93)
T ss_pred             cEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCCChhHHHhcCc-ccccEEEEEECCEEEEEEecCCCHHHHHH
Confidence            34999999999999999999999999877899999999999999999999 999999999999999999998 6788888


Q ss_pred             HH
Q 031271          156 KT  157 (162)
Q Consensus       156 ~l  157 (162)
                      +|
T Consensus        91 ~i   92 (93)
T cd02947          91 FL   92 (93)
T ss_pred             Hh
Confidence            76

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio

>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5

Probab=99.72  E-value=6.9e-17  Score=108.74  Aligned_cols=78  Identities=28%  Similarity=0.551  Sum_probs=69.7

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcC---CcEEEEEECCC-cHHHHHhcCCCCCccEEEEEcCC-eEEEEEcCC-CHHH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYT---DVQFIKIDVDW-LPEAAKAFDLIDVLPTFVLVKRG-KEIDRVVGA-KKDE  152 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~---~v~f~~vd~d~-~~~l~~~~~i~~~~Ptiv~~~~G-k~i~~~~g~-~~~~  152 (162)
                      +|+||++||++|+.+.|.++++++.++   ++.|+.+|++. ++.++++|++ .++|++++|++| +....+.|. +.++
T Consensus        22 ~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i-~~~P~~~~~~~~~~~~~~~~g~~~~~~  100 (105)
T cd02998          22 LVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGV-SGFPTLKFFPKGSTEPVKYEGGRDLED  100 (105)
T ss_pred             EEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCC-CCcCEEEEEeCCCCCccccCCccCHHH
Confidence            999999999999999999999999886   39999999999 9999999999 999999999655 666677776 8888


Q ss_pred             HHHHH
Q 031271          153 LQMKT  157 (162)
Q Consensus       153 l~~~l  157 (162)
                      |.+||
T Consensus       101 l~~~i  105 (105)
T cd02998         101 LVKFV  105 (105)
T ss_pred             HHhhC
Confidence            88774

The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER

>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1

Probab=99.70  E-value=1.4e-16  Score=110.84  Aligned_cols=98  Identities=18%  Similarity=0.258  Sum_probs=79.4

Q ss_pred             EeechhhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEec-------CCChhhhhhhHH
Q 031271           24 ELQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTA-------AWCGPCKFIEPY   96 (162)
Q Consensus        24 ~i~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a-------~wC~~C~~~~~~   96 (162)
                      .+.+.++|.+.+...  +++++                                 +|+|||       +||++|+.+.|.
T Consensus         5 ~~~~~~~f~~~i~~~--~~~~v---------------------------------vV~F~A~~~~~~~~WC~pCr~~~P~   49 (119)
T cd02952           5 AVRGYEEFLKLLKSH--EGKPI---------------------------------FILFYGDKDPDGQSWCPDCVKAEPV   49 (119)
T ss_pred             cccCHHHHHHHHHhc--CCCeE---------------------------------EEEEEccCCCCCCCCCHhHHhhchh
Confidence            456777888887652  35677                                 999999       999999999999


Q ss_pred             HHHHHHhcC-CcEEEEEECCC-------cHHHHHhcCCCC-CccEEEEEcCCeEEEEEcCCCHHHHHHHH
Q 031271           97 VKDFAAMYT-DVQFIKIDVDW-------LPEAAKAFDLID-VLPTFVLVKRGKEIDRVVGAKKDELQMKT  157 (162)
Q Consensus        97 l~~~~~~~~-~v~f~~vd~d~-------~~~l~~~~~i~~-~~Ptiv~~~~Gk~i~~~~g~~~~~l~~~l  157 (162)
                      ++++..+++ ++.|+.||+++       +.+++..|+| . ++||+++|++|+.+....-.+.+.+..++
T Consensus        50 l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I-~~~iPT~~~~~~~~~l~~~~c~~~~~~~~~~  118 (119)
T cd02952          50 VREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKL-TTGVPTLLRWKTPQRLVEDECLQADLVEMFF  118 (119)
T ss_pred             HHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCc-ccCCCEEEEEcCCceecchhhcCHHHHHHhh
Confidence            999999998 59999999976       4689999999 9 99999999888655443333666666554

TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.

>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=99.70  E-value=1.3e-16  Score=105.83  Aligned_cols=78  Identities=24%  Similarity=0.415  Sum_probs=70.9

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhc---CCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCC-eEEEEEcCC-CHHHH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMY---TDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRG-KEIDRVVGA-KKDEL  153 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~---~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~G-k~i~~~~g~-~~~~l  153 (162)
                      +|+||++||++|+.+.+.++++++.+   .++.|+.+|++.++.++++|++ ..+|++++|++| +...++.|. +.+.+
T Consensus        19 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i-~~~Pt~~~~~~~~~~~~~~~g~~~~~~i   97 (101)
T cd02961          19 LVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGV-RGYPTIKLFPNGSKEPVKYEGPRTLESL   97 (101)
T ss_pred             EEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCC-CCCCEEEEEcCCCcccccCCCCcCHHHH
Confidence            99999999999999999999999988   3599999999999999999999 999999999766 788888887 78888


Q ss_pred             HHHH
Q 031271          154 QMKT  157 (162)
Q Consensus       154 ~~~l  157 (162)
                      .+|+
T Consensus        98 ~~~~  101 (101)
T cd02961          98 VEFI  101 (101)
T ss_pred             HhhC
Confidence            7764

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies

>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional

Probab=99.69  E-value=5.2e-16  Score=131.04  Aligned_cols=103  Identities=17%  Similarity=0.245  Sum_probs=87.7

Q ss_pred             ccccceeEEecCCCeeeeeC-ceEEEEEecCCChhhhhhhHHHHHHHHhcC--CcEEEEEE-------------------
Q 031271           56 YCINEMVLNINDGGNVVFWV-LKVVIYYTAAWCGPCKFIEPYVKDFAAMYT--DVQFIKID-------------------  113 (162)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~-k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~--~v~f~~vd-------------------  113 (162)
                      ...|++.+.+.+|+.+..+. |+|+|+|||+||++|+.+.|.|+++.++++  ++.|+.|.                   
T Consensus        36 ~~lP~f~l~D~dG~~v~lskGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~  115 (521)
T PRK14018         36 HTLSTLKTADNRPASVYLKKDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAG  115 (521)
T ss_pred             CCCCCeEeecCCCceeeccCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHh
Confidence            35789999999999776544 899999999999999999999999999886  46665543                   


Q ss_pred             ---------CCCcHHHHHhcCCCCCccEEEEE-cCCeEEEEEcCC-CHHHHHHHHHH
Q 031271          114 ---------VDWLPEAAKAFDLIDVLPTFVLV-KRGKEIDRVVGA-KKDELQMKTEK  159 (162)
Q Consensus       114 ---------~d~~~~l~~~~~i~~~~Ptiv~~-~~Gk~i~~~~g~-~~~~l~~~l~~  159 (162)
                               .|.+..+++.|++ .++|+++++ ++|+++.++.|. +.++|+++|+.
T Consensus       116 ~~y~~~pV~~D~~~~lak~fgV-~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie~  171 (521)
T PRK14018        116 LDYPKLPVLTDNGGTLAQSLNI-SVYPSWAIIGKDGDVQRIVKGSISEAQALALIRN  171 (521)
T ss_pred             CCCcccceeccccHHHHHHcCC-CCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHHH
Confidence                     3456678999999 999998666 899999999998 89999998883

>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional

Probab=99.68  E-value=5e-16  Score=133.37  Aligned_cols=109  Identities=20%  Similarity=0.346  Sum_probs=95.5

Q ss_pred             CCceeEeechhhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhhhhhhHHH-
Q 031271           19 TPLVMELQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYV-   97 (162)
Q Consensus        19 ~~~v~~i~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~~~l-   97 (162)
                      ....+.+++.+++++.+++++.++|++                                 +|+||++||++|+.+.+.. 
T Consensus       451 ~~~~~~i~s~~~l~~~l~~a~~~gK~V---------------------------------lVdF~A~WC~~Ck~~e~~~~  497 (571)
T PRK00293        451 HLNFQRIKTVAELDQALAEAKGKGKPV---------------------------------MLDLYADWCVACKEFEKYTF  497 (571)
T ss_pred             CCCceecCCHHHHHHHHHHHHhcCCcE---------------------------------EEEEECCcCHhHHHHHHHhc
Confidence            446778889999999999988888999                                 9999999999999998875 


Q ss_pred             --HHHHHhcCCcEEEEEECCCc----HHHHHhcCCCCCccEEEEEc-CCeEE--EEEcCC-CHHHHHHHHHHHh
Q 031271           98 --KDFAAMYTDVQFIKIDVDWL----PEAAKAFDLIDVLPTFVLVK-RGKEI--DRVVGA-KKDELQMKTEKRR  161 (162)
Q Consensus        98 --~~~~~~~~~v~f~~vd~d~~----~~l~~~~~i~~~~Ptiv~~~-~Gk~i--~~~~g~-~~~~l~~~l~~~~  161 (162)
                        +++.+.++++.++++|++++    .+++++|++ .++||+++|+ +|+++  .++.|. +++++.+++++..
T Consensus       498 ~~~~v~~~l~~~~~v~vDvt~~~~~~~~l~~~~~v-~g~Pt~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~~  570 (571)
T PRK00293        498 SDPQVQQALADTVLLQADVTANNAEDVALLKHYNV-LGLPTILFFDAQGQEIPDARVTGFMDAAAFAAHLRQLQ  570 (571)
T ss_pred             CCHHHHHHhcCCEEEEEECCCCChhhHHHHHHcCC-CCCCEEEEECCCCCCcccccccCCCCHHHHHHHHHHhc
Confidence              77888888899999999853    678999999 9999999994 89884  688898 9999999999865

>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain

Probab=99.67  E-value=8.3e-17  Score=111.82  Aligned_cols=96  Identities=15%  Similarity=0.373  Sum_probs=73.4

Q ss_pred             hhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhhhhhhHHHHHHHHhcC-Cc
Q 031271           29 HQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYVKDFAAMYT-DV  107 (162)
Q Consensus        29 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~-~v  107 (162)
                      .+|++.++.++.+++++                                 +|+||++||++|+.+.|.+.+...... +.
T Consensus         6 ~~~~~al~~A~~~~kpV---------------------------------lV~F~a~WC~~C~~~~~~~~~~~~~~~~~~   52 (117)
T cd02959           6 VTLEDGIKEAKDSGKPL---------------------------------MLLIHKTWCGACKALKPKFAESKEISELSH   52 (117)
T ss_pred             eeHHHHHHHHHHcCCcE---------------------------------EEEEeCCcCHHHHHHHHHHhhhHHHHhhcC
Confidence            46889999998889999                                 999999999999999999988766432 35


Q ss_pred             EEEEEECCCcH-HHHHhcCCCCC--ccEEEEE-cCCeEEEEEc---CC-CHHHHHHHHH
Q 031271          108 QFIKIDVDWLP-EAAKAFDLIDV--LPTFVLV-KRGKEIDRVV---GA-KKDELQMKTE  158 (162)
Q Consensus       108 ~f~~vd~d~~~-~l~~~~~i~~~--~Ptiv~~-~~Gk~i~~~~---g~-~~~~l~~~l~  158 (162)
                      .|+.++++... .....|++ .+  +||++++ ++|+.+.++.   |. +.+.+.+.|.
T Consensus        53 ~fv~v~vd~~~~~~~~~~~~-~g~~vPt~~f~~~~Gk~~~~~~~~~~~~~~~~f~~~~~  110 (117)
T cd02959          53 NFVMVNLEDDEEPKDEEFSP-DGGYIPRILFLDPSGDVHPEIINKKGNPNYKYFYSSAA  110 (117)
T ss_pred             cEEEEEecCCCCchhhhccc-CCCccceEEEECCCCCCchhhccCCCCccccccCCCHH
Confidence            67777777654 45678888 76  9999999 5999988544   44 4444444443

Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.

>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1

Probab=99.66  E-value=1.5e-15  Score=98.18  Aligned_cols=77  Identities=27%  Similarity=0.428  Sum_probs=69.2

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCC-cEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHHH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQMK  156 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~-v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~~  156 (162)
                      +..||++||++|+.+.|.+++++++++. +.++.||.++.++++++|++ .++||+++  +|+.  ++.|. +.++|.++
T Consensus         3 v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v-~~vPt~~~--~g~~--~~~G~~~~~~l~~~   77 (82)
T TIGR00411         3 IELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAMEYGI-MAVPAIVI--NGDV--EFIGAPTKEELVEA   77 (82)
T ss_pred             EEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHHcCC-ccCCEEEE--CCEE--EEecCCCHHHHHHH
Confidence            6789999999999999999999998864 99999999999999999999 99999986  7763  67787 89999999


Q ss_pred             HHHH
Q 031271          157 TEKR  160 (162)
Q Consensus       157 l~~~  160 (162)
                      |++.
T Consensus        78 l~~~   81 (82)
T TIGR00411        78 IKKR   81 (82)
T ss_pred             HHhh
Confidence            9875

This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.

>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=99.65  E-value=7.8e-16  Score=103.69  Aligned_cols=84  Identities=15%  Similarity=0.208  Sum_probs=76.4

Q ss_pred             ceEEEEEecCCChhhhhhhHHHHHHHHhcCC-cEEEEEECCCcHHHHHhcCCCC--CccEEEEEcC--CeEEEEEcCC-C
Q 031271           76 LKVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLID--VLPTFVLVKR--GKEIDRVVGA-K  149 (162)
Q Consensus        76 k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~-v~f~~vd~d~~~~l~~~~~i~~--~~Ptiv~~~~--Gk~i~~~~g~-~  149 (162)
                      +++++.|+++||++|..+.|.+++++++|.+ +.|+.+|+++++.+++.||+ .  .+|+++++++  |+......+. +
T Consensus        13 ~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~~~~~~~i-~~~~~P~~~~~~~~~~~k~~~~~~~~~   91 (103)
T cd02982          13 KPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGRHLEYFGL-KEEDLPVIAIINLSDGKKYLMPEEELT   91 (103)
T ss_pred             CCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHHHHHHcCC-ChhhCCEEEEEecccccccCCCccccC
Confidence            4559999999999999999999999999977 99999999999999999999 9  9999999987  7777666676 8


Q ss_pred             HHHHHHHHHHH
Q 031271          150 KDELQMKTEKR  160 (162)
Q Consensus       150 ~~~l~~~l~~~  160 (162)
                      .+.|.+||+++
T Consensus        92 ~~~l~~fi~~~  102 (103)
T cd02982          92 AESLEEFVEDF  102 (103)
T ss_pred             HHHHHHHHHhh
Confidence            99999999875

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w

>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein

Probab=99.65  E-value=5.8e-16  Score=107.06  Aligned_cols=61  Identities=21%  Similarity=0.399  Sum_probs=55.0

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcC---C-cEEEEEECC--CcHHHHHhcCCCCCccEEEEEcCCe
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYT---D-VQFIKIDVD--WLPEAAKAFDLIDVLPTFVLVKRGK  140 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~---~-v~f~~vd~d--~~~~l~~~~~i~~~~Ptiv~~~~Gk  140 (162)
                      +|+||++||++|+.+.|.|+++++.+.   + +.|..+|++  .+++++++|++ .++||+++|++|+
T Consensus        23 vV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i-~~~Pt~~lf~~~~   89 (114)
T cd02992          23 LVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGV-TGYPTLRYFPPFS   89 (114)
T ss_pred             EEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCC-CCCCEEEEECCCC
Confidence            999999999999999999999998764   3 888899965  57789999999 9999999998887

QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.

>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily

Probab=99.63  E-value=4.3e-15  Score=109.67  Aligned_cols=103  Identities=17%  Similarity=0.212  Sum_probs=82.2

Q ss_pred             ccccceeEEecCCC--eee----eeCceEEEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECC--------------
Q 031271           56 YCINEMVLNINDGG--NVV----FWVLKVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVD--------------  115 (162)
Q Consensus        56 ~~~~~~~~~~~~~~--~~~----~~~k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d--------------  115 (162)
                      ...|++++.+.+|+  .+.    ..+|+|+|+||++||++|+.+.|.++++.+.  ++.++.|+.+              
T Consensus        38 ~~ap~f~l~~~~G~~~~~~~~~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~--~~~vi~V~~~~~~~~~~~~~~~~~  115 (173)
T TIGR00385        38 KPVPAFPLAALREPLQAYTPEAFIQGKPVLLNVWASWCPPCRAEHPYLNELAKD--GLPIVGVDYKDQSQNALKFLKELG  115 (173)
T ss_pred             CCCCCccccccCCCCcccCHHHhcCCCEEEEEEECCcCHHHHHHHHHHHHHHHc--CCEEEEEECCCChHHHHHHHHHcC
Confidence            34688998888886  333    2458999999999999999999999998764  4666666643              


Q ss_pred             ---------CcHHHHHhcCCCCCccEEEEE-cCCeEEEEEcCC-CHHHHHHHHHHHh
Q 031271          116 ---------WLPEAAKAFDLIDVLPTFVLV-KRGKEIDRVVGA-KKDELQMKTEKRR  161 (162)
Q Consensus       116 ---------~~~~l~~~~~i~~~~Ptiv~~-~~Gk~i~~~~g~-~~~~l~~~l~~~~  161 (162)
                               ....+++.|++ .++|+.+++ ++|+++.++.|. +.++++++|.+++
T Consensus       116 ~~f~~v~~D~~~~~~~~~~v-~~~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~~  171 (173)
T TIGR00385       116 NPYQAILIDPNGKLGLDLGV-YGAPETFLVDGNGVILYRHAGPLNNEVWTEGFLPAM  171 (173)
T ss_pred             CCCceEEECCCCchHHhcCC-eeCCeEEEEcCCceEEEEEeccCCHHHHHHHHHHHh
Confidence                     33356778999 999975555 899999999998 8999999999875

Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.

>PTZ00102 disulphide isomerase; Provisional

Probab=99.63  E-value=3.3e-15  Score=125.35  Aligned_cols=89  Identities=22%  Similarity=0.390  Sum_probs=79.2

Q ss_pred             eeeCceEEEEEecCCChhhhhhhHHHHHHHHhcCC---cEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEE-EEEcC
Q 031271           72 VFWVLKVVIYYTAAWCGPCKFIEPYVKDFAAMYTD---VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEI-DRVVG  147 (162)
Q Consensus        72 ~~~~k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~---v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i-~~~~g  147 (162)
                      ..++++|+|+||++||++|+.+.|.|+++++.+++   +.++.+|++.+...++.|++ .++||+++|++|+.+ .++.|
T Consensus       372 ~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~v-~~~Pt~~~~~~~~~~~~~~~G  450 (477)
T PTZ00102        372 FKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFSW-SAFPTILFVKAGERTPIPYEG  450 (477)
T ss_pred             hcCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccchhcCCC-cccCeEEEEECCCcceeEecC
Confidence            56679999999999999999999999999988763   88999999999999999999 999999999766544 57888


Q ss_pred             C-CHHHHHHHHHHHh
Q 031271          148 A-KKDELQMKTEKRR  161 (162)
Q Consensus       148 ~-~~~~l~~~l~~~~  161 (162)
                      . +.+.|.++|+++.
T Consensus       451 ~~~~~~l~~~i~~~~  465 (477)
T PTZ00102        451 ERTVEGFKEFVNKHA  465 (477)
T ss_pred             cCCHHHHHHHHHHcC
Confidence            7 9999999999875

>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic

Probab=99.62  E-value=4.5e-15  Score=123.54  Aligned_cols=82  Identities=21%  Similarity=0.471  Sum_probs=74.6

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcC----CcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeE-EEEEcCC-CHHH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYT----DVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKE-IDRVVGA-KKDE  152 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~----~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~-i~~~~g~-~~~~  152 (162)
                      +|+|||+||++|+++.|.+.++++.+.    ++.|+.||++.+++++++|+| .++||+++|++|+. +.++.|. +.+.
T Consensus        22 ~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i-~~~Pt~~~~~~g~~~~~~~~g~~~~~~  100 (462)
T TIGR01130        22 LVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGV-SGYPTLKIFRNGEDSVSDYNGPRDADG  100 (462)
T ss_pred             EEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCC-ccccEEEEEeCCccceeEecCCCCHHH
Confidence            999999999999999999999887663    399999999999999999999 99999999999987 7777887 8999


Q ss_pred             HHHHHHHHh
Q 031271          153 LQMKTEKRR  161 (162)
Q Consensus       153 l~~~l~~~~  161 (162)
                      |.+++.+..
T Consensus       101 l~~~i~~~~  109 (462)
T TIGR01130       101 IVKYMKKQS  109 (462)
T ss_pred             HHHHHHHhc
Confidence            999998764

Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=99.62  E-value=5.1e-15  Score=112.87  Aligned_cols=82  Identities=20%  Similarity=0.356  Sum_probs=71.1

Q ss_pred             EEEEec---CCChhhhhhhHHHHHHHHhcCCc--EEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEE-EEcCC-CHH
Q 031271           79 VIYYTA---AWCGPCKFIEPYVKDFAAMYTDV--QFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEID-RVVGA-KKD  151 (162)
Q Consensus        79 vv~F~a---~wC~~C~~~~~~l~~~~~~~~~v--~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~-~~~g~-~~~  151 (162)
                      ++.|++   +||++|+.+.|.++++++.++++  .++.+|.+++++++++|+| .++||+++|++|+.+. ++.|. +.+
T Consensus        23 i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V-~~~Pt~~~f~~g~~~~~~~~G~~~~~  101 (215)
T TIGR02187        23 IVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGV-ERVPTTIILEEGKDGGIRYTGIPAGY  101 (215)
T ss_pred             EEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHHHHcCC-CccCEEEEEeCCeeeEEEEeecCCHH
Confidence            455777   99999999999999999999774  4666666799999999999 9999999999999984 88888 788


Q ss_pred             HHHHHHHHHh
Q 031271          152 ELQMKTEKRR  161 (162)
Q Consensus       152 ~l~~~l~~~~  161 (162)
                      +|.++|+.++
T Consensus       102 ~l~~~i~~~~  111 (215)
T TIGR02187       102 EFAALIEDIV  111 (215)
T ss_pred             HHHHHHHHHH
Confidence            8988888764

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>PLN02309 5'-adenylylsulfate reductase

Probab=99.62  E-value=5.6e-15  Score=123.28  Aligned_cols=81  Identities=22%  Similarity=0.327  Sum_probs=69.2

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCC--cEEEEEECC-CcHHHHH-hcCCCCCccEEEEEcCCe-EEEEEc-C-CCHH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTD--VQFIKIDVD-WLPEAAK-AFDLIDVLPTFVLVKRGK-EIDRVV-G-AKKD  151 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~--v~f~~vd~d-~~~~l~~-~~~i~~~~Ptiv~~~~Gk-~i~~~~-g-~~~~  151 (162)
                      +|+||++||++|+.+.|.|+++++.|.+  +.|+++|++ .+.+++. +|+| .++||+++|++|. ....+. + .+.+
T Consensus       369 lV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I-~~~PTil~f~~g~~~~v~Y~~~~R~~~  447 (457)
T PLN02309        369 LVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQL-GSFPTILLFPKNSSRPIKYPSEKRDVD  447 (457)
T ss_pred             EEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCC-ceeeEEEEEeCCCCCeeecCCCCcCHH
Confidence            9999999999999999999999999854  999999999 7778886 6999 9999999997664 223344 3 3899


Q ss_pred             HHHHHHHHH
Q 031271          152 ELQMKTEKR  160 (162)
Q Consensus       152 ~l~~~l~~~  160 (162)
                      .|..||+..
T Consensus       448 ~L~~fv~~~  456 (457)
T PLN02309        448 SLLSFVNSL  456 (457)
T ss_pred             HHHHHHHHh
Confidence            999999875

>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent

Probab=99.62  E-value=6.5e-15  Score=122.98  Aligned_cols=85  Identities=18%  Similarity=0.229  Sum_probs=69.7

Q ss_pred             CceEEEEEecCCChhhhhhhHHHHHHHHhcCC--cEEEEEECCCcH-HH-HHhcCCCCCccEEEEEcCCe-EEEEEc-CC
Q 031271           75 VLKVVIYYTAAWCGPCKFIEPYVKDFAAMYTD--VQFIKIDVDWLP-EA-AKAFDLIDVLPTFVLVKRGK-EIDRVV-GA  148 (162)
Q Consensus        75 ~k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~--v~f~~vd~d~~~-~l-~~~~~i~~~~Ptiv~~~~Gk-~i~~~~-g~  148 (162)
                      +++|+|+||++||++|+.+.|.|++++++|.+  +.|+.||+|.+. .+ .++|+| ..+||+++|++|. ....+. |.
T Consensus       371 ~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I-~~~PTii~Fk~g~~~~~~Y~~g~  449 (463)
T TIGR00424       371 KEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQL-GSFPTILFFPKHSSRPIKYPSEK  449 (463)
T ss_pred             CCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCC-CccceEEEEECCCCCceeCCCCC
Confidence            34459999999999999999999999999864  899999998753 44 478999 9999999998875 223354 44


Q ss_pred             -CHHHHHHHHHHH
Q 031271          149 -KKDELQMKTEKR  160 (162)
Q Consensus       149 -~~~~l~~~l~~~  160 (162)
                       +.+.|..||+.+
T Consensus       450 R~~e~L~~Fv~~~  462 (463)
T TIGR00424       450 RDVDSLMSFVNLL  462 (463)
T ss_pred             CCHHHHHHHHHhh
Confidence             899999999864

This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.

>PRK03147 thiol-disulfide oxidoreductase; Provisional

Probab=99.61  E-value=1.4e-14  Score=106.11  Aligned_cols=108  Identities=25%  Similarity=0.449  Sum_probs=90.7

Q ss_pred             eeeccccceeEEecCCCeeeee---CceEEEEEecCCChhhhhhhHHHHHHHHhcCC--cEEEEEECCC-----------
Q 031271           53 CLIYCINEMVLNINDGGNVVFW---VLKVVIYYTAAWCGPCKFIEPYVKDFAAMYTD--VQFIKIDVDW-----------  116 (162)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~---~k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~--v~f~~vd~d~-----------  116 (162)
                      ......|++.+.+.+|+.+..+   +++++|+||++||++|+...+.+.++.+++++  +.++.|+.+.           
T Consensus        36 ~~g~~~p~~~~~~~~g~~~~l~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~  115 (173)
T PRK03147         36 QVGKEAPNFVLTDLEGKKIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNR  115 (173)
T ss_pred             CCCCCCCCcEeecCCCCEEeHHHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHH
Confidence            3445678899999999987543   48899999999999999999999999998864  8888888753           


Q ss_pred             -----------cHHHHHhcCCCCCccEEEEE-cCCeEEEEEcCC-CHHHHHHHHHHHh
Q 031271          117 -----------LPEAAKAFDLIDVLPTFVLV-KRGKEIDRVVGA-KKDELQMKTEKRR  161 (162)
Q Consensus       117 -----------~~~l~~~~~i~~~~Ptiv~~-~~Gk~i~~~~g~-~~~~l~~~l~~~~  161 (162)
                                 +.++.+.|++ ..+|+++++ ++|+++..+.|. +.+++.+++++..
T Consensus       116 ~~~~~~~~~d~~~~~~~~~~v-~~~P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~~~  172 (173)
T PRK03147        116 YGLTFPVAIDKGRQVIDAYGV-GPLPTTFLIDKDGKVVKVITGEMTEEQLEEYLEKIK  172 (173)
T ss_pred             hCCCceEEECCcchHHHHcCC-CCcCeEEEECCCCcEEEEEeCCCCHHHHHHHHHHhc
Confidence                       3567899999 999988777 799999888887 8899999888653

>PTZ00102 disulphide isomerase; Provisional

Probab=99.61  E-value=6.9e-15  Score=123.42  Aligned_cols=81  Identities=25%  Similarity=0.472  Sum_probs=73.9

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhc----CCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMY----TDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDEL  153 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~----~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l  153 (162)
                      +|+||++||++|+++.|.++++++.+    +++.|+.||++.+.+++++|+| .++||+++|++|+.+ ++.|. +.+.|
T Consensus        53 lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i-~~~Pt~~~~~~g~~~-~y~g~~~~~~l  130 (477)
T PTZ00102         53 LVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGV-RGYPTIKFFNKGNPV-NYSGGRTADGI  130 (477)
T ss_pred             EEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCC-CcccEEEEEECCceE-EecCCCCHHHH
Confidence            99999999999999999999988765    2499999999999999999999 999999999999887 77777 89999


Q ss_pred             HHHHHHHh
Q 031271          154 QMKTEKRR  161 (162)
Q Consensus       154 ~~~l~~~~  161 (162)
                      .+|+.++.
T Consensus       131 ~~~l~~~~  138 (477)
T PTZ00102        131 VSWIKKLT  138 (477)
T ss_pred             HHHHHHhh
Confidence            99999874

>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]

Probab=99.61  E-value=1.8e-15  Score=126.20  Aligned_cols=98  Identities=20%  Similarity=0.361  Sum_probs=81.7

Q ss_pred             EEecCCCeeeeeCceEEEEEecCCChhhhhhhHHHHHHHHhcC----CcEEEEEECCCcHHHHHhcCCCCCccEEEEEcC
Q 031271           63 LNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYVKDFAAMYT----DVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKR  138 (162)
Q Consensus        63 ~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~----~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~  138 (162)
                      ++..+...+...+.-++|.||||||++|+.+.|.+++.+..+.    .+..++||++.+.+++.+|+| .++||+.+|+|
T Consensus        30 Lt~dnf~~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v-~gyPTlkiFrn  108 (493)
T KOG0190|consen   30 LTKDNFKETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEV-RGYPTLKIFRN  108 (493)
T ss_pred             EecccHHHHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcC-CCCCeEEEEec
Confidence            3333333444444444999999999999999999999998774    399999999999999999999 99999999999


Q ss_pred             CeEEEEEcCC-CHHHHHHHHHHHh
Q 031271          139 GKEIDRVVGA-KKDELQMKTEKRR  161 (162)
Q Consensus       139 Gk~i~~~~g~-~~~~l~~~l~~~~  161 (162)
                      |+....+.|. ..+.+..|+++..
T Consensus       109 G~~~~~Y~G~r~adgIv~wl~kq~  132 (493)
T KOG0190|consen  109 GRSAQDYNGPREADGIVKWLKKQS  132 (493)
T ss_pred             CCcceeccCcccHHHHHHHHHhcc
Confidence            9986667777 8999999998753

>PRK15412 thiol:disulfide interchange protein DsbE; Provisional

Probab=99.61  E-value=1.1e-14  Score=108.54  Aligned_cols=103  Identities=13%  Similarity=0.140  Sum_probs=80.2

Q ss_pred             ccccceeEEecCC--Ceee----eeCceEEEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcH-----------
Q 031271           56 YCINEMVLNINDG--GNVV----FWVLKVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLP-----------  118 (162)
Q Consensus        56 ~~~~~~~~~~~~~--~~~~----~~~k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~-----------  118 (162)
                      ...|++.+.+.+|  +.+.    ...|+|+|+||++||++|+.+.|.+.++.+.  ++.++.|+.++.+           
T Consensus        43 ~~~p~f~l~~~~g~g~~~~~~~~~~gk~vvv~FwatwC~~C~~e~p~l~~l~~~--~~~vi~v~~~~~~~~~~~~~~~~~  120 (185)
T PRK15412         43 KPVPKFRLESLENPGQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ--GIRVVGMNYKDDRQKAISWLKELG  120 (185)
T ss_pred             CCCCCcCCccCCCCCccccHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHc--CCEEEEEECCCCHHHHHHHHHHcC
Confidence            3467788887774  4332    2468999999999999999999999998763  6888888875432           


Q ss_pred             ------------HHHHhcCCCCCccEEEEE-cCCeEEEEEcCC-CHHHHHHHHHHHh
Q 031271          119 ------------EAAKAFDLIDVLPTFVLV-KRGKEIDRVVGA-KKDELQMKTEKRR  161 (162)
Q Consensus       119 ------------~l~~~~~i~~~~Ptiv~~-~~Gk~i~~~~g~-~~~~l~~~l~~~~  161 (162)
                                  .+...|++ .++|+.+++ ++|+++.++.|. +.+.|++.|+.++
T Consensus       121 ~~~~~~~~D~~~~~~~~~gv-~~~P~t~vid~~G~i~~~~~G~~~~~~l~~~i~~~~  176 (185)
T PRK15412        121 NPYALSLFDGDGMLGLDLGV-YGAPETFLIDGNGIIRYRHAGDLNPRVWESEIKPLW  176 (185)
T ss_pred             CCCceEEEcCCccHHHhcCC-CcCCeEEEECCCceEEEEEecCCCHHHHHHHHHHHH
Confidence                        24557899 999976665 799999999998 8888888887654

>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif

Probab=99.60  E-value=6.8e-15  Score=102.90  Aligned_cols=94  Identities=18%  Similarity=0.211  Sum_probs=72.4

Q ss_pred             ccceeEEecCC--Ceeee---eCceEEEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEEC------------------
Q 031271           58 INEMVLNINDG--GNVVF---WVLKVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDV------------------  114 (162)
Q Consensus        58 ~~~~~~~~~~~--~~~~~---~~k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~------------------  114 (162)
                      .|++.+.+.+|  ..+..   .+++++|+||++||++|+.+.|.++++.+.+ ++.++.|+.                  
T Consensus         3 ~p~f~~~~~~g~~~~~~~~~~~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~-~~~vv~v~~~~~~~~~~~~~~~~~~~~   81 (127)
T cd03010           3 APAFSLPALPGPDKTLTSADLKGKPYLLNVWASWCAPCREEHPVLMALARQG-RVPIYGINYKDNPENALAWLARHGNPY   81 (127)
T ss_pred             CCCcccccccCCCccccHHHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc-CcEEEEEECCCCHHHHHHHHHhcCCCC
Confidence            35666666666  44432   3488999999999999999999999998877 466666663                  


Q ss_pred             -----CCcHHHHHhcCCCCCccEEEEE-cCCeEEEEEcCC-CHHHH
Q 031271          115 -----DWLPEAAKAFDLIDVLPTFVLV-KRGKEIDRVVGA-KKDEL  153 (162)
Q Consensus       115 -----d~~~~l~~~~~i~~~~Ptiv~~-~~Gk~i~~~~g~-~~~~l  153 (162)
                           |....+++.|++ ..+|+.+++ ++|+++.++.|. +.+.|
T Consensus        82 ~~~~~D~~~~~~~~~~v-~~~P~~~~ld~~G~v~~~~~G~~~~~~~  126 (127)
T cd03010          82 AAVGFDPDGRVGIDLGV-YGVPETFLIDGDGIIRYKHVGPLTPEVW  126 (127)
T ss_pred             ceEEECCcchHHHhcCC-CCCCeEEEECCCceEEEEEeccCChHhc
Confidence                 445578889999 999965555 899999999998 65543

Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.

>PHA02125 thioredoxin-like protein

Probab=99.60  E-value=1.2e-14  Score=93.16  Aligned_cols=70  Identities=27%  Similarity=0.608  Sum_probs=60.4

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC--CHHHHHHH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA--KKDELQMK  156 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~--~~~~l~~~  156 (162)
                      +++||++||++|+.+.|.|+++     .+.++.||.+.+++++++|++ .++||++   +|+.+.+..|.  +..+|++.
T Consensus         2 iv~f~a~wC~~Ck~~~~~l~~~-----~~~~~~vd~~~~~~l~~~~~v-~~~PT~~---~g~~~~~~~G~~~~~~~l~~~   72 (75)
T PHA02125          2 IYLFGAEWCANCKMVKPMLANV-----EYTYVDVDTDEGVELTAKHHI-RSLPTLV---NTSTLDRFTGVPRNVAELKEK   72 (75)
T ss_pred             EEEEECCCCHhHHHHHHHHHHH-----hheEEeeeCCCCHHHHHHcCC-ceeCeEE---CCEEEEEEeCCCCcHHHHHHH
Confidence            6899999999999999999765     256899999999999999999 9999987   78888999998  34666665


Q ss_pred             H
Q 031271          157 T  157 (162)
Q Consensus       157 l  157 (162)
                      |
T Consensus        73 ~   73 (75)
T PHA02125         73 L   73 (75)
T ss_pred             h
Confidence            4

>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif

Probab=99.59  E-value=1.1e-14  Score=102.15  Aligned_cols=69  Identities=19%  Similarity=0.149  Sum_probs=57.3

Q ss_pred             EEEEecCCChhhhhhhHH-H--HHHHHhc-CCcEEEEEECCCcHHHHH--------hcCCCCCccEEEEE-cCCeEEEEE
Q 031271           79 VIYYTAAWCGPCKFIEPY-V--KDFAAMY-TDVQFIKIDVDWLPEAAK--------AFDLIDVLPTFVLV-KRGKEIDRV  145 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~-l--~~~~~~~-~~v~f~~vd~d~~~~l~~--------~~~i~~~~Ptiv~~-~~Gk~i~~~  145 (162)
                      +|+|+++||++|+.|.+. +  .++.+.+ .++.++++|.++.+++.+        .|++ .++|+++++ ++|+++.+.
T Consensus        19 ll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~-~G~Pt~vfl~~~G~~~~~~   97 (124)
T cd02955          19 FLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQ-GGWPLNVFLTPDLKPFFGG   97 (124)
T ss_pred             EEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCC-CCCCEEEEECCCCCEEeee
Confidence            999999999999999874 3  4666654 469999999999887765        3589 999999999 789999877


Q ss_pred             cCC
Q 031271          146 VGA  148 (162)
Q Consensus       146 ~g~  148 (162)
                      .+.
T Consensus        98 ~~~  100 (124)
T cd02955          98 TYF  100 (124)
T ss_pred             eec
Confidence            665

The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.

>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A

Probab=99.58  E-value=9.1e-15  Score=99.95  Aligned_cols=83  Identities=29%  Similarity=0.437  Sum_probs=63.8

Q ss_pred             eCceEEEEEecCCChhhhhhhHHHHH---HHHhcC-CcEEEEEECCCc--------------------HHHHHhcCCCCC
Q 031271           74 WVLKVVIYYTAAWCGPCKFIEPYVKD---FAAMYT-DVQFIKIDVDWL--------------------PEAAKAFDLIDV  129 (162)
Q Consensus        74 ~~k~vvv~F~a~wC~~C~~~~~~l~~---~~~~~~-~v~f~~vd~d~~--------------------~~l~~~~~i~~~  129 (162)
                      ++++++++||++||++|+.+.+.+.+   +.+.+. ++.++.++++..                    .+++++||| .+
T Consensus         4 ~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v-~g   82 (112)
T PF13098_consen    4 NGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGV-NG   82 (112)
T ss_dssp             TSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT---S
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCC-Cc
Confidence            34566999999999999999998875   444443 488888888643                    358999999 99


Q ss_pred             ccEEEEE-cCCeEEEEEcCC-CHHHHHHHH
Q 031271          130 LPTFVLV-KRGKEIDRVVGA-KKDELQMKT  157 (162)
Q Consensus       130 ~Ptiv~~-~~Gk~i~~~~g~-~~~~l~~~l  157 (162)
                      +||++++ .+|+.+.++.|+ ++++|.++|
T Consensus        83 tPt~~~~d~~G~~v~~~~G~~~~~~l~~~L  112 (112)
T PF13098_consen   83 TPTIVFLDKDGKIVYRIPGYLSPEELLKML  112 (112)
T ss_dssp             SSEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred             cCEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence            9999999 589999999999 899998875

...

>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB

Probab=99.57  E-value=4.1e-14  Score=102.61  Aligned_cols=84  Identities=20%  Similarity=0.354  Sum_probs=65.5

Q ss_pred             ceEEEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCc------------HHHH-Hhc---CCCCCccEEEEE-cC
Q 031271           76 LKVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWL------------PEAA-KAF---DLIDVLPTFVLV-KR  138 (162)
Q Consensus        76 k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~------------~~l~-~~~---~i~~~~Ptiv~~-~~  138 (162)
                      +.++|+||++||++|+++.|.+++++++| ++.++.|++|..            .... ..|   ++ .++||.+++ ++
T Consensus        51 ~~~lvnFWAsWCppCr~e~P~L~~l~~~~-~~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v-~~iPTt~LID~~  128 (153)
T TIGR02738        51 DYALVFFYQSTCPYCHQFAPVLKRFSQQF-GLPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRP-VVTPATFLVNVN  128 (153)
T ss_pred             CCEEEEEECCCChhHHHHHHHHHHHHHHc-CCcEEEEEeCCCcccccccccCCchHHHHHHhccCCC-CCCCeEEEEeCC
Confidence            44599999999999999999999999988 566766666642            2333 445   88 999998888 56


Q ss_pred             CeE-EEEEcCC-CHHHHHHHHHHHh
Q 031271          139 GKE-IDRVVGA-KKDELQMKTEKRR  161 (162)
Q Consensus       139 Gk~-i~~~~g~-~~~~l~~~l~~~~  161 (162)
                      |+. ..++.|. +.+++++.|.+++
T Consensus       129 G~~i~~~~~G~~s~~~l~~~I~~ll  153 (153)
T TIGR02738       129 TRKAYPVLQGAVDEAELANRMDEIL  153 (153)
T ss_pred             CCEEEEEeecccCHHHHHHHHHHhC
Confidence            664 5577888 8999999888753

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.

>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells

Probab=99.55  E-value=1e-14  Score=100.76  Aligned_cols=81  Identities=14%  Similarity=0.179  Sum_probs=63.7

Q ss_pred             ceEEEEEec--CCCh---hhhhhhHHHHHHHHhcCCcEEEEEEC-----CCcHHHHHhcCCCC--CccEEEEEcCCe--E
Q 031271           76 LKVVIYYTA--AWCG---PCKFIEPYVKDFAAMYTDVQFIKIDV-----DWLPEAAKAFDLID--VLPTFVLVKRGK--E  141 (162)
Q Consensus        76 k~vvv~F~a--~wC~---~C~~~~~~l~~~~~~~~~v~f~~vd~-----d~~~~l~~~~~i~~--~~Ptiv~~~~Gk--~  141 (162)
                      +.++|.|||  |||+   .|..+.|.+.+.+.   .+.+.+||+     .++.+|+++|+| .  ++||+.+|++|.  .
T Consensus        19 ~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~---~v~lakVd~~d~~~~~~~~L~~~y~I-~~~gyPTl~lF~~g~~~~   94 (116)
T cd03007          19 KYSLVKFDTAYPYGEKHEAFTRLAESSASATD---DLLVAEVGIKDYGEKLNMELGERYKL-DKESYPVIYLFHGGDFEN   94 (116)
T ss_pred             CcEEEEEeCCCCCCCChHHHHHHHHHHHhhcC---ceEEEEEecccccchhhHHHHHHhCC-CcCCCCEEEEEeCCCcCC
Confidence            334999999  8888   77777666655443   388999999     467889999999 9  999999999884  3


Q ss_pred             EEEEcC--CCHHHHHHHHHHH
Q 031271          142 IDRVVG--AKKDELQMKTEKR  160 (162)
Q Consensus       142 i~~~~g--~~~~~l~~~l~~~  160 (162)
                      ...+.|  .+.+.|.+||.++
T Consensus        95 ~~~Y~G~~r~~~~lv~~v~~~  115 (116)
T cd03007          95 PVPYSGADVTVDALQRFLKGN  115 (116)
T ss_pred             CccCCCCcccHHHHHHHHHhc
Confidence            234555  5899999999875

It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.

>cd02958 UAS UAS family; UAS is a domain of unknown function

Probab=99.55  E-value=7.6e-14  Score=96.20  Aligned_cols=99  Identities=10%  Similarity=0.186  Sum_probs=84.4

Q ss_pred             hhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhhhhhhHH-H--HHHHHhcC
Q 031271           29 HQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPY-V--KDFAAMYT  105 (162)
Q Consensus        29 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~~~-l--~~~~~~~~  105 (162)
                      .+|++.++.|+.++|++                                 +|+|+++||++|+.+... |  +++.+.+.
T Consensus         4 gs~~~a~~~Ak~~~K~l---------------------------------lv~~~~~~c~~c~~~~~~vl~~~~v~~~l~   50 (114)
T cd02958           4 GSFEDAKQEAKSEKKWL---------------------------------LVYLQSEDEFDSQVLNRDLWSNESVKEFIR   50 (114)
T ss_pred             CCHHHHHHHHHhhCceE---------------------------------EEEEecCCcchHHHHHHHHcCCHHHHHHHH
Confidence            46888999999999999                                 999999999999999764 4  56666554


Q ss_pred             -CcEEEEEECC--CcHHHHHhcCCCCCccEEEEE-c-CCeEEEEEcCC-CHHHHHHHHHHHh
Q 031271          106 -DVQFIKIDVD--WLPEAAKAFDLIDVLPTFVLV-K-RGKEIDRVVGA-KKDELQMKTEKRR  161 (162)
Q Consensus       106 -~v~f~~vd~d--~~~~l~~~~~i~~~~Ptiv~~-~-~Gk~i~~~~g~-~~~~l~~~l~~~~  161 (162)
                       ++.++.+|++  +...+++.|++ .++|+++++ + +|+.+.++.|. +++.|.+.|+++.
T Consensus        51 ~~~v~~~~d~~~~e~~~~~~~~~~-~~~P~~~~i~~~~g~~l~~~~G~~~~~~f~~~L~~~~  111 (114)
T cd02958          51 ENFIFWQCDIDSSEGQRFLQSYKV-DKYPHIAIIDPRTGEVLKVWSGNITPEDLLSQLIEFL  111 (114)
T ss_pred             hCEEEEEecCCCccHHHHHHHhCc-cCCCeEEEEeCccCcEeEEEcCCCCHHHHHHHHHHHH
Confidence             4888888887  45678999999 999999998 5 79999999999 8999999998764

Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),

>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif

Probab=99.55  E-value=2.6e-14  Score=100.53  Aligned_cols=81  Identities=25%  Similarity=0.549  Sum_probs=63.0

Q ss_pred             EecCCCeeeee---CceEEEEEecCCChhhhhhhHHHHHHHHhcC----CcEEEEEECCCc-------------------
Q 031271           64 NINDGGNVVFW---VLKVVIYYTAAWCGPCKFIEPYVKDFAAMYT----DVQFIKIDVDWL-------------------  117 (162)
Q Consensus        64 ~~~~~~~~~~~---~k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~----~v~f~~vd~d~~-------------------  117 (162)
                      .+.+|+.+..+   +|+|+|+||++||++|+.+.|.+.++.+++.    ++.++.|++|..                   
T Consensus         4 ~~~~G~~v~l~~~~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~   83 (131)
T cd03009           4 LRNDGGKVPVSSLEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFS   83 (131)
T ss_pred             cccCCCCccHHHhCCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccC
Confidence            34566655443   3788999999999999999999998877763    467777777633                   


Q ss_pred             -----HHHHHhcCCCCCccEEEEE-cCCeEEEEE
Q 031271          118 -----PEAAKAFDLIDVLPTFVLV-KRGKEIDRV  145 (162)
Q Consensus       118 -----~~l~~~~~i~~~~Ptiv~~-~~Gk~i~~~  145 (162)
                           ..++++|++ ..+|+++++ ++|+++.+.
T Consensus        84 ~~~~~~~~~~~~~v-~~~P~~~lid~~G~i~~~~  116 (131)
T cd03009          84 DRERRSRLNRTFKI-EGIPTLIILDADGEVVTTD  116 (131)
T ss_pred             CHHHHHHHHHHcCC-CCCCEEEEECCCCCEEccc
Confidence                 357789999 999999999 599887653

TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the

>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins

Probab=99.54  E-value=7.5e-14  Score=99.75  Aligned_cols=91  Identities=31%  Similarity=0.491  Sum_probs=74.9

Q ss_pred             cccceeEEe--cCCCeeeeeC---ceEEEEEecC-CChhhhhhhHHHHHHHHhcC--CcEEEEEECCC------------
Q 031271           57 CINEMVLNI--NDGGNVVFWV---LKVVIYYTAA-WCGPCKFIEPYVKDFAAMYT--DVQFIKIDVDW------------  116 (162)
Q Consensus        57 ~~~~~~~~~--~~~~~~~~~~---k~vvv~F~a~-wC~~C~~~~~~l~~~~~~~~--~v~f~~vd~d~------------  116 (162)
                      ..|++.+.+  .+|+.+..++   |+++|+||++ ||++|+...|.+.++.+.|.  ++.++.|..+.            
T Consensus         5 ~~P~~~~~~~~~~g~~~~l~~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~   84 (146)
T PF08534_consen    5 KAPDFSLKDLDLDGKPVSLSDFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYG   84 (146)
T ss_dssp             B--CCEEEEEETTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTT
T ss_pred             CCCCeEEEeecCCCCEecHHHhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhC
Confidence            457888855  9999887766   9999999999 99999999999999988864  38888877653            


Q ss_pred             ---------cHHHHHhcCCCC---------CccEEEEE-cCCeEEEEEcCC
Q 031271          117 ---------LPEAAKAFDLID---------VLPTFVLV-KRGKEIDRVVGA  148 (162)
Q Consensus       117 ---------~~~l~~~~~i~~---------~~Ptiv~~-~~Gk~i~~~~g~  148 (162)
                               ...+.+.|++ .         .+|+++++ ++|+++.+..|.
T Consensus        85 ~~~~~~~D~~~~~~~~~~~-~~~~~~~~~~~~P~~~lId~~G~V~~~~~g~  134 (146)
T PF08534_consen   85 INFPVLSDPDGALAKALGV-TIMEDPGNGFGIPTTFLIDKDGKVVYRHVGP  134 (146)
T ss_dssp             TTSEEEEETTSHHHHHTTC-EEECCTTTTSSSSEEEEEETTSBEEEEEESS
T ss_pred             CCceEEechHHHHHHHhCC-ccccccccCCeecEEEEEECCCEEEEEEeCC
Confidence                     3468888998 7         99987666 899999999998

Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=99.54  E-value=9.3e-14  Score=105.92  Aligned_cols=77  Identities=18%  Similarity=0.283  Sum_probs=69.7

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHHHH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQMKT  157 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~~l  157 (162)
                      ++.||++||++|..+.+.+++++.+++++.+..+|.+..++++++|+| .++||++++++|+.   +.|. ..++|.++|
T Consensus       137 I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~~~~~~~~~V-~~vPtl~i~~~~~~---~~G~~~~~~l~~~l  212 (215)
T TIGR02187       137 IEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANENPDLAEKYGV-MSVPKIVINKGVEE---FVGAYPEEQFLEYI  212 (215)
T ss_pred             EEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCCCHHHHHHhCC-ccCCEEEEecCCEE---EECCCCHHHHHHHH
Confidence            555999999999999999999999888899999999999999999999 99999999988864   6687 788999888


Q ss_pred             HH
Q 031271          158 EK  159 (162)
Q Consensus       158 ~~  159 (162)
                      .+
T Consensus       213 ~~  214 (215)
T TIGR02187       213 LS  214 (215)
T ss_pred             Hh
Confidence            75

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif

Probab=99.54  E-value=8.4e-14  Score=96.59  Aligned_cols=96  Identities=24%  Similarity=0.399  Sum_probs=72.3

Q ss_pred             cceeEEecCCCeeee---eCceEEEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEEC---------------------
Q 031271           59 NEMVLNINDGGNVVF---WVLKVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDV---------------------  114 (162)
Q Consensus        59 ~~~~~~~~~~~~~~~---~~k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~---------------------  114 (162)
                      |++.+.+.+|+.+..   ..++++|+||++||++|+.+.|.+.++++++. +..+.+|-                     
T Consensus         1 p~f~l~~~~g~~~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~   79 (123)
T cd03011           1 PLFTATTLDGEQFDLESLSGKPVLVYFWATWCPVCRFTSPTVNQLAADYP-VVSVALRSGDDGAVARFMQKKGYGFPVIN   79 (123)
T ss_pred             CCceeecCCCCEeeHHHhCCCEEEEEEECCcChhhhhhChHHHHHHhhCC-EEEEEccCCCHHHHHHHHHHcCCCccEEE
Confidence            456777777776643   23789999999999999999999999987742 22222221                     


Q ss_pred             CCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHHH
Q 031271          115 DWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQMK  156 (162)
Q Consensus       115 d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~~  156 (162)
                      |.+.+++++|++ .++|+++++.+|++..+..|. +++.|.+.
T Consensus        80 d~~~~~~~~~~i-~~~P~~~vid~~gi~~~~~g~~~~~~~~~~  121 (123)
T cd03011          80 DPDGVISARWGV-SVTPAIVIVDPGGIVFVTTGVTSEWGLRLR  121 (123)
T ss_pred             CCCcHHHHhCCC-CcccEEEEEcCCCeEEEEeccCCHHHHHhh
Confidence            344579999999 999999999544488888998 88888764

The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.

>PTZ00056 glutathione peroxidase; Provisional

Probab=99.53  E-value=9.7e-14  Score=104.76  Aligned_cols=106  Identities=13%  Similarity=0.166  Sum_probs=80.7

Q ss_pred             ccccceeEEecCCCeeeeeC---ceEEEEEecCCChhhhhhhHHHHHHHHhcCC--cEEEEEECC-------Cc----HH
Q 031271           56 YCINEMVLNINDGGNVVFWV---LKVVIYYTAAWCGPCKFIEPYVKDFAAMYTD--VQFIKIDVD-------WL----PE  119 (162)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~---k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~--v~f~~vd~d-------~~----~~  119 (162)
                      ...|++.+.+.+|+.+..++   |+|+|+||++||++|+...|.|.++.++|.+  +.++.|+++       ..    ..
T Consensus        17 ~~~pdf~l~d~~G~~vsL~~~kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~   96 (199)
T PTZ00056         17 KSIYDYTVKTLEGTTVPMSSLKNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRK   96 (199)
T ss_pred             CCCCceEEECCCCCEEeHHHhCCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHH
Confidence            35788999999999886554   9999999999999999999999999999864  888888753       11    22


Q ss_pred             HHHhcCC----C---------------------------C----Ccc----EEEEEcCCeEEEEEcCC-CHHHHHHHHHH
Q 031271          120 AAKAFDL----I---------------------------D----VLP----TFVLVKRGKEIDRVVGA-KKDELQMKTEK  159 (162)
Q Consensus       120 l~~~~~i----~---------------------------~----~~P----tiv~~~~Gk~i~~~~g~-~~~~l~~~l~~  159 (162)
                      +++++++    .                           .    .+|    ++++-++|+++.++.|. +++.|++.|++
T Consensus        97 f~~~~~~~fpvl~d~~v~g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~g~~~~~~l~~~I~~  176 (199)
T PTZ00056         97 FNDKNKIKYNFFEPIEVNGENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSPRTEPLELEKKIAE  176 (199)
T ss_pred             HHHHcCCCceeeeeeeccCCccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeCCCCCHHHHHHHHHH
Confidence            3344433    0                           1    122    34555899999999998 78888888887


Q ss_pred             Hh
Q 031271          160 RR  161 (162)
Q Consensus       160 ~~  161 (162)
                      ++
T Consensus       177 ll  178 (199)
T PTZ00056        177 LL  178 (199)
T ss_pred             HH
Confidence            65

>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2

Probab=99.52  E-value=1.5e-13  Score=88.39  Aligned_cols=71  Identities=18%  Similarity=0.273  Sum_probs=58.4

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCC-cEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC--CHHHHHH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA--KKDELQM  155 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~-v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~--~~~~l~~  155 (162)
                      .|.||++||++|+.+.|.+++++++++. +.|+.+|   +++.+.+|++ .++|++++  ||+.+  +.|.  +.++|.+
T Consensus         2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~---~~~~a~~~~v-~~vPti~i--~G~~~--~~G~~~~~~~l~~   73 (76)
T TIGR00412         2 KIQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVT---DMNEILEAGV-TATPGVAV--DGELV--IMGKIPSKEEIKE   73 (76)
T ss_pred             EEEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeC---CHHHHHHcCC-CcCCEEEE--CCEEE--EEeccCCHHHHHH
Confidence            3789999999999999999999999975 7777766   3445788999 99999998  99888  5564  5577777


Q ss_pred             HH
Q 031271          156 KT  157 (162)
Q Consensus       156 ~l  157 (162)
                      ++
T Consensus        74 ~l   75 (76)
T TIGR00412        74 IL   75 (76)
T ss_pred             Hh
Confidence            65

This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.

>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins

Probab=99.52  E-value=1.3e-13  Score=92.86  Aligned_cols=85  Identities=33%  Similarity=0.506  Sum_probs=70.4

Q ss_pred             eEEecCCCeeeee---CceEEEEEecCCChhhhhhhHHHHHHHHhc--CCcEEEEEECCCc-------------------
Q 031271           62 VLNINDGGNVVFW---VLKVVIYYTAAWCGPCKFIEPYVKDFAAMY--TDVQFIKIDVDWL-------------------  117 (162)
Q Consensus        62 ~~~~~~~~~~~~~---~k~vvv~F~a~wC~~C~~~~~~l~~~~~~~--~~v~f~~vd~d~~-------------------  117 (162)
                      .+.+.+|+.+...   .++++|+||++||++|+...+.+.++.+++  +++.++.|+.|..                   
T Consensus         3 ~~~~~~g~~~~~~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~   82 (116)
T cd02966           3 SLPDLDGKPVSLSDLKGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVL   82 (116)
T ss_pred             cccCCCCCEeehHHcCCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceE
Confidence            3444555554333   377899999999999999999999999999  5699999999885                   


Q ss_pred             ----HHHHHhcCCCCCccEEEEE-cCCeEEEEEcC
Q 031271          118 ----PEAAKAFDLIDVLPTFVLV-KRGKEIDRVVG  147 (162)
Q Consensus       118 ----~~l~~~~~i~~~~Ptiv~~-~~Gk~i~~~~g  147 (162)
                          ..+.+.|++ ..+|+++++ ++|+++.++.|
T Consensus        83 ~~~~~~~~~~~~~-~~~P~~~l~d~~g~v~~~~~g  116 (116)
T cd02966          83 LDPDGELAKAYGV-RGLPTTFLIDRDGRIRARHVG  116 (116)
T ss_pred             EcCcchHHHhcCc-CccceEEEECCCCcEEEEecC
Confidence                678999999 999998888 68999988765

TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.

>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD

Probab=99.52  E-value=3.7e-13  Score=100.75  Aligned_cols=106  Identities=21%  Similarity=0.212  Sum_probs=79.6

Q ss_pred             eeeccccceeEEecCCCeeee-----eCceEEEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECC------------
Q 031271           53 CLIYCINEMVLNINDGGNVVF-----WVLKVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVD------------  115 (162)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~-----~~k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d------------  115 (162)
                      ......|++.+.+.+|+.+..     ..|+++|+||++||++|+.+.|.+.++.+++ ++.++.|..+            
T Consensus        47 ~vG~~aP~f~l~d~~G~~v~l~~~~~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~-~~~vv~Is~~~~~~~~~~~~~~  125 (189)
T TIGR02661        47 DVGDAAPIFNLPDFDGEPVRIGGSIAPGRPTLLMFTAPSCPVCDKLFPIIKSIARAE-ETDVVMISDGTPAEHRRFLKDH  125 (189)
T ss_pred             CCCCcCCCcEecCCCCCEEeccchhcCCCEEEEEEECCCChhHHHHHHHHHHHHHhc-CCcEEEEeCCCHHHHHHHHHhc
Confidence            344457889999999998765     3489999999999999999999999988765 4444444422            


Q ss_pred             --------CcHHHHHhcCCCCCccEEEEE-cCCeEEEEEcCCCHHHHHHHHHHH
Q 031271          116 --------WLPEAAKAFDLIDVLPTFVLV-KRGKEIDRVVGAKKDELQMKTEKR  160 (162)
Q Consensus       116 --------~~~~l~~~~~i~~~~Ptiv~~-~~Gk~i~~~~g~~~~~l~~~l~~~  160 (162)
                              ...++.+.|++ ..+|+.+++ ++|+++.+......+.++++++..
T Consensus       126 ~~~~~~~~~~~~i~~~y~v-~~~P~~~lID~~G~I~~~g~~~~~~~le~ll~~l  178 (189)
T TIGR02661       126 ELGGERYVVSAEIGMAFQV-GKIPYGVLLDQDGKIRAKGLTNTREHLESLLEAD  178 (189)
T ss_pred             CCCcceeechhHHHHhccC-CccceEEEECCCCeEEEccCCCCHHHHHHHHHHH
Confidence                    13467889999 999986666 789888763323667777777654

This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.

>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]

Probab=99.52  E-value=2.6e-14  Score=112.03  Aligned_cols=83  Identities=25%  Similarity=0.450  Sum_probs=75.8

Q ss_pred             eEEEEEecCCChhhhhhhHHHHHHHHhcCC----cEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCCCHHH
Q 031271           77 KVVIYYTAAWCGPCKFIEPYVKDFAAMYTD----VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDE  152 (162)
Q Consensus        77 ~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~----v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~~~~~  152 (162)
                      .++|.||||||++|+++.|.|.++..++++    +++.++|++.-+.++..|+| +++||+.++++|-.+++-.|...+.
T Consensus        45 iW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgi-qGYPTIk~~kgd~a~dYRG~R~Kd~  123 (468)
T KOG4277|consen   45 IWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGI-QGYPTIKFFKGDHAIDYRGGREKDA  123 (468)
T ss_pred             eEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhcc-CCCceEEEecCCeeeecCCCccHHH
Confidence            349999999999999999999999888865    89999999999999999999 9999999999999999887778999


Q ss_pred             HHHHHHHH
Q 031271          153 LQMKTEKR  160 (162)
Q Consensus       153 l~~~l~~~  160 (162)
                      ++++..+.
T Consensus       124 iieFAhR~  131 (468)
T KOG4277|consen  124 IIEFAHRC  131 (468)
T ss_pred             HHHHHHhc
Confidence            98887654

>PLN02399 phospholipid hydroperoxide glutathione peroxidase

Probab=99.52  E-value=2.4e-13  Score=104.94  Aligned_cols=109  Identities=16%  Similarity=0.146  Sum_probs=83.9

Q ss_pred             eeccccceeEEecCCCeeeee---CceEEEEEecCCChhhhhhhHHHHHHHHhcCC--cEEEEEECC--------Cc---
Q 031271           54 LIYCINEMVLNINDGGNVVFW---VLKVVIYYTAAWCGPCKFIEPYVKDFAAMYTD--VQFIKIDVD--------WL---  117 (162)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~---~k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~--v~f~~vd~d--------~~---  117 (162)
                      +....|++.+.+.+|+.+..+   .|++||+||++||++|+...|.|+++.++|.+  +.++.|+++        ..   
T Consensus        75 ~g~~aPdF~l~d~~G~~vsLsd~kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~ei  154 (236)
T PLN02399         75 TEKSVHDFTVKDIDGKDVALSKFKGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI  154 (236)
T ss_pred             cCCCCCceEEECCCCCEEeHHHhCCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHHHH
Confidence            334578899999999988654   38999999999999999999999999999964  888888863        11   


Q ss_pred             HHHH-HhcCC----C-----------------------------CCccEEEEE-cCCeEEEEEcCC-CHHHHHHHHHHHh
Q 031271          118 PEAA-KAFDL----I-----------------------------DVLPTFVLV-KRGKEIDRVVGA-KKDELQMKTEKRR  161 (162)
Q Consensus       118 ~~l~-~~~~i----~-----------------------------~~~Ptiv~~-~~Gk~i~~~~g~-~~~~l~~~l~~~~  161 (162)
                      ..++ +++++    .                             ...|+.+++ ++|+++.++.|. ++++|++.|++++
T Consensus       155 ~~f~~~~~g~~fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~~~le~~I~~lL  234 (236)
T PLN02399        155 KQFACTRFKAEFPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKLL  234 (236)
T ss_pred             HHHHHHhcCCCCccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCCHHHHHHHHHHHh
Confidence            1222 22222    0                             124766666 899999999999 8999999999876


Q ss_pred             C
Q 031271          162 N  162 (162)
Q Consensus       162 ~  162 (162)
                      +
T Consensus       235 ~  235 (236)
T PLN02399        235 A  235 (236)
T ss_pred             c
Confidence            3

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.52  E-value=2.2e-13  Score=124.05  Aligned_cols=104  Identities=18%  Similarity=0.264  Sum_probs=84.2

Q ss_pred             cccceeEEe--cCCCeeee----eCceEEEEEecCCChhhhhhhHHHHHHHHhcCC--cEEEEEEC--------------
Q 031271           57 CINEMVLNI--NDGGNVVF----WVLKVVIYYTAAWCGPCKFIEPYVKDFAAMYTD--VQFIKIDV--------------  114 (162)
Q Consensus        57 ~~~~~~~~~--~~~~~~~~----~~k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~--v~f~~vd~--------------  114 (162)
                      ..|++....  .+|..+..    ..|+|||+|||+||++|+...|.|+++.++|++  +.++.|..              
T Consensus       396 ~~p~f~~~~~~~~g~~~~l~~~lkGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~  475 (1057)
T PLN02919        396 KVPEFPPKLDWLNTAPLQFRRDLKGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRN  475 (1057)
T ss_pred             cCCCCcccccccCCccccchhhcCCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHH
Confidence            456766543  56765543    358999999999999999999999999999975  67777631              


Q ss_pred             -------------CCcHHHHHhcCCCCCccEEEEE-cCCeEEEEEcCC-CHHHHHHHHHHHh
Q 031271          115 -------------DWLPEAAKAFDLIDVLPTFVLV-KRGKEIDRVVGA-KKDELQMKTEKRR  161 (162)
Q Consensus       115 -------------d~~~~l~~~~~i~~~~Ptiv~~-~~Gk~i~~~~g~-~~~~l~~~l~~~~  161 (162)
                                   |....++++|++ .++|+++++ ++|+++.++.|. ..+.|.++|++++
T Consensus       476 ~~~~~~i~~pvv~D~~~~~~~~~~V-~~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l~~~l  536 (1057)
T PLN02919        476 AVLRYNISHPVVNDGDMYLWRELGV-SSWPTFAVVSPNGKLIAQLSGEGHRKDLDDLVEAAL  536 (1057)
T ss_pred             HHHHhCCCccEEECCchHHHHhcCC-CccceEEEECCCCeEEEEEecccCHHHHHHHHHHHH
Confidence                         224467889999 999999999 799999999998 7888988888764

>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors

Probab=99.51  E-value=1.8e-13  Score=98.47  Aligned_cols=70  Identities=21%  Similarity=0.425  Sum_probs=57.1

Q ss_pred             eCceEEEEEecCCChhhhhhhHHHHHHHHhcC---------CcEEEEEECCCc-------------------------HH
Q 031271           74 WVLKVVIYYTAAWCGPCKFIEPYVKDFAAMYT---------DVQFIKIDVDWL-------------------------PE  119 (162)
Q Consensus        74 ~~k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~---------~v~f~~vd~d~~-------------------------~~  119 (162)
                      ..|+|+|+|||+||++|+...|.|.++.+++.         ++.++.|+.|..                         ..
T Consensus        24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~  103 (146)
T cd03008          24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE  103 (146)
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence            34777999999999999999999998776442         478888887632                         24


Q ss_pred             HHHhcCCCCCccEEEEE-cCCeEEEE
Q 031271          120 AAKAFDLIDVLPTFVLV-KRGKEIDR  144 (162)
Q Consensus       120 l~~~~~i~~~~Ptiv~~-~~Gk~i~~  144 (162)
                      ++++|++ .++|+.+++ ++|+++.+
T Consensus       104 l~~~y~v-~~iPt~vlId~~G~Vv~~  128 (146)
T cd03008         104 LEAQFSV-EELPTVVVLKPDGDVLAA  128 (146)
T ss_pred             HHHHcCC-CCCCEEEEECCCCcEEee
Confidence            7788999 999998888 69999875

RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.

>PRK13728 conjugal transfer protein TrbB; Provisional

Probab=99.50  E-value=4.6e-13  Score=99.22  Aligned_cols=100  Identities=20%  Similarity=0.240  Sum_probs=77.8

Q ss_pred             ccceeEEecCCCeeeeeCceEEEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCc-------------HHHHHhc
Q 031271           58 INEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWL-------------PEAAKAF  124 (162)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~-------------~~l~~~~  124 (162)
                      .+++.+  .+|+.+..++-. +|+||++||++|++..|.+.+++++| ++.++.|++|..             ..+...|
T Consensus        55 ~~~f~l--~dG~~v~lsd~~-lV~FwaswCp~C~~e~P~L~~l~~~~-g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~  130 (181)
T PRK13728         55 PRWFRL--SNGRQVNLADWK-VVLFMQGHCPYCHQFDPVLKQLAQQY-GFSVFPYTLDGQGDTAFPEALPAPPDVMQTFF  130 (181)
T ss_pred             CCccCC--CCCCEeehhHce-EEEEECCCCHhHHHHHHHHHHHHHHc-CCEEEEEEeCCCCCCCCceEecCchhHHHHHh
Confidence            344555  488888777744 77899999999999999999999998 577777776632             2366788


Q ss_pred             CC-CCCccEEEEE-cCCeEE-EEEcCC-CHHHHHHHHHHHh
Q 031271          125 DL-IDVLPTFVLV-KRGKEI-DRVVGA-KKDELQMKTEKRR  161 (162)
Q Consensus       125 ~i-~~~~Ptiv~~-~~Gk~i-~~~~g~-~~~~l~~~l~~~~  161 (162)
                      ++ ...+|+.+++ ++|+++ ..+.|. +.++|++.|.+.+
T Consensus       131 g~~~~~iPttfLId~~G~i~~~~~~G~~~~~~L~~~I~~ll  171 (181)
T PRK13728        131 PNIPVATPTTFLVNVNTLEALPLLQGATDAAGFMARMDTVL  171 (181)
T ss_pred             CCCCCCCCeEEEEeCCCcEEEEEEECCCCHHHHHHHHHHHH
Confidence            83 1599987777 899886 578888 8999998888765

>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source

Probab=99.50  E-value=3.8e-13  Score=92.08  Aligned_cols=85  Identities=20%  Similarity=0.302  Sum_probs=64.7

Q ss_pred             cceeEEecCCCeeeee----CceEEEEEecCCChhhhhhhHHHHHHHHhcCC-cEEEEEECC---C--------------
Q 031271           59 NEMVLNINDGGNVVFW----VLKVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVD---W--------------  116 (162)
Q Consensus        59 ~~~~~~~~~~~~~~~~----~k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~-v~f~~vd~d---~--------------  116 (162)
                      |++.+.+.+|+.+..+    .++++|+||++||++|+.+.|.++++.+++.+ +.++.+.-+   +              
T Consensus         1 p~f~l~~~~G~~~~l~~~~~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~p   80 (114)
T cd02967           1 PTFDLTTIDGAPVRIGGISPGRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAEHQRFLKKHGLEAFP   80 (114)
T ss_pred             CCceeecCCCCEEEcccccCCCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCCCCCc
Confidence            5677888888877432    57899999999999999999999999888754 666655211   0              


Q ss_pred             ---cHHHHHhcCCCCCccEEEEE-cCCeEEEE
Q 031271          117 ---LPEAAKAFDLIDVLPTFVLV-KRGKEIDR  144 (162)
Q Consensus       117 ---~~~l~~~~~i~~~~Ptiv~~-~~Gk~i~~  144 (162)
                         ..++.++|++ ..+|+.+++ ++|+++.+
T Consensus        81 ~~~~~~~~~~~~~-~~~P~~~vid~~G~v~~~  111 (114)
T cd02967          81 YVLSAELGMAYQV-SKLPYAVLLDEAGVIAAK  111 (114)
T ss_pred             EEecHHHHhhcCC-CCcCeEEEECCCCeEEec
Confidence               1346778888 999998777 68887754

mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.

>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)

Probab=99.49  E-value=2.2e-13  Score=85.05  Aligned_cols=61  Identities=20%  Similarity=0.336  Sum_probs=55.9

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEE
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEI  142 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i  142 (162)
                      +..|+++||++|+.+.+.+++++..++++.|..+|++++++++++||+ .++|++++  +|+.+
T Consensus         3 v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~~~l~~~~~i-~~vPti~i--~~~~~   63 (67)
T cd02973           3 IEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAEFPDLADEYGV-MSVPAIVI--NGKVE   63 (67)
T ss_pred             EEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcccCHhHHHHcCC-cccCEEEE--CCEEE
Confidence            678999999999999999999998888899999999999999999999 99999876  66654

All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri

>TIGR02740 TraF-like TraF-like protein

Probab=99.49  E-value=4.6e-13  Score=105.49  Aligned_cols=84  Identities=17%  Similarity=0.304  Sum_probs=68.3

Q ss_pred             CceEEEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCC-----------cHHHHHhcCCCCCccEEEEEcC-CeEE
Q 031271           75 VLKVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDW-----------LPEAAKAFDLIDVLPTFVLVKR-GKEI  142 (162)
Q Consensus        75 ~k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~-----------~~~l~~~~~i~~~~Ptiv~~~~-Gk~i  142 (162)
                      +++++|+||++||++|+.+.|.|++++++| ++.++.|++|.           +..++++||| ..+|+++++++ |+.+
T Consensus       166 ~k~~Lv~F~AswCp~C~~~~P~L~~la~~y-g~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV-~~vPtl~Lv~~~~~~v  243 (271)
T TIGR02740       166 KKSGLFFFFKSDCPYCHQQAPILQAFEDRY-GIEVLPVSVDGGPLPGFPNARPDAGQAQQLKI-RTVPAVFLADPDPNQF  243 (271)
T ss_pred             CCeEEEEEECCCCccHHHHhHHHHHHHHHc-CcEEEEEeCCCCccccCCcccCCHHHHHHcCC-CcCCeEEEEECCCCEE
Confidence            366699999999999999999999999998 47777777764           3578999999 99999999953 5544


Q ss_pred             E-EEcCC-CHHHHHHHHHHH
Q 031271          143 D-RVVGA-KKDELQMKTEKR  160 (162)
Q Consensus       143 ~-~~~g~-~~~~l~~~l~~~  160 (162)
                      . ...|. +.++|.+.|...
T Consensus       244 ~~v~~G~~s~~eL~~~i~~~  263 (271)
T TIGR02740       244 TPIGFGVMSADELVDRILLA  263 (271)
T ss_pred             EEEEeCCCCHHHHHHHHHHH
Confidence            4 45587 899998887654

This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.

>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A

Probab=99.49  E-value=3e-13  Score=89.80  Aligned_cols=65  Identities=35%  Similarity=0.692  Sum_probs=53.8

Q ss_pred             ceEEEEEecCCChhhhhhhHHHHHHHHhcC---CcEEEEEECCCc-------------------------HHHHHhcCCC
Q 031271           76 LKVVIYYTAAWCGPCKFIEPYVKDFAAMYT---DVQFIKIDVDWL-------------------------PEAAKAFDLI  127 (162)
Q Consensus        76 k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~---~v~f~~vd~d~~-------------------------~~l~~~~~i~  127 (162)
                      |+++|+||++||++|++..|.|.++.+.|+   ++.|+.|..|..                         ..+.+.|++ 
T Consensus         2 K~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i-   80 (95)
T PF13905_consen    2 KPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI-   80 (95)
T ss_dssp             SEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT--
T ss_pred             CEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC-
Confidence            567999999999999999999999999999   499999988743                         258889999 


Q ss_pred             CCccEEEEE-cCCeE
Q 031271          128 DVLPTFVLV-KRGKE  141 (162)
Q Consensus       128 ~~~Ptiv~~-~~Gk~  141 (162)
                      ..+|+++++ ++|++
T Consensus        81 ~~iP~~~lld~~G~I   95 (95)
T PF13905_consen   81 NGIPTLVLLDPDGKI   95 (95)
T ss_dssp             TSSSEEEEEETTSBE
T ss_pred             CcCCEEEEECCCCCC
Confidence            999998888 77864

...

>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides

Probab=99.48  E-value=5.6e-13  Score=88.24  Aligned_cols=70  Identities=16%  Similarity=0.281  Sum_probs=62.7

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDEL  153 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l  153 (162)
                      +..|+++||++|....+.+++++..++++.+..+|+++.++++.+|+| .++|++++  ||+.+..  |. +.+++
T Consensus        16 i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~~e~a~~~~V-~~vPt~vi--dG~~~~~--G~~~~~e~   86 (89)
T cd03026          16 FETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGALFQDEVEERGI-MSVPAIFL--NGELFGF--GRMTLEEI   86 (89)
T ss_pred             EEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHhCHHHHHHcCC-ccCCEEEE--CCEEEEe--CCCCHHHH
Confidence            788999999999999999999999999999999999999999999999 99999975  8887764  65 55554

AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.

>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=99.48  E-value=7.6e-14  Score=109.27  Aligned_cols=87  Identities=22%  Similarity=0.391  Sum_probs=75.5

Q ss_pred             eCceEEEEEecCCChhhhhhhHHHHHHHH----hcCC--cEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEE-EEc
Q 031271           74 WVLKVVIYYTAAWCGPCKFIEPYVKDFAA----MYTD--VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEID-RVV  146 (162)
Q Consensus        74 ~~k~vvv~F~a~wC~~C~~~~~~l~~~~~----~~~~--v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~-~~~  146 (162)
                      +...|+|.|||+||+.++++.|.+++.+.    ++|+  +.+..||++++..++.+|.| ..+||+-+|+||.... .+-
T Consensus        12 s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I-~KyPTlKvfrnG~~~~rEYR   90 (375)
T KOG0912|consen   12 SNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHI-NKYPTLKVFRNGEMMKREYR   90 (375)
T ss_pred             cceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhcc-ccCceeeeeeccchhhhhhc
Confidence            33445999999999999999999987765    4564  99999999999999999999 9999999999999887 445


Q ss_pred             CC-CHHHHHHHHHHHh
Q 031271          147 GA-KKDELQMKTEKRR  161 (162)
Q Consensus       147 g~-~~~~l~~~l~~~~  161 (162)
                      |. +.+.|.++|++..
T Consensus        91 g~RsVeaL~efi~kq~  106 (375)
T KOG0912|consen   91 GQRSVEALIEFIEKQL  106 (375)
T ss_pred             cchhHHHHHHHHHHHh
Confidence            65 8999999998764

>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic

Probab=99.48  E-value=3.3e-13  Score=112.32  Aligned_cols=87  Identities=25%  Similarity=0.448  Sum_probs=73.6

Q ss_pred             eeeCceEEEEEecCCChhhhhhhHHHHHHHHhcCC----cEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEE--EEE
Q 031271           72 VFWVLKVVIYYTAAWCGPCKFIEPYVKDFAAMYTD----VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEI--DRV  145 (162)
Q Consensus        72 ~~~~k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~----v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i--~~~  145 (162)
                      ...+++|+|+||++||++|+.+.|.++++++.+.+    +.|+.+|++.+. +.. +++ .++||+++|++|+..  ..+
T Consensus       361 ~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~-~~~-~~i-~~~Pt~~~~~~~~~~~~~~~  437 (462)
T TIGR01130       361 LDETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND-VPP-FEV-EGFPTIKFVPAGKKSEPVPY  437 (462)
T ss_pred             ccCCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCc-cCC-CCc-cccCEEEEEeCCCCcCceEe
Confidence            34568999999999999999999999999998864    889999999874 444 999 999999999877653  456


Q ss_pred             cCC-CHHHHHHHHHHHh
Q 031271          146 VGA-KKDELQMKTEKRR  161 (162)
Q Consensus       146 ~g~-~~~~l~~~l~~~~  161 (162)
                      .|. +.+.|.++|.++.
T Consensus       438 ~g~~~~~~l~~~l~~~~  454 (462)
T TIGR01130       438 DGDRTLEDFSKFIAKHA  454 (462)
T ss_pred             cCcCCHHHHHHHHHhcC
Confidence            666 8999999998864

Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).

>PLN02412 probable glutathione peroxidase

Probab=99.45  E-value=1.7e-12  Score=95.40  Aligned_cols=107  Identities=16%  Similarity=0.150  Sum_probs=82.9

Q ss_pred             eccccceeEEecCCCeeeee---CceEEEEEecCCChhhhhhhHHHHHHHHhcCC--cEEEEEECC--------CcHHH-
Q 031271           55 IYCINEMVLNINDGGNVVFW---VLKVVIYYTAAWCGPCKFIEPYVKDFAAMYTD--VQFIKIDVD--------WLPEA-  120 (162)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~---~k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~--v~f~~vd~d--------~~~~l-  120 (162)
                      ....|++.+.+.+|+.+..+   .|++||+||++||++|+...|.|.++.++|.+  +.++.|+.+        ...++ 
T Consensus         6 ~~~~pdf~l~d~~G~~v~l~~~~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~~   85 (167)
T PLN02412          6 PKSIYDFTVKDIGGNDVSLNQYKGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEIQ   85 (167)
T ss_pred             CCCCCceEEECCCCCEEeHHHhCCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHHHH
Confidence            35678899999999987654   48999999999999999999999999999974  888888753        21121 


Q ss_pred             ---HHhcC----------------------------------CCCCccEEEEE-cCCeEEEEEcCC-CHHHHHHHHHHHh
Q 031271          121 ---AKAFD----------------------------------LIDVLPTFVLV-KRGKEIDRVVGA-KKDELQMKTEKRR  161 (162)
Q Consensus       121 ---~~~~~----------------------------------i~~~~Ptiv~~-~~Gk~i~~~~g~-~~~~l~~~l~~~~  161 (162)
                         .++++                                  + ...|+.+++ ++|+++.++.|. +++.|++.|++++
T Consensus        86 ~~~~~~~~~~fpvl~~~d~~g~~~~~~~~~~~~~~~~~~~~~v-~~~p~tflId~~G~vv~~~~g~~~~~~l~~~i~~~l  164 (167)
T PLN02412         86 QTVCTRFKAEFPIFDKVDVNGKNTAPLYKYLKAEKGGLFGDAI-KWNFTKFLVSKEGKVVQRYAPTTSPLKIEKDIQNLL  164 (167)
T ss_pred             HHHHHccCCCCceEeEEeeCCCCCCHHHHHHHhhCCCCCCCCc-CCCCeeEEECCCCcEEEEECCCCCHHHHHHHHHHHH
Confidence               22222                                  2 335776666 899999999999 8889999998876


Q ss_pred             C
Q 031271          162 N  162 (162)
Q Consensus       162 ~  162 (162)
                      +
T Consensus       165 ~  165 (167)
T PLN02412        165 G  165 (167)
T ss_pred             h
Confidence            3

>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX

Probab=99.43  E-value=7.9e-13  Score=93.28  Aligned_cols=69  Identities=23%  Similarity=0.564  Sum_probs=55.9

Q ss_pred             ceEEEEEecCCChhhhhhhHHHHHHHHhcC----CcEEEEEECCCc-------------------------HHHHHhcCC
Q 031271           76 LKVVIYYTAAWCGPCKFIEPYVKDFAAMYT----DVQFIKIDVDWL-------------------------PEAAKAFDL  126 (162)
Q Consensus        76 k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~----~v~f~~vd~d~~-------------------------~~l~~~~~i  126 (162)
                      |+|+|+||++||++|+.+.|.++++.+++.    ++.++.|++|..                         ..+++.|++
T Consensus        18 k~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v   97 (132)
T cd02964          18 KTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQFKV   97 (132)
T ss_pred             CEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHcCC
Confidence            566999999999999999999999887664    467777777643                         245678999


Q ss_pred             CCCccEEEEE-cCCeEEEEE
Q 031271          127 IDVLPTFVLV-KRGKEIDRV  145 (162)
Q Consensus       127 ~~~~Ptiv~~-~~Gk~i~~~  145 (162)
                       .++|+++++ ++|+++.+.
T Consensus        98 -~~iPt~~lid~~G~iv~~~  116 (132)
T cd02964          98 -EGIPTLVVLKPDGDVVTTN  116 (132)
T ss_pred             -CCCCEEEEECCCCCEEchh
Confidence             999999988 589887654

Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.

>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate

Probab=99.40  E-value=1.7e-12  Score=93.76  Aligned_cols=98  Identities=18%  Similarity=0.271  Sum_probs=73.5

Q ss_pred             ccceeEEecCCCeeeeeC---ceEEEEEecCCChhhhhhhHHHHHHHHhcC--CcEEEEEECCC-----------cHHHH
Q 031271           58 INEMVLNINDGGNVVFWV---LKVVIYYTAAWCGPCKFIEPYVKDFAAMYT--DVQFIKIDVDW-----------LPEAA  121 (162)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~---k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~--~v~f~~vd~d~-----------~~~l~  121 (162)
                      .+++.+.+.+|+.+..++   |+|+|+||++||+ |....|.|+++.++|.  ++.++.|..+.           ...++
T Consensus         2 ~~~f~l~d~~G~~v~l~~~~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~f~   80 (152)
T cd00340           2 IYDFSVKDIDGEPVSLSKYKGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEIKEFC   80 (152)
T ss_pred             cceeEEECCCCCEEeHHHhCCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHHHHHH
Confidence            578899999999886544   8999999999999 9999999999999996  38888886531           11233


Q ss_pred             Hh-cCC----------------------CCCcc-----------EEEEE-cCCeEEEEEcCC-CHHHHHHH
Q 031271          122 KA-FDL----------------------IDVLP-----------TFVLV-KRGKEIDRVVGA-KKDELQMK  156 (162)
Q Consensus       122 ~~-~~i----------------------~~~~P-----------tiv~~-~~Gk~i~~~~g~-~~~~l~~~  156 (162)
                      +. +++                      ...+|           +.+++ ++|+++.++.|. +++.|++.
T Consensus        81 ~~~~~~~fp~~~d~d~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~~G~~~~~~l~~~  151 (152)
T cd00340          81 ETNYGVTFPMFAKIDVNGENAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRFAPTTDPEELEKD  151 (152)
T ss_pred             HHhcCCCceeeeeEeccCCCCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEECCCCCHHHHHhc
Confidence            32 331                      03456           44445 899999999998 78777654

GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.

>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus

Probab=99.39  E-value=1e-12  Score=92.45  Aligned_cols=89  Identities=9%  Similarity=0.139  Sum_probs=65.8

Q ss_pred             eechhhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhhhhhhHHH---HHHH
Q 031271           25 LQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYV---KDFA  101 (162)
Q Consensus        25 i~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~~~l---~~~~  101 (162)
                      |+-..+|++.++.|++++|++                                 +|+|+++||++|+.|...+   .++.
T Consensus         6 i~W~~~~eeal~~Ak~~~Kpv---------------------------------mv~f~sdwC~~Ck~l~k~~f~~~eV~   52 (130)
T cd02960           6 IIWVQTYEEGLYKAKKSNKPL---------------------------------MVIHHLEDCPHSQALKKAFAEHKEIQ   52 (130)
T ss_pred             ccchhhHHHHHHHHHHCCCeE---------------------------------EEEEeCCcCHhHHHHHHHhhCCHHHH
Confidence            334458999999999999999                                 9999999999999998865   5555


Q ss_pred             HhcC-CcEEEEEECCCcHHHHHhcCCCCCccEEEEE-cCCeEEEEEcCC
Q 031271          102 AMYT-DVQFIKIDVDWLPEAAKAFDLIDVLPTFVLV-KRGKEIDRVVGA  148 (162)
Q Consensus       102 ~~~~-~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~-~~Gk~i~~~~g~  148 (162)
                      +... ++..+.++.+....-....+  .++||++|+ ++|+++.++.|.
T Consensus        53 ~~l~~~Fv~V~l~~d~td~~~~~~g--~~vPtivFld~~g~vi~~i~Gy   99 (130)
T cd02960          53 KLAQEDFIMLNLVHETTDKNLSPDG--QYVPRIMFVDPSLTVRADITGR   99 (130)
T ss_pred             HHHHhCeEEEEEEeccCCCCcCccC--cccCeEEEECCCCCCccccccc
Confidence            5442 46666676652211111234  589999999 799999888776

They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.

>TIGR02540 gpx7 putative glutathione peroxidase Gpx7

Probab=99.39  E-value=5e-12  Score=91.36  Aligned_cols=101  Identities=10%  Similarity=0.103  Sum_probs=76.7

Q ss_pred             ceeEEecCCCeeeeeC---ceEEEEEecCCChhhhhhhHHHHHHHHhcC--CcEEEEEEC--------CCc---HHHHHh
Q 031271           60 EMVLNINDGGNVVFWV---LKVVIYYTAAWCGPCKFIEPYVKDFAAMYT--DVQFIKIDV--------DWL---PEAAKA  123 (162)
Q Consensus        60 ~~~~~~~~~~~~~~~~---k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~--~v~f~~vd~--------d~~---~~l~~~  123 (162)
                      ++.+.+.+|+.+..++   |+++|+||++||++|+...|.+.++.++|.  ++.++.|+.        +..   ..++++
T Consensus         4 ~f~l~~~~G~~~~l~~~~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~f~~~   83 (153)
T TIGR02540         4 SFEVKDARGRTVSLEKYRGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIESFARR   83 (153)
T ss_pred             cceeECCCCCEecHHHhCCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHHHHHH
Confidence            4678888888876544   888999999999999999999999999986  488888874        211   122322


Q ss_pred             -cCC-------------------------CCCcc-----EEEEEcCCeEEEEEcCC-CHHHHHHHHHHH
Q 031271          124 -FDL-------------------------IDVLP-----TFVLVKRGKEIDRVVGA-KKDELQMKTEKR  160 (162)
Q Consensus       124 -~~i-------------------------~~~~P-----tiv~~~~Gk~i~~~~g~-~~~~l~~~l~~~  160 (162)
                       +++                         ...+|     ++++-++|+++.++.|. +.+.|.+.|++.
T Consensus        84 ~~~~~fp~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~~~g~~~~~~l~~~i~~l  152 (153)
T TIGR02540        84 NYGVTFPMFSKIKILGSEAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEEPVEEIRPEITAL  152 (153)
T ss_pred             hcCCCCCccceEecCCCCCCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEEECCCCCHHHHHHHHHHh
Confidence             222                         02478     45555999999999998 889999988875

This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.

>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]

Probab=99.38  E-value=1.5e-12  Score=108.81  Aligned_cols=98  Identities=23%  Similarity=0.351  Sum_probs=75.1

Q ss_pred             eeEEecCCC-eeeeeCceEEEEEecCCChhhhhhhHHHHHHHHhcCC---cEEEEEECCCcHHHHHhcCCCCCccEEEEE
Q 031271           61 MVLNINDGG-NVVFWVLKVVIYYTAAWCGPCKFIEPYVKDFAAMYTD---VQFIKIDVDWLPEAAKAFDLIDVLPTFVLV  136 (162)
Q Consensus        61 ~~~~~~~~~-~~~~~~k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~---v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~  136 (162)
                      ..+-..+.+ .+....|.|+|.||||||++|+++.|.++++++.|.+   +.+.++|.+.|.-  ....+ .++||+.++
T Consensus       369 kvvVgknfd~iv~de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTaNd~--~~~~~-~~fPTI~~~  445 (493)
T KOG0190|consen  369 KVVVGKNFDDIVLDEGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATANDV--PSLKV-DGFPTILFF  445 (493)
T ss_pred             EEEeecCHHHHhhccccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEeccccccC--ccccc-cccceEEEe
Confidence            333344444 3355669999999999999999999999999999864   9999999998842  34567 889999999


Q ss_pred             cCCe--EEEEEcCC-CHHHHHHHHHHHh
Q 031271          137 KRGK--EIDRVVGA-KKDELQMKTEKRR  161 (162)
Q Consensus       137 ~~Gk--~i~~~~g~-~~~~l~~~l~~~~  161 (162)
                      +.|.  ..-.+.|. +.+.|..+++++.
T Consensus       446 pag~k~~pv~y~g~R~le~~~~fi~~~a  473 (493)
T KOG0190|consen  446 PAGHKSNPVIYNGDRTLEDLKKFIKKSA  473 (493)
T ss_pred             cCCCCCCCcccCCCcchHHHHhhhccCC
Confidence            7654  23334555 8999999988653

>PRK11509 hydrogenase-1 operon protein HyaE; Provisional

Probab=99.38  E-value=1e-11  Score=87.53  Aligned_cols=82  Identities=11%  Similarity=0.046  Sum_probs=74.4

Q ss_pred             EEEEecC--CChhhhhhhHHHHHHHHhcC-C-cEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHH
Q 031271           79 VIYYTAA--WCGPCKFIEPYVKDFAAMYT-D-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDEL  153 (162)
Q Consensus        79 vv~F~a~--wC~~C~~~~~~l~~~~~~~~-~-v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l  153 (162)
                      +|+|-.+  -++.+....-+|++++++|+ + +.|++||+|++++++.+||| .++||+++|+||+.+.++.|. +.+.+
T Consensus        38 vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~LA~~fgV-~siPTLl~FkdGk~v~~i~G~~~k~~l  116 (132)
T PRK11509         38 VVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGV-FRFPATLVFTGGNYRGVLNGIHPWAEL  116 (132)
T ss_pred             EEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHHHHHHcCC-ccCCEEEEEECCEEEEEEeCcCCHHHH
Confidence            5666544  67888888889999999998 3 89999999999999999999 999999999999999999998 89999


Q ss_pred             HHHHHHHh
Q 031271          154 QMKTEKRR  161 (162)
Q Consensus       154 ~~~l~~~~  161 (162)
                      .++|++++
T Consensus       117 ~~~I~~~L  124 (132)
T PRK11509        117 INLMRGLV  124 (132)
T ss_pred             HHHHHHHh
Confidence            99999876

>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain

Probab=99.38  E-value=4.6e-12  Score=88.60  Aligned_cols=72  Identities=19%  Similarity=0.311  Sum_probs=59.9

Q ss_pred             ceEEEEEecCCChhhhhhhHHHHHHHHhcCC--cEEEEEECC---------------------------CcHHHHHhcCC
Q 031271           76 LKVVIYYTAAWCGPCKFIEPYVKDFAAMYTD--VQFIKIDVD---------------------------WLPEAAKAFDL  126 (162)
Q Consensus        76 k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~--v~f~~vd~d---------------------------~~~~l~~~~~i  126 (162)
                      |+++|+||++||++|+...|.|+++.++|.+  +.++.|+.+                           ....+.+.|++
T Consensus        24 k~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~~v  103 (126)
T cd03012          24 KVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRAYGN  103 (126)
T ss_pred             CEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHHhCC
Confidence            5569999999999999999999999999974  777777541                           22357778999


Q ss_pred             CCCccEEEEE-cCCeEEEEEcCC
Q 031271          127 IDVLPTFVLV-KRGKEIDRVVGA  148 (162)
Q Consensus       127 ~~~~Ptiv~~-~~Gk~i~~~~g~  148 (162)
                       ..+|+++++ ++|+++.++.|.
T Consensus       104 -~~~P~~~vid~~G~v~~~~~G~  125 (126)
T cd03012         104 -QYWPALYLIDPTGNVRHVHFGE  125 (126)
T ss_pred             -CcCCeEEEECCCCcEEEEEecC
Confidence             999998888 799999988774

Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.

>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=99.37  E-value=2.3e-12  Score=108.88  Aligned_cols=114  Identities=18%  Similarity=0.293  Sum_probs=93.4

Q ss_pred             CCCcccCCCce-eEeechhhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhh
Q 031271           12 HGFIHAKTPLV-MELQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPC   90 (162)
Q Consensus        12 ~~~~~~~~~~v-~~i~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C   90 (162)
                      +..+..+++.. +.+++..++++.+++++  +|+|                                 +|+|||+||-.|
T Consensus       445 ~~~~~~~~~~~~q~~s~~~~L~~~la~~~--~~pV---------------------------------mlDfyAdWCvtC  489 (569)
T COG4232         445 EAAQSVSHGEFWQPISPLAELDQALAEAK--AKPV---------------------------------MLDFYADWCVTC  489 (569)
T ss_pred             ccCCCCccchhhhccCCHHHHHHHHHhCC--CCcE---------------------------------EEeeehhHHHHh
Confidence            34444455555 67777779999998754  3688                                 999999999999


Q ss_pred             hhhhHHH---HHHHHhcCCcEEEEEECCCc----HHHHHhcCCCCCccEEEEEc-CCeEEEEEcCC-CHHHHHHHHHHHh
Q 031271           91 KFIEPYV---KDFAAMYTDVQFIKIDVDWL----PEAAKAFDLIDVLPTFVLVK-RGKEIDRVVGA-KKDELQMKTEKRR  161 (162)
Q Consensus        91 ~~~~~~l---~~~~~~~~~v~f~~vd~d~~----~~l~~~~~i~~~~Ptiv~~~-~Gk~i~~~~g~-~~~~l~~~l~~~~  161 (162)
                      +.+++..   .+.+.+.+++..+++|++++    .++.++|++ -++|++++|. +|++.....|. +.+.+++++++..
T Consensus       490 K~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk~~~~-~G~P~~~ff~~~g~e~~~l~gf~~a~~~~~~l~~~~  568 (569)
T COG4232         490 KENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLKRLGV-FGVPTYLFFGPQGSEPEILTGFLTADAFLEHLERAA  568 (569)
T ss_pred             HhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHHHcCC-CCCCEEEEECCCCCcCcCCcceecHHHHHHHHHHhc
Confidence            9999977   55666778999999999865    468899999 9999999995 88888778898 9999999998764

>smart00594 UAS UAS domain

Probab=99.36  E-value=1.1e-11  Score=86.59  Aligned_cols=95  Identities=18%  Similarity=0.266  Sum_probs=77.8

Q ss_pred             hhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhhhhhhHHH---HHHHHhcC
Q 031271           29 HQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYV---KDFAAMYT  105 (162)
Q Consensus        29 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~~~l---~~~~~~~~  105 (162)
                      ..|++.+++|+..+|++                                 +|+|+++||++|..+....   .++.+.+.
T Consensus        14 gs~~~a~~~Ak~~~K~~---------------------------------lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~   60 (122)
T smart00594       14 GSLEAAKQEASRQRRLL---------------------------------WLYLHSQDSPDSQVFNRDVLCNEAVKSLIR   60 (122)
T ss_pred             CCHHHHHHHHHhhcCCE---------------------------------EEEEeCCCCchHHHHHHHHccCHHHHHHHH
Confidence            57899999999999999                                 9999999999999987754   55555554


Q ss_pred             -CcEEEEEECC--CcHHHHHhcCCCCCccEEEEE-cCC-----eEEEEEcCC-CHHHHHHHH
Q 031271          106 -DVQFIKIDVD--WLPEAAKAFDLIDVLPTFVLV-KRG-----KEIDRVVGA-KKDELQMKT  157 (162)
Q Consensus       106 -~v~f~~vd~d--~~~~l~~~~~i~~~~Ptiv~~-~~G-----k~i~~~~g~-~~~~l~~~l  157 (162)
                       ++.+..+|++  +...++.+|++ .++|+++++ ++|     +.+.++.|. ++++|...|
T Consensus        61 ~~fv~~~~dv~~~eg~~l~~~~~~-~~~P~~~~l~~~~g~~~~~~~~~~~G~~~~~~l~~~l  121 (122)
T smart00594       61 ENFIFWQVDVDTSEGQRVSQFYKL-DSFPYVAIVDPRTGQRVIEWVGVVEGEISPEELMTFL  121 (122)
T ss_pred             cCEEEEEecCCChhHHHHHHhcCc-CCCCEEEEEecCCCceeEEEeccccCCCCHHHHHHhh
Confidence             4777778876  44578999999 999999988 565     467788898 899998776

>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs

Probab=99.33  E-value=2.4e-11  Score=89.20  Aligned_cols=104  Identities=22%  Similarity=0.258  Sum_probs=81.0

Q ss_pred             cccceeEEecCCCeeee----eCceEEEEEecCCChhhhhhhHHHHHHHHhcC--CcEEEEEECCC--------------
Q 031271           57 CINEMVLNINDGGNVVF----WVLKVVIYYTAAWCGPCKFIEPYVKDFAAMYT--DVQFIKIDVDW--------------  116 (162)
Q Consensus        57 ~~~~~~~~~~~~~~~~~----~~k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~--~v~f~~vd~d~--------------  116 (162)
                      ..|++.+.+.+|+.+..    .++++||+||++||+.|....+.+.++.++|+  ++.|+.|..|.              
T Consensus         3 ~~p~f~l~~~~g~~v~l~~~~~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~   82 (171)
T cd02969           3 PAPDFSLPDTDGKTYSLADFADGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKA   82 (171)
T ss_pred             cCCCccccCCCCCEEeHHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHH
Confidence            35678888888887743    34789999999999999999999999999997  48888887753              


Q ss_pred             ---------------cHHHHHhcCCCCCccEEEEE-cCCeEEEEEc---------C-CCHHHHHHHHHHHh
Q 031271          117 ---------------LPEAAKAFDLIDVLPTFVLV-KRGKEIDRVV---------G-AKKDELQMKTEKRR  161 (162)
Q Consensus       117 ---------------~~~l~~~~~i~~~~Ptiv~~-~~Gk~i~~~~---------g-~~~~~l~~~l~~~~  161 (162)
                                     ...+++.|++ ..+|+++++ ++|+++.+..         + .+...+.+.|+..+
T Consensus        83 ~~~~~~~~~~~l~D~~~~~~~~~~v-~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l  152 (171)
T cd02969          83 KAKEHGYPFPYLLDETQEVAKAYGA-ACTPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALL  152 (171)
T ss_pred             HHHHCCCCceEEECCchHHHHHcCC-CcCCcEEEECCCCeEEEeecccCCcccccccccHHHHHHHHHHHH
Confidence                           1246778999 999988888 6898886531         1 14577888887664

Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.

>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626

Probab=99.33  E-value=2.3e-11  Score=90.52  Aligned_cols=78  Identities=17%  Similarity=0.101  Sum_probs=60.4

Q ss_pred             CceEEEEEecCCChhhhhhhHHHHHHHHhcCCcEE------EEEECCC-----------------------------cHH
Q 031271           75 VLKVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQF------IKIDVDW-----------------------------LPE  119 (162)
Q Consensus        75 ~k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f------~~vd~d~-----------------------------~~~  119 (162)
                      .|+++|+|||+||++|+...|.++++..+  ++.+      ..||.|+                             ...
T Consensus        59 GKV~lvn~~Aswc~~c~~e~P~l~~l~~~--~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~g~  136 (184)
T TIGR01626        59 GKVRVVHHIAGRTSAKEXNASLIDAIKAA--KFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDKGA  136 (184)
T ss_pred             CCEEEEEEEecCCChhhccchHHHHHHHc--CCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCcch
Confidence            48899999999999999999999999653  3444      5555542                             234


Q ss_pred             HHHhcCCCCCccEE-EEE-cCCeEEEEEcCC-CHHHHHH
Q 031271          120 AAKAFDLIDVLPTF-VLV-KRGKEIDRVVGA-KKDELQM  155 (162)
Q Consensus       120 l~~~~~i~~~~Pti-v~~-~~Gk~i~~~~g~-~~~~l~~  155 (162)
                      ++..|++ .++|+. +++ ++|+++.++.|. +.+++++
T Consensus       137 v~~~~gv-~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~  174 (184)
T TIGR01626       137 VKNAWQL-NSEDSAIIVLDKTGKVKFVKEGALSDSDIQT  174 (184)
T ss_pred             HHHhcCC-CCCCceEEEECCCCcEEEEEeCCCCHHHHHH
Confidence            6678999 999855 444 899999999998 7766655

This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.

>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.29  E-value=1.7e-11  Score=100.96  Aligned_cols=88  Identities=22%  Similarity=0.350  Sum_probs=74.6

Q ss_pred             eeeCceEEEEEecCCChhhhhhhHHHHHHHHhcCC-cEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-C
Q 031271           72 VFWVLKVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-K  149 (162)
Q Consensus        72 ~~~~k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~-v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~  149 (162)
                      ...+++++|.||++||++|+.+.|.+.+++..+.+ +.+..||++.+.+++..|+| .++||+.+|..|.....+.|. +
T Consensus        44 ~~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~~~~~~y~i-~gfPtl~~f~~~~~~~~~~~~~~  122 (383)
T KOG0191|consen   44 LKDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEHKDLCEKYGI-QGFPTLKVFRPGKKPIDYSGPRN  122 (383)
T ss_pred             hccCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhhHHHHHhcCC-ccCcEEEEEcCCCceeeccCccc
Confidence            34446669999999999999999999999999988 99999999999999999999 999999999888444444555 7


Q ss_pred             HHHHHHHHHHH
Q 031271          150 KDELQMKTEKR  160 (162)
Q Consensus       150 ~~~l~~~l~~~  160 (162)
                      .+.+..++...
T Consensus       123 ~~~~~~~~~~~  133 (383)
T KOG0191|consen  123 AESLAEFLIKE  133 (383)
T ss_pred             HHHHHHHHHHh
Confidence            88887776653

>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx)

Probab=99.29  E-value=4.2e-11  Score=85.22  Aligned_cols=100  Identities=15%  Similarity=0.102  Sum_probs=77.7

Q ss_pred             cccceeEEecCCCeeeee---CceEEEEEecCC-ChhhhhhhHHHHHHHHhcCCcEEEEEECCCc---------------
Q 031271           57 CINEMVLNINDGGNVVFW---VLKVVIYYTAAW-CGPCKFIEPYVKDFAAMYTDVQFIKIDVDWL---------------  117 (162)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~---~k~vvv~F~a~w-C~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~---------------  117 (162)
                      ..|++.+.+.+|+.+..+   .|+++|+||+.| |++|+...+.|.++.++++++.++.|+.|..               
T Consensus         5 ~aP~f~l~~~~g~~~~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~   84 (143)
T cd03014           5 KAPDFTLVTSDLSEVSLADFAGKVKVISVFPSIDTPVCATQTKRFNKEAAKLDNTVVLTISADLPFAQKRWCGAEGVDNV   84 (143)
T ss_pred             CCCCcEEECCCCcEEeHHHhCCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcCCCEEEEEECCCHHHHHHHHHhcCCCCc
Confidence            457889999999877654   489999999998 6999999999999999998899998888521               


Q ss_pred             --------HHHHHhcCCCCC------ccEEEEE-cCCeEEEEEcCC---CHHHHHHHH
Q 031271          118 --------PEAAKAFDLIDV------LPTFVLV-KRGKEIDRVVGA---KKDELQMKT  157 (162)
Q Consensus       118 --------~~l~~~~~i~~~------~Ptiv~~-~~Gk~i~~~~g~---~~~~l~~~l  157 (162)
                              ..+++.||+ ..      .|+.+++ ++|+++....|.   +...+++.|
T Consensus        85 ~~l~D~~~~~~~~~~gv-~~~~~~~~~~~~~iid~~G~I~~~~~~~~~~~~~~~~~~~  141 (143)
T cd03014          85 TTLSDFRDHSFGKAYGV-LIKDLGLLARAVFVIDENGKVIYVELVPEITDEPDYEAAL  141 (143)
T ss_pred             eEeecCcccHHHHHhCC-eeccCCccceEEEEEcCCCeEEEEEECCCcccCCCHHHHh
Confidence                    346677777 43      6776666 799999988865   344555444

Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based

>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides

Probab=99.28  E-value=2.8e-11  Score=85.53  Aligned_cols=99  Identities=18%  Similarity=0.136  Sum_probs=77.8

Q ss_pred             ccceeEEecCCCeeeeeC---ceEEEEEe-cCCChhhhhhhHHHHHHHHhcC--CcEEEEEECCC---------------
Q 031271           58 INEMVLNINDGGNVVFWV---LKVVIYYT-AAWCGPCKFIEPYVKDFAAMYT--DVQFIKIDVDW---------------  116 (162)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~---k~vvv~F~-a~wC~~C~~~~~~l~~~~~~~~--~v~f~~vd~d~---------------  116 (162)
                      .|++.+.+.+|+.+..++   |+++|+|| +.||+.|....+.|.++.+.+.  ++.++.|..|.               
T Consensus         3 ~p~f~l~~~~g~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~   82 (140)
T cd03017           3 APDFTLPDQDGETVSLSDLRGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPF   82 (140)
T ss_pred             CCCccccCCCCCEEeHHHhCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCc
Confidence            467888888888775544   88999999 5899999999999999988774  48888887652               


Q ss_pred             ------cHHHHHhcCCCCCc---------cEEEEE-cCCeEEEEEcCC-CHHHHHHHH
Q 031271          117 ------LPEAAKAFDLIDVL---------PTFVLV-KRGKEIDRVVGA-KKDELQMKT  157 (162)
Q Consensus       117 ------~~~l~~~~~i~~~~---------Ptiv~~-~~Gk~i~~~~g~-~~~~l~~~l  157 (162)
                            ...+++.||+ ...         |+++++ ++|+++..+.|. ....+.+.+
T Consensus        83 ~~l~D~~~~~~~~~gv-~~~~~~~~~~~~p~~~lid~~G~v~~~~~g~~~~~~~~~~~  139 (140)
T cd03017          83 PLLSDPDGKLAKAYGV-WGEKKKKYMGIERSTFLIDPDGKIVKVWRKVKPKGHAEEVL  139 (140)
T ss_pred             eEEECCccHHHHHhCC-ccccccccCCcceeEEEECCCCEEEEEEecCCccchHHHHh
Confidence                  3357788998 877         887777 689999999998 555555543

The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w

>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional

Probab=99.28  E-value=8.8e-11  Score=86.22  Aligned_cols=105  Identities=14%  Similarity=0.082  Sum_probs=80.9

Q ss_pred             eeeccccceeEEecCCCeeeeeC---ceEEEEEecCC-ChhhhhhhHHHHHHHHhcCCcEEEEEECCC------------
Q 031271           53 CLIYCINEMVLNINDGGNVVFWV---LKVVIYYTAAW-CGPCKFIEPYVKDFAAMYTDVQFIKIDVDW------------  116 (162)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~---k~vvv~F~a~w-C~~C~~~~~~l~~~~~~~~~v~f~~vd~d~------------  116 (162)
                      ......|++.+.+.+|+.+..++   |+++|+||++| |++|....|.|.++.+++.++.++.|..|.            
T Consensus        19 ~~G~~~P~f~l~~~~g~~v~l~~~~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~~~~vv~vs~D~~~~~~~f~~~~~   98 (167)
T PRK00522         19 QVGDKAPDFTLVANDLSDVSLADFAGKRKVLNIFPSIDTGVCATSVRKFNQEAAELDNTVVLCISADLPFAQKRFCGAEG   98 (167)
T ss_pred             CCCCCCCCeEEEcCCCcEEehHHhCCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcCCcEEEEEeCCCHHHHHHHHHhCC
Confidence            34455788999999998775544   89999999999 999999999999999998778888887752            


Q ss_pred             -----------cHHHHHhcCCCCCcc---------EEEEE-cCCeEEEEEcCC------CHHHHHHHHH
Q 031271          117 -----------LPEAAKAFDLIDVLP---------TFVLV-KRGKEIDRVVGA------KKDELQMKTE  158 (162)
Q Consensus       117 -----------~~~l~~~~~i~~~~P---------tiv~~-~~Gk~i~~~~g~------~~~~l~~~l~  158 (162)
                                 ...+++.||+ ...|         +.+++ ++|+++..+.+.      +.++++++|+
T Consensus        99 ~~~~~~lsD~~~~~~~~~~gv-~~~~~~~~g~~~r~tfvId~~G~I~~~~~~~~~~~~~~~~~~l~~l~  166 (167)
T PRK00522         99 LENVITLSDFRDHSFGKAYGV-AIAEGPLKGLLARAVFVLDENNKVVYSELVPEITNEPDYDAALAALK  166 (167)
T ss_pred             CCCceEeecCCccHHHHHhCC-eecccccCCceeeEEEEECCCCeEEEEEECCCcCCCCCHHHHHHHhh
Confidence                       1267888998 7777         76666 799998887543      3455555543

>PTZ00256 glutathione peroxidase; Provisional

Probab=99.28  E-value=3.7e-11  Score=89.48  Aligned_cols=105  Identities=20%  Similarity=0.226  Sum_probs=78.7

Q ss_pred             cccceeEEecCCCeeeeeC---ceE-EEEEecCCChhhhhhhHHHHHHHHhcC--CcEEEEEECCC-------c-H---H
Q 031271           57 CINEMVLNINDGGNVVFWV---LKV-VIYYTAAWCGPCKFIEPYVKDFAAMYT--DVQFIKIDVDW-------L-P---E  119 (162)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~---k~v-vv~F~a~wC~~C~~~~~~l~~~~~~~~--~v~f~~vd~d~-------~-~---~  119 (162)
                      ..|++.+.+.+|+.+..++   |+| ++.+|++||++|+...|.|+++.++|.  ++.++.|++++       . .   .
T Consensus        19 ~~p~f~l~d~~G~~vsLs~~~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~~~~~~~   98 (183)
T PTZ00256         19 SFFEFEAIDIDGQLVQLSKFKGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWDEPEIKE   98 (183)
T ss_pred             cccceEeEcCCCCEEeHHHhCCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCCHHHHHH
Confidence            4688999999999886654   655 456699999999999999999999886  48888887531       0 1   1


Q ss_pred             H-HHhc------------------------------------CCCCCccE----EEEEcCCeEEEEEcCC-CHHHHHHHH
Q 031271          120 A-AKAF------------------------------------DLIDVLPT----FVLVKRGKEIDRVVGA-KKDELQMKT  157 (162)
Q Consensus       120 l-~~~~------------------------------------~i~~~~Pt----iv~~~~Gk~i~~~~g~-~~~~l~~~l  157 (162)
                      + .+++                                    ++ ..+|+    +++-++|+++.++.|. +.+.+++.|
T Consensus        99 f~~~~~~~~fpv~~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~-~~iP~~~~tflID~~G~Iv~~~~g~~~~~~l~~~I  177 (183)
T PTZ00256         99 YVQKKFNVDFPLFQKIEVNGENTHEIYKYLRRNSELFQNNTNEA-RQIPWNFAKFLIDGQGKVVKYFSPKVNPNEMIQDI  177 (183)
T ss_pred             HHHHhcCCCCCCceEEecCCCCCCHHHHHHHhhCCCCcCccccC-cccCcceEEEEECCCCCEEEEECCCCCHHHHHHHH
Confidence            1 1121                                    33 46783    5555899999999998 888898888


Q ss_pred             HHHhC
Q 031271          158 EKRRN  162 (162)
Q Consensus       158 ~~~~~  162 (162)
                      .+.++
T Consensus       178 ~~ll~  182 (183)
T PTZ00256        178 EKLLN  182 (183)
T ss_pred             HHHhc
Confidence            87753

>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells

Probab=99.28  E-value=3.2e-11  Score=83.39  Aligned_cols=86  Identities=30%  Similarity=0.457  Sum_probs=73.0

Q ss_pred             cccceeEEecCCCeeeeeC---ceEEEEEecC-CChhhhhhhHHHHHHHHhcC--CcEEEEEECCC--------------
Q 031271           57 CINEMVLNINDGGNVVFWV---LKVVIYYTAA-WCGPCKFIEPYVKDFAAMYT--DVQFIKIDVDW--------------  116 (162)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~---k~vvv~F~a~-wC~~C~~~~~~l~~~~~~~~--~v~f~~vd~d~--------------  116 (162)
                      ..|++.+.+.+|+.+..++   ++++|.||++ ||+.|....+.|.++.++|+  ++.++.|..|.              
T Consensus         4 ~~P~f~l~~~~g~~~~l~~l~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~   83 (124)
T PF00578_consen    4 KAPDFTLTDSDGKTVSLSDLKGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLP   83 (124)
T ss_dssp             BGGCEEEETTTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCS
T ss_pred             CCCCcEeECCCCCEEEHHHHCCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhccc
Confidence            4688999999999887765   8999999999 99999999999999999886  59999998863              


Q ss_pred             -------cHHHHHhcCCCC------CccEEEEE-cCCeEEE
Q 031271          117 -------LPEAAKAFDLID------VLPTFVLV-KRGKEID  143 (162)
Q Consensus       117 -------~~~l~~~~~i~~------~~Ptiv~~-~~Gk~i~  143 (162)
                             ...+.+.|++ .      .+|+++++ ++|+++.
T Consensus        84 ~~~~~D~~~~~~~~~~~-~~~~~~~~~p~~~lid~~g~I~~  123 (124)
T PF00578_consen   84 FPVLSDPDGELAKAFGI-EDEKDTLALPAVFLIDPDGKIRY  123 (124)
T ss_dssp             SEEEEETTSHHHHHTTC-EETTTSEESEEEEEEETTSBEEE
T ss_pred             cccccCcchHHHHHcCC-ccccCCceEeEEEEECCCCEEEe
Confidence                   3367888998 7      89987777 7888765

Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....

>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin

Probab=99.25  E-value=3.6e-11  Score=94.29  Aligned_cols=81  Identities=26%  Similarity=0.400  Sum_probs=68.2

Q ss_pred             EEEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC--------C
Q 031271           78 VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA--------K  149 (162)
Q Consensus        78 vvv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~--------~  149 (162)
                      |||+||.+.++.|..|...|..++++|+.+.|++|..+..+ +..+|.+ ..+||+++|++|..+..++|.        +
T Consensus       149 VVVHiY~~~~~~C~~mn~~L~~LA~kyp~vKFvkI~a~~~~-~~~~f~~-~~LPtllvYk~G~l~~~~V~l~~~~g~df~  226 (265)
T PF02114_consen  149 VVVHIYEPGFPRCEIMNSCLECLARKYPEVKFVKIRASKCP-ASENFPD-KNLPTLLVYKNGDLIGNFVGLTDLLGDDFF  226 (265)
T ss_dssp             EEEEEE-TTSCCHHHHHHHHHHHHHH-TTSEEEEEEECGCC-TTTTS-T-TC-SEEEEEETTEEEEEECTGGGCT-TT--
T ss_pred             EEEEEEeCCCchHHHHHHHHHHHHHhCCceEEEEEehhccC-cccCCcc-cCCCEEEEEECCEEEEeEEehHHhcCCCCC
Confidence            39999999999999999999999999999999999998775 7889999 999999999999999998765        2


Q ss_pred             HHHHHHHHHHH
Q 031271          150 KDELQMKTEKR  160 (162)
Q Consensus       150 ~~~l~~~l~~~  160 (162)
                      ...|+.+|.++
T Consensus       227 ~~dlE~~L~~~  237 (265)
T PF02114_consen  227 TEDLEAFLIEY  237 (265)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHHHc
Confidence            55788777654

Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.

>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A

Probab=99.24  E-value=1.7e-11  Score=79.66  Aligned_cols=74  Identities=27%  Similarity=0.543  Sum_probs=59.7

Q ss_pred             hhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhhhhhhHHH---HHHHHhc-
Q 031271           29 HQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYV---KDFAAMY-  104 (162)
Q Consensus        29 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~~~l---~~~~~~~-  104 (162)
                      .++++.++.|++++|++                                 +|+|+++||++|+.+...+   .++.+.+ 
T Consensus         4 ~d~~~al~~A~~~~kpv---------------------------------lv~f~a~wC~~C~~l~~~~~~~~~v~~~~~   50 (82)
T PF13899_consen    4 SDYEEALAEAKKEGKPV---------------------------------LVDFGADWCPPCKKLEREVFSDPEVQEALN   50 (82)
T ss_dssp             SSHHHHHHHHHHHTSEE---------------------------------EEEEETTTTHHHHHHHHHTTTSHHHHHHHH
T ss_pred             hhHHHHHHHHHHcCCCE---------------------------------EEEEECCCCHhHHHHHHHHcCCHHHHHHHH
Confidence            47889999999999999                                 9999999999999998877   5555523 


Q ss_pred             CCcEEEEEECCCcHHHHHhcCCCCCccEEEEEc
Q 031271          105 TDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVK  137 (162)
Q Consensus       105 ~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~  137 (162)
                      .++.++.+|.+...... .+.. .++|+++++.
T Consensus        51 ~~fv~v~vd~~~~~~~~-~~~~-~~~P~~~~ld   81 (82)
T PF13899_consen   51 KNFVLVKVDVDDEDPNA-QFDR-QGYPTFFFLD   81 (82)
T ss_dssp             HCSEEEEEETTTHHHHH-HHHH-CSSSEEEEEE
T ss_pred             CCEEEEEEEcCCCChhH-HhCC-ccCCEEEEeC
Confidence            56999999998776544 3333 5799999874

...

>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed

Probab=99.19  E-value=3.7e-10  Score=81.43  Aligned_cols=103  Identities=16%  Similarity=0.112  Sum_probs=76.8

Q ss_pred             ccccceeEEecCCCeeeeeC---ceEEEEEecC-CChhhhhhhHHHHHHHHhcC--CcEEEEEECCC-------------
Q 031271           56 YCINEMVLNINDGGNVVFWV---LKVVIYYTAA-WCGPCKFIEPYVKDFAAMYT--DVQFIKIDVDW-------------  116 (162)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~---k~vvv~F~a~-wC~~C~~~~~~l~~~~~~~~--~v~f~~vd~d~-------------  116 (162)
                      ...|++.+.+.+|+.+..++   |+++|+||+. ||+.|....+.|.++.+.+.  ++.++.|..|.             
T Consensus         8 ~~~p~f~l~~~~G~~~~l~~~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~~~~   87 (154)
T PRK09437          8 DIAPKFSLPDQDGEQVSLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRFAEKELL   87 (154)
T ss_pred             CcCCCcEeeCCCCCEEeHHHhCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCC
Confidence            34678999999999775543   8899999976 78889999999998888874  48888887752             


Q ss_pred             --------cHHHHHhcCCCCCc------------cEEEEE-cCCeEEEEEcCC-CHHHHHHHHHH
Q 031271          117 --------LPEAAKAFDLIDVL------------PTFVLV-KRGKEIDRVVGA-KKDELQMKTEK  159 (162)
Q Consensus       117 --------~~~l~~~~~i~~~~------------Ptiv~~-~~Gk~i~~~~g~-~~~~l~~~l~~  159 (162)
                              ...+++.||+ ...            |+.+++ ++|+++..+.|. ..+.+.+.++.
T Consensus        88 ~~~~l~D~~~~~~~~~gv-~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~~~~~~~~  151 (154)
T PRK09437         88 NFTLLSDEDHQVAEQFGV-WGEKKFMGKTYDGIHRISFLIDADGKIEHVFDKFKTSNHHDVVLDY  151 (154)
T ss_pred             CCeEEECCCchHHHHhCC-CcccccccccccCcceEEEEECCCCEEEEEEcCCCcchhHHHHHHH
Confidence                    2357778887 554            555555 799999999988 34444444443

>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family

Probab=99.18  E-value=2.4e-10  Score=71.57  Aligned_cols=69  Identities=30%  Similarity=0.537  Sum_probs=56.0

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHH----HHHhcCCCCCccEEEEEcCCeEEEEEcCCCHHHHH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPE----AAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQ  154 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~----l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~~~~~l~  154 (162)
                      +..|+++||++|+++.+.|++     .++.+..+|++.++.    +.+.+++ ..+|++++.  |+.   +.|.+++.|.
T Consensus         2 i~lf~~~~C~~C~~~~~~l~~-----~~i~~~~vdi~~~~~~~~~~~~~~~~-~~vP~~~~~--~~~---~~g~~~~~i~   70 (74)
T TIGR02196         2 VKVYTTPWCPPCKKAKEYLTS-----KGIAFEEIDVEKDSAAREEVLKVLGQ-RGVPVIVIG--HKI---IVGFDPEKLD   70 (74)
T ss_pred             EEEEcCCCChhHHHHHHHHHH-----CCCeEEEEeccCCHHHHHHHHHHhCC-CcccEEEEC--CEE---EeeCCHHHHH
Confidence            567999999999999988876     368899999987654    4567999 999999874  654   6688888888


Q ss_pred             HHHH
Q 031271          155 MKTE  158 (162)
Q Consensus       155 ~~l~  158 (162)
                      ++|+
T Consensus        71 ~~i~   74 (74)
T TIGR02196        71 QLLE   74 (74)
T ss_pred             HHhC
Confidence            8763

This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.

>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=99.11  E-value=5.3e-10  Score=74.52  Aligned_cols=82  Identities=34%  Similarity=0.667  Sum_probs=67.4

Q ss_pred             CceEEEEEecCCChhhhhhhHHHHHHHHhcCC-cEEEEEECC-CcHHHHHhcC--CCCCccEEEEEcCCeEEEEEcC--C
Q 031271           75 VLKVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVD-WLPEAAKAFD--LIDVLPTFVLVKRGKEIDRVVG--A  148 (162)
Q Consensus        75 ~k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~-v~f~~vd~d-~~~~l~~~~~--i~~~~Ptiv~~~~Gk~i~~~~g--~  148 (162)
                      ++++++.||++||++|+.+.|.+.++.++++. +.++.++.. ....+...|+  + ..+|+++++.+|..+....+  .
T Consensus        32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~  110 (127)
T COG0526          32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGVAV-RSIPTLLLFKDGKEVDRLVGGKV  110 (127)
T ss_pred             CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChHHHHHHhhhh-ccCCeEEEEeCcchhhhhhhccc
Confidence            45669999999999999999999999999985 999999997 8889999999  8 99999998888876665555  3


Q ss_pred             -CHHHHHHHH
Q 031271          149 -KKDELQMKT  157 (162)
Q Consensus       149 -~~~~l~~~l  157 (162)
                       ....+....
T Consensus       111 ~~~~~~~~~~  120 (127)
T COG0526         111 LPKEALIDAL  120 (127)
T ss_pred             CCHHHHHHHh
Confidence             444444433

>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.11  E-value=2.7e-10  Score=93.81  Aligned_cols=101  Identities=25%  Similarity=0.355  Sum_probs=82.7

Q ss_pred             ceeEEecCCCe-eeeeCceEEEEEecCCChhhhhhhHHHHHHHHhcC---CcEEEEEECCCcHHHHHhcCCCCCccEEEE
Q 031271           60 EMVLNINDGGN-VVFWVLKVVIYYTAAWCGPCKFIEPYVKDFAAMYT---DVQFIKIDVDWLPEAAKAFDLIDVLPTFVL  135 (162)
Q Consensus        60 ~~~~~~~~~~~-~~~~~k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~---~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~  135 (162)
                      .+.+...+... +...+.++++.||+|||++|+.+.|.++++++.+.   .+.+..+|++....+++++++ ..+||+++
T Consensus       146 v~~l~~~~~~~~~~~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v-~~~Pt~~~  224 (383)
T KOG0191|consen  146 VFELTKDNFDETVKDSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVHKSLASRLEV-RGYPTLKL  224 (383)
T ss_pred             eEEccccchhhhhhccCcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchHHHHhhhhcc-cCCceEEE
Confidence            34444444443 44566778999999999999999999999999874   399999999999999999999 99999999


Q ss_pred             EcCCeE-EEEEcCC-CHHHHHHHHHHHh
Q 031271          136 VKRGKE-IDRVVGA-KKDELQMKTEKRR  161 (162)
Q Consensus       136 ~~~Gk~-i~~~~g~-~~~~l~~~l~~~~  161 (162)
                      |++|.. .....+. +.+.+..++.+..
T Consensus       225 f~~~~~~~~~~~~~R~~~~i~~~v~~~~  252 (383)
T KOG0191|consen  225 FPPGEEDIYYYSGLRDSDSIVSFVEKKE  252 (383)
T ss_pred             ecCCCcccccccccccHHHHHHHHHhhc
Confidence            987777 5556665 8999999988653

>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE

Probab=99.10  E-value=1.3e-09  Score=77.76  Aligned_cols=93  Identities=18%  Similarity=0.212  Sum_probs=71.4

Q ss_pred             ccccceeEEecCCCeeeeeC----ceEEEEEe-cCCChhhhhhhHHHHHHHHhcC--CcEEEEEECC-------------
Q 031271           56 YCINEMVLNINDGGNVVFWV----LKVVIYYT-AAWCGPCKFIEPYVKDFAAMYT--DVQFIKIDVD-------------  115 (162)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~----k~vvv~F~-a~wC~~C~~~~~~l~~~~~~~~--~v~f~~vd~d-------------  115 (162)
                      ...|++.+.+.+|+.+..++    ++++|.|| ++||+.|....|.+.++.+++.  ++.++.|..+             
T Consensus         5 ~~~p~~~l~~~~g~~v~l~~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~   84 (149)
T cd03018           5 DKAPDFELPDQNGQEVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWAEENG   84 (149)
T ss_pred             CcCCCcEecCCCCCEEeHHHHcCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcC
Confidence            34678888888999775543    77888887 8999999999999999998885  4888887664             


Q ss_pred             --------Cc--HHHHHhcCCCCC----cc--EEEEE-cCCeEEEEEcCCC
Q 031271          116 --------WL--PEAAKAFDLIDV----LP--TFVLV-KRGKEIDRVVGAK  149 (162)
Q Consensus       116 --------~~--~~l~~~~~i~~~----~P--tiv~~-~~Gk~i~~~~g~~  149 (162)
                              ..  ..+++.|++ ..    +|  +++++ ++|+++.++.|.+
T Consensus        85 ~~~~~~~D~~~~~~~~~~~g~-~~~~~~~~~~~~~lid~~G~v~~~~~~~~  134 (149)
T cd03018          85 LTFPLLSDFWPHGEVAKAYGV-FDEDLGVAERAVFVIDRDGIIRYAWVSDD  134 (149)
T ss_pred             CCceEecCCCchhHHHHHhCC-ccccCCCccceEEEECCCCEEEEEEecCC
Confidence                    22  467788888 63    33  65666 7999999888763

AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.

>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides

Probab=99.10  E-value=1.7e-09  Score=79.67  Aligned_cols=102  Identities=10%  Similarity=0.065  Sum_probs=74.2

Q ss_pred             ccceeEEecCC----Ceeeee---CceEEEEEe-cCCChhhhhhhHHHHHHHHhcC--CcEEEEEECCCc----------
Q 031271           58 INEMVLNINDG----GNVVFW---VLKVVIYYT-AAWCGPCKFIEPYVKDFAAMYT--DVQFIKIDVDWL----------  117 (162)
Q Consensus        58 ~~~~~~~~~~~----~~~~~~---~k~vvv~F~-a~wC~~C~~~~~~l~~~~~~~~--~v~f~~vd~d~~----------  117 (162)
                      .|++.+.+.+|    +.+..+   .|++||+|| ++||+.|....+.|.++.++|.  ++.++.|..|..          
T Consensus         5 aP~f~~~~~~g~~~~~~~~l~~~~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~   84 (173)
T cd03015           5 APDFKATAVVPNGEFKEISLSDYKGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAWRNTP   84 (173)
T ss_pred             CCCCEeecccCCCCceEEehHHhCCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHhh
Confidence            46777777666    444433   388899999 8999999999999999998885  477777766532          


Q ss_pred             ------------------HHHHHhcCCCC------CccEEEEE-cCCeEEEEEcCC-----CHHHHHHHHHHH
Q 031271          118 ------------------PEAAKAFDLID------VLPTFVLV-KRGKEIDRVVGA-----KKDELQMKTEKR  160 (162)
Q Consensus       118 ------------------~~l~~~~~i~~------~~Ptiv~~-~~Gk~i~~~~g~-----~~~~l~~~l~~~  160 (162)
                                        ..+++.|++ .      .+|+.+++ ++|++...+.+.     +.+++.+.|++.
T Consensus        85 ~~~~~~~~~~f~~l~D~~~~~~~~~gv-~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~~  156 (173)
T cd03015          85 RKEGGLGKINFPLLADPKKKISRDYGV-LDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDAL  156 (173)
T ss_pred             hhhCCccCcceeEEECCchhHHHHhCC-ccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence                              245567776 5      56777777 799998888543     356677777643

The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric

>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs

Probab=99.09  E-value=1.3e-09  Score=77.59  Aligned_cols=58  Identities=14%  Similarity=0.200  Sum_probs=45.6

Q ss_pred             ccceeEEecCCCeeeee----CceEEEEE-ecCCChhhhhhhHHHHHHHHhcC--CcEEEEEECC
Q 031271           58 INEMVLNINDGGNVVFW----VLKVVIYY-TAAWCGPCKFIEPYVKDFAAMYT--DVQFIKIDVD  115 (162)
Q Consensus        58 ~~~~~~~~~~~~~~~~~----~k~vvv~F-~a~wC~~C~~~~~~l~~~~~~~~--~v~f~~vd~d  115 (162)
                      .|++.+.+.+|+.+..+    .++++|.| |++||++|+...|.|.++.+++.  ++.++.|..+
T Consensus         2 ~p~f~l~~~~g~~~~l~~~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~   66 (149)
T cd02970           2 APDFELPDAGGETVTLSALLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPE   66 (149)
T ss_pred             CCCccccCCCCCEEchHHHhcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCC
Confidence            46788888888877542    35555555 69999999999999999999884  5888888775

Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.

>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=99.07  E-value=5.7e-10  Score=82.49  Aligned_cols=69  Identities=29%  Similarity=0.450  Sum_probs=67.5

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA  148 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~  148 (162)
                      |+.||-+.-..|+-|...|+.+++.+.+..|++|++...|-++.+++| ..+|++++|+||+.+++++|+
T Consensus        88 VcHFY~~~f~RCKimDkhLe~LAk~h~eTrFikvnae~~PFlv~kL~I-kVLP~v~l~k~g~~~D~iVGF  156 (211)
T KOG1672|consen   88 VCHFYRPEFFRCKIMDKHLEILAKRHVETRFIKVNAEKAPFLVTKLNI-KVLPTVALFKNGKTVDYVVGF  156 (211)
T ss_pred             EEEEEcCCCcceehHHHHHHHHHHhcccceEEEEecccCceeeeeeee-eEeeeEEEEEcCEEEEEEeeH
Confidence            799999999999999999999999999999999999999999999999 999999999999999999887

>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like

Probab=99.03  E-value=1.4e-09  Score=75.50  Aligned_cols=100  Identities=17%  Similarity=0.319  Sum_probs=63.8

Q ss_pred             eechhhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecC-------CChhhhhhhHHH
Q 031271           25 LQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAA-------WCGPCKFIEPYV   97 (162)
Q Consensus        25 i~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~-------wC~~C~~~~~~l   97 (162)
                      +..-+++.+.++.....++++                                 +|+|+++       |||.|....|.+
T Consensus         2 v~gy~~~~~~~~~~~~~~~~~---------------------------------fl~F~gs~d~~g~sWCPDC~~aep~v   48 (119)
T PF06110_consen    2 VRGYDEFEKLVEEYENSGKPL---------------------------------FLLFTGSKDETGQSWCPDCVAAEPVV   48 (119)
T ss_dssp             EECHHHHHHHHHC--TTTSEE---------------------------------EEEEE--B-TTS-BSSHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHhhcCCCeE---------------------------------EEEEEccCCCCCCcccHHHHHHHHHH
Confidence            345678888888766666777                                 8888865       999999999999


Q ss_pred             HHHHHhcCC-cEEEEEECCC-------cHHHHH--hcCCCCCccEEEEEcCCeEEEEEcCCCHHHHHHHHH
Q 031271           98 KDFAAMYTD-VQFIKIDVDW-------LPEAAK--AFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQMKTE  158 (162)
Q Consensus        98 ~~~~~~~~~-v~f~~vd~d~-------~~~l~~--~~~i~~~~Ptiv~~~~Gk~i~~~~g~~~~~l~~~l~  158 (162)
                      ++.....++ ..|+.|.+..       +..+..  ++++ .++||++-+.+++.+....-.+.+.|+.+++
T Consensus        49 ~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l-~~IPTLi~~~~~~rL~e~e~~~~~lv~~~~e  118 (119)
T PF06110_consen   49 EKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDLKL-KGIPTLIRWETGERLVEEECLNEDLVEMFFE  118 (119)
T ss_dssp             HHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC----SSSEEEECTSS-EEEHHHHH-HHHHHHHHH
T ss_pred             HHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcceeee-eecceEEEECCCCccchhhhccHHHHHHHhc
Confidence            998887764 8888888743       234555  6999 9999999998774432111115666666654

; PDB: 1V9W_A 1WOU_A.

>TIGR03137 AhpC peroxiredoxin

Probab=99.03  E-value=3.6e-09  Score=79.04  Aligned_cols=102  Identities=15%  Similarity=0.072  Sum_probs=74.5

Q ss_pred             cccceeEEe-cCCC--eeee---eCceEEEEEe-cCCChhhhhhhHHHHHHHHhcC--CcEEEEEECCC-----------
Q 031271           57 CINEMVLNI-NDGG--NVVF---WVLKVVIYYT-AAWCGPCKFIEPYVKDFAAMYT--DVQFIKIDVDW-----------  116 (162)
Q Consensus        57 ~~~~~~~~~-~~~~--~~~~---~~k~vvv~F~-a~wC~~C~~~~~~l~~~~~~~~--~v~f~~vd~d~-----------  116 (162)
                      ..|+|.+.+ .+|+  .+..   ..|+|||+|| ++||+.|....+.|.++.+++.  ++.++.|..|.           
T Consensus         7 ~aP~f~l~~~~~g~~~~~sl~d~~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~   86 (187)
T TIGR03137         7 EIKPFKATAYHNGEFVEVTDEDVKGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAWHDTS   86 (187)
T ss_pred             cCCCcEeeeccCCceeEecHHHHCCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhh
Confidence            468888887 5666  3432   3488999999 9999999999999999888874  57777777653           


Q ss_pred             --------------cHHHHHhcCCCC------CccEEEEE-cCCeEEEEEcCC-----CHHHHHHHHHH
Q 031271          117 --------------LPEAAKAFDLID------VLPTFVLV-KRGKEIDRVVGA-----KKDELQMKTEK  159 (162)
Q Consensus       117 --------------~~~l~~~~~i~~------~~Ptiv~~-~~Gk~i~~~~g~-----~~~~l~~~l~~  159 (162)
                                    ...+++.||+ .      ..|+.+++ ++|++.....+.     +.+++.+.|++
T Consensus        87 ~~~~~l~fpllsD~~~~~a~~~gv-~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~~  154 (187)
T TIGR03137        87 EAIGKITYPMLGDPTGVLTRNFGV-LIEEAGLADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIKA  154 (187)
T ss_pred             hhccCcceeEEECCccHHHHHhCC-cccCCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHH
Confidence                          2356778887 5      35866666 799988876432     56777777654

This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.

>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified

Probab=99.03  E-value=2.4e-09  Score=75.55  Aligned_cols=91  Identities=21%  Similarity=0.247  Sum_probs=71.7

Q ss_pred             ccceeEEecCCCeeeeeC---ceEEEEEe-cCCChhhhhhhHHHHHHHHhc--CCcEEEEEECCC---------------
Q 031271           58 INEMVLNINDGGNVVFWV---LKVVIYYT-AAWCGPCKFIEPYVKDFAAMY--TDVQFIKIDVDW---------------  116 (162)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~---k~vvv~F~-a~wC~~C~~~~~~l~~~~~~~--~~v~f~~vd~d~---------------  116 (162)
                      .|++.+.+.+|+.+..++   ++++|+|| +.||+.|....+.|.++.+++  .++.|+.|..+.               
T Consensus         2 ~p~f~l~~~~g~~~~l~~~~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~~~~~   81 (140)
T cd02971           2 APDFTLPATDGGEVSLSDFKGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKEGGLN   81 (140)
T ss_pred             CCCceeccCCCcEEehHHhCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcccCCC
Confidence            477888888888876654   88999999 789999999999999998887  358888887752               


Q ss_pred             -------cHHHHHhcCCCCCcc---------EEEEE-cCCeEEEEEcCCC
Q 031271          117 -------LPEAAKAFDLIDVLP---------TFVLV-KRGKEIDRVVGAK  149 (162)
Q Consensus       117 -------~~~l~~~~~i~~~~P---------tiv~~-~~Gk~i~~~~g~~  149 (162)
                             ...+++.||+ ...|         +++++ ++|+++.++.|..
T Consensus        82 ~~~l~D~~~~~~~~~g~-~~~~~~~~~~~~p~~~lid~~g~i~~~~~~~~  130 (140)
T cd02971          82 FPLLSDPDGEFAKAYGV-LIEKSAGGGLAARATFIIDPDGKIRYVEVEPL  130 (140)
T ss_pred             ceEEECCChHHHHHcCC-ccccccccCceeEEEEEECCCCcEEEEEecCC
Confidence                   2357778887 6665         55555 6899999988874

PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a

>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.03  E-value=4.6e-09  Score=75.34  Aligned_cols=79  Identities=19%  Similarity=0.354  Sum_probs=65.9

Q ss_pred             EEEEecCCChhhhhhhHHH---HHHHHhcCC-cEEEEEECC----------------CcHHHHHhcCCCCCccEEEEE-c
Q 031271           79 VIYYTAAWCGPCKFIEPYV---KDFAAMYTD-VQFIKIDVD----------------WLPEAAKAFDLIDVLPTFVLV-K  137 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l---~~~~~~~~~-v~f~~vd~d----------------~~~~l~~~~~i~~~~Ptiv~~-~  137 (162)
                      ++.|.++.|++|.++...+   +++++-+.. +.++.+++.                ...+|++.|++ +++||+++| +
T Consensus        46 llmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~v-rstPtfvFfdk  124 (182)
T COG2143          46 LLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAV-RSTPTFVFFDK  124 (182)
T ss_pred             EEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhcc-ccCceEEEEcC
Confidence            9999999999999998877   555555543 888888774                23489999999 999999999 6


Q ss_pred             CCeEEEEEcCC-CHHHHHHHHH
Q 031271          138 RGKEIDRVVGA-KKDELQMKTE  158 (162)
Q Consensus       138 ~Gk~i~~~~g~-~~~~l~~~l~  158 (162)
                      +|+.+..+.|+ .++++...++
T Consensus       125 ~Gk~Il~lPGY~ppe~Fl~vlk  146 (182)
T COG2143         125 TGKTILELPGYMPPEQFLAVLK  146 (182)
T ss_pred             CCCEEEecCCCCCHHHHHHHHH
Confidence            89999999999 8998877664

>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A

Probab=99.02  E-value=1.3e-09  Score=76.89  Aligned_cols=80  Identities=25%  Similarity=0.435  Sum_probs=54.5

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHHHHHhc---CCCCCccEEEEE-cCCeEEEEEcCCCHHHHH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAF---DLIDVLPTFVLV-KRGKEIDRVVGAKKDELQ  154 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~l~~~~---~i~~~~Ptiv~~-~~Gk~i~~~~g~~~~~l~  154 (162)
                      ++.|..+|||.|++..|.+.++++..|++.+-.+..|.++++..+|   |. ..+|+++++ .+|+.+.++. ..|..+.
T Consensus        45 ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~~el~~~~lt~g~-~~IP~~I~~d~~~~~lg~wg-erP~~~~  122 (129)
T PF14595_consen   45 ILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDENKELMDQYLTNGG-RSIPTFIFLDKDGKELGRWG-ERPKEVQ  122 (129)
T ss_dssp             EEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHHTTTTTT-SS---SSEEEEE-TT--EEEEEE-SS-HHHH
T ss_pred             EEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecCChhHHHHHHhCCC-eecCEEEEEcCCCCEeEEEc-CCCHHHh
Confidence            7889999999999999999999999999888888888888877665   56 899999999 5788888774 4466666


Q ss_pred             HHHHHH
Q 031271          155 MKTEKR  160 (162)
Q Consensus       155 ~~l~~~  160 (162)
                      +++.++
T Consensus       123 ~~~~~~  128 (129)
T PF14595_consen  123 ELVDEY  128 (129)
T ss_dssp             ------
T ss_pred             hccccC
Confidence            666543

>TIGR02200 GlrX_actino Glutaredoxin-like protein

Probab=99.02  E-value=2.7e-09  Score=67.69  Aligned_cols=70  Identities=17%  Similarity=0.341  Sum_probs=53.0

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHHHHHh-----cCCCCCccEEEEEcCCeEEEEEcCCCHHHH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKA-----FDLIDVLPTFVLVKRGKEIDRVVGAKKDEL  153 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~l~~~-----~~i~~~~Ptiv~~~~Gk~i~~~~g~~~~~l  153 (162)
                      +..||++||++|+++.+.|.+.     ++.|-.+|+++.+.....     +++ ..+|++ ++.+|+.+.   ..+..++
T Consensus         2 v~ly~~~~C~~C~~~~~~L~~~-----~~~~~~idi~~~~~~~~~~~~~~~~~-~~vP~i-~~~~g~~l~---~~~~~~~   71 (77)
T TIGR02200         2 ITVYGTTWCGYCAQLMRTLDKL-----GAAYEWVDIEEDEGAADRVVSVNNGN-MTVPTV-KFADGSFLT---NPSAAQV   71 (77)
T ss_pred             EEEEECCCChhHHHHHHHHHHc-----CCceEEEeCcCCHhHHHHHHHHhCCC-ceeCEE-EECCCeEec---CCCHHHH
Confidence            5779999999999999998775     455667888877766555     388 999997 467886543   5566777


Q ss_pred             HHHHH
Q 031271          154 QMKTE  158 (162)
Q Consensus       154 ~~~l~  158 (162)
                      .+.|+
T Consensus        72 ~~~l~   76 (77)
T TIGR02200        72 KAKLQ   76 (77)
T ss_pred             HHHhh
Confidence            76664

This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.

>PRK10606 btuE putative glutathione peroxidase; Provisional

Probab=99.01  E-value=2.1e-09  Score=80.16  Aligned_cols=58  Identities=14%  Similarity=0.158  Sum_probs=48.2

Q ss_pred             cccceeEEecCCCeeeeeC---ceEEEEEecCCChhhhhhhHHHHHHHHhcC--CcEEEEEECC
Q 031271           57 CINEMVLNINDGGNVVFWV---LKVVIYYTAAWCGPCKFIEPYVKDFAAMYT--DVQFIKIDVD  115 (162)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~---k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~--~v~f~~vd~d  115 (162)
                      +..++.+.+.+|+.+..++   |+|||.|||+||++|.. .+.|+++.++|.  ++.++.+.++
T Consensus         4 ~~~~f~~~~~~G~~v~Ls~~~GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~gl~Vlg~p~n   66 (183)
T PRK10606          4 SILTTVVTTIDGEVTTLEKYAGNVLLIVNVASKCGLTPQ-YEQLENIQKAWADQGFVVLGFPCN   66 (183)
T ss_pred             CccCcEeECCCCCEEeHHHhCCCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhCCeEEEEeecc
Confidence            4567888899999886655   89999999999999974 889999999986  4888888763

>KOG3414 consensus Component of the U4/U6

Probab=98.99  E-value=8.7e-09  Score=71.22  Aligned_cols=102  Identities=22%  Similarity=0.330  Sum_probs=84.1

Q ss_pred             eeEeechhhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhhhhhhHHHHHHH
Q 031271           22 VMELQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYVKDFA  101 (162)
Q Consensus        22 v~~i~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~~~l~~~~  101 (162)
                      +..+.|.++.++.+..  +..+++                                 +|.|...|-+.|.+|...|.+++
T Consensus         5 Lp~L~s~~~VdqaI~~--t~~rlv---------------------------------ViRFGr~~Dp~C~~mD~~L~~i~   49 (142)
T KOG3414|consen    5 LPTLHSGWEVDQAILS--TEERLV---------------------------------VIRFGRDWDPTCMKMDELLSSIA   49 (142)
T ss_pred             ccccccHHHHHHHHhc--ccceEE---------------------------------EEEecCCCCchHhhHHHHHHHHH
Confidence            4567788888888874  567888                                 99999999999999999999999


Q ss_pred             HhcCC-cEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEE---------EEcCC--CHHHHHHHHHH
Q 031271          102 AMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEID---------RVVGA--KKDELQMKTEK  159 (162)
Q Consensus       102 ~~~~~-v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~---------~~~g~--~~~~l~~~l~~  159 (162)
                      +...+ +.++.||+|+-+++.+.|++ ...|++++|-+++.+.         ++.+.  +..++++.++-
T Consensus        50 ~~vsnfa~IylvdideV~~~~~~~~l-~~p~tvmfFfn~kHmkiD~gtgdn~Kin~~~~~kq~~Idiie~  118 (142)
T KOG3414|consen   50 EDVSNFAVIYLVDIDEVPDFVKMYEL-YDPPTVMFFFNNKHMKIDLGTGDNNKINFAFEDKQEFIDIIET  118 (142)
T ss_pred             HHHhhceEEEEEecchhhhhhhhhcc-cCCceEEEEEcCceEEEeeCCCCCceEEEEeccHHHHHHHHHH
Confidence            99988 88889999999999999999 9999999887776554         23333  45666666654

U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold

Probab=98.98  E-value=2.9e-09  Score=75.31  Aligned_cols=58  Identities=22%  Similarity=0.297  Sum_probs=48.6

Q ss_pred             ccceeEEecCCCeeeee---CceEEEEEecCCChh-hhhhhHHHHHHHHhcCC-----cEEEEEECC
Q 031271           58 INEMVLNINDGGNVVFW---VLKVVIYYTAAWCGP-CKFIEPYVKDFAAMYTD-----VQFIKIDVD  115 (162)
Q Consensus        58 ~~~~~~~~~~~~~~~~~---~k~vvv~F~a~wC~~-C~~~~~~l~~~~~~~~~-----v~f~~vd~d  115 (162)
                      .|++.+.+.+|+.+..+   .++++|+||++||++ |....+.+.++.+++.+     +.++.|..|
T Consensus         2 ~p~f~l~~~~g~~~~l~~~~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d   68 (142)
T cd02968           2 GPDFTLTDQDGRPVTLSDLKGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVD   68 (142)
T ss_pred             CCceEEEcCCCCEEchHHhCCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEEC
Confidence            47788999999877553   488999999999998 99999999999888743     788888764

Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti

>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins

Probab=98.98  E-value=3.6e-09  Score=77.08  Aligned_cols=84  Identities=19%  Similarity=0.382  Sum_probs=59.0

Q ss_pred             hhH-HHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhhhhhhH-HH--HHHHHhc
Q 031271           29 HQW-RSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEP-YV--KDFAAMY  104 (162)
Q Consensus        29 ~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~~-~l--~~~~~~~  104 (162)
                      ..| ++.++.|++++|++                                 +|.++.+||..|+.|.. .|  .++++.+
T Consensus        23 ~~w~~ea~~~Ak~e~KpI---------------------------------fl~ig~~~C~wChvM~~esf~d~eVa~~l   69 (163)
T PF03190_consen   23 QPWGEEALEKAKKENKPI---------------------------------FLSIGYSWCHWCHVMERESFSDPEVAEYL   69 (163)
T ss_dssp             B-SSHHHHHHHHHHT--E---------------------------------EEEEE-TT-HHHHHHHHHTTT-HHHHHHH
T ss_pred             ccCCHHHHHHHHhcCCcE---------------------------------EEEEEecCCcchhhhcccCcCCHHHHHHH
Confidence            445 47888888999999                                 99999999999999875 34  5555555


Q ss_pred             C-CcEEEEEECCCcHHHHHhc--------CCCCCccEEEEE-cCCeEEEEEc
Q 031271          105 T-DVQFIKIDVDWLPEAAKAF--------DLIDVLPTFVLV-KRGKEIDRVV  146 (162)
Q Consensus       105 ~-~v~f~~vd~d~~~~l~~~~--------~i~~~~Ptiv~~-~~Gk~i~~~~  146 (162)
                      . ++.-++||.++.|++...|        |. .++|+.+|. ++|+++....
T Consensus        70 N~~FI~VkvDree~Pdid~~y~~~~~~~~~~-gGwPl~vfltPdg~p~~~~t  120 (163)
T PF03190_consen   70 NRNFIPVKVDREERPDIDKIYMNAVQAMSGS-GGWPLTVFLTPDGKPFFGGT  120 (163)
T ss_dssp             HHH-EEEEEETTT-HHHHHHHHHHHHHHHS----SSEEEEE-TTS-EEEEES
T ss_pred             hCCEEEEEeccccCccHHHHHHHHHHHhcCC-CCCCceEEECCCCCeeeeee
Confidence            3 3888899999999999888        78 999988877 8999987643

; PDB: 3IRA_A.

>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.95  E-value=7.5e-10  Score=83.34  Aligned_cols=102  Identities=20%  Similarity=0.403  Sum_probs=84.1

Q ss_pred             CCCcccCCCceeEeechhhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhhh
Q 031271           12 HGFIHAKTPLVMELQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCK   91 (162)
Q Consensus        12 ~~~~~~~~~~v~~i~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~   91 (162)
                      +.+...+...++-.+..+.+++.+..  +..+.+                                 +|.|++.|.+.|+
T Consensus       116 ~eP~y~gpe~ikyf~~~q~~deel~r--nk~t~W---------------------------------lIeFfa~ws~~Cv  160 (265)
T KOG0914|consen  116 PEPAYSGPETIKYFTNMQLEDEELDR--NKRTYW---------------------------------LIEFFACWSPKCV  160 (265)
T ss_pred             CccccCCchheeeecchhhHHHHhcc--CCceEE---------------------------------EEEEEeecChhhc
Confidence            34455567777777777777777764  335556                                 9999999999999


Q ss_pred             hhhHHHHHHHHhcCC--cEEEEEECCCcHHHHHhcCC-----CCCccEEEEEcCCeEEEEEcCC
Q 031271           92 FIEPYVKDFAAMYTD--VQFIKIDVDWLPEAAKAFDL-----IDVLPTFVLVKRGKEIDRVVGA  148 (162)
Q Consensus        92 ~~~~~l~~~~~~~~~--v~f~~vd~d~~~~l~~~~~i-----~~~~Ptiv~~~~Gk~i~~~~g~  148 (162)
                      ...|.+.++..+|..  ..|.+||+..-++.+.+|+|     .+.+||+++|.+|+++.|....
T Consensus       161 ~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~kfris~s~~srQLPT~ilFq~gkE~~RrP~v  224 (265)
T KOG0914|consen  161 RFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAAKFRISLSPGSRQLPTYILFQKGKEVSRRPDV  224 (265)
T ss_pred             ccccccHHHHHHhCCCCCcccceeeccCcChHHheeeccCcccccCCeEEEEccchhhhcCccc
Confidence            999999999999964  99999999999999999987     3589999999999998876433

>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=98.89  E-value=6.8e-10  Score=93.50  Aligned_cols=60  Identities=22%  Similarity=0.476  Sum_probs=53.0

Q ss_pred             eEEEEEecCCChhhhhhhHHHHHHHHhcCC----cEEEEEECC--CcHHHHHhcCCCCCccEEEEEc
Q 031271           77 KVVIYYTAAWCGPCKFIEPYVKDFAAMYTD----VQFIKIDVD--WLPEAAKAFDLIDVLPTFVLVK  137 (162)
Q Consensus        77 ~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~----v~f~~vd~d--~~~~l~~~~~i~~~~Ptiv~~~  137 (162)
                      -.+|.||++||++|+++.|.++++++....    +.+..||+-  .|..+|+.|+| ..+|++.+|+
T Consensus        59 ~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V-~~~Ptlryf~  124 (606)
T KOG1731|consen   59 AKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSV-SGYPTLRYFP  124 (606)
T ss_pred             hHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCC-CCCceeeecC
Confidence            338999999999999999999999997754    788888874  67899999999 9999999994

>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold

Probab=98.87  E-value=1.6e-08  Score=60.07  Aligned_cols=60  Identities=28%  Similarity=0.630  Sum_probs=51.0

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHHHHH---hcCCCCCccEEEEEcCC
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAK---AFDLIDVLPTFVLVKRG  139 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~l~~---~~~i~~~~Ptiv~~~~G  139 (162)
                      ++.||++||+.|..+.+.+.++....+++.+..++++.......   .+++ ..+|+++++.+|
T Consensus         1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~P~~~~~~~~   63 (69)
T cd01659           1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKELKRYGV-GGVPTLVVFGPG   63 (69)
T ss_pred             CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhhHHHhCCC-ccccEEEEEeCC
Confidence            47899999999999999999984444569999999998876654   8899 999999999776

Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.

>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals

Probab=98.86  E-value=4.2e-08  Score=67.95  Aligned_cols=96  Identities=17%  Similarity=0.242  Sum_probs=75.1

Q ss_pred             hHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecC----CChhhhhh--hHHHHHHHHh
Q 031271           30 QWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAA----WCGPCKFI--EPYVKDFAAM  103 (162)
Q Consensus        30 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~----wC~~C~~~--~~~l~~~~~~  103 (162)
                      .|++.+..++++.|++                                 +|++|++    ||..|+..  .|.+.++.. 
T Consensus         5 s~~eAl~~ak~e~K~l---------------------------------lVylhs~~~~~~~~fc~~~l~~~~v~~~ln-   50 (116)
T cd02991           5 TYSQALNDAKQELRFL---------------------------------LVYLHGDDHQDTDEFCRNTLCAPEVIEYIN-   50 (116)
T ss_pred             cHHHHHHHHHhhCCEE---------------------------------EEEEeCCCCccHHHHHHHHcCCHHHHHHHH-
Confidence            5788899999999999                                 9999999    89999755  233333333 


Q ss_pred             cCCcEEEEEECCCc--HHHHHhcCCCCCccEEEEE--cC--CeEEEEEcCC-CHHHHHHHHHHHh
Q 031271          104 YTDVQFIKIDVDWL--PEAAKAFDLIDVLPTFVLV--KR--GKEIDRVVGA-KKDELQMKTEKRR  161 (162)
Q Consensus       104 ~~~v~f~~vd~d~~--~~l~~~~~i~~~~Ptiv~~--~~--Gk~i~~~~g~-~~~~l~~~l~~~~  161 (162)
                       .++.+...|++..  ..++..+++ ..+|+++++  ++  .+++.++.|. ++++|...|+...
T Consensus        51 -~~fv~w~~dv~~~eg~~la~~l~~-~~~P~~~~l~~~~~~~~vv~~i~G~~~~~~ll~~L~~~~  113 (116)
T cd02991          51 -TRMLFWACSVAKPEGYRVSQALRE-RTYPFLAMIMLKDNRMTIVGRLEGLIQPEDLINRLTFIM  113 (116)
T ss_pred             -cCEEEEEEecCChHHHHHHHHhCC-CCCCEEEEEEecCCceEEEEEEeCCCCHHHHHHHHHHHH
Confidence             2488888888743  468899999 999998887  23  3568899999 9999999888754

ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.

>PRK13190 putative peroxiredoxin; Provisional

Probab=98.86  E-value=3.7e-08  Score=74.49  Aligned_cols=102  Identities=15%  Similarity=0.117  Sum_probs=72.7

Q ss_pred             cccceeEEecCCCeeeee---CceEEE-EEecCCChhhhhhhHHHHHHHHhcC--CcEEEEEECCC--------------
Q 031271           57 CINEMVLNINDGGNVVFW---VLKVVI-YYTAAWCGPCKFIEPYVKDFAAMYT--DVQFIKIDVDW--------------  116 (162)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~---~k~vvv-~F~a~wC~~C~~~~~~l~~~~~~~~--~v~f~~vd~d~--------------  116 (162)
                      ..|+|.+.+.+| .+..+   +|.++| +||++||+.|....+.|.++.+++.  ++.++.|.+|.              
T Consensus         7 ~aP~F~~~~~~g-~v~l~d~~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~   85 (202)
T PRK13190          7 KAPDFTVNTTKG-PIDLSKYKGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEER   85 (202)
T ss_pred             CCCCcEEecCCC-cEeHHHhCCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHh
Confidence            356777777666 34333   355555 6899999999999999999888885  47777776652              


Q ss_pred             -------------cHHHHHhcCCCC------CccEEEEE-cCCeEEEEE-----cCCCHHHHHHHHHHH
Q 031271          117 -------------LPEAAKAFDLID------VLPTFVLV-KRGKEIDRV-----VGAKKDELQMKTEKR  160 (162)
Q Consensus       117 -------------~~~l~~~~~i~~------~~Ptiv~~-~~Gk~i~~~-----~g~~~~~l~~~l~~~  160 (162)
                                   ...+++.||+ .      .+|+.+++ ++|++....     .|.+.+++...|+.+
T Consensus        86 ~g~~~~fPll~D~~~~ia~~ygv-~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l  153 (202)
T PRK13190         86 FGIKIPFPVIADIDKELAREYNL-IDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKAL  153 (202)
T ss_pred             cCCCceEEEEECCChHHHHHcCC-ccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence                         2356677776 4      47987777 688877655     244788888888754

>PF13728 TraF: F plasmid transfer operon protein

Probab=98.85  E-value=7.2e-08  Score=73.66  Aligned_cols=77  Identities=26%  Similarity=0.417  Sum_probs=65.0

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECC-----------CcHHHHHhcCCCCCccEEEEE-cCC-eEEEEE
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVD-----------WLPEAAKAFDLIDVLPTFVLV-KRG-KEIDRV  145 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d-----------~~~~l~~~~~i~~~~Ptiv~~-~~G-k~i~~~  145 (162)
                      +++||.+.|++|+.+.|.+..++++| ++.++.|++|           .+..+++++|+ ..+|+++++ +++ +...-.
T Consensus       124 L~~F~~~~C~~C~~~~pil~~~~~~y-g~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v-~~~Pal~Lv~~~~~~~~pv~  201 (215)
T PF13728_consen  124 LFFFYRSDCPYCQQQAPILQQFADKY-GFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGV-KVTPALFLVNPNTKKWYPVS  201 (215)
T ss_pred             EEEEEcCCCchhHHHHHHHHHHHHHh-CCEEEEEecCCCCCcCCCCCCCCHHHHHHcCC-CcCCEEEEEECCCCeEEEEe
Confidence            89999999999999999999999999 8888888887           35789999999 999998877 555 555555


Q ss_pred             cCC-CHHHHHHHH
Q 031271          146 VGA-KKDELQMKT  157 (162)
Q Consensus       146 ~g~-~~~~l~~~l  157 (162)
                      .|. +.++|.+-|
T Consensus       202 ~G~~s~~~L~~ri  214 (215)
T PF13728_consen  202 QGFMSLDELEDRI  214 (215)
T ss_pred             eecCCHHHHHHhh
Confidence            677 888887654

>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]

Probab=98.83  E-value=1e-08  Score=73.90  Aligned_cols=68  Identities=22%  Similarity=0.572  Sum_probs=53.2

Q ss_pred             ceEEEEEecCCChhhhhhhHHHHHHHHhcC----CcEEEEEECCCc-------------------------HHHHHhcCC
Q 031271           76 LKVVIYYTAAWCGPCKFIEPYVKDFAAMYT----DVQFIKIDVDWL-------------------------PEAAKAFDL  126 (162)
Q Consensus        76 k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~----~v~f~~vd~d~~-------------------------~~l~~~~~i  126 (162)
                      |.|.++|.|.||++|+.+.|.|.++.++..    .+.++.|+-|..                         .++.++|++
T Consensus        34 KvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky~v  113 (157)
T KOG2501|consen   34 KVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKYEV  113 (157)
T ss_pred             cEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhccc
Confidence            555999999999999999999977766543    366666666532                         368889999


Q ss_pred             CCCccEEEEE-cCCeEEEE
Q 031271          127 IDVLPTFVLV-KRGKEIDR  144 (162)
Q Consensus       127 ~~~~Ptiv~~-~~Gk~i~~  144 (162)
                       ..+|++++. ++|..+..
T Consensus       114 -~~iP~l~i~~~dG~~v~~  131 (157)
T KOG2501|consen  114 -KGIPALVILKPDGTVVTE  131 (157)
T ss_pred             -CcCceeEEecCCCCEehH
Confidence             999998877 78977754

>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B

Probab=98.81  E-value=7.7e-08  Score=61.57  Aligned_cols=69  Identities=25%  Similarity=0.417  Sum_probs=56.3

Q ss_pred             ecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcC-C-CHHHHHHHHH
Q 031271           83 TAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVG-A-KKDELQMKTE  158 (162)
Q Consensus        83 ~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g-~-~~~~l~~~l~  158 (162)
                      ++++|+.|..+...++++...+ ++.+-.+|....+++ .+||+ .++|++++  ||+.+  +.| . +.++|+++|+
T Consensus         6 ~~~~C~~C~~~~~~~~~~~~~~-~i~~ei~~~~~~~~~-~~ygv-~~vPalvI--ng~~~--~~G~~p~~~el~~~l~   76 (76)
T PF13192_consen    6 FSPGCPYCPELVQLLKEAAEEL-GIEVEIIDIEDFEEI-EKYGV-MSVPALVI--NGKVV--FVGRVPSKEELKELLE   76 (76)
T ss_dssp             ECSSCTTHHHHHHHHHHHHHHT-TEEEEEEETTTHHHH-HHTT--SSSSEEEE--TTEEE--EESS--HHHHHHHHHH
T ss_pred             eCCCCCCcHHHHHHHHHHHHhc-CCeEEEEEccCHHHH-HHcCC-CCCCEEEE--CCEEE--EEecCCCHHHHHHHhC
Confidence            6788999999999999999988 577777788666666 99999 99999976  88765  457 4 7899998875

...

>PRK11200 grxA glutaredoxin 1; Provisional

Probab=98.80  E-value=7.1e-08  Score=62.92  Aligned_cols=75  Identities=13%  Similarity=0.295  Sum_probs=58.5

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcH----HHHHhcC--CCCCccEEEEEcCCeEEEEEcCCCHHH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLP----EAAKAFD--LIDVLPTFVLVKRGKEIDRVVGAKKDE  152 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~----~l~~~~~--i~~~~Ptiv~~~~Gk~i~~~~g~~~~~  152 (162)
                      +..|+.+||++|.++.+.|+++..++.++.+..+|++..+    ++...++  . ..+|++++  +|+.+.   |  .++
T Consensus         3 v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~-~~vP~ifi--~g~~ig---g--~~~   74 (85)
T PRK11200          3 VVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPV-ETVPQIFV--DQKHIG---G--CTD   74 (85)
T ss_pred             EEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCC-CcCCEEEE--CCEEEc---C--HHH
Confidence            6789999999999999999999988778999999998653    5555554  5 68999864  887653   2  466


Q ss_pred             HHHHHHHHh
Q 031271          153 LQMKTEKRR  161 (162)
Q Consensus       153 l~~~l~~~~  161 (162)
                      |.+++++++
T Consensus        75 ~~~~~~~~~   83 (85)
T PRK11200         75 FEAYVKENL   83 (85)
T ss_pred             HHHHHHHhc
Confidence            777777664

>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.77  E-value=6.3e-09  Score=78.67  Aligned_cols=80  Identities=28%  Similarity=0.509  Sum_probs=72.7

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCCCHHHHHHHHH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQMKTE  158 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~~~~~l~~~l~  158 (162)
                      +++||++||.+|.++...++.+++..+++.|++.+.++.++++..+.+ ...|.++++.+|+.+.+..|.++..+...+.
T Consensus        21 ~~~f~a~wa~~~~q~~~v~~~~~~~~~~~~~~k~~a~~~~eis~~~~v-~~vp~~~~~~~~~~v~~l~~~~~~~~~~~~~   99 (227)
T KOG0911|consen   21 VLHFWAIWAVVQKQMDQVFDHLAEYFKNAQFLKLEAEEFPEISNLIAV-EAVPYFVFFFLGEKVDRLSGADPPFLVSKVE   99 (227)
T ss_pred             hhhhhhhhhhhhhhHHHHHHHHHHhhhhheeeeehhhhhhHHHHHHHH-hcCceeeeeecchhhhhhhccCcHHHHHHHH
Confidence            999999999999999999999999888899999999999999999999 9999999999999999999986655555544


Q ss_pred             H
Q 031271          159 K  159 (162)
Q Consensus       159 ~  159 (162)
                      .
T Consensus       100 ~  100 (227)
T KOG0911|consen  100 K  100 (227)
T ss_pred             H
Confidence            3

>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol

Probab=98.75  E-value=1.8e-07  Score=63.40  Aligned_cols=96  Identities=20%  Similarity=0.247  Sum_probs=69.6

Q ss_pred             eEeechhhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhhhhhhHHHHHHHH
Q 031271           23 MELQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYVKDFAA  102 (162)
Q Consensus        23 ~~i~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~~~l~~~~~  102 (162)
                      ..+++.++|+++++.+  ..+++                                 +|+=+++.|+-+.+....|++...
T Consensus         2 ~~L~t~eql~~i~~~S--~~~~~---------------------------------~iFKHSt~C~IS~~a~~~~e~~~~   46 (105)
T PF11009_consen    2 KPLTTEEQLEEILEES--KEKPV---------------------------------LIFKHSTRCPISAMALREFEKFWE   46 (105)
T ss_dssp             -E--SHHHHHHHHHH-----SEE---------------------------------EEEEE-TT-HHHHHHHHHHHHHHH
T ss_pred             CccCCHHHHHHHHHhc--ccCcE---------------------------------EEEEeCCCChhhHHHHHHHHHHhh
Confidence            3678899999999874  36677                                 888899999999999999999999


Q ss_pred             hcCC-cEEEEEECCCcH----HHHHhcCCCCCccEEEEEcCCeEEEEEcCC--CHHHH
Q 031271          103 MYTD-VQFIKIDVDWLP----EAAKAFDLIDVLPTFVLVKRGKEIDRVVGA--KKDEL  153 (162)
Q Consensus       103 ~~~~-v~f~~vd~d~~~----~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~--~~~~l  153 (162)
                      ..++ +.++.+|+-+..    .++.+|||...-|.+++++||+.+......  +.+.|
T Consensus        47 ~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~ili~~g~~v~~aSH~~It~~~l  104 (105)
T PF11009_consen   47 ESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESPQVILIKNGKVVWHASHWDITAEAL  104 (105)
T ss_dssp             HHT----EEEEEGGGGHHHHHHHHHHHT----SSEEEEEETTEEEEEEEGGG-SHHHH
T ss_pred             cCCccceEEEEEEEeCchhHHHHHHHhCCCcCCCcEEEEECCEEEEECccccCCHHhc
Confidence            8887 999999987653    678999997899999999999999866544  66655

The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.

>PRK13599 putative peroxiredoxin; Provisional

Probab=98.75  E-value=1.4e-07  Score=72.14  Aligned_cols=103  Identities=13%  Similarity=0.083  Sum_probs=76.2

Q ss_pred             cccceeEEecCCCeeeee---CceE-EEEEecCCChhhhhhhHHHHHHHHhcC--CcEEEEEECCCc-------------
Q 031271           57 CINEMVLNINDGGNVVFW---VLKV-VIYYTAAWCGPCKFIEPYVKDFAAMYT--DVQFIKIDVDWL-------------  117 (162)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~---~k~v-vv~F~a~wC~~C~~~~~~l~~~~~~~~--~v~f~~vd~d~~-------------  117 (162)
                      ..|+|.+.+.+|.....+   ++.+ |+.|+++||+.|....+.|.++.++|.  ++.++.|++|..             
T Consensus         7 ~aPdF~l~t~~G~~~~~~~~~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~   86 (215)
T PRK13599          7 KFPSMEVVTTQGVKRLPEDYAGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDN   86 (215)
T ss_pred             CCCCCEeECCCCcEecHHHHCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHh
Confidence            457888888888866532   3554 678999999999999999999999884  588888877632             


Q ss_pred             --------------HHHHHhcCCCC-------CccEEEEE-cCCeEEEEEc-----CCCHHHHHHHHHHH
Q 031271          118 --------------PEAAKAFDLID-------VLPTFVLV-KRGKEIDRVV-----GAKKDELQMKTEKR  160 (162)
Q Consensus       118 --------------~~l~~~~~i~~-------~~Ptiv~~-~~Gk~i~~~~-----g~~~~~l~~~l~~~  160 (162)
                                    ..+++.||+ .       .+|+++++ ++|++...+.     |.+.+++.+.|+.+
T Consensus        87 ~~~~i~fPil~D~~~~va~~yg~-~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~l  155 (215)
T PRK13599         87 TNIAIPFPVIADDLGKVSNQLGM-IHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKAL  155 (215)
T ss_pred             cCCCCceeEEECCCchHHHHcCC-CccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHh
Confidence                          246677776 3       57877777 7898877653     33577887777653

>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=98.73  E-value=2.5e-07  Score=64.70  Aligned_cols=101  Identities=21%  Similarity=0.321  Sum_probs=79.1

Q ss_pred             eeEeechhhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhhhhhhHHHHHHH
Q 031271           22 VMELQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYVKDFA  101 (162)
Q Consensus        22 v~~i~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~~~l~~~~  101 (162)
                      +..+++..+.++++..  +.++++                                 +|.|..+|-+.|.++...|.+++
T Consensus         2 L~~L~s~~~VDqAI~~--e~drvv---------------------------------ViRFG~d~d~~Cm~mDeiL~~~a   46 (133)
T PF02966_consen    2 LPHLHSGWHVDQAILS--EEDRVV---------------------------------VIRFGRDWDPVCMQMDEILYKIA   46 (133)
T ss_dssp             SEEE-SHHHHHHHHHH---SSSEE---------------------------------EEEEE-TTSHHHHHHHHHHHHHH
T ss_pred             CcccCccchHHHHHhc--cCceEE---------------------------------EEEeCCCCCccHHHHHHHHHHHH
Confidence            4577888899999974  678988                                 99999999999999999999999


Q ss_pred             HhcCC-cEEEEEECCCcHHHHHhcCCCCCccE-EEEEcCCeEEEEEcCC-----------CHHHHHHHHHH
Q 031271          102 AMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPT-FVLVKRGKEIDRVVGA-----------KKDELQMKTEK  159 (162)
Q Consensus       102 ~~~~~-v~f~~vd~d~~~~l~~~~~i~~~~Pt-iv~~~~Gk~i~~~~g~-----------~~~~l~~~l~~  159 (162)
                      ++.++ ..++.||+++-|++.+.|.+ . .|. +++|-+++.+.--.|.           +..+++..++.
T Consensus        47 ~~v~~~a~IY~vDi~~Vpdfn~~yel-~-dP~tvmFF~rnkhm~vD~GtgnnnKin~~~~~kqe~iDiie~  115 (133)
T PF02966_consen   47 EKVKNFAVIYLVDIDEVPDFNQMYEL-Y-DPCTVMFFFRNKHMMVDFGTGNNNKINWAFEDKQEFIDIIET  115 (133)
T ss_dssp             HHHTTTEEEEEEETTTTHCCHHHTTS---SSEEEEEEETTEEEEEESSSSSSSSBCS--SCHHHHHHHHHH
T ss_pred             HHhhcceEEEEEEcccchhhhccccc-C-CCeEEEEEecCeEEEEEecCCCccEEEEEcCcHHHHHHHHHH
Confidence            99988 88999999999999999999 6 885 5555577766543332           35666666653

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.

>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile

Probab=98.73  E-value=1.3e-07  Score=58.86  Aligned_cols=68  Identities=26%  Similarity=0.477  Sum_probs=51.2

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHHHHHhc----CCCCCccEEEEEcCCeEEEEEcCCCHHHHH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAF----DLIDVLPTFVLVKRGKEIDRVVGAKKDELQ  154 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~l~~~~----~i~~~~Ptiv~~~~Gk~i~~~~g~~~~~l~  154 (162)
                      ++.|+++||++|..+...|.+     .++.+..++++..+...+.+    +. ..+|++++  +|+   .+.|.++..|+
T Consensus         2 v~l~~~~~c~~c~~~~~~l~~-----~~i~~~~~~i~~~~~~~~~~~~~~~~-~~vP~i~~--~~~---~i~g~~~~~l~   70 (73)
T cd02976           2 VTVYTKPDCPYCKATKRFLDE-----RGIPFEEVDVDEDPEALEELKKLNGY-RSVPVVVI--GDE---HLSGFRPDKLR   70 (73)
T ss_pred             EEEEeCCCChhHHHHHHHHHH-----CCCCeEEEeCCCCHHHHHHHHHHcCC-cccCEEEE--CCE---EEecCCHHHHH
Confidence            577999999999999888876     36777788888766544443    68 89999876  553   55678888887


Q ss_pred             HHH
Q 031271          155 MKT  157 (162)
Q Consensus       155 ~~l  157 (162)
                      ++|
T Consensus        71 ~~~   73 (73)
T cd02976          71 ALL   73 (73)
T ss_pred             hhC
Confidence            764

In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou

>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional

Probab=98.73  E-value=3.2e-07  Score=68.65  Aligned_cols=83  Identities=18%  Similarity=0.117  Sum_probs=63.8

Q ss_pred             ceEEEEEe-cCCChhhhhhhHHHHHHHHhcC--CcEEEEEECCC-------------------------cHHHHHhcCCC
Q 031271           76 LKVVIYYT-AAWCGPCKFIEPYVKDFAAMYT--DVQFIKIDVDW-------------------------LPEAAKAFDLI  127 (162)
Q Consensus        76 k~vvv~F~-a~wC~~C~~~~~~l~~~~~~~~--~v~f~~vd~d~-------------------------~~~l~~~~~i~  127 (162)
                      |+|+|+|| +.||+.|....+.|.+..+++.  ++.++.|+.|.                         ...+++.||+ 
T Consensus        32 k~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~ygv-  110 (187)
T PRK10382         32 RWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFDN-  110 (187)
T ss_pred             CeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHcCC-
Confidence            77899999 9999999999999999998884  47888887753                         2357788887 


Q ss_pred             C----Cc--cEEEEE-cCCeEEEEEcC-----CCHHHHHHHHHH
Q 031271          128 D----VL--PTFVLV-KRGKEIDRVVG-----AKKDELQMKTEK  159 (162)
Q Consensus       128 ~----~~--Ptiv~~-~~Gk~i~~~~g-----~~~~~l~~~l~~  159 (162)
                      .    ++  |+.+++ ++|++...+..     .+.+++.+.|+.
T Consensus       111 ~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~a  154 (187)
T PRK10382        111 MREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKA  154 (187)
T ss_pred             CcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHh
Confidence            3    45  876666 79998776532     367777777764

>PRK13191 putative peroxiredoxin; Provisional

Probab=98.73  E-value=2.9e-07  Score=70.32  Aligned_cols=105  Identities=14%  Similarity=0.054  Sum_probs=75.8

Q ss_pred             eccccceeEEecCCCeeee---eCceEEE-EEecCCChhhhhhhHHHHHHHHhcC--CcEEEEEECCCc-----------
Q 031271           55 IYCINEMVLNINDGGNVVF---WVLKVVI-YYTAAWCGPCKFIEPYVKDFAAMYT--DVQFIKIDVDWL-----------  117 (162)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~---~~k~vvv-~F~a~wC~~C~~~~~~l~~~~~~~~--~v~f~~vd~d~~-----------  117 (162)
                      ....|+|.+.+.+|+....   .+|.++| +|+++||+.|....+.|.+..++|.  ++.++.|++|..           
T Consensus        10 G~~aPdF~l~~~~G~~~l~~~~~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw~~~~~   89 (215)
T PRK13191         10 GEKFPEMEVITTHGKIKLPDDYKGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWVMWIE   89 (215)
T ss_pred             CCcCCCCEeecCCCCEEcHHHhCCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHH
Confidence            3456889988888875442   2365555 8889999999999999999999884  588888887632           


Q ss_pred             ----------------HHHHHhcCCCC-------CccEEEEE-cCCeEEEEEc-----CCCHHHHHHHHHHH
Q 031271          118 ----------------PEAAKAFDLID-------VLPTFVLV-KRGKEIDRVV-----GAKKDELQMKTEKR  160 (162)
Q Consensus       118 ----------------~~l~~~~~i~~-------~~Ptiv~~-~~Gk~i~~~~-----g~~~~~l~~~l~~~  160 (162)
                                      ..+++.||+ .       ..|+.+++ ++|++...+.     |.+.+++...|+.+
T Consensus        90 ~~~~~~i~fPllsD~~~~ia~~ygv-~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al  160 (215)
T PRK13191         90 KNLKVEVPFPIIADPMGNVAKRLGM-IHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRAL  160 (215)
T ss_pred             HhcCCCCceEEEECCchHHHHHcCC-cccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence                            246667776 3       36766666 7898877653     33678887777653

>PRK15000 peroxidase; Provisional

Probab=98.73  E-value=2.5e-07  Score=69.92  Aligned_cols=102  Identities=16%  Similarity=0.168  Sum_probs=73.6

Q ss_pred             cccceeEEec--CCCe---eee----eCceEEEEEecC-CChhhhhhhHHHHHHHHhcC--CcEEEEEECCCc-------
Q 031271           57 CINEMVLNIN--DGGN---VVF----WVLKVVIYYTAA-WCGPCKFIEPYVKDFAAMYT--DVQFIKIDVDWL-------  117 (162)
Q Consensus        57 ~~~~~~~~~~--~~~~---~~~----~~k~vvv~F~a~-wC~~C~~~~~~l~~~~~~~~--~v~f~~vd~d~~-------  117 (162)
                      ..|+|.+...  +|+.   +..    .+|.++|+||+. ||+.|....+.|.+..++|.  ++.++.|.+|..       
T Consensus         7 ~aPdF~~~~~~~~g~~~~~~~l~~~~~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~   86 (200)
T PRK15000          7 QAPDFTAAAVLGSGEIVDKFNFKQHTNGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWR   86 (200)
T ss_pred             cCCCCEeecccCCCceeeeeeHHHHhCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHH
Confidence            4577777764  3342   222    367899999994 99999999999999998885  488888877621       


Q ss_pred             ---------------------HHHHHhcCCCC------CccEEEEE-cCCeEEEEEcCC-----CHHHHHHHHHH
Q 031271          118 ---------------------PEAAKAFDLID------VLPTFVLV-KRGKEIDRVVGA-----KKDELQMKTEK  159 (162)
Q Consensus       118 ---------------------~~l~~~~~i~~------~~Ptiv~~-~~Gk~i~~~~g~-----~~~~l~~~l~~  159 (162)
                                           ..+++.||+ .      .+|+.+++ ++|++.....+.     +.+++.+.|+.
T Consensus        87 ~~~~~~~g~~~i~fpllsD~~~~ia~~ygv-~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~a  160 (200)
T PRK15000         87 NTPVDKGGIGPVKYAMVADVKREIQKAYGI-EHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDA  160 (200)
T ss_pred             hhHHHhCCccccCceEEECCCcHHHHHcCC-ccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHH
Confidence                                 246667787 6      68876666 699988876552     56777777764

>TIGR02180 GRX_euk Glutaredoxin

Probab=98.71  E-value=7.2e-08  Score=62.12  Aligned_cols=59  Identities=15%  Similarity=0.296  Sum_probs=46.0

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcC-CcEEEEEECCCcH-----HHHHhcCCCCCccEEEEEcCCeEE
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYT-DVQFIKIDVDWLP-----EAAKAFDLIDVLPTFVLVKRGKEI  142 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~-~v~f~~vd~d~~~-----~l~~~~~i~~~~Ptiv~~~~Gk~i  142 (162)
                      ++.|+++||++|..+.+.|+++.  .+ .+.++.++.+.+.     .+.+.+++ ..+|++++  +|+.+
T Consensus         1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~~~~~~~v~~~~~~~~~~~~l~~~~g~-~~vP~v~i--~g~~i   65 (84)
T TIGR02180         1 VVVFSKSYCPYCKKAKEILAKLN--VKPAYEVVELDQLSNGSEIQDYLEEITGQ-RTVPNIFI--NGKFI   65 (84)
T ss_pred             CEEEECCCChhHHHHHHHHHHcC--CCCCCEEEEeeCCCChHHHHHHHHHHhCC-CCCCeEEE--CCEEE
Confidence            36799999999999999999976  33 3788888877554     36677899 99999854  77654

This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.

>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF

Probab=98.66  E-value=6.9e-07  Score=69.79  Aligned_cols=80  Identities=21%  Similarity=0.338  Sum_probs=65.5

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCc-----------HHHHHhcCCCCCccEEEEE-cC-CeEEEEE
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWL-----------PEAAKAFDLIDVLPTFVLV-KR-GKEIDRV  145 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~-----------~~l~~~~~i~~~~Ptiv~~-~~-Gk~i~~~  145 (162)
                      +++||.+.|++|.++.|.+..+++.| ++.++.|++|..           ...++++|+ ..+|+++++ ++ ++...-.
T Consensus       154 L~fFy~~~C~~C~~~apil~~fa~~y-gi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v-~~~Pal~Lv~~~t~~~~pv~  231 (256)
T TIGR02739       154 LFFFYRGKSPISQKMAPVIQAFAKEY-GISVIPISVDGTLIPGLPNSRSDSGQAQHLGV-KYFPALYLVNPKSQKMSPLA  231 (256)
T ss_pred             EEEEECCCCchhHHHHHHHHHHHHHh-CCeEEEEecCCCCCCCCCCccCChHHHHhcCC-ccCceEEEEECCCCcEEEEe
Confidence            89999999999999999999999999 688888888744           458899999 999987776 55 5555555


Q ss_pred             cCC-CHHHHHHHHHHH
Q 031271          146 VGA-KKDELQMKTEKR  160 (162)
Q Consensus       146 ~g~-~~~~l~~~l~~~  160 (162)
                      .|. +.++|.+.|-..
T Consensus       232 ~G~iS~deL~~Ri~~v  247 (256)
T TIGR02739       232 YGFISQDELKERILNV  247 (256)
T ss_pred             eccCCHHHHHHHHHHH
Confidence            677 888888776543

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.

>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine

Probab=98.64  E-value=5.1e-07  Score=68.32  Aligned_cols=101  Identities=15%  Similarity=0.084  Sum_probs=70.6

Q ss_pred             ccceeEEecCCCeeeee---C-ceE-EEEEecCCChhhhhhhHHHHHHHHhcC--CcEEEEEECCC--------------
Q 031271           58 INEMVLNINDGGNVVFW---V-LKV-VIYYTAAWCGPCKFIEPYVKDFAAMYT--DVQFIKIDVDW--------------  116 (162)
Q Consensus        58 ~~~~~~~~~~~~~~~~~---~-k~v-vv~F~a~wC~~C~~~~~~l~~~~~~~~--~v~f~~vd~d~--------------  116 (162)
                      .|+|.+.+.+|. +..+   . +.+ +++||++||+.|....+.|.++.++|.  ++.++.|.+|.              
T Consensus         5 aP~F~~~~~~g~-~~l~d~~g~k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~i~~~   83 (203)
T cd03016           5 APNFEADTTHGP-IKFHDYLGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWIEDIEEY   83 (203)
T ss_pred             CCCeEEecCCCc-EeHHHHcCCCEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHhhHHHh
Confidence            467777777764 3222   2 434 558899999999999999999998885  48888887763              


Q ss_pred             -------------cHHHHHhcCCCC----Ccc----EEEEE-cCCeEEEEEcC-----CCHHHHHHHHHHH
Q 031271          117 -------------LPEAAKAFDLID----VLP----TFVLV-KRGKEIDRVVG-----AKKDELQMKTEKR  160 (162)
Q Consensus       117 -------------~~~l~~~~~i~~----~~P----tiv~~-~~Gk~i~~~~g-----~~~~~l~~~l~~~  160 (162)
                                   ...+++.||+ .    ..|    +.+++ ++|++...+.+     .+.+++.+.|+.+
T Consensus        84 ~~~~~~fpil~D~~~~ia~~yg~-~~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~ell~~l~~l  153 (203)
T cd03016          84 TGVEIPFPIIADPDREVAKLLGM-IDPDAGSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDEILRVVDAL  153 (203)
T ss_pred             cCCCCceeEEECchHHHHHHcCC-ccccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHH
Confidence                         2356778887 4    233    44555 79988877653     3677888877654

They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an

>PRK13189 peroxiredoxin; Provisional

Probab=98.63  E-value=5.7e-07  Score=69.04  Aligned_cols=104  Identities=13%  Similarity=0.082  Sum_probs=73.4

Q ss_pred             ccccceeEEecCCCeeee---eCceE-EEEEecCCChhhhhhhHHHHHHHHhcC--CcEEEEEECCC-------------
Q 031271           56 YCINEMVLNINDGGNVVF---WVLKV-VIYYTAAWCGPCKFIEPYVKDFAAMYT--DVQFIKIDVDW-------------  116 (162)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~---~~k~v-vv~F~a~wC~~C~~~~~~l~~~~~~~~--~v~f~~vd~d~-------------  116 (162)
                      ...|+|.+.+.+|.....   ..|.+ |++||++||+.|....+.|.++.++|.  ++.++.|.+|.             
T Consensus        13 ~~aPdF~~~~~~g~~~l~d~~~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~~~~~~   92 (222)
T PRK13189         13 DKFPEFEVKTTHGPIKLPDDYKGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKE   92 (222)
T ss_pred             CcCCCcEeEcCCCCEeeHHHhCCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhHHH
Confidence            345778888777764432   23544 557789999999999999999988884  57888877752             


Q ss_pred             --------------cHHHHHhcCCCC-------CccEEEEE-cCCeEEEEEc-----CCCHHHHHHHHHHH
Q 031271          117 --------------LPEAAKAFDLID-------VLPTFVLV-KRGKEIDRVV-----GAKKDELQMKTEKR  160 (162)
Q Consensus       117 --------------~~~l~~~~~i~~-------~~Ptiv~~-~~Gk~i~~~~-----g~~~~~l~~~l~~~  160 (162)
                                    ...+++.||+ .       .+|+.+++ ++|++.....     |.+.+++...|+.+
T Consensus        93 ~~g~~i~fPllsD~~~~ia~~ygv-~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al  162 (222)
T PRK13189         93 KLGVEIEFPIIADDRGEIAKKLGM-ISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKAL  162 (222)
T ss_pred             hcCcCcceeEEEcCccHHHHHhCC-CccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence                          2246777886 4       46766666 7898876654     44677887777653

>KOG3425 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.62  E-value=1.4e-07  Score=64.71  Aligned_cols=60  Identities=22%  Similarity=0.465  Sum_probs=47.2

Q ss_pred             EEEEecC--------CChhhhhhhHHHHHHHHhcCC-cEEEEEECCCc-------HHHHHhcCCCCCccEEEEEcC
Q 031271           79 VIYYTAA--------WCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWL-------PEAAKAFDLIDVLPTFVLVKR  138 (162)
Q Consensus        79 vv~F~a~--------wC~~C~~~~~~l~~~~~~~~~-v~f~~vd~d~~-------~~l~~~~~i~~~~Ptiv~~~~  138 (162)
                      +++|+++        |||.|.+..|.+.+..+..+. +.|+.|++...       ..+....++..++||++-+++
T Consensus        29 fvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~~~lt~vPTLlrw~~  104 (128)
T KOG3425|consen   29 FVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKDPGILTAVPTLLRWKR  104 (128)
T ss_pred             EEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccCCCceeecceeeEEcC
Confidence            8889865        999999999999998887765 99999998643       244444443389999998874

>TIGR02183 GRXA Glutaredoxin, GrxA family

Probab=98.61  E-value=3.9e-07  Score=59.67  Aligned_cols=75  Identities=16%  Similarity=0.302  Sum_probs=56.2

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCc----HHHHHhcC--CCCCccEEEEEcCCeEEEEEcCCCHHH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWL----PEAAKAFD--LIDVLPTFVLVKRGKEIDRVVGAKKDE  152 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~----~~l~~~~~--i~~~~Ptiv~~~~Gk~i~~~~g~~~~~  152 (162)
                      ++.|+.+||++|.++...|+++..+++++.+..+|++..    .++.+.++  . ..+|++++  +|+.+   .|  .++
T Consensus         2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~-~tVP~ifi--~g~~i---gG--~~d   73 (86)
T TIGR02183         2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPV-ETVPQIFV--DEKHV---GG--CTD   73 (86)
T ss_pred             EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCC-CCcCeEEE--CCEEe---cC--HHH
Confidence            577999999999999999999887777788888888753    35666666  4 68999854  77654   23  466


Q ss_pred             HHHHHHHHh
Q 031271          153 LQMKTEKRR  161 (162)
Q Consensus       153 l~~~l~~~~  161 (162)
                      |+++++++.
T Consensus        74 l~~~~~~~~   82 (86)
T TIGR02183        74 FEQLVKENF   82 (86)
T ss_pred             HHHHHHhcc
Confidence            777776654

This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.

>PTZ00137 2-Cys peroxiredoxin; Provisional

Probab=98.57  E-value=1.3e-06  Score=68.46  Aligned_cols=106  Identities=16%  Similarity=0.046  Sum_probs=76.3

Q ss_pred             eeeccccceeEEe-cCCC--eeee----eCceEEEEEe-cCCChhhhhhhHHHHHHHHhcC--CcEEEEEECCC------
Q 031271           53 CLIYCINEMVLNI-NDGG--NVVF----WVLKVVIYYT-AAWCGPCKFIEPYVKDFAAMYT--DVQFIKIDVDW------  116 (162)
Q Consensus        53 ~~~~~~~~~~~~~-~~~~--~~~~----~~k~vvv~F~-a~wC~~C~~~~~~l~~~~~~~~--~v~f~~vd~d~------  116 (162)
                      ......|+|.+.+ .+|+  .+..    .++++||+|| ++||+.|....+.|.+..++|.  ++.++.|.+|.      
T Consensus        69 ~vGd~aPdF~l~~~~~g~~~~vsLsd~~kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~a  148 (261)
T PTZ00137         69 LVGKLMPSFKGTALLNDDLVQFNSSDYFKDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKA  148 (261)
T ss_pred             cCCCCCCCCEeecccCCCceEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHH
Confidence            4455678898876 4554  3332    2367888888 8999999999999999988884  47788777753      


Q ss_pred             ----------------------cHHHHHhcCCCC-----CccEEEEE-cCCeEEEEEc-----CCCHHHHHHHHHH
Q 031271          117 ----------------------LPEAAKAFDLID-----VLPTFVLV-KRGKEIDRVV-----GAKKDELQMKTEK  159 (162)
Q Consensus       117 ----------------------~~~l~~~~~i~~-----~~Ptiv~~-~~Gk~i~~~~-----g~~~~~l~~~l~~  159 (162)
                                            +..+++.||+ .     ..|+.+++ ++|++.....     |.+.+++...|+.
T Consensus       149 w~~~~~~~~g~~~l~fPlLsD~~~~iakayGv-~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~a  223 (261)
T PTZ00137        149 WKELDVRQGGVSPLKFPLFSDISREVSKSFGL-LRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDA  223 (261)
T ss_pred             HHhhhhhhccccCcceEEEEcCChHHHHHcCC-CCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHH
Confidence                                  2357778887 5     47877777 6998887663     3367777777764

>PRK13703 conjugal pilus assembly protein TraF; Provisional

Probab=98.57  E-value=1.9e-06  Score=67.07  Aligned_cols=80  Identities=18%  Similarity=0.279  Sum_probs=64.2

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCC-----------cHHHHHhcCCCCCccEEEEE-cC-CeEEEEE
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDW-----------LPEAAKAFDLIDVLPTFVLV-KR-GKEIDRV  145 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~-----------~~~l~~~~~i~~~~Ptiv~~-~~-Gk~i~~~  145 (162)
                      +++||.+.|++|.++.|.+..+++.| ++.++.|++|.           +...+.++|+ ..+|+++++ ++ ++...-.
T Consensus       147 L~fFy~s~Cp~C~~~aPil~~fa~~y-g~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v-~~~PAl~Lv~~~t~~~~pv~  224 (248)
T PRK13703        147 LMFFYRGQDPIDGQLAQVINDFRDTY-GLSVIPVSVDGVINPLLPDSRTDQGQAQRLGV-KYFPALMLVDPKSGSVRPLS  224 (248)
T ss_pred             EEEEECCCCchhHHHHHHHHHHHHHh-CCeEEEEecCCCCCCCCCCCccChhHHHhcCC-cccceEEEEECCCCcEEEEe
Confidence            89999999999999999999999998 77777777763           2346789999 999998777 44 4665556


Q ss_pred             cCC-CHHHHHHHHHHH
Q 031271          146 VGA-KKDELQMKTEKR  160 (162)
Q Consensus       146 ~g~-~~~~l~~~l~~~  160 (162)
                      .|. +.++|.+.|-..
T Consensus       225 ~G~iS~deL~~Ri~~v  240 (248)
T PRK13703        225 YGFITQDDLAKRFLNV  240 (248)
T ss_pred             eccCCHHHHHHHHHHH
Confidence            687 898888776543

>PTZ00253 tryparedoxin peroxidase; Provisional

Probab=98.50  E-value=1.9e-06  Score=64.90  Aligned_cols=102  Identities=10%  Similarity=0.077  Sum_probs=70.9

Q ss_pred             cccceeEEe----cCCCeeeee---CceEEEEEec-CCChhhhhhhHHHHHHHHhcC--CcEEEEEECCCc---------
Q 031271           57 CINEMVLNI----NDGGNVVFW---VLKVVIYYTA-AWCGPCKFIEPYVKDFAAMYT--DVQFIKIDVDWL---------  117 (162)
Q Consensus        57 ~~~~~~~~~----~~~~~~~~~---~k~vvv~F~a-~wC~~C~~~~~~l~~~~~~~~--~v~f~~vd~d~~---------  117 (162)
                      ..|+|.+..    .++..+..+   +|.++|+||. .||+.|....+.|.++.++|.  ++.++.|+.|..         
T Consensus        11 ~aPdF~~~~~~~~~~~~~v~l~d~~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~~~~~~~~   90 (199)
T PTZ00253         11 PAPSFEEVALMPNGSFKKISLSSYKGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAHLQWTLQ   90 (199)
T ss_pred             cCCCCEeeccccCCCCcEEeHHHHCCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHhC
Confidence            356676543    344555544   3788999995 789999998899999988886  588888877621         


Q ss_pred             -------------------HHHHHhcCCCC------CccEEEEE-cCCeEEEEEcC-----CCHHHHHHHHHH
Q 031271          118 -------------------PEAAKAFDLID------VLPTFVLV-KRGKEIDRVVG-----AKKDELQMKTEK  159 (162)
Q Consensus       118 -------------------~~l~~~~~i~~------~~Ptiv~~-~~Gk~i~~~~g-----~~~~~l~~~l~~  159 (162)
                                         .++++.||+ .      .+|+.+++ ++|++.....+     .+.+++++.|..
T Consensus        91 ~~~~~~~~~~~fpll~D~~~~ia~~ygv-~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~l~a  162 (199)
T PTZ00253         91 ERKKGGLGTMAIPMLADKTKSIARSYGV-LEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLLEA  162 (199)
T ss_pred             hHhhCCccccccceEECcHhHHHHHcCC-cccCCCceEEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHh
Confidence                               256778887 5      35776666 78888776654     255666666654

>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH

Probab=98.50  E-value=8.7e-07  Score=55.91  Aligned_cols=67  Identities=24%  Similarity=0.427  Sum_probs=52.2

Q ss_pred             EEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHHHHHhc---CCCCCccEEEEEcCCeEEEEEcCCCHHHHHHH
Q 031271           80 IYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAF---DLIDVLPTFVLVKRGKEIDRVVGAKKDELQMK  156 (162)
Q Consensus        80 v~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~l~~~~---~i~~~~Ptiv~~~~Gk~i~~~~g~~~~~l~~~  156 (162)
                      ..|+.++|++|++....|++     .++.|-.+|++++++....+   |. ..+|++++  +|+  ..+.|++++.|.++
T Consensus         2 ~ly~~~~Cp~C~~ak~~L~~-----~~i~~~~~di~~~~~~~~~~~~~g~-~~vP~v~~--~g~--~~~~G~~~~~~~~~   71 (72)
T TIGR02194         2 TVYSKNNCVQCKMTKKALEE-----HGIAFEEINIDEQPEAIDYVKAQGF-RQVPVIVA--DGD--LSWSGFRPDKLKAL   71 (72)
T ss_pred             EEEeCCCCHHHHHHHHHHHH-----CCCceEEEECCCCHHHHHHHHHcCC-cccCEEEE--CCC--cEEeccCHHHHHhc
Confidence            45889999999999999976     37888889999887666555   87 89999765  453  24678899988764

NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.

>PRK10877 protein disulfide isomerase II DsbC; Provisional

Probab=98.50  E-value=1.1e-06  Score=67.87  Aligned_cols=78  Identities=18%  Similarity=0.309  Sum_probs=59.5

Q ss_pred             ceEEEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEE--EC---------------------------------------
Q 031271           76 LKVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKI--DV---------------------------------------  114 (162)
Q Consensus        76 k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~v--d~---------------------------------------  114 (162)
                      +.+++.|+-+.||+|+++.+.+.++.+.  ++.+..+  ..                                       
T Consensus       108 k~~I~vFtDp~CpyCkkl~~~l~~~~~~--~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~~c~  185 (232)
T PRK10877        108 KHVITVFTDITCGYCHKLHEQMKDYNAL--GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPASCD  185 (232)
T ss_pred             CEEEEEEECCCChHHHHHHHHHHHHhcC--CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCccccc
Confidence            5668999999999999999999887542  3333222  21                                       


Q ss_pred             ---CCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHHHHHHH
Q 031271          115 ---DWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQMKTEKR  160 (162)
Q Consensus       115 ---d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~~l~~~  160 (162)
                         +++.++++++|+ .++|+++ +.||+.+   .|. ++++|+++|++.
T Consensus       186 ~~v~~~~~la~~lgi-~gTPtiv-~~~G~~~---~G~~~~~~L~~~l~~~  230 (232)
T PRK10877        186 VDIADHYALGVQFGV-QGTPAIV-LSNGTLV---PGYQGPKEMKAFLDEH  230 (232)
T ss_pred             chHHHhHHHHHHcCC-ccccEEE-EcCCeEe---eCCCCHHHHHHHHHHc
Confidence               123468899999 9999998 6899766   688 899999999865

>PRK10329 glutaredoxin-like protein; Provisional

Probab=98.47  E-value=3.7e-06  Score=54.50  Aligned_cols=71  Identities=24%  Similarity=0.354  Sum_probs=56.2

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHHHH---HhcCCCCCccEEEEEcCCeEEEEEcCCCHHHHHH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAA---KAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQM  155 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~l~---~~~~i~~~~Ptiv~~~~Gk~i~~~~g~~~~~l~~  155 (162)
                      +..|+.+||++|.++...|++     .++.|-.+|+++.++.+   ...|. ..+|++++  ++.   .+.|++++.|.+
T Consensus         3 v~lYt~~~Cp~C~~ak~~L~~-----~gI~~~~idi~~~~~~~~~~~~~g~-~~vPvv~i--~~~---~~~Gf~~~~l~~   71 (81)
T PRK10329          3 ITIYTRNDCVQCHATKRAMES-----RGFDFEMINVDRVPEAAETLRAQGF-RQLPVVIA--GDL---SWSGFRPDMINR   71 (81)
T ss_pred             EEEEeCCCCHhHHHHHHHHHH-----CCCceEEEECCCCHHHHHHHHHcCC-CCcCEEEE--CCE---EEecCCHHHHHH
Confidence            567899999999999988865     37899999999877643   34577 89999865  553   456999999999


Q ss_pred             HHHHH
Q 031271          156 KTEKR  160 (162)
Q Consensus       156 ~l~~~  160 (162)
                      ++..+
T Consensus        72 ~~~~~   76 (81)
T PRK10329         72 LHPAP   76 (81)
T ss_pred             HHHhh
Confidence            88765

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=98.46  E-value=1.7e-06  Score=74.56  Aligned_cols=77  Identities=17%  Similarity=0.297  Sum_probs=66.9

Q ss_pred             ceE-EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHH
Q 031271           76 LKV-VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDEL  153 (162)
Q Consensus        76 k~v-vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l  153 (162)
                      +++ +-.|.+++|++|..+...+++++.+.|++..-.+|....++++++|+| .++|++++  ||+.+  +.|. +.+++
T Consensus       476 ~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~v-~~vP~~~i--~~~~~--~~G~~~~~~~  550 (555)
T TIGR03143       476 KPVNIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHFPDLKDEYGI-MSVPAIVV--DDQQV--YFGKKTIEEM  550 (555)
T ss_pred             CCeEEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECcccHHHHHhCCc-eecCEEEE--CCEEE--EeeCCCHHHH
Confidence            444 556789999999999999999999999999999999999999999999 99999987  77755  3465 88888


Q ss_pred             HHHH
Q 031271          154 QMKT  157 (162)
Q Consensus       154 ~~~l  157 (162)
                      .++|
T Consensus       551 ~~~~  554 (555)
T TIGR03143       551 LELI  554 (555)
T ss_pred             HHhh
Confidence            8876

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=98.43  E-value=6.5e-06  Score=59.76  Aligned_cols=106  Identities=21%  Similarity=0.145  Sum_probs=80.8

Q ss_pred             eccccceeEEecCCCeeeeeC---ceEEEEEe-cCCChhhhhhhHHHHHHHHhcC--CcEEEEEECC-------------
Q 031271           55 IYCINEMVLNINDGGNVVFWV---LKVVIYYT-AAWCGPCKFIEPYVKDFAAMYT--DVQFIKIDVD-------------  115 (162)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~---k~vvv~F~-a~wC~~C~~~~~~l~~~~~~~~--~v~f~~vd~d-------------  115 (162)
                      ....|+|++.+.+|+.+..++   ++|||+|| ..+++-|-...-.|.+...++.  ++.++.|..|             
T Consensus         7 G~~aPdF~Lp~~~g~~v~Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F~~k~~   86 (157)
T COG1225           7 GDKAPDFELPDQDGETVSLSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKKFAEKHG   86 (157)
T ss_pred             CCcCCCeEeecCCCCEEehHHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHHhC
Confidence            345788999999999988777   88999999 6799999988888877777775  4888888875             


Q ss_pred             --------CcHHHHHhcCCCCC------------cc-EEEEEcCCeEEEEEcCC----CHHHHHHHHHHHh
Q 031271          116 --------WLPEAAKAFDLIDV------------LP-TFVLVKRGKEIDRVVGA----KKDELQMKTEKRR  161 (162)
Q Consensus       116 --------~~~~l~~~~~i~~~------------~P-tiv~~~~Gk~i~~~~g~----~~~~l~~~l~~~~  161 (162)
                              ...++++.||+ ..            .+ |+++-++|++...+...    ..+++++.|+++.
T Consensus        87 L~f~LLSD~~~~v~~~ygv-~~~k~~~gk~~~~~~R~TfvId~dG~I~~~~~~v~~~~h~~~vl~~l~~l~  156 (157)
T COG1225          87 LTFPLLSDEDGEVAEAYGV-WGEKKMYGKEYMGIERSTFVIDPDGKIRYVWRKVKVKGHADEVLAALKKLA  156 (157)
T ss_pred             CCceeeECCcHHHHHHhCc-ccccccCccccccccceEEEECCCCeEEEEecCCCCcccHHHHHHHHHHhc
Confidence                    34568888887 33            23 45555889988877444    3677888877654

>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=98.42  E-value=1.9e-06  Score=52.27  Aligned_cols=56  Identities=25%  Similarity=0.436  Sum_probs=43.9

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHH----HHHhcCCCCCccEEEEEcCCeEE
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPE----AAKAFDLIDVLPTFVLVKRGKEI  142 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~----l~~~~~i~~~~Ptiv~~~~Gk~i  142 (162)
                      ++.|+.+||++|+++...|++.     ++.+-.+|++..++    +.+..|. ..+|++++  ||+.+
T Consensus         1 V~vy~~~~C~~C~~~~~~L~~~-----~i~y~~~dv~~~~~~~~~l~~~~g~-~~~P~v~i--~g~~I   60 (60)
T PF00462_consen    1 VVVYTKPGCPYCKKAKEFLDEK-----GIPYEEVDVDEDEEAREELKELSGV-RTVPQVFI--DGKFI   60 (60)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHT-----TBEEEEEEGGGSHHHHHHHHHHHSS-SSSSEEEE--TTEEE
T ss_pred             cEEEEcCCCcCHHHHHHHHHHc-----CCeeeEcccccchhHHHHHHHHcCC-CccCEEEE--CCEEC
Confidence            4679999999999999888553     68888888887754    3344599 99999876  77654

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....

>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=98.39  E-value=1.3e-07  Score=72.02  Aligned_cols=78  Identities=33%  Similarity=0.548  Sum_probs=67.6

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCC--cEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTD--VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQM  155 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~--v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~  155 (162)
                      ++.|+++||+.|....|.|+.++.--.+  +.+.+||++.++-|.-+|=+ ...|||.=.++|.. .|+.|. +...++.
T Consensus        43 mi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npgLsGRF~v-taLptIYHvkDGeF-rrysgaRdk~dfis  120 (248)
T KOG0913|consen   43 MIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPGLSGRFLV-TALPTIYHVKDGEF-RRYSGARDKNDFIS  120 (248)
T ss_pred             HHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccccceeeEE-EecceEEEeecccc-ccccCcccchhHHH
Confidence            6889999999999999999998874434  99999999999999999999 99999987788865 456676 8888888


Q ss_pred             HHH
Q 031271          156 KTE  158 (162)
Q Consensus       156 ~l~  158 (162)
                      +++
T Consensus       121 f~~  123 (248)
T KOG0913|consen  121 FEE  123 (248)
T ss_pred             HHH
Confidence            876

>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti

Probab=98.31  E-value=6e-06  Score=58.56  Aligned_cols=37  Identities=19%  Similarity=0.319  Sum_probs=30.3

Q ss_pred             ceEEEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEE
Q 031271           76 LKVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKI  112 (162)
Q Consensus        76 k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~v  112 (162)
                      +++|+.|+.++||+|+.+.|.+.++...++++.+...
T Consensus         6 ~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~~~~~~~   42 (154)
T cd03023           6 DVTIVEFFDYNCGYCKKLAPELEKLLKEDPDVRVVFK   42 (154)
T ss_pred             CEEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEE
Confidence            4458999999999999999999998887876555443

It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=98.27  E-value=9.5e-06  Score=69.40  Aligned_cols=76  Identities=20%  Similarity=0.320  Sum_probs=66.0

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHHHH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQMKT  157 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~~l  157 (162)
                      +..|.+++|++|......+++++...|++.+-.+|....++++.+|++ .++|++++  ||+.+  +.|. +.++|.+.+
T Consensus       120 i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~~~~~~~~~~v-~~VP~~~i--~~~~~--~~g~~~~~~~~~~~  194 (517)
T PRK15317        120 FETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDGALFQDEVEARNI-MAVPTVFL--NGEEF--GQGRMTLEEILAKL  194 (517)
T ss_pred             EEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEchhCHhHHHhcCC-cccCEEEE--CCcEE--EecCCCHHHHHHHH
Confidence            788999999999999999999999999999999999999999999999 99999976  66544  3465 777777776


Q ss_pred             HH
Q 031271          158 EK  159 (162)
Q Consensus       158 ~~  159 (162)
                      .+
T Consensus       195 ~~  196 (517)
T PRK15317        195 DT  196 (517)
T ss_pred             hc
Confidence            54

>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold

Probab=98.26  E-value=5.1e-06  Score=62.38  Aligned_cols=74  Identities=20%  Similarity=0.317  Sum_probs=53.2

Q ss_pred             ceEEEEEecCCChhhhhhhHHHHHHHHhcCCc--EEEEEEC---------------------------------------
Q 031271           76 LKVVIYYTAAWCGPCKFIEPYVKDFAAMYTDV--QFIKIDV---------------------------------------  114 (162)
Q Consensus        76 k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~v--~f~~vd~---------------------------------------  114 (162)
                      +++++.|+.+.|++|+++.+.+.+   ...++  .++.+.+                                       
T Consensus        78 ~~~i~~f~D~~Cp~C~~~~~~l~~---~~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~~~~  154 (197)
T cd03020          78 KRVVYVFTDPDCPYCRKLEKELKP---NADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPAASC  154 (197)
T ss_pred             CEEEEEEECCCCccHHHHHHHHhh---ccCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCcccc
Confidence            566999999999999999998876   12232  2222221                                       


Q ss_pred             ----CCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHHHH
Q 031271          115 ----DWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQMKT  157 (162)
Q Consensus       115 ----d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~~l  157 (162)
                          +++..+++++|+ .++|+++ +.+|+.+   .|. ++++|.++|
T Consensus       155 ~~~i~~~~~l~~~~gi-~gtPtii-~~~G~~~---~G~~~~~~l~~~L  197 (197)
T cd03020         155 DNPVAANLALGRQLGV-NGTPTIV-LADGRVV---PGAPPAAQLEALL  197 (197)
T ss_pred             CchHHHHHHHHHHcCC-CcccEEE-ECCCeEe---cCCCCHHHHHhhC
Confidence                123468889999 9999997 7888764   577 778887764

They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.

>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=98.23  E-value=6.4e-06  Score=52.74  Aligned_cols=58  Identities=17%  Similarity=0.314  Sum_probs=44.5

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcH-----HHHHhcCCCCCccEEEEEcCCeEE
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLP-----EAAKAFDLIDVLPTFVLVKRGKEI  142 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~-----~l~~~~~i~~~~Ptiv~~~~Gk~i  142 (162)
                      ++.|+++|||+|..+.+.|+++..   .+.++.++.+...     .+.+.+|. ..+|++  |.+|+.+
T Consensus         2 v~~y~~~~Cp~C~~~~~~l~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~g~-~~~P~v--~~~g~~i   64 (82)
T cd03419           2 VVVFSKSYCPYCKRAKSLLKELGV---KPAVVELDQHEDGSEIQDYLQELTGQ-RTVPNV--FIGGKFI   64 (82)
T ss_pred             EEEEEcCCCHHHHHHHHHHHHcCC---CcEEEEEeCCCChHHHHHHHHHHhCC-CCCCeE--EECCEEE
Confidence            577999999999999999998755   4677778777552     35566788 999997  4477654

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes

>TIGR02189 GlrX-like_plant Glutaredoxin-like family

Probab=98.21  E-value=6e-06  Score=55.53  Aligned_cols=56  Identities=16%  Similarity=0.296  Sum_probs=40.1

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHH-------HHHhcCCCCCccEEEEEcCCeEE
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPE-------AAKAFDLIDVLPTFVLVKRGKEI  142 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~-------l~~~~~i~~~~Ptiv~~~~Gk~i  142 (162)
                      ++.|..+|||+|.++...|.+.     ++.|..+|+|..++       +.+..|. ..+|.++  -+|+.+
T Consensus        10 Vvvysk~~Cp~C~~ak~~L~~~-----~i~~~~vdid~~~~~~~~~~~l~~~tg~-~tvP~Vf--i~g~~i   72 (99)
T TIGR02189        10 VVIFSRSSCCMCHVVKRLLLTL-----GVNPAVHEIDKEPAGKDIENALSRLGCS-PAVPAVF--VGGKLV   72 (99)
T ss_pred             EEEEECCCCHHHHHHHHHHHHc-----CCCCEEEEcCCCccHHHHHHHHHHhcCC-CCcCeEE--ECCEEE
Confidence            5679999999999999888775     45555666665432       3444577 8999974  477655

This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.

>TIGR02190 GlrX-dom Glutaredoxin-family domain

Probab=98.21  E-value=9e-06  Score=52.23  Aligned_cols=56  Identities=20%  Similarity=0.271  Sum_probs=43.7

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCc---HHHHHhcCCCCCccEEEEEcCCeEE
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWL---PEAAKAFDLIDVLPTFVLVKRGKEI  142 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~---~~l~~~~~i~~~~Ptiv~~~~Gk~i  142 (162)
                      |+.|+.+||++|.+....|++.     ++.|..+|++..   .++....|. ..+|.+++  +|+.+
T Consensus        10 V~ly~~~~Cp~C~~ak~~L~~~-----gi~y~~idi~~~~~~~~~~~~~g~-~~vP~i~i--~g~~i   68 (79)
T TIGR02190        10 VVVFTKPGCPFCAKAKATLKEK-----GYDFEEIPLGNDARGRSLRAVTGA-TTVPQVFI--GGKLI   68 (79)
T ss_pred             EEEEECCCCHhHHHHHHHHHHc-----CCCcEEEECCCChHHHHHHHHHCC-CCcCeEEE--CCEEE
Confidence            6779999999999999998753     677777888765   345566788 99999864  77654

This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.

>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=98.20  E-value=1.8e-05  Score=51.14  Aligned_cols=75  Identities=19%  Similarity=0.295  Sum_probs=57.7

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcC--C--eEEEEEcCC-CHHHH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKR--G--KEIDRVVGA-KKDEL  153 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~--G--k~i~~~~g~-~~~~l  153 (162)
                      ++.|+.+.|+-|..+...+.++.... .+.+-.||+++++++..+|+.  .+|.+.+-..  .  ...  ..+. +.++|
T Consensus         2 l~l~~k~~C~LC~~a~~~L~~~~~~~-~~~l~~vDI~~d~~l~~~Y~~--~IPVl~~~~~~~~~~~~~--~~~~~d~~~L   76 (81)
T PF05768_consen    2 LTLYTKPGCHLCDEAKEILEEVAAEF-PFELEEVDIDEDPELFEKYGY--RIPVLHIDGIRQFKEQEE--LKWRFDEEQL   76 (81)
T ss_dssp             EEEEE-SSSHHHHHHHHHHHHCCTTS-TCEEEEEETTTTHHHHHHSCT--STSEEEETT-GGGCTSEE--EESSB-HHHH
T ss_pred             EEEEcCCCCChHHHHHHHHHHHHhhc-CceEEEEECCCCHHHHHHhcC--CCCEEEEcCcccccccce--eCCCCCHHHH
Confidence            68899999999999999999876654 399999999999999999997  8998765320  0  222  2344 99999


Q ss_pred             HHHHH
Q 031271          154 QMKTE  158 (162)
Q Consensus       154 ~~~l~  158 (162)
                      .++|+
T Consensus        77 ~~~L~   81 (81)
T PF05768_consen   77 RAWLE   81 (81)
T ss_dssp             HHHHH
T ss_pred             HHHhC
Confidence            99885

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.

>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=98.14  E-value=1.7e-05  Score=48.78  Aligned_cols=57  Identities=19%  Similarity=0.325  Sum_probs=43.5

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHH----HHHhcCCCCCccEEEEEcCCeEEE
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPE----AAKAFDLIDVLPTFVLVKRGKEID  143 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~----l~~~~~i~~~~Ptiv~~~~Gk~i~  143 (162)
                      ++.|+++||++|+.+.+.|.+.     ++.+..+|++.+++    +.+..+. ..+|+++  .+|+.+.
T Consensus         2 v~ly~~~~Cp~C~~~~~~L~~~-----~i~~~~~di~~~~~~~~~l~~~~~~-~~~P~~~--~~~~~ig   62 (72)
T cd02066           2 VVVFSKSTCPYCKRAKRLLESL-----GIEFEEIDILEDGELREELKELSGW-PTVPQIF--INGEFIG   62 (72)
T ss_pred             EEEEECCCCHHHHHHHHHHHHc-----CCcEEEEECCCCHHHHHHHHHHhCC-CCcCEEE--ECCEEEe
Confidence            4678999999999999998876     37778888887654    3445577 7889774  4786664

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which

>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]

Probab=98.14  E-value=1e-05  Score=61.15  Aligned_cols=106  Identities=24%  Similarity=0.316  Sum_probs=85.0

Q ss_pred             CCceeEeechhhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhhhhhhHHHH
Q 031271           19 TPLVMELQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYVK   98 (162)
Q Consensus        19 ~~~v~~i~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~~~l~   98 (162)
                      .+.|.++.+..+|.+.+... .+..++                                 +|..|-+.-.-|-.+...+.
T Consensus       137 ~~~V~El~~gkqfld~idke-~ks~~i---------------------------------~VhIYEdgi~gcealn~~~~  182 (273)
T KOG3171|consen  137 YGFVYELETGKQFLDTIDKE-LKSTTI---------------------------------VVHIYEDGIKGCEALNSSLT  182 (273)
T ss_pred             cceEEEeccchhHHHHHhcc-cceEEE---------------------------------EEEEecCCCchHHHHhhhHH
Confidence            46788888888888888752 234555                                 89999999999999999999


Q ss_pred             HHHHhcCCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC--------CHHHHHHHHHHH
Q 031271           99 DFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA--------KKDELQMKTEKR  160 (162)
Q Consensus        99 ~~~~~~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~--------~~~~l~~~l~~~  160 (162)
                      =++.+||-+.|+++-.+.. ...++|.. ..+|++++|++|..|..++..        ....|.++|+++
T Consensus       183 cLAAeyP~vKFckikss~~-gas~~F~~-n~lP~LliYkgGeLIgNFv~va~qlgedffa~dle~FL~e~  250 (273)
T KOG3171|consen  183 CLAAEYPIVKFCKIKSSNT-GASDRFSL-NVLPTLLIYKGGELIGNFVSVAEQLGEDFFAGDLESFLNEY  250 (273)
T ss_pred             HhhccCCceeEEEeeeccc-cchhhhcc-cCCceEEEeeCCchhHHHHHHHHHHhhhhhhhhHHHHHHHc
Confidence            9999999999999876544 66889999 999999999999988655422        355666666653

>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional

Probab=98.13  E-value=2.5e-05  Score=61.01  Aligned_cols=81  Identities=17%  Similarity=0.251  Sum_probs=57.3

Q ss_pred             ceEEEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEEC-----C-----------------------------------
Q 031271           76 LKVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDV-----D-----------------------------------  115 (162)
Q Consensus        76 k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~-----d-----------------------------------  115 (162)
                      +.+|+.|+-+.|++|+++.+.+.++.+. .++.+..+-.     +                                   
T Consensus       118 k~~I~vFtDp~CpyC~kl~~~l~~~~~~-g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~~~~~~  196 (251)
T PRK11657        118 PRIVYVFADPNCPYCKQFWQQARPWVDS-GKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGLKPPAS  196 (251)
T ss_pred             CeEEEEEECCCChhHHHHHHHHHHHhhc-CceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCCCcccc
Confidence            5668899999999999999988877654 2333332211     0                                   


Q ss_pred             ----------CcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHHHHH
Q 031271          116 ----------WLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQMKTE  158 (162)
Q Consensus       116 ----------~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~~l~  158 (162)
                                ++..+++++|+ .++|++++-.+...+..+.|+ .+++|.+.|.
T Consensus       197 ~~~~~~~~i~~n~~l~~~lGv-~GTPaiv~~d~~G~~~~v~G~~~~~~L~~~l~  249 (251)
T PRK11657        197 IPAAVRKQLADNQKLMDDLGA-NATPAIYYMDKDGTLQQVVGLPDPAQLAEIMG  249 (251)
T ss_pred             CCHHHHHHHHHHHHHHHHcCC-CCCCEEEEECCCCCEEEecCCCCHHHHHHHhC
Confidence                      11247788999 999999987532344566788 7899988875

>PHA03050 glutaredoxin; Provisional

Probab=98.11  E-value=1.3e-05  Score=54.78  Aligned_cols=62  Identities=11%  Similarity=0.087  Sum_probs=43.2

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECC-Cc----HHHHHhcCCCCCccEEEEEcCCeEEE
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVD-WL----PEAAKAFDLIDVLPTFVLVKRGKEID  143 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d-~~----~~l~~~~~i~~~~Ptiv~~~~Gk~i~  143 (162)
                      ++.|..+|||+|.++...|++..-.++.+..+.++-. ..    .++.+..|. ..+|++++  +|+.+.
T Consensus        15 V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~-~tVP~IfI--~g~~iG   81 (108)
T PHA03050         15 VTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGG-RTVPRIFF--GKTSIG   81 (108)
T ss_pred             EEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCC-CCcCEEEE--CCEEEe
Confidence            5779999999999999999887544444444444421 12    346667788 99999855  787653

>TIGR02181 GRX_bact Glutaredoxin, GrxC family

Probab=98.09  E-value=1.5e-05  Score=50.87  Aligned_cols=55  Identities=20%  Similarity=0.356  Sum_probs=41.4

Q ss_pred             EEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHHHH----HhcCCCCCccEEEEEcCCeEE
Q 031271           80 IYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAA----KAFDLIDVLPTFVLVKRGKEI  142 (162)
Q Consensus        80 v~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~l~----~~~~i~~~~Ptiv~~~~Gk~i  142 (162)
                      ..|+.+||++|.++...|++.     ++.|-.+|++.+++..    +..|. ..+|++++  +|+.+
T Consensus         2 ~ly~~~~Cp~C~~a~~~L~~~-----~i~~~~~di~~~~~~~~~~~~~~g~-~~vP~i~i--~g~~i   60 (79)
T TIGR02181         2 TIYTKPYCPYCTRAKALLSSK-----GVTFTEIRVDGDPALRDEMMQRSGR-RTVPQIFI--GDVHV   60 (79)
T ss_pred             EEEecCCChhHHHHHHHHHHc-----CCCcEEEEecCCHHHHHHHHHHhCC-CCcCEEEE--CCEEE
Confidence            568899999999999999864     5677777887766543    44577 89999854  77654

This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.

>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria

Probab=98.07  E-value=5.9e-05  Score=47.32  Aligned_cols=66  Identities=17%  Similarity=0.227  Sum_probs=47.0

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHH---HHHhcCCCCCccEEEEEcCCeEEEEEcCCCHHHHHH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPE---AAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQM  155 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~---l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~~~~~l~~  155 (162)
                      ++.|..+||++|.+....|++.     ++.|..+|++.+..   +....|. ..+|.++  -+|+.+.   |  .++|.+
T Consensus         3 v~lys~~~Cp~C~~ak~~L~~~-----~i~~~~~~v~~~~~~~~~~~~~g~-~~vP~if--i~g~~ig---g--~~~l~~   69 (72)
T cd03029           3 VSLFTKPGCPFCARAKAALQEN-----GISYEEIPLGKDITGRSLRAVTGA-MTVPQVF--IDGELIG---G--SDDLEK   69 (72)
T ss_pred             EEEEECCCCHHHHHHHHHHHHc-----CCCcEEEECCCChhHHHHHHHhCC-CCcCeEE--ECCEEEe---C--HHHHHH
Confidence            6779999999999998888753     67777778776543   3344688 8999974  4776552   3  455555


Q ss_pred             HH
Q 031271          156 KT  157 (162)
Q Consensus       156 ~l  157 (162)
                      +|
T Consensus        70 ~l   71 (72)
T cd03029          70 YF   71 (72)
T ss_pred             Hh
Confidence            44

PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.

>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions

Probab=98.06  E-value=3.2e-05  Score=48.71  Aligned_cols=57  Identities=19%  Similarity=0.505  Sum_probs=44.5

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHH----HHHhcCCCCCccEEEEEcCCeEEE
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPE----AAKAFDLIDVLPTFVLVKRGKEID  143 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~----l~~~~~i~~~~Ptiv~~~~Gk~i~  143 (162)
                      ++.|+.+||++|+++...|++.     ++.|..+|++..++    +.+..+. ..+|++++  ||+.+.
T Consensus         3 v~ly~~~~C~~C~ka~~~L~~~-----gi~~~~~di~~~~~~~~el~~~~g~-~~vP~v~i--~~~~iG   63 (73)
T cd03027           3 VTIYSRLGCEDCTAVRLFLREK-----GLPYVEINIDIFPERKAELEERTGS-SVVPQIFF--NEKLVG   63 (73)
T ss_pred             EEEEecCCChhHHHHHHHHHHC-----CCceEEEECCCCHHHHHHHHHHhCC-CCcCEEEE--CCEEEe
Confidence            5678899999999999988873     67788888887664    5556677 89999854  776553

GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.

>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=98.05  E-value=3.4e-05  Score=48.53  Aligned_cols=56  Identities=23%  Similarity=0.274  Sum_probs=42.3

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHHHH----HhcCCCC-CccEEEEEcCCeEE
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAA----KAFDLID-VLPTFVLVKRGKEI  142 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~l~----~~~~i~~-~~Ptiv~~~~Gk~i  142 (162)
                      +..|+.+||++|.++...|++.     ++.|-.+|++.+++..    +.++. . .+|+++  -+|+.+
T Consensus         2 i~ly~~~~Cp~C~~ak~~L~~~-----~i~~~~i~i~~~~~~~~~~~~~~~~-~~~vP~v~--i~g~~i   62 (75)
T cd03418           2 VEIYTKPNCPYCVRAKALLDKK-----GVDYEEIDVDGDPALREEMINRSGG-RRTVPQIF--IGDVHI   62 (75)
T ss_pred             EEEEeCCCChHHHHHHHHHHHC-----CCcEEEEECCCCHHHHHHHHHHhCC-CCccCEEE--ECCEEE
Confidence            5679999999999999888763     6788888888765543    34576 6 899875  477655

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i

>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A

Probab=98.04  E-value=0.00026  Score=51.76  Aligned_cols=89  Identities=19%  Similarity=0.302  Sum_probs=69.8

Q ss_pred             eeeeeCce-EEEEEecCCChhhhhhhHHHHHHHHhcCC-cEEEEEECCCcHHHHHhcCCCC--CccEEEEEc--CCeEEE
Q 031271           70 NVVFWVLK-VVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLID--VLPTFVLVK--RGKEID  143 (162)
Q Consensus        70 ~~~~~~k~-vvv~F~a~wC~~C~~~~~~l~~~~~~~~~-v~f~~vd~d~~~~l~~~~~i~~--~~Ptiv~~~--~Gk~i~  143 (162)
                      .+...+++ +++.|..........+...+.++++++++ +.|+.+|.+..+.+++.||+ .  .+|+++++.  +++...
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~~~~~~~~~~i-~~~~~P~~vi~~~~~~~~~~  167 (184)
T PF13848_consen   89 KLFSSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADDFPRLLKYFGI-DEDDLPALVIFDSNKGKYYY  167 (184)
T ss_dssp             HHHSTSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTTTHHHHHHTTT-TTSSSSEEEEEETTTSEEEE
T ss_pred             HHhcCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHHhHHHHHHcCC-CCccCCEEEEEECCCCcEEc
Confidence            33344444 57778777788888999999999999988 99999999999999999999 7  999999885  454332


Q ss_pred             EEcCC-CHHHHHHHHHH
Q 031271          144 RVVGA-KKDELQMKTEK  159 (162)
Q Consensus       144 ~~~g~-~~~~l~~~l~~  159 (162)
                      ...+. +.+.|.+|++.
T Consensus       168 ~~~~~~~~~~i~~Fl~d  184 (184)
T PF13848_consen  168 LPEGEITPESIEKFLND  184 (184)
T ss_dssp             --SSCGCHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHhcC
Confidence            23566 89999999864

...

>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []

Probab=98.03  E-value=0.00021  Score=57.66  Aligned_cols=116  Identities=15%  Similarity=0.108  Sum_probs=73.6

Q ss_pred             cCCCCCCCCcccCCCceeEeechhhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecC
Q 031271            6 SSLENPHGFIHAKTPLVMELQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAA   85 (162)
Q Consensus         6 ~~~~~~~~~~~~~~~~v~~i~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~   85 (162)
                      ...++-....+-+.-+|..++. .+|.+.++.    -..+                                 +|+||.+
T Consensus        20 ~aeegLefP~YDGkDRVi~Lne-KNfk~~lKk----yd~l---------------------------------~l~yh~p   61 (383)
T PF01216_consen   20 RAEEGLEFPEYDGKDRVIDLNE-KNFKRALKK----YDVL---------------------------------VLYYHEP   61 (383)
T ss_dssp             ------SSSS-SSS--CEEE-T-TTHHHHHHH-----SEE---------------------------------EEEEE--
T ss_pred             chhhccCCccCCCccceEEcch-hHHHHHHHh----hcEE---------------------------------EEEEecC
Confidence            3444555556777888888854 788888764    3455                                 7888877


Q ss_pred             CChhhhhhhHHH------HHH-HHhc--CCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCCCHHHHHHH
Q 031271           86 WCGPCKFIEPYV------KDF-AAMY--TDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQMK  156 (162)
Q Consensus        86 wC~~C~~~~~~l------~~~-~~~~--~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~~~~~l~~~  156 (162)
                      -- ..+..+..+      -++ ++-+  .++-|..||..+...+++++|+ ...+++.+|++|+.+....-.+++.|..|
T Consensus        62 ~~-~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~klAKKLgv-~E~~SiyVfkd~~~IEydG~~saDtLVeF  139 (383)
T PF01216_consen   62 VE-SDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAKLAKKLGV-EEEGSIYVFKDGEVIEYDGERSADTLVEF  139 (383)
T ss_dssp             ST-SSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHHHHHHHT---STTEEEEEETTEEEEE-S--SHHHHHHH
T ss_pred             Cc-cCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHHHHHhcCc-cccCcEEEEECCcEEEecCccCHHHHHHH
Confidence            53 333322222      222 2322  4699999999999999999999 99999999999999998733499999999


Q ss_pred             HHHHh
Q 031271          157 TEKRR  161 (162)
Q Consensus       157 l~~~~  161 (162)
                      |-...
T Consensus       140 l~dl~  144 (383)
T PF01216_consen  140 LLDLL  144 (383)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            97664

It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=98.03  E-value=6.1e-05  Score=64.44  Aligned_cols=76  Identities=21%  Similarity=0.345  Sum_probs=65.4

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHHHH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQMKT  157 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~~l  157 (162)
                      +..|.++.||+|......+++++...|++..-.+|....++++.+|++ .++|++++  ||+.+  +.|. +.+++.+.+
T Consensus       121 i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~~~~~~~~~~v-~~VP~~~i--~~~~~--~~g~~~~~~~~~~l  195 (515)
T TIGR03140       121 FETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDGALFQDEVEALGI-QGVPAVFL--NGEEF--HNGRMDLAELLEKL  195 (515)
T ss_pred             EEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEchhCHHHHHhcCC-cccCEEEE--CCcEE--EecCCCHHHHHHHH
Confidence            788999999999999999999999999999999999999999999999 99999976  66544  3465 777776666


Q ss_pred             HH
Q 031271          158 EK  159 (162)
Q Consensus       158 ~~  159 (162)
                      .+
T Consensus       196 ~~  197 (515)
T TIGR03140       196 EE  197 (515)
T ss_pred             hh
Confidence            54

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A

Probab=97.99  E-value=7.7e-05  Score=53.53  Aligned_cols=78  Identities=23%  Similarity=0.356  Sum_probs=59.4

Q ss_pred             ceEEEEEecCCChhhhhhhHHHHHHHHhc--CC-cEEEEEECCC------------------------------------
Q 031271           76 LKVVIYYTAAWCGPCKFIEPYVKDFAAMY--TD-VQFIKIDVDW------------------------------------  116 (162)
Q Consensus        76 k~vvv~F~a~wC~~C~~~~~~l~~~~~~~--~~-v~f~~vd~d~------------------------------------  116 (162)
                      +++|+.|+...|++|.++.+.+.++.+++  ++ +.|...++-.                                    
T Consensus        13 ~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (162)
T PF13462_consen   13 PITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPLDKHSSLRAAMAAECVADQGKYFWFFHELLFSQQENF   92 (162)
T ss_dssp             SEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHCHST
T ss_pred             CeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEccccchhHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhcc
Confidence            55699999999999999999999998888  44 7777765510                                    


Q ss_pred             --------------------------------cHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHHHHHH
Q 031271          117 --------------------------------LPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQMKTEK  159 (162)
Q Consensus       117 --------------------------------~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~~l~~  159 (162)
                                                      ....++++|| .++||+++  ||+.+   .+. +.++|.++|++
T Consensus        93 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~tPt~~i--nG~~~---~~~~~~~~l~~~Id~  162 (162)
T PF13462_consen   93 ENKKDIAANAGGSNEQFNKCLNSDEIKAQLEADSQLARQLGI-TGTPTFFI--NGKYV---VGPYTIEELKELIDK  162 (162)
T ss_dssp             SSHHHHHHHTTSHHHHHHHHHTSHHHHHHHHHHHHHHHHHT--SSSSEEEE--TTCEE---ETTTSHHHHHHHHHH
T ss_pred             chhHHHHHHcCCCHHHHHHHhhchHHHHHHHHHHHHHHHcCC-ccccEEEE--CCEEe---CCCCCHHHHHHHHcC
Confidence                                            0124567788 99999988  99885   455 99999999875

...

>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]

Probab=97.93  E-value=3.4e-05  Score=57.77  Aligned_cols=105  Identities=14%  Similarity=0.254  Sum_probs=82.6

Q ss_pred             ccCCCceeEeechhhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhhhhhhH
Q 031271           16 HAKTPLVMELQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEP   95 (162)
Q Consensus        16 ~~~~~~v~~i~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~~   95 (162)
                      .++++.|.+|+. .+|.+.+..|.+ +-.|                                 +|..|...-+.|.-+..
T Consensus        87 k~kfG~V~~ISg-~dyv~EVT~As~-gvwV---------------------------------vvhLy~~gvp~c~Ll~~  131 (240)
T KOG3170|consen   87 KAKFGEVFPISG-PDYVKEVTKASE-GVWV---------------------------------VVHLYKQGVPLCALLSH  131 (240)
T ss_pred             Hhcccceeeccc-hHHHHHHHhccC-ccEE---------------------------------EEEeeccccHHHHHHHH
Confidence            457888888855 677777776643 4555                                 89999999999999999


Q ss_pred             HHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcC------C--CHHHHHHHHHH
Q 031271           96 YVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVG------A--KKDELQMKTEK  159 (162)
Q Consensus        96 ~l~~~~~~~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g------~--~~~~l~~~l~~  159 (162)
                      .|+.++..||.+.|+++-.+.+.+   .|-- ...||+++|..|.+...+.|      .  +.+.+..++-+
T Consensus       132 ~l~~la~kfp~iKFVki~at~cIp---NYPe-~nlPTl~VY~~G~lk~q~igll~lgG~n~t~ed~e~~L~q  199 (240)
T KOG3170|consen  132 HLQSLACKFPQIKFVKIPATTCIP---NYPE-SNLPTLLVYHHGALKKQMIGLLELGGMNLTMEDVEDFLVQ  199 (240)
T ss_pred             HHHHHhhcCCcceEEecccccccC---CCcc-cCCCeEEEeecchHHhheehhhhhcCCcCCHHHHHHHHHh
Confidence            999999999999999998776633   5666 89999999988876665543      3  57777776654

>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold

Probab=97.91  E-value=9e-05  Score=54.05  Aligned_cols=36  Identities=22%  Similarity=0.331  Sum_probs=30.0

Q ss_pred             CceEEEEEecCCChhhhhhhHHHHHHHHhcCC-cEEE
Q 031271           75 VLKVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFI  110 (162)
Q Consensus        75 ~k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~-v~f~  110 (162)
                      .+++|+.|+...||+|+.+.+.+.++.+++++ +.|.
T Consensus        15 ~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~~   51 (178)
T cd03019          15 GKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKFE   51 (178)
T ss_pred             CCcEEEEEECCCCcchhhhhHHHHHHHHhCCCCceEE
Confidence            35559999999999999999999999888875 4443

It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.

>TIGR00365 monothiol glutaredoxin, Grx4 family

Probab=97.85  E-value=0.00013  Score=48.87  Aligned_cols=50  Identities=20%  Similarity=0.284  Sum_probs=38.2

Q ss_pred             CCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHHH----HHhcCCCCCccEEEEEcCCeEE
Q 031271           85 AWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEA----AKAFDLIDVLPTFVLVKRGKEI  142 (162)
Q Consensus        85 ~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~l----~~~~~i~~~~Ptiv~~~~Gk~i  142 (162)
                      +|||+|.++...|.+.     ++.|..+|++.++++    .+..|. ..+|.+++  +|+.+
T Consensus        25 ~~Cp~C~~ak~lL~~~-----~i~~~~~di~~~~~~~~~l~~~tg~-~tvP~vfi--~g~~i   78 (97)
T TIGR00365        25 PQCGFSARAVQILKAC-----GVPFAYVNVLEDPEIRQGIKEYSNW-PTIPQLYV--KGEFV   78 (97)
T ss_pred             CCCchHHHHHHHHHHc-----CCCEEEEECCCCHHHHHHHHHHhCC-CCCCEEEE--CCEEE
Confidence            8999999999988774     567778888776643    445677 89998854  77655

The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.

>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]

Probab=97.84  E-value=0.00017  Score=46.55  Aligned_cols=66  Identities=29%  Similarity=0.402  Sum_probs=46.7

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcH-----HHHHhc-CCCCCccEEEEEcCCeEEEEEcCC-CHH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLP-----EAAKAF-DLIDVLPTFVLVKRGKEIDRVVGA-KKD  151 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~-----~l~~~~-~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~  151 (162)
                      +..|..+|||+|++....|.+     .++.|..++++...     +..++. |. ..+|++++  +|+.+   .|. +.+
T Consensus         3 v~iyt~~~CPyC~~ak~~L~~-----~g~~~~~i~~~~~~~~~~~~~~~~~~g~-~tvP~I~i--~~~~i---gg~~d~~   71 (80)
T COG0695           3 VTIYTKPGCPYCKRAKRLLDR-----KGVDYEEIDVDDDEPEEAREMVKRGKGQ-RTVPQIFI--GGKHV---GGCDDLD   71 (80)
T ss_pred             EEEEECCCCchHHHHHHHHHH-----cCCCcEEEEecCCcHHHHHHHHHHhCCC-CCcCEEEE--CCEEE---eCcccHH
Confidence            577999999999999988885     36777777776544     344455 78 99999876  66533   343 666


Q ss_pred             HHHH
Q 031271          152 ELQM  155 (162)
Q Consensus       152 ~l~~  155 (162)
                      .+..
T Consensus        72 ~~~~   75 (80)
T COG0695          72 ALEA   75 (80)
T ss_pred             HHHh
Confidence            6644

>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long

Probab=97.77  E-value=0.00011  Score=50.10  Aligned_cols=68  Identities=12%  Similarity=0.170  Sum_probs=53.6

Q ss_pred             EEEEecCCC---hhhhhhhHHHHHHHHhcCC-cEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC
Q 031271           79 VIYYTAAWC---GPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA  148 (162)
Q Consensus        79 vv~F~a~wC---~~C~~~~~~l~~~~~~~~~-v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~  148 (162)
                      ++ |++..|   +.|....=++.++.+.+++ .....+..+...++..+||+ ..+|+++++++|+.+..+.|.
T Consensus        30 vl-f~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~~e~~L~~r~gv-~~~PaLvf~R~g~~lG~i~gi  101 (107)
T PF07449_consen   30 VL-FFAGDPARFPETADVAVILPELVKAFPGRFRGAVVARAAERALAARFGV-RRWPALVFFRDGRYLGAIEGI  101 (107)
T ss_dssp             EE-EESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHHHHHHHHHHHT--TSSSEEEEEETTEEEEEEESS
T ss_pred             EE-EECCCCCcCcccccceeEcHHHHHhhhCccceEEECchhHHHHHHHhCC-ccCCeEEEEECCEEEEEecCe
Confidence            45 444444   5555555588999999988 66667777788899999999 999999999999999998887

This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.

>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins

Probab=97.75  E-value=0.00023  Score=46.80  Aligned_cols=50  Identities=16%  Similarity=0.252  Sum_probs=37.4

Q ss_pred             CCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHH----HHHhcCCCCCccEEEEEcCCeEE
Q 031271           85 AWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPE----AAKAFDLIDVLPTFVLVKRGKEI  142 (162)
Q Consensus        85 ~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~----l~~~~~i~~~~Ptiv~~~~Gk~i  142 (162)
                      +||++|.++...|.+.     ++.|-.+|++.+++    +.+..|. ..+|+++  .+|+.+
T Consensus        21 ~~Cp~C~~ak~~L~~~-----~i~y~~idv~~~~~~~~~l~~~~g~-~tvP~vf--i~g~~i   74 (90)
T cd03028          21 PRCGFSRKVVQILNQL-----GVDFGTFDILEDEEVRQGLKEYSNW-PTFPQLY--VNGELV   74 (90)
T ss_pred             CCCcHHHHHHHHHHHc-----CCCeEEEEcCCCHHHHHHHHHHhCC-CCCCEEE--ECCEEE
Confidence            6999999999888875     46677777776654    3455677 8999974  478654

The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein

>PRK10638 glutaredoxin 3; Provisional

Probab=97.71  E-value=0.00026  Score=45.72  Aligned_cols=57  Identities=23%  Similarity=0.314  Sum_probs=42.9

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHH----HHHhcCCCCCccEEEEEcCCeEEE
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPE----AAKAFDLIDVLPTFVLVKRGKEID  143 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~----l~~~~~i~~~~Ptiv~~~~Gk~i~  143 (162)
                      +..|..+||++|+++...|++.     ++.+..+|++..++    +.+..|. ..+|++++  +|+.+.
T Consensus         4 v~ly~~~~Cp~C~~a~~~L~~~-----gi~y~~~dv~~~~~~~~~l~~~~g~-~~vP~i~~--~g~~ig   64 (83)
T PRK10638          4 VEIYTKATCPFCHRAKALLNSK-----GVSFQEIPIDGDAAKREEMIKRSGR-TTVPQIFI--DAQHIG   64 (83)
T ss_pred             EEEEECCCChhHHHHHHHHHHc-----CCCcEEEECCCCHHHHHHHHHHhCC-CCcCEEEE--CCEEEe
Confidence            5678899999999999888864     56677778876653    4455678 89998744  786653

>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]

Probab=97.66  E-value=0.0004  Score=55.28  Aligned_cols=82  Identities=21%  Similarity=0.375  Sum_probs=62.8

Q ss_pred             EEEEecC----CChhhhhhhHHHHHHHHhcC----C-----cEEEEEECCCcHHHHHhcCCCCCccEEEEEc--CCeEE-
Q 031271           79 VIYYTAA----WCGPCKFIEPYVKDFAAMYT----D-----VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVK--RGKEI-  142 (162)
Q Consensus        79 vv~F~a~----wC~~C~~~~~~l~~~~~~~~----~-----v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~--~Gk~i-  142 (162)
                      ++.|.|.    .|.-|+.....+.-++..+.    +     +-|..||.|+.|++.+++++ ..+|++++|+  .|... 
T Consensus        64 IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p~~Fq~l~l-n~~P~l~~f~P~~~n~~~  142 (331)
T KOG2603|consen   64 IVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESPQVFQQLNL-NNVPHLVLFSPAKGNKKR  142 (331)
T ss_pred             EEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccHHHHHHhcc-cCCCeEEEeCCCcccccc
Confidence            7888865    89999999999988877542    1     67899999999999999999 9999999992  23222 


Q ss_pred             -----EEEcCCCHHHHHHHHHHHh
Q 031271          143 -----DRVVGAKKDELQMKTEKRR  161 (162)
Q Consensus       143 -----~~~~g~~~~~l~~~l~~~~  161 (162)
                           ..-.|...|++.+++++..
T Consensus       143 s~~~d~~~~g~~Ae~iaqfv~~~t  166 (331)
T KOG2603|consen  143 SDQMDQQDLGFEAEQIAQFVADRT  166 (331)
T ss_pred             CccchhhhcchhHHHHHHHHHHhh
Confidence                 1122445788888887653

>PRK10954 periplasmic protein disulfide isomerase I; Provisional

Probab=97.66  E-value=0.00034  Score=52.95  Aligned_cols=38  Identities=13%  Similarity=0.271  Sum_probs=30.4

Q ss_pred             ceEEEEEecCCChhhhhhhHHH---HHHHHhcCC-cEEEEEE
Q 031271           76 LKVVIYYTAAWCGPCKFIEPYV---KDFAAMYTD-VQFIKID  113 (162)
Q Consensus        76 k~vvv~F~a~wC~~C~~~~~~l---~~~~~~~~~-v~f~~vd  113 (162)
                      ++.|+.|+.-.||+|..+.+.+   +.+.+.+++ +.|+.+.
T Consensus        38 ~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~v~~~~~~   79 (207)
T PRK10954         38 EPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEGTKMTKYH   79 (207)
T ss_pred             CCeEEEEeCCCCccHHHhcccccchHHHHHhCCCCCeEEEec
Confidence            5558999999999999999876   788888874 6665543

>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=97.63  E-value=0.00084  Score=44.15  Aligned_cols=73  Identities=18%  Similarity=0.040  Sum_probs=53.2

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcC-CcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCC-eEEEEEcCC-CHHHHHH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYT-DVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRG-KEIDRVVGA-KKDELQM  155 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~-~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~G-k~i~~~~g~-~~~~l~~  155 (162)
                      +|-|+.++|.   .....+.+++..++ ++.|..+.   +.+++..+++  ..|++++|+.. .....+.|. +.+.|.+
T Consensus        21 vvg~f~~~~~---~~~~~f~~~A~~~r~~~~F~~~~---~~~~~~~~~~--~~~~i~l~~~~~~~~~~y~g~~~~~~l~~   92 (97)
T cd02981          21 VVGFFKDEES---EEYKTFEKVAESLRDDYGFGHTS---DKEVAKKLKV--KPGSVVLFKPFEEEPVEYDGEFTEESLVE   92 (97)
T ss_pred             EEEEECCCCc---HHHHHHHHHHHhcccCCeEEEEC---hHHHHHHcCC--CCCceEEeCCcccCCccCCCCCCHHHHHH
Confidence            7888899887   45667888888886 48776655   4677888887  45899998653 333335565 7899999


Q ss_pred             HHHH
Q 031271          156 KTEK  159 (162)
Q Consensus       156 ~l~~  159 (162)
                      ||..
T Consensus        93 fi~~   96 (97)
T cd02981          93 FIKD   96 (97)
T ss_pred             HHHh
Confidence            9875

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai

>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol

Probab=97.59  E-value=0.00067  Score=49.11  Aligned_cols=91  Identities=23%  Similarity=0.153  Sum_probs=59.5

Q ss_pred             cccceeEEecC---CCeeeeeC----ceEEEEEe-cCCChhhhhh-hHHHHHHHHhcC--Cc-EEEEEECC---------
Q 031271           57 CINEMVLNIND---GGNVVFWV----LKVVIYYT-AAWCGPCKFI-EPYVKDFAAMYT--DV-QFIKIDVD---------  115 (162)
Q Consensus        57 ~~~~~~~~~~~---~~~~~~~~----k~vvv~F~-a~wC~~C~~~-~~~l~~~~~~~~--~v-~f~~vd~d---------  115 (162)
                      ..|+|.+.+.+   |+.+..++    ++++|+|| +.||+.|... .+.|.+..+++.  ++ .++.|..|         
T Consensus         4 ~aPdF~l~~~~~~~g~~v~L~~~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~~~~~~~~   83 (155)
T cd03013           4 KLPNVTLFEYVPGPPNPVNLSELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPFVMKAWG   83 (155)
T ss_pred             cCCCeEeeeeccCCCceeeHHHHhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCHHHHHHHH
Confidence            35777777764   77665433    55666555 7899999998 888988888774  46 57777664         


Q ss_pred             --------------CcHHHHHhcCCCCC-----------ccEEEEEcCCeEEEEEcCC
Q 031271          116 --------------WLPEAAKAFDLIDV-----------LPTFVLVKRGKEIDRVVGA  148 (162)
Q Consensus       116 --------------~~~~l~~~~~i~~~-----------~Ptiv~~~~Gk~i~~~~g~  148 (162)
                                    ...++++.||+ ..           ...++++.+|++...+...
T Consensus        84 ~~~~~~~~f~lLsD~~~~~~~~ygv-~~~~~~~~~~~~~~R~~fiId~g~I~~~~~~~  140 (155)
T cd03013          84 KALGAKDKIRFLADGNGEFTKALGL-TLDLSAAGGGIRSKRYALIVDDGKVKYLFVEE  140 (155)
T ss_pred             HhhCCCCcEEEEECCCHHHHHHcCC-CccccccCCcceeeeEEEEECCCEEEEEEEec
Confidence                          23467778886 31           1234445678777655433

The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases

>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1

Probab=97.58  E-value=0.0013  Score=50.78  Aligned_cols=100  Identities=19%  Similarity=0.241  Sum_probs=69.8

Q ss_pred             ccceeEEecCCCe------eeeeCceEEEEEecCCChhhhhhhHHHHHHHHhcCC-cEEEEEECC---------------
Q 031271           58 INEMVLNINDGGN------VVFWVLKVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVD---------------  115 (162)
Q Consensus        58 ~~~~~~~~~~~~~------~~~~~k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~-v~f~~vd~d---------------  115 (162)
                      -|+..+-..+|+.      +.+.++|.||+|.+-.||+=+.-.+.+++++++|++ +.|+.|=+.               
T Consensus        79 APns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl~VYI~EAHpsDgW~~~~~~~  158 (237)
T PF00837_consen   79 APNSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFLIVYIEEAHPSDGWAFGNNPY  158 (237)
T ss_pred             CCCCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhheehhhHhhhCcCCCccCCCCce
Confidence            3444444444443      466789999999999999999999999999999987 566655321               


Q ss_pred             ---C----------------------------cHHHHHhcCCCCCccE-EEEEcCCeEEEEEc-C---CCHHHHHHHHHH
Q 031271          116 ---W----------------------------LPEAAKAFDLIDVLPT-FVLVKRGKEIDRVV-G---AKKDELQMKTEK  159 (162)
Q Consensus       116 ---~----------------------------~~~l~~~~~i~~~~Pt-iv~~~~Gk~i~~~~-g---~~~~~l~~~l~~  159 (162)
                         +                            +......||   .+|. +.++++||++.+-. |   ++++++++||++
T Consensus       159 ~i~qh~sledR~~aA~~l~~~~~~~pi~vD~mdN~~~~~Yg---A~PeRlyIi~~gkv~Y~Gg~GP~~y~~~e~r~~L~~  235 (237)
T PF00837_consen  159 EIPQHRSLEDRLRAAKLLKEEFPQCPIVVDTMDNNFNKAYG---ALPERLYIIQDGKVVYKGGPGPFGYSPEELREWLEK  235 (237)
T ss_pred             eecCCCCHHHHHHHHHHHHhhCCCCCEEEEccCCHHHHHhC---CCcceEEEEECCEEEEeCCCCCCcCCHHHHHHHHHh
Confidence               0                            012344454   4774 66668999776432 2   379999999998


Q ss_pred             H
Q 031271          160 R  160 (162)
Q Consensus       160 ~  160 (162)
                      +
T Consensus       236 ~  236 (237)
T PF00837_consen  236 Y  236 (237)
T ss_pred             c
Confidence            5

97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process

>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]

Probab=97.56  E-value=0.00021  Score=62.23  Aligned_cols=79  Identities=16%  Similarity=0.297  Sum_probs=62.1

Q ss_pred             HHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhhhhhhH-HH--HHHHHhcC-Cc
Q 031271           32 RSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEP-YV--KDFAAMYT-DV  107 (162)
Q Consensus        32 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~~-~l--~~~~~~~~-~v  107 (162)
                      ++.++.|++.+|++                                 +|-...+||..|..|.. .+  +++++-+. ++
T Consensus        33 ~eAf~~A~~edkPI---------------------------------flSIGys~CHWChVM~~ESf~d~eiA~~lN~~F   79 (667)
T COG1331          33 EEAFAKAKEEDKPI---------------------------------LLSIGYSTCHWCHVMAHESFEDPEIAAILNENF   79 (667)
T ss_pred             HHHHHHHHHhCCCE---------------------------------EEEeccccccchHHHhhhcCCCHHHHHHHHhCc
Confidence            56788888889999                                 99999999999998865 33  56666553 48


Q ss_pred             EEEEEECCCcHHHHHhcC--------CCCCccEEEEE-cCCeEEEE
Q 031271          108 QFIKIDVDWLPEAAKAFD--------LIDVLPTFVLV-KRGKEIDR  144 (162)
Q Consensus       108 ~f~~vd~d~~~~l~~~~~--------i~~~~Ptiv~~-~~Gk~i~~  144 (162)
                      .-++||-++.|++.+.|.        - .++|-.||. ++|+++.-
T Consensus        80 V~IKVDREERPDvD~~Ym~~~q~~tG~-GGWPLtVfLTPd~kPFfa  124 (667)
T COG1331          80 VPVKVDREERPDVDSLYMNASQAITGQ-GGWPLTVFLTPDGKPFFA  124 (667)
T ss_pred             eeeeEChhhccCHHHHHHHHHHHhccC-CCCceeEEECCCCceeee
Confidence            888999999988777774        6 899965554 99998863

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=97.54  E-value=0.00079  Score=58.22  Aligned_cols=81  Identities=15%  Similarity=0.207  Sum_probs=64.9

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCCCccEEEEE-cCCeEE-EEEcCC-CHHHHHH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLV-KRGKEI-DRVVGA-KKDELQM  155 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~-~~Gk~i-~~~~g~-~~~~l~~  155 (162)
                      ++.|+.+.|..|..+...+++++..-+.+.+...|...+.+++.+|++ ...|++.++ .+|+.. -++.|. .-.+|..
T Consensus       370 l~~~~~~~~~~~~e~~~~l~e~~~~s~~i~~~~~~~~~~~~~~~~~~v-~~~P~~~i~~~~~~~~~i~f~g~P~G~Ef~s  448 (555)
T TIGR03143       370 LLLFLDGSNEKSAELQSFLGEFASLSEKLNSEAVNRGEEPESETLPKI-TKLPTVALLDDDGNYTGLKFHGVPSGHELNS  448 (555)
T ss_pred             EEEEECCCchhhHHHHHHHHHHHhcCCcEEEEEeccccchhhHhhcCC-CcCCEEEEEeCCCcccceEEEecCccHhHHH
Confidence            778888899999999999999997656688888899899999999999 999999998 465432 456666 5666666


Q ss_pred             HHHHH
Q 031271          156 KTEKR  160 (162)
Q Consensus       156 ~l~~~  160 (162)
                      +|...
T Consensus       449 ~i~~i  453 (555)
T TIGR03143       449 FILAL  453 (555)
T ss_pred             HHHHH
Confidence            66544

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK10824 glutaredoxin-4; Provisional

Probab=97.53  E-value=0.00044  Score=47.77  Aligned_cols=51  Identities=16%  Similarity=0.244  Sum_probs=36.0

Q ss_pred             CCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHHH----HHhcCCCCCccEEEEEcCCeEEE
Q 031271           85 AWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEA----AKAFDLIDVLPTFVLVKRGKEID  143 (162)
Q Consensus        85 ~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~l----~~~~~i~~~~Ptiv~~~~Gk~i~  143 (162)
                      ||||+|.++...|.++     ++.|..+|++.++++    .+.-|- ..+|.+++  +|+.+.
T Consensus        28 p~Cpyc~~ak~lL~~~-----~i~~~~idi~~d~~~~~~l~~~sg~-~TVPQIFI--~G~~IG   82 (115)
T PRK10824         28 PSCGFSAQAVQALSAC-----GERFAYVDILQNPDIRAELPKYANW-PTFPQLWV--DGELVG   82 (115)
T ss_pred             CCCchHHHHHHHHHHc-----CCCceEEEecCCHHHHHHHHHHhCC-CCCCeEEE--CCEEEc
Confidence            5999999999988876     345555677666543    334466 78887755  887773

>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=97.37  E-value=0.0016  Score=45.90  Aligned_cols=69  Identities=12%  Similarity=0.161  Sum_probs=55.0

Q ss_pred             hhhHHHHHHHHhcCC--cEEEEEECCCcHHHHHhcCCCCC--ccEEEEEcCCe-EEEEEcCC-CHHHHHHHHHHHh
Q 031271           92 FIEPYVKDFAAMYTD--VQFIKIDVDWLPEAAKAFDLIDV--LPTFVLVKRGK-EIDRVVGA-KKDELQMKTEKRR  161 (162)
Q Consensus        92 ~~~~~l~~~~~~~~~--v~f~~vd~d~~~~l~~~~~i~~~--~Ptiv~~~~Gk-~i~~~~g~-~~~~l~~~l~~~~  161 (162)
                      .....|.+++++|++  +.|+.+|.++...+.+.||+ ..  +|+++++...+ ....+.|. +.+.|.+|+++++
T Consensus        41 ~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~~~~~fgl-~~~~~P~v~i~~~~~~KY~~~~~~~t~e~i~~Fv~~~l  115 (130)
T cd02983          41 KYLEILKSVAEKFKKKPWGWLWTEAGAQLDLEEALNI-GGFGYPAMVAINFRKMKFATLKGSFSEDGINEFLRELS  115 (130)
T ss_pred             HHHHHHHHHHHHhcCCcEEEEEEeCcccHHHHHHcCC-CccCCCEEEEEecccCccccccCccCHHHHHHHHHHHH
Confidence            567788999999975  89999999999899999998 54  99999884332 22214455 8999999999875

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.

>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI

Probab=97.28  E-value=0.0025  Score=43.66  Aligned_cols=72  Identities=18%  Similarity=0.194  Sum_probs=54.8

Q ss_pred             hhhhhhhHHHHHHHHhcC-C-cEEEEEECCCcHHHHHhcCCCCC----ccEEEEEc-CCeEEEEEcCC-CHHHHHHHHHH
Q 031271           88 GPCKFIEPYVKDFAAMYT-D-VQFIKIDVDWLPEAAKAFDLIDV----LPTFVLVK-RGKEIDRVVGA-KKDELQMKTEK  159 (162)
Q Consensus        88 ~~C~~~~~~l~~~~~~~~-~-v~f~~vd~d~~~~l~~~~~i~~~----~Ptiv~~~-~Gk~i~~~~g~-~~~~l~~~l~~  159 (162)
                      ..-....+.+.++++.|+ + +.|+.+|.++.....+.||+ ..    +|.+++.. +++....-... +.+.|.+++++
T Consensus        31 ~~~~~~~~~~~~vAk~fk~gki~Fv~~D~~~~~~~l~~fgl-~~~~~~~P~~~i~~~~~~KY~~~~~~~t~e~i~~F~~~  109 (111)
T cd03073          31 KGTNYWRNRVLKVAKDFPDRKLNFAVADKEDFSHELEEFGL-DFSGGEKPVVAIRTAKGKKYVMEEEFSDVDALEEFLED  109 (111)
T ss_pred             hHHHHHHHHHHHHHHHCcCCeEEEEEEcHHHHHHHHHHcCC-CcccCCCCEEEEEeCCCCccCCCcccCCHHHHHHHHHH
Confidence            334567888999999999 5 99999999988778999999 64    99998884 44222111234 78999999987


Q ss_pred             H
Q 031271          160 R  160 (162)
Q Consensus       160 ~  160 (162)
                      +
T Consensus       110 f  110 (111)
T cd03073         110 F  110 (111)
T ss_pred             h
Confidence            5

They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei

>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=97.22  E-value=0.0032  Score=43.06  Aligned_cols=81  Identities=10%  Similarity=0.096  Sum_probs=59.8

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHh---cCC-cEEEEEECCCcHHHHHhcCCCCC--ccEEEEEcC-C-eEEEEEcCC-C
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAM---YTD-VQFIKIDVDWLPEAAKAFDLIDV--LPTFVLVKR-G-KEIDRVVGA-K  149 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~---~~~-v~f~~vd~d~~~~l~~~~~i~~~--~Ptiv~~~~-G-k~i~~~~g~-~  149 (162)
                      .+.|+.+  ..-....+.+.+++++   +++ +.|+.+|.+......+.||+ ..  +|.+.+... + +......+. +
T Consensus        20 ~~l~f~~--~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~~~~~~~fgl-~~~~~P~i~i~~~~~~~Ky~~~~~~~t   96 (111)
T cd03072          20 LILFHDK--DDLESLKEFKQAVARQLISEKGAINFLTADGDKFRHPLLHLGK-TPADLPVIAIDSFRHMYLFPDFEDVYV   96 (111)
T ss_pred             EEEEecc--hHHHHHHHHHHHHHHHHHhcCceEEEEEEechHhhhHHHHcCC-CHhHCCEEEEEcchhcCcCCCCccccC
Confidence            4455522  2336678889999999   987 99999999988779999999 76  899988743 2 222113344 8


Q ss_pred             HHHHHHHHHHHhC
Q 031271          150 KDELQMKTEKRRN  162 (162)
Q Consensus       150 ~~~l~~~l~~~~~  162 (162)
                      ++.|.++++++.+
T Consensus        97 ~~~i~~Fv~~~~~  109 (111)
T cd03072          97 PGKLKQFVLDLHS  109 (111)
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999998753

It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.

>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins

Probab=97.20  E-value=0.0018  Score=41.74  Aligned_cols=57  Identities=19%  Similarity=0.295  Sum_probs=41.6

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCC-cEEEEEE--CCCc------------------------------HHHHHhcC
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKID--VDWL------------------------------PEAAKAFD  125 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~-v~f~~vd--~d~~------------------------------~~l~~~~~  125 (162)
                      +..|+.+.|++|..+.+.++++....++ +.+....  ....                              ...+..+|
T Consensus         1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g   80 (98)
T cd02972           1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARALG   80 (98)
T ss_pred             CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcC
Confidence            3679999999999999999998755544 4444443  2221                              23567889


Q ss_pred             CCCCccEEEEE
Q 031271          126 LIDVLPTFVLV  136 (162)
Q Consensus       126 i~~~~Ptiv~~  136 (162)
                      + .++|++++.
T Consensus        81 ~-~g~Pt~v~~   90 (98)
T cd02972          81 V-TGTPTFVVN   90 (98)
T ss_pred             C-CCCCEEEEC
Confidence            9 999999874

Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.

>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional

Probab=97.16  E-value=0.0016  Score=54.38  Aligned_cols=56  Identities=21%  Similarity=0.353  Sum_probs=43.2

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHHHH---Hh---------cCCCCCccEEEEEcCCeEE
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAA---KA---------FDLIDVLPTFVLVKRGKEI  142 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~l~---~~---------~~i~~~~Ptiv~~~~Gk~i  142 (162)
                      |+.|+.+|||+|.++...|.+.     ++.|-.+|+++.+...   ++         .|. ..+|++++  +|+.+
T Consensus         4 V~vys~~~Cp~C~~aK~~L~~~-----gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~-~tvP~ifi--~~~~i   71 (410)
T PRK12759          4 VRIYTKTNCPFCDLAKSWFGAN-----DIPFTQISLDDDVKRAEFYAEVNKNILLVEEHI-RTVPQIFV--GDVHI   71 (410)
T ss_pred             EEEEeCCCCHHHHHHHHHHHHC-----CCCeEEEECCCChhHHHHHHHHhhccccccCCC-CccCeEEE--CCEEE
Confidence            6779999999999999888874     7888889998776322   22         477 89999866  67644

>PTZ00062 glutaredoxin; Provisional

Probab=97.12  E-value=0.0041  Score=47.17  Aligned_cols=50  Identities=12%  Similarity=0.209  Sum_probs=36.8

Q ss_pred             CCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHHHH----HhcCCCCCccEEEEEcCCeEE
Q 031271           85 AWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAA----KAFDLIDVLPTFVLVKRGKEI  142 (162)
Q Consensus        85 ~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~l~----~~~~i~~~~Ptiv~~~~Gk~i  142 (162)
                      |||++|+++...|.+.     ++.|..+|+++.+++.    +..|. ..+|.+.+  +|+.+
T Consensus       126 p~C~~C~~~k~~L~~~-----~i~y~~~DI~~d~~~~~~l~~~sg~-~TvPqVfI--~G~~I  179 (204)
T PTZ00062        126 PFCRFSNAVVNMLNSS-----GVKYETYNIFEDPDLREELKVYSNW-PTYPQLYV--NGELI  179 (204)
T ss_pred             CCChhHHHHHHHHHHc-----CCCEEEEEcCCCHHHHHHHHHHhCC-CCCCeEEE--CCEEE
Confidence            7999999998888864     5777788888766543    33466 67787754  78766

>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]

Probab=97.05  E-value=0.0034  Score=42.57  Aligned_cols=58  Identities=21%  Similarity=0.338  Sum_probs=40.3

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcH-H----HHHhcCCCCCccEEEEEcCCeEE
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLP-E----AAKAFDLIDVLPTFVLVKRGKEI  142 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~-~----l~~~~~i~~~~Ptiv~~~~Gk~i  142 (162)
                      +|.|.-+||++|+++...|.++   -....++.+|.+.+. +    +.+.-+. +.+|.+++  +|+.+
T Consensus        16 VVifSKs~C~~c~~~k~ll~~~---~v~~~vvELD~~~~g~eiq~~l~~~tg~-~tvP~vFI--~Gk~i   78 (104)
T KOG1752|consen   16 VVIFSKSSCPYCHRAKELLSDL---GVNPKVVELDEDEDGSEIQKALKKLTGQ-RTVPNVFI--GGKFI   78 (104)
T ss_pred             EEEEECCcCchHHHHHHHHHhC---CCCCEEEEccCCCCcHHHHHHHHHhcCC-CCCCEEEE--CCEEE
Confidence            4669999999999988777771   123667777766443 3    3333456 78998765  88877

>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]

Probab=96.93  E-value=0.033  Score=42.30  Aligned_cols=104  Identities=20%  Similarity=0.253  Sum_probs=72.6

Q ss_pred             cccceeEEecCCCeeeeeC---ceEEEEEecCCCh-hhhhhhHHHHHHHHhcC-----CcEEEEEECCC-----------
Q 031271           57 CINEMVLNINDGGNVVFWV---LKVVIYYTAAWCG-PCKFIEPYVKDFAAMYT-----DVQFIKIDVDW-----------  116 (162)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~---k~vvv~F~a~wC~-~C~~~~~~l~~~~~~~~-----~v~f~~vd~d~-----------  116 (162)
                      ....+.+.+.+|+.+...+   ++++|+|.-+.|+ -|-.+...+.++.++..     ++.++.|.+|.           
T Consensus        46 ~~g~f~l~d~~G~~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y  125 (207)
T COG1999          46 IGGDFELTDQDGKPFTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKY  125 (207)
T ss_pred             cCCceeeecCCCCEeeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHH
Confidence            3347999999999887655   9999999988886 68888888877777664     24444444431           


Q ss_pred             ------------------cHHHHHhcCCCCC--c-------------cEEEEE-cCCeEEEEEcCC-CHHHHHHHHHHHh
Q 031271          117 ------------------LPEAAKAFDLIDV--L-------------PTFVLV-KRGKEIDRVVGA-KKDELQMKTEKRR  161 (162)
Q Consensus       117 ------------------~~~l~~~~~i~~~--~-------------Ptiv~~-~~Gk~i~~~~g~-~~~~l~~~l~~~~  161 (162)
                                        ..++++.|++ ..  +             ..++++ ++|+.+..+.+. .++.+.+.|+..+
T Consensus       126 ~~~~~~~~~~~ltg~~~~~~~~~k~~~V-~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~~~~~~~~~~i~~~l~~l~  204 (207)
T COG1999         126 AELNFDPRWIGLTGTPEQIEEVAKAYGV-FYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGTYDYGEPPEEIAADLKKLL  204 (207)
T ss_pred             hcccCCCCeeeeeCCHHHHHHHHHHhcc-eeeecccCCCCCceeeeeeEEEEECCCCeEEEEecCCCChHHHHHHHHHHh
Confidence                              1245666666 31  1             123334 699999888776 7899999888765

>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]

Probab=96.70  E-value=0.023  Score=41.09  Aligned_cols=103  Identities=17%  Similarity=0.201  Sum_probs=69.3

Q ss_pred             cceeEEecCCCeeeeeC---ceEEEEEecCCChhhhhhhHHHHHHHHhcCC--cEEEEEECCC--------cHH---HH-
Q 031271           59 NEMVLNINDGGNVVFWV---LKVVIYYTAAWCGPCKFIEPYVKDFAAMYTD--VQFIKIDVDW--------LPE---AA-  121 (162)
Q Consensus        59 ~~~~~~~~~~~~~~~~~---k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~--v~f~~vd~d~--------~~~---l~-  121 (162)
                      =++++.+.+|+.+..++   |+++|.=.|+-|+.--+ ...|+.+.++|.+  +.++.+-+.+        +.+   +| 
T Consensus         6 yd~~~~~~~G~~~~l~~~~GkVlLIVNtASkCGfTpQ-YegLe~Ly~ky~~~Gf~VLgFPcNQF~~QEPg~~eEI~~fC~   84 (162)
T COG0386           6 YDFSVKDIDGEPVSLSDYKGKVLLIVNTASKCGFTPQ-YEGLEALYKKYKDKGFEVLGFPCNQFGGQEPGSDEEIAKFCQ   84 (162)
T ss_pred             ccceeeccCCCCccHHHhCCcEEEEEEcccccCCcHh-HHHHHHHHHHHhhCCcEEEeccccccccCCCCCHHHHHHHHH
Confidence            35778888888886655   88888888999998764 4567777777754  6665554421        111   11 


Q ss_pred             HhcCC-----------------------------------CCCccEEEEEcCCeEEEEEcCC-CHHHHHHHHHHHhC
Q 031271          122 KAFDL-----------------------------------IDVLPTFVLVKRGKEIDRVVGA-KKDELQMKTEKRRN  162 (162)
Q Consensus       122 ~~~~i-----------------------------------~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~~l~~~~~  162 (162)
                      ..||+                                   .-.+-.+++-++|+++.|+... .|+++...|++.++
T Consensus        85 ~~YgVtFp~f~Ki~VnG~~a~PLy~~L~~~~~g~~~~~~IkWNFtKFLvdr~G~VV~Rf~p~t~P~d~~~~Ie~lL~  161 (162)
T COG0386          85 LNYGVTFPMFSKIDVNGKNAHPLYKYLKEQKPGKLGGKDIKWNFTKFLVDRDGNVVKRFSPKTKPEDIELAIEKLLA  161 (162)
T ss_pred             hccCceeeeeeEEeecCCCCCcHHHHHHhcCCCCccCCccceeeEEEEEcCCCcEEEeeCCCCChhhHHHHHHHHhc
Confidence            23333                                   0112246666899999999888 79999999888763

>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]

Probab=96.48  E-value=0.018  Score=40.09  Aligned_cols=83  Identities=19%  Similarity=0.179  Sum_probs=53.0

Q ss_pred             ceEEEEEecCCChhhhhhhHHHHHHH-Hhc---CCcEEEEEECC-----CcHHHHHhcCCCC-CccEEEEEc-CCeEEEE
Q 031271           76 LKVVIYYTAAWCGPCKFIEPYVKDFA-AMY---TDVQFIKIDVD-----WLPEAAKAFDLID-VLPTFVLVK-RGKEIDR  144 (162)
Q Consensus        76 k~vvv~F~a~wC~~C~~~~~~l~~~~-~~~---~~v~f~~vd~d-----~~~~l~~~~~i~~-~~Ptiv~~~-~Gk~i~~  144 (162)
                      +.++|.|=..  -|--.-...+.+++ +..   +++.+..|.+.     .|.+|+++|++.. .+|.+.+|. +....-+
T Consensus        22 ~~~LVKFD~a--yPyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~ke~fPv~~LF~~~~~~pv~   99 (126)
T PF07912_consen   22 KYVLVKFDVA--YPYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDKEDFPVIYLFVGDKEEPVR   99 (126)
T ss_dssp             SEEEEEEEES--S--CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SCCC-SEEEEEESSTTSEEE
T ss_pred             ceEEEEEecc--CCCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCcccCCEEEEecCCCCCCcc
Confidence            4458888443  33333455666666 332   45888888774     6789999999832 479999986 4444444


Q ss_pred             E--cCC-CHHHHHHHHHHH
Q 031271          145 V--VGA-KKDELQMKTEKR  160 (162)
Q Consensus       145 ~--~g~-~~~~l~~~l~~~  160 (162)
                      +  .|. +.+.|+.|++++
T Consensus       100 ~p~~~~~t~~~l~~fvk~~  118 (126)
T PF07912_consen  100 YPFDGDVTADNLQRFVKSN  118 (126)
T ss_dssp             E-TCS-S-HHHHHHHHHHT
T ss_pred             CCccCCccHHHHHHHHHhC
Confidence            4  454 899999999986

The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.

>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems

Probab=96.43  E-value=0.015  Score=42.93  Aligned_cols=62  Identities=23%  Similarity=0.341  Sum_probs=45.7

Q ss_pred             eeccccceeEEecCCCeeeee---CceEEEEEecCCC-hhhhhhhHHHHHHHHhc----CCcEEEEEECC
Q 031271           54 LIYCINEMVLNINDGGNVVFW---VLKVVIYYTAAWC-GPCKFIEPYVKDFAAMY----TDVQFIKIDVD  115 (162)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~---~k~vvv~F~a~wC-~~C~~~~~~l~~~~~~~----~~v~f~~vd~d  115 (162)
                      .....+++.+.+.+|+.+...   .|+++|+|.-+.| ..|-.+...+.++.+.+    .++.++.|.+|
T Consensus        28 ~~~~~~~f~L~d~~G~~~~~~~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvD   97 (174)
T PF02630_consen   28 NPRIVPDFTLTDQDGKTVTLDDLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVD   97 (174)
T ss_dssp             TSCSSST-EEEETTSSEEEGGGGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESS
T ss_pred             CCccCCCcEEEcCCCCEecHHHhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeC
Confidence            334578899999999999776   4999999999999 47887777776666544    24777777776

In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....

>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A

Probab=96.41  E-value=0.038  Score=40.17  Aligned_cols=65  Identities=22%  Similarity=0.137  Sum_probs=49.6

Q ss_pred             hhhHHHHHHHHhcCC-cEEEEEECCCcHHHHHhcCCCCCccEEEEEcCC-eEEEEEcC--CCHHHHHHHHHHHh
Q 031271           92 FIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRG-KEIDRVVG--AKKDELQMKTEKRR  161 (162)
Q Consensus        92 ~~~~~l~~~~~~~~~-v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~G-k~i~~~~g--~~~~~l~~~l~~~~  161 (162)
                      .....+.++++.+.+ +.|+.+.   ++++++.+++ .. |++++|+++ +....+.|  .+.+.|.+||..+.
T Consensus         7 ~~~~~f~~~A~~~~~~~~F~~~~---~~~~~~~~~~-~~-p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~~   75 (184)
T PF13848_consen    7 ELFEIFEEAAEKLKGDYQFGVTF---NEELAKKYGI-KE-PTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKNS   75 (184)
T ss_dssp             HHHHHHHHHHHHHTTTSEEEEEE----HHHHHHCTC-SS-SEEEEEECTTTSEEEESSSTTSHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHhCcCCcEEEEEc---HHHHHHHhCC-CC-CcEEEeccCCCCceecccccCCHHHHHHHHHHhc
Confidence            345678889998884 8888877   6778999999 77 999999763 33344555  48999999998763

...

>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=96.36  E-value=0.034  Score=42.75  Aligned_cols=34  Identities=21%  Similarity=0.141  Sum_probs=26.0

Q ss_pred             ceEEEEEecCCChhhhhhhHHHHHHHHhcCCcEE
Q 031271           76 LKVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQF  109 (162)
Q Consensus        76 k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f  109 (162)
                      +.+++.|....|++|+...+.+++.....+++.+
T Consensus        85 ~v~v~~f~d~~Cp~C~~~~~~l~~~~i~~~~~~~  118 (244)
T COG1651          85 PVTVVEFFDYTCPYCKEAFPELKKKYIDDGKVRL  118 (244)
T ss_pred             CceEEEEecCcCccHHHHHHHHHHHhhhcCCCce
Confidence            5668889999999998888888776665555433

>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]

Probab=96.33  E-value=0.074  Score=39.09  Aligned_cols=101  Identities=18%  Similarity=0.228  Sum_probs=62.4

Q ss_pred             ccccCCceeeeccccceeEEecCCCeeeeeC----ceEEEEEe----cCCCh--hhhhhhHHHHHHHHhcCCcEEEEEEC
Q 031271           45 VMTNETGFCLIYCINEMVLNINDGGNVVFWV----LKVVIYYT----AAWCG--PCKFIEPYVKDFAAMYTDVQFIKIDV  114 (162)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----k~vvv~F~----a~wC~--~C~~~~~~l~~~~~~~~~v~f~~vd~  114 (162)
                      ++.+.+...+....|+++|.+.||+.+...+    ++||++||    +|.|.  .| .++..++++.+.+  ..++.+..
T Consensus        56 ~Ssds~~v~~Gd~iPD~tL~dedg~sisLkkit~nk~vV~f~YP~asTPGCTkQaC-gFRDnY~k~kka~--aeV~GlS~  132 (211)
T KOG0855|consen   56 VSSDSLKVNKGDAIPDFTLKDEDGKSISLKKITGNKPVVLFFYPAASTPGCTKQAC-GFRDNYEKFKKAG--AEVIGLSG  132 (211)
T ss_pred             ccccceeeecCCcCCCcccccCCCCeeeeeeecCCCcEEEEEeccCCCCCcccccc-cccccHHHHhhcC--ceEEeecc
Confidence            3444455566667899999999999886644    79999998    34552  23 3466777776644  55555554


Q ss_pred             C---------------------CcHHHHHhcCCCCCcc--------EEEEEcCC-eEEEEEcCCC
Q 031271          115 D---------------------WLPEAAKAFDLIDVLP--------TFVLVKRG-KEIDRVVGAK  149 (162)
Q Consensus       115 d---------------------~~~~l~~~~~i~~~~P--------tiv~~~~G-k~i~~~~g~~  149 (162)
                      |                     .-.++...+|. ...|        +++|.++| +.+.+-..++
T Consensus       133 D~s~sqKaF~sKqnlPYhLLSDpk~e~ik~lGa-~k~p~gg~~~Rsh~if~kg~~k~~ik~~~is  196 (211)
T KOG0855|consen  133 DDSASQKAFASKQNLPYHLLSDPKNEVIKDLGA-PKDPFGGLPGRSHYIFDKGGVKQLIKNNQIS  196 (211)
T ss_pred             CchHHHHHhhhhccCCeeeecCcchhHHHHhCC-CCCCCCCcccceEEEEecCCeEEEEEecccC
Confidence            4                     22366777776 5544        45555554 4444444443

>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=96.28  E-value=0.084  Score=35.21  Aligned_cols=75  Identities=15%  Similarity=0.109  Sum_probs=49.3

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhc-CCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcC-CeEEEEE-cCC-CHHHHH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMY-TDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKR-GKEIDRV-VGA-KKDELQ  154 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~-~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~-Gk~i~~~-~g~-~~~~l~  154 (162)
                      +|-|+..--.   .....+.+++..+ .+..|..   ....++...+++  ..|.++++++ ......+ .|. +.+.|.
T Consensus        23 Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~---~~~~~~~~~~~~--~~~~i~l~~~~~e~~~~y~~g~~~~~~l~   94 (102)
T cd03066          23 LIGYFKSEDS---EHYKAFEEAAEEFHPYIKFFA---TFDSKVAKKLGL--KMNEVDFYEPFMEEPVTIPDKPYSEEELV   94 (102)
T ss_pred             EEEEECCCCC---HHHHHHHHHHHhhhcCCEEEE---ECcHHHHHHcCC--CCCcEEEeCCCCCCCcccCCCCCCHHHHH
Confidence            4555554333   3455678888888 4577744   444567788887  5799999954 3333334 555 899999


Q ss_pred             HHHHHHh
Q 031271          155 MKTEKRR  161 (162)
Q Consensus       155 ~~l~~~~  161 (162)
                      +||..+.
T Consensus        95 ~fi~~~~  101 (102)
T cd03066          95 DFVEEHK  101 (102)
T ss_pred             HHHHHhc
Confidence            9998753

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca

>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain

Probab=96.17  E-value=0.21  Score=35.51  Aligned_cols=96  Identities=14%  Similarity=0.274  Sum_probs=66.0

Q ss_pred             hHHHHHHhh----hcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCCh----hhhhh--hHHHHH
Q 031271           30 QWRSQYEAS----KQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCG----PCKFI--EPYVKD   99 (162)
Q Consensus        30 ~~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~----~C~~~--~~~l~~   99 (162)
                      .+++++..|    ++..|++                                 +|+.+++...    .|+..  .+.+.+
T Consensus         5 s~~~Al~~A~~~~~~e~K~L---------------------------------~VYLH~~~~~~t~~Fc~~~L~se~Vi~   51 (136)
T cd02990           5 SLEAAFQEACYRKARDRKLL---------------------------------AIYLHHDESVLSNVFCSQLLCAESIVQ   51 (136)
T ss_pred             cHHHHHHHHhhhhhhhcceE---------------------------------EEEEcCCCCccHHHHHHHHhcCHHHHH
Confidence            467778877    7778888                                 9999998764    45543  222233


Q ss_pred             HHHhcCCcEEEEEECCCcH------------------HHHHhcCCCCCccEEEEE-cC-C--eEEEEEcCC-CHHHHHHH
Q 031271          100 FAAMYTDVQFIKIDVDWLP------------------EAAKAFDLIDVLPTFVLV-KR-G--KEIDRVVGA-KKDELQMK  156 (162)
Q Consensus       100 ~~~~~~~v~f~~vd~d~~~------------------~l~~~~~i~~~~Ptiv~~-~~-G--k~i~~~~g~-~~~~l~~~  156 (162)
                      +.+  .++.+..-|++...                  ..++.++. ..+|.+.++ +. +  .++.++.|. ++++|...
T Consensus        52 fl~--~nfv~Wg~dvt~~~~~~~fl~~~~~~~g~~a~~~~~~~~~-~~fP~~avI~~~~~~~~vl~~i~G~~~~~ell~~  128 (136)
T cd02990          52 YLS--QNFITWGWDMTKESNKARFLSSCTRHFGSVAAQTIRNIKT-DQLPAILIIMGKRSSNEVLNVIQGNTGVDELLMR  128 (136)
T ss_pred             HHH--cCEEEEeeeccchhhhhHHHHhhhhhhhHHHHHHHHhcCc-CCCCeEEEEEecCCceEEEEEEECCCCHHHHHHH
Confidence            322  24777777876531                  24566788 999987777 32 2  678899999 89999988


Q ss_pred             HHHHh
Q 031271          157 TEKRR  161 (162)
Q Consensus       157 l~~~~  161 (162)
                      |.+..
T Consensus       129 L~~~v  133 (136)
T cd02990         129 LIEAM  133 (136)
T ss_pred             HHHHH
Confidence            87654

FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear

>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]

Probab=96.13  E-value=0.049  Score=42.58  Aligned_cols=104  Identities=19%  Similarity=0.209  Sum_probs=70.8

Q ss_pred             cccceeEEecCCCeeeeeC---ceEEEEEecCCChh-hhhhhHHHHHHHHhc---CCc----EEEEEECCC---------
Q 031271           57 CINEMVLNINDGGNVVFWV---LKVVIYYTAAWCGP-CKFIEPYVKDFAAMY---TDV----QFIKIDVDW---------  116 (162)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~---k~vvv~F~a~wC~~-C~~~~~~l~~~~~~~---~~v----~f~~vd~d~---------  116 (162)
                      ..-+|+|.+.+|+.+..++   |=++++|.-+.||. |-.....+.++.++.   +++    .|+.||-..         
T Consensus       118 iGGpF~L~d~~Gk~~te~df~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY  197 (280)
T KOG2792|consen  118 IGGPFSLVDHDGKRVTEKDFLGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEY  197 (280)
T ss_pred             cCCceEEEecCCCeecccccccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHH
Confidence            3467999999999998887   88899999999984 766555554444433   232    566666632         


Q ss_pred             -----------------cHHHHHhcCCCCCc--c-----------EEEEE---cCCeEEEEEcCC-CHHHHHHHHHHHh
Q 031271          117 -----------------LPEAAKAFDLIDVL--P-----------TFVLV---KRGKEIDRVVGA-KKDELQMKTEKRR  161 (162)
Q Consensus       117 -----------------~~~l~~~~~i~~~~--P-----------tiv~~---~~Gk~i~~~~g~-~~~~l~~~l~~~~  161 (162)
                                       -..+|+.|.| -.-  |           ++++|   ++|+.++.+... +++++.+.|.++.
T Consensus       198 ~~eF~pkllGLTGT~eqvk~vak~yRV-Yfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~GrN~~~~~~~~~I~~~v  275 (280)
T KOG2792|consen  198 VSEFHPKLLGLTGTTEQVKQVAKKYRV-YFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYGRNYDADELADSILKHV  275 (280)
T ss_pred             HHhcChhhhcccCCHHHHHHHHHHhEE-eeccCCCCCCCCeeeeeeEEEEEECCCcceehhhcccCCHHHHHHHHHHHH
Confidence                             1245666655 110  1           35555   789999877655 8999988887764

>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs

Probab=95.85  E-value=0.058  Score=38.83  Aligned_cols=58  Identities=21%  Similarity=0.353  Sum_probs=39.8

Q ss_pred             EEEEecC------CChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHHH----HHhcCC---CCCccEEEEEcCCeEEE
Q 031271           79 VIYYTAA------WCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEA----AKAFDL---IDVLPTFVLVKRGKEID  143 (162)
Q Consensus        79 vv~F~a~------wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~l----~~~~~i---~~~~Ptiv~~~~Gk~i~  143 (162)
                      |+.|+++      +|++|.++...|+.+     ++.|-.+|++..+++    .+.++.   ...+|.+++  +|+.+.
T Consensus         2 VvlYttsl~giR~t~~~C~~ak~iL~~~-----~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI--~G~~IG   72 (147)
T cd03031           2 VVLYTTSLRGVRKTFEDCNNVRAILESF-----RVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFV--DGRYLG   72 (147)
T ss_pred             EEEEEcCCcCCCCcChhHHHHHHHHHHC-----CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEE--CCEEEe
Confidence            3445666      999999999888775     688888999876543    344331   147787754  776653

This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.

>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=95.85  E-value=0.033  Score=35.36  Aligned_cols=57  Identities=18%  Similarity=0.335  Sum_probs=38.7

Q ss_pred             EEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECC--------------CcHHH--HHhcCCCCCccEEEEEcCCeEEE
Q 031271           80 IYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVD--------------WLPEA--AKAFDLIDVLPTFVLVKRGKEID  143 (162)
Q Consensus        80 v~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d--------------~~~~l--~~~~~i~~~~Ptiv~~~~Gk~i~  143 (162)
                      +.|++..||.|.....+|+++.     +.+=.|+++              +.+++  .+.+|- -++|.+++ .+|+++.
T Consensus         5 ~lfgsn~Cpdca~a~eyl~rl~-----v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gy-iGIPall~-~d~~vVl   77 (85)
T COG4545           5 KLFGSNLCPDCAPAVEYLERLN-----VDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGY-IGIPALLT-DDGKVVL   77 (85)
T ss_pred             eeeccccCcchHHHHHHHHHcC-----CCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCc-ccceEEEe-CCCcEEE
Confidence            5699999999999888887763     333333332              33333  456777 79999876 6776664

>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []

Probab=95.83  E-value=0.16  Score=37.19  Aligned_cols=34  Identities=18%  Similarity=0.504  Sum_probs=28.4

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCC--cEEEEE
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTD--VQFIKI  112 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~--v~f~~v  112 (162)
                      |.+|+..-||+|-...+.+.++.+.+++  +.+..+
T Consensus         2 i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~   37 (193)
T PF01323_consen    2 IEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPF   37 (193)
T ss_dssp             EEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEecc
Confidence            7889999999999999999999999966  444444

The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....

>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C

Probab=95.57  E-value=0.045  Score=40.40  Aligned_cols=26  Identities=19%  Similarity=0.477  Sum_probs=21.8

Q ss_pred             EEecCCChhhhhhhHHHHHHHHhcCC
Q 031271           81 YYTAAWCGPCKFIEPYVKDFAAMYTD  106 (162)
Q Consensus        81 ~F~a~wC~~C~~~~~~l~~~~~~~~~  106 (162)
                      +|..|.|+.|-...|.+.++..+|++
T Consensus         2 ~F~dPlc~~C~~~E~~l~kl~~~~~~   27 (176)
T PF13743_consen    2 LFVDPLCSWCWGFEPELRKLKEEYGN   27 (176)
T ss_dssp             EEE-TT-HHHHHHHHHHHHHHHHS-T
T ss_pred             eeeCCCChHHHHhHHHHHHHHHHcCC
Confidence            58999999999999999999999986

>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx

Probab=95.47  E-value=0.011  Score=39.83  Aligned_cols=75  Identities=13%  Similarity=0.099  Sum_probs=44.8

Q ss_pred             EEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCc----HHHHHhcCCCCCccEEEEE-cCCeEEEE-----EcCCC
Q 031271           80 IYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWL----PEAAKAFDLIDVLPTFVLV-KRGKEIDR-----VVGAK  149 (162)
Q Consensus        80 v~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~----~~l~~~~~i~~~~Ptiv~~-~~Gk~i~~-----~~g~~  149 (162)
                      ..|+.++|+.|++....|++.     ++.|-.+|+.+.    .++.+.++. .+.+.--++ ++|.....     ..+.+
T Consensus         2 ~iY~~~~C~~c~ka~~~L~~~-----~i~~~~idi~~~~~~~~~l~~~~~~-~~~~~~~li~~~~~~~~~l~~~~~~~ls   75 (105)
T cd02977           2 TIYGNPNCSTSRKALAWLEEH-----GIEYEFIDYLKEPPTKEELKELLAK-LGLGVEDLFNTRGTPYRKLGLADKDELS   75 (105)
T ss_pred             EEEECCCCHHHHHHHHHHHHc-----CCCcEEEeeccCCCCHHHHHHHHHh-cCCCHHHHHhcCCchHHHcCCccccCCC
Confidence            468899999999998888773     666667776542    344444444 443322222 34433221     22446


Q ss_pred             HHHHHHHHHHH
Q 031271          150 KDELQMKTEKR  160 (162)
Q Consensus       150 ~~~l~~~l~~~  160 (162)
                      .+++.++|.++
T Consensus        76 ~~e~~~~l~~~   86 (105)
T cd02977          76 DEEALELMAEH   86 (105)
T ss_pred             HHHHHHHHHhC
Confidence            78888877654

ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.

>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]

Probab=95.28  E-value=0.13  Score=37.69  Aligned_cols=105  Identities=17%  Similarity=0.193  Sum_probs=71.0

Q ss_pred             cccceeEEecCCCeeeeeC---ceEEEEEecCCChhhhhhhHHHHHHHHhcCC--cEEEEEECC--------CcHH----
Q 031271           57 CINEMVLNINDGGNVVFWV---LKVVIYYTAAWCGPCKFIEPYVKDFAAMYTD--VQFIKIDVD--------WLPE----  119 (162)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~---k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~--v~f~~vd~d--------~~~~----  119 (162)
                      +.=+++..+.+|+.+..+.   |++++.=-|+.|+.-......|..+.++|.+  +.++..-+.        .+.+    
T Consensus        13 siydf~~~d~~G~~v~l~~yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~Gl~ILaFPCNQFg~QEp~~n~Ei~~f   92 (171)
T KOG1651|consen   13 SIYDFSAKDLDGEYVSLSQYRGKVVLIVNVASQCGLTESQYTELNELYEKYKDQGLEILAFPCNQFGNQEPGSNEEILNF   92 (171)
T ss_pred             ceeeeEEecCCCCCccHHHhCCeEEEEEEcccccccchhcchhHHHHHHHHhhCCeEEEEeccccccCcCCCCcHHHHHH
Confidence            4456899999999887655   7777777799999988777788888888853  666555442        1111    


Q ss_pred             HHHhcCC----------------------------------CCCccEEEEEcCCeEEEEEcCC-CHHHHHHHHHHHh
Q 031271          120 AAKAFDL----------------------------------IDVLPTFVLVKRGKEIDRVVGA-KKDELQMKTEKRR  161 (162)
Q Consensus       120 l~~~~~i----------------------------------~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~~l~~~~  161 (162)
                      +..+|+.                                  .-.+-.|++-++|+++.|+... ++..++.-|++++
T Consensus        93 ~~~r~~~~f~if~KidVNG~~~~PlykfLK~~~~~~lg~~IkWNF~KFLVd~~G~vv~Ry~ptt~p~~~~~dIe~lL  169 (171)
T KOG1651|consen   93 VKVRYGAEFPIFQKIDVNGDNADPLYKFLKKVKGGPLGDDIKWNFTKFLVDKDGHVVKRFSPTTSPLDIEKDIEKLL  169 (171)
T ss_pred             HHhccCCCCccEeEEecCCCCCchHHHHHhhcCCCcccccceeeeEEEeECCCCcEEEeeCCCCCccccchhHHHHh
Confidence            2233332                                  0122246666999999999877 6777777777664

>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins

Probab=95.02  E-value=0.36  Score=30.23  Aligned_cols=70  Identities=10%  Similarity=0.086  Sum_probs=43.0

Q ss_pred             EEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCC----cHHHHHhcCCCCCccEEEEEcCCeEEEEEcCCCHHHHHH
Q 031271           80 IYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDW----LPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQM  155 (162)
Q Consensus        80 v~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~----~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~~~~~l~~  155 (162)
                      ..|+.++|++|.+..-.|++.     ++.|-.++++.    .+++.+..+. ..+|+++.-.+|..+     .....+.+
T Consensus         3 ~Ly~~~~sp~~~kv~~~L~~~-----gi~y~~~~v~~~~~~~~~~~~~~p~-~~vP~l~~~~~~~~l-----~es~~I~~   71 (77)
T cd03041           3 ELYEFEGSPFCRLVREVLTEL-----ELDVILYPCPKGSPKRDKFLEKGGK-VQVPYLVDPNTGVQM-----FESADIVK   71 (77)
T ss_pred             eEecCCCCchHHHHHHHHHHc-----CCcEEEEECCCChHHHHHHHHhCCC-CcccEEEeCCCCeEE-----EcHHHHHH
Confidence            457788999999987777664     44444455543    2345555566 899988542234322     24566767


Q ss_pred             HHHHH
Q 031271          156 KTEKR  160 (162)
Q Consensus       156 ~l~~~  160 (162)
                      +|.+.
T Consensus        72 yL~~~   76 (77)
T cd03041          72 YLFKT   76 (77)
T ss_pred             HHHHh
Confidence            66653

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.

>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC

Probab=94.98  E-value=0.02  Score=39.08  Aligned_cols=75  Identities=19%  Similarity=0.320  Sum_probs=44.6

Q ss_pred             EEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcH----HHHHhcCCCCCccEEEEE-cCCeEEEE------EcCC
Q 031271           80 IYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLP----EAAKAFDLIDVLPTFVLV-KRGKEIDR------VVGA  148 (162)
Q Consensus        80 v~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~----~l~~~~~i~~~~Ptiv~~-~~Gk~i~~------~~g~  148 (162)
                      ..|+.++|+.|++....|++-     ++.|-.+|+.+.+    ++.+-++. .+.|..-++ ++|.....      ..+.
T Consensus         2 ~iY~~~~C~~c~ka~~~L~~~-----~i~~~~idi~~~~~~~~el~~~~~~-~~~~~~~l~~~~~~~~~~l~~~~~~~~~   75 (111)
T cd03036           2 KFYEYPKCSTCRKAKKWLDEH-----GVDYTAIDIVEEPPSKEELKKWLEK-SGLPLKKFFNTSGKSYRELGLKDKLPSL   75 (111)
T ss_pred             EEEECCCCHHHHHHHHHHHHc-----CCceEEecccCCcccHHHHHHHHHH-cCCCHHHHHhcCCchHHhCCcccccccC
Confidence            358899999999998888773     6777777775443    34444444 445533333 34432211      1233


Q ss_pred             CHHHHHHHHHHH
Q 031271          149 KKDELQMKTEKR  160 (162)
Q Consensus       149 ~~~~l~~~l~~~  160 (162)
                      +.+++.+++.++
T Consensus        76 s~~e~~~~l~~~   87 (111)
T cd03036          76 SEEEALELLSSD   87 (111)
T ss_pred             CHHHHHHHHHhC
Confidence            556677776654

Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.

>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA

Probab=94.83  E-value=0.11  Score=32.77  Aligned_cols=56  Identities=20%  Similarity=0.127  Sum_probs=46.9

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcC-C-cEEEEEECCCcHHHHHhcCCCCCccEEEE
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYT-D-VQFIKIDVDWLPEAAKAFDLIDVLPTFVL  135 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~-~-v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~  135 (162)
                      +..|-+...+.+.+....+.++-+++. + +.+-.||+.++|+++..+++ ..+||++-
T Consensus         4 L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~P~lAe~~~i-vAtPtLvk   61 (72)
T cd02978           4 LRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLKQPQLAEEDKI-VATPTLVK   61 (72)
T ss_pred             EEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccCHhHHhhCCE-EEechhhh
Confidence            555666676889998888888877763 3 88899999999999999999 99999764

KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor

>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria

Probab=94.38  E-value=0.43  Score=36.20  Aligned_cols=78  Identities=26%  Similarity=0.436  Sum_probs=52.3

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCC-----------c-------HHHHHhcCC-CCCccEEEEEcCC
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDW-----------L-------PEAAKAFDL-IDVLPTFVLVKRG  139 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~-----------~-------~~l~~~~~i-~~~~Ptiv~~~~G  139 (162)
                      |=.|++..|..|-.....|.+++.+ +++..+...+|-           .       ..++++++. ..++|.+++  ||
T Consensus         2 VELFTSQGCsSCPpAD~~L~~l~~~-~~Vi~LafHVDYWDylGWkD~fa~~~~t~RQr~Y~~~~~~~~vYTPQ~vV--nG   78 (202)
T PF06764_consen    2 VELFTSQGCSSCPPADRLLSELAAR-PDVIALAFHVDYWDYLGWKDPFASPEFTQRQRAYARRFGLRSVYTPQVVV--NG   78 (202)
T ss_dssp             EEEEE-TT-TT-HHHHHHHHHHHHH-TSSEEEEEE-STT-SSSS--TT--HHHHHHHHHHHHHTT-S---SSEEEE--TT
T ss_pred             eeEecCCCCCCCcHHHHHHHHhhcC-CCEEEEEecCCcccCCCCCCccCChhHHHHHHHHHHHhCCCCCcCCeEEE--CC
Confidence            5678999999999999999999998 588888888861           1       235555653 047788776  88


Q ss_pred             eEEEEEcCCCHHHHHHHHHHHh
Q 031271          140 KEIDRVVGAKKDELQMKTEKRR  161 (162)
Q Consensus       140 k~i~~~~g~~~~~l~~~l~~~~  161 (162)
                      +.-  ..|.+...+...|.+..
T Consensus        79 ~~~--~~g~~~~~~~~ai~~~~   98 (202)
T PF06764_consen   79 REH--RVGSDRAAVEAAIQAAR   98 (202)
T ss_dssp             TEE--EETT-HHHHHHHHHHHH
T ss_pred             eee--eeccCHHHHHHHHHHhh
Confidence            654  46888888888887653

The function of this family is unknown.; PDB: 2AXO_A.

>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function

Probab=94.28  E-value=0.15  Score=39.92  Aligned_cols=61  Identities=13%  Similarity=0.018  Sum_probs=39.8

Q ss_pred             CeeeeeCceEEEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCCCccEEEEE
Q 031271           69 GNVVFWVLKVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLV  136 (162)
Q Consensus        69 ~~~~~~~k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~  136 (162)
                      .++..+.|+.+++..+.|||.|...+=.|--...+|.++.+....-+.       .+.-..+|+++|.
T Consensus        52 ~d~~~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfGn~~l~~~~S~~-------~d~~pn~Ptl~F~  112 (249)
T PF06053_consen   52 QDLAPNGKPEVIFIGWEGCPYCAAESWALYIALSRFGNFSLEYHYSDP-------YDNYPNTPTLIFN  112 (249)
T ss_pred             cccCCCCeeEEEEEecccCccchhhHHHHHHHHHhcCCeeeEEeecCc-------ccCCCCCCeEEEe
Confidence            556777789999999999999998765555555557776332222222       1111578887765

>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=94.26  E-value=1.4  Score=33.19  Aligned_cols=104  Identities=18%  Similarity=0.189  Sum_probs=65.0

Q ss_pred             ccccceeEEec-CCC---eeeeeC---ceEEEEEe-cCCChhhhhhhHHHHHHHHhcC--CcEEEEEECC----------
Q 031271           56 YCINEMVLNIN-DGG---NVVFWV---LKVVIYYT-AAWCGPCKFIEPYVKDFAAMYT--DVQFIKIDVD----------  115 (162)
Q Consensus        56 ~~~~~~~~~~~-~~~---~~~~~~---k~vvv~F~-a~wC~~C~~~~~~l~~~~~~~~--~v~f~~vd~d----------  115 (162)
                      ...|+|..... .|.   .+...+   |-++++|| ++.-+.|-.....+.+...+|.  ++.++.+.+|          
T Consensus         7 ~~aP~F~~~a~~~~~~~~~i~l~d~~gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g~eVigvS~Ds~fsH~aW~~   86 (194)
T COG0450           7 KKAPDFTANAVLGGEIFEEITLSDYYGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRGVEVIGVSTDSVFSHKAWKA   86 (194)
T ss_pred             CcCCCcEEEEEecCceeeEEechhhcCcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcCCEEEEEecCcHHHHHHHHh
Confidence            34566666655 553   444433   55577777 5566778777767766666664  5888888775          


Q ss_pred             ------------------CcHHHHHhcCCCCC----cc---EEEEEcCCeEEEEE-----cCCCHHHHHHHHHHH
Q 031271          116 ------------------WLPEAAKAFDLIDV----LP---TFVLVKRGKEIDRV-----VGAKKDELQMKTEKR  160 (162)
Q Consensus       116 ------------------~~~~l~~~~~i~~~----~P---tiv~~~~Gk~i~~~-----~g~~~~~l~~~l~~~  160 (162)
                                        ...++++.||+ ..    ..   +|++-++|++-...     .|.+.+++...|+.+
T Consensus        87 ~~~~~~gi~~i~~PmiaD~~~~vs~~ygv-l~~~~g~a~R~~FIIDp~g~ir~~~v~~~~iGRn~dEilR~idAl  160 (194)
T COG0450          87 TIREAGGIGKIKFPMIADPKGEIARAYGV-LHPEEGLALRGTFIIDPDGVIRHILVNPLTIGRNVDEILRVIDAL  160 (194)
T ss_pred             cHHhcCCccceecceEEcCchhHHHHcCC-cccCCCcceeEEEEECCCCeEEEEEEecCCCCcCHHHHHHHHHHH
Confidence                              23478999998 32    11   34444788654433     266788888777643

>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs

Probab=94.23  E-value=0.36  Score=29.62  Aligned_cols=57  Identities=18%  Similarity=0.171  Sum_probs=38.6

Q ss_pred             EEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCC-cHHHHHhcCCCCCccEEEEEcCCeEE
Q 031271           81 YYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDW-LPEAAKAFDLIDVLPTFVLVKRGKEI  142 (162)
Q Consensus        81 ~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~-~~~l~~~~~i~~~~Ptiv~~~~Gk~i  142 (162)
                      .|+.+||++|++..-.+++..-   .+.+..++... .+++.+.... ..+|++.. .+|..+
T Consensus         3 ly~~~~~p~~~rv~~~L~~~gl---~~e~~~v~~~~~~~~~~~~np~-~~vP~L~~-~~g~~l   60 (71)
T cd03060           3 LYSFRRCPYAMRARMALLLAGI---TVELREVELKNKPAEMLAASPK-GTVPVLVL-GNGTVI   60 (71)
T ss_pred             EEecCCCcHHHHHHHHHHHcCC---CcEEEEeCCCCCCHHHHHHCCC-CCCCEEEE-CCCcEE
Confidence            4778999999998777765422   25556666543 4566676777 89999864 346554

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r

>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]

Probab=93.99  E-value=0.46  Score=39.77  Aligned_cols=81  Identities=15%  Similarity=0.201  Sum_probs=55.2

Q ss_pred             EEEEecCCChhhhhhh--HHHHHHHHhcCC--cEEEEEECC--CcHHHHHhcCCCCCccEEEEE-cCCeEEEEEcCC-CH
Q 031271           79 VIYYTAAWCGPCKFIE--PYVKDFAAMYTD--VQFIKIDVD--WLPEAAKAFDLIDVLPTFVLV-KRGKEIDRVVGA-KK  150 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~--~~l~~~~~~~~~--v~f~~vd~d--~~~~l~~~~~i~~~~Ptiv~~-~~Gk~i~~~~g~-~~  150 (162)
                      +|.|-+........+.  -.........-.  +..++|+..  ....+..-|.+ ..+|.+.++ ..|..+..+.|. ..
T Consensus        22 fVVyI~gddE~s~kl~r~~w~d~~vs~~ls~~fVaIkiqags~aa~qFs~IYp~-v~vPs~ffIg~sGtpLevitg~v~a  100 (506)
T KOG2507|consen   22 FVVYISGDDEESDKLNRLTWTDASVSDSLSKYFVAIKIQAGSVAATQFSAIYPY-VSVPSIFFIGFSGTPLEVITGFVTA  100 (506)
T ss_pred             EEEEEecCchHhhHHhhccchhhhhhhhhhcceEEEEeccCchhhhhhhhhccc-ccccceeeecCCCceeEEeeccccH
Confidence            5556666666666665  222333222222  444555543  44567888999 999998877 899999999999 88


Q ss_pred             HHHHHHHHHH
Q 031271          151 DELQMKTEKR  160 (162)
Q Consensus       151 ~~l~~~l~~~  160 (162)
                      ++|...|++.
T Consensus       101 deL~~~i~Kv  110 (506)
T KOG2507|consen  101 DELASSIEKV  110 (506)
T ss_pred             HHHHHHHHHH
Confidence            9998888765

>KOG2640 consensus Thioredoxin [Function unknown]

Probab=93.93  E-value=0.021  Score=45.70  Aligned_cols=83  Identities=13%  Similarity=0.287  Sum_probs=60.7

Q ss_pred             eEEEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEE-CCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHH
Q 031271           77 KVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKID-VDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQ  154 (162)
Q Consensus        77 ~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd-~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~  154 (162)
                      +|-+.||++||+..+..+|.+.-....|+.+....++ .-..+.....|++ ...|++.+.. ..--.++-|. +...|+
T Consensus        78 ~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~i~h~~vee~~~lpsv~s~~~~-~~~ps~~~~n-~t~~~~~~~~r~l~sLv  155 (319)
T KOG2640|consen   78 YVSLLFYASWCPFSRAVRPEFDVRSSLFSSIQHFAVEESQALPSVFSSYGI-HSEPSNLMLN-QTCPASYRGERDLASLV  155 (319)
T ss_pred             cccccchhcccCcccccCcccchhhhhccccccccHHHHhhcccchhcccc-ccCCcceeec-cccchhhcccccHHHHH
Confidence            3368899999999999999998887778755444443 2356778899999 9999988753 3333444555 788888


Q ss_pred             HHHHHHh
Q 031271          155 MKTEKRR  161 (162)
Q Consensus       155 ~~l~~~~  161 (162)
                      ++..+..
T Consensus       156 ~fy~~i~  162 (319)
T KOG2640|consen  156 NFYTEIT  162 (319)
T ss_pred             HHHHhhc
Confidence            8776653

>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]

Probab=93.14  E-value=0.95  Score=30.98  Aligned_cols=25  Identities=28%  Similarity=0.591  Sum_probs=21.1

Q ss_pred             ECCCcHHHHHhcCCCCCccEEEEEcC
Q 031271          113 DVDWLPEAAKAFDLIDVLPTFVLVKR  138 (162)
Q Consensus       113 d~d~~~~l~~~~~i~~~~Ptiv~~~~  138 (162)
                      .+.=+|.+.++|+| ..+|++++.++
T Consensus        56 ~v~IdP~~F~~y~I-~~VPa~V~~~~   80 (113)
T PF09673_consen   56 GVQIDPRLFRQYNI-TAVPAFVVVKD   80 (113)
T ss_pred             ceeEChhHHhhCCc-eEcCEEEEEcC
Confidence            34446889999999 99999999877

The N-terminal portion of these proteins is heterogeneous.

>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC

Probab=93.06  E-value=0.98  Score=31.82  Aligned_cols=43  Identities=33%  Similarity=0.450  Sum_probs=30.8

Q ss_pred             CCcHHHHHhcCCCCCccEEEEEcCCe-----------EEEEEcCC-CHHHHHHHHH
Q 031271          115 DWLPEAAKAFDLIDVLPTFVLVKRGK-----------EIDRVVGA-KKDELQMKTE  158 (162)
Q Consensus       115 d~~~~l~~~~~i~~~~Ptiv~~~~Gk-----------~i~~~~g~-~~~~l~~~l~  158 (162)
                      .=+|.+.++|+| ..+|++++.+++.           ...+..|- +.+.-.+.+.
T Consensus        58 ~IdP~lF~~f~I-~~VPa~V~~~~~~~c~~~~~~~~~~~d~v~Gdvsl~~ALe~ia  112 (130)
T TIGR02742        58 QIDPQWFKQFDI-TAVPAFVVVKDGLACLPEQPCPESDYDVVYGNVSLKGALEKMA  112 (130)
T ss_pred             EEChHHHhhcCc-eEcCEEEEECCCCcccccCCCCCCCeeEEEecccHHHHHHHHH
Confidence            346889999999 9999999998774           35556665 5544444443

This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.

>PRK01655 spxA transcriptional regulator Spx; Reviewed

Probab=92.86  E-value=0.21  Score=35.10  Aligned_cols=34  Identities=18%  Similarity=0.479  Sum_probs=25.5

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCc
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWL  117 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~  117 (162)
                      +..|+.++|+.|++....|++.     ++.|-.+|+.+.
T Consensus         2 i~iY~~~~C~~C~ka~~~L~~~-----gi~~~~idi~~~   35 (131)
T PRK01655          2 VTLFTSPSCTSCRKAKAWLEEH-----DIPFTERNIFSS   35 (131)
T ss_pred             EEEEeCCCChHHHHHHHHHHHc-----CCCcEEeeccCC
Confidence            4568899999999998887763     666666776543

>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family

Probab=92.71  E-value=0.26  Score=33.77  Aligned_cols=34  Identities=18%  Similarity=0.354  Sum_probs=26.8

Q ss_pred             EEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcH
Q 031271           80 IYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLP  118 (162)
Q Consensus        80 v~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~  118 (162)
                      ..|+.++|+.|++....|++     .++.|-.+|+.+.+
T Consensus         2 ~iY~~~~C~~c~ka~~~L~~-----~~i~~~~idi~~~~   35 (117)
T TIGR01617         2 KVYGSPNCTTCKKARRWLEA-----NGIEYQFIDIGEDG   35 (117)
T ss_pred             EEEeCCCCHHHHHHHHHHHH-----cCCceEEEecCCCh
Confidence            35889999999999888877     36777788876544

This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.

>PHA03075 glutaredoxin-like protein; Provisional

Probab=92.34  E-value=0.24  Score=34.07  Aligned_cols=29  Identities=24%  Similarity=0.539  Sum_probs=25.2

Q ss_pred             ceEEEEEecCCChhhhhhhHHHHHHHHhc
Q 031271           76 LKVVIYYTAAWCGPCKFIEPYVKDFAAMY  104 (162)
Q Consensus        76 k~vvv~F~a~wC~~C~~~~~~l~~~~~~~  104 (162)
                      |.|++.|.-|-|+-|......+.++..+|
T Consensus         2 K~tLILfGKP~C~vCe~~s~~l~~ledeY   30 (123)
T PHA03075          2 KKTLILFGKPLCSVCESISEALKELEDEY   30 (123)
T ss_pred             CceEEEeCCcccHHHHHHHHHHHHhhccc
Confidence            45699999999999999999998877766

>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC

Probab=91.98  E-value=0.24  Score=33.41  Aligned_cols=33  Identities=15%  Similarity=0.139  Sum_probs=25.2

Q ss_pred             EEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCc
Q 031271           80 IYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWL  117 (162)
Q Consensus        80 v~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~  117 (162)
                      ..|+.++|+.|++....|++-     ++.|-.+|+.+.
T Consensus         2 ~iy~~~~C~~crka~~~L~~~-----~i~~~~~di~~~   34 (105)
T cd03035           2 TLYGIKNCDTVKKARKWLEAR-----GVAYTFHDYRKD   34 (105)
T ss_pred             EEEeCCCCHHHHHHHHHHHHc-----CCCeEEEecccC
Confidence            468899999999998888774     666666666543

The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.

>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2

Probab=91.87  E-value=1.9  Score=26.56  Aligned_cols=71  Identities=11%  Similarity=0.213  Sum_probs=43.1

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECC--CcHHHHHhcCCCCCccEEEEEc--CCeEEEEEcCCCHHHHH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVD--WLPEAAKAFDLIDVLPTFVLVK--RGKEIDRVVGAKKDELQ  154 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d--~~~~l~~~~~i~~~~Ptiv~~~--~Gk~i~~~~g~~~~~l~  154 (162)
                      +..|+.+.|++|++.+-.|...     ++.|-.++++  ...++ +.-+. ..+|+++.-.  +|+.+.     ....+.
T Consensus         2 i~Ly~~~~~p~c~kv~~~L~~~-----gi~y~~~~~~~~~~~~~-~~~~~-~~vP~l~~~~~~~~~~l~-----eS~~I~   69 (77)
T cd03040           2 ITLYQYKTCPFCCKVRAFLDYH-----GIPYEVVEVNPVSRKEI-KWSSY-KKVPILRVESGGDGQQLV-----DSSVII   69 (77)
T ss_pred             EEEEEcCCCHHHHHHHHHHHHC-----CCceEEEECCchhHHHH-HHhCC-CccCEEEECCCCCccEEE-----cHHHHH
Confidence            4567889999999998777654     4444444443  22343 34556 7999987542  244332     355566


Q ss_pred             HHHHHHh
Q 031271          155 MKTEKRR  161 (162)
Q Consensus       155 ~~l~~~~  161 (162)
                      ++|++++
T Consensus        70 ~yL~~~~   76 (77)
T cd03040          70 STLKTYL   76 (77)
T ss_pred             HHHHHHc
Confidence            6766654

Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.

>TIGR02654 circ_KaiB circadian clock protein KaiB

Probab=91.81  E-value=0.58  Score=30.63  Aligned_cols=68  Identities=16%  Similarity=0.128  Sum_probs=52.1

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhc-CC-cEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMY-TD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA  148 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~-~~-v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~  148 (162)
                      +=.|.+..-+.++.....+.++-+.+ ++ +.+-.||+.++|+++..+++ ..+||++-. --....++.|-
T Consensus         6 LrLyvag~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~~qP~lAE~~~I-vATPtLIK~-~P~P~rriiGd   75 (87)
T TIGR02654         6 LKLYVAGNTPNSVRALKTLKNILETEFQGVYALKVIDVLKNPQLAEEDKI-LATPTLSKI-LPPPVRKIIGD   75 (87)
T ss_pred             EEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCE-EEecHHhhc-CCCCcceeecc
Confidence            44566777888998888888886654 44 88888999999999999999 999997643 23445566665

Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.

>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E

Probab=91.32  E-value=1.1  Score=27.36  Aligned_cols=56  Identities=14%  Similarity=0.089  Sum_probs=32.7

Q ss_pred             EEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeE
Q 031271           81 YYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKE  141 (162)
Q Consensus        81 ~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~  141 (162)
                      .|+.++|++|.+.+-.|....-.   +..+.++........+..+- ..+|+++. .+|..
T Consensus         3 Ly~~~~~p~~~rvr~~L~~~gl~---~~~~~~~~~~~~~~~~~~~~-~~vP~L~~-~~~~~   58 (71)
T cd03037           3 LYIYEHCPFCVKARMIAGLKNIP---VEQIILQNDDEATPIRMIGA-KQVPILEK-DDGSF   58 (71)
T ss_pred             eEecCCCcHhHHHHHHHHHcCCC---eEEEECCCCchHHHHHhcCC-CccCEEEe-CCCeE
Confidence            46679999999987776654221   33333443333333445556 78898753 34544

coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.

>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1

Probab=91.11  E-value=1.3  Score=30.16  Aligned_cols=55  Identities=16%  Similarity=0.233  Sum_probs=44.8

Q ss_pred             ceeEEecCCCeeeeeC---ceEEEEEecCCChhhhhhhHHHHHHHHhcC--CcEEEEEECC
Q 031271           60 EMVLNINDGGNVVFWV---LKVVIYYTAAWCGPCKFIEPYVKDFAAMYT--DVQFIKIDVD  115 (162)
Q Consensus        60 ~~~~~~~~~~~~~~~~---k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~--~v~f~~vd~d  115 (162)
                      ++++.+.+|+.+..+.   |+++|.=.|+-|+.-. ..+.|+++.++|.  ++.++.+-+.
T Consensus         3 df~~~~~~G~~v~l~~y~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPcn   62 (108)
T PF00255_consen    3 DFSAKDIDGKPVSLSKYKGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKGLEILAFPCN   62 (108)
T ss_dssp             GSEEEBTTSSEEEGGGGTTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEBS
T ss_pred             ceeeeCCCCCEECHHHcCCCEEEEEecccccCCcc-ccHHHHHHHHHHhcCCeEEEeeehH
Confidence            4678889999887766   8888888899999998 7779999999996  4777777654

11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....

>PRK09301 circadian clock protein KaiB; Provisional

Probab=91.05  E-value=0.74  Score=31.09  Aligned_cols=75  Identities=15%  Similarity=0.165  Sum_probs=56.1

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhc-CC-cEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC--CHHHHH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMY-TD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA--KKDELQ  154 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~-~~-v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~--~~~~l~  154 (162)
                      +=.|.+..-+.++.....+.++-+.+ ++ +.+-.||+.++|+++..+++ ..+||++-. --....|+.|-  +.+.+.
T Consensus         9 LrLyVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~qPelAE~~~I-vATPTLIK~-~P~P~rriiGDlsd~~kVL   86 (103)
T PRK09301          9 LKLYVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVLKNPQLAEEDKI-LATPTLAKI-LPPPVRKIIGDLSDREKVL   86 (103)
T ss_pred             EEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCe-EEecHHhhc-CCCCcceeecccccHHHHH
Confidence            55566788888998888888886654 44 88888999999999999999 999996643 23455666665  455544


Q ss_pred             H
Q 031271          155 M  155 (162)
Q Consensus       155 ~  155 (162)
                      .
T Consensus        87 ~   87 (103)
T PRK09301         87 I   87 (103)
T ss_pred             H
Confidence            3

>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds

Probab=90.99  E-value=3.3  Score=27.54  Aligned_cols=73  Identities=8%  Similarity=-0.001  Sum_probs=45.0

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcC-CcEEEEEECCCcHHHHHhcCCCCCccEEEEEcC------C-eEEEEEcCC-C
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYT-DVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKR------G-KEIDRVVGA-K  149 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~-~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~------G-k~i~~~~g~-~  149 (162)
                      +|-|+..--.   .....+.+++..++ +..|...   ...+++..+++   .|++++|+.      - .....+.|. +
T Consensus        22 Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~---~~~~~~~~~~~---~~~ivl~~p~~~~~k~de~~~~y~g~~~   92 (104)
T cd03069          22 VVGFFEDEDS---KLLSEFLKAADTLRESFRFAHT---SDKQLLEKYGY---GEGVVLFRPPRLSNKFEDSSVKFDGDLD   92 (104)
T ss_pred             EEEEEcCCCc---hHHHHHHHHHHhhhhcCEEEEE---ChHHHHHhcCC---CCceEEEechhhhcccCcccccccCcCC
Confidence            5555555333   35567788888884 5877543   33466777765   577788821      1 111224564 7


Q ss_pred             HHHHHHHHHHH
Q 031271          150 KDELQMKTEKR  160 (162)
Q Consensus       150 ~~~l~~~l~~~  160 (162)
                      .+.|.+||..+
T Consensus        93 ~~~l~~fi~~~  103 (104)
T cd03069          93 SSKIKKFIREN  103 (104)
T ss_pred             HHHHHHHHHhh
Confidence            88999999865

It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.

>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S

Probab=90.68  E-value=0.59  Score=28.35  Aligned_cols=57  Identities=16%  Similarity=0.248  Sum_probs=37.5

Q ss_pred             EEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECC----CcHHHHHhcCCCCCccEEEEEcCCeEE
Q 031271           81 YYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVD----WLPEAAKAFDLIDVLPTFVLVKRGKEI  142 (162)
Q Consensus        81 ~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d----~~~~l~~~~~i~~~~Ptiv~~~~Gk~i  142 (162)
                      .|+.++|++|++..-.+....-.   +....++..    ..+++.+.... ..+|+++. .+|..+
T Consensus         3 Ly~~~~s~~~~~~~~~L~~~~l~---~~~~~v~~~~~~~~~~~~~~~~p~-~~vP~l~~-~~~~~l   63 (74)
T cd03051           3 LYDSPTAPNPRRVRIFLAEKGID---VPLVTVDLAAGEQRSPEFLAKNPA-GTVPVLEL-DDGTVI   63 (74)
T ss_pred             EEeCCCCcchHHHHHHHHHcCCC---ceEEEeecccCccCCHHHHhhCCC-CCCCEEEe-CCCCEE
Confidence            57789999999998777665222   444455542    24566666777 89999864 355443

cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.

>COG5429 Uncharacterized secreted protein [Function unknown]

Probab=90.31  E-value=1  Score=34.88  Aligned_cols=80  Identities=21%  Similarity=0.216  Sum_probs=56.7

Q ss_pred             eEEEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECC------------------CcHHHHHhcCCCCCccEEEEEcC
Q 031271           77 KVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVD------------------WLPEAAKAFDLIDVLPTFVLVKR  138 (162)
Q Consensus        77 ~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d------------------~~~~l~~~~~i~~~~Ptiv~~~~  138 (162)
                      .||=.|++..|..|-.....|.+++++ +++.-+...+|                  ....+.+.|+. ..++|--.+-|
T Consensus        43 ~VVELfTSQGCsSCPPAd~~l~k~a~~-~~vlALsyhVdYWdYlGWkDtlar~enTeRQ~aY~~a~g~-~~vyTPQavvn  120 (261)
T COG5429          43 GVVELFTSQGCSSCPPADANLAKLADD-PGVLALSYHVDYWDYLGWKDTLARKENTERQRAYARAFGA-RGVYTPQAVVN  120 (261)
T ss_pred             eEEEEeecCCcCCCChHHHHHHHhccC-CCEEEEEEeecccccCCccccccchhhhHHHHHHHHhhcc-CCCCCchheee
Confidence            346778899999999999999998874 46666666554                  22356777777 76666555558


Q ss_pred             CeEEEEEcCCCHHHHHHHHHHH
Q 031271          139 GKEIDRVVGAKKDELQMKTEKR  160 (162)
Q Consensus       139 Gk~i~~~~g~~~~~l~~~l~~~  160 (162)
                      |+...  .|.++..+...|...
T Consensus       121 Gr~~~--~Gad~~~i~~~i~a~  140 (261)
T COG5429         121 GRVHA--NGADPGAIEDAIAAM  140 (261)
T ss_pred             chhhh--cCCCHHHHHHHHHHh
Confidence            86553  477888888877643

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=90.19  E-value=3.5  Score=35.44  Aligned_cols=70  Identities=11%  Similarity=0.154  Sum_probs=46.9

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEE-EEEcCC-CHHHHHHH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEI-DRVVGA-KKDELQMK  156 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i-~~~~g~-~~~~l~~~  156 (162)
                      -|.++.+.|..|..+...+++++..-+.+.+...+.+            ...|++.+..+|+.. -++.|. .-.+|..+
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~~~~------------~~~p~~~~~~~~~~~~i~f~g~P~g~Ef~s~   89 (517)
T PRK15317         22 ELVASLDDSEKSAELKELLEEIASLSDKITVEEDSLD------------VRKPSFSITRPGEDTGVRFAGIPMGHEFTSL   89 (517)
T ss_pred             EEEEEeCCCchHHHHHHHHHHHHHhCCceEEEEccCC------------CCCCEEEEEcCCccceEEEEecCccHHHHHH
Confidence            4445555899999999999999987666666442211            247999888766432 456676 66666666


Q ss_pred             HHHH
Q 031271          157 TEKR  160 (162)
Q Consensus       157 l~~~  160 (162)
                      |...
T Consensus        90 i~~i   93 (517)
T PRK15317         90 VLAL   93 (517)
T ss_pred             HHHH
Confidence            6544

>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes

Probab=90.14  E-value=0.65  Score=31.66  Aligned_cols=34  Identities=15%  Similarity=0.430  Sum_probs=25.5

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCc
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWL  117 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~  117 (162)
                      +..|+.++|+.|++....|++.     ++.|-.+|+.+.
T Consensus         2 i~iY~~~~C~~c~ka~~~L~~~-----gi~~~~idi~~~   35 (115)
T cd03032           2 IKLYTSPSCSSCRKAKQWLEEH-----QIPFEERNLFKQ   35 (115)
T ss_pred             EEEEeCCCCHHHHHHHHHHHHC-----CCceEEEecCCC
Confidence            3468899999999998888773     566666666543

It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.

>COG3019 Predicted metal-binding protein [General function prediction only]

Probab=90.02  E-value=2.4  Score=30.22  Aligned_cols=71  Identities=14%  Similarity=0.262  Sum_probs=50.5

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCC---CCCccEEEEEcCCeEEEEEcCCCHHHHHH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDL---IDVLPTFVLVKRGKEIDRVVGAKKDELQM  155 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~l~~~~~i---~~~~Ptiv~~~~Gk~i~~~~g~~~~~l~~  155 (162)
                      ++.|+.|.|+=|......++.     .++.+-.+..+.-..+-++|||   ..+-=|.++  +|+.+.-++  ..+.+..
T Consensus        28 ~~vyksPnCGCC~~w~~~mk~-----~Gf~Vk~~~~~d~~alK~~~gIp~e~~SCHT~VI--~Gy~vEGHV--Pa~aI~~   98 (149)
T COG3019          28 MVVYKSPNCGCCDEWAQHMKA-----NGFEVKVVETDDFLALKRRLGIPYEMQSCHTAVI--NGYYVEGHV--PAEAIAR   98 (149)
T ss_pred             EEEEeCCCCccHHHHHHHHHh-----CCcEEEEeecCcHHHHHHhcCCChhhccccEEEE--cCEEEeccC--CHHHHHH
Confidence            788999999999987776663     3688888888888888889998   123335554  887776444  3444555


Q ss_pred             HHH
Q 031271          156 KTE  158 (162)
Q Consensus       156 ~l~  158 (162)
                      +++
T Consensus        99 ll~  101 (149)
T COG3019          99 LLA  101 (149)
T ss_pred             HHh
Confidence            444

>PRK12559 transcriptional regulator Spx; Provisional

Probab=89.93  E-value=0.56  Score=32.97  Aligned_cols=32  Identities=19%  Similarity=0.606  Sum_probs=24.0

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECC
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVD  115 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d  115 (162)
                      +..|+.++|+.|++....|++-     ++.|-.+|+.
T Consensus         2 i~iY~~~~C~~crkA~~~L~~~-----gi~~~~~di~   33 (131)
T PRK12559          2 VVLYTTASCASCRKAKAWLEEN-----QIDYTEKNIV   33 (131)
T ss_pred             EEEEeCCCChHHHHHHHHHHHc-----CCCeEEEEee
Confidence            4568899999999998877764     5555555654

>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E

Probab=89.64  E-value=1.7  Score=26.40  Aligned_cols=69  Identities=14%  Similarity=0.120  Sum_probs=41.2

Q ss_pred             EEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCC-cHHHHHhcCCCCCccEEEEEcCCeEEEEEcCCCHHHHHHHHH
Q 031271           80 IYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDW-LPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQMKTE  158 (162)
Q Consensus        80 v~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~-~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~~~~~l~~~l~  158 (162)
                      ..|+.++|+.|++..-.++...-.   +....++... .+++.+.... ..+|++.  .+|..+.     ....+..+|.
T Consensus         2 ~ly~~~~~~~~~~v~~~l~~~gi~---~~~~~v~~~~~~~~~~~~~p~-~~vP~l~--~~~~~l~-----es~aI~~yL~   70 (73)
T cd03059           2 TLYSGPDDVYSHRVRIVLAEKGVS---VEIIDVDPDNPPEDLAELNPY-GTVPTLV--DRDLVLY-----ESRIIMEYLD   70 (73)
T ss_pred             EEEECCCChhHHHHHHHHHHcCCc---cEEEEcCCCCCCHHHHhhCCC-CCCCEEE--ECCEEEE-----cHHHHHHHHH
Confidence            357889999999988777654222   3444455443 3456666667 8999774  3443321     3444555554


Q ss_pred             H
Q 031271          159 K  159 (162)
Q Consensus       159 ~  159 (162)
                      +
T Consensus        71 ~   71 (73)
T cd03059          71 E   71 (73)
T ss_pred             h
Confidence            3

coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.

>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=89.63  E-value=0.39  Score=28.23  Aligned_cols=56  Identities=11%  Similarity=0.021  Sum_probs=35.6

Q ss_pred             EEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcH--HHHHhcCCCCCccEEEEEcCCeEE
Q 031271           81 YYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLP--EAAKAFDLIDVLPTFVLVKRGKEI  142 (162)
Q Consensus        81 ~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~--~l~~~~~i~~~~Ptiv~~~~Gk~i  142 (162)
                      .|+.++|+.|.+..-.++...-.   +....++.+...  ++....+. ..+|++..  +|..+
T Consensus         3 ly~~~~~~~~~~~~~~l~~~~i~---~~~~~~~~~~~~~~~~~~~~~~-~~~P~l~~--~~~~~   60 (71)
T cd00570           3 LYYFPGSPRSLRVRLALEEKGLP---YELVPVDLGEGEQEEFLALNPL-GKVPVLED--GGLVL   60 (71)
T ss_pred             EEeCCCCccHHHHHHHHHHcCCC---cEEEEeCCCCCCCHHHHhcCCC-CCCCEEEE--CCEEE
Confidence            47788999999988777665222   444445443322  35566777 89998764  46544

In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=89.62  E-value=4.3  Score=34.89  Aligned_cols=71  Identities=14%  Similarity=0.179  Sum_probs=47.2

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeE-EEEEcCC-CHHHHHHH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKE-IDRVVGA-KKDELQMK  156 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~-i~~~~g~-~~~~l~~~  156 (162)
                      -|.++.+.|..|..+...+++++..-+.+.+...+.          +. ...|++.+..+|+. --++.|. .-.+|..+
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~s~ki~~~~~~~----------~~-~~~p~~~~~~~~~~~~i~f~g~P~g~Ef~s~   90 (515)
T TIGR03140        22 TLVLSAGSHEKSKELLELLDEIASLSDKISLTQNTA----------DT-LRKPSFTILRDGADTGIRFAGIPGGHEFTSL   90 (515)
T ss_pred             EEEEEeCCCchhHHHHHHHHHHHHhCCCeEEEEecC----------Cc-CCCCeEEEecCCcccceEEEecCCcHHHHHH
Confidence            444444479999999999999998766666654332          23 46799988877653 2455666 56666666


Q ss_pred             HHHH
Q 031271          157 TEKR  160 (162)
Q Consensus       157 l~~~  160 (162)
                      |...
T Consensus        91 i~~i   94 (515)
T TIGR03140        91 VLAI   94 (515)
T ss_pred             HHHH
Confidence            6543

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides

Probab=89.58  E-value=4.4  Score=26.77  Aligned_cols=68  Identities=12%  Similarity=0.153  Sum_probs=44.4

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeE-EEEEcCC-CHHHHHHH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKE-IDRVVGA-KKDELQMK  156 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~-i~~~~g~-~~~~l~~~  156 (162)
                      ++.|..+. ..|..+...+++++..-+.+.+...+.+            ...|++.+..+|+. --++.|. .-.++..+
T Consensus        23 l~~f~~~~-~~~~e~~~ll~e~a~lSdkI~~~~~~~~------------~~~P~~~i~~~~~~~gIrF~GiP~GhEf~Sl   89 (94)
T cd02974          23 LVASLDDS-EKSAELLELLEEIASLSDKITLEEDNDD------------ERKPSFSINRPGEDTGIRFAGIPMGHEFTSL   89 (94)
T ss_pred             EEEEeCCC-cchHHHHHHHHHHHHhCCceEEEEecCC------------CCCCEEEEecCCCcccEEEEecCCchhHHHH
Confidence            45555544 9999999999999886665665443321            24799998877633 1455676 56666666


Q ss_pred             HHH
Q 031271          157 TEK  159 (162)
Q Consensus       157 l~~  159 (162)
                      |..
T Consensus        90 ila   92 (94)
T cd02974          90 VLA   92 (94)
T ss_pred             HHH
Confidence            543

AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-

>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=89.23  E-value=2.7  Score=25.52  Aligned_cols=56  Identities=20%  Similarity=0.296  Sum_probs=37.2

Q ss_pred             EEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECC----CcHHHHHhcCCCCCccEEEEEcCCeEE
Q 031271           81 YYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVD----WLPEAAKAFDLIDVLPTFVLVKRGKEI  142 (162)
Q Consensus        81 ~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d----~~~~l~~~~~i~~~~Ptiv~~~~Gk~i  142 (162)
                      .|+.++|+.|++..-.++...-   .+....++..    ..+++.+.... ..+|+++.  +|..+
T Consensus         3 Ly~~~~~~~~~~v~~~l~~~gi---~~e~~~i~~~~~~~~~~~~~~~~p~-~~vP~l~~--~~~~l   62 (74)
T cd03045           3 LYYLPGSPPCRAVLLTAKALGL---ELNLKEVNLMKGEHLKPEFLKLNPQ-HTVPTLVD--NGFVL   62 (74)
T ss_pred             EEeCCCCCcHHHHHHHHHHcCC---CCEEEEecCccCCcCCHHHHhhCcC-CCCCEEEE--CCEEE
Confidence            5788999999988777766522   2455555542    23667777677 89999963  45443

GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.

>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=89.09  E-value=5.3  Score=27.05  Aligned_cols=78  Identities=13%  Similarity=0.078  Sum_probs=52.7

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCC-cEEEEEECCC--cHHHHHhcCCCC----CccE-EEEEcCCeEEEEEcCC-C
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDW--LPEAAKAFDLID----VLPT-FVLVKRGKEIDRVVGA-K  149 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~-v~f~~vd~d~--~~~l~~~~~i~~----~~Pt-iv~~~~Gk~i~~~~g~-~  149 (162)
                      ++.|..+- ..-......+.++++...+ -.++-||+..  ...||..+.+ .    --|. +.=|++|..-..+... +
T Consensus        23 LvLy~ks~-k~a~~~Lk~~~~~A~~vkG~gT~~~vdCgd~e~kKLCKKlKv-~~~~kp~~~~LkHYKdG~fHkdYdR~~t  100 (112)
T cd03067          23 LVLYSKSA-KSAEALLKLLSDVAQAVKGQGTIAWIDCGDSESRKLCKKLKV-DPSSKPKPVELKHYKDGDFHTEYNRQLT  100 (112)
T ss_pred             EEEEecch-hhHHHHHHHHHHHHHHhcCceeEEEEecCChHHHHHHHHHcc-CCCCCCCcchhhcccCCCccccccchhh
Confidence            55555443 3333445578888888877 6777777765  6789999999 6    4553 4457999776655554 6


Q ss_pred             HHHHHHHHH
Q 031271          150 KDELQMKTE  158 (162)
Q Consensus       150 ~~~l~~~l~  158 (162)
                      ...+..+++
T Consensus       101 ~kSmv~Flr  109 (112)
T cd03067         101 FKSMVAFLR  109 (112)
T ss_pred             HHHHHHHhh
Confidence            777777765

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.

>PF13778 DUF4174: Domain of unknown function (DUF4174)

Probab=89.07  E-value=5.6  Score=27.31  Aligned_cols=80  Identities=13%  Similarity=0.031  Sum_probs=48.7

Q ss_pred             EEEEe-cCCChhhhhhhHHHHHHHHhcC--CcEEEEE-ECCCc-----------HHHHHhcCCCC--CccEEEEEcCCeE
Q 031271           79 VIYYT-AAWCGPCKFIEPYVKDFAAMYT--DVQFIKI-DVDWL-----------PEAAKAFDLID--VLPTFVLVKRGKE  141 (162)
Q Consensus        79 vv~F~-a~wC~~C~~~~~~l~~~~~~~~--~v~f~~v-d~d~~-----------~~l~~~~~i~~--~~Ptiv~~~~Gk~  141 (162)
                      +|.|. ....+.=+.....|.+-...+.  ++.++.+ +-...           ..+.+.|++ .  ++-.+++-++|.+
T Consensus        13 lvv~aps~~d~~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~~~~~~~~~~~~~~~~lr~~l~~-~~~~f~~vLiGKDG~v   91 (118)
T PF13778_consen   13 LVVFAPSADDPRYQQQLEELQNNRCGLDERDIVVIVITGDGARSPGKPLSPEDIQALRKRLRI-PPGGFTVVLIGKDGGV   91 (118)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhhhhccccCceEEEEEeCCccccccCcCCHHHHHHHHHHhCC-CCCceEEEEEeCCCcE
Confidence            45554 2344445555666666444454  3555544 33222           278889996 4  3324445599999


Q ss_pred             EEEEcCC-CHHHHHHHHHH
Q 031271          142 IDRVVGA-KKDELQMKTEK  159 (162)
Q Consensus       142 i~~~~g~-~~~~l~~~l~~  159 (162)
                      ..+.... +.++|-..|..
T Consensus        92 K~r~~~p~~~~~lf~~ID~  110 (118)
T PF13778_consen   92 KLRWPEPIDPEELFDTIDA  110 (118)
T ss_pred             EEecCCCCCHHHHHHHHhC
Confidence            9988777 89998888764

>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds

Probab=88.10  E-value=6.1  Score=26.53  Aligned_cols=74  Identities=16%  Similarity=0.070  Sum_probs=42.1

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcC-CcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCe--------EEEEEcC-C
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYT-DVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGK--------EIDRVVG-A  148 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~-~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk--------~i~~~~g-~  148 (162)
                      +|-|+..--.   .....+.+++..+. ++.|..   .....+...+++ . .|.+++|+.-+        ....-.. .
T Consensus        23 VVG~F~~~~~---~~~~~F~~vA~~~Rdd~~F~~---t~~~~~~~~~~~-~-~~~vvl~rp~~~~~k~e~~~~~~~~~~~   94 (107)
T cd03068          23 IIGVFSGEED---PAYQLYQDAANSLREDYKFHH---TFDSEIFKSLKV-S-PGQLVVFQPEKFQSKYEPKSHVLNKKDS   94 (107)
T ss_pred             EEEEECCCCC---HHHHHHHHHHHhcccCCEEEE---EChHHHHHhcCC-C-CCceEEECcHHHhhhcCcceeeeecccc
Confidence            4555544333   34556788888884 488754   333477788888 4 56667762221        1111111 2


Q ss_pred             -CHHHHHHHHHHH
Q 031271          149 -KKDELQMKTEKR  160 (162)
Q Consensus       149 -~~~~l~~~l~~~  160 (162)
                       ..+.|..||+++
T Consensus        95 ~~~~~~~~f~~~~  107 (107)
T cd03068          95 TSEDELKDFFKEH  107 (107)
T ss_pred             chHHHHHHHHhcC
Confidence             334488888764

It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.

>PRK13344 spxA transcriptional regulator Spx; Reviewed

Probab=88.00  E-value=1  Score=31.64  Aligned_cols=32  Identities=16%  Similarity=0.479  Sum_probs=24.1

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECC
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVD  115 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d  115 (162)
                      +..|+.++|+.|++....|++-     ++.|-.+|+.
T Consensus         2 i~iY~~~~C~~crkA~~~L~~~-----~i~~~~~d~~   33 (132)
T PRK13344          2 IKIYTISSCTSCKKAKTWLNAH-----QLSYKEQNLG   33 (132)
T ss_pred             EEEEeCCCCHHHHHHHHHHHHc-----CCCeEEEECC
Confidence            3468899999999988777663     5666666664

>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria

Probab=87.20  E-value=0.28  Score=31.78  Aligned_cols=52  Identities=21%  Similarity=0.224  Sum_probs=43.1

Q ss_pred             EecCCChhhhhhhHHHHHHHHhc-CC-cEEEEEECCCcHHHHHhcCCCCCccEEE
Q 031271           82 YTAAWCGPCKFIEPYVKDFAAMY-TD-VQFIKIDVDWLPEAAKAFDLIDVLPTFV  134 (162)
Q Consensus        82 F~a~wC~~C~~~~~~l~~~~~~~-~~-v~f~~vd~d~~~~l~~~~~i~~~~Ptiv  134 (162)
                      |-+..-+.+..+...+..+.+.+ ++ +.+-.||+.++|+++..+++ ..+||++
T Consensus         3 yV~g~~~~s~~a~~~l~~l~~~~l~~~~~LeVIDv~~~P~lAe~~~i-vAtPtLi   56 (82)
T PF07689_consen    3 YVAGRTPSSERAIENLRRLCEEYLGGRYELEVIDVLEQPELAEEDRI-VATPTLI   56 (82)
T ss_dssp             EESSBHHHHHHHHHHHHHHHHCHCTTTEEEEEEETTTSHSHHTTTEE-ECHHHHH
T ss_pred             EECCCChHHHHHHHHHHHHHHhhCCCcEEEEEEEcccCHhHHhHCCe-eecceEe
Confidence            44555677788888888888765 33 99999999999999999999 9999875

Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.

>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A

Probab=87.01  E-value=5.2  Score=24.60  Aligned_cols=68  Identities=15%  Similarity=0.165  Sum_probs=46.2

Q ss_pred             EecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCC-cHHHHHhcCCCCCccEEEEEcCCeEEEEEcCCCHHHHHHHHHHH
Q 031271           82 YTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDW-LPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQMKTEKR  160 (162)
Q Consensus        82 F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~-~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~~~~~l~~~l~~~  160 (162)
                      |+.++|++|+++.=.++...-   .+.+..++... ...+.+...- ..+|++.  .+|..+.     +...+.++|++.
T Consensus         2 y~~~~Sp~~~kv~~~l~~~~i---~~~~~~v~~~~~~~~~~~~~p~-~~vPvL~--~~g~~l~-----dS~~I~~yL~~~   70 (75)
T PF13417_consen    2 YGFPGSPYSQKVRLALEEKGI---PYELVPVDPEEKRPEFLKLNPK-GKVPVLV--DDGEVLT-----DSAAIIEYLEER   70 (75)
T ss_dssp             EEETTSHHHHHHHHHHHHHTE---EEEEEEEBTTSTSHHHHHHSTT-SBSSEEE--ETTEEEE-----SHHHHHHHHHHH
T ss_pred             CCcCCChHHHHHHHHHHHcCC---eEEEeccCcccchhHHHhhccc-ccceEEE--ECCEEEe-----CHHHHHHHHHHH
Confidence            678999999998766655321   25555665544 4667777788 9999997  5576553     455666666654

...

>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=86.63  E-value=1.5  Score=33.72  Aligned_cols=38  Identities=34%  Similarity=0.418  Sum_probs=29.5

Q ss_pred             HHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHHHHHHHh
Q 031271          119 EAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQMKTEKRR  161 (162)
Q Consensus       119 ~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~~l~~~~  161 (162)
                      ..+++.|| +++|+|++  +|+..  +.|. +++.|...|++..
T Consensus       175 ~~A~e~gI-~gVP~fv~--d~~~~--V~Gaq~~~v~~~al~~~~  213 (225)
T COG2761         175 AAAQEMGI-RGVPTFVF--DGKYA--VSGAQPYDVLEDALRQLL  213 (225)
T ss_pred             HHHHHCCC-ccCceEEE--cCcEe--ecCCCCHHHHHHHHHHHH
Confidence            46789999 99999998  44333  4577 8899999888764

>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=85.64  E-value=1.8  Score=32.74  Aligned_cols=42  Identities=17%  Similarity=0.181  Sum_probs=34.6

Q ss_pred             HHHHhcCCCCCccEEEEEcCCeEEEEEcC--C-CHHHHHHHHHHHh
Q 031271          119 EAAKAFDLIDVLPTFVLVKRGKEIDRVVG--A-KKDELQMKTEKRR  161 (162)
Q Consensus       119 ~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g--~-~~~~l~~~l~~~~  161 (162)
                      .+++++++ .++||+++-.||+...--.|  + +++.+..++.+.+
T Consensus       165 ~l~~rlg~-~GfPTl~le~ng~~~~l~~g~y~~~~~~~~arl~~~~  209 (212)
T COG3531         165 RLMQRLGA-AGFPTLALERNGTMYVLGTGAYFGSPDAWLARLAQRL  209 (212)
T ss_pred             HHHHHhcc-CCCCeeeeeeCCceEeccCCcccCCcHHHHHHHHHHH
Confidence            47789999 99999999999988766666  3 7888888887754

>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins

Probab=85.23  E-value=6.5  Score=27.43  Aligned_cols=51  Identities=14%  Similarity=0.162  Sum_probs=33.6

Q ss_pred             CCcEEEEEECCCcHH----------HHHhcCCCCCccEEEEEcCCeEEEEEcCCCHHHHHHHHH
Q 031271          105 TDVQFIKIDVDWLPE----------AAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQMKTE  158 (162)
Q Consensus       105 ~~v~f~~vd~d~~~~----------l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~~~~~l~~~l~  158 (162)
                      .++.+.+.++.++|.          +.+.-|. ..+|-+++  ||+++..-.=++.++|.+|+.
T Consensus        39 ~gv~v~RyNL~~~P~aF~~n~~V~~~L~~~G~-e~LPitlV--dGeiv~~G~YPt~eEl~~~~~   99 (123)
T PF06953_consen   39 QGVEVERYNLAQNPQAFVENPEVNQLLQTEGA-EALPITLV--DGEIVKTGRYPTNEELAEWLG   99 (123)
T ss_dssp             TT-EEEEEETTT-TTHHHHSHHHHHHHHHH-G-GG-SEEEE--TTEEEEESS---HHHHHHHHT
T ss_pred             CCceEEEEccccCHHHHHhCHHHHHHHHHcCc-ccCCEEEE--CCEEEEecCCCCHHHHHHHhC
Confidence            469999999987653          4455688 89997765  998886532238999999875

ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.

>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=84.36  E-value=6.2  Score=26.57  Aligned_cols=56  Identities=23%  Similarity=0.256  Sum_probs=41.4

Q ss_pred             cCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCCCccEEE-EEcCCeEEE
Q 031271           84 AAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFV-LVKRGKEID  143 (162)
Q Consensus        84 a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv-~~~~Gk~i~  143 (162)
                      .|-|+++.++...|....    -+.|..+|+=+++++.+...-...+||+- +|-+|+.+.
T Consensus        27 ~P~CGFS~~~vqiL~~~g----~v~~~~vnVL~d~eiR~~lk~~s~WPT~PQLyi~GEfvG   83 (105)
T COG0278          27 FPQCGFSAQAVQILSACG----VVDFAYVDVLQDPEIRQGLKEYSNWPTFPQLYVNGEFVG   83 (105)
T ss_pred             CCCCCccHHHHHHHHHcC----CcceeEEeeccCHHHHhccHhhcCCCCCceeeECCEEec
Confidence            457888888776666542    18899999999999887665437888865 678998774

>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=83.74  E-value=8.2  Score=27.98  Aligned_cols=63  Identities=14%  Similarity=0.016  Sum_probs=47.4

Q ss_pred             eeeccccceeEEecCCCeeeeeC---ceE-EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECC
Q 031271           53 CLIYCINEMVLNINDGGNVVFWV---LKV-VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVD  115 (162)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~---k~v-vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d  115 (162)
                      ......|+|.+...|-+.+...+   |.. +..|=+=.-+-|......|.+.+.++.+..++-|..|
T Consensus        19 ~vGd~ap~ftl~~~dL~~v~l~~~~gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~~~~Vl~IS~D   85 (158)
T COG2077          19 QVGDKAPDFTLVGKDLNDVSLADFAGKKKVISVFPSIDTPVCATQVRKFNEEAAKLGNTVVLCISMD   85 (158)
T ss_pred             ccCCcCCceEEEcCcccceeccccCCceEEEEEccCCCCchhhHHHHHHHHHHhccCCcEEEEEeCC
Confidence            33445677888888888876664   444 4445455778999999999999999999888888776

>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []

Probab=83.64  E-value=6.6  Score=30.47  Aligned_cols=38  Identities=16%  Similarity=0.333  Sum_probs=30.7

Q ss_pred             eEEEEEecCCChhhhhhhHHHHHHHHh-----cCCcEEEEEEC
Q 031271           77 KVVIYYTAAWCGPCKFIEPYVKDFAAM-----YTDVQFIKIDV  114 (162)
Q Consensus        77 ~vvv~F~a~wC~~C~~~~~~l~~~~~~-----~~~v~f~~vd~  114 (162)
                      ++||-+-..+|..|......|+.+..+     |++|.|+.|+-
T Consensus        28 VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~   70 (238)
T PF04592_consen   28 VTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNH   70 (238)
T ss_pred             EEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcC
Confidence            348888888999999988888888754     45699999975

It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding

>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=83.62  E-value=4.6  Score=25.88  Aligned_cols=59  Identities=12%  Similarity=0.149  Sum_probs=37.9

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCc-HHHHHhcCCCCCccEEEEEcCCeEE
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWL-PEAAKAFDLIDVLPTFVLVKRGKEI  142 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~-~~l~~~~~i~~~~Ptiv~~~~Gk~i  142 (162)
                      +..|+.+.|++|.+..-.+....-   .+.++.++.... .++.+.... ..+|.++. .+|..+
T Consensus        19 ~~Ly~~~~sp~~~kv~~~L~~~gl---~~~~~~v~~~~~~~~~~~~np~-~~vPvL~~-~~g~~l   78 (89)
T cd03055          19 IRLYSMRFCPYAQRARLVLAAKNI---PHEVININLKDKPDWFLEKNPQ-GKVPALEI-DEGKVV   78 (89)
T ss_pred             EEEEeCCCCchHHHHHHHHHHcCC---CCeEEEeCCCCCcHHHHhhCCC-CCcCEEEE-CCCCEE
Confidence            455778889999998766665422   255556665443 346666667 89999874 335443

The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega

>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif

Probab=81.96  E-value=1.8  Score=31.83  Aligned_cols=36  Identities=25%  Similarity=0.342  Sum_probs=27.4

Q ss_pred             cHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHHHH
Q 031271          117 LPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQMKT  157 (162)
Q Consensus       117 ~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~~l  157 (162)
                      +...+...|+ .++|++++  +|+.+  ..|. +.+.|.+.|
T Consensus       164 ~~~~a~~~gv-~G~Pt~vv--~g~~~--~~G~~~~~~~~~~i  200 (201)
T cd03024         164 DEARARQLGI-SGVPFFVF--NGKYA--VSGAQPPEVFLQAL  200 (201)
T ss_pred             HHHHHHHCCC-CcCCEEEE--CCeEe--ecCCCCHHHHHHHh
Confidence            3456778999 99999988  66533  5677 788888776

It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.

>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs

Probab=80.11  E-value=10  Score=22.63  Aligned_cols=56  Identities=16%  Similarity=0.293  Sum_probs=35.9

Q ss_pred             EEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECC----CcHHHHHhcCCCCCccEEEEEcCCeEE
Q 031271           81 YYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVD----WLPEAAKAFDLIDVLPTFVLVKRGKEI  142 (162)
Q Consensus        81 ~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d----~~~~l~~~~~i~~~~Ptiv~~~~Gk~i  142 (162)
                      .|+.++|+.|.+..-.++...-   .+....++..    ..+++.+.... ..+|++..  +|..+
T Consensus         3 Ly~~~~~~~~~~v~~~l~~~~~---~~~~~~i~~~~~~~~~~~~~~~~p~-~~vP~l~~--~~~~i   62 (73)
T cd03056           3 LYGFPLSGNCYKVRLLLALLGI---PYEWVEVDILKGETRTPEFLALNPN-GEVPVLEL--DGRVL   62 (73)
T ss_pred             EEeCCCCccHHHHHHHHHHcCC---CcEEEEecCCCcccCCHHHHHhCCC-CCCCEEEE--CCEEE
Confidence            4778999999988777666432   2455555542    23455555566 78999864  46544

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	162
1xfl_A	124	Solution Structure Of Thioredoxin H1 From Arabidops		2e-17
1wmj_A	130	Solution Structure Of Thioredoxin Type H From Oryza		4e-17
2vm1_A	118	Crystal Structure Of Barley Thioredoxin H Isoform 1		1e-15
2vlt_A	122	Crystal Structure Of Barley Thioredoxin H Isoform 2		1e-14
2oe0_A	114	Crystal Structure Of Mitochondrial Thioredoxin 3 Fr		6e-14
2iwt_A	125	Thioredoxin H2 (Hvtrxh2) In A Mixed Disulfide Compl		1e-13
2fa4_A	111	Crystal Structure Of Oxidized Form From Saccharomyc		2e-13
1ti3_A	113	Solution Structure Of The Thioredoxin H1 From Popla		2e-13
2hsy_A	104	Solution Structure Of Thioredoxin 2 From Saccharomy		2e-13
2vim_A	104	X-Ray Structure Of Fasciola Hepatica Thioredoxin Le		3e-13
3zzx_A	105	Crystallographic Structure Of Thioredoxin From Lito		4e-13
4dss_B	112	Crystal Structure Of Peroxiredoxin Ahp1 From Saccha		2e-12
3pin_A	104	Crystal Structure Of Mxr1 From Saccharomyces Cerevi		2e-12
2xbq_A	117	Crystal Structure Of Reduced Schistosoma Mansoni Th		3e-12
2xbi_A	108	Crystal Structure Of Schistosoma Mansoni Thioredoxi		3e-12
2i9h_A	103	Nmr Solution Structure Of The Reduced Form Of Thior		3e-12
3f3q_A	109	Crystal Structure Of The Oxidised Form Of Thioredox		3e-12
3d21_A	139	Crystal Structure Of A Poplar Wild-Type Thioredoxin		4e-12
2l4q_A	116	Solution Structures Of Oxidized And Reduced Thiored		1e-11
2i1u_A	121	Mycobacterium Tuberculosis Thioredoxin C Length = 1		1e-11
2ifq_A	105	Crystal Structure Of S-Nitroso Thioredoxin Length =		2e-11
2ifq_B	105	Crystal Structure Of S-Nitroso Thioredoxin Length =		2e-11
1syr_A	112	Initial Structural Analysis Of Plasmodium Falciparu		2e-11
3m9j_A	105	Crystal Structure Of Human Thioredoxin C6973S DOUBL		3e-11
2hsh_A	105	Crystal Structure Of C73s Mutant Of Human Thioredox		3e-11
3f3r_A	109	Crystal Structure Of Yeast Thioredoxin1-Glutathione		3e-11
1trs_A	105	The High-Resolution Three-Dimensional Solution Stru		5e-11
3trx_A	105	High-Resolution Three-Dimensional Structure Of Redu		5e-11
1aiu_A	105	Human Thioredoxin (D60n Mutant, Reduced Form) Lengt		6e-11
3d22_A	139	Crystal Structure Of A Poplar Thioredoxin H Mutant,		7e-11
3nof_A	118	Mycobacterium Tuberculosis Thioredoxin C C40s Mutan		1e-10
3qfa_C	116	Crystal Structure Of The Human Thioredoxin Reductas		3e-10
3kd0_A	105	Human Thioredoxin C35s,C62s,C69s,C73s Mutant Showin		3e-10
3e3e_A	105	Human Thioredoxin Double Mutant C35s,C73r Length =		5e-10
1mdi_A	105	High Resolution Solution Nmr Structure Of Mixed Dis		5e-10
1nsw_A	105	The Crystal Structure Of The K18g Mutant Of The Thi		1e-09
1quw_A	105	Solution Structure Of The Thioredoxin From Bacillus		2e-09
1rqm_A	105	Solution Structure Of The K18gR82E ALICYCLOBACILLUS		2e-09
1nw2_A	105	The Crystal Structure Of The Mutant R82e Of Thiored		2e-09
2j23_A	121	Cross-Reactivity And Crystal Structure Of Malassezi		3e-09
1r26_A	125	Crystal Structure Of Thioredoxin From Trypanosoma B		3e-09
1erw_A	105	Human Thioredoxin Double Mutant With Cys 32 Replace		5e-09
2o7k_A	107	S. Aureus Thioredoxin Length = 107		5e-09
2hxk_A	105	Crystal Structure Of S-Nitroso Thioredoxin Length =		6e-09
1m7t_A	107	Solution Structure And Dynamics Of The Human-Escher		7e-09
1xw9_A	106	Drospohila Thioredoxin, Oxidized, P21 Length = 106		7e-09
1xwa_A	111	Drospohila Thioredoxin, Oxidized, P41212 Length = 1		8e-09
2ppt_A	155	Crystal Structure Of Thioredoxin-2 Length = 155		2e-08
2o87_A	106	S. Aureus Thioredoxin P31s Mutant Length = 106		5e-08
2o85_A	107	S. Aureus Thioredoxin P31t Mutant Length = 107		5e-08
2f51_A	118	Structure Of Trichomonas Vaginalis Thioredoxin Leng		5e-08
2i4a_A	107	Crystal Structure Of Thioredoxin From The Acidophil		8e-08
2e0q_A	104	Crystal Structure Of K53e Thioredoxin From Sulfolob		1e-07
3die_A	106	Domain Swapping Of Staphylococcus Aureus Thioredoxi		1e-07
1dby_A	107	Nmr Structures Of Chloroplast Thioredoxin M Ch2 Fro		1e-07
1faa_A	124	Crystal Structure Of Thioredoxin F From Spinach Chl		2e-07
1f9m_A	112	Crystal Structure Of Thioredoxin F From Spinach Chl		2e-07
2diy_A	130	The Solution Structure Of The Thioredoxin Domain Of		3e-07
1t00_A	112	The Structure Of Thioredoxin From S. Coelicolor Len		4e-07
2wz9_A	153	Crystal Structure Of The Thioredoxin Domain Of Huma		5e-07
1uvz_A	119	Structure Of Human Thioredoxin 2 Length = 119		6e-07
2o89_A	107	S. Aureus Thioredoxin P31tC32S MUTANT Length = 107		6e-07
1thx_A	115	Thioredoxin-2 Length = 115		8e-07
2cvk_A	110	Crystal Structure Of Thermus Thermophilus Thioredox		8e-07
2yzu_A	109	Crystal Structure Of Oxidized Thioredoxin From Ther		8e-07
2yj7_A	106	Crystal Structure Of A Hyperstable Protein From The		8e-07
3hhv_A	110	The Crystal Structure Of The Thioredoxin A2 From Su		1e-06
2gzy_A	104	Solution Structures Of The Reduced Form Of Thioredo		1e-06
3p2a_A	148	Crystal Structure Of Thioredoxin 2 From Yersinia Pe		2e-06
1ep8_A	112	Crystal Structure Of A Mutated Thioredoxin, D30a, F		3e-06
1gl8_A	104	Solution Structure Of Thioredoxin M From Spinach, O		3e-06
1fb0_A	105	Crystal Structure Of Thioredoxin M From Spinach Chl		4e-06
2pu9_C	111	Crystal Srtucture Of The Binary Complex Between Fer		4e-06
1v98_A	140	Crystal Structure Analysis Of Thioredoxin From Ther		5e-06
1ep7_A	112	Crystal Structure Of Wt Thioredoxin H From Chlamydo		6e-06
2ipa_A	104	Solution Structure Of Trx-Arsc Complex Length = 104		2e-05
2voc_A	112	Thioredoxin A Active Site Mutants Form Mixed Disulf		2e-05
2h6z_A	108	Crystal Structure Of Thioredoxin Mutant E44d In Hex		3e-05
2puk_C	106	Crystal Srtucture Of The Binary Complex Between Fer		4e-05
2h73_A	108	Crystal Structure Of Thioredoxin Mutant D43e In Hex		5e-05
2h71_A	108	Crystal Structure Of Thioredoxin Mutant D47e In Hex		6e-05
2fch_A	108	Crystal Structure Of Thioredoxin Mutant G74s Length		7e-05
3dxb_A	222	Structure Of The Uhm Domain Of Puf60 Fused To Thior		7e-05
3hxs_A	141	Crystal Structure Of Bacteroides Fragilis Trxp Leng		8e-05
2h76_A	108	Crystal Structure Of Thioredoxin Mutant D10e In Hex		8e-05
2h75_A	108	Crystal Structure Of Thioredoxin Mutant D13e In Hex		8e-05
2h70_A	108	Crystal Structure Of Thioredoxin Mutant D9e In Hexa		8e-05
2h74_A	108	Crystal Structure Of Thioredoxin Mutant D2e In Hexa		8e-05
1xob_A	108	Thioredoxin (Reduced Dithio Form), Nmr, 20 Structur		9e-05
2eio_A	108	Design Of Disulfide-Linked Thioredoxin Dimers And M		9e-05
2trx_A	108	Crystal Structure Of Thioredoxin From Escherichia C		9e-05
2eir_A	108	Design Of Disulfide-Linked Thioredoxin Dimers And M		1e-04
1zzy_A	108	Crystal Structure Of Thioredoxin Mutant L7v Length		1e-04
3hyp_A	141	Crystal Structure Of Bacteroides Fragilis Trxp_s105		1e-04
3d6i_A	112	Structure Of The Thioredoxin-Like Domain Of Yeast G		1e-04
2h6y_A	108	Crystal Structure Of Thioredoxin Mutant E48d In Hex		1e-04
2h72_A	108	Crystal Structure Of Thioredoxin Mutant E85d In Hex		1e-04
3dyr_A	111	Crystal Structure Of E. Coli Thioredoxin Mutant I76		2e-04
2eiq_A	108	Design Of Disulfide-linked Thioredoxin Dimers And M		2e-04
2tir_A	108	Crystal Structure Analysis Of A Mutant Escherichia		3e-04
1srx_A	108	Three-Dimensional Structure Of Escherichia Coli Thi		3e-04
1gh2_A	107	Crystal Structure Of The Catalytic Domain Of A New		4e-04
1keb_A	108	Crystal Structure Of Double Mutant M37l,P40s E.Coli		7e-04
2o8v_B	128	Paps Reductase In A Covalent Complex With Thioredox		7e-04
3tco_A	109	Crystallographic And Spectroscopic Characterization		8e-04

>pdb|1XFL|A Chain A, Solution Structure Of Thioredoxin H1 From Arabidopsis Thaliana Length = 124

Iteration: 1
 Score = 84.3 bits (207), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 40/83 (48%), Positives = 54/83 (65%), Gaps = 1/83 (1%)
Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVK 137
           VV+ +TA+WCGPC+FI P+  D A    +V F+K+D D L   A  +  I  +PTF+ +K
Sbjct: 41  VVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKVDTDELKSVASDW-AIQAMPTFMFLK 99
Query: 138 RGKEIDRVVGAKKDELQMKTEKR 160
            GK +D+VVGAKKDELQ    K 
Sbjct: 100 EGKILDKVVGAKKDELQSTIAKH 122

>pdb|1WMJ|A Chain A, Solution Structure Of Thioredoxin Type H From Oryza Sativa Length = 130

Iteration: 1
 Score = 84.0 bits (206), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 36/77 (46%), Positives = 56/77 (72%), Gaps = 1/77 (1%)
Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVK 137
           V+I +TA+WCGPC+FI P   ++A  +    F+K+DVD L E A+ ++ ++ +PTF+ +K
Sbjct: 39  VIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDVDELKEVAEKYN-VEAMPTFLFIK 97
Query: 138 RGKEIDRVVGAKKDELQ 154
            G E D+VVGA+KD+LQ
Sbjct: 98  DGAEADKVVGARKDDLQ 114

>pdb|2VM1|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1 Crystallized Using Ammonium Sulfate As Precipitant Length = 118

Iteration: 1
 Score = 78.6 bits (192), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 32/79 (40%), Positives = 56/79 (70%), Gaps = 1/79 (1%)
Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVK 137
           V+I +TA+WCGPC+ I P   ++A  +    F+K+DVD L + A+A++ ++ +PTF+ +K
Sbjct: 31  VIIDFTASWCGPCRVIAPVFAEYAKKFPGAIFLKVDVDELKDVAEAYN-VEAMPTFLFIK 89
Query: 138 RGKEIDRVVGAKKDELQMK 156
            G+++D VVG +KD++  K
Sbjct: 90  DGEKVDSVVGGRKDDIHTK 108

>pdb|2VLT|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The Oxidized State Length = 122

Iteration: 1
 Score = 75.5 bits (184), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 36/79 (45%), Positives = 51/79 (64%), Gaps = 1/79 (1%)
Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVK 137
           VVI +TA+WCGPC+ + P   D A  + +  F+K+DVD L   A+ F  ++ +PTF+ +K
Sbjct: 37  VVIDFTASWCGPCRIMAPVFADLAKKFPNAVFLKVDVDELKPIAEQFS-VEAMPTFLFMK 95
Query: 138 RGKEIDRVVGAKKDELQMK 156
            G   DRVVGA K+EL  K
Sbjct: 96  EGDVKDRVVGAIKEELTAK 114

>pdb|2OE0|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From Saccharomyces Cerevisiae Length = 114

Iteration: 1
 Score = 73.2 bits (178), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 35/91 (38%), Positives = 56/91 (61%), Gaps = 1/91 (1%)
Query: 64  NINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKA 123
           N+ +  N++    K+VI + A WCGPCK ++P++      Y DV+F+K DVD  P+ AK 
Sbjct: 19  NLTEFRNLIKQNDKLVIDFYATWCGPCKMMQPHLTKLIQAYPDVRFVKCDVDESPDIAKE 78
Query: 124 FDLIDVLPTFVLVKRGKEIDRVVGAKKDELQ 154
            + +  +PTFVL K G+ I +++GA    L+
Sbjct: 79  CE-VTAMPTFVLGKDGQLIGKIIGANPTALE 108

>pdb|2IWT|A Chain A, Thioredoxin H2 (Hvtrxh2) In A Mixed Disulfide Complex With The Target Protein Basi Length = 125

Iteration: 1
 Score = 72.4 bits (176), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 35/79 (44%), Positives = 50/79 (63%), Gaps = 1/79 (1%)
Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVK 137
           VVI +TA+WCGP + + P   D A  + +  F+K+DVD L   A+ F  ++ +PTF+ +K
Sbjct: 40  VVIDFTASWCGPSRIMAPVFADLAKKFPNAVFLKVDVDELKPIAEQFS-VEAMPTFLFMK 98
Query: 138 RGKEIDRVVGAKKDELQMK 156
            G   DRVVGA K+EL  K
Sbjct: 99  EGDVKDRVVGAIKEELTAK 117

>pdb|2FA4|A Chain A, Crystal Structure Of Oxidized Form From Saccharomyces Cerevisiae Length = 111

Iteration: 1
 Score = 71.2 bits (173), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 46/71 (64%), Gaps = 1/71 (1%)
Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVK 137
           VV+ + A WCGPCK I P ++ FA  Y+D  F K+DVD + + A+  + +  +PT +  K
Sbjct: 29  VVVDFFATWCGPCKMIAPMIEKFAEQYSDAAFYKLDVDEVSDVAQKAE-VSSMPTLIFYK 87
Query: 138 RGKEIDRVVGA 148
            GKE+ RVVGA
Sbjct: 88  GGKEVTRVVGA 98

>pdb|1TI3|A Chain A, Solution Structure Of The Thioredoxin H1 From Poplar, A Cppc Active Site Variant Length = 113

Iteration: 1
 Score = 71.2 bits (173), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 32/76 (42%), Positives = 51/76 (67%), Gaps = 1/76 (1%)
Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVK 137
           +V+ +TA+WC PCK I P   + A  + +V F+K+DVD L   A+ ++ ++ +PTF+ +K
Sbjct: 29  IVVDFTASWCPPCKMIAPIFAELAKKFPNVTFLKVDVDELKAVAEEWN-VEAMPTFIFLK 87
Query: 138 RGKEIDRVVGAKKDEL 153
            GK +D+ VGA KD L
Sbjct: 88  DGKLVDKTVGADKDGL 103

>pdb|2HSY|A Chain A, Solution Structure Of Thioredoxin 2 From Saccharomyces Cerevisiae Length = 104

Iteration: 1
 Score = 71.2 bits (173), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 46/71 (64%), Gaps = 1/71 (1%)
Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVK 137
           VV+ + A WCGPCK I P ++ FA  Y+D  F K+DVD + + A+  + +  +PT +  K
Sbjct: 22  VVVDFFATWCGPCKMIAPMIEKFAEQYSDAAFYKLDVDEVSDVAQKAE-VSSMPTLIFYK 80
Query: 138 RGKEIDRVVGA 148
            GKE+ RVVGA
Sbjct: 81  GGKEVTRVVGA 91

>pdb|2VIM|A Chain A, X-Ray Structure Of Fasciola Hepatica Thioredoxin Length = 104

Iteration: 1
 Score = 70.9 bits (172), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 33/77 (42%), Positives = 49/77 (63%), Gaps = 1/77 (1%)
Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVK 137
           +V+ + A WCGPC+ I P V+  A    +V+F K+DVD   EAA  +  +  +PTFV +K
Sbjct: 22  IVVDFFAQWCGPCRNIAPKVEALAKEIPEVEFAKVDVDQNEEAAAKYS-VTAMPTFVFIK 80
Query: 138 RGKEIDRVVGAKKDELQ 154
            GKE+DR  GA + +L+
Sbjct: 81  DGKEVDRFSGANETKLR 97

>pdb|3ZZX|A Chain A, Crystallographic Structure Of Thioredoxin From Litopenaeus Vannamei Length = 105

Iteration: 1
 Score = 70.5 bits (171), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 36/97 (37%), Positives = 59/97 (60%), Gaps = 6/97 (6%)
Query: 65  INDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAF 124
           +N+ GN +     VVI + A WCGPCK I P +++ +   +DV F+K+DVD   + A+  
Sbjct: 15  LNEAGNKL-----VVIDFYATWCGPCKMIAPKLEELSQSMSDVVFLKVDVDECEDIAQD- 68
Query: 125 DLIDVLPTFVLVKRGKEIDRVVGAKKDELQMKTEKRR 161
           + I  +PTF+ +K G+++D + GA  D+L    EK +
Sbjct: 69  NQIACMPTFLFMKNGQKLDSLSGANYDKLLELVEKNK 105

>pdb|4DSS|B Chain B, Crystal Structure Of Peroxiredoxin Ahp1 From Saccharomyces Cerevisiae In Complex With Thioredoxin Trx2 Length = 112

Iteration: 1
 Score = 68.2 bits (165), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 45/71 (63%), Gaps = 1/71 (1%)
Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVK 137
           VV+ + A WCGP K I P ++ FA  Y+D  F K+DVD + + A+  + +  +PT +  K
Sbjct: 30  VVVDFFATWCGPSKMIAPMIEKFAEQYSDAAFYKLDVDEVSDVAQKAE-VSSMPTLIFYK 88
Query: 138 RGKEIDRVVGA 148
            GKE+ RVVGA
Sbjct: 89  GGKEVTRVVGA 99

>pdb|3PIN|A Chain A, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In Complex With Trx2 Length = 104

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 45/71 (63%), Gaps = 1/71 (1%)
Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVK 137
           VV+ + A WCGP K I P ++ FA  Y+D  F K+DVD + + A+  + +  +PT +  K
Sbjct: 22  VVVDFFATWCGPSKMIAPMIEKFAEQYSDAAFYKLDVDEVSDVAQKAE-VSSMPTLIFYK 80
Query: 138 RGKEIDRVVGA 148
            GKE+ RVVGA
Sbjct: 81  GGKEVTRVVGA 91

>pdb|2XBQ|A Chain A, Crystal Structure Of Reduced Schistosoma Mansoni Thioredoxin Pre-Protein At 1.7 Angstrom Length = 117

Iteration: 1
 Score = 67.8 bits (164), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 47/71 (66%), Gaps = 2/71 (2%)
Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVK 137
           VV+ + A WCGPCK I P  K+ +  Y D  F+K+DVD L E A+ ++ I  +PTF+ +K
Sbjct: 36  VVVDFFATWCGPCKTIAPLFKELSEKY-DAIFVKVDVDKLEETARKYN-ISAMPTFIAIK 93
Query: 138 RGKEIDRVVGA 148
            G+++  VVGA
Sbjct: 94  NGEKVGDVVGA 104

>pdb|2XBI|A Chain A, Crystal Structure Of Schistosoma Mansoni Thioredoxin At 1.6 Angstrom Length = 108

Iteration: 1
 Score = 67.8 bits (164), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 47/71 (66%), Gaps = 2/71 (2%)
Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVK 137
           VV+ + A WCGPCK I P  K+ +  Y D  F+K+DVD L E A+ ++ I  +PTF+ +K
Sbjct: 27  VVVDFFATWCGPCKTIAPLFKELSEKY-DAIFVKVDVDKLEETARKYN-ISAMPTFIAIK 84
Query: 138 RGKEIDRVVGA 148
            G+++  VVGA
Sbjct: 85  NGEKVGDVVGA 95

>pdb|2I9H|A Chain A, Nmr Solution Structure Of The Reduced Form Of Thioredoxin 1 From Yeast (Trx1) Length = 103

Iteration: 1
 Score = 67.8 bits (164), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 45/71 (63%), Gaps = 1/71 (1%)
Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVK 137
           VV+ + A WCGPCK I P ++ F+  Y    F K+DVD L + A+  + +  +PT +L K
Sbjct: 21  VVVDFYATWCGPCKMIAPMIEKFSEQYPQADFYKLDVDELGDVAQK-NEVSAMPTLLLFK 79
Query: 138 RGKEIDRVVGA 148
            GKE+ +VVGA
Sbjct: 80  NGKEVAKVVGA 90

>pdb|3F3Q|A Chain A, Crystal Structure Of The Oxidised Form Of Thioredoxin 1 From Saccharomyces Cerevisiae Length = 109

Iteration: 1
 Score = 67.8 bits (164), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 45/71 (63%), Gaps = 1/71 (1%)
Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVK 137
           VV+ + A WCGPCK I P ++ F+  Y    F K+DVD L + A+  + +  +PT +L K
Sbjct: 27  VVVDFYATWCGPCKMIAPMIEKFSEQYPQADFYKLDVDELGDVAQK-NEVSAMPTLLLFK 85
Query: 138 RGKEIDRVVGA 148
            GKE+ +VVGA
Sbjct: 86  NGKEVAKVVGA 96

>pdb|3D21|A Chain A, Crystal Structure Of A Poplar Wild-Type Thioredoxin H, Pttrxh4 Length = 139

Iteration: 1
 Score = 67.4 bits (163), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 31/79 (39%), Positives = 50/79 (63%), Gaps = 1/79 (1%)
Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVK 137
           V+  ++A WCGPCK I PY  + +  Y  + F+ IDVD L + + +++ I   PTF  ++
Sbjct: 49  VLANFSARWCGPCKQIAPYYIELSENYPSLMFLVIDVDELSDFSASWE-IKATPTFFFLR 107
Query: 138 RGKEIDRVVGAKKDELQMK 156
            G+++D++VGA K EL  K
Sbjct: 108 DGQQVDKLVGANKPELHKK 126

>pdb|2L4Q|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C From M. Tb Length = 116

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 47/73 (64%), Gaps = 2/73 (2%)
Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAA-MYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLV 136
           V++ + A WCGPCK + P +++ A    TD+   K+DVD  PE A+ F ++ + PT +L 
Sbjct: 28  VLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPETARNFQVVSI-PTLILF 86
Query: 137 KRGKEIDRVVGAK 149
           K G+ + R+VGAK
Sbjct: 87  KDGQPVKRIVGAK 99

>pdb|2I1U|A Chain A, Mycobacterium Tuberculosis Thioredoxin C Length = 121

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 47/73 (64%), Gaps = 2/73 (2%)
Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAA-MYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLV 136
           V++ + A WCGPCK + P +++ A    TD+   K+DVD  PE A+ F ++ + PT +L 
Sbjct: 33  VLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPETARNFQVVSI-PTLILF 91
Query: 137 KRGKEIDRVVGAK 149
           K G+ + R+VGAK
Sbjct: 92  KDGQPVKRIVGAK 104

>pdb|2IFQ|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin Length = 105

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 49/77 (63%), Gaps = 1/77 (1%)
Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVK 137
           VV+ ++A WCGPCK I+P+    +  Y++V F+++DVD   + A   + +  +PTF   K
Sbjct: 23  VVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASEXE-VKCMPTFQFFK 81
Query: 138 RGKEIDRVVGAKKDELQ 154
           +G+++    GA K++L+
Sbjct: 82  KGQKVGEFSGANKEKLE 98

>pdb|2IFQ|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin Length = 105

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 49/77 (63%), Gaps = 1/77 (1%)
Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVK 137
           VV+ ++A WCGPCK I+P+    +  Y++V F+++DVD   + A   + +  +PTF   K
Sbjct: 23  VVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECE-VKCMPTFQFFK 81
Query: 138 RGKEIDRVVGAKKDELQ 154
           +G+++    GA K++L+
Sbjct: 82  KGQKVGEFSGANKEKLE 98

>pdb|1SYR|A Chain A, Initial Structural Analysis Of Plasmodium Falciparum Thioredoxin Length = 112

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 49/82 (59%), Gaps = 1/82 (1%)
Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVK 137
           V++ + A WCGPCK I P+ ++ +  YT + FIK+DVD + E  +  + I  +PTF + K
Sbjct: 29  VIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDEVSEVTEK-ENITSMPTFKVYK 87
Query: 138 RGKEIDRVVGAKKDELQMKTEK 159
            G  +D ++GA    L+   EK
Sbjct: 88  NGSSVDTLLGANDSALKQLIEK 109

>pdb|3M9J|A Chain A, Crystal Structure Of Human Thioredoxin C6973S DOUBLE MUTANT, REDUCED Form Length = 105

Iteration: 1
 Score = 64.3 bits (155), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 49/77 (63%), Gaps = 1/77 (1%)
Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVK 137
           VV+ ++A WCGPCK I+P+    +  Y++V F+++DVD   + A   + +  +PTF   K
Sbjct: 23  VVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASESE-VKSMPTFQFFK 81
Query: 138 RGKEIDRVVGAKKDELQ 154
           +G+++    GA K++L+
Sbjct: 82  KGQKVGEFSGANKEKLE 98

>pdb|2HSH|A Chain A, Crystal Structure Of C73s Mutant Of Human Thioredoxin-1 Oxidized With H2o2 Length = 105

Iteration: 1
 Score = 64.3 bits (155), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 49/77 (63%), Gaps = 1/77 (1%)
Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVK 137
           VV+ ++A WCGPCK I+P+    +  Y++V F+++DVD   + A   + +  +PTF   K
Sbjct: 23  VVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECE-VKSMPTFQFFK 81
Query: 138 RGKEIDRVVGAKKDELQ 154
           +G+++    GA K++L+
Sbjct: 82  KGQKVGEFSGANKEKLE 98

>pdb|3F3R|A Chain A, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed Disulfide Complex Length = 109

Iteration: 1
 Score = 64.3 bits (155), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVK 137
           VV+ + A WCGP K I P ++ F+  Y    F K+DVD L + A+  + +  +PT +L K
Sbjct: 27  VVVDFYATWCGPSKMIAPMIEKFSEQYPQADFYKLDVDELGDVAQK-NEVSAMPTLLLFK 85
Query: 138 RGKEIDRVVGA 148
            GKE+ +VVGA
Sbjct: 86  NGKEVAKVVGA 96

>pdb|1TRS|A Chain A, The High-Resolution Three-Dimensional Solution Structures Of The Oxidized And Reduced States Of Human Thioredoxin Length = 105

Iteration: 1
 Score = 63.5 bits (153), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVK 137
           VV+ ++A WCGPCK I+P+    +  Y++V F+++DVD   + A   + +   PTF   K
Sbjct: 23  VVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDAQDVASEAE-VKATPTFQFFK 81
Query: 138 RGKEIDRVVGAKKDELQ 154
           +G+++    GA K++L+
Sbjct: 82  KGQKVGEFSGANKEKLE 98

>pdb|3TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced Recombinant Human Thioredoxin In Solution Length = 105

Iteration: 1
 Score = 63.5 bits (153), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVK 137
           VV+ ++A WCGPCK I+P+    +  Y++V F+++DVD   + A   + +   PTF   K
Sbjct: 23  VVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECE-VKCTPTFQFFK 81
Query: 138 RGKEIDRVVGAKKDELQ 154
           +G+++    GA K++L+
Sbjct: 82  KGQKVGEFSGANKEKLE 98

>pdb|1AIU|A Chain A, Human Thioredoxin (D60n Mutant, Reduced Form) Length = 105

Iteration: 1
 Score = 63.2 bits (152), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 49/77 (63%), Gaps = 1/77 (1%)
Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVK 137
           VV+ ++A WCGPCK I+P+    +  Y++V F+++DV+   + A   + +  +PTF   K
Sbjct: 23  VVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVNDCQDVASECE-VKCMPTFQFFK 81
Query: 138 RGKEIDRVVGAKKDELQ 154
           +G+++    GA K++L+
Sbjct: 82  KGQKVGEFSGANKEKLE 98

>pdb|3D22|A Chain A, Crystal Structure Of A Poplar Thioredoxin H Mutant, Pttrxh4c61s Length = 139

Iteration: 1
 Score = 63.2 bits (152), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVK 137
           V+  ++A WCGP + I PY  + +  Y  + F+ IDVD L + + +++ I   PTF  ++
Sbjct: 49  VLANFSARWCGPSRQIAPYYIELSENYPSLMFLVIDVDELSDFSASWE-IKATPTFFFLR 107
Query: 138 RGKEIDRVVGAKKDELQMK 156
            G+++D++VGA K EL  K
Sbjct: 108 DGQQVDKLVGANKPELHKK 126

>pdb|3NOF|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant Length = 118

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 46/73 (63%), Gaps = 2/73 (2%)
Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAA-MYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLV 136
           V++ + A WCGP K + P +++ A    TD+   K+DVD  PE A+ F ++ + PT +L 
Sbjct: 30  VLVDFWATWCGPSKMVAPVLEEIATERATDLTVAKLDVDTNPETARNFQVVSI-PTLILF 88
Query: 137 KRGKEIDRVVGAK 149
           K G+ + R+VGAK
Sbjct: 89  KDGQPVKRIVGAK 101

>pdb|3QFA|C Chain C, Crystal Structure Of The Human Thioredoxin Reductase-Thioredoxin Complex Length = 116

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVK 137
           VV+ ++A WCGP K I+P+    +  Y++V F+++DVD   + A   + +  +PTF   K
Sbjct: 34  VVVDFSATWCGPSKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECE-VKSMPTFQFFK 92
Query: 138 RGKEIDRVVGAKKDELQ 154
           +G+++    GA K++L+
Sbjct: 93  KGQKVGEFSGANKEKLE 109

>pdb|3KD0|A Chain A, Human Thioredoxin C35s,C62s,C69s,C73s Mutant Showing Cadmium Chloride Bound To The Active Site Length = 105

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVK 137
           VV+ ++A WCGP K I+P+    +  Y++V F+++DVD   + A   + +  +PTF   K
Sbjct: 23  VVVDFSATWCGPSKMIKPFFHSLSEKYSNVIFLEVDVDDSQDVASESE-VKSMPTFQFFK 81
Query: 138 RGKEIDRVVGAKKDELQ 154
           +G+++    GA K++L+
Sbjct: 82  KGQKVGEFSGANKEKLE 98

>pdb|3E3E|A Chain A, Human Thioredoxin Double Mutant C35s,C73r Length = 105

Iteration: 1
 Score = 60.1 bits (144), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVK 137
           VV+ ++A WCGP K I+P+    +  Y++V F+++DVD   + A   + +  +PTF   K
Sbjct: 23  VVVDFSATWCGPSKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECE-VKRMPTFQFFK 81
Query: 138 RGKEIDRVVGAKKDELQ 154
           +G+++    GA K++L+
Sbjct: 82  KGQKVGEFSGANKEKLE 98

>pdb|1MDI|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide Intermediate Between Mutant Human Thioredoxin And A 13 Residue Peptide Comprising Its Target Site In Human Nfkb Length = 105

Iteration: 1
 Score = 60.1 bits (144), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVK 137
           VV+ ++A WCGP K I+P+    +  Y++V F+++DVD   + A   + +   PTF   K
Sbjct: 23  VVVDFSATWCGPAKMIKPFFHSLSEKYSNVIFLEVDVDDAQDVASEAE-VKATPTFQFFK 81
Query: 138 RGKEIDRVVGAKKDELQ 154
           +G+++    GA K++L+
Sbjct: 82  KGQKVGEFSGANKEKLE 98

>pdb|1NSW|A Chain A, The Crystal Structure Of The K18g Mutant Of The Thioredoxin From Alicyclobacillus Acidocaldarius Length = 105

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 47/76 (61%), Gaps = 2/76 (2%)
Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLV 136
           V++ + AAWCGPC+ + P +++FA  + D V   K++VD  PE    F ++ + PT +L 
Sbjct: 20  VLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGIMSI-PTLILF 78
Query: 137 KRGKEIDRVVGAKKDE 152
           K G+ + +++G +  E
Sbjct: 79  KGGRPVKQLIGYQPKE 94

>pdb|1QUW|A Chain A, Solution Structure Of The Thioredoxin From Bacillus Acidocaldarius Length = 105

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 47/76 (61%), Gaps = 2/76 (2%)
Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLV 136
           V++ + AAWCGPC+ + P +++FA  + D V   K++VD  PE    F ++ + PT +L 
Sbjct: 20  VLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGIMSI-PTLILF 78
Query: 137 KRGKEIDRVVGAKKDE 152
           K G+ + +++G +  E
Sbjct: 79  KGGRPVKQLIGYQPKE 94

>pdb|1RQM|A Chain A, Solution Structure Of The K18gR82E ALICYCLOBACILLUS Acidocaldarius Thioredoxin Mutant Length = 105

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 47/76 (61%), Gaps = 2/76 (2%)
Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLV 136
           V++ + AAWCGPC+ + P +++FA  + D V   K++VD  PE    F ++ + PT +L 
Sbjct: 20  VLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGIMSI-PTLILF 78
Query: 137 KRGKEIDRVVGAKKDE 152
           K G+ + +++G +  E
Sbjct: 79  KGGEPVKQLIGYQPKE 94

>pdb|1NW2|A Chain A, The Crystal Structure Of The Mutant R82e Of Thioredoxin From Alicyclobacillus Acidocaldarius Length = 105

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 47/76 (61%), Gaps = 2/76 (2%)
Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLV 136
           V++ + AAWCGPC+ + P +++FA  + D V   K++VD  PE    F ++ + PT +L 
Sbjct: 20  VLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGIMSI-PTLILF 78
Query: 137 KRGKEIDRVVGAKKDE 152
           K G+ + +++G +  E
Sbjct: 79  KGGEPVKQLIGYQPKE 94

>pdb|2J23|A Chain A, Cross-Reactivity And Crystal Structure Of Malassezia Sympodialis Thioredoxin (Mala S 13), A Member Of A New Pan- Allergen Family Length = 121

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 34/79 (43%), Positives = 44/79 (55%), Gaps = 3/79 (3%)
Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTD--VQFIKIDVDWLPEAAKAFDLIDVLPTFVL 135
           VVI + A WCGPCK I P  +  +       V F K+DVD   + A+    I  +PTFV 
Sbjct: 36  VVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVDEQSQIAQEVG-IRAMPTFVF 94
Query: 136 VKRGKEIDRVVGAKKDELQ 154
            K G++ID VVGA   +LQ
Sbjct: 95  FKNGQKIDTVVGADPSKLQ 113

>pdb|1R26|A Chain A, Crystal Structure Of Thioredoxin From Trypanosoma Brucei Brucei Length = 125

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 79  VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKR 138
           V ++TA WCGPCK IE  ++  A  +  V+F K+D D   E      ++  LPTF++ + 
Sbjct: 41  VAWFTAVWCGPCKTIERPMEKIAYEFPTVKFAKVDADNNSEIVSKCRVLQ-LPTFIIARS 99
Query: 139 GKEIDRVVGAKKDELQMK 156
           GK +  V+GA    L+ K
Sbjct: 100 GKMLGHVIGANPGMLRQK 117

>pdb|1ERW|A Chain A, Human Thioredoxin Double Mutant With Cys 32 Replaced By Ser And Cys 35 Replaced By Ser Length = 105

Iteration: 1
 Score = 57.0 bits (136), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVK 137
           VV+ ++A W GP K I+P+    +  Y++V F+++DVD   + A   + +  +PTF   K
Sbjct: 23  VVVDFSATWSGPSKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECE-VKCMPTFQFFK 81
Query: 138 RGKEIDRVVGAKKDELQ 154
           +G+++    GA K++L+
Sbjct: 82  KGQKVGEFSGANKEKLE 98

>pdb|2O7K|A Chain A, S. Aureus Thioredoxin Length = 107

Iteration: 1
 Score = 57.0 bits (136), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 46/75 (61%), Gaps = 2/75 (2%)
Query: 79  VIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVK 137
           ++ + A WCGPCK I P +++ AA Y      +K+DVD  P  A  ++++ + PT ++ K
Sbjct: 24  LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSI-PTLIVFK 82
Query: 138 RGKEIDRVVGAKKDE 152
            G+ +D+VVG +  E
Sbjct: 83  DGQPVDKVVGFQPKE 97

>pdb|2HXK|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin Length = 105

Iteration: 1
 Score = 56.6 bits (135), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 49/77 (63%), Gaps = 1/77 (1%)
Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVK 137
           VV+ ++A WCGPCK I+P+    +  Y++V F+++DVD   + A   + +  +PTF   K
Sbjct: 23  VVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDXQDVASEXE-VKCMPTFQFFK 81
Query: 138 RGKEIDRVVGAKKDELQ 154
           +G+++    GA K++L+
Sbjct: 82  KGQKVGEFSGANKEKLE 98

>pdb|1M7T|A Chain A, Solution Structure And Dynamics Of The Human-Escherichia Coli Thioredoxin Chimera: Insights Into Thermodynamic Stability Length = 107

Iteration: 1
 Score = 56.6 bits (135), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVK 137
           VV+ ++A WCGPCK I+P+    +  Y++V F+++DVD   + A  +  I  +PT +L K
Sbjct: 23  VVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDAQDVAPKYG-IRGIPTLLLFK 81
Query: 138 RGKEIDRVVGA 148
            G+     VGA
Sbjct: 82  NGEVAATKVGA 92

>pdb|1XW9|A Chain A, Drospohila Thioredoxin, Oxidized, P21 Length = 106

Iteration: 1
 Score = 56.2 bits (134), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 45/78 (57%), Gaps = 2/78 (2%)
Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLV 136
           VV+ + A WCGPCK I P + + +  + D V  +K+DVD   + A  ++ I  +PTFV +
Sbjct: 23  VVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDIAMEYN-ISSMPTFVFL 81
Query: 137 KRGKEIDRVVGAKKDELQ 154
           K G +++   GA    L+
Sbjct: 82  KNGVKVEEFAGANAKRLE 99

>pdb|1XWA|A Chain A, Drospohila Thioredoxin, Oxidized, P41212 Length = 111

Iteration: 1
 Score = 56.2 bits (134), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 45/78 (57%), Gaps = 2/78 (2%)
Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLV 136
           VV+ + A WCGPCK I P + + +  + D V  +K+DVD   + A  ++ I  +PTFV +
Sbjct: 28  VVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDIAMEYN-ISSMPTFVFL 86
Query: 137 KRGKEIDRVVGAKKDELQ 154
           K G +++   GA    L+
Sbjct: 87  KNGVKVEEFAGANAKRLE 104

>pdb|2PPT|A Chain A, Crystal Structure Of Thioredoxin-2 Length = 155

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 51/112 (45%), Gaps = 4/112 (3%)
Query: 41  SDRLVMTNETGFCLIYCINEMVLNINDG--GNVVFWVLKVVIYYTAAWCGPCKFIEPYVK 98
           SDRL    + G C    I   V  I+           L +++ + A WCGPC+ + P  +
Sbjct: 28  SDRLAAGPKCGICGAGLITGKVAGIDPAILARAERDDLPLLVDFWAPWCGPCRQMAPQFQ 87
Query: 99  DFAA-MYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAK 149
             AA +   V+  KID    P  A     I  +P F+L  +G+E+ R  GA+
Sbjct: 88  AAAATLAGQVRLAKIDTQAHPAVA-GRHRIQGIPAFILFHKGRELARAAGAR 138

>pdb|2O87|A Chain A, S. Aureus Thioredoxin P31s Mutant Length = 106

Iteration: 1
 Score = 53.5 bits (127), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 45/75 (60%), Gaps = 2/75 (2%)
Query: 79  VIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVK 137
           ++ + A WCG CK I P +++ AA Y      +K+DVD  P  A  ++++ + PT ++ K
Sbjct: 23  LVDFWATWCGSCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSI-PTLIVFK 81
Query: 138 RGKEIDRVVGAKKDE 152
            G+ +D+VVG +  E
Sbjct: 82  DGQPVDKVVGFQPKE 96

>pdb|2O85|A Chain A, S. Aureus Thioredoxin P31t Mutant Length = 107

Iteration: 1
 Score = 53.5 bits (127), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 45/75 (60%), Gaps = 2/75 (2%)
Query: 79  VIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVK 137
           ++ + A WCG CK I P +++ AA Y      +K+DVD  P  A  ++++ + PT ++ K
Sbjct: 24  LVDFWATWCGTCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSI-PTLIVFK 82
Query: 138 RGKEIDRVVGAKKDE 152
            G+ +D+VVG +  E
Sbjct: 83  DGQPVDKVVGFQPKE 97

>pdb|2F51|A Chain A, Structure Of Trichomonas Vaginalis Thioredoxin Length = 118

Iteration: 1
 Score = 53.5 bits (127), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVK 137
           V++ + A WCGPC+ +   +   A    DV FIK+DVD    AA A+ +  +   F + K
Sbjct: 26  VLVDFFATWCGPCQRLGQILPSIAEANKDVTFIKVDVDKNGNAADAYGVSSIPALFFVKK 85
Query: 138 RGKEI---DRVVGAKKDELQMKTEK 159
            G EI   D+ VGA    ++   EK
Sbjct: 86  EGNEIKTLDQFVGADVSRIKADIEK 110

>pdb|2I4A|A Chain A, Crystal Structure Of Thioredoxin From The Acidophile Acetobacter Aceti Length = 107

Iteration: 1
 Score = 52.8 bits (125), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLV 136
           V++ + A WCGPCK I P + +    +   V   K+++D  PE   A+  +  +PT +LV
Sbjct: 23  VLVDFWAEWCGPCKMIGPALGEIGKEFAGKVTVAKVNIDDNPETPNAYQ-VRSIPTLMLV 81
Query: 137 KRGKEIDRVVGA 148
           + GK ID+ VGA
Sbjct: 82  RDGKVIDKKVGA 93

>pdb|2E0Q|A Chain A, Crystal Structure Of K53e Thioredoxin From Sulfolobus Tokodaii Strain7 Length = 104

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Query: 79  VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKR 138
           V+ + A WC PC  + P +++ A  Y  V F K++ D  P+ A  + ++  LPT +  K 
Sbjct: 20  VVDFWAEWCAPCLILAPIIEELAEDYPQVGFGKLNSDENPDIAARYGVMS-LPTVIFFKD 78
Query: 139 GKEIDRVVGA-KKDELQMK 156
           G+ +D ++GA  ++E++++
Sbjct: 79  GEPVDEIIGAVPREEIEIR 97

>pdb|3DIE|A Chain A, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a Mutant Length = 106

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Query: 84  AAWCGPCKFIEPYVKDFAAMYT-DVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEI 142
           A  CGPCK I P +++ AA Y      +K+DVD  P  A  ++++ + PT ++ K G+ +
Sbjct: 28  ATACGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSI-PTLIVFKDGQPV 86
Query: 143 DRVVGAKKDE 152
           D+VVG +  E
Sbjct: 87  DKVVGFQPKE 96

>pdb|1DBY|A Chain A, Nmr Structures Of Chloroplast Thioredoxin M Ch2 From The Green Alga Chlamydomonas Reinhardtii Length = 107

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 44/74 (59%), Gaps = 2/74 (2%)
Query: 76  LKVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFV 134
           + V++ + A WCGPC+ I P V + A  Y D ++ +K++ D  P  A  +  I  +PT +
Sbjct: 20  VPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVASEYG-IRSIPTIM 78
Query: 135 LVKRGKEIDRVVGA 148
           + K GK+ + ++GA
Sbjct: 79  VFKGGKKCETIIGA 92

>pdb|1FAA|A Chain A, Crystal Structure Of Thioredoxin F From Spinach Chloroplast (Long Form) Length = 124

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 43/85 (50%)
Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVK 137
           VV+     WCGPCK + P  +  A  Y DV F+K+D +   +       I V+PTF ++K
Sbjct: 40  VVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRVVPTFKILK 99
Query: 138 RGKEIDRVVGAKKDELQMKTEKRRN 162
               +  V GAK D+L    +  R+
Sbjct: 100 ENSVVGEVTGAKYDKLLEAIQAARS 124

>pdb|1F9M|A Chain A, Crystal Structure Of Thioredoxin F From Spinach Chloroplast (Short Form) Length = 112

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 43/85 (50%)
Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVK 137
           VV+     WCGPCK + P  +  A  Y DV F+K+D +   +       I V+PTF ++K
Sbjct: 28  VVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRVVPTFKILK 87
Query: 138 RGKEIDRVVGAKKDELQMKTEKRRN 162
               +  V GAK D+L    +  R+
Sbjct: 88  ENSVVGEVTGAKYDKLLEAIQAARS 112

>pdb|2DIY|A Chain A, The Solution Structure Of The Thioredoxin Domain Of Human Thioredoxin-Like Protein 2 Length = 130

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 23/85 (27%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVK 137
           +V+++ A W   C  +   + + A     V F+K++ + +PE ++ ++ I  +PTF+  K
Sbjct: 41  LVVHFWAPWAPQCAQMNEVMAELAKELPQVSFVKLEAEGVPEVSEKYE-ISSVPTFLFFK 99
Query: 138 RGKEIDRVVGAKKDELQMKTEKRRN 162
             ++IDR+ GA   EL  K ++  +
Sbjct: 100 NSQKIDRLDGAHAPELTKKVQRHAS 124

>pdb|1T00|A Chain A, The Structure Of Thioredoxin From S. Coelicolor Length = 112

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 45/73 (61%), Gaps = 2/73 (2%)
Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLV 136
           V++ + AAWCGPC+ I P ++  AA Y D ++ +K+++D  P  A  + ++ + PT  + 
Sbjct: 26  VLVDFWAAWCGPCRQIAPSLEAIAAEYGDKIEIVKLNIDENPGTAAKYGVMSI-PTLNVY 84
Query: 137 KRGKEIDRVVGAK 149
           + G+    +VGAK
Sbjct: 85  QGGEVAKTIVGAK 97

>pdb|2WZ9|A Chain A, Crystal Structure Of The Thioredoxin Domain Of Human Txnl2 Length = 153

Iteration: 1
 Score = 50.1 bits (118), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 23/85 (27%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVK 137
           +V+++ A W   C  +   + + A     V F+K++ + +PE ++ ++ I  +PTF+  K
Sbjct: 35  LVVHFWAPWAPQCAQMNEVMAELAKELPQVSFVKLEAEGVPEVSEKYE-ISSVPTFLFFK 93
Query: 138 RGKEIDRVVGAKKDELQMKTEKRRN 162
             ++IDR+ GA   EL  K ++  +
Sbjct: 94  NSQKIDRLDGAHAPELTKKVQRHAS 118

>pdb|1UVZ|A Chain A, Structure Of Human Thioredoxin 2 Length = 119

Iteration: 1
 Score = 50.1 bits (118), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 53/100 (53%), Gaps = 7/100 (7%)
Query: 63  LNINDGGN----VVFWVLKVVIYYTAAWCGPCKFIEPYVKDFAA-MYTDVQFIKIDVDWL 117
            NI DG +    VV     VV+ + A WCGPCK + P ++   A  +  V   K+D+D  
Sbjct: 15  FNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDH 74
Query: 118 PEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQMKT 157
            + A  ++ +  +PT + +K G  +D+ VG  KDE Q++ 
Sbjct: 75  TDLAIEYE-VSAVPTVLAMKNGDVVDKFVGI-KDEDQLEA 112

>pdb|2O89|A Chain A, S. Aureus Thioredoxin P31tC32S MUTANT Length = 107

Iteration: 1
 Score = 50.1 bits (118), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Query: 79  VIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVK 137
           ++ + A WCG  K I P +++ AA Y      +K+DVD  P  A  ++++ + PT ++ K
Sbjct: 24  LVDFWATWCGTSKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSI-PTLIVFK 82
Query: 138 RGKEIDRVVGAKKDE 152
            G+ +D+VVG +  E
Sbjct: 83  DGQPVDKVVGFQPKE 97

>pdb|1THX|A Chain A, Thioredoxin-2 Length = 115

Iteration: 1
 Score = 49.7 bits (117), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 46/78 (58%), Gaps = 3/78 (3%)
Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLV 136
           V++Y+ A+WCGPC+ + P +   A  Y+D ++ +K+++D  P   K +  ++ +P   LV
Sbjct: 28  VLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPTTVKKYK-VEGVPALRLV 86
Query: 137 KRGKEIDRVVGA-KKDEL 153
           K  + +D   G   KD+L
Sbjct: 87  KGEQILDSTEGVISKDKL 104

>pdb|2CVK|A Chain A, Crystal Structure Of Thermus Thermophilus Thioredoxin Length = 110

Iteration: 1
 Score = 49.7 bits (117), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 3/84 (3%)
Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFI-KIDVDWLPEAAKAFDLIDVLPTFVLV 136
           V++ + A WC PC+ I P +++ A  Y     + K+DVD  P+ A  + +  + PT +L 
Sbjct: 22  VLVDFWAEWCAPCRXIAPILEEIAKEYEGKLLVAKLDVDENPKTAXRYRVXSI-PTVILF 80
Query: 137 KRGKEIDRVVGAK-KDELQMKTEK 159
           K G+ ++ +VGA+ K   Q K EK
Sbjct: 81  KDGQPVEVLVGAQPKRNYQAKIEK 104

>pdb|2YZU|A Chain A, Crystal Structure Of Oxidized Thioredoxin From Thermus Thermophilus Hb8 Length = 109

Iteration: 1
 Score = 49.7 bits (117), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 3/84 (3%)
Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFI-KIDVDWLPEAAKAFDLIDVLPTFVLV 136
           V++ + A WC PC+ I P +++ A  Y     + K+DVD  P+ A  + +  + PT +L 
Sbjct: 21  VLVDFWAEWCAPCRXIAPILEEIAKEYEGKLLVAKLDVDENPKTAXRYRVXSI-PTVILF 79
Query: 137 KRGKEIDRVVGAK-KDELQMKTEK 159
           K G+ ++ +VGA+ K   Q K EK
Sbjct: 80  KDGQPVEVLVGAQPKRNYQAKIEK 103

>pdb|2YJ7|A Chain A, Crystal Structure Of A Hyperstable Protein From The Precambrian Period Length = 106

Iteration: 1
 Score = 49.7 bits (117), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 47/76 (61%), Gaps = 2/76 (2%)
Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLV 136
           V++ + A WCGPC+ I P +++ A  Y   V+ +K++VD  P  A  +  I  +PT +L 
Sbjct: 22  VLVDFWAPWCGPCRMIAPIIEELAKEYEGKVKVVKVNVDENPNTAAQYG-IRSIPTLLLF 80
Query: 137 KRGKEIDRVVGAKKDE 152
           K G+ +DR+VGA+  E
Sbjct: 81  KNGQVVDRLVGAQPKE 96

>pdb|3HHV|A Chain A, The Crystal Structure Of The Thioredoxin A2 From Sulfolobus Solfataricus Length = 110

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 48/80 (60%), Gaps = 2/80 (2%)
Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVK 137
           VV+ + A WC PC  + P +++ A  Y  V F K++ +   + A  + ++  LPT +  K
Sbjct: 26  VVVDFWAEWCAPCLILAPVIEELANDYPQVAFGKLNTEESQDIAMRYGIMS-LPTIMFFK 84
Query: 138 RGKEIDRVVGA-KKDELQMK 156
            G+ +D+++GA  ++E++++
Sbjct: 85  NGELVDQILGAVPREEIEVR 104

>pdb|2GZY|A Chain A, Solution Structures Of The Reduced Form Of Thioredoxin From Bacillus Subtilis Length = 104

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 78  VVIYYTAAWCGPCKFIEPYVKDF-AAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLV 136
           V+  + A WCGPCK I P +++    M   ++ +KIDVD   E A  + ++ + PT +++
Sbjct: 20  VLADFWAPWCGPCKMIAPVLEELDQEMGDKLKIVKIDVDENQETAGKYGVMSI-PTLLVL 78
Query: 137 KRGKEIDRVVGAKKDE 152
           K G+ ++  VG K  E
Sbjct: 79  KDGEVVETSVGFKPKE 94

>pdb|3P2A|A Chain A, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis Length = 148

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 76  LKVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFV 134
           L  VI + A WCGPC+   P   + AA     V+F+K++ +  P  +  F  I  +PT  
Sbjct: 56  LPXVIDFWAPWCGPCRSFAPIFAETAAERAGKVRFVKVNTEAEPALSTRF-RIRSIPTIX 114
Query: 135 LVKRGKEIDRVVGA 148
           L + GK ID + GA
Sbjct: 115 LYRNGKXIDXLNGA 128

>pdb|1EP8|A Chain A, Crystal Structure Of A Mutated Thioredoxin, D30a, From Chlamydomonas Reinhardtii Length = 112

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLV 136
           +V+ +TA WCGPCK I P  +  +  Y   V F+K+DVD +   A+A   I  +PTF + 
Sbjct: 27  IVVAFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEAAG-ITAMPTFHVY 85
Query: 137 KRGKEIDRVVGAKKDELQMKTEKR 160
           K G + D +VGA +D+L+    K 
Sbjct: 86  KDGVKADDLVGASQDKLKALVAKH 109

>pdb|1GL8|A Chain A, Solution Structure Of Thioredoxin M From Spinach, Oxidized Form Length = 104

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 76  LKVVIYYTAAWCGPCKFIEPYVKDFAAMYT-DVQFIKIDVDWLPEAAKAFDLIDVLPTFV 134
           + V++ + A WCGPCK I P + + A  Y+  +   K++ D  P  A  ++ I  +PT +
Sbjct: 18  VPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYN-IRSIPTVL 76
Query: 135 LVKRGKEIDRVVGA 148
             K G+  + ++GA
Sbjct: 77  FFKNGERKESIIGA 90

>pdb|1FB0|A Chain A, Crystal Structure Of Thioredoxin M From Spinach Chloroplast (Reduced Form) Length = 105

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 76  LKVVIYYTAAWCGPCKFIEPYVKDFAAMYT-DVQFIKIDVDWLPEAAKAFDLIDVLPTFV 134
           + V++ + A WCGPCK I P + + A  Y+  +   K++ D  P  A  ++ I  +PT +
Sbjct: 19  VPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYN-IRSIPTVL 77
Query: 135 LVKRGKEIDRVVGA 148
             K G+  + ++GA
Sbjct: 78  FFKNGERKESIIGA 91

>pdb|2PU9|C Chain C, Crystal Srtucture Of The Binary Complex Between Ferredoxin: Thioredoxin Reductase And Thioredoxin F Length = 111

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 42/85 (49%)
Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVK 137
           VV+     WCGP K + P  +  A  Y DV F+K+D +   +       I V+PTF ++K
Sbjct: 27  VVLDMFTQWCGPSKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRVVPTFKILK 86
Query: 138 RGKEIDRVVGAKKDELQMKTEKRRN 162
               +  V GAK D+L    +  R+
Sbjct: 87  ENSVVGEVTGAKYDKLLEAIQAARS 111

>pdb|1V98|A Chain A, Crystal Structure Analysis Of Thioredoxin From Thermus Thermophilus Length = 140

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 79  VIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVK 137
           ++ + A WCGPC+ + P +++ A  +   ++ +K++VD  P  A  + +  V PT VL +
Sbjct: 54  LVDFFAPWCGPCRLVSPILEELARDHAGRLKVVKVNVDEHPGLAARYGVRSV-PTLVLFR 112
Query: 138 RGKEIDRVVGA 148
           RG  +   VGA
Sbjct: 113 RGAPVATWVGA 123

>pdb|1EP7|A Chain A, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas Reinhardtii Length = 112

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLV 136
           +V+ +TA WCGPCK I P  +  +  Y   V F+K+DVD +   A+A   I  +PTF + 
Sbjct: 27  IVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEAAG-ITAMPTFHVY 85
Query: 137 KRGKEIDRVVGAKKDELQMKTEKR 160
           K G + D +VGA +D+L+    K 
Sbjct: 86  KDGVKADDLVGASQDKLKALVAKH 109

>pdb|2IPA|A Chain A, Solution Structure Of Trx-Arsc Complex Length = 104

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 78  VVIYYTAAWCGPCKFIEPYVKDF-AAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLV 136
           V+  + A WCGP K I P +++    M   ++ +KIDVD   E A  + ++ + PT +++
Sbjct: 20  VLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDENQETAGKYGVMSI-PTLLVL 78
Query: 137 KRGKEIDRVVGAKKDE 152
           K G+ ++  VG K  E
Sbjct: 79  KDGEVVETSVGFKPKE 94

>pdb|2VOC|A Chain A, Thioredoxin A Active Site Mutants Form Mixed Disulfide Dimers That Resemble Enzyme-substrate Reaction Intermediate Length = 112

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 78  VVIYYTAAWCGPCKFIEPYVKDF-AAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLV 136
           V+  + A WCGP K I P +++    M   ++ +KIDVD   E A  + ++ + PT +++
Sbjct: 20  VLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDENQETAGKYGVMSI-PTLLVL 78
Query: 137 KRGKEIDRVVGAKKDE 152
           K G+ ++  VG K  E
Sbjct: 79  KDGEVVETSVGFKPKE 94

>pdb|2H6Z|A Chain A, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLV 136
           +++ + A WCGPCK I P + D A  Y   +   K+++D  P  A  +  I  +PT +L 
Sbjct: 23  ILVDFWAEWCGPCKMIAPILDDIADEYQGKLTVAKLNIDQNPGTAPKYG-IRGIPTLLLF 81
Query: 137 KRGKEIDRVVGA 148
           K G+     VGA
Sbjct: 82  KNGEVAATKVGA 93

>pdb|2PUK|C Chain C, Crystal Srtucture Of The Binary Complex Between Ferredoxin: Thioredoxin Reductase And Thioredoxin M Length = 106

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 76  LKVVIYYTAAWCGPCKFIEPYVKDFAAMYT-DVQFIKIDVDWLPEAAKAFDLIDVLPTFV 134
           + V++ + A WCGP K I P + + A  Y+  +   K++ D  P  A  ++ I  +PT +
Sbjct: 19  VPVMVDFWAPWCGPSKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYN-IRSIPTVL 77
Query: 135 LVKRGKEIDRVVGA 148
             K G+  + ++GA
Sbjct: 78  FFKNGERKESIIGA 91

>pdb|2H73|A Chain A, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLV 136
           +++ + A WCGPCK I P +++ A  Y   +   K+++D  P  A  +  I  +PT +L 
Sbjct: 23  ILVDFWAEWCGPCKMIAPILEEIADEYQGKLTVAKLNIDQNPGTAPKYG-IRGIPTLLLF 81
Query: 137 KRGKEIDRVVGA 148
           K G+     VGA
Sbjct: 82  KNGEVAATKVGA 93

>pdb|2H71|A Chain A, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLV 136
           +++ + A WCGPCK I P + + A  Y   +   K+++D  P  A  +  I  +PT +L 
Sbjct: 23  ILVDFWAEWCGPCKMIAPILDEIAEEYQGKLTVAKLNIDQNPGTAPKYG-IRGIPTLLLF 81
Query: 137 KRGKEIDRVVGA 148
           K G+     VGA
Sbjct: 82  KNGEVAATKVGA 93

>pdb|2FCH|A Chain A, Crystal Structure Of Thioredoxin Mutant G74s Length = 108

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLV 136
           +++ + A WCGPCK I P + + A  Y   +   K+++D  P  A  +  I  +PT +L 
Sbjct: 23  ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYG-IRSIPTLLLF 81
Query: 137 KRGKEIDRVVGA 148
           K G+     VGA
Sbjct: 82  KNGEVAATKVGA 93

>pdb|3DXB|A Chain A, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin Length = 222

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLV 136
           +++ + A WCGPCK I P + + A  Y   +   K+++D  P  A  +  I  +PT +L 
Sbjct: 33  ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYG-IRGIPTLLLF 91
Query: 137 KRGKEIDRVVGA 148
           K G+     VGA
Sbjct: 92  KNGEVAATKVGA 103

>pdb|3HXS|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp Length = 141

Iteration: 1
 Score = 43.1 bits (100), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFI-KIDVDWLPEAAKAFDLIDVLPTFVLV 136
            ++ + A WCGPCK + P +++ +  Y    +I K++VD  PE A+ F  I  +PT   V
Sbjct: 54  AIVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDKEPELARDFG-IQSIPTIWFV 112
Query: 137 KRGKEIDRVVGA 148
               E    +GA
Sbjct: 113 PMKGEPQVNMGA 124

>pdb|2H76|A Chain A, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLV 136
           +++ + A WCGPCK I P + + A  Y   +   K+++D  P  A  +  I  +PT +L 
Sbjct: 23  ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYG-IRGIPTLLLF 81
Query: 137 KRGKEIDRVVGA 148
           K G+     VGA
Sbjct: 82  KNGEVAATKVGA 93

>pdb|2H75|A Chain A, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLV 136
           +++ + A WCGPCK I P + + A  Y   +   K+++D  P  A  +  I  +PT +L 
Sbjct: 23  ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYG-IRGIPTLLLF 81
Query: 137 KRGKEIDRVVGA 148
           K G+     VGA
Sbjct: 82  KNGEVAATKVGA 93

>pdb|2H70|A Chain A, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLV 136
           +++ + A WCGPCK I P + + A  Y   +   K+++D  P  A  +  I  +PT +L 
Sbjct: 23  ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYG-IRGIPTLLLF 81
Query: 137 KRGKEIDRVVGA 148
           K G+     VGA
Sbjct: 82  KNGEVAATKVGA 93

>pdb|2H74|A Chain A, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLV 136
           +++ + A WCGPCK I P + + A  Y   +   K+++D  P  A  +  I  +PT +L 
Sbjct: 23  ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYG-IRGIPTLLLF 81
Query: 137 KRGKEIDRVVGA 148
           K G+     VGA
Sbjct: 82  KNGEVAATKVGA 93

>pdb|1XOB|A Chain A, Thioredoxin (Reduced Dithio Form), Nmr, 20 Structures Length = 108

Iteration: 1
 Score = 42.7 bits (99), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLV 136
           +++ + A WCGPCK I P + + A  Y   +   K+++D  P  A  +  I  +PT +L 
Sbjct: 23  ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYG-IRGIPTLLLF 81
Query: 137 KRGKEIDRVVGA 148
           K G+     VGA
Sbjct: 82  KNGEVAATKVGA 93

>pdb|2EIO|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And Multimers Through Analysis Of Crystal Contacts Length = 108

Iteration: 1
 Score = 42.7 bits (99), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLV 136
           +++ + A WCGPCK I P + + A  Y   +   K+++D  P  A  +  I  +PT +L 
Sbjct: 23  ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYG-IRGIPTLLLF 81
Query: 137 KRGKEIDRVVGA 148
           K G+     VGA
Sbjct: 82  KNGEVAATKVGA 93

>pdb|2TRX|A Chain A, Crystal Structure Of Thioredoxin From Escherichia Coli At 1.68 Angstroms Resolution Length = 108

Iteration: 1
 Score = 42.7 bits (99), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLV 136
           +++ + A WCGPCK I P + + A  Y   +   K+++D  P  A  +  I  +PT +L 
Sbjct: 23  ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYG-IRGIPTLLLF 81
Query: 137 KRGKEIDRVVGA 148
           K G+     VGA
Sbjct: 82  KNGEVAATKVGA 93

>pdb|2EIR|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And Multimers Through Analysis Of Crystal Contacts Length = 108

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLV 136
           +++ + A WCGPCK I P + + A  Y   +   K+++D  P  A  +  I  +PT +L 
Sbjct: 23  ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYG-IRGIPTLLLF 81
Query: 137 KRGKEIDRVVGA 148
           K G+     VGA
Sbjct: 82  KNGEVAATKVGA 93

>pdb|1ZZY|A Chain A, Crystal Structure Of Thioredoxin Mutant L7v Length = 108

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLV 136
           +++ + A WCGPCK I P + + A  Y   +   K+++D  P  A  +  I  +PT +L 
Sbjct: 23  ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYG-IRGIPTLLLF 81
Query: 137 KRGKEIDRVVGA 148
           K G+     VGA
Sbjct: 82  KNGEVAATKVGA 93

>pdb|3HYP|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp_s105g Mutant Length = 141

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFI-KIDVDWLPEAAKAFDLIDVLPTFVLV 136
            ++ + A WCGPCK + P +++ +  Y    +I K++VD  PE A+ F  I  +PT   V
Sbjct: 54  AIVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDKEPELARDFG-IQGIPTIWFV 112
Query: 137 KRGKEIDRVVGA 148
               E    +GA
Sbjct: 113 PMKGEPQVNMGA 124

>pdb|3D6I|A Chain A, Structure Of The Thioredoxin-Like Domain Of Yeast Glutaredoxin 3 Length = 112

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/109 (23%), Positives = 50/109 (45%), Gaps = 9/109 (8%)
Query: 62  VLNINDGGNVVFWVLK------VVIYYTAAWCGPCKFIEPYVKDFA--AMYTDVQFIKID 113
           V+ IND     +          +V+Y+  +W  PCK ++   +  +     ++V F+ ID
Sbjct: 2   VIEINDQEQFTYLTTTAAGDKLIVLYFHTSWAEPCKALKQVFEAISNEPSNSNVSFLSID 61
Query: 114 VDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQMKTEKRRN 162
            D   E ++ F+ I  +P F+++ +G  +  + GA   E     E  +N
Sbjct: 62  ADENSEISELFE-ISAVPYFIIIHKGTILKELSGADPKEYVSLLEDXKN 109

>pdb|2H6Y|A Chain A, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLV 136
           +++ + A WCGPCK I P + + A  Y   +   K+++D  P  A  +  I  +PT +L 
Sbjct: 23  ILVDFWAEWCGPCKMIAPILDEIADDYQGKLTVAKLNIDQNPGTAPKYG-IRGIPTLLLF 81
Query: 137 KRGKEIDRVVGA 148
           K G+     VGA
Sbjct: 82  KNGEVAATKVGA 93

>pdb|2H72|A Chain A, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLV 136
           +++ + A WCGPCK I P + + A  Y   +   K+++D  P  A  +  I  +PT +L 
Sbjct: 23  ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYG-IRGIPTLLLF 81
Query: 137 KRGKEIDRVVGA 148
           K G      VGA
Sbjct: 82  KNGDVAATKVGA 93

>pdb|3DYR|A Chain A, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In Its Oxidized Form Length = 111

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLV 136
           +++ + A WCGPCK I P + + A  Y   +   K+++D  P  A  +  I   PT +L 
Sbjct: 24  ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYG-IRGTPTLLLF 82
Query: 137 KRGKEIDRVVGA 148
           K G+     VGA
Sbjct: 83  KNGEVAATKVGA 94

>pdb|2EIQ|A Chain A, Design Of Disulfide-linked Thioredoxin Dimers And Multimers Through Analysis Of Crystal Contacts Length = 108

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLV 136
           +++ + A WCGPCK I P + + A  Y   +   K+++D  P  A  +  I  +PT +L 
Sbjct: 23  ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYG-IRGIPTLLLF 81
Query: 137 KRGKEIDRVVGA 148
           K G+     VGA
Sbjct: 82  KNGEVAACKVGA 93

>pdb|2TIR|A Chain A, Crystal Structure Analysis Of A Mutant Escherichia Coli Thioredoxin In Which Lysine 36 Is Replaced By Glutamic Acid Length = 108

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLV 136
           +++ + A WCGPC+ I P + + A  Y   +   K+++D  P  A  +  I  +PT +L 
Sbjct: 23  ILVDFWAEWCGPCEMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYG-IRGIPTLLLF 81
Query: 137 KRGKEIDRVVGA 148
           K G+     VGA
Sbjct: 82  KNGEVAATKVGA 93

>pdb|1SRX|A Chain A, Three-Dimensional Structure Of Escherichia Coli Thioredoxin-S2 To 2.8 Angstroms Resolution Length = 108

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLV 136
           +++ + A WCGPCK I P + + A  Y   +   K+++D  P  A  + +   +PT +L 
Sbjct: 23  ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKY-IERGIPTLLLF 81
Query: 137 KRGKEIDRVVGA 148
           K G+     VGA
Sbjct: 82  KNGEVAATKVGA 93

>pdb|1GH2|A Chain A, Crystal Structure Of The Catalytic Domain Of A New Human Thioredoxin-Like Protein Length = 107

Iteration: 1
 Score = 40.4 bits (93), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVK 137
            V+ +T   CGPC  I P     +  Y    F+++DV    +   A + I   PTF   +
Sbjct: 24  AVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQC-QGTAATNNISATPTFQFFR 82
Query: 138 RGKEIDRVVGAKKDELQMKTEK 159
               ID+  GA    L+ K ++
Sbjct: 83  NKVRIDQYQGADAVGLEEKIKQ 104

>pdb|1KEB|A Chain A, Crystal Structure Of Double Mutant M37l,P40s E.Coli Thioredoxin Length = 108

Iteration: 1
 Score = 39.7 bits (91), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLV 136
           +++ + A WCGPCK I   + + A  Y   +   K+++D  P  A  +  I  +PT +L 
Sbjct: 23  ILVDFWAEWCGPCKLIASILDEIADEYQGKLTVAKLNIDQNPGTAPKYG-IRGIPTLLLF 81
Query: 137 KRGKEIDRVVGA 148
           K G+     VGA
Sbjct: 82  KNGEVAATKVGA 93

>pdb|2O8V|B Chain B, Paps Reductase In A Covalent Complex With Thioredoxin C35a Length = 128

Iteration: 1
 Score = 39.7 bits (91), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLV 136
           +++ + A WCGP K I P + + A  Y   +   K+++D  P  A  +  I  +PT +L 
Sbjct: 43  ILVDFWAEWCGPAKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYG-IRGIPTLLLF 101
Query: 137 KRGKEIDRVVGA 148
           K G+     VGA
Sbjct: 102 KNGEVAATKVGA 113

>pdb|3TCO|A Chain A, Crystallographic And Spectroscopic Characterization Of Sulfolobus Solfataricus Trxa1 Provide Insights Into The Determinants Of Thioredoxin Fold Stability Length = 109

Iteration: 1
 Score = 39.7 bits (91), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 84  AAWCGPCKFIEPYVKDFAAMYT-DVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEI 142
           A WC PC   EP  K  A  Y     F +++VD   + A  + ++++ PT ++   G+ +
Sbjct: 30  AEWCAPCHLYEPIYKKVAEKYKGKAVFGRLNVDENQKIADKYSVLNI-PTTLIFVNGQLV 88
Query: 143 DRVVGA 148
           D +VGA
Sbjct: 89  DSLVGA 94

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	162
1ti3_A	113	Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul	1e-30
2vlu_A	122	Thioredoxin, thioredoxin H isoform 2.; oxidoreduct	2e-30
1xfl_A	124	Thioredoxin H1; AT3G51030, structural genomics, pr	3e-30
1wmj_A	130	Thioredoxin H-type; structural genomics, program f	4e-30
2vm1_A	118	Thioredoxin, thioredoxin H isoform 1.; oxidoreduct	5e-30
2wz9_A	153	Glutaredoxin-3; protein binding; 1.55A {Homo sapie	2e-29
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	4e-29
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	4e-29
3d22_A	139	TRXH4, thioredoxin H-type; electron transport, cyt	5e-29
2vim_A	104	Thioredoxin, TRX; thioredoxin fold, oxidoreductase	8e-29
1syr_A	112	Thioredoxin; SGPP, structural genomics, PSI, prote	1e-28
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	1e-28
2oe3_A	114	Thioredoxin-3; electron transport, alpha/beta sand	3e-28
3f3q_A	109	Thioredoxin-1; His TAG, electron transport, cytopl	9e-28
1r26_A	125	Thioredoxin; redox-active disulfide, electron tran	1e-27
1ep7_A	112	Thioredoxin CH1, H-type; electron transport; 2.10A	2e-27
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	1e-26
1xwb_A	106	Thioredoxin; dimerization, redox regulation, THI X	4e-26
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	5e-26
2pu9_C	111	TRX-F, thioredoxin F-type, chloroplast; protein-pr	3e-25
1faa_A	124	Thioredoxin F; electron transport; 1.85A {Spinacia	3e-25
2f51_A	118	Thioredoxin; electron transport; 1.90A {Trichomona	5e-25
3cxg_A	133	Putative thioredoxin; malaria, structural GEN oxid	2e-24
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	2e-22
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	2e-22
2l6c_A	110	Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu	1e-18
2dj0_A	137	Thioredoxin-related transmembrane protein 2; AVLA2	1e-15
2e0q_A	104	Thioredoxin; electron transport; 1.49A {Sulfolobus	1e-15
2l57_A	126	Uncharacterized protein; structural genomics, unkn	2e-15
2es7_A	142	Q8ZP25_salty, putative thiol-disulfide isomerase a	2e-15
3ul3_B	128	Thioredoxin, thioredoxin-2; PTEX, oxidoreductase;	4e-15
3evi_A	118	Phosducin-like protein 2; alpha beta, 3-layer(ABA)	4e-15
3gix_A	149	Thioredoxin-like protein 4B; PRE-mRNA splicing, TX	8e-15
2l5l_A	136	Thioredoxin; structural genomics, electron transpo	9e-15
2ppt_A	155	Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc	1e-14
3emx_A	135	Thioredoxin; structural genomics, oxidoreductase,	1e-14
3p2a_A	148	Thioredoxin 2, putative thioredoxin-like protein;	2e-14
1v98_A	140	Thioredoxin; oxidoreductase, structural genomics,	2e-14
2dbc_A	135	PDCL2, unnamed protein product; phosducin-like pro	2e-14
3hz4_A	140	Thioredoxin; NYSGXRC, PSI-II, reduced form, protei	3e-14
3hxs_A	141	Thioredoxin, TRXP; electron transport; 2.00A {Bact	3e-14
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	4e-14
1w4v_A	119	Thioredoxin, mitochondrial; antioxidant enzyme, mi	7e-14
1a0r_P	245	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	9e-14
2yzu_A	109	Thioredoxin; redox protein, electron transport, st	1e-13
3die_A	106	Thioredoxin, TRX; electron transport, SWAP domain,	2e-13
1thx_A	115	Thioredoxin, thioredoxin 2; oxido-reductase, elect	3e-13
1nsw_A	105	Thioredoxin, TRX; thermostability, electron transp	3e-13
2i1u_A	121	Thioredoxin, TRX, MPT46; redox protein, electron t	3e-13
2voc_A	112	Thioredoxin; electron transport, homodimer, disulf	4e-13
2i4a_A	107	Thioredoxin; acidophIle, disulfide exchange, oxido	4e-13
3gnj_A	111	Thioredoxin domain protein; APC92103, STR genomics	6e-13
1t00_A	112	Thioredoxin, TRX; redox regulation, multifunction	8e-13
1fb6_A	105	Thioredoxin M; electron transport; 2.10A {Spinacia	1e-12
2o8v_B	128	Thioredoxin 1; disulfide crosslinked complex, oxid	1e-12
2yj7_A	106	LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti	1e-12
1dby_A	107	Chloroplast thioredoxin M CH2; thioredoxin CH2, ch	1e-12
2kuc_A	130	Putative disulphide-isomerase; structural genomics	2e-12
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	3e-12
2trx_A	108	Thioredoxin; electron transport; 1.68A {Escherichi	3e-12
2trc_P	217	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	1e-11
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	5e-11
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	9e-11
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	1e-10
3dml_A	116	Putative uncharacterized protein; thioredoxin, oxi	5e-10
3aps_A	122	DNAJ homolog subfamily C member 10; thioredoxin fo	4e-09
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	2e-08
1sen_A	164	Thioredoxin-like protein P19; endoplasmic reticulu	3e-08
1oaz_A	123	Thioredoxin 1; immune system, antibody/complex, an	3e-08
1nho_A	85	Probable thioredoxin; beta sheet, alpha helix, oxi	8e-08
1zma_A	118	Bacterocin transport accessory protein; alpha-beta	4e-07
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	4e-07
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	3e-04
2lja_A	152	Putative thiol-disulfide oxidoreductase; structura	2e-06
1lu4_A	136	Soluble secreted antigen MPT53; thioredoxin-like f	5e-06
1z6n_A	167	Hypothetical protein PA1234; alpha-beta-alpha sand	5e-06
2lst_A	130	Thioredoxin; structural genomics, NEW YORK structu	1e-05
3gl3_A	152	Putative thiol:disulfide interchange protein DSBE;	1e-05
3or5_A	165	Thiol:disulfide interchange protein, thioredoxin p	2e-05
3fk8_A	133	Disulphide isomerase; APC61824.1, xylella fastidio	2e-05
3s9f_A	165	Tryparedoxin; thioredoxin fold, disulfide reductas	2e-05
2lrn_A	152	Thiol:disulfide interchange protein; structural ge	2e-05
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	3e-05
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	4e-05
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	1e-04
1x5e_A	126	Thioredoxin domain containing protein 1; TMX, TXND	4e-05
3lwa_A	183	Secreted thiol-disulfide isomerase; thioredoxin, P	5e-05
2f9s_A	151	Thiol-disulfide oxidoreductase RESA; thioredoxin-l	6e-05
1wou_A	123	Thioredoxin -related protein, 14 kDa; electron tra	6e-05
3fkf_A	148	Thiol-disulfide oxidoreductase; structural genomic	7e-05
1jfu_A	186	Thiol:disulfide interchange protein TLPA; thioredo	7e-05
3raz_A	151	Thioredoxin-related protein; structural genomics,	8e-05
3ha9_A	165	Uncharacterized thioredoxin-like protein; PSI, MCS	8e-05
3hdc_A	158	Thioredoxin family protein; ATCC53774, DSM 7210, ,	1e-04
1zzo_A	136	RV1677; thioredoxin fold, structural genomics, PSI	1e-04
1i5g_A	144	Tryparedoxin II; electron transport; HET: TS5; 1.4	2e-04
2dj3_A	133	Protein disulfide-isomerase A4; protein ERP-72, ER	2e-04
2lrt_A	152	Uncharacterized protein; structural genomics, thio	2e-04
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	2e-04
3hcz_A	148	Possible thiol-disulfide isomerase; APC61559.2, cy	2e-04
3ewl_A	142	Uncharacterized conserved protein BF1870; alpha-be	3e-04
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	3e-04
1o8x_A	146	Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot	3e-04
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	5e-04
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	5e-04
2l5o_A	153	Putative thioredoxin; structural genomics, unknown	5e-04
2h30_A	164	Thioredoxin, peptide methionine sulfoxide reductas	5e-04
2lus_A	143	Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci	5e-04
2hyx_A	352	Protein DIPZ; thioredoxin fold, jelly-roll, struct	6e-04
3kcm_A	154	Thioredoxin family protein; SGX, thioredoxin prote	6e-04
3fw2_A	150	Thiol-disulfide oxidoreductase; structural genomic	7e-04
1o73_A	144	Tryparedoxin; electron transport, trypanosomatid,	8e-04
3erw_A	145	Sporulation thiol-disulfide oxidoreductase A; thio	8e-04
3ia1_A	154	THIO-disulfide isomerase/thioredoxin; oxidoreducta	8e-04
3eur_A	142	Uncharacterized protein; PSI2,MCSG, conserved prot	9e-04
2djj_A	121	PDI, protein disulfide-isomerase; thioredoxin fold	9e-04

>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1 Length = 113

 Score =  106 bits (267), Expect = 1e-30
 Identities = 39/138 (28%), Positives = 63/138 (45%), Gaps = 34/138 (24%)

Query: 22  VMELQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIY 81
           V+   +   W+  +E  K S +L                                 +V+ 
Sbjct: 6   VIACHTVDTWKEHFEKGKGSQKL---------------------------------IVVD 32

Query: 82  YTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKE 141
           +TA+WC PCK I P   + A  + +V F+K+DVD L   A+ ++ ++ +PTF+ +K GK 
Sbjct: 33  FTASWCPPCKMIAPIFAELAKKFPNVTFLKVDVDELKAVAEEWN-VEAMPTFIFLKDGKL 91

Query: 142 IDRVVGAKKDELQMKTEK 159
           +D+ VGA KD L     K
Sbjct: 92  VDKTVGADKDGLPTLVAK 109

>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A* Length = 122

 Score =  105 bits (264), Expect = 2e-30
 Identities = 43/138 (31%), Positives = 63/138 (45%), Gaps = 34/138 (24%)

Query: 22  VMELQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIY 81
           V+ + S  QW  Q E +  + +LV                                 VI 
Sbjct: 14  VISVHSLEQWTMQIEEANTAKKLV---------------------------------VID 40

Query: 82  YTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKE 141
           +TA+WCGPC+ + P   D A  + +  F+K+DVD L   A+ F  ++ +PTF+ +K G  
Sbjct: 41  FTASWCGPCRIMAPVFADLAKKFPNAVFLKVDVDELKPIAEQFS-VEAMPTFLFMKEGDV 99

Query: 142 IDRVVGAKKDELQMKTEK 159
            DRVVGA K+EL  K   
Sbjct: 100 KDRVVGAIKEELTAKVGL 117

>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1 Length = 124

 Score =  105 bits (264), Expect = 3e-30
 Identities = 40/82 (48%), Positives = 54/82 (65%), Gaps = 1/82 (1%)

Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVK 137
           VV+ +TA+WCGPC+FI P+  D A    +V F+K+D D L   A  +  I  +PTF+ +K
Sbjct: 41  VVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKVDTDELKSVASDWA-IQAMPTFMFLK 99

Query: 138 RGKEIDRVVGAKKDELQMKTEK 159
            GK +D+VVGAKKDELQ    K
Sbjct: 100 EGKILDKVVGAKKDELQSTIAK 121

>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa} Length = 130

 Score =  105 bits (264), Expect = 4e-30
 Identities = 37/82 (45%), Positives = 57/82 (69%), Gaps = 1/82 (1%)

Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVK 137
           V+I +TA+WCGPC+FI P   ++A  +    F+K+DVD L E A+ ++ ++ +PTF+ +K
Sbjct: 39  VIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDVDELKEVAEKYN-VEAMPTFLFIK 97

Query: 138 RGKEIDRVVGAKKDELQMKTEK 159
            G E D+VVGA+KD+LQ    K
Sbjct: 98  DGAEADKVVGARKDDLQNTIVK 119

>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A Length = 118

 Score =  104 bits (262), Expect = 5e-30
 Identities = 32/82 (39%), Positives = 56/82 (68%), Gaps = 1/82 (1%)

Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVK 137
           V+I +TA+WCGPC+ I P   ++A  +    F+K+DVD L + A+A++ ++ +PTF+ +K
Sbjct: 31  VIIDFTASWCGPCRVIAPVFAEYAKKFPGAIFLKVDVDELKDVAEAYN-VEAMPTFLFIK 89

Query: 138 RGKEIDRVVGAKKDELQMKTEK 159
            G+++D VVG +KD++  K   
Sbjct: 90  DGEKVDSVVGGRKDDIHTKIVA 111

>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A Length = 153

 Score =  104 bits (261), Expect = 2e-29
 Identities = 23/82 (28%), Positives = 46/82 (56%), Gaps = 1/82 (1%)

Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVK 137
           +V+++ A W   C  +   + + A     V F+K++ + +PE ++ ++ I  +PTF+  K
Sbjct: 35  LVVHFWAPWAPQCAQMNEVMAELAKELPQVSFVKLEAEGVPEVSEKYE-ISSVPTFLFFK 93

Query: 138 RGKEIDRVVGAKKDELQMKTEK 159
             ++IDR+ GA   EL  K ++
Sbjct: 94  NSQKIDRLDGAHAPELTKKVQR 115

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C* Length = 116

 Score =  102 bits (256), Expect = 4e-29
 Identities = 26/82 (31%), Positives = 49/82 (59%), Gaps = 1/82 (1%)

Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVK 137
           VV+ ++A WCGP K I+P+    +  Y++V F+++DVD   + A   + +  +PTF   K
Sbjct: 34  VVVDFSATWCGPSKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECE-VKSMPTFQFFK 92

Query: 138 RGKEIDRVVGAKKDELQMKTEK 159
           +G+++    GA K++L+    +
Sbjct: 93  KGQKVGEFSGANKEKLEATINE 114

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ... Length = 105

 Score =  101 bits (255), Expect = 4e-29
 Identities = 27/82 (32%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVK 137
           VV+ ++A WCGPCK I+P+    +  Y++V F+++DVD   + A   + +  +PTF   K
Sbjct: 23  VVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASESE-VKSMPTFQFFK 81

Query: 138 RGKEIDRVVGAKKDELQMKTEK 159
           +G+++    GA K++L+    +
Sbjct: 82  KGQKVGEFSGANKEKLEATINE 103

>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A Length = 139

 Score =  102 bits (257), Expect = 5e-29
 Identities = 29/82 (35%), Positives = 49/82 (59%), Gaps = 1/82 (1%)

Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVK 137
           V+  ++A WCGP + I PY  + +  Y  + F+ IDVD L + + +++ I   PTF  ++
Sbjct: 49  VLANFSARWCGPSRQIAPYYIELSENYPSLMFLVIDVDELSDFSASWE-IKATPTFFFLR 107

Query: 138 RGKEIDRVVGAKKDELQMKTEK 159
            G+++D++VGA K EL  K   
Sbjct: 108 DGQQVDKLVGANKPELHKKITA 129

>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica} Length = 104

 Score =  101 bits (253), Expect = 8e-29
 Identities = 33/82 (40%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVK 137
           +V+ + A WCGPC+ I P V+  A    +V+F K+DVD   EAA  +  +  +PTFV +K
Sbjct: 22  IVVDFFAQWCGPCRNIAPKVEALAKEIPEVEFAKVDVDQNEEAAAKYS-VTAMPTFVFIK 80

Query: 138 RGKEIDRVVGAKKDELQMKTEK 159
            GKE+DR  GA + +L+    +
Sbjct: 81  DGKEVDRFSGANETKLRETITR 102

>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1 Length = 112

 Score =  101 bits (253), Expect = 1e-28
 Identities = 31/82 (37%), Positives = 49/82 (59%), Gaps = 1/82 (1%)

Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVK 137
           V++ + A WCGPCK I P+ ++ +  YT + FIK+DVD + E  +  + I  +PTF + K
Sbjct: 29  VIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDEVSEVTEKEN-ITSMPTFKVYK 87

Query: 138 RGKEIDRVVGAKKDELQMKTEK 159
            G  +D ++GA    L+   EK
Sbjct: 88  NGSSVDTLLGANDSALKQLIEK 109

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1 Length = 107

 Score =  101 bits (253), Expect = 1e-28
 Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 1/82 (1%)

Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVK 137
            V+ +T   CGPC  I P     +  Y    F+++DV      A   + I   PTF   +
Sbjct: 24  AVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQCQGTAATNN-ISATPTFQFFR 82

Query: 138 RGKEIDRVVGAKKDELQMKTEK 159
               ID+  GA    L+ K ++
Sbjct: 83  NKVRIDQYQGADAVGLEEKIKQ 104

>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A Length = 114

 Score =  100 bits (250), Expect = 3e-28
 Identities = 32/82 (39%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVK 137
           +VI + A WCGPCK ++P++      Y DV+F+K DVD  P+ AK  + +  +PTFVL K
Sbjct: 33  LVIDFYATWCGPCKMMQPHLTKLIQAYPDVRFVKCDVDESPDIAKECE-VTAMPTFVLGK 91

Query: 138 RGKEIDRVVGAKKDELQMKTEK 159
            G+ I +++GA    L+   + 
Sbjct: 92  DGQLIGKIIGANPTALEKGIKD 113

>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B Length = 109

 Score = 98.9 bits (247), Expect = 9e-28
 Identities = 33/105 (31%), Positives = 51/105 (48%), Gaps = 4/105 (3%)

Query: 58  INEMVLNINDGGN---VVFWVLKVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDV 114
            + MV            +     VV+ + A WCGPCK I P ++ F+  Y    F K+DV
Sbjct: 4   HHHMVTQFKTASEFDSAIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQADFYKLDV 63

Query: 115 DWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQMKTEK 159
           D L + A+  + +  +PT +L K GKE+ +VVGA    ++     
Sbjct: 64  DELGDVAQKNE-VSAMPTLLLFKNGKEVAKVVGANPAAIKQAIAA 107

>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1 Length = 125

 Score = 99.0 bits (247), Expect = 1e-27
 Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 1/82 (1%)

Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVK 137
            V ++TA WCGPCK IE  ++  A  +  V+F K+D D   E       +  LPTF++ +
Sbjct: 40  TVAWFTAVWCGPCKTIERPMEKIAYEFPTVKFAKVDADNNSEIVSKCR-VLQLPTFIIAR 98

Query: 138 RGKEIDRVVGAKKDELQMKTEK 159
            GK +  V+GA    L+ K   
Sbjct: 99  SGKMLGHVIGANPGMLRQKLRD 120

>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A Length = 112

 Score = 98.2 bits (245), Expect = 2e-27
 Identities = 33/83 (39%), Positives = 49/83 (59%), Gaps = 2/83 (2%)

Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLV 136
           +V+ +TA WCGPCK I P  +  +  Y   V F+K+DVD +   A+A   I  +PTF + 
Sbjct: 27  IVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEAAG-ITAMPTFHVY 85

Query: 137 KRGKEIDRVVGAKKDELQMKTEK 159
           K G + D +VGA +D+L+    K
Sbjct: 86  KDGVKADDLVGASQDKLKALVAK 108

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae} Length = 112

 Score = 95.9 bits (239), Expect = 1e-26
 Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 3/84 (3%)

Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAA--MYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVL 135
           +V+Y+  +W  PCK ++   +  +     ++V F+ ID D   E ++ F+ I  +P F++
Sbjct: 24  IVLYFHTSWAEPCKALKQVFEAISNEPSNSNVSFLSIDADENSEISELFE-ISAVPYFII 82

Query: 136 VKRGKEIDRVVGAKKDELQMKTEK 159
           + +G  +  + GA   E     E 
Sbjct: 83  IHKGTILKELSGADPKEYVSLLED 106

>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A Length = 106

 Score = 94.6 bits (236), Expect = 4e-26
 Identities = 32/105 (30%), Positives = 54/105 (51%), Gaps = 7/105 (6%)

Query: 61  MVLNINDGGNVVFWVLK-----VVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDV 114
           MV  + D  ++   + K     VV+ + A WCGPCK I P + + +  + D V  +K+DV
Sbjct: 1   MVYQVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDV 60

Query: 115 DWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQMKTEK 159
           D   + A  ++ I  +PTFV +K G +++   GA    L+   + 
Sbjct: 61  DECEDIAMEYN-ISSMPTFVFLKNGVKVEEFAGANAKRLEDVIKA 104

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A Length = 117

 Score = 94.7 bits (236), Expect = 5e-26
 Identities = 33/82 (40%), Positives = 52/82 (63%), Gaps = 2/82 (2%)

Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVK 137
           VV+ + A WCGPCK I P  K+ +  Y D  F+K+DVD L E A+ ++ I  +PTF+ +K
Sbjct: 36  VVVDFFATWCGPCKTIAPLFKELSEKY-DAIFVKVDVDKLEETARKYN-ISAMPTFIAIK 93

Query: 138 RGKEIDRVVGAKKDELQMKTEK 159
            G+++  VVGA   +++   +K
Sbjct: 94  NGEKVGDVVGASIAKVEDMIKK 115

>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A Length = 111

 Score = 92.4 bits (230), Expect = 3e-25
 Identities = 30/86 (34%), Positives = 43/86 (50%), Gaps = 2/86 (2%)

Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDW-LPEAAKAFDLIDVLPTFVLV 136
           VV+     WCGP K + P  +  A  Y DV F+K+D +      AK    I V+PTF ++
Sbjct: 27  VVLDMFTQWCGPSKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELG-IRVVPTFKIL 85

Query: 137 KRGKEIDRVVGAKKDELQMKTEKRRN 162
           K    +  V GAK D+L    +  R+
Sbjct: 86  KENSVVGEVTGAKYDKLLEAIQAARS 111

>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1 Length = 124

 Score = 92.9 bits (231), Expect = 3e-25
 Identities = 31/86 (36%), Positives = 44/86 (51%), Gaps = 2/86 (2%)

Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDW-LPEAAKAFDLIDVLPTFVLV 136
           VV+     WCGPCK + P  +  A  Y DV F+K+D +      AK    I V+PTF ++
Sbjct: 40  VVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELG-IRVVPTFKIL 98

Query: 137 KRGKEIDRVVGAKKDELQMKTEKRRN 162
           K    +  V GAK D+L    +  R+
Sbjct: 99  KENSVVGEVTGAKYDKLLEAIQAARS 124

>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis} Length = 118

 Score = 92.1 bits (229), Expect = 5e-25
 Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 5/89 (5%)

Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVK 137
           V++ + A WCGPC+ +   +   A    DV FIK+DVD    AA A+  +  +P    VK
Sbjct: 26  VLVDFFATWCGPCQRLGQILPSIAEANKDVTFIKVDVDKNGNAADAYG-VSSIPALFFVK 84

Query: 138 RG----KEIDRVVGAKKDELQMKTEKRRN 162
           +     K +D+ VGA    ++   EK ++
Sbjct: 85  KEGNEIKTLDQFVGADVSRIKADIEKFKH 113

>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum} Length = 133

 Score = 91.0 bits (226), Expect = 2e-24
 Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 6/86 (6%)

Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVK 137
           +VI + A WC PC  I+ Y K+    Y  V  + IDVD  P+     + I  LPTF    
Sbjct: 43  IVIKFGAVWCKPCNKIKEYFKNQLN-YYYVTLVDIDVDIHPKLNDQHN-IKALPTFEFYF 100

Query: 138 RGKE----IDRVVGAKKDELQMKTEK 159
                   +  V GA +++++   +K
Sbjct: 101 NLNNEWVLVHTVEGANQNDIEKAFQK 126

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis} Length = 121

 Score = 85.1 bits (211), Expect = 2e-22
 Identities = 34/84 (40%), Positives = 45/84 (53%), Gaps = 3/84 (3%)

Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYT--DVQFIKIDVDWLPEAAKAFDLIDVLPTFVL 135
           VVI + A WCGPCK I P  +  +       V F K+DVD   + A+    I  +PTFV 
Sbjct: 36  VVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVDEQSQIAQEVG-IRAMPTFVF 94

Query: 136 VKRGKEIDRVVGAKKDELQMKTEK 159
            K G++ID VVGA   +LQ    +
Sbjct: 95  FKNGQKIDTVVGADPSKLQAAITQ 118

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus} Length = 105

 Score = 84.6 bits (210), Expect = 2e-22
 Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 2/83 (2%)

Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVK 137
           V+++     CG C  +   V      Y  V+ I+I +  + E A  +  +   PT +L  
Sbjct: 21  VLLFIKTENCGVCDVMLRKVNYVLENYNYVEKIEILLQDMQEIAGRYA-VFTGPTVLLFY 79

Query: 138 RGKEIDRVVGAK-KDELQMKTEK 159
            GKEI R       + L+   + 
Sbjct: 80  NGKEILRESRFISLENLERTIQL 102

>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A Length = 110

 Score = 75.5 bits (186), Expect = 1e-18
 Identities = 20/83 (24%), Positives = 32/83 (38%), Gaps = 2/83 (2%)

Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVK 137
            ++++    C  CK +E  +  F A    V    +D +  PE  K     + +PT V ++
Sbjct: 22  AIVFFHKNLCPHCKNMEKVLDKFGARAPQVAISSVDSEARPELMKELG-FERVPTLVFIR 80

Query: 138 RGKEIDRVVGAK-KDELQMKTEK 159
            GK      G     ELQ     
Sbjct: 81  DGKVAKVFSGIMNPRELQALYAS 103

>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 137

 Score = 68.7 bits (168), Expect = 1e-15
 Identities = 22/93 (23%), Positives = 35/93 (37%), Gaps = 8/93 (8%)

Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMY--TDVQFIKIDVDWLPEAAKAFDLIDV-----L 130
            ++ + A W   C+   P   D +  Y  T + F K+DV    + +  + +        L
Sbjct: 29  WIVEFFANWSNDCQSFAPIYADLSLKYNCTGLNFGKVDVGRYTDVSTRYKVSTSPLTKQL 88

Query: 131 PTFVLVKRGKEIDRVVGAK-KDELQMKTEKRRN 162
           PT +L + GKE  R      K      T    N
Sbjct: 89  PTLILFQGGKEAMRRPQIDKKGRAVSWTFSEEN 121

>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A Length = 104

 Score = 67.3 bits (165), Expect = 1e-15
 Identities = 24/83 (28%), Positives = 47/83 (56%), Gaps = 2/83 (2%)

Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVK 137
            V+ + A WC PC  + P +++ A  Y  V F K++ D  P+ A  +  +  LPT +  K
Sbjct: 19  AVVDFWAEWCAPCLILAPIIEELAEDYPQVGFGKLNSDENPDIAARYG-VMSLPTVIFFK 77

Query: 138 RGKEIDRVVGAK-KDELQMKTEK 159
            G+ +D ++GA  ++E++++ + 
Sbjct: 78  DGEPVDEIIGAVPREEIEIRIKN 100

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens} Length = 126

 Score = 67.5 bits (165), Expect = 2e-15
 Identities = 12/87 (13%), Positives = 35/87 (40%), Gaps = 6/87 (6%)

Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTD---VQFIKIDVDWLPEAAKAFDLIDVLPTFV 134
            +I +    C  C  ++  +   +        + + +++ +   + A  +D  +++PT V
Sbjct: 29  TIIMFKTDTCPYCVEMQKELSYVSKEREGKFNIYYARLEEEKNIDLAYKYD-ANIVPTTV 87

Query: 135 LV-KRGKEIDRVVGA-KKDELQMKTEK 159
            + K G +     G  +K+ ++     
Sbjct: 88  FLDKEGNKFYVHQGLMRKNNIETILNS 114

>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A Length = 142

 Score = 67.9 bits (166), Expect = 2e-15
 Identities = 8/85 (9%), Positives = 22/85 (25%), Gaps = 4/85 (4%)

Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFI--KIDVDWLPEAAKAFDLIDVLPTFVL 135
           +++                + +    +    +     D++        F+ +   P  ++
Sbjct: 39  ILLSSDPRRTPEVSDNPVMIAELLREFPQFDWQVAVADLEQSEAIGDRFN-VRRFPATLV 97

Query: 136 VKRGKEIDRVVGAK-KDELQMKTEK 159
              GK    + G     EL      
Sbjct: 98  FTDGKLRGALSGIHPWAELLTLMRS 122

>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum} Length = 128

 Score = 66.6 bits (163), Expect = 4e-15
 Identities = 24/105 (22%), Positives = 42/105 (40%), Gaps = 8/105 (7%)

Query: 61  MVLNINDGGNVVFWVLK----VVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVD 115
             L  N   N++  V      +V+Y+ A WC  C      +      Y   +  +K+D+D
Sbjct: 25  PRLQQNGS-NIINGVNMKNTVIVLYFFAKWCQACTMQSTEMDKLQKYYGKRIYLLKVDLD 83

Query: 116 WLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAK-KDELQMKTEK 159
                A+ F  +  LPT +L+K    + R       ++L    +K
Sbjct: 84  KNESLARKFS-VKSLPTIILLKNKTMLARKDHFVSSNDLIALIKK 127

>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens} Length = 118

 Score = 66.3 bits (162), Expect = 4e-15
 Identities = 13/70 (18%), Positives = 31/70 (44%), Gaps = 4/70 (5%)

Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVK 137
           V+I+   +    C  +  ++   A  + + +F+K  V+      + +   + LPT  + K
Sbjct: 26  VIIHLYRSSIPMCLLVNQHLSLLARKFPETKFVKAIVN---SCIQHYH-DNCLPTIFVYK 81

Query: 138 RGKEIDRVVG 147
            G+   + +G
Sbjct: 82  NGQIEAKFIG 91

>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} PDB: 1xbs_A Length = 149

 Score = 66.5 bits (162), Expect = 8e-15
 Identities = 12/76 (15%), Positives = 28/76 (36%), Gaps = 2/76 (2%)

Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLV 136
           +V+ +       C  ++  +   ++  +       +DVD      + FD I  +P+ V  
Sbjct: 26  LVLRFGRDEDPVCLQLDDILSKTSSDLSKMAAIYLVDVDQTAVYTQYFD-ISYIPSTVFF 84

Query: 137 KRGKEIDRVVGAKKDE 152
             G+ +    G+    
Sbjct: 85  FNGQHMKVDYGSPDHT 100

>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus} Length = 136

 Score = 66.3 bits (162), Expect = 9e-15
 Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 7/101 (6%)

Query: 65  INDGGNVVFWVLK----VVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPE 119
            N   N   W  +     ++ + A WCGPCK + P + + A  Y   +   K+D +   E
Sbjct: 24  YNFEKNPEEWKYEGDKPAIVDFYADWCGPCKMVAPILDELAKEYDGQIVIYKVDTEKEQE 83

Query: 120 AAKAFDLIDVLPTFVLVKRGKEIDRVVGAK-KDELQMKTEK 159
            A AF  I  +P+ + +    + +   GA  K   +   ++
Sbjct: 84  LAGAFG-IRSIPSILFIPMEGKPEMAQGAMPKASFKKAIDE 123

>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus} Length = 155

 Score = 66.3 bits (162), Expect = 1e-14
 Identities = 29/91 (31%), Positives = 39/91 (42%), Gaps = 12/91 (13%)

Query: 71  VVFWVLKVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDV 129
           V FW         A WCGPC+ + P  +  AA     V+  KID    P  A     I  
Sbjct: 69  VDFW---------APWCGPCRQMAPQFQAAAATLAGQVRLAKIDTQAHPAVAGRHR-IQG 118

Query: 130 LPTFVLVKRGKEIDRVVGAK-KDELQMKTEK 159
           +P F+L  +G+E+ R  GA+   EL      
Sbjct: 119 IPAFILFHKGRELARAAGARPASELVGFVRG 149

>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix} Length = 135

 Score = 65.6 bits (160), Expect = 1e-14
 Identities = 13/91 (14%), Positives = 28/91 (30%), Gaps = 10/91 (10%)

Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMY--------TDVQFIKIDVDWLPEAAKAFDLIDV 129
            ++   +  C  C    P +   +                 + ++            ++ 
Sbjct: 34  AILAVYSKTCPHCHRDWPQLIQASKEVDVPIVMFIWGSLIGERELSAARLEMNKAG-VEG 92

Query: 130 LPTFVLVKRGKEIDRVVGAK-KDELQMKTEK 159
            PT V  K G+ +D++VGA        K  +
Sbjct: 93  TPTLVFYKEGRIVDKLVGATPWSLKVEKARE 123

>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis} Length = 148

 Score = 65.5 bits (160), Expect = 2e-14
 Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 12/91 (13%)

Query: 71  VVFWVLKVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDV 129
           + FW         A WCGPC+   P   + AA     V+F+K++ +  P  +  F  I  
Sbjct: 60  IDFW---------APWCGPCRSFAPIFAETAAERAGKVRFVKVNTEAEPALSTRFR-IRS 109

Query: 130 LPTFVLVKRGKEIDRVVGAK-KDELQMKTEK 159
           +PT +L + GK ID + GA  K       ++
Sbjct: 110 IPTIMLYRNGKMIDMLNGAVPKAPFDNWLDE 140

>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus} Length = 140

 Score = 65.5 bits (160), Expect = 2e-14
 Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 12/91 (13%)

Query: 71  VVFWVLKVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDV 129
           V F+         A WCGPC+ + P +++ A  +   ++ +K++VD  P  A  +  +  
Sbjct: 55  VDFF---------APWCGPCRLVSPILEELARDHAGRLKVVKVNVDEHPGLAARYG-VRS 104

Query: 130 LPTFVLVKRGKEIDRVVGAK-KDELQMKTEK 159
           +PT VL +RG  +   VGA  +  L+ +   
Sbjct: 105 VPTLVLFRRGAPVATWVGASPRRVLEERLRP 135

>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus} Length = 135

 Score = 65.3 bits (159), Expect = 2e-14
 Identities = 14/70 (20%), Positives = 31/70 (44%), Gaps = 4/70 (5%)

Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVK 137
           VVI+   +    C  +  ++   A  + + +F+K  V+      + +   + LPT  + K
Sbjct: 33  VVIHLYRSSVPMCLVVNQHLSVLARKFPETKFVKAIVN---SCIEHYH-DNCLPTIFVYK 88

Query: 138 RGKEIDRVVG 147
            G+   + +G
Sbjct: 89  NGQIEGKFIG 98

>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei} Length = 140

 Score = 65.1 bits (159), Expect = 3e-14
 Identities = 22/91 (24%), Positives = 38/91 (41%), Gaps = 7/91 (7%)

Query: 75  VLK----VVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDV 129
           V      VV+ + +  C  CK +EPY +++A  Y     F +I++   P  A+ +  +  
Sbjct: 20  VEDSKKPVVVMFYSPACPYCKAMEPYFEEYAKEYGSSAVFGRINIATNPWTAEKYG-VQG 78

Query: 130 LPTFVLVKRGKEIDRVVGAK-KDELQMKTEK 159
            PTF     G+ +   VG      L+     
Sbjct: 79  TPTFKFFCHGRPVWEQVGQIYPSILKNAVRD 109

>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A Length = 141

 Score = 64.9 bits (158), Expect = 3e-14
 Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 7/101 (6%)

Query: 65  INDGGNVVFWVLK----VVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPE 119
            +   +   W        ++ + A WCGPCK + P +++ +  Y   +   K++VD  PE
Sbjct: 37  ADYENHSKEWKYLGDKPAIVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDKEPE 96

Query: 120 AAKAFDLIDVLPTFVLVKRGKEIDRVVGAK-KDELQMKTEK 159
            A+ F  I  +PT   V    E    +GA  K++L+   +K
Sbjct: 97  LARDFG-IQSIPTIWFVPMKGEPQVNMGALSKEQLKGYIDK 136

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} Length = 109

 Score = 63.5 bits (155), Expect = 4e-14
 Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 5/105 (4%)

Query: 59  NEMVLNINDGG--NVVFWVLKVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVD 115
            ++ L + +     V+     V++   A WC PC   EP  K  A  Y     F +++VD
Sbjct: 3   EDVTLVLTEENFDEVIRNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGKAVFGRLNVD 62

Query: 116 WLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAK-KDELQMKTEK 159
              + A  +  +  +PT ++   G+ +D +VGA  +D L+    K
Sbjct: 63  ENQKIADKYS-VLNIPTTLIFVNGQLVDSLVGAVDEDTLESTVNK 106

>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A Length = 119

 Score = 63.5 bits (155), Expect = 7e-14
 Identities = 32/105 (30%), Positives = 54/105 (51%), Gaps = 7/105 (6%)

Query: 61  MVLNINDGGNVVFWVLK----VVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVD 115
              NI DG +    V+     VV+ + A WCGPCK + P ++   A     V   K+D+D
Sbjct: 13  TTFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDID 72

Query: 116 WLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAK-KDELQMKTEK 159
              + A  ++ +  +PT + +K G  +D+ VG K +D+L+   +K
Sbjct: 73  DHTDLAIEYE-VSAVPTVLAMKNGDVVDKFVGIKDEDQLEAFLKK 116

>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C Length = 245

 Score = 65.5 bits (159), Expect = 9e-14
 Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 2/74 (2%)

Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVK 137
           +V++        C  +   +   AA Y  V+F KI         + F   DVLPT ++ K
Sbjct: 136 IVVHIYEDGIKGCDALNSSLICLAAEYPMVKFCKIKASNTGAGDR-FS-SDVLPTLLVYK 193

Query: 138 RGKEIDRVVGAKKD 151
            G+ +   +   + 
Sbjct: 194 GGELLSNFISVTEQ 207

>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A Length = 109

 Score = 62.3 bits (152), Expect = 1e-13
 Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 3/84 (3%)

Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLV 136
           V++ + A WC PC+ I P +++ A  Y   +   K+DVD  P+ A  +  +  +PT +L 
Sbjct: 21  VLVDFWAEWCAPCRMIAPILEEIAKEYEGKLLVAKLDVDENPKTAMRYR-VMSIPTVILF 79

Query: 137 KRGKEIDRVVGAK-KDELQMKTEK 159
           K G+ ++ +VGA+ K   Q K EK
Sbjct: 80  KDGQPVEVLVGAQPKRNYQAKIEK 103

>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} PDB: 2o7k_A 2o85_A 2o89_A 2o87_A Length = 106

 Score = 62.0 bits (151), Expect = 2e-13
 Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 12/91 (13%)

Query: 71  VVFWVLKVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDV 129
           V FW         A  CGPCK I P +++ AA Y      +K+DVD  P  A  ++ +  
Sbjct: 24  VDFW---------ATACGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYE-VMS 73

Query: 130 LPTFVLVKRGKEIDRVVGAK-KDELQMKTEK 159
           +PT ++ K G+ +D+VVG + K+ L    +K
Sbjct: 74  IPTLIVFKDGQPVDKVVGFQPKENLAEVLDK 104

>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1 Length = 115

 Score = 61.6 bits (150), Expect = 3e-13
 Identities = 28/91 (30%), Positives = 50/91 (54%), Gaps = 7/91 (7%)

Query: 75  VLK----VVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDV 129
           VLK    V++Y+ A+WCGPC+ + P +   A  Y+D ++ +K+++D  P   K +  ++ 
Sbjct: 21  VLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPTTVKKYK-VEG 79

Query: 130 LPTFVLVKRGKEIDRVVGAK-KDELQMKTEK 159
           +P   LVK  + +D   G   KD+L    + 
Sbjct: 80  VPALRLVKGEQILDSTEGVISKDKLLSFLDT 110

>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A Length = 105

 Score = 61.1 bits (149), Expect = 3e-13
 Identities = 30/91 (32%), Positives = 50/91 (54%), Gaps = 12/91 (13%)

Query: 71  VVFWVLKVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDV 129
           V FW         AAWCGPC+ + P +++FA  + D V   K++VD  PE    F  I  
Sbjct: 22  VDFW---------AAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFG-IMS 71

Query: 130 LPTFVLVKRGKEIDRVVGAK-KDELQMKTEK 159
           +PT +L K G+ + +++G + K++L+ +   
Sbjct: 72  IPTLILFKGGRPVKQLIGYQPKEQLEAQLAD 102

>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A Length = 121

 Score = 61.6 bits (150), Expect = 3e-13
 Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 7/91 (7%)

Query: 75  VLK----VVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDV 129
           VL     V++ + A WCGPCK + P +++ A      +   K+DVD  PE A+ F  +  
Sbjct: 26  VLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPETARNFQ-VVS 84

Query: 130 LPTFVLVKRGKEIDRVVGAK-KDELQMKTEK 159
           +PT +L K G+ + R+VGAK K  L  +   
Sbjct: 85  IPTLILFKDGQPVKRIVGAKGKAALLRELSD 115

>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A Length = 112

 Score = 61.1 bits (149), Expect = 4e-13
 Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 12/91 (13%)

Query: 71  VVFWVLKVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDV 129
             FW         A WCGP K I P +++      D ++ +KIDVD   E A  +  +  
Sbjct: 22  ADFW---------APWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDENQETAGKYG-VMS 71

Query: 130 LPTFVLVKRGKEIDRVVGAK-KDELQMKTEK 159
           +PT +++K G+ ++  VG K K+ LQ    K
Sbjct: 72  IPTLLVLKDGEVVETSVGFKPKEALQELVNK 102

>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti} Length = 107

 Score = 61.1 bits (149), Expect = 4e-13
 Identities = 32/91 (35%), Positives = 46/91 (50%), Gaps = 12/91 (13%)

Query: 71  VVFWVLKVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDV 129
           V FW         A WCGPCK I P + +    +   V   K+++D  PE   A+  +  
Sbjct: 25  VDFW---------AEWCGPCKMIGPALGEIGKEFAGKVTVAKVNIDDNPETPNAYQ-VRS 74

Query: 130 LPTFVLVKRGKEIDRVVGAK-KDELQMKTEK 159
           +PT +LV+ GK ID+ VGA  K +L+   E 
Sbjct: 75  IPTLMLVRDGKVIDKKVGALPKSQLKAWVES 105

>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} Length = 111

 Score = 60.8 bits (148), Expect = 6e-13
 Identities = 16/91 (17%), Positives = 34/91 (37%), Gaps = 12/91 (13%)

Query: 71  VVFWVLKVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDV 129
           V+F             C  C+ + P +++    Y +   F  +DV+      + F  +  
Sbjct: 27  VMFS---------RKNCHVCQKVTPVLEELRLNYEESFGFYYVDVEEEKTLFQRFS-LKG 76

Query: 130 LPTFVLVKRGKEIDRVVGAK-KDELQMKTEK 159
           +P  +  K G+   ++ G    DE++     
Sbjct: 77  VPQILYFKDGEYKGKMAGDVEDDEVEQMIAD 107

>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor} Length = 112

 Score = 60.4 bits (147), Expect = 8e-13
 Identities = 30/91 (32%), Positives = 50/91 (54%), Gaps = 7/91 (7%)

Query: 75  VLK----VVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDV 129
           VLK    V++ + AAWCGPC+ I P ++  AA Y D ++ +K+++D  P  A  +  +  
Sbjct: 19  VLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDKIEIVKLNIDENPGTAAKYG-VMS 77

Query: 130 LPTFVLVKRGKEIDRVVGAK-KDELQMKTEK 159
           +PT  + + G+    +VGAK K  +    E 
Sbjct: 78  IPTLNVYQGGEVAKTIVGAKPKAAIVRDLED 108

>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C Length = 105

 Score = 60.0 bits (146), Expect = 1e-12
 Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 12/91 (13%)

Query: 71  VVFWVLKVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDV 129
           V FW         A WCGPCK I P + + A  Y+  +   K++ D  P  A  ++ I  
Sbjct: 23  VDFW---------APWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYN-IRS 72

Query: 130 LPTFVLVKRGKEIDRVVGAK-KDELQMKTEK 159
           +PT +  K G+  + ++GA  K  L    EK
Sbjct: 73  IPTVLFFKNGERKESIIGAVPKSTLTDSIEK 103

>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli} Length = 128

 Score = 60.5 bits (147), Expect = 1e-12
 Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 7/91 (7%)

Query: 75  VLK----VVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDV 129
           VLK    +++ + A WCGP K I P + + A  Y   +   K+++D  P  A  +  I  
Sbjct: 36  VLKADGAILVDFWAEWCGPAKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYG-IRG 94

Query: 130 LPTFVLVKRGKEIDRVVGAK-KDELQMKTEK 159
           +PT +L K G+     VGA  K +L+   + 
Sbjct: 95  IPTLLLFKNGEVAATKVGALSKGQLKEFLDA 125

>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct} Length = 106

 Score = 59.6 bits (145), Expect = 1e-12
 Identities = 33/91 (36%), Positives = 52/91 (57%), Gaps = 12/91 (13%)

Query: 71  VVFWVLKVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDV 129
           V FW         A WCGPC+ I P +++ A  Y   V+ +K++VD  P  A  +  I  
Sbjct: 24  VDFW---------APWCGPCRMIAPIIEELAKEYEGKVKVVKVNVDENPNTAAQYG-IRS 73

Query: 130 LPTFVLVKRGKEIDRVVGAK-KDELQMKTEK 159
           +PT +L K G+ +DR+VGA+ K+ L+ + +K
Sbjct: 74  IPTLLLFKNGQVVDRLVGAQPKEALKERIDK 104

>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1 Length = 107

 Score = 59.6 bits (145), Expect = 1e-12
 Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 12/91 (13%)

Query: 71  VVFWVLKVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDV 129
           V FW         A WCGPC+ I P V + A  Y D ++ +K++ D  P  A  +  I  
Sbjct: 24  VDFW---------APWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVASEYG-IRS 73

Query: 130 LPTFVLVKRGKEIDRVVGAK-KDELQMKTEK 159
           +PT ++ K GK+ + ++GA  K  +    EK
Sbjct: 74  IPTIMVFKGGKKCETIIGAVPKATIVQTVEK 104

>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron} Length = 130

 Score = 59.8 bits (145), Expect = 2e-12
 Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 9/91 (9%)

Query: 77  KVVIYYTAAWCGPCKFIEPYV--KDFAAMYTDVQFI--KIDVDW--LPEAAKAFDLIDVL 130
            + +     WCGPCK +   V      A Y +  F+  K+D++     E  K +  +   
Sbjct: 29  LLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRHFVNLKMDMEKGEGVELRKKYG-VHAY 87

Query: 131 PTFVLVKR-GKEIDRVVGAK-KDELQMKTEK 159
           PT + +   G+ + R+VGA+   EL  K + 
Sbjct: 88  PTLLFINSSGEVVYRLVGAEDAPELLKKVKL 118

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* Length = 287

 Score = 61.7 bits (150), Expect = 3e-12
 Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 2/72 (2%)

Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLV 136
           V+ Y+ +     C  + P ++  AA Y       K+D D     A  F  +  +PT  L 
Sbjct: 29  VLFYFWSERSQHCLQLTPILESLAAQYNGQFILAKLDCDAEQMIAAQFG-LRAIPTVYLF 87

Query: 137 KRGKEIDRVVGA 148
           + G+ +D   G 
Sbjct: 88  QNGQPVDGFQGP 99

>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ... Length = 108

 Score = 58.8 bits (143), Expect = 3e-12
 Identities = 36/122 (29%), Positives = 55/122 (45%), Gaps = 20/122 (16%)

Query: 41  SDRLVMTNETGFCLIYCINEMVLNINDGGNVV-FWVLKVVIYYTAAWCGPCKFIEPYVKD 99
           SD+++   +  F      +  VL   DG  +V FW         A WCGPCK I P + +
Sbjct: 1   SDKIIHLTDDSF------DTDVLK-ADGAILVDFW---------AEWCGPCKMIAPILDE 44

Query: 100 FAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAK-KDELQMKT 157
            A  Y   +   K+++D  P  A  +  I  +PT +L K G+     VGA  K +L+   
Sbjct: 45  IADEYQGKLTVAKLNIDQNPGTAPKYG-IRGIPTLLLFKNGEVAATKVGALSKGQLKEFL 103

Query: 158 EK 159
           + 
Sbjct: 104 DA 105

>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6 Length = 217

 Score = 59.6 bits (144), Expect = 1e-11
 Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 2/74 (2%)

Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVK 137
           +V+         C  +   ++  AA Y  V+F KI         + F   DVLPT ++ K
Sbjct: 123 IVVNIYEDGVRGCDALNSSLECLAAEYPMVKFCKIRASNTGAGDR-FS-SDVLPTLLVYK 180

Query: 138 RGKEIDRVVGAKKD 151
            G+ I   +   + 
Sbjct: 181 GGELISNFISVAEQ 194

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1 Length = 85

 Score = 55.0 bits (133), Expect = 5e-11
 Identities = 20/91 (21%), Positives = 36/91 (39%), Gaps = 16/91 (17%)

Query: 71  VVFWVLKVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDV 129
            +F          +  C  C   +  V++ A    D V+   I+V   P+ A  + ++ V
Sbjct: 7   ELFT---------SPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQKAMEYGIMAV 57

Query: 130 LPTFVLVKRGKEIDRVVGAK-KDELQMKTEK 159
            PT V+    +     +GA  K+ L    +K
Sbjct: 58  -PTIVINGDVE----FIGAPTKEALVEAIKK 83

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A Length = 134

 Score = 55.6 bits (134), Expect = 9e-11
 Identities = 19/87 (21%), Positives = 30/87 (34%), Gaps = 12/87 (13%)

Query: 78  VVIYYTAAWCGPCKFIEPYV---KDFAAMYTDVQFIKIDV----DWLPEAAKAFDLIDVL 130
           V++   A WC  CK  E Y            D   ++ +V           K  + +  L
Sbjct: 34  VMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTANDAQDVALLKHLN-VLGL 92

Query: 131 PTFVLV-KRGKEID--RVVGA-KKDEL 153
           PT +    +G+E    RV G    +  
Sbjct: 93  PTILFFDGQGQEHPQARVTGFMDAETF 119

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, alternative splicing, FBP interacting repressor, RRM, electron transport; 2.20A {Escherichia coli O157} Length = 222

 Score = 56.4 bits (136), Expect = 1e-10
 Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 11/79 (13%)

Query: 71  VVFWVLKVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDV 129
           V FW         A WCGPCK I P + + A  Y   +   K+++D  P  A  +  I  
Sbjct: 35  VDFW---------AEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYG-IRG 84

Query: 130 LPTFVLVKRGKEIDRVVGA 148
           +PT +L K G+     VGA
Sbjct: 85  IPTLLLFKNGEVAATKVGA 103

>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A* Length = 116

 Score = 53.1 bits (127), Expect = 5e-10
 Identities = 15/82 (18%), Positives = 27/82 (32%), Gaps = 6/82 (7%)

Query: 77  KVVIYYTAAWCGPCKFIEP-----YVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLP 131
             ++ +    C  C   +      Y          VQ +++     P    A   +   P
Sbjct: 20  LRLLMFEQPGCLYCARWDAEIAPQYPLTDEGRAAPVQRLQMRDPLPPGLELARP-VTFTP 78

Query: 132 TFVLVKRGKEIDRVVGAKKDEL 153
           TFVL+    E  R+ G   ++ 
Sbjct: 79  TFVLMAGDVESGRLEGYPGEDF 100

>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus} Length = 122

 Score = 50.8 bits (122), Expect = 4e-09
 Identities = 22/92 (23%), Positives = 34/92 (36%), Gaps = 11/92 (11%)

Query: 59  NEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWL 117
           NE VL       V F+         A WCGPC+   P  +  A M    V+  K+D    
Sbjct: 14  NEKVLQGKTHWVVDFY---------APWCGPCQNFAPEFELLARMIKGKVRAGKVDCQAY 64

Query: 118 PEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAK 149
           P+  +    I   P+  L +  +    +   +
Sbjct: 65  PQTCQKAG-IKAYPSVKLYQYERAKKSIWEEQ 95

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A Length = 226

 Score = 50.5 bits (120), Expect = 2e-08
 Identities = 14/76 (18%), Positives = 27/76 (35%), Gaps = 6/76 (7%)

Query: 79  VIYYTAAWCGPCKFIEPYVKDFAAMYTD-----VQFIKIDVDWLPEAAKAFDLIDVLPTF 133
           ++ +    C  C         FA   T      +    ++    PE A  ++++ V P  
Sbjct: 138 ILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPEWADQYNVMAV-PKI 196

Query: 134 VLVKRGKEIDRVVGAK 149
           V+   G++     GA 
Sbjct: 197 VIQVNGEDRVEFEGAY 212

>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A Length = 164

 Score = 49.3 bits (117), Expect = 3e-08
 Identities = 10/79 (12%), Positives = 31/79 (39%), Gaps = 4/79 (5%)

Query: 78  VVIYYTAAWCGPCKFIEPYV---KDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFV 134
           +++    +WCG CK ++P      + + +  +   + ++ +  P+          +P  +
Sbjct: 49  LMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPKDEDFSPDGGYIPRIL 108

Query: 135 LV-KRGKEIDRVVGAKKDE 152
            +   GK    ++    + 
Sbjct: 109 FLDPSGKVHPEIINENGNP 127

>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1 Length = 123

 Score = 48.6 bits (116), Expect = 3e-08
 Identities = 29/100 (29%), Positives = 41/100 (41%), Gaps = 26/100 (26%)

Query: 71  VVFWVLKVVIYYTAAWCGP--------------CKFIEPYVKDFAAMYTD-VQFIKIDVD 115
           V FW         A WCGP              CK I P + + A  Y   +   K+++D
Sbjct: 26  VDFW---------AEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQGKLTVAKLNID 76

Query: 116 WLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAK-KDELQ 154
             P  A  +  I  +PT +L K G+     VGA  K +L+
Sbjct: 77  QNPGTAPKYG-IRGIPTLLLFKNGEVAATKVGALSKGQLK 115

>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1 Length = 85

 Score = 46.5 bits (111), Expect = 8e-08
 Identities = 17/85 (20%), Positives = 31/85 (36%), Gaps = 7/85 (8%)

Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLV 136
            +  +T+  C  C      V +    + D +   KID+    E A  +  +  +P   + 
Sbjct: 4   NIEVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDREKAIEYG-LMAVPAIAI- 61

Query: 137 KRGKEIDRVVGAK-KDELQMKTEKR 160
                + R VGA  ++EL       
Sbjct: 62  ---NGVVRFVGAPSREELFEAINDE 83

>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1 Length = 118

 Score = 45.3 bits (107), Expect = 4e-07
 Identities = 11/81 (13%), Positives = 22/81 (27%), Gaps = 6/81 (7%)

Query: 77  KVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDL-----IDVLP 131
               +     C  C+     +    A  T      I+ +   +            I  +P
Sbjct: 31  TATFFIGRKTCPYCRKFAGTLSGVVAE-TKAHIYFINSEEPSQLNDLQAFRSRYGIPTVP 89

Query: 132 TFVLVKRGKEIDRVVGAKKDE 152
            FV +  G+   R   +   +
Sbjct: 90  GFVHITDGQINVRCDSSMSAQ 110

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A Length = 241

 Score = 47.1 bits (112), Expect = 4e-07
 Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 5/70 (7%)

Query: 78  VVIYYTAAWCGPCKFIEP-YVK---DFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTF 133
           +++ + A WCG CK + P Y K   + +     +   K+D     + AK FD +   PT 
Sbjct: 150 ILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATAETDLAKRFD-VSGYPTL 208

Query: 134 VLVKRGKEID 143
            + ++G+  D
Sbjct: 209 KIFRKGRPYD 218

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A Length = 241

 Score = 38.7 bits (90), Expect = 3e-04
 Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 5/70 (7%)

Query: 78  VVIYYTAAWCGPCKFIEP-YVK---DFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTF 133
           V++ + A WCG CK   P Y K           +   KID       A  FD +   PT 
Sbjct: 35  VLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATSASVLASRFD-VSGYPTI 93

Query: 134 VLVKRGKEID 143
            ++K+G+ +D
Sbjct: 94  KILKKGQAVD 103

>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus} Length = 152

 Score = 44.2 bits (105), Expect = 2e-06
 Identities = 22/113 (19%), Positives = 37/113 (32%), Gaps = 39/113 (34%)

Query: 69  GNVV---FWVLKVVIYYTAAWCGPCKFIEPYVKDFAAMYTD--VQFIKIDVD-------- 115
           G  +    W         A WCGPC+   P +K+    Y    + F+ +  D        
Sbjct: 30  GKYIYIDVW---------ATWCGPCRGELPALKELEEKYAGKDIHFVSLSCDKNKKAWEN 80

Query: 116 --------WLP-------EAAKAFDLIDVLPTFVLV-KRGKEIDRVVGAKKDE 152
                    +            A+  I+ +P F+L+ + GK I   +    D 
Sbjct: 81  MVTKDQLKGIQLHMGTDRTFMDAYL-INGIPRFILLDRDGKIISANMTRPSDP 132

>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10 Length = 136

 Score = 42.7 bits (101), Expect = 5e-06
 Identities = 14/59 (23%), Positives = 18/59 (30%), Gaps = 12/59 (20%)

Query: 69  GNVV---FWVLKVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAF 124
           G      FW           WC  C    P +   AA    V F+ I       A ++F
Sbjct: 24  GKPAVLWFW---------TPWCPFCNAEAPSLSQVAAANPAVTFVGIATRADVGAMQSF 73

>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A Length = 167

 Score = 43.1 bits (101), Expect = 5e-06
 Identities = 8/87 (9%), Positives = 28/87 (32%), Gaps = 3/87 (3%)

Query: 79  VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLID--VLPTFVLV 136
           ++     WC  C+     +     +  +++   I      +  +    ++   +P  +++
Sbjct: 58  LLVAGEMWCPDCQINLAALDFAQRLQPNIELAIISKGRAEDDLRQRLALERIAIPLVLVL 117

Query: 137 -KRGKEIDRVVGAKKDELQMKTEKRRN 162
            +    + R V   +  L    +    
Sbjct: 118 DEEFNLLGRFVERPQAVLDGGPQALAA 144

>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus} Length = 130

 Score = 42.0 bits (99), Expect = 1e-05
 Identities = 16/85 (18%), Positives = 36/85 (42%), Gaps = 13/85 (15%)

Query: 77  KVVIYYTAAWCGPCKFIEPYV---KDFAAMYTDVQFIKIDVDW----LPEAAKAFDLIDV 129
            V++Y+ +  C  C+ +  +V      +    + +F+   V        E A+ +  +  
Sbjct: 21  MVMVYFHSEHCPYCQQMNTFVLSDPGVSR-LLEARFVVASVSVDTPEGQELARRYR-VPG 78

Query: 130 LPTFVLV----KRGKEIDRVVGAKK 150
            PTFV +       +E+ R+ G++ 
Sbjct: 79  TPTFVFLVPKAGAWEEVGRLFGSRP 103

>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls} Length = 152

 Score = 42.3 bits (100), Expect = 1e-05
 Identities = 26/118 (22%), Positives = 46/118 (38%), Gaps = 36/118 (30%)

Query: 69  GNVV---FWVLKVVIYYTAAWCGPCKFIEPYVKDFAAMYTD--VQFIKIDVDWLPEAAKA 123
           G+VV   FW         A+WCGPC+   P++    A Y     Q + +++D     A  
Sbjct: 28  GSVVYLDFW---------ASWCGPCRQSFPWMNQMQAKYKAKGFQVVAVNLDAKTGDAMK 78

Query: 124 F------------DL---------IDVLPTFVLV-KRGKEIDRVVGAKKDELQMKTEK 159
           F            D          +  +PT  L+ + GK + + VG +  + +   ++
Sbjct: 79  FLAQVPAEFTVAFDPKGQTPRLYGVKGMPTSFLIDRNGKVLLQHVGFRPADKEALEQQ 136

>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} Length = 165

 Score = 42.0 bits (99), Expect = 2e-05
 Identities = 20/120 (16%), Positives = 32/120 (26%), Gaps = 44/120 (36%)

Query: 69  GNVV---FWVLKVVIYYTAAWCGPCKFIE-PYVKDFAAMYTD--VQFIKIDVDWLPEAAK 122
           G      F+         A WC PC+  E P +      +      F+ I V+      K
Sbjct: 34  GKAYIVNFF---------ATWCPPCR-SEIPDMVQVQKTWASRGFTFVGIAVNEQLPNVK 83

Query: 123 AF------------DL--------------IDVLPTFVLV-KRGKEIDRVVGA-KKDELQ 154
            +                            I  +PT  ++   G     +VG   K +  
Sbjct: 84  NYMKTQGIIYPVMMATPELIRAFNGYIDGGITGIPTSFVIDASGNVSGVIVGPRSKADFD 143

>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa} Length = 133

 Score = 41.4 bits (97), Expect = 2e-05
 Identities = 17/80 (21%), Positives = 34/80 (42%), Gaps = 9/80 (11%)

Query: 78  VVIYYTAAWCGPCKFIEPYVKD---FAAMYTDVQFIKIDVDWL---PEAAKAFDLIDV-- 129
            ++ + A WC  C+ ++  +++    A +    + +KIDV       E ++A+       
Sbjct: 32  TLLVFGANWCTDCRALDKSLRNQKNTALIAKHFEVVKIDVGNFDRNLELSQAYGDPIQDG 91

Query: 130 LPTFVLV-KRGKEIDRVVGA 148
           +P  V+V   GK      G 
Sbjct: 92  IPAVVVVNSDGKVRYTTKGG 111

>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major} Length = 165

 Score = 41.7 bits (98), Expect = 2e-05
 Identities = 19/98 (19%), Positives = 33/98 (33%), Gaps = 6/98 (6%)

Query: 33  SQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLK---VVIYYTAAWCGP 89
           S +     S  LV        +   + E +             L    V  Y++A+WC P
Sbjct: 3   SSHHHHHHSSGLVPRGSHMSGVAKHLGEALKLRKQADTADMDSLSGKTVFFYFSASWCPP 62

Query: 90  CKFIEPYVKDFAAMYTD---VQFIKIDVDWLPEAAKAF 124
           C+   P + +F   + D    + I    D   +   A+
Sbjct: 63  CRGFTPQLVEFYEKHHDSKNFEIILASWDEEEDDFNAY 100

>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP} Length = 152

 Score = 41.1 bits (97), Expect = 2e-05
 Identities = 17/119 (14%), Positives = 32/119 (26%), Gaps = 41/119 (34%)

Query: 69  GNVV---FWVLKVVIYYTAAWCGPCKFIEPYVKDFAAMYTD--VQFIKIDVD-------- 115
           G  V   FW          A C  C+   PY+      + D       +  D        
Sbjct: 29  GKYVLVDFW---------FAGCSWCRKETPYLLKTYNAFKDKGFTIYGVSTDRREEDWKK 79

Query: 116 -----------------WLPEAAKAFDLIDVLPTFVLV-KRGKEIDRVVGAKKDELQMK 156
                             + +  +++  I   P  +LV   GK + + +        ++
Sbjct: 80  AIEEDKSYWNQVLLQKDDVKDVLESYC-IVGFPHIILVDPEGKIVAKELRGDDLYNTVE 137

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score = 42.4 bits (99), Expect = 3e-05
 Identities = 10/67 (14%), Positives = 27/67 (40%), Gaps = 2/67 (2%)

Query: 78  VVIYYTAAWCGPCKFIEPYVKDFA-AMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLV 136
            ++ + A W  P + + P ++  +  +Y  ++   +D          ++ I   PT V+ 
Sbjct: 458 WLVDFFAPWSPPSRALLPELRKASTLLYGQLKVGTLDCTIHEGLCNMYN-IQAYPTTVVF 516

Query: 137 KRGKEID 143
            +    +
Sbjct: 517 NQSSIHE 523

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score = 41.7 bits (97), Expect = 4e-05
 Identities = 8/65 (12%), Positives = 19/65 (29%), Gaps = 2/65 (3%)

Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLV 136
            ++ + + W  P + + P  K  A   T  +    +D           + +   P     
Sbjct: 566 WMVDFYSPWSHPSQVLMPEWKRMARTLTGLINVGSVDCGQYHSFCTQEN-VQRYPEIRFY 624

Query: 137 KRGKE 141
            +   
Sbjct: 625 PQKSS 629

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score = 40.1 bits (93), Expect = 1e-04
 Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 2/64 (3%)

Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLV 136
            V+ + A W GP +   P  +  A M    V+  K+D    P+  +    I   P+  L 
Sbjct: 678 WVVDFYAPWSGPSQNFAPEFELLARMIKGKVRAGKVDCQAYPQTCQKAG-IKAYPSVKLY 736

Query: 137 KRGK 140
           +  +
Sbjct: 737 QYER 740

>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 126

 Score = 40.0 bits (94), Expect = 4e-05
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 3/62 (4%)

Query: 84  AAWCGPCKFIEPYVKDFAAMY--TDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKE 141
           A WC  C+ ++P  + FA      +V   K+DV   P  +  F  I+ LPT    K G+ 
Sbjct: 31  APWCPACQNLQPEWESFAEWGEDLEVNIAKVDVTEQPGLSGRFI-INALPTIYHCKDGEF 89

Query: 142 ID 143
             
Sbjct: 90  RR 91

>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum} Length = 183

 Score = 40.9 bits (96), Expect = 5e-05
 Identities = 20/117 (17%), Positives = 31/117 (26%), Gaps = 46/117 (39%)

Query: 69  GNVV---FWVLKVVIYYTAAWCGPCK--------FIEPYVKDFAAMYTDVQFIKIDV-DW 116
             VV    W           WC PC+          E               + I+V D+
Sbjct: 59  NQVVILNAW---------GQWCAPCRSESDDLQIIHEELQAAGNGDTPGGTVLGINVRDY 109

Query: 117 LPEAAKAF---------DLID---------------VLP-TFVLVKRGKEIDRVVGA 148
             + A+ F          + D               V+P T VL K+ +     +  
Sbjct: 110 SRDIAQDFVTDNGLDYPSIYDPPFMTAASLGGVPASVIPTTIVLDKQHRPAAVFLRE 166

>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A Length = 151

 Score = 39.9 bits (94), Expect = 6e-05
 Identities = 25/112 (22%), Positives = 36/112 (32%), Gaps = 38/112 (33%)

Query: 69  GNVV---FWVLKVVIYYTAAWCGPCKFIE-PYVKDFAAMYTD--VQFIKIDVDWLPEAAK 122
           G  V   FW           WC PCK  E PY+ +    +    V+ + ++V     A  
Sbjct: 26  GKGVFLNFW---------GTWCEPCK-KEFPYMANQYKHFKSQGVEIVAVNVGESKIAVH 75

Query: 123 AF------------DL---------IDVLPTFVLV-KRGKEIDRVVGAKKDE 152
            F            D          +  LPT  L+   GK +  V G   + 
Sbjct: 76  NFMKSYGVNFPVVLDTDRQVLDAYDVSPLPTTFLINPEGKVVKVVTGTMTES 127

>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A Length = 123

 Score = 39.7 bits (92), Expect = 6e-05
 Identities = 15/93 (16%), Positives = 32/93 (34%), Gaps = 14/93 (15%)

Query: 77  KVVIYYTAA-------WCGPCKFIEPYVKD-FAAMYTDVQFIKIDVDWLPE------AAK 122
            +  Y+T +       WC  C   EP V++    +     FI   V   P         +
Sbjct: 26  TIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGCVFIYCQVGEKPYWKDPNNDFR 85

Query: 123 AFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQM 155
               +  +PT +     +++      + + ++M
Sbjct: 86  KNLKVTAVPTLLKYGTPQKLVESECLQANLVEM 118

>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis} Length = 148

 Score = 39.6 bits (93), Expect = 7e-05
 Identities = 20/108 (18%), Positives = 37/108 (34%), Gaps = 28/108 (25%)

Query: 77  KVVIYYTAAWCGPCKFIEPYVKDFAAMY---TDVQFIKIDVDWLPEAAKAF--------- 124
            +++ + A+WC P       +K     Y    +   + I +D   EA +           
Sbjct: 35  YLLLNFWASWCDPQPEANAELKRLNKEYKKNKNFAMLGISLDIDREAWETAIKKDTLSWD 94

Query: 125 ---DL------------IDVLPTFVLV-KRGKEIDRVVGAKKDELQMK 156
              D             I  LPT +L+   GK + R +  +    ++K
Sbjct: 95  QVCDFTGLSSETAKQYAILTLPTNILLSPTGKILARDIQGEALTGKLK 142

>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10 Length = 186

 Score = 40.1 bits (94), Expect = 7e-05
 Identities = 22/114 (19%), Positives = 36/114 (31%), Gaps = 44/114 (38%)

Query: 69  GNVV---FWVLKVVIYYTAAWCGPCKFIE-PYVKDFAAMY--TDVQFIKIDVD------- 115
           G  +    W         A WC PC+  E P + +        + + + I++D       
Sbjct: 60  GKTLLVNLW---------ATWCVPCR-KEMPALDELQGKLSGPNFEVVAINIDTRDPEKP 109

Query: 116 --------------------WLPEAAKAFDLIDVLPTFVLV-KRGKEIDRVVGA 148
                                + +  KA      +PT VLV  +G EI  + G 
Sbjct: 110 KTFLKEANLTRLGYFNDQKAKVFQDLKAIGRALGMPTSVLVDPQGCEIATIAGP 163

>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B} Length = 151

 Score = 39.7 bits (93), Expect = 8e-05
 Identities = 19/118 (16%), Positives = 34/118 (28%), Gaps = 36/118 (30%)

Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTD--VQFIKIDVDWLPEAAKAF----------- 124
            ++   A WCGPC+   P +  +        V  + I +D   +    F           
Sbjct: 27  RIVNLWATWCGPCRKEMPAMSKWYKAQKKGSVDMVGIALD-TSDNIGNFLKQTPVSYPIW 85

Query: 125 ---------------DLIDVLP-TFVLVKRGKEIDRVVGA-KKDEL-----QMKTEKR 160
                          + + VLP T V   +      + G   +  L        ++ R
Sbjct: 86  RYTGANSRNFMKTYGNTVGVLPFTVVEAPKCGYRQTITGEVNEKSLTDAVKLAHSKCR 143

>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix} Length = 165

 Score = 39.8 bits (93), Expect = 8e-05
 Identities = 17/118 (14%), Positives = 33/118 (27%), Gaps = 40/118 (33%)

Query: 77  KVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVD------------------WLP 118
            V++++ AAWC  C ++   +      Y ++  I ID                      P
Sbjct: 39  VVILWFMAAWCPSCVYMADLLDRLTEKYREISVIAIDFWTAEALKALGLNKPGYPPPDTP 98

Query: 119 EAAKAFDL---------------------IDVLPTFVLV-KRGKEIDRVVGAKKDELQ 154
           E  + F                       +  +   V++ K    +         EL+
Sbjct: 99  EMFRKFIANYGDPSWIMVMDDGSLVEKFNVRSIDYIVIMDKSSNVLYAGTTPSLGELE 156

>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15} Length = 158

 Score = 39.2 bits (92), Expect = 1e-04
 Identities = 19/106 (17%), Positives = 35/106 (33%), Gaps = 37/106 (34%)

Query: 69  GNVV---FWVLKVVIYYTAAWCGPCKFIE-PYVKDFAAMYTD--VQFIKIDV-------- 114
           G +V   FW         A+WC  C+  E P +      +    +  + ++V        
Sbjct: 41  GKIVLVNFW---------ASWCPYCR-DEMPSMDRLVKSFPKGDLVVLAVNVEKRFPEKY 90

Query: 115 -----------DWLPEAAKAFDLIDVLPTFVLV-KRGKEIDRVVGA 148
                      D   +  + +   + LP   +V ++G    RV G 
Sbjct: 91  RRAPVSFNFLSDATGQVQQRYG-ANRLPDTFIVDRKGIIRQRVTGG 135

>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A Length = 136

 Score = 38.8 bits (91), Expect = 1e-04
 Identities = 16/60 (26%), Positives = 22/60 (36%), Gaps = 14/60 (23%)

Query: 69  GNVV---FWVLKVVIYYTAAWCGPCKFIE-PYVKDFAAMYTDVQFIKIDVDWLPEAAKAF 124
           G      FW         A WC  C+  E P V   AA + +V F+ +       A + F
Sbjct: 25  GKPAVLWFW---------APWCPTCQ-GEAPVVGQVAASHPEVTFVGVAGLDQVPAMQEF 74

>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A Length = 144

 Score = 38.6 bits (90), Expect = 2e-04
 Identities = 22/111 (19%), Positives = 36/111 (32%), Gaps = 33/111 (29%)

Query: 66  NDGGNVVFWVLK---VVIYYTAAWCGPCKFIEPYVKDFAAMYTD---VQFIKIDVD---- 115
               ++    L    V  Y++A+WC P +   P + DF   + +    + + I  D    
Sbjct: 16  GAAADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAE 75

Query: 116 ------------WLP--------EAAKAFDLIDVLPTFVLVKR--GKEIDR 144
                        LP             FD +  +PT V V+   G  I  
Sbjct: 76  DFKDYYAKMPWLALPFEDRKGMEFLTTGFD-VKSIPTLVGVEADSGNIITT 125

>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus} Length = 133

 Score = 38.1 bits (89), Expect = 2e-04
 Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 4/71 (5%)

Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMY---TDVQFIKIDVDWLPEAAKAFDLIDVLPTFV 134
           V+I + A WCG CK +EP        Y    D+   K+D          +  ++  PT  
Sbjct: 28  VLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATANDITNDQYK-VEGFPTIY 86

Query: 135 LVKRGKEIDRV 145
               G + + +
Sbjct: 87  FAPSGDKKNPI 97

>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus} Length = 152

 Score = 38.5 bits (90), Expect = 2e-04
 Identities = 12/99 (12%), Positives = 26/99 (26%), Gaps = 27/99 (27%)

Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTD--VQFIKIDVD-------------------- 115
           V+I +T             +++    Y     +  +I +D                    
Sbjct: 38  VLIDFTVYNNAMSAAHNLALRELYNKYASQGFEIYQISLDGDEHFWKTSADNLPWVCVRD 97

Query: 116 ---WLPEAAKAFDLIDVLPTFVLV-KRGKEIDRVVGAKK 150
                      ++ +  LP+  LV +  +   R    K 
Sbjct: 98  ANGAYSSYISLYN-VTNLPSVFLVNRNNELSARGENIKD 135

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A Length = 481

 Score = 39.5 bits (91), Expect = 2e-04
 Identities = 16/71 (22%), Positives = 30/71 (42%), Gaps = 5/71 (7%)

Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMY---TDVQFIKIDVDWLPEAAKAFDLIDVLPTFV 134
           V+I + A WCG CK +EP  K+         ++   K+D     +    ++ +   PT  
Sbjct: 373 VLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDAT-ANDVPSPYE-VRGFPTIY 430

Query: 135 LVKRGKEIDRV 145
                K+++  
Sbjct: 431 FSPANKKLNPK 441

>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii} Length = 148

 Score = 38.5 bits (90), Expect = 2e-04
 Identities = 14/106 (13%), Positives = 33/106 (31%), Gaps = 27/106 (25%)

Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTD--VQFIKIDVDWLPEAAKAF----------- 124
            ++++  + CG C+   P + D+        +Q    +++   E    F           
Sbjct: 34  TILFFWDSQCGHCQQETPKLYDWWLKNRAKGIQVYAANIERKDEEWLKFIRSKKIGGWLN 93

Query: 125 --DL-----------IDVLPTFVLV-KRGKEIDRVVGAKKDELQMK 156
             D            I   P   ++ K    I + +G +  +  + 
Sbjct: 94  VRDSKNHTDFKITYDIYATPVLYVLDKNKVIIAKRIGYENLDDFLV 139

>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis} Length = 142

 Score = 38.1 bits (89), Expect = 3e-04
 Identities = 7/52 (13%), Positives = 16/52 (30%), Gaps = 5/52 (9%)

Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYT-----DVQFIKIDVDWLPEAAKAF 124
            ++++    C  C+  E    +  A         ++ + I  D   E     
Sbjct: 30  TMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENGTLRVLAIYPDENREEWATK 81

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A Length = 361

 Score = 38.9 bits (90), Expect = 3e-04
 Identities = 16/64 (25%), Positives = 23/64 (35%), Gaps = 2/64 (3%)

Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKI-DVDWLPEAAKAFDLIDVLPTFVLV 136
           V + + A WCG CK + P        Y D + I I  +D      +A   +   PT    
Sbjct: 270 VFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANEVEAVK-VHSFPTLKFF 328

Query: 137 KRGK 140
               
Sbjct: 329 PASA 332

>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A Length = 146

 Score = 37.8 bits (88), Expect = 3e-04
 Identities = 12/68 (17%), Positives = 24/68 (35%), Gaps = 6/68 (8%)

Query: 63  LNINDGGNVVFWVLK---VVIYYTAAWCGPCKFIEPYVKDFAAMYT---DVQFIKIDVDW 116
                 G V    L    V  Y++A+WC P +   P + +F   +    + + +    D 
Sbjct: 13  KLRRGDGEVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDE 72

Query: 117 LPEAAKAF 124
             +    +
Sbjct: 73  EEDGFAGY 80

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A Length = 229

 Score = 38.1 bits (88), Expect = 5e-04
 Identities = 18/87 (20%), Positives = 29/87 (33%), Gaps = 9/87 (10%)

Query: 81  YYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGK 140
            +    CG C        DFA     +    ID     + A+ F  +  +P  V+    K
Sbjct: 142 VFVTTSCGYCPSAAVMAWDFALANDYITSKVIDASENQDLAEQFQ-VVGVPKIVI---NK 197

Query: 141 EIDRVVGAKK-----DELQMKTEKRRN 162
            +   VGA+        +    EK + 
Sbjct: 198 GVAEFVGAQPENAFLGYIMAVYEKLKR 224

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A Length = 229

 Score = 38.1 bits (88), Expect = 5e-04
 Identities = 12/77 (15%), Positives = 28/77 (36%), Gaps = 7/77 (9%)

Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTD------VQFIKIDVDWLPEAAKAFDLIDVLP 131
           + ++  A  C  C+  E  +K+   +  +      ++          E  + +  +D +P
Sbjct: 25  IKLFSQAIGCESCQTAEELLKETVEVIGEAVGQDKIKLDIYSPFTHKEETEKYG-VDRVP 83

Query: 132 TFVLVKRGKEIDRVVGA 148
           T V+        R +G 
Sbjct: 84  TIVIEGDKDYGIRYIGL 100

>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B} Length = 153

 Score = 37.7 bits (88), Expect = 5e-04
 Identities = 22/112 (19%), Positives = 33/112 (29%), Gaps = 37/112 (33%)

Query: 69  GNVV---FWVLKVVIYYTAAWCGPCKFIEPYVKDFAAMYTD--VQFIKIDVDWLP-EAAK 122
           G V    FW            C  C    P +   A  Y +   Q + +     P E+ +
Sbjct: 28  GKVTLINFW---------FPSCPGCVSEMPKIIKTANDYKNKNFQVLAVAQPIDPIESVR 78

Query: 123 AF------------DL---------IDVLPTFVLV-KRGKEIDRVVGAKKDE 152
            +            D            V PT VL+ K+G+ +   VG     
Sbjct: 79  QYVKDYGLPFTVMYDADKAVGQAFGTQVYPTSVLIGKKGEILKTYVGEPDFG 130

>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A Length = 164

 Score = 37.4 bits (87), Expect = 5e-04
 Identities = 18/113 (15%), Positives = 28/113 (24%), Gaps = 42/113 (37%)

Query: 69  GNVV---FWVLKVVIYYTAAWCGPCKFIEPYVKDFAAMYTD--VQFIKIDVDWL------ 117
                  FW         A+WC  C       + +A          I +           
Sbjct: 38  DKPTLIKFW---------ASWCPLCLSELGQAEKWAQDAKFSSANLITVASPGFLHEKKD 88

Query: 118 PEAAKAFD---------LID------------VLPTFVLV-KRGKEIDRVVGA 148
            E  K +          + D            V P++ L+ K G     V G+
Sbjct: 89  GEFQKWYAGLNYPKLPVVTDNGGTIAQNLNISVYPSWALIGKDGDVQRIVKGS 141

>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda} Length = 143

 Score = 37.4 bits (87), Expect = 5e-04
 Identities = 18/97 (18%), Positives = 30/97 (30%), Gaps = 31/97 (31%)

Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTD----VQFIKIDVD------------------ 115
           +  Y++A WC PC+   P + D  +   D     + I +  D                  
Sbjct: 29  IGFYFSAHWCPPCRGFTPILADMYSELVDDSAPFEIIFVSSDRSEDDMFQYMMESHGDWL 88

Query: 116 -------WLPEAAKAFDLIDVLPTFVLVKR-GKEIDR 144
                          +  I  +P  V+VK+ G  I  
Sbjct: 89  AIPYRSGPASNVTAKYG-ITGIPALVIVKKDGTLISM 124

>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis} Length = 352

 Score = 38.0 bits (88), Expect = 6e-04
 Identities = 19/113 (16%), Positives = 24/113 (21%), Gaps = 43/113 (38%)

Query: 69  GNVV---FWVLKVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDV----------- 114
           G VV   FW         A  C  C+   P+V  +   Y D     I V           
Sbjct: 82  GKVVLIDFW---------AYSCINCQRAIPHVVGWYQAYKDSGLAVIGVHTPEYAFEKVP 132

Query: 115 ------------------DWLPEAAKAFDLIDVLPTFVLV-KRGKEIDRVVGA 148
                             D        +      P   L+   G       G 
Sbjct: 133 GNVAKGAANLGISYPIALDNNYATWTNYR-NRYWPAEYLIDATGTVRHIKFGE 184

>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15} Length = 154

 Score = 37.3 bits (87), Expect = 6e-04
 Identities = 21/110 (19%), Positives = 34/110 (30%), Gaps = 41/110 (37%)

Query: 69  GNVV---FWVLKVVIYYTAAWCGPCKFIE-PYVKDFAAMYTD--VQFIKIDV-------- 114
           G VV   FW         A WC PC+  E P +    A       + + + +        
Sbjct: 28  GQVVIVNFW---------ATWCPPCR-EEIPSMMRLNAAMAGKPFRMLCVSIDEGGKVAV 77

Query: 115 ---------------DWLPEAAKAFDLIDVLPTFVLV-KRGKEIDRVVGA 148
                          D      K +     +P   ++ + G  + +VVGA
Sbjct: 78  EEFFRKTGFTLPVLLDADKRVGKLYG-TTGVPETFVIDRHGVILKKVVGA 126

>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron} Length = 150

 Score = 37.0 bits (86), Expect = 7e-04
 Identities = 14/111 (12%), Positives = 38/111 (34%), Gaps = 32/111 (28%)

Query: 77  KVVIYYTAAWCGPCKFIE--PYVKDFAAMY---TDVQFIKIDVD---------------- 115
            ++I + A+W       +    +++    Y     +  + I +D                
Sbjct: 35  SLLINFWASWNDSISQKQSNSELREIYKKYKKNKYIGMLGISLDVDKQQWKDAIKRDTLD 94

Query: 116 ---------WLPEAAKAFDLIDVLPTFVLV-KRGKEIDRVVGAKKDELQMK 156
                       E AK +  I  +P  +L+   GK + + +  ++ + +++
Sbjct: 95  WEQVCDFGGLNSEVAKQYS-IYKIPANILLSSDGKILAKNLRGEELKKKIE 144

>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10 Length = 144

 Score = 36.9 bits (86), Expect = 8e-04
 Identities = 14/68 (20%), Positives = 28/68 (41%), Gaps = 6/68 (8%)

Query: 63  LNINDGGNVVFWVLK---VVIYYTAAWCGPCKFIEPYVKDFAAMYT---DVQFIKIDVDW 116
             ++  G V    L    V +Y++A+WC PC+   P + +F   +    + + + I  D 
Sbjct: 13  NLLSKSGEVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDE 72

Query: 117 LPEAAKAF 124
                  +
Sbjct: 73  NESDFHDY 80

>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} Length = 145

 Score = 36.9 bits (86), Expect = 8e-04
 Identities = 22/124 (17%), Positives = 45/124 (36%), Gaps = 42/124 (33%)

Query: 63  LNINDGGNVV---FWVLKVVIYYTAAWCGPCKFIE-PYVKDFAAMYTD--VQFIKIDVDW 116
           ++I + G      FW          +WC PCK  E P  + F   +    V+ + +++  
Sbjct: 28  ISIPNKGQKTILHFW---------TSWCPPCK-KELPQFQSFYDAHPSDSVKLVTVNLVN 77

Query: 117 LPE---AAKAF------------DL---------IDVLP-TFVLVKRGKEIDRVVGA-KK 150
             +     + F            D          I  +P +F+L ++G+     +G    
Sbjct: 78  SEQNQQVVEDFIKANKLTFPIVLDSKGELMKEYHIITIPTSFLLNEKGEIEKTKIGPMTA 137

Query: 151 DELQ 154
           ++L+
Sbjct: 138 EQLK 141

>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus} Length = 154

 Score = 36.9 bits (86), Expect = 8e-04
 Identities = 22/114 (19%), Positives = 29/114 (25%), Gaps = 39/114 (34%)

Query: 68  GGNVV--FWVLKVVIYYTAAWCGPCKFIE-PYVKDFAAMYTD-VQFIKIDVDWLPEAAKA 123
               V  FW         A+WC  CK  E P +   A         I  +     E    
Sbjct: 30  SKPAVIVFW---------ASWCTVCK-AEFPGLHRVAEETGVPFYVISREPRDTREVVLE 79

Query: 124 F------------DLIDV------------LP-TFVLVKRGKEIDRVVGAKKDE 152
           +               D              P TFV+ + GK +    G    E
Sbjct: 80  YMKTYPRFIPLLASDRDRPHEVAARFKVLGQPWTFVVDREGKVVALFAGRAGRE 133

>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis} Length = 142

 Score = 36.6 bits (85), Expect = 9e-04
 Identities = 6/53 (11%), Positives = 16/53 (30%), Gaps = 5/53 (9%)

Query: 77  KVVIYYTAAWCGPCKFIEPYVKDFAAMYT-----DVQFIKIDVDWLPEAAKAF 124
             +++     C  C  +   +K    +        ++ + I  D   +  K  
Sbjct: 33  YTLLFINNPGCHACAEMIEGLKASPVINGFTAAKKLKVLSIYPDEELDEWKKH 85

>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A Length = 121

 Score = 36.2 bits (84), Expect = 9e-04
 Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 10/70 (14%)

Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMY------TDVQFIKIDVDWLPEAAKAFDLIDVLP 131
           V+I + A WCG CK + P  ++  A+Y        V   K+D      A    D I   P
Sbjct: 28  VLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDAT----ANDVPDEIQGFP 83

Query: 132 TFVLVKRGKE 141
           T  L   G +
Sbjct: 84  TIKLYPAGAK 93

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	162
3zzx_A	105	Thioredoxin; oxidoreductase; 1.88A {Litopenaeus va	99.96
2av4_A	160	Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI	99.93
3d22_A	139	TRXH4, thioredoxin H-type; electron transport, cyt	99.92
1xfl_A	124	Thioredoxin H1; AT3G51030, structural genomics, pr	99.92
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	99.91
1ep7_A	112	Thioredoxin CH1, H-type; electron transport; 2.10A	99.91
2vm1_A	118	Thioredoxin, thioredoxin H isoform 1.; oxidoreduct	99.91
1ti3_A	113	Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul	99.91
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	99.91
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	99.91
3f3q_A	109	Thioredoxin-1; His TAG, electron transport, cytopl	99.91
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	99.91
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	99.91
2qsi_A	137	Putative hydrogenase expression/formation protein;	99.9
2vlu_A	122	Thioredoxin, thioredoxin H isoform 2.; oxidoreduct	99.9
1r26_A	125	Thioredoxin; redox-active disulfide, electron tran	99.9
2wz9_A	153	Glutaredoxin-3; protein binding; 1.55A {Homo sapie	99.9
2vim_A	104	Thioredoxin, TRX; thioredoxin fold, oxidoreductase	99.89
2pu9_C	111	TRX-F, thioredoxin F-type, chloroplast; protein-pr	99.89
2oe3_A	114	Thioredoxin-3; electron transport, alpha/beta sand	99.89
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	99.89
1xwb_A	106	Thioredoxin; dimerization, redox regulation, THI X	99.89
2qgv_A	140	Hydrogenase-1 operon protein HYAE; alpha-beta prot	99.89
3evi_A	118	Phosducin-like protein 2; alpha beta, 3-layer(ABA)	99.89
1syr_A	112	Thioredoxin; SGPP, structural genomics, PSI, prote	99.89
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	99.89
3gnj_A	111	Thioredoxin domain protein; APC92103, STR genomics	99.88
1w4v_A	119	Thioredoxin, mitochondrial; antioxidant enzyme, mi	99.88
3gix_A	149	Thioredoxin-like protein 4B; PRE-mRNA splicing, TX	99.88
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	99.88
1faa_A	124	Thioredoxin F; electron transport; 1.85A {Spinacia	99.88
3die_A	106	Thioredoxin, TRX; electron transport, SWAP domain,	99.88
2f51_A	118	Thioredoxin; electron transport; 1.90A {Trichomona	99.88
2trx_A	108	Thioredoxin; electron transport; 1.68A {Escherichi	99.87
1t00_A	112	Thioredoxin, TRX; redox regulation, multifunction	99.87
1dby_A	107	Chloroplast thioredoxin M CH2; thioredoxin CH2, ch	99.87
3cxg_A	133	Putative thioredoxin; malaria, structural GEN oxid	99.87
1nsw_A	105	Thioredoxin, TRX; thermostability, electron transp	99.87
2e0q_A	104	Thioredoxin; electron transport; 1.49A {Sulfolobus	99.86
2l6c_A	110	Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu	99.86
2voc_A	112	Thioredoxin; electron transport, homodimer, disulf	99.86
1thx_A	115	Thioredoxin, thioredoxin 2; oxido-reductase, elect	99.86
3uvt_A	111	Thioredoxin domain-containing protein 5; thioredox	99.86
3hxs_A	141	Thioredoxin, TRXP; electron transport; 2.00A {Bact	99.86
2ppt_A	155	Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc	99.86
3hz4_A	140	Thioredoxin; NYSGXRC, PSI-II, reduced form, protei	99.86
2i4a_A	107	Thioredoxin; acidophIle, disulfide exchange, oxido	99.86
2dbc_A	135	PDCL2, unnamed protein product; phosducin-like pro	99.86
3ul3_B	128	Thioredoxin, thioredoxin-2; PTEX, oxidoreductase;	99.86
2dj1_A	140	Protein disulfide-isomerase A4; protein ERP-72, ER	99.86
2yzu_A	109	Thioredoxin; redox protein, electron transport, st	99.86
1fb6_A	105	Thioredoxin M; electron transport; 2.10A {Spinacia	99.86
1wmj_A	130	Thioredoxin H-type; structural genomics, program f	99.86
2o8v_B	128	Thioredoxin 1; disulfide crosslinked complex, oxid	99.86
3emx_A	135	Thioredoxin; structural genomics, oxidoreductase,	99.86
2dml_A	130	Protein disulfide-isomerase A6; thioredoxin domain	99.85
3p2a_A	148	Thioredoxin 2, putative thioredoxin-like protein;	99.85
1x5d_A	133	Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC	99.85
2l5l_A	136	Thioredoxin; structural genomics, electron transpo	99.85
2i1u_A	121	Thioredoxin, TRX, MPT46; redox protein, electron t	99.85
3h79_A	127	Thioredoxin-like protein; thioredoxin fold, cataly	99.85
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.85
1qgv_A	142	Spliceosomal protein U5-15KD; snRNP, thioredoxin,	99.84
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	99.84
2l57_A	126	Uncharacterized protein; structural genomics, unkn	99.84
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	99.84
2dj0_A	137	Thioredoxin-related transmembrane protein 2; AVLA2	99.83
1x5e_A	126	Thioredoxin domain containing protein 1; TMX, TXND	99.83
1v98_A	140	Thioredoxin; oxidoreductase, structural genomics,	99.83
3iv4_A	112	Putative oxidoreductase; APC23140, meticillin-resi	99.83
3aps_A	122	DNAJ homolog subfamily C member 10; thioredoxin fo	99.82
2trc_P	217	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	99.82
3fk8_A	133	Disulphide isomerase; APC61824.1, xylella fastidio	99.82
1oaz_A	123	Thioredoxin 1; immune system, antibody/complex, an	99.82
1lu4_A	136	Soluble secreted antigen MPT53; thioredoxin-like f	99.82
2es7_A	142	Q8ZP25_salty, putative thiol-disulfide isomerase a	99.81
1mek_A	120	Protein disulfide isomerase; electron transport, r	99.81
1a0r_P	245	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	99.81
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	99.81
1zzo_A	136	RV1677; thioredoxin fold, structural genomics, PSI	99.8
2kuc_A	130	Putative disulphide-isomerase; structural genomics	99.8
1zma_A	118	Bacterocin transport accessory protein; alpha-beta	99.8
3or5_A	165	Thiol:disulfide interchange protein, thioredoxin p	99.79
2f9s_A	151	Thiol-disulfide oxidoreductase RESA; thioredoxin-l	99.79
3f9u_A	172	Putative exported cytochrome C biogenesis-related;	99.79
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	99.78
1nho_A	85	Probable thioredoxin; beta sheet, alpha helix, oxi	99.78
3ia1_A	154	THIO-disulfide isomerase/thioredoxin; oxidoreducta	99.78
3erw_A	145	Sporulation thiol-disulfide oxidoreductase A; thio	99.78
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	99.78
1wou_A	123	Thioredoxin -related protein, 14 kDa; electron tra	99.78
2dj3_A	133	Protein disulfide-isomerase A4; protein ERP-72, ER	99.78
2lja_A	152	Putative thiol-disulfide oxidoreductase; structura	99.78
2b5x_A	148	YKUV protein, TRXY; thioredoxin-like, oxidoreducta	99.77
4evm_A	138	Thioredoxin family protein; structural genomics, n	99.77
2lrn_A	152	Thiol:disulfide interchange protein; structural ge	99.77
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	99.77
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	99.77
3dml_A	116	Putative uncharacterized protein; thioredoxin, oxi	99.77
3ga4_A	178	Dolichyl-diphosphooligosaccharide-protein glycosyl	99.77
3gl3_A	152	Putative thiol:disulfide interchange protein DSBE;	99.77
3fkf_A	148	Thiol-disulfide oxidoreductase; structural genomic	99.77
3eyt_A	158	Uncharacterized protein SPOA0173; thioredoxin-like	99.77
3lor_A	160	Thiol-disulfide isomerase and thioredoxins; PSI, M	99.76
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	99.76
3raz_A	151	Thioredoxin-related protein; structural genomics,	99.76
2yj7_A	106	LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti	99.62
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	99.76
3eur_A	142	Uncharacterized protein; PSI2,MCSG, conserved prot	99.76
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	99.76
2djj_A	121	PDI, protein disulfide-isomerase; thioredoxin fold	99.76
3hcz_A	148	Possible thiol-disulfide isomerase; APC61559.2, cy	99.75
1z6n_A	167	Hypothetical protein PA1234; alpha-beta-alpha sand	99.75
3hdc_A	158	Thioredoxin family protein; ATCC53774, DSM 7210, ,	99.75
2ju5_A	154	Thioredoxin disulfide isomerase; protein, oxidored	99.75
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	99.74
3ewl_A	142	Uncharacterized conserved protein BF1870; alpha-be	99.74
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	99.74
3fw2_A	150	Thiol-disulfide oxidoreductase; structural genomic	99.74
3lwa_A	183	Secreted thiol-disulfide isomerase; thioredoxin, P	99.74
3kcm_A	154	Thioredoxin family protein; SGX, thioredoxin prote	99.74
3ha9_A	165	Uncharacterized thioredoxin-like protein; PSI, MCS	99.73
2l5o_A	153	Putative thioredoxin; structural genomics, unknown	99.73
2lrt_A	152	Uncharacterized protein; structural genomics, thio	99.73
2lst_A	130	Thioredoxin; structural genomics, NEW YORK structu	99.58
2b1k_A	168	Thiol:disulfide interchange protein DSBE; C-termin	99.73
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	99.73
1kng_A	156	Thiol:disulfide interchange protein CYCY; thioredo	99.73
3kh7_A	176	Thiol:disulfide interchange protein DSBE; TRX-like	99.72
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	99.72
2cvb_A	188	Probable thiol-disulfide isomerase/thioredoxin; re	99.71
2h30_A	164	Thioredoxin, peptide methionine sulfoxide reductas	99.71
1jfu_A	186	Thiol:disulfide interchange protein TLPA; thioredo	99.7
4fo5_A	143	Thioredoxin-like protein; AHPC/TSA family protein,	99.7
3ph9_A	151	Anterior gradient protein 3 homolog; thioredoxin f	99.7
1sen_A	164	Thioredoxin-like protein P19; endoplasmic reticulu	99.69
2rli_A	171	SCO2 protein homolog, mitochondrial; copper protei	99.69
2djk_A	133	PDI, protein disulfide-isomerase; thioredoxin fold	99.68
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	99.68
2ywi_A	196	Hypothetical conserved protein; uncharacterized co	99.68
2fgx_A	107	Putative thioredoxin; NET3, NESG, GFT-glutaredoxin	99.68
3kp8_A	106	Vkorc1/thioredoxin domain protein; blood coagulati	99.68
2ggt_A	164	SCO1 protein homolog, mitochondrial; copper chaper	99.67
1ttz_A	87	Conserved hypothetical protein; structural genomic	99.67
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	99.67
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	99.67
1i5g_A	144	Tryparedoxin II; electron transport; HET: TS5; 1.4	99.67
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	99.66
1o8x_A	146	Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot	99.66
3u5r_E	218	Uncharacterized protein; structural genomics, PSI-	99.66
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	99.65
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	99.65
3ira_A	173	Conserved protein; methanosarcina mazei,structural	99.65
2ls5_A	159	Uncharacterized protein; structural genomics, unkn	99.46
3s9f_A	165	Tryparedoxin; thioredoxin fold, disulfide reductas	99.65
2hyx_A	352	Protein DIPZ; thioredoxin fold, jelly-roll, struct	99.65
1ilo_A	77	Conserved hypothetical protein MTH895; beta-alpha-	99.64
3qcp_A	470	QSOX from trypanosoma brucei (tbqsox); ERV fold, t	99.64
3drn_A	161	Peroxiredoxin, bacterioferritin comigratory prote	99.64
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	99.63
2v1m_A	169	Glutathione peroxidase; selenium, selenocysteine,	99.63
2vup_A	190	Glutathione peroxidase-like protein; oxidoreductas	99.63
1o73_A	144	Tryparedoxin; electron transport, trypanosomatid,	99.63
3cmi_A	171	Peroxiredoxin HYR1; thioredoxin-like fold, oxidore	99.62
2c0g_A	248	ERP29 homolog, windbeutel protein; PDI-dbeta, PDI,	99.62
3kij_A	180	Probable glutathione peroxidase 8; human PDI-perox	99.62
2k6v_A	172	Putative cytochrome C oxidase assembly protein; th	99.62
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	99.61
3dwv_A	187	Glutathione peroxidase-like protein; alpha beta, 3	99.61
2lus_A	143	Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci	99.4
2p31_A	181	CL683, glutathione peroxidase 7; thioredoxin fold,	99.6
2dlx_A	153	UBX domain-containing protein 7; UAS domain, prote	99.6
2qc7_A	240	ERP31, ERP28, endoplasmic reticulum protein ERP29;	99.6
2f8a_A	208	Glutathione peroxidase 1; thioredoxin fold, struct	99.6
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	99.6
1we0_A	187	Alkyl hydroperoxide reductase C; peroxiredoxin, AH	99.59
1xvw_A	160	Hypothetical protein RV2238C/MT2298; thioredoxin f	99.59
2p5q_A	170	Glutathione peroxidase 5; thioredoxin fold, oxidor	99.59
2obi_A	183	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	99.57
2bmx_A	195	Alkyl hydroperoxidase C; peroxiredoxin, antioxidan	99.57
2jsy_A	167	Probable thiol peroxidase; solution structure, ant	99.56
2gs3_A	185	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	99.56
1zof_A	198	Alkyl hydroperoxide-reductase; decamer, toroide-sh	99.54
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	99.53
1xvq_A	175	Thiol peroxidase; thioredoxin fold, structural gen	99.53
1xzo_A	174	BSSCO, hypothetical protein YPMQ; thioredoxin-like	99.53
2b7k_A	200	SCO1 protein; metallochaperone, cytochrome C oxida	99.52
1qmv_A	197	Human thioredoxin peroxidase-B; peroxiredoxin, sul	99.49
1uul_A	202	Tryparedoxin peroxidase homologue; peroxiredoxin,	99.49
1wjk_A	100	C330018D20RIK protein; glutaredoxin, thioredoxin f	99.48
3gkn_A	163	Bacterioferritin comigratory protein; BCP, PRX, at	99.48
2h01_A	192	2-Cys peroxiredoxin; thioredoxin peroxidase, struc	99.47
2i3y_A	215	Epididymal secretory glutathione peroxidase; thior	99.47
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	99.46
1zye_A	220	Thioredoxin-dependent peroxide reductase; catenane	99.46
2i81_A	213	2-Cys peroxiredoxin; structural genomics consortiu	99.45
1psq_A	163	Probable thiol peroxidase; structural genomics, NY	99.45
1ego_A	85	Glutaredoxin; electron transport; NMR {Escherichia	99.44
2e7p_A	116	Glutaredoxin; thioredoxin fold, poplar, electron t	99.43
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	99.43
2yzh_A	171	Probable thiol peroxidase; redox protein, antioxid	99.43
2r37_A	207	Glutathione peroxidase 3; plasma, structural genom	99.43
3ztl_A	222	Thioredoxin peroxidase; oxidoreductase, reductase,	99.43
4g2e_A	157	Peroxiredoxin; redox protein, structural genomics,	99.42
2a4v_A	159	Peroxiredoxin DOT5; yeast nuclear thiol peroxidase	99.42
3me7_A	170	Putative uncharacterized protein; electron transfe	99.41
2k8s_A	80	Thioredoxin; dimer, structural genomics, PSI-2, pr	99.41
1q98_A	165	Thiol peroxidase, TPX; structural genomics, NYSGXR	99.39
3ixr_A	179	Bacterioferritin comigratory protein; alpha beta p	99.39
3p7x_A	166	Probable thiol peroxidase; thioredoxin fold, oxido	99.38
3kp9_A	291	Vkorc1/thioredoxin domain protein; warfarin, disul	99.38
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	99.37
4hde_A	170	SCO1/SENC family lipoprotein; structural genomics,	99.35
3zrd_A	200	Thiol peroxidase; oxidoreductase, 2Cys peroxiredox	99.34
2c0d_A	221	Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, th	99.31
4gqc_A	164	Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, f	99.31
3gyk_A	175	27KDA outer membrane protein; APC61738.2, siliciba	99.3
1n8j_A	186	AHPC, alkyl hydroperoxide reductase C22 protein; p	99.29
2pn8_A	211	Peroxiredoxin-4; thioredoxin, oxidoreductase, stru	99.27
1r7h_A	75	NRDH-redoxin; thioredoxin, glutaredoxin, redox pro	99.24
1eej_A	216	Thiol:disulfide interchange protein; oxidoreductas	99.23
1h75_A	81	Glutaredoxin-like protein NRDH; electron transport	99.23
3a2v_A	249	Probable peroxiredoxin; thioredoxin peroxidase, hy	99.23
2wfc_A	167	Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidan	99.21
1nm3_A	241	Protein HI0572; hybrid, peroxiredoxin, glutaredoxi	99.19
3qpm_A	240	Peroxiredoxin; oxidoreductase, thioredoxin fold, p	99.18
1tp9_A	162	Peroxiredoxin, PRX D (type II); oligomer, thioredo	99.18
1t3b_A	211	Thiol:disulfide interchange protein DSBC; oxidored	99.16
3uma_A	184	Hypothetical peroxiredoxin protein; nysgrc, PSI bi	99.15
3tjj_A	254	Peroxiredoxin-4; thioredoxin fold, sulfenylation,	99.11
3keb_A	224	Probable thiol peroxidase; structural genomics, AP	99.1
3mng_A	173	Peroxiredoxin-5, mitochondrial; peroxidase, PRXV,	99.08
3h93_A	192	Thiol:disulfide interchange protein DSBA; disulfid	99.08
1kte_A	105	Thioltransferase; redox-active center, electron tr	99.07
1prx_A	224	HORF6; peroxiredoxin, hydrogen peroxide, redox reg	99.05
1v58_A	241	Thiol:disulfide interchange protein DSBG; reduced	99.05
2hze_A	114	Glutaredoxin-1; thioredoxin fold, arsenic, dimethy	99.03
3hd5_A	195	Thiol:disulfide interchange protein DSBA; protein	99.02
1xcc_A	220	1-Cys peroxiredoxin; unknown function, structural	99.01
2lqo_A	92	Putative glutaredoxin RV3198.1/MT3292; TRX fold, o	99.01
2v2g_A	233	Peroxiredoxin 6; oxidoreductase, antioxidant enzym	98.99
2pwj_A	171	Mitochondrial peroxiredoxin; alpha and beta protei	98.99
2cq9_A	130	GLRX2 protein, glutaredoxin 2; glutathione-S-trans	98.99
3ic4_A	92	Glutaredoxin (GRX-1); structural genomics, PSI, MC	98.99
2ht9_A	146	Glutaredoxin-2; thioredoxin fold, iron-sulfur clus	98.89
3c1r_A	118	Glutaredoxin-1; oxidized form, oxidoreductase, cyt	98.88
3nzn_A	103	Glutaredoxin; structural genomics, PSI2, MCSG, pro	98.87
4eo3_A	322	Bacterioferritin comigratory protein/NADH dehydro;	98.81
3hz8_A	193	Thiol:disulfide interchange protein DSBA; thiol-ox	98.8
4dvc_A	184	Thiol:disulfide interchange protein DSBA; pilus as	98.79
3qmx_A	99	Glutaredoxin A, glutaredoxin 3; electron transport	98.76
2l4c_A	124	Endoplasmic reticulum resident protein 27; ERP27,	98.76
2klx_A	89	Glutaredoxin; thioredoxin type domain, ssgcid, ele	98.76
4f9z_D	227	Endoplasmic reticulum resident protein 27; thiored	98.75
2ec4_A	178	FAS-associated factor 1; UAS domain, protein FAF1,	98.75
2yan_A	105	Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {H	98.72
3gv1_A	147	Disulfide interchange protein; neisseria gonorrhoe	98.72
2znm_A	195	Thiol:disulfide interchange protein DSBA; thioredo	98.7
3feu_A	185	Putative lipoprotein; alpha-beta structure, struct	98.69
3l9v_A	189	Putative thiol-disulfide isomerase or thioredoxin;	98.67
1fov_A	82	Glutaredoxin 3, GRX3; active site disulfide, CIS P	98.65
3rhb_A	113	ATGRXC5, glutaredoxin-C5, chloroplastic; thioredox	98.64
2rem_A	193	Disulfide oxidoreductase; disulfide oxidoreductase	98.64
2khp_A	92	Glutaredoxin; thioredoxin type domain, ssgcid, ele	98.63
1z6m_A	175	Conserved hypothetical protein; structural genomic	98.57
3sbc_A	216	Peroxiredoxin TSA1; alpha-beta fold, peroxidase, c	98.53
1un2_A	197	DSBA, thiol-disulfide interchange protein; disulfi	98.52
3h8q_A	114	Thioredoxin reductase 3; oxidoreductase, structura	98.49
3ctg_A	129	Glutaredoxin-2; reduced form, electron transport,	98.46
3tue_A	219	Tryparedoxin peroxidase; thioredoxin fold, peroxir	98.41
3msz_A	89	Glutaredoxin 1; alpha-beta sandwich, center for st	98.39
3l9s_A	191	Thiol:disulfide interchange protein; thioredoxin-f	98.38
4f9z_D	227	Endoplasmic reticulum resident protein 27; thiored	98.32
1wik_A	109	Thioredoxin-like protein 2; picot homology 2 domai	98.25
2wci_A	135	Glutaredoxin-4; redox-active center, iron-sulfur c	98.23
3l4n_A	127	Monothiol glutaredoxin-6; C-terminal domain of GRX	98.05
3zyw_A	111	Glutaredoxin-3; metal binding protein; 1.84A {Homo	98.05
2axo_A	270	Hypothetical protein ATU2684; alpha beta protein.,	98.04
4f82_A	176	Thioredoxin reductase; structural genomics, niaid,	98.02
3gha_A	202	Disulfide bond formation protein D; BDBD, DSBA-lik	98.01
2h8l_A	252	Protein disulfide-isomerase A3; thioredoxin-like f	97.94
3ipz_A	109	Monothiol glutaredoxin-S14, chloroplastic; electro	97.94
1xiy_A	182	Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin	97.91
1aba_A	87	Glutaredoxin; electron transport; HET: MES; 1.45A	97.89
3bj5_A	147	Protein disulfide-isomerase; thioredoxin fold, cha	97.87
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	97.85
3gx8_A	121	Monothiol glutaredoxin-5, mitochondrial; TRX fold,	97.83
1t1v_A	93	SH3BGRL3, SH3 domain-binding glutamic acid-rich pr	97.83
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	97.81
3f4s_A	226	Alpha-DSBA1, putative uncharacterized protein; thi	97.78
2ct6_A	111	SH3 domain-binding glutamic acid-rich-like protein	97.75
2wem_A	118	Glutaredoxin-related protein 5; chromosome 14 open	97.75
3ec3_A	250	Protein disulfide-isomerase A4; thioredoxin-like f	97.74
1nm3_A	241	Protein HI0572; hybrid, peroxiredoxin, glutaredoxi	97.74
2xhf_A	171	Peroxiredoxin 5; oxidoreductase, antioxidant enzym	97.66
3bci_A	186	Disulfide bond protein A; thiol-disulfide oxidored	97.53
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	97.42
2jad_A	362	Yellow fluorescent protein glutaredoxin fusion pro	97.37
3gmf_A	205	Protein-disulfide isomerase; oxidoreductase, PSI-2	97.3
2kok_A	120	Arsenate reductase; brucellosis, zoonotic, oxidore	97.14
3kzq_A	208	Putative uncharacterized protein VP2116; protein w	97.12
1u6t_A	121	SH3 domain-binding glutamic acid-rich-like protein	96.99
1rw1_A	114	Conserved hypothetical protein YFFB; thioredoxin f	96.84
3c7m_A	195	Thiol:disulfide interchange protein DSBA-like; red	96.72
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	96.71
3ec3_A	250	Protein disulfide-isomerase A4; thioredoxin-like f	96.69
2wul_A	118	Glutaredoxin related protein 5; chromosome 14 open	96.57
2h8l_A	252	Protein disulfide-isomerase A3; thioredoxin-like f	96.54
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	96.48
2in3_A	216	Hypothetical protein; DSBA family, FRNE-like subfa	96.3
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	96.13
1t4y_A	105	Adaptive-response sensory-kinase SASA; alpha/beta	96.1
3tdg_A	273	DSBG, putative uncharacterized protein; thioredoxi	94.81
3gn3_A	182	Putative protein-disulfide isomerase; MCSG, PSI, s	94.39
3kgk_A	110	Arsenical resistance operon trans-acting represso;	94.25
1z3e_A	132	Regulatory protein SPX; bacterial transcription re	94.22
2imf_A	203	HCCA isomerase, 2-hydroxychromene-2-carboxylate is	94.18
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	93.98
3ktb_A	106	Arsenical resistance operon trans-acting represso;	93.96
3l78_A	120	Regulatory protein SPX; transcription, transcripti	93.72
3fz4_A	120	Putative arsenate reductase; APC61768, structural	92.63
3gn3_A	182	Putative protein-disulfide isomerase; MCSG, PSI, s	92.05
2g2q_A	124	Glutaredoxin-2; thioredoxin-fold, oxidoreductase,	91.95
3gkx_A	120	Putative ARSC family related protein; ARSC family	91.62
3c7m_A	195	Thiol:disulfide interchange protein DSBA-like; red	91.18
1s3c_A	141	Arsenate reductase; ARSC, arsenite, oxidoreductase	89.74
3rdw_A	121	Putative arsenate reductase; structural genomics,	89.32
3gl5_A	239	Putative DSBA oxidoreductase SCO1869; probable DSB	86.11
1un2_A	197	DSBA, thiol-disulfide interchange protein; disulfi	83.82
3fz5_A	202	Possible 2-hydroxychromene-2-carboxylate isomeras;	82.0
3ir4_A	218	Glutaredoxin 2; glutathione, IDP00895, structural	81.85
1wwj_A	105	Circadian clock protein KAIB; 1.90A {Synechocystis	81.2
3f0i_A	119	Arsenate reductase; structural genomics, IDP01300,	80.05

>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}

Probab=99.96  E-value=2.1e-28  Score=166.04  Aligned_cols=105  Identities=33%  Similarity=0.708  Sum_probs=99.0

Q ss_pred             ceeEeechhhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhhhhhhHHHHHH
Q 031271           21 LVMELQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYVKDF  100 (162)
Q Consensus        21 ~v~~i~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~~~l~~~  100 (162)
                      +|.+|++.++|++.+..+  +++++                                 +|+|||+||++|+.+.|.++++
T Consensus         1 MV~~i~~~~~f~~~l~~~--~~k~v---------------------------------vv~F~a~wC~~C~~~~p~~~~~   45 (105)
T 3zzx_A            1 MVYQVKDQEDFTKQLNEA--GNKLV---------------------------------VIDFYATWCGPCKMIAPKLEEL   45 (105)
T ss_dssp             CCEECCSHHHHHHHHHHT--TTSEE---------------------------------EEEEECTTCHHHHHHHHHHHHH
T ss_pred             CeEEeCCHHHHHHHHHhc--CCCEE---------------------------------EEEEECCCCCCccCCCcchhhh
Confidence            578899999999999864  46888                                 9999999999999999999999


Q ss_pred             HHhcCCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCCCHHHHHHHHHHHh
Q 031271          101 AAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQMKTEKRR  161 (162)
Q Consensus       101 ~~~~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~~~~~l~~~l~~~~  161 (162)
                      ++.++++.|+.||+|++++++++|+| .++||+++|++|+.+.++.|.++++|+++|++|.
T Consensus        46 ~~~~~~~~~~~vd~d~~~~l~~~~~V-~~~PT~~~~~~G~~v~~~~G~~~~~l~~~i~k~K  105 (105)
T 3zzx_A           46 SQSMSDVVFLKVDVDECEDIAQDNQI-ACMPTFLFMKNGQKLDSLSGANYDKLLELVEKNK  105 (105)
T ss_dssp             HHHCTTEEEEEEETTTCHHHHHHTTC-CBSSEEEEEETTEEEEEEESCCHHHHHHHHHHHC
T ss_pred             hhccCCeEEEEEecccCHHHHHHcCC-CeecEEEEEECCEEEEEEeCcCHHHHHHHHHhcC
Confidence            99999999999999999999999999 9999999999999999999999999999999874

>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}

Probab=99.93  E-value=1.3e-25  Score=161.56  Aligned_cols=105  Identities=16%  Similarity=0.227  Sum_probs=95.9

Q ss_pred             ceeEeechhhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhhhhhhHHHHHH
Q 031271           21 LVMELQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYVKDF  100 (162)
Q Consensus        21 ~v~~i~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~~~l~~~  100 (162)
                      ++..+++.++|++.+..  ++++++                                 ||+|||+||+||+++.|.|+++
T Consensus        22 mv~~l~t~~~f~~~v~~--~~~k~V---------------------------------VVdF~A~WCgPCk~m~Pvleel   66 (160)
T 2av4_A           22 MLQHLNSGWAVDQAIVN--EDERLV---------------------------------CIRFGHDYDPDCMKMDELLYKV   66 (160)
T ss_dssp             CCEECCSHHHHHHHHHH--CSSSEE---------------------------------EEEEECTTSHHHHHHHHHHHHH
T ss_pred             hhhccCCHHHHHHHHHh--cCCCEE---------------------------------EEEEECCCChhHHHHHHHHHHH
Confidence            38899999999998853  357888                                 9999999999999999999999


Q ss_pred             HHhcCC-cEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEE--E-------EEcCC-C-HHHHHHHHHHHh
Q 031271          101 AAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEI--D-------RVVGA-K-KDELQMKTEKRR  161 (162)
Q Consensus       101 ~~~~~~-v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i--~-------~~~g~-~-~~~l~~~l~~~~  161 (162)
                      ++++++ +.|++||+|++++++.+|+| ..+||+++|++|+.+  +       ++.|. . .++|+++|++++
T Consensus        67 A~e~~~~v~f~kVDVDe~~e~a~~y~V-~siPT~~fFk~G~~v~vd~Gtgd~~k~vGa~~~k~~l~~~ie~~~  138 (160)
T 2av4_A           67 ADDIKNFCVIYLVDITEVPDFNTMYEL-YDPVSVMFFYRNKHMMIDLGTGNNNKINWPMNNKQEFIDIVETIF  138 (160)
T ss_dssp             HHHHTTTEEEEEEETTTCCTTTTTTTC-CSSEEEEEEETTEEEEEECSSSCCSCBCSCCCCHHHHHHHHHHHH
T ss_pred             HHHccCCcEEEEEECCCCHHHHHHcCC-CCCCEEEEEECCEEEEEecCCCCcCeEEeecCCHHHHHHHHHHHH
Confidence            999987 99999999999999999999 999999999999998  5       89998 4 889999998765

>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A

Probab=99.92  E-value=6.5e-24  Score=149.04  Aligned_cols=115  Identities=28%  Similarity=0.612  Sum_probs=104.9

Q ss_pred             CCcccCCCceeEeechhhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhhhh
Q 031271           13 GFIHAKTPLVMELQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKF   92 (162)
Q Consensus        13 ~~~~~~~~~v~~i~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~   92 (162)
                      .......+.+..+.+.++|++.+..+...++++                                 +|+||++||++|+.
T Consensus        17 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~k~v---------------------------------vv~f~a~wC~~C~~   63 (139)
T 3d22_A           17 PHIELAGGNVHLITTKERWDQKLSEASRDGKIV---------------------------------LANFSARWCGPSRQ   63 (139)
T ss_dssp             CCCCSSCTTCEEECSHHHHHHHHHHHHHHTCCE---------------------------------EEEEECTTCHHHHH
T ss_pred             ccccccCCcEEEeCCHHHHHHHHHHHhhcCCEE---------------------------------EEEEECCCCHHHHH
Confidence            344445677899999999999998876678888                                 99999999999999


Q ss_pred             hhHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCCCHHHHHHHHHHHh
Q 031271           93 IEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQMKTEKRR  161 (162)
Q Consensus        93 ~~~~l~~~~~~~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~~~~~l~~~l~~~~  161 (162)
                      +.|.|++++++++++.|+.||++.+++++++|++ .++||++++++|+.+.++.|.+.+.|.++|++++
T Consensus        64 ~~~~l~~l~~~~~~v~~~~v~~~~~~~~~~~~~v-~~~Pt~~~~~~G~~~~~~~G~~~~~l~~~l~~~~  131 (139)
T 3d22_A           64 IAPYYIELSENYPSLMFLVIDVDELSDFSASWEI-KATPTFFFLRDGQQVDKLVGANKPELHKKITAIL  131 (139)
T ss_dssp             HHHHHHHHHHHCTTSEEEEEETTTSHHHHHHTTC-CEESEEEEEETTEEEEEEESCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCEEEEEeCcccHHHHHHcCC-CcccEEEEEcCCeEEEEEeCCCHHHHHHHHHHHh
Confidence            9999999999998999999999999999999999 9999999999999999999999999999998765

>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1

Probab=99.92  E-value=7.8e-24  Score=146.76  Aligned_cols=111  Identities=40%  Similarity=0.771  Sum_probs=103.6

Q ss_pred             CCCceeEeechhhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhhhhhhHHH
Q 031271           18 KTPLVMELQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYV   97 (162)
Q Consensus        18 ~~~~v~~i~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~~~l   97 (162)
                      ..+.|..+.+.++|++.+..+...++++                                 +|+||++||++|+.+.|.|
T Consensus        14 ~~~~v~~l~~~~~~~~~l~~~~~~~k~v---------------------------------vv~f~a~wC~~C~~~~~~l   60 (124)
T 1xfl_A           14 EEGQVIACHTVETWNEQLQKANESKTLV---------------------------------VVDFTASWCGPCRFIAPFF   60 (124)
T ss_dssp             CCSCCEEESSHHHHHHHHHHHHHTTCEE---------------------------------EEEEECTTCHHHHHHHHHH
T ss_pred             CCCcEEEeCCHHHHHHHHHHhhhcCCEE---------------------------------EEEEECCCCHHHHHHHHHH
Confidence            4577899999999999999876678888                                 9999999999999999999


Q ss_pred             HHHHHhcCCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCCCHHHHHHHHHHHhC
Q 031271           98 KDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQMKTEKRRN  162 (162)
Q Consensus        98 ~~~~~~~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~~~~~l~~~l~~~~~  162 (162)
                      ++++++++++.|+.||++.+++++++|++ .++||++++++|+.+.++.|.+++.|+++|+++++
T Consensus        61 ~~l~~~~~~v~~~~vd~d~~~~l~~~~~v-~~~Pt~~~~~~G~~~~~~~G~~~~~l~~~l~~~l~  124 (124)
T 1xfl_A           61 ADLAKKLPNVLFLKVDTDELKSVASDWAI-QAMPTFMFLKEGKILDKVVGAKKDELQSTIAKHLA  124 (124)
T ss_dssp             HHHHHHCSSEEEEEEETTTSHHHHHHTTC-CSSSEEEEEETTEEEEEEESCCHHHHHHHHHHHCC
T ss_pred             HHHHHHCCCcEEEEEECccCHHHHHHcCC-CccCEEEEEECCEEEEEEeCCCHHHHHHHHHHhcC
Confidence            99999999999999999999999999999 99999999999999999999999999999998763

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1

Probab=99.91  E-value=2e-23  Score=140.26  Aligned_cols=105  Identities=25%  Similarity=0.431  Sum_probs=96.5

Q ss_pred             ceeEeechhhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhhhhhhHHHHHH
Q 031271           21 LVMELQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYVKDF  100 (162)
Q Consensus        21 ~v~~i~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~~~l~~~  100 (162)
                      .+..+++.++|++.+..  ..++++                                 +|+||++||++|+.+.|.++++
T Consensus         2 ~v~~i~~~~~~~~~~~~--~~~~~v---------------------------------~v~f~a~wC~~C~~~~~~~~~~   46 (107)
T 1gh2_A            2 GVKPVGSDPDFQPELSG--AGSRLA---------------------------------VVKFTMRGCGPCLRIAPAFSSM   46 (107)
T ss_dssp             CEEEECSGGGHHHHHHH--TTTSCE---------------------------------EEEEECSSCHHHHHHHHHHHHH
T ss_pred             ceEEecCHHHHHHHHHh--CCCCEE---------------------------------EEEEECCCChhhHHHHHHHHHH
Confidence            47788899999999864  246778                                 9999999999999999999999


Q ss_pred             HHhcCCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCCCHHHHHHHHHHHh
Q 031271          101 AAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQMKTEKRR  161 (162)
Q Consensus       101 ~~~~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~~~~~l~~~l~~~~  161 (162)
                      +++++++.|+.+|++.+++++++|++ .++||+++|++|+.+.++.|.+.++|.++|++++
T Consensus        47 ~~~~~~~~~~~vd~~~~~~~~~~~~v-~~~Pt~~~~~~G~~~~~~~G~~~~~l~~~l~~~l  106 (107)
T 1gh2_A           47 SNKYPQAVFLEVDVHQCQGTAATNNI-SATPTFQFFRNKVRIDQYQGADAVGLEEKIKQHL  106 (107)
T ss_dssp             HHHCTTSEEEEEETTTSHHHHHHTTC-CSSSEEEEEETTEEEEEEESSCHHHHHHHHHHHH
T ss_pred             HHHCCCcEEEEEECccCHHHHHhcCC-CcccEEEEEECCeEEEEEeCCCHHHHHHHHHHhc
Confidence            99998899999999999999999999 9999999999999999999997777999999875

>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A

Probab=99.91  E-value=1.8e-23  Score=141.08  Aligned_cols=109  Identities=35%  Similarity=0.677  Sum_probs=100.4

Q ss_pred             CceeEeechhhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhhhhhhHHHHH
Q 031271           20 PLVMELQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYVKD   99 (162)
Q Consensus        20 ~~v~~i~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~~~l~~   99 (162)
                      +.+..+++.++|++.+..+...++++                                 +|+||++||++|+.+.|.|++
T Consensus         2 ~~v~~i~~~~~~~~~l~~~~~~~~~~---------------------------------vv~f~~~~C~~C~~~~~~l~~   48 (112)
T 1ep7_A            2 GSVIVIDSKAAWDAQLAKGKEEHKPI---------------------------------VVDFTATWCGPCKMIAPLFET   48 (112)
T ss_dssp             CSEEEECSHHHHHHHHHHHHHHTCCE---------------------------------EEEEECTTCHHHHHHHHHHHH
T ss_pred             CcEEEecCHHHHHHHHHhhcccCCeE---------------------------------EEEEECCCCHHHHHHHHHHHH
Confidence            46889999999999998765557888                                 999999999999999999999


Q ss_pred             HHHhcC-CcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCCCHHHHHHHHHHHhC
Q 031271          100 FAAMYT-DVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQMKTEKRRN  162 (162)
Q Consensus       100 ~~~~~~-~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~~~~~l~~~l~~~~~  162 (162)
                      +++.++ ++.|+.+|++.+++++++|++ .++||++++++|+.+.++.|.+.+.|.++|+++++
T Consensus        49 ~~~~~~~~~~~~~vd~~~~~~~~~~~~v-~~~Pt~~~~~~G~~~~~~~G~~~~~l~~~l~~~l~  111 (112)
T 1ep7_A           49 LSNDYAGKVIFLKVDVDAVAAVAEAAGI-TAMPTFHVYKDGVKADDLVGASQDKLKALVAKHAA  111 (112)
T ss_dssp             HHHHTTTTSEEEEEETTTTHHHHHHHTC-CBSSEEEEEETTEEEEEEESCCHHHHHHHHHHHHC
T ss_pred             HHHHcCCCeEEEEEECCchHHHHHHcCC-CcccEEEEEECCeEEEEEcCCCHHHHHHHHHHHhc
Confidence            999998 699999999999999999999 99999999999999999999999999999998763

>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A

Probab=99.91  E-value=2.2e-23  Score=141.76  Aligned_cols=111  Identities=32%  Similarity=0.743  Sum_probs=102.9

Q ss_pred             CCCceeEeechhhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhhhhhhHHH
Q 031271           18 KTPLVMELQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYV   97 (162)
Q Consensus        18 ~~~~v~~i~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~~~l   97 (162)
                      +.+.+..+.+.++|++.+..+...++++                                 +|+||++||++|+.+.|.|
T Consensus         4 ~~~~v~~i~~~~~~~~~~~~~~~~~~~~---------------------------------vv~f~~~~C~~C~~~~~~l   50 (118)
T 2vm1_A            4 EEGAVIACHTKQEFDTHMANGKDTGKLV---------------------------------IIDFTASWCGPCRVIAPVF   50 (118)
T ss_dssp             -CCCEEECCSHHHHHHHHHHHHHHTCCE---------------------------------EEEEECTTCHHHHHHHHHH
T ss_pred             CCCceEEecCHHHHHHHHHhcccCCCEE---------------------------------EEEEECCCCHhHHHHhHHH
Confidence            3567899999999999999877678888                                 9999999999999999999


Q ss_pred             HHHHHhcCCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCCCHHHHHHHHHHHhC
Q 031271           98 KDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQMKTEKRRN  162 (162)
Q Consensus        98 ~~~~~~~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~~~~~l~~~l~~~~~  162 (162)
                      +++++.++++.|+.+|++.+++++++|++ .++||++++++|+.+.++.|.+.+.|.++|+++++
T Consensus        51 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~v-~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~l~~~~~  114 (118)
T 2vm1_A           51 AEYAKKFPGAIFLKVDVDELKDVAEAYNV-EAMPTFLFIKDGEKVDSVVGGRKDDIHTKIVALMG  114 (118)
T ss_dssp             HHHHHHCTTSEEEEEETTTSHHHHHHTTC-CSBSEEEEEETTEEEEEEESCCHHHHHHHHHHHHC
T ss_pred             HHHHHHCCCcEEEEEEcccCHHHHHHcCC-CcCcEEEEEeCCeEEEEecCCCHHHHHHHHHHHhc
Confidence            99999999999999999999999999999 99999999999999999999999999999998753

>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1

Probab=99.91  E-value=1.8e-23  Score=141.21  Aligned_cols=110  Identities=35%  Similarity=0.754  Sum_probs=102.7

Q ss_pred             CCCceeEeechhhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhhhhhhHHH
Q 031271           18 KTPLVMELQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYV   97 (162)
Q Consensus        18 ~~~~v~~i~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~~~l   97 (162)
                      +.+.+..+.+.++|++.+..+...++++                                 +|+||++||++|+.+.|.+
T Consensus         2 ~~~~v~~i~~~~~~~~~~~~~~~~~~~~---------------------------------vv~f~~~~C~~C~~~~~~l   48 (113)
T 1ti3_A            2 EEGQVIACHTVDTWKEHFEKGKGSQKLI---------------------------------VVDFTASWCPPCKMIAPIF   48 (113)
T ss_dssp             CCCCEEEECSHHHHHHHHHHHTTSSSEE---------------------------------EEEEECSSCHHHHHHHHHH
T ss_pred             CCCceeEeccHHHHHHHHHHhhhcCCeE---------------------------------EEEEECCCCHHHHHHHHHH
Confidence            3567999999999999999877678888                                 9999999999999999999


Q ss_pred             HHHHHhcCCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCCCHHHHHHHHHHHh
Q 031271           98 KDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQMKTEKRR  161 (162)
Q Consensus        98 ~~~~~~~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~~~~~l~~~l~~~~  161 (162)
                      +++.+.++++.|+.+|++.+++++++|++ .++||++++++|+.+.++.|.+++.|.++|++++
T Consensus        49 ~~~~~~~~~v~~~~v~~~~~~~~~~~~~v-~~~Pt~~~~~~G~~~~~~~g~~~~~l~~~l~~~~  111 (113)
T 1ti3_A           49 AELAKKFPNVTFLKVDVDELKAVAEEWNV-EAMPTFIFLKDGKLVDKTVGADKDGLPTLVAKHA  111 (113)
T ss_dssp             HHHHHHCSSEEEEEEETTTCHHHHHHHHC-SSTTEEEEEETTEEEEEEECCCTTHHHHHHHHHH
T ss_pred             HHHHHhCCCcEEEEEEccccHHHHHhCCC-CcccEEEEEeCCEEEEEEecCCHHHHHHHHHHhh
Confidence            99999999999999999999999999999 9999999999999999999998999999999875

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...

Probab=99.91  E-value=2.3e-23  Score=138.94  Aligned_cols=105  Identities=31%  Similarity=0.730  Sum_probs=97.7

Q ss_pred             ceeEeechhhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhhhhhhHHHHHH
Q 031271           21 LVMELQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYVKDF  100 (162)
Q Consensus        21 ~v~~i~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~~~l~~~  100 (162)
                      ++..+++.++|++.++.+  +++++                                 +|+||++||++|+.+.|.++++
T Consensus         1 mv~~i~~~~~~~~~l~~~--~~~~~---------------------------------~v~f~~~~C~~C~~~~~~~~~~   45 (105)
T 3m9j_A            1 MVKQIESKTAFQEALDAA--GDKLV---------------------------------VVDFSATWCGPCKMIKPFFHSL   45 (105)
T ss_dssp             CCEECCSHHHHHHHHHHT--TTSCE---------------------------------EEEEECTTCHHHHHHHHHHHHH
T ss_pred             CeEEcCCHHHHHHHHHhc--CCCeE---------------------------------EEEEECCCChhhHHHHHHHHHH
Confidence            467889999999999764  47788                                 9999999999999999999999


Q ss_pred             HHhcCCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCCCHHHHHHHHHHHh
Q 031271          101 AAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQMKTEKRR  161 (162)
Q Consensus       101 ~~~~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~~~~~l~~~l~~~~  161 (162)
                      ++.++++.|+.+|++++++++++|++ .++||+++|++|+.+.++.|.+.+.|.++|++++
T Consensus        46 ~~~~~~~~~~~vd~~~~~~~~~~~~v-~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~l~~~l  105 (105)
T 3m9j_A           46 SEKYSNVIFLEVDVDDCQDVASESEV-KSMPTFQFFKKGQKVGEFSGANKEKLEATINELV  105 (105)
T ss_dssp             HHHSTTSEEEEEETTTCHHHHHHTTC-CBSSEEEEEETTEEEEEEESSCHHHHHHHHHHHC
T ss_pred             HHHccCeEEEEEEhhhhHHHHHHcCC-CcCcEEEEEECCeEEEEEeCCCHHHHHHHHHHhC
Confidence            99999999999999999999999999 9999999999999999999999999999998864

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*

Probab=99.91  E-value=1.3e-23  Score=143.78  Aligned_cols=106  Identities=30%  Similarity=0.673  Sum_probs=95.9

Q ss_pred             CceeEeechhhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhhhhhhHHHHH
Q 031271           20 PLVMELQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYVKD   99 (162)
Q Consensus        20 ~~v~~i~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~~~l~~   99 (162)
                      +.-....+.++|++.++..  .++++                                 +|+||++||++|+.+.|.|++
T Consensus        11 ~~~~~~~t~~~f~~~l~~~--~~k~v---------------------------------lv~F~a~wC~~C~~~~p~l~~   55 (116)
T 3qfa_C           11 GSVKQIESKTAFQEALDAA--GDKLV---------------------------------VVDFSATWCGPSKMIKPFFHS   55 (116)
T ss_dssp             -CCBCCCCHHHHHHHHHHH--TTSCE---------------------------------EEEEECTTCHHHHHHHHHHHH
T ss_pred             CcccCCCCHHHHHHHHHhc--CCCEE---------------------------------EEEEECCCCHHHHHHHHHHHH
Confidence            3344556789999999754  47888                                 999999999999999999999


Q ss_pred             HHHhcCCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCCCHHHHHHHHHHHh
Q 031271          100 FAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQMKTEKRR  161 (162)
Q Consensus       100 ~~~~~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~~~~~l~~~l~~~~  161 (162)
                      ++++++++.|+.||++++++++++|+| .++||+++|++|+.+.++.|.+.+.|+++|++++
T Consensus        56 l~~~~~~v~~~~vd~d~~~~l~~~~~v-~~~Pt~~~~~~G~~~~~~~G~~~~~l~~~l~~~l  116 (116)
T 3qfa_C           56 LSEKYSNVIFLEVDVDDCQDVASECEV-KSMPTFQFFKKGQKVGEFSGANKEKLEATINELV  116 (116)
T ss_dssp             HHTTCTTSEEEEEETTTTHHHHHHTTC-CSSSEEEEESSSSEEEEEESCCHHHHHHHHHHHC
T ss_pred             HHHHCCCCEEEEEECCCCHHHHHHcCC-ccccEEEEEeCCeEEEEEcCCCHHHHHHHHHHhC
Confidence            999999999999999999999999999 9999999999999999999999999999998864

>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B

Probab=99.91  E-value=4.3e-23  Score=139.64  Aligned_cols=105  Identities=33%  Similarity=0.707  Sum_probs=95.0

Q ss_pred             CCceeEeechhhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhhhhhhHHHH
Q 031271           19 TPLVMELQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYVK   98 (162)
Q Consensus        19 ~~~v~~i~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~~~l~   98 (162)
                      .+......+.++|++.++    .++++                                 +|+||++||++|+.+.|.++
T Consensus         5 ~~~~~~~~~~~~f~~~~~----~~k~v---------------------------------lv~f~a~wC~~C~~~~p~l~   47 (109)
T 3f3q_A            5 HHMVTQFKTASEFDSAIA----QDKLV---------------------------------VVDFYATWCGPCKMIAPMIE   47 (109)
T ss_dssp             CCCCEECCSHHHHHHHTT----SSSCE---------------------------------EEEEECTTCHHHHHHHHHHH
T ss_pred             cccccCCCCHHHHHHHHh----cCCEE---------------------------------EEEEECCcCHhHHHHHHHHH
Confidence            344555667788888774    37778                                 99999999999999999999


Q ss_pred             HHHHhcCCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCCCHHHHHHHHHHHh
Q 031271           99 DFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQMKTEKRR  161 (162)
Q Consensus        99 ~~~~~~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~~~~~l~~~l~~~~  161 (162)
                      +++++++++.|+.||++.+++++++|+| .++||+++|++|+.+.++.|.+++.|+++|++++
T Consensus        48 ~l~~~~~~~~~~~vd~~~~~~l~~~~~v-~~~Pt~~~~~~G~~~~~~~G~~~~~l~~~i~~~l  109 (109)
T 3f3q_A           48 KFSEQYPQADFYKLDVDELGDVAQKNEV-SAMPTLLLFKNGKEVAKVVGANPAAIKQAIAANA  109 (109)
T ss_dssp             HHHHHCTTSEEEEEETTTCHHHHHHTTC-CSSSEEEEEETTEEEEEEESSCHHHHHHHHHHHC
T ss_pred             HHHHHCCCCEEEEEECCCCHHHHHHcCC-CccCEEEEEECCEEEEEEeCCCHHHHHHHHHhhC
Confidence            9999999999999999999999999999 9999999999999999999999999999999864

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}

Probab=99.91  E-value=3.3e-24  Score=143.89  Aligned_cols=85  Identities=24%  Similarity=0.289  Sum_probs=71.4

Q ss_pred             eEEEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHH
Q 031271           77 KVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQM  155 (162)
Q Consensus        77 ~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~  155 (162)
                      +++|+||++||++|+.+.|.++++++.++++.|+.||++.+++++++|++ .++||+++|++|+.+.++.|. +.+.|.+
T Consensus        20 ~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v-~~~Pt~~~~~~G~~~~~~~g~~~~~~l~~   98 (105)
T 4euy_A           20 LVLLFIKTENCGVCDVMLRKVNYVLENYNYVEKIEILLQDMQEIAGRYAV-FTGPTVLLFYNGKEILRESRFISLENLER   98 (105)
T ss_dssp             EEEEEEEESSCHHHHHHHHHHHHHHHTCTTEEEEEEEECCC----------CCCCEEEEEETTEEEEEEESSCCHHHHHH
T ss_pred             CEEEEEeCCCCcchHHHHHHHHHHHHHcCCceEEEEECCCCHHHHHhcCC-CCCCEEEEEeCCeEEEEEeCCcCHHHHHH
Confidence            33999999999999999999999999998999999999999999999999 999999999999999999998 8999999


Q ss_pred             HHHHHhC
Q 031271          156 KTEKRRN  162 (162)
Q Consensus       156 ~l~~~~~  162 (162)
                      +|+++++
T Consensus        99 ~l~~~~e  105 (105)
T 4euy_A           99 TIQLFEE  105 (105)
T ss_dssp             HHHTTC-
T ss_pred             HHHHhhC
Confidence            9998764

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}

Probab=99.91  E-value=4.1e-23  Score=139.62  Aligned_cols=106  Identities=24%  Similarity=0.543  Sum_probs=93.6

Q ss_pred             ceeEeechhhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhhhhhhHHHHHH
Q 031271           21 LVMELQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYVKDF  100 (162)
Q Consensus        21 ~v~~i~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~~~l~~~  100 (162)
                      .|..+++.++|++.+.. +..++++                                 +|+||++||++|+.+.|.++++
T Consensus         1 ~v~~i~~~~~~~~~~~~-~~~~~~~---------------------------------~v~f~a~wC~~C~~~~~~~~~~   46 (112)
T 3d6i_A            1 PVIEINDQEQFTYLTTT-AAGDKLI---------------------------------VLYFHTSWAEPCKALKQVFEAI   46 (112)
T ss_dssp             CEEEECCHHHHHHHHTT-TTTTCCE---------------------------------EEEEECCC--CHHHHHHHHHHH
T ss_pred             CccccCCHHHHHHHHhc-ccCCCEE---------------------------------EEEEECCCCHHHHHHHHHHHHH
Confidence            36788888999998875 3457777                                 9999999999999999999999


Q ss_pred             HHh--cCCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCCCHHHHHHHHHHHh
Q 031271          101 AAM--YTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQMKTEKRR  161 (162)
Q Consensus       101 ~~~--~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~~~~~l~~~l~~~~  161 (162)
                      +++  ++++.|+.+|++.+++++++|++ .++||+++|++|+.+.++.|.++++|.++|++++
T Consensus        47 ~~~~~~~~~~~~~vd~~~~~~~~~~~~v-~~~Pt~~~~~~G~~~~~~~G~~~~~l~~~l~~~~  108 (112)
T 3d6i_A           47 SNEPSNSNVSFLSIDADENSEISELFEI-SAVPYFIIIHKGTILKELSGADPKEYVSLLEDCK  108 (112)
T ss_dssp             HHCGGGTTSEEEEEETTTCHHHHHHTTC-CSSSEEEEEETTEEEEEECSCCHHHHHHHHHHHH
T ss_pred             HHhcCCCCEEEEEEecccCHHHHHHcCC-CcccEEEEEECCEEEEEecCCCHHHHHHHHHHHH
Confidence            998  56799999999999999999999 9999999999999999999998778999998875

>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}

Probab=99.90  E-value=1.3e-23  Score=148.38  Aligned_cols=82  Identities=6%  Similarity=0.129  Sum_probs=78.7

Q ss_pred             EEEEecCCC--hhhhhhhHHHHHHHHhcCC-cEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHH
Q 031271           79 VIYYTAAWC--GPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQ  154 (162)
Q Consensus        79 vv~F~a~wC--~~C~~~~~~l~~~~~~~~~-v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~  154 (162)
                      +|+||++||  ++|+++.|.|++++++|++ +.|++||+|++++++.+|+| .++||+++|+||+.+.+..|. +.++|.
T Consensus        37 lVdF~A~wCr~gpCk~iaPvleela~e~~~~v~~~KVdvDe~~~la~~ygV-~siPTlilFkdG~~v~~~vG~~~k~~l~  115 (137)
T 2qsi_A           37 VLFFRGDAVRFPEAADLAVVLPELINAFPGRLVAAEVAAEAERGLMARFGV-AVCPSLAVVQPERTLGVIAKIQDWSSYL  115 (137)
T ss_dssp             EEEECCCTTTCTTHHHHHHHHHHHHHTSTTTEEEEEECGGGHHHHHHHHTC-CSSSEEEEEECCEEEEEEESCCCHHHHH
T ss_pred             EEEEeCCccCCCchhhHHhHHHHHHHHccCCcEEEEEECCCCHHHHHHcCC-ccCCEEEEEECCEEEEEEeCCCCHHHHH
Confidence            999999999  9999999999999999975 99999999999999999999 999999999999999999999 788999


Q ss_pred             HHHHHHh
Q 031271          155 MKTEKRR  161 (162)
Q Consensus       155 ~~l~~~~  161 (162)
                      ++|++++
T Consensus       116 ~~l~~~l  122 (137)
T 2qsi_A          116 AQIGAML  122 (137)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9998765

>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*

Probab=99.90  E-value=1e-22  Score=139.61  Aligned_cols=109  Identities=39%  Similarity=0.750  Sum_probs=99.4

Q ss_pred             CCceeEeechhhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhhhhhhHHHH
Q 031271           19 TPLVMELQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYVK   98 (162)
Q Consensus        19 ~~~v~~i~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~~~l~   98 (162)
                      .+.+..+.+.++|++.+..+...++++                                 +|+||++||++|+.+.|.|+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------vv~f~~~~C~~C~~~~~~l~   57 (122)
T 2vlu_A           11 AAEVISVHSLEQWTMQIEEANTAKKLV---------------------------------VIDFTASWCGPCRIMAPVFA   57 (122)
T ss_dssp             -CCCEEECSHHHHHHHHHHHHHTTCCE---------------------------------EEEEECTTCHHHHHHHHHHH
T ss_pred             CCcceeccCHHHHHHHHHHhhccCCEE---------------------------------EEEEECCCCHHHHHHHHHHH
Confidence            445667778899999998776678888                                 99999999999999999999


Q ss_pred             HHHHhcCCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCCCHHHHHHHHHHHh
Q 031271           99 DFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQMKTEKRR  161 (162)
Q Consensus        99 ~~~~~~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~~~~~l~~~l~~~~  161 (162)
                      +++++++++.|+.||++.+++++++|++ .++||++++++|+.+.++.|...+.|.++|++++
T Consensus        58 ~~~~~~~~~~~~~vd~~~~~~~~~~~~v-~~~Pt~~~~~~G~~~~~~~G~~~~~l~~~l~~~l  119 (122)
T 2vlu_A           58 DLAKKFPNAVFLKVDVDELKPIAEQFSV-EAMPTFLFMKEGDVKDRVVGAIKEELTAKVGLHA  119 (122)
T ss_dssp             HHHHHCTTSEEEEEETTTCHHHHHHTTC-CSSSEEEEEETTEEEEEEESSCHHHHHHHHHHHH
T ss_pred             HHHHHCCCcEEEEEECCCCHHHHHHcCC-CcccEEEEEeCCEEEEEEeCcCHHHHHHHHHHHh
Confidence            9999999999999999999999999999 9999999999999999999988889999999875

>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1

Probab=99.90  E-value=1.8e-22  Score=140.22  Aligned_cols=104  Identities=35%  Similarity=0.600  Sum_probs=96.4

Q ss_pred             CceeEeechhhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhhhhhhHHHHH
Q 031271           20 PLVMELQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYVKD   99 (162)
Q Consensus        20 ~~v~~i~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~~~l~~   99 (162)
                      .++..+++.++|++.+.    .++++                                 +|+||++||++|+.+.|.|++
T Consensus        19 ~mv~~l~~~~~f~~~~~----~~k~v---------------------------------vv~F~a~wC~~C~~~~p~l~~   61 (125)
T 1r26_A           19 PSVVDVYSVEQFRNIMS----EDILT---------------------------------VAWFTAVWCGPCKTIERPMEK   61 (125)
T ss_dssp             SCCEEECCHHHHHHHHH----SSSCE---------------------------------EEEEECTTCHHHHHTHHHHHH
T ss_pred             cceEECCCHHHHHHHHc----cCCEE---------------------------------EEEEECCcCHhHHHHHHHHHH
Confidence            45889998899999882    47788                                 999999999999999999999


Q ss_pred             HHHhcCCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCCCHHHHHHHHHHHh
Q 031271          100 FAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQMKTEKRR  161 (162)
Q Consensus       100 ~~~~~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~~~~~l~~~l~~~~  161 (162)
                      +++.++++.|+.||++.+++++++|++ .++||+++|++|+.+.++.|.+++.|+++|++++
T Consensus        62 l~~~~~~v~~~~vd~d~~~~l~~~~~v-~~~Pt~~i~~~G~~~~~~~G~~~~~l~~~l~~~l  122 (125)
T 1r26_A           62 IAYEFPTVKFAKVDADNNSEIVSKCRV-LQLPTFIIARSGKMLGHVIGANPGMLRQKLRDII  122 (125)
T ss_dssp             HHHHCTTSEEEEEETTTCHHHHHHTTC-CSSSEEEEEETTEEEEEEESSCHHHHHHHHHHHH
T ss_pred             HHHHCCCCEEEEEECCCCHHHHHHcCC-CcccEEEEEeCCeEEEEEeCCCHHHHHHHHHHHh
Confidence            999998999999999999999999999 9999999999999999999998999999998875

>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A

Probab=99.90  E-value=1.6e-22  Score=144.71  Aligned_cols=109  Identities=26%  Similarity=0.515  Sum_probs=98.5

Q ss_pred             cCCCceeEeechhhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhhhhhhHH
Q 031271           17 AKTPLVMELQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPY   96 (162)
Q Consensus        17 ~~~~~v~~i~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~~~   96 (162)
                      ...+.+..+++.++|++.++..  .++++                                 +|+||++||++|+.+.|.
T Consensus         9 ~~~~~v~~l~~~~~~~~~~~~~--~~~~v---------------------------------vv~F~a~wC~~C~~~~p~   53 (153)
T 2wz9_A            9 AAVAAVEEVGSAGQFEELLRLK--AKSLL---------------------------------VVHFWAPWAPQCAQMNEV   53 (153)
T ss_dssp             ---CCSEEECSHHHHHHHHHHT--TTSCE---------------------------------EEEEECTTCHHHHHHHHH
T ss_pred             cccCCeEEcCCHHHHHHHHHhc--CCCeE---------------------------------EEEEECCCCHhHHHHHHH
Confidence            3467789999999999998753  36777                                 999999999999999999


Q ss_pred             HHHHHHhcCCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCCCHHHHHHHHHHHh
Q 031271           97 VKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQMKTEKRR  161 (162)
Q Consensus        97 l~~~~~~~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~~~~~l~~~l~~~~  161 (162)
                      |+++++.++++.|+.||++.+++++++|+| .++||+++|++|+.+.++.|.+.+.|.++|++++
T Consensus        54 l~~l~~~~~~v~~~~vd~~~~~~l~~~~~v-~~~Pt~~~~~~G~~~~~~~G~~~~~l~~~i~~~l  117 (153)
T 2wz9_A           54 MAELAKELPQVSFVKLEAEGVPEVSEKYEI-SSVPTFLFFKNSQKIDRLDGAHAPELTKKVQRHA  117 (153)
T ss_dssp             HHHHHHHCTTSEEEEEETTTSHHHHHHTTC-CSSSEEEEEETTEEEEEEESSCHHHHHHHHHHHS
T ss_pred             HHHHHHHcCCeEEEEEECCCCHHHHHHcCC-CCCCEEEEEECCEEEEEEeCCCHHHHHHHHHHHh
Confidence            999999998999999999999999999999 9999999999999999999998889999999875

>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}

Probab=99.89  E-value=3.1e-22  Score=133.01  Aligned_cols=104  Identities=35%  Similarity=0.669  Sum_probs=95.0

Q ss_pred             eeEeechhhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhhhhhhHHHHHHH
Q 031271           22 VMELQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYVKDFA  101 (162)
Q Consensus        22 v~~i~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~~~l~~~~  101 (162)
                      |..+++.++|++.++.  ..++++                                 +|+||++||++|+.+.|.+++++
T Consensus         1 v~~i~~~~~~~~~l~~--~~~~~~---------------------------------~v~f~~~~C~~C~~~~~~l~~~~   45 (104)
T 2vim_A            1 MRVLATAADLEKLINE--NKGRLI---------------------------------VVDFFAQWCGPCRNIAPKVEALA   45 (104)
T ss_dssp             CEECCSHHHHHHHHHT--TTTSCE---------------------------------EEEEECTTCHHHHHHHHHHHHHH
T ss_pred             CeecCCHHHHHHHHHh--cCCCeE---------------------------------EEEEECCCCHHHHHhhHHHHHHH
Confidence            4577888999998864  246777                                 99999999999999999999999


Q ss_pred             HhcCCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCCCHHHHHHHHHHHh
Q 031271          102 AMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQMKTEKRR  161 (162)
Q Consensus       102 ~~~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~~~~~l~~~l~~~~  161 (162)
                      +.++++.|+.+|++.+++++++|++ .++||++++++|+.+.++.|.+.+.|.++|++++
T Consensus        46 ~~~~~~~~~~v~~~~~~~~~~~~~v-~~~Pt~~~~~~g~~~~~~~G~~~~~l~~~l~~~l  104 (104)
T 2vim_A           46 KEIPEVEFAKVDVDQNEEAAAKYSV-TAMPTFVFIKDGKEVDRFSGANETKLRETITRHK  104 (104)
T ss_dssp             HHCTTSEEEEEETTTCHHHHHHTTC-CSSSEEEEEETTEEEEEEESSCHHHHHHHHHHHC
T ss_pred             HHCCCCEEEEEeccCCHHHHHHcCC-ccccEEEEEeCCcEEEEEeCCCHHHHHHHHHhhC
Confidence            9999999999999999999999999 9999999999999999999999999999998864

>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A

Probab=99.89  E-value=2.6e-22  Score=135.62  Aligned_cols=108  Identities=31%  Similarity=0.502  Sum_probs=96.1

Q ss_pred             CCCceeEeechhhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhhhhhhHHH
Q 031271           18 KTPLVMELQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYV   97 (162)
Q Consensus        18 ~~~~v~~i~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~~~l   97 (162)
                      ..+.|..+++ ++|++.+..+  .++++                                 +|+||++||++|+.+.|.|
T Consensus         3 ~~~~v~~l~~-~~~~~~~~~~--~~~~v---------------------------------lv~f~a~wC~~C~~~~~~l   46 (111)
T 2pu9_C            3 IVGKVTEVNK-DTFWPIVKAA--GDKPV---------------------------------VLDMFTQWCGPSKAMAPKY   46 (111)
T ss_dssp             CTTSEEEECT-TTHHHHHTTC--TTSCE---------------------------------EEEEECTTCHHHHHHHHHH
T ss_pred             CcCccEEech-HHHHHHHHhc--CCCEE---------------------------------EEEEECCcCHhHHHHCHHH
Confidence            3567788865 7888887542  36777                                 9999999999999999999


Q ss_pred             HHHHHhcCCcEEEEEECC-CcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCCCHHHHHHHHHHHhC
Q 031271           98 KDFAAMYTDVQFIKIDVD-WLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQMKTEKRRN  162 (162)
Q Consensus        98 ~~~~~~~~~v~f~~vd~d-~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~~~~~l~~~l~~~~~  162 (162)
                      +++++.++++.|+.+|++ .+++++++|++ .++||++++++|+.+.++.|.+.+.|.++|+++++
T Consensus        47 ~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v-~~~Pt~~~~~~G~~~~~~~G~~~~~l~~~l~~~~~  111 (111)
T 2pu9_C           47 EKLAEEYLDVIFLKLDCNQENKTLAKELGI-RVVPTFKILKENSVVGEVTGAKYDKLLEAIQAARS  111 (111)
T ss_dssp             HHHHHHCTTSEEEEEECSSTTHHHHHHHCC-SBSSEEEEESSSSEEEEEESSCHHHHHHHHHHHHC
T ss_pred             HHHHHHCCCeEEEEEecCcchHHHHHHcCC-CeeeEEEEEeCCcEEEEEcCCCHHHHHHHHHHhhC
Confidence            999999999999999998 78999999999 99999999999999999999999999999998763

>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A

Probab=99.89  E-value=1.7e-22  Score=138.06  Aligned_cols=105  Identities=32%  Similarity=0.650  Sum_probs=95.9

Q ss_pred             CCCceeEeechhhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhhhhhhHHH
Q 031271           18 KTPLVMELQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYV   97 (162)
Q Consensus        18 ~~~~v~~i~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~~~l   97 (162)
                      ..+.+..+++.+++++.++    .++++                                 +|+||++||++|+.+.|.|
T Consensus        10 ~~~~~~~~~~~~~~~~~~~----~~k~v---------------------------------vv~F~a~wC~~C~~~~p~l   52 (114)
T 2oe3_A           10 SYTSITKLTNLTEFRNLIK----QNDKL---------------------------------VIDFYATWCGPCKMMQPHL   52 (114)
T ss_dssp             CGGGSCBCCSHHHHHHHHH----HCSEE---------------------------------EEEEECTTCHHHHHTHHHH
T ss_pred             chhheeecCCHHHHHHHHh----CCCEE---------------------------------EEEEECCCCHHHHHHHHHH
Confidence            5677888899888988875    36778                                 9999999999999999999


Q ss_pred             HHHHHhcCCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCCCHHHHHHHHHHH
Q 031271           98 KDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQMKTEKR  160 (162)
Q Consensus        98 ~~~~~~~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~~~~~l~~~l~~~  160 (162)
                      ++++++++++.|+.+|++.+++++++|++ .++||++++++|+.+.++.|..++.|+++|+++
T Consensus        53 ~~~~~~~~~v~~~~vd~~~~~~l~~~~~v-~~~Pt~~~~~~G~~~~~~~G~~~~~l~~~l~~~  114 (114)
T 2oe3_A           53 TKLIQAYPDVRFVKCDVDESPDIAKECEV-TAMPTFVLGKDGQLIGKIIGANPTALEKGIKDL  114 (114)
T ss_dssp             HHHHHHCTTSEEEEEETTTCHHHHHHTTC-CSBSEEEEEETTEEEEEEESSCHHHHHHHHHTC
T ss_pred             HHHHHHCCCCEEEEEECCCCHHHHHHCCC-CcccEEEEEeCCeEEEEEeCCCHHHHHHHHHhC
Confidence            99999998999999999999999999999 999999999999999999998888899988763

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A

Probab=99.89  E-value=2.9e-22  Score=136.68  Aligned_cols=106  Identities=35%  Similarity=0.691  Sum_probs=96.9

Q ss_pred             CCceeEeechhhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhhhhhhHHHH
Q 031271           19 TPLVMELQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYVK   98 (162)
Q Consensus        19 ~~~v~~i~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~~~l~   98 (162)
                      .+.+..+++.++|++.++..  .++++                                 +|+||++||++|+.+.|.++
T Consensus        12 m~~v~~l~~~~~~~~~l~~~--~~~~~---------------------------------vv~f~a~wC~~C~~~~~~~~   56 (117)
T 2xc2_A           12 MSELIELKQDGDLESLLEQH--KNKLV---------------------------------VVDFFATWCGPCKTIAPLFK   56 (117)
T ss_dssp             CCEEEECCSTTHHHHHHHHT--TTSCE---------------------------------EEEEECTTCHHHHHHHHHHH
T ss_pred             hheeEEeCCHHHHHHHHHhC--CCCEE---------------------------------EEEEECCCCHhHHHHhHHHH
Confidence            44588998889999998753  46778                                 99999999999999999999


Q ss_pred             HHHHhcCCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCCCHHHHHHHHHHHh
Q 031271           99 DFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQMKTEKRR  161 (162)
Q Consensus        99 ~~~~~~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~~~~~l~~~l~~~~  161 (162)
                      ++++++ ++.|+.+|++.+++++++|++ .++||++++++|+.+.++.|.+.+.|+++|++++
T Consensus        57 ~~~~~~-~~~~~~vd~~~~~~~~~~~~v-~~~Pt~~~~~~G~~~~~~~G~~~~~l~~~l~~~l  117 (117)
T 2xc2_A           57 ELSEKY-DAIFVKVDVDKLEETARKYNI-SAMPTFIAIKNGEKVGDVVGASIAKVEDMIKKFI  117 (117)
T ss_dssp             HHHTTS-SSEEEEEETTTSHHHHHHTTC-CSSSEEEEEETTEEEEEEESSCHHHHHHHHHHHC
T ss_pred             HHHHHc-CcEEEEEECCccHHHHHHcCC-CccceEEEEeCCcEEEEEeCCCHHHHHHHHHHhC
Confidence            999998 999999999999999999999 9999999999999999999999999999998864

>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A

Probab=99.89  E-value=4.5e-22  Score=132.66  Aligned_cols=104  Identities=30%  Similarity=0.634  Sum_probs=94.9

Q ss_pred             eeEeechhhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhhhhhhHHHHHHH
Q 031271           22 VMELQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYVKDFA  101 (162)
Q Consensus        22 v~~i~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~~~l~~~~  101 (162)
                      |..+++.++|++.+...  .++++                                 +|+||++||++|+.+.|.+++++
T Consensus         2 v~~l~~~~~~~~~l~~~--~~~~~---------------------------------vv~f~~~~C~~C~~~~~~l~~~~   46 (106)
T 1xwb_A            2 VYQVKDKADLDGQLTKA--SGKLV---------------------------------VLDFFATWCGPCKMISPKLVELS   46 (106)
T ss_dssp             EEECCSHHHHHHHHHHH--TTSEE---------------------------------EEEEECTTCHHHHHHHHHHHHHH
T ss_pred             ceecCCHHHHHHHHHhc--CCCEE---------------------------------EEEEECCcCHHHHHhhHHHHHHH
Confidence            67888889999998752  46777                                 99999999999999999999999


Q ss_pred             Hhc-CCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCCCHHHHHHHHHHHh
Q 031271          102 AMY-TDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQMKTEKRR  161 (162)
Q Consensus       102 ~~~-~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~~~~~l~~~l~~~~  161 (162)
                      +.+ +++.|+.+|++.+++++++|++ .++||++++++|+.+.++.|.+++.|.++|++++
T Consensus        47 ~~~~~~~~~~~v~~~~~~~~~~~~~v-~~~Pt~~~~~~G~~~~~~~g~~~~~l~~~i~~~l  106 (106)
T 1xwb_A           47 TQFADNVVVLKVDVDECEDIAMEYNI-SSMPTFVFLKNGVKVEEFAGANAKRLEDVIKANI  106 (106)
T ss_dssp             HHTTTTEEEEEEETTTCHHHHHHTTC-CSSSEEEEEETTEEEEEEESCCHHHHHHHHHHTC
T ss_pred             HHhCCCeEEEEEeccchHHHHHHcCC-CcccEEEEEcCCcEEEEEcCCCHHHHHHHHHHhC
Confidence            999 5699999999999999999999 9999999999999999999998999999998763

>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A

Probab=99.89  E-value=4.2e-23  Score=146.29  Aligned_cols=82  Identities=12%  Similarity=0.050  Sum_probs=78.4

Q ss_pred             EEEEecCC--ChhhhhhhHHHHHHHHhcCC--cEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHH
Q 031271           79 VIYYTAAW--CGPCKFIEPYVKDFAAMYTD--VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDEL  153 (162)
Q Consensus        79 vv~F~a~w--C~~C~~~~~~l~~~~~~~~~--v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l  153 (162)
                      +|+||++|  |++|+++.|.|++++++|++  +.|++||+|++++++.+||| .++||+++|+||+.+.+..|. +.++|
T Consensus        38 lVdF~a~~crCgpCk~iaPvleela~e~~g~~v~~~KVdvDe~~~lA~~ygV-~sIPTlilFk~G~~v~~~~G~~~k~~l  116 (140)
T 2qgv_A           38 VVLLSSDPKRTPEVSDNPVMIGELLHEFPDYTWQVAIADLEQSEAIGDRFGA-FRFPATLVFTGGNYRGVLNGIHPWAEL  116 (140)
T ss_dssp             EEEECCCTTTCTTTTHHHHHHHHHHTTCTTSCCEEEECCHHHHHHHHHHHTC-CSSSEEEEEETTEEEEEEESCCCHHHH
T ss_pred             EEEEeCCcccCCcHHHHHhHHHHHHHHcCCCeEEEEEEECCCCHHHHHHcCC-ccCCEEEEEECCEEEEEEecCCCHHHH
Confidence            89999999  99999999999999999974  89999999999999999999 999999999999999999999 78899


Q ss_pred             HHHHHHHh
Q 031271          154 QMKTEKRR  161 (162)
Q Consensus       154 ~~~l~~~~  161 (162)
                      +++|++++
T Consensus       117 ~~~i~~~l  124 (140)
T 2qgv_A          117 INLMRGLV  124 (140)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99999875

>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}

Probab=99.89  E-value=1.2e-22  Score=140.50  Aligned_cols=103  Identities=20%  Similarity=0.306  Sum_probs=88.6

Q ss_pred             CCceeEeechhhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhhhhhhHHHH
Q 031271           19 TPLVMELQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYVK   98 (162)
Q Consensus        19 ~~~v~~i~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~~~l~   98 (162)
                      .+.+.++ +.++|.+.+..+ ..++++                                 +|+||++||++|+.+.|.|+
T Consensus         2 ~G~v~~i-t~~~f~~~v~~~-~~~~~v---------------------------------vv~F~a~wc~~C~~~~p~l~   46 (118)
T 3evi_A            2 FGELREI-SGNQYVNEVTNA-EEDVWV---------------------------------IIHLYRSSIPMCLLVNQHLS   46 (118)
T ss_dssp             CCSCEEC-CGGGHHHHTTTC-CTTCEE---------------------------------EEEEECTTSHHHHHHHHHHH
T ss_pred             CcceEEe-CHHHHHHHHHhc-CCCCeE---------------------------------EEEEeCCCChHHHHHHHHHH
Confidence            5678888 458888877542 223477                                 99999999999999999999


Q ss_pred             HHHHhcCCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC--------CHHHHHHHHHHH
Q 031271           99 DFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA--------KKDELQMKTEKR  160 (162)
Q Consensus        99 ~~~~~~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~--------~~~~l~~~l~~~  160 (162)
                      +++++|+++.|++||+|+.   +.+|+| ..+||+++|++|+.+.++.|.        +.+.|+.+|.++
T Consensus        47 ~la~~~~~v~f~kvd~d~~---~~~~~v-~~~PT~~~fk~G~~v~~~~G~~~~gg~~~~~~~le~~L~~~  112 (118)
T 3evi_A           47 LLARKFPETKFVKAIVNSC---IQHYHD-NCLPTIFVYKNGQIEAKFIGIIECGGINLKLEELEWKLAEV  112 (118)
T ss_dssp             HHHHHCTTSEEEEEEGGGT---STTCCG-GGCSEEEEEETTEEEEEEESTTTTTCSSCCHHHHHHHHHTT
T ss_pred             HHHHHCCCCEEEEEEhHHh---HHHCCC-CCCCEEEEEECCEEEEEEeChhhhCCCCCCHHHHHHHHHHc
Confidence            9999999999999999986   589999 999999999999999999986        478898888764

>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1

Probab=99.89  E-value=7e-22  Score=133.92  Aligned_cols=106  Identities=32%  Similarity=0.631  Sum_probs=94.3

Q ss_pred             CCceeEeechhhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhhhhhhHHHH
Q 031271           19 TPLVMELQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYVK   98 (162)
Q Consensus        19 ~~~v~~i~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~~~l~   98 (162)
                      .+......+.++|++.++    .++++                                 +|+||++||++|+.+.|.++
T Consensus         7 ~~~~~~~~~~~~f~~~~~----~~k~v---------------------------------lv~f~a~~C~~C~~~~~~l~   49 (112)
T 1syr_A            7 HHMVKIVTSQAEFDSIIS----QNELV---------------------------------IVDFFAEWCGPCKRIAPFYE   49 (112)
T ss_dssp             --CCEEECSHHHHHHHHH----HCSEE---------------------------------EEEEECTTCHHHHHHHHHHH
T ss_pred             ceeEEEECCHHHHHHHHc----cCCeE---------------------------------EEEEECCCCHHHHHHHHHHH
Confidence            344455667799999885    36778                                 99999999999999999999


Q ss_pred             HHHHhcCCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCCCHHHHHHHHHHHhC
Q 031271           99 DFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQMKTEKRRN  162 (162)
Q Consensus        99 ~~~~~~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~~~~~l~~~l~~~~~  162 (162)
                      ++.++++++.|+.||++.+++++++|++ .++||++++++|+.+.++.|.+.+.|.++|+++++
T Consensus        50 ~l~~~~~~v~~~~vd~~~~~~~~~~~~v-~~~Pt~~~~~~G~~~~~~~G~~~~~l~~~l~~~l~  112 (112)
T 1syr_A           50 ECSKTYTKMVFIKVDVDEVSEVTEKENI-TSMPTFKVYKNGSSVDTLLGANDSALKQLIEKYAA  112 (112)
T ss_dssp             HHHHHCTTSEEEEEETTTTHHHHHHTTC-CSSSEEEEEETTEEEEEEESCCHHHHHHHHHTTC-
T ss_pred             HHHHHcCCCEEEEEECCCCHHHHHHcCC-CcccEEEEEECCcEEEEEeCCCHHHHHHHHHHhhC
Confidence            9999999999999999999999999999 99999999999999999999999999999998753

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}

Probab=99.89  E-value=4e-22  Score=137.23  Aligned_cols=113  Identities=34%  Similarity=0.573  Sum_probs=102.3

Q ss_pred             CCCcccCCCceeEeechhhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhhh
Q 031271           12 HGFIHAKTPLVMELQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCK   91 (162)
Q Consensus        12 ~~~~~~~~~~v~~i~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~   91 (162)
                      |-......+.+..+++.++|++.+    ..++++                                 +|+||++||++|+
T Consensus         7 ~~~~~~~~~~~~~i~~~~~f~~~l----~~~k~v---------------------------------vv~f~a~~C~~C~   49 (121)
T 2j23_A            7 HHHHLVPRGSVQVISSYDQFKQVT----GGDKVV---------------------------------VIDFWATWCGPCK   49 (121)
T ss_dssp             CCCCCCCCCCEEECCSHHHHHHHH----SSSSCE---------------------------------EEEEECTTCSTHH
T ss_pred             ccccccCCcceEEcCCHHHHHHHH----cCCCEE---------------------------------EEEEECCCCHhHH
Confidence            344556788899999999999988    346778                                 9999999999999


Q ss_pred             hhhHHHHHHHHhcCC--cEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCCCHHHHHHHHHHHhC
Q 031271           92 FIEPYVKDFAAMYTD--VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQMKTEKRRN  162 (162)
Q Consensus        92 ~~~~~l~~~~~~~~~--v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~~~~~l~~~l~~~~~  162 (162)
                      .+.|.|+++++.+++  +.|+.+|++.+++++++|++ .++||+++|++|+.+.++.|.+.+.|.++|+++++
T Consensus        50 ~~~~~l~~l~~~~~~~~v~~~~vd~d~~~~~~~~~~v-~~~Pt~~~~~~G~~~~~~~G~~~~~l~~~l~~~l~  121 (121)
T 2j23_A           50 MIGPVFEKISDTPAGDKVGFYKVDVDEQSQIAQEVGI-RAMPTFVFFKNGQKIDTVVGADPSKLQAAITQHSA  121 (121)
T ss_dssp             HHHHHHHHHHTSTHHHHSEEEEEETTTCHHHHHHHTC-CSSSEEEEEETTEEEEEEESSCHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHCcCCcEEEEEEECcCCHHHHHHcCC-CcccEEEEEECCeEEeeEcCCCHHHHHHHHHHhhC
Confidence            999999999999876  99999999999999999999 99999999999999999999999999999998763

>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0

Probab=99.88  E-value=8.4e-22  Score=132.50  Aligned_cols=82  Identities=18%  Similarity=0.406  Sum_probs=79.1

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCC-cEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHHH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQMK  156 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~-v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~~  156 (162)
                      +|+||++||++|+.+.|.++++++.+++ +.|+.+|++.+++++++|++ .++||+++|++|+.+.++.|. +.+.|.++
T Consensus        26 lv~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v-~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~  104 (111)
T 3gnj_A           26 LVMFSRKNCHVCQKVTPVLEELRLNYEESFGFYYVDVEEEKTLFQRFSL-KGVPQILYFKDGEYKGKMAGDVEDDEVEQM  104 (111)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTCHHHHHHTTC-CSSCEEEEEETTEEEEEEESSCCHHHHHHH
T ss_pred             EEEEeCCCChhHHHHHHHHHHHHHHcCCceEEEEEECCcChhHHHhcCC-CcCCEEEEEECCEEEEEEeccCCHHHHHHH
Confidence            9999999999999999999999999986 99999999999999999999 999999999999999999998 89999999


Q ss_pred             HHHHh
Q 031271          157 TEKRR  161 (162)
Q Consensus       157 l~~~~  161 (162)
                      |++++
T Consensus       105 l~~~l  109 (111)
T 3gnj_A          105 IADVL  109 (111)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            99875

>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A

Probab=99.88  E-value=8.6e-22  Score=135.07  Aligned_cols=114  Identities=26%  Similarity=0.499  Sum_probs=94.1

Q ss_pred             CCCCcccCCCceeEeechhhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhh
Q 031271           11 PHGFIHAKTPLVMELQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPC   90 (162)
Q Consensus        11 ~~~~~~~~~~~v~~i~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C   90 (162)
                      +|.+.+...+.+.. .+.++|++.+..   .++++                                 +|+||++||++|
T Consensus         4 ~~~~~~~~~~~~~~-~~~~~f~~~v~~---~~k~v---------------------------------lv~f~a~~C~~C   46 (119)
T 1w4v_A            4 SHHHHHHGSTTFNI-QDGPDFQDRVVN---SETPV---------------------------------VVDFHAQWCGPC   46 (119)
T ss_dssp             ------CCCSEEEC-CSHHHHHHHTTT---CSSCE---------------------------------EEEEECTTCHHH
T ss_pred             ccccccCCceEEEe-cChhhHHHHHHc---CCCcE---------------------------------EEEEECCCCHHH
Confidence            34444444455544 566888887643   46777                                 999999999999


Q ss_pred             hhhhHHHHHHHHhcC-CcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHHHHHHHhC
Q 031271           91 KFIEPYVKDFAAMYT-DVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQMKTEKRRN  162 (162)
Q Consensus        91 ~~~~~~l~~~~~~~~-~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~~l~~~~~  162 (162)
                      +.+.|.|+++++++. ++.|+.+|++.+++++++|++ .++||+++|++|+.+.++.|. +.+.|.++|++++.
T Consensus        47 ~~~~~~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v-~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l~  119 (119)
T 1w4v_A           47 KILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEV-SAVPTVLAMKNGDVVDKFVGIKDEDQLEAFLKKLIG  119 (119)
T ss_dssp             HHHHHHHHHHHHHTTTSSEEEEEETTTTHHHHHHTTC-CSSSEEEEEETTEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhcCCeEEEEEeCCCCHHHHHHcCC-CcccEEEEEeCCcEEEEEcCCCCHHHHHHHHHHHhC
Confidence            999999999999986 499999999999999999999 999999999999999999998 89999999998763

>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A

Probab=99.88  E-value=3.4e-22  Score=143.00  Aligned_cols=106  Identities=17%  Similarity=0.262  Sum_probs=95.2

Q ss_pred             CceeEeechhhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhhhhhhHHHHH
Q 031271           20 PLVMELQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYVKD   99 (162)
Q Consensus        20 ~~v~~i~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~~~l~~   99 (162)
                      ..+..+.+.++|++.+..  +.++++                                 +|+|||+||++|+.+.|.|++
T Consensus         3 ~~l~~i~~~~~~~~~i~~--~~~k~v---------------------------------lv~F~a~WC~~C~~~~p~l~~   47 (149)
T 3gix_A            3 FLLPKLTSKKEVDQAIKS--TAEKVL---------------------------------VLRFGRDEDPVCLQLDDILSK   47 (149)
T ss_dssp             CSCCEECSHHHHHHHHHH--CCSSEE---------------------------------EEEEECTTSHHHHHHHHHHHH
T ss_pred             cceeecCCHHHHHHHHHh--cCCCEE---------------------------------EEEEECCCCHHHHHHHHHHHH
Confidence            356678888899988853  347778                                 999999999999999999999


Q ss_pred             HHHhcCC-cEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEE---------EEEcC-C-CHHHHHHHHHHHh
Q 031271          100 FAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEI---------DRVVG-A-KKDELQMKTEKRR  161 (162)
Q Consensus       100 ~~~~~~~-v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i---------~~~~g-~-~~~~l~~~l~~~~  161 (162)
                      ++++|++ +.|+.||+|++++++++|+| .++||++++++|+.+         .++.| . +.++|+++|++++
T Consensus        48 l~~~~~~~~~~~~vd~d~~~~l~~~~~v-~~~Pt~~~~~~G~~v~~~~g~~~~~~~~G~~~~~~~l~~~l~~~~  120 (149)
T 3gix_A           48 TSSDLSKMAAIYLVDVDQTAVYTQYFDI-SYIPSTVFFFNGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVIY  120 (149)
T ss_dssp             HHTTTTTTEEEEEEETTTCCHHHHHTTC-CSSSEEEEEETTEEEEEECSSSCCSCEESCCSSHHHHHHHHHHHH
T ss_pred             HHHHccCceEEEEEECCcCHHHHHHcCC-CccCeEEEEECCeEEEeecCCCCCCeEeeecCCHHHHHHHHHHHH
Confidence            9999988 99999999999999999999 999999999999999         89999 6 8899999998764

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=99.88  E-value=1.3e-21  Score=130.86  Aligned_cols=83  Identities=29%  Similarity=0.547  Sum_probs=79.1

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCC-cEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHHH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQMK  156 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~-v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~~  156 (162)
                      +|+||++||++|+.+.|.++++++.+++ +.|+.+|++.+++++++|++ .++||+++|++|+.+.++.|. +.+.|.++
T Consensus        25 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i-~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~  103 (109)
T 3tco_A           25 LVDCWAEWCAPCHLYEPIYKKVAEKYKGKAVFGRLNVDENQKIADKYSV-LNIPTTLIFVNGQLVDSLVGAVDEDTLEST  103 (109)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTCHHHHHHTTC-CSSSEEEEEETTEEEEEEESCCCHHHHHHH
T ss_pred             EEEEECCCCHHHHhhhHHHHHHHHHhCCCceEEEEccccCHHHHHhcCc-ccCCEEEEEcCCcEEEeeeccCCHHHHHHH
Confidence            9999999999999999999999999985 99999999999999999999 999999999999999999998 89999999


Q ss_pred             HHHHhC
Q 031271          157 TEKRRN  162 (162)
Q Consensus       157 l~~~~~  162 (162)
                      |+++++
T Consensus       104 l~~~l~  109 (109)
T 3tco_A          104 VNKYLK  109 (109)
T ss_dssp             HHHHC-
T ss_pred             HHHHhC
Confidence            998763

>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1

Probab=99.88  E-value=1.7e-21  Score=134.04  Aligned_cols=108  Identities=31%  Similarity=0.537  Sum_probs=95.8

Q ss_pred             CCCceeEeechhhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhhhhhhHHH
Q 031271           18 KTPLVMELQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYV   97 (162)
Q Consensus        18 ~~~~v~~i~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~~~l   97 (162)
                      ..+.+..+++ ++|++.+...  .++++                                 +|+||++||++|+.+.|.+
T Consensus        16 ~~~~v~~l~~-~~~~~~~~~~--~~~~~---------------------------------vv~f~a~wC~~C~~~~~~l   59 (124)
T 1faa_A           16 IVGKVTEVNK-DTFWPIVKAA--GDKPV---------------------------------VLDMFTQWCGPCKAMAPKY   59 (124)
T ss_dssp             TTTSEEEECT-TTHHHHHHHT--TTSCE---------------------------------EEEEECTTCHHHHHHHHHH
T ss_pred             cCCceEEecc-hhHHHHHHhc--CCCEE---------------------------------EEEEECCcCHhHHHHhHHH
Confidence            3566777755 7788887642  46777                                 9999999999999999999


Q ss_pred             HHHHHhcCCcEEEEEECC-CcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCCCHHHHHHHHHHHhC
Q 031271           98 KDFAAMYTDVQFIKIDVD-WLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQMKTEKRRN  162 (162)
Q Consensus        98 ~~~~~~~~~v~f~~vd~d-~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~~~~~l~~~l~~~~~  162 (162)
                      ++++++++++.|+.+|++ .+++++++|++ .++||++++++|+.+.++.|...++|.++|+++++
T Consensus        60 ~~~~~~~~~~~~~~vd~~~~~~~~~~~~~v-~~~Pt~~~~~~G~~~~~~~G~~~~~l~~~i~~~~~  124 (124)
T 1faa_A           60 EKLAEEYLDVIFLKLDCNQENKTLAKELGI-RVVPTFKILKENSVVGEVTGAKYDKLLEAIQAARS  124 (124)
T ss_dssp             HHHHHHCTTSEEEEEECSSTTHHHHHHHCC-SSSSEEEEEETTEEEEEEESSCHHHHHHHHHHHTC
T ss_pred             HHHHHHCCCCEEEEEecCcchHHHHHHcCC-CeeeEEEEEeCCcEEEEEcCCCHHHHHHHHHHhhC
Confidence            999999999999999998 78999999999 99999999999999999999999999999998764

>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A

Probab=99.88  E-value=1.3e-21  Score=130.34  Aligned_cols=82  Identities=34%  Similarity=0.675  Sum_probs=78.6

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCC-cEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHHH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQMK  156 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~-v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~~  156 (162)
                      +|+||++||++|+.+.|.++++++.+++ +.|+.+|++.+++++++|++ .++||++++++|+.+.++.|. +.+.|.++
T Consensus        23 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v-~~~Pt~~~~~~G~~~~~~~g~~~~~~l~~~  101 (106)
T 3die_A           23 LVDFWATACGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEV-MSIPTLIVFKDGQPVDKVVGFQPKENLAEV  101 (106)
T ss_dssp             EEEEECSBCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTC-CSBSEEEEEETTEEEEEEESCCCHHHHHHH
T ss_pred             EEEEECCCCHHHHHHhHHHHHHHHHhcCCcEEEEEECCcCHHHHHhCCC-cccCEEEEEeCCeEEEEEeCCCCHHHHHHH
Confidence            9999999999999999999999999987 99999999999999999999 999999999999999999998 89999999


Q ss_pred             HHHHh
Q 031271          157 TEKRR  161 (162)
Q Consensus       157 l~~~~  161 (162)
                      |++++
T Consensus       102 l~~~l  106 (106)
T 3die_A          102 LDKHL  106 (106)
T ss_dssp             HHTTC
T ss_pred             HHHhC
Confidence            98763

>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}

Probab=99.88  E-value=1.8e-21  Score=133.63  Aligned_cols=105  Identities=29%  Similarity=0.556  Sum_probs=93.8

Q ss_pred             CceeEee-chhhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhhhhhhHHHH
Q 031271           20 PLVMELQ-SKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYVK   98 (162)
Q Consensus        20 ~~v~~i~-s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~~~l~   98 (162)
                      +.+..++ +.++|++.+..   .++++                                 +|+||++||++|+.+.|.|+
T Consensus         3 ~~v~~~~g~~~~~~~~~~~---~~~~v---------------------------------lv~f~a~wC~~C~~~~~~l~   46 (118)
T 2f51_A            3 DPIVHFNGTHEALLNRIKE---APGLV---------------------------------LVDFFATWCGPCQRLGQILP   46 (118)
T ss_dssp             CCSEEECSCHHHHHHHHHH---CSSCE---------------------------------EEEEECTTCHHHHHHHHHHH
T ss_pred             CcceEecCCHHHHHHHHHh---CCCEE---------------------------------EEEEECCCCHHHHHHHHHHH
Confidence            3567776 77888866643   36778                                 99999999999999999999


Q ss_pred             HHHHhcCCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcC----CeEEEEEcCCCHHHHHHHHHHHh
Q 031271           99 DFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKR----GKEIDRVVGAKKDELQMKTEKRR  161 (162)
Q Consensus        99 ~~~~~~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~----Gk~i~~~~g~~~~~l~~~l~~~~  161 (162)
                      ++++.++++.|+.||++.+++++++|++ .++||+++|++    |+.+.++.|...++|++.++++.
T Consensus        47 ~l~~~~~~v~~~~vd~~~~~~~~~~~~i-~~~Pt~~~~~~~~~~G~~~~~~~G~~~~~l~~~~~~~~  112 (118)
T 2f51_A           47 SIAEANKDVTFIKVDVDKNGNAADAYGV-SSIPALFFVKKEGNEIKTLDQFVGADVSRIKADIEKFK  112 (118)
T ss_dssp             HHHHHCTTSEEEEEETTTCHHHHHHTTC-CSSSEEEEEEEETTEEEEEEEEESCCHHHHHHHHHHHC
T ss_pred             HHHHHCCCeEEEEEECCCCHHHHHhcCC-CCCCEEEEEeCCCCcceEEEeecCCCHHHHHHHHHHhh
Confidence            9999997899999999999999999999 99999999988    99999999998888999999874

>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...

Probab=99.87  E-value=2.3e-21  Score=129.87  Aligned_cols=83  Identities=30%  Similarity=0.625  Sum_probs=78.9

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCC-cEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHHH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQMK  156 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~-v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~~  156 (162)
                      +|+||++||++|+.+.|.++++++.+++ +.|+.+|++.+++++++|++ .++||+++|++|+.+.++.|. +.+.|.++
T Consensus        24 ~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v-~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~  102 (108)
T 2trx_A           24 LVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGI-RGIPTLLLFKNGEVAATKVGALSKGQLKEF  102 (108)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCTTHHHHTTC-CSSSEEEEEETTEEEEEEESCCCHHHHHHH
T ss_pred             EEEEECCCCHhHHHHHHHHHHHHHHhCCCcEEEEEECCCCHHHHHHcCC-cccCEEEEEeCCEEEEEEecCCCHHHHHHH
Confidence            9999999999999999999999999974 99999999999999999999 999999999999999999998 89999999


Q ss_pred             HHHHhC
Q 031271          157 TEKRRN  162 (162)
Q Consensus       157 l~~~~~  162 (162)
                      |+++++
T Consensus       103 l~~~l~  108 (108)
T 2trx_A          103 LDANLA  108 (108)
T ss_dssp             HHHHHC
T ss_pred             HHHhhC
Confidence            998763

>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}

Probab=99.87  E-value=4.6e-21  Score=129.35  Aligned_cols=83  Identities=30%  Similarity=0.608  Sum_probs=78.6

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCC-cEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHHH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQMK  156 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~-v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~~  156 (162)
                      +|+||++||++|+.+.|.++++++.+++ +.|+.+|++.+++++++|++ .++||++++++|+.+.++.|. +.+.|.++
T Consensus        27 vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v-~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~  105 (112)
T 1t00_A           27 LVDFWAAWCGPCRQIAPSLEAIAAEYGDKIEIVKLNIDENPGTAAKYGV-MSIPTLNVYQGGEVAKTIVGAKPKAAIVRD  105 (112)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTC-CSSSEEEEEETTEEEEEEESCCCHHHHHHH
T ss_pred             EEEEECCCCHhHHhcCHHHHHHHHHhcCCeEEEEEEcCCCHHHHHhCCC-CcccEEEEEeCCEEEEEEeCCCCHHHHHHH
Confidence            9999999999999999999999999964 99999999999999999999 999999999999999999998 79999999


Q ss_pred             HHHHhC
Q 031271          157 TEKRRN  162 (162)
Q Consensus       157 l~~~~~  162 (162)
                      |+++++
T Consensus       106 l~~~l~  111 (112)
T 1t00_A          106 LEDFIA  111 (112)
T ss_dssp             THHHHC
T ss_pred             HHHHhh
Confidence            998763

>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1

Probab=99.87  E-value=4.7e-21  Score=128.16  Aligned_cols=83  Identities=33%  Similarity=0.721  Sum_probs=78.9

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCC-cEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHHH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQMK  156 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~-v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~~  156 (162)
                      +|+||++||++|+.+.|.++++++.+++ +.|+.+|++.+++++++|++ .++||++++++|+.+.++.|. +.+.|.++
T Consensus        23 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v-~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~  101 (107)
T 1dby_A           23 LVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVASEYGI-RSIPTIMVFKGGKKCETIIGAVPKATIVQT  101 (107)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHHTC-CSSCEEEEESSSSEEEEEESCCCHHHHHHH
T ss_pred             EEEEECCCCHhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCC-CcCCEEEEEeCCEEEEEEeCCCCHHHHHHH
Confidence            9999999999999999999999999975 99999999999999999999 999999999999999999998 88999999


Q ss_pred             HHHHhC
Q 031271          157 TEKRRN  162 (162)
Q Consensus       157 l~~~~~  162 (162)
                      |+++++
T Consensus       102 l~~~l~  107 (107)
T 1dby_A          102 VEKYLN  107 (107)
T ss_dssp             HHHHCC
T ss_pred             HHHHhC
Confidence            998764

>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum}

Probab=99.87  E-value=1.1e-21  Score=137.49  Aligned_cols=107  Identities=25%  Similarity=0.521  Sum_probs=95.4

Q ss_pred             CCCceeEeechhhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhhhhhhHHH
Q 031271           18 KTPLVMELQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYV   97 (162)
Q Consensus        18 ~~~~v~~i~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~~~l   97 (162)
                      ..+.+..+++.++|++.++..  .++++                                 +|+||++||++|+.+.|.|
T Consensus        18 ~~~~v~~l~~~~~~~~~l~~~--~~k~v---------------------------------vv~F~a~wC~~C~~~~p~l   62 (133)
T 3cxg_A           18 GQSIYIELKNTGSLNQVFSST--QNSSI---------------------------------VIKFGAVWCKPCNKIKEYF   62 (133)
T ss_dssp             TTEEEEECCCTTHHHHHHTC---CCSEE---------------------------------EEEEECTTCHHHHHTHHHH
T ss_pred             CCccEEEecChhHHHHHHHhc--CCCEE---------------------------------EEEEECCCCHHHHHHHHHH
Confidence            456788898889999888643  36777                                 9999999999999999999


Q ss_pred             HHHHHhcCCcEEEEEECCCcHHHHHhcCCCCCccEEEEEc--CCe--EEEEEcCCCHHHHHHHHHHHh
Q 031271           98 KDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVK--RGK--EIDRVVGAKKDELQMKTEKRR  161 (162)
Q Consensus        98 ~~~~~~~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~--~Gk--~i~~~~g~~~~~l~~~l~~~~  161 (162)
                      +++++.+ ++.|+.||++.+++++++|+| .++||+++|+  +|+  .+.++.|.+.++|+++|++++
T Consensus        63 ~~l~~~~-~v~~~~vd~~~~~~l~~~~~v-~~~Pt~~~~~~~~g~g~~~~~~~G~~~~~l~~~l~~~l  128 (133)
T 3cxg_A           63 KNQLNYY-YVTLVDIDVDIHPKLNDQHNI-KALPTFEFYFNLNNEWVLVHTVEGANQNDIEKAFQKYC  128 (133)
T ss_dssp             HGGGGTE-ECEEEEEETTTCHHHHHHTTC-CSSSEEEEEEEETTEEEEEEEEESCCHHHHHHHHHHHS
T ss_pred             HHHHHhc-CEEEEEEeccchHHHHHhcCC-CCCCEEEEEEecCCCeEEEEEEcCCCHHHHHHHHHHHH
Confidence            9998887 799999999999999999999 9999999996  888  889999999999999998875

>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A

Probab=99.87  E-value=1e-21  Score=131.02  Aligned_cols=83  Identities=31%  Similarity=0.712  Sum_probs=78.4

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCC-cEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHHH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQMK  156 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~-v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~~  156 (162)
                      +|+||++||++|+.+.|.++++++.+++ +.|+.+|++.+++++++|++ .++||++++++|+.+.++.|. +.+.|.++
T Consensus        21 ~v~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~~~~~~~~~~v-~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~   99 (105)
T 1nsw_A           21 LVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGI-MSIPTLILFKGGRPVKQLIGYQPKEQLEAQ   99 (105)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHSTTTCEEEEEETTTCHHHHHHTTC-CSSSEEEEEETTEEEEEEESCCCHHHHHHH
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECcCCHHHHHHcCC-ccccEEEEEeCCeEEEEEecCCCHHHHHHH
Confidence            9999999999999999999999999976 99999999999999999999 999999999999999999998 88999999


Q ss_pred             HHHHhC
Q 031271          157 TEKRRN  162 (162)
Q Consensus       157 l~~~~~  162 (162)
                      |+++++
T Consensus       100 l~~~l~  105 (105)
T 1nsw_A          100 LADVLQ  105 (105)
T ss_dssp             TTTTTC
T ss_pred             HHHHhC
Confidence            987653

>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A

Probab=99.86  E-value=9.5e-21  Score=125.27  Aligned_cols=83  Identities=29%  Similarity=0.686  Sum_probs=79.2

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHHHH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQMKT  157 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~~l  157 (162)
                      +|+||++||++|+.+.|.++++++.++++.|+.+|++.+++++++|++ .++||++++++|+.+.++.|. +.+.|.++|
T Consensus        20 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v-~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~l   98 (104)
T 2e0q_A           20 VVDFWAEWCAPCLILAPIIEELAEDYPQVGFGKLNSDENPDIAARYGV-MSLPTVIFFKDGEPVDEIIGAVPREEIEIRI   98 (104)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTC-CSSCEEEEEETTEEEEEEESCCCHHHHHHHH
T ss_pred             EEEEECCCChhHHHHhHHHHHHHHHcCCceEEEEECCCCHHHHHhCCc-cccCEEEEEECCeEhhhccCCCCHHHHHHHH
Confidence            999999999999999999999999998899999999999999999999 999999999999999999998 899999999


Q ss_pred             HHHhC
Q 031271          158 EKRRN  162 (162)
Q Consensus       158 ~~~~~  162 (162)
                      +++++
T Consensus        99 ~~~l~  103 (104)
T 2e0q_A           99 KNLLG  103 (104)
T ss_dssp             HHHHT
T ss_pred             HHHhc
Confidence            98763

>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A

Probab=99.86  E-value=1.3e-21  Score=132.52  Aligned_cols=81  Identities=25%  Similarity=0.459  Sum_probs=78.0

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHHHH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQMKT  157 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~~l  157 (162)
                      +|+||++||++|+.+.|.++++++.++++.|+.+|++.+++++++|++ .++||+++|++|+.+.++.|. ++++|.++|
T Consensus        23 vv~f~a~wC~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~l~~~~~v-~~~Pt~~~~~~G~~v~~~~G~~~~~~l~~~~  101 (110)
T 2l6c_A           23 IVFFHKNLCPHCKNMEKVLDKFGARAPQVAISSVDSEARPELMKELGF-ERVPTLVFIRDGKVAKVFSGIMNPRELQALY  101 (110)
T ss_dssp             EEEEECSSCSTHHHHHHHHHHHHTTCTTSCEEEEEGGGCHHHHHHTTC-CSSCEEEEEESSSEEEEEESCCCHHHHHHHH
T ss_pred             EEEEECCCCHhHHHHHHHHHHHHHHCCCcEEEEEcCcCCHHHHHHcCC-cccCEEEEEECCEEEEEEcCCCCHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999 999999999999999999997 999999999


Q ss_pred             HHH
Q 031271          158 EKR  160 (162)
Q Consensus       158 ~~~  160 (162)
                      +++
T Consensus       102 ~~~  104 (110)
T 2l6c_A          102 ASI  104 (110)
T ss_dssp             HTC
T ss_pred             HHH
Confidence            875

>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A

Probab=99.86  E-value=3.9e-21  Score=130.34  Aligned_cols=82  Identities=30%  Similarity=0.578  Sum_probs=78.0

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcC-CcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHHH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYT-DVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQMK  156 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~-~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~~  156 (162)
                      +|+||++||++|+.+.|.+++++++++ ++.|+.||++.+++++++|++ .++||+++|++|+.+.++.|. +.+.|.++
T Consensus        21 lv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v-~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~   99 (112)
T 2voc_A           21 LADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDENQETAGKYGV-MSIPTLLVLKDGEVVETSVGFKPKEALQEL   99 (112)
T ss_dssp             EEEEECTTBGGGGGHHHHHHHHHHHHTTTCEEEEEETTTCCSHHHHTTC-CSBSEEEEEETTEEEEEEESCCCHHHHHHH
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHHHhCCCcEEEEEECCCCHHHHHHcCC-CcccEEEEEeCCEEEEEEeCCCCHHHHHHH
Confidence            999999999999999999999999997 499999999999999999999 999999999999999999998 89999999


Q ss_pred             HHHHh
Q 031271          157 TEKRR  161 (162)
Q Consensus       157 l~~~~  161 (162)
                      ++++.
T Consensus       100 l~~~~  104 (112)
T 2voc_A          100 VNKHL  104 (112)
T ss_dssp             HHTTS
T ss_pred             HHHHH
Confidence            98764

>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1

Probab=99.86  E-value=1.3e-20  Score=127.15  Aligned_cols=82  Identities=29%  Similarity=0.673  Sum_probs=78.5

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCC-cEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHHH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQMK  156 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~-v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~~  156 (162)
                      +|+||++||++|+.+.|.++++++.+++ +.|+.+|++.+++++++|++ .++|++++|++|+.+.++.|. +.+.|.++
T Consensus        29 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~~~~~~~~~~v-~~~Pt~~~~~~G~~~~~~~g~~~~~~l~~~  107 (115)
T 1thx_A           29 LVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPTTVKKYKV-EGVPALRLVKGEQILDSTEGVISKDKLLSF  107 (115)
T ss_dssp             EEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEESTTCHHHHHHTTC-CSSSEEEEEETTEEEEEEESCCCHHHHHHH
T ss_pred             EEEEECCCCHHHHHhHHHHHHHHHHhCCcEEEEEEEcCCCHHHHHHcCC-CceeEEEEEcCCEEEEEecCCCCHHHHHHH
Confidence            9999999999999999999999999975 99999999999999999999 999999999999999999998 89999999


Q ss_pred             HHHHh
Q 031271          157 TEKRR  161 (162)
Q Consensus       157 l~~~~  161 (162)
                      |++++
T Consensus       108 l~~~l  112 (115)
T 1thx_A          108 LDTHL  112 (115)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            99876

>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A

Probab=99.86  E-value=6.9e-21  Score=127.82  Aligned_cols=81  Identities=22%  Similarity=0.453  Sum_probs=77.2

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcC----CcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYT----DVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDEL  153 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~----~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l  153 (162)
                      +|+||++||++|+.+.|.++++++.+.    ++.|+.+|++.+++++++|++ .++||+++|++|+.+.++.|. +.+.|
T Consensus        25 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v-~~~Pt~~~~~~g~~~~~~~g~~~~~~l  103 (111)
T 3uvt_A           25 FIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNICSKYSV-RGYPTLLLFRGGKKVSEHSGGRDLDSL  103 (111)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHHHTCCCCC-CCEEEEEEETTTCHHHHHHTTC-CSSSEEEEEETTEEEEEECSCCSHHHH
T ss_pred             EEEEECCCChhHHHhhHHHHHHHHHhhccCCceEEEEEeccccHhHHHhcCC-CcccEEEEEeCCcEEEeccCCcCHHHH
Confidence            999999999999999999999999874    699999999999999999999 999999999999999999998 99999


Q ss_pred             HHHHHHH
Q 031271          154 QMKTEKR  160 (162)
Q Consensus       154 ~~~l~~~  160 (162)
                      .++|+++
T Consensus       104 ~~~l~~~  110 (111)
T 3uvt_A          104 HRFVLSQ  110 (111)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhc
Confidence            9999876

>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A

Probab=99.86  E-value=3.5e-21  Score=135.19  Aligned_cols=86  Identities=29%  Similarity=0.607  Sum_probs=78.1

Q ss_pred             CceEEEEEecCCChhhhhhhHHHHHHHHhcCC-cEEEEEECCCcHHHHHhcCCCCCccEEEEE-cCCeEEEEEcCC-CHH
Q 031271           75 VLKVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLV-KRGKEIDRVVGA-KKD  151 (162)
Q Consensus        75 ~k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~-v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~-~~Gk~i~~~~g~-~~~  151 (162)
                      +++++|+||++||++|+.+.|.|+++++.|++ +.|+.||++.+++++++|+| .++||+++| ++|+++ ++.|. +.+
T Consensus        51 ~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v-~~~Pt~~~~~~~g~~~-~~~G~~~~~  128 (141)
T 3hxs_A           51 DKPAIVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDKEPELARDFGI-QSIPTIWFVPMKGEPQ-VNMGALSKE  128 (141)
T ss_dssp             SSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTC-CSSSEEEEECSSSCCE-EEESCCCHH
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCceEEEEEECCCCHHHHHHcCC-CCcCEEEEEeCCCCEE-EEeCCCCHH
Confidence            35559999999999999999999999999985 99999999999999999999 999999999 678776 67787 999


Q ss_pred             HHHHHHHHHhC
Q 031271          152 ELQMKTEKRRN  162 (162)
Q Consensus       152 ~l~~~l~~~~~  162 (162)
                      .|+++|+++++
T Consensus       129 ~l~~~l~~~l~  139 (141)
T 3hxs_A          129 QLKGYIDKVLL  139 (141)
T ss_dssp             HHHHHHHHTTC
T ss_pred             HHHHHHHHHHc
Confidence            99999998763

>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}

Probab=99.86  E-value=7.3e-21  Score=136.79  Aligned_cols=83  Identities=30%  Similarity=0.601  Sum_probs=79.1

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcC-CcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHHH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYT-DVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQMK  156 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~-~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~~  156 (162)
                      +|+||++||++|+.+.|.|++++++++ ++.|+.||++++++++++|+| .++||+++|++|+.+.++.|. +.+.|.++
T Consensus        68 lv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~l~~~~~i-~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~  146 (155)
T 2ppt_A           68 LVDFWAPWCGPCRQMAPQFQAAAATLAGQVRLAKIDTQAHPAVAGRHRI-QGIPAFILFHKGRELARAAGARPASELVGF  146 (155)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTSTHHHHHTTC-CSSSEEEEEETTEEEEEEESCCCHHHHHHH
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHHHccCCEEEEEEeCCccHHHHHHcCC-CcCCEEEEEeCCeEEEEecCCCCHHHHHHH
Confidence            999999999999999999999999997 499999999999999999999 999999999999999999998 89999999


Q ss_pred             HHHHhC
Q 031271          157 TEKRRN  162 (162)
Q Consensus       157 l~~~~~  162 (162)
                      |+++++
T Consensus       147 l~~~l~  152 (155)
T 2ppt_A          147 VRGKLG  152 (155)
T ss_dssp             HHHHHC
T ss_pred             HHHHhc
Confidence            998763

>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}

Probab=99.86  E-value=6.8e-21  Score=134.26  Aligned_cols=82  Identities=24%  Similarity=0.435  Sum_probs=78.8

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCC-cEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHHH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQMK  156 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~-v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~~  156 (162)
                      +|+||++||++|+.+.|.|+++++.+++ +.|+.||++.+++++++|+| .++||+++|++|+.+.++.|. +.+.|.++
T Consensus        28 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~v-~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~  106 (140)
T 3hz4_A           28 VVMFYSPACPYCKAMEPYFEEYAKEYGSSAVFGRINIATNPWTAEKYGV-QGTPTFKFFCHGRPVWEQVGQIYPSILKNA  106 (140)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHHTTTSEEEEEETTTCHHHHHHHTC-CEESEEEEEETTEEEEEEESSCCHHHHHHH
T ss_pred             EEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCcCHhHHHHCCC-CcCCEEEEEeCCcEEEEEcCCCCHHHHHHH
Confidence            9999999999999999999999999987 99999999999999999999 999999999999999999998 89999999


Q ss_pred             HHHHh
Q 031271          157 TEKRR  161 (162)
Q Consensus       157 l~~~~  161 (162)
                      |++++
T Consensus       107 l~~~l  111 (140)
T 3hz4_A          107 VRDML  111 (140)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            98775

>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}

Probab=99.86  E-value=8.1e-21  Score=126.70  Aligned_cols=82  Identities=35%  Similarity=0.727  Sum_probs=77.8

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCC-cEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHHH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQMK  156 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~-v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~~  156 (162)
                      +|+||++||++|+.+.|.++++++.+++ +.|+.+|++.+++++++|++ .++|++++|++|+.+.++.|. +.+.|.++
T Consensus        24 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v-~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~  102 (107)
T 2i4a_A           24 LVDFWAEWCGPCKMIGPALGEIGKEFAGKVTVAKVNIDDNPETPNAYQV-RSIPTLMLVRDGKVIDKKVGALPKSQLKAW  102 (107)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHHTTSEEEEEEETTTCCHHHHHTTC-CSSSEEEEEETTEEEEEEESCCCHHHHHHH
T ss_pred             EEEEECCCChhHHHHhHHHHHHHHHhCCcEEEEEEECCCCHHHHHhcCC-CccCEEEEEeCCEEEEEecCCCCHHHHHHH
Confidence            9999999999999999999999999974 99999999999999999999 999999999999999999998 89999999


Q ss_pred             HHHHh
Q 031271          157 TEKRR  161 (162)
Q Consensus       157 l~~~~  161 (162)
                      |++++
T Consensus       103 l~~~l  107 (107)
T 2i4a_A          103 VESAQ  107 (107)
T ss_dssp             HHHTC
T ss_pred             HHhcC
Confidence            98763

>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.86  E-value=2.3e-21  Score=136.31  Aligned_cols=105  Identities=22%  Similarity=0.308  Sum_probs=93.0

Q ss_pred             cCCCceeEeechhhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhhhhhhHH
Q 031271           17 AKTPLVMELQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPY   96 (162)
Q Consensus        17 ~~~~~v~~i~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~~~   96 (162)
                      ...+.+..+ +.++|.+.+..+ ..++++                                 +|+||++||++|+.+.|.
T Consensus         7 ~~~g~v~~i-~~~~~~~~v~~~-~~~~~v---------------------------------vv~f~a~wC~~C~~~~p~   51 (135)
T 2dbc_A            7 GKFGELREI-SGNQYVNEVTNA-EKDLWV---------------------------------VIHLYRSSVPMCLVVNQH   51 (135)
T ss_dssp             CCCCSCEEC-CHHHHHHHTTTC-CSSCEE---------------------------------EEEECCTTCHHHHHHHHH
T ss_pred             CCCCceEEc-CHHHHHHHHHhc-CCCCEE---------------------------------EEEEECCCChHHHHHHHH
Confidence            456778999 789999988754 234677                                 999999999999999999


Q ss_pred             HHHHHHhcCCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC--------CHHHHHHHHHHH
Q 031271           97 VKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA--------KKDELQMKTEKR  160 (162)
Q Consensus        97 l~~~~~~~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~--------~~~~l~~~l~~~  160 (162)
                      |++++++|+++.|+.||++..+   ++|+| ..+||+++|++|+.+.++.|.        +.+.|+++|.++
T Consensus        52 l~~la~~~~~v~~~~vd~~~~~---~~~~i-~~~Pt~~~~~~G~~v~~~~G~~~~~~~~~~~~~l~~~l~~~  119 (135)
T 2dbc_A           52 LSVLARKFPETKFVKAIVNSCI---EHYHD-NCLPTIFVYKNGQIEGKFIGIIECGGINLKLEELEWKLSEV  119 (135)
T ss_dssp             HHHHHHHCSSEEEEEECCSSSC---SSCCS-SCCSEEEEESSSSCSEEEESTTTTTCTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHCCCcEEEEEEhhcCc---ccCCC-CCCCEEEEEECCEEEEEEEeEEeeCCCcCCHHHHHHHHHHc
Confidence            9999999999999999999885   79999 999999999999999999987        588899999876

>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}

Probab=99.86  E-value=1.8e-21  Score=135.07  Aligned_cols=87  Identities=23%  Similarity=0.465  Sum_probs=81.4

Q ss_pred             eeCceEEEEEecCCChhhhhhhHHHHHHHHhcCC-cEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CH
Q 031271           73 FWVLKVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KK  150 (162)
Q Consensus        73 ~~~k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~-v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~  150 (162)
                      ..+++++|+||++||++|+.+.|.++++++++++ +.|+.||++.+++++++|+| .++||++++++|+.+.++.|. +.
T Consensus        40 ~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v-~~~Pt~~~~~~G~~~~~~~G~~~~  118 (128)
T 3ul3_B           40 MKNTVIVLYFFAKWCQACTMQSTEMDKLQKYYGKRIYLLKVDLDKNESLARKFSV-KSLPTIILLKNKTMLARKDHFVSS  118 (128)
T ss_dssp             SCCSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGEEEEEEEGGGCHHHHHHTTC-CSSSEEEEEETTEEEEEESSCCCH
T ss_pred             ccCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCC-CCcCEEEEEECCEEEEEecCCCCH
Confidence            4568889999999999999999999999999974 99999999999999999999 999999999999999999998 89


Q ss_pred             HHHHHHHHHH
Q 031271          151 DELQMKTEKR  160 (162)
Q Consensus       151 ~~l~~~l~~~  160 (162)
                      +.|+++|+++
T Consensus       119 ~~l~~~l~~~  128 (128)
T 3ul3_B          119 NDLIALIKKH  128 (128)
T ss_dssp             HHHHHHHTTC
T ss_pred             HHHHHHHHhC
Confidence            9999999764

>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.86  E-value=5.4e-21  Score=133.93  Aligned_cols=107  Identities=23%  Similarity=0.388  Sum_probs=92.2

Q ss_pred             cccCCCceeEeechhhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhhhhhh
Q 031271           15 IHAKTPLVMELQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIE   94 (162)
Q Consensus        15 ~~~~~~~v~~i~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~   94 (162)
                      .....+.+..+ +.++|++.+.    .++++                                 +|+||++||++|+.+.
T Consensus        12 ~~~~~~~v~~l-~~~~~~~~~~----~~~~v---------------------------------lv~f~a~wC~~C~~~~   53 (140)
T 2dj1_A           12 EVKEENGVWVL-NDGNFDNFVA----DKDTV---------------------------------LLEFYAPWCGHCKQFA   53 (140)
T ss_dssp             CCEEETTEEEC-CTTTHHHHHT----TCSEE---------------------------------EEEECCTTCHHHHTTH
T ss_pred             ccCCCCCCEEc-ChHhHHHHHh----cCCeE---------------------------------EEEEECCCCHHHHHhh
Confidence            33345678887 4578887763    36777                                 9999999999999999


Q ss_pred             HHHHHHHHhcCC----cEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHHHHHHHh
Q 031271           95 PYVKDFAAMYTD----VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQMKTEKRR  161 (162)
Q Consensus        95 ~~l~~~~~~~~~----v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~~l~~~~  161 (162)
                      |.|+++++.+++    +.|+.||++.+++++++|+| .++||+++|++|+ +.++.|. +.+.|.++|++++
T Consensus        54 p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v-~~~Pt~~~~~~G~-~~~~~g~~~~~~l~~~l~~~~  123 (140)
T 2dj1_A           54 PEYEKIASTLKDNDPPIAVAKIDATSASMLASKFDV-SGYPTIKILKKGQ-AVDYDGSRTQEEIVAKVREVS  123 (140)
T ss_dssp             HHHHHHHHHHHSSSSCCEEEEECTTTCHHHHHHTTC-CSSSEEEEEETTE-EEECCSCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCCceEEEEEeCcccHHHHHHCCC-CccCeEEEEECCc-EEEcCCCCCHHHHHHHHHHhc
Confidence            999999988753    99999999999999999999 9999999999999 6677887 8999999999875

>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A

Probab=99.86  E-value=1.4e-20  Score=125.68  Aligned_cols=82  Identities=34%  Similarity=0.676  Sum_probs=78.1

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCC-cEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHHH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQMK  156 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~-v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~~  156 (162)
                      +|+||++||++|+.+.|.++++++.+++ +.|+.+|++.+++++++|++ .++|++++|++|+.+.++.|. +.+.|.++
T Consensus        22 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v-~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~  100 (109)
T 2yzu_A           22 LVDFWAEWCAPCRMIAPILEEIAKEYEGKLLVAKLDVDENPKTAMRYRV-MSIPTVILFKDGQPVEVLVGAQPKRNYQAK  100 (109)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHTBTTBEEEEEETTTCHHHHHHTTC-CSSSEEEEEETTEEEEEEESCCCHHHHHHH
T ss_pred             EEEEECCCCHHHHHhhHHHHHHHHHhhCceEEEEEECCCCHhHHHhCCC-CcCCEEEEEeCCcEeeeEeCCCCHHHHHHH
Confidence            9999999999999999999999999984 99999999999999999999 999999999999999999998 89999999


Q ss_pred             HHHHh
Q 031271          157 TEKRR  161 (162)
Q Consensus       157 l~~~~  161 (162)
                      |++++
T Consensus       101 l~~~l  105 (109)
T 2yzu_A          101 IEKHL  105 (109)
T ss_dssp             HHTTC
T ss_pred             HHHHh
Confidence            98865

>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C

Probab=99.86  E-value=1.3e-20  Score=125.30  Aligned_cols=82  Identities=30%  Similarity=0.684  Sum_probs=78.0

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCC-cEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHHH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQMK  156 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~-v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~~  156 (162)
                      +|+||++||++|+.+.|.++++++.+++ +.|+.+|++.+++++++|++ .++||++++++|+.+.++.|. +.+.|.++
T Consensus        22 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v-~~~Pt~~~~~~g~~~~~~~G~~~~~~l~~~  100 (105)
T 1fb6_A           22 MVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNI-RSIPTVLFFKNGERKESIIGAVPKSTLTDS  100 (105)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTC-CSSSEEEEEETTEEEEEEEECCCHHHHHHH
T ss_pred             EEEEECCCChHHHHHHHHHHHHHHHhcCceEEEEEcCcchHHHHHhCCC-CcccEEEEEeCCeEEEEEecCCCHHHHHHH
Confidence            9999999999999999999999999986 99999999999999999999 999999999999999999998 88999999


Q ss_pred             HHHHh
Q 031271          157 TEKRR  161 (162)
Q Consensus       157 l~~~~  161 (162)
                      |++++
T Consensus       101 l~~~l  105 (105)
T 1fb6_A          101 IEKYL  105 (105)
T ss_dssp             HHHHC
T ss_pred             HHhhC
Confidence            98864

>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa}

Probab=99.86  E-value=9.3e-23  Score=141.01  Aligned_cols=110  Identities=37%  Similarity=0.786  Sum_probs=101.8

Q ss_pred             CCCceeEeechhhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhhhhhhHHH
Q 031271           18 KTPLVMELQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYV   97 (162)
Q Consensus        18 ~~~~v~~i~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~~~l   97 (162)
                      ..+.+..+++.++|++.+..+...++++                                 +|+||++||++|+.+.|.|
T Consensus        12 ~~~~~~~i~~~~~~~~~l~~~~~~~~~~---------------------------------vv~f~~~~C~~C~~~~~~l   58 (130)
T 1wmj_A           12 EEGVVIACHNKDEFDAQMTKAKEAGKVV---------------------------------IIDFTASWCGPCRFIAPVF   58 (130)
T ss_dssp             SCSSSBCCSSSHHHHHHHHHHHTTTCBC---------------------------------BEECCSSSCSCSSSSHHHH
T ss_pred             cCcceEEcCCHHHHHHHHHHHhhcCCEE---------------------------------EEEEECCCChhHHHHHHHH
Confidence            4567888989999999999877678888                                 9999999999999999999


Q ss_pred             HHHHHhcCCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCCCHHHHHHHHHHHh
Q 031271           98 KDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQMKTEKRR  161 (162)
Q Consensus        98 ~~~~~~~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~~~~~l~~~l~~~~  161 (162)
                      +++.+.++++.|+.||++.+++++++|++ .++||++++++|+.+.++.|.+.+.|.++|++++
T Consensus        59 ~~~~~~~~~v~~~~v~~~~~~~~~~~~~v-~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~l~~~~  121 (130)
T 1wmj_A           59 AEYAKKFPGAVFLKVDVDELKEVAEKYNV-EAMPTFLFIKDGAEADKVVGARKDDLQNTIVKHV  121 (130)
T ss_dssp             HHHHHHCTTBCCEECCTTTSGGGHHHHTC-CSSCCCCBCTTTTCCBCCCTTCTTTHHHHHHHHT
T ss_pred             HHHHHHCCCCEEEEEeccchHHHHHHcCC-CccceEEEEeCCeEEEEEeCCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999 9999999999999999999988889999998875

>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}

Probab=99.86  E-value=6.3e-21  Score=132.78  Aligned_cols=83  Identities=29%  Similarity=0.581  Sum_probs=78.9

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCC-cEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHHH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQMK  156 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~-v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~~  156 (162)
                      +|+||++||++|+.+.|.++++++.+++ +.|+.||++.+++++++|++ .++||+++|++|+.+.++.|. +.+.|.++
T Consensus        44 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~v-~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~  122 (128)
T 2o8v_B           44 LVDFWAEWCGPAKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGI-RGIPTLLLFKNGEVAATKVGALSKGQLKEF  122 (128)
T ss_dssp             EEEEECSSCHHHHHTHHHHHHHHHHTTTTEEEEEEETTTCCTTSGGGTC-CSSSEEEEEETTEEEEEEESCCCHHHHHHH
T ss_pred             EEEEECCCCHHHHHHhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCC-CccCEEEEEeCCEEEEEEcCCCCHHHHHHH
Confidence            9999999999999999999999999974 99999999999999999999 999999999999999999998 89999999


Q ss_pred             HHHHhC
Q 031271          157 TEKRRN  162 (162)
Q Consensus       157 l~~~~~  162 (162)
                      |+++++
T Consensus       123 l~~~l~  128 (128)
T 2o8v_B          123 LDANLA  128 (128)
T ss_dssp             HHHHHC
T ss_pred             HHHhhC
Confidence            998764

>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}

Probab=99.86  E-value=3.3e-21  Score=135.16  Aligned_cols=81  Identities=17%  Similarity=0.165  Sum_probs=76.8

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEEC---------CCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDV---------DWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-  148 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~---------d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-  148 (162)
                      +|+||++||++|+.+.|.|++++++++ +.|+.||+         +.+++++++|+| .++||++++++|+.+.++.|. 
T Consensus        35 lv~F~a~wC~~C~~~~p~l~~l~~~~~-v~~~~vd~~~~~~~~~~d~~~~l~~~~~v-~~~Pt~~~~~~G~~v~~~~G~~  112 (135)
T 3emx_A           35 ILAVYSKTCPHCHRDWPQLIQASKEVD-VPIVMFIWGSLIGERELSAARLEMNKAGV-EGTPTLVFYKEGRIVDKLVGAT  112 (135)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHTTCC-SCEEEEEECTTCCHHHHHHHHHHHHHHTC-CSSSEEEEEETTEEEEEEESCC
T ss_pred             EEEEECCcCHhhhHhChhHHHHHHHCC-CEEEEEECCCchhhhhhhhhHHHHHHcCC-ceeCeEEEEcCCEEEEEEeCCC
Confidence            999999999999999999999999997 99999999         888999999999 999999999999999999999 


Q ss_pred             CHHHHHHHHHHHh
Q 031271          149 KKDELQMKTEKRR  161 (162)
Q Consensus       149 ~~~~l~~~l~~~~  161 (162)
                      +.+.+..+++++.
T Consensus       113 ~~~~~~~~i~~~~  125 (135)
T 3emx_A          113 PWSLKVEKAREIY  125 (135)
T ss_dssp             CHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHh
Confidence            8888888888765

>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.85  E-value=1.3e-20  Score=130.47  Aligned_cols=110  Identities=20%  Similarity=0.321  Sum_probs=92.5

Q ss_pred             CcccCCCceeEeechhhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhhhhh
Q 031271           14 FIHAKTPLVMELQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFI   93 (162)
Q Consensus        14 ~~~~~~~~v~~i~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~   93 (162)
                      ......+.+..++. ++|++.+.   +.++++                                 +|+||++||++|+.+
T Consensus        11 ~l~~~~~~v~~l~~-~~f~~~~~---~~~~~~---------------------------------lv~f~a~wC~~C~~~   53 (130)
T 2dml_A           11 GLYSSSDDVIELTP-SNFNREVI---QSDGLW---------------------------------LVEFYAPWCGHCQRL   53 (130)
T ss_dssp             CSSCTTSSSEECCT-TTHHHHTT---TCSSCE---------------------------------EEEEECTTCSTTGGG
T ss_pred             cccCCCCCcEECCH-HHHHHHHh---cCCCeE---------------------------------EEEEECCCCHHHHhh
Confidence            33444566777754 77777663   346777                                 999999999999999


Q ss_pred             hHHHHHHHHhcCC-cEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeE-EEEEcCC-CHHHHHHHHHHHh
Q 031271           94 EPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKE-IDRVVGA-KKDELQMKTEKRR  161 (162)
Q Consensus        94 ~~~l~~~~~~~~~-v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~-i~~~~g~-~~~~l~~~l~~~~  161 (162)
                      .|.|+++++.+++ +.|+.||++.+++++++|++ .++||+++|++|+. +.++.|. +.+.|.++|.+++
T Consensus        54 ~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v-~~~Pt~~~~~~~~~~~~~~~G~~~~~~l~~~l~~~l  123 (130)
T 2dml_A           54 TPEWKKAATALKDVVKVGAVNADKHQSLGGQYGV-QGFPTIKIFGANKNKPEDYQGGRTGEAIVDAALSAL  123 (130)
T ss_dssp             HHHHHHHHHHTTTTSEEEEEETTTCHHHHHHHTC-CSSSEEEEESSCTTSCEECCSCCSHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhcCceEEEEEeCCCCHHHHHHcCC-CccCEEEEEeCCCCeEEEeecCCCHHHHHHHHHHHH
Confidence            9999999999987 99999999999999999999 99999999976654 7788888 8899999998764

>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}

Probab=99.85  E-value=2.1e-20  Score=132.54  Aligned_cols=82  Identities=32%  Similarity=0.615  Sum_probs=78.4

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcC-CcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHHH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYT-DVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQMK  156 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~-~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~~  156 (162)
                      +|+||++||++|+.+.|.|+++++.+. ++.|+.||++.+++++++|+| .++||+++|++|+.+.++.|. +.+.|.++
T Consensus        59 lv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v-~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~  137 (148)
T 3p2a_A           59 VIDFWAPWCGPCRSFAPIFAETAAERAGKVRFVKVNTEAEPALSTRFRI-RSIPTIMLYRNGKMIDMLNGAVPKAPFDNW  137 (148)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTC-CSSSEEEEEETTEEEEEESSCCCHHHHHHH
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHHHcCCceEEEEEECcCCHHHHHHCCC-CccCEEEEEECCeEEEEEeCCCCHHHHHHH
Confidence            999999999999999999999999995 499999999999999999999 999999999999999999998 89999999


Q ss_pred             HHHHh
Q 031271          157 TEKRR  161 (162)
Q Consensus       157 l~~~~  161 (162)
                      |++++
T Consensus       138 l~~~l  142 (148)
T 3p2a_A          138 LDEQL  142 (148)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            99875

>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.85  E-value=1.5e-20  Score=130.37  Aligned_cols=82  Identities=20%  Similarity=0.382  Sum_probs=77.3

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcC-----CcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYT-----DVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDE  152 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~-----~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~  152 (162)
                      +|+||++||++|+.+.|.++++++.++     ++.|+.||++.+++++++|+| .++||+++|++|+.+.++.|. +.+.
T Consensus        29 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v-~~~Pt~~~~~~g~~~~~~~G~~~~~~  107 (133)
T 1x5d_A           29 MVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATVNQVLASRYGI-RGFPTIKIFQKGESPVDYDGGRTRSD  107 (133)
T ss_dssp             EEEEECTTCHHHHTHHHHHHHHHHHHHHHTTTSEEEEEEETTTCCHHHHHHTC-CSSSEEEEEETTEEEEEECSCCSHHH
T ss_pred             EEEEECCCCHHHHhhcHHHHHHHHHHHhhcCCcEEEEEEECCCCHHHHHhCCC-CeeCeEEEEeCCCceEEecCCCCHHH
Confidence            999999999999999999999999885     499999999999999999999 999999999999999999998 8999


Q ss_pred             HHHHHHHHh
Q 031271          153 LQMKTEKRR  161 (162)
Q Consensus       153 l~~~l~~~~  161 (162)
                      |.++|++++
T Consensus       108 l~~~l~~~~  116 (133)
T 1x5d_A          108 IVSRALDLF  116 (133)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999998765

>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}

Probab=99.85  E-value=2e-20  Score=131.15  Aligned_cols=84  Identities=26%  Similarity=0.574  Sum_probs=77.1

Q ss_pred             ceEEEEEecCCChhhhhhhHHHHHHHHhcCC-cEEEEEECCCcHHHHHhcCCCCCccEEEEE-cCCeEEEEEcCC-CHHH
Q 031271           76 LKVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLV-KRGKEIDRVVGA-KKDE  152 (162)
Q Consensus        76 k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~-v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~-~~Gk~i~~~~g~-~~~~  152 (162)
                      ++++|+||++||++|+.+.|.|+++++.+++ +.|+.||++.+++++++|++ .++||+++| ++|+.+ ++.|. +.+.
T Consensus        39 k~~lv~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~v-~~~Pt~~~~~~~G~~~-~~~G~~~~~~  116 (136)
T 2l5l_A           39 KPAIVDFYADWCGPCKMVAPILDELAKEYDGQIVIYKVDTEKEQELAGAFGI-RSIPSILFIPMEGKPE-MAQGAMPKAS  116 (136)
T ss_dssp             SCEEEEEECTTSHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTC-CSSCEEEEECSSSCCE-EEESCCCHHH
T ss_pred             CEEEEEEECCcCHHHHHHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHcCC-CCCCEEEEECCCCcEE-EEeCCCCHHH
Confidence            4449999999999999999999999999975 99999999999999999999 999999999 899988 56676 9999


Q ss_pred             HHHHHHHHh
Q 031271          153 LQMKTEKRR  161 (162)
Q Consensus       153 l~~~l~~~~  161 (162)
                      |+++|+++.
T Consensus       117 l~~~l~~~~  125 (136)
T 2l5l_A          117 FKKAIDEFL  125 (136)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999999875

>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A

Probab=99.85  E-value=1.6e-20  Score=128.18  Aligned_cols=82  Identities=34%  Similarity=0.693  Sum_probs=77.5

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCC-cEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHHH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQMK  156 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~-v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~~  156 (162)
                      +|+||++||++|+.+.|.++++++.+++ +.|+.||++.+++++++|++ .++||++++++|+.+.++.|. +.+.|.++
T Consensus        34 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i-~~~Pt~~~~~~g~~~~~~~G~~~~~~l~~~  112 (121)
T 2i1u_A           34 LVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPETARNFQV-VSIPTLILFKDGQPVKRIVGAKGKAALLRE  112 (121)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTC-CSSSEEEEEETTEEEEEEESCCCHHHHHHH
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCCHHHHHhcCC-CcCCEEEEEECCEEEEEecCCCCHHHHHHH
Confidence            9999999999999999999999999974 99999999999999999999 999999999999999999998 78999999


Q ss_pred             HHHHh
Q 031271          157 TEKRR  161 (162)
Q Consensus       157 l~~~~  161 (162)
                      |++++
T Consensus       113 l~~~l  117 (121)
T 2i1u_A          113 LSDVV  117 (121)
T ss_dssp             TCSCC
T ss_pred             HHHHH
Confidence            88764

>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0

Probab=99.85  E-value=1.5e-20  Score=130.15  Aligned_cols=81  Identities=12%  Similarity=0.119  Sum_probs=72.4

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhc------CCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEE--EEEcCC-C
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMY------TDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEI--DRVVGA-K  149 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~------~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i--~~~~g~-~  149 (162)
                      +|+||++||++|+.+.|.|+++++.+      +++.|+.||++++++++++|+| .++||+++|++|+.+  .++.|. +
T Consensus        37 lv~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v-~~~Pt~~~~~~g~~~~~~~~~G~~~  115 (127)
T 3h79_A           37 FVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARIDGEKYPDVIERMRV-SGFPTMRYYTRIDKQEPFEYSGQRY  115 (127)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHHHTSTTTTTEEEEEEETTTCHHHHHHTTC-CSSSEEEEECSSCSSSCEECCSCCC
T ss_pred             EEEEECCccHHHHHHhHHHHHHHHHHHhcccCCCeEEEEEEccccHhHHHhcCC-ccCCEEEEEeCCCCCCceEecCCcc
Confidence            99999999999999999999998754      2499999999999999999999 999999999877653  456677 9


Q ss_pred             HHHHHHHHHHH
Q 031271          150 KDELQMKTEKR  160 (162)
Q Consensus       150 ~~~l~~~l~~~  160 (162)
                      .+.|.++|+++
T Consensus       116 ~~~l~~~i~~~  126 (127)
T 3h79_A          116 LSLVDSFVFQN  126 (127)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhc
Confidence            99999999875

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.85  E-value=1.6e-20  Score=146.32  Aligned_cols=106  Identities=19%  Similarity=0.347  Sum_probs=94.1

Q ss_pred             CCceeEeechhhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhhhhhhHHHH
Q 031271           19 TPLVMELQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYVK   98 (162)
Q Consensus        19 ~~~v~~i~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~~~l~   98 (162)
                      .+.|..++. ++|++.+..  ..++++                                 +|+||++||++|+.+.|.++
T Consensus         6 ~~~v~~~~~-~~f~~~~~~--~~~~~v---------------------------------~v~f~a~wC~~C~~~~p~~~   49 (287)
T 3qou_A            6 VENIVNINE-SNLQQVLEQ--SMTTPV---------------------------------LFYFWSERSQHCLQLTPILE   49 (287)
T ss_dssp             CTTEEECCT-TTHHHHHTT--TTTSCE---------------------------------EEEEECTTCTTTTTTHHHHH
T ss_pred             CCccEECCH-HHHHHHHHh--cCCCeE---------------------------------EEEEECCCChHHHHHHHHHH
Confidence            456777755 888887743  236777                                 99999999999999999999


Q ss_pred             HHHHhcCC-cEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHHHHHHHh
Q 031271           99 DFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQMKTEKRR  161 (162)
Q Consensus        99 ~~~~~~~~-v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~~l~~~~  161 (162)
                      ++.+++++ +.|+.||++.+++++++|+| .++||+++|++|+.+.++.|. +.+.+..++.++.
T Consensus        50 ~~~~~~~~~~~~~~vd~~~~~~~~~~~~v-~~~Pt~~~~~~G~~~~~~~g~~~~~~l~~~l~~~l  113 (287)
T 3qou_A           50 SLAAQYNGQFILAKLDCDAEQMIAAQFGL-RAIPTVYLFQNGQPVDGFQGPQPEEAIRALLDXVL  113 (287)
T ss_dssp             HHHHHHTSSSEEEEEETTTCHHHHHTTTC-CSSSEEEEEETTEEEEEEESCCCHHHHHHHHHHHS
T ss_pred             HHHHHcCCCeEEEEEeCccCHHHHHHcCC-CCCCeEEEEECCEEEEEeeCCCCHHHHHHHHHHHc
Confidence            99999987 99999999999999999999 999999999999999999998 8889999988753

>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A

Probab=99.84  E-value=9.5e-21  Score=134.38  Aligned_cols=104  Identities=21%  Similarity=0.234  Sum_probs=88.9

Q ss_pred             eeEeechhhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhhhhhhHHHHHHH
Q 031271           22 VMELQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYVKDFA  101 (162)
Q Consensus        22 v~~i~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~~~l~~~~  101 (162)
                      +..+.+.++|++.+..  ..++++                                 +|+||++||++|+.+.|.|++++
T Consensus         5 l~~i~~~~~~~~~v~~--~~~k~v---------------------------------lv~F~a~wC~~C~~~~p~l~~l~   49 (142)
T 1qgv_A            5 LPHLHNGWQVDQAILS--EEDRVV---------------------------------VIRFGHDWDPTCMKMDEVLYSIA   49 (142)
T ss_dssp             SCBCCSHHHHHHHHHT--CSSSEE---------------------------------EEEEECTTSHHHHHHHHHHHHHH
T ss_pred             HhccCCHHHHHHHHHh--cCCCEE---------------------------------EEEEECCCCHHHHHHHHHHHHHH
Confidence            5567778888887753  236777                                 99999999999999999999999


Q ss_pred             HhcC-CcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEE---------EcCC--CHHHHHHHHHHHh
Q 031271          102 AMYT-DVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDR---------VVGA--KKDELQMKTEKRR  161 (162)
Q Consensus       102 ~~~~-~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~---------~~g~--~~~~l~~~l~~~~  161 (162)
                      ++++ ++.|+.||++++++++++|+| .++||+++|++|+.+.+         +.|.  +.++|+++|++++
T Consensus        50 ~~~~~~v~~~~vd~d~~~~~~~~~~i-~~~Pt~~~~~~G~~v~~~~g~~~~~~~~g~~~~~~~l~~~i~~~~  120 (142)
T 1qgv_A           50 EKVKNFAVIYLVDITEVPDFNKMYEL-YDPCTVMFFFRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVY  120 (142)
T ss_dssp             HHHTTTEEEEEEETTTCCTTTTSSCS-CSSCEEEEEETTEEEEEECC------CCSCCSCHHHHHHHHHHHH
T ss_pred             HHhCCCeEEEEEccccCHHHHHHcCC-CCCCEEEEEECCcEEEEecCCCCcceeeeecCcHHHHHHHHHHHH
Confidence            9995 499999999999999999999 99999999999999873         4454  4888888888764

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}

Probab=99.84  E-value=2.9e-20  Score=140.68  Aligned_cols=82  Identities=30%  Similarity=0.634  Sum_probs=79.1

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCC-cEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHHH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQMK  156 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~-v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~~  156 (162)
                      +|+||++||++|+.+.|.|+++++.+++ +.|+.||++.+++++++|+| .++||+++|++|+.+.++.|. +.+.|.++
T Consensus        34 vv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~l~~~~~v-~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~  112 (222)
T 3dxb_A           34 LVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGI-RGIPTLLLFKNGEVAATKVGALSKGQLKEF  112 (222)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCTTTGGGGTC-CSBSEEEEEETTEEEEEEESCCCHHHHHHH
T ss_pred             EEEEECCcCHHHHHHHHHHHHHHHHhcCCcEEEEEECCCCHHHHHHcCC-CcCCEEEEEECCeEEEEeccccChHHHHHH
Confidence            9999999999999999999999999987 99999999999999999999 999999999999999999999 89999999


Q ss_pred             HHHHh
Q 031271          157 TEKRR  161 (162)
Q Consensus       157 l~~~~  161 (162)
                      |++++
T Consensus       113 l~~~l  117 (222)
T 3dxb_A          113 LDANL  117 (222)
T ss_dssp             HHHHS
T ss_pred             HHhhc
Confidence            99875

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}

Probab=99.84  E-value=3.8e-20  Score=127.61  Aligned_cols=87  Identities=13%  Similarity=0.191  Sum_probs=80.4

Q ss_pred             eCceEEEEEecCCChhhhhhhHHHHHHHHhc-CCcEEEEEE--CCCcHHHHHhcCCCCCccEEEEEc-CCeEEEEEcCC-
Q 031271           74 WVLKVVIYYTAAWCGPCKFIEPYVKDFAAMY-TDVQFIKID--VDWLPEAAKAFDLIDVLPTFVLVK-RGKEIDRVVGA-  148 (162)
Q Consensus        74 ~~k~vvv~F~a~wC~~C~~~~~~l~~~~~~~-~~v~f~~vd--~d~~~~l~~~~~i~~~~Ptiv~~~-~Gk~i~~~~g~-  148 (162)
                      .+++++|+||++||++|+.+.|.++++++.+ +++.|+.||  ++.+++++++|++ .++||++++. +|+.+.++.|. 
T Consensus        25 ~~k~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~d~~~~~~~~~~v-~~~Pt~~~~~~~G~~~~~~~G~~  103 (126)
T 2l57_A           25 EGIPTIIMFKTDTCPYCVEMQKELSYVSKEREGKFNIYYARLEEEKNIDLAYKYDA-NIVPTTVFLDKEGNKFYVHQGLM  103 (126)
T ss_dssp             SSSCEEEEEECSSCHHHHHHHHHHHHHHHHSSSSCEEEEEETTSSHHHHHHHHTTC-CSSSEEEEECTTCCEEEEEESCC
T ss_pred             CCCcEEEEEECCCCccHHHHHHHHHHHHHHhcCCeEEEEEeCCCCchHHHHHHcCC-cceeEEEEECCCCCEEEEecCCC
Confidence            4466699999999999999999999999999 469999999  9999999999999 9999999997 99999999998 


Q ss_pred             CHHHHHHHHHHHh
Q 031271          149 KKDELQMKTEKRR  161 (162)
Q Consensus       149 ~~~~l~~~l~~~~  161 (162)
                      +.+.|.++|++++
T Consensus       104 ~~~~l~~~l~~~~  116 (126)
T 2l57_A          104 RKNNIETILNSLG  116 (126)
T ss_dssp             CHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHh
Confidence            8999999999875

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A

Probab=99.84  E-value=1.3e-20  Score=131.91  Aligned_cols=108  Identities=19%  Similarity=0.337  Sum_probs=94.6

Q ss_pred             cCCCceeEeechhhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhhhhhhHH
Q 031271           17 AKTPLVMELQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPY   96 (162)
Q Consensus        17 ~~~~~v~~i~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~~~   96 (162)
                      ...+.+..+.+.++++..+..++  ++++                                 +|+||++||++|+.+.|.
T Consensus         8 ~~~~~f~~~~~~~~~~~~l~~~~--~k~v---------------------------------lv~F~a~wC~~C~~~~~~   52 (134)
T 2fwh_A            8 QTHLNFTQIKTVDELNQALVEAK--GKPV---------------------------------MLDLYADWCVACKEFEKY   52 (134)
T ss_dssp             --CCCCEECCSHHHHHHHHHHHT--TSCE---------------------------------EEEEECTTCHHHHHHHHH
T ss_pred             ccCCCcEEecCHHHHHHHHHHhc--CCcE---------------------------------EEEEECCCCHHHHHHHHH
Confidence            34566777888999999998653  6788                                 999999999999999999


Q ss_pred             H---HHHHHhcCCcEEEEEEC----CCcHHHHHhcCCCCCccEEEEE-cCCeEE--EEEcCC-CHHHHHHHHHHH
Q 031271           97 V---KDFAAMYTDVQFIKIDV----DWLPEAAKAFDLIDVLPTFVLV-KRGKEI--DRVVGA-KKDELQMKTEKR  160 (162)
Q Consensus        97 l---~~~~~~~~~v~f~~vd~----d~~~~l~~~~~i~~~~Ptiv~~-~~Gk~i--~~~~g~-~~~~l~~~l~~~  160 (162)
                      +   +++.+.++++.++.||+    +...+++++|++ .++||+++| ++|+++  .++.|. +.++|+++|+++
T Consensus        53 ~~~~~~l~~~~~~~~~~~vd~~~~~~~~~~l~~~~~v-~~~Pt~~~~d~~G~~v~~~~~~G~~~~~~l~~~l~~~  126 (134)
T 2fwh_A           53 TFSDPQVQKALADTVLLQANVTANDAQDVALLKHLNV-LGLPTILFFDGQGQEHPQARVTGFMDAETFSAHLRDR  126 (134)
T ss_dssp             TTTSHHHHHHTTTSEEEEEECTTCCHHHHHHHHHTTC-CSSSEEEEECTTSCBCGGGCBCSCCCHHHHHHHHHHC
T ss_pred             hcCCHHHHHHhcCcEEEEEeCCCCcchHHHHHHHcCC-CCCCEEEEECCCCCEeeeeeeeeccCHHHHHHHHHhc
Confidence            9   99999998999999999    556789999999 999999999 899998  688898 899999999864

>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.83  E-value=3.1e-21  Score=135.35  Aligned_cols=104  Identities=21%  Similarity=0.358  Sum_probs=88.1

Q ss_pred             CCCceeEeechhhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhhhhhhHHH
Q 031271           18 KTPLVMELQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYV   97 (162)
Q Consensus        18 ~~~~v~~i~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~~~l   97 (162)
                      ..+.+..++ .++|++.+..  ..++++                                 +|+||++||++|+.+.|.|
T Consensus         5 ~~~~v~~l~-~~~f~~~~~~--~~~~~v---------------------------------lv~f~a~wC~~C~~~~p~~   48 (137)
T 2dj0_A            5 SSGYIKYFN-DKTIDEELER--DKRVTW---------------------------------IVEFFANWSNDCQSFAPIY   48 (137)
T ss_dssp             CCSCCEECC-TTHHHHHHHH--STTSCE---------------------------------EEEECCTTCSTTTTTHHHH
T ss_pred             CCceEEEcc-HhhHHHHHhc--CCCCEE---------------------------------EEEEECCCCHHHHHHHHHH
Confidence            345677775 4889988854  235577                                 9999999999999999999


Q ss_pred             HHHHHhcC--CcEEEEEECCCcHHHHHhcCCCC------CccEEEEEcCCeEEEEEcCC-CHHHHHHHHH
Q 031271           98 KDFAAMYT--DVQFIKIDVDWLPEAAKAFDLID------VLPTFVLVKRGKEIDRVVGA-KKDELQMKTE  158 (162)
Q Consensus        98 ~~~~~~~~--~v~f~~vd~d~~~~l~~~~~i~~------~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~~l~  158 (162)
                      ++++++++  ++.|+.||++++++++++|++ .      ++||+++|++|+.+.++.|. +.+.|.++|.
T Consensus        49 ~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~v-~~~~~~~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~  117 (137)
T 2dj0_A           49 ADLSLKYNCTGLNFGKVDVGRYTDVSTRYKV-STSPLTKQLPTLILFQGGKEAMRRPQIDKKGRAVSWTF  117 (137)
T ss_dssp             HHHHHHHCSSSCEEEECCTTTCHHHHHHTTC-CCCSSSSCSSEEEEESSSSEEEEESCBCSSSCBCCCCC
T ss_pred             HHHHHHhCCCCeEEEEEeCccCHHHHHHccC-cccCCcCCCCEEEEEECCEEEEEecCcCchHHHHHHHh
Confidence            99999996  599999999999999999999 9      99999999999999999987 6555555443

>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.83  E-value=7.9e-20  Score=126.02  Aligned_cols=81  Identities=27%  Similarity=0.501  Sum_probs=75.3

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcC--CcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYT--DVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQM  155 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~--~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~  155 (162)
                      +|+||++||++|+.+.|.|+++++.++  ++.|+.||++.+++++++|++ .++||+++|++|+ +.++.|. +.+.|.+
T Consensus        26 lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v-~~~Pt~~~~~~G~-~~~~~G~~~~~~l~~  103 (126)
T 1x5e_A           26 MIEFYAPWCPACQNLQPEWESFAEWGEDLEVNIAKVDVTEQPGLSGRFII-NALPTIYHCKDGE-FRRYQGPRTKKDFIN  103 (126)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEETTTCHHHHHHTTC-CSSSEEEEEETTE-EEECCSCCCHHHHHH
T ss_pred             EEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECcCCHHHHHHcCC-cccCEEEEEeCCe-EEEeecCCCHHHHHH
Confidence            899999999999999999999999886  599999999999999999999 9999999999999 4778887 8999999


Q ss_pred             HHHHHh
Q 031271          156 KTEKRR  161 (162)
Q Consensus       156 ~l~~~~  161 (162)
                      +|++++
T Consensus       104 ~l~~~~  109 (126)
T 1x5e_A          104 FISDKE  109 (126)
T ss_dssp             HHHTCG
T ss_pred             HHHHHh
Confidence            998764

>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}

Probab=99.83  E-value=9.5e-20  Score=128.02  Aligned_cols=84  Identities=27%  Similarity=0.623  Sum_probs=79.4

Q ss_pred             EEEEEecCCChhhhhhhHHHHHHHHhcC-CcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHH
Q 031271           78 VVIYYTAAWCGPCKFIEPYVKDFAAMYT-DVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQM  155 (162)
Q Consensus        78 vvv~F~a~wC~~C~~~~~~l~~~~~~~~-~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~  155 (162)
                      ++|+||++||++|+.+.|.|+++++.++ ++.|+.||++.+++++++|++ .++||+++|++|+.+.++.|. +.+.|.+
T Consensus        53 vvv~f~~~~C~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~v-~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~  131 (140)
T 1v98_A           53 TLVDFFAPWCGPCRLVSPILEELARDHAGRLKVVKVNVDEHPGLAARYGV-RSVPTLVLFRRGAPVATWVGASPRRVLEE  131 (140)
T ss_dssp             EEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCHHHHHHTTC-CSSSEEEEEETTEEEEEEESCCCHHHHHH
T ss_pred             EEEEEECCCCHHHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHCCC-CccCEEEEEeCCcEEEEEeCCCCHHHHHH
Confidence            5999999999999999999999999998 499999999999999999999 999999999999999999998 8999999


Q ss_pred             HHHHHhC
Q 031271          156 KTEKRRN  162 (162)
Q Consensus       156 ~l~~~~~  162 (162)
                      +|+++++
T Consensus       132 ~i~~~l~  138 (140)
T 1v98_A          132 RLRPYLE  138 (140)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHc
Confidence            9998763

>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp}

Probab=99.83  E-value=3.2e-20  Score=126.48  Aligned_cols=99  Identities=14%  Similarity=0.105  Sum_probs=87.1

Q ss_pred             CceeEeechhhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhhhhhhHHHHH
Q 031271           20 PLVMELQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYVKD   99 (162)
Q Consensus        20 ~~v~~i~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~~~l~~   99 (162)
                      ++.+.++|.++|++.++.    ++++                                 +|+|+|+||++|+++.|.|++
T Consensus         6 ~~~~~i~s~e~f~~ii~~----~~~v---------------------------------vi~khatwCgpc~~~~~~~e~   48 (112)
T 3iv4_A            6 GVAIKLSSIDQFEQVIEE----NKYV---------------------------------FVLKHSETCPISANAYDQFNK   48 (112)
T ss_dssp             GCEEECCSHHHHHHHHHH----CSEE---------------------------------EEEEECTTCHHHHHHHHHHHH
T ss_pred             cceeecCCHHHHHHHHhc----CCCE---------------------------------EEEEECCcCHhHHHHHHHHHH
Confidence            467889999999999864    7788                                 999999999999999999999


Q ss_pred             HHHhcCCcEEEEEECCCcHH----HHHhcCCCC-CccEEEEEcCCeEEEEEcCC--CHHHHHHHH
Q 031271          100 FAAMYTDVQFIKIDVDWLPE----AAKAFDLID-VLPTFVLVKRGKEIDRVVGA--KKDELQMKT  157 (162)
Q Consensus       100 ~~~~~~~v~f~~vd~d~~~~----l~~~~~i~~-~~Ptiv~~~~Gk~i~~~~g~--~~~~l~~~l  157 (162)
                      +.+. +++.|+.||++++++    ++.+||| . ..|++++|+||+.+.+....  +.+.|.+.+
T Consensus        49 ~~~~-~~v~~~~vdVde~r~~Sn~IA~~~~V-~h~sPq~il~k~G~~v~~~SH~~I~~~~l~~~~  111 (112)
T 3iv4_A           49 FLYE-RDMDGYYLIVQQERDLSDYIAKKTNV-KHESPQAFYFVNGEMVWNRDHGDINVSSLAQAE  111 (112)
T ss_dssp             HHHH-HTCCEEEEEGGGGHHHHHHHHHHHTC-CCCSSEEEEEETTEEEEEEEGGGCSHHHHHHHT
T ss_pred             Hhcc-CCceEEEEEeecCchhhHHHHHHhCC-ccCCCeEEEEECCEEEEEeeccccCHHHHHHhh
Confidence            9986 789999999999966    7999999 8 69999999999999885433  888887664

>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}

Probab=99.82  E-value=2.4e-20  Score=127.73  Aligned_cols=82  Identities=20%  Similarity=0.389  Sum_probs=73.5

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcC-CcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcC-----CCHHH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYT-DVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVG-----AKKDE  152 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~-~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g-----~~~~~  152 (162)
                      +|+||++||++|+.+.|.++++++.++ ++.|+.||++.+++++++|++ .++||+++|++|+.+.++.|     .+.+.
T Consensus        25 lv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v-~~~Pt~~~~~~~~~~~~~~g~~~~~~~~~~  103 (122)
T 3aps_A           25 VVDFYAPWCGPCQNFAPEFELLARMIKGKVRAGKVDCQAYPQTCQKAGI-KAYPSVKLYQYERAKKSIWEEQINSRDAKT  103 (122)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTCHHHHHHTTC-CSSSEEEEEEEEGGGTEEEEEEECCSCHHH
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCcCCHHHHHHcCC-CccceEEEEeCCCccceeeccccCcCCHHH
Confidence            999999999999999999999999998 599999999999999999999 99999999965554666665     38999


Q ss_pred             HHHHHHHHh
Q 031271          153 LQMKTEKRR  161 (162)
Q Consensus       153 l~~~l~~~~  161 (162)
                      |.++|++++
T Consensus       104 l~~~l~~~l  112 (122)
T 3aps_A          104 IAALIYGKL  112 (122)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998765

>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6

Probab=99.82  E-value=2.6e-20  Score=141.17  Aligned_cols=107  Identities=23%  Similarity=0.338  Sum_probs=92.2

Q ss_pred             CCCceeEeechhhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhhhhhhHHH
Q 031271           18 KTPLVMELQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYV   97 (162)
Q Consensus        18 ~~~~v~~i~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~~~l   97 (162)
                      ..+.|..+.+.++|.+.+... ..++++                                 +|+||++||++|+.+.|.|
T Consensus        97 ~~g~v~~i~~~~~f~~~v~~~-~~~k~v---------------------------------vV~F~a~wC~~C~~l~p~l  142 (217)
T 2trc_P           97 RYGFVYELETGEQFLETIEKE-QKVTTI---------------------------------VVNIYEDGVRGCDALNSSL  142 (217)
T ss_dssp             CCCSEEECCSHHHHHHHHHHS-CTTCEE---------------------------------EEEEECTTSTTHHHHHHHH
T ss_pred             CCCeEEEcCCHHHHHHHHHhc-CCCcEE---------------------------------EEEEECCCCccHHHHHHHH
Confidence            356677777777777777542 223566                                 9999999999999999999


Q ss_pred             HHHHHhcCCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CH-------HHHHHHHHHH
Q 031271           98 KDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KK-------DELQMKTEKR  160 (162)
Q Consensus        98 ~~~~~~~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~-------~~l~~~l~~~  160 (162)
                      +++++.|+++.|+.||++ ++.++.+|+| .++||+++|++|+.+.++.|. +.       +.|+.+|.++
T Consensus       143 ~~la~~~~~v~f~~vd~~-~~~l~~~~~i-~~~PTl~~~~~G~~v~~~~G~~~~~g~~~~~~~Le~~L~~~  211 (217)
T 2trc_P          143 ECLAAEYPMVKFCKIRAS-NTGAGDRFSS-DVLPTLLVYKGGELISNFISVAEQFAEDFFAADVESFLNEY  211 (217)
T ss_dssp             HHHHTTCTTSEEEEEEHH-HHTCSTTSCG-GGCSEEEEEETTEEEEEETTGGGGSCSSCCHHHHHHHHHTT
T ss_pred             HHHHHHCCCeEEEEEECC-cHHHHHHCCC-CCCCEEEEEECCEEEEEEeCCcccCcccCCHHHHHHHHHHc
Confidence            999999999999999999 8889999999 999999999999999999998 43       8899999875

>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}

Probab=99.82  E-value=7.7e-20  Score=127.20  Aligned_cols=106  Identities=22%  Similarity=0.357  Sum_probs=94.4

Q ss_pred             EeechhhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhhhhhhHHHH--HHH
Q 031271           24 ELQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYVK--DFA  101 (162)
Q Consensus        24 ~i~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~~~l~--~~~  101 (162)
                      .+.+..++++.++.+...++++                                 +|+||++||++|+.+.|.|+  ++.
T Consensus        11 ~~~~~~~~~~~~~~~~~~~k~v---------------------------------lv~f~a~wC~~C~~~~~~l~~~~~~   57 (133)
T 3fk8_A           11 HADAWTQVKKALAAGKRTHKPT---------------------------------LLVFGANWCTDCRALDKSLRNQKNT   57 (133)
T ss_dssp             TCCHHHHHHHHHHHHHHHTCCE---------------------------------EEEEECTTCHHHHHHHHHHTSHHHH
T ss_pred             ccChHhHHHHHHHHHHhcCCcE---------------------------------EEEEcCCCCHHHHHHHHHhCCHHHH
Confidence            3457789999999888888999                                 99999999999999999999  999


Q ss_pred             HhcC-CcEEEEEEC---CCcHHHHHhcCCC--CCccEEEEE-cCCeEEEEEcC-------C-CHHHHHHHHHHHhC
Q 031271          102 AMYT-DVQFIKIDV---DWLPEAAKAFDLI--DVLPTFVLV-KRGKEIDRVVG-------A-KKDELQMKTEKRRN  162 (162)
Q Consensus       102 ~~~~-~v~f~~vd~---d~~~~l~~~~~i~--~~~Ptiv~~-~~Gk~i~~~~g-------~-~~~~l~~~l~~~~~  162 (162)
                      +.+. ++.++.||+   +.+++++++|++.  .++||+++| ++|+++.+..|       . +.+.+.++|+++.+
T Consensus        58 ~~~~~~~~~~~vd~~~~~~~~~l~~~~~v~~~~~~Pt~~~~d~~G~~~~~~~g~~~~~~~~~~~~~l~~~l~~l~e  133 (133)
T 3fk8_A           58 ALIAKHFEVVKIDVGNFDRNLELSQAYGDPIQDGIPAVVVVNSDGKVRYTTKGGELANARKMSDQGIYDFFAKITE  133 (133)
T ss_dssp             HHHHHHCEEEEEECTTTTSSHHHHHHTTCGGGGCSSEEEEECTTSCEEEECCSCTTTTGGGSCHHHHHHHHHHHHC
T ss_pred             HHhcCCEEEEEEeCCcccchHHHHHHhCCccCCccceEEEECCCCCEEEEecCCcccccccCCHHHHHHHHHHhcC
Confidence            8884 599999999   9999999999972  589999999 89999999998       4 88999999988753

>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1

Probab=99.82  E-value=2e-20  Score=129.42  Aligned_cols=83  Identities=30%  Similarity=0.625  Sum_probs=73.5

Q ss_pred             EEEEecCCCh--------------hhhhhhHHHHHHHHhcCC-cEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEE
Q 031271           79 VIYYTAAWCG--------------PCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEID  143 (162)
Q Consensus        79 vv~F~a~wC~--------------~C~~~~~~l~~~~~~~~~-v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~  143 (162)
                      +|+||++||+              +|+.+.|.++++++++++ +.|+.+|++.+++++++|+| .++||+++|++|+.+.
T Consensus        25 lv~F~a~wC~~c~~l~~~~~~~~~~C~~~~p~~~~l~~~~~~~~~~~~vd~d~~~~l~~~~~v-~~~Pt~~~~~~G~~~~  103 (123)
T 1oaz_A           25 LVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGI-RGIPTLLLFKNGEVAA  103 (123)
T ss_dssp             EEEEECSSCSCBSSSTTSCCSCCCCCCTTHHHHTTC-------CEEEEEETTSCTTTGGGGTC-CBSSEEEEEESSSEEE
T ss_pred             EEEEECCCCccccccccccccCCCCcHHHHHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCC-CccCEEEEEECCEEEE
Confidence            9999999999              999999999999999974 99999999999999999999 9999999999999999


Q ss_pred             EEcCC-CHHHHHHHHHHHhC
Q 031271          144 RVVGA-KKDELQMKTEKRRN  162 (162)
Q Consensus       144 ~~~g~-~~~~l~~~l~~~~~  162 (162)
                      ++.|. +.++|.++|+++++
T Consensus       104 ~~~G~~~~~~l~~~l~~~l~  123 (123)
T 1oaz_A          104 TKVGALSKGQLKEFLDANLA  123 (123)
T ss_dssp             EEESCCCHHHHHHHHTTTCC
T ss_pred             EEeCCCCHHHHHHHHHHHhC
Confidence            99998 89999999988753

>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=99.82  E-value=4.7e-19  Score=122.53  Aligned_cols=103  Identities=19%  Similarity=0.232  Sum_probs=92.2

Q ss_pred             cccceeEEecCCCeeeee---CceEEEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCC-----------------
Q 031271           57 CINEMVLNINDGGNVVFW---VLKVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDW-----------------  116 (162)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~---~k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~-----------------  116 (162)
                      ..|++.+.+.+|+.+..+   +|+++|+||++||++|+.+.|.++++.++++++.|+.|+++.                 
T Consensus         3 ~~p~~~l~~~~g~~~~l~~~~~k~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~   82 (136)
T 1lu4_A            3 ERLQFTATTLSGAPFDGASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAANPAVTFVGIATRADVGAMQSFVSKYNLNFT   82 (136)
T ss_dssp             GGGCCEEEBTTSCEEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCHHHHHHHHHHHTCCSE
T ss_pred             CCCCeEeecCCCCeecHHHhCCCEEEEEEECCcChhHHHHHHHHHHHHHHCCCcEEEEEEcCCCHHHHHHHHHHcCCCce
Confidence            357889999999988654   489999999999999999999999999999999999999977                 


Q ss_pred             -----cHHHHHhcCCCCCccEEEEE-cCCeEEEEEc---CC-CHHHHHHHHHHHh
Q 031271          117 -----LPEAAKAFDLIDVLPTFVLV-KRGKEIDRVV---GA-KKDELQMKTEKRR  161 (162)
Q Consensus       117 -----~~~l~~~~~i~~~~Ptiv~~-~~Gk~i~~~~---g~-~~~~l~~~l~~~~  161 (162)
                           ...+++.|++ .++|+++++ ++|+++ ++.   |. +.++|+++|++++
T Consensus        83 ~~~d~~~~~~~~~~i-~~~P~~~lid~~G~i~-~~~~~~g~~~~~~l~~~l~~ll  135 (136)
T 1lu4_A           83 NLNDADGVIWARYNV-PWQPAFVFYRADGTST-FVNNPTAAMSQDELSGRVAALT  135 (136)
T ss_dssp             EEECTTSHHHHHTTC-CSSSEEEEECTTSCEE-EECCSSSCCCHHHHHHHHHHC-
T ss_pred             EEECCchhHHHhcCC-CCCCEEEEECCCCcEE-EEEcCCCccCHHHHHHHHHHHh
Confidence                 6789999999 999999999 799999 888   87 8999999999875

>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A

Probab=99.81  E-value=3.4e-20  Score=131.87  Aligned_cols=84  Identities=12%  Similarity=0.105  Sum_probs=70.0

Q ss_pred             eEEEEEecCC--ChhhhhhhHHHHHHHHhcCCcE--EEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHH
Q 031271           77 KVVIYYTAAW--CGPCKFIEPYVKDFAAMYTDVQ--FIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKD  151 (162)
Q Consensus        77 ~vvv~F~a~w--C~~C~~~~~~l~~~~~~~~~v~--f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~  151 (162)
                      .++|+||++|  |++|+.+.|.|++++++|+++.  |++||+|++++++++|+| .++||+++|++|+.+.++.|. +.+
T Consensus        36 ~~vv~f~~~~~~C~~C~~l~P~l~~la~~~~~v~~~~~~Vd~d~~~~la~~~~V-~~iPT~~~fk~G~~v~~~~G~~~~~  114 (142)
T 2es7_A           36 DGVILLSSDPRRTPEVSDNPVMIAELLREFPQFDWQVAVADLEQSEAIGDRFNV-RRFPATLVFTDGKLRGALSGIHPWA  114 (142)
T ss_dssp             SEEEEECCCSCC----CCHHHHHHHHHHTCTTSCCEEEEECHHHHHHHHHTTTC-CSSSEEEEESCC----CEESCCCHH
T ss_pred             CEEEEEECCCCCCccHHHHHHHHHHHHHHhcccceeEEEEECCCCHHHHHhcCC-CcCCeEEEEeCCEEEEEEeCCCCHH
Confidence            3488999887  9999999999999999995588  999999999999999999 999999999999999999998 889


Q ss_pred             HHHHHHHHHh
Q 031271          152 ELQMKTEKRR  161 (162)
Q Consensus       152 ~l~~~l~~~~  161 (162)
                      .|+++|++++
T Consensus       115 ~l~~~i~~~l  124 (142)
T 2es7_A          115 ELLTLMRSIV  124 (142)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999998875

>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2

Probab=99.81  E-value=5.1e-20  Score=124.84  Aligned_cols=82  Identities=21%  Similarity=0.457  Sum_probs=76.3

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcC----CcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEE--EEEcCC-CHH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYT----DVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEI--DRVVGA-KKD  151 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~----~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i--~~~~g~-~~~  151 (162)
                      +|+||++||++|+.+.|.++++++.++    ++.|+.+|++.+++++++|++ .++||+++|++|+.+  .++.|. +.+
T Consensus        28 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v-~~~Pt~~~~~~g~~~~~~~~~g~~~~~  106 (120)
T 1mek_A           28 LVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGV-RGYPTIKFFRNGDTASPKEYTAGREAD  106 (120)
T ss_dssp             EEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTCCSSHHHHTC-CSSSEEEEEESSCSSSCEECCCCSSHH
T ss_pred             EEEEECCCCHHHHHhhHHHHHHHHHHhccCCcEEEEEEcCCCCHHHHHHCCC-CcccEEEEEeCCCcCCcccccCccCHH
Confidence            999999999999999999999999885    499999999999999999999 999999999999877  788887 899


Q ss_pred             HHHHHHHHHh
Q 031271          152 ELQMKTEKRR  161 (162)
Q Consensus       152 ~l~~~l~~~~  161 (162)
                      .|.++|++++
T Consensus       107 ~l~~~l~~~~  116 (120)
T 1mek_A          107 DIVNWLKKRT  116 (120)
T ss_dssp             HHHHHHHTTS
T ss_pred             HHHHHHHhcc
Confidence            9999999875

>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C

Probab=99.81  E-value=9.1e-20  Score=140.50  Aligned_cols=107  Identities=23%  Similarity=0.311  Sum_probs=89.9

Q ss_pred             CCCceeEeechhhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhhhhhhHHH
Q 031271           18 KTPLVMELQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYV   97 (162)
Q Consensus        18 ~~~~v~~i~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~~~l   97 (162)
                      ..+.|..+.+.++|.+.+..+ ..++++                                 ||+||++||++|+.+.|.|
T Consensus       110 ~~G~V~ei~s~~~f~~~v~~~-~~~k~V---------------------------------vV~Fya~wC~~Ck~l~p~l  155 (245)
T 1a0r_P          110 RYGFVYELESGEQFLETIEKE-QKITTI---------------------------------VVHIYEDGIKGCDALNSSL  155 (245)
T ss_dssp             CCCSEEECCSHHHHHHHHHSS-CTTCEE---------------------------------EEEEECTTSTTHHHHHHHH
T ss_pred             CCCeEEEeCCHHHHHHHHHHh-cCCCEE---------------------------------EEEEECCCChHHHHHHHHH
Confidence            356677776777777777542 235556                                 9999999999999999999


Q ss_pred             HHHHHhcCCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCCC--------HHHHHHHHHHH
Q 031271           98 KDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAK--------KDELQMKTEKR  160 (162)
Q Consensus        98 ~~~~~~~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~~--------~~~l~~~l~~~  160 (162)
                      +++++.|+++.|+.||++. +.++.+|+| .++||+++|++|+.+.++.|..        .+.|+.+|.++
T Consensus       156 ~~La~~~~~v~f~kVd~d~-~~l~~~~~I-~~~PTll~~~~G~~v~~~vG~~~~~g~~~~~e~Le~~L~~~  224 (245)
T 1a0r_P          156 ICLAAEYPMVKFCKIKASN-TGAGDRFSS-DVLPTLLVYKGGELLSNFISVTEQLAEEFFTGDVESFLNEY  224 (245)
T ss_dssp             HHHHHHCTTSEEEEEEHHH-HCCTTSSCT-TTCSEEEEEETTEEEEEETTGGGGSCTTCCHHHHHHHHHTT
T ss_pred             HHHHHHCCCCEEEEEeCCc-HHHHHHCCC-CCCCEEEEEECCEEEEEEeCCcccccccccHHHHHHHHHHc
Confidence            9999999999999999987 678899999 9999999999999999998862        35788888765

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=99.81  E-value=4.4e-19  Score=132.91  Aligned_cols=82  Identities=12%  Similarity=0.242  Sum_probs=78.3

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCC-cEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHHH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQMK  156 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~-v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~~  156 (162)
                      +|+||++||++|+.+.|.++++++.+++ +.|+.||++.+++++++|+| .++||+++|++|+.+.++.|. +.+.|.++
T Consensus       118 lv~F~a~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~~~~~~l~~~~~v-~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~  196 (210)
T 3apq_A          118 FVNFYSPGCSHCHDLAPTWREFAKEVDGLLRIGAVNCGDDRMLCRMKGV-NSYPSLFIFRSGMAAVKYNGDRSKESLVAF  196 (210)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHTBTTBEEEEEETTTCHHHHHHTTC-CSSSEEEEECTTSCCEECCSCCCHHHHHHH
T ss_pred             EEEEeCCCChhHHHHHHHHHHHHHHhcCceEEEEEECCccHHHHHHcCC-CcCCeEEEEECCCceeEecCCCCHHHHHHH
Confidence            9999999999999999999999999976 99999999999999999999 999999999999999999997 89999999


Q ss_pred             HHHHh
Q 031271          157 TEKRR  161 (162)
Q Consensus       157 l~~~~  161 (162)
                      |++++
T Consensus       197 i~~~l  201 (210)
T 3apq_A          197 AMQHV  201 (210)
T ss_dssp             HHHHH
T ss_pred             HHHhC
Confidence            98875

>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A

Probab=99.80  E-value=1.3e-18  Score=120.05  Aligned_cols=102  Identities=22%  Similarity=0.272  Sum_probs=91.2

Q ss_pred             ccceeEEecCCCeeeee---CceEEEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCC------------------
Q 031271           58 INEMVLNINDGGNVVFW---VLKVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDW------------------  116 (162)
Q Consensus        58 ~~~~~~~~~~~~~~~~~---~k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~------------------  116 (162)
                      .|++.+.+.+|+.+..+   +++++|+||++||++|+.+.|.++++.++++++.|+.|+++.                  
T Consensus         5 ~p~~~~~~~~g~~~~l~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~   84 (136)
T 1zzo_A            5 QLQFSAKTLDGHDFHGESLLGKPAVLWFWAPWCPTCQGEAPVVGQVAASHPEVTFVGVAGLDQVPAMQEFVNKYPVKTFT   84 (136)
T ss_dssp             GGCCEEEBTTSCEEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCHHHHHHHHHHTTCTTSE
T ss_pred             CCCcccccCCCCEeeHHHhCCCeEEEEEEcCCChhHHHHHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHHcCCCceE
Confidence            57889999999988654   389999999999999999999999999999999999999853                  


Q ss_pred             -----cHHHHHhcCCCCCccEEEEE-cCCeEEEEEcCC-CHHHHHHHHHHHh
Q 031271          117 -----LPEAAKAFDLIDVLPTFVLV-KRGKEIDRVVGA-KKDELQMKTEKRR  161 (162)
Q Consensus       117 -----~~~l~~~~~i~~~~Ptiv~~-~~Gk~i~~~~g~-~~~~l~~~l~~~~  161 (162)
                           ...+++.|++ .++|+++++ ++|+++ ++.|. +.+.|.++|++++
T Consensus        85 ~~~d~~~~~~~~~~i-~~~P~~~~id~~g~i~-~~~g~~~~~~l~~~l~~~l  134 (136)
T 1zzo_A           85 QLADTDGSVWANFGV-TQQPAYAFVDPHGNVD-VVRGRMSQDELTRRVTALT  134 (136)
T ss_dssp             EEECTTCHHHHHTTC-CSSSEEEEECTTCCEE-EEESCCCHHHHHHHHHHHC
T ss_pred             EEEcCCcHHHHHcCC-CCCceEEEECCCCCEE-EEecCCCHHHHHHHHHHHh
Confidence                 5678999999 999999999 799999 88898 8999999999875

>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}

Probab=99.80  E-value=3.4e-19  Score=123.22  Aligned_cols=100  Identities=24%  Similarity=0.461  Sum_probs=86.5

Q ss_pred             hhhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhhhhhhHHH---HHHHHhc
Q 031271           28 KHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYV---KDFAAMY  104 (162)
Q Consensus        28 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~~~l---~~~~~~~  104 (162)
                      ..+|++.+..+...++++                                 +|+||++||++|+.+.|.+   +++.+.+
T Consensus        13 ~~~~~~~~~~~~~~~k~v---------------------------------lv~f~a~wC~~C~~~~~~~~~~~~~~~~~   59 (130)
T 2kuc_A           13 ELSFPEALKRAEVEDKLL---------------------------------FVDCFTTWCGPCKRLSKVVFKDSLVADYF   59 (130)
T ss_dssp             CCCHHHHHHHHHHHSSCE---------------------------------EEEECCTTCTHHHHHHHHGGGCHHHHHHH
T ss_pred             cCCHHHHHHHHHhcCCeE---------------------------------EEEEECCCCccHHHHHHHhcCcHHHHHHH
Confidence            456777777665567788                                 9999999999999999998   7777665


Q ss_pred             C-CcEEEEEECC--CcHHHHHhcCCCCCccEEEEE-cCCeEEEEEcCC-CHHHHHHHHHHHh
Q 031271          105 T-DVQFIKIDVD--WLPEAAKAFDLIDVLPTFVLV-KRGKEIDRVVGA-KKDELQMKTEKRR  161 (162)
Q Consensus       105 ~-~v~f~~vd~d--~~~~l~~~~~i~~~~Ptiv~~-~~Gk~i~~~~g~-~~~~l~~~l~~~~  161 (162)
                      . ++.++.+|++  .+..++++|++ .++||++++ ++|+++.++.|. +.+.|.++|++++
T Consensus        60 ~~~~~~~~vd~~~~~~~~~~~~~~v-~~~Pt~~~~d~~G~~~~~~~G~~~~~~l~~~l~~~~  120 (130)
T 2kuc_A           60 NRHFVNLKMDMEKGEGVELRKKYGV-HAYPTLLFINSSGEVVYRLVGAEDAPELLKKVKLGV  120 (130)
T ss_dssp             HHHSEEEEECSSSTTHHHHHHHTTC-CSSCEEEEECTTSCEEEEEESCCCHHHHHHHHHHHH
T ss_pred             hcCeEEEEEecCCcchHHHHHHcCC-CCCCEEEEECCCCcEEEEecCCCCHHHHHHHHHHHH
Confidence            4 4899999998  57899999999 999999999 799999999998 8999999999875

>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1

Probab=99.80  E-value=1.1e-19  Score=124.06  Aligned_cols=78  Identities=14%  Similarity=0.214  Sum_probs=67.2

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCC------cHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDW------LPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKD  151 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~------~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~  151 (162)
                      +|+||++||++|+.+.|.|++++++++. .+..+|++.      .++++++|+| .++||+++|++|+.+.++.|. +.+
T Consensus        33 ~v~f~a~wC~~C~~~~p~l~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~i-~~~Pt~~~~~~G~~~~~~~G~~~~~  110 (118)
T 1zma_A           33 TFFIGRKTCPYCRKFAGTLSGVVAETKA-HIYFINSEEPSQLNDLQAFRSRYGI-PTVPGFVHITDGQINVRCDSSMSAQ  110 (118)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHHCC-CCEEEETTCGGGHHHHHHHHHHHTC-CSSCEEEEEETTEEEEECCTTCCHH
T ss_pred             EEEEECCCCccHHHHHHHHHHHHHhcCC-eEEEEECCCcCcHHHHHHHHHHcCC-CCCCeEEEEECCEEEEEecCCCCHH
Confidence            9999999999999999999999998853 334444443      3578899999 999999999999999999998 899


Q ss_pred             HHHHHHH
Q 031271          152 ELQMKTE  158 (162)
Q Consensus       152 ~l~~~l~  158 (162)
                      .|.++|+
T Consensus       111 ~l~~~l~  117 (118)
T 1zma_A          111 EIKDFAG  117 (118)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhh
Confidence            9999885

>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0

Probab=99.79  E-value=3.5e-18  Score=122.08  Aligned_cols=106  Identities=17%  Similarity=0.273  Sum_probs=93.8

Q ss_pred             eccccceeEEecCCCeeeeeC---ceEEEEEecCCChhhhhhhHHHHHHHHhcCC--cEEEEEECCCcHHHHHhc-----
Q 031271           55 IYCINEMVLNINDGGNVVFWV---LKVVIYYTAAWCGPCKFIEPYVKDFAAMYTD--VQFIKIDVDWLPEAAKAF-----  124 (162)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~---k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~--v~f~~vd~d~~~~l~~~~-----  124 (162)
                      ....|++.+.+.+|+.+..++   |+++|+||++||++|+.+.|.|.++.++|++  +.|+.|+++..++..++|     
T Consensus        11 g~~~p~~~l~~~~g~~~~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~l~~~~~~~~v~~v~v~~d~~~~~~~~~~~~~~   90 (165)
T 3or5_A           11 PTPAPSFSGVTVDGKPFSSASLKGKAYIVNFFATWCPPCRSEIPDMVQVQKTWASRGFTFVGIAVNEQLPNVKNYMKTQG   90 (165)
T ss_dssp             CCBCCCCEEECTTSCEEEGGGGTTCEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTTEEEEEEECSCCHHHHHHHHHHHT
T ss_pred             CCCCCCceeeCCCCCEechhHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHHHHcC
Confidence            345788999999999886654   8999999999999999999999999999975  999999999877766666     


Q ss_pred             ----------------------CCCCCccEEEEE-cCCeEEEEEcCC-CHHHHHHHHHHHh
Q 031271          125 ----------------------DLIDVLPTFVLV-KRGKEIDRVVGA-KKDELQMKTEKRR  161 (162)
Q Consensus       125 ----------------------~i~~~~Ptiv~~-~~Gk~i~~~~g~-~~~~l~~~l~~~~  161 (162)
                                            ++ ..+|+++++ ++|+++.++.|. +.+.|.++|++++
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~i-~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l  150 (165)
T 3or5_A           91 IIYPVMMATPELIRAFNGYIDGGI-TGIPTSFVIDASGNVSGVIVGPRSKADFDRIVKMAL  150 (165)
T ss_dssp             CCSCEEECCHHHHHHHHTTSTTCS-CSSSEEEEECTTSBEEEEECSCCCHHHHHHHHHHHH
T ss_pred             CCCceEecCHHHHHHHhhhhccCC-CCCCeEEEECCCCcEEEEEcCCCCHHHHHHHHHHHH
Confidence                                  89 999998888 899999999998 8999999998875

>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A

Probab=99.79  E-value=2.1e-18  Score=121.94  Aligned_cols=104  Identities=22%  Similarity=0.410  Sum_probs=92.4

Q ss_pred             cccceeEEecCCCeeeeeC---ceEEEEEecCCChhhhhhhHHHHHHHHhcCC--cEEEEEECCCc--------------
Q 031271           57 CINEMVLNINDGGNVVFWV---LKVVIYYTAAWCGPCKFIEPYVKDFAAMYTD--VQFIKIDVDWL--------------  117 (162)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~---k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~--v~f~~vd~d~~--------------  117 (162)
                      ..|++.+.+.+|+.+..++   |+++|+||++||++|+.+.|.|.++.+++++  +.|+.|+++..              
T Consensus         5 ~~p~~~l~~~~g~~~~l~~~~gk~vlv~F~~~~C~~C~~~~~~l~~~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~   84 (151)
T 2f9s_A            5 DAPNFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVN   84 (151)
T ss_dssp             ECCCCEEECTTCCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCHHHHHHHHHHHTCC
T ss_pred             cCCcceeEcCCCCEEEHHHcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHHHHcCCC
Confidence            4678999999999886654   8999999999999999999999999998864  99999998763              


Q ss_pred             --------HHHHHhcCCCCCccEEEEE-cCCeEEEEEcCC-CHHHHHHHHHHHh
Q 031271          118 --------PEAAKAFDLIDVLPTFVLV-KRGKEIDRVVGA-KKDELQMKTEKRR  161 (162)
Q Consensus       118 --------~~l~~~~~i~~~~Ptiv~~-~~Gk~i~~~~g~-~~~~l~~~l~~~~  161 (162)
                              ..+++.|++ ..+|+++++ ++|+++.++.|. +.+.|+++|++++
T Consensus        85 ~~~~~d~~~~~~~~~~v-~~~P~~~lid~~G~i~~~~~G~~~~~~l~~~l~~ll  137 (151)
T 2f9s_A           85 FPVVLDTDRQVLDAYDV-SPLPTTFLINPEGKVVKVVTGTMTESMIHDYMNLIK  137 (151)
T ss_dssp             SCEEEETTSHHHHHTTC-CSSCEEEEECTTSEEEEEEESCCCHHHHHHHHHHHS
T ss_pred             ceEEECCchHHHHhcCC-CCCCeEEEECCCCcEEEEEeCCCCHHHHHHHHHHHH
Confidence                    478999999 999998888 899999999998 8999999998875

>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}

Probab=99.79  E-value=6.7e-20  Score=132.98  Aligned_cols=102  Identities=17%  Similarity=0.263  Sum_probs=85.4

Q ss_pred             echhhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhhhhhhHHH---HHHHH
Q 031271           26 QSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYV---KDFAA  102 (162)
Q Consensus        26 ~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~~~l---~~~~~  102 (162)
                      .+..+|++.+..+...++++                                 +|+|||+||++|+.+.+.+   .++.+
T Consensus        31 ~~~~~~~~~~~~a~~~gk~v---------------------------------lv~F~A~WC~~C~~~~~~~~~~~~~~~   77 (172)
T 3f9u_A           31 AKFDDYDLGMEYARQHNKPV---------------------------------MLDFTGYGCVNCRKMELAVWTDPKVSS   77 (172)
T ss_dssp             CCBSCHHHHHHHHHHTTCCE---------------------------------EEEEECTTCHHHHHHHHHTTTSHHHHH
T ss_pred             cchhhHHHHHHHHHHcCCeE---------------------------------EEEEECCCCHHHHHHHHHhcCCHHHHH
Confidence            45678999998888888999                                 9999999999999985444   55555


Q ss_pred             hcC-CcEEEEEECCCcHHH--------------------------HHhcCCCCCccEEEEE-cCCeEEEEEcCC-C-HHH
Q 031271          103 MYT-DVQFIKIDVDWLPEA--------------------------AKAFDLIDVLPTFVLV-KRGKEIDRVVGA-K-KDE  152 (162)
Q Consensus       103 ~~~-~v~f~~vd~d~~~~l--------------------------~~~~~i~~~~Ptiv~~-~~Gk~i~~~~g~-~-~~~  152 (162)
                      .+. ++.++.||++...++                          +++|++ .++||++++ ++|+++.++.|. + .+.
T Consensus        78 ~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~Pt~~lid~~G~~~~~~~G~~~~~~~  156 (172)
T 3f9u_A           78 IINNDYVLITLYVDNKTPLTEPVKIMENGTERTLRTVGDKWSYLQRVKFGA-NAQPFYVLIDNEGNPLNKSYAYDEDISK  156 (172)
T ss_dssp             HHHHHCEEEEEETTCCCEEEEEEEEEETTEEEEEEEHHHHHHHHHHHHHSC-CCSSEEEEECTTSCBSSCCBCSCCCHHH
T ss_pred             HhcCCEEEEEEecCcccccchhhhhhhcchhhhhhhhhhhhhHHHHHHcCC-CCcceEEEECCCCCEEeeccCCCCCHHH
Confidence            554 599999999876544                          789999 999999999 899999999998 6 999


Q ss_pred             HHHHHHHHh
Q 031271          153 LQMKTEKRR  161 (162)
Q Consensus       153 l~~~l~~~~  161 (162)
                      |+++|++.+
T Consensus       157 l~~~l~~~l  165 (172)
T 3f9u_A          157 YINFLQTGL  165 (172)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999888764

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=99.78  E-value=1.3e-18  Score=131.68  Aligned_cols=81  Identities=28%  Similarity=0.573  Sum_probs=74.7

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCC----cEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTD----VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDEL  153 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~----v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l  153 (162)
                      +|+||++||++|+.+.|.|+++++.+++    +.|+.||++.+++++++|+| .++||+++|++|+.+. +.|. +.+.|
T Consensus        36 ~v~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v-~~~Pt~~~~~~g~~~~-~~g~~~~~~l  113 (241)
T 3idv_A           36 LLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATSASVLASRFDV-SGYPTIKILKKGQAVD-YEGSRTQEEI  113 (241)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHHHTSSSCCCEEEEETTTCHHHHHHTTC-CSSSEEEEEETTEEEE-CCSCSCHHHH
T ss_pred             EEEEECCCCHHHHHhhHHHHHHHHHHhhcCCceEEEEEeccCCHHHHHhcCC-CcCCEEEEEcCCCccc-ccCcccHHHH
Confidence            9999999999999999999999998753    99999999999999999999 9999999999999885 6666 99999


Q ss_pred             HHHHHHHh
Q 031271          154 QMKTEKRR  161 (162)
Q Consensus       154 ~~~l~~~~  161 (162)
                      .+++.++.
T Consensus       114 ~~~i~~~~  121 (241)
T 3idv_A          114 VAKVREVS  121 (241)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHhhcc
Confidence            99998764

>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1

Probab=99.78  E-value=3.1e-19  Score=114.45  Aligned_cols=80  Identities=23%  Similarity=0.341  Sum_probs=73.7

Q ss_pred             EEEEEecCCChhhhhhhHHHHHHHHhcC-CcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHH
Q 031271           78 VVIYYTAAWCGPCKFIEPYVKDFAAMYT-DVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQM  155 (162)
Q Consensus        78 vvv~F~a~wC~~C~~~~~~l~~~~~~~~-~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~  155 (162)
                      ++++||++||++|+.+.|.+++++++++ ++.|+.+|++++++++++|++ .++||+++  +|+.  ++.|. +.+.|.+
T Consensus         4 ~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v-~~~Pt~~~--~G~~--~~~G~~~~~~l~~   78 (85)
T 1nho_A            4 NIEVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDREKAIEYGL-MAVPAIAI--NGVV--RFVGAPSREELFE   78 (85)
T ss_dssp             CEEEESCSSSCCSTTHHHHHHHHHHHHCSSCCEEEECTTTCGGGGGGTCS-SCSSEEEE--TTTE--EEECSSCCHHHHH
T ss_pred             EEEEEECCCCcchHHHHHHHHHHHHHhcCCeEEEEEECCCCHHHHHhCCc-eeeCEEEE--CCEE--EEccCCCHHHHHH
Confidence            3899999999999999999999999998 599999999999999999999 99999988  8887  67787 8999999


Q ss_pred             HHHHHhC
Q 031271          156 KTEKRRN  162 (162)
Q Consensus       156 ~l~~~~~  162 (162)
                      +|+++++
T Consensus        79 ~l~~~le   85 (85)
T 1nho_A           79 AINDEME   85 (85)
T ss_dssp             HHHHHCC
T ss_pred             HHHHHhC
Confidence            9998764

>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}

Probab=99.78  E-value=2.1e-18  Score=122.23  Aligned_cols=106  Identities=24%  Similarity=0.224  Sum_probs=94.5

Q ss_pred             eeccccceeEEecCCCeeeeeC--ceEEEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEEC-----------------
Q 031271           54 LIYCINEMVLNINDGGNVVFWV--LKVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDV-----------------  114 (162)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~--k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~-----------------  114 (162)
                      .....|++.+.+.+|+.+..++  |+++|+||++||++|+.+.|.|.++.+++ ++.|+.|++                 
T Consensus         7 ~g~~~p~f~l~~~~g~~~~l~~~~k~vll~f~~~~C~~C~~~~~~l~~l~~~~-~v~~v~v~~d~~~~~~~~~~~~~~~~   85 (154)
T 3ia1_A            7 PGEPLPDFLLLDPKGQPVTPATVSKPAVIVFWASWCTVCKAEFPGLHRVAEET-GVPFYVISREPRDTREVVLEYMKTYP   85 (154)
T ss_dssp             SBEECCCCCEECTTSCEECTTTSCSSEEEEEECTTCHHHHHHHHHHHHHHHHH-CCCEEEEECCTTCCHHHHHHHHTTCT
T ss_pred             CCCcCCceEEECCCCCEechHHcCCeEEEEEEcccChhHHHHHHHHHHHHHHc-CCeEEEEeCCCcccHHHHHHHHHHcC
Confidence            3445788999999999885544  99999999999999999999999999999 999999999                 


Q ss_pred             ----------CCcHHHHHhcCCCCCccEEEEE-cCCeEEEEEcCC-CHHHHHHHHHHHh
Q 031271          115 ----------DWLPEAAKAFDLIDVLPTFVLV-KRGKEIDRVVGA-KKDELQMKTEKRR  161 (162)
Q Consensus       115 ----------d~~~~l~~~~~i~~~~Ptiv~~-~~Gk~i~~~~g~-~~~~l~~~l~~~~  161 (162)
                                +....+++.|++ ..+|+++++ ++|+++.++.|. +.++|+++|+++.
T Consensus        86 ~~~~~~~d~~~~~~~~~~~~~v-~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~~  143 (154)
T 3ia1_A           86 RFIPLLASDRDRPHEVAARFKV-LGQPWTFVVDREGKVVALFAGRAGREALLDALLLAG  143 (154)
T ss_dssp             TEEECBCCSSCCHHHHHTTSSB-CSSCEEEEECTTSEEEEEEESBCCHHHHHHHHHHTT
T ss_pred             CCcccccccccchHHHHHHhCC-CcccEEEEECCCCCEEEEEcCCCCHHHHHHHHHhcc
Confidence                      366788999999 999997777 899999999998 9999999999875

>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0

Probab=99.78  E-value=2.7e-18  Score=119.72  Aligned_cols=103  Identities=19%  Similarity=0.368  Sum_probs=90.8

Q ss_pred             eccccceeEEecCCCeeeee--CceEEEEEecCCChhhhhhhHHHHHHHHhcC--CcEEEEEECCC--------------
Q 031271           55 IYCINEMVLNINDGGNVVFW--VLKVVIYYTAAWCGPCKFIEPYVKDFAAMYT--DVQFIKIDVDW--------------  116 (162)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~--~k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~--~v~f~~vd~d~--------------  116 (162)
                      ....|++.+.+.+|+.+..+  .|+++|+||++||++|+.+.|.|.++.++++  ++.|+.|+++.              
T Consensus        12 g~~~p~~~l~~~~g~~~~l~~~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~   91 (145)
T 3erw_A           12 PAVPAVFLMKTIEGEDISIPNKGQKTILHFWTSWCPPCKKELPQFQSFYDAHPSDSVKLVTVNLVNSEQNQQVVEDFIKA   91 (145)
T ss_dssp             CCSCCEEEEECTTSCEEEESCTTSEEEEEEECSSCHHHHHHHHHHHHHHHHCCCSSEEEEEEECGGGSSCHHHHHHHHHH
T ss_pred             CCcCCCceeecCCCCEEeHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEccCCcCCHHHHHHHHHH
Confidence            34568899999999977554  4899999999999999999999999999998  59999998853              


Q ss_pred             -----------cHHHHHhcCCCCCccEEEEE-cCCeEEEEEcCC-CHHHHHHHHH
Q 031271          117 -----------LPEAAKAFDLIDVLPTFVLV-KRGKEIDRVVGA-KKDELQMKTE  158 (162)
Q Consensus       117 -----------~~~l~~~~~i~~~~Ptiv~~-~~Gk~i~~~~g~-~~~~l~~~l~  158 (162)
                                 ...++++|++ ..+|+++++ ++|+++.++.|. +.+.|+++|+
T Consensus        92 ~~~~~~~~~d~~~~~~~~~~v-~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~  145 (145)
T 3erw_A           92 NKLTFPIVLDSKGELMKEYHI-ITIPTSFLLNEKGEIEKTKIGPMTAEQLKEWTE  145 (145)
T ss_dssp             TTCCSCEEECSSSHHHHHTTC-CEESEEEEECTTCCEEEEEESCCCHHHHHHHHC
T ss_pred             cCCceeEEEcCchhHHHhcCc-CccCeEEEEcCCCcEEEEEcCCcCHHHHHHhhC
Confidence                       5689999999 999999999 899999999998 8999988773

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1

Probab=99.78  E-value=4.5e-19  Score=113.71  Aligned_cols=80  Identities=25%  Similarity=0.385  Sum_probs=73.7

Q ss_pred             eEEEEEecCCChhhhhhhHHHHHHHHhcC-CcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHH
Q 031271           77 KVVIYYTAAWCGPCKFIEPYVKDFAAMYT-DVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQ  154 (162)
Q Consensus        77 ~vvv~F~a~wC~~C~~~~~~l~~~~~~~~-~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~  154 (162)
                      +++++||++||++|+.+.|.+++++++++ ++.|+.+|++++++++++|++ .++||+++  +|+.  ++.|. +.++|.
T Consensus         4 ~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v-~~~Pt~~~--~G~~--~~~G~~~~~~l~   78 (85)
T 1fo5_A            4 VKIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQKAMEYGI-MAVPTIVI--NGDV--EFIGAPTKEALV   78 (85)
T ss_dssp             EEEEEEECCCSSCCCTHHHHHHHHHHHCSSSEEEEEEESSSSCCTTTSTTT-CCSSEEEE--TTEE--ECCSSSSSHHHH
T ss_pred             eEEEEEeCCCCCchHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHCCC-cccCEEEE--CCEE--eeecCCCHHHHH
Confidence            45899999999999999999999999998 599999999999999999999 99999988  8887  77888 899999


Q ss_pred             HHHHHHh
Q 031271          155 MKTEKRR  161 (162)
Q Consensus       155 ~~l~~~~  161 (162)
                      ++|++++
T Consensus        79 ~~l~~~l   85 (85)
T 1fo5_A           79 EAIKKRL   85 (85)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHhC
Confidence            9998863

>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A

Probab=99.78  E-value=1e-18  Score=120.57  Aligned_cols=102  Identities=17%  Similarity=0.314  Sum_probs=88.6

Q ss_pred             eeEeechhhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecC-------CChhhhhhh
Q 031271           22 VMELQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAA-------WCGPCKFIE   94 (162)
Q Consensus        22 v~~i~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~-------wC~~C~~~~   94 (162)
                      ...+.+.++|++.+..+  .++++                                 +|+||++       ||++|+.+.
T Consensus         6 ~v~~~~~~~~~~~~~~~--~~~~v---------------------------------~v~F~a~~~~~~~~wC~~C~~~~   50 (123)
T 1wou_A            6 EVSVSGFEEFHRAVEQH--NGKTI---------------------------------FAYFTGSKDAGGKSWCPDCVQAE   50 (123)
T ss_dssp             EEEEESHHHHHHHHHTT--TTSEE---------------------------------EEEEECCBCTTCCBSCHHHHHHH
T ss_pred             eEEeccHHHHHHHHHHh--CCCEE---------------------------------EEEEEccCCCCCCCcCHHHHHhh
Confidence            34567889999988753  36778                                 9999999       999999999


Q ss_pred             HHHHHHHHhcC-CcEEEEEEC-------CCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCCCHHHHHHHHHH
Q 031271           95 PYVKDFAAMYT-DVQFIKIDV-------DWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQMKTEK  159 (162)
Q Consensus        95 ~~l~~~~~~~~-~v~f~~vd~-------d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~~~~~l~~~l~~  159 (162)
                      |.|++++++++ ++.|+.||+       +.+++++++|+| .++||+++|++|..+....+.+++.|+++|++
T Consensus        51 p~l~~~~~~~~~~~~~~~vd~~~~~~~~d~~~~~~~~~~i-~~~Pt~~~~~~~~~~~g~~~~~~~~l~~~i~~  122 (123)
T 1wou_A           51 PVVREGLKHISEGCVFIYCQVGEKPYWKDPNNDFRKNLKV-TAVPTLLKYGTPQKLVESECLQANLVEMLFSE  122 (123)
T ss_dssp             HHHHHHGGGCCTTEEEEEEECCCHHHHHCTTCHHHHHHCC-CSSSEEEETTSSCEEEGGGGGCHHHHHHHHHC
T ss_pred             HHHHHHHHHcCCCcEEEEEECCCchhhhchhHHHHHHCCC-CeeCEEEEEcCCceEeccccCCHHHHHHHHhc
Confidence            99999999997 599999999       788899999999 99999999988877766666688899998875

>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.78  E-value=1.5e-19  Score=125.51  Aligned_cols=86  Identities=22%  Similarity=0.466  Sum_probs=74.2

Q ss_pred             CceEEEEEecCCChhhhhhhHHHHHHHHhcC---CcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEE--EEc-CC
Q 031271           75 VLKVVIYYTAAWCGPCKFIEPYVKDFAAMYT---DVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEID--RVV-GA  148 (162)
Q Consensus        75 ~k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~---~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~--~~~-g~  148 (162)
                      +++++|+||++||++|+.+.|.|+++++.++   ++.|+.||++.++.++++|+| .++||+++|++|+.+.  ++. |.
T Consensus        25 ~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v-~~~Pt~~~~~~g~~~~~~~~~gg~  103 (133)
T 2dj3_A           25 KKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATANDITNDQYKV-EGFPTIYFAPSGDKKNPIKFEGGN  103 (133)
T ss_dssp             TSEEEEEECCTTCSHHHHHHHHHHHHHHHHTTSSSEEEEEECTTTSCCCCSSCCC-SSSSEEEEECTTCTTSCEECCSSC
T ss_pred             CCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCCEEEEEecCCcCHHHHhhcCC-CcCCEEEEEeCCCcccceEecCCC
Confidence            4555999999999999999999999999985   499999999999999999999 9999999997765332  344 64


Q ss_pred             -CHHHHHHHHHHHh
Q 031271          149 -KKDELQMKTEKRR  161 (162)
Q Consensus       149 -~~~~l~~~l~~~~  161 (162)
                       +.+.|.++|++++
T Consensus       104 ~~~~~l~~~l~~~~  117 (133)
T 2dj3_A          104 RDLEHLSKFIDEHA  117 (133)
T ss_dssp             CSTTHHHHHHHHHS
T ss_pred             cCHHHHHHHHHHhc
Confidence             8999999999875

>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}

Probab=99.78  E-value=2.6e-18  Score=121.31  Aligned_cols=104  Identities=21%  Similarity=0.350  Sum_probs=92.3

Q ss_pred             ccc-ceeEEecCCCeeeeeC---ceEEEEEecCCChhhhhhhHHHHHHHHhcCC--cEEEEEECCCcH------------
Q 031271           57 CIN-EMVLNINDGGNVVFWV---LKVVIYYTAAWCGPCKFIEPYVKDFAAMYTD--VQFIKIDVDWLP------------  118 (162)
Q Consensus        57 ~~~-~~~~~~~~~~~~~~~~---k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~--v~f~~vd~d~~~------------  118 (162)
                      ..| ++.+.+.+|+.+..++   |+++|+||++||++|+.+.|.+.++.+++++  +.|+.|+.+...            
T Consensus         8 ~~p~~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~   87 (152)
T 2lja_A            8 PSAASFSYPDINGKTVSLADLKGKYIYIDVWATWCGPCRGELPALKELEEKYAGKDIHFVSLSCDKNKKAWENMVTKDQL   87 (152)
T ss_dssp             CCSSSCEEEETTTEEEESTTTTTSEEEEEECCSSCCGGGGTHHHHHHHHHHSTTSSEEEEEEECCSCHHHHHHHHHHHTC
T ss_pred             CCCcccEeecCCCCEeeHHHcCCCEEEEEEECCcCHhHHHHhHHHHHHHHHhccCCeEEEEEEccCcHHHHHHHHHhcCC
Confidence            457 8999999999886654   8999999999999999999999999999974  999999998765            


Q ss_pred             -----------HHHHhcCCCCCccEEEEE-cCCeEEEEEcCC-CHHHHHHHHHHHh
Q 031271          119 -----------EAAKAFDLIDVLPTFVLV-KRGKEIDRVVGA-KKDELQMKTEKRR  161 (162)
Q Consensus       119 -----------~l~~~~~i~~~~Ptiv~~-~~Gk~i~~~~g~-~~~~l~~~l~~~~  161 (162)
                                 ++++.|++ .++|+++++ ++|+++.+..|. +.++|+++|+++.
T Consensus        88 ~~~~~~~d~~~~~~~~~~v-~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~~  142 (152)
T 2lja_A           88 KGIQLHMGTDRTFMDAYLI-NGIPRFILLDRDGKIISANMTRPSDPKTAEKFNELL  142 (152)
T ss_dssp             CSEEEECSSCTHHHHHTTC-CSSCCEEEECTTSCEEESSCCCTTCHHHHHHHHHHH
T ss_pred             CCceeecCcchhHHHHcCc-CCCCEEEEECCCCeEEEccCCCCCHHHHHHHHHHHh
Confidence                       78999999 999999988 599999998887 8899999998875

>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A

Probab=99.77  E-value=2.1e-18  Score=120.70  Aligned_cols=105  Identities=18%  Similarity=0.252  Sum_probs=89.9

Q ss_pred             cccceeE--EecCCCeeee---eCceEEEEEecCCChhhhhhhHHHHHHHHhcCC-cEEEEEEC----------------
Q 031271           57 CINEMVL--NINDGGNVVF---WVLKVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDV----------------  114 (162)
Q Consensus        57 ~~~~~~~--~~~~~~~~~~---~~k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~-v~f~~vd~----------------  114 (162)
                      ..|++.+  .+.+|+.+..   .+++++|+||++||++|+.+.|.++++.+++++ +.|+.|++                
T Consensus         6 ~~P~f~~~~~~~~g~~~~~~~~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~   85 (148)
T 2b5x_A            6 PMPELTGEKAWLNGEVTREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSEDDLDPGKIKETA   85 (148)
T ss_dssp             BCCCCCCCSEEESCCCCHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTSEEEEEECCCSTTTSSHHHHHHHH
T ss_pred             CCCCCccccccccCcccchhhcCCCEEEEEEEcCCCHHHHHHhHHHHHHHHHhcCCcEEEEEEcCCCccccCHHHHHHHH
Confidence            3566776  6677876643   348999999999999999999999999999987 99999985                


Q ss_pred             -----------CCcHHHHHhcCCCCCccEEEEE-cCCeEEEEEcCC-CHHHHHHHHHHHhC
Q 031271          115 -----------DWLPEAAKAFDLIDVLPTFVLV-KRGKEIDRVVGA-KKDELQMKTEKRRN  162 (162)
Q Consensus       115 -----------d~~~~l~~~~~i~~~~Ptiv~~-~~Gk~i~~~~g~-~~~~l~~~l~~~~~  162 (162)
                                 +....+++.|++ .++|+++++ ++|+++.++.|. +.+.|+++|+++++
T Consensus        86 ~~~~~~~~~~~d~~~~~~~~~~v-~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l~  145 (148)
T 2b5x_A           86 AEHDITQPIFVDSDHALTDAFEN-EYVPAYYVFDKTGQLRHFQAGGSGMKMLEKRVNRVLA  145 (148)
T ss_dssp             HHTTCCSCEEECSSCHHHHHTCC-CCSSEEEEECTTCBEEEEEESCSTTHHHHHHHHHHHT
T ss_pred             HHcCCCcceEECCchhHHHHhCC-CCCCEEEEECCCCcEEEEecCCCCHHHHHHHHHHHHh
Confidence                       445689999999 999999999 899999999998 88999999988753

>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}

Probab=99.77  E-value=5.9e-18  Score=116.42  Aligned_cols=102  Identities=21%  Similarity=0.285  Sum_probs=89.4

Q ss_pred             ccceeEEecCCCeeeeeC---ceEEEEEecCCChhhhhhhHHHHHHHHhcCC-cEEEEEEC-------------------
Q 031271           58 INEMVLNINDGGNVVFWV---LKVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDV-------------------  114 (162)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~---k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~-v~f~~vd~-------------------  114 (162)
                      .|++.+.+.+|+.+..++   |+++|+||++||++|+.+.+.++++.+++++ +.++.++.                   
T Consensus         2 ~p~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~   81 (138)
T 4evm_A            2 VADFELMGVDGKTYRLSDYKGKKVYLKFWASWCSICLASLPDTDEIAKEAGDDYVVLTVVSPGHKGEQSEADFKNWYKGL   81 (138)
T ss_dssp             CCCCEEEBTTSCEEEGGGGTTSEEEEEECCTTCHHHHHHHHHHHHHHHTCTTTEEEEEEECTTSTTCCCHHHHHHHHTTC
T ss_pred             CCcceeECCCCCEEEHHHhCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCCCcEEEEEEcCCCCchhhHHHHHHHHhhc
Confidence            478899999999886654   8999999999999999999999999999874 88888843                   


Q ss_pred             ---------CCcHHHHHhcCCCCCccEEEEE-cCCeEEEEEcCC-CHHHHHHHHHHH
Q 031271          115 ---------DWLPEAAKAFDLIDVLPTFVLV-KRGKEIDRVVGA-KKDELQMKTEKR  160 (162)
Q Consensus       115 ---------d~~~~l~~~~~i~~~~Ptiv~~-~~Gk~i~~~~g~-~~~~l~~~l~~~  160 (162)
                               +....++++|++ .++|+++++ ++|+++.++.|. +.+.|.+.|++.
T Consensus        82 ~~~~~~~~~d~~~~~~~~~~v-~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~l  137 (138)
T 4evm_A           82 DYKNLPVLVDPSGKLLETYGV-RSYPTQAFIDKEGKLVKTHPGFMEKDAILQTLKEL  137 (138)
T ss_dssp             CCTTCCEEECTTCHHHHHTTC-CSSSEEEEECTTCCEEEEEESCCCHHHHHHHHHHC
T ss_pred             CCCCeeEEECcchHHHHHcCc-ccCCeEEEECCCCcEEEeecCCCcHHHHHHHHHhh
Confidence                     345578999999 999999999 899999999998 899999999874

>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}

Probab=99.77  E-value=5.5e-18  Score=120.15  Aligned_cols=103  Identities=18%  Similarity=0.257  Sum_probs=88.1

Q ss_pred             ccccceeEEecCCCeeeeeC---ceEEEEEecCCChhhhhhhHHHHHHHHhcCC--cEEEEEECCC--------------
Q 031271           56 YCINEMVLNINDGGNVVFWV---LKVVIYYTAAWCGPCKFIEPYVKDFAAMYTD--VQFIKIDVDW--------------  116 (162)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~---k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~--v~f~~vd~d~--------------  116 (162)
                      ...|++.+.+.+|+.+..++   |+++|+||++||++|+.+.|.|.++.++|++  +.++.|++|.              
T Consensus         7 ~~~p~f~l~~~~G~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~   86 (152)
T 2lrn_A            7 SVAPAITGIDLKGNSVSLNDFKGKYVLVDFWFAGCSWCRKETPYLLKTYNAFKDKGFTIYGVSTDRREEDWKKAIEEDKS   86 (152)
T ss_dssp             EECCCCEEECSSSCEEESGGGTTSEEEEEEECTTCTTHHHHHHHHHHHHHHHTTTTEEEEEEECCSCHHHHHHHHHHHTC
T ss_pred             CcCCCceeEcCCCCEEeHHHcCCCEEEEEEECCCChhHHHHHHHHHHHHHHhccCCeEEEEEEccCCHHHHHHHHHHhCC
Confidence            34688999999999887654   8999999999999999999999999999875  9999999986              


Q ss_pred             -----------cHHHHHhcCCCCCccEEEEE-cCCeEEEEEcCCCHHHHHHHHHHHh
Q 031271          117 -----------LPEAAKAFDLIDVLPTFVLV-KRGKEIDRVVGAKKDELQMKTEKRR  161 (162)
Q Consensus       117 -----------~~~l~~~~~i~~~~Ptiv~~-~~Gk~i~~~~g~~~~~l~~~l~~~~  161 (162)
                                 ...+++.|++ ..+|+++++ ++|+++.+..  +.+++++.|++++
T Consensus        87 ~~~~~~d~~~~~~~~~~~~~v-~~~P~~~lid~~G~i~~~~~--~~~~l~~~l~~l~  140 (152)
T 2lrn_A           87 YWNQVLLQKDDVKDVLESYCI-VGFPHIILVDPEGKIVAKEL--RGDDLYNTVEKFV  140 (152)
T ss_dssp             CSEEEEECHHHHHHHHHHTTC-CSSCEEEEECTTSEEEEECC--CTTHHHHHHHHHH
T ss_pred             CCeEEecccchhHHHHHHhCC-CcCCeEEEECCCCeEEEeeC--CHHHHHHHHHHHH
Confidence                       5788999999 999998888 8999998864  4566777776654

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=99.77  E-value=2.2e-18  Score=129.61  Aligned_cols=88  Identities=17%  Similarity=0.218  Sum_probs=81.1

Q ss_pred             eCceE-EEEEecCCChhhhhhhHHHHHHHHhcC-----CcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcC
Q 031271           74 WVLKV-VIYYTAAWCGPCKFIEPYVKDFAAMYT-----DVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVG  147 (162)
Q Consensus        74 ~~k~v-vv~F~a~wC~~C~~~~~~l~~~~~~~~-----~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g  147 (162)
                      .++++ +|+||++||++|+.+.|.++++++.++     ++.|+.||++.+++++++|+| .++||+++|++|+.+.++.|
T Consensus       132 ~~~~~~~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v-~~~Pt~~~~~~G~~~~~~~G  210 (226)
T 1a8l_A          132 IDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPEWADQYNV-MAVPKIVIQVNGEDRVEFEG  210 (226)
T ss_dssp             CCSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGGCHHHHHHTTC-CSSCEEEEEETTEEEEEEES
T ss_pred             cCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcccccCCcEEEEEEEcccCHHHHHhCCC-cccCeEEEEeCCceeEEEcC
Confidence            34566 999999999999999999999999986     699999999999999999999 99999999999999999999


Q ss_pred             C-CHHHHHHHHHHHhC
Q 031271          148 A-KKDELQMKTEKRRN  162 (162)
Q Consensus       148 ~-~~~~l~~~l~~~~~  162 (162)
                      . +.+.|.++|+++++
T Consensus       211 ~~~~~~l~~~l~~~l~  226 (226)
T 1a8l_A          211 AYPEKMFLEKLLSALS  226 (226)
T ss_dssp             CCCHHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHHhhC
Confidence            8 88899999998763

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}

Probab=99.77  E-value=5.4e-18  Score=133.85  Aligned_cols=107  Identities=19%  Similarity=0.340  Sum_probs=92.0

Q ss_pred             cCCCceeEeechhhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhhhhhhHH
Q 031271           17 AKTPLVMELQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPY   96 (162)
Q Consensus        17 ~~~~~v~~i~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~~~   96 (162)
                      ...+.|..++. ++|++.+.   +.++++                                 +|+|||+||++|+.+.|.
T Consensus        14 ~~~~~vv~lt~-~~f~~~i~---~~~~~v---------------------------------lV~F~A~wC~~C~~~~p~   56 (298)
T 3ed3_A           14 DSDPHISELTP-KSFDKAIH---NTNYTS---------------------------------LVEFYAPWCGHCKKLSST   56 (298)
T ss_dssp             SSCTTCEECCH-HHHHHHHT---SSSSCE---------------------------------EEEEECTTCHHHHHHHHH
T ss_pred             CCCCCeEEeCH-HHHHHHHH---hCCCeE---------------------------------EEEEECCCCHHHHHHHHH
Confidence            35677888754 88998884   346778                                 999999999999999999


Q ss_pred             HHHHHHhcCC-cEEEEEECC--CcHHHHHhcCCCCCccEEEEEcCCe-----------------EEEEEcCC-CHHHHHH
Q 031271           97 VKDFAAMYTD-VQFIKIDVD--WLPEAAKAFDLIDVLPTFVLVKRGK-----------------EIDRVVGA-KKDELQM  155 (162)
Q Consensus        97 l~~~~~~~~~-v~f~~vd~d--~~~~l~~~~~i~~~~Ptiv~~~~Gk-----------------~i~~~~g~-~~~~l~~  155 (162)
                      |+++++.+++ +.++.||+|  .+++++++|+| .++||+++|++|+                 ....+.|. +.+.|.+
T Consensus        57 ~~~la~~~~~~~~~~~v~~d~~~~~~l~~~~~I-~~~Pt~~~~~~g~~v~~~~g~~~~~~~~~~~~~~y~G~r~~~~i~~  135 (298)
T 3ed3_A           57 FRKAAKRLDGVVQVAAVNCDLNKNKALCAKYDV-NGFPTLMVFRPPKIDLSKPIDNAKKSFSAHANEVYSGARTLAPIVD  135 (298)
T ss_dssp             HHHHHHHTTTTSEEEEEETTSTTTHHHHHHTTC-CBSSEEEEEECCCC-------------CCCEEEECCSCCSHHHHHH
T ss_pred             HHHHHHHccCCcEEEEEEccCccCHHHHHhCCC-CccceEEEEECCceeecccccccccccccccceeecCCcCHHHHHH
Confidence            9999999987 999999988  78999999999 9999999999887                 35667777 8999999


Q ss_pred             HHHHHh
Q 031271          156 KTEKRR  161 (162)
Q Consensus       156 ~l~~~~  161 (162)
                      ++.+.+
T Consensus       136 fl~~~~  141 (298)
T 3ed3_A          136 FSLSRI  141 (298)
T ss_dssp             HHHTTC
T ss_pred             HHHHhc
Confidence            998764

>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*

Probab=99.77  E-value=5.5e-19  Score=121.48  Aligned_cols=85  Identities=15%  Similarity=0.131  Sum_probs=70.4

Q ss_pred             ceEEEEEecCCChhhhhhhHHHHHHHHh---cCCcEEEEEECCCc--HHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-C
Q 031271           76 LKVVIYYTAAWCGPCKFIEPYVKDFAAM---YTDVQFIKIDVDWL--PEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-K  149 (162)
Q Consensus        76 k~vvv~F~a~wC~~C~~~~~~l~~~~~~---~~~v~f~~vd~d~~--~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~  149 (162)
                      ..++|+||++||++|+.+.+.+....+.   ...+.+++||++.+  +.++.+|+| .++||+++|++|+++.|+.|+ .
T Consensus        19 ~~~LV~F~A~wC~~Ck~~~~~i~~~~~~~a~~~~~~l~~vdv~~~~~~~la~~~~V-~g~PT~i~f~~G~ev~Ri~G~~~   97 (116)
T 3dml_A           19 ELRLLMFEQPGCLYCARWDAEIAPQYPLTDEGRAAPVQRLQMRDPLPPGLELARPV-TFTPTFVLMAGDVESGRLEGYPG   97 (116)
T ss_dssp             CEEEEEEECTTCHHHHHHHHHTTTTGGGSHHHHHSCEEEEETTSCCCTTCBCSSCC-CSSSEEEEEETTEEEEEEECCCC
T ss_pred             CCEEEEEECCCCHHHHHHHHHHHhhHHHhhhcccceEEEEECCCCCchhHHHHCCC-CCCCEEEEEECCEEEeeecCCCC
Confidence            5679999999999999998755332111   11278899999876  578899999 999999999999999999999 8


Q ss_pred             HHHHHHHHHHHh
Q 031271          150 KDELQMKTEKRR  161 (162)
Q Consensus       150 ~~~l~~~l~~~~  161 (162)
                      ++.|.++|++.+
T Consensus        98 ~~~f~~~L~~~l  109 (116)
T 3dml_A           98 EDFFWPMLARLI  109 (116)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999998764

>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A*

Probab=99.77  E-value=4.1e-18  Score=125.30  Aligned_cols=82  Identities=18%  Similarity=0.255  Sum_probs=71.4

Q ss_pred             EEEEec-------CCChhhhhhhHHHHHHHHhcC-----C-cEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEE---
Q 031271           79 VIYYTA-------AWCGPCKFIEPYVKDFAAMYT-----D-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEI---  142 (162)
Q Consensus        79 vv~F~a-------~wC~~C~~~~~~l~~~~~~~~-----~-v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i---  142 (162)
                      ||+|||       .||++|+++.|.|++++++|.     + +.|++||+|++++++++||| .++||+++|++|...   
T Consensus        41 vV~F~A~~~~~~~~wCgpCk~l~P~~e~lA~~~~~~~~~~~v~f~kvD~d~~~~la~~~~I-~siPtl~~F~~g~~~~~~  119 (178)
T 3ga4_A           41 ILYITMRGTNSNGMSCQLCHDFEKTYHAVADVIRSQAPQSLNLFFTVDVNEVPQLVKDLKL-QNVPHLVVYPPAESNKQS  119 (178)
T ss_dssp             EEEEECCSBCTTSCBCHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETTTCHHHHHHTTC-CSSCEEEEECCCCGGGGG
T ss_pred             EEEEeCCCCCCCCCCChhHHHHHHHHHHHHHHhhhccCCCCEEEEEEECccCHHHHHHcCC-CCCCEEEEEcCCCCCCcc
Confidence            999999       499999999999999999885     4 99999999999999999999 999999999877422   


Q ss_pred             ---------EEE----c-CCCHHHHHHHHHHHh
Q 031271          143 ---------DRV----V-GAKKDELQMKTEKRR  161 (162)
Q Consensus       143 ---------~~~----~-g~~~~~l~~~l~~~~  161 (162)
                               .++    . |.+.+.|.+||.+.+
T Consensus       120 ~~~~~~~~~~~y~~~~~~~~~ae~la~fi~~~t  152 (178)
T 3ga4_A          120 QFEWKTSPFYQYSLVPENAENTLQFGDFLAKIL  152 (178)
T ss_dssp             GCCTTTSCCEEECCCGGGTTCHHHHHHHHHHHH
T ss_pred             ccccccCCcceeecccCCCcCHHHHHHHHHHhc
Confidence                     233    2 558999999998764

>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}

Probab=99.77  E-value=1.3e-17  Score=117.78  Aligned_cols=105  Identities=23%  Similarity=0.405  Sum_probs=91.0

Q ss_pred             eccccceeEEecCCCeeeeeC---ceEEEEEecCCChhhhhhhHHHHHHHHhcCC--cEEEEEECCCcH-----------
Q 031271           55 IYCINEMVLNINDGGNVVFWV---LKVVIYYTAAWCGPCKFIEPYVKDFAAMYTD--VQFIKIDVDWLP-----------  118 (162)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~---k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~--v~f~~vd~d~~~-----------  118 (162)
                      ....|++.+.+ +|+.+..++   |+++|+||++||++|+.+.|.|.++.++|++  +.++.|+++..+           
T Consensus         6 G~~~P~f~l~~-~g~~~~l~~~~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~   84 (152)
T 3gl3_A            6 GDKAPDFALPG-KTGVVKLSDKTGSVVYLDFWASWCGPCRQSFPWMNQMQAKYKAKGFQVVAVNLDAKTGDAMKFLAQVP   84 (152)
T ss_dssp             TSBCCCCEEEB-SSSEEEGGGGTTSEEEEEEECTTCTHHHHHHHHHHHHHHHHGGGTEEEEEEECCSSHHHHHHHHHHSC
T ss_pred             CCcCCceEeeC-CCCeEeHHHhCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEECCCCHHHHHHHHHHcC
Confidence            34568899999 888776544   8999999999999999999999999999875  899999998665           


Q ss_pred             -----------HHHHhcCCCCCccEEEEE-cCCeEEEEEcCC---CHHHHHHHHHHHh
Q 031271          119 -----------EAAKAFDLIDVLPTFVLV-KRGKEIDRVVGA---KKDELQMKTEKRR  161 (162)
Q Consensus       119 -----------~l~~~~~i~~~~Ptiv~~-~~Gk~i~~~~g~---~~~~l~~~l~~~~  161 (162)
                                 .+++.|++ ..+|+++++ ++|+++.++.|.   +.+.|+++|++++
T Consensus        85 ~~~~~~~d~~~~~~~~~~v-~~~P~~~lid~~G~i~~~~~g~~~~~~~~l~~~i~~~~  141 (152)
T 3gl3_A           85 AEFTVAFDPKGQTPRLYGV-KGMPTSFLIDRNGKVLLQHVGFRPADKEALEQQILAAL  141 (152)
T ss_dssp             CCSEEEECTTCHHHHHTTC-CSSSEEEEECTTSBEEEEEESCCTTTHHHHHHHHHHHT
T ss_pred             CCCceeECCcchhHHHcCC-CCCCeEEEECCCCCEEEEEccCCCcCHHHHHHHHHHHH
Confidence                       67889999 999998887 899999999996   4589999999875

>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}

Probab=99.77  E-value=5e-18  Score=118.91  Aligned_cols=106  Identities=21%  Similarity=0.299  Sum_probs=91.9

Q ss_pred             eeeccccceeEEecCCCeeeee-----CceEEEEEecCCChhhhhhhHHHHHHHHhc-CC--cEEEEEECCCc-------
Q 031271           53 CLIYCINEMVLNINDGGNVVFW-----VLKVVIYYTAAWCGPCKFIEPYVKDFAAMY-TD--VQFIKIDVDWL-------  117 (162)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~-----~k~vvv~F~a~wC~~C~~~~~~l~~~~~~~-~~--v~f~~vd~d~~-------  117 (162)
                      ......|++.+.+.+|+.+..+     +|+++|+||++||++|+.+.|.+.++.++| ++  +.|+.|+++..       
T Consensus         6 ~~g~~~p~~~l~~~~g~~~~l~~~~~~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~~~~~~~~   85 (148)
T 3fkf_A            6 TVGKSAPYFSLPNEKGEKLSRSAERFRNRYLLLNFWASWCDPQPEANAELKRLNKEYKKNKNFAMLGISLDIDREAWETA   85 (148)
T ss_dssp             CTTSBCCCCCEEBTTSCEECTTSTTTTTSEEEEEEECGGGCCCHHHHHHHHHHHHHTTTCTTEEEEEEECCSCHHHHHHH
T ss_pred             cCCCcCCCeEeeCCCCCEEeccccccCCcEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCCCeEEEEEECCCCHHHHHHH
Confidence            3344578899999999988666     499999999999999999999999999999 54  99999998864       


Q ss_pred             ------------------HHHHHhcCCCCCccEEEEE-cCCeEEEEEcCCCHHHHHHHHHHHh
Q 031271          118 ------------------PEAAKAFDLIDVLPTFVLV-KRGKEIDRVVGAKKDELQMKTEKRR  161 (162)
Q Consensus       118 ------------------~~l~~~~~i~~~~Ptiv~~-~~Gk~i~~~~g~~~~~l~~~l~~~~  161 (162)
                                        ..+++.|++ ..+|+++++ ++|+++.+..  +.+.|.+.|++++
T Consensus        86 ~~~~~~~~~~~~d~~~~~~~~~~~~~v-~~~P~~~lid~~G~i~~~~~--~~~~l~~~l~~ll  145 (148)
T 3fkf_A           86 IKKDTLSWDQVCDFTGLSSETAKQYAI-LTLPTNILLSPTGKILARDI--QGEALTGKLKELL  145 (148)
T ss_dssp             HHHTTCCSEEECCSCGGGCHHHHHTTC-CSSSEEEEECTTSBEEEESC--CHHHHHHHHHHHC
T ss_pred             HHHcCCCceEEEccCCcchHHHHhcCC-CCcCEEEEECCCCeEEEecC--CHHHHHHHHHHHH
Confidence                              478999999 999999988 8999998765  8888998888765

>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}

Probab=99.77  E-value=7.9e-18  Score=119.66  Aligned_cols=104  Identities=15%  Similarity=0.199  Sum_probs=87.5

Q ss_pred             cccceeEEe--cCCCeeeee---CceEEEEEecCCChhhhhh-hHHHHHHHHhcC--CcEEEEEECC-------------
Q 031271           57 CINEMVLNI--NDGGNVVFW---VLKVVIYYTAAWCGPCKFI-EPYVKDFAAMYT--DVQFIKIDVD-------------  115 (162)
Q Consensus        57 ~~~~~~~~~--~~~~~~~~~---~k~vvv~F~a~wC~~C~~~-~~~l~~~~~~~~--~v~f~~vd~d-------------  115 (162)
                      ..|++.+.+  .+|+.+..+   .|+|+|+||++||++|+.+ .|.|.++.++|+  ++.|+.|+++             
T Consensus         5 ~aP~f~l~~~~~~g~~~~l~~~~gk~vlv~f~a~wC~~C~~~~~~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~   84 (158)
T 3eyt_A            5 KAPELQIQQWFNSATDLTLADLRGKVIVIEAFQMLCPGCVMHGIPLAQKVRAAFPEDKVAVLGLHTVFEHHEAMTPISLK   84 (158)
T ss_dssp             ECCCCCEEEEESCSSCCCTGGGTTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECCCSCGGGSCHHHHH
T ss_pred             cCCCceehhhhcCCCccCHHHhCCCEEEEEEECCcCcchhhhhhHHHHHHHHHhCcCCEEEEEEEecccccccCCHHHHH
Confidence            357788877  467777554   3899999999999999996 999999999997  4999998863             


Q ss_pred             ---------------CcH-----HHHHhcCCCCCccEEEEE-cCCeEEEEEcCC-CHHHHHHHHHHHh
Q 031271          116 ---------------WLP-----EAAKAFDLIDVLPTFVLV-KRGKEIDRVVGA-KKDELQMKTEKRR  161 (162)
Q Consensus       116 ---------------~~~-----~l~~~~~i~~~~Ptiv~~-~~Gk~i~~~~g~-~~~~l~~~l~~~~  161 (162)
                                     ...     .+++.|++ .++|+++++ ++|+++.++.|. +.+.|++.|++++
T Consensus        85 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v-~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll  151 (158)
T 3eyt_A           85 AFLHEYRIKFPVGVDQPGDGAMPRTMAAYQM-RGTPSLLLIDKAGDLRAHHFGDVSELLLGAEIATLL  151 (158)
T ss_dssp             HHHHHTTCCSCEEEECCCSSSSCHHHHHTTC-CSSSEEEEECTTSEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             HHHHHcCCCceEEEcCccchhhHHHHHHcCC-CCCCEEEEECCCCCEEEEEeCCCCHHHHHHHHHHHh
Confidence                           122     58999999 999998888 899999999998 8999999998875

>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}

Probab=99.76  E-value=5.2e-18  Score=120.70  Aligned_cols=105  Identities=17%  Similarity=0.162  Sum_probs=88.5

Q ss_pred             cccceeEEe-cCCCeeeee---CceEEEEEecCCChhhhh-hhHHHHHHHHhcCC--cEEEEEECC--------------
Q 031271           57 CINEMVLNI-NDGGNVVFW---VLKVVIYYTAAWCGPCKF-IEPYVKDFAAMYTD--VQFIKIDVD--------------  115 (162)
Q Consensus        57 ~~~~~~~~~-~~~~~~~~~---~k~vvv~F~a~wC~~C~~-~~~~l~~~~~~~~~--v~f~~vd~d--------------  115 (162)
                      ..|++.+.+ .+|+.+..+   +|+|+|+||++||++|+. +.|.|+++.++|++  +.|+.|+++              
T Consensus         8 ~~p~~~~~~~~~g~~~~l~~~~gk~vlv~F~a~~C~~C~~e~~~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~   87 (160)
T 3lor_A            8 PLLELDVQEWVNHEGLSNEDLRGKVVVVEVFQMLCPGCVNHGVPQAQKIHRMIDESQVQVIGLHSVFEHHDVMTPEALKV   87 (160)
T ss_dssp             CBCCCCEEEESSSCCCCHHHHTTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECCCSCGGGSCHHHHHH
T ss_pred             cCCCcccccccCCCccCHHHhCCCEEEEEEEcCCCcchhhhhhHHHHHHHHHhCcCCcEEEEEeccccccccCCHHHHHH
Confidence            356777777 788877554   489999999999999999 69999999999975  999999862              


Q ss_pred             --------------CcHH------HHHhcCCCCCccEEEEE-cCCeEEEEEcCC-CHHHHHHHHHHHhC
Q 031271          116 --------------WLPE------AAKAFDLIDVLPTFVLV-KRGKEIDRVVGA-KKDELQMKTEKRRN  162 (162)
Q Consensus       116 --------------~~~~------l~~~~~i~~~~Ptiv~~-~~Gk~i~~~~g~-~~~~l~~~l~~~~~  162 (162)
                                    ....      +++.|++ .++|+++++ ++|+++.++.|. +.+.|++.|+++++
T Consensus        88 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~v-~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~  155 (160)
T 3lor_A           88 FIDEFGIKFPVAVDMPREGQRIPSTMKKYRL-EGTPSIILADRKGRIRQVQFGQVDDFVLGLLLGSLLS  155 (160)
T ss_dssp             HHHHTTCCSCEEEECCCTTCSSCHHHHHTTC-CSSSEEEEECTTSBEEEEEESCCCHHHHHHHHHHHHT
T ss_pred             HHHHcCCCCcEEECCccccchhhhHHHhccc-CccceEEEECCCCcEEEEecCcCCHHHHHHHHHHHHh
Confidence                          2333      8999999 999998888 799999999998 89999999988763

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}

Probab=99.76  E-value=6.3e-18  Score=129.18  Aligned_cols=81  Identities=20%  Similarity=0.379  Sum_probs=72.3

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcC----CcEEEEEEC--CCcHHHHHhcCCCCCccEEEEEcC------CeEEEEEc
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYT----DVQFIKIDV--DWLPEAAKAFDLIDVLPTFVLVKR------GKEIDRVV  146 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~----~v~f~~vd~--d~~~~l~~~~~i~~~~Ptiv~~~~------Gk~i~~~~  146 (162)
                      +|+||++||++|+.+.|.|++++++++    ++.|+.||+  +.+++++++|+| .++||+++|++      |..+ ++.
T Consensus        34 lv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~~~~~~l~~~~~v-~~~Pt~~~~~~g~~~~~g~~~-~~~  111 (244)
T 3q6o_A           34 AVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEETNSAVCRDFNI-PGFPTVRFFXAFTXNGSGAVF-PVA  111 (244)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHTGGGTTTEEEEEEETTSTTTHHHHHHTTC-CSSSEEEEECTTCCSSSCEEC-CCT
T ss_pred             EEEEECCcCHHHHHHHHHHHHHHHHHHhccCcEEEEEEeCCchhhHHHHHHcCC-CccCEEEEEeCCCcCCCCeeE-ecC
Confidence            999999999999999999999999986    499999999  678999999999 99999999986      3444 666


Q ss_pred             CCCHHHHHHHHHHHh
Q 031271          147 GAKKDELQMKTEKRR  161 (162)
Q Consensus       147 g~~~~~l~~~l~~~~  161 (162)
                      |.+.+.|.++|.+++
T Consensus       112 g~~~~~l~~~i~~~l  126 (244)
T 3q6o_A          112 GADVQTLRERLIDAL  126 (244)
T ss_dssp             TCCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHH
Confidence            778999999998764

>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}

Probab=99.76  E-value=1.2e-17  Score=118.23  Aligned_cols=95  Identities=19%  Similarity=0.328  Sum_probs=82.0

Q ss_pred             cCCCeeeee---CceEEEEEecCCChhhhhhhHHHHHHHHhcC--CcEEEEEECCC------------------------
Q 031271           66 NDGGNVVFW---VLKVVIYYTAAWCGPCKFIEPYVKDFAAMYT--DVQFIKIDVDW------------------------  116 (162)
Q Consensus        66 ~~~~~~~~~---~k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~--~v~f~~vd~d~------------------------  116 (162)
                      .+|+.+..+   +|+|+|+||++||++|+.+.|.|.++.++|.  ++.++.|++|.                        
T Consensus        12 ~~G~~~~l~~~~gk~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~   91 (151)
T 3raz_A           12 KDNTPQSLQSLKAPVRIVNLWATWCGPCRKEMPAMSKWYKAQKKGSVDMVGIALDTSDNIGNFLKQTPVSYPIWRYTGAN   91 (151)
T ss_dssp             TTCCEECGGGCCSSEEEEEEECTTCHHHHHHHHHHHHHHHTSCTTTEEEEEEESSCHHHHHHHHHHSCCSSCEEEECCSC
T ss_pred             cCCCEecHHHhCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccCCeEEEEEECCChHHHHHHHHHcCCCCceEecCccc
Confidence            677777554   3899999999999999999999999999985  49999999873                        


Q ss_pred             cHHHHHhcC--CCCCccEEEEE-cCCeEEEEEcCC-CHHHHHHHHHHHh
Q 031271          117 LPEAAKAFD--LIDVLPTFVLV-KRGKEIDRVVGA-KKDELQMKTEKRR  161 (162)
Q Consensus       117 ~~~l~~~~~--i~~~~Ptiv~~-~~Gk~i~~~~g~-~~~~l~~~l~~~~  161 (162)
                      ...+++.|+  + ..+|+++++ ++|+++.++.|. +.++|+++|++..
T Consensus        92 ~~~~~~~~~~~v-~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~l~  139 (151)
T 3raz_A           92 SRNFMKTYGNTV-GVLPFTVVEAPKCGYRQTITGEVNEKSLTDAVKLAH  139 (151)
T ss_dssp             HHHHHHTTTCCS-CCSSEEEEEETTTTEEEECCSCCCHHHHHHHHHHHH
T ss_pred             hHHHHHHhCCcc-CCCCEEEEECCCCcEEEEECCCCCHHHHHHHHHHHH
Confidence            345778899  9 999988877 899999999998 8999999998765

>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}

Probab=99.62  E-value=4.6e-20  Score=122.34  Aligned_cols=85  Identities=35%  Similarity=0.778  Sum_probs=78.0

Q ss_pred             ceEEEEEecCCChhhhhhhHHHHHHHHhcC-CcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHH
Q 031271           76 LKVVIYYTAAWCGPCKFIEPYVKDFAAMYT-DVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDEL  153 (162)
Q Consensus        76 k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~-~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l  153 (162)
                      ++++|+||++||++|+.+.|.++++++.++ ++.|+.+|++.+++++++|++ .++|++++|++|+.+.++.|. +.+.|
T Consensus        20 ~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v-~~~Pt~~~~~~g~~~~~~~g~~~~~~l   98 (106)
T 2yj7_A           20 KPVLVDFWAPWCGPCRMIAPIIEELAKEYEGKVKVVKVNVDENPNTAAQYGI-RSIPTLLLFKNGQVVDRLVGAQPKEAL   98 (106)
Confidence            444999999999999999999999999997 499999999999999999999 999999999999999999888 78999


Q ss_pred             HHHHHHHh
Q 031271          154 QMKTEKRR  161 (162)
Q Consensus       154 ~~~l~~~~  161 (162)
                      .++|++++
T Consensus        99 ~~~l~~~l  106 (106)
T 2yj7_A           99 KERIDKHL  106 (106)
Confidence            99988753

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A

Probab=99.76  E-value=5.1e-18  Score=141.01  Aligned_cols=82  Identities=21%  Similarity=0.402  Sum_probs=78.7

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCC-cEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHHH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQMK  156 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~-v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~~  156 (162)
                      +|+||++||++|+++.|.|+++++.+++ +.|+.||++.++.++++|+| .++||+++|++|+.+.++.|. +.+.|.++
T Consensus        25 lv~F~a~wC~~C~~~~p~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~v-~~~Ptl~~~~~g~~~~~~~G~~~~~~l~~~  103 (481)
T 3f8u_A           25 LVEFFAPWCGHAKRLAPEYEAAATRLKGIVPLAKVDCTANTNTCNKYGV-SGYPTLKIFRDGEEAGAYDGPRTADGIVSH  103 (481)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHTTTTCCEEEEETTTCHHHHHHTTC-CEESEEEEEETTEEEEECCSCSSHHHHHHH
T ss_pred             EEEEECCCCHHHHHhHHHHHHHHHHhcCceEEEEEECCCCHHHHHhcCC-CCCCEEEEEeCCceeeeecCccCHHHHHHH
Confidence            9999999999999999999999999987 99999999999999999999 999999999999989999998 89999999


Q ss_pred             HHHHh
Q 031271          157 TEKRR  161 (162)
Q Consensus       157 l~~~~  161 (162)
                      +.+++
T Consensus       104 ~~~~~  108 (481)
T 3f8u_A          104 LKKQA  108 (481)
T ss_dssp             HHHHT
T ss_pred             HHhhc
Confidence            98865

>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}

Probab=99.76  E-value=8.5e-18  Score=117.89  Aligned_cols=101  Identities=12%  Similarity=0.200  Sum_probs=85.8

Q ss_pred             ccccceeEEecCCCeeeeeC---ceEEEEEecCCChhhhhhhHHHHH---HHHhcC--CcEEEEEECCCcHH--------
Q 031271           56 YCINEMVLNINDGGNVVFWV---LKVVIYYTAAWCGPCKFIEPYVKD---FAAMYT--DVQFIKIDVDWLPE--------  119 (162)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~---k~vvv~F~a~wC~~C~~~~~~l~~---~~~~~~--~v~f~~vd~d~~~~--------  119 (162)
                      ...|++.+.+.+|+.+..++   |+|+|+||++||++|+.+.|.|.+   +.++|+  ++.++.|+.|...+        
T Consensus         9 ~~ap~f~l~~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~~~~l~~~~~~~~~~vi~i~~d~~~~~~~~~~~~   88 (142)
T 3eur_A            9 TKALNFTYTLDSGVKGTLYQFPAEYTLLFINNPGCHACAEMIEGLKASPVINGFTAAKKLKVLSIYPDEELDEWKKHRND   88 (142)
T ss_dssp             SBCCCCEEEETTSCEEETTTCCCSEEEEEECCSSSHHHHHHHHHHHHCHHHHHHHHTTSEEEEEEECSSCHHHHHHHGGG
T ss_pred             CccCCcEEEcCCCCEeeHHHcCCCEEEEEEECCCCccHHHHHHHHhhhHHHHHHhccCCeEEEEEEcCCCHHHHHHHHHh
Confidence            45688999999999886655   999999999999999999999999   888884  59999999987643        


Q ss_pred             ----------------HHHhcCCCCCccEEEEE-cCCeEEEEEcCCCHHHHHHHHHH
Q 031271          120 ----------------AAKAFDLIDVLPTFVLV-KRGKEIDRVVGAKKDELQMKTEK  159 (162)
Q Consensus       120 ----------------l~~~~~i~~~~Ptiv~~-~~Gk~i~~~~g~~~~~l~~~l~~  159 (162)
                                      +++.|++ .++|+++++ ++|+++.+..+  .++|+++|++
T Consensus        89 ~~~~~~~~~d~~~~~~~~~~~~v-~~~P~~~lid~~G~i~~~~~~--~~~l~~~l~e  142 (142)
T 3eur_A           89 FAKEWTNGYDKELVIKNKNLYDL-RAIPTLYLLDKNKTVLLKDAT--LQKVEQYLAE  142 (142)
T ss_dssp             SCTTSEEEECTTCHHHHTTCSCC-TTCSEEEEECTTCBEEEEEEC--HHHHHHHHHC
T ss_pred             cccccccccCccchhhhhhhcCC-CcCCeEEEECCCCcEEecCCC--HHHHHHHHhC
Confidence                            4778999 999998888 89999988764  6888888764

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}

Probab=99.76  E-value=5.3e-18  Score=137.68  Aligned_cols=82  Identities=20%  Similarity=0.465  Sum_probs=75.8

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcC------C-cEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEE-EcCC-C
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYT------D-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDR-VVGA-K  149 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~------~-v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~-~~g~-~  149 (162)
                      +|+|||+||++|+++.|.|+++++.+.      + +.|+.||++.+++++++|+| .++||+++|++|+.+.+ +.|. +
T Consensus        26 lV~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~v~~~~Vd~~~~~~l~~~~~v-~~~Pt~~~f~~G~~~~~~~~G~~~  104 (382)
T 2r2j_A           26 LVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCDQHSDIAQRYRI-SKYPTLKLFRNGMMMKREYRGQRS  104 (382)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHHTTCC---CCEEEEEEETTTCHHHHHHTTC-CEESEEEEEETTEEEEEECCSCCS
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEECCccHHHHHhcCC-CcCCEEEEEeCCcEeeeeecCcch
Confidence            999999999999999999999998872      3 99999999999999999999 99999999999998874 7787 8


Q ss_pred             HHHHHHHHHHHh
Q 031271          150 KDELQMKTEKRR  161 (162)
Q Consensus       150 ~~~l~~~l~~~~  161 (162)
                      .+.|.+++.+++
T Consensus       105 ~~~l~~~i~~~~  116 (382)
T 2r2j_A          105 VKALADYIRQQK  116 (382)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc
Confidence            999999998865

>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A

Probab=99.76  E-value=9e-19  Score=119.49  Aligned_cols=82  Identities=24%  Similarity=0.459  Sum_probs=70.9

Q ss_pred             ceEEEEEecCCChhhhhhhHHHHHHHHhcC------CcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeE--EEEEcC
Q 031271           76 LKVVIYYTAAWCGPCKFIEPYVKDFAAMYT------DVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKE--IDRVVG  147 (162)
Q Consensus        76 k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~------~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~--i~~~~g  147 (162)
                      ++++|+||++||++|+.+.|.|+++++.++      ++.|+.+|++.++ +++  ++ .++||+++|++|..  +.++.|
T Consensus        26 ~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~vd~~~~~-~~~--~v-~~~Pt~~~~~~~~~~~~~~~~G  101 (121)
T 2djj_A           26 KDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATAND-VPD--EI-QGFPTIKLYPAGAKGQPVTYSG  101 (121)
T ss_dssp             SCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTTSC-CSS--CC-SSSSEEEEECSSCTTSCCCCCC
T ss_pred             CCEEEEEECCCCHhHHHhhHHHHHHHHHHhhcccCCceEEEEEECcccc-ccc--cc-CcCCeEEEEeCcCCCCceEecC
Confidence            344999999999999999999999999986      4999999999875 444  99 99999999977643  677788


Q ss_pred             C-CHHHHHHHHHHHh
Q 031271          148 A-KKDELQMKTEKRR  161 (162)
Q Consensus       148 ~-~~~~l~~~l~~~~  161 (162)
                      . +.+.|.++|++++
T Consensus       102 ~~~~~~l~~~i~~~~  116 (121)
T 2djj_A          102 SRTVEDLIKFIAENG  116 (121)
T ss_dssp             CSCHHHHHHHHHHTS
T ss_pred             CCCHHHHHHHHHhcc
Confidence            7 8999999999875

>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}

Probab=99.75  E-value=3.9e-18  Score=119.47  Aligned_cols=105  Identities=15%  Similarity=0.278  Sum_probs=90.4

Q ss_pred             eccccceeEEecCCCeeeee---CceEEEEEecCCChhhhhhhHHHHHHHHhcCC--cEEEEEECCCcHH----------
Q 031271           55 IYCINEMVLNINDGGNVVFW---VLKVVIYYTAAWCGPCKFIEPYVKDFAAMYTD--VQFIKIDVDWLPE----------  119 (162)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~---~k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~--v~f~~vd~d~~~~----------  119 (162)
                      ....|++.+.+.+|+.+..+   +|+++|+||++||++|+.+.|.+.++.++|++  +.|+.|+++..++          
T Consensus         8 G~~~p~~~l~~~~g~~~~l~~~~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~   87 (148)
T 3hcz_A            8 GKKAPNLYMTDTTGTYRYLYDVQAKYTILFFWDSQCGHCQQETPKLYDWWLKNRAKGIQVYAANIERKDEEWLKFIRSKK   87 (148)
T ss_dssp             TSBCCCCCCBCTTSCBCCGGGCCCSEEEEEEECGGGCTTCSHHHHHHHHHHHHGGGTEEEEEEECCSSSHHHHHHHHHHT
T ss_pred             CCcCCceEEecCCCCEEEhHHcCCCEEEEEEECCCCccHHHHHHHHHHHHHHhccCCEEEEEEEecCCHHHHHHHHHHcC
Confidence            34568899999999977654   48999999999999999999999999999875  9999999997766          


Q ss_pred             ---------------HHHhcCCCCCccEEEEE-cCCeEEEEEcCC-CHHHHHHHHHHH
Q 031271          120 ---------------AAKAFDLIDVLPTFVLV-KRGKEIDRVVGA-KKDELQMKTEKR  160 (162)
Q Consensus       120 ---------------l~~~~~i~~~~Ptiv~~-~~Gk~i~~~~g~-~~~~l~~~l~~~  160 (162)
                                     +++.|++ ..+|+++++ ++|+++.+..|. +.+.+.+.+.+.
T Consensus        88 ~~~~~~~~d~~~~~~~~~~~~i-~~~P~~~lid~~G~i~~~~~g~~~~~~~l~~l~~~  144 (148)
T 3hcz_A           88 IGGWLNVRDSKNHTDFKITYDI-YATPVLYVLDKNKVIIAKRIGYENLDDFLVQYEKS  144 (148)
T ss_dssp             CTTSEEEECTTCCCCHHHHHCC-CSSCEEEEECTTCBEEEESCCGGGHHHHHHHHHHH
T ss_pred             CCCceEEeccccchhHHHhcCc-CCCCEEEEECCCCcEEEecCCHHHHHHHHHHHHHH
Confidence                           9999999 999999999 899999999888 666666666554

>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A

Probab=99.75  E-value=2.2e-18  Score=125.62  Aligned_cols=82  Identities=9%  Similarity=0.136  Sum_probs=69.6

Q ss_pred             ceEEEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHHHHHhcC---CCCCccEEEEEcC-CeEEEEEcCCCHH
Q 031271           76 LKVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFD---LIDVLPTFVLVKR-GKEIDRVVGAKKD  151 (162)
Q Consensus        76 k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~l~~~~~---i~~~~Ptiv~~~~-Gk~i~~~~g~~~~  151 (162)
                      ++++|+|||+||++|+.+.|.|+++++.++++.|+.||+|++++++++|+   + .++||++++++ |+++.++.+ .+.
T Consensus        55 k~vvv~F~A~WC~pC~~~~P~l~~l~~~~~~v~~~~v~~d~~~~~~~~~~~~~v-~~iPt~i~~~~~G~~~~~~g~-~p~  132 (167)
T 1z6n_A           55 RYRLLVAGEMWCPDCQINLAALDFAQRLQPNIELAIISKGRAEDDLRQRLALER-IAIPLVLVLDEEFNLLGRFVE-RPQ  132 (167)
T ss_dssp             CEEEEEECCTTCHHHHHHHHHHHHHHHHCTTEEEEEECHHHHHHHTTTTTTCSS-CCSSEEEEECTTCCEEEEEES-SCH
T ss_pred             CEEEEEEECCCChhHHHHHHHHHHHHHHCCCcEEEEEECCCCHHHHHHHHHcCC-CCcCeEEEECCCCCEEEEEcC-CCH
Confidence            44599999999999999999999999999899999999999999999997   9 99999999965 688887744 444


Q ss_pred             HHHHHHHH
Q 031271          152 ELQMKTEK  159 (162)
Q Consensus       152 ~l~~~l~~  159 (162)
                      .+.+.+.+
T Consensus       133 ~~~~~i~~  140 (167)
T 1z6n_A          133 AVLDGGPQ  140 (167)
T ss_dssp             HHHHHCHH
T ss_pred             HHHHhHHH
Confidence            45555443

>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}

Probab=99.75  E-value=2.4e-17  Score=117.66  Aligned_cols=105  Identities=17%  Similarity=0.298  Sum_probs=90.3

Q ss_pred             eeccccceeEEecCCCeeeeeC---ceEEEEEecCCChhhhhhhHHHHHHHHhcC--CcEEEEEECCC------------
Q 031271           54 LIYCINEMVLNINDGGNVVFWV---LKVVIYYTAAWCGPCKFIEPYVKDFAAMYT--DVQFIKIDVDW------------  116 (162)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~---k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~--~v~f~~vd~d~------------  116 (162)
                      .....|++.+.+.+|+.+..++   |+++|+||++||++|+.+.|.|.++.++++  ++.|+.|+.+.            
T Consensus        17 ~G~~~p~f~l~~~~g~~~~l~~~~gk~vll~F~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~   96 (158)
T 3hdc_A           17 TGALAPNFKLPTLSGENKSLAQYRGKIVLVNFWASWCPYCRDEMPSMDRLVKSFPKGDLVVLAVNVEKRFPEKYRRAPVS   96 (158)
T ss_dssp             TTSBCCCCEEECTTSCEEESGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHSSTTSEEEEEEECSSSCCGGGGGCCCS
T ss_pred             CCCcCCCceeEcCCCCEEehHHhCCCEEEEEEECCcCHHHHHHHHHHHHHHHHcccCCeEEEEEeCCHHHHHHHHHcCCC
Confidence            3445788999999999886654   899999999999999999999999999997  59999999987            


Q ss_pred             -------cHHHHHhcCCCCCccEEEEE-cCCeEEEEEcCC---CHHHHHHHHHH
Q 031271          117 -------LPEAAKAFDLIDVLPTFVLV-KRGKEIDRVVGA---KKDELQMKTEK  159 (162)
Q Consensus       117 -------~~~l~~~~~i~~~~Ptiv~~-~~Gk~i~~~~g~---~~~~l~~~l~~  159 (162)
                             ..++++.|++ ..+|+++++ ++|+++.++.|.   +.+++++.+++
T Consensus        97 ~~~~~d~~~~~~~~~~v-~~~P~~~lid~~G~i~~~~~G~~~~~~~~~~~~~~~  149 (158)
T 3hdc_A           97 FNFLSDATGQVQQRYGA-NRLPDTFIVDRKGIIRQRVTGGIEWDAPKVVSYLKS  149 (158)
T ss_dssp             CEEEECTTSHHHHHTTC-CSSSEEEEECTTSBEEEEEESCCCTTSHHHHHHHHT
T ss_pred             ceEEECchHHHHHHhCC-CCcceEEEEcCCCCEEEEEeCCCccchHHHHHHHHh
Confidence                   6789999999 999997777 899999999998   45666666654

>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}

Probab=99.75  E-value=9.2e-18  Score=120.14  Aligned_cols=81  Identities=17%  Similarity=0.439  Sum_probs=71.7

Q ss_pred             EEEEe-cCCChhhhhhhHHH---HHHHHhc-CCcEEEEEECCCcH-----------HHHHhcCCCCCccEEEEE-cCCeE
Q 031271           79 VIYYT-AAWCGPCKFIEPYV---KDFAAMY-TDVQFIKIDVDWLP-----------EAAKAFDLIDVLPTFVLV-KRGKE  141 (162)
Q Consensus        79 vv~F~-a~wC~~C~~~~~~l---~~~~~~~-~~v~f~~vd~d~~~-----------~l~~~~~i~~~~Ptiv~~-~~Gk~  141 (162)
                      +|+|| ++||++|+.+.|.+   .++.+.+ .++.++.+|.+..+           +++++|++ .++||++++ ++|++
T Consensus        51 lv~F~ga~wC~~C~~~~p~l~~~~~~~~~~~~~~~~v~vd~~~~~~~~~~~~~~~~~l~~~~~v-~~~Pt~~~~d~~G~~  129 (154)
T 2ju5_A           51 GLFFTGSDWCMWCIKMQDQILQSSEFKHFAGVHLHMVEVDFPQKNHQPEEQRQKNQELKAQYKV-TGFPELVFIDAEGKQ  129 (154)
T ss_dssp             EEEEECTTTCHHHHHHHHHTTTSHHHHHHHHHHCEEEEEECCSSCCCCHHHHHHHHHHHHHTTC-CSSSEEEEECTTCCE
T ss_pred             EEEEeCCCCCHhHHHHHHHHhcCHHHHHHhcCcEEEEEecCccccCCChhhHhhHHHHHHHcCC-CCCCEEEEEcCCCCE
Confidence            99999 99999999999999   7776665 35999999998753           89999999 999999999 89999


Q ss_pred             EEEEcCC---CHHHHHHHHHHHh
Q 031271          142 IDRVVGA---KKDELQMKTEKRR  161 (162)
Q Consensus       142 i~~~~g~---~~~~l~~~l~~~~  161 (162)
                      +.+. |.   +.+.|.++|++++
T Consensus       130 ~~~~-G~~~~~~~~l~~~l~~~l  151 (154)
T 2ju5_A          130 LARM-GFEPGGGAAYVSKVKSAL  151 (154)
T ss_dssp             EEEE-CCCTTCHHHHHHHHHHHH
T ss_pred             EEEe-cCCCCCHHHHHHHHHHHH
Confidence            9999 87   4888999998875

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=99.74  E-value=2.1e-17  Score=125.04  Aligned_cols=90  Identities=24%  Similarity=0.414  Sum_probs=80.1

Q ss_pred             eeeeeCceEEEEEecCCChhhhhhhHHHHHHHHhcC----CcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEE
Q 031271           70 NVVFWVLKVVIYYTAAWCGPCKFIEPYVKDFAAMYT----DVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRV  145 (162)
Q Consensus        70 ~~~~~~k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~----~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~  145 (162)
                      .+...+++++|+||++||++|+.+.|.++++++.+.    ++.|+.||++.+++++++|+| .++||+++|++|+.+. +
T Consensus       142 ~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~v-~~~Pt~~~~~~g~~~~-~  219 (241)
T 3idv_A          142 EVVNDADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATAETDLAKRFDV-SGYPTLKIFRKGRPYD-Y  219 (241)
T ss_dssp             HHHHHCSEEEEEEECTTCTGGGGTHHHHHHHHHHHHTSSSCCCEEEEETTTCHHHHHHTTC-CSSSEEEEEETTEEEE-C
T ss_pred             HhhccCCeEEEEEECCCCHHHHHhHHHHHHHHHHHhccCCcEEEEEEECCCCHHHHHHcCC-cccCEEEEEECCeEEE-e
Confidence            334455778999999999999999999999998763    399999999999999999999 9999999999999887 6


Q ss_pred             cCC-CHHHHHHHHHHHh
Q 031271          146 VGA-KKDELQMKTEKRR  161 (162)
Q Consensus       146 ~g~-~~~~l~~~l~~~~  161 (162)
                      .|. +.+.|.++|.++.
T Consensus       220 ~g~~~~~~l~~~l~~~~  236 (241)
T 3idv_A          220 NGPREKYGIVDYMIEQS  236 (241)
T ss_dssp             CSCCSHHHHHHHHHHHT
T ss_pred             cCCCCHHHHHHHHHhhh
Confidence            676 8999999999875

>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}

Probab=99.74  E-value=1.1e-17  Score=117.00  Aligned_cols=102  Identities=17%  Similarity=0.250  Sum_probs=84.8

Q ss_pred             cccceeEEecCCCeeeeeC---ceEEEEEecCCChhhhhhhHHHHH---HHHhcC--CcEEEEEECCCcHHH--------
Q 031271           57 CINEMVLNINDGGNVVFWV---LKVVIYYTAAWCGPCKFIEPYVKD---FAAMYT--DVQFIKIDVDWLPEA--------  120 (162)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~---k~vvv~F~a~wC~~C~~~~~~l~~---~~~~~~--~v~f~~vd~d~~~~l--------  120 (162)
                      ..|++.+.+.+|+.+..++   |+|+|+||++||++|+.+.|.+.+   +.+.|+  ++.++.|++|..++.        
T Consensus         6 ~~p~f~l~~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~~~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~   85 (142)
T 3ewl_A            6 KAADFTYVTVHGDNSRMSRLKAQYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENGTLRVLAIYPDENREEWATKAVYM   85 (142)
T ss_dssp             BCCCCEEECTTCCEEEGGGCCCSEEEEEECCSSCHHHHHHHHHHHTCHHHHHHHHHTSEEEEEEECSSCHHHHHHHHTTS
T ss_pred             cCCCCEEECCCCCEEEhhhcCCCEEEEEEECCCCccHHHHHHHHHHhHHHHHHhccCCeEEEEEEecCCHHHHHHHHHHc
Confidence            4688999999999886654   999999999999999999999888   777774  499999999866544        


Q ss_pred             ----------------HHhcCCCCCccEEEEE-cCCeEEEEEcCCCHHHHHHHHHHHh
Q 031271          121 ----------------AKAFDLIDVLPTFVLV-KRGKEIDRVVGAKKDELQMKTEKRR  161 (162)
Q Consensus       121 ----------------~~~~~i~~~~Ptiv~~-~~Gk~i~~~~g~~~~~l~~~l~~~~  161 (162)
                                      ++.|++ ..+|+++++ ++|+++.  .+.+.++|+++|+++.
T Consensus        86 ~~~~~~~~d~~~~~~~~~~~~v-~~~P~~~lid~~G~i~~--~~~~~~~l~~~l~~~~  140 (142)
T 3ewl_A           86 PQGWIVGWNKAGDIRTRQLYDI-RATPTIYLLDGRKRVIL--KDTSMEQLIDYLATQA  140 (142)
T ss_dssp             CTTCEEEECTTCHHHHTTCSCC-CSSSEEEEECTTCBEEE--CSCCHHHHHHHHHC--
T ss_pred             CCCcceeeCCccchhhHHHcCC-CCCCeEEEECCCCCEEe--cCCCHHHHHHHHHHHc
Confidence                            348999 999998888 7999886  3458999999998764

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A

Probab=99.74  E-value=2.3e-17  Score=137.97  Aligned_cols=105  Identities=18%  Similarity=0.326  Sum_probs=92.4

Q ss_pred             CCCceeEeechhhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhhhhhhHHH
Q 031271           18 KTPLVMELQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYV   97 (162)
Q Consensus        18 ~~~~v~~i~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~~~l   97 (162)
                      ..+.|..++ .++|++.+.    +++++                                 +|+||++||++|+.+.|.|
T Consensus        12 ~~~~v~~l~-~~~f~~~~~----~~~~~---------------------------------lv~F~a~wC~~C~~~~p~~   53 (504)
T 2b5e_A           12 EDSAVVKLA-TDSFNEYIQ----SHDLV---------------------------------LAEFFAPWCGHCKNMAPEY   53 (504)
T ss_dssp             TTSSCEECC-TTTHHHHHT----TCSEE---------------------------------EEEEECTTCHHHHHHHHHH
T ss_pred             CCCCcEECC-HHHHHHHHh----cCCeE---------------------------------EEEEECCCCHHHHHhHHHH
Confidence            346677774 478888763    36777                                 9999999999999999999


Q ss_pred             HHHHHhcCC--cEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeE--EEEEcCC-CHHHHHHHHHHHh
Q 031271           98 KDFAAMYTD--VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKE--IDRVVGA-KKDELQMKTEKRR  161 (162)
Q Consensus        98 ~~~~~~~~~--v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~--i~~~~g~-~~~~l~~~l~~~~  161 (162)
                      +++++.+++  +.|+.||++.+++++++|+| .++||+++|++|+.  +.++.|. +.+.|.+++.+++
T Consensus        54 ~~~a~~~~~~~v~~~~vd~~~~~~l~~~~~v-~~~Pt~~~~~~g~~~~~~~~~G~~~~~~l~~~l~~~~  121 (504)
T 2b5e_A           54 VKAAETLVEKNITLAQIDCTENQDLCMEHNI-PGFPSLKIFKNSDVNNSIDYEGPRTAEAIVQFMIKQS  121 (504)
T ss_dssp             HHHHHHTTTTTCEEEEEETTTCHHHHHHTTC-CSSSEEEEEETTCTTCEEECCSCCSHHHHHHHHHHHT
T ss_pred             HHHHHHhccCCeEEEEEECCCCHHHHHhcCC-CcCCEEEEEeCCccccceeecCCCCHHHHHHHHHHhc
Confidence            999999974  99999999999999999999 99999999999986  7788887 8999999998765

>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}

Probab=99.74  E-value=2.8e-17  Score=116.24  Aligned_cols=105  Identities=19%  Similarity=0.271  Sum_probs=90.8

Q ss_pred             eeccccceeEEecCCCeeeee-----CceEEEEEecCCChh--hhhhhHHHHHHHHhc-C--CcEEEEEECCCcH-----
Q 031271           54 LIYCINEMVLNINDGGNVVFW-----VLKVVIYYTAAWCGP--CKFIEPYVKDFAAMY-T--DVQFIKIDVDWLP-----  118 (162)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~-----~k~vvv~F~a~wC~~--C~~~~~~l~~~~~~~-~--~v~f~~vd~d~~~-----  118 (162)
                      .....|++.+.+.+|+.+..+     .|+|+|+||++||++  |+.+.|.|.++.++| .  ++.|+.|++|..+     
T Consensus         7 ~G~~~p~f~l~~~~g~~~~l~~~~~~gk~vll~F~a~~C~~v~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~~~~~~~   86 (150)
T 3fw2_A            7 IGKYAPFFSLPNAKGEKITRSSDAFKQKSLLINFWASWNDSISQKQSNSELREIYKKYKKNKYIGMLGISLDVDKQQWKD   86 (150)
T ss_dssp             TTSBCCCCCEEBTTCCEECTTSTTTTTSEEEEEEECTTCCCHHHHHHHHHHHHHHHHHTTCSSEEEEEEECCSCHHHHHH
T ss_pred             CCCcCCccEeECCCCCEEecchhhhCCCEEEEEEEeCCCCchHHHHHHHHHHHHHHHhccCCCeEEEEEEcCCCHHHHHH
Confidence            344578899999999988777     499999999999999  999999999999998 4  4999999998664     


Q ss_pred             --------------------HHHHhcCCCCCccEEEEE-cCCeEEEEEcCCCHHHHHHHHHHHh
Q 031271          119 --------------------EAAKAFDLIDVLPTFVLV-KRGKEIDRVVGAKKDELQMKTEKRR  161 (162)
Q Consensus       119 --------------------~l~~~~~i~~~~Ptiv~~-~~Gk~i~~~~g~~~~~l~~~l~~~~  161 (162)
                                          .+++.|++ ..+|+++++ ++|+++.+..  +.+.+++.|++++
T Consensus        87 ~~~~~~~~~~~~~d~~~~~~~~~~~~~v-~~~P~~~lid~~G~i~~~~~--~~~~l~~~l~~ll  147 (150)
T 3fw2_A           87 AIKRDTLDWEQVCDFGGLNSEVAKQYSI-YKIPANILLSSDGKILAKNL--RGEELKKKIENIV  147 (150)
T ss_dssp             HHHHTTCCSEEECCSCGGGCHHHHHTTC-CSSSEEEEECTTSBEEEESC--CHHHHHHHHHHHH
T ss_pred             HHHHhCCCceEEEcCcccchHHHHHcCC-CccCeEEEECCCCEEEEccC--CHHHHHHHHHHHH
Confidence                                78999999 999999988 8999998775  7788888887664

>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}

Probab=99.74  E-value=3.8e-17  Score=119.23  Aligned_cols=104  Identities=13%  Similarity=0.206  Sum_probs=89.4

Q ss_pred             cccceeEEec--CCCeeeeeC---ceEEEEEecCCChhhhhhhHHHHHHHHhcCC--c------EEEEEECCC-cHHHHH
Q 031271           57 CINEMVLNIN--DGGNVVFWV---LKVVIYYTAAWCGPCKFIEPYVKDFAAMYTD--V------QFIKIDVDW-LPEAAK  122 (162)
Q Consensus        57 ~~~~~~~~~~--~~~~~~~~~---k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~--v------~f~~vd~d~-~~~l~~  122 (162)
                      ..|++.+.+.  +|+.+..++   |+|||+||++||++|+.+.|.|.++.++|++  +      .|+.|+++. .++..+
T Consensus        36 ~~p~f~l~~~~~~g~~~~l~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~~v~~v~v~~d~~~~~~~~  115 (183)
T 3lwa_A           36 QLPDIGGDSLMEEGTQINLSDFENQVVILNAWGQWCAPCRSESDDLQIIHEELQAAGNGDTPGGTVLGINVRDYSRDIAQ  115 (183)
T ss_dssp             CCCCCEEEBSSSTTCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHCC---CCSEEEEEEECSCCCHHHHH
T ss_pred             CCCceeccccccCCcEecHHHhCCCEEEEEEECCcCHhHHHHHHHHHHHHHHHHhcCCCccCCcEEEEEECCCCCHHHHH
Confidence            4688999999  999887655   8999999999999999999999999998854  7      999999998 666666


Q ss_pred             hc-------------------------CCCCCccEEEEE-cCCeEEEEEcCC-CHHHHHHHHHHHh
Q 031271          123 AF-------------------------DLIDVLPTFVLV-KRGKEIDRVVGA-KKDELQMKTEKRR  161 (162)
Q Consensus       123 ~~-------------------------~i~~~~Ptiv~~-~~Gk~i~~~~g~-~~~~l~~~l~~~~  161 (162)
                      +|                         ++ ..+|+++++ ++|+++.++.|. +.++|+++|++++
T Consensus       116 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~v-~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll  180 (183)
T 3lwa_A          116 DFVTDNGLDYPSIYDPPFMTAASLGGVPA-SVIPTTIVLDKQHRPAAVFLREVTSKDVLDVALPLV  180 (183)
T ss_dssp             HHHHHTTCCSCEEECTTCGGGGGTTTCCT-TCCSEEEEECTTSCEEEEECSCCCHHHHHHHHHHHH
T ss_pred             HHHHHcCCCccEEECCcchHHHHhccCCC-CCCCeEEEECCCCcEEEEEcCCCCHHHHHHHHHHHH
Confidence            65                         68 899976665 899999999998 8999999998875

>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}

Probab=99.74  E-value=4.7e-17  Score=115.04  Aligned_cols=105  Identities=20%  Similarity=0.344  Sum_probs=89.7

Q ss_pred             ccccceeEEecCCCeeeeeC---ceEEEEEecCCChhhhhhhHHHHHHHHhcCC--cEEEEEECCCc-------------
Q 031271           56 YCINEMVLNINDGGNVVFWV---LKVVIYYTAAWCGPCKFIEPYVKDFAAMYTD--VQFIKIDVDWL-------------  117 (162)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~---k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~--v~f~~vd~d~~-------------  117 (162)
                      ...|++.+.+.+|+.+..++   |+++|+||++||++|+.+.|.+.++.+++++  +.++.|+++..             
T Consensus         6 ~~~p~~~l~~~~g~~~~l~~~~gk~vll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~   85 (154)
T 3kcm_A            6 NPAPDFTLNTLNGEVVKLSDLKGQVVIVNFWATWCPPCREEIPSMMRLNAAMAGKPFRMLCVSIDEGGKVAVEEFFRKTG   85 (154)
T ss_dssp             SBCCCCEEECTTSCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTSSEEEEEEECCTTHHHHHHHHHHHHC
T ss_pred             CCCCCeEEEcCCCCEEehhhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCeEEEEEEcCCcchHHHHHHHHHcC
Confidence            34688999999999886654   9999999999999999999999999999975  89999999875             


Q ss_pred             ----------HHHHHhcCCCCCccEEEEE-cCCeEEEEEcCC---CHHHHHHHHHHHh
Q 031271          118 ----------PEAAKAFDLIDVLPTFVLV-KRGKEIDRVVGA---KKDELQMKTEKRR  161 (162)
Q Consensus       118 ----------~~l~~~~~i~~~~Ptiv~~-~~Gk~i~~~~g~---~~~~l~~~l~~~~  161 (162)
                                ..+++.|++ ..+|+++++ ++|+++.++.|.   +.+.++++|+++.
T Consensus        86 ~~~~~~~d~~~~~~~~~~v-~~~P~~~lid~~G~i~~~~~g~~~~~~~~l~~~l~~l~  142 (154)
T 3kcm_A           86 FTLPVLLDADKRVGKLYGT-TGVPETFVIDRHGVILKKVVGAMEWDHPEVIAFLNNEL  142 (154)
T ss_dssp             CCCCEEECTTCHHHHHHTC-CSBCEEEEECTTSBEEEEEESCCCTTSHHHHHHHHTC-
T ss_pred             CCeeEEecCchHHHHHhCC-CCCCeEEEECCCCcEEEEEcCCCccccHHHHHHHHHHH
Confidence                      348889999 999976666 899999999887   5678989888654

>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}

Probab=99.73  E-value=4.4e-17  Score=116.82  Aligned_cols=103  Identities=18%  Similarity=0.349  Sum_probs=89.0

Q ss_pred             cccceeEEecCCCeeeee---CceEEEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECC------------------
Q 031271           57 CINEMVLNINDGGNVVFW---VLKVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVD------------------  115 (162)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~---~k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d------------------  115 (162)
                      ..|++.+.+.+|+.+..+   .|++||+||++||++|+.+.|.|.++.++|+++.|+.|+++                  
T Consensus        16 ~~p~~~l~~~~g~~~~l~~~~gk~~lv~F~~~~C~~C~~~~~~l~~l~~~~~~v~vv~i~~d~~~~~~~~~~~~~~~~~~   95 (165)
T 3ha9_A           16 REASFSLTTIDGEVISLNNVGGDVVILWFMAAWCPSCVYMADLLDRLTEKYREISVIAIDFWTAEALKALGLNKPGYPPP   95 (165)
T ss_dssp             HHHCCCEEBTTSCEECGGGCCSSEEEEEEECTTCTTHHHHHHHHHHHHHHCTTEEEEEEECCSHHHHHHHTCCSTTSCCC
T ss_pred             cCCCCEeecCCCCEeeHHHhCCCEEEEEEECCCCcchhhhHHHHHHHHHHcCCcEEEEEEecccccccccccccccCCCC
Confidence            457899999999988654   49999999999999999999999999999999999999988                  


Q ss_pred             CcH----------------------HHHHhcCCCCCccEEEEE-cCCeEEEEEcCC-CHHHHHHHHHHHh
Q 031271          116 WLP----------------------EAAKAFDLIDVLPTFVLV-KRGKEIDRVVGA-KKDELQMKTEKRR  161 (162)
Q Consensus       116 ~~~----------------------~l~~~~~i~~~~Ptiv~~-~~Gk~i~~~~g~-~~~~l~~~l~~~~  161 (162)
                      ..+                      .+++.|++ ..+|+++++ ++|+++. .... +.+.|++.|++++
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~v-~~~P~~~lid~~G~i~~-~g~~~~~~~l~~~l~~l~  163 (165)
T 3ha9_A           96 DTPEMFRKFIANYGDPSWIMVMDDGSLVEKFNV-RSIDYIVIMDKSSNVLY-AGTTPSLGELESVIKSVQ  163 (165)
T ss_dssp             CCHHHHHHHHHHHSCTTSEEEECCSHHHHHTTC-CSSSEEEEEETTCCEEE-EEESCCHHHHHHHHHHC-
T ss_pred             CCHHHHHHHHHHcCCCCeeEEeChHHHHHHhCC-CCceEEEEEcCCCcEEE-eCCCCCHHHHHHHHHHHh
Confidence            443                      78999999 999999888 8999988 4444 7999999998765

>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}

Probab=99.73  E-value=2.1e-17  Score=116.76  Aligned_cols=105  Identities=22%  Similarity=0.232  Sum_probs=90.9

Q ss_pred             ccccceeEEecCCCeeeee---CceEEEEEecCCChhhhhhhHHHHHHHHhcCC--cEEEEEEC----------------
Q 031271           56 YCINEMVLNINDGGNVVFW---VLKVVIYYTAAWCGPCKFIEPYVKDFAAMYTD--VQFIKIDV----------------  114 (162)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~---~k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~--v~f~~vd~----------------  114 (162)
                      ...|++.+.+.+|+.+..+   +|+++|+||++||++|+.+.|.+.++.+++++  +.++.|+.                
T Consensus         6 ~~~p~~~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~   85 (153)
T 2l5o_A            6 KTAPAFSLPDLHGKTVSNADLQGKVTLINFWFPSCPGCVSEMPKIIKTANDYKNKNFQVLAVAQPIDPIESVRQYVKDYG   85 (153)
T ss_dssp             TTCCSCEEECTTSCEEEHHHHTTCEEEEEEECTTCTTHHHHHHHHHHHHHHGGGTTEEEEEEECTTSCHHHHHHHHHHTT
T ss_pred             CCCCCcEeecCCCCCccHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHhccCCeEEEEEecCCCCHHHHHHHHHHcC
Confidence            3468899999999988654   48999999999999999999999999999874  88887763                


Q ss_pred             -------CCcHHHHHhcCCCCCccEEEEE-cCCeEEEEEcCC-CHHHHHHHHHHHh
Q 031271          115 -------DWLPEAAKAFDLIDVLPTFVLV-KRGKEIDRVVGA-KKDELQMKTEKRR  161 (162)
Q Consensus       115 -------d~~~~l~~~~~i~~~~Ptiv~~-~~Gk~i~~~~g~-~~~~l~~~l~~~~  161 (162)
                             +....+++.|++ ..+|+++++ ++|+++.++.|. +.+.|.++|++++
T Consensus        86 ~~~~~~~d~~~~~~~~~~i-~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll  140 (153)
T 2l5o_A           86 LPFTVMYDADKAVGQAFGT-QVYPTSVLIGKKGEILKTYVGEPDFGKLYQEIDTAW  140 (153)
T ss_dssp             CCSEEEECSSCHHHHHHTC-CSSSEEEEECSSSCCCEEEESSCCHHHHHHHHHHHH
T ss_pred             CCceEEcCchHHHHHHcCC-CccCeEEEECCCCcEEEEEcCCCCHHHHHHHHHHHH
Confidence                   345679999999 999999988 899999999998 8999999998765

>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus}

Probab=99.73  E-value=4.6e-17  Score=115.88  Aligned_cols=99  Identities=16%  Similarity=0.133  Sum_probs=85.4

Q ss_pred             ccccceeEEecCCCeeeeeC---ceEEEEEecCCChhhhhhhHHHHHHHHhcCC--cEEEEEECCCcHH-----------
Q 031271           56 YCINEMVLNINDGGNVVFWV---LKVVIYYTAAWCGPCKFIEPYVKDFAAMYTD--VQFIKIDVDWLPE-----------  119 (162)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~---k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~--v~f~~vd~d~~~~-----------  119 (162)
                      ...|++.+.+.+|+.+..++   |+++|+||++||++|+...|.|.++.++|++  +.++.|++|...+           
T Consensus        13 ~~~p~f~l~~~~G~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~~   92 (152)
T 2lrt_A           13 ASIIDIQLKDLKGNTRSLTDLKGKVVLIDFTVYNNAMSAAHNLALRELYNKYASQGFEIYQISLDGDEHFWKTSADNLPW   92 (152)
T ss_dssp             TCSCCCCEEBTTSCEECTTTGGGSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEECSCCHHHHHHHHTTCSS
T ss_pred             CCCCCeEEEcCCCCEEeHHHhCCCEEEEEEEcCCChhhHHHHHHHHHHHHHhccCCeEEEEEEccCCHHHHHHHHhCCCc
Confidence            45788999999999886654   8999999999999999999999999999864  9999999987654           


Q ss_pred             ------------HHHhcCCCCCccEEEEE-cCCeEEEEEcCC-CHHHHHH
Q 031271          120 ------------AAKAFDLIDVLPTFVLV-KRGKEIDRVVGA-KKDELQM  155 (162)
Q Consensus       120 ------------l~~~~~i~~~~Ptiv~~-~~Gk~i~~~~g~-~~~~l~~  155 (162)
                                  +++.|++ ..+|+++++ ++|+++.+..|. +.++...
T Consensus        93 ~~~~d~~~~~~~~~~~~~v-~~~P~~~lid~~G~i~~~~~g~~~~e~~~~  141 (152)
T 2lrt_A           93 VCVRDANGAYSSYISLYNV-TNLPSVFLVNRNNELSARGENIKDLDEAIK  141 (152)
T ss_dssp             EEEECSSGGGCHHHHHHTC-CSCSEEEEEETTTEEEEETTTCSCHHHHHH
T ss_pred             eEEECCCCcchHHHHHcCc-ccCceEEEECCCCeEEEecCCHHHHHHHHH
Confidence                        8899999 999998888 799999999998 6544433

>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus}

Probab=99.58  E-value=2.3e-19  Score=124.19  Aligned_cols=82  Identities=21%  Similarity=0.434  Sum_probs=73.8

Q ss_pred             EEEEecCCChhhhhhhHHH---HHHHHhcCC-cEEEEEECC--CcHHHHHhcCCCCCccEEEEE--cCCeE--EEEEcCC
Q 031271           79 VIYYTAAWCGPCKFIEPYV---KDFAAMYTD-VQFIKIDVD--WLPEAAKAFDLIDVLPTFVLV--KRGKE--IDRVVGA  148 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l---~~~~~~~~~-v~f~~vd~d--~~~~l~~~~~i~~~~Ptiv~~--~~Gk~--i~~~~g~  148 (162)
                      +|+||++||++|+.+.|.+   +++.+.+++ +.++.||++  .+++++++|++ .++||+++|  ++|++  +.++.|.
T Consensus        23 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~v-~~~Pt~~~~d~~~G~~~~~~~~~G~  101 (130)
T 2lst_A           23 MVYFHSEHCPYCQQMNTFVLSDPGVSRLLEARFVVASVSVDTPEGQELARRYRV-PGTPTFVFLVPKAGAWEEVGRLFGS  101 (130)
Confidence            9999999999999999999   899888876 999999984  66889999999 999999999  67998  8899998


Q ss_pred             -CHHHHHHHHHHHh
Q 031271          149 -KKDELQMKTEKRR  161 (162)
Q Consensus       149 -~~~~l~~~l~~~~  161 (162)
                       +.+.|.++|++++
T Consensus       102 ~~~~~l~~~l~~~~  115 (130)
T 2lst_A          102 RPRAEFLKELRQVC  115 (130)
Confidence             8889999988764

>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A

Probab=99.73  E-value=3e-17  Score=118.01  Aligned_cols=104  Identities=14%  Similarity=0.127  Sum_probs=86.1

Q ss_pred             eccccceeEEec--CCCeeee----eCceEEEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEEC--------------
Q 031271           55 IYCINEMVLNIN--DGGNVVF----WVLKVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDV--------------  114 (162)
Q Consensus        55 ~~~~~~~~~~~~--~~~~~~~----~~k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~--------------  114 (162)
                      ....|++.+.+.  +|+.+..    .+|+++|+||++||++|+.+.|.|+++.++  ++.++.|++              
T Consensus        25 G~~~P~f~l~~~~~~g~~~~~~~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~--~v~vv~v~~~~~~~~~~~~~~~~  102 (168)
T 2b1k_A           25 GKPVPKFRLESLDNPGQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ--GIRVVGMNYKDDRQKAISWLKEL  102 (168)
T ss_dssp             TSBCCCCEEEESSSTTCEEEGGGGCCSSCEEEEEECTTCHHHHHHHHHHHHHHHT--TCCEEEEEESCCHHHHHHHHHHH
T ss_pred             CCcCCCeEeecccCCCcEeehhHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHC--CCEEEEEECCCChHHHHHHHHHc
Confidence            335688999998  8887743    458999999999999999999999999886  788888874              


Q ss_pred             ---------CCcHHHHHhcCCCCCccEEEE-EcCCeEEEEEcCC-CHHHHHHHHHHHh
Q 031271          115 ---------DWLPEAAKAFDLIDVLPTFVL-VKRGKEIDRVVGA-KKDELQMKTEKRR  161 (162)
Q Consensus       115 ---------d~~~~l~~~~~i~~~~Ptiv~-~~~Gk~i~~~~g~-~~~~l~~~l~~~~  161 (162)
                               |.+..+++.|++ .++|++++ .++|+++.++.|. +.+.+++.|++++
T Consensus       103 ~~~~~~~~~d~~~~~~~~~~v-~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l  159 (168)
T 2b1k_A          103 GNPYALSLFDGDGMLGLDLGV-YGAPETFLIDGNGIIRYRHAGDLNPRVWEEEIKPLW  159 (168)
T ss_dssp             CCCCSEEEEETTCHHHHHHTC-CSSSEEEEECTTSBEEEEEESCCCHHHHHHTTHHHH
T ss_pred             CCCCceeeECcchHHHHHcCc-cccCEEEEECCCCeEEEEEeCCCCHHHHHHHHHHHH
Confidence                     455678999999 99996554 4899999999997 8888888877654

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A

Probab=99.73  E-value=6.9e-17  Score=130.67  Aligned_cols=107  Identities=14%  Similarity=0.098  Sum_probs=88.8

Q ss_pred             cccCCCceeEeechhhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhhhhhh
Q 031271           15 IHAKTPLVMELQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIE   94 (162)
Q Consensus        15 ~~~~~~~v~~i~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~   94 (162)
                      .....+.|..++. ++|++.++.    ++++                                 +|+|||+||++|+...
T Consensus         8 ~~~~~~~v~~lt~-~~f~~~i~~----~~~v---------------------------------lV~FyApWC~~~~~~~   49 (367)
T 3us3_A            8 EYDGVDRVINVNA-KNYKNVFKK----YEVL---------------------------------ALLYHEPPEDDKASQR   49 (367)
T ss_dssp             CCCCCCCCEECCT-TTHHHHHHH----CSEE---------------------------------EEEEECCCCSSHHHHH
T ss_pred             CCCCCCccEECCH-HHHHHHHhh----CCeE---------------------------------EEEEECCCchhHHHhh
Confidence            3445567877754 788888743    5777                                 9999999999974433


Q ss_pred             ------HHHHHHHHhcCC--cEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHHHHHHHh
Q 031271           95 ------PYVKDFAAMYTD--VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQMKTEKRR  161 (162)
Q Consensus        95 ------~~l~~~~~~~~~--v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~~l~~~~  161 (162)
                            |.++++++.+.+  +.|++||++.+++++++|+| .++||+++|++|+.+ .+.|. +.+.|.++|.++.
T Consensus        50 ~l~~~~p~~e~~a~~~~~~~v~~~~Vd~~~~~~l~~~~~V-~~~PTl~~f~~G~~~-~y~G~~~~~~i~~~i~~~~  123 (367)
T 3us3_A           50 QFEMEELILELAAQVLEDKGVGFGLVDSEKDAAVAKKLGL-TEEDSIYVFKEDEVI-EYDGEFSADTLVEFLLDVL  123 (367)
T ss_dssp             HHHHHHHHHHHHHHHHTTTTEEEEEEETTTTHHHHHHHTC-CSTTEEEEEETTEEE-ECCSCCSHHHHHHHHHHHH
T ss_pred             hhccccHHHHHHHHHhhcCCceEEEEeCcccHHHHHHcCC-CcCceEEEEECCcEE-EeCCCCCHHHHHHHHHHhc
Confidence                  688999988754  99999999999999999999 999999999999886 56676 9999999998864

>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=99.73  E-value=2.2e-17  Score=116.81  Aligned_cols=105  Identities=17%  Similarity=0.224  Sum_probs=86.4

Q ss_pred             eccccceeEEecCC--------Ceeeee---CceEEEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECC--------
Q 031271           55 IYCINEMVLNINDG--------GNVVFW---VLKVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVD--------  115 (162)
Q Consensus        55 ~~~~~~~~~~~~~~--------~~~~~~---~k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d--------  115 (162)
                      ....|++.+.+.+|        +.+..+   +++++|+||++||++|+.+.|.|+++.++ +++.|+.|+++        
T Consensus        11 g~~~p~f~l~~~~g~~~~~~~~~~~~l~~~~gk~~ll~f~~~~C~~C~~~~~~l~~l~~~-~~v~~v~v~~~~~~~~~~~   89 (156)
T 1kng_A           11 GRPAPQTALPPLEGLQADNVQVPGLDPAAFKGKVSLVNVWASWCVPCHDEAPLLTELGKD-KRFQLVGINYKDAADNARR   89 (156)
T ss_dssp             -CBCCCCCBCCCTTCEETTEECCCBCGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHTTC-TTSEEEEEEESCCHHHHHH
T ss_pred             CCCCCCceeeeccCcccccccCceechHHhCCCEEEEEEEcccCHhHHHHHHHHHHHHhc-CCeEEEEEECCCCHHHHHH
Confidence            34567888888888        666443   48999999999999999999999999877 56999988864        


Q ss_pred             ---------------CcHHHHHhcCCCCCccEEEEE-cCCeEEEEEcCC-CHHHHHHHHHHHh
Q 031271          116 ---------------WLPEAAKAFDLIDVLPTFVLV-KRGKEIDRVVGA-KKDELQMKTEKRR  161 (162)
Q Consensus       116 ---------------~~~~l~~~~~i~~~~Ptiv~~-~~Gk~i~~~~g~-~~~~l~~~l~~~~  161 (162)
                                     ....+++.|++ .++|+++++ ++|+++.++.|. +.+.|.++|++++
T Consensus        90 ~~~~~~~~~~~~~~d~~~~~~~~~~v-~~~P~~~~id~~G~i~~~~~g~~~~~~l~~~l~~~l  151 (156)
T 1kng_A           90 FLGRYGNPFGRVGVDANGRASIEWGV-YGVPETFVVGREGTIVYKLVGPITPDNLRSVLLPQM  151 (156)
T ss_dssp             HHHHHCCCCSEEEEETTSHHHHHTTC-CSSCEEEEECTTSBEEEEEESCCCHHHHHHTHHHHH
T ss_pred             HHHHcCCCCceeeeCchhHHHHhcCc-CccCeEEEEcCCCCEEEEEeCCCCHHHHHHHHHHHH
Confidence                           34478889999 999976666 899999999998 8888888887764

>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A

Probab=99.72  E-value=5.7e-17  Score=118.21  Aligned_cols=104  Identities=13%  Similarity=0.133  Sum_probs=87.0

Q ss_pred             eccccceeEEecCC--Ceeeee---CceEEEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECC--------------
Q 031271           55 IYCINEMVLNINDG--GNVVFW---VLKVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVD--------------  115 (162)
Q Consensus        55 ~~~~~~~~~~~~~~--~~~~~~---~k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d--------------  115 (162)
                      ....|++.+.+.+|  ..+..+   .|+|+|+||++||++|+.+.|.|+++.++  ++.++.|+++              
T Consensus        33 G~~~P~f~l~~~~g~~~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~--~v~vv~vs~~d~~~~~~~~~~~~~  110 (176)
T 3kh7_A           33 GKPFPAFDLPSVQDPARRLTEADLKGKPALVNVWGTWCPSCRVEHPELTRLAEQ--GVVIYGINYKDDNAAAIKWLNELH  110 (176)
T ss_dssp             TSBCCCCEEEBSSCTTSEEEGGGGCSSCEEEEEECTTCHHHHHHHHHHHHHHHT--TCEEEEEEESCCHHHHHHHHHHTT
T ss_pred             CCcCCCcEecccCCCCceecHHHhCCCEEEEEEECCcCHHHHHHHHHHHHHHHC--CCEEEEEeCCCCHHHHHHHHHHcC
Confidence            34568899999999  666544   48999999999999999999999999887  7888888853              


Q ss_pred             ---------CcHHHHHhcCCCCCccEEEEE-cCCeEEEEEcCC-CHHHHHHHHHHHh
Q 031271          116 ---------WLPEAAKAFDLIDVLPTFVLV-KRGKEIDRVVGA-KKDELQMKTEKRR  161 (162)
Q Consensus       116 ---------~~~~l~~~~~i~~~~Ptiv~~-~~Gk~i~~~~g~-~~~~l~~~l~~~~  161 (162)
                               ....+++.|++ ..+|+++++ ++|+++.++.|. +.+.+.+.|++.+
T Consensus       111 ~~~~~~~~d~~~~~~~~~~v-~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l  166 (176)
T 3kh7_A          111 NPYLLSISDADGTLGLDLGV-YGAPETYLIDKQGIIRHKIVGVVDQKVWREQLAPLY  166 (176)
T ss_dssp             CCCSEEEEETTCHHHHHHTC-CSSCEEEEECTTCBEEEEEESCCCHHHHHHHTHHHH
T ss_pred             CCCceEEECCcchHHHHcCC-CCCCeEEEECCCCeEEEEEcCCCCHHHHHHHHHHHH
Confidence                     34568889999 999977666 899999999998 8888888777654

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A

Probab=99.72  E-value=6.1e-17  Score=129.84  Aligned_cols=103  Identities=16%  Similarity=0.196  Sum_probs=87.9

Q ss_pred             CCCceeEeechhhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhhhhhhHH-
Q 031271           18 KTPLVMELQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPY-   96 (162)
Q Consensus        18 ~~~~v~~i~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~~~-   96 (162)
                      ..+.|..++. ++|++.+.    +++++                                 +|+|||+||+ |+.+.|. 
T Consensus         9 ~~~~v~~l~~-~~f~~~i~----~~~~~---------------------------------lV~F~a~wC~-c~~~~p~~   49 (350)
T 1sji_A            9 GKDRVVSLTE-KNFKQVLK----KYDVL---------------------------------CLYYHESVSS-DKVAQKQF   49 (350)
T ss_dssp             CCCCCEEECH-HHHHHHHT----TCSEE---------------------------------EEEEECCSCS-SSTTSHHH
T ss_pred             CCCccEECCH-HHHHHHHh----hCCeE---------------------------------EEEEECCCCc-chhhCchh
Confidence            3456777754 77888774    25677                                 9999999999 9999888 


Q ss_pred             ------HHHHHHhcC--CcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHHHHHHHh
Q 031271           97 ------VKDFAAMYT--DVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQMKTEKRR  161 (162)
Q Consensus        97 ------l~~~~~~~~--~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~~l~~~~  161 (162)
                            |+++++.+.  ++.|+.||++.+++++++|+| .++||+++|++|+. .++.|. +.+.|.+++.++.
T Consensus        50 ~~~~~~~~~~a~~~~~~~v~~~~Vd~~~~~~l~~~~~v-~~~Pt~~~~~~g~~-~~~~G~~~~~~l~~~i~~~~  121 (350)
T 1sji_A           50 QLKEIVLELVAQVLEHKDIGFVMVDAKKEAKLAKKLGF-DEEGSLYVLKGDRT-IEFDGEFAADVLVEFLLDLI  121 (350)
T ss_dssp             HHHHHHHHHHHHHGGGSSEEEEEEETTTTHHHHHHHTC-CSTTEEEEEETTEE-EEECSCCCHHHHHHHHHTTS
T ss_pred             hhhhHHHHHHHHHHhhcCcEEEEEeCCCCHHHHHhcCC-CccceEEEEECCcE-EEecCCCCHHHHHHHHHHhc
Confidence                  899998885  499999999999999999999 99999999999994 567777 9999999998764

>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A

Probab=99.71  E-value=8.5e-17  Score=117.84  Aligned_cols=107  Identities=20%  Similarity=0.148  Sum_probs=89.6

Q ss_pred             eeccccceeEEecCCCeeeeeC---ceEEEEEecCCChhhhhhhHHHHHHHHhcCC-cEEEEEEC---------------
Q 031271           54 LIYCINEMVLNINDGGNVVFWV---LKVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDV---------------  114 (162)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~---k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~-v~f~~vd~---------------  114 (162)
                      .....|++.+.+.+|+.+..++   |+|||+||++||++|+.+.|.|+++.++|++ +.|+.|+.               
T Consensus         9 ~g~~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~v~v~~d~~~~~~~d~~~~~~   88 (188)
T 2cvb_A            9 LESPLIDAELPDPRGGRYRLSQFHEPLLAVVFMCNHCPYVKGSIGELVALAERYRGKVAFVGINANDYEKYPEDAPEKMA   88 (188)
T ss_dssp             TTCBCCCCEEECTTSCEEEGGGCCSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTTTEEEEEEECCCTTTCGGGSHHHHH
T ss_pred             CCCCCCCceeecCCCCEEeHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHhhcCeEEEEEEcCccccccccCHHHHH
Confidence            3445788999999999886654   9999999999999999999999999999987 99999988               


Q ss_pred             --------------CCcHHHHHhcCCCCCccEEEEE-cCCeEEEEE--------cCC-CHHHHHHHHHHHh
Q 031271          115 --------------DWLPEAAKAFDLIDVLPTFVLV-KRGKEIDRV--------VGA-KKDELQMKTEKRR  161 (162)
Q Consensus       115 --------------d~~~~l~~~~~i~~~~Ptiv~~-~~Gk~i~~~--------~g~-~~~~l~~~l~~~~  161 (162)
                                    |...++++.|++ ..+|+++++ ++|+++.+-        .|. +.++|++.|++++
T Consensus        89 ~~~~~~~~~~~~~~d~~~~~~~~~~v-~~~P~~~lid~~G~i~~~g~~~~~~~~~g~~~~~~l~~~i~~ll  158 (188)
T 2cvb_A           89 AFAEEHGIFFPYLLDETQEVAKAYRA-LRTPEVFLFDERRLLRYHGRVNDNPKDPSKVQSHDLEAAIEALL  158 (188)
T ss_dssp             HHHHHHTCCSCEEECSSSHHHHHTTC-CEESEEEEECTTCBEEEEECSSSCTTCGGGCCCCHHHHHHHHHH
T ss_pred             HHHHHhCCCceEEECCcchHHHHcCC-CCCCeEEEECCCCcEEEEEecCCccccccccCHHHHHHHHHHHH
Confidence                          345578999999 999998888 899998871        122 5788888888765

>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A

Probab=99.71  E-value=1.4e-17  Score=118.95  Aligned_cols=99  Identities=17%  Similarity=0.256  Sum_probs=81.6

Q ss_pred             eEEecCCCeeee---eCceEEEEEecCCChhhhhhhHHHHHHHHhcC--CcEEEEEEC----------------------
Q 031271           62 VLNINDGGNVVF---WVLKVVIYYTAAWCGPCKFIEPYVKDFAAMYT--DVQFIKIDV----------------------  114 (162)
Q Consensus        62 ~~~~~~~~~~~~---~~k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~--~v~f~~vd~----------------------  114 (162)
                      .+.+.+|+.+..   .+|+++|+||++||++|+.+.|.|+++.++|.  ++.++.|++                      
T Consensus        22 ~l~~~~g~~~~~~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~  101 (164)
T 2h30_A           22 TMKTADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQAEKWAQDAKFSSANLITVASPGFLHEKKDGEFQKWYAGLNYP  101 (164)
T ss_dssp             TCEETTSSBGGGGCCTTSCEEEEECCTTCHHHHHHHHHHHHHHTCGGGTTSEEEEEECTTSTTCCCTTHHHHHHTTSCCT
T ss_pred             ccCCCCCCEeeHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCcEEEEEEcCCCccccCHHHHHHHHHhCCCC
Confidence            456667765543   34889999999999999999999999998863  466666653                      


Q ss_pred             ------CCcHHHHHhcCCCCCccEEEEE-cCCeEEEEEcCC-CHHHHHHHHHHHh
Q 031271          115 ------DWLPEAAKAFDLIDVLPTFVLV-KRGKEIDRVVGA-KKDELQMKTEKRR  161 (162)
Q Consensus       115 ------d~~~~l~~~~~i~~~~Ptiv~~-~~Gk~i~~~~g~-~~~~l~~~l~~~~  161 (162)
                            |.+.+++++|++ .++|+++++ ++|+++.++.|. +.+.|+++|++++
T Consensus       102 ~~~~~~d~~~~~~~~~~v-~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~~~  155 (164)
T 2h30_A          102 KLPVVTDNGGTIAQNLNI-SVYPSWALIGKDGDVQRIVKGSINEAQALALIRNPN  155 (164)
T ss_dssp             TSCEEECTTCHHHHHTTC-CSSSEEEEECTTSCEEEEEESCCCHHHHHHHHHCTT
T ss_pred             cceEEEcCchHHHHHcCC-CccceEEEECCCCcEEEEEcCCCCHHHHHHHHHHHH
Confidence                  345679999999 999999988 899999999997 8999999998765

>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=99.70  E-value=4.5e-16  Score=113.69  Aligned_cols=106  Identities=20%  Similarity=0.350  Sum_probs=90.2

Q ss_pred             eccccceeEEecCCCeeeeeC---ceEEEEEecCCChhhhhhhHHHHHHHHhcC--CcEEEEEECCCc-----HHHHHhc
Q 031271           55 IYCINEMVLNINDGGNVVFWV---LKVVIYYTAAWCGPCKFIEPYVKDFAAMYT--DVQFIKIDVDWL-----PEAAKAF  124 (162)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~---k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~--~v~f~~vd~d~~-----~~l~~~~  124 (162)
                      ....|++.+.+.+|+.+..++   |+++|+||++||++|+.+.|.|.++.++|+  ++.++.|++|..     ..+.+++
T Consensus        37 g~~~p~f~l~~~~G~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~  116 (186)
T 1jfu_A           37 PLKLPDLAFEDADGKPKKLSDFRGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTRDPEKPKTFLKEA  116 (186)
T ss_dssp             CCBCCCCEEECTTSCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBTTEEEEEEECCCSCTTHHHHHHHHT
T ss_pred             CCcCCCcEeEcCCCCEeeHHHcCCCEEEEEEEeCCCHhHHHHHHHHHHHHHHhccCCcEEEEEECCCCCHHHHHHHHHHc
Confidence            445788999999999887654   899999999999999999999999999987  599999998864     4566777


Q ss_pred             CCCC-----------------------CccEEEEE-cCCeEEEEEcCC-C--HHHHHHHHHHHh
Q 031271          125 DLID-----------------------VLPTFVLV-KRGKEIDRVVGA-K--KDELQMKTEKRR  161 (162)
Q Consensus       125 ~i~~-----------------------~~Ptiv~~-~~Gk~i~~~~g~-~--~~~l~~~l~~~~  161 (162)
                      ++ .                       .+|+++++ ++|+++.++.|. +  .++++++|++++
T Consensus       117 ~~-~~~~~~~d~~~~~~~~~~~~~~~~~~P~~~lid~~G~i~~~~~g~~~~~~~~l~~~l~~ll  179 (186)
T 1jfu_A          117 NL-TRLGYFNDQKAKVFQDLKAIGRALGMPTSVLVDPQGCEIATIAGPAEWASEDALKLIRAAT  179 (186)
T ss_dssp             TC-CTTCCEECTTCHHHHHHHTTTCCSSSSEEEEECTTSBEEEEEESCCCTTSHHHHHHHHHHH
T ss_pred             CC-CCCceEECCcchHHHHhccccccCCCCEEEEECCCCCEEEEEecCCccCHHHHHHHHHHHh
Confidence            76 4                       89998888 899999999887 3  788999998765

>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}

Probab=99.70  E-value=7.4e-17  Score=113.17  Aligned_cols=101  Identities=13%  Similarity=0.103  Sum_probs=79.0

Q ss_pred             eccccceeEEecCCCeeeeeC---ceEEEEEecCCChhhhhhhHHHHHHHHhcCC--cEEEEEECCCcH-----------
Q 031271           55 IYCINEMVLNINDGGNVVFWV---LKVVIYYTAAWCGPCKFIEPYVKDFAAMYTD--VQFIKIDVDWLP-----------  118 (162)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~---k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~--v~f~~vd~d~~~-----------  118 (162)
                      ....|++.+ +.+|+.+..++   |+|+|+||++||++|+.+.|.|.++.++|++  +.++.|++|...           
T Consensus        10 G~~~P~f~l-~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~   88 (143)
T 4fo5_A           10 GDLAPRIEF-LGNDAKASFHNQLGRYTLLNFWAAYDAESRARNVQLANEVNKFGPDKIAMCSISMDEKESIFTETVKIDK   88 (143)
T ss_dssp             TSBCCCCCC------CCCSCCSSCCEEEEEEECTTCHHHHHHHHHHHHHHTTSCTTTEEEEEEECCSCHHHHHHHHHHHT
T ss_pred             cccCCceEE-cCCCCEEEHHHhCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCcCCEEEEEEEccCCHHHHHHHHHHhC
Confidence            345688888 78888776554   8999999999999999999999999999964  999999887432           


Q ss_pred             ---------------HHHHhcCCCCCccEEEEE-cCCeEEEEEcCCCHHHHHHHHHH
Q 031271          119 ---------------EAAKAFDLIDVLPTFVLV-KRGKEIDRVVGAKKDELQMKTEK  159 (162)
Q Consensus       119 ---------------~l~~~~~i~~~~Ptiv~~-~~Gk~i~~~~g~~~~~l~~~l~~  159 (162)
                                     .+++.|++ ..+|+++++ ++|+++.+.  ...+++.+.|++
T Consensus        89 ~~~~~~~~d~~~~~~~~~~~~~v-~~~P~~~lid~~G~i~~~~--~~~~~l~~~l~~  142 (143)
T 4fo5_A           89 LDLSTQFHEGLGKESELYKKYDL-RKGFKNFLINDEGVIIAAN--VTPEKLTEILKA  142 (143)
T ss_dssp             CCGGGEEECTTGGGSHHHHHTTG-GGCCCEEEECTTSBEEEES--CCHHHHHHHHTC
T ss_pred             CCCceeeecccccchHHHHHcCC-CCCCcEEEECCCCEEEEcc--CCHHHHHHHHHh
Confidence                           57789999 999987777 699998874  457778777764

>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A

Probab=99.70  E-value=5.2e-18  Score=121.78  Aligned_cols=91  Identities=9%  Similarity=0.116  Sum_probs=71.9

Q ss_pred             EeechhhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhhhhhhHHHHHHHH-
Q 031271           24 ELQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYVKDFAA-  102 (162)
Q Consensus        24 ~i~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~~~l~~~~~-  102 (162)
                      .++...+|++.++.+...++++                                 +|+|||+||++|+.+.|.+.+..+ 
T Consensus        26 ~i~W~~~~~~al~~A~~~~KpV---------------------------------lV~F~A~WC~~Ck~m~p~~~~~~~~   72 (151)
T 3ph9_A           26 DITWVQTYEEGLFYAQKSKKPL---------------------------------MVIHHLEDCQYSQALKKVFAQNEEI   72 (151)
T ss_dssp             TSCCCSSHHHHHHHHHHHTCCE---------------------------------EEEECCTTCHHHHHHHHHHHHCHHH
T ss_pred             CCcchhCHHHHHHHHHHcCCcE---------------------------------EEEEECCCCHhHHHHHHHHhcCHHH
Confidence            3444468999999988889999                                 999999999999999999875421 


Q ss_pred             -hcCCcEEEEEECC-CcHHHHHhcCCCCCccEEEEEc-CCeEEEEEcCC
Q 031271          103 -MYTDVQFIKIDVD-WLPEAAKAFDLIDVLPTFVLVK-RGKEIDRVVGA  148 (162)
Q Consensus       103 -~~~~v~f~~vd~d-~~~~l~~~~~i~~~~Ptiv~~~-~Gk~i~~~~g~  148 (162)
                       .+.+..|+.|++| +..+++.+|++ .++||+++++ +|+++.++.|.
T Consensus        73 ~~~~~~~fv~V~vD~e~~~~~~~~~v-~~~PT~~f~~~~G~~v~~~~G~  120 (151)
T 3ph9_A           73 QEMAQNKFIMLNLMHETTDKNLSPDG-QYVPRIMFVDPSLTVRADIAGR  120 (151)
T ss_dssp             HHHHHHTCEEEEESSCCSCGGGCTTC-CCSSEEEEECTTSCBCTTCCCS
T ss_pred             HHHhhcCeEEEEecCCchhhHhhcCC-CCCCEEEEECCCCCEEEEEeCC
Confidence             2223456666665 34456789999 9999999996 99999999885

>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A

Probab=99.69  E-value=4.4e-18  Score=123.24  Aligned_cols=82  Identities=16%  Similarity=0.455  Sum_probs=69.1

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcC-CcEEEEEECCCcHH-HHHhcCCCCC--ccEEEEE-cCCeEEEEEcC------
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYT-DVQFIKIDVDWLPE-AAKAFDLIDV--LPTFVLV-KRGKEIDRVVG------  147 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~-~v~f~~vd~d~~~~-l~~~~~i~~~--~Ptiv~~-~~Gk~i~~~~g------  147 (162)
                      +|+||++||++|+.+.|.|+++.+.+. ++.|+.||++..++ ++..|++ ..  +||+++| ++|+++.++.|      
T Consensus        50 lv~F~a~WC~~C~~~~p~l~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~-~~~~~Pt~~~~d~~G~~~~~~~G~~~~~~  128 (164)
T 1sen_A           50 MVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPKDEDFSP-DGGYIPRILFLDPSGKVHPEIINENGNPS  128 (164)
T ss_dssp             EEEEECTTCHHHHHHHHHHHTCHHHHHHHTTSEEEEEEGGGSCSCGGGCT-TCSCSSEEEEECTTSCBCTTCCCTTSCTT
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHHHhhcCCeEEEEEecCCchHHHHHhcc-cCCcCCeEEEECCCCCEEEEEeCCCCccc
Confidence            999999999999999999998776554 37888888887766 7788877 55  9999999 89999988888      


Q ss_pred             -----CCHHHHHHHHHHHh
Q 031271          148 -----AKKDELQMKTEKRR  161 (162)
Q Consensus       148 -----~~~~~l~~~l~~~~  161 (162)
                           .+.++|+++|++++
T Consensus       129 ~~~~~~~~~~l~~~l~~~l  147 (164)
T 1sen_A          129 YKYFYVSAEQVVQGMKEAQ  147 (164)
T ss_dssp             STTCCCSHHHHHHHHHHHH
T ss_pred             hhcccCCHHHHHHHHHHHH
Confidence                 36888988888764

>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}

Probab=99.69  E-value=6.5e-16  Score=111.03  Aligned_cols=102  Identities=15%  Similarity=0.121  Sum_probs=87.2

Q ss_pred             cceeEEecCCCeeeeeC---ceEEEEEecCCChh-hhhhhHHHHHHHHhc------CCcEEEEEECCCc-----------
Q 031271           59 NEMVLNINDGGNVVFWV---LKVVIYYTAAWCGP-CKFIEPYVKDFAAMY------TDVQFIKIDVDWL-----------  117 (162)
Q Consensus        59 ~~~~~~~~~~~~~~~~~---k~vvv~F~a~wC~~-C~~~~~~l~~~~~~~------~~v~f~~vd~d~~-----------  117 (162)
                      |++.+.+.+|+.+..++   |+|+|+||++||++ |....|.|.++.++|      +++.++.|++|..           
T Consensus         7 p~f~l~~~~G~~~~l~~~~gk~vll~F~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~   86 (171)
T 2rli_A            7 GDFHLLDHRGRARCKADFRGQWVLMYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFITVDPERDDVEAMARYV   86 (171)
T ss_dssp             SCCEEEETTSCEEETTTTTTSEEEEEEECTTCSSSHHHHHHHHHHHHHHHHHSTTSCCEEEEEEESCSTTCCHHHHHHHH
T ss_pred             CCeEEEeCCCCEEeHHHhCCCEEEEEEEcCCCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCCCCHHHHHHHH
Confidence            78999999999887765   89999999999998 999999999999888      4699999988731           


Q ss_pred             -----------------HHHHHhcCCCCCcc---------------EEEEE-cCCeEEEEEcCC-CHHHHHHHHHHHh
Q 031271          118 -----------------PEAAKAFDLIDVLP---------------TFVLV-KRGKEIDRVVGA-KKDELQMKTEKRR  161 (162)
Q Consensus       118 -----------------~~l~~~~~i~~~~P---------------tiv~~-~~Gk~i~~~~g~-~~~~l~~~l~~~~  161 (162)
                                       ..+++.|++ ..+|               +++++ ++|+++.++.|. +.++|.+.|++++
T Consensus        87 ~~~~~~~~~l~~~~~~~~~~~~~~~v-~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll  163 (171)
T 2rli_A           87 QDFHPRLLGLTGSTKQVAQASHSYRV-YYNAGPKDEDQDYIVDHSIAIYLLNPDGLFTDYYGRSRSAEQISDSVRRHM  163 (171)
T ss_dssp             HTTCTTCCEEECCHHHHHHHHHHSCC-CCEECCCCSSCCCCEECCCEEEEECTTSCEEEEEESSCCHHHHHHHHHHHH
T ss_pred             HHcCCCeEEEeCCHHHHHHHHHHhCe-EEEecCCCCCCCeEEeccceEEEECCCCeEEEEECCCCCHHHHHHHHHHHH
Confidence                             257889999 9888               65555 899999999988 8888888888764

>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A

Probab=99.68  E-value=1.4e-16  Score=111.37  Aligned_cols=80  Identities=13%  Similarity=0.181  Sum_probs=72.7

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCC-cEEEEEECCCcHHHHHhcCCCCC--ccEEEEEcC--CeEEEEEc--CC-CH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDV--LPTFVLVKR--GKEIDRVV--GA-KK  150 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~-v~f~~vd~d~~~~l~~~~~i~~~--~Ptiv~~~~--Gk~i~~~~--g~-~~  150 (162)
                      +++||++ |++|+++.|.|++++++|.+ +.|+.+|+|+++.+++.||+ .+  +||++++++  |+.. +..  |. +.
T Consensus        27 ~v~f~a~-~~~c~~~~p~l~~~A~~~~gk~~f~~vd~d~~~~~a~~~gi-~~~~iPtl~i~~~~~g~~~-~~~~~g~~~~  103 (133)
T 2djk_A           27 AYIFAET-AEERKELSDKLKPIAEAQRGVINFGTIDAKAFGAHAGNLNL-KTDKFPAFAIQEVAKNQKF-PFDQEKEITF  103 (133)
T ss_dssp             EEEECSC-SSSHHHHHHHHHHHHHSSTTTSEEEEECTTTTGGGTTTTTC-CSSSSSEEEEECTTTCCBC-CCCSSSCCCH
T ss_pred             EEEEecC-hhhHHHHHHHHHHHHHHhCCeEEEEEEchHHhHHHHHHcCC-CcccCCEEEEEecCcCccc-CCCCccccCH
Confidence            9999999 89999999999999999976 99999999999999999999 99  999999986  7764 554  76 89


Q ss_pred             HHHHHHHHHHh
Q 031271          151 DELQMKTEKRR  161 (162)
Q Consensus       151 ~~l~~~l~~~~  161 (162)
                      +.|++||++++
T Consensus       104 ~~l~~fi~~~l  114 (133)
T 2djk_A          104 EAIKAFVDDFV  114 (133)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999999875

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*

Probab=99.68  E-value=3e-16  Score=132.30  Aligned_cols=82  Identities=18%  Similarity=0.338  Sum_probs=72.6

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCC----cEEEEEECC--CcHHHHHhcCCCCCccEEEEEc----CCeEEEEEcCC
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTD----VQFIKIDVD--WLPEAAKAFDLIDVLPTFVLVK----RGKEIDRVVGA  148 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~----v~f~~vd~d--~~~~l~~~~~i~~~~Ptiv~~~----~Gk~i~~~~g~  148 (162)
                      +|+|||+||++|+++.|.|+++++++++    +.|+.||++  ++++++++|+| .++||+++|+    +|+.+....|.
T Consensus        34 lV~FyA~WC~pCk~~~P~l~~la~~~~~~~~~v~~~~VD~d~d~~~~l~~~~~V-~~~PTl~~f~~g~~~G~~~~~~~g~  112 (519)
T 3t58_A           34 AVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEETNSAVCREFNI-AGFPTVRFFQAFTKNGSGATLPGAG  112 (519)
T ss_dssp             EEEEECTTSHHHHHHHHHHHHHHHHHGGGTTTEEEEEEETTSGGGHHHHHHTTC-CSBSEEEEECTTCCSCCCEEECCSS
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHHHhhCcCCcEEEEEEECCccccHHHHHHcCC-cccCEEEEEcCcccCCCceeEecCC
Confidence            9999999999999999999999998864    999999995  48999999999 9999999997    45555556555


Q ss_pred             -CHHHHHHHHHHHh
Q 031271          149 -KKDELQMKTEKRR  161 (162)
Q Consensus       149 -~~~~l~~~l~~~~  161 (162)
                       +.+.|+++|.+++
T Consensus       113 ~~~~~L~~~l~~~l  126 (519)
T 3t58_A          113 ANVQTLRMRLIDAL  126 (519)
T ss_dssp             CCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHH
Confidence             9999999998875

>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}

Probab=99.68  E-value=2.1e-16  Score=116.27  Aligned_cols=106  Identities=21%  Similarity=0.224  Sum_probs=89.6

Q ss_pred             eccccceeEE-ecCCCeeeeeC---c-eEEEEEecCCChhhhhhhHHHHHHHHhcCC--cEEEEEECC------------
Q 031271           55 IYCINEMVLN-INDGGNVVFWV---L-KVVIYYTAAWCGPCKFIEPYVKDFAAMYTD--VQFIKIDVD------------  115 (162)
Q Consensus        55 ~~~~~~~~~~-~~~~~~~~~~~---k-~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~--v~f~~vd~d------------  115 (162)
                      ....|++.+. +.+|+.+..++   + +|+|+||++||++|+.+.|.|.++.++|++  +.|+.|+++            
T Consensus        21 g~~~p~f~l~~~~~G~~~~l~~~~gk~~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~~~~~~~d~~~~  100 (196)
T 2ywi_A           21 GKQAPPFALTNVIDGNVVRLEDVKSDAATVIMFICNHCPFVKHVQHELVRLANDYMPKGVSFVAINSNDAEQYPEDSPEN  100 (196)
T ss_dssp             TCBCCCCEEEETTTCCEEEHHHHCCSSEEEEEECCSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEECSCTTTCGGGSHHH
T ss_pred             CCcCCceeeeecCCCCEEeHHHhCCCCeEEEEEeCCCCccHHHHHHHHHHHHHHHHhCCcEEEEEECCccccccccCHHH
Confidence            3457889999 99999886644   5 599999999999999999999999998864  999999984            


Q ss_pred             -----------------CcHHHHHhcCCCCCccEEEEE-cCCeEEEE---------EcCC-CHHHHHHHHHHHh
Q 031271          116 -----------------WLPEAAKAFDLIDVLPTFVLV-KRGKEIDR---------VVGA-KKDELQMKTEKRR  161 (162)
Q Consensus       116 -----------------~~~~l~~~~~i~~~~Ptiv~~-~~Gk~i~~---------~~g~-~~~~l~~~l~~~~  161 (162)
                                       ...++++.|++ ..+|+++++ ++|+++.+         +.|. +.++|++.|++++
T Consensus       101 ~~~~~~~~~~~~~~~~d~~~~~~~~~~v-~~~P~~~lid~~G~i~~~~~~~~~~~~~~g~~~~~~l~~~i~~ll  173 (196)
T 2ywi_A          101 MKKVAEELGYPFPYLYDETQEVAKAYDA-ACTPDFYIFDRDLKCVYRGQLDDSRPNNGIPVTGESIRAALDALL  173 (196)
T ss_dssp             HHHHHHHHTCCSCEEECSSCHHHHHHTC-CEESEEEEEETTCBEEEEECSSSCCTTTCCCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCceEEECCchHHHHHhCC-CCCCeEEEEcCCCeEEEccccCcccccccCccCHHHHHHHHHHHH
Confidence                             45578999999 999998888 79999988         3466 7889999888764

>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}

Probab=99.68  E-value=1.9e-16  Score=107.31  Aligned_cols=75  Identities=13%  Similarity=0.178  Sum_probs=67.9

Q ss_pred             EEEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHHH
Q 031271           78 VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQMK  156 (162)
Q Consensus        78 vvv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~~  156 (162)
                      +++.||++||++|+++.+.|++++++++ +.|..+|++++++++.+|++ . +|+++++.+|+.+.  .|. ++++|+++
T Consensus        31 ~vv~y~~~~C~~C~~a~~~L~~l~~e~~-i~~~~vDId~d~~l~~~ygv-~-VP~l~~~~dG~~v~--~g~~~~~~L~~~  105 (107)
T 2fgx_A           31 KLVVYGREGCHLCEEMIASLRVLQKKSW-FELEVINIDGNEHLTRLYND-R-VPVLFAVNEDKELC--HYFLDSDVIGAY  105 (107)
T ss_dssp             CEEEEECSSCHHHHHHHHHHHHHHHHSC-CCCEEEETTTCHHHHHHSTT-S-CSEEEETTTTEEEE--CSSCCCHHHHHH
T ss_pred             EEEEEeCCCChhHHHHHHHHHHHHHhcC-CeEEEEECCCCHHHHHHhCC-C-CceEEEEECCEEEE--ecCCCHHHHHHH
Confidence            3899999999999999999999999884 99999999999999999999 7 99999999999873  354 88999888


Q ss_pred             H
Q 031271          157 T  157 (162)
Q Consensus       157 l  157 (162)
                      |
T Consensus       106 L  106 (107)
T 2fgx_A          106 L  106 (107)
T ss_dssp             H
T ss_pred             h
Confidence            7

>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP}

Probab=99.68  E-value=1.2e-16  Score=107.93  Aligned_cols=71  Identities=14%  Similarity=0.334  Sum_probs=59.3

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECC----CcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVD----WLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDEL  153 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d----~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l  153 (162)
                      +|+|||+||++|+.+.|.|+++++.++   ++.++.+    .+++++++|+| .++||+++  +|+.   +.|. +.+.|
T Consensus        16 vV~F~A~WC~~C~~~~p~~~~~a~~~~---~v~~~~~~~~~~~~~l~~~~~V-~~~PT~~i--~G~~---~~G~~~~~~l   86 (106)
T 3kp8_A           16 GTMYGAYWCPHCQDQKELFGAAFDQVP---YVECSPNGPGTPQAQECTEAGI-TSYPTWII--NGRT---YTGVRSLEAL   86 (106)
T ss_dssp             CEEEECTTCHHHHHHHHHHGGGGGGSC---EEESCTTCTTSCCCHHHHHTTC-CSSSEEEE--TTEE---EESCCCHHHH
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHHhCC---EEEEecccccchhHHHHHHcCC-eEeCEEEE--CCEE---ecCCCCHHHH
Confidence            899999999999999999999988775   3333332    67899999999 99999877  8874   5677 89999


Q ss_pred             HHHHH
Q 031271          154 QMKTE  158 (162)
Q Consensus       154 ~~~l~  158 (162)
                      .+++.
T Consensus        87 ~~~~~   91 (106)
T 3kp8_A           87 AVASG   91 (106)
T ss_dssp             HHHHT
T ss_pred             HHHhC
Confidence            88874

>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A

Probab=99.67  E-value=6.5e-16  Score=110.19  Aligned_cols=103  Identities=17%  Similarity=0.186  Sum_probs=87.1

Q ss_pred             ccceeEEecCCCeeeeeC---ceEEEEEecCCChh-hhhhhHHHHHHHHhc------CCcEEEEEECCCc----------
Q 031271           58 INEMVLNINDGGNVVFWV---LKVVIYYTAAWCGP-CKFIEPYVKDFAAMY------TDVQFIKIDVDWL----------  117 (162)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~---k~vvv~F~a~wC~~-C~~~~~~l~~~~~~~------~~v~f~~vd~d~~----------  117 (162)
                      .|++.+.+.+|+.+..++   |+++|+||++||++ |....|.|.++.+++      +++.++.|++|..          
T Consensus         3 ap~f~l~~~~G~~~~l~~~~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~~~vv~vs~d~~~d~~~~~~~~   82 (164)
T 2ggt_A            3 GGPFSLTTHTGERKTDKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANY   82 (164)
T ss_dssp             CCCCEEEETTSCEEEGGGGTTCEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHSSSSCCEEEEEEESCTTTCCHHHHHHH
T ss_pred             CCCeEEEeCCCCEEeHHHcCCCEEEEEEEeCCCCchhHHHHHHHHHHHHHHhhccCCCcEEEEEEEeCCCCCCHHHHHHH
Confidence            478999999999887664   89999999999998 999999999998877      3688999988752          


Q ss_pred             ------------------HHHHHhcCCCCCcc---------------EEEEE-cCCeEEEEEcCC-CHHHHHHHHHHHh
Q 031271          118 ------------------PEAAKAFDLIDVLP---------------TFVLV-KRGKEIDRVVGA-KKDELQMKTEKRR  161 (162)
Q Consensus       118 ------------------~~l~~~~~i~~~~P---------------tiv~~-~~Gk~i~~~~g~-~~~~l~~~l~~~~  161 (162)
                                        ..+++.|++ ..+|               +++++ ++|+++.++.|. ++++|.+.|++++
T Consensus        83 ~~~~~~~~~~l~~~~d~~~~~~~~~~v-~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll  160 (164)
T 2ggt_A           83 VKEFSPKLVGLTGTREEVDQVARAYRV-YYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQNKRKGEIAASIATHM  160 (164)
T ss_dssp             HHTTCSSCEEEECCHHHHHHHHHTTTC-CEEEEEECTTSCEEEEECCEEEEECTTSCEEEEEETTCCHHHHHHHHHHHH
T ss_pred             HHHcCCCeEEEeCCHHHHHHHHHhcCe-EEEecCCCCCCCeeEeccceEEEECCCCeEEEEeCCCCCHHHHHHHHHHHH
Confidence                              137889999 9999               55555 899999999888 8899999888765

>1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A

Probab=99.67  E-value=1.5e-16  Score=104.08  Aligned_cols=74  Identities=18%  Similarity=0.201  Sum_probs=64.7

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCCCHHHHHHHHH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQMKTE  158 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~~~~~l~~~l~  158 (162)
                      ++.||++||++|+++.|.|++++.++    +.+||+|++++++.+|++ . +|++++ .+|+.+.  .+.+.++|+++|+
T Consensus         3 vv~f~a~~C~~C~~~~~~L~~~~~~~----~~~vdid~~~~l~~~~g~-~-vPtl~~-~~G~~v~--g~~~~~~L~~~l~   73 (87)
T 1ttz_A            3 LTLYQRDDCHLCDQAVEALAQARAGA----FFSVFIDDDAALESAYGL-R-VPVLRD-PMGRELD--WPFDAPRLRAWLD   73 (87)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHTTCCC----EEEEECTTCHHHHHHHTT-T-CSEEEC-TTCCEEE--SCCCHHHHHHHHH
T ss_pred             EEEEECCCCchHHHHHHHHHHHHHhh----eEEEECCCCHHHHHHhCC-C-cCeEEE-ECCEEEe--CCCCHHHHHHHHH
Confidence            78899999999999999999876543    789999999999999999 8 999988 9999885  3348999999998


Q ss_pred             HHh
Q 031271          159 KRR  161 (162)
Q Consensus       159 ~~~  161 (162)
                      +++
T Consensus        74 ~~~   76 (87)
T 1ttz_A           74 AAP   76 (87)
T ss_dssp             TCC
T ss_pred             HHH
Confidence            654

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=99.67  E-value=5.3e-16  Score=119.00  Aligned_cols=81  Identities=12%  Similarity=0.171  Sum_probs=73.1

Q ss_pred             ceEEEEEecCCChhhhhhhHHHHHHHHhc-----CCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-C
Q 031271           76 LKVVIYYTAAWCGPCKFIEPYVKDFAAMY-----TDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-K  149 (162)
Q Consensus        76 k~vvv~F~a~wC~~C~~~~~~l~~~~~~~-----~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~  149 (162)
                      +.+++.||++||++|+.+.|.|++++..+     +++.+..||++.+++++++|+| .++||+++  +|+.+  +.|. +
T Consensus       139 ~~~vv~F~a~wC~~C~~~~p~l~~la~~~~~~~~~~v~~~~vd~~~~~~~~~~~~V-~~vPt~~i--~G~~~--~~G~~~  213 (243)
T 2hls_A          139 RVHIETIITPSCPYCPYAVLLAHMFAYEAWKQGNPVILSEAVEAYENPDIADKYGV-MSVPSIAI--NGYLV--FVGVPY  213 (243)
T ss_dssp             CEEEEEEECSSCSSHHHHHHHHHHHHHHHHHTTCCCEEEEEEETTTCHHHHHHTTC-CSSSEEEE--TTEEE--EESCCC
T ss_pred             CcEEEEEECCCCCCcHHHHHHHHHHHHHcccccCCcEEEEEEECccCHHHHHHcCC-eeeCeEEE--CCEEE--EeCCCC
Confidence            45589999999999999999999999988     6799999999999999999999 99999988  88865  6677 8


Q ss_pred             HHHHHHHHHHHh
Q 031271          150 KDELQMKTEKRR  161 (162)
Q Consensus       150 ~~~l~~~l~~~~  161 (162)
                      .++|+++|.+++
T Consensus       214 ~~~l~~~l~~~~  225 (243)
T 2hls_A          214 EEDFLDYVKSAA  225 (243)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999998865

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=99.67  E-value=2.6e-16  Score=118.66  Aligned_cols=83  Identities=18%  Similarity=0.237  Sum_probs=74.8

Q ss_pred             CceE-EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHH
Q 031271           75 VLKV-VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDE  152 (162)
Q Consensus        75 ~k~v-vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~  152 (162)
                      ++++ +++||++||++|+.+.|.++++++.++++.|+.||++.+++++++|+| .++||+++  +|+ +.++.|. +.+.
T Consensus       135 ~~~~~~v~F~a~wC~~C~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v-~~~Pt~~~--~G~-~~~~~G~~~~~~  210 (229)
T 2ywm_A          135 DIPIEIWVFVTTSCGYCPSAAVMAWDFALANDYITSKVIDASENQDLAEQFQV-VGVPKIVI--NKG-VAEFVGAQPENA  210 (229)
T ss_dssp             CSCEEEEEEECTTCTTHHHHHHHHHHHHHHCTTEEEEEEEGGGCHHHHHHTTC-CSSSEEEE--GGG-TEEEESCCCHHH
T ss_pred             CCCeEEEEEECCCCcchHHHHHHHHHHHHHCCCeEEEEEECCCCHHHHHHcCC-cccCEEEE--CCE-EEEeeCCCCHHH
Confidence            3444 788999999999999999999999998899999999999999999999 99999988  888 5667888 8899


Q ss_pred             HHHHHHHHh
Q 031271          153 LQMKTEKRR  161 (162)
Q Consensus       153 l~~~l~~~~  161 (162)
                      |.++|++++
T Consensus       211 l~~~l~~~~  219 (229)
T 2ywm_A          211 FLGYIMAVY  219 (229)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999998764

>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A

Probab=99.67  E-value=3.7e-16  Score=109.60  Aligned_cols=88  Identities=22%  Similarity=0.368  Sum_probs=76.2

Q ss_pred             cccc-eeEEecCCCeeeeeC---ceEEEEEecCCChhhhhhhHHHHHHHHhcC---CcEEEEEECCCc------------
Q 031271           57 CINE-MVLNINDGGNVVFWV---LKVVIYYTAAWCGPCKFIEPYVKDFAAMYT---DVQFIKIDVDWL------------  117 (162)
Q Consensus        57 ~~~~-~~~~~~~~~~~~~~~---k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~---~v~f~~vd~d~~------------  117 (162)
                      ..|+ +.+.+.+|+.+..++   |+|+|+||++||++|+.+.|.|+++.++|+   ++.++.|++|..            
T Consensus         6 ~~P~~f~l~~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~   85 (144)
T 1i5g_A            6 FFPYSTNVLKGAAADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMP   85 (144)
T ss_dssp             SCSSCSEEEETTEEEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCS
T ss_pred             hCCCceEEEcCCCCEecHHHcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCC
Confidence            4567 899999999886654   899999999999999999999999999987   488999988863            


Q ss_pred             ------------HHHHHhcCCCCCccEEEEE--cCCeEEEEE
Q 031271          118 ------------PEAAKAFDLIDVLPTFVLV--KRGKEIDRV  145 (162)
Q Consensus       118 ------------~~l~~~~~i~~~~Ptiv~~--~~Gk~i~~~  145 (162)
                                  ..++++|++ ..+|+++++  ++|+++.+.
T Consensus        86 ~~~~~~~~~d~~~~~~~~~~v-~~~P~~~lid~~~G~i~~~~  126 (144)
T 1i5g_A           86 WLALPFEDRKGMEFLTTGFDV-KSIPTLVGVEADSGNIITTQ  126 (144)
T ss_dssp             SEECCTTCHHHHHHHHHHTTC-CSSSEEEEEETTTCCEEESC
T ss_pred             ccccccCchHHHHHHHHHcCC-CCCCEEEEEECCCCcEEecc
Confidence                        478999999 999999888  489988765

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=99.66  E-value=2.5e-16  Score=137.80  Aligned_cols=82  Identities=10%  Similarity=0.150  Sum_probs=69.9

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCC-cEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHHH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQMK  156 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~-v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~~  156 (162)
                      +|+||++||++|+.+.|.|+++++.+++ +.|+.||++.+++++++|+| .++||+++|++|+.+.++.|. +.+.|.++
T Consensus       137 lv~Fya~wC~~C~~~~p~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~v-~~~Pt~~~~~~g~~~~~~~G~~~~~~l~~~  215 (780)
T 3apo_A          137 FVNFYSPGSSHSHDLAPTWREFAKEVDGLLRIGAVNCGDDRMLCRMKGV-NSYPSLFIFRSGMAAVKYNGDRSKESLVAF  215 (780)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTCSSCC---------CEEEEECTTSCCEECCSCSCHHHHHHH
T ss_pred             EEEEeCCCCcchhHhhHHHHHHHHHhcCceEEEEEeCCCcHHHHHHcCC-ceeeeEEEEeCCcEeeEecCCCCHHHHHHH
Confidence            9999999999999999999999999976 99999999999999999999 999999999999988889998 89999999


Q ss_pred             HHHHh
Q 031271          157 TEKRR  161 (162)
Q Consensus       157 l~~~~  161 (162)
                      +.+++
T Consensus       216 l~~~~  220 (780)
T 3apo_A          216 AMQHV  220 (780)
T ss_dssp             HHTTS
T ss_pred             HHHhc
Confidence            98764

>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A

Probab=99.66  E-value=4.4e-16  Score=109.53  Aligned_cols=88  Identities=22%  Similarity=0.421  Sum_probs=75.6

Q ss_pred             cccc-eeEEecCCCeeeeeC---ceEEEEEecCCChhhhhhhHHHHHHHHhcC---CcEEEEEECCCc------------
Q 031271           57 CINE-MVLNINDGGNVVFWV---LKVVIYYTAAWCGPCKFIEPYVKDFAAMYT---DVQFIKIDVDWL------------  117 (162)
Q Consensus        57 ~~~~-~~~~~~~~~~~~~~~---k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~---~v~f~~vd~d~~------------  117 (162)
                      ..|+ +.+.+.+| .+..++   |+++|+||++||++|+.+.|.|+++.++|+   ++.++.|++|..            
T Consensus         7 ~~P~~f~l~~~~g-~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~   85 (146)
T 1o8x_A            7 YLPGIEKLRRGDG-EVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMP   85 (146)
T ss_dssp             TSTTCCEEEETTE-EEEGGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCS
T ss_pred             hCCCceEEEcCCC-CCcHHHhCCCEEEEEEEccCCHHHHHHHHHHHHHHHHhhhcCCeEEEEEeCCCCHHHHHHHHHHCC
Confidence            4577 89999999 876654   899999999999999999999999999987   488999988863            


Q ss_pred             ------------HHHHHhcCCCCCccEEEEEc--CCeEEEEEc
Q 031271          118 ------------PEAAKAFDLIDVLPTFVLVK--RGKEIDRVV  146 (162)
Q Consensus       118 ------------~~l~~~~~i~~~~Ptiv~~~--~Gk~i~~~~  146 (162)
                                  ..++++|++ .++|+++++.  +|+++.+..
T Consensus        86 ~~~~~~~~~d~~~~~~~~~~v-~~~Pt~~lid~~~G~i~~~~~  127 (146)
T 1o8x_A           86 WLAVPFAQSEAVQKLSKHFNV-ESIPTLIGVDADSGDVVTTRA  127 (146)
T ss_dssp             SEECCGGGHHHHHHHHHHTTC-CSSSEEEEEETTTCCEEESCH
T ss_pred             ceeeccchhhHHHHHHHHhCC-CCCCEEEEEECCCCeEEEecc
Confidence                        468999999 9999999885  899887653

>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}

Probab=99.66  E-value=7.7e-16  Score=116.00  Aligned_cols=109  Identities=16%  Similarity=0.210  Sum_probs=90.6

Q ss_pred             eeeeccccceeEEecCCCeeeeeC---c-eEEEEEecCCChhhhhhhHHHHHHHHhcCC--cEEEEEECC----------
Q 031271           52 FCLIYCINEMVLNINDGGNVVFWV---L-KVVIYYTAAWCGPCKFIEPYVKDFAAMYTD--VQFIKIDVD----------  115 (162)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~---k-~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~--v~f~~vd~d----------  115 (162)
                      .......|+|.+.+.+|+.+..++   | +|||+||++||++|+.+.|.|+++.++|++  +.|+.|+++          
T Consensus        32 l~~G~~aP~f~l~~~~G~~v~l~~~~gk~~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Vs~d~~~~~~~d~~  111 (218)
T 3u5r_E           32 ITLGTRAADFVLPDAGGNLFTLAEFKDSPALLVAFISNRCPFVVLIREALAKFAGDYAGQGLAVVAINSNDAQAFPEETL  111 (218)
T ss_dssp             CCTTCBCCCCCEECTTCCEECGGGGTTCSEEEEEECCSSCHHHHTTHHHHHHHHHHHTTTTEEEEEEECSCTTTCGGGSH
T ss_pred             CCCCCcCCCcEeECCCCCEEeHHHhCCCCeEEEEEECCCCccHHHHHHHHHHHHHHHHhCCcEEEEEECCcccccccCCH
Confidence            344556789999999999887654   6 499999999999999999999999999965  999999983          


Q ss_pred             -------------------CcHHHHHhcCCCCCccEEEEE-cCCeEEEEEc---------CC-CHHHHHHHHHHHh
Q 031271          116 -------------------WLPEAAKAFDLIDVLPTFVLV-KRGKEIDRVV---------GA-KKDELQMKTEKRR  161 (162)
Q Consensus       116 -------------------~~~~l~~~~~i~~~~Ptiv~~-~~Gk~i~~~~---------g~-~~~~l~~~l~~~~  161 (162)
                                         ....+++.|++ ..+|+++++ ++|+++.+..         +. +.+.|++.|++++
T Consensus       112 ~~~~~~~~~~~~~~~~l~D~~~~~~~~~~v-~~~P~~~liD~~G~i~~~g~~d~~~~~~~~~~~~~~l~~~i~~ll  186 (218)
T 3u5r_E          112 ERVGAEVKAYGYGFPYLKDASQSVAKAYGA-ACTPDFFLYDRERRLVYHGQFDDARPGNGKDVTGADLRAAVDAVL  186 (218)
T ss_dssp             HHHHHHHHHHTCCSCEEECTTCHHHHHHTC-CEESEEEEECTTCBEEEEECSSSCCTTSCCCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCccEEECCccHHHHHcCC-CCCCeEEEECCCCcEEEeccccccccccccccCHHHHHHHHHHHH
Confidence                               45678999999 999999888 8999986532         12 5788999888765

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=99.65  E-value=4.7e-16  Score=116.85  Aligned_cols=81  Identities=21%  Similarity=0.388  Sum_probs=72.3

Q ss_pred             EEEEecC-CChhhhhhhHHHHHHHHhcCCcEEEEEECCC--cHHHHHhcCCCCCccEEEEEcCCeEE-EEEcCC-CHHHH
Q 031271           79 VIYYTAA-WCGPCKFIEPYVKDFAAMYTDVQFIKIDVDW--LPEAAKAFDLIDVLPTFVLVKRGKEI-DRVVGA-KKDEL  153 (162)
Q Consensus        79 vv~F~a~-wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~--~~~l~~~~~i~~~~Ptiv~~~~Gk~i-~~~~g~-~~~~l  153 (162)
                      +++||++ ||++|+.+.|.|+++++..+++.|+.||++.  +++++++|+| .++||+++|++|+.. .++.|. +.+.+
T Consensus        26 lv~f~~~~~C~~C~~~~~~~~~la~~~~~v~~~~vd~~~~~~~~~~~~~~v-~~~Pt~~~~~~g~~~~~~~~G~~~~~~l  104 (226)
T 1a8l_A           26 LIVFVRKDHCQYCDQLKQLVQELSELTDKLSYEIVDFDTPEGKELAKRYRI-DRAPATTITQDGKDFGVRYFGLPAGHEF  104 (226)
T ss_dssp             EEEEECSSSCTTHHHHHHHHHHHHTTCTTEEEEEEETTSHHHHHHHHHTTC-CSSSEEEEEETTBCCSEEEESCCCTTHH
T ss_pred             EEEEecCCCCchhHHHHHHHHHHHhhCCceEEEEEeCCCcccHHHHHHcCC-CcCceEEEEcCCceeeEEEeccCcHHHH
Confidence            8999999 9999999999999999876679999999999  9999999999 999999999998764 677777 77778


Q ss_pred             HHHHHHH
Q 031271          154 QMKTEKR  160 (162)
Q Consensus       154 ~~~l~~~  160 (162)
                      .+++..+
T Consensus       105 ~~~l~~~  111 (226)
T 1a8l_A          105 AAFLEDI  111 (226)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8877664

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A

Probab=99.65  E-value=6.3e-16  Score=128.39  Aligned_cols=86  Identities=20%  Similarity=0.409  Sum_probs=77.2

Q ss_pred             eCceEEEEEecCCChhhhhhhHHHHHHHHhcCC---cEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeE--EEEEcCC
Q 031271           74 WVLKVVIYYTAAWCGPCKFIEPYVKDFAAMYTD---VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKE--IDRVVGA  148 (162)
Q Consensus        74 ~~k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~---v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~--i~~~~g~  148 (162)
                      ++++|+|+|||+||++|+.+.|.|+++++.+++   +.|+.+|++.+ +++++|+| .++||+++|++|+.  ..++.|.
T Consensus       369 ~~k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~~v~~~~id~~~~-~~~~~~~v-~~~Pt~~~~~~~~~~~~~~~~G~  446 (481)
T 3f8u_A          369 ENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATAN-DVPSPYEV-RGFPTIYFSPANKKLNPKKYEGG  446 (481)
T ss_dssp             TTCEEEEEEECTTBHHHHHHHHHHHHHHHHTTTCSSEEEEEEETTSS-CCCTTCCC-CSSSEEEEECTTCTTSCEECCSC
T ss_pred             CCCcEEEEEecCcChhHHHhhHHHHHHHHHhccCCCEEEEEEECCch-hhHhhCCC-cccCEEEEEeCCCeEeeeEeCCC
Confidence            468889999999999999999999999999864   99999999998 88899999 99999999977664  5677787


Q ss_pred             -CHHHHHHHHHHHh
Q 031271          149 -KKDELQMKTEKRR  161 (162)
Q Consensus       149 -~~~~l~~~l~~~~  161 (162)
                       +.+.|.++|+++.
T Consensus       447 ~~~~~l~~~l~~~~  460 (481)
T 3f8u_A          447 RELSDFISYLQREA  460 (481)
T ss_dssp             CSHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHhc
Confidence             9999999999874

>3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei}

Probab=99.65  E-value=2e-16  Score=115.88  Aligned_cols=66  Identities=14%  Similarity=0.200  Sum_probs=57.5

Q ss_pred             EEEEecCCChhhhhhhH-HH--HHHHHhcC-CcEEEEEECCCcHHHHHhc--------CCCCCccEEEEE-cCCeEEEEE
Q 031271           79 VIYYTAAWCGPCKFIEP-YV--KDFAAMYT-DVQFIKIDVDWLPEAAKAF--------DLIDVLPTFVLV-KRGKEIDRV  145 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~-~l--~~~~~~~~-~v~f~~vd~d~~~~l~~~~--------~i~~~~Ptiv~~-~~Gk~i~~~  145 (162)
                      +|+||++||++|+.|.+ .+  .++++.+. ++.+++||.++.+++.+.|        |+ .++|+++++ ++|+++...
T Consensus        43 lvdF~A~WC~~Ck~m~~~~f~~~~va~~l~~~fv~ikVD~de~~~l~~~y~~~~q~~~gv-~g~Pt~v~l~~dG~~v~~~  121 (173)
T 3ira_A           43 FLSIGYSTCHWCHMMAHESFEDEEVAGLMNEAFVSIKVDREERPDIDNIYMTVCQIILGR-GGWPLNIIMTPGKKPFFAG  121 (173)
T ss_dssp             EEEEECTTCHHHHHHHHHTTTCHHHHHHHHHHCEEEEEETTTCHHHHHHHHHHHHHHHSC-CCSSEEEEECTTSCEEEEE
T ss_pred             EEecccchhHhhccccccccCCHHHHHHHHhcCceeeeCCcccCcHHHHHHHHHHHHcCC-CCCcceeeECCCCCceeee
Confidence            99999999999999998 33  56666654 4999999999999999988        99 999999999 599998864

>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron}

Probab=99.46  E-value=1e-17  Score=119.49  Aligned_cols=104  Identities=21%  Similarity=0.349  Sum_probs=83.2

Q ss_pred             ccccceeEEecCCCeeeeeC---ceEEEEEecCCChhhhhhhHHHHH-HHHhcC---CcEEEEEECCCcHHHHH------
Q 031271           56 YCINEMVLNINDGGNVVFWV---LKVVIYYTAAWCGPCKFIEPYVKD-FAAMYT---DVQFIKIDVDWLPEAAK------  122 (162)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~---k~vvv~F~a~wC~~C~~~~~~l~~-~~~~~~---~v~f~~vd~d~~~~l~~------  122 (162)
                      ...|++.+.+.+|+.+..++   |+++|+||++||++|+.+.|.|.+ +.+++.   ++.++.|++|..++..+      
T Consensus        11 ~~~p~f~l~~~~g~~~~l~~~~gk~vll~f~a~~C~~C~~~~~~l~~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~   90 (159)
T 2ls5_A           11 EMAPDFTITLTDGKQVTLSSLRGKVVMLQFTASWCGVCRKEMPFIEKDIWLKHKDNADFALIGIDRDEPLEKVLAFAKST   90 (159)
Confidence            34678889999998775544   899999999999999999999998 887776   48899998876544333      


Q ss_pred             ----------------hcC--CCCCccEEEEE-cCCeEEEEEcCCCHHHHHHHHHHH
Q 031271          123 ----------------AFD--LIDVLPTFVLV-KRGKEIDRVVGAKKDELQMKTEKR  160 (162)
Q Consensus       123 ----------------~~~--i~~~~Ptiv~~-~~Gk~i~~~~g~~~~~l~~~l~~~  160 (162)
                                      .|+  + .++|+++++ ++|+++.+..|.+++.+.++|++.
T Consensus        91 ~~~~~~~~d~~~~~~~~~~~~~-~~~P~~~lid~~G~i~~~~~g~~~~~l~~~l~~l  146 (159)
T 2ls5_A           91 GVTYPLGLDPGADIFAKYALRD-AGITRNVLIDREGKIVKLTRLYNEEEFASLVQQI  146 (159)
Confidence                            334  5 669998888 899999998888777777777654

>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major}

Probab=99.65  E-value=6.4e-16  Score=111.60  Aligned_cols=88  Identities=19%  Similarity=0.401  Sum_probs=74.6

Q ss_pred             cccce-eEEecCCCeeeeeC---ceEEEEEecCCChhhhhhhHHHHHHHHhcC---CcEEEEEECCCc------------
Q 031271           57 CINEM-VLNINDGGNVVFWV---LKVVIYYTAAWCGPCKFIEPYVKDFAAMYT---DVQFIKIDVDWL------------  117 (162)
Q Consensus        57 ~~~~~-~~~~~~~~~~~~~~---k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~---~v~f~~vd~d~~------------  117 (162)
                      ..|++ .+.+.+| .+..++   |+|||+||++||++|+.+.|.|.++.++|+   ++.++.|++|..            
T Consensus        27 ~~P~f~~l~~~~g-~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~  105 (165)
T 3s9f_A           27 HLGEALKLRKQAD-TADMDSLSGKTVFFYFSASWCPPCRGFTPQLVEFYEKHHDSKNFEIILASWDEEEDDFNAYYAKMP  105 (165)
T ss_dssp             HHHHTSCEEETTE-EECSGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCS
T ss_pred             cCCcceeeecCCC-cccHHHcCCCEEEEEEECCcChhHHHHHHHHHHHHHHhccCCCeEEEEEecCCCHHHHHHHHHhCC
Confidence            35666 7888888 775543   899999999999999999999999999986   488999998866            


Q ss_pred             ------------HHHHHhcCCCCCccEEEEE-cC-CeEEEEEc
Q 031271          118 ------------PEAAKAFDLIDVLPTFVLV-KR-GKEIDRVV  146 (162)
Q Consensus       118 ------------~~l~~~~~i~~~~Ptiv~~-~~-Gk~i~~~~  146 (162)
                                  ..+++.|++ ..+|+++++ ++ |+++.+..
T Consensus       106 ~~~~~~~~~~~~~~l~~~~~v-~~~Pt~~lid~~~G~iv~~~~  147 (165)
T 3s9f_A          106 WLSIPFANRNIVEALTKKYSV-ESIPTLIGLNADTGDTVTTRA  147 (165)
T ss_dssp             SEECCTTCHHHHHHHHHHTTC-CSSSEEEEEETTTCCEEESCH
T ss_pred             CcccccCchhHHHHHHHHcCC-CCCCEEEEEeCCCCEEEeccc
Confidence                        678999999 999999988 55 99987653

>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis}

Probab=99.65  E-value=9e-16  Score=123.80  Aligned_cols=107  Identities=15%  Similarity=0.108  Sum_probs=91.6

Q ss_pred             eecccccee-----EEecCCCeeeeeC---ceEEEEEecCCChhhhhhhHHHHHHHHhcCC--cEEEEEECC--------
Q 031271           54 LIYCINEMV-----LNINDGGNVVFWV---LKVVIYYTAAWCGPCKFIEPYVKDFAAMYTD--VQFIKIDVD--------  115 (162)
Q Consensus        54 ~~~~~~~~~-----~~~~~~~~~~~~~---k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~--v~f~~vd~d--------  115 (162)
                      .....|+|.     +.+.+|+.+..++   |+|||+||++||++|+.+.|.|.++.++|++  +.|+.|+++        
T Consensus        53 vG~~aPdF~~~~~wL~d~dG~~vsLsdl~GK~vLl~F~atwC~~C~~~~p~L~~l~~~~~~~~v~vi~Vs~d~~~~~d~~  132 (352)
T 2hyx_A           53 SCGTAPDLKGITGWLNTPGNKPIDLKSLRGKVVLIDFWAYSCINCQRAIPHVVGWYQAYKDSGLAVIGVHTPEYAFEKVP  132 (352)
T ss_dssp             CCCBCCCCCSCCEEESSGGGCCCCGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEECCSSGGGGCH
T ss_pred             CCCcCCCccccccccCCCCCCEEcHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHhhcCCeEEEEEECCcccccCCH
Confidence            344578888     8888998876554   8999999999999999999999999999864  999999864        


Q ss_pred             -------------------CcHHHHHhcCCCCCccEEEEE-cCCeEEEEEcCC-CHHHHHHHHHHHh
Q 031271          116 -------------------WLPEAAKAFDLIDVLPTFVLV-KRGKEIDRVVGA-KKDELQMKTEKRR  161 (162)
Q Consensus       116 -------------------~~~~l~~~~~i~~~~Ptiv~~-~~Gk~i~~~~g~-~~~~l~~~l~~~~  161 (162)
                                         ....+++.|++ ..+|+++++ ++|+++.++.|. +.+.|+++|++++
T Consensus       133 ~~~~~~~~~~~l~fpv~~D~~~~l~~~ygV-~~~Pt~~lID~~G~Iv~~~~G~~~~~~l~~~I~~lL  198 (352)
T 2hyx_A          133 GNVAKGAANLGISYPIALDNNYATWTNYRN-RYWPAEYLIDATGTVRHIKFGEGDYNVTETLVRQLL  198 (352)
T ss_dssp             HHHHHHHHHHTCCSCEEECTTSHHHHHTTC-CEESEEEEECTTSBEEEEEESBCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCccEEeCCcHHHHHHcCC-CccCEEEEEeCCCeEEEEEcCCCCHHHHHHHHHHHH
Confidence                               23578999999 999998888 899999999998 8999999988764

>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1

Probab=99.64  E-value=1e-15  Score=96.40  Aligned_cols=71  Identities=21%  Similarity=0.313  Sum_probs=63.1

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcC-CcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC--CHHHHHH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYT-DVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA--KKDELQM  155 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~-~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~--~~~~l~~  155 (162)
                      .|.||++||++|+.+.|.+++++++++ ++.++.+|   +++++++|++ .++||+++  +|+.+.+  |.  +.++|++
T Consensus         3 ~v~f~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~v~---~~~~~~~~~v-~~~Pt~~~--~G~~~~~--G~~~~~~~l~~   74 (77)
T 1ilo_A            3 KIQIYGTGCANCQMLEKNAREAVKELGIDAEFEKIK---EMDQILEAGL-TALPGLAV--DGELKIM--GRVASKEEIKK   74 (77)
T ss_dssp             EEEEECSSSSTTHHHHHHHHHHHHHTTCCEEEEEEC---SHHHHHHHTC-SSSSCEEE--TTEEEEC--SSCCCHHHHHH
T ss_pred             EEEEEcCCChhHHHHHHHHHHHHHHcCCceEEEEec---CHHHHHHCCC-CcCCEEEE--CCEEEEc--CCCCCHHHHHH
Confidence            588999999999999999999999987 48888888   7899999999 99999988  9998877  65  6888887


Q ss_pred             HH
Q 031271          156 KT  157 (162)
Q Consensus       156 ~l  157 (162)
                      +|
T Consensus        75 ~l   76 (77)
T 1ilo_A           75 IL   76 (77)
T ss_dssp             HC
T ss_pred             Hh
Confidence            65

>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A*

Probab=99.64  E-value=3.9e-16  Score=129.75  Aligned_cols=60  Identities=12%  Similarity=0.322  Sum_probs=56.6

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcC---------CcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCC
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYT---------DVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRG  139 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~---------~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~G  139 (162)
                      +|+|||+||++|+.+.|.++++++.|+         .+.|+.||++.+++++++|+| .++||+++|++|
T Consensus        46 lV~FyA~WC~pCk~~~P~l~~la~~~~~~~g~~~~~~v~f~~VD~d~~~~la~~y~V-~~~PTlilf~~g  114 (470)
T 3qcp_A           46 IVLFYNDGCGACRRYASTFSKFAGGLKVEHGKDALQIATAAAVNCASEVDLCRKYDI-NFVPRLFFFYPR  114 (470)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHTSCCSSCSSGGGGCEEEEEETTTCHHHHHHTTC-CSSCEEEEEEES
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHHHHhhhcccccCceEEEEEEECCCCHHHHHHcCC-CccCeEEEEECC
Confidence            999999999999999999999999996         399999999999999999999 999999999543

>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=99.64  E-value=2.8e-15  Score=107.43  Aligned_cols=103  Identities=11%  Similarity=0.015  Sum_probs=85.0

Q ss_pred             ccccceeEEecCCCeeeeeC---ce-EEEEEe-cCCChhhhhhhHHHHHHHHhcCC--cEEEEEECC-------------
Q 031271           56 YCINEMVLNINDGGNVVFWV---LK-VVIYYT-AAWCGPCKFIEPYVKDFAAMYTD--VQFIKIDVD-------------  115 (162)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~---k~-vvv~F~-a~wC~~C~~~~~~l~~~~~~~~~--v~f~~vd~d-------------  115 (162)
                      ...|++.+.+.+|+.+..++   |+ |+|+|| ++||++|....|.|.++.++|++  +.++.|+.|             
T Consensus         6 ~~~P~f~l~~~~G~~~~l~~~~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~   85 (161)
T 3drn_A            6 DKAPLFEGIADNGEKISLSDYIGKHNIVLYFYPKDDTPGSTREASAFRDNWDLLKDYDVVVIGVSSDDINSHKRFKEKYK   85 (161)
T ss_dssp             SBCCCCEEEETTSCEEEGGGTTTTSEEEEEECSCTTCHHHHHHHHHHHHTHHHHHTTCEEEEEEESCCHHHHHHHHHHTT
T ss_pred             CcCCCeEeecCCCCEEEHHHhcCCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHHHhC
Confidence            34688999999999887655   65 999999 99999999999999999999854  899999887             


Q ss_pred             --------CcHHHHHhcCCCCC----ccEEEEE-cCCeEEEEEcC-C-C---HHHHHHHHHH
Q 031271          116 --------WLPEAAKAFDLIDV----LPTFVLV-KRGKEIDRVVG-A-K---KDELQMKTEK  159 (162)
Q Consensus       116 --------~~~~l~~~~~i~~~----~Ptiv~~-~~Gk~i~~~~g-~-~---~~~l~~~l~~  159 (162)
                              ....+++.|++ .+    +|+++++ ++|+++.++.| . .   .+++.+.|++
T Consensus        86 ~~~~~~~d~~~~~~~~~~v-~~~~~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~il~~l~~  146 (161)
T 3drn_A           86 LPFILVSDPDKKIRELYGA-KGFILPARITFVIDKKGIIRHIYNSQMNPANHVNEALKALKQ  146 (161)
T ss_dssp             CCSEEEECTTSHHHHHTTC-CCSSSCCCEEEEECTTSBEEEEEECSSCTTHHHHHHHHHHHH
T ss_pred             CCceEEECCcHHHHHHcCC-CCcCcccceEEEECCCCEEEEEEecCCCCCcCHHHHHHHHHH
Confidence                    45678999999 89    9987777 79999999999 3 3   3445555544

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A

Probab=99.63  E-value=1.5e-15  Score=121.70  Aligned_cols=86  Identities=21%  Similarity=0.363  Sum_probs=75.9

Q ss_pred             eeCceEEEEEecCCChhhhhhhHHHHHHHHhcCC---cEEEEEECCCcHHHHHhcCCCCCccEEEEEcCC--eEEEEEcC
Q 031271           73 FWVLKVVIYYTAAWCGPCKFIEPYVKDFAAMYTD---VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRG--KEIDRVVG  147 (162)
Q Consensus        73 ~~~k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~---v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~G--k~i~~~~g  147 (162)
                      ..+++++|+||++||++|+.+.|.|+++++.+++   +.++.+|++.+.  +.+|+| .++||+++|++|  +...++.|
T Consensus       265 ~~~k~~lv~f~a~wC~~C~~~~p~~~~la~~~~~~~~v~~~~vd~~~~~--~~~~~v-~~~Pt~~~~~~~~~~~~~~~~G  341 (361)
T 3uem_A          265 DEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANE--VEAVKV-HSFPTLKFFPASADRTVIDYNG  341 (361)
T ss_dssp             CTTCEEEEEEECTTCHHHHHHHHHHHHHHHHTTTCSSEEEEEEETTTCB--CSSCCC-CSSSEEEEECSSSSCCCEECCS
T ss_pred             cCCCcEEEEEecCcCHhHHHHHHHHHHHHHHhccCCcEEEEEEECCccc--hhhcCC-cccCeEEEEECCCCcceeEecC
Confidence            4568889999999999999999999999999865   899999999886  689999 999999999544  66777888


Q ss_pred             C-CHHHHHHHHHHHh
Q 031271          148 A-KKDELQMKTEKRR  161 (162)
Q Consensus       148 ~-~~~~l~~~l~~~~  161 (162)
                      . +.+.|.++|+++.
T Consensus       342 ~~~~~~l~~~l~~~~  356 (361)
T 3uem_A          342 ERTLDGFKKFLESGG  356 (361)
T ss_dssp             CSSHHHHHHHHTTTS
T ss_pred             CCCHHHHHHHHHhcC
Confidence            7 9999999998764

>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A

Probab=99.63  E-value=3.4e-15  Score=106.91  Aligned_cols=106  Identities=11%  Similarity=0.128  Sum_probs=83.8

Q ss_pred             eccccceeEEecCCCeeeeeC---ceEEEEEecCCChhhhhhhHHHHHHHHhcCC--cEEEEEECCC-------c----H
Q 031271           55 IYCINEMVLNINDGGNVVFWV---LKVVIYYTAAWCGPCKFIEPYVKDFAAMYTD--VQFIKIDVDW-------L----P  118 (162)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~---k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~--v~f~~vd~d~-------~----~  118 (162)
                      ....|++.+.+.+|+.+..++   |+|+|+||++||++|+...|.|.++.++|++  +.++.|++|.       .    .
T Consensus         8 g~~~p~f~l~~~~G~~~~l~~~~gk~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~   87 (169)
T 2v1m_A            8 WNSIYEFTVKDINGVDVSLEKYRGHVCLIVNVACKCGATDKNYRQLQEMHTRLVGKGLRILAFPCNQFGGQEPWAEAEIK   87 (169)
T ss_dssp             CCSGGGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHH
T ss_pred             CcccccceeecCCCCCccHHHcCCCEEEEEEeeccCCchHHHHHHHHHHHHHhhcCCeEEEEEECCccCCCCCCCHHHHH
Confidence            345788999999999887655   8999999999999999999999999998864  9999998763       1    1


Q ss_pred             HH-HHhc-----------------------------C-----CCCCccEEEEE-cCCeEEEEEcCC-CHHHHHHHHHHHh
Q 031271          119 EA-AKAF-----------------------------D-----LIDVLPTFVLV-KRGKEIDRVVGA-KKDELQMKTEKRR  161 (162)
Q Consensus       119 ~l-~~~~-----------------------------~-----i~~~~Ptiv~~-~~Gk~i~~~~g~-~~~~l~~~l~~~~  161 (162)
                      .+ .+++                             +     + ..+|+++++ ++|+++.++.|. +++.|++.|++++
T Consensus        88 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~~~~i-~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll  166 (169)
T 2v1m_A           88 KFVTEKYGVQFDMFSKIKVNGSDADDLYKFLKSRQHGTLTNNI-KWNFSKFLVDRQGQPVKRYSPTTAPYDIEGDIMELL  166 (169)
T ss_dssp             HHHHHHHCCCSEEBCCCCCSSTTSCHHHHHHHHHSCCSSSCSC-CSTTCEEEECTTSCEEEEECTTSCGGGGHHHHHHHH
T ss_pred             HHHHHhcCCCCceEEEEeecCccccHHHHHHHhhcCCccCCcc-cccceEEEECCCCCEEEEcCCCCCHHHHHHHHHHHh
Confidence            22 1222                             3     3 345766655 899999999998 8888998888765

>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}

Probab=99.63  E-value=1.6e-15  Score=111.64  Aligned_cols=110  Identities=14%  Similarity=0.075  Sum_probs=86.0

Q ss_pred             ceeeeccccceeEEecCCCeeeeeC---ceEEEEEecCCChhhhhhhHHHHHHHHhcCC--cEEEEEECCC-------cH
Q 031271           51 GFCLIYCINEMVLNINDGGNVVFWV---LKVVIYYTAAWCGPCKFIEPYVKDFAAMYTD--VQFIKIDVDW-------LP  118 (162)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~---k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~--v~f~~vd~d~-------~~  118 (162)
                      ........|++.+.+.+|+.+..++   |+|+|+||++||++|+...|.|.++.++|++  +.++.|++|.       .+
T Consensus        21 ~~~~~~~~p~f~l~~~~G~~~~l~~~~Gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~  100 (190)
T 2vup_A           21 HMSAASSIFDFEVLDADHKPYNLVQHKGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQGFTVLAFPCNQFGGQEPGNE  100 (190)
T ss_dssp             ---CCCSGGGSCCBBTTSSBCCGGGGTTSCEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTCEEEEEECCCSTTCCCSCH
T ss_pred             cCCCCCcccCeEEEcCCCCEEEHHHcCCCEEEEEEecCCCCccHHHHHHHHHHHHHHhcCCeEEEEEEcCccCCCCCCCH
Confidence            3344455788999999999886654   8999999999999999999999999998864  9999998872       11


Q ss_pred             ----HHH-Hh-----------------------------cCCCCCcc------EEEEE-cCCeEEEEEcCC-CHHHHHHH
Q 031271          119 ----EAA-KA-----------------------------FDLIDVLP------TFVLV-KRGKEIDRVVGA-KKDELQMK  156 (162)
Q Consensus       119 ----~l~-~~-----------------------------~~i~~~~P------tiv~~-~~Gk~i~~~~g~-~~~~l~~~  156 (162)
                          +++ ++                             |++ .++|      +++++ ++|+++.++.|. +++.|++.
T Consensus       101 ~~~~~~~~~~~~~~~p~l~~~D~~~~~~~~~~~~l~~~~~~v-~~~P~i~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~  179 (190)
T 2vup_A          101 EEIKEFVCTKFKAEFPIMAKINVNGENAHPLYEYMKKTKPGI-LKTKAIKWNFTSFLIDRDGVPVERFSPGASVKDIEKK  179 (190)
T ss_dssp             HHHHHHHHHHHCCCSCBBCCCBSSSTTBCHHHHHHHHHSCCG-GGCCSCCSTTCEEEECTTSCEEEEECTTCCHHHHHHH
T ss_pred             HHHHHHHHHhcCCCeEEEeecccCcccccHHHHHHHhhcCCc-CCCccccccceEEEECCCCcEEEEECCCCCHHHHHHH
Confidence                222 22                             477 7788      55555 899999999997 89999999


Q ss_pred             HHHHh
Q 031271          157 TEKRR  161 (162)
Q Consensus       157 l~~~~  161 (162)
                      |++++
T Consensus       180 i~~ll  184 (190)
T 2vup_A          180 LIPLL  184 (190)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88765

>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10

Probab=99.63  E-value=1.1e-15  Score=106.86  Aligned_cols=87  Identities=24%  Similarity=0.494  Sum_probs=73.7

Q ss_pred             cccce-eEEecCCCeeeeeC---ceEEEEEecCCChhhhhhhHHHHHHHHhcC---CcEEEEEECCCc------------
Q 031271           57 CINEM-VLNINDGGNVVFWV---LKVVIYYTAAWCGPCKFIEPYVKDFAAMYT---DVQFIKIDVDWL------------  117 (162)
Q Consensus        57 ~~~~~-~~~~~~~~~~~~~~---k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~---~v~f~~vd~d~~------------  117 (162)
                      ..|++ .+.+.+| .+..++   |+++|+||++||++|+.+.|.|.++.++++   ++.++.|++|..            
T Consensus         7 ~~p~~~~l~~~~g-~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~   85 (144)
T 1o73_A            7 YLPGATNLLSKSG-EVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMP   85 (144)
T ss_dssp             TSCTTCCBBCTTS-CBCSGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCS
T ss_pred             hCccceEeecCCC-cCcHHHhCCCEEEEEEECcCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCC
Confidence            35675 8888888 775544   899999999999999999999999999887   488999988863            


Q ss_pred             ------------HHHHHhcCCCCCccEEEEEc--CCeEEEEE
Q 031271          118 ------------PEAAKAFDLIDVLPTFVLVK--RGKEIDRV  145 (162)
Q Consensus       118 ------------~~l~~~~~i~~~~Ptiv~~~--~Gk~i~~~  145 (162)
                                  ..++++|++ ..+|+++++.  +|+++.+.
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~v-~~~Pt~~lid~~~G~i~~~~  126 (144)
T 1o73_A           86 WLALPFDQRSTVSELGKTFGV-ESIPTLITINADTGAIIGTQ  126 (144)
T ss_dssp             SEECCTTCHHHHHHHHHHHTC-CSSSEEEEEETTTCCEEESC
T ss_pred             ceEeeccchhHHHHHHHHcCC-CCCCEEEEEECCCCeEEecc
Confidence                        468899999 9999999886  89988765

>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae}

Probab=99.62  E-value=1.2e-15  Score=110.34  Aligned_cols=103  Identities=19%  Similarity=0.156  Sum_probs=81.8

Q ss_pred             cccceeEEecCCCeeeeeC---ceEEEEEecCCChhhhhhhHHHHHHHHhcCC--cEEEEEECC-----------CcHHH
Q 031271           57 CINEMVLNINDGGNVVFWV---LKVVIYYTAAWCGPCKFIEPYVKDFAAMYTD--VQFIKIDVD-----------WLPEA  120 (162)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~---k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~--v~f~~vd~d-----------~~~~l  120 (162)
                      ..|++.+.+.+|+.+..++   |+|+|+||++||++|+ ..|.|.++.++|++  +.++.|++|           ....+
T Consensus        11 ~~~~f~l~d~~G~~~~l~~~~Gk~vll~F~a~wC~~C~-~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~d~~~~~~~~   89 (171)
T 3cmi_A           11 EFYKLAPVDKKGQPFPFDQLKGKVVLIVNVASKCGFTP-QYKELEALYKRYKDEGFTIIGFPCNQFGHQEPGSDEEIAQF   89 (171)
T ss_dssp             GGGGCCCBBTTSCBCCGGGGTTCEEEEEEEESSSCCHH-HHHHHHHHHHHHGGGTEEEEEEEECSCC-------------
T ss_pred             heeeeEEEcCCCCEecHHHcCCCEEEEEEEecCCCcch-hHHHHHHHHHHhccCCeEEEEEECcccCCCCCCCHHHHHHH
Confidence            4577899999999886654   8999999999999999 99999999998864  888888763           11112


Q ss_pred             H------------------------------HhcCCCCCcc------EEEEE-cCCeEEEEEcCC-CHHHHHHHHHHHh
Q 031271          121 A------------------------------KAFDLIDVLP------TFVLV-KRGKEIDRVVGA-KKDELQMKTEKRR  161 (162)
Q Consensus       121 ~------------------------------~~~~i~~~~P------tiv~~-~~Gk~i~~~~g~-~~~~l~~~l~~~~  161 (162)
                      +                              ..|++ ..+|      +++++ ++|+++.++.|. +++.|++.|++++
T Consensus        90 ~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~v-~~~P~i~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll  167 (171)
T 3cmi_A           90 CQLNYGVTFPIMKKIDVNGGNEDPVYKFLKSQKSGM-LGLRGIKWNFEKFLVDKKGKVYERYSSLTKPSSLSETIEELL  167 (171)
T ss_dssp             -----CCCSCBBCCCBSSSTTBCHHHHHHHHHSCCS-SSCCSCCSTTCEEEECSSSCEEEEECTTSCGGGGHHHHHHHH
T ss_pred             HHhccCCCceEEeeccCCCccchHHHHHHHhccCCc-CCCCcccccceEEEECCCCCEEEEeCCCCCHHHHHHHHHHHH
Confidence            2                              24788 8999      65555 899999999987 8889999888775

>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A

Probab=99.62  E-value=3.1e-15  Score=115.33  Aligned_cols=77  Identities=14%  Similarity=0.220  Sum_probs=68.8

Q ss_pred             EEEEe--cCCChhhhhhhHHHHHHHHhc----CCcEEEEEECCC-----cHHHHHhcCCCC--CccEEEEEcCCeE--EE
Q 031271           79 VIYYT--AAWCGPCKFIEPYVKDFAAMY----TDVQFIKIDVDW-----LPEAAKAFDLID--VLPTFVLVKRGKE--ID  143 (162)
Q Consensus        79 vv~F~--a~wC~~C~~~~~~l~~~~~~~----~~v~f~~vd~d~-----~~~l~~~~~i~~--~~Ptiv~~~~Gk~--i~  143 (162)
                      +|.||  ||||+    +.|.|+++++.+    +++.|++||++.     +++++++|+| .  ++||+++|+ |+.  ..
T Consensus        37 lV~Fy~~ApWCg----l~P~~e~lA~~~~~~~~~v~~akVD~d~~g~~~n~~la~~~~V-~~~~~PTl~~F~-G~~~~~~  110 (248)
T 2c0g_A           37 VVKFDIASPYGE----KHEAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGDRYKV-DDKNFPSIFLFK-GNADEYV  110 (248)
T ss_dssp             EEEEEESSCCSH----HHHHHHHHHHHHHHHCSSEEEEEEEECSSTTCTTHHHHHHTTC-CTTSCCEEEEES-SSSSSEE
T ss_pred             EEEEECCCCCCc----cHHHHHHHHHHHhccCCCeEEEEEECCcccccccHHHHHHhCC-CcCCCCeEEEEe-CCcCcce
Confidence            99999  99999    999999999987    359999999998     8999999999 9  999999999 873  55


Q ss_pred             EE--cCC-CHHHHHHHHHHHh
Q 031271          144 RV--VGA-KKDELQMKTEKRR  161 (162)
Q Consensus       144 ~~--~g~-~~~~l~~~l~~~~  161 (162)
                      ++  .|. +.+.|.+||.++.
T Consensus       111 ~y~~~G~~~~~~L~~fi~~~~  131 (248)
T 2c0g_A          111 QLPSHVDVTLDNLKAFVSANT  131 (248)
T ss_dssp             ECCTTSCCCHHHHHHHHHHHS
T ss_pred             eecccCCCCHHHHHHHHHHhh
Confidence            56  666 8999999999874

>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A

Probab=99.62  E-value=4.5e-15  Score=108.29  Aligned_cols=107  Identities=8%  Similarity=0.054  Sum_probs=83.4

Q ss_pred             eeccccceeEEecCCCeeeeeC---ceEEEEEecCCChhhhhhhHHHHHHHHhcCC--cEEEEEECCC-------c----
Q 031271           54 LIYCINEMVLNINDGGNVVFWV---LKVVIYYTAAWCGPCKFIEPYVKDFAAMYTD--VQFIKIDVDW-------L----  117 (162)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~---k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~--v~f~~vd~d~-------~----  117 (162)
                      .....|+|.+.+.+|+.+..++   |+|+|+||++||++|+...|.|.++.++|++  +.++.|.++.       .    
T Consensus        14 ~~~~~p~f~l~d~~G~~v~l~~~~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~~~vi~is~d~~~~~~~d~~~~~   93 (180)
T 3kij_A           14 KINSFYAFEVKDAKGRTVSLEKYKGKVSLVVNVASDCQLTDRNYLGLKELHKEFGPSHFSVLAFPCNQFGESEPRPSKEV   93 (180)
T ss_dssp             CCCCGGGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHTTTSEEEEEEECCCSTTCCCSCHHHH
T ss_pred             CcCcccceEEecCCCCEecHHHcCCCEEEEEEEecCCCCcHHHHHHHHHHHHHhccCCeEEEEEECCccccCCCCCHHHH
Confidence            4456799999999999987765   8999999999999999999999999999975  8899998653       2    


Q ss_pred             HHHHHh-cCCCC--------------------------CccE-----EEEEcCCeEEEEEcCC-CHHHHHHHHHHHh
Q 031271          118 PEAAKA-FDLID--------------------------VLPT-----FVLVKRGKEIDRVVGA-KKDELQMKTEKRR  161 (162)
Q Consensus       118 ~~l~~~-~~i~~--------------------------~~Pt-----iv~~~~Gk~i~~~~g~-~~~~l~~~l~~~~  161 (162)
                      ..++++ +++ .                          .+|+     +++.++|+++.++.|. +++.+.+.|++++
T Consensus        94 ~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~p~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~lL  169 (180)
T 3kij_A           94 ESFARKNYGV-TFPIFHKIKILGSEGEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEEPIEVIRPDIAALV  169 (180)
T ss_dssp             HHHHHHHHCC-CSCBBCCCCCSSTTCCHHHHHHHHHHTCCCSSTTCEEEECTTSCEEEEECTTCCGGGTHHHHHHHH
T ss_pred             HHHHHHhcCC-CCceeeeeeccCccccHHHHHHHhcCCCCccccceEEEECCCCCEEEEECCCCCHHHHHHHHHHHH
Confidence            235555 554 1                          2564     5555999999999987 7766666665543

>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus}

Probab=99.62  E-value=2.2e-15  Score=108.18  Aligned_cols=103  Identities=21%  Similarity=0.207  Sum_probs=85.1

Q ss_pred             cccceeEEecCCCeeeeeC---ceEEEEEecCCChh-hhhhhHHHHHHHHhcC-----CcEEEEEECCCc----------
Q 031271           57 CINEMVLNINDGGNVVFWV---LKVVIYYTAAWCGP-CKFIEPYVKDFAAMYT-----DVQFIKIDVDWL----------  117 (162)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~---k~vvv~F~a~wC~~-C~~~~~~l~~~~~~~~-----~v~f~~vd~d~~----------  117 (162)
                      ..|++.+.+.+| .+..++   |+++|+||++||++ |+.+.|.|.++.++|+     ++.++.|++|..          
T Consensus        15 ~~p~f~l~~~~g-~~~l~~~~gk~vll~f~~~~C~~~C~~~~~~l~~~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~   93 (172)
T 2k6v_A           15 KPVDFALEGPQG-PVRLSQFQDKVVLLFFGFTRCPDVCPTTLLALKRAYEKLPPKAQERVQVIFVSVDPERDPPEVADRY   93 (172)
T ss_dssp             EECCCEEECSSS-EEEGGGSTTSEEEEEEECTTCSSHHHHHHHHHHHHHTTSCHHHHTTEEEEEEESCTTTCCHHHHHHH
T ss_pred             CCCCeEEEcCCC-CCcHHHhCCCEEEEEEECCCCcchhHHHHHHHHHHHHHhhhhccCCEEEEEEEECCCCCCHHHHHHH
Confidence            468899999999 886654   89999999999997 9999999999999987     699999998742          


Q ss_pred             ------------------HHHHHhcCCC--------------CCccEEEEEcCCeEEEEEcCC---CHHHHHHHHHHH
Q 031271          118 ------------------PEAAKAFDLI--------------DVLPTFVLVKRGKEIDRVVGA---KKDELQMKTEKR  160 (162)
Q Consensus       118 ------------------~~l~~~~~i~--------------~~~Ptiv~~~~Gk~i~~~~g~---~~~~l~~~l~~~  160 (162)
                                        ..+++.|++.              ..+|+++++.+|+++.++.|.   +.++|++.|+++
T Consensus        94 ~~~~~~~~~~l~d~~~~~~~~~~~~gv~~~~~~~~~~~~~~i~~~P~~~lid~G~i~~~~~g~~~~~~~~l~~~l~~l  171 (172)
T 2k6v_A           94 AKAFHPSFLGLSGSPEAVREAAQTFGVFYQKSQYRGPGEYLVDHTATTFVVKEGRLVLLYSPDKAEATDRVVADLQAL  171 (172)
T ss_dssp             HHHHCTTEEEECCCHHHHHHHHHHHTCCEEEEEEEETTEEEEEECCCEEEEETTEEEEEECHHHHTCHHHHHHHHHHC
T ss_pred             HHHhCCCcEEEeCCHHHHHHHHHhcCeEEEeccCCCCCCceEecCCEEEEEECCEEEEEECCCCCCCHHHHHHHHHHh
Confidence                              2456666530              578987777799999998876   788999998875

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A

Probab=99.61  E-value=1.2e-15  Score=127.46  Aligned_cols=85  Identities=28%  Similarity=0.402  Sum_probs=74.6

Q ss_pred             eCceEEEEEecCCChhhhhhhHHHHHHHHhcC----CcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeE--EEEEcC
Q 031271           74 WVLKVVIYYTAAWCGPCKFIEPYVKDFAAMYT----DVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKE--IDRVVG  147 (162)
Q Consensus        74 ~~k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~----~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~--i~~~~g  147 (162)
                      .+++|+|+||++||++|+.+.|.|+++++.++    ++.++.+|++.+... + |+| .++||+++|++|+.  ..++.|
T Consensus       375 ~~k~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~~~~~-~-~~v-~~~Pt~~~~~~G~~~~~~~~~G  451 (504)
T 2b5e_A          375 PKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTENDVR-G-VVI-EGYPTIVLYPGGKKSESVVYQG  451 (504)
T ss_dssp             TTCCEEEEEECTTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEGGGCCCS-S-CCC-SSSSEEEEECCTTSCCCCBCCS
T ss_pred             CCCCEEEEEECCCChhHHHHhHHHHHHHHHhhccCCcEEEEEecCCccccc-c-CCc-eecCeEEEEeCCceecceEecC
Confidence            45778999999999999999999999999886    599999999887543 4 999 99999999999976  667778


Q ss_pred             C-CHHHHHHHHHHHh
Q 031271          148 A-KKDELQMKTEKRR  161 (162)
Q Consensus       148 ~-~~~~l~~~l~~~~  161 (162)
                      . +.+.|.++|+++.
T Consensus       452 ~~~~~~l~~~i~~~~  466 (504)
T 2b5e_A          452 SRSLDSLFDFIKENG  466 (504)
T ss_dssp             CCCHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHhcC
Confidence            7 8999999999874

>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A

Probab=99.61  E-value=2.8e-15  Score=110.18  Aligned_cols=105  Identities=14%  Similarity=0.114  Sum_probs=84.4

Q ss_pred             ccccceeEEecCCCeeeeeC---ceEEEEEecCCChhhhhhhHHHHHHHHhcCC--cEEEEEECCC--------cHHHH-
Q 031271           56 YCINEMVLNINDGGNVVFWV---LKVVIYYTAAWCGPCKFIEPYVKDFAAMYTD--VQFIKIDVDW--------LPEAA-  121 (162)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~---k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~--v~f~~vd~d~--------~~~l~-  121 (162)
                      ...|+|.+.+.+|+.+..++   |+|||+||++||++|+...|.|.++.++|++  +.++.|++|.        ..++. 
T Consensus        24 ~~~p~f~l~d~~G~~~~l~~~~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~~~vi~is~d~~~~~e~~~~~~~~~  103 (187)
T 3dwv_A           24 SSIFDFEVLDADHKPYNLVQHKGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQGFTVLAFPSNQFGGQEPGNEEEIKE  103 (187)
T ss_dssp             CSGGGSCCBBTTSCBCCGGGGTTSCEEEEEECCBCSCCTTHHHHHHHHHHHHGGGTCEEEEEEBCCCSSCSSSBTTHHHH
T ss_pred             CccCCeEEEcCCCCEeeHHHhCCCEEEEEEecCCCCCcHHHHHHHHHHHHHhhhCCeEEEEEECcccCCCCCCCHHHHHH
Confidence            45788999999999886655   9999999999999999999999999999864  8999988752        11221 


Q ss_pred             -----------------------------------HhcCCCCCcc---EEEEE-cCCeEEEEEcCC-CHHHHHHHHHHHh
Q 031271          122 -----------------------------------KAFDLIDVLP---TFVLV-KRGKEIDRVVGA-KKDELQMKTEKRR  161 (162)
Q Consensus       122 -----------------------------------~~~~i~~~~P---tiv~~-~~Gk~i~~~~g~-~~~~l~~~l~~~~  161 (162)
                                                         ..+++ ..+|   +++++ ++|+++.++.|. +++.|.+.|++++
T Consensus       104 ~~~~~~~~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~~~~-~~iP~~~~~~liD~~G~i~~~~~g~~~~~~l~~~i~~lL  182 (187)
T 3dwv_A          104 FVCTKFKAEFPIMAKINVNGENAHPLYEYMKKTKPGILAT-KAIKWNFTSFLIDRDGVPVERFSPGASVKDIEEKLIPLL  182 (187)
T ss_dssp             SCCBCCCCSSCBBCCBCCSCC-CCHHHHHHHHHSCCSBSS-SSCCSTTCEEEECTTSCEEEEECTTCCHHHHHHHHHHHC
T ss_pred             HHHhccCCCCceeeccccCCcchhHHHHHHHhhcCCccCC-CccccceeEEEECCCCCEEEEECCCCCHHHHHHHHHHHH
Confidence                                               12244 4677   76666 899999999998 8999999998875

>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda}

Probab=99.40  E-value=4.9e-17  Score=113.44  Aligned_cols=90  Identities=21%  Similarity=0.381  Sum_probs=74.3

Q ss_pred             ccceeEEecCCCeeeee----Cc-eEEEEEecCCChhhhhhhHHHHHHHHhc----CCcEEEEEECCCc-----------
Q 031271           58 INEMVLNINDGGNVVFW----VL-KVVIYYTAAWCGPCKFIEPYVKDFAAMY----TDVQFIKIDVDWL-----------  117 (162)
Q Consensus        58 ~~~~~~~~~~~~~~~~~----~k-~vvv~F~a~wC~~C~~~~~~l~~~~~~~----~~v~f~~vd~d~~-----------  117 (162)
                      .|++.+.+.+|+.+..+    +| +++|+||++||++|+.+.|.|+++.+++    +++.++.|++|..           
T Consensus         4 ~p~~~l~~~~g~~~~l~~~~~gk~~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~v~~v~~d~~~~~~~~~~~~~   83 (143)
T 2lus_A            4 IQGIKLVKKNRCEVNANEALKDKDIIGFYFSAHWCPPCRGFTPILADMYSELVDDSAPFEIIFVSSDRSEDDMFQYMMES   83 (143)
Confidence            57788888888876543    36 9999999999999999999999999888    4688888887754           


Q ss_pred             --------------HHHHHhcCCCCCccEEEEE-cCCeEEEEEcCC
Q 031271          118 --------------PEAAKAFDLIDVLPTFVLV-KRGKEIDRVVGA  148 (162)
Q Consensus       118 --------------~~l~~~~~i~~~~Ptiv~~-~~Gk~i~~~~g~  148 (162)
                                    ..+++.|++ .++|+++++ ++|+++.+..+.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~v-~~~P~~~lid~~G~i~~~~~~~  128 (143)
T 2lus_A           84 HGDWLAIPYRSGPASNVTAKYGI-TGIPALVIVKKDGTLISMNGRG  128 (143)
Confidence                          368899999 999999988 599998875433

>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens}

Probab=99.60  E-value=3.8e-15  Score=108.85  Aligned_cols=107  Identities=8%  Similarity=0.008  Sum_probs=84.9

Q ss_pred             eccccceeEEecCCCeeeeeC---ceEEEEEecCCChhhhhhhHHHHHHHHhcCC--cEEEEEECCC-------cH----
Q 031271           55 IYCINEMVLNINDGGNVVFWV---LKVVIYYTAAWCGPCKFIEPYVKDFAAMYTD--VQFIKIDVDW-------LP----  118 (162)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~---k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~--v~f~~vd~d~-------~~----  118 (162)
                      ....|++.+.+.+|+.+..++   |+|||+||++||++|+...|.|+++.++|++  +.++.|++|.       .+    
T Consensus        26 g~~~p~f~l~~~~G~~~~l~~~~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~v~vv~vs~d~~~~~e~~~~~~~~  105 (181)
T 2p31_A           26 EQDFYDFKAVNIRGKLVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDSNKEIE  105 (181)
T ss_dssp             -CCGGGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHH
T ss_pred             CCccCceEeecCCCCEecHHHcCCCEEEEEEeccCCCCcHHHHHHHHHHHHHhhcCCEEEEEEECcCCCCCCCCCHHHHH
Confidence            345688999999999887655   8999999999999999999999999999864  8999998763       22    


Q ss_pred             HHHHh-cC-----------------------CCCCcc-------E-EEEEcCCeEEEEEcCC-CHHHHHHHHHHHhC
Q 031271          119 EAAKA-FD-----------------------LIDVLP-------T-FVLVKRGKEIDRVVGA-KKDELQMKTEKRRN  162 (162)
Q Consensus       119 ~l~~~-~~-----------------------i~~~~P-------t-iv~~~~Gk~i~~~~g~-~~~~l~~~l~~~~~  162 (162)
                      +++++ ++                       + ..+|       + +++.++|+++.++.|. ++++|++.|+++++
T Consensus       106 ~~~~~~~~~~~p~~~~~d~~g~~~~~~~~~~~-~~~P~~~~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~  181 (181)
T 2p31_A          106 SFARRTYSVSFPMFSKIAVTGTGAHPAFKYLA-QTSGKEPTWNFWKYLVAPDGKVVGAWDPTVSVEEVRPQITALVR  181 (181)
T ss_dssp             HHHHHHHCCCSCBBCCCCCSSTTSCHHHHHHH-HHHSCCCCSTTCEEEECTTSCEEEEECTTSCHHHHHHHHHTTCC
T ss_pred             HHHHhhcCCCceeEeecccCCccchhhhhhhh-hcCCCccccceeEEEEcCCCCEEEEeCCCCCHHHHHHHHHHHhC
Confidence            23333 22                       3 4578       4 4555899999999998 89999999988753

>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24

Probab=99.60  E-value=7.6e-15  Score=105.46  Aligned_cols=100  Identities=11%  Similarity=0.137  Sum_probs=83.0

Q ss_pred             hhhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhhhhhhHHH---HHHHHhc
Q 031271           28 KHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYV---KDFAAMY  104 (162)
Q Consensus        28 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~~~l---~~~~~~~  104 (162)
                      ..+|++.++.|++.+|++                                 +|+||++||.+|+.|....   .++++.+
T Consensus        28 ~~~~~~Al~~Ak~~~K~v---------------------------------lvd~~a~wC~~C~~me~~vf~d~~V~~~l   74 (153)
T 2dlx_A           28 KGSFETAKECGQMQNKWL---------------------------------MINIQNVQDFACQCLNRDVWSNEAVKNII   74 (153)
T ss_dssp             CSCHHHHHHHHHHHTCEE---------------------------------EEEEECSCTTTHHHHHHHTTTCHHHHHHH
T ss_pred             ccCHHHHHHHHHHcCCeE---------------------------------EEEEECCCCHhHHHHHHHhcCCHHHHHHH
Confidence            468999999999899999                                 9999999999999997655   5555544


Q ss_pred             -CCcEEEEEECCC--cHHHHHhcCCCCCccEEEEE-cC-CeEEEEEcCCCHHHHHHHHHHHh
Q 031271          105 -TDVQFIKIDVDW--LPEAAKAFDLIDVLPTFVLV-KR-GKEIDRVVGAKKDELQMKTEKRR  161 (162)
Q Consensus       105 -~~v~f~~vd~d~--~~~l~~~~~i~~~~Ptiv~~-~~-Gk~i~~~~g~~~~~l~~~l~~~~  161 (162)
                       .++.++.+|++.  ...+.++|++ .++|+++|+ .+ |+.+.++.|.+++++.+.|++.+
T Consensus        75 ~~~fv~v~~d~~~~~~~~l~~~y~v-~~~P~~~fld~~~G~~l~~~~g~~~~~fl~~L~~~l  135 (153)
T 2dlx_A           75 REHFIFWQVYHDSEEGQRYIQFYKL-GDFPYVSILDPRTGQKLVEWHQLDVSSFLDQVTGFL  135 (153)
T ss_dssp             HHTEEEEEEESSSHHHHHHHHHHTC-CSSSEEEEECTTTCCCCEEESSCCHHHHHHHHHHHH
T ss_pred             HcCeEEEEEecCCHhHHHHHHHcCC-CCCCEEEEEeCCCCcEeeecCCCCHHHHHHHHHHHH
Confidence             368999999975  3468899999 999999999 55 88888887779999998887754

>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A

Probab=99.60  E-value=6.7e-15  Score=112.96  Aligned_cols=77  Identities=18%  Similarity=0.266  Sum_probs=69.1

Q ss_pred             EEEEec--CCChhhhhhhHHHHHHHHhcC---CcEEEEEECCC-----cHHHHHhcCCCC--CccEEEEEcCCe--EEEE
Q 031271           79 VIYYTA--AWCGPCKFIEPYVKDFAAMYT---DVQFIKIDVDW-----LPEAAKAFDLID--VLPTFVLVKRGK--EIDR  144 (162)
Q Consensus        79 vv~F~a--~wC~~C~~~~~~l~~~~~~~~---~v~f~~vd~d~-----~~~l~~~~~i~~--~~Ptiv~~~~Gk--~i~~  144 (162)
                      +|.||+  |||+    +.|.|+++++.+.   ++.|+.||++.     +++++++|+| .  ++||+++|++|+  ...+
T Consensus        26 lV~FyA~~pWCg----l~P~~e~lA~~~~~~~~v~~akVDvd~~g~~~~~~l~~~~~V-~~~~~PTl~~f~~G~~~~~~~  100 (240)
T 2qc7_A           26 LVKFDTQYPYGE----KQDEFKRLAENSASSDDLLVAEVGISDYGDKLNMELSEKYKL-DKESYPVFYLFRDGDFENPVP  100 (240)
T ss_dssp             EEEECCSSCCSH----HHHHHHHHHHHHTTCTTEEEEEECCCCSSSCCSHHHHHHTTC-CGGGCSEEEEEETTCSSCCEE
T ss_pred             EEEEeCCCCCCc----chHHHHHHHHHhcCCCCeEEEEEeCCcccchhhHHHHHHcCC-CCCCCCEEEEEeCCCcCccee
Confidence            999999  9999    9999999999884   59999999654     8999999999 9  999999999998  4567


Q ss_pred             EcCC-CHHHHHHHHHHH
Q 031271          145 VVGA-KKDELQMKTEKR  160 (162)
Q Consensus       145 ~~g~-~~~~l~~~l~~~  160 (162)
                      +.|. +.+.|.+||.++
T Consensus       101 y~G~~~~~~L~~fi~~~  117 (240)
T 2qc7_A          101 YTGAVKVGAIQRWLKGQ  117 (240)
T ss_dssp             CCSCSCHHHHHHHHHHT
T ss_pred             ecCCCCHHHHHHHHHHh
Confidence            7787 899999999876

>2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A

Probab=99.60  E-value=5.6e-15  Score=110.83  Aligned_cols=110  Identities=13%  Similarity=0.041  Sum_probs=84.1

Q ss_pred             eeeeccccceeEEecC-CCeeeeeC---ceEEEEEecCCChhhhhhhHHHHHHHHhcCC--cEEEEEECCC--------c
Q 031271           52 FCLIYCINEMVLNIND-GGNVVFWV---LKVVIYYTAAWCGPCKFIEPYVKDFAAMYTD--VQFIKIDVDW--------L  117 (162)
Q Consensus        52 ~~~~~~~~~~~~~~~~-~~~~~~~~---k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~--v~f~~vd~d~--------~  117 (162)
                      +......|+|.+.+.+ |+.+..++   |+|||+||++||++|+...|.|+++.++|++  +.++.|++++        .
T Consensus        20 ~~~~~~~p~f~l~~~~~G~~v~l~~~~Gk~vlv~FwatwC~~C~~e~p~l~~l~~~~~~~g~~vv~v~~d~~~~~e~d~~   99 (208)
T 2f8a_A           20 FQSMQSVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLGGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQENAKN   99 (208)
T ss_dssp             --CCCCGGGCEECBTTCSSCEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTTTCSCH
T ss_pred             hhhcCccCceEeeeCCCCCCccHHHcCCCEEEEEEECCCCccHHHHHHHHHHHHHHccCCCeEEEEEECCcccccCCCCH
Confidence            3344567889999999 99887655   8999999999999999999999999998864  8999998761        1


Q ss_pred             HH---HHH------hcCCC----------------------------------------------------CCccEEEEE
Q 031271          118 PE---AAK------AFDLI----------------------------------------------------DVLPTFVLV  136 (162)
Q Consensus       118 ~~---l~~------~~~i~----------------------------------------------------~~~Ptiv~~  136 (162)
                      .+   +++      +|++.                                                    ...|+.+++
T Consensus       100 ~~i~~f~~~~~~~~~~~~~fp~l~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~tflI  179 (208)
T 2f8a_A          100 EEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLV  179 (208)
T ss_dssp             HHHHHHHHHTSSCTTCCCSSEEBCCCCCSSTTCCHHHHHHHHHSCSCTTCSSCCCSSGGGCCSSSCCTTCCCSTTCEEEE
T ss_pred             HHHHHHHHhcccccccccceEEEEEeecCCCCccHHHHHHHhcCCCccccchhhccccccccccccccCccccCceEEEE
Confidence            22   222      34320                                                    234765555


Q ss_pred             -cCCeEEEEEcCC-CHHHHHHHHHHHh
Q 031271          137 -KRGKEIDRVVGA-KKDELQMKTEKRR  161 (162)
Q Consensus       137 -~~Gk~i~~~~g~-~~~~l~~~l~~~~  161 (162)
                       ++|+++.++.|. ++++|++.|++++
T Consensus       180 D~~G~i~~~~~g~~~~~~l~~~I~~ll  206 (208)
T 2f8a_A          180 GPDGVPLRRYSRRFQTIDIEPDIEALL  206 (208)
T ss_dssp             CTTSCEEEEECTTSCGGGGHHHHHHHH
T ss_pred             cCCCcEEEEeCCCCCHHHHHHHHHHHh
Confidence             899999999988 8889999998875

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=99.60  E-value=2e-15  Score=132.09  Aligned_cols=87  Identities=16%  Similarity=0.252  Sum_probs=78.6

Q ss_pred             eCceEEEEEecCCChhhhhhhHHHHHHHHhcC-CcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcC----C
Q 031271           74 WVLKVVIYYTAAWCGPCKFIEPYVKDFAAMYT-DVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVG----A  148 (162)
Q Consensus        74 ~~k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~-~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g----~  148 (162)
                      .+++++|+||++||++|+.+.|.++++++++. ++.|+.||+++++.++++|+| .++||+++|++|+.+.++.|    .
T Consensus       674 ~~~~v~v~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~~vd~~~~~~~~~~~~v-~~~Pt~~~~~~g~~~~~~~G~~~g~  752 (780)
T 3apo_A          674 GKTHWVVDFYAPWSGPSQNFAPEFELLARMIKGKVRAGKVDCQAYPQTCQKAGI-KAYPSVKLYQYERAKKSIWEEQINS  752 (780)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTCHHHHHHTTC-CSSSEEEEEEEETTTTEEEEEEECC
T ss_pred             CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCceEEEEECCCCHHHHHhcCC-CcCCEEEEEcCCCccccccCcccCC
Confidence            45677999999999999999999999999996 499999999999999999999 99999999999987766666    3


Q ss_pred             -CHHHHHHHHHHHh
Q 031271          149 -KKDELQMKTEKRR  161 (162)
Q Consensus       149 -~~~~l~~~l~~~~  161 (162)
                       +.+.|.++|++++
T Consensus       753 ~~~~~l~~~l~~~l  766 (780)
T 3apo_A          753 RDAKTIAALIYGKL  766 (780)
T ss_dssp             CCHHHHHHHHHHHT
T ss_pred             cCHHHHHHHHHHHH
Confidence             8999999999875

>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10

Probab=99.59  E-value=6.2e-15  Score=108.07  Aligned_cols=104  Identities=13%  Similarity=0.069  Sum_probs=88.0

Q ss_pred             cccceeEEecCCC----eeeeeC---ceEEEEEe-cCCChhhhhhhHHHHHHHHhcC--CcEEEEEECCC----------
Q 031271           57 CINEMVLNINDGG----NVVFWV---LKVVIYYT-AAWCGPCKFIEPYVKDFAAMYT--DVQFIKIDVDW----------  116 (162)
Q Consensus        57 ~~~~~~~~~~~~~----~~~~~~---k~vvv~F~-a~wC~~C~~~~~~l~~~~~~~~--~v~f~~vd~d~----------  116 (162)
                      ..|++.+.+.+|+    .+..++   |+++|+|| ++||++|....|.|.++.++|+  ++.++.|++|.          
T Consensus         6 ~~P~f~l~~~~g~~~~~~~~l~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~vs~d~~~~~~~~~~~   85 (187)
T 1we0_A            6 EVQPFRAQAFQSGKDFFEVTEADLKGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKLGVEVYSVSTDTHFVHKAWHEN   85 (187)
T ss_dssp             BCCCCEEEEECSSSCCEEEETTTTSSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHHS
T ss_pred             cCCCeEEeccCCCccceEecHHHHCCCCEEEEEECCCCCcchHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHH
Confidence            4678999999888    776654   89999999 9999999999999999998886  59999998874          


Q ss_pred             ---------------cHHHHHhcCCCC------CccEEEEE-cCCeEEEEEcCC-----CHHHHHHHHHHHh
Q 031271          117 ---------------LPEAAKAFDLID------VLPTFVLV-KRGKEIDRVVGA-----KKDELQMKTEKRR  161 (162)
Q Consensus       117 ---------------~~~l~~~~~i~~------~~Ptiv~~-~~Gk~i~~~~g~-----~~~~l~~~l~~~~  161 (162)
                                     ...+++.|++ .      .+|+++++ ++|+++.++.|.     +.++|.+.|+++.
T Consensus        86 ~~~~~~~~~~~~~d~~~~~~~~~~v-~~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l~  156 (187)
T 1we0_A           86 SPAVGSIEYIMIGDPSQTISRQFDV-LNEETGLADRGTFIIDPDGVIQAIEINADGIGRDASTLINKVKAAQ  156 (187)
T ss_dssp             CHHHHTCCSEEEECTTCHHHHHTTC-EETTTTEECEEEEEECTTSBEEEEEEECTTSCCCTTHHHHHHHHHH
T ss_pred             hccccCCCceEEECCchHHHHHhCC-CcCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHh
Confidence                           3468889999 8      89998888 899999988775     5788888887653

>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A

Probab=99.59  E-value=1.6e-14  Score=102.83  Aligned_cols=106  Identities=12%  Similarity=0.071  Sum_probs=86.6

Q ss_pred             eeccccceeEEecCCCeeeeeC---c-eEEEEEe-cCCChhhhhhhHHHHHHHHhcC--CcEEEEEECCC----------
Q 031271           54 LIYCINEMVLNINDGGNVVFWV---L-KVVIYYT-AAWCGPCKFIEPYVKDFAAMYT--DVQFIKIDVDW----------  116 (162)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~---k-~vvv~F~-a~wC~~C~~~~~~l~~~~~~~~--~v~f~~vd~d~----------  116 (162)
                      .....|++.+.+.+|+.+..++   + +++|+|| ++||++|+...|.|.++.++|.  ++.++.|+.|.          
T Consensus        11 ~G~~~p~f~l~~~~G~~~~l~~~~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~   90 (160)
T 1xvw_A           11 VGATAPDFTLRDQNQQLVTLRGYRGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFENDDSAALAISVGPPPTHKIWATQ   90 (160)
T ss_dssp             TTSBCCCCEEECTTSCEEEGGGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSSSEEEEEEESCCHHHHHHHHHH
T ss_pred             CCCCCCCeEeEcCCCCEEeHHHhcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCcEEEEEeCCCHHHHHHHHHh
Confidence            3345688999999999887665   5 8999998 9999999999999999999985  49999998863          


Q ss_pred             -------------cHHHHHhcCCCC----Ccc--EEEEE-cCCeEEEEEcCC-C----HHHHHHHHHHH
Q 031271          117 -------------LPEAAKAFDLID----VLP--TFVLV-KRGKEIDRVVGA-K----KDELQMKTEKR  160 (162)
Q Consensus       117 -------------~~~l~~~~~i~~----~~P--tiv~~-~~Gk~i~~~~g~-~----~~~l~~~l~~~  160 (162)
                                   ...+++.|++ .    ++|  +++++ ++|+++.++.|. +    .+++.+.|+++
T Consensus        91 ~~~~~~~~~d~~~~~~~~~~~~v-~~~~~~~p~~~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l  158 (160)
T 1xvw_A           91 SGFTFPLLSDFWPHGAVSQAYGV-FNEQAGIANRGTFVVDRSGIIRFAEMKQPGEVRDQRLWTDALAAL  158 (160)
T ss_dssp             HTCCSCEEECTTTTTHHHHHTTC-EETTTTEECSEEEEECTTSBEEEEEECCTTCCCCHHHHHHHHHHT
T ss_pred             cCCCceEEecCCcChHHHHHcCC-ccccCCCeeeeEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence                         5678999999 8    999  55555 899999998886 2    46666666654

>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A

Probab=99.59  E-value=1.4e-14  Score=103.72  Aligned_cols=107  Identities=15%  Similarity=0.195  Sum_probs=84.5

Q ss_pred             eccccceeEEecCCCeeeeeC---ceEEEEEecCCChhhhhhhHHHHHHHHhcCC--cEEEEEECCC-------c----H
Q 031271           55 IYCINEMVLNINDGGNVVFWV---LKVVIYYTAAWCGPCKFIEPYVKDFAAMYTD--VQFIKIDVDW-------L----P  118 (162)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~---k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~--v~f~~vd~d~-------~----~  118 (162)
                      ....|++.+.+.+|+.+..++   |+|+|+||++||++|+...|.|.++.++|++  +.++.|++|.       .    .
T Consensus         9 g~~~p~f~l~~~~g~~~~l~~~~gk~vll~f~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~   88 (170)
T 2p5q_A            9 PESVHDFTVKDAKENDVDLSIFKGKVLLIVNVASKCGMTNSNYAEMNQLYEKYKDQGLEILAFPCNQFGEEEPGTNDQIT   88 (170)
T ss_dssp             -CCGGGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCTTTTCCCSCHHHHH
T ss_pred             CccccceEEEcCCCCEecHHHhCCCEEEEEEEeccCCccHHHHHHHHHHHHHhccCCEEEEEEECCCCCCCCCCCHHHHH
Confidence            345688999999999887654   9999999999999999999999999998864  9999998862       1    2


Q ss_pred             HHHH-hcCC----C--------------------------CCcc---EEEEE-cCCeEEEEEcCC-CHHHHHHHHHHHh
Q 031271          119 EAAK-AFDL----I--------------------------DVLP---TFVLV-KRGKEIDRVVGA-KKDELQMKTEKRR  161 (162)
Q Consensus       119 ~l~~-~~~i----~--------------------------~~~P---tiv~~-~~Gk~i~~~~g~-~~~~l~~~l~~~~  161 (162)
                      ++++ +|++    .                          ..+|   +++++ ++|+++.++.|. +++.|++.|++++
T Consensus        89 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll  167 (170)
T 2p5q_A           89 DFVCTRFKSEFPIFDKIDVNGENASPLYRFLKLGKWGIFGDDIQWNFAKFLVNKDGQVVDRYYPTTSPLSLERDIKQLL  167 (170)
T ss_dssp             HHHHHHTCCCSCBBCCCBSSSTTBCHHHHHHHTHHHHTTCSCCCSTTCEEEECTTSCEEEEECTTSCGGGGHHHHHHHT
T ss_pred             HHHHHhcCCCceeEeeeccCCCchHHHHHHHHhcCCCccCCcccccccEEEECCCCCEEEeeCCCCCHHHHHHHHHHHh
Confidence            2333 4332    0                          2468   65555 899999999998 8889999998875

>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens}

Probab=99.57  E-value=1.3e-14  Score=105.95  Aligned_cols=106  Identities=17%  Similarity=0.173  Sum_probs=82.8

Q ss_pred             eccccceeEEecCCCeeeeeC---ceEEEEEecCCChhhhhhhHHHHHHHHhcCC--cEEEEEECCC-------cH----
Q 031271           55 IYCINEMVLNINDGGNVVFWV---LKVVIYYTAAWCGPCKFIEPYVKDFAAMYTD--VQFIKIDVDW-------LP----  118 (162)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~---k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~--v~f~~vd~d~-------~~----  118 (162)
                      ....|++.+.+.+|+.+..++   |+|||+||++||++|+...|.|.++.++|++  +.++.|++|.       .+    
T Consensus        24 g~~~p~f~l~~~~G~~~~l~~~~gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~e~~~~~~~~  103 (183)
T 2obi_A           24 ARSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQCGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIK  103 (183)
T ss_dssp             CCSGGGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHH
T ss_pred             cCcccceEEEcCCCCEeeHHHcCCCEEEEEEeCCCCCCcHHHHHHHHHHHHHHhcCCeEEEEEECCCCCCCCCCCHHHHH
Confidence            345788999999999887655   8999999999999999999999999998864  8999998752       11    


Q ss_pred             HHHHhc-------------------------------CC----CCCccEEEEE-cCCeEEEEEcCC-CHHHHHHHHHHH
Q 031271          119 EAAKAF-------------------------------DL----IDVLPTFVLV-KRGKEIDRVVGA-KKDELQMKTEKR  160 (162)
Q Consensus       119 ~l~~~~-------------------------------~i----~~~~Ptiv~~-~~Gk~i~~~~g~-~~~~l~~~l~~~  160 (162)
                      ++++++                               ++    ...+|+++++ ++|+++.++.|. ++++|++.|+++
T Consensus       104 ~~~~~~~~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~l  182 (183)
T 2obi_A          104 EFAAGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDLPHY  182 (183)
T ss_dssp             HHHHTTTCCSEEBCCCCCSSTTSCHHHHHHHTSTTTCCSSSSSCCSTTCEEEECTTSCEEEEECTTSCTHHHHTTSGGG
T ss_pred             HHHHHcCCCceEEeeeccCCcchhHHHHHhhccCCCCCcccccccccceEEEECCCCCEEEEeCCCCCHHHHHHHHHHh
Confidence            112222                               32    0335886666 899999999998 888898888765

>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=99.57  E-value=1.5e-14  Score=106.89  Aligned_cols=105  Identities=11%  Similarity=0.012  Sum_probs=86.8

Q ss_pred             ccccceeEEecC-------------C--CeeeeeC---ceEEEEEe-cCCChhhhhhhHHHHHHHHhcC--CcEEEEEEC
Q 031271           56 YCINEMVLNIND-------------G--GNVVFWV---LKVVIYYT-AAWCGPCKFIEPYVKDFAAMYT--DVQFIKIDV  114 (162)
Q Consensus        56 ~~~~~~~~~~~~-------------~--~~~~~~~---k~vvv~F~-a~wC~~C~~~~~~l~~~~~~~~--~v~f~~vd~  114 (162)
                      ...|++.+.+.+             |  +.+..++   |+++|+|| ++||++|+...|.|.++.++|+  ++.++.|++
T Consensus         8 ~~~P~f~l~~~~~~~~~~~~~~~~~G~~~~v~l~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Vs~   87 (195)
T 2bmx_A            8 DQFPAYQLTALIGGDLSKVDAKQPGDYFTTITSDEHPGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRDAQILGVSI   87 (195)
T ss_dssp             CBCCCCEEEEECSSCGGGSCCSSGGGGEEEEETTSSTTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTTTEEEEEEES
T ss_pred             CcCCCcCcccccccccccccccccCCCccEeeHHHhCCCcEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHCCCEEEEEEC
Confidence            346778888877             5  5665544   89999999 9999999999999999999886  599999988


Q ss_pred             CC-------------------------cHHHHHhcCCCC-----CccEEEEE-cCCeEEEEEcCC-----CHHHHHHHHH
Q 031271          115 DW-------------------------LPEAAKAFDLID-----VLPTFVLV-KRGKEIDRVVGA-----KKDELQMKTE  158 (162)
Q Consensus       115 d~-------------------------~~~l~~~~~i~~-----~~Ptiv~~-~~Gk~i~~~~g~-----~~~~l~~~l~  158 (162)
                      |.                         ...+++.|++ .     .+|+++++ ++|+++.++.|.     +.++|++.|+
T Consensus        88 d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v-~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~  166 (195)
T 2bmx_A           88 DSEFAHFQWRAQHNDLKTLPFPMLSDIKRELSQAAGV-LNADGVADRVTFIVDPNNEIQFVSATAGSVGRNVDEVLRVLD  166 (195)
T ss_dssp             SCHHHHHHHHHHCTTGGGCCSCEEECTTSHHHHHHTC-BCTTSSBCEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHhccccCCceeEEeCCchHHHHHhCC-cccCCCccceEEEEcCCCeEEEEEecCCCCCCCHHHHHHHHH
Confidence            74                         3467889999 8     99998888 799999988765     5788988888


Q ss_pred             HHh
Q 031271          159 KRR  161 (162)
Q Consensus       159 ~~~  161 (162)
                      ++.
T Consensus       167 ~l~  169 (195)
T 2bmx_A          167 ALQ  169 (195)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            764

>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A

Probab=99.56  E-value=4.4e-14  Score=101.41  Aligned_cols=108  Identities=13%  Similarity=0.061  Sum_probs=88.7

Q ss_pred             eeccccceeEEecCCCeeeeeC---ceEEEEEecCC-ChhhhhhhHHHHHHHHhcCCcEEEEEECCC-------------
Q 031271           54 LIYCINEMVLNINDGGNVVFWV---LKVVIYYTAAW-CGPCKFIEPYVKDFAAMYTDVQFIKIDVDW-------------  116 (162)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~---k~vvv~F~a~w-C~~C~~~~~~l~~~~~~~~~v~f~~vd~d~-------------  116 (162)
                      .....|++.+.+.+|+.+..++   |+++|+||++| |++|+...|.|.++.++|+++.++.|+.|.             
T Consensus        20 ~G~~~p~f~l~~~~G~~~~l~~~~gk~~vl~F~~~~~C~~C~~~~~~l~~l~~~~~~~~vv~is~d~~~~~~~~~~~~~~   99 (167)
T 2jsy_A           20 VGDQAPDFTVLTNSLEEKSLADMKGKVTIISVIPSIDTGVCDAQTRRFNEEAAKLGDVNVYTISADLPFAQARWCGANGI   99 (167)
T ss_dssp             TTSCCCCCEEEBTTCCEEEHHHHTTSCEEEEECSCSTTSHHHHTHHHHHHHHHHHSSCEEEEEECSSGGGTSCCGGGSSC
T ss_pred             CCCcCCceEEECCCCCEeeHHHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHHHHhcCC
Confidence            3445788999999999887654   89999999999 999999999999999988779999998863             


Q ss_pred             ----------cHHHHHhcCCCCC------ccEEEEE-cCCeEEEEEcCC------CHHHHHHHHHHHhC
Q 031271          117 ----------LPEAAKAFDLIDV------LPTFVLV-KRGKEIDRVVGA------KKDELQMKTEKRRN  162 (162)
Q Consensus       117 ----------~~~l~~~~~i~~~------~Ptiv~~-~~Gk~i~~~~g~------~~~~l~~~l~~~~~  162 (162)
                                ..++++.|++ ..      .|+++++ ++|+++.++.|.      +.+++.+.|+++++
T Consensus       100 ~~~~~~~d~~~~~~~~~~~v-~~~~~g~~~p~~~lid~~G~i~~~~~g~~~~~~~~~~~l~~~l~~llk  167 (167)
T 2jsy_A          100 DKVETLSDHRDMSFGEAFGV-YIKELRLLARSVFVLDENGKVVYAEYVSEATNHPNYEKPIEAAKALVK  167 (167)
T ss_dssp             TTEEEEEGGGTCHHHHHTTC-BBTTTCSBCCEEEEECTTSCEEEEEECSBTTSCCCSHHHHHHHHHHHC
T ss_pred             CCceEeeCCchhHHHHHhCC-ccccCCceeeEEEEEcCCCcEEEEEecCCcCCCCCHHHHHHHHHHhhC
Confidence                      2467889999 76      4987776 899999998753      34788888887753

>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens}

Probab=99.56  E-value=2e-14  Score=105.38  Aligned_cols=106  Identities=15%  Similarity=0.109  Sum_probs=82.7

Q ss_pred             ccccceeEEecCCCeeeeeC---ceEEEEEecCCChhhhhhhHHHHHHHHhcCC--cEEEEEECCC-------c----HH
Q 031271           56 YCINEMVLNINDGGNVVFWV---LKVVIYYTAAWCGPCKFIEPYVKDFAAMYTD--VQFIKIDVDW-------L----PE  119 (162)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~---k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~--v~f~~vd~d~-------~----~~  119 (162)
                      ...|++.+.+.+|+.+..++   |+++|+||++||++|+...|.|.++.++|++  +.++.|++|.       .    .+
T Consensus        27 ~~~p~f~l~~~~G~~v~l~~~~Gk~vlv~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~  106 (185)
T 2gs3_A           27 RSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQGGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKE  106 (185)
T ss_dssp             CCGGGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCTTTTCCCSCHHHHHH
T ss_pred             CCcCCceeEcCCCCEeeHHHcCCCEEEEEEecCCCCchHHHHHHHHHHHHHhhcCCeEEEEEECcccCCCCCCCHHHHHH
Confidence            35688999999999887655   8999999999999999999999999998864  8999998752       1    22


Q ss_pred             HHHhcCCC-----------------------------------CCccEEEEE-cCCeEEEEEcCC-CHHHHHHHHHHHh
Q 031271          120 AAKAFDLI-----------------------------------DVLPTFVLV-KRGKEIDRVVGA-KKDELQMKTEKRR  161 (162)
Q Consensus       120 l~~~~~i~-----------------------------------~~~Ptiv~~-~~Gk~i~~~~g~-~~~~l~~~l~~~~  161 (162)
                      +++++++.                                   ..+|+++++ ++|+++.++.|. ++++|++.|++++
T Consensus       107 ~~~~~~~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~lL  185 (185)
T 2gs3_A          107 FAAGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDLPHYF  185 (185)
T ss_dssp             HHHHTTCCSEEBCCCBSSSTTBCHHHHHHTTSGGGCCSSSSSCCSSCCEEEECTTSCEEEEECTTSCGGGGGGGHHHHC
T ss_pred             HHHHcCCCCeeeeeeccCChhhhHHHHHHHhhcccccccCCcccccceEEEECCCCCEEEeeCCCCCHHHHHHHHHHhC
Confidence            33333220                                   124776666 899999999988 7888988888753

>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10

Probab=99.54  E-value=2.2e-14  Score=106.06  Aligned_cols=103  Identities=12%  Similarity=0.121  Sum_probs=85.6

Q ss_pred             cccceeEEec--CCC---eeee----eCceEEEEEe-cCCChhhhhhhHHHHHHHHhcC--CcEEEEEECCC--------
Q 031271           57 CINEMVLNIN--DGG---NVVF----WVLKVVIYYT-AAWCGPCKFIEPYVKDFAAMYT--DVQFIKIDVDW--------  116 (162)
Q Consensus        57 ~~~~~~~~~~--~~~---~~~~----~~k~vvv~F~-a~wC~~C~~~~~~l~~~~~~~~--~v~f~~vd~d~--------  116 (162)
                      ..|+|.+.+.  +|+   .+..    ..|+|+|+|| ++||++|+...|.|.++.++|+  ++.++.|+.|.        
T Consensus         6 ~~P~f~l~~~~~~G~~~~~v~l~~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~   85 (198)
T 1zof_A            6 LAPDFKAPAVLGNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSIDSEQVHFAWK   85 (198)
T ss_dssp             BCCCCEEEEECTTSCEEEEEETTTSCCSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHH
T ss_pred             cCCceEeecccCCCcccceEEHHHHhCCCcEEEEEECCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHH
Confidence            4678899888  887   6644    3589999999 9999999999999999998885  58999998874        


Q ss_pred             --------------------cHHHHHhcCCCC-----CccEEEEE-cCCeEEEEEcCC-----CHHHHHHHHHHH
Q 031271          117 --------------------LPEAAKAFDLID-----VLPTFVLV-KRGKEIDRVVGA-----KKDELQMKTEKR  160 (162)
Q Consensus       117 --------------------~~~l~~~~~i~~-----~~Ptiv~~-~~Gk~i~~~~g~-----~~~~l~~~l~~~  160 (162)
                                          ...+++.|++ .     .+|+++++ ++|+++.++.|.     +.++|++.|+++
T Consensus        86 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v-~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l  159 (198)
T 1zof_A           86 NTPVEKGGIGQVSFPMVADITKSISRDYDV-LFEEAIALRGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDAL  159 (198)
T ss_dssp             TSCGGGTCCCCCSSCEEECTTSHHHHHTTC-EETTTEECEEEEEEETTTEEEEEEEESSSCCCHHHHHHHHHHHH
T ss_pred             HhhhhcccccCceeEEEECCchHHHHHhCC-cccCCcccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHH
Confidence                                3478899999 8     99987777 799999998774     467888888765

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=99.53  E-value=2.7e-14  Score=107.56  Aligned_cols=77  Identities=12%  Similarity=0.053  Sum_probs=68.1

Q ss_pred             ecCCChhhhhhhHHHHHHHHhc--C-CcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHHHHH
Q 031271           83 TAAWCGPCKFIEPYVKDFAAMY--T-DVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQMKTE  158 (162)
Q Consensus        83 ~a~wC~~C~~~~~~l~~~~~~~--~-~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~~l~  158 (162)
                      |++||++|+.+.|.++++++++  . .+.|..||++.+++++++|+| .++||+++|++|+...++.|. +.+.+..++.
T Consensus        33 ~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~v-~~~Ptl~~~~~~~~~~~~~G~~~~~~l~~~~~  111 (229)
T 2ywm_A           33 GCESCQTAEELLKETVEVIGEAVGQDKIKLDIYSPFTHKEETEKYGV-DRVPTIVIEGDKDYGIRYIGLPAGLEFTTLIN  111 (229)
T ss_dssp             TCGGGGHHHHHHHHHHHHHHHHHCTTTEEEEEECTTTCHHHHHHTTC-CBSSEEEEESSSCCCEEEESCCCTTHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHhccCCCCceEEEEecCcccHHHHHHcCC-CcCcEEEEECCCcccceecCCccHHHHHHHHH
Confidence            4889999999999999998776  4 499999999999999999999 999999999988888888887 7888888877


Q ss_pred             HH
Q 031271          159 KR  160 (162)
Q Consensus       159 ~~  160 (162)
                      ++
T Consensus       112 ~~  113 (229)
T 2ywm_A          112 GI  113 (229)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A

Probab=99.53  E-value=7.3e-14  Score=101.54  Aligned_cols=105  Identities=10%  Similarity=0.047  Sum_probs=82.7

Q ss_pred             eeeccccceeEEecCCCeeeeeC---ceEEEEEecCC-ChhhhhhhHHHHHHHHhcCCcEEEEEECCC------------
Q 031271           53 CLIYCINEMVLNINDGGNVVFWV---LKVVIYYTAAW-CGPCKFIEPYVKDFAAMYTDVQFIKIDVDW------------  116 (162)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~---k~vvv~F~a~w-C~~C~~~~~~l~~~~~~~~~v~f~~vd~d~------------  116 (162)
                      ......|++.+.+.+|+.+..++   |++||+||++| |++|....|.|.++.++ +++.|+.|+.|.            
T Consensus        19 ~~G~~~P~f~l~~~~G~~v~l~~~~gk~vvl~F~~t~~C~~C~~~~~~l~~l~~~-~~v~vv~Is~D~~~~~~~~~~~~~   97 (175)
T 1xvq_A           19 AVGSPAPAFTLTGGDLGVISSDQFRGKSVLLNIFPSVDTPVCATSVRTFDERAAA-SGATVLCVSKDLPFAQKRFCGAEG   97 (175)
T ss_dssp             CTTSBCCCCEEECTTSCEEEGGGGTTSCEEEEECSCCCSSCCCHHHHHHHHHHHH-TTCEEEEEESSCHHHHTTCC----
T ss_pred             CcCCcCCCeEEECCCCCEEeHHHcCCCEEEEEEEeCCCCchHHHHHHHHHHHHhh-cCCEEEEEECCCHHHHHHHHHHcC
Confidence            33445788999999999887654   89999999999 99999999999999988 789999998872            


Q ss_pred             ----------cHHHHHhcCCCCCc---------cEEEEE-cCCeEEEEEcC--C-CHHHHHHHHHH
Q 031271          117 ----------LPEAAKAFDLIDVL---------PTFVLV-KRGKEIDRVVG--A-KKDELQMKTEK  159 (162)
Q Consensus       117 ----------~~~l~~~~~i~~~~---------Ptiv~~-~~Gk~i~~~~g--~-~~~~l~~~l~~  159 (162)
                                ...+++.|++ ...         |+++++ ++|+++.++.|  . ....++++|+.
T Consensus        98 ~~~~~~l~D~~~~~~~~~gv-~~~~~~~~g~~~p~~~lid~~G~I~~~~~g~~~~~~~~~~~~l~~  162 (175)
T 1xvq_A           98 TENVMPASAFRDSFGEDYGV-TIADGPMAGLLARAIVVIGADGNVAYTELVPEIAQEPNYEAALAA  162 (175)
T ss_dssp             --CEEEEECTTSSHHHHTTC-BBCSSTTTTSBCSEEEEECTTSBEEEEEECSBTTCCCCHHHHHHH
T ss_pred             CCCceEeeCCHHHHHHHhCC-cccccccCCcccceEEEECCCCeEEEEEECCCcCCCCCHHHHHHH
Confidence                      2458889999 777         776666 89999998864  2 33345554443

>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A

Probab=99.53  E-value=1.3e-13  Score=99.07  Aligned_cols=108  Identities=20%  Similarity=0.273  Sum_probs=84.7

Q ss_pred             eeccccceeEEecCCCeeeeeC---ceEEEEEecCCCh-hhhhhhHHHHHHHHhcC----CcEEEEEECCC---cH----
Q 031271           54 LIYCINEMVLNINDGGNVVFWV---LKVVIYYTAAWCG-PCKFIEPYVKDFAAMYT----DVQFIKIDVDW---LP----  118 (162)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~---k~vvv~F~a~wC~-~C~~~~~~l~~~~~~~~----~v~f~~vd~d~---~~----  118 (162)
                      .....|++.+.+.+|+.+..++   |+|+|+||++||+ +|....+.|.++.++|+    ++.++.|++|.   .+    
T Consensus         9 ~g~~~p~f~l~~~~G~~~~l~~~~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~d~~~~~~   88 (174)
T 1xzo_A            9 LNYEVEPFTFQNQDGKNVSLESLKGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVDPENDKPKQLK   88 (174)
T ss_dssp             CCEECCCCEEECTTSCEEETGGGTTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCCHHHHH
T ss_pred             cccccCCcEEEcCCCCEEehhhcCCCEEEEEEEcCCCcchhHHHHHHHHHHHHHhhhcCCcEEEEEEEeCCCCCCHHHHH
Confidence            4445788999999999887665   8999999999999 99999999999988774    39999998862   11    


Q ss_pred             ---------------------HHHHh----------------cCCCCCccEEEEE-cCCeEEEEEcCC---CHHHHHHHH
Q 031271          119 ---------------------EAAKA----------------FDLIDVLPTFVLV-KRGKEIDRVVGA---KKDELQMKT  157 (162)
Q Consensus       119 ---------------------~l~~~----------------~~i~~~~Ptiv~~-~~Gk~i~~~~g~---~~~~l~~~l  157 (162)
                                           ++.+.                |++ ..+|+++++ ++|+++.++.|.   +.++|++.|
T Consensus        89 ~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~lid~~G~i~~~~~g~~~~~~~~l~~~l  167 (174)
T 1xzo_A           89 KFAANYPLSFDNWDFLTGYSQSEIEEFALKSFKAIVKKPEGEDQV-IHQSSFYLVGPDGKVLKDYNGVENTPYDDIISDV  167 (174)
T ss_dssp             HHHTTSCCCGGGEEEEBCSCHHHHHHHHHHHHCCCCCCCSSCCSC-CSCCEEEEECTTSEEEEEEESSSSCCHHHHHHHH
T ss_pred             HHHHHcCCCCcceEEEeCCCHHHHHHHHHhhcCeeEeecCCCCee-eeeeEEEEECCCCeEEEEEcCCCCCCHHHHHHHH
Confidence                                 11121                245 668876666 899999999987   378999999


Q ss_pred             HHHhC
Q 031271          158 EKRRN  162 (162)
Q Consensus       158 ~~~~~  162 (162)
                      +++++
T Consensus       168 ~~ll~  172 (174)
T 1xzo_A          168 KSAST  172 (174)
T ss_dssp             HHHTC
T ss_pred             HHHHh
Confidence            88753

>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A

Probab=99.52  E-value=1.2e-13  Score=102.61  Aligned_cols=103  Identities=15%  Similarity=0.105  Sum_probs=78.2

Q ss_pred             ccceeEEecCCCeeeeeC---ceEEEEEecCCChh-hhhhhHHHHHHHHhcC-----CcEEEEEECCC------------
Q 031271           58 INEMVLNINDGGNVVFWV---LKVVIYYTAAWCGP-CKFIEPYVKDFAAMYT-----DVQFIKIDVDW------------  116 (162)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~---k~vvv~F~a~wC~~-C~~~~~~l~~~~~~~~-----~v~f~~vd~d~------------  116 (162)
                      .|++.+.+.+|+.+..++   |++||+||++||++ |....|.|.++.+++.     ++.++.|++|.            
T Consensus        21 ~p~f~l~d~~G~~v~l~~~~Gk~vlv~F~at~C~~vC~~~~~~l~~l~~~~~~~~~~~v~vv~Is~D~~~d~~~~~~~~~  100 (200)
T 2b7k_A           21 GGPFHLEDMYGNEFTEKNLLGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDPARDSPAVLKEYL  100 (200)
T ss_dssp             CCCCEEEETTSCEEEGGGGTTSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESCTTTCCHHHHHHHH
T ss_pred             CCCEEEEcCCCCEEeHHHcCCCEEEEEEECCCCcchhHHHHHHHHHHHHHHHHhhCCceEEEEEECCCCCCCHHHHHHHH
Confidence            388999999999887655   89999999999998 9999999988766553     58888888873            


Q ss_pred             ----------------cHHHHHhcCCCC-Ccc---------------E-EEEEcCCeEEEEEcCC-CHHHHHHHHHHHh
Q 031271          117 ----------------LPEAAKAFDLID-VLP---------------T-FVLVKRGKEIDRVVGA-KKDELQMKTEKRR  161 (162)
Q Consensus       117 ----------------~~~l~~~~~i~~-~~P---------------t-iv~~~~Gk~i~~~~g~-~~~~l~~~l~~~~  161 (162)
                                      ...+++.||+ . ..|               + +++.++|+++.++.|. +++.+.+.|.+++
T Consensus       101 ~~~~~~~~~l~~~~d~~~~~~~~~gv-~~~~p~~~~~~~~~~~~~~~~~~liD~~G~i~~~~~g~~~~~~~~~~i~~~l  178 (200)
T 2b7k_A          101 SDFHPSILGLTGTFDEVKNACKKYRV-YFSTPPNVKPGQDYLVDHSIFFYLMDPEGQFVDALGRNYDEKTGVDKIVEHV  178 (200)
T ss_dssp             TTSCTTCEEEECCHHHHHHHHHHTTC---------------CTTTCCCEEEECTTSCEEEEECTTCCTTHHHHHHHHHH
T ss_pred             HHcCCCceEEeCCHHHHHHHHHHcCc-EEeeccccCCCCCceeeecceEEEECCCCcEEEEeCCCCCHHHHHHHHHHHH
Confidence                            1247788888 6 444               4 4444899999999886 6666666666543

>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10

Probab=99.49  E-value=1.6e-13  Score=101.93  Aligned_cols=104  Identities=10%  Similarity=0.057  Sum_probs=85.2

Q ss_pred             ccccceeEEec--CC--CeeeeeC---ceEEEEEe-cCCChhhhhhhHHHHHHHHhc--CCcEEEEEECCC---------
Q 031271           56 YCINEMVLNIN--DG--GNVVFWV---LKVVIYYT-AAWCGPCKFIEPYVKDFAAMY--TDVQFIKIDVDW---------  116 (162)
Q Consensus        56 ~~~~~~~~~~~--~~--~~~~~~~---k~vvv~F~-a~wC~~C~~~~~~l~~~~~~~--~~v~f~~vd~d~---------  116 (162)
                      ...|+|.+.+.  +|  +.+..++   |++||+|| ++||++|....|.|.++.++|  .++.|+.|++|.         
T Consensus        10 ~~aP~f~l~~~~~~g~~~~v~l~~~~gk~vvl~F~~~~~C~~C~~~~~~l~~l~~~~~~~~v~vi~Is~D~~~~~~~~~~   89 (202)
T 1uul_A           10 HPAPDFNETALMPNGTFKKVALTSYKGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIGCEVLACSMDSEYSHLAWTS   89 (202)
T ss_dssp             SBCCCCEEEEECTTSCEEEEEGGGGTTSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHH
T ss_pred             CcCCCcEeeeeecCCCccEEEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHH
Confidence            45688888887  67  6665544   89999999 999999999999999999988  459999998874         


Q ss_pred             -------------------cHHHHHhcCCCC------CccEEEEE-cCCeEEEEEcCC-----CHHHHHHHHHHH
Q 031271          117 -------------------LPEAAKAFDLID------VLPTFVLV-KRGKEIDRVVGA-----KKDELQMKTEKR  160 (162)
Q Consensus       117 -------------------~~~l~~~~~i~~------~~Ptiv~~-~~Gk~i~~~~g~-----~~~~l~~~l~~~  160 (162)
                                         ..++++.|++ .      .+|+++++ ++|+++.++.|.     +.+++++.|+++
T Consensus        90 ~~~~~~~~~~~~~p~l~D~~~~~~~~ygv-~~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~ell~~l~~l  163 (202)
T 1uul_A           90 IERKRGGLGQMNIPILADKTKCIMKSYGV-LKEEDGVAYRGLFIIDPKQNLRQITVNDLPVGRDVDEALRLVKAF  163 (202)
T ss_dssp             SCGGGTCCCSCSSCEEECTTCHHHHHHTC-EETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             HHHhhCCCCCCceeEEECCchHHHHHcCC-ccCCCCceeeEEEEECCCCEEEEEEeCCCCCCCCHHHHHHHHHHh
Confidence                               3468889999 8      99987777 899999987664     358888888765

>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=99.48  E-value=7.7e-14  Score=93.09  Aligned_cols=78  Identities=15%  Similarity=0.241  Sum_probs=65.7

Q ss_pred             ceEEEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECC--CcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCCCHHHH
Q 031271           76 LKVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVD--WLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDEL  153 (162)
Q Consensus        76 k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d--~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~~~~~l  153 (162)
                      .++++.||++||++|+++.+.|+++.+   ++.|..+|++  ++++++++||  ..+|++  +.+|+.+ ...|+++++|
T Consensus        16 ~~~v~~f~~~~C~~C~~~~~~L~~l~~---~i~~~~vdi~~~~~~el~~~~g--~~vP~l--~~~g~~~-~~~g~~~~~l   87 (100)
T 1wjk_A           16 LPVLTLFTKAPCPLCDEAKEVLQPYKD---RFILQEVDITLPENSTWYERYK--FDIPVF--HLNGQFL-MMHRVNTSKL   87 (100)
T ss_dssp             CCEEEEEECSSCHHHHHHHHHTSTTSS---SSEEEEEETTSSTTHHHHHHSS--SSCSEE--EESSSEE-EESSCCHHHH
T ss_pred             CCEEEEEeCCCCcchHHHHHHHHHhhh---CCeEEEEECCCcchHHHHHHHC--CCCCEE--EECCEEE-EecCCCHHHH
Confidence            455889999999999999999987643   4899999999  8899999999  699976  4588876 4667799999


Q ss_pred             HHHHHHHh
Q 031271          154 QMKTEKRR  161 (162)
Q Consensus       154 ~~~l~~~~  161 (162)
                      +++|++++
T Consensus        88 ~~~l~~~~   95 (100)
T 1wjk_A           88 EKQLRKLS   95 (100)
T ss_dssp             HHHHHSSS
T ss_pred             HHHHHHHH
Confidence            99998764

>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A

Probab=99.48  E-value=3e-13  Score=96.54  Aligned_cols=106  Identities=13%  Similarity=0.130  Sum_probs=85.3

Q ss_pred             eecccccee--EEecCCCeeeeeC---ceEEEEEec-CCChhhhhhhHHHHHHHHhcC--CcEEEEEECCC---------
Q 031271           54 LIYCINEMV--LNINDGGNVVFWV---LKVVIYYTA-AWCGPCKFIEPYVKDFAAMYT--DVQFIKIDVDW---------  116 (162)
Q Consensus        54 ~~~~~~~~~--~~~~~~~~~~~~~---k~vvv~F~a-~wC~~C~~~~~~l~~~~~~~~--~v~f~~vd~d~---------  116 (162)
                      .....|+|.  +.+.+|+.+..++   |+++|+||+ +||++|....|.|.++.++|+  ++.++.|..|.         
T Consensus         9 ~G~~~P~f~~~l~~~~G~~~~l~~~~gk~~vl~F~~~~~c~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~   88 (163)
T 3gkn_A            9 LELPAATFDLPLSLSGGTQTTLRAHAGHWLVIYFYPKDSTPGATTEGLDFNALLPEFDKAGAKILGVSRDSVKSHDNFCA   88 (163)
T ss_dssp             CCCCGGGGGCCEECSTTCEECSGGGTTSCEEEEECSCTTSHHHHHHHHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHH
T ss_pred             cCCcCCCccccccCCCCCEEEHHHhCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHH
Confidence            344578899  9999999887665   899999998 999999999999999998885  48899888862         


Q ss_pred             ------------cHHHHHhcCCCCC------------ccEEEEE-cCCeEEEEEcCCC----HHHHHHHHHHH
Q 031271          117 ------------LPEAAKAFDLIDV------------LPTFVLV-KRGKEIDRVVGAK----KDELQMKTEKR  160 (162)
Q Consensus       117 ------------~~~l~~~~~i~~~------------~Ptiv~~-~~Gk~i~~~~g~~----~~~l~~~l~~~  160 (162)
                                  ...+++.|++ ..            +|+++++ ++|+++..+.+..    .+++.+.|+++
T Consensus        89 ~~~~~~~~~~d~~~~~~~~~~v-~~~~~~~~~~~~~~~p~~~lid~~G~i~~~~~~~~~~~~~~~il~~l~~l  160 (163)
T 3gkn_A           89 KQGFAFPLVSDGDEALCRAFDV-IKEKNMYGKQVLGIERSTFLLSPEGQVVQAWRKVKVAGHADAVLAALKAH  160 (163)
T ss_dssp             HHCCSSCEEECTTCHHHHHTTC-EEEEEETTEEEEEECCEEEEECTTSCEEEEECSCCSTTHHHHHHHHHHHH
T ss_pred             HhCCCceEEECCcHHHHHHhCC-ccccccccccccCcceEEEEECCCCeEEEEEcCCCcccCHHHHHHHHHHH
Confidence                        2357788888 76            8988777 7999998886652    46666666654

>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10

Probab=99.47  E-value=3.4e-13  Score=99.21  Aligned_cols=103  Identities=19%  Similarity=0.240  Sum_probs=84.6

Q ss_pred             cccceeEEec--CC--Ceeee----eCceEEEEEe-cCCChhhhhhhHHHHHHHHhc--CCcEEEEEECCC---------
Q 031271           57 CINEMVLNIN--DG--GNVVF----WVLKVVIYYT-AAWCGPCKFIEPYVKDFAAMY--TDVQFIKIDVDW---------  116 (162)
Q Consensus        57 ~~~~~~~~~~--~~--~~~~~----~~k~vvv~F~-a~wC~~C~~~~~~l~~~~~~~--~~v~f~~vd~d~---------  116 (162)
                      ..|+|.+.+.  +|  +.+..    ..|++||+|| ++||++|....|.|.++.++|  .++.++.|+.|.         
T Consensus         5 ~aP~f~l~~~~~~G~~~~~~l~~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~   84 (192)
T 2h01_A            5 QAPSFKAEAVFGDNTFGEVSLSDFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKERNVELLGCSVDSKFTHLAWKK   84 (192)
T ss_dssp             BCCCCEEEEECTTSCEEEEEGGGGTTTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHT
T ss_pred             cCCCcEeEeeecCCceeEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEeCCHHHHHHHHH
Confidence            4578888888  88  66644    3489999999 999999999999999999888  469999998863         


Q ss_pred             -------------------cHHHHHhcCCCC-----CccEEEEE-cCCeEEEEEcCC-----CHHHHHHHHHHH
Q 031271          117 -------------------LPEAAKAFDLID-----VLPTFVLV-KRGKEIDRVVGA-----KKDELQMKTEKR  160 (162)
Q Consensus       117 -------------------~~~l~~~~~i~~-----~~Ptiv~~-~~Gk~i~~~~g~-----~~~~l~~~l~~~  160 (162)
                                         ..++++.|++ .     .+|+++++ ++|+++.+..|.     +.+++++.|+++
T Consensus        85 ~~~~~~~~~~~~~~~l~D~~~~~~~~~gv-~~~~g~~~P~~~liD~~G~i~~~~~g~~~~~~~~~~l~~~l~~l  157 (192)
T 2h01_A           85 TPLSQGGIGNIKHTLISDISKSIARSYDV-LFNESVALRAFVLIDKQGVVQHLLVNNLALGRSVDEILRLIDAL  157 (192)
T ss_dssp             SCGGGTCCCSCSSEEEECTTSHHHHHTTC-EETTTEECCEEEEECTTSBEEEEEEGGGSSGGGHHHHHHHHHHH
T ss_pred             hHHhhCCccCCCcCeEECCcHHHHHHhCC-cCcCCceeeEEEEEcCCCEEEEEEeCCCCCCCCHHHHHHHHHHH
Confidence                               2368889999 8     89998888 899999988774     367787777754

>2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens}

Probab=99.47  E-value=1.1e-12  Score=99.08  Aligned_cols=106  Identities=12%  Similarity=0.050  Sum_probs=82.5

Q ss_pred             eeccccceeEEecC-CCeeeeeC---ceEEEEEecCCChhhhhhhHHHHHHHHhcC--CcEEEEEECCC--------c--
Q 031271           54 LIYCINEMVLNIND-GGNVVFWV---LKVVIYYTAAWCGPCKFIEPYVKDFAAMYT--DVQFIKIDVDW--------L--  117 (162)
Q Consensus        54 ~~~~~~~~~~~~~~-~~~~~~~~---k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~--~v~f~~vd~d~--------~--  117 (162)
                      .....|+|.+.+.+ |+.+..++   |+|||+|||+||++|+ ..|.|+++.++|.  ++.++.|.+++        .  
T Consensus        31 ~~~~~pdF~l~d~~~G~~v~Lsd~~GKvvll~FwAt~C~~c~-e~p~L~~l~~~~~~~g~~Vlgvs~d~f~~~e~~~~~~  109 (215)
T 2i3y_A           31 EKGTIYDYEAIALNKNEYVSFKQYVGKHILFVNVATYCGLTA-QYPELNALQEELKPYGLVVLGFPCNQFGKQEPGDNKE  109 (215)
T ss_dssp             CCCCGGGCEEEBSSSSCEEEGGGGTTSEEEEEEECSSSGGGG-GHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCHHH
T ss_pred             ccCCcCCcEeeeCCCCCEEcHHHhCCCEEEEEEeCCCCCChH-hHHHHHHHHHHhccCCeEEEEEEccccCcCCCCCHHH
Confidence            34457889999999 99887766   9999999999999999 8899999999886  38899887642        1  


Q ss_pred             -HHHHH------hcCCCC--------------------------------C--------------c---cEEEEE-cCCe
Q 031271          118 -PEAAK------AFDLID--------------------------------V--------------L---PTFVLV-KRGK  140 (162)
Q Consensus       118 -~~l~~------~~~i~~--------------------------------~--------------~---Ptiv~~-~~Gk  140 (162)
                       .++++      +|++ .                                +              +   |+.+++ ++|+
T Consensus       110 i~~f~~~~~~~~~~~~-~fpll~d~d~~g~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~p~~~~~i~~npttfLID~~G~  188 (215)
T 2i3y_A          110 ILPGLKYVRPGGGFVP-SFQLFEKGDVNGEKEQKVFSFLKHSCPHPSEILGTFKSISWDPVKVHDIRWNFEKFLVGPDGI  188 (215)
T ss_dssp             HHHHHHHTSSCTTCCC-SSEEBCCCCSSSTTCCHHHHHHHHHSCCSCSCCCCTTTCCSSSCCTTCCCSTTCEEEECTTSC
T ss_pred             HHHHHHhccchhccCc-cceeEeeeccCCcccchHHHHHHhhCcccccccccccccccccccccccccCceEEEECCCCe
Confidence             23444      5544 1                                0              1   554444 8999


Q ss_pred             EEEEEcCC-CHHHHHHHHHHHh
Q 031271          141 EIDRVVGA-KKDELQMKTEKRR  161 (162)
Q Consensus       141 ~i~~~~g~-~~~~l~~~l~~~~  161 (162)
                      ++.++.|. ++++|++.|++++
T Consensus       189 vv~~~~g~~~~~~l~~~I~~ll  210 (215)
T 2i3y_A          189 PVMRWSHRATVSSVKTDILAYL  210 (215)
T ss_dssp             EEEEECTTSCHHHHHHHHHHHG
T ss_pred             EEEEeCCCCCHHHHHHHHHHHH
Confidence            99999887 8899999998765

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=99.46  E-value=4e-13  Score=113.08  Aligned_cols=78  Identities=17%  Similarity=0.239  Sum_probs=71.1

Q ss_pred             eEEEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHH
Q 031271           77 KVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQM  155 (162)
Q Consensus        77 ~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~  155 (162)
                      ..++.||++||++|+++.|.+++++.+++++.+..+|++..++++.+|++ .++|++++  ||+.+.+  |. +.++|.+
T Consensus       119 ~~i~~f~a~~C~~C~~~~~~l~~~a~~~~~v~~~~vd~~~~~~~~~~~~i-~svPt~~i--~g~~~~~--G~~~~~~l~~  193 (521)
T 1hyu_A          119 FEFETYYSLSCHNCPDVVQALNLMAVLNPRIKHTAIDGGTFQNEITERNV-MGVPAVFV--NGKEFGQ--GRMTLTEIVA  193 (521)
T ss_dssp             EEEEEEECTTCSSHHHHHHHHHHHHHHCTTEEEEEEETTTCHHHHHHTTC-CSSSEEEE--TTEEEEE--SCCCHHHHHH
T ss_pred             cceEEEECCCCcCcHHHHHHHHHHHhHcCceEEEEEechhhHHHHHHhCC-CccCEEEE--CCEEEec--CCCCHHHHHH
Confidence            34899999999999999999999999999999999999999999999999 99999977  9998865  77 8889988


Q ss_pred             HHHH
Q 031271          156 KTEK  159 (162)
Q Consensus       156 ~l~~  159 (162)
                      ++.+
T Consensus       194 ~l~~  197 (521)
T 1hyu_A          194 KVDT  197 (521)
T ss_dssp             HHCC
T ss_pred             HHhh
Confidence            8754

>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10

Probab=99.46  E-value=5.1e-13  Score=100.80  Aligned_cols=105  Identities=10%  Similarity=0.069  Sum_probs=84.8

Q ss_pred             eccccceeEEe---cCCCeeeeeC---ceEEEEEe-cCCChhhhhhhHHHHHHHHhc--CCcEEEEEECCC---------
Q 031271           55 IYCINEMVLNI---NDGGNVVFWV---LKVVIYYT-AAWCGPCKFIEPYVKDFAAMY--TDVQFIKIDVDW---------  116 (162)
Q Consensus        55 ~~~~~~~~~~~---~~~~~~~~~~---k~vvv~F~-a~wC~~C~~~~~~l~~~~~~~--~~v~f~~vd~d~---------  116 (162)
                      ....|+|.+.+   .+|+.+..++   |++||+|| ++||++|....|.|.++.++|  .++.++.|++|.         
T Consensus        30 G~~aP~f~l~~~~~~~g~~v~l~d~~Gk~vll~F~pa~~Cp~C~~~~~~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~  109 (220)
T 1zye_A           30 TQHAPYFKGTAVVSGEFKEISLDDFKGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNCEVVAVSVDSHFSHLAWIN  109 (220)
T ss_dssp             TSBCCCCEEEEECSSSEEEEEGGGGTTSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHT
T ss_pred             CCCCCCcEEEeeeCCCCcEEEHHHhCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHH
Confidence            34567888874   4566665544   89999999 999999999999999999988  469999998863         


Q ss_pred             -------------------cHHHHHhcCCCC------CccEEEEE-cCCeEEEEEcCC-----CHHHHHHHHHHH
Q 031271          117 -------------------LPEAAKAFDLID------VLPTFVLV-KRGKEIDRVVGA-----KKDELQMKTEKR  160 (162)
Q Consensus       117 -------------------~~~l~~~~~i~~------~~Ptiv~~-~~Gk~i~~~~g~-----~~~~l~~~l~~~  160 (162)
                                         ..++++.|++ .      .+|+++++ ++|+++.+..|.     +.+++++.|+++
T Consensus       110 ~~~~~~g~~~~~fp~l~D~~~~i~~~ygv-~~~~~g~~~P~~~liD~~G~I~~~~~g~~~~~~~~~ell~~l~~l  183 (220)
T 1zye_A          110 TPRKNGGLGHMNIALLSDLTKQISRDYGV-LLEGPGLALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAF  183 (220)
T ss_dssp             SCGGGTCCCSCSSEEEECTTSHHHHHTTC-EETTTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHH
T ss_pred             HHHHhCCCcCCceEEEECCcHHHHHHhCC-eecCCCcccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence                               2468899999 8      99998888 899999887664     457888888765

>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A

Probab=99.45  E-value=6.9e-13  Score=99.66  Aligned_cols=105  Identities=17%  Similarity=0.162  Sum_probs=85.0

Q ss_pred             eccccceeEEec--CC--Ceeee----eCceEEEEEe-cCCChhhhhhhHHHHHHHHhc--CCcEEEEEECCC-------
Q 031271           55 IYCINEMVLNIN--DG--GNVVF----WVLKVVIYYT-AAWCGPCKFIEPYVKDFAAMY--TDVQFIKIDVDW-------  116 (162)
Q Consensus        55 ~~~~~~~~~~~~--~~--~~~~~----~~k~vvv~F~-a~wC~~C~~~~~~l~~~~~~~--~~v~f~~vd~d~-------  116 (162)
                      ....|+|.+.+.  +|  +.+..    ..|++||+|| ++||++|....|.|.++.++|  .++.++.|++|.       
T Consensus        24 G~~aP~f~l~~~~~~G~~~~v~l~d~~~gk~vvl~F~pa~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~  103 (213)
T 2i81_A           24 GKEAPFFKAEAVFGDNSFGEVNLTQFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDAFHERNVELLGCSVDSKYTHLAW  103 (213)
T ss_dssp             TSBCCCCEEEEECTTSCEEEEEGGGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHH
T ss_pred             CCcCCCeEeeccccCCceeEEeHHHHcCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHH
Confidence            335688999988  78  66644    3489999999 999999999999999999988  469999998763       


Q ss_pred             ---------------------cHHHHHhcCCCC-----CccEEEEE-cCCeEEEEEcCC-----CHHHHHHHHHHH
Q 031271          117 ---------------------LPEAAKAFDLID-----VLPTFVLV-KRGKEIDRVVGA-----KKDELQMKTEKR  160 (162)
Q Consensus       117 ---------------------~~~l~~~~~i~~-----~~Ptiv~~-~~Gk~i~~~~g~-----~~~~l~~~l~~~  160 (162)
                                           ..++++.|++ .     .+|+++++ ++|+++.+..|.     +.+++++.|+++
T Consensus       104 ~~~~~~~~g~~~~~fp~l~D~~~~~~~~ygv-~~~~g~~~p~~~lID~~G~i~~~~~~~~~~~~~~~ell~~l~~l  178 (213)
T 2i81_A          104 KKTPLAKGGIGNIKHTLLSDITKSISKDYNV-LFDDSVSLRAFVLIDMNGIVQHLLVNNLAIGRSVDEILRIIDAI  178 (213)
T ss_dssp             HSSCGGGTCCCSCSSEEEECTTSHHHHHTTC-EETTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHH
T ss_pred             HHHHHhhCCccCCCceEEECCchHHHHHhCC-ccccCCcccEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHH
Confidence                                 3468889999 8     89987776 899999987653     478888888764

>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10

Probab=99.45  E-value=1.6e-12  Score=93.19  Aligned_cols=107  Identities=8%  Similarity=-0.038  Sum_probs=84.3

Q ss_pred             eeeeccccceeEEecCCCeeeeeC---ceEEEEEec-CCChhhhhhhHHHHHHHHhcCCcEEEEEECCC-----------
Q 031271           52 FCLIYCINEMVLNINDGGNVVFWV---LKVVIYYTA-AWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDW-----------  116 (162)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~---k~vvv~F~a-~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~-----------  116 (162)
                      .......|++.+.+.+|+.+..++   |+++|+||+ +||++|....|.|.++.++|.++.++.|+.|.           
T Consensus        16 ~~~G~~~P~f~l~~~~G~~v~l~~~~gk~vvl~F~~~~~c~~C~~~~~~l~~~~~~~~~v~vv~is~d~~~~~~~~~~~~   95 (163)
T 1psq_A           16 LQVGDKALDFSLTTTDLSKKSLADFDGKKKVLSVVPSIDTGICSTQTRRFNEELAGLDNTVVLTVSMDLPFAQKRWCGAE   95 (163)
T ss_dssp             CCTTSBCCCCEEECTTSCEEEGGGGTTSEEEEEECSCTTSHHHHHHHHHHHHHTTTCTTEEEEEEESSCHHHHHHHHHHH
T ss_pred             CCCCCCCCCEEEEcCCCcEeeHHHhCCCEEEEEEECCCCCCccHHHHHHHHHHHHHcCCcEEEEEECCCHHHHHHHHHhc
Confidence            334446788999999999887765   899999995 99999999999999999888668888887752           


Q ss_pred             ------------cHHHHHhcCCCC----C--ccEEEEE-cCCeEEEEEcCC------CHHHHHHHHHH
Q 031271          117 ------------LPEAAKAFDLID----V--LPTFVLV-KRGKEIDRVVGA------KKDELQMKTEK  159 (162)
Q Consensus       117 ------------~~~l~~~~~i~~----~--~Ptiv~~-~~Gk~i~~~~g~------~~~~l~~~l~~  159 (162)
                                  ...+++.|++ .    +  .|+++++ ++|+++.++.|.      +.+++.+.|++
T Consensus        96 ~~~~~~~l~D~~~~~~~~~~gv-~~~~~g~~~p~~~liD~~G~i~~~~~g~~~~~~~~~~~~l~~l~~  162 (163)
T 1psq_A           96 GLDNAIMLSDYFDHSFGRDYAL-LINEWHLLARAVFVLDTDNTIRYVEYVDNINSEPNFEAAIAAAKA  162 (163)
T ss_dssp             TCTTSEEEECTTTCHHHHHHTC-BCTTTCSBCCEEEEECTTCBEEEEEECSBTTSCCCHHHHHHHHHH
T ss_pred             CCCCcEEecCCchhHHHHHhCC-ccccCCceEEEEEEEcCCCeEEEEEecCCcCCCCCHHHHHHHHHh
Confidence                        2356777887 5    3  3887777 799999998763      23778877765

>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A

Probab=99.44  E-value=2.3e-13  Score=87.19  Aligned_cols=75  Identities=11%  Similarity=0.235  Sum_probs=62.8

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCc----HHHHHhcC--CCCCccEEEEEcCCeEEEEEcCCCHHH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWL----PEAAKAFD--LIDVLPTFVLVKRGKEIDRVVGAKKDE  152 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~----~~l~~~~~--i~~~~Ptiv~~~~Gk~i~~~~g~~~~~  152 (162)
                      ++.|+++||++|+.+.+.|++++.+++++.|..+|++.+    .++.++++  + ..+|+++  .+|+.+.   |.  ++
T Consensus         3 v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~vdi~~~~~~~~~l~~~~~~~~-~~vP~i~--~~g~~i~---~~--~~   74 (85)
T 1ego_A            3 TVIFGRSGCPYCVRAKDLAEKLSNERDDFQYQYVDIRAEGITKEDLQQKAGKPV-ETVPQIF--VDQQHIG---GY--TD   74 (85)
T ss_dssp             EEEECCTTSTHHHHHHHHHHHHHHHHSSCEEEEECHHHHTCCSHHHHHHTCCCS-CCSCEEE--ETTEEEE---SS--HH
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHhcCCCceEEEEecccChHHHHHHHHHhCCCC-ceeCeEE--ECCEEEE---CH--HH
Confidence            678999999999999999999999888899999999765    38999999  9 9999983  4887764   33  67


Q ss_pred             HHHHHHHHh
Q 031271          153 LQMKTEKRR  161 (162)
Q Consensus       153 l~~~l~~~~  161 (162)
                      |++++++.+
T Consensus        75 l~~~~~~~~   83 (85)
T 1ego_A           75 FAAWVKENL   83 (85)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhc
Confidence            888887653

>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A

Probab=99.43  E-value=5.1e-14  Score=95.37  Aligned_cols=75  Identities=17%  Similarity=0.310  Sum_probs=58.7

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCc-----HHHHHhcCCCCCccEEEEEcCCeEEEEEcCC----C
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWL-----PEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA----K  149 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~-----~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~----~  149 (162)
                      ++ ||++||++|+.+.|.|+++...   +.++.+|.+..     .+++++|++ .++|++  |.+|+.+.++.|.    +
T Consensus        23 v~-f~a~~C~~C~~~~~~l~~~~~~---~~~v~v~~~~~~~~~~~~l~~~~~v-~~~Pt~--~~~g~~v~~~~~~~~~~~   95 (116)
T 2e7p_A           23 VV-FSKTYCGYCNRVKQLLTQVGAS---YKVVELDELSDGSQLQSALAHWTGR-GTVPNV--FIGGKQIGGCDTVVEKHQ   95 (116)
T ss_dssp             EE-EECTTCHHHHHHHHHHHHHTCC---CEEEEGGGSTTHHHHHHHHHHHHSC-CSSCEE--EETTEEEECHHHHHHHHH
T ss_pred             EE-EECCCChhHHHHHHHHHHcCCC---eEEEEccCCCChHHHHHHHHHHhCC-CCcCEE--EECCEEECChHHHHHHHh
Confidence            55 9999999999999999988543   56666666665     568999999 999999  4589988766554    4


Q ss_pred             HHHHHHHHHHH
Q 031271          150 KDELQMKTEKR  160 (162)
Q Consensus       150 ~~~l~~~l~~~  160 (162)
                      .+.|.++|+++
T Consensus        96 ~~~l~~~l~~~  106 (116)
T 2e7p_A           96 RNELLPLLQDA  106 (116)
T ss_dssp             TTCHHHHHHHT
T ss_pred             CChHHHHHHHc
Confidence            55687887754

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=99.43  E-value=5e-13  Score=102.36  Aligned_cols=78  Identities=15%  Similarity=0.180  Sum_probs=68.3

Q ss_pred             EEEEecCC--ChhhhhhhHHHHHHHHhcCC------cEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-C
Q 031271           79 VIYYTAAW--CGPCKFIEPYVKDFAAMYTD------VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-K  149 (162)
Q Consensus        79 vv~F~a~w--C~~C~~~~~~l~~~~~~~~~------v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~  149 (162)
                      +|.||++|  |++|+.+.+.++++++.++.      +.|+.+|.+++++++.+||| .++||++++ +|  ..++.|. .
T Consensus        29 ~v~~~~~~~~c~~c~~~~~~l~ela~~~~~~~~~~~v~~~~vd~d~~~~~~~~~gv-~~~Pt~~i~-~g--~~~~~G~~~  104 (243)
T 2hls_A           29 EVHVFLSKSGCETCEDTLRLMKLFEEESPTRNGGKLLKLNVYYRESDSDKFSEFKV-ERVPTVAFL-GG--EVRWTGIPA  104 (243)
T ss_dssp             EEEEEECSSSCTTHHHHHHHHHHHHHHSCEETTEESEEEEEEETTTTHHHHHHTTC-CSSSEEEET-TT--TEEEESCCC
T ss_pred             EEEEEeCCCCCCchHHHHHHHHHHHHhccCCCCCceeEEEEecCCcCHHHHHhcCC-CcCCEEEEE-CC--ceeEcCCCc
Confidence            89999999  99999999999999998765      99999999999999999999 999999998 66  5667676 5


Q ss_pred             HHHHHHHHHHH
Q 031271          150 KDELQMKTEKR  160 (162)
Q Consensus       150 ~~~l~~~l~~~  160 (162)
                      ...+..++..+
T Consensus       105 ~~~l~~fv~~~  115 (243)
T 2hls_A          105 GEEIRALVEVI  115 (243)
T ss_dssp             TTHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            66777776654

>2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus}

Probab=99.43  E-value=2.3e-12  Score=92.92  Aligned_cols=106  Identities=14%  Similarity=0.083  Sum_probs=83.5

Q ss_pred             eeeccccceeEEecCCCeeeeeC---ceEEEEEe-cCCChhhhhhhHHHHHHHHhcCCcEEEEEECCC------------
Q 031271           53 CLIYCINEMVLNINDGGNVVFWV---LKVVIYYT-AAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDW------------  116 (162)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~---k~vvv~F~-a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~------------  116 (162)
                      ......|++.+.+.+|+.+..++   |+++|+|| ++||++|....|.|.++.++|.++.++.|..|.            
T Consensus        22 ~~g~~~P~f~l~~~~G~~~~l~~~~gk~vvl~f~~~~~C~~C~~~~~~l~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~  101 (171)
T 2yzh_A           22 KVGDRAPEAVVVTKDLQEKIVGGAKDVVQVIITVPSLDTPVCETETKKFNEIMAGMEGVDVTVVSMDLPFAQKRFCESFN  101 (171)
T ss_dssp             CTTSBCCCEEEEETTSCEEEESSCCSSEEEEEECSCTTSHHHHHHHHHHHHHTTTCTTEEEEEEESSCHHHHHHHHHHTT
T ss_pred             CCCCcCCceEEECCCCCEeeHHHhCCCeEEEEEECCCCCCchHHHHHHHHHHHHHcCCceEEEEeCCCHHHHHHHHHHcC
Confidence            33445788999999999887765   89999999 899999999999999999888668888887752            


Q ss_pred             -----------cHHHHHhcCCCCC---------ccEEEEE-cCCeEEEEEcCC------CHHHHHHHHHHH
Q 031271          117 -----------LPEAAKAFDLIDV---------LPTFVLV-KRGKEIDRVVGA------KKDELQMKTEKR  160 (162)
Q Consensus       117 -----------~~~l~~~~~i~~~---------~Ptiv~~-~~Gk~i~~~~g~------~~~~l~~~l~~~  160 (162)
                                 ...+ +.|++ ..         .|+++++ ++|+++.++.|.      +.+++.+.|+++
T Consensus       102 ~~~~~~l~D~~~~~~-~~~gv-~~~~~~~~g~~~p~~~liD~~G~i~~~~~~~~~~~~~~~~~ll~~l~~l  170 (171)
T 2yzh_A          102 IQNVTVASDFRYRDM-EKYGV-LIGEGALKGILARAVFIIDKEGKVAYVQLVPEITEEPNYDEVVNKVKEL  170 (171)
T ss_dssp             CCSSEEEECTTTCGG-GGGTC-BBCSSTTTTSBCCEEEEECTTSBEEEEEECSBTTSCCCCHHHHHHHHHC
T ss_pred             CCCeEEeecCccCcH-HHhCC-EecccccCCceeeEEEEEcCCCeEEEEEeCCCcCCCCCHHHHHHHHHhh
Confidence                       2235 66776 42         5887777 799999988642      468888888765

>2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens}

Probab=99.43  E-value=2.6e-12  Score=96.27  Aligned_cols=106  Identities=14%  Similarity=0.001  Sum_probs=80.5

Q ss_pred             eeccccceeEEecC-CCeeeeeC---ceEEEEEecCCChhhhhhhHHHHHHHHhcCC--cEEEEEECCC--------c--
Q 031271           54 LIYCINEMVLNIND-GGNVVFWV---LKVVIYYTAAWCGPCKFIEPYVKDFAAMYTD--VQFIKIDVDW--------L--  117 (162)
Q Consensus        54 ~~~~~~~~~~~~~~-~~~~~~~~---k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~--v~f~~vd~d~--------~--  117 (162)
                      .....|+|.+.+.+ |+.+..++   |+|||+||++||++| ...|.|.++.++|.+  +.++.|.+++        .  
T Consensus        13 ~~~~~pdF~l~d~~~G~~v~Ls~~kGKvvll~F~At~C~~c-~e~p~L~~l~~~~~~~g~~vlgvs~d~f~~~e~~~~~~   91 (207)
T 2r37_A           13 ISGTIYEYGALTIDGEEYIPFKQYAGKYVLFVNVASYGGLT-GQYIELNALQEELAPFGLVILGFPCNQFGKQEPGENSE   91 (207)
T ss_dssp             --CCGGGCEEEBTTSSCEEEGGGGTTSEEEEEEECSSSTTT-THHHHHHHHHHHHGGGTEEEEEEECCCBTTCCCSCHHH
T ss_pred             ccCccCCeEeeeCCCCCEEcHHHhCCCEEEEEEeCCCCCCh-HHHHHHHHHHHHhccCCEEEEEEECcccCcCCCCCHHH
Confidence            33457889999999 99887766   999999999999999 678999999998863  8899887541        1  


Q ss_pred             -HHHHH------hcCCCC--------------------------------C--------------c---cEEEEE-cCCe
Q 031271          118 -PEAAK------AFDLID--------------------------------V--------------L---PTFVLV-KRGK  140 (162)
Q Consensus       118 -~~l~~------~~~i~~--------------------------------~--------------~---Ptiv~~-~~Gk  140 (162)
                       .++++      +|++ .                                +              +   |+.+++ ++|+
T Consensus        92 i~~f~~~~~~~~~~~~-~fp~l~d~d~~g~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~p~~~~~i~~~~ttflID~~G~  170 (207)
T 2r37_A           92 ILPTLKYVRPGGGFVP-NFQLFEKGDVNGEKEQKFYTFLKNSCPPTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDGI  170 (207)
T ss_dssp             HHHHHHHTSSCTTCCC-SSEEBCCCCSSSTTCCHHHHHHHHHSCCSCSCCCCGGGBCCSSCCTTCCCSTTCEEEECTTSC
T ss_pred             HHHHHHhcchhhccCc-cceeeeEeccCCcccchHHHHHHhhCccccccccccccccccccccCcccccceEEEECCCCc
Confidence             23444      5544 1                                0              1   554555 8999


Q ss_pred             EEEEEcCC-CHHHHHHHHHHHh
Q 031271          141 EIDRVVGA-KKDELQMKTEKRR  161 (162)
Q Consensus       141 ~i~~~~g~-~~~~l~~~l~~~~  161 (162)
                      ++.++.|. +++.|++.|++++
T Consensus       171 i~~~~~g~~~~~~l~~~I~~ll  192 (207)
T 2r37_A          171 PIMRWHHRTTVSNVKMDILSYM  192 (207)
T ss_dssp             EEEEECTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCHHHHHHHHHHHH
Confidence            99999887 8888888887764

>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D

Probab=99.43  E-value=1.2e-12  Score=98.89  Aligned_cols=106  Identities=14%  Similarity=0.109  Sum_probs=83.6

Q ss_pred             eeeccccceeEEec-CC--CeeeeeC---ceEEEEEec-CCChhhhhhhHHHHHHHHhcC--CcEEEEEECCC-------
Q 031271           53 CLIYCINEMVLNIN-DG--GNVVFWV---LKVVIYYTA-AWCGPCKFIEPYVKDFAAMYT--DVQFIKIDVDW-------  116 (162)
Q Consensus        53 ~~~~~~~~~~~~~~-~~--~~~~~~~---k~vvv~F~a-~wC~~C~~~~~~l~~~~~~~~--~v~f~~vd~d~-------  116 (162)
                      ......|+|.+.+. ++  +.+..++   |+|||+||+ +||++|....|.|.++.++|.  ++.++.|++|.       
T Consensus        41 ~~G~~aP~f~l~~~~d~~G~~v~l~~~~Gk~vll~F~a~~wC~~C~~~~p~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~  120 (222)
T 3ztl_A           41 LPNRPAPEFKGQAVINGEFKEICLKDYRGKYVVLFFYPADFTFVCPTEIIAFSDQVEEFNSRNCQVIACSTDSQYSHLAW  120 (222)
T ss_dssp             CSSEECCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCSSCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHH
T ss_pred             cCCCCCCCeEEecccCCCCcEEeHHHhCCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHH
Confidence            34456788999865 44  7776655   899999996 999999999999999999984  49999998873       


Q ss_pred             ---------------------cHHHHHhcCCCC------CccEEEEE-cCCeEEEEEcCC-----CHHHHHHHHHH
Q 031271          117 ---------------------LPEAAKAFDLID------VLPTFVLV-KRGKEIDRVVGA-----KKDELQMKTEK  159 (162)
Q Consensus       117 ---------------------~~~l~~~~~i~~------~~Ptiv~~-~~Gk~i~~~~g~-----~~~~l~~~l~~  159 (162)
                                           ...+++.|++ .      .+|+++++ ++|+++.++.|.     ..+++++.|+.
T Consensus       121 ~~~~~~~~~~~~~~~~~l~D~~~~~~~~ygv-~~~~~g~~~P~~~lID~~G~I~~~~~g~~~~~~~~~~il~~l~~  195 (222)
T 3ztl_A          121 DNLDRKSGGLGHMKIPLLADRKQEISKAYGV-FDEEDGNAFRGLFIIDPNGILRQITINDKPVGRSVDETLRLLDA  195 (222)
T ss_dssp             HHSCGGGTSCCSCSSCEEECSSSHHHHHTTC-BCTTTSSBCEEEEEECTTSEEEEEEEECTTBCCCHHHHHHHHHH
T ss_pred             HHHhhhhccccccceeEEeCCchHHHHHcCC-eecCCCCccceEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHH
Confidence                                 2357788999 7      89988777 899999988765     25666666654

>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A

Probab=99.42  E-value=3.2e-13  Score=96.66  Aligned_cols=104  Identities=19%  Similarity=0.183  Sum_probs=75.1

Q ss_pred             ccccceeEEecCCCeeeeeC---ceEEEEEe-cCCChhhhhhhHHHHHHHHhcC--CcEEEEEECCC-------------
Q 031271           56 YCINEMVLNINDGGNVVFWV---LKVVIYYT-AAWCGPCKFIEPYVKDFAAMYT--DVQFIKIDVDW-------------  116 (162)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~---k~vvv~F~-a~wC~~C~~~~~~l~~~~~~~~--~v~f~~vd~d~-------------  116 (162)
                      ...|+|++.+.+|+.+..++   |+|+|+|| ++||++|....|.|.++.+++.  ++.++.|+.|.             
T Consensus         8 ~~aPdF~l~~~~G~~~~l~d~~Gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~~~~v~vs~d~~~~~~~~~~~~~~   87 (157)
T 4g2e_A            8 ELAPDFELPDTELKKVKLSALKGKVVVLAFYPAAFTQVCTKEMCTFRDSMAKFNQVNAVVLGISVDPPFSNKAFKEHNKL   87 (157)
T ss_dssp             SBCCCCEEEBTTSCEEEGGGGTTSCEEEEECSCTTCCC------CCSCGGGGGGGCSSEEEEEESSCHHHHHHHHHHTTC
T ss_pred             CCCcCeEeECCCCCEEeHHHHCCCeEEEEecCCCCCCccccchhhcccccccccccCceEeeecccchhHHHHHHHHcCC
Confidence            34688999999999998766   89999999 9999999999999988888775  48888888763             


Q ss_pred             --------cHHHHHhcCCCC-----------CccEEEEE-cCCeEEEEEcCC------CHHHHHHHHHHH
Q 031271          117 --------LPEAAKAFDLID-----------VLPTFVLV-KRGKEIDRVVGA------KKDELQMKTEKR  160 (162)
Q Consensus       117 --------~~~l~~~~~i~~-----------~~Ptiv~~-~~Gk~i~~~~g~------~~~~l~~~l~~~  160 (162)
                              ..++++.||+ .           ..|+++++ ++|++..+..+.      +.+++++.|+.+
T Consensus        88 ~~p~l~D~~~~v~~~ygv-~~~~~~~~~~~~~~p~tflID~~G~I~~~~~~~~~~~~~~~~eil~~l~~L  156 (157)
T 4g2e_A           88 NFTILSDYNREVVKKYNV-AWEFPALPGYVLAKRAVFVIDKEGKVRYKWVSDDPTKEPPYDEIEKVVKSL  156 (157)
T ss_dssp             CSEEEECTTSHHHHHTTC-EEECTTSTTCEEECEEEEEECTTSBEEEEEEESSTTCCCCHHHHHHHHHHT
T ss_pred             cEEEEEcCCcHHHHHcCC-ccccccCCCcceeeeeEEEECCCCEEEEEEECCCCCCCCCHHHHHHHHHHh
Confidence                    2356777876 3           35665555 899998776432      467888888754

>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10

Probab=99.42  E-value=2.2e-12  Score=91.91  Aligned_cols=93  Identities=15%  Similarity=0.053  Sum_probs=75.8

Q ss_pred             eccccceeEEecCCCeeeeeC---c--eEEEEEe-cCCChhhhhhhHHHHHHHHhcCC-cEEEEEECCC-----------
Q 031271           55 IYCINEMVLNINDGGNVVFWV---L--KVVIYYT-AAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDW-----------  116 (162)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~---k--~vvv~F~-a~wC~~C~~~~~~l~~~~~~~~~-v~f~~vd~d~-----------  116 (162)
                      ....|++.+.+.+|+.+..++   +  +|+|+|| ++||++|....|.|.++.++|.+ -.++.|..|.           
T Consensus        10 G~~~P~f~l~~~~G~~v~l~~~~gk~~~vvl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~   89 (159)
T 2a4v_A           10 GDPIPDLSLLNEDNDSISLKKITENNRVVVFFVYPRASTPGSTRQASGFRDNYQELKEYAAVFGLSADSVTSQKKFQSKQ   89 (159)
T ss_dssp             TCBCCSCEEECTTSCEEEHHHHHHHCSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTTTCEEEEEESCCHHHHHHHHHHH
T ss_pred             CCCCCCeEEECCCCCEEeHHHHhCCCCeEEEEEcCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeCCCHHHHHHHHHHh
Confidence            345788999999999887655   4  6889987 99999999999999999988853 2777777652           


Q ss_pred             ----------cHHHHHhcCCCCCcc-------EEEEEcCCeEEEEEcCCC
Q 031271          117 ----------LPEAAKAFDLIDVLP-------TFVLVKRGKEIDRVVGAK  149 (162)
Q Consensus       117 ----------~~~l~~~~~i~~~~P-------tiv~~~~Gk~i~~~~g~~  149 (162)
                                ...+++.||+ ...|       ++++ ++|+++.++.|..
T Consensus        90 ~~~~~~l~D~~~~~~~~~gv-~~~p~~g~~~~~~li-~~G~i~~~~~g~~  137 (159)
T 2a4v_A           90 NLPYHLLSDPKREFIGLLGA-KKTPLSGSIRSHFIF-VDGKLKFKRVKIS  137 (159)
T ss_dssp             TCSSEEEECTTCHHHHHHTC-BSSSSSCBCCEEEEE-ETTEEEEEEESCC
T ss_pred             CCCceEEECCccHHHHHhCC-cccccCCccceEEEE-cCCEEEEEEccCC
Confidence                      3367889999 8888       6777 9999999998873

>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A

Probab=99.41  E-value=2.3e-12  Score=93.27  Aligned_cols=105  Identities=14%  Similarity=0.123  Sum_probs=82.4

Q ss_pred             ccc-ceeEEecCCCeeeeeC---ceEEEEEecCCCh-hhhhhhHHHHHHHHhcC----CcEEEEEECCC--c--------
Q 031271           57 CIN-EMVLNINDGGNVVFWV---LKVVIYYTAAWCG-PCKFIEPYVKDFAAMYT----DVQFIKIDVDW--L--------  117 (162)
Q Consensus        57 ~~~-~~~~~~~~~~~~~~~~---k~vvv~F~a~wC~-~C~~~~~~l~~~~~~~~----~v~f~~vd~d~--~--------  117 (162)
                      ..| +|.+.+.+|+.+..++   |+++|+||++||+ .|....+.|.++.+++.    ++.++.|.+|.  .        
T Consensus         6 ~~P~~f~l~d~~G~~v~l~~~~Gk~vll~F~~t~C~~~C~~~~~~l~~~~~~~~~~~~~~~vv~is~d~~d~~~~~~~~~   85 (170)
T 3me7_A            6 YVPGDITLVDSYGNEFQLKNLKGKPIILSPIYTHCRAACPLITKSLLKVIPKLGTPGKDFWVITFTFDPKDTLEDIKRFQ   85 (170)
T ss_dssp             BCCTTCEEEETTCCEEEGGGGTTSCEEEEEECTTCCSHHHHHHHHHHTTHHHHCCBTTTBEEEEEECCTTCCHHHHHHHH
T ss_pred             cCCCCeEEEcCCcCEEchHHhCCCEEEEEEECCCCCchhHHHHHHHHHHHHHhhhcCCceEEEEEECCCCCCHHHHHHHH
Confidence            468 8999999999987654   9999999999997 69999999999998883    48888887651  0        


Q ss_pred             ---------------------HHHHHhcCC--------CCCccEEEEE-cCCeEEEEEcCC--CHHHHHHHHHHHh
Q 031271          118 ---------------------PEAAKAFDL--------IDVLPTFVLV-KRGKEIDRVVGA--KKDELQMKTEKRR  161 (162)
Q Consensus       118 ---------------------~~l~~~~~i--------~~~~Ptiv~~-~~Gk~i~~~~g~--~~~~l~~~l~~~~  161 (162)
                                           ..+++.||+        ....|+++++ ++|+++.++.|.  +++++++.|+++.
T Consensus        86 ~~~~~~~~~w~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~lID~~G~i~~~~~g~~~~~~~i~~~l~~~~  161 (170)
T 3me7_A           86 KEYGIDGKGWKVVKAKTSEDLFKLLDAIDFRFMTAGNDFIHPNVVVVLSPELQIKDYIYGVNYNYLEFVNALRLAR  161 (170)
T ss_dssp             HHTTCCSSSEEEEEESSHHHHHHHHHHTTCCCEEETTEEECCCEEEEECTTSBEEEEEESSSCCHHHHHHHHHHHT
T ss_pred             HHcCCCCCCeEEEeCCCHHHHHHHHHHCCeEEecCCCccccCceEEEECCCCeEEEEEeCCCCCHHHHHHHHHHhh
Confidence                                 135555553        0345666666 899999888886  7999999998764

>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}

Probab=99.41  E-value=1.8e-13  Score=87.20  Aligned_cols=70  Identities=19%  Similarity=0.273  Sum_probs=54.0

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcC-CcEEEEEECC-CcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC--CHHHH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYT-DVQFIKIDVD-WLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA--KKDEL  153 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~-~v~f~~vd~d-~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~--~~~~l  153 (162)
                      ++.||++||++|+++.+.++++.+++. .+.++.+|.+ +.++++++||+ ..+|++++  +|+.+.  .|.  +.++|
T Consensus         4 ~~~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~gv-~~vPt~~i--~g~~~~--~G~~~~~~~l   77 (80)
T 2k8s_A            4 KAIFYHAGCPVCVSAEQAVANAIDPSKYTVEIVHLGTDKARIAEAEKAGV-KSVPALVI--DGAAFH--INFGAGIDDL   77 (80)
T ss_dssp             EEEEEECSCHHHHHHHHHHHHHSCTTTEEEEEEETTTCSSTHHHHHHHTC-CEEEEEEE--TTEEEE--EEEEEEHHHH
T ss_pred             eEEEeCCCCCchHHHHHHHHHHHHhcCCeEEEEEecCChhhHHHHHHcCC-CcCCEEEE--CCEEEE--eccCcCHHHh
Confidence            678999999999999999999887763 2555555554 57889999999 99999877  888654  233  45554

>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10

Probab=99.39  E-value=2.5e-12  Score=92.39  Aligned_cols=94  Identities=13%  Similarity=0.113  Sum_probs=76.8

Q ss_pred             eeeccccceeEEecCCCeeeeeC---ceEEEEEe-cCCChhhhhhhHHHHHHHHhcCCcEEEEEECCC------------
Q 031271           53 CLIYCINEMVLNINDGGNVVFWV---LKVVIYYT-AAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDW------------  116 (162)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~---k~vvv~F~-a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~------------  116 (162)
                      ......|++.+.+.+|+.+..++   |+++|+|| ++||++|....|.|.++.++|.++.++.|+.|.            
T Consensus        18 ~~G~~~P~f~l~~~~G~~v~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~   97 (165)
T 1q98_A           18 QVGEIVENFILVGNDLADVALNDFASKRKVLNIFPSIDTGVCATSVRKFNQQAAKLSNTIVLCISADLPFAQARFCGAEG   97 (165)
T ss_dssp             CTTCBCCCCEEECTTSCEEEGGGGTTSEEEEEECSCSCSSCCCHHHHHHHHHHHHSTTEEEEEEESSCHHHHTTCTTTTT
T ss_pred             CCCCCCCCeEEECCCCCEEehHHhCCCeEEEEEECCCCCCccHHHHHHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHcC
Confidence            33445788999999999887765   89999999 899999999999999999988668888887751            


Q ss_pred             -----------cHHHHHhcCCCCC---------ccEEEEE-cCCeEEEEEcC
Q 031271          117 -----------LPEAAKAFDLIDV---------LPTFVLV-KRGKEIDRVVG  147 (162)
Q Consensus       117 -----------~~~l~~~~~i~~~---------~Ptiv~~-~~Gk~i~~~~g  147 (162)
                                 ...+++.|++ ..         .|+++++ ++|+++.++.|
T Consensus        98 ~~~~~~l~D~~~~~~~~~~gv-~~~~~~~~g~~~p~~~liD~~G~i~~~~~~  148 (165)
T 1q98_A           98 IENAKTVSTFRNHALHSQLGV-DIQTGPLAGLTSRAVIVLDEQNNVLHSQLV  148 (165)
T ss_dssp             CTTEEEEECTTCTHHHHHTTC-EECSSTTTTSBCCEEEEECTTSBEEEEEEC
T ss_pred             CCceEEeeccccchHHHHhCc-eecccccCCccceeEEEEcCCCEEEEEEeC
Confidence                       3457788887 53         4987777 79999999875

>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}

Probab=99.39  E-value=1.6e-12  Score=94.85  Aligned_cols=103  Identities=11%  Similarity=0.041  Sum_probs=81.3

Q ss_pred             ccceeEEecCCCeeeeeC---ceEEEEEe-cCCChhhhhhhHHHHHHHHhcCC--cEEEEEECCC---------------
Q 031271           58 INEMVLNINDGGNVVFWV---LKVVIYYT-AAWCGPCKFIEPYVKDFAAMYTD--VQFIKIDVDW---------------  116 (162)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~---k~vvv~F~-a~wC~~C~~~~~~l~~~~~~~~~--v~f~~vd~d~---------------  116 (162)
                      .|+|.+.+.+|+.+..++   |+++|+|| ++||++|....|.|.++.++|.+  +.++.|..|.               
T Consensus        31 aP~f~l~~~~G~~v~l~d~~Gk~vvl~f~~~~~c~~C~~el~~l~~l~~~~~~~~~~vv~Vs~D~~~~~~~~~~~~~~~f  110 (179)
T 3ixr_A           31 LLNHPLMLSGSTCKTLSDYTNQWLVLYFYPKDNTPGSSTEGLEFNLLLPQFEQINATVLGVSRDSVKSHDSFCAKQGFTF  110 (179)
T ss_dssp             HHHCCEEEGGGEEECGGGGTTSEEEEEECSCTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESCCHHHHHHHHHHHTCCS
T ss_pred             CCCeeEECCCCCEEeHHHHCCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCce
Confidence            688999999999887765   88999998 99999999999999999998853  8888888763               


Q ss_pred             ------cHHHHHhcCCCCC------------ccEEEEE-cCCeEEEEEcCC----CHHHHHHHHHHHh
Q 031271          117 ------LPEAAKAFDLIDV------------LPTFVLV-KRGKEIDRVVGA----KKDELQMKTEKRR  161 (162)
Q Consensus       117 ------~~~l~~~~~i~~~------------~Ptiv~~-~~Gk~i~~~~g~----~~~~l~~~l~~~~  161 (162)
                            ...+++.|++ ..            .|+++++ ++|+++..+.+.    ..+++.+.|+++.
T Consensus       111 ~~l~D~~~~~~~~~gv-~~~~~~~g~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~il~~l~~l~  177 (179)
T 3ixr_A          111 PLVSDSDAILCKAFDV-IKEKTMYGRQVIGIERSTFLIGPTHRIVEAWRQVKVPGHAEEVLNKLKAHA  177 (179)
T ss_dssp             CEEECTTCHHHHHTTC-EEEECCC--CEEEECCEEEEECTTSBEEEEECSCCSTTHHHHHHHHHHHHH
T ss_pred             EEEECCchHHHHHcCC-cccccccCcccCCcceEEEEECCCCEEEEEEcCCCCCCCHHHHHHHHHHHh
Confidence                  2357778887 53            5777766 899999888664    2466777776653

>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0

Probab=99.38  E-value=3e-12  Score=92.04  Aligned_cols=105  Identities=11%  Similarity=0.019  Sum_probs=83.2

Q ss_pred             eeeccccceeEEecCCCeeeeeC---ceEEEEEe-cCCChhhhhhhHHHHHHHHhcCCcEEEEEECCC------------
Q 031271           53 CLIYCINEMVLNINDGGNVVFWV---LKVVIYYT-AAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDW------------  116 (162)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~---k~vvv~F~-a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~------------  116 (162)
                      ......|+|.+.+.+|+.+..++   |+++|+|| +.||++|....|.|.++.++ .++.++.|..|.            
T Consensus        21 ~~G~~aP~f~l~~~~G~~~~l~~~~Gk~vvl~f~~~~~c~~C~~~~~~l~~~~~~-~~~~vv~is~d~~~~~~~~~~~~~   99 (166)
T 3p7x_A           21 NEGDFAPDFTVLDNDLNQVTLADYAGKKKLISVVPSIDTGVCDQQTRKFNSDASK-EEGIVLTISADLPFAQKRWCASAG   99 (166)
T ss_dssp             CTTSBCCCCEEECTTSCEEEGGGGTTSCEEEEECSCTTSHHHHHHHHHHHHHSCT-TTSEEEEEESSCHHHHHHHHHHHT
T ss_pred             CCCCCCCCeEEEcCCCCEEeHHHhCCCcEEEEEECCCCCCccHHHHHHHHHHhhc-CCCEEEEEECCCHHHHHHHHHHcC
Confidence            34456789999999999987765   89999999 78999999999999999877 778888887752            


Q ss_pred             -----------cHHHHHhcCCCCC------ccEEEEE-cCCeEEEEEcCC------CHHHHHHHHHH
Q 031271          117 -----------LPEAAKAFDLIDV------LPTFVLV-KRGKEIDRVVGA------KKDELQMKTEK  159 (162)
Q Consensus       117 -----------~~~l~~~~~i~~~------~Ptiv~~-~~Gk~i~~~~g~------~~~~l~~~l~~  159 (162)
                                 ...+++.|++ ..      .|+++++ ++|+++.++.+.      +.+++.+.|++
T Consensus       100 ~~~~~~l~D~~~~~~~~~~gv-~~~~~g~~~p~~~liD~~G~i~~~~~~~~~~~~~~~~~il~~l~~  165 (166)
T 3p7x_A          100 LDNVITLSDHRDLSFGENYGV-VMEELRLLARAVFVLDADNKVVYKEIVSEGTDFPDFDAALAAYKN  165 (166)
T ss_dssp             CSSCEEEECTTTCHHHHHHTC-EETTTTEECCEEEEECTTCBEEEEEECSBTTSCCCHHHHHHHHHT
T ss_pred             CCceEEccCCchhHHHHHhCC-ccccCCceeeEEEEECCCCeEEEEEEcCCcccCCCHHHHHHHHhc
Confidence                       3367778888 64      8987777 799999886432      45777777764

>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP}

Probab=99.38  E-value=1.9e-13  Score=107.41  Aligned_cols=71  Identities=14%  Similarity=0.323  Sum_probs=58.3

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEE---C-CCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKID---V-DWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDEL  153 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd---~-d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l  153 (162)
                      +++||++||++|+++.|.+++++++++   ++.+|   . +++++++++|+| +++||+++  ||+.   +.|. +.++|
T Consensus       201 vV~F~A~WC~~Ck~l~p~le~lA~~l~---~Vd~d~~d~~~~~~~la~~~gI-~~vPT~~i--~G~~---~~G~~~~~~L  271 (291)
T 3kp9_A          201 GTMYGAYWCPHCQDQKELFGAAFDQVP---YVECSPNGPGTPQAQECTEAGI-TSYPTWII--NGRT---YTGVRSLEAL  271 (291)
T ss_dssp             CEEEECTTCHHHHHHHHHHGGGGGGSC---EEESCSSCSSSCCCHHHHTTTC-CSTTEEEE--TTEE---EESCCCHHHH
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHHHcC---EEEEeecCchhhHHHHHHHcCC-cccCeEEE--CCEE---ecCCCCHHHH
Confidence            789999999999999999999987764   44444   2 347899999999 99999655  8874   6787 89999


Q ss_pred             HHHHH
Q 031271          154 QMKTE  158 (162)
Q Consensus       154 ~~~l~  158 (162)
                      ++++.
T Consensus       272 ~~~l~  276 (291)
T 3kp9_A          272 AVASG  276 (291)
T ss_dssp             HHHTC
T ss_pred             HHHHC
Confidence            88864

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A

Probab=99.37  E-value=4.3e-12  Score=101.54  Aligned_cols=85  Identities=14%  Similarity=0.126  Sum_probs=73.5

Q ss_pred             ceEEEEEecCCChhhhhhhHHHHHHHHhcCC-cEEEEEECC--CcHHHHHhcCCCCC--ccEEEEEcCCeEEEEEc---C
Q 031271           76 LKVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVD--WLPEAAKAFDLIDV--LPTFVLVKRGKEIDRVV---G  147 (162)
Q Consensus        76 k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~-v~f~~vd~d--~~~~l~~~~~i~~~--~Ptiv~~~~Gk~i~~~~---g  147 (162)
                      ++++|+||++||++|+.+.|.|++++++|.+ +.|+.+|++  ..+.+++.||+ ..  +|+++++..|+...++.   |
T Consensus       136 ~~~~v~F~~~~~~~~~~~~~~~~~~A~~~~~~i~f~~vd~~~~~~~~~~~~fgi-~~~~~P~~~~~~~~~~~~ky~~~~~  214 (361)
T 3uem_A          136 KTHILLFLPKSVSDYDGKLSNFKTAAESFKGKILFIFIDSDHTDNQRILEFFGL-KKEECPAVRLITLEEEMTKYKPESE  214 (361)
T ss_dssp             CEEEEEECCSSSSSHHHHHHHHHHHHGGGTTTCEEEEECTTSGGGHHHHHHTTC-CTTTCSEEEEEECC--CCEECCSSC
T ss_pred             CcEEEEEEeCCchhHHHHHHHHHHHHHHccCceEEEEecCChHHHHHHHHHcCC-CccCCccEEEEEcCCcccccCCCcc
Confidence            4568999999999999999999999999986 999999999  68999999999 88  99999998765555554   4


Q ss_pred             C-CHHHHHHHHHHHh
Q 031271          148 A-KKDELQMKTEKRR  161 (162)
Q Consensus       148 ~-~~~~l~~~l~~~~  161 (162)
                      . +.+.|++|+++++
T Consensus       215 ~~~~~~l~~fi~~~l  229 (361)
T 3uem_A          215 ELTAERITEFCHRFL  229 (361)
T ss_dssp             CCCHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHh
Confidence            4 9999999999875

>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}

Probab=99.35  E-value=1.3e-11  Score=89.41  Aligned_cols=108  Identities=19%  Similarity=0.254  Sum_probs=79.0

Q ss_pred             eccccceeEEecCCCeeeeeC---ceEEEEEecCCCh-hhhhhhHHHHHHHHhcC----CcEEEEEECCC---cHH----
Q 031271           55 IYCINEMVLNINDGGNVVFWV---LKVVIYYTAAWCG-PCKFIEPYVKDFAAMYT----DVQFIKIDVDW---LPE----  119 (162)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~---k~vvv~F~a~wC~-~C~~~~~~l~~~~~~~~----~v~f~~vd~d~---~~~----  119 (162)
                      ....|+|++.+.+|+.+..++   |+|+|+||.+||+ .|....+.+.++.+.++    ++.++.|.+|.   .++    
T Consensus         9 ~~~~PdF~L~d~~G~~v~l~d~~Gk~vll~F~~t~Cp~~Cp~~~~~l~~l~~~~~~~~~~v~~v~isvDp~~Dtp~~l~~   88 (170)
T 4hde_A            9 NWDLETFQFTNQDGKPFGTKDLKGKVWVADFMFTNCQTVCPPMTANMAKLQKMAKEEKLDVQFVSFSVDPDLDKPENLKA   88 (170)
T ss_dssp             CBCCCCCEEECTTSCEEEHHHHTTSCEEEEEECTTCSSSHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCCHHHHHH
T ss_pred             CCcCCCcEEECCCCCEEeHHHhCCCEEEEEEECCCCCCcccHHHHHHHHHHHhhhcccccceeEeeecCcccccHHHHHH
Confidence            446789999999999998765   9999999999997 79988888887776652    48888887762   122    


Q ss_pred             HHHhcCC--------------------------C---------CCccEEEEE-cCCeEEEEEcCC---CHHHHHHHHHHH
Q 031271          120 AAKAFDL--------------------------I---------DVLPTFVLV-KRGKEIDRVVGA---KKDELQMKTEKR  160 (162)
Q Consensus       120 l~~~~~i--------------------------~---------~~~Ptiv~~-~~Gk~i~~~~g~---~~~~l~~~l~~~  160 (162)
                      ++++|+.                          .         ...|+++++ ++|+++.++.|.   ..+++.+.|+++
T Consensus        89 y~~~~~~~~~~~~~ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~liD~~G~i~~~~~g~~~~~~~~l~~~ik~L  168 (170)
T 4hde_A           89 FIQKFTEDTSNWNLLTGYSLEDITKFSKDNFQSLVDKPENGQVIHGTSFYLIDQNGKVMKKYSGISNTPYEDIIRDMKRL  168 (170)
T ss_dssp             HHTTTCSCCTTEEEEBCSCHHHHHHHHHHHHCCCCBCCTTSCCBCCCEEEEECTTSCEEEEEESSSSCCHHHHHHHHHHH
T ss_pred             HHHHcCCCCCCceecCcccHHHHHHHHHhcccccccCCCCceEEeeeEEEEEcCCCeEEEEECCCCCCCHHHHHHHHHHH
Confidence            2233322                          0         123555555 899999988875   468888888877


Q ss_pred             hC
Q 031271          161 RN  162 (162)
Q Consensus       161 ~~  162 (162)
                      ++
T Consensus       169 le  170 (170)
T 4hde_A          169 AE  170 (170)
T ss_dssp             HC
T ss_pred             hC
Confidence            53

>3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A

Probab=99.34  E-value=9.1e-12  Score=92.63  Aligned_cols=96  Identities=13%  Similarity=0.074  Sum_probs=78.2

Q ss_pred             eeeeccccceeEEecCCCeeeeeC---ceEEEEEe-cCCChhhhhhhHHHHHHHHhcCCcEEEEEECCC-----------
Q 031271           52 FCLIYCINEMVLNINDGGNVVFWV---LKVVIYYT-AAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDW-----------  116 (162)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~---k~vvv~F~-a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~-----------  116 (162)
                      .......|+|.+.+.+|+.+..++   |+|+|+|| +.||++|....|.|.++.++|.++.++.|..|.           
T Consensus        52 l~~G~~aPdf~l~d~~G~~v~L~d~~Gk~vvl~F~~~~~c~~C~~e~~~l~~l~~~~~~v~vv~Is~D~~~~~~~~~~~~  131 (200)
T 3zrd_A           52 PQIGDKAKDFTLVAKDLSDVALSSFAGKRKVLNIFPSIDTGVCAASVRKFNQLAGELENTVVLCISSDLPFAQSRFCGAE  131 (200)
T ss_dssp             CCTTCBCCCCEEECTTSCEEEGGGGTTSEEEEEECSCCCCSCCCHHHHHHHHHHHTSTTEEEEEEESSCHHHHTTCTTTT
T ss_pred             CCCCCCCCCeEEECCCCCEEcHHHhCCCcEEEEEECCCCCchhHHHHHHHHHHHHHhCCCEEEEEECCCHHHHHHHHHHc
Confidence            334456788999999999987765   89999999 679999999999999999999778898887752           


Q ss_pred             ------------cHHHHHhcCCCC---------CccEEEEE-cCCeEEEEEcCC
Q 031271          117 ------------LPEAAKAFDLID---------VLPTFVLV-KRGKEIDRVVGA  148 (162)
Q Consensus       117 ------------~~~l~~~~~i~~---------~~Ptiv~~-~~Gk~i~~~~g~  148 (162)
                                  ...+++.||+ .         ..|+++++ ++|+++.+..+.
T Consensus       132 ~~~~f~~l~D~~~~~~~~~ygv-~~~~~~~~g~~~p~~~lID~~G~I~~~~~~~  184 (200)
T 3zrd_A          132 GLSNVITLSTLRGADFKQAYGV-AITEGPLAGLTARAVVVLDGQDNVIYSELVN  184 (200)
T ss_dssp             TCTTEEEEETTSCTHHHHHTTC-EECSSTTTTSBCCEEEEECTTSBEEEEEECS
T ss_pred             CCCCceEEecCchHHHHHHhCc-eeecccCCCccccEEEEECCCCeEEEEEecC
Confidence                        3467788887 5         26987777 899999887643

>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}

Probab=99.31  E-value=1.4e-11  Score=93.13  Aligned_cols=104  Identities=13%  Similarity=0.119  Sum_probs=81.0

Q ss_pred             ccccceeEEec--CC--Ceeee----eCceEEEEEe-cCCChhhhhhhHHHHHHHHhc--CCcEEEEEECCCc-------
Q 031271           56 YCINEMVLNIN--DG--GNVVF----WVLKVVIYYT-AAWCGPCKFIEPYVKDFAAMY--TDVQFIKIDVDWL-------  117 (162)
Q Consensus        56 ~~~~~~~~~~~--~~--~~~~~----~~k~vvv~F~-a~wC~~C~~~~~~l~~~~~~~--~~v~f~~vd~d~~-------  117 (162)
                      ...|+|.+.+.  +|  +.+..    ..|+|||+|| ++||++|....|.|.++.++|  .++.++.|..|..       
T Consensus        29 ~~aP~F~l~~~~~~G~~~~v~L~d~~~Gk~vvl~F~patwCp~C~~e~p~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~  108 (221)
T 2c0d_A           29 KKAYNFTAQGLNKNNEIINVDLSSFIGQKYCCLLFYPLNYTFVCPTEIIEFNKHIKDFENKNVELLGISVDSVYSHLAWK  108 (221)
T ss_dssp             SBCCCCEEEEECTTSCEEEEEGGGGTTTCEEEEEECCCCTTTCCHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHH
T ss_pred             CCCCCeEEeccccCCCccEEeHHHHcCCCeEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHH
Confidence            34688999988  88  66654    3479999999 999999999999999998888  4688888887632       


Q ss_pred             ---------------------HHHHHhcCCCC-----CccEEEEE-cCCeEEEEEcCC-----CHHHHHHHHHHH
Q 031271          118 ---------------------PEAAKAFDLID-----VLPTFVLV-KRGKEIDRVVGA-----KKDELQMKTEKR  160 (162)
Q Consensus       118 ---------------------~~l~~~~~i~~-----~~Ptiv~~-~~Gk~i~~~~g~-----~~~~l~~~l~~~  160 (162)
                                           ..+++.|++ .     .+|+++++ ++|+++.+..|.     +.+++.+.|+++
T Consensus       109 ~~~~~~~g~~~~~fp~l~D~~~~~~~~ygv-~~~~g~~~P~~~lID~~G~I~~~~~g~~~~~~~~~ell~~l~~L  182 (221)
T 2c0d_A          109 NMPIEKGGIGNVEFTLVSDINKDISKNYNV-LYDNSFALRGLFIIDKNGCVRHQTVNDLPIGRNVQEVLRTIDSI  182 (221)
T ss_dssp             HSCGGGTCCCSCSSEEEECTTSHHHHHTTC-EETTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHH
T ss_pred             HHhhhhcCccCCceEEEECCchHHHHHcCC-cccCCCccceEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHH
Confidence                                 135566666 4     57987777 799999987652     578888888765

>4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A

Probab=99.31  E-value=1.5e-12  Score=94.03  Aligned_cols=105  Identities=19%  Similarity=0.164  Sum_probs=80.0

Q ss_pred             ccccceeEEecCCCeeeee-----CceEEEEEe-cCCChhhhhhhHHHHHHHHhcC--CcEEEEEECCC-----------
Q 031271           56 YCINEMVLNINDGGNVVFW-----VLKVVIYYT-AAWCGPCKFIEPYVKDFAAMYT--DVQFIKIDVDW-----------  116 (162)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~-----~k~vvv~F~-a~wC~~C~~~~~~l~~~~~~~~--~v~f~~vd~d~-----------  116 (162)
                      ...|+|.+.+.+|+.+..+     .|+++|+|| ++||++|....|.|.++.++|.  ++.++.|+.|.           
T Consensus         9 ~~aPdF~l~~~~G~~v~Lsd~~~~Gk~vvl~f~~~~~cp~C~~e~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~   88 (164)
T 4gqc_A            9 EKAPDFTLPNQDFEPVNLYEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKANAEVLAISVDSPWCLKKFKDEN   88 (164)
T ss_dssp             SBCCCCEEEBTTSCEEEHHHHHHTSSCEEEEECSCTTCCEECSSCEESCCCGGGGGGSSSEEEEEESSCHHHHHHHHHHT
T ss_pred             CCCcCcEeECCCCCEEEHHHHhcCCCEEEEEEeCCCCCCCcccchhhhhhhHHHhhccCceEEEecCCCHHHHHHHHHhc
Confidence            3568899999999988764     378889888 9999999999999988888775  48888888763           


Q ss_pred             ----------cHHHHHhcCCCC----------CccEEEEE-cCCeEEEEEcCC------CHHHHHHHHHHHh
Q 031271          117 ----------LPEAAKAFDLID----------VLPTFVLV-KRGKEIDRVVGA------KKDELQMKTEKRR  161 (162)
Q Consensus       117 ----------~~~l~~~~~i~~----------~~Ptiv~~-~~Gk~i~~~~g~------~~~~l~~~l~~~~  161 (162)
                                ..++++.||+ .          ..|+++++ ++|++...+.+.      +.+++.+.|++..
T Consensus        89 ~~~fp~l~D~~~~v~~~ygv-~~~~~~~~~~~~~p~tflID~~G~I~~~~~~~~~~~~~~~~eil~~l~~l~  159 (164)
T 4gqc_A           89 RLAFNLLSDYNREVIKLYNV-YHEDLKGLKMVAKRAVFIVKPDGTVAYKWVTDNPLNEPDYDEVVREANKIA  159 (164)
T ss_dssp             TCCSEEEECTTSHHHHHTTC-EEEEETTEEEEECCEEEEECTTSBEEEEEECSCTTCCCCHHHHHHHHHHHH
T ss_pred             CcccceeecCchHHHHHcCC-cccccccCcCCeeeEEEEECCCCEEEEEEEeCCCCCCCCHHHHHHHHHHHh
Confidence                      2357778886 4          25665555 899998876542      4677777776653

>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}

Probab=99.30  E-value=1.4e-11  Score=89.05  Aligned_cols=80  Identities=18%  Similarity=0.243  Sum_probs=65.1

Q ss_pred             ceEEEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEEC-----------------------------------------
Q 031271           76 LKVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDV-----------------------------------------  114 (162)
Q Consensus        76 k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~-----------------------------------------  114 (162)
                      +++|+.||.+|||+|+.+.|.++++.++++++.+...++                                         
T Consensus        23 ~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~v~~~~~~~p~~~~~s~~aa~~~~~a~~~~~~~~~~~~lf~~~~~~~~~~  102 (175)
T 3gyk_A           23 DVTVVEFFDYNCPYCRRAMAEVQGLVDADPNVRLVYREWPILGEGSDFAARAALAARQQGKYEAFHWALMGMSGKANETG  102 (175)
T ss_dssp             SEEEEEEECTTCHHHHHHHHHHHHHHHHCTTEEEEEEECCCSCHHHHHHHHHHHHGGGGTCHHHHHHHHHTCSSCCSHHH
T ss_pred             CEEEEEEECCCCccHHHHHHHHHHHHHhCCCEEEEEEeCCCCCCChHHHHHHHHHHHHHhHHHHHHHHHHhcCCCCCHHH
Confidence            566999999999999999999999999998866666553                                         


Q ss_pred             ----------------------------CCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHHHHHHHh
Q 031271          115 ----------------------------DWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQMKTEKRR  161 (162)
Q Consensus       115 ----------------------------d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~~l~~~~  161 (162)
                                                  +.+..+++++|| .++||+++  +|+   .+.|. +.+.|++.|++.+
T Consensus       103 l~~~a~~~Gld~~~~~~~~~~~~~~~~v~~~~~~a~~~gv-~gtPt~~i--~g~---~~~G~~~~~~l~~~i~~~l  172 (175)
T 3gyk_A          103 VLRIAREVGLDTEQLQRDMEAPEVTAHIAQSMALAQKLGF-NGTPSFVV--EDA---LVPGFVEQSQLQDAVDRAR  172 (175)
T ss_dssp             HHHHHHHTTCCHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-CSSSEEEE--TTE---EECSCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHhChHHHHHHHHHHHHHHHcCC-ccCCEEEE--CCE---EeeCCCCHHHHHHHHHHHH
Confidence                                        223356788999 99999987  785   45687 8999999998764

>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A

Probab=99.29  E-value=1.5e-11  Score=90.21  Aligned_cols=103  Identities=16%  Similarity=0.021  Sum_probs=79.5

Q ss_pred             cccceeEEec-CC--CeeeeeC---ceEEEEEec-CCChhhhhhhHHHHHHHHhcC--CcEEEEEECCCc----------
Q 031271           57 CINEMVLNIN-DG--GNVVFWV---LKVVIYYTA-AWCGPCKFIEPYVKDFAAMYT--DVQFIKIDVDWL----------  117 (162)
Q Consensus        57 ~~~~~~~~~~-~~--~~~~~~~---k~vvv~F~a-~wC~~C~~~~~~l~~~~~~~~--~v~f~~vd~d~~----------  117 (162)
                      ..|+|.+.+. +|  +.+..++   |+|+|+||+ +||++|....|.|.++.++|.  ++.++.|..|..          
T Consensus         6 ~aP~f~l~~~~~G~~~~v~l~~~~Gk~vvl~F~~~~~Cp~C~~e~~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~   85 (186)
T 1n8j_A            6 KIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVSPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSS   85 (186)
T ss_dssp             BCCCCEEEEEETTEEEEEEHHHHTTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHHHC
T ss_pred             cCCCcEeecccCCcceEEEHHHHCCCeEEEEEECCCCCCccHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHc
Confidence            4678888888 58  6665543   899999995 999999999999999988875  588888887632          


Q ss_pred             ---------------HHHHHhcCCCC------CccEEEEE-cCCeEEEEEcCC-----CHHHHHHHHHHH
Q 031271          118 ---------------PEAAKAFDLID------VLPTFVLV-KRGKEIDRVVGA-----KKDELQMKTEKR  160 (162)
Q Consensus       118 ---------------~~l~~~~~i~~------~~Ptiv~~-~~Gk~i~~~~g~-----~~~~l~~~l~~~  160 (162)
                                     ..+++.||+ .      .+|+++++ ++|+++.++.|.     +.+++.+.|+++
T Consensus        86 ~~~~~~~fp~l~D~~~~~~~~ygv-~~~~~g~~~p~~~lID~~G~i~~~~~~~~~~~~~~~~l~~~l~~l  154 (186)
T 1n8j_A           86 ETIAKIKYAMIGDPTGALTRNFDN-MREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAA  154 (186)
T ss_dssp             TTGGGCCSEEEECTTSHHHHHTTC-EETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             CcccCCceeEEECCchHHHHHhCC-ccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHH
Confidence                           235666776 5      36987777 799999988763     478888888765

>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens}

Probab=99.27  E-value=2.7e-11  Score=90.78  Aligned_cols=103  Identities=10%  Similarity=0.033  Sum_probs=78.8

Q ss_pred             cccceeEEec---CCCeeeeeC---ceEEEEEe-cCCChhhhhhhHHHHHHHHhcC--CcEEEEEECCCc----------
Q 031271           57 CINEMVLNIN---DGGNVVFWV---LKVVIYYT-AAWCGPCKFIEPYVKDFAAMYT--DVQFIKIDVDWL----------  117 (162)
Q Consensus        57 ~~~~~~~~~~---~~~~~~~~~---k~vvv~F~-a~wC~~C~~~~~~l~~~~~~~~--~v~f~~vd~d~~----------  117 (162)
                      ..|+|.+.+.   +|+.+..++   |++||+|| ++||++|....|.|.++.++|.  ++.++.|.+|..          
T Consensus        24 ~aP~f~l~~~~~~~g~~v~l~d~~Gk~vvl~F~pat~C~~C~~e~~~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~  103 (211)
T 2pn8_A           24 PAPYWEGTAVIDGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSVDSQFTHLAWINTP  103 (211)
T ss_dssp             BCCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHTSC
T ss_pred             cCCCeEeecccCCCCcEEEHHHhCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHh
Confidence            4677888764   346665554   89999999 9999999999999999998884  588888887632          


Q ss_pred             ------------------HHHHHhcCCCC------CccEEEEE-cCCeEEEEEcCC-----CHHHHHHHHHHH
Q 031271          118 ------------------PEAAKAFDLID------VLPTFVLV-KRGKEIDRVVGA-----KKDELQMKTEKR  160 (162)
Q Consensus       118 ------------------~~l~~~~~i~~------~~Ptiv~~-~~Gk~i~~~~g~-----~~~~l~~~l~~~  160 (162)
                                        ..+++.|++ .      .+|+++++ ++|+++.+..|.     +.+++++.|+.+
T Consensus       104 ~~~~g~~~~~fp~l~D~~~~~~~~ygv-~~~~~g~~~p~~~lID~~G~I~~~~~g~~~~~~~~~ell~~l~~l  175 (211)
T 2pn8_A          104 RRQGGLGPIRIPLLSDLTHQISKDYGV-YLEDSGHTLRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAF  175 (211)
T ss_dssp             GGGTCCCSCSSCEEECTTSHHHHHTTC-EETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             hhccCccCCceEEEECCchHHHHHcCC-cccCCCcccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence                              145666776 4      48987777 799999887653     467788877764

>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1

Probab=99.24  E-value=6.3e-11  Score=73.74  Aligned_cols=69  Identities=16%  Similarity=0.298  Sum_probs=57.4

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHHHHH---hcCCCCCccEEEEEcCCeEEEEEcCCCHHHHHH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAK---AFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQM  155 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~l~~---~~~i~~~~Ptiv~~~~Gk~i~~~~g~~~~~l~~  155 (162)
                      ++.|+++||++|+++.+.|++.     ++.|..+|++.++++.+   ++++ ..+|++++  +|+.   +.|.++++|++
T Consensus         3 i~~y~~~~C~~C~~~~~~l~~~-----~i~~~~~di~~~~~~~~~~~~~~~-~~vP~l~~--~g~~---~~g~~~~~l~~   71 (75)
T 1r7h_A            3 ITLYTKPACVQCTATKKALDRA-----GLAYNTVDISLDDEARDYVMALGY-VQAPVVEV--DGEH---WSGFRPERIKQ   71 (75)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT-----TCCCEEEETTTCHHHHHHHHHTTC-BCCCEEEE--TTEE---EESCCHHHHHH
T ss_pred             EEEEeCCCChHHHHHHHHHHHc-----CCCcEEEECCCCHHHHHHHHHcCC-CccCEEEE--CCeE---EcCCCHHHHHH
Confidence            5779999999999999999874     57888899998876665   8999 99999874  7864   46889988888


Q ss_pred             HHH
Q 031271          156 KTE  158 (162)
Q Consensus       156 ~l~  158 (162)
                      +|+
T Consensus        72 ~l~   74 (75)
T 1r7h_A           72 LQA   74 (75)
T ss_dssp             HHC
T ss_pred             HHh
Confidence            774

>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A

Probab=99.23  E-value=2.2e-11  Score=91.57  Aligned_cols=80  Identities=15%  Similarity=0.262  Sum_probs=61.3

Q ss_pred             CceEEEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEEC----------------------------------------
Q 031271           75 VLKVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDV----------------------------------------  114 (162)
Q Consensus        75 ~k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~----------------------------------------  114 (162)
                      .+++|+.||++||++|+++.|.++++.+.  ++.+..+..                                        
T Consensus        86 ~k~~vv~F~d~~Cp~C~~~~~~l~~l~~~--~v~v~~~~~p~~~~~~~s~~~a~a~~~a~d~~~~~~~~~~~~~~~~~~~  163 (216)
T 1eej_A           86 EKHVITVFTDITCGYCHKLHEQMADYNAL--GITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMAGKSVAPASC  163 (216)
T ss_dssp             CCEEEEEEECTTCHHHHHHHTTHHHHHHT--TEEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHHTTCCCCCCCC
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHhC--CcEEEEEECCccCCCchHHHHHHHHHhccCHHHHHHHHHhCCCCChhHH
Confidence            36679999999999999999999998763  544443322                                        


Q ss_pred             ----CCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHHHHHHHh
Q 031271          115 ----DWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQMKTEKRR  161 (162)
Q Consensus       115 ----d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~~l~~~~  161 (162)
                          +.+..++++||| .++||+ ++.||+   ++.|. +++.|+++|++..
T Consensus       164 ~~~v~~~~~l~~~~gV-~gtPt~-v~~dG~---~~~G~~~~~~l~~~l~~~~  210 (216)
T 1eej_A          164 DVDIADHYALGVQLGV-SGTPAV-VLSNGT---LVPGYQPPKEMKEFLDEHQ  210 (216)
T ss_dssp             SCCHHHHHHHHHHHTC-CSSSEE-ECTTSC---EEESCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCC-CccCEE-EEcCCe---EecCCCCHHHHHHHHHHhh
Confidence                233568889999 999998 457885   44687 8899999888653

>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1

Probab=99.23  E-value=1.6e-11  Score=77.81  Aligned_cols=72  Identities=24%  Similarity=0.345  Sum_probs=57.5

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHHHHH---hcCCCCCccEEEEEcCCeEEEEEcCCCHHHHHH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAK---AFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQM  155 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~l~~---~~~i~~~~Ptiv~~~~Gk~i~~~~g~~~~~l~~  155 (162)
                      ++.|+++||++|+++.+.|++.     ++.|..+|++.++++.+   ++++ ..+|+++  .+|+.   +.|+++++|++
T Consensus         3 v~~f~~~~C~~C~~~~~~l~~~-----~i~~~~vdi~~~~~~~~~~~~~g~-~~vP~~~--~~g~~---~~g~~~~~l~~   71 (81)
T 1h75_A            3 ITIYTRNDCVQCHATKRAMENR-----GFDFEMINVDRVPEAAEALRAQGF-RQLPVVI--AGDLS---WSGFRPDMINR   71 (81)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT-----TCCCEEEETTTCHHHHHHHHHTTC-CSSCEEE--ETTEE---EESCCHHHHGG
T ss_pred             EEEEcCCCChhHHHHHHHHHHC-----CCCeEEEECCCCHHHHHHHHHhCC-CccCEEE--ECCEE---EecCCHHHHHH
Confidence            6779999999999999998873     57888999998876554   5899 9999984  47865   45788888888


Q ss_pred             HHHHHh
Q 031271          156 KTEKRR  161 (162)
Q Consensus       156 ~l~~~~  161 (162)
                      +|+++.
T Consensus        72 ~l~~~~   77 (81)
T 1h75_A           72 LHPAPH   77 (81)
T ss_dssp             GSCCC-
T ss_pred             HHhccc
Confidence            876553

>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A

Probab=99.23  E-value=5.8e-11  Score=91.43  Aligned_cols=103  Identities=17%  Similarity=0.092  Sum_probs=81.3

Q ss_pred             ccccceeEEecCCCeeee------eCce-EEEEEecCCChhhhhhhHHHHHHHHhcC--CcEEEEEECCC----------
Q 031271           56 YCINEMVLNINDGGNVVF------WVLK-VVIYYTAAWCGPCKFIEPYVKDFAAMYT--DVQFIKIDVDW----------  116 (162)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~------~~k~-vvv~F~a~wC~~C~~~~~~l~~~~~~~~--~v~f~~vd~d~----------  116 (162)
                      ...|+|.+.+.+| .+..      .+|. ||++||++||++|....+.|.++.++|.  ++.++.|++|.          
T Consensus         9 ~~aPdF~l~~~~G-~v~l~~d~l~~GK~vVL~~fpa~~CpvC~tEl~~l~~l~~ef~~~gv~VI~VS~Ds~~~~~~w~~~   87 (249)
T 3a2v_A            9 ERFPEMEVTTDHG-VIKLPDHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHIKWKEW   87 (249)
T ss_dssp             SBCCCEEEEETTE-EEEETHHHHTTTCEEEEECCSCTTCHHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHHH
T ss_pred             CCCCCeEEEcCCC-CEecHHHHhhCCCEEEEEEEcCCCCcChHHHHHHHHHHHHHHHhCCcEEEEEECCCHHHHHHHHHH
Confidence            3467888888888 5655      4564 4567899999999999999999998885  59999998864          


Q ss_pred             -----------------cHHHHHhcCCCC-------CccEEEEE-cCCeEEEEEcCC-----CHHHHHHHHHHH
Q 031271          117 -----------------LPEAAKAFDLID-------VLPTFVLV-KRGKEIDRVVGA-----KKDELQMKTEKR  160 (162)
Q Consensus       117 -----------------~~~l~~~~~i~~-------~~Ptiv~~-~~Gk~i~~~~g~-----~~~~l~~~l~~~  160 (162)
                                       ...+++.||+ .       .+|+++++ ++|++.....+.     +.+++...|+.+
T Consensus        88 ~~~~~~~~i~fPil~D~~~~ia~~ygv-~~~~~g~~~~p~~fIID~dG~I~~~~~~~~~~gr~~~Ellr~I~al  160 (249)
T 3a2v_A           88 IERHIGVRIPFPIIADPQGTVARRLGL-LHAESATHTVRGVFIVDARGVIRTMLYYPMELGRLVDEILRIVKAL  160 (249)
T ss_dssp             HHHHTCCCCCSCEEECTTSHHHHHHTC-CCTTCSSSCCEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             HHHhcCCCCceeEEECCchHHHHHhCC-ccccCCCcccceEEEECCCCeEEEEEecCCcccchhHHHHHHHHHH
Confidence                             2357888998 6       89987776 799998887653     578888888764

>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina}

Probab=99.21  E-value=9e-11  Score=84.91  Aligned_cols=92  Identities=15%  Similarity=0.037  Sum_probs=71.3

Q ss_pred             ccccceeEE-ecCCCeeeee----CceEEEEEe-cCCChhhhh-hhHHHHHHHHhcC--Cc-EEEEEECCC---------
Q 031271           56 YCINEMVLN-INDGGNVVFW----VLKVVIYYT-AAWCGPCKF-IEPYVKDFAAMYT--DV-QFIKIDVDW---------  116 (162)
Q Consensus        56 ~~~~~~~~~-~~~~~~~~~~----~k~vvv~F~-a~wC~~C~~-~~~~l~~~~~~~~--~v-~f~~vd~d~---------  116 (162)
                      ...|+|.+. +.+|+.+..+    .|+|+|+|| ++||++|.. ..|.|.++.++|.  ++ .++.|+.|.         
T Consensus         7 ~~aP~f~l~~~~~G~~v~L~d~~~Gk~vvl~f~~a~wcp~C~~~e~p~l~~~~~~~~~~gv~~vv~Is~d~~~~~~~~~~   86 (167)
T 2wfc_A            7 DKLPAVTVFGATPNDKVNMAELFAGKKGVLFAVPGAFTPGSSKTHLPGYVEQAAAIHGKGVDIIACMAVNDSFVMDAWGK   86 (167)
T ss_dssp             CBCCCCEEESSSTTCEEEHHHHTTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHHTTCCEEEEEESSCHHHHHHHHH
T ss_pred             CcCCCcEeecCCCCcEEeHHHHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHH
Confidence            356889999 9999987643    478888886 999999999 9999999888773  58 999998763         


Q ss_pred             --------------cHHHHHhcCCCCCc-----------cEEEEEcCCeEEEEEcCC
Q 031271          117 --------------LPEAAKAFDLIDVL-----------PTFVLVKRGKEIDRVVGA  148 (162)
Q Consensus       117 --------------~~~l~~~~~i~~~~-----------Ptiv~~~~Gk~i~~~~g~  148 (162)
                                    ..++++.||+ ...           |+.+++++|+++....+.
T Consensus        87 ~~~~~~~fp~l~D~~~~~~~~~gv-~~~~~~~~g~~~~~p~t~lI~~G~I~~~~~~~  142 (167)
T 2wfc_A           87 AHGADDKVQMLADPGGAFTKAVDM-ELDLSAVLGNVRSKRYSLVIEDGVVTKVNVEP  142 (167)
T ss_dssp             HTTCTTTSEEEECTTSHHHHHTTC-EECCHHHHSSCEECCEEEEEETTEEEEEEECT
T ss_pred             hcCCCcceEEEECCCCcHHHHcCC-ccccccccCcccceEEEEEEeCCEEEEEEecC
Confidence                          2356777887 543           864444999999888765

>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10

Probab=99.19  E-value=8.1e-11  Score=89.44  Aligned_cols=92  Identities=14%  Similarity=0.198  Sum_probs=70.6

Q ss_pred             ccccceeEEec-CCC--eeeee----CceEEEEEe-cCCChhhh-hhhHHHHHHHHhcC--Cc-EEEEEECCC-------
Q 031271           56 YCINEMVLNIN-DGG--NVVFW----VLKVVIYYT-AAWCGPCK-FIEPYVKDFAAMYT--DV-QFIKIDVDW-------  116 (162)
Q Consensus        56 ~~~~~~~~~~~-~~~--~~~~~----~k~vvv~F~-a~wC~~C~-~~~~~l~~~~~~~~--~v-~f~~vd~d~-------  116 (162)
                      ...|++.+.+. +|+  .+..+    .|+|+|+|| ++||++|. ...|.|.++.++|.  ++ .++.|+.|.       
T Consensus         7 ~~aP~f~l~~~~~g~~~~v~l~~~~~gk~vvl~f~~a~~cp~C~~~e~~~l~~~~~~~~~~~~~~vv~is~d~~~~~~~~   86 (241)
T 1nm3_A            7 KKVPQVTFRTRQGDKWVDVTTSELFDNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKKYGVDDILVVSVNDTFVMNAW   86 (241)
T ss_dssp             SBCCCCEEEEEETTEEEEEEHHHHHTTSEEEEEEESCSSCHHHHHTHHHHHHHHHHHHHHTTCCEEEEEESSCHHHHHHH
T ss_pred             CCCCCeEEEcccCCCceeecHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEcCCHHHHHHH
Confidence            34678888885 665  56443    488999999 99999999 99999999988874  58 899998863       


Q ss_pred             ---------------cHHHHHhcCCCC-----------CccEEEEEcCCeEEEEEcCC
Q 031271          117 ---------------LPEAAKAFDLID-----------VLPTFVLVKRGKEIDRVVGA  148 (162)
Q Consensus       117 ---------------~~~l~~~~~i~~-----------~~Ptiv~~~~Gk~i~~~~g~  148 (162)
                                     ...+++.||+ .           ..|+.+++++|++...+.|.
T Consensus        87 ~~~~~~~~~~~l~D~~~~~~~~~gv-~~~~~~~g~~~~~~p~t~li~~G~i~~~~~~~  143 (241)
T 1nm3_A           87 KEDEKSENISFIPDGNGEFTEGMGM-LVGKEDLGFGKRSWRYSMLVKNGVVEKMFIEP  143 (241)
T ss_dssp             HHHTTCTTSEEEECTTSHHHHHTTC-EEECTTTTCCEEECCEEEEEETTEEEEEEECC
T ss_pred             HHhcCCCceEEEECCCcHHHHHhCc-eeecccccCcccceeEEEEEECCEEEEEEEec
Confidence                           2357778887 5           34764444999999988775

>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea}

Probab=99.18  E-value=2.1e-10  Score=87.62  Aligned_cols=106  Identities=9%  Similarity=0.055  Sum_probs=80.8

Q ss_pred             eeccccceeEEec-C--CCeeeeeC---ceEEEEEec-CCChhhhhhhHHHHHHHHhcC--CcEEEEEECCCc-------
Q 031271           54 LIYCINEMVLNIN-D--GGNVVFWV---LKVVIYYTA-AWCGPCKFIEPYVKDFAAMYT--DVQFIKIDVDWL-------  117 (162)
Q Consensus        54 ~~~~~~~~~~~~~-~--~~~~~~~~---k~vvv~F~a-~wC~~C~~~~~~l~~~~~~~~--~v~f~~vd~d~~-------  117 (162)
                      .....|+|.+.+. +  |+.+..++   |+++|+||+ +||++|....|.|.++.++|.  ++.++.|..|..       
T Consensus        50 vG~~aPdF~l~~~~d~~G~~vsLsd~~Gk~vvL~F~~~~~cp~C~~el~~l~~l~~~~~~~gv~vv~Is~D~~~~~~~~~  129 (240)
T 3qpm_A           50 ISKPAPQWEGTAVINGEFKELKLSDYRGKYLVFFFYPLDFTFVCPTEIIAFSDRVHEFRAINTEVVACSVDSQFTHLAWI  129 (240)
T ss_dssp             TTSBCCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHH
T ss_pred             CCCCCCCcEeeeeeCCCCcEEEHHHhCCCEEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHH
Confidence            3445788887743 4  45776654   899999999 999999999999999999885  488888887631       


Q ss_pred             ---------------------HHHHHhcCCCC------CccEEEEE-cCCeEEEEEcCC-----CHHHHHHHHHHH
Q 031271          118 ---------------------PEAAKAFDLID------VLPTFVLV-KRGKEIDRVVGA-----KKDELQMKTEKR  160 (162)
Q Consensus       118 ---------------------~~l~~~~~i~~------~~Ptiv~~-~~Gk~i~~~~g~-----~~~~l~~~l~~~  160 (162)
                                           ..+++.||+ .      .+|+++++ ++|+++.+..+.     +.+++.+.|+..
T Consensus       130 ~~~~~~~~~~~~~fp~l~D~~~~v~~~ygv-~~~~~g~~~p~~flID~~G~I~~~~~~~~~~~~~~~eil~~l~~l  204 (240)
T 3qpm_A          130 ITPRKQGGLGPMKIPLLSDLTHQISKDYGV-YLEDQGHTLRGLFIIDEKGVLRQITMNDLPVGRSVDETLRLVQAF  204 (240)
T ss_dssp             HSCGGGTCCCSCSSCEEECTTSHHHHHTTC-EETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             HHHHhhcCCCCCceeEEeCchHHHHHHhCC-ccccCCCccceEEEEcCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence                                 257778888 6      58987777 799998886642     467777777653

>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10

Probab=99.18  E-value=1.4e-10  Score=83.11  Aligned_cols=91  Identities=18%  Similarity=0.121  Sum_probs=70.0

Q ss_pred             cccceeEE--ecCC--Ceeeee----CceEEEEEe-cCCChhhh-hhhHHHHHHHHhcC--CcE-EEEEECCC-------
Q 031271           57 CINEMVLN--INDG--GNVVFW----VLKVVIYYT-AAWCGPCK-FIEPYVKDFAAMYT--DVQ-FIKIDVDW-------  116 (162)
Q Consensus        57 ~~~~~~~~--~~~~--~~~~~~----~k~vvv~F~-a~wC~~C~-~~~~~l~~~~~~~~--~v~-f~~vd~d~-------  116 (162)
                      ..|++.+.  +.+|  +.+..+    .|+++|+|| ++||++|. ...|.|.++.++|.  ++. ++.|..|.       
T Consensus         9 ~aP~f~l~~~~~~G~~~~~~l~~~~~gk~vvl~f~~~~~c~~C~~~e~~~l~~~~~~~~~~~v~~vv~Is~d~~~~~~~~   88 (162)
T 1tp9_A            9 VLPDGKLAYFDEQDQLQEVSVHSLVAGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKSKGVTEILCISVNDPFVMKAW   88 (162)
T ss_dssp             BCCCCEEEEECTTSCEEEEESHHHHTTSEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTTCCCEEEEESSCHHHHHHH
T ss_pred             CCCCeEEEeecCCCCceeEeHHHHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHH
Confidence            46778775  7788  766543    388999999 89999999 89999999988774  588 88887752       


Q ss_pred             ----------------cHHHHHhcCCCC------C-----ccEEEEEcCCeEEEEEcCC
Q 031271          117 ----------------LPEAAKAFDLID------V-----LPTFVLVKRGKEIDRVVGA  148 (162)
Q Consensus       117 ----------------~~~l~~~~~i~~------~-----~Ptiv~~~~Gk~i~~~~g~  148 (162)
                                      ..++++.||+ .      +     .|+.+++.+|++.....|.
T Consensus        89 ~~~~~~~~~~~~l~D~~~~~~~~~gv-~~~~~~~g~~~~~~p~~~vid~G~i~~~~~~~  146 (162)
T 1tp9_A           89 AKSYPENKHVKFLADGSATYTHALGL-ELDLQEKGLGTRSRRFALLVDDLKVKAANIEG  146 (162)
T ss_dssp             HHTCTTCSSEEEEECTTSHHHHHTTC-EEEETTTTSEEEECCEEEEEETTEEEEEEECS
T ss_pred             HHhcCCCCCeEEEECCCchHHHHcCc-ccccccCCCCccceeEEEEEECCEEEEEEeeC
Confidence                            2357778887 5      2     7876666699998887765

>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1

Probab=99.16  E-value=5.6e-11  Score=89.10  Aligned_cols=79  Identities=18%  Similarity=0.286  Sum_probs=61.7

Q ss_pred             CceEEEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEEC----------------------------------------
Q 031271           75 VLKVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDV----------------------------------------  114 (162)
Q Consensus        75 ~k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~----------------------------------------  114 (162)
                      .+++|+.||.+||++|+++.|.++++.+.  ++.+..+..                                        
T Consensus        86 ~k~~vv~F~d~~Cp~C~~~~~~l~~~~~~--~v~v~~~~~p~~~~~~~s~~~a~~~~~a~d~~~a~~~~~~~~~~~~~~~  163 (211)
T 1t3b_A           86 EKHVVTVFMDITCHYCHLLHQQLKEYNDL--GITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGNLPKEVKT  163 (211)
T ss_dssp             CSEEEEEEECTTCHHHHHHHTTHHHHHHT--TEEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTCCCSSCCC
T ss_pred             CCEEEEEEECCCCHhHHHHHHHHHHHHhC--CcEEEEEECCccCCCchHHHHHHHHHhCcCHHHHHHHHHcCCCCChHHH
Confidence            36679999999999999999999997663  444443322                                        


Q ss_pred             ----CCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHHHHHHH
Q 031271          115 ----DWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQMKTEKR  160 (162)
Q Consensus       115 ----d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~~l~~~  160 (162)
                          +++.++++++|| .++||+++ .||+   ++.|. ++++|+++|++.
T Consensus       164 ~~~v~~~~~l~~~~gV-~gTPt~vi-~nG~---~~~G~~~~~~l~~~l~~~  209 (211)
T 1t3b_A          164 PNIVKKHYELGIQFGV-RGTPSIVT-STGE---LIGGYLKPADLLRALEET  209 (211)
T ss_dssp             SSHHHHHHHHHHHHTC-CSSCEEEC-TTSC---CCCSCCCHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCC-CcCCEEEE-eCCE---EecCCCCHHHHHHHHHhc
Confidence                123567889999 99999987 7887   45787 899999999875

>3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti}

Probab=99.15  E-value=1e-10  Score=86.08  Aligned_cols=107  Identities=14%  Similarity=0.098  Sum_probs=76.4

Q ss_pred             eeeeccccceeEEec--CC-CeeeeeC----ceE-EEEEecCCChhhhh-hhHHHHHHHHhcC--CcE-EEEEECCC---
Q 031271           52 FCLIYCINEMVLNIN--DG-GNVVFWV----LKV-VIYYTAAWCGPCKF-IEPYVKDFAAMYT--DVQ-FIKIDVDW---  116 (162)
Q Consensus        52 ~~~~~~~~~~~~~~~--~~-~~~~~~~----k~v-vv~F~a~wC~~C~~-~~~~l~~~~~~~~--~v~-f~~vd~d~---  116 (162)
                      .......|+|.+.+.  +| +.+..++    |++ |++||++||++|.. ..|.|.++.++|.  ++. ++.|+.|.   
T Consensus        26 l~vG~~aPdf~l~~~~~~G~~~v~L~d~~~Gk~vvL~f~~a~wcp~C~~~e~p~l~~~~~~~~~~gv~~vv~Is~d~~~~  105 (184)
T 3uma_A           26 IAVGDKLPNATFKEKTADGPVEVTTELLFKGKRVVLFAVPGAFTPTCSLNHLPGYLENRDAILARGVDDIAVVAVNDLHV  105 (184)
T ss_dssp             CCTTCBCCCCEEEEEETTEEEEEEHHHHHTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHTTTCCEEEEEESSCHHH
T ss_pred             CCCCCCCCCcEeecccCCCceEEeHHHHhCCCCEEEEEEcCCCCCCcCHHHHHHHHHHHHHHHHcCCCEEEEEECCCHHH
Confidence            344456788999987  88 7775543    555 55567999999999 6999999998884  487 99888863   


Q ss_pred             --------------------cHHHHHhcCCCCC-----------ccEEEEEcCCeEEEEEcCCC-----HHHHHHHHHH
Q 031271          117 --------------------LPEAAKAFDLIDV-----------LPTFVLVKRGKEIDRVVGAK-----KDELQMKTEK  159 (162)
Q Consensus       117 --------------------~~~l~~~~~i~~~-----------~Ptiv~~~~Gk~i~~~~g~~-----~~~l~~~l~~  159 (162)
                                          ..++++.||+ ..           .|+.+++++|++.....+.+     ...+++.|++
T Consensus       106 ~~~f~~~~~~~~~fp~l~D~~~~va~~yGv-~~~~~~~g~g~~~~r~tfiIddG~I~~~~~~~~~g~~~~~~~~~vL~~  183 (184)
T 3uma_A          106 MGAWATHSGGMGKIHFLSDWNAAFTKAIGM-EIDLSAGTLGIRSKRYSMLVEDGVVKALNIEESPGQATASGAAAMLEL  183 (184)
T ss_dssp             HHHHHHHHTCTTTSEEEECTTCHHHHHTTC-EEEEGGGTCEEEECCEEEEEETTEEEEEEECSSTTCCSTTSHHHHHHH
T ss_pred             HHHHHHHhCCCCceEEEEcCchHHHHHcCC-ceeccccCCcccceeEEEEECCCEEEEEEEeCCCCCCcCCCHHHHHhh
Confidence                                2357778887 52           46555558999999887652     3445555543

>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C

Probab=99.11  E-value=3.1e-10  Score=87.51  Aligned_cols=105  Identities=10%  Similarity=0.029  Sum_probs=79.0

Q ss_pred             eccccceeEEe---cCCCeeeeeC---ceEEEEEe-cCCChhhhhhhHHHHHHHHhcC--CcEEEEEECCCc--------
Q 031271           55 IYCINEMVLNI---NDGGNVVFWV---LKVVIYYT-AAWCGPCKFIEPYVKDFAAMYT--DVQFIKIDVDWL--------  117 (162)
Q Consensus        55 ~~~~~~~~~~~---~~~~~~~~~~---k~vvv~F~-a~wC~~C~~~~~~l~~~~~~~~--~v~f~~vd~d~~--------  117 (162)
                      ....|+|.+.+   .+|+.+..++   |++||+|| ++||++|....|.|.++.++|.  ++.++.|.+|..        
T Consensus        65 G~~aPdF~l~~l~d~~G~~vsLsd~kGK~vvL~F~~a~~cp~C~~el~~l~~l~~~~~~~gv~vv~IS~D~~~~~~~~~~  144 (254)
T 3tjj_A           65 SKPAPYWEGTAVIDGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSVDSQFTHLAWIN  144 (254)
T ss_dssp             TSBCCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCTTCSSCCHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHT
T ss_pred             CCCCCCcEeeeecCCCCcEEeHHHHCCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEcCCCHHHHHHHHH
Confidence            34577888764   3556776655   88999999 9999999999999999999885  488888887632        


Q ss_pred             --------------------HHHHHhcCCCC------CccEEEEE-cCCeEEEEEcCC-----CHHHHHHHHHHH
Q 031271          118 --------------------PEAAKAFDLID------VLPTFVLV-KRGKEIDRVVGA-----KKDELQMKTEKR  160 (162)
Q Consensus       118 --------------------~~l~~~~~i~~------~~Ptiv~~-~~Gk~i~~~~g~-----~~~~l~~~l~~~  160 (162)
                                          ..+++.||+ .      .+|+++++ ++|+++....+.     +.+++.+.|+.+
T Consensus       145 ~~~~~~g~~~~~fp~l~D~~~~va~~ygv-~~~~~g~~~p~tflID~~G~I~~~~~~~~~~~~~~~eil~~L~al  218 (254)
T 3tjj_A          145 TPRRQGGLGPIRIPLLSDLTHQISKDYGV-YLEDSGHTLRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAF  218 (254)
T ss_dssp             SCGGGTSCCSCSSCEEECTTSHHHHHHTC-EETTTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHH
T ss_pred             HHHHhcCCcccccceeeCcHHHHHHHcCC-ccccCCCccceEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHhh
Confidence                                246777777 5      47877776 799998887642     467777777643

>3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2, Pro structure initiative; HET: MSE; 1.80A {Chromobacterium violaceum}

Probab=99.10  E-value=1.7e-09  Score=81.95  Aligned_cols=104  Identities=11%  Similarity=-0.008  Sum_probs=80.1

Q ss_pred             eeeccccceeEEecCCCeeeeeC---ceEEEEEecCC-Chhhh-----hhhHHHHHHHHhcCCcEEEEEECC--------
Q 031271           53 CLIYCINEMVLNINDGGNVVFWV---LKVVIYYTAAW-CGPCK-----FIEPYVKDFAAMYTDVQFIKIDVD--------  115 (162)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~---k~vvv~F~a~w-C~~C~-----~~~~~l~~~~~~~~~v~f~~vd~d--------  115 (162)
                      ......|+|.+.+.+|+.+..++   |+|||+||..| |++|.     ...+.|.+.   |.++.++.|+.|        
T Consensus        23 ~vG~~APdFtL~d~~G~~vsLsd~~Gk~vVL~F~ps~~cp~C~~~~~~~El~~~~~~---~~gv~VvgIS~Ds~~~~~~f   99 (224)
T 3keb_A           23 RKGDYLPSFMLVDDQKHDAALESFSHTPKLIVTLLSVDEDEHAGLLLLRETRRFLDS---WPHLKLIVITVDSPSSLARA   99 (224)
T ss_dssp             CTTCBCCCCEEEETTSCEEEGGGGTTCCEEEEECSCTTCSTTTSHHHHHHHHHHHTT---CTTSEEEEEESSCHHHHHHH
T ss_pred             CCCCCCCCeEEECCCCCEEeHHHhCCCcEEEEEEeCCCCCCCCCCccHHHHHHHHHH---cCCCEEEEEECCCHHHHHHH
Confidence            34445788999999999997765   88999999988 99999     666666665   677888888775        


Q ss_pred             --------------C-cHHHHHhcCCCCC---------ccEEEEE-cCCeEEEEEcC------CCHHHHHHHHHHH
Q 031271          116 --------------W-LPEAAKAFDLIDV---------LPTFVLV-KRGKEIDRVVG------AKKDELQMKTEKR  160 (162)
Q Consensus       116 --------------~-~~~l~~~~~i~~~---------~Ptiv~~-~~Gk~i~~~~g------~~~~~l~~~l~~~  160 (162)
                                    . ...+++.||+ ..         .|+.+++ ++|++......      .+.+++.+.|++.
T Consensus       100 ~~~~gl~~fplLsD~~~~~vak~yGv-~~~~~~~~G~~~p~tfvID~dG~I~~~~~~~~~~~~pd~~evl~~L~~l  174 (224)
T 3keb_A          100 RHEHGLPNIALLSTLRGRDFHKRYGV-LITEYPLSGYTSPAIILADAANVVHYSERLANTRDFFDFDAIEKLLQEG  174 (224)
T ss_dssp             HHHHCCTTCEEEESTTCTTHHHHTTC-BCCSTTSTTCBCCEEEEECTTCBEEEEEECSBTTCCCCHHHHHHHHHHH
T ss_pred             HHHcCCCCceEEEcCCchHHHHHhCC-ccccccccCCccCEEEEEcCCCEEEEEEecCCCCCCCCHHHHHHHHHHh
Confidence                          2 3568889998 64         6877666 79999887643      2578888877754

>3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} SCOP: c.47.1.10 PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A

Probab=99.08  E-value=6.2e-10  Score=81.09  Aligned_cols=106  Identities=17%  Similarity=0.052  Sum_probs=74.9

Q ss_pred             eeeccccceeEE-ecCCCeeeeeC----ceEEEEE-ecCCChhhh-hhhHHHHHHHHhcC--CcEEEE-EECCC------
Q 031271           53 CLIYCINEMVLN-INDGGNVVFWV----LKVVIYY-TAAWCGPCK-FIEPYVKDFAAMYT--DVQFIK-IDVDW------  116 (162)
Q Consensus        53 ~~~~~~~~~~~~-~~~~~~~~~~~----k~vvv~F-~a~wC~~C~-~~~~~l~~~~~~~~--~v~f~~-vd~d~------  116 (162)
                      ......|+|.+. +.+|+.+..++    |+|+|+| |++||++|. ...|.|.++.++|.  ++.++. |..|.      
T Consensus        16 ~vG~~aPdf~l~~~~~g~~v~L~d~~~gk~vvL~f~pa~wcp~C~~~e~p~l~~~~~~~~~~gv~vv~~iS~D~~~~~~~   95 (173)
T 3mng_A           16 KVGDAIPAVEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGVQVVACLSVNDAFVTGE   95 (173)
T ss_dssp             CTTCBCCCCEEECSSTTCEEEHHHHTTTSEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTTCCEEEEEESSCHHHHHH
T ss_pred             CCCCCCCCeEeeeCCCCCEEEhHHHhCCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHH
Confidence            334457889999 89999886543    6665555 599999999 58899999988874  477775 76652      


Q ss_pred             -----------------cHHHHHhcCCCC-------------CccEEEEEcCCeEEEEEcCC-----CHHHHHHHHHH
Q 031271          117 -----------------LPEAAKAFDLID-------------VLPTFVLVKRGKEIDRVVGA-----KKDELQMKTEK  159 (162)
Q Consensus       117 -----------------~~~l~~~~~i~~-------------~~Ptiv~~~~Gk~i~~~~g~-----~~~~l~~~l~~  159 (162)
                                       ..++++.||+ .             ..|+.+++.+|++.....+.     +..+.+..|++
T Consensus        96 f~~~~~~~~~fp~l~D~~~~va~~yGv-~~~~~~~~~~g~~~~~r~tfvIDdG~I~~~~v~~~~~g~~~~~~~~vl~~  172 (173)
T 3mng_A           96 WGRAHKAEGKVRLLADPTGAFGKETDL-LLDDSLVSIFGNRRLKRFSMVVQDGIVKALNVEPDGTGLTCSLAPNIISQ  172 (173)
T ss_dssp             HHHHTTCTTTCEEEECTTCHHHHHHTC-BCCSTTHHHHSSCCBCCEEEEEETTEEEEEEECTTSSCSSTTSHHHHHHH
T ss_pred             HHHHhCCCCceEEEECCChHHHHHhCC-CcccccccccCCcceEEEEEEEECCEEEEEEEeCCCCCcchHHHHHHHHh
Confidence                             2357888888 5             24865555699998888764     34555555543

>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0

Probab=99.08  E-value=3.7e-10  Score=82.77  Aligned_cols=84  Identities=19%  Similarity=0.188  Sum_probs=65.5

Q ss_pred             CceEEEEEecCCChhhhhhhHHHHHHHHhcCC-cEEEEEECC--------------------------------------
Q 031271           75 VLKVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVD--------------------------------------  115 (162)
Q Consensus        75 ~k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~-v~f~~vd~d--------------------------------------  115 (162)
                      .+++|+.||..||++|+.+.|.+.++.+++++ +.|..+.+.                                      
T Consensus        25 ~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~~v~~~~~p~~~~~~~~~aa~a~~aa~~~g~~~~~~~~lf~~~~~~~~~  104 (192)
T 3h93_A           25 GKIEVVELFWYGCPHCYAFEPTIVPWSEKLPADVHFVRLPALFGGIWNVHGQMFLTLESMGVEHDVHNAVFEAIHKEHKK  104 (192)
T ss_dssp             TSEEEEEEECTTCHHHHHHHHHHHHHHHTCCTTEEEEEEECCCSTHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHTSCCC
T ss_pred             CCCEEEEEECCCChhHHHhhHHHHHHHHhCCCCeEEEEEehhhccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCcC
Confidence            46669999999999999999999999999986 777655542                                      


Q ss_pred             -----------------------------------CcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHHHHHH
Q 031271          116 -----------------------------------WLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQMKTEK  159 (162)
Q Consensus       116 -----------------------------------~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~~l~~  159 (162)
                                                         .+..+++++|| .++||+++  ||+.+....|. +.+.|.+.|+.
T Consensus       105 ~~~~~~l~~~a~~~Gld~~~~~~~~~~~~~~~~v~~~~~~a~~~gv-~gtPt~~v--ng~~~~~~~G~~~~e~l~~~i~~  181 (192)
T 3h93_A          105 LATPEEMADFLAGKGVDKEKFLSTYNSFAIKGQMEKAKKLAMAYQV-TGVPTMVV--NGKYRFDIGSAGGPEETLKLADY  181 (192)
T ss_dssp             CCSHHHHHHHHHTTTCCHHHHHHHHTCHHHHHHHHHHHHHHHHHTC-CSSSEEEE--TTTEEEEHHHHTSHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHcCCCHHHHHHHhhCHHHHHHHHHHHHHHHHhCC-CCCCeEEE--CCEEEecccccCCHHHHHHHHHH
Confidence                                               01134567899 99999987  88877655566 78888888776


Q ss_pred             Hh
Q 031271          160 RR  161 (162)
Q Consensus       160 ~~  161 (162)
                      .+
T Consensus       182 l~  183 (192)
T 3h93_A          182 LI  183 (192)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A*

Probab=99.07  E-value=1e-10  Score=77.71  Aligned_cols=76  Identities=12%  Similarity=0.146  Sum_probs=54.3

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCc-------HHHHHhcCCCCCccEEEEEcCCeEEEEEcCC---
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWL-------PEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA---  148 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~-------~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~---  148 (162)
                      ++.|+++||++|+++.+.|+++...+++  |..+|++.+       ..+.+.+|+ ..+|+++  .+|+.+......   
T Consensus        14 v~~f~~~~C~~C~~~~~~L~~~~~~~~~--~~~vdi~~~~~~~~~~~~l~~~~g~-~~vP~i~--~~g~~i~g~~~~~~~   88 (105)
T 1kte_A           14 VVVFIKPTCPFCRKTQELLSQLPFKEGL--LEFVDITATSDTNEIQDYLQQLTGA-RTVPRVF--IGKECIGGCTDLESM   88 (105)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHSCBCTTS--EEEEEGGGSTTHHHHHHHHHHHHSC-CCSCEEE--ETTEEEESHHHHHHH
T ss_pred             EEEEEcCCCHhHHHHHHHHHHcCCCCCc--cEEEEccCCCCHHHHHHHHHHHhCC-CCcCeEE--ECCEEEeccHHHHHH
Confidence            5779999999999999999987666655  555666654       257889999 9999974  488776432111   


Q ss_pred             -CHHHHHHHHHH
Q 031271          149 -KKDELQMKTEK  159 (162)
Q Consensus       149 -~~~~l~~~l~~  159 (162)
                       ...+|.++|+.
T Consensus        89 ~~~g~L~~~l~~  100 (105)
T 1kte_A           89 HKRGELLTRLQQ  100 (105)
T ss_dssp             HHHTHHHHHHHH
T ss_pred             HHCCcHHHHHHH
Confidence             24556666654

>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10

Probab=99.05  E-value=2.1e-09  Score=81.27  Aligned_cols=103  Identities=13%  Similarity=0.089  Sum_probs=77.7

Q ss_pred             ccccceeEEecCCCeeeeeC---c--eEEEEEecCCChhhhhhhHHHHHHHHhcC--CcEEEEEECCCc-----------
Q 031271           56 YCINEMVLNINDGGNVVFWV---L--KVVIYYTAAWCGPCKFIEPYVKDFAAMYT--DVQFIKIDVDWL-----------  117 (162)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~---k--~vvv~F~a~wC~~C~~~~~~l~~~~~~~~--~v~f~~vd~d~~-----------  117 (162)
                      ...|+|.+.+.+| .+..++   +  .||++||++||++|....+.|.++.++|.  ++.++.|.+|..           
T Consensus         9 ~~aP~F~l~~~~G-~v~l~d~~Gk~~vvL~~~~a~~cp~C~~el~~l~~l~~~f~~~~v~vi~IS~D~~~~~~~~~~~i~   87 (224)
T 1prx_A            9 DVAPNFEANTTVG-RIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRNVKLIALSIDSVEDHLAWSKDIN   87 (224)
T ss_dssp             CBCCCCEEEETTE-EEEHHHHHTTSEEEEEEESCSSCHHHHHHHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHH
T ss_pred             CCCCCcEEecCCC-CEEHHHHcCCCeEEEEEECCCCCCCcHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHH
Confidence            4568899999999 776544   4  45566689999999999999999998885  488888887632           


Q ss_pred             --------------------HHHHHhcCCCC------------CccEEEEE-cCCeEEEEEcC-----CCHHHHHHHHHH
Q 031271          118 --------------------PEAAKAFDLID------------VLPTFVLV-KRGKEIDRVVG-----AKKDELQMKTEK  159 (162)
Q Consensus       118 --------------------~~l~~~~~i~~------------~~Ptiv~~-~~Gk~i~~~~g-----~~~~~l~~~l~~  159 (162)
                                          .++++.||+ .            .+|+++++ ++|++...+.+     .+.+++.+.|+.
T Consensus        88 ~~~~~~~~~~~~fpil~D~~~~va~~ygv-~~~~~~~~~g~~~~~p~~fiID~~G~I~~~~~~~~~~gr~~~eil~~i~~  166 (224)
T 1prx_A           88 AYNSEEPTEKLPFPIIDDRNRELAILLGM-LDPAEKDEKGMPVTARVVFVFGPDKKLKLSILYPATTGRNFDEILRVVIS  166 (224)
T ss_dssp             HHTTSCCCSCCSSCEEECTTCHHHHHTTS-SCSCTTCSSSCCTTCCEEEEECTTSBEEEEEECCTTBCCCHHHHHHHHHH
T ss_pred             HhhCcccccCcCcceeecCchHHHHHhCC-CCcccccCCCccccceEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHH
Confidence                                235566776 3            37887777 79999988864     367888888775


Q ss_pred             H
Q 031271          160 R  160 (162)
Q Consensus       160 ~  160 (162)
                      +
T Consensus       167 l  167 (224)
T 1prx_A          167 L  167 (224)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A

Probab=99.05  E-value=7.4e-10  Score=84.56  Aligned_cols=83  Identities=14%  Similarity=0.234  Sum_probs=63.6

Q ss_pred             ceEEEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECC----------------------------------------
Q 031271           76 LKVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVD----------------------------------------  115 (162)
Q Consensus        76 k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d----------------------------------------  115 (162)
                      +.+|+.|+.+||++|+++.+.+.++.+. .++.|..+...                                        
T Consensus        98 k~~v~~F~D~~Cp~C~~~~~~l~~~~~~-g~v~v~~~~~p~~~~~s~~~a~a~~~a~d~~~~~~~~~~~~~~~~l~~~~~  176 (241)
T 1v58_A           98 PVIVYVFADPFCPYCKQFWQQARPWVDS-GKVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYEASGGKLKLNVPAN  176 (241)
T ss_dssp             SEEEEEEECTTCHHHHHHHHHHHHHHHT-TSEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHHHTTTCCCCCCCSS
T ss_pred             CeEEEEEECCCChhHHHHHHHHHHHHhC-CcEEEEEEECCcCCCcHHHHHHHHHHccCHHHHHHHHHHHhccCCCCcccc
Confidence            5569999999999999999999988775 35666554431                                        


Q ss_pred             ----------CcHHHHHhcCCCCCccEEEEEc-CCeEEEEEcCC-CHHHHHHHHHHHh
Q 031271          116 ----------WLPEAAKAFDLIDVLPTFVLVK-RGKEIDRVVGA-KKDELQMKTEKRR  161 (162)
Q Consensus       116 ----------~~~~l~~~~~i~~~~Ptiv~~~-~Gk~i~~~~g~-~~~~l~~~l~~~~  161 (162)
                                .+..+++++|| .++||+++.. +|+. .++.|. +.+.|+++|++.+
T Consensus       177 ~~~~~~~~v~~~~~l~~~~gv-~gtPt~vi~~~~G~~-~~~~G~~~~~~L~~~l~~~~  232 (241)
T 1v58_A          177 VSTEQMKVLSDNEKLMDDLGA-NVTPAIYYMSKENTL-QQAVGLPDQKTLNIIMGNKL  232 (241)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTC-CSSCEEEEEETTTEE-EEEESSCCHHHHHHHTTC--
T ss_pred             CCHHHHHHHHHHHHHHHHcCC-CCCCEEEEECCCCCE-EEecCCCCHHHHHHHHHHHH
Confidence                      12356789999 9999999985 5764 567898 8999999987654

>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B

Probab=99.03  E-value=4.6e-11  Score=81.11  Aligned_cols=76  Identities=12%  Similarity=0.123  Sum_probs=53.9

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcH-------HHHHhcCCCCCccEEEEEcCCeEEEEEcCC---
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLP-------EAAKAFDLIDVLPTFVLVKRGKEIDRVVGA---  148 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~-------~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~---  148 (162)
                      ++.|+++||++|+++.+.|++....+++  |..+|++.++       ++.+.+|+ ..+|++++  +|+.+....+.   
T Consensus        21 vv~f~~~~Cp~C~~~~~~L~~~~~~~~~--~~~vdi~~~~~~~~~~~~l~~~~g~-~~vP~v~i--~g~~igg~~~~~~~   95 (114)
T 2hze_A           21 VTIFVKYTCPFCRNALDILNKFSFKRGA--YEIVDIKEFKPENELRDYFEQITGG-KTVPRIFF--GKTSIGGYSDLLEI   95 (114)
T ss_dssp             EEEEECTTCHHHHHHHHHHTTSCBCTTS--EEEEEGGGSSSHHHHHHHHHHHHSC-CSSCEEEE--TTEEEESHHHHHHH
T ss_pred             EEEEEeCCChhHHHHHHHHHHcCCCcCc--eEEEEccCCCChHHHHHHHHHHhCC-CCcCEEEE--CCEEEeCcHHHHHH
Confidence            6779999999999999998775333222  7788887664       78889999 99998744  88876533211   


Q ss_pred             -CHHHHHHHHHH
Q 031271          149 -KKDELQMKTEK  159 (162)
Q Consensus       149 -~~~~l~~~l~~  159 (162)
                       +..+|.++|++
T Consensus        96 ~~~~~L~~~L~~  107 (114)
T 2hze_A           96 DNMDALGDILSS  107 (114)
T ss_dssp             HHTTCHHHHHHH
T ss_pred             HHCChHHHHHHH
Confidence             23446666654

>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis}

Probab=99.02  E-value=1.1e-09  Score=80.41  Aligned_cols=41  Identities=27%  Similarity=0.391  Sum_probs=36.5

Q ss_pred             CceEEEEEecCCChhhhhhhHHHHHHHHhcCC-cEEEEEECC
Q 031271           75 VLKVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVD  115 (162)
Q Consensus        75 ~k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~-v~f~~vd~d  115 (162)
                      .+++|+.||.+||++|+.+.|.++++.+.+++ +.|..++++
T Consensus        25 ~~~~vv~f~d~~Cp~C~~~~~~l~~l~~~~~~~v~~~~~~~~   66 (195)
T 3hd5_A           25 GKIEVLEFFAYTCPHCAAIEPMVEDWAKTAPQDVVLKQVPIA   66 (195)
T ss_dssp             TCEEEEEEECTTCHHHHHHHHHHHHHHHTCCTTEEEEEEECC
T ss_pred             CCeEEEEEECCCCccHHHhhHHHHHHHHHCCCCeEEEEEecc
Confidence            46679999999999999999999999999985 888888774

>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A

Probab=99.01  E-value=1.2e-09  Score=82.34  Aligned_cols=103  Identities=10%  Similarity=0.142  Sum_probs=76.2

Q ss_pred             ccccceeEEec--CCCeeeeeC---c--eEEEEEecCCChhhhhhhHHHHHHHHhcC--CcEEEEEECCCc---------
Q 031271           56 YCINEMVLNIN--DGGNVVFWV---L--KVVIYYTAAWCGPCKFIEPYVKDFAAMYT--DVQFIKIDVDWL---------  117 (162)
Q Consensus        56 ~~~~~~~~~~~--~~~~~~~~~---k--~vvv~F~a~wC~~C~~~~~~l~~~~~~~~--~v~f~~vd~d~~---------  117 (162)
                      ...|+|.+.+.  +| .+..++   +  .|+++||++||+.|....+.|.++.++|.  ++.++.|.+|..         
T Consensus         7 ~~aP~F~l~~~~~~G-~v~l~d~~Gk~~vvL~f~~a~~cp~C~~el~~l~~l~~~f~~~~v~vi~vS~D~~~~~~~~~~~   85 (220)
T 1xcc_A            7 ATFPNFTAKASGIDG-DFELYKYIENSWAILFSHPNDFTPVCTTELAELGKMHEDFLKLNCKLIGFSCNSKESHDKWIED   85 (220)
T ss_dssp             CBCCCCEECBTTCSS-CEEHHHHTTTSEEEEECCSCTTCHHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHH
T ss_pred             CCCCCcEeecccCCC-cEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHHH
Confidence            35678888888  88 665543   4  34555689999999999999999988885  488888887632         


Q ss_pred             -------------------HHHHHhcCCCC------------CccEEEEE-cCCeEEEEEc-----CCCHHHHHHHHHHH
Q 031271          118 -------------------PEAAKAFDLID------------VLPTFVLV-KRGKEIDRVV-----GAKKDELQMKTEKR  160 (162)
Q Consensus       118 -------------------~~l~~~~~i~~------------~~Ptiv~~-~~Gk~i~~~~-----g~~~~~l~~~l~~~  160 (162)
                                         ..+++.||+ .            .+|+++++ ++|++...+.     |.+.+++.+.|+.+
T Consensus        86 i~~~~~~~~~~fpil~D~~~~va~~ygv-~~~~~~~~~g~~~~~p~~flID~~G~I~~~~~~~~~~g~~~~ell~~i~~l  164 (220)
T 1xcc_A           86 IKYYGKLNKWEIPIVCDESRELANKLKI-MDEQEKDITGLPLTCRCLFFISPEKKIKATVLYPATTGRNAHEILRVLKSL  164 (220)
T ss_dssp             HHHHHTCSCCCCCEEECTTSHHHHHHTC-EEEEEECTTSCEEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             HHHHhcCCCCcceeEECchhHHHHHhCC-CCcccccCCCCCcccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHH
Confidence                               245666776 3            36887777 7999988875     34678888888764

>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}

Probab=99.01  E-value=2.7e-09  Score=70.01  Aligned_cols=73  Identities=22%  Similarity=0.453  Sum_probs=59.1

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHHHHHhc-----CCCCCccEEEEEcCCeEEEEEcCCCHHHH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAF-----DLIDVLPTFVLVKRGKEIDRVVGAKKDEL  153 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~l~~~~-----~i~~~~Ptiv~~~~Gk~i~~~~g~~~~~l  153 (162)
                      |+.|+.+|||+|.+....|++     .++.|..+|++.+++..+.+     |. ..+|++++ .||..+   .|++.++|
T Consensus         6 I~vYs~~~Cp~C~~aK~~L~~-----~gi~y~~idi~~d~~~~~~~~~~~~G~-~tVP~I~i-~Dg~~l---~~~~~~el   75 (92)
T 2lqo_A            6 LTIYTTSWCGYCLRLKTALTA-----NRIAYDEVDIEHNRAAAEFVGSVNGGN-RTVPTVKF-ADGSTL---TNPSADEV   75 (92)
T ss_dssp             EEEEECTTCSSHHHHHHHHHH-----TTCCCEEEETTTCHHHHHHHHHHSSSS-SCSCEEEE-TTSCEE---ESCCHHHH
T ss_pred             EEEEcCCCCHhHHHHHHHHHh-----cCCceEEEEcCCCHHHHHHHHHHcCCC-CEeCEEEE-eCCEEE---eCCCHHHH
Confidence            677999999999999988876     37888999999888755433     77 89998754 778765   47899999


Q ss_pred             HHHHHHHh
Q 031271          154 QMKTEKRR  161 (162)
Q Consensus       154 ~~~l~~~~  161 (162)
                      +++|.+..
T Consensus        76 ~~~L~el~   83 (92)
T 2lqo_A           76 KAKLVKIA   83 (92)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhc
Confidence            99998764

>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A

Probab=98.99  E-value=2.3e-09  Score=81.61  Aligned_cols=104  Identities=11%  Similarity=0.038  Sum_probs=79.0

Q ss_pred             eccccceeEEecCCCeeeeeC---c-eEEEEEe-cCCChhhhhhhHHHHHHHHhcC--CcEEEEEECCCc----------
Q 031271           55 IYCINEMVLNINDGGNVVFWV---L-KVVIYYT-AAWCGPCKFIEPYVKDFAAMYT--DVQFIKIDVDWL----------  117 (162)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~---k-~vvv~F~-a~wC~~C~~~~~~l~~~~~~~~--~v~f~~vd~d~~----------  117 (162)
                      ....|+|.+.+.+| .+..++   + .+||+|| ++||+.|....+.|.++.++|.  ++.++.|.+|..          
T Consensus         6 G~~aPdF~l~~~~G-~v~l~d~~Gk~~vvL~f~pa~~cpvC~~el~~l~~l~~ef~~~~v~vigIS~D~~~~~~~~~~~i   84 (233)
T 2v2g_A            6 GEVFPNFEADSTIG-KLKFHDWLGNSWGVLFSHPRDFTPVSTTELGRVIQLEGDFKKRGVKLIALSCDNVADHKEWSEDV   84 (233)
T ss_dssp             TCBCCCCEEEETTC-CEEHHHHHCSSEEEEEECSCSSCHHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHHHH
T ss_pred             CCCCCCcEEecCCC-CEEHHHHCCCCeEEEEEECCCCCCCcHHHHHHHHHHHHHHHHcCCEEEEEcCCCHHHHHHHHHHH
Confidence            34578899999999 676544   4 7899998 9999999999999999988874  588888877632          


Q ss_pred             -------------------HHHHHhcCCCC------------CccEEEEE-cCCeEEEEEcC-----CCHHHHHHHHHHH
Q 031271          118 -------------------PEAAKAFDLID------------VLPTFVLV-KRGKEIDRVVG-----AKKDELQMKTEKR  160 (162)
Q Consensus       118 -------------------~~l~~~~~i~~------------~~Ptiv~~-~~Gk~i~~~~g-----~~~~~l~~~l~~~  160 (162)
                                         .++++.||+ .            .+|+++++ ++|++...+.+     .+.+++++.|+.+
T Consensus        85 ~~~~~~~~~~~fpil~D~~~~va~~ygv-~~~~~~~~~g~~~~~p~~fiID~~G~I~~~~~~~~~~gr~~~eilr~l~~L  163 (233)
T 2v2g_A           85 KCLSGVKGDMPYPIIADETRELAVKLGM-VDPDERTSTGMPLTCRAVFIIGPDKKLKLSILYPATTGRNFSEILRVIDSL  163 (233)
T ss_dssp             HHHHTCCSSCSSCEEECTTCHHHHHTTC-EEEEEECTTCCEEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             HHhhCcccCCceEEEECChHHHHHHhCC-cCcccccCCCcccccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHH
Confidence                               135556665 4            47887777 79999887753     3678888887754

>2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein, oxidoreductase; 2.80A {Pisum sativum}

Probab=98.99  E-value=7.3e-10  Score=80.26  Aligned_cols=90  Identities=18%  Similarity=0.169  Sum_probs=64.0

Q ss_pred             cccceeEEec----CC-----Ceeeee----C-ceEEEEEecCCChhhhhh-hHHHHHHHHhcC--CcE-EEEEECCC--
Q 031271           57 CINEMVLNIN----DG-----GNVVFW----V-LKVVIYYTAAWCGPCKFI-EPYVKDFAAMYT--DVQ-FIKIDVDW--  116 (162)
Q Consensus        57 ~~~~~~~~~~----~~-----~~~~~~----~-k~vvv~F~a~wC~~C~~~-~~~l~~~~~~~~--~v~-f~~vd~d~--  116 (162)
                      ..|+|.+.+.    +|     +.+..+    . +.||++||++||++|... .|.|.++.++|.  ++. ++.|+.+.  
T Consensus        12 ~aP~f~l~~~~~~~~G~~~~~~~v~l~~~~~gk~vvl~~~~a~wcp~C~~eh~p~l~~~~~~~~~~g~~~vv~Is~d~~~   91 (171)
T 2pwj_A           12 AASNVSLQKARTWDEGVESKFSTTPVNDIFKDKKVVIFGLPGAYTGVCSSKHVPPYKHNIDKFKAKGVDSVICVAINDPY   91 (171)
T ss_dssp             CSSSBCCCSCEECCCSSCTTCCCEEHHHHHTTSEEEEEECSCTTCTTHHHHTHHHHHHTHHHHHHTTCSEEEEEESSCHH
T ss_pred             cCCCeEEecccccccCCccCcceEEHHHHhCCCCEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEeCCCHH
Confidence            4567777765    45     555432    2 356778999999999998 999999888774  588 98888763  


Q ss_pred             ---------------------cHHHHHhcCCCCC-----------cc-EEEEEcCCeEEEEEcCC
Q 031271          117 ---------------------LPEAAKAFDLIDV-----------LP-TFVLVKRGKEIDRVVGA  148 (162)
Q Consensus       117 ---------------------~~~l~~~~~i~~~-----------~P-tiv~~~~Gk~i~~~~g~  148 (162)
                                           ...+++.||+ ..           .| ++++. +|++...+.|.
T Consensus        92 ~~~~~~~~~~~~~~fp~l~D~~~~~~~~ygv-~~~~~~~~~g~~~~~~t~~I~-~G~I~~~~~~~  154 (171)
T 2pwj_A           92 TVNAWAEKIQAKDAIEFYGDFDGSFHKSLEL-TTDLSAGLLGIRSERWSAYVV-DGKVKALNVEE  154 (171)
T ss_dssp             HHHHHHHHTTCTTTSEEEECTTCHHHHHHTC-EEECTTTTCCEEECCEEEEEE-TTEEEEEEECS
T ss_pred             HHHHHHHHhCCCCceEEEECCccHHHHHhCC-ccccccccCCcccceeEEEEE-CCEEEEEEeec
Confidence                                 1246667776 42           33 55555 99999988775

>2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.99  E-value=6.7e-10  Score=77.17  Aligned_cols=73  Identities=18%  Similarity=0.340  Sum_probs=51.9

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCc---HH----HHHhcCCCCCccEEEEEcCCeEEEEEc---CC
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWL---PE----AAKAFDLIDVLPTFVLVKRGKEIDRVV---GA  148 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~---~~----l~~~~~i~~~~Ptiv~~~~Gk~i~~~~---g~  148 (162)
                      ++.|+++||++|+++.+.|+++     ++.|..+|++..   ++    +.+.+++ ..+|+++  .+|+.+....   +.
T Consensus        29 vvvf~~~~Cp~C~~~~~~L~~~-----~i~~~~vdid~~~~~~~~~~~l~~~~g~-~~vP~l~--i~G~~igg~~~l~~~  100 (130)
T 2cq9_A           29 VVIFSKTSCSYCTMAKKLFHDM-----NVNYKVVELDLLEYGNQFQDALYKMTGE-RTVPRIF--VNGTFIGGATDTHRL  100 (130)
T ss_dssp             EEEEECSSCSHHHHHHHHHHHH-----TCCCEEEETTTSTTHHHHHHHHHHHHSS-CCSSEEE--ETTEEEEEHHHHHHH
T ss_pred             EEEEEcCCChHHHHHHHHHHHc-----CCCcEEEECcCCcCcHHHHHHHHHHhCC-CCcCEEE--ECCEEEcChHHHHHH
Confidence            3449999999999999999886     345566777755   43    7889999 9999984  4888775431   22


Q ss_pred             -CHHHHHHHHHH
Q 031271          149 -KKDELQMKTEK  159 (162)
Q Consensus       149 -~~~~l~~~l~~  159 (162)
                       ....|.++|++
T Consensus       101 ~~~~~L~~~L~~  112 (130)
T 2cq9_A          101 HKEGKLLPLVHQ  112 (130)
T ss_dssp             HHHTSSHHHHHH
T ss_pred             HHcCcHHHHHHH
Confidence             23445666554

>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}

Probab=98.99  E-value=1.4e-09  Score=70.48  Aligned_cols=69  Identities=23%  Similarity=0.289  Sum_probs=54.4

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECC-----Cc----HHHHHhcCCCCCccEEEEEcCCeEEEEEcCCC
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVD-----WL----PEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAK  149 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d-----~~----~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~~  149 (162)
                      ++.|+++||++|+++.+.|++.     ++.+-.+|++     ..    +++.+.+++ ..+|++++  +|+.   +.|++
T Consensus        14 v~ly~~~~Cp~C~~~~~~L~~~-----gi~~~~~~v~~~~~~~~~~~~~~l~~~~g~-~~vP~l~~--~g~~---i~G~~   82 (92)
T 3ic4_A           14 VLMYGLSTCPHCKRTLEFLKRE-----GVDFEVIWIDKLEGEERKKVIEKVHSISGS-YSVPVVVK--GDKH---VLGYN   82 (92)
T ss_dssp             SEEEECTTCHHHHHHHHHHHHH-----TCCCEEEEGGGCCHHHHHHHHHHHHHHHSS-SCSCEEEE--TTEE---EESCC
T ss_pred             EEEEECCCChHHHHHHHHHHHc-----CCCcEEEEeeeCCccchHHHHHHHHHhcCC-CCcCEEEE--CCEE---EeCCC
Confidence            5669999999999999999886     3444455665     33    567788999 99999876  7854   45889


Q ss_pred             HHHHHHHHH
Q 031271          150 KDELQMKTE  158 (162)
Q Consensus       150 ~~~l~~~l~  158 (162)
                      +++|.++|+
T Consensus        83 ~~~l~~~l~   91 (92)
T 3ic4_A           83 EEKLKELIR   91 (92)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhc
Confidence            999999886

>2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A*

Probab=98.89  E-value=1.4e-09  Score=77.22  Aligned_cols=57  Identities=19%  Similarity=0.411  Sum_probs=44.0

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCc---H----HHHHhcCCCCCccEEEEEcCCeEEE
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWL---P----EAAKAFDLIDVLPTFVLVKRGKEID  143 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~---~----~l~~~~~i~~~~Ptiv~~~~Gk~i~  143 (162)
                      ++.|+++||++|+++.+.|+++     ++.|..+|++..   +    ++.+.+|+ ..+|+++  .+|+.+.
T Consensus        51 Vvvf~~~~Cp~C~~~k~~L~~~-----~i~~~~vdId~~~~~~~~~~~L~~~~g~-~tvP~if--i~G~~ig  114 (146)
T 2ht9_A           51 VVIFSKTSCSYCTMAKKLFHDM-----NVNYKVVELDLLEYGNQFQDALYKMTGE-RTVPRIF--VNGTFIG  114 (146)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHH-----TCCCEEEEGGGCTTHHHHHHHHHHHHSC-CCSCEEE--ETTEEEE
T ss_pred             EEEEECCCChhHHHHHHHHHHc-----CCCeEEEECccCcCCHHHHHHHHHHhCC-CCcCeEE--ECCEEEe
Confidence            3459999999999999999886     344556666644   4    37889999 9999984  4887764

>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A*

Probab=98.88  E-value=1.3e-09  Score=74.58  Aligned_cols=60  Identities=10%  Similarity=0.266  Sum_probs=47.0

Q ss_pred             EEEEecCCChhhhhh-hHHHHHHHHhcCCcEEEEEECCCcH-------HHHHhcCCCCCccEEEEEcCCeEEE
Q 031271           79 VIYYTAAWCGPCKFI-EPYVKDFAAMYTDVQFIKIDVDWLP-------EAAKAFDLIDVLPTFVLVKRGKEID  143 (162)
Q Consensus        79 vv~F~a~wC~~C~~~-~~~l~~~~~~~~~v~f~~vd~d~~~-------~l~~~~~i~~~~Ptiv~~~~Gk~i~  143 (162)
                      ++.|+++||++|+++ .+.|++...  +.+.|..+|++..+       ++.+.+|+ ..+|++  |.+|+.+.
T Consensus        27 Vvvf~~~~Cp~C~~alk~~L~~~~~--~~i~~~~vdid~~~~~~~~~~~l~~~~g~-~tvP~v--fi~g~~ig   94 (118)
T 3c1r_A           27 IFVASKTYCPYCHAALNTLFEKLKV--PRSKVLVLQLNDMKEGADIQAALYEINGQ-RTVPNI--YINGKHIG   94 (118)
T ss_dssp             EEEEECSSCHHHHHHHHHHHTTSCC--CGGGEEEEEGGGSTTHHHHHHHHHHHHSC-CSSCEE--EETTEEEE
T ss_pred             EEEEEcCCCcCHHHHHHHHHHHcCC--CCCCeEEEECccCCChHHHHHHHHHHhCC-CCcCEE--EECCEEEE
Confidence            566999999999999 888766531  23788888888654       58889999 999987  45888764

>3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics, rossmann fold; 1.10A {Methanosarcina mazei}

Probab=98.87  E-value=8.9e-09  Score=68.40  Aligned_cols=69  Identities=30%  Similarity=0.376  Sum_probs=50.0

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCC--c---HHHH----HhcCCCCCccEEEEEcCCeEEEEEcCCC
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDW--L---PEAA----KAFDLIDVLPTFVLVKRGKEIDRVVGAK  149 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~--~---~~l~----~~~~i~~~~Ptiv~~~~Gk~i~~~~g~~  149 (162)
                      ++.|+++||++|+++.+.|++.     ++.+-.+|++.  .   +++.    +.++. ..+|++++ .+|+.+   .|++
T Consensus        24 v~ly~~~~Cp~C~~ak~~L~~~-----~i~y~~vdI~~~~~~~~~~~~~~l~~~~g~-~~vP~l~i-~~~~~i---gg~~   93 (103)
T 3nzn_A           24 VIMYGLSTCVWCKKTKKLLTDL-----GVDFDYVYVDRLEGKEEEEAVEEVRRFNPS-VSFPTTII-NDEKAI---VGFK   93 (103)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHH-----TBCEEEEEGGGCCHHHHHHHHHHHHHHCTT-CCSCEEEE-TTTEEE---ESCC
T ss_pred             EEEEcCCCCchHHHHHHHHHHc-----CCCcEEEEeeccCcccHHHHHHHHHHhCCC-CccCEEEE-CCCEEE---EcCC
Confidence            6779999999999999999886     34455566653  1   2332    34689 99999876 334543   5889


Q ss_pred             HHHHHHHH
Q 031271          150 KDELQMKT  157 (162)
Q Consensus       150 ~~~l~~~l  157 (162)
                      +++|+++|
T Consensus        94 ~~~l~~~L  101 (103)
T 3nzn_A           94 EKEIRESL  101 (103)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHh
Confidence            99998876

>4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima}

Probab=98.81  E-value=3.6e-08  Score=78.38  Aligned_cols=100  Identities=10%  Similarity=0.074  Sum_probs=76.3

Q ss_pred             ccceeEEecCCCeeeeeC---ceEEEEEe-cCCChhhhhhhHHHHHHHHhcCCcEEEEEECCC-----------------
Q 031271           58 INEMVLNINDGGNVVFWV---LKVVIYYT-AAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDW-----------------  116 (162)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~---k~vvv~F~-a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~-----------------  116 (162)
                      .|+|++.+.+|+.+..++   |+|||+|| +.||+.|....+.|.+  ..+.++.++.|+.|.                 
T Consensus         4 ~p~F~l~~~~G~~~~Lsd~~Gk~vvl~F~p~~~tp~C~~e~~~~~~--~~~~~~~v~gis~D~~~~~~~f~~~~~l~fp~   81 (322)
T 4eo3_A            4 VKHFELLTDEGKTFTHVDLYGKYTILFFFPKAGTSGSTREAVEFSR--ENFEKAQVVGISRDSVEALKRFKEKNDLKVTL   81 (322)
T ss_dssp             CCCCEEEETTSCEEEGGGTTTSEEEEEECSSTTSHHHHHHHHHHHH--SCCTTEEEEEEESCCHHHHHHHHHHHTCCSEE
T ss_pred             CCCcEEECCCcCEEeHHHhCCCeEEEEEECCCCCCCCHHHHHHHHH--HhhCCCEEEEEeCCCHHHHHHHHHhhCCceEE
Confidence            589999999999998877   89999999 6799999987776654  345678888888762                 


Q ss_pred             ----cHHHHHhcCCCCC----ccEEEEE-cCCeEEEEEcCC----CHHHHHHHHHHH
Q 031271          117 ----LPEAAKAFDLIDV----LPTFVLV-KRGKEIDRVVGA----KKDELQMKTEKR  160 (162)
Q Consensus       117 ----~~~l~~~~~i~~~----~Ptiv~~-~~Gk~i~~~~g~----~~~~l~~~l~~~  160 (162)
                          ...+++.||+ ..    +|+.+++ ++|++...+.+.    ..+++.++|++.
T Consensus        82 l~D~~~~v~~~ygv-~~~~~~~r~tfiId~~G~i~~~~~~v~~~~h~~~~l~~~~~~  137 (322)
T 4eo3_A           82 LSDPEGILHEFFNV-LENGKTVRSTFLIDRWGFVRKEWRRVKVEGHVQEVKEALDRL  137 (322)
T ss_dssp             EECTTCHHHHHTTC-EETTEECCEEEEECTTSBEEEEEESCCSTTHHHHHHHHHHHH
T ss_pred             EEcCchHHHHhcCC-CCCCcCccEEEEECCCCEEEEEEeCCCccccHHHHHHHHhhh
Confidence                3468888988 53    5655555 899988776665    257777777764

>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A

Probab=98.80  E-value=2.7e-08  Score=73.24  Aligned_cols=40  Identities=20%  Similarity=0.380  Sum_probs=35.3

Q ss_pred             CceEEEEEecCCChhhhhhhHHHHHHHHhcCC-cEEEEEEC
Q 031271           75 VLKVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDV  114 (162)
Q Consensus        75 ~k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~-v~f~~vd~  114 (162)
                      .+++|+.|+..||++|+.+.|.++++.+++++ +.|..+.+
T Consensus        24 ~~v~vv~f~d~~Cp~C~~~~~~l~~~~~~~~~~v~~~~~p~   64 (193)
T 3hz8_A           24 GKVEVLEFFGYFCPHCAHLEPVLSKHAKSFKDDMYLRTEHV   64 (193)
T ss_dssp             TSEEEEEEECTTCHHHHHHHHHHHHHHTTCCTTEEEEEEEC
T ss_pred             CCcEEEEEECCCChhHHHHHHHHHHHHHHCCCCeEEEEecC
Confidence            36679999999999999999999999999986 88877766

>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A

Probab=98.79  E-value=3.2e-08  Score=71.28  Aligned_cols=84  Identities=18%  Similarity=0.236  Sum_probs=65.1

Q ss_pred             CceEEEEEecCCChhhhhhhHHHHHHHHhcCC-cEEEEEECC--------------------------------------
Q 031271           75 VLKVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVD--------------------------------------  115 (162)
Q Consensus        75 ~k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~-v~f~~vd~d--------------------------------------  115 (162)
                      .+++|+.|+.-.||+|+++.+.+.++.+++++ +.+..+...                                      
T Consensus        21 ~~~~vvEf~dy~Cp~C~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~~~~~~~~~~~~~~~~~~~~~~  100 (184)
T 4dvc_A           21 SSPVVSEFFSFYCPHCNTFEPIIAQLKQQLPEGAKFQKNHVSFMGGNMGQAMSKAYATMIALEVEDKMVPVMFNRIHTLR  100 (184)
T ss_dssp             SSCEEEEEECTTCHHHHHHHHHHHHHHHTSCTTCEEEEEECSSSSGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTSC
T ss_pred             CCCEEEEEECCCCHhHHHHhHHHHHHHhhcCCceEEEEEecCCCCCchHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHh
Confidence            46779999999999999999999999999986 666555431                                      


Q ss_pred             -------------------------------------CcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHHHH
Q 031271          116 -------------------------------------WLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQMKT  157 (162)
Q Consensus       116 -------------------------------------~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~~l  157 (162)
                                                           ....+++++|| .++||+++  |||.+-...+. +.+++.+.|
T Consensus       101 ~~~~~~~~l~~~a~~~Gld~~~~~~~~~s~~~~~~v~~~~~~a~~~gv-~gTPtfiI--NGky~v~~~~~~s~e~~~~~i  177 (184)
T 4dvc_A          101 KPPKDEQELRQIFLDEGIDAAKFDAAYNGFAVDSMVHRFDKQFQDSGL-TGVPAVVV--NNRYLVQGQSAKSLDEYFDLV  177 (184)
T ss_dssp             CCCSSHHHHHHHHHTTTCCHHHHHHHHTSHHHHHHHHHHHHHHHHHTC-CSSSEEEE--TTTEEECGGGCSSHHHHHHHH
T ss_pred             hccchHHHHHHHHHHhCCCHHHHHHHHhCHHHHHHHHHHHHHHHHcCC-CcCCEEEE--CCEEeeCCcCCCCHHHHHHHH
Confidence                                                 01136778999 99999987  89865444455 788999888


Q ss_pred             HHHh
Q 031271          158 EKRR  161 (162)
Q Consensus       158 ~~~~  161 (162)
                      +.++
T Consensus       178 ~~Ll  181 (184)
T 4dvc_A          178 NYLL  181 (184)
T ss_dssp             HHHT
T ss_pred             HHHH
Confidence            8765

>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0

Probab=98.76  E-value=2.5e-08  Score=66.06  Aligned_cols=57  Identities=25%  Similarity=0.266  Sum_probs=45.7

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHHHHHhc-----CCCCCccEEEEEcCCeEEE
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAF-----DLIDVLPTFVLVKRGKEID  143 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~l~~~~-----~i~~~~Ptiv~~~~Gk~i~  143 (162)
                      ++.|+++||++|+++.+.|++.     ++.|..+|++..+++...+     +. ..+|+++  .+|+.+.
T Consensus        18 v~vy~~~~Cp~C~~ak~~L~~~-----~i~y~~idI~~~~~~~~~l~~~~~g~-~~vP~if--i~g~~ig   79 (99)
T 3qmx_A           18 IEIYTWSTCPFCMRALALLKRK-----GVEFQEYCIDGDNEAREAMAARANGK-RSLPQIF--IDDQHIG   79 (99)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHH-----TCCCEEEECTTCHHHHHHHHHHTTTC-CCSCEEE--ETTEEEE
T ss_pred             EEEEEcCCChhHHHHHHHHHHC-----CCCCEEEEcCCCHHHHHHHHHHhCCC-CCCCEEE--ECCEEEe
Confidence            6779999999999999999886     5677888998887655444     88 9999874  4887663

>2l4c_A Endoplasmic reticulum resident protein 27; ERP27, PDI, B domain, peptide binding; NMR {Homo sapiens}

Probab=98.76  E-value=2.1e-07  Score=64.10  Aligned_cols=97  Identities=14%  Similarity=0.058  Sum_probs=76.4

Q ss_pred             CceeEeechhhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhhhhhhHHHHH
Q 031271           20 PLVMELQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYVKD   99 (162)
Q Consensus        20 ~~v~~i~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~~~l~~   99 (162)
                      +.+..|++.+++++.++.    +.++                                 ||-|+.+||++|   .+.|.+
T Consensus        21 ~~~~~i~s~~e~e~fi~~----~~v~---------------------------------VVGfF~~~~~~~---~~~F~~   60 (124)
T 2l4c_A           21 QEPTWLTDVPAAMEFIAA----TEVA---------------------------------VIGFFQDLEIPA---VPILHS   60 (124)
T ss_dssp             CCCEECCSHHHHHHHHHT----SSEE---------------------------------EEEECSCTTSTH---HHHHHH
T ss_pred             CcceEcCCHHHHHHHHhc----CCCE---------------------------------EEEEECCCCChh---HHHHHH
Confidence            445568888999988852    5666                                 899999999999   567999


Q ss_pred             HHHhcCCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCe-EEEEEcC-----CCHHHHHHHHHHHh
Q 031271          100 FAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGK-EIDRVVG-----AKKDELQMKTEKRR  161 (162)
Q Consensus       100 ~~~~~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk-~i~~~~g-----~~~~~l~~~l~~~~  161 (162)
                      +++.++++.|..++   +++++..|++ . .|++++|+++. ....+.|     .+.+.|.+||+.+.
T Consensus        61 ~A~~~~d~~F~~t~---~~~v~~~~~v-~-~~~vvlfkkfde~~~~~~g~~~~~~~~~~L~~FI~~n~  123 (124)
T 2l4c_A           61 MVQKFPGVSFGIST---DSEVLTHYNI-T-GNTICLFRLVDNEQLNLEDEDIESIDATKLSRFIEINS  123 (124)
T ss_dssp             HHHHCTTSEEEEEC---CHHHHHHTTC-C-SSCEEEEETTTTEEEEECHHHHTTCCHHHHHHHHHHHC
T ss_pred             HHHhCCCceEEEEC---hHHHHHHcCC-C-CCeEEEEEcCCCCceeecCcccCCCCHHHHHHHHHHhc
Confidence            99999779998764   4789999999 6 89999998652 3334554     49999999998763

>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae}

Probab=98.76  E-value=1.3e-08  Score=65.52  Aligned_cols=56  Identities=20%  Similarity=0.342  Sum_probs=46.5

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECC--CcHHHHHhc-CCCCCccEEEEEcCCeEE
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVD--WLPEAAKAF-DLIDVLPTFVLVKRGKEI  142 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d--~~~~l~~~~-~i~~~~Ptiv~~~~Gk~i  142 (162)
                      ++.|+++||++|+++.+.|++.     ++.|..+|++  ...++.+.+ ++ ..+|+++  .+|+.+
T Consensus         8 v~~y~~~~C~~C~~~~~~L~~~-----~i~~~~vdv~~~~~~~l~~~~~~~-~~vP~l~--~~g~~i   66 (89)
T 2klx_A            8 IILYTRPNCPYCKRARDLLDKK-----GVKYTDIDASTSLRQEMVQRANGR-NTFPQIF--IGDYHV   66 (89)
T ss_dssp             EEEESCSCCTTTHHHHHHHHHH-----TCCEEEECSCHHHHHHHHHHHHSS-CCSCEEE--ETTEEC
T ss_pred             EEEEECCCChhHHHHHHHHHHc-----CCCcEEEECCHHHHHHHHHHhCCC-CCcCEEE--ECCEEE
Confidence            6779999999999999999875     4677888888  556788889 99 9999985  388654

>4f9z_D Endoplasmic reticulum resident protein 27; thioredoxin fold, ER foldase, ERP57, binding protein; HET: PE3 PE4; 2.20A {Homo sapiens} PDB: 2l4c_A

Probab=98.75  E-value=3e-07  Score=69.12  Aligned_cols=83  Identities=13%  Similarity=0.143  Sum_probs=67.1

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCC-cEEEEEECCC--cHHHHHhcCCCC--CccEEEEEc-CCeEEEEEc-CC-CH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDW--LPEAAKAFDLID--VLPTFVLVK-RGKEIDRVV-GA-KK  150 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~-v~f~~vd~d~--~~~l~~~~~i~~--~~Ptiv~~~-~Gk~i~~~~-g~-~~  150 (162)
                      ++.|..+||..|..+.+.+.++++++++ +.|+.+|.+.  ...+++.||+ .  .+|+++++. .+....... +. +.
T Consensus       135 ~l~f~~~~~~~~~~~~~~~~~vAk~~k~~i~F~~vd~~~~~~~~~l~~fgl-~~~~~P~~~i~~~~~~~ky~~~~~~~t~  213 (227)
T 4f9z_D          135 LLLIMNKASPEYEENMHRYQKAAKLFQGKILFILVDSGMKENGKVISFFKL-KESQLPALAIYQTLDDEWDTLPTAEVSV  213 (227)
T ss_dssp             EEEEECTTSTTHHHHHHHHHHHHHHTTTTCEEEEEETTSGGGHHHHHHTTC-CGGGCSEEEEEESSSCCEEEETTCCCCH
T ss_pred             EEEEEcCCcchHHHHHHHHHHHHHHhhCCEEEEEeCCccHhHHHHHHHcCC-CcccCCEEEEEECCCCccccCCcCCCCH
Confidence            5667788999999999999999999987 9999999974  6678899999 7  899999985 232222232 44 89


Q ss_pred             HHHHHHHHHHhC
Q 031271          151 DELQMKTEKRRN  162 (162)
Q Consensus       151 ~~l~~~l~~~~~  162 (162)
                      +.|++|++.+++
T Consensus       214 ~~i~~Fv~~~~~  225 (227)
T 4f9z_D          214 EHVQNFCDGFLS  225 (227)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhC
Confidence            999999998753

>2ec4_A FAS-associated factor 1; UAS domain, protein FAF1, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.75  E-value=8.2e-08  Score=70.23  Aligned_cols=98  Identities=13%  Similarity=0.228  Sum_probs=76.0

Q ss_pred             hhHHHHHHhh----hcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhhhhhhHHH---HHHH
Q 031271           29 HQWRSQYEAS----KQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYV---KDFA  101 (162)
Q Consensus        29 ~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~~~l---~~~~  101 (162)
                      ..|+++++.|    ++..|++                                 +|+++++||..|..+...+   +++.
T Consensus        38 gs~~~Al~~A~~~~k~e~K~L---------------------------------lVyLhs~~~~~~~~f~~~~L~~~~V~   84 (178)
T 2ec4_A           38 GSLEAAFQEAFYVKARDRKLL---------------------------------AIYLHHDESVLTNVFCSQMLCAESIV   84 (178)
T ss_dssp             SCHHHHHHTTTSSCTTTCCEE---------------------------------EEEEECSSCSHHHHHHHHTTTCHHHH
T ss_pred             CCHHHHHHHHHhhhhhhCcEE---------------------------------EEEEeCCCCccHHHHHHHhcCCHHHH
Confidence            5688888888    7788888                                 9999999999999887544   4454


Q ss_pred             HhcC-CcEEEEEECCCcH---------------HHH---HhcCCCCCccEEEEE-cC---CeEEEEEcCC-CHHHHHHHH
Q 031271          102 AMYT-DVQFIKIDVDWLP---------------EAA---KAFDLIDVLPTFVLV-KR---GKEIDRVVGA-KKDELQMKT  157 (162)
Q Consensus       102 ~~~~-~v~f~~vd~d~~~---------------~l~---~~~~i~~~~Ptiv~~-~~---Gk~i~~~~g~-~~~~l~~~l  157 (162)
                      +-+. ++.+...|++...               .++   +.|++ ..+|+++++ +.   ++++.++.|. ++++|...|
T Consensus        85 ~~l~~nfV~w~~dv~~~e~~~~~~~~~~~~~g~~~a~~~~~~~~-~~~P~l~ii~~~~~~~~vl~~~~G~~~~~~ll~~L  163 (178)
T 2ec4_A           85 SYLSQNFITWAWDLTKDSNRARFLTMCNRHFGSVVAQTIRTQKT-DQFPLFLIIMGKRSSNEVLNVIQGNTTVDELMMRL  163 (178)
T ss_dssp             HHHHHTEEEEEEECCSHHHHHHHHHHHHHHTCHHHHHHHHHSCS-TTCSEEEEECCCSSCCCEEEEECSCCCHHHHHHHH
T ss_pred             HHHHcCEEEEEEeCCCchhhhhhhhhhhhhhHHHHHHHHhhcCC-CCCCeEEEEEcCCCceEEEEEEeCCCCHHHHHHHH
Confidence            4443 5888899998653               344   34899 999999988 33   3779999999 899988887


Q ss_pred             HHH
Q 031271          158 EKR  160 (162)
Q Consensus       158 ~~~  160 (162)
                      .+.
T Consensus       164 ~~~  166 (178)
T 2ec4_A          164 MAA  166 (178)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}

Probab=98.72  E-value=5.9e-08  Score=64.58  Aligned_cols=56  Identities=18%  Similarity=0.241  Sum_probs=44.6

Q ss_pred             EEEec-----CCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHH----HHHhcCCCCCccEEEEEcCCeEEE
Q 031271           80 IYYTA-----AWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPE----AAKAFDLIDVLPTFVLVKRGKEID  143 (162)
Q Consensus        80 v~F~a-----~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~----l~~~~~i~~~~Ptiv~~~~Gk~i~  143 (162)
                      +.|+.     +||++|+++.+.|++.     ++.|..+|++.+++    +...+|. ..+|+++  .+|+.+.
T Consensus        20 vvf~~g~~~~~~C~~C~~~~~~L~~~-----~i~~~~vdi~~~~~~~~~l~~~~g~-~~vP~v~--i~g~~ig   84 (105)
T 2yan_A           20 MLFMKGNKQEAKCGFSKQILEILNST-----GVEYETFDILEDEEVRQGLKAYSNW-PTYPQLY--VKGELVG   84 (105)
T ss_dssp             EEEESBCSSSBCTTHHHHHHHHHHHH-----TCCCEEEEGGGCHHHHHHHHHHHTC-CSSCEEE--ETTEEEE
T ss_pred             EEEEecCCCCCCCccHHHHHHHHHHC-----CCCeEEEECCCCHHHHHHHHHHHCC-CCCCeEE--ECCEEEe
Confidence            33666     9999999999999886     47788899988776    4556899 9999984  4887664

>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae}

Probab=98.72  E-value=4.4e-08  Score=69.49  Aligned_cols=77  Identities=21%  Similarity=0.285  Sum_probs=59.2

Q ss_pred             ceEEEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEEC-----------------------------------------
Q 031271           76 LKVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDV-----------------------------------------  114 (162)
Q Consensus        76 k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~-----------------------------------------  114 (162)
                      +.+|+.|+.++|++|+++.+.++++    +++.++....                                         
T Consensus        15 ~~~vv~f~D~~Cp~C~~~~~~l~~l----~~v~v~~~~~P~~~~~~~s~~~a~a~~ca~d~~~a~~~~~~~g~~~~~~~~   90 (147)
T 3gv1_A           15 KLKVAVFSDPDCPFCKRLEHEFEKM----TDVTVYSFMMPIAGLHPDAARKAQILWCQPDRAKAWTDWMRKGKFPVGGSI   90 (147)
T ss_dssp             CEEEEEEECTTCHHHHHHHHHHTTC----CSEEEEEEECCCTTTCTTHHHHHHHHHTSSSHHHHHHHHHHHCCCCTTCCC
T ss_pred             CEEEEEEECCCChhHHHHHHHHhhc----CceEEEEEEccccccChhHHHHHHHHHcCCCHHHHHHHHHhCCCCCCccHH
Confidence            4459999999999999999988654    5655554432                                         


Q ss_pred             -----CCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHHHHHHHh
Q 031271          115 -----DWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQMKTEKRR  161 (162)
Q Consensus       115 -----d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~~l~~~~  161 (162)
                           +++..+++++|| .++||+++ .||+.   +.|. +.+.|+++|++.+
T Consensus        91 ~~~~v~~~~~la~~~gI-~gtPt~vi-~nG~~---i~G~~~~~~l~~~i~~~~  138 (147)
T 3gv1_A           91 CDNPVAETTSLGEQFGF-NGTPTLVF-PNGRT---QSGYSPMPQLEEIIRKNQ  138 (147)
T ss_dssp             CSCSHHHHHHHHHHTTC-CSSCEEEC-TTSCE---EESCCCTTHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHHhCC-CccCEEEE-ECCEE---eeCCCCHHHHHHHHHHHH
Confidence                 013467889999 99999998 78874   5688 8999999998764

>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A

Probab=98.70  E-value=6.9e-08  Score=70.56  Aligned_cols=40  Identities=13%  Similarity=0.257  Sum_probs=33.5

Q ss_pred             CceEEEEEecCCChhhhhhhHHHHHHHHhcCC-cEEEEEEC
Q 031271           75 VLKVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDV  114 (162)
Q Consensus        75 ~k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~-v~f~~vd~  114 (162)
                      .+++|+.||..|||+|..+.|.+.++.+++++ +.|..+.+
T Consensus        22 ~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~~v~~~~~p~   62 (195)
T 2znm_A           22 GKIEVLEFFGYFCVHCHHFDPLLLKLGKALPSDAYLRTEHV   62 (195)
T ss_dssp             SSEEEEEEECTTSCCTTSSCHHHHHHHHHSCTTEEEEEEEC
T ss_pred             CCcEEEEEECCCChhHHHHhHHHHHHHHHCCCceEEEEecc
Confidence            35669999999999999999999999999875 66665553

>3feu_A Putative lipoprotein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Vibrio fischeri} SCOP: c.47.1.0

Probab=98.69  E-value=2.8e-08  Score=72.78  Aligned_cols=83  Identities=18%  Similarity=0.228  Sum_probs=64.4

Q ss_pred             CceEEEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECC-----------------C---------------------
Q 031271           75 VLKVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVD-----------------W---------------------  116 (162)
Q Consensus        75 ~k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d-----------------~---------------------  116 (162)
                      ++++||.|+..|||+|+++.|.++++.+++ ++.|..+.+.                 +                     
T Consensus        22 ~~~~vvef~d~~Cp~C~~~~~~~~~~~~~~-~v~~~~~p~~~~~~~~~aa~a~~Aa~~q~g~~~~~~~~~~lf~a~~~~~  100 (185)
T 3feu_A           22 GMAPVTEVFALSCGHCRNMENFLPVISQEA-GTDIGKMHITFNQSAHIASMFYYAAEMQVDGAPDHAFMEDLFAATQMGE  100 (185)
T ss_dssp             CCCSEEEEECTTCHHHHHHGGGHHHHHHHH-TSCCEEEECCSSSHHHHHHHHHHHHHTTSSSSCCHHHHHHHHHHHTCCT
T ss_pred             CCCEEEEEECCCChhHHHhhHHHHHHHHHh-CCeEEEEeccCCccchHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhc
Confidence            356699999999999999999999999988 7777666552                 0                     


Q ss_pred             ---c-------------------------------------HHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHH
Q 031271          117 ---L-------------------------------------PEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQM  155 (162)
Q Consensus       117 ---~-------------------------------------~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~  155 (162)
                         +                                     ..+++++|| .++|++++  ||+.+-...|. +.+.+.+
T Consensus       101 ~~~~~~~~~~L~~~a~~~Gl~d~~~~~~~~~~~~~~~v~~~~~~a~~~gv-~GtPtfvv--ng~~~v~~~Ga~~~e~~~~  177 (185)
T 3feu_A          101 GTTLTEQQEAYSKAFTSRGLVSPYDFNEEQRDTLIKKVDNAKMLSEKSGI-SSVPTFVV--NGKYNVLIGGHDDPKQIAD  177 (185)
T ss_dssp             TSCHHHHHHHHHHHHHTTTCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTC-CSSSEEEE--TTTEEECGGGCSSHHHHHH
T ss_pred             cCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CccCEEEE--CCEEEEecCCCCCHHHHHH
Confidence               0                                     013456778 99999987  88876444677 8899999


Q ss_pred             HHHHHh
Q 031271          156 KTEKRR  161 (162)
Q Consensus       156 ~l~~~~  161 (162)
                      .|+..+
T Consensus       178 ~i~~ll  183 (185)
T 3feu_A          178 TIRYLL  183 (185)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            988765

>3l9v_A Putative thiol-disulfide isomerase or thioredoxin; thioredoxin-fold, SRGA, thiol-disulfide oxidoreductase, ISOM oxidoreductase; HET: PE8 P4C P6G; 2.15A {Salmonella enterica subsp} SCOP: c.47.1.0

Probab=98.67  E-value=3.4e-08  Score=72.52  Aligned_cols=39  Identities=15%  Similarity=0.412  Sum_probs=33.7

Q ss_pred             ceEEEEEecCCChhhhhhhHHH---HHHHHhcCC-cEEEEEEC
Q 031271           76 LKVVIYYTAAWCGPCKFIEPYV---KDFAAMYTD-VQFIKIDV  114 (162)
Q Consensus        76 k~vvv~F~a~wC~~C~~~~~~l---~~~~~~~~~-v~f~~vd~  114 (162)
                      +++|+.|+..|||+|+++.|.+   +++.+.+++ +.|+.+++
T Consensus        15 ~~~vvef~d~~Cp~C~~~~~~~~~~~~~~~~~~~~v~~~~~~~   57 (189)
T 3l9v_A           15 APAVVEFFSFYCPPCYAFSQTMGVDQAIRHVLPQGSRMVKYHV   57 (189)
T ss_dssp             CCSEEEEECTTCHHHHHHHHTSCHHHHHHTTCCTTCCEEEEEC
T ss_pred             CCEEEEEECCCChhHHHHhHhccchHHHHHhCCCCCEEEEEec
Confidence            5669999999999999999986   788888885 88888776

>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A*

Probab=98.65  E-value=8.8e-08  Score=60.21  Aligned_cols=67  Identities=22%  Similarity=0.304  Sum_probs=49.6

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcH----HHHHhcCCCCCccEEEEEcCCeEEEEEcCCCHHHHH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLP----EAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQ  154 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~----~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~~~~~l~  154 (162)
                      ++.|+++||++|+++.+.|++.     ++.|..+|++..+    ++.+.+++ ..+|+++  .+|+.+.   |  .+.+.
T Consensus         3 i~~y~~~~C~~C~~~~~~l~~~-----~i~~~~~~i~~~~~~~~~~~~~~~~-~~vP~l~--~~g~~i~---g--~~~i~   69 (82)
T 1fov_A            3 VEIYTKETCPYCHRAKALLSSK-----GVSFQELPIDGNAAKREEMIKRSGR-TTVPQIF--IDAQHIG---G--YDDLY   69 (82)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHH-----TCCCEEEECTTCSHHHHHHHHHHSS-CCSCEEE--ETTEEEE---S--HHHHH
T ss_pred             EEEEECCCChhHHHHHHHHHHC-----CCCcEEEECCCCHHHHHHHHHHhCC-CCcCEEE--ECCEEEe---C--HHHHH
Confidence            5679999999999999999875     4667777887653    35678899 9999984  4887653   3  34455


Q ss_pred             HHHH
Q 031271          155 MKTE  158 (162)
Q Consensus       155 ~~l~  158 (162)
                      ++++
T Consensus        70 ~~~~   73 (82)
T 1fov_A           70 ALDA   73 (82)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5554

>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A*

Probab=98.64  E-value=6.9e-08  Score=64.94  Aligned_cols=57  Identities=26%  Similarity=0.581  Sum_probs=42.8

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCc----HH----HHHhcCCCCCccEEEEEcCCeEEE
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWL----PE----AAKAFDLIDVLPTFVLVKRGKEID  143 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~----~~----l~~~~~i~~~~Ptiv~~~~Gk~i~  143 (162)
                      ++.|+++||++|+++.+.|++.     ++.|..+|++..    ++    +.+.+|. ..+|++  |.+|+.+.
T Consensus        21 v~vy~~~~Cp~C~~~~~~L~~~-----~i~~~~~di~~~~~~~~~~~~~l~~~~g~-~tvP~i--fi~g~~ig   85 (113)
T 3rhb_A           21 VVIYSKTWCSYCTEVKTLFKRL-----GVQPLVVELDQLGPQGPQLQKVLERLTGQ-HTVPNV--FVCGKHIG   85 (113)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT-----TCCCEEEEGGGSTTHHHHHHHHHHHHHSC-CSSCEE--EETTEEEE
T ss_pred             EEEEECCCChhHHHHHHHHHHc-----CCCCeEEEeecCCCChHHHHHHHHHHhCC-CCcCEE--EECCEEEc
Confidence            4669999999999999999875     455566666642    33    5556799 999998  45887764

>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa}

Probab=98.64  E-value=3e-07  Score=66.92  Aligned_cols=39  Identities=15%  Similarity=0.261  Sum_probs=32.5

Q ss_pred             ceEEEEEecCCChhhhhhhHHHHHHHHhcCC-cEEEEEEC
Q 031271           76 LKVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDV  114 (162)
Q Consensus        76 k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~-v~f~~vd~  114 (162)
                      +++|+.|+..|||+|..+.+.+.++.+++++ +.|..+.+
T Consensus        26 ~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~~v~~~~~p~   65 (193)
T 2rem_A           26 KIEVVEIFGYTCPHCAHFDSKLQAWGARQAKDVRFTLVPA   65 (193)
T ss_dssp             CEEEEEEECTTCHHHHHHHHHHHHHHHTSCTTEEEEEEEC
T ss_pred             CeEEEEEECCCChhHhhhhHHHHHHHHhcCCceEEEEeCc
Confidence            4459999999999999999999999999875 66665543

>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis}

Probab=98.63  E-value=1.2e-07  Score=61.14  Aligned_cols=57  Identities=21%  Similarity=0.327  Sum_probs=45.1

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHH----HHHhcCCCCCccEEEEEcCCeEEE
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPE----AAKAFDLIDVLPTFVLVKRGKEID  143 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~----l~~~~~i~~~~Ptiv~~~~Gk~i~  143 (162)
                      ++.|+++||++|+++.+.|++.     ++.|..+|++.++.    +.+.+++ ..+|++  +.+|+.+.
T Consensus         8 v~ly~~~~C~~C~~~~~~L~~~-----~i~~~~~di~~~~~~~~~l~~~~~~-~~vP~l--~~~g~~i~   68 (92)
T 2khp_A            8 VIIYTRPGCPYCARAKALLARK-----GAEFNEIDASATPELRAEMQERSGR-NTFPQI--FIGSVHVG   68 (92)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT-----TCCCEEEESTTSHHHHHHHHHHHTS-SCCCEE--EETTEEEE
T ss_pred             EEEEECCCChhHHHHHHHHHHc-----CCCcEEEECCCCHHHHHHHHHHhCC-CCcCEE--EECCEEEc
Confidence            6779999999999999988874     57788889887654    4458899 999975  34887553

>1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13

Probab=98.57  E-value=6.9e-07  Score=64.12  Aligned_cols=77  Identities=18%  Similarity=0.173  Sum_probs=58.0

Q ss_pred             ceEEEEEecCCChhhhhhhHHHHHHHHhc--CC-cEEEEEECCC------------------------------------
Q 031271           76 LKVVIYYTAAWCGPCKFIEPYVKDFAAMY--TD-VQFIKIDVDW------------------------------------  116 (162)
Q Consensus        76 k~vvv~F~a~wC~~C~~~~~~l~~~~~~~--~~-v~f~~vd~d~------------------------------------  116 (162)
                      +.+|+.|+..|||+|..+.+.+.++.++|  ++ +.++..+..-                                    
T Consensus        28 ~v~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lf~~~~~  107 (175)
T 1z6m_A           28 PVKMIEFINVRCPYCRKWFEESEELLAQSVKSGKVERIIKLFDKEKESLQRGNVMHHYIDYSAPEQALSALHKMFATQDE  107 (175)
T ss_dssp             SEEEEEEECTTCHHHHHHHHHHHHHHHHHHHTTSEEEEEEECCCCSTTTHHHHHHHTTCCTTCHHHHHHHHHHHHHTHHH
T ss_pred             CeEEEEEECCCCcchHHHHHHHHHHHHHHhhCCcEEEEEEeCCCCcccHHHHHHHHHHHHhcChHHHHHHHHHHHHcChh
Confidence            55699999999999999999999888888  54 6666544310                                    


Q ss_pred             ------------------------------cHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHHHHH
Q 031271          117 ------------------------------LPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQMKTE  158 (162)
Q Consensus       117 ------------------------------~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~~l~  158 (162)
                                                    +..+++.+|| .++||+++  ||+.   +.|. +.+.|++.|+
T Consensus       108 ~~~~~~~~l~~~a~~~~Gld~~~~~~~~~~~~~~a~~~gv-~gtPt~vv--ng~~---~~G~~~~~~l~~~i~  174 (175)
T 1z6m_A          108 WGNLTLEEVATYAEKNLGLKEQKDATLVSAVIAEANAAHI-QFVPTIII--GEYI---FDESVTEEELRGYIE  174 (175)
T ss_dssp             HTTSCHHHHHHHHHHTSCCCCCCCHHHHHHHHHHHHHHTC-CSSCEEEE--TTEE---ECTTCCHHHHHHHHT
T ss_pred             hccCCHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHcCC-CCcCeEEE--CCEE---ccCCCCHHHHHHHhc
Confidence                                          1123567889 99999776  8874   4676 8889988875

>3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae}

Probab=98.53  E-value=5.1e-07  Score=67.93  Aligned_cols=105  Identities=13%  Similarity=-0.008  Sum_probs=76.2

Q ss_pred             eccccceeEE---ecCCCeeeeeC---ceEEEEEe-cCCChhhhhhhHHHHHHHHhcC--CcEEEEEECCC---------
Q 031271           55 IYCINEMVLN---INDGGNVVFWV---LKVVIYYT-AAWCGPCKFIEPYVKDFAAMYT--DVQFIKIDVDW---------  116 (162)
Q Consensus        55 ~~~~~~~~~~---~~~~~~~~~~~---k~vvv~F~-a~wC~~C~~~~~~l~~~~~~~~--~v~f~~vd~d~---------  116 (162)
                      ...-|+|++.   +.+++.+..++   |.|||+|| +.||+.|....+.|.+...+|.  ++.++.|.+|.         
T Consensus        26 G~~APdF~l~a~~d~~~~~vsLsd~~GK~vVL~FyP~d~TpvCt~E~~~f~~~~~~f~~~g~~vigiS~Ds~~sh~aw~~  105 (216)
T 3sbc_A           26 QKQAPTFKKTAVVDGVFDEVSLDKYKGKYVVLAFIPLAFTFVSPTEIIAFSEAAKKFEEQGAQVLFASTDSEYSLLAWTN  105 (216)
T ss_dssp             TSBCCCCCEEEEETTEEEEECGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHT
T ss_pred             CCcCCCCCCcceECCCCcEEehHHhCCCeEEEEEEcCCCCCcCchhhhHHHHhHHhhccCCceEEEeecCchhhHHHHHH
Confidence            3446778765   44455666655   88999999 9999999999999999988885  58899888862         


Q ss_pred             -------------------cHHHHHhcCCCC----Cc--c-EEEEEcCCeEEEEE-----cCCCHHHHHHHHHHH
Q 031271          117 -------------------LPEAAKAFDLID----VL--P-TFVLVKRGKEIDRV-----VGAKKDELQMKTEKR  160 (162)
Q Consensus       117 -------------------~~~l~~~~~i~~----~~--P-tiv~~~~Gk~i~~~-----~g~~~~~l~~~l~~~  160 (162)
                                         ..++++.||+ .    ++  + +|++-++|++....     .|.+.+++.+.|+.+
T Consensus       106 ~~~~~~~~~~l~fpllsD~~~~vak~YGv-~~~~~g~~~R~tFiID~~G~Ir~~~v~~~~~grn~dEiLr~l~Al  179 (216)
T 3sbc_A          106 IPRKEGGLGPINIPLLADTNHSLSRDYGV-LIEEEGVALRGLFIIDPKGVIRHITINDLPVGRNVDEALRLVEAF  179 (216)
T ss_dssp             SCGGGTCCCSCSSCEEECTTSHHHHHHTC-EETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             HHHHhCCccCcccceEeCCCCHHHHHcCC-eeccCCceeeEEEEECCCCeEEEEEEcCCCCCCCHHHHHHHHHHh
Confidence                               2368889987 3    23  3 45555889876544     355788888777653

>1un2_A DSBA, thiol-disulfide interchange protein; disulfide oxidoreductase, oxidoreductase, protein disulfide isomerase, protein folding, thioredoxin; 2.4A {Escherichia coli} SCOP: c.47.1.13

Probab=98.52  E-value=3.8e-08  Score=73.00  Aligned_cols=43  Identities=16%  Similarity=0.364  Sum_probs=39.3

Q ss_pred             CceEEEEEecCCChhhhhhhHHH---HHHHHhcCC-cEEEEEECCCc
Q 031271           75 VLKVVIYYTAAWCGPCKFIEPYV---KDFAAMYTD-VQFIKIDVDWL  117 (162)
Q Consensus        75 ~k~vvv~F~a~wC~~C~~~~~~l---~~~~~~~~~-v~f~~vd~d~~  117 (162)
                      .+++||.||+.||++|+++.|.|   +++.+.+++ +.|.+++++.+
T Consensus       113 ~~~~vveFf~~~C~~C~~~~p~~~~~~~l~~~~~~~v~~~~~~v~~~  159 (197)
T 1un2_A          113 GAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHVNFM  159 (197)
T ss_dssp             TCCSEEEEECTTCHHHHHHHHTSCHHHHHTTSSCTTCCEEEEECSSS
T ss_pred             CCCEEEEEECCCChhHHHhCcccccHHHHHHHCCCCCEEEEeccCcC
Confidence            46789999999999999999999   999999985 99999999865

>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0

Probab=98.49  E-value=5e-07  Score=61.00  Aligned_cols=57  Identities=9%  Similarity=0.267  Sum_probs=43.7

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCC--c-----HHHHHhcCCCCCccEEEEEcCCeEEE
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDW--L-----PEAAKAFDLIDVLPTFVLVKRGKEID  143 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~--~-----~~l~~~~~i~~~~Ptiv~~~~Gk~i~  143 (162)
                      ++.|+.+|||+|+++.+.|++.     ++.|-.+|++.  .     ..+.+..|. ..+|++++  +|+.+.
T Consensus        19 v~vy~~~~Cp~C~~ak~~L~~~-----~i~~~~~dvd~~~~~~~~~~~l~~~~g~-~tvP~vfi--~g~~ig   82 (114)
T 3h8q_A           19 VVIFSKSYCPHSTRVKELFSSL-----GVECNVLELDQVDDGARVQEVLSEITNQ-KTVPNIFV--NKVHVG   82 (114)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT-----TCCCEEEETTTSTTHHHHHHHHHHHHSC-CSSCEEEE--TTEEEE
T ss_pred             EEEEEcCCCCcHHHHHHHHHHc-----CCCcEEEEecCCCChHHHHHHHHHHhCC-CccCEEEE--CCEEEe
Confidence            4569999999999999999875     45566777764  2     235677899 99999865  887664

>3ctg_A Glutaredoxin-2; reduced form, electron transport, mitochondrion, redox-activ transit peptide, transport, oxidoreductase; 1.50A {Saccharomyces cerevisiae} PDB: 3ctf_A 3d4m_A 3d5j_A*

Probab=98.46  E-value=1.4e-07  Score=65.39  Aligned_cols=60  Identities=15%  Similarity=0.307  Sum_probs=43.9

Q ss_pred             EEEEecCCChhhhhh-hHHHHHHHHhcCCcEEEEEECCCc-------HHHHHhcCCCCCccEEEEEcCCeEEE
Q 031271           79 VIYYTAAWCGPCKFI-EPYVKDFAAMYTDVQFIKIDVDWL-------PEAAKAFDLIDVLPTFVLVKRGKEID  143 (162)
Q Consensus        79 vv~F~a~wC~~C~~~-~~~l~~~~~~~~~v~f~~vd~d~~-------~~l~~~~~i~~~~Ptiv~~~~Gk~i~  143 (162)
                      ++.|+.+||++|+++ .+.|++....  .+.+..+|++..       .++.+.+|. ..+|++  |.+|+.+.
T Consensus        39 Vvvy~~~~Cp~C~~a~k~~L~~~~~~--~i~~~~vdvd~~~~~~~~~~~L~~~~g~-~tVP~v--fi~g~~ig  106 (129)
T 3ctg_A           39 VFVAAKTYCPYCKATLSTLFQELNVP--KSKALVLELDEMSNGSEIQDALEEISGQ-KTVPNV--YINGKHIG  106 (129)
T ss_dssp             EEEEECTTCHHHHHHHHHHHTTSCCC--GGGEEEEEGGGSTTHHHHHHHHHHHHSC-CSSCEE--EETTEEEE
T ss_pred             EEEEECCCCCchHHHHHHHHHhcCcc--CCCcEEEEccccCCHHHHHHHHHHHhCC-CCCCEE--EECCEEEc
Confidence            577999999999999 8888765321  255556666543       367888999 999996  45887663

>3tue_A Tryparedoxin peroxidase; thioredoxin fold, peroxiredoxin, oxidoreductase; 3.00A {Leishmania major} PDB: 1e2y_A

Probab=98.41  E-value=1.2e-06  Score=65.95  Aligned_cols=107  Identities=11%  Similarity=0.100  Sum_probs=77.4

Q ss_pred             eeccccceeE----EecCCCeeeeeC---ceEEEEEe-cCCChhhhhhhHHHHHHHHhcC--CcEEEEEECCC-------
Q 031271           54 LIYCINEMVL----NINDGGNVVFWV---LKVVIYYT-AAWCGPCKFIEPYVKDFAAMYT--DVQFIKIDVDW-------  116 (162)
Q Consensus        54 ~~~~~~~~~~----~~~~~~~~~~~~---k~vvv~F~-a~wC~~C~~~~~~l~~~~~~~~--~v~f~~vd~d~-------  116 (162)
                      ....-|+|++    .+.+|+.+..++   |.|||+|| +.||+.|......|.+...+|.  ++.++.|.+|.       
T Consensus        28 vG~~APdF~~~a~l~d~~g~~vsLsd~~GK~vVL~FyP~d~TpvCt~E~~~f~~~~~eF~~~g~~vigiS~Ds~~sh~~w  107 (219)
T 3tue_A           28 INSPAPSFEEVALMPNGSFKKISLSSYKGKWVVLFFYPLDFTFVCPTEVIAFSDSVSRFNELNCEVLACSIDSEYAHLQW  107 (219)
T ss_dssp             TTSBCCCCEEEEECTTSCEEEEEGGGGTTSEEEEEECSCTTCSSCCHHHHHHHTTHHHHHTTTEEEEEEESSCHHHHHHH
T ss_pred             cCCcCCCCcccccccCCCCcEEehHHhCCCEEEEEEecccCCCCCchhHhhHHHHHhhhccCCcEEEEeeCCchhhHHHH
Confidence            3445677874    355667777666   88999999 8999999999999988888885  48888888863       


Q ss_pred             ---------------------cHHHHHhcCC---CCCcc---EEEEEcCCeEEEEEc-----CCCHHHHHHHHHHH
Q 031271          117 ---------------------LPEAAKAFDL---IDVLP---TFVLVKRGKEIDRVV-----GAKKDELQMKTEKR  160 (162)
Q Consensus       117 ---------------------~~~l~~~~~i---~~~~P---tiv~~~~Gk~i~~~~-----g~~~~~l~~~l~~~  160 (162)
                                           ..++++.||+   ..+++   +|++-++|++.....     |.+.+++.+.|+.+
T Consensus       108 ~~~~~~~~~~~~l~fpllsD~~~~va~~yGv~~~~~g~~~R~tFiIDp~g~Ir~~~~~~~~~gr~~~EvLr~l~aL  183 (219)
T 3tue_A          108 TLQDRKKGGLGTMAIPILADKTKNIARSYGVLEESQGVAYRGLFIIDPHGMLRQITVNDMPVGRSVEEVLRLLEAF  183 (219)
T ss_dssp             HHSCGGGTCCCSCSSCEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHH
T ss_pred             hhhhHHhcCccccccccccCcccHHHHHcCCcccCCCeeEEEEEEECCCCeEEEEEEecCCCCCCHHHHHHHHHHh
Confidence                                 2368889987   12344   455558897766542     44678887777653

>3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A*

Probab=98.39  E-value=1.1e-06  Score=55.74  Aligned_cols=71  Identities=18%  Similarity=0.272  Sum_probs=47.3

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCc----HHHHHhcC-----CCCCccEEEEEcCCeEEEEEcCCC
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWL----PEAAKAFD-----LIDVLPTFVLVKRGKEIDRVVGAK  149 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~----~~l~~~~~-----i~~~~Ptiv~~~~Gk~i~~~~g~~  149 (162)
                      ++.|+++||++|+++...|++..-   .+.++.+|.+..    .++.+.+|     + ..+|++++  +|+.+.   |  
T Consensus         6 v~ly~~~~Cp~C~~~~~~L~~~~i---~~~~~~vd~~~~~~~~~el~~~~g~~~~~~-~~vP~i~i--~g~~i~---g--   74 (89)
T 3msz_A            6 VKIYTRNGCPYCVWAKQWFEENNI---AFDETIIDDYAQRSKFYDEMNQSGKVIFPI-STVPQIFI--DDEHIG---G--   74 (89)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHTTC---CCEEEECCSHHHHHHHHHHHHTTTCCSSCC-CSSCEEEE--TTEEEE---S--
T ss_pred             EEEEEcCCChhHHHHHHHHHHcCC---CceEEEeecCCChhHHHHHHHHhCCCCCCC-CccCEEEE--CCEEEe---C--
Confidence            678999999999999988877531   255556666544    34555554     3 68999865  887663   3  


Q ss_pred             HHHHHHHHHHH
Q 031271          150 KDELQMKTEKR  160 (162)
Q Consensus       150 ~~~l~~~l~~~  160 (162)
                      .+.+.+++++.
T Consensus        75 ~~~i~~~~~~~   85 (89)
T 3msz_A           75 FTELKANADKI   85 (89)
T ss_dssp             HHHHHHTHHHH
T ss_pred             hHHHHHHHHHH
Confidence            44555555544

>3l9s_A Thiol:disulfide interchange protein; thioredoxin-fold, DSBA, thiol-disulfide oxidoreductase, DISU bond, redox-active center; 1.58A {Salmonella enterica subsp} SCOP: c.47.1.13 PDB: 1a23_A 1a24_A 1a2j_A 1a2l_A 1a2m_A 1dsb_A 1fvk_A 3dks_A 1bq7_A 1fvj_A 1acv_A 1u3a_A* 1ti1_A* 2hi7_A* 2leg_A* 2zup_A* 3e9j_B* 1ac1_A 2b6m_A 2b3s_A

Probab=98.38  E-value=4.4e-07  Score=66.77  Aligned_cols=39  Identities=15%  Similarity=0.318  Sum_probs=33.4

Q ss_pred             ceEEEEEecCCChhhhhhhHHH---HHHHHhcCC-cEEEEEEC
Q 031271           76 LKVVIYYTAAWCGPCKFIEPYV---KDFAAMYTD-VQFIKIDV  114 (162)
Q Consensus        76 k~vvv~F~a~wC~~C~~~~~~l---~~~~~~~~~-v~f~~vd~  114 (162)
                      +++|+.|+..|||+|.++.|.+   +++.+.+++ +.|..++.
T Consensus        22 ~~~vvef~d~~Cp~C~~~~~~l~~~~~l~~~~~~~v~~~~~~~   64 (191)
T 3l9s_A           22 EPQVLEFFSFYCPHCYQFEEVLHVSDNVKKKLPEGTKMTKYHV   64 (191)
T ss_dssp             SSCEEEEECTTCHHHHHHHHTSCHHHHHHHHSCTTCCEEEEEC
T ss_pred             CCeEEEEECCCChhHHHhChhccchHHHHHhCCCCcEEEEEec
Confidence            6679999999999999999987   799999985 77776665

>4f9z_D Endoplasmic reticulum resident protein 27; thioredoxin fold, ER foldase, ERP57, binding protein; HET: PE3 PE4; 2.20A {Homo sapiens} PDB: 2l4c_A

Probab=98.32  E-value=6.7e-06  Score=61.64  Aligned_cols=96  Identities=13%  Similarity=0.025  Sum_probs=74.7

Q ss_pred             ceeEeechhhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhhhhhhHHHHHH
Q 031271           21 LVMELQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYVKDF  100 (162)
Q Consensus        21 ~v~~i~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~~~l~~~  100 (162)
                      .+..+++.+++++.++.    ++.+                                 +|-|+++||   ..+.+.|.++
T Consensus        10 ~~~~l~s~~~~~~~l~~----~~v~---------------------------------vVgff~~~~---~~~~~~f~~~   49 (227)
T 4f9z_D           10 EPTWLTDVPAAMEFIAA----TEVA---------------------------------VIGFFQDLE---IPAVPILHSM   49 (227)
T ss_dssp             CCEECCSHHHHHHHHHT----SSEE---------------------------------EEEECSCSC---STHHHHHHHH
T ss_pred             CCeeeCCHHHHHHHHhc----CCeE---------------------------------EEEEecCCC---chhHHHHHHH
Confidence            46688888999988753    5666                                 899999985   6788899999


Q ss_pred             HHhcCCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCC--eEEEEEc----CCCHHHHHHHHHHHh
Q 031271          101 AAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRG--KEIDRVV----GAKKDELQMKTEKRR  161 (162)
Q Consensus       101 ~~~~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~G--k~i~~~~----g~~~~~l~~~l~~~~  161 (162)
                      ++.++++.|...   .+.+++.+|++ .. |++++|+++  +......    +.+.+.|.+||+.+.
T Consensus        50 A~~l~~~~F~~t---~~~~v~~~~~v-~~-p~i~lfk~~~~~~~~~~~~~~g~~~~~~l~~fi~~~~  111 (227)
T 4f9z_D           50 VQKFPGVSFGIS---TDSEVLTHYNI-TG-NTICLFRLVDNEQLNLEDEDIESIDATKLSRFIEINS  111 (227)
T ss_dssp             TTTCTTSEEEEE---CCHHHHHHTTC-CS-SEEEEEETTTTEEEEECHHHHHTCCHHHHHHHHHHHC
T ss_pred             HHhCCCceEEEE---CCHHHHHHcCC-CC-CeEEEEEecCcccccccccccCCCCHHHHHHHHHHhC
Confidence            999977888763   46789999999 77 999999753  3333332    358999999998763

>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=98.25  E-value=2.9e-06  Score=56.65  Aligned_cols=56  Identities=20%  Similarity=0.251  Sum_probs=43.9

Q ss_pred             EEEec-----CCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHH----HHHhcCCCCCccEEEEEcCCeEEE
Q 031271           80 IYYTA-----AWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPE----AAKAFDLIDVLPTFVLVKRGKEID  143 (162)
Q Consensus        80 v~F~a-----~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~----l~~~~~i~~~~Ptiv~~~~Gk~i~  143 (162)
                      +.|+.     +||++|+++.+.|++.     ++.|..+|++.+++    +...+|. ..+|++  |.+|+.+.
T Consensus        18 vvy~~g~~~~~~Cp~C~~ak~~L~~~-----~i~~~~vdi~~~~~~~~~l~~~~g~-~~vP~i--fi~g~~ig   82 (109)
T 1wik_A           18 MLFMKGNKQEAKCGFSKQILEILNST-----GVEYETFDILEDEEVRQGLKTFSNW-PTYPQL--YVRGDLVG   82 (109)
T ss_dssp             EEEESSTTTCCCSSTHHHHHHHHHHT-----CSCEEEEESSSCHHHHHHHHHHHSC-CSSCEE--ECSSSEEE
T ss_pred             EEEEecCCCCCCCchHHHHHHHHHHc-----CCCeEEEECCCCHHHHHHHHHHhCC-CCCCEE--EECCEEEc
Confidence            44666     9999999999999774     68899999998765    4556788 999985  56887653

>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A

Probab=98.23  E-value=2.4e-06  Score=59.70  Aligned_cols=50  Identities=16%  Similarity=0.222  Sum_probs=38.8

Q ss_pred             CCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHHH----HHhcCCCCCccEEEEEcCCeEE
Q 031271           85 AWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEA----AKAFDLIDVLPTFVLVKRGKEI  142 (162)
Q Consensus        85 ~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~l----~~~~~i~~~~Ptiv~~~~Gk~i  142 (162)
                      +||++|+++...|.+.     ++.|..+|++.++++    .+..|. ..+|.++  .+|+.+
T Consensus        48 ~~Cp~C~~ak~~L~~~-----gv~y~~vdI~~d~~~~~~L~~~~G~-~tvP~Vf--I~G~~i  101 (135)
T 2wci_A           48 PSCGFSAQAVQALAAC-----GERFAYVDILQNPDIRAELPKYANW-PTFPQLW--VDGELV  101 (135)
T ss_dssp             BSSHHHHHHHHHHHTT-----CSCCEEEEGGGCHHHHHHHHHHHTC-CSSCEEE--ETTEEE
T ss_pred             CCCccHHHHHHHHHHc-----CCceEEEECCCCHHHHHHHHHHHCC-CCcCEEE--ECCEEE
Confidence            8999999999888764     677888898876654    445688 8999864  488765

>3l4n_A Monothiol glutaredoxin-6; C-terminal domain of GRX6, oxidoreductase; HET: GSH; 1.50A {Saccharomyces cerevisiae}

Probab=98.05  E-value=6.5e-06  Score=56.85  Aligned_cols=61  Identities=11%  Similarity=0.182  Sum_probs=40.5

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcH-----HHHHhcCCCCCccEEEEEcCCeEE
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLP-----EAAKAFDLIDVLPTFVLVKRGKEI  142 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~-----~l~~~~~i~~~~Ptiv~~~~Gk~i  142 (162)
                      |+.|+.+|||+|.++...|.+....-..+..+.||.+.++     .+.+..|. ..+|++++  +|+.+
T Consensus        16 Vvvysk~~Cp~C~~ak~lL~~~~~~~v~~~~idid~~~d~~~~~~~l~~~~G~-~tVP~IfI--~G~~I   81 (127)
T 3l4n_A           16 IIIFSKSTCSYSKGMKELLENEYQFIPNYYIIELDKHGHGEELQEYIKLVTGR-GTVPNLLV--NGVSR   81 (127)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHEEEESCCEEEEGGGSTTHHHHHHHHHHHHSC-CSSCEEEE--TTEEC
T ss_pred             EEEEEcCCCccHHHHHHHHHHhcccCCCcEEEEecCCCCHHHHHHHHHHHcCC-CCcceEEE--CCEEE
Confidence            5779999999999999998874211123444455544332     23445688 99999855  88654

>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}

Probab=98.05  E-value=1.5e-05  Score=53.56  Aligned_cols=57  Identities=18%  Similarity=0.284  Sum_probs=43.0

Q ss_pred             EEEEec-----CCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHHHH----HhcCCCCCccEEEEEcCCeEEE
Q 031271           79 VIYYTA-----AWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAA----KAFDLIDVLPTFVLVKRGKEID  143 (162)
Q Consensus        79 vv~F~a-----~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~l~----~~~~i~~~~Ptiv~~~~Gk~i~  143 (162)
                      |+.|..     +||++|+++...|.+.     ++.|..+|++.++++.    +..|. ..+|.+++  +|+.+.
T Consensus        18 Vvlf~kg~~~~~~Cp~C~~ak~~L~~~-----gi~y~~~di~~d~~~~~~l~~~~g~-~tvP~ifi--~g~~iG   83 (111)
T 3zyw_A           18 CMLFMKGTPQEPRCGFSKQMVEILHKH-----NIQFSSFDIFSDEEVRQGLKAYSSW-PTYPQLYV--SGELIG   83 (111)
T ss_dssp             EEEEESBCSSSBSSHHHHHHHHHHHHT-----TCCCEEEEGGGCHHHHHHHHHHHTC-CSSCEEEE--TTEEEE
T ss_pred             EEEEEecCCCCCcchhHHHHHHHHHHc-----CCCeEEEECcCCHHHHHHHHHHHCC-CCCCEEEE--CCEEEe
Confidence            456777     9999999999888764     5677788888766543    34578 89999854  887653

>2axo_A Hypothetical protein ATU2684; alpha beta protein., structural genomics, PSI, protein struc initiative; 1.80A {Agrobacterium tumefaciens str} SCOP: c.47.1.19

Probab=98.04  E-value=5.5e-05  Score=58.56  Aligned_cols=77  Identities=21%  Similarity=0.307  Sum_probs=57.3

Q ss_pred             EEEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCC------------------cHHHHHhcCCCCCc--cEEEEEc
Q 031271           78 VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDW------------------LPEAAKAFDLIDVL--PTFVLVK  137 (162)
Q Consensus        78 vvv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~------------------~~~l~~~~~i~~~~--Ptiv~~~  137 (162)
                      .|..|+.++|++|......|++++..+ ++..+.++++.                  ...+.+++|. ..+  |++++  
T Consensus        45 ~VelyTs~gCp~C~~Ak~lL~~~~~~~-~vi~l~~~v~~~dylgw~D~~a~~~~~~r~~~~~~~~G~-~tVyTPqI~I--  120 (270)
T 2axo_A           45 VVELFTSQGCASCPPADEALRKMIQKG-DVVGLSYHVDYWNYLGWTDSLASKENTERQYGYMRALGR-NGVYTPQAIL--  120 (270)
T ss_dssp             EEEEEECTTCTTCHHHHHHHHHHHHHT-SSEEEEEECSTTCSSSSCCTTCCHHHHHHHHHHHHHTTC-SCCCSSEEEE--
T ss_pred             EEEEEeCCCCCChHHHHHHHHHhhccC-CeeeEEEEEEEecccccccchhhhhhhHHHHHHHHHhCC-CcccCCEEEE--
Confidence            478899999999999999999998765 55433444331                  2347788999 888  99876  


Q ss_pred             CCeEEEEEcCCCHHHHHHHHHHH
Q 031271          138 RGKEIDRVVGAKKDELQMKTEKR  160 (162)
Q Consensus       138 ~Gk~i~~~~g~~~~~l~~~l~~~  160 (162)
                      ||+..  +.|.+++.|++.|.+.
T Consensus       121 ng~~~--v~G~d~~~l~~~l~~~  141 (270)
T 2axo_A          121 NGRDH--VKGADVRGIYDRLDAF  141 (270)
T ss_dssp             TTTEE--EETTCHHHHHHHHHHH
T ss_pred             CCEEe--ecCCCHHHHHHHHHHh
Confidence            77742  4588888998888754

>4f82_A Thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.85A {Burkholderia cenocepacia}

Probab=98.02  E-value=1.9e-05  Score=57.46  Aligned_cols=69  Identities=16%  Similarity=0.162  Sum_probs=51.7

Q ss_pred             EEEEecCCChhhhh-hhHHHHHHHHhcC--Cc-EEEEEECCC-----------------------cHHHHHhcCCCC---
Q 031271           79 VIYYTAAWCGPCKF-IEPYVKDFAAMYT--DV-QFIKIDVDW-----------------------LPEAAKAFDLID---  128 (162)
Q Consensus        79 vv~F~a~wC~~C~~-~~~~l~~~~~~~~--~v-~f~~vd~d~-----------------------~~~l~~~~~i~~---  128 (162)
                      |++|++.||+.|.. ..+.|.+..++|.  ++ .++.|..|.                       +.++++.||+ .   
T Consensus        52 L~fyP~~~tp~Ct~~El~~f~~~~~ef~~~g~d~VigIS~D~~~~~~~f~~~~~l~~~f~lLsD~~~~va~ayGv-~~~~  130 (176)
T 4f82_A           52 IFGLPGAFTPTCSAQHVPGYVEHAEQLRAAGIDEIWCVSVNDAFVMGAWGRDLHTAGKVRMMADGSAAFTHALGL-TQDL  130 (176)
T ss_dssp             EEEESCTTCHHHHHTHHHHHHHHHHHHHHTTCCEEEEEESSCHHHHHHHHHHTTCTTTSEEEECTTCHHHHHHTC-EEEC
T ss_pred             EEEEcCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHHHhCCCCCceEEEcCchHHHHHhCC-Cccc
Confidence            66778999999999 9999998888874  57 888888762                       2367888887 3   


Q ss_pred             --------CccEEEEEcCCeEEEEEcCC
Q 031271          129 --------VLPTFVLVKRGKEIDRVVGA  148 (162)
Q Consensus       129 --------~~Ptiv~~~~Gk~i~~~~g~  148 (162)
                              ..|..+++++|++.....+.
T Consensus       131 ~~~G~g~~s~R~tfII~dG~I~~~~~~~  158 (176)
T 4f82_A          131 SARGMGIRSLRYAMVIDGGVVKTLAVEA  158 (176)
T ss_dssp             GGGTCCEEECCEEEEEETTEEEEEEECC
T ss_pred             cccCCCcccccEEEEEcCCEEEEEEEcC
Confidence                    13644444999998877644

>3gha_A Disulfide bond formation protein D; BDBD, DSBA-like, TRX-like, oxidoreductase, competence, redox-active center; 1.40A {Bacillus subtilis} PDB: 3eu4_A 3gh9_A 3eu3_A

Probab=98.01  E-value=4.4e-05  Score=56.40  Aligned_cols=39  Identities=21%  Similarity=0.407  Sum_probs=31.2

Q ss_pred             ceEEEEEecCCChhhhhhhHHH-HHHHHhcC---CcEEEEEEC
Q 031271           76 LKVVIYYTAAWCGPCKFIEPYV-KDFAAMYT---DVQFIKIDV  114 (162)
Q Consensus        76 k~vvv~F~a~wC~~C~~~~~~l-~~~~~~~~---~v~f~~vd~  114 (162)
                      +++|+.|+...||+|+++.+.+ ..+.+.|.   ++.|+..+.
T Consensus        30 ~vtvvef~D~~CP~C~~~~~~~~~~l~~~~~~~g~v~~~~~~~   72 (202)
T 3gha_A           30 PVTVVEFGDYKCPSCKVFNSDIFPKIQKDFIDKGDVKFSFVNV   72 (202)
T ss_dssp             SEEEEEEECTTCHHHHHHHHHTHHHHHHHTTTTTSEEEEEEEC
T ss_pred             CEEEEEEECCCChhHHHHHHHhhHHHHHHhccCCeEEEEEEec
Confidence            5669999999999999999876 67777774   377777665

>2h8l_A Protein disulfide-isomerase A3; thioredoxin-like fold; 2.00A {Homo sapiens}

Probab=97.94  E-value=0.00011  Score=55.66  Aligned_cols=97  Identities=7%  Similarity=0.115  Sum_probs=72.5

Q ss_pred             CCceeEeechhhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhhhhhhHHHH
Q 031271           19 TPLVMELQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYVK   98 (162)
Q Consensus        19 ~~~v~~i~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~~~l~   98 (162)
                      .+.+..+++.++++..++.    +..+                                 +|-|+.+||   ....+.|.
T Consensus         5 gP~v~~l~s~~~~~~~l~~----~~v~---------------------------------vvgff~~~~---~~~~~~f~   44 (252)
T 2h8l_A            5 SPASVPLRTEEEFKKFISD----KDAS---------------------------------IVGFFDDSF---SEAHSEFL   44 (252)
T ss_dssp             -CCEEECCSHHHHHHHHTS----SSCE---------------------------------EEEEESCTT---SHHHHHHH
T ss_pred             CCCceeecCHHHHHHHhhc----CCeE---------------------------------EEEEECCCC---ChHHHHHH
Confidence            3558889998888888753    4455                                 788888884   44567899


Q ss_pred             HHHHhcC-CcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCC--------eEEEEE-cCC-CHHHHHHHHHHHh
Q 031271           99 DFAAMYT-DVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRG--------KEIDRV-VGA-KKDELQMKTEKRR  161 (162)
Q Consensus        99 ~~~~~~~-~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~G--------k~i~~~-~g~-~~~~l~~~l~~~~  161 (162)
                      +++..+. ++.|+.+   .+.+++.+|++ .. |++++|+.+        ..+ .+ .|. +.+.|.+||..+.
T Consensus        45 ~~A~~lr~~~~F~~~---~~~~v~~~~~~-~~-p~i~~fk~~~~~~kf~e~~~-~y~~g~~~~~~l~~fi~~~~  112 (252)
T 2h8l_A           45 KAASNLRDNYRFAHT---NVESLVNEYDD-NG-EGIILFRPSHLTNKFEDKTV-AYTEQKMTSGKIKKFIQENI  112 (252)
T ss_dssp             HHHHHTTTTSCEEEE---CCHHHHHHHCS-SS-EEEEEECCGGGCCTTSCSEE-ECCCSSCCHHHHHHHHHHHS
T ss_pred             HHHHhcccCcEEEEE---ChHHHHHHhCC-CC-CcEEEEcchhhccccccccc-ccCCCCcCHHHHHHHHHhcc
Confidence            9999984 5888876   35779999999 76 999999742        333 34 455 8999999998763

>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A

Probab=97.94  E-value=4.1e-05  Score=51.11  Aligned_cols=51  Identities=14%  Similarity=0.259  Sum_probs=38.4

Q ss_pred             CCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHHH----HHhcCCCCCccEEEEEcCCeEEE
Q 031271           85 AWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEA----AKAFDLIDVLPTFVLVKRGKEID  143 (162)
Q Consensus        85 ~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~l----~~~~~i~~~~Ptiv~~~~Gk~i~  143 (162)
                      |||++|+++...|.+.     ++.|-.+|++..+++    .+..|. ..+|.+++  ||+.+.
T Consensus        31 p~Cp~C~~ak~~L~~~-----gi~~~~~dI~~~~~~~~~l~~~~g~-~tvP~ifi--~g~~iG   85 (109)
T 3ipz_A           31 PMCGFSNTVVQILKNL-----NVPFEDVNILENEMLRQGLKEYSNW-PTFPQLYI--GGEFFG   85 (109)
T ss_dssp             BSSHHHHHHHHHHHHT-----TCCCEEEEGGGCHHHHHHHHHHHTC-SSSCEEEE--TTEEEE
T ss_pred             CCChhHHHHHHHHHHc-----CCCcEEEECCCCHHHHHHHHHHHCC-CCCCeEEE--CCEEEe
Confidence            4999999999998874     567778888766554    344588 89997644  887664

>1xiy_A Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin fold, peroxiredoxin fold, oxidoreductase; 1.80A {Plasmodium falciparum} SCOP: c.47.1.10

Probab=97.91  E-value=7.9e-05  Score=54.39  Aligned_cols=102  Identities=8%  Similarity=0.069  Sum_probs=67.5

Q ss_pred             cccceeEEe--c---------CC----Ceeee----eCceEEEEEe-cCCChhhh-hhhHHHHHHHHhc---CCc-EEEE
Q 031271           57 CINEMVLNI--N---------DG----GNVVF----WVLKVVIYYT-AAWCGPCK-FIEPYVKDFAAMY---TDV-QFIK  111 (162)
Q Consensus        57 ~~~~~~~~~--~---------~~----~~~~~----~~k~vvv~F~-a~wC~~C~-~~~~~l~~~~~~~---~~v-~f~~  111 (162)
                      ..|+|.+.+  .         +|    +.+..    ..|++||+|| ..||+.|. ...+.|.+...++   .++ .++.
T Consensus         6 ~aPdf~l~~~~~~~~~~~~~~~G~~~~~~v~l~d~~~gk~vVL~fyP~~fTp~Ct~~e~~~f~~~~~~f~~~~g~~~V~g   85 (182)
T 1xiy_A            6 LIPNVKVMIDVRNMNNISDTDGSPNDFTSIDTHELFNNKKILLISLPGAFTPTCSTKMIPGYEEEYDYFIKENNFDDIYC   85 (182)
T ss_dssp             BCCCCEEEEEHHHHTC--------CCEEEEEHHHHSTTCEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTSCCSEEEE
T ss_pred             CCCCeEEEcccccccccccccCCCccceeEeHHHHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEE
Confidence            356777766  3         45    45543    2367777777 67999999 8888898888877   457 4887


Q ss_pred             EECCC----------------------cHHHHHhcCCCC------C-----ccEEEEEcCCeEEEEEcCC----------
Q 031271          112 IDVDW----------------------LPEAAKAFDLID------V-----LPTFVLVKRGKEIDRVVGA----------  148 (162)
Q Consensus       112 vd~d~----------------------~~~l~~~~~i~~------~-----~Ptiv~~~~Gk~i~~~~g~----------  148 (162)
                      |..|.                      +.++++.||+ .      +     ....+++.+|++.......          
T Consensus        86 vS~D~~~~~~~~~~~~~~~~f~lLsD~~~~~a~~yGv-~~~~~~~G~g~~~~R~tfvIddG~V~~~~v~~~~~~~~~~~~  164 (182)
T 1xiy_A           86 ITNNDIYVLKSWFKSMDIKKIKYISDGNSSFTDSMNM-LVDKSNFFMGMRPWRFVAIVENNILVKMFQEKDKQHNIQTDP  164 (182)
T ss_dssp             EESSCHHHHHHHHHHTTCCSSEEEECTTSHHHHHTTC-EEECGGGTCCEEECCEEEEEETTEEEEEEECSSCCTTCSSCC
T ss_pred             EeCCCHHHHHHHHHHcCCCCceEEEeCchHHHHHhCC-ceeccccCCCCceEEEEEEEcCCEEEEEEEeCCcccccccCc
Confidence            87752                      3468888887 3      1     3344444799887766422          


Q ss_pred             ----CHHHHHHHHHH
Q 031271          149 ----KKDELQMKTEK  159 (162)
Q Consensus       149 ----~~~~l~~~l~~  159 (162)
                          .++++.++|++
T Consensus       165 ~~~~~~~~vL~~L~~  179 (182)
T 1xiy_A          165 YDISTVNNVKEFLKN  179 (182)
T ss_dssp             CSTTSHHHHHHHHHC
T ss_pred             ccCCCHHHHHHHHHh
Confidence                46777777764

>1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A

Probab=97.89  E-value=4.8e-05  Score=48.41  Aligned_cols=57  Identities=21%  Similarity=0.338  Sum_probs=43.2

Q ss_pred             EEEEecC----CChhhhhhhHHHHHHHHhcCCcEEEEEECC-----CcH----HHHHhcCCCC-----CccEEEEEcCCe
Q 031271           79 VIYYTAA----WCGPCKFIEPYVKDFAAMYTDVQFIKIDVD-----WLP----EAAKAFDLID-----VLPTFVLVKRGK  140 (162)
Q Consensus        79 vv~F~a~----wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d-----~~~----~l~~~~~i~~-----~~Ptiv~~~~Gk  140 (162)
                      ++.|+.+    ||++|+++...|++.     ++.|-.+|++     ..+    ++.+.+|. .     .+|++++ .+|+
T Consensus         2 v~iY~~~~~~~~Cp~C~~ak~~L~~~-----gi~y~~idI~~~~~~~~~~~~~~l~~~~g~-~~~~~~tvP~v~i-~~g~   74 (87)
T 1aba_A            2 FKVYGYDSNIHKCGPCDNAKRLLTVK-----KQPFEFINIMPEKGVFDDEKIAELLTKLGR-DTQIGLTMPQVFA-PDGS   74 (87)
T ss_dssp             EEEEECCTTTSCCHHHHHHHHHHHHT-----TCCEEEEESCSBTTBCCHHHHHHHHHHHTC-SCCTTCCSCEEEC-TTSC
T ss_pred             EEEEEeCCCCCcCccHHHHHHHHHHc-----CCCEEEEEeeccccccCHHHHHHHHHHhCC-CCCCCCccCEEEE-ECCE
Confidence            4568899    999999999888773     5677777887     554    36677888 8     8998753 4787


Q ss_pred             EE
Q 031271          141 EI  142 (162)
Q Consensus       141 ~i  142 (162)
                      .+
T Consensus        75 ~i   76 (87)
T 1aba_A           75 HI   76 (87)
T ss_dssp             EE
T ss_pred             EE
Confidence            65

>3bj5_A Protein disulfide-isomerase; thioredoxin fold, chaperone, endoplasmic reticulum, isomeras membrane, redox-active center; 2.20A {Homo sapiens}

Probab=97.87  E-value=0.00027  Score=49.64  Aligned_cols=80  Identities=11%  Similarity=0.046  Sum_probs=58.9

Q ss_pred             EEEecCCChhhhhhhHHHHHHHHhcCC-cEEEEEEC--CCcHHHHHhcCCCCC--ccEEEEEcC---CeEEEEEc-CC-C
Q 031271           80 IYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDV--DWLPEAAKAFDLIDV--LPTFVLVKR---GKEIDRVV-GA-K  149 (162)
Q Consensus        80 v~F~a~wC~~C~~~~~~l~~~~~~~~~-v~f~~vd~--d~~~~l~~~~~i~~~--~Ptiv~~~~---Gk~i~~~~-g~-~  149 (162)
                      +.|....-..-..+.+.+.+++++|++ +.|+.+|.  +.....+..||+ ..  +|+++++..   ++. .... +. +
T Consensus        37 l~f~~~~~~~~~~~~~~~~~vAk~fkgki~Fv~vd~~~~~~~~~l~~fGl-~~~~~P~v~i~~~~~~~~K-y~~~~~~~t  114 (147)
T 3bj5_A           37 LLFLPKSVSDYDGKLSNFKTAAESFKGKILFAFIDSDHTDNQRILEFFGL-KKEECPAVRLITLEEEMTK-YKPESEELT  114 (147)
T ss_dssp             EEECCTTSSSHHHHHHHHHHHHHTTTTTCEEEEECTTCGGGHHHHHHTTC-CGGGCSEEEEEECSSSCEE-ECCSCCCCC
T ss_pred             EEEecCCcHhHHHHHHHHHHHHHHcCCceEEEEEecchHhHHHHHHHcCC-CcccCCEEEEEeccccccc-CCCCcccCC
Confidence            334433334455678899999999987 99999999  566678899999 75  899988853   332 2222 33 8


Q ss_pred             HHHHHHHHHHHh
Q 031271          150 KDELQMKTEKRR  161 (162)
Q Consensus       150 ~~~l~~~l~~~~  161 (162)
                      .+.|++|++.++
T Consensus       115 ~~~i~~Fv~d~l  126 (147)
T 3bj5_A          115 AERITEFCHRFL  126 (147)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999999876

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A

Probab=97.85  E-value=0.0001  Score=58.46  Aligned_cols=84  Identities=19%  Similarity=0.174  Sum_probs=67.0

Q ss_pred             EEEEEecCCChhhhhhhHHHHHHHHhcC---CcEEEEEECCCcHHHH----HhcCCCC-CccEEEEEc--CCeEEEE-Ec
Q 031271           78 VVIYYTAAWCGPCKFIEPYVKDFAAMYT---DVQFIKIDVDWLPEAA----KAFDLID-VLPTFVLVK--RGKEIDR-VV  146 (162)
Q Consensus        78 vvv~F~a~wC~~C~~~~~~l~~~~~~~~---~v~f~~vd~d~~~~l~----~~~~i~~-~~Ptiv~~~--~Gk~i~~-~~  146 (162)
                      .++.|..+||+.|....+.++++++++.   .+.|+.+|.+..+.++    +.||+ . ..|+++++.  +++.... +.
T Consensus       248 ~~l~f~~~~~~~~~~~~~~~~~vA~~~~~~~~~~f~~id~~~~~~~~~~~~~~~gi-~~~~P~~~i~~~~~~~~~~~~~~  326 (350)
T 1sji_A          248 HIVAFAERSDPDGYEFLEILKQVARDNTDNPDLSIVWIDPDDFPLLVAYWEKTFKI-DLFKPQIGVVNVTDADSVWMEIP  326 (350)
T ss_dssp             EEEEECCTTSHHHHHHHHHHHHHHHHGGGCSSCCEEEECGGGCHHHHHHHHHHCCS-CTTSCEEEEEESSSSCEEESCSS
T ss_pred             EEEEEEcCCCccHHHHHHHHHHHHHHhCCCCceEEEEECchhhHHHHHHHHhhcCC-CccCCcEEEEecccccccccCCC
Confidence            3566999999999999999999999996   4999999999888777    88999 7 579999984  3533321 22


Q ss_pred             ---CC-CHHHHHHHHHHHhC
Q 031271          147 ---GA-KKDELQMKTEKRRN  162 (162)
Q Consensus       147 ---g~-~~~~l~~~l~~~~~  162 (162)
                         +. +.+.|.+|++.+++
T Consensus       327 ~~~~~~~~~~i~~F~~d~~~  346 (350)
T 1sji_A          327 DDDDLPTAEELEDWIEDVLS  346 (350)
T ss_dssp             CCSCCCCHHHHHHHHHHHHT
T ss_pred             cccccCCHHHHHHHHHHHhc
Confidence               23 89999999998753

>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}

Probab=97.83  E-value=0.00016  Score=49.18  Aligned_cols=51  Identities=18%  Similarity=0.201  Sum_probs=38.2

Q ss_pred             CCChhhhhhhHHHHHHHHhcCCcE---EEEEECCCcHHH----HHhcCCCCCccEEEEEcCCeEEE
Q 031271           85 AWCGPCKFIEPYVKDFAAMYTDVQ---FIKIDVDWLPEA----AKAFDLIDVLPTFVLVKRGKEID  143 (162)
Q Consensus        85 ~wC~~C~~~~~~l~~~~~~~~~v~---f~~vd~d~~~~l----~~~~~i~~~~Ptiv~~~~Gk~i~  143 (162)
                      |||++|+++...|.+.     ++.   |..+|++..+++    .+..|. ..+|.+++  +|+.+.
T Consensus        29 p~Cp~C~~ak~lL~~~-----gv~~~~~~~~dv~~~~~~~~~l~~~sg~-~tvP~vfI--~g~~iG   86 (121)
T 3gx8_A           29 PKCGFSRATIGLLGNQ-----GVDPAKFAAYNVLEDPELREGIKEFSEW-PTIPQLYV--NKEFIG   86 (121)
T ss_dssp             BCTTHHHHHHHHHHHH-----TBCGGGEEEEECTTCHHHHHHHHHHHTC-CSSCEEEE--TTEEEE
T ss_pred             CCCccHHHHHHHHHHc-----CCCcceEEEEEecCCHHHHHHHHHHhCC-CCCCeEEE--CCEEEe
Confidence            4999999999999886     344   777888777654    445578 89998854  887663

>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A

Probab=97.83  E-value=6.3e-05  Score=48.54  Aligned_cols=57  Identities=11%  Similarity=0.085  Sum_probs=42.6

Q ss_pred             EEEEecCCChhh------hhhhHHHHHHHHhcCCcEEEEEECCCcHH----HHHhcC--CCCCccEEEEEcCCeEEE
Q 031271           79 VIYYTAAWCGPC------KFIEPYVKDFAAMYTDVQFIKIDVDWLPE----AAKAFD--LIDVLPTFVLVKRGKEID  143 (162)
Q Consensus        79 vv~F~a~wC~~C------~~~~~~l~~~~~~~~~v~f~~vd~d~~~~----l~~~~~--i~~~~Ptiv~~~~Gk~i~  143 (162)
                      ++.|+.+||+.|      +++...|++.     ++.|..+|++.+++    +.+.+|  . ..+|.+++  +|+.+.
T Consensus         4 v~ly~~~~C~~c~~~~~~~~ak~~L~~~-----~i~~~~~di~~~~~~~~~l~~~~g~~~-~~vP~ifi--~g~~ig   72 (93)
T 1t1v_A            4 LRVYSTSVTGSREIKSQQSEVTRILDGK-----RIQYQLVDISQDNALRDEMRTLAGNPK-ATPPQIVN--GNHYCG   72 (93)
T ss_dssp             EEEEECSSCSCHHHHHHHHHHHHHHHHT-----TCCCEEEETTSCHHHHHHHHHHTTCTT-CCSCEEEE--TTEEEE
T ss_pred             EEEEEcCCCCCchhhHHHHHHHHHHHHC-----CCceEEEECCCCHHHHHHHHHHhCCCC-CCCCEEEE--CCEEEe
Confidence            566899999999      7777776652     57788899987754    445778  7 79998754  887654

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A

Probab=97.81  E-value=0.00012  Score=58.66  Aligned_cols=76  Identities=16%  Similarity=0.141  Sum_probs=57.4

Q ss_pred             eEEEEEecCCChhhhhhhHHHHHHHHhcCC-cEEEEEECCCcHHHHHhcCCCCCccEEEEEcC--CeEEEEEcC--CCHH
Q 031271           77 KVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKR--GKEIDRVVG--AKKD  151 (162)
Q Consensus        77 ~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~-v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~--Gk~i~~~~g--~~~~  151 (162)
                      +++|.|+.+||..   ..+.|.+++..+.+ +.|+.+.   +.+++++|++ . .|++++|+.  ++.+. +.|  .+.+
T Consensus       146 ~~vv~ff~~~~~~---~~~~f~~~A~~~~~~~~F~~~~---~~~~~~~~~v-~-~p~i~lf~~~~~~~~~-y~g~~~~~~  216 (367)
T 3us3_A          146 IKLIGYFKNKDSE---HYKAFKEAAEEFHPYIPFFATF---DSKVAKKLTL-K-LNEIDFYEAFMEEPVT-IPDKPNSEE  216 (367)
T ss_dssp             CEEEEECSCTTCH---HHHHHHHHHHHHTTTSCEEEEC---CHHHHHHHTC-C-TTCEEEECTTCSSCEE-CSSSSCCHH
T ss_pred             cEEEEEECCCCch---HHHHHHHHHHhhcCCcEEEEEC---CHHHHHHcCC-C-CCeEEEEcCCCCCCee-cCCCCCCHH
Confidence            3388899998764   45678888888864 8888763   5689999999 6 499999975  34443 455  4899


Q ss_pred             HHHHHHHHHh
Q 031271          152 ELQMKTEKRR  161 (162)
Q Consensus       152 ~l~~~l~~~~  161 (162)
                      .|.+||..+.
T Consensus       217 ~l~~fi~~~~  226 (367)
T 3us3_A          217 EIVNFVEEHR  226 (367)
T ss_dssp             HHHHHHHHTC
T ss_pred             HHHHHHHHcC
Confidence            9999998753

>3f4s_A Alpha-DSBA1, putative uncharacterized protein; thioredoxin-fold, oxidoreductase; HET: PGE; 1.55A {Wolbachia pipientis} PDB: 3f4r_A* 3f4t_A*

Probab=97.78  E-value=9e-05  Score=55.79  Aligned_cols=39  Identities=15%  Similarity=0.301  Sum_probs=30.1

Q ss_pred             ceEEEEEecCCChhhhhhhHH-HHHHHHhcC---CcEEEEEEC
Q 031271           76 LKVVIYYTAAWCGPCKFIEPY-VKDFAAMYT---DVQFIKIDV  114 (162)
Q Consensus        76 k~vvv~F~a~wC~~C~~~~~~-l~~~~~~~~---~v~f~~vd~  114 (162)
                      +.+|+.|+...||+|+++.+. +.++.++|.   ++.|+..+.
T Consensus        40 ~vtIvef~Dy~CP~C~~~~~~~~~~l~~~~~~~g~V~~v~~~~   82 (226)
T 3f4s_A           40 PILMIEYASLTCYHCSLFHRNVFPKIKEKYIDTGKMLYIFRHF   82 (226)
T ss_dssp             SEEEEEEECTTCHHHHHHHHHTHHHHHHHHTTTTSEEEEEEEC
T ss_pred             CEEEEEEECCCCHHHHHHHHHHHHHHHHHcccCCeEEEEEEeC
Confidence            556899999999999999986 478887773   366665544

>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.75  E-value=0.0001  Score=49.33  Aligned_cols=57  Identities=12%  Similarity=0.191  Sum_probs=41.8

Q ss_pred             EEEEecCCChhhh------hhhHHHHHHHHhcCCcEEEEEECCCcHH----HHHhc--------CCCCCccEEEEEcCCe
Q 031271           79 VIYYTAAWCGPCK------FIEPYVKDFAAMYTDVQFIKIDVDWLPE----AAKAF--------DLIDVLPTFVLVKRGK  140 (162)
Q Consensus        79 vv~F~a~wC~~C~------~~~~~l~~~~~~~~~v~f~~vd~d~~~~----l~~~~--------~i~~~~Ptiv~~~~Gk  140 (162)
                      |+.|+.+||++|.      ++...|++     .++.|..+|++.+++    +..++        |. ..+|.+++  +|+
T Consensus        10 V~vy~~~~C~~C~~~~~~~~ak~~L~~-----~gi~y~~vdI~~~~~~~~~l~~~~~~~~~~~~g~-~tvP~vfi--~g~   81 (111)
T 2ct6_A           10 IRVFIASSSGFVAIKKKQQDVVRFLEA-----NKIEFEEVDITMSEEQRQWMYKNVPPEKKPTQGN-PLPPQIFN--GDR   81 (111)
T ss_dssp             EEEEECSSCSCHHHHHHHHHHHHHHHH-----TTCCEEEEETTTCHHHHHHHHHSCCTTTCCSSSS-CCSCEEEE--TTE
T ss_pred             EEEEEcCCCCCcccchhHHHHHHHHHH-----cCCCEEEEECCCCHHHHHHHHHHhcccccccCCC-CCCCEEEE--CCE
Confidence            5678899999999      66666655     268889999988765    34454        66 78898754  787


Q ss_pred             EEE
Q 031271          141 EID  143 (162)
Q Consensus       141 ~i~  143 (162)
                      .+.
T Consensus        82 ~iG   84 (111)
T 2ct6_A           82 YCG   84 (111)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            654

>3ec3_A Protein disulfide-isomerase A4; thioredoxin-like fold, endoplasmic reticulum, glycoprotein, redox-active center; 1.92A {Rattus norvegicus}

Probab=97.74  E-value=0.00039  Score=52.72  Aligned_cols=99  Identities=17%  Similarity=0.134  Sum_probs=73.3

Q ss_pred             CCceeEeechhhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhhhhhhHHHH
Q 031271           19 TPLVMELQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYVK   98 (162)
Q Consensus        19 ~~~v~~i~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~~~l~   98 (162)
                      .+.+..+++.++++++++.   +++.+                                 +|-|+.++|   ....+.|.
T Consensus         5 gP~v~~l~s~~~~~~~~~~---~~~v~---------------------------------vVgff~~~~---~~~~~~F~   45 (250)
T 3ec3_A            5 SPPSKEILTLKQVQEFLKD---GDDVV---------------------------------ILGVFQGVG---DPGYLQYQ   45 (250)
T ss_dssp             CCSSEECCCHHHHHHHHHH---CSSCE---------------------------------EEEECSCTT---CHHHHHHH
T ss_pred             CCCceecCCHHHHHHHHhc---CCCeE---------------------------------EEEEEcCCC---chHHHHHH
Confidence            4668899999999888753   14556                                 788889885   45677899


Q ss_pred             HHHHhcC-CcEEEEEECCCcHHHHHhcCCCCCccEEEEEcC--------CeEEEEEc-C-CCHHHHHHHHHHHh
Q 031271           99 DFAAMYT-DVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKR--------GKEIDRVV-G-AKKDELQMKTEKRR  161 (162)
Q Consensus        99 ~~~~~~~-~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~--------Gk~i~~~~-g-~~~~~l~~~l~~~~  161 (162)
                      +++..+. ++.|...   .+++++.+|++ .. |++++|+.        ...+.... | .+.+.|.+||..+.
T Consensus        46 ~~A~~lr~~~~F~~t---~~~~v~~~~~v-~~-p~ivlfk~~~~~~kfde~~~~y~g~~~~~~~~l~~fi~~~~  114 (250)
T 3ec3_A           46 DAANTLREDYKFHHT---FSTEIAKFLKV-SL-GKLVLMQPEKFQSKYEPRMHVMDVQGSTEASAIKDYVVKHA  114 (250)
T ss_dssp             HHHHHHTTTCCEEEE---CCHHHHHHHTC-CS-SEEEEECCGGGCCTTSCSCEEEECCTTSCHHHHHHHHHHHS
T ss_pred             HHHHhhhcCcEEEEE---CcHHHHHHcCC-CC-CeEEEEecchhhccccccceeccCCCCCCHHHHHHHHHHcC
Confidence            9999884 5888875   46788999999 66 99999973        23333332 3 48999999998763

>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10

Probab=97.74  E-value=9.4e-05  Score=55.62  Aligned_cols=56  Identities=18%  Similarity=0.271  Sum_probs=43.6

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCc---HHHHHhcCCCCCccEEEEEcCCeEE
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWL---PEAAKAFDLIDVLPTFVLVKRGKEI  142 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~---~~l~~~~~i~~~~Ptiv~~~~Gk~i  142 (162)
                      ++.|+.+||++|+++...|++.     ++.|-.+|++..   .++.+.+|. ..+|++++  +|+.+
T Consensus       172 i~ly~~~~Cp~C~~a~~~L~~~-----~i~~~~~~i~~~~~~~~l~~~~g~-~~vP~~~~--~g~~i  230 (241)
T 1nm3_A          172 ISIFTKPGCPFCAKAKQLLHDK-----GLSFEEIILGHDATIVSVRAVSGR-TTVPQVFI--GGKHI  230 (241)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHH-----TCCCEEEETTTTCCHHHHHHHTCC-SSSCEEEE--TTEEE
T ss_pred             EEEEECCCChHHHHHHHHHHHc-----CCceEEEECCCchHHHHHHHHhCC-CCcCEEEE--CCEEE
Confidence            6778999999999999998874     455666777654   357888999 99999854  77654

>2xhf_A Peroxiredoxin 5; oxidoreductase, antioxidant enzymes; 1.30A {Alvinella pompejana}

Probab=97.66  E-value=0.00025  Score=51.27  Aligned_cols=93  Identities=11%  Similarity=0.044  Sum_probs=64.3

Q ss_pred             eccccceeEEecCC-Ceeeee----CceEEEEEe-cCCChhhhhhhHHHHHHHHhcC--CcE-EEEEECC----------
Q 031271           55 IYCINEMVLNINDG-GNVVFW----VLKVVIYYT-AAWCGPCKFIEPYVKDFAAMYT--DVQ-FIKIDVD----------  115 (162)
Q Consensus        55 ~~~~~~~~~~~~~~-~~~~~~----~k~vvv~F~-a~wC~~C~~~~~~l~~~~~~~~--~v~-f~~vd~d----------  115 (162)
                      ....|+|.+...++ +.+..+    .|+|||+|| ..||+.|....+.|.+...++.  ++. ++.|..|          
T Consensus        17 Gd~aPdf~l~~~g~~~~v~L~d~~~gk~vVL~fyP~~fTp~Ct~e~~~f~~~~~ef~~~gv~~VigIS~D~~~~~~~w~~   96 (171)
T 2xhf_A           17 GDIIPDVLVYEDVPSKSFPIHDVFRGRKGILFSVVGAFVPGSNNHIPEYLSLYDKFKEEGYHTIACIAVNDPFVMAAWGK   96 (171)
T ss_dssp             TCBCCCCEEECSSTTCEEETHHHHTTSEEEEEECSCTTCTTTTSSHHHHHHTHHHHHHTTCCEEEEEESSCHHHHHHHHH
T ss_pred             cCCCCCeEEecCCCCcEEEhHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHH
Confidence            34568888884332 666543    367888888 6799999999999988777775  574 8778775          


Q ss_pred             -------------CcHHHHHhcCCCCC-----------ccEEEEEcCCeEEEEEcCC
Q 031271          116 -------------WLPEAAKAFDLIDV-----------LPTFVLVKRGKEIDRVVGA  148 (162)
Q Consensus       116 -------------~~~~l~~~~~i~~~-----------~Ptiv~~~~Gk~i~~~~g~  148 (162)
                                   .+.++++.||+ ..           .-..+++.+|++.......
T Consensus        97 ~~~~~~~f~lLSD~~~~~a~ayGv-~~~~~~~g~g~~~~R~tfvIddG~V~~~~v~~  152 (171)
T 2xhf_A           97 TVDPEHKIRMLADMHGEFTRALGT-ELDSSKMLGNNRSRRYAMLIDDNKIRSVSTEP  152 (171)
T ss_dssp             HHCTTCCSEEEECTTSHHHHHHTC-BCCCHHHHSSCCBCCEEEEEETTEEEEEEETT
T ss_pred             hcCCCCCeEEEEeCCchHHHHhCC-ceeccccCCCcceEEEEEEEeCCEEEEEEEeC
Confidence                         23468888887 32           1233334699988877765

>3bci_A Disulfide bond protein A; thiol-disulfide oxidoreductase, redox protein, protein folding, redox active centre; 1.81A {Staphylococcus aureus} PDB: 3bd2_A 3bck_A

Probab=97.53  E-value=0.00078  Score=48.44  Aligned_cols=37  Identities=22%  Similarity=0.394  Sum_probs=28.9

Q ss_pred             ceEEEEEecCCChhhhhhhHHH-HHHHHhcC---CcEEEEE
Q 031271           76 LKVVIYYTAAWCGPCKFIEPYV-KDFAAMYT---DVQFIKI  112 (162)
Q Consensus        76 k~vvv~F~a~wC~~C~~~~~~l-~~~~~~~~---~v~f~~v  112 (162)
                      +++|+.|+...||+|..+.+.+ ..+.++|+   ++.+...
T Consensus        12 ~~~i~~f~D~~Cp~C~~~~~~l~~~l~~~~~~~~~v~~~~~   52 (186)
T 3bci_A           12 KPLVVVYGDYKCPYCKELDEKVMPKLRKNYIDNHKVEYQFV   52 (186)
T ss_dssp             CCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTSSEEEEE
T ss_pred             CeEEEEEECCCChhHHHHHHHHHHHHHHHhccCCeEEEEEE
Confidence            4458999999999999999998 57777774   3665544

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}

Probab=97.42  E-value=0.0015  Score=52.33  Aligned_cols=85  Identities=9%  Similarity=-0.009  Sum_probs=63.3

Q ss_pred             CceEEEEEecCCChh-hhhhhHHHHHHHHhcCC-cEEEEEECCCcHHHHHhcCCCC--CccEEEEEcCCeEEEEEc---C
Q 031271           75 VLKVVIYYTAAWCGP-CKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLID--VLPTFVLVKRGKEIDRVV---G  147 (162)
Q Consensus        75 ~k~vvv~F~a~wC~~-C~~~~~~l~~~~~~~~~-v~f~~vd~d~~~~l~~~~~i~~--~~Ptiv~~~~Gk~i~~~~---g  147 (162)
                      ++++++.|+.++|.. |..+...+.+++.++++ +.|+.+|.+..+.+...||+ .  .+|.++++..++. ..+.   +
T Consensus       236 ~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~id~~~~~~~~~~~gl-~~~~~P~i~i~~~~~~-y~~~~~~~  313 (382)
T 2r2j_A          236 GLPFLILFHMKEDTESLEIFQNEVARQLISEKGTINFLHADCDKFRHPLLHIQK-TPADCPVIAIDSFRHM-YVFGDFKD  313 (382)
T ss_dssp             CCCEEEEEECTTCCHHHHHHHHHHHHHTGGGTTTSEEEEEETTTTHHHHHHTTC-CGGGCSEEEEECSSCE-EECCCSGG
T ss_pred             CCcEEEEEecCCchHHHHHHHHHHHHHHHHhCCeeEEEEEchHHhHHHHHHcCC-CccCCCEEEEEcchhc-CCCCcccc
Confidence            455589999998843 55555666776667765 99999999999999999999 7  6899988865544 2222   2


Q ss_pred             C-CHHHHHHHHHHHh
Q 031271          148 A-KKDELQMKTEKRR  161 (162)
Q Consensus       148 ~-~~~~l~~~l~~~~  161 (162)
                      . +++.|.+|++.++
T Consensus       314 ~~~~~~i~~F~~d~~  328 (382)
T 2r2j_A          314 VLIPGKLKQFVFDLH  328 (382)
T ss_dssp             GGSTTHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHH
Confidence            2 5688999998765

>2jad_A Yellow fluorescent protein glutaredoxin fusion protein; electron transport, redox- active center, yeast, GRX1P, transport; HET: PIA; 2.7A {Aequorea victoria}

Probab=97.37  E-value=0.00027  Score=56.86  Aligned_cols=61  Identities=10%  Similarity=0.156  Sum_probs=41.6

Q ss_pred             EEEEecCCChhhhhhhH-HHHHHHHhcCCcEEEEEEC-CCc----HHHHHhcCCCCCccEEEEEcCCeEE
Q 031271           79 VIYYTAAWCGPCKFIEP-YVKDFAAMYTDVQFIKIDV-DWL----PEAAKAFDLIDVLPTFVLVKRGKEI  142 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~-~l~~~~~~~~~v~f~~vd~-d~~----~~l~~~~~i~~~~Ptiv~~~~Gk~i  142 (162)
                      |+.|+.+||++|+++.. .|++..-.|..+.++.+|. +..    .++.+.+|. ..+|++++  +|+.+
T Consensus       263 VvVYsk~~CPyC~~Ak~~LL~~~gV~y~eidVlEld~~~~~~e~~~~L~~~tG~-~TVPqVFI--~Gk~I  329 (362)
T 2jad_A          263 IFVASKTYCPYSHAALNTLFEKLKVPRSKVLVLQLNDMKEGADIQAALYEINGQ-RTVPNIYI--NGKHI  329 (362)
T ss_dssp             EEEEECTTCHHHHHHHHHHHTTTCCCTTTEEEEEGGGSTTHHHHHHHHHHHHCC-CSSCEEEE--TTEEE
T ss_pred             EEEEEcCCCcchHHHHHHHHHHcCCCcceEEEEEeccccCCHHHHHHHHHHHCC-CCcCEEEE--CCEEE
Confidence            56689999999999876 5666544454455555442 223    345567899 99998754  88765

>3gmf_A Protein-disulfide isomerase; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Novosphingobium aromaticivorans}

Probab=97.30  E-value=0.0023  Score=47.27  Aligned_cols=35  Identities=20%  Similarity=0.388  Sum_probs=28.9

Q ss_pred             HhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHHHHHHHhC
Q 031271          122 KAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQMKTEKRRN  162 (162)
Q Consensus       122 ~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~~l~~~~~  162 (162)
                      +.+|| .++||+++  ||+.   +.|. +.+.|++.|++.++
T Consensus       162 ~~~GV-~GtPtfvv--ng~~---~~G~~~~e~l~~~i~~~~~  197 (205)
T 3gmf_A          162 NQYNV-SGTPSFMI--DGIL---LAGTHDWASLRPQILARLN  197 (205)
T ss_dssp             HHHCC-CSSSEEEE--TTEE---CTTCCSHHHHHHHHHHHHT
T ss_pred             HHcCC-ccCCEEEE--CCEE---EeCCCCHHHHHHHHHHHhh
Confidence            67899 99999987  8874   5677 89999999987653

>2kok_A Arsenate reductase; brucellosis, zoonotic, oxidoreductase, S genomics, seattle structural genomics center for infectious ssgcid; NMR {Brucella abortus}

Probab=97.14  E-value=0.0018  Score=43.76  Aligned_cols=68  Identities=19%  Similarity=0.203  Sum_probs=48.4

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcH-------HHHHhcC--------------------------
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLP-------EAAKAFD--------------------------  125 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~-------~l~~~~~--------------------------  125 (162)
                      +..|+.++|+.|++....|++.     ++.|-.+|++..+       ++.+++|                          
T Consensus         7 i~iY~~~~C~~C~ka~~~L~~~-----gi~y~~~di~~~~~~~~~l~~~~~~~g~~~l~n~~~~~~k~l~~~~~~~~~~~   81 (120)
T 2kok_A            7 VTIYGIKNCDTMKKARIWLEDH-----GIDYTFHDYKKEGLDAETLDRFLKTVPWEQLLNRAGTTFRKLPEDVRSNVDAA   81 (120)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHH-----TCCEEEEEHHHHCCCHHHHHHHHHHSCGGGTBCSSSHHHHHSCHHHHHSCCHH
T ss_pred             EEEEECCCChHHHHHHHHHHHc-----CCcEEEEeeeCCCCCHHHHHHHHHHcChHhhccCCchhhHhcCchhhccCCHH
Confidence            5668899999999999888874     5666667775332       3445666                          


Q ss_pred             -----------CCCCccEEEEEcCCeEEEEEcCCCHHHHHHHH
Q 031271          126 -----------LIDVLPTFVLVKRGKEIDRVVGAKKDELQMKT  157 (162)
Q Consensus       126 -----------i~~~~Ptiv~~~~Gk~i~~~~g~~~~~l~~~l  157 (162)
                                 . ...|.++.  +++.   ..|++++.+.+++
T Consensus        82 ~~~~~l~~~p~l-ikrPiv~~--~~~~---~vGf~~~~~~~~l  118 (120)
T 2kok_A           82 SARELMLAQPSM-VKRPVLER--DGKL---MVGFKPAQYEAYF  118 (120)
T ss_dssp             HHHHHHHHCGGG-BCSSEEEE--TTEE---EECCCHHHHHHHH
T ss_pred             HHHHHHHhCccc-EECCEEEE--CCEE---EEeCCHHHHHHHh
Confidence                       4 56786653  6643   4699999988876

>3kzq_A Putative uncharacterized protein VP2116; protein with unknown function, STRU genomics, PSI, MCSG, protein structure initiative; HET: PG6; 2.10A {Vibrio parahaemolyticus}

Probab=97.12  E-value=0.0078  Score=44.00  Aligned_cols=41  Identities=17%  Similarity=0.160  Sum_probs=34.4

Q ss_pred             HHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHHHHHHHh
Q 031271          120 AAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQMKTEKRR  161 (162)
Q Consensus       120 l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~~l~~~~  161 (162)
                      .++.+|| .++||+++..+|+.+....|. +.+.+.+.|++++
T Consensus       161 ~a~~~gv-~g~Pt~~v~~~~~~~~~~~g~~~~e~~~~~i~~~~  202 (208)
T 3kzq_A          161 LAKSLGV-NSYPSLVLQINDAYFPIEVDYLSTEPTLKLIRERI  202 (208)
T ss_dssp             HHHHTTC-CSSSEEEEEETTEEEEECCCSSCSHHHHHHHHHHH
T ss_pred             HHHHcCC-CcccEEEEEECCEEEEeeCCCCCHHHHHHHHHHHH
Confidence            4557888 999999998899988888888 7888888888764

>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A

Probab=96.99  E-value=0.0036  Score=42.60  Aligned_cols=57  Identities=12%  Similarity=0.162  Sum_probs=40.4

Q ss_pred             EEEEecCCChhhh------hhhHHHHHHHHhcCCcEEEEEECCCcHH----HHHhc--------CCCCCccEEEEEcCCe
Q 031271           79 VIYYTAAWCGPCK------FIEPYVKDFAAMYTDVQFIKIDVDWLPE----AAKAF--------DLIDVLPTFVLVKRGK  140 (162)
Q Consensus        79 vv~F~a~wC~~C~------~~~~~l~~~~~~~~~v~f~~vd~d~~~~----l~~~~--------~i~~~~Ptiv~~~~Gk  140 (162)
                      |..|++++|++|.      ++...|+.     .++.|-.+|++.+++    +.++.        |. ..+|.+++  +|+
T Consensus         2 V~vYtt~~c~~c~~kk~c~~aK~lL~~-----kgV~feEidI~~d~~~r~eM~~~~~~~~~~~~G~-~tvPQIFi--~~~   73 (121)
T 1u6t_A            2 IRVYIASSSGSTAIKKKQQDVLGFLEA-----NKIGFEEKDIAANEENRKWMRENVPENSRPATGY-PLPPQIFN--ESQ   73 (121)
T ss_dssp             EEEEECTTCSCHHHHHHHHHHHHHHHH-----TTCCEEEEECTTCHHHHHHHHHHSCGGGSCSSSS-CCSCEEEE--TTE
T ss_pred             EEEEecCCCCCccchHHHHHHHHHHHH-----CCCceEEEECCCCHHHHHHHHHhccccccccCCC-cCCCEEEE--CCE
Confidence            6678899999994      44444443     379999999987654    45566        77 78887754  776


Q ss_pred             EEE
Q 031271          141 EID  143 (162)
Q Consensus       141 ~i~  143 (162)
                      .+.
T Consensus        74 ~iG   76 (121)
T 1u6t_A           74 YRG   76 (121)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            554

>1rw1_A Conserved hypothetical protein YFFB; thioredoxin fold, structure 2 function project, S2F, structu genomics, unknown function; HET: MSE IPA; 1.02A {Pseudomonas aeruginosa} SCOP: c.47.1.12

Probab=96.84  E-value=0.003  Score=42.27  Aligned_cols=68  Identities=16%  Similarity=0.214  Sum_probs=47.2

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcH-------HHHHhcC--------------------------
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLP-------EAAKAFD--------------------------  125 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~-------~l~~~~~--------------------------  125 (162)
                      +..|+.++|+.|++....|++     .++.|-.+|+++.+       ++.++.|                          
T Consensus         2 i~iY~~~~C~~C~kak~~L~~-----~gi~~~~~di~~~~~~~~~l~~~~~~~g~~~l~n~~~~~~k~l~~~~~~~~~~~   76 (114)
T 1rw1_A            2 YVLYGIKACDTMKKARTWLDE-----HKVAYDFHDYKAVGIDREHLRRWCAEHGWQTVLNRAGTTFRKLDEAQKADLDEA   76 (114)
T ss_dssp             EEEEECSSCHHHHHHHHHHHH-----TTCCEEEEEHHHHCCCHHHHHHHHHHHCHHHHBCTTSHHHHTSCHHHHTTCCHH
T ss_pred             EEEEECCCChHHHHHHHHHHH-----CCCceEEEeecCCCCCHHHHHHHHHhCChHHhccCCcHhHHhcCccccccCCHH
Confidence            456889999999999988877     36777777775332       2334444                          


Q ss_pred             -----------CCCCccEEEEEcCCeEEEEEcCCCHHHHHHHH
Q 031271          126 -----------LIDVLPTFVLVKRGKEIDRVVGAKKDELQMKT  157 (162)
Q Consensus       126 -----------i~~~~Ptiv~~~~Gk~i~~~~g~~~~~l~~~l  157 (162)
                                 . ...|.++  .+|+.   ..|++++.+.+++
T Consensus        77 ~~~~~l~~~p~l-ikrPiv~--~~~~~---~vGf~~~~~~~~l  113 (114)
T 1rw1_A           77 KAIELMLAQPSM-IKRPVLE--LGGRT---LVGFKPDAYAAAL  113 (114)
T ss_dssp             HHHHHHHHCGGG-BCSCEEE--CSSCE---EESCCHHHHHHHH
T ss_pred             HHHHHHHhChhh-eeCcEEE--ECCEE---EEeCCHHHHHHHh
Confidence                       3 4678664  35544   4699999988876

>3c7m_A Thiol:disulfide interchange protein DSBA-like; redox protein, periplasm, redox-active center, oxidoreductase; HET: PGE; 1.55A {Escherichia coli} PDB: 3l9u_A

Probab=96.72  E-value=0.0027  Score=45.57  Aligned_cols=39  Identities=21%  Similarity=0.203  Sum_probs=32.8

Q ss_pred             ceEEEEEecCCChhhhhhhHHH-HHHHHhcCC-cEEEEEEC
Q 031271           76 LKVVIYYTAAWCGPCKFIEPYV-KDFAAMYTD-VQFIKIDV  114 (162)
Q Consensus        76 k~vvv~F~a~wC~~C~~~~~~l-~~~~~~~~~-v~f~~vd~  114 (162)
                      ++++|.||..+||+|..+.+.+ .++.+.+++ +.+..+.+
T Consensus        18 ~~~~ief~d~~CP~C~~~~~~l~~~l~~~~~~~v~~~~~~l   58 (195)
T 3c7m_A           18 DKTLIKVFSYACPFCYKYDKAVTGPVSEKVKDIVAFTPFHL   58 (195)
T ss_dssp             TTEEEEEECTTCHHHHHHHHHTHHHHHHHTTTTCEEEEEEC
T ss_pred             CcEEEEEEeCcCcchhhCcHHHHHHHHHhCCCceEEEEEec
Confidence            4458889999999999999999 999998875 77776654

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}

Probab=96.71  E-value=0.011  Score=44.07  Aligned_cols=79  Identities=9%  Similarity=0.086  Sum_probs=49.7

Q ss_pred             ceEEEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCCCccEEEEE-cCCeEEEEEcCC-CHHHH
Q 031271           76 LKVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLV-KRGKEIDRVVGA-KKDEL  153 (162)
Q Consensus        76 k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~-~~Gk~i~~~~g~-~~~~l  153 (162)
                      +.+++.|....|..++...   ..+. .++++.+..++ +.+..++++||| ..+|+++++ ++|+........ +.+.+
T Consensus       158 ~~~al~f~~~~~~~~~~~~---~d~~-~~~~i~v~~~~-~~~~~l~~~f~v-~~~Pslvl~~~~g~~~~~~~~~~~r~~~  231 (244)
T 3q6o_A          158 EYLALIFEXGGSYLAREVA---LDLS-QHKGVAVRRVL-NTEANVVRKFGV-TDFPSCYLLFRNGSVSRVPVLMESRSFY  231 (244)
T ss_dssp             SEEEEEEECTTCCHHHHHH---HHTT-TCTTEEEEEEE-TTCHHHHHHHTC-CCSSEEEEEETTSCEEECCCSSSSHHHH
T ss_pred             ceEEEEEEECCcchHHHHH---HHhc-cCCceEEEEEe-CchHHHHHHcCC-CCCCeEEEEeCCCCeEeeccccccHHHH
Confidence            4446778776654333221   1111 12446665544 556799999999 999999877 678777655555 66777


Q ss_pred             HHHHHHH
Q 031271          154 QMKTEKR  160 (162)
Q Consensus       154 ~~~l~~~  160 (162)
                      ...|+++
T Consensus       232 ~~~l~~~  238 (244)
T 3q6o_A          232 TAYLQRL  238 (244)
T ss_dssp             HHHHHTC
T ss_pred             HHHHHhC
Confidence            6666653

>3ec3_A Protein disulfide-isomerase A4; thioredoxin-like fold, endoplasmic reticulum, glycoprotein, redox-active center; 1.92A {Rattus norvegicus}

Probab=96.69  E-value=0.024  Score=42.68  Aligned_cols=86  Identities=15%  Similarity=0.157  Sum_probs=60.4

Q ss_pred             CceEEEEEec-CCC---hh-hhhhhHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCCC--c-cEEEEEc-CCeEEEEE
Q 031271           75 VLKVVIYYTA-AWC---GP-CKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDV--L-PTFVLVK-RGKEIDRV  145 (162)
Q Consensus        75 ~k~vvv~F~a-~wC---~~-C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~l~~~~~i~~~--~-Ptiv~~~-~Gk~i~~~  145 (162)
                      .++.++.|+. +++   .. .......+.+++++|+.+.|+.+|.+......+.||+ ..  . |.++++. +++....-
T Consensus       132 ~~~l~~~~~~~d~~~~~~~~~~~~~~~~~~vAk~~kki~F~~~d~~~~~~~l~~fgl-~~~~~~p~~~~~~~~~~ky~~~  210 (250)
T 3ec3_A          132 KRPLVVVYYSVDFSFDYRTATQFWRNKVLEVAKDFPEYTFAIADEEDYATEVKDLGL-SESGGDVNAAILDESGKKFAME  210 (250)
T ss_dssp             SSSEEEEEECCCCSTTTHHHHHHHHHHHHHHHTTCTTSEEEEEETTTTHHHHHHTTC-SSCSCSCEEEEECTTSCEEECC
T ss_pred             cCccEEEEEecccccccchhHHHHHHHHHHHHHhhcceeEEEEcHHHHHHHHHHcCC-CccCCCcEEEEEcCCCceecCC
Confidence            4555666664 333   33 3457888899999998899999999988888899998 63  3 4666663 44333222


Q ss_pred             cC-CCHHHHHHHHHHHh
Q 031271          146 VG-AKKDELQMKTEKRR  161 (162)
Q Consensus       146 ~g-~~~~~l~~~l~~~~  161 (162)
                      .+ .+.+.|.+|++.++
T Consensus       211 ~~~~t~~~i~~Fv~~~~  227 (250)
T 3ec3_A          211 PEEFDSDALREFVMAFK  227 (250)
T ss_dssp             CCSCCHHHHHHHHHHHH
T ss_pred             cccCCHHHHHHHHHHHH
Confidence            13 38999999999875

>2wul_A Glutaredoxin related protein 5; chromosome 14 open reading frame 87, oxidoreductase, thiored family, GLRX5, FLB4739; HET: GSH; 2.40A {Homo sapiens}

Probab=96.57  E-value=0.014  Score=39.50  Aligned_cols=51  Identities=18%  Similarity=0.249  Sum_probs=36.9

Q ss_pred             CCChhhhhhhHHHHHHHHhcCCc-EEEEEECCCcHHH----HHhcCCCCCccEEEEEcCCeEEE
Q 031271           85 AWCGPCKFIEPYVKDFAAMYTDV-QFIKIDVDWLPEA----AKAFDLIDVLPTFVLVKRGKEID  143 (162)
Q Consensus        85 ~wC~~C~~~~~~l~~~~~~~~~v-~f~~vd~d~~~~l----~~~~~i~~~~Ptiv~~~~Gk~i~  143 (162)
                      |.|++|.++...|.+.     ++ .|..+|++..+++    .+..+- ..+|.+++  +|+.+.
T Consensus        33 P~C~fc~~ak~lL~~~-----gv~~~~~~~v~~~~~~r~~l~~~sg~-~TvPqIFI--~g~~IG   88 (118)
T 2wul_A           33 PQCGFSNAVVQILRLH-----GVRDYAAYNVLDDPELRQGIKDYSNW-PTIPQVYL--NGEFVG   88 (118)
T ss_dssp             BSSHHHHHHHHHHHHT-----TCCSCEEEETTSCHHHHHHHHHHHTC-CSSCEEEE--TTEEEE
T ss_pred             CCCHHHHHHHHHHHHh-----CCcCeEeecccCCHHHHHHHHHhccC-CCCCeEeE--CCEEEC
Confidence            5799999998888653     44 4777888877654    445577 78888754  887764

>2h8l_A Protein disulfide-isomerase A3; thioredoxin-like fold; 2.00A {Homo sapiens}

Probab=96.54  E-value=0.012  Score=44.39  Aligned_cols=84  Identities=14%  Similarity=0.199  Sum_probs=58.4

Q ss_pred             ceEEEEEecCCCh---hh-hhhhHHHHHHHHhcCC----cEEEEEECCCcHHHHHhcCCCC----CccEEEEE-cCCeEE
Q 031271           76 LKVVIYYTAAWCG---PC-KFIEPYVKDFAAMYTD----VQFIKIDVDWLPEAAKAFDLID----VLPTFVLV-KRGKEI  142 (162)
Q Consensus        76 k~vvv~F~a~wC~---~C-~~~~~~l~~~~~~~~~----v~f~~vd~d~~~~l~~~~~i~~----~~Ptiv~~-~~Gk~i  142 (162)
                      ++.++.|+...+.   .| ......+.+++++|++    +.|+.+|.+..+.+.+.||+ .    .+|.++++ .+++..
T Consensus       130 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~vA~~~~~k~~~~~F~~~d~~~~~~~~~~fgl-~~~~~~~P~v~i~~~~~~ky  208 (252)
T 2h8l_A          130 KDLLIAYYDVDYEKNAKGSNYWRNRVMMVAKKFLDAGHKLNFAVASRKTFSHELSDFGL-ESTAGEIPVVAIRTAKGEKF  208 (252)
T ss_dssp             SSEEEEEECCBTTTBHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEETTTTHHHHGGGTC-CCCSCSSCEEEEECTTSCEE
T ss_pred             CCeEEEEeecchhhcchhHHHHHHHHHHHHHHccccCceEEEEEEchHHHHHHHHHcCC-CCccCCCCEEEEEeCcCcEe
Confidence            3456666644332   11 1466777888888852    99999999999889999998 5    48999988 445433


Q ss_pred             EEEcCC-CHHH--HHHHHHHHh
Q 031271          143 DRVVGA-KKDE--LQMKTEKRR  161 (162)
Q Consensus       143 ~~~~g~-~~~~--l~~~l~~~~  161 (162)
                       .+.+. +.+.  |.+|++.++
T Consensus       209 -~~~~~~t~~~~~i~~F~~~~~  229 (252)
T 2h8l_A          209 -VMQEEFSRDGKALERFLQDYF  229 (252)
T ss_dssp             -ECCSCCCTTSHHHHHHHHHHH
T ss_pred             -cCCcccCcchHHHHHHHHHHH
Confidence             23343 6677  999998765

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}

Probab=96.48  E-value=0.01  Score=46.05  Aligned_cols=76  Identities=14%  Similarity=0.187  Sum_probs=49.6

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCC-cEEEEEECCCcHHHH--HhcC------------------CCCCccEEEEEc
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAA--KAFD------------------LIDVLPTFVLVK  137 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~-v~f~~vd~d~~~~l~--~~~~------------------i~~~~Ptiv~~~  137 (162)
                      ++.|...     ....+.|.+++..+.+ +.|+.++-++...+.  .+|+                  . ...|++++|+
T Consensus       166 vi~fs~~-----~~~~~~f~~~A~~~~~~~~F~~v~~~~~a~~~~~~~~~~~~p~i~~~~~~~~~~~~~-~~~P~lv~~~  239 (298)
T 3ed3_A          166 VVLFSKQ-----DKISPVYKSIALDWLGKFDFYSISNKKLKQLTDMNPTYEKTPEIFKYLQKVIPEQRQ-SDKSKLVVFD  239 (298)
T ss_dssp             EEEEESS-----SSCCHHHHHHHHHTBTTEEEEEEEGGGCCCCCTTCTTSTTCHHHHHHHHHHHHHHTT-CSSCEEEEEE
T ss_pred             EEEEcCC-----CcchHHHHHHHHHhhcCcEEEEEcchHhhhhhhhhhhcccCcchhhhhhcccccccc-cCCCeEEEEc
Confidence            7767322     2456789999998865 999999765332222  2232                  2 4689999995


Q ss_pred             C-CeEEEEEcC-C-CHHHHHHHHHHH
Q 031271          138 R-GKEIDRVVG-A-KKDELQMKTEKR  160 (162)
Q Consensus       138 ~-Gk~i~~~~g-~-~~~~l~~~l~~~  160 (162)
                      + ++....+.| . +.+.|.+||.+.
T Consensus       240 ~~~~~~~~y~g~~~~~~~i~~fi~~~  265 (298)
T 3ed3_A          240 ADKDKFWEYEGNSINKNDISKFLRDT  265 (298)
T ss_dssp             TTTTEEEECCCSSCCHHHHHHHHHHH
T ss_pred             CCCCceEEeccccCCHHHHHHHHHhh
Confidence            3 334444453 4 899999999843

>2in3_A Hypothetical protein; DSBA family, FRNE-like subfamily, disulfide isomerase, struc genomics, PSI-2, protein structure initiative; 1.85A {Nitrosomonas europaea}

Probab=96.30  E-value=0.01  Score=43.36  Aligned_cols=43  Identities=9%  Similarity=0.098  Sum_probs=36.4

Q ss_pred             HHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHHHHHHHh
Q 031271          118 PEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQMKTEKRR  161 (162)
Q Consensus       118 ~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~~l~~~~  161 (162)
                      ...++++|| .++||++++.||+.+..+.|. +.+.|.+.|++.+
T Consensus       166 ~~~a~~~gv-~g~Pt~~i~~~G~~~~~~~G~~~~~~l~~~l~~~~  209 (216)
T 2in3_A          166 FQRVAQWGI-SGFPALVVESGTDRYLITTGYRPIEALRQLLDTWL  209 (216)
T ss_dssp             HHHHHHTTC-CSSSEEEEEETTEEEEEESSCCCHHHHHHHHHHHH
T ss_pred             HHHHHHcCC-cccceEEEEECCEEEEeccCCCCHHHHHHHHHHHH
Confidence            356788999 999999999999987778898 7899999888754

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=96.13  E-value=0.012  Score=49.80  Aligned_cols=57  Identities=25%  Similarity=0.461  Sum_probs=40.3

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCc---HH----HHHhcCCCCCccEEEEEcCCeEEE
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWL---PE----AAKAFDLIDVLPTFVLVKRGKEID  143 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~---~~----l~~~~~i~~~~Ptiv~~~~Gk~i~  143 (162)
                      ++.|+.+||++|.++...|.+.     ++.|-.+|++..   ++    +.+..+. ..+|.++  -+|+.+.
T Consensus        20 v~vy~~~~Cp~C~~~k~~L~~~-----~i~~~~~dv~~~~~~~~~~~~l~~~~g~-~tvP~v~--i~g~~ig   83 (598)
T 2x8g_A           20 VILFSKTTCPYCKKVKDVLAEA-----KIKHATIELDQLSNGSAIQKCLASFSKI-ETVPQMF--VRGKFIG   83 (598)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT-----TCCCEEEEGGGSTTHHHHHHHTHHHHSC-CCSCEEE--ETTEEEE
T ss_pred             EEEEECCCChhHHHHHHHHHHC-----CCCcEEEEcccCcchHHHHHHHHHHhCC-ceeCEEE--ECCEEEE
Confidence            5779999999999999988864     344555666532   33    3445788 8999874  4787654

>1t4y_A Adaptive-response sensory-kinase SASA; alpha/beta protein, thioredoxin fold, transferase; NMR {Synechococcus elongatus} SCOP: c.47.1.15 PDB: 1t4z_A

Probab=96.10  E-value=0.12  Score=34.08  Aligned_cols=79  Identities=18%  Similarity=0.194  Sum_probs=62.2

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcC-C--cEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCCC-HHHHH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYT-D--VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAK-KDELQ  154 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~-~--v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~~-~~~l~  154 (162)
                      -+.|.+..-+.+......+.++-+.+. +  +.+-.||+.++|+++..+++ ..+||++-... ..+.++.|.+ ..+|+
T Consensus        14 ~lLyvag~tp~S~~ai~nL~~i~e~~l~~~~y~LeVIDv~eqPeLAE~~~I-vATPTLIK~~P-~P~rriiGd~i~~ql~   91 (105)
T 1t4y_A           14 LLQLFVDTRPLSQHIVQRVKNILAAVEATVPISLQVINVADQPQLVEYYRL-VVTPALVKIGP-GSRQVLSGIDLTDQLA   91 (105)
T ss_dssp             EEEEEECSCHHHHHHHHHHHHHHHHHCCSSCEEEEEEETTTCHHHHHHTTC-CSSSEEEEEES-SSCEEEESSCHHHHHH
T ss_pred             heeeEeCCCccHHHHHHHHHHHHHHhccCCceEEEEeecccCHHHHhHcCe-eeccHhhccCC-CCceEEeChHHHHHHH
Confidence            345667778999988888888876654 3  88899999999999999999 99999886522 4456777886 67788


Q ss_pred             HHHHH
Q 031271          155 MKTEK  159 (162)
Q Consensus       155 ~~l~~  159 (162)
                      .|.-+
T Consensus        92 ~wwpr   96 (105)
T 1t4y_A           92 NQLPQ   96 (105)
T ss_dssp             HHHHH
T ss_pred             HHhHH
Confidence            87654

>3tdg_A DSBG, putative uncharacterized protein; thioredoxin fold, reductase, oxidoreductase; HET: P6G; 2.10A {Helicobacter pylori}

Probab=94.81  E-value=0.026  Score=43.61  Aligned_cols=36  Identities=14%  Similarity=0.280  Sum_probs=27.8

Q ss_pred             ceEEEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEE
Q 031271           76 LKVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKI  112 (162)
Q Consensus        76 k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~v  112 (162)
                      +.+++.|+-+.||+|+++.+.+++..+. ..++++.+
T Consensus       148 k~~I~vFtDp~CPYCkkl~~~l~~~l~~-~~Vr~i~~  183 (273)
T 3tdg_A          148 DKILYIVSDPMCPHCQKELTKLRDHLKE-NTVRMVVV  183 (273)
T ss_dssp             TCEEEEEECTTCHHHHHHHHTHHHHHHH-CEEEEEEC
T ss_pred             CeEEEEEECcCChhHHHHHHHHHHHhhC-CcEEEEEe
Confidence            5569999999999999999999866554 34555544

>3gn3_A Putative protein-disulfide isomerase; MCSG, PSI, structural GEN protein structure initiative, midwest center for structural genomics; 2.50A {Pseudomonas syringae PV}

Probab=94.39  E-value=0.053  Score=39.04  Aligned_cols=38  Identities=13%  Similarity=-0.051  Sum_probs=29.2

Q ss_pred             ceEEEEEecCCChhhhhhhHHHHHHHHhc-CC-cEEEEEE
Q 031271           76 LKVVIYYTAAWCGPCKFIEPYVKDFAAMY-TD-VQFIKID  113 (162)
Q Consensus        76 k~vvv~F~a~wC~~C~~~~~~l~~~~~~~-~~-v~f~~vd  113 (162)
                      +.+|+.|....||+|+++.+.+.++.+++ ++ +.|+..+
T Consensus        15 ~vtiv~f~D~~Cp~C~~~~~~~~~~l~~~~~g~v~~v~r~   54 (182)
T 3gn3_A           15 PRLFEVFLEPTCPFSVKAFFKLDDLLAQAGEDNVTVRIRL   54 (182)
T ss_dssp             SEEEEEEECTTCHHHHHHHTTHHHHHHHHCTTTEEEEEEE
T ss_pred             CEEEEEEECCCCHhHHHHHHHHHHHHHHhCCCCEEEEEEE
Confidence            44588888999999999999887766665 64 6666554

>3kgk_A Arsenical resistance operon trans-acting represso; alpha+beta, chaperone, DNA-binding, RE transcription, transcription regulation; 1.40A {Escherichia coli} PDB: 3mwh_A

Probab=94.25  E-value=0.28  Score=32.58  Aligned_cols=50  Identities=22%  Similarity=0.215  Sum_probs=40.7

Q ss_pred             CcEEEEEECCCcH----------HHHHhcCCCCCccEEEEEcCCeEEEEEcCCCHHHHHHHHH
Q 031271          106 DVQFIKIDVDWLP----------EAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQMKTE  158 (162)
Q Consensus       106 ~v~f~~vd~d~~~----------~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~~~~~l~~~l~  158 (162)
                      ++.+.+.++.++|          ++.+++|+ ..+|.+++  ||+++..-.=.+.++|.+|+.
T Consensus        40 Gi~V~RyNL~~~P~aF~~N~~V~~~L~~~G~-~~LP~~~V--DGevv~~G~yPt~eEl~~~lg   99 (110)
T 3kgk_A           40 GVQIERFNLAQQPMSFVQNEKVKAFIEASGA-EGLPLLLL--DGETVMAGRYPKRAELARWFG   99 (110)
T ss_dssp             TCCEEEEETTTCTTHHHHSHHHHHHHHHHCG-GGCCEEEE--TTEEEEESSCCCHHHHHHHHT
T ss_pred             CCeEEEEccccChHHHhcCHHHHHHHHHcCc-ccCCEEEE--CCEEEEeccCCCHHHHHHHhC
Confidence            6999999999877          57788999 99998876  999886532238999999874

>1z3e_A Regulatory protein SPX; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: c.47.1.12 PDB: 3gfk_A 3ihq_A

Probab=94.22  E-value=0.036  Score=37.86  Aligned_cols=34  Identities=18%  Similarity=0.507  Sum_probs=27.2

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCc
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWL  117 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~  117 (162)
                      +..|+.++|+.|++....|++.     ++.|-.+|++..
T Consensus         3 i~lY~~~~C~~C~ka~~~L~~~-----gi~y~~~di~~~   36 (132)
T 1z3e_A            3 VTLYTSPSCTSCRKARAWLEEH-----EIPFVERNIFSE   36 (132)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT-----TCCEEEEETTTS
T ss_pred             EEEEeCCCChHHHHHHHHHHHc-----CCceEEEEccCC
Confidence            5568899999999999888873     677777788754

>2imf_A HCCA isomerase, 2-hydroxychromene-2-carboxylate isomerase; glutathione, KGST, kappa GST, transferase; HET: GSH TOM CXS; 1.30A {Pseudomonas putida} PDB: 2ime_A* 2imd_A*

Probab=94.18  E-value=0.3  Score=35.21  Aligned_cols=27  Identities=15%  Similarity=0.127  Sum_probs=23.8

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcC
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYT  105 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~  105 (162)
                      |.+|+-.-||.|....+.|+++.+.++
T Consensus         3 I~~~~D~~CP~cy~~~~~l~~~~~~~~   29 (203)
T 2imf_A            3 VDFYFDFLSPFSYLANQRLSKLAQDYG   29 (203)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHHC
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHcC
Confidence            677888899999999999999988874

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*

Probab=93.98  E-value=0.24  Score=41.48  Aligned_cols=75  Identities=8%  Similarity=0.023  Sum_probs=45.3

Q ss_pred             CceEEEEEecCCChhhhhhhHHHHHHHHhc---CCcEEEEEECCCcHHHHHhcCCCCCccEEEEE-cCCeEEEEEcCC-C
Q 031271           75 VLKVVIYYTAAWCGPCKFIEPYVKDFAAMY---TDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLV-KRGKEIDRVVGA-K  149 (162)
Q Consensus        75 ~k~vvv~F~a~wC~~C~~~~~~l~~~~~~~---~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~-~~Gk~i~~~~g~-~  149 (162)
                      .++++|.|....       .....++...+   +++.+. ...+.+.+++++||| ..+|+++++ ++|+....-... .
T Consensus       157 ~~~vallF~~~~-------s~~~~~~~ldl~~~~~v~v~-~v~~~~~~l~~kfgV-~~~Pslvl~~~nGk~~~~~v~~~~  227 (519)
T 3t58_A          157 ADYLALVFERED-------SYLGREVTLDLSQYHAVAVR-RVLNTESDLVNKFGV-TDFPSCYLLLRNGSVSRVPVLVES  227 (519)
T ss_dssp             CSEEEEEEECTT-------CCHHHHHHHHTTTCTTEEEE-EEETTCHHHHHHHTC-CCSSEEEEEETTSCEEECCCSSCS
T ss_pred             CCeEEEEecCCc-------hHHHHHHHHHhhccCCeeEE-EecCchHHHHHHcCC-CCCCeEEEEeCCCceeeccccccc
Confidence            355678887654       11334444444   345554 445667799999999 999999988 566654332233 3


Q ss_pred             HHHHHHHHH
Q 031271          150 KDELQMKTE  158 (162)
Q Consensus       150 ~~~l~~~l~  158 (162)
                      .+.+..+|+
T Consensus       228 r~~~~~~l~  236 (519)
T 3t58_A          228 RSFYTSYLR  236 (519)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHH
Confidence            444444444

>3ktb_A Arsenical resistance operon trans-acting represso; alpha-beta-alpha sandwich, helix-turn-helix, structural GENO PSI-2; 2.10A {Bacteroides vulgatus}

Probab=93.96  E-value=0.21  Score=32.93  Aligned_cols=51  Identities=12%  Similarity=0.121  Sum_probs=40.5

Q ss_pred             CCcEEEEEECCCcH----------HHHHhcCCCCCccEEEEEcCCeEEEEEcCCCHHHHHHHHH
Q 031271          105 TDVQFIKIDVDWLP----------EAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQMKTE  158 (162)
Q Consensus       105 ~~v~f~~vd~d~~~----------~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~~~~~l~~~l~  158 (162)
                      .++.+.+.++.++|          ++.+++|+ ..+|.+++  ||+++..-.=++.++|.+|+.
T Consensus        42 ~Gi~V~RyNL~~~P~~F~~N~~V~~~L~~~G~-~~LP~~~V--DGevv~~G~yPt~eEl~~~lg  102 (106)
T 3ktb_A           42 QGIIVTRHNLRDEPQVYVSNKTVNDFLQKHGA-DALPITLV--DGEIAVSQTYPTTKQMSEWTG  102 (106)
T ss_dssp             TTCCCEEEETTTCTTHHHHSHHHHHHHHTTCG-GGCSEEEE--TTEEEECSSCCCHHHHHHHHC
T ss_pred             CCCEEEEEccccChHHHhcCHHHHHHHHHcCc-ccCCEEEE--CCEEEEeccCCCHHHHHHHhC
Confidence            47999999998876          57778999 99998876  998886422238999998873

>3l78_A Regulatory protein SPX; transcription, transcriptional factor, disulfide bond, redox-active center, transcription regulati; 1.90A {Streptococcus mutans} SCOP: c.47.1.12

Probab=93.72  E-value=0.063  Score=36.07  Aligned_cols=34  Identities=18%  Similarity=0.391  Sum_probs=27.2

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCc
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWL  117 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~  117 (162)
                      +..|+.++|+.|++....|++     .++.|-.+|+.+.
T Consensus         2 i~iY~~~~C~~c~ka~~~L~~-----~gi~~~~~di~~~   35 (120)
T 3l78_A            2 VTLFLSPSCTSCRKARAWLNR-----HDVVFQEHNIMTS   35 (120)
T ss_dssp             EEEEECSSCHHHHHHHHHHHH-----TTCCEEEEETTTS
T ss_pred             EEEEeCCCCHHHHHHHHHHHH-----cCCCeEEEecccC
Confidence            456889999999999988876     3677778888644

>3fz4_A Putative arsenate reductase; APC61768, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.38A {Streptococcus mutans UA159} SCOP: c.47.1.0

Probab=92.63  E-value=0.12  Score=34.75  Aligned_cols=34  Identities=18%  Similarity=0.426  Sum_probs=27.2

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCc
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWL  117 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~  117 (162)
                      +..|+.++|+.|++....|++-     ++.|-.+|+.+.
T Consensus         5 i~iY~~~~C~~c~ka~~~L~~~-----gi~~~~~di~~~   38 (120)
T 3fz4_A            5 LTFYEYPKCSTCRRAKAELDDL-----AWDYDAIDIKKN   38 (120)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHH-----TCCEEEEETTTS
T ss_pred             EEEEeCCCChHHHHHHHHHHHc-----CCceEEEEeccC
Confidence            5668899999999999888763     677777887654

>3gn3_A Putative protein-disulfide isomerase; MCSG, PSI, structural GEN protein structure initiative, midwest center for structural genomics; 2.50A {Pseudomonas syringae PV}

Probab=92.05  E-value=0.086  Score=37.91  Aligned_cols=36  Identities=17%  Similarity=0.219  Sum_probs=29.4

Q ss_pred             HHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHHHH
Q 031271          119 EAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQMKT  157 (162)
Q Consensus       119 ~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~~l  157 (162)
                      ..++++|| .++||+++  ||+.+..+.|. +.+++.++|
T Consensus       145 ~~a~~~GV-~gtPtf~i--ng~~~~~~s~~~~~e~w~~~l  181 (182)
T 3gn3_A          145 KYARQNGI-HVSPTFMI--NGLVQPGMSSGDPVSKWVSDI  181 (182)
T ss_dssp             HHHHHHTC-CSSSEEEE--TTEECTTCCTTSCHHHHHHHH
T ss_pred             HHHHHCCC-CccCEEEE--CCEEccCCCCCCCHHHHHHHh
Confidence            46788999 99999987  99887655665 888888876

>2g2q_A Glutaredoxin-2; thioredoxin-fold, oxidoreductase, poxvirus; 2.50A {Vaccinia virus}

Probab=91.95  E-value=0.34  Score=32.50  Aligned_cols=36  Identities=17%  Similarity=0.577  Sum_probs=28.7

Q ss_pred             ceEEEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEEC
Q 031271           76 LKVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDV  114 (162)
Q Consensus        76 k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~  114 (162)
                      |.+++.|.-|-|+-|......+.++..   ++.+++||+
T Consensus         2 K~tLILfGKP~C~vCe~~s~~l~~led---eY~ilrVNI   37 (124)
T 2g2q_A            2 KNVLIIFGKPYCSICENVSDAVEELKS---EYDILHVDI   37 (124)
T ss_dssp             CEEEEEEECTTCHHHHHHHHHHHTTTT---TEEEEEEEC
T ss_pred             CceEEEeCCCccHHHHHHHHHHHHhhc---cccEEEEEe
Confidence            456999999999999998888855433   378888887

>3gkx_A Putative ARSC family related protein; ARSC family protein, structural genomi 2, protein structure initiative; 2.20A {Bacteroides fragilis} SCOP: c.47.1.0

Probab=91.62  E-value=0.11  Score=34.94  Aligned_cols=34  Identities=6%  Similarity=0.274  Sum_probs=26.7

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCc
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWL  117 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~  117 (162)
                      +..|+.++|+.|++....|++     .++.|-.+|+.+.
T Consensus         6 i~iY~~p~C~~c~ka~~~L~~-----~gi~~~~~di~~~   39 (120)
T 3gkx_A            6 TLFLQYPACSTCQKAKKWLIE-----NNIEYTNRLIVDD   39 (120)
T ss_dssp             CEEEECTTCHHHHHHHHHHHH-----TTCCCEEEETTTT
T ss_pred             EEEEECCCChHHHHHHHHHHH-----cCCceEEEecccC
Confidence            566889999999999988876     3677777777543

>3c7m_A Thiol:disulfide interchange protein DSBA-like; redox protein, periplasm, redox-active center, oxidoreductase; HET: PGE; 1.55A {Escherichia coli} PDB: 3l9u_A

Probab=91.18  E-value=0.11  Score=36.92  Aligned_cols=40  Identities=13%  Similarity=0.163  Sum_probs=30.5

Q ss_pred             HHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHHHHHHHh
Q 031271          119 EAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQMKTEKRR  161 (162)
Q Consensus       119 ~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~~l~~~~  161 (162)
                      ..++++|| .++||+++  ||+......|. +.+.|.+.|++.+
T Consensus       153 ~~a~~~gv-~gtPt~~i--ng~~~~~~~g~~~~~~l~~~i~~~l  193 (195)
T 3c7m_A          153 ASYDVAKI-QGVPAYVV--NGKYLIYTKSIKSIDAMADLIRELA  193 (195)
T ss_dssp             GHHHHHHH-HCSSEEEE--TTTEEECGGGCCCHHHHHHHHHHHH
T ss_pred             HHHHHcCC-CccCEEEE--CCEEEeccCCCCCHHHHHHHHHHHH
Confidence            46778899 99999876  78754323366 8999999998765

>1s3c_A Arsenate reductase; ARSC, arsenite, oxidoreductase; 1.25A {Escherichia coli} PDB: 1sd9_A 1i9d_A 1j9b_A 1sd8_A 1jzw_A* 1sk1_A* 1sjz_A* 1sk0_A* 1sk2_A 1s3d_A

Probab=89.74  E-value=0.21  Score=34.51  Aligned_cols=33  Identities=9%  Similarity=0.038  Sum_probs=26.2

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCC
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDW  116 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~  116 (162)
                      +..|+.++|+.|++....|++     .++.|-.+|+..
T Consensus         4 itiY~~p~C~~crkak~~L~~-----~gi~~~~idi~~   36 (141)
T 1s3c_A            4 ITIYHNPASGTSRNTLEMIRN-----SGTEPTIILYLE   36 (141)
T ss_dssp             CEEECCTTCHHHHHHHHHHHH-----TTCCCEEECTTT
T ss_pred             EEEEECCCChHHHHHHHHHHH-----cCCCEEEEECCC
Confidence            456889999999999988877     367777777764

>3rdw_A Putative arsenate reductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 2.20A {Yersinia pestis}

Probab=89.32  E-value=0.19  Score=33.74  Aligned_cols=34  Identities=12%  Similarity=0.050  Sum_probs=26.2

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCc
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWL  117 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~  117 (162)
                      +..|+.++|+.|++....|++     .++.|-.+|+.+.
T Consensus         7 i~iY~~p~C~~c~ka~~~L~~-----~gi~~~~~di~~~   40 (121)
T 3rdw_A            7 VTIYHNPRCSKSRETLALVEQ-----QGITPQVVLYLET   40 (121)
T ss_dssp             CEEECCTTCHHHHHHHHHHHT-----TTCCCEEECTTTS
T ss_pred             EEEEECCCCHHHHHHHHHHHH-----cCCCcEEEeeccC
Confidence            456889999999999888875     3566777777643

>3gl5_A Putative DSBA oxidoreductase SCO1869; probable DSBA oxidoreductase structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Streptomyces coelicolor A3}

Probab=86.11  E-value=1.3  Score=32.90  Aligned_cols=38  Identities=21%  Similarity=0.227  Sum_probs=29.5

Q ss_pred             HHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHHHHHHHh
Q 031271          119 EAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQMKTEKRR  161 (162)
Q Consensus       119 ~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~~l~~~~  161 (162)
                      ..+..+|| .++|++++  ||+.  .+.|. +.+.|.+.|++.+
T Consensus       174 ~~a~~~Gv-~GvPtfvv--~g~~--~v~Ga~~~e~~~~~i~~~~  212 (239)
T 3gl5_A          174 REAAQLGA-TGVPFFVL--DRAY--GVSGAQPAEVFTQALTQAW  212 (239)
T ss_dssp             HHHHHTTC-CSSSEEEE--TTTE--EEESSCCHHHHHHHHHHHH
T ss_pred             HHHHHCCC-CeeCeEEE--CCcE--eecCCCCHHHHHHHHHHHH
Confidence            45678999 99999987  7763  23577 8999999888754

>1un2_A DSBA, thiol-disulfide interchange protein; disulfide oxidoreductase, oxidoreductase, protein disulfide isomerase, protein folding, thioredoxin; 2.4A {Escherichia coli} SCOP: c.47.1.13

Probab=83.82  E-value=0.67  Score=33.56  Aligned_cols=30  Identities=23%  Similarity=0.222  Sum_probs=21.3

Q ss_pred             CcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC
Q 031271          116 WLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA  148 (162)
Q Consensus       116 ~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~  148 (162)
                      +....++.+|+ .++|++++  ||+......+.
T Consensus        38 ~~~~~a~~~gi-~gvP~fvi--ngk~~~~~~~~   67 (197)
T 1un2_A           38 QQEKAAADVQL-RGVPAMFV--NGKYQLNPQGM   67 (197)
T ss_dssp             HHHHHHHHTTC-CSSSEEEE--TTTEEECGGGS
T ss_pred             HHHHHHHHcCC-CcCCEEEE--cceEecCcccc
Confidence            34457889999 99999976  88765432333

>3fz5_A Possible 2-hydroxychromene-2-carboxylate isomeras; 2-hydroxychromene-2-carboxylate ISO structural genomics, PSI-2; HET: MSE GSH PGE; 2.40A {Rhodobacter sphaeroides 2}

Probab=82.00  E-value=1.8  Score=31.09  Aligned_cols=35  Identities=17%  Similarity=0.115  Sum_probs=27.8

Q ss_pred             HHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHHHHHH
Q 031271          119 EAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQMKTEK  159 (162)
Q Consensus       119 ~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~~l~~  159 (162)
                      ..+..+|| .++||+++  ||+   .+.|. ..+.|.++|.+
T Consensus       164 ~~a~~~Gv-~GvPtfvv--~g~---~~~G~~~~~~l~~~l~~  199 (202)
T 3fz5_A          164 EDAVARGI-FGSPFFLV--DDE---PFWGWDRMEMMAEWIRT  199 (202)
T ss_dssp             HHHHHTTC-CSSSEEEE--TTE---EEESGGGHHHHHHHHHT
T ss_pred             HHHHHCCC-CcCCEEEE--CCE---EEecCCCHHHHHHHHhc
Confidence            45678999 99999988  786   35587 68888888865

>3ir4_A Glutaredoxin 2; glutathione, IDP00895, structural genomics, for structural genomics of infectious diseases, csgid, oxidoreductase; HET: MSE GSH; 1.20A {Salmonella enterica subsp} PDB: 1g7o_A

Probab=81.85  E-value=4.7  Score=28.65  Aligned_cols=59  Identities=10%  Similarity=0.107  Sum_probs=41.2

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEE
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEI  142 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i  142 (162)
                      +..|+.++|+.|.+..-.++...-   .+..+.++........+.... ..+|++.. .+|..+
T Consensus         4 ~~Ly~~~~sp~~~~v~~~l~~~gi---~~~~~~v~~~~~~~~~~~~p~-~~vP~l~~-~~g~~l   62 (218)
T 3ir4_A            4 MKLYIYDHCPFCVKARMIFGLKNI---PVELNVLQNDDEATPTRMIGQ-KMVPILQK-DDSRYL   62 (218)
T ss_dssp             CEEEECTTCHHHHHHHHHHHHHTC---CCEEEECCTTCCHHHHHHHSS-SCSCEEEC-TTSCEE
T ss_pred             EEEEcCCCCchHHHHHHHHHHcCC---ceEEEECCCcchhhhhhcCCC-ceeeeEEE-eCCeEe
Confidence            456788999999998877765422   266667777666555666677 89998862 566654

>1wwj_A Circadian clock protein KAIB; 1.90A {Synechocystis SP} PDB: 1r5p_A 2qke_A 1vgl_A

Probab=81.20  E-value=0.29  Score=32.19  Aligned_cols=55  Identities=18%  Similarity=0.087  Sum_probs=44.9

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhc-CC-cEEEEEECCCcHHHHHhcCCCCCccEEE
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMY-TD-VQFIKIDVDWLPEAAKAFDLIDVLPTFV  134 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~-~~-v~f~~vd~d~~~~l~~~~~i~~~~Ptiv  134 (162)
                      +..|-+..-+.+.+....+.++-+.+ ++ +.+-.||+.++|+++..++| ..+||++
T Consensus        10 L~LyVaG~tp~S~~ai~nL~~i~e~~l~~~y~LeVIDv~~~PelAe~~~I-vAtPTLi   66 (105)
T 1wwj_A           10 LKLYVAGNTPNSVRALKMLKNILEQEFQGVYALKVIDVLKNPQLAEEDKI-LATPTLA   66 (105)
T ss_dssp             EEEEESSCCHHHHHHHHHHHHHHHHHHTTSEEEEEEETTTCCSCCTTCEE-ECHHHHG
T ss_pred             EEEEEeCCCchHHHHHHHHHHHHHHhcCCCeEEEEEEcccCHhHHhHCCe-EEechhh
Confidence            55566668888998888888876544 44 88889999999999999999 9999875

>3f0i_A Arsenate reductase; structural genomics, IDP01300, vibrio CH center for structural genomics of infectious diseases, CSGI oxidoreductase; HET: MSE; 1.88A {Vibrio cholerae}

Probab=80.05  E-value=0.98  Score=30.05  Aligned_cols=32  Identities=13%  Similarity=0.180  Sum_probs=24.4

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECC
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVD  115 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d  115 (162)
                      +..|+.++|+.|++....|++     .++.|-.+|+.
T Consensus         6 i~iY~~p~C~~c~ka~~~L~~-----~gi~~~~~di~   37 (119)
T 3f0i_A            6 VVIYHNPKCSKSRETLALLEN-----QGIAPQVIKYL   37 (119)
T ss_dssp             CEEECCTTCHHHHHHHHHHHH-----TTCCCEEECHH
T ss_pred             EEEEECCCChHHHHHHHHHHH-----cCCceEEEEec
Confidence            466889999999999988876     25656666653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	162
d1gh2a_	107	c.47.1.1 (A:) Thioredoxin-like protein, N-terminal	6e-12
d2trcp_	217	c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [	1e-11
d1ti3a_	113	c.47.1.1 (A:) Thioredoxin {European aspen (Populus	5e-11
d2ifqa1	105	c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapien	5e-11
d1ep7a_	112	c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardt	2e-10
d1woua_	119	c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxi	2e-10
d1f9ma_	112	c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia olera	3e-10
d1nw2a_	105	c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidoc	7e-10
d2hfda1	132	c.47.1.20 (A:1-132) Hydrogenase-1 operon protein H	3e-09
d1syra_	103	c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plas	8e-09
d2es7a1	119	c.47.1.20 (A:7-125) Hydrogenase-1 operon protein H	8e-09
d1xfla_	114	c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsi	1e-08
d1r26a_	113	c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [Tax	1e-08
d1thxa_	108	c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120	6e-08
d2trxa_	108	c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId	3e-07
d1xwaa_	111	c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila m	1e-06
d1wjka_	100	c.47.1.1 (A:) Thioredoxin-like structure containin	2e-06
d1qgva_	137	c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human	6e-06
d1dbya_	107	c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardt	9e-06
d1a8la2	107	c.47.1.2 (A:120-226) Protein disulfide isomerase,	1e-05
d1z6na1	166	c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Ps	2e-05
d1nhoa_	85	c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-lik	2e-05
d2b5ea1	140	c.47.1.2 (A:365-504) Protein disulfide isomerase,	3e-05
d1zmaa1	115	c.47.1.1 (A:1-115) Bacterocin transport accessory	3e-05
d1fo5a_	85	c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-lik	3e-05
d2djja1	116	c.47.1.2 (A:6-121) Protein disulfide isomerase, PD	6e-05
d1meka_	120	c.47.1.2 (A:) Protein disulfide isomerase, PDI {Hu	1e-04
d1hyua4	96	c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase	5e-04
d2c0ga2	122	c.47.1.7 (A:1024-1145) Windbeutel, N-terminal doma	5e-04
d1sena_	135	c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19	0.001
d1fb6a_	104	c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia olera	0.003
d1i5ga_	144	c.47.1.10 (A:) Tryparedoxin II {Crithidia fascicul	0.004

>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.7 bits (136), Expect = 6e-12
 Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 1/82 (1%)

Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVK 137
            V+ +T   CGPC  I P     +  Y    F+++DV      A   + I   PTF   +
Sbjct: 24  AVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQCQGTAATNN-ISATPTFQFFR 82

Query: 138 RGKEIDRVVGAKKDELQMKTEK 159
               ID+  GA    L+ K ++
Sbjct: 83  NKVRIDQYQGADAVGLEEKIKQ 104

>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 217

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Phosducin
domain: Phosducin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 58.1 bits (140), Expect = 1e-11
 Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 2/73 (2%)

Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVK 137
           +V+         C  +   ++  AA Y  V+F KI         + F   DVLPT ++ K
Sbjct: 123 IVVNIYEDGVRGCDALNSSLECLAAEYPMVKFCKIRASNTGAGDR-FS-SDVLPTLLVYK 180

Query: 138 RGKEIDRVVGAKK 150
            G+ I   +   +
Sbjct: 181 GGELISNFISVAE 193

>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]} Length = 113

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]

 Score = 54.8 bits (131), Expect = 5e-11
 Identities = 33/82 (40%), Positives = 52/82 (63%), Gaps = 1/82 (1%)

Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVK 137
           +V+ +TA+WC PCK I P   + A  + +V F+K+DVD L   A+ ++ ++ +PTF+ +K
Sbjct: 29  IVVDFTASWCPPCKMIAPIFAELAKKFPNVTFLKVDVDELKAVAEEWN-VEAMPTFIFLK 87

Query: 138 RGKEIDRVVGAKKDELQMKTEK 159
            GK +D+ VGA KD L     K
Sbjct: 88  DGKLVDKTVGADKDGLPTLVAK 109

>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.4 bits (130), Expect = 5e-11
 Identities = 27/82 (32%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVK 137
           VV+ ++A WCGPCK I+P+    +  Y++V F+++DVD   + A   + +  +PTF   K
Sbjct: 23  VVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECE-VKCMPTFQFFK 81

Query: 138 RGKEIDRVVGAKKDELQMKTEK 159
           +G+++    GA K++L+    +
Sbjct: 82  KGQKVGEFSGANKEKLEATINE 103

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]} Length = 112

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

 Score = 52.9 bits (126), Expect = 2e-10
 Identities = 26/82 (31%), Positives = 38/82 (46%)

Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVK 137
           +V+ +TA WCGPCK I P  +  +  Y               A      I  +PTF + K
Sbjct: 27  IVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEAAGITAMPTFHVYK 86

Query: 138 RGKEIDRVVGAKKDELQMKTEK 159
            G + D +VGA +D+L+    K
Sbjct: 87  DGVKADDLVGASQDKLKALVAK 108

>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]} Length = 119

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Txnl5-like
domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.3 bits (127), Expect = 2e-10
 Identities = 14/101 (13%), Positives = 34/101 (33%), Gaps = 7/101 (6%)

Query: 62  VLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEA 120
            +  ++G  +  +          +WC  C   EP V++     ++   FI   V   P  
Sbjct: 15  AVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGCVFIYCQVGEKPYW 74

Query: 121 AKAF------DLIDVLPTFVLVKRGKEIDRVVGAKKDELQM 155
                       +  +PT +     +++      + + ++M
Sbjct: 75  KDPNNDFRKNLKVTAVPTLLKYGTPQKLVESECLQANLVEM 115

>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]} Length = 112

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]

 Score = 52.5 bits (125), Expect = 3e-10
 Identities = 29/85 (34%), Positives = 43/85 (50%)

Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVK 137
           VV+     WCGPCK + P  +  A  Y DV F+K+D +   +       I V+PTF ++K
Sbjct: 28  VVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRVVPTFKILK 87

Query: 138 RGKEIDRVVGAKKDELQMKTEKRRN 162
               +  V GAK D+L    +  R+
Sbjct: 88  ENSVVGEVTGAKYDKLLEAIQAARS 112

>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]} Length = 105

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]

 Score = 51.3 bits (122), Expect = 7e-10
 Identities = 28/84 (33%), Positives = 51/84 (60%), Gaps = 3/84 (3%)

Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLV 136
           V++ + AAWCGPC+ + P +++FA  + D V   K++VD  PE    F  I  +PT +L 
Sbjct: 20  VLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFG-IMSIPTLILF 78

Query: 137 KRGKEIDRVVGAK-KDELQMKTEK 159
           K G+ + +++G + K++L+ +   
Sbjct: 79  KGGEPVKQLIGYQPKEQLEAQLAD 102

>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]} Length = 132

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Escherichia coli [TaxId: 562]

 Score = 50.0 bits (119), Expect = 3e-09
 Identities = 9/79 (11%), Positives = 20/79 (25%), Gaps = 4/79 (5%)

Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQ--FIKIDVDWLPEAAKAFDLIDVLPTFVL 135
           V++                + +    + D        D++        F  +   P  ++
Sbjct: 39  VLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFG-VFRFPATLV 97

Query: 136 VKRGKEIDRVVGAK-KDEL 153
              G     + G     EL
Sbjct: 98  FTGGNYRGVLNGIHPWAEL 116

>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 103

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

 Score = 48.7 bits (115), Expect = 8e-09
 Identities = 31/82 (37%), Positives = 49/82 (59%), Gaps = 1/82 (1%)

Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVK 137
           V++ + A WCGPCK I P+ ++ +  YT + FIK+DVD + E  +  + I  +PTF + K
Sbjct: 21  VIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDEVSEVTEKEN-ITSMPTFKVYK 79

Query: 138 RGKEIDRVVGAKKDELQMKTEK 159
            G  +D ++GA    L+   EK
Sbjct: 80  NGSSVDTLLGANDSALKQLIEK 101

>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]} Length = 119

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Salmonella typhimurium [TaxId: 90371]

 Score = 48.8 bits (116), Expect = 8e-09
 Identities = 8/79 (10%), Positives = 21/79 (26%), Gaps = 4/79 (5%)

Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQ--FIKIDVDWLPEAAKAFDLIDVLPTFVL 135
           +++                + +    +          D++        F+ +   P  ++
Sbjct: 33  ILLSSDPRRTPEVSDNPVMIAELLREFPQFDWQVAVADLEQSEAIGDRFN-VRRFPATLV 91

Query: 136 VKRGKEIDRVVGAK-KDEL 153
              GK    + G     EL
Sbjct: 92  FTDGKLRGALSGIHPWAEL 110

>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 114

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 48.7 bits (115), Expect = 1e-08
 Identities = 40/82 (48%), Positives = 54/82 (65%), Gaps = 1/82 (1%)

Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVK 137
           VV+ +TA+WCGPC+FI P+  D A    +V F+K+D D L   A  +  I  +PTF+ +K
Sbjct: 31  VVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKVDTDELKSVASDWA-IQAMPTFMFLK 89

Query: 138 RGKEIDRVVGAKKDELQMKTEK 159
            GK +D+VVGAKKDELQ    K
Sbjct: 90  EGKILDKVVGAKKDELQSTIAK 111

>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]} Length = 113

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Trypanosoma brucei [TaxId: 5691]

 Score = 48.3 bits (114), Expect = 1e-08
 Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 1/82 (1%)

Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVK 137
            V ++TA WCGPCK IE  ++  A  +  V+F K+D D   E       +  LPTF++ +
Sbjct: 29  TVAWFTAVWCGPCKTIERPMEKIAYEFPTVKFAKVDADNNSEIVSKCR-VLQLPTFIIAR 87

Query: 138 RGKEIDRVVGAKKDELQMKTEK 159
            GK +  V+GA    L+ K   
Sbjct: 88  SGKMLGHVIGANPGMLRQKLRD 109

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]} Length = 108

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

 Score = 46.3 bits (109), Expect = 6e-08
 Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 3/84 (3%)

Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQ-FIKIDVDWLPEAAKAFDLIDVLPTFVLV 136
           V++Y+ A+WCGPC+ + P +   A  Y+D    +K+++D  P   K +  ++ +P   LV
Sbjct: 23  VLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPTTVKKYK-VEGVPALRLV 81

Query: 137 KRGKEIDRVVGAK-KDELQMKTEK 159
           K  + +D   G   KD+L    + 
Sbjct: 82  KGEQILDSTEGVISKDKLLSFLDT 105

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]} Length = 108

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

 Score = 44.4 bits (104), Expect = 3e-07
 Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 3/84 (3%)

Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAA-MYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLV 136
           +++ + A WCGPCK I P + + A      +   K+++D  P  A  +  I  +PT +L 
Sbjct: 23  ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYG-IRGIPTLLLF 81

Query: 137 KRGKEIDRVVGAK-KDELQMKTEK 159
           K G+     VGA  K +L+   + 
Sbjct: 82  KNGEVAATKVGALSKGQLKEFLDA 105

>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 111

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 43.0 bits (100), Expect = 1e-06
 Identities = 31/105 (29%), Positives = 54/105 (51%), Gaps = 7/105 (6%)

Query: 61  MVLNINDGGNVVFWVLK-----VVIYYTAAWCGPCKFIEPYVKDFAAMY-TDVQFIKIDV 114
           MV  + D  ++   + K     VV+ + A WCGPCK I P + + +  +  +V  +K+DV
Sbjct: 6   MVYQVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDV 65

Query: 115 DWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQMKTEK 159
           D   + A  ++ I  +PTFV +K G +++   GA    L+   + 
Sbjct: 66  DECEDIAMEYN-ISSMPTFVFLKNGVKVEEFAGANAKRLEDVIKA 109

>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]} Length = 100

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like structure containing protein C330018D20Rik
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.7 bits (97), Expect = 2e-06
 Identities = 8/49 (16%), Positives = 20/49 (40%), Gaps = 1/49 (2%)

Query: 76  LKVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAF 124
           L V+  +T A C  C   +  ++ +   +  +Q + I +       + +
Sbjct: 16  LPVLTLFTKAPCPLCDEAKEVLQPYKDRF-ILQEVDITLPENSTWYERY 63

>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]} Length = 137

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: spliceosomal protein U5-15Kd
domain: spliceosomal protein U5-15Kd
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (96), Expect = 6e-06
 Identities = 14/76 (18%), Positives = 29/76 (38%), Gaps = 2/76 (2%)

Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQ-FIKIDVDWLPEAAKAFDLIDVLPTFVLV 136
           VVI +   W   C  ++  +   A    +      +D+  +P+  K ++ +    T +  
Sbjct: 25  VVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYE-LYDPCTVMFF 83

Query: 137 KRGKEIDRVVGAKKDE 152
            R K I   +G   + 
Sbjct: 84  FRNKHIMIDLGTGNNN 99

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]} Length = 107

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

 Score = 40.3 bits (93), Expect = 9e-06
 Identities = 25/84 (29%), Positives = 44/84 (52%), Gaps = 3/84 (3%)

Query: 78  VVIYYTAAWCGPCKFIEPYVKD-FAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLV 136
           V++ + A WCGPC+ I P V +        ++ +K++ D  P  A  +  I  +PT ++ 
Sbjct: 22  VLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVASEYG-IRSIPTIMVF 80

Query: 137 KRGKEIDRVVGAK-KDELQMKTEK 159
           K GK+ + ++GA  K  +    EK
Sbjct: 81  KGGKKCETIIGAVPKATIVQTVEK 104

>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 107

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

 Score = 39.9 bits (92), Expect = 1e-05
 Identities = 13/79 (16%), Positives = 24/79 (30%), Gaps = 4/79 (5%)

Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDL----IDVLPTF 133
            ++ +    C  C         FA   T     KI  D +             +  +P  
Sbjct: 18  RILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPEWADQYNVMAVPKI 77

Query: 134 VLVKRGKEIDRVVGAKKDE 152
           V+   G++     GA  ++
Sbjct: 78  VIQVNGEDRVEFEGAYPEK 96

>d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]} Length = 166

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein PA1234
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 40.3 bits (93), Expect = 2e-05
 Identities = 9/88 (10%), Positives = 26/88 (29%), Gaps = 3/88 (3%)

Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVL---PTFV 134
            ++     WC  C+     +     +  +++   I      +  +    ++ +      V
Sbjct: 57  RLLVAGEMWCPDCQINLAALDFAQRLQPNIELAIISKGRAEDDLRQRLALERIAIPLVLV 116

Query: 135 LVKRGKEIDRVVGAKKDELQMKTEKRRN 162
           L +    + R V   +  L    +    
Sbjct: 117 LDEEFNLLGRFVERPQAVLDGGPQALAA 144

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 85

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 38.9 bits (90), Expect = 2e-05
 Identities = 14/84 (16%), Positives = 27/84 (32%), Gaps = 7/84 (8%)

Query: 78  VVIYYTAAWCGPCKFIEP-YVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLV 136
            +  +T+  C  C        +        +   KID+    E A  +  +  +P   + 
Sbjct: 4   NIEVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDREKAIEYG-LMAVPAIAIN 62

Query: 137 KRGKEIDRVVGAK-KDELQMKTEK 159
              +     VGA  ++EL      
Sbjct: 63  GVVR----FVGAPSREELFEAIND 82

>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 140

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.4 bits (91), Expect = 3e-05
 Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 1/70 (1%)

Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLV 136
           V++ Y A WCG CK + P  ++ A  Y +    + I      E      +I+  PT VL 
Sbjct: 33  VLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTENDVRGVVIEGYPTIVLY 92

Query: 137 KRGKEIDRVV 146
             GK+ + VV
Sbjct: 93  PGGKKSESVV 102

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]} Length = 115

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 39.1 bits (90), Expect = 3e-05
 Identities = 13/83 (15%), Positives = 25/83 (30%), Gaps = 5/83 (6%)

Query: 77  KVVIYYTAAWCGPCKFIEPYVKDFAAMY-TDVQFIKIDVDWLPEAAKA---FDLIDVLPT 132
               +     C  C+     +    A     + FI  +        +A      I  +P 
Sbjct: 28  TATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFINSEEPSQLNDLQAFRSRYGIPTVPG 87

Query: 133 FVLVKRGKEIDRVVGAK-KDELQ 154
           FV +  G+   R   +    E++
Sbjct: 88  FVHITDGQINVRCDSSMSAQEIK 110

>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 85

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MJ0307, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 38.4 bits (88), Expect = 3e-05
 Identities = 15/83 (18%), Positives = 29/83 (34%), Gaps = 5/83 (6%)

Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVK 137
            +  +T+  C  C   +  V++ A    D   ++               I  +PT V+  
Sbjct: 5   KIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQKAMEYGIMAVPTIVING 64

Query: 138 RGKEIDRVVGAK-KDELQMKTEK 159
             +     +GA  K+ L    +K
Sbjct: 65  DVE----FIGAPTKEALVEAIKK 83

>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]} Length = 116

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

 Score = 38.3 bits (88), Expect = 6e-05
 Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 2/71 (2%)

Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPE--AAKAFDLIDVLPTFVL 135
           V+I + A WCG CK + P  ++  A+Y   +F    V    +  A    D I   PT  L
Sbjct: 23  VLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATANDVPDEIQGFPTIKL 82

Query: 136 VKRGKEIDRVV 146
              G +   V 
Sbjct: 83  YPAGAKGQPVT 93

>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]} Length = 120

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (86), Expect = 1e-04
 Identities = 12/75 (16%), Positives = 26/75 (34%), Gaps = 5/75 (6%)

Query: 78  VVIYYTAAWCGPC----KFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTF 133
           +++ + A WCG C               A  ++++  K+D     + A+ +  +   PT 
Sbjct: 27  LLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYG-VRGYPTI 85

Query: 134 VLVKRGKEIDRVVGA 148
              + G         
Sbjct: 86  KFFRNGDTASPKEYT 100

>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 96

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

 Score = 35.5 bits (81), Expect = 5e-04
 Identities = 13/82 (15%), Positives = 25/82 (30%), Gaps = 6/82 (7%)

Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVK 137
               Y +  C  C  +   +   A +   ++   ID           + +  +P   +  
Sbjct: 18  EFETYYSLSCHNCPDVVQALNLMAVLNPRIKHTAIDGGTFQNEITERN-VMGVPAVFV-- 74

Query: 138 RGKEIDRVVGAK-KDELQMKTE 158
            GKE     G     E+  K +
Sbjct: 75  NGKEFG--QGRMTLTEIVAKVD 94

>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 122

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Windbeutel, N-terminal domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 35.8 bits (82), Expect = 5e-04
 Identities = 11/82 (13%), Positives = 21/82 (25%), Gaps = 8/82 (9%)

Query: 78  VVIYYTAAWCGPCKFIEP--YVKDFAAMYTDVQFIKIDVDWLPE------AAKAFDLIDV 129
            V+ +  A     K      + K       D+    + V    E        +       
Sbjct: 22  SVVKFDIASPYGEKHEAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGDRYKVDDKN 81

Query: 130 LPTFVLVKRGKEIDRVVGAKKD 151
            P+  L K   +    + +  D
Sbjct: 82  FPSIFLFKGNADEYVQLPSHVD 103

>d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]} Length = 135

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein p19, TLP19
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.8 bits (79), Expect = 0.001
 Identities = 10/79 (12%), Positives = 31/79 (39%), Gaps = 4/79 (5%)

Query: 78  VVIYYTAAWCGPCKFIEPYV---KDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFV 134
           +++    +WCG CK ++P      + + +  +   + ++ +  P+          +P  +
Sbjct: 28  LMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPKDEDFSPDGGYIPRIL 87

Query: 135 LVKR-GKEIDRVVGAKKDE 152
            +   GK    ++    + 
Sbjct: 88  FLDPSGKVHPEIINENGNP 106

>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]} Length = 104

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]

 Score = 33.4 bits (75), Expect = 0.003
 Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 3/84 (3%)

Query: 78  VVIYYTAAWCGPCKFIEP-YVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLV 136
           V++ + A WCGPCK I P   +        +   K++ D  P  A  ++ I  +PT +  
Sbjct: 20  VMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYN-IRSIPTVLFF 78

Query: 137 KRGKEIDRVVGAK-KDELQMKTEK 159
           K G+  + ++GA  K  L    EK
Sbjct: 79  KNGERKESIIGAVPKSTLTDSIEK 102

>d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]} Length = 144

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin II
species: Crithidia fasciculata [TaxId: 5656]

 Score = 33.6 bits (76), Expect = 0.004
 Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 3/50 (6%)

Query: 78  VVIYYTAAWCGPCKFIEPYVKDFAAMYTD---VQFIKIDVDWLPEAAKAF 124
           V  Y++A+WC P +   P + DF   + +    + + I  D   E  K +
Sbjct: 31  VFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDY 80

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	162
d1xfla_	114	Thioredoxin {Thale cress (Arabidopsis thaliana) [T	99.96
d1ti3a_	113	Thioredoxin {European aspen (Populus tremula), thi	99.96
d1ep7a_	112	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	99.95
d1gh2a_	107	Thioredoxin-like protein, N-terminal domain {Human	99.95
d2ifqa1	105	Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1xwaa_	111	Thioredoxin {Fruit fly (Drosophila melanogaster) [	99.95
d1syra_	103	Thioredoxin {Malarial parasite (Plasmodium falcipa	99.94
d1r26a_	113	Thioredoxin {Trypanosoma brucei [TaxId: 5691]}	99.94
d1nw2a_	105	Thioredoxin {Alicyclobacillus acidocaldarius, form	99.93
d1f9ma_	112	Thioredoxin {Spinach (Spinacia oleracea), thioredo	99.93
d1thxa_	108	Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}	99.93
d1fb6a_	104	Thioredoxin {Spinach (Spinacia oleracea), thioredo	99.92
d1dbya_	107	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	99.92
d2trxa_	108	Thioredoxin {Escherichia coli [TaxId: 562]}	99.92
d1qgva_	137	spliceosomal protein U5-15Kd {Human (Homo sapiens)	99.89
d2b5ea4	119	Protein disulfide isomerase, PDI {Baker's yeast (S	99.86
d2hfda1	132	Hydrogenase-1 operon protein HyaE {Escherichia col	99.86
d2es7a1	119	Hydrogenase-1 operon protein HyaE {Salmonella typh	99.85
d1a8la2	107	Protein disulfide isomerase, PDI {Archaeon Pyrococ	99.85
d1fo5a_	85	MJ0307, thioredoxin/glutaredoxin-like protein {Arc	99.84
d1woua_	119	Putative 42-9-9 protein (thioredoxin containing pr	99.84
d1meka_	120	Protein disulfide isomerase, PDI {Human (Homo sapi	99.83
d2fwha1	117	Thiol:disulfide interchange protein DsbD, C-termin	99.81
d1zmaa1	115	Bacterocin transport accessory protein Bta {Strept	99.8
d1nhoa_	85	MTH807, thioredoxin/glutaredoxin-like protein {Arc	99.8
d1hyua4	96	Alkyl hydroperoxide reductase subunit F (AhpF), N-	99.79
d1zzoa1	134	Lipoprotein DsbF {Mycobacterium tuberculosis [TaxI	99.79
d1a8ya1	124	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	99.79
d2trcp_	217	Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}	99.78
d2b5ea1	140	Protein disulfide isomerase, PDI {Baker's yeast (S	99.77
d1lu4a_	134	Soluble secreted antigen MPT53 {Mycobacterium tube	99.76
d2djja1	116	Protein disulfide isomerase, PDI {Fungi (Humicola	99.75
d1z5ye1	136	Thioredoxin-like protein CcmG (CycY, DsbE) {Escher	99.74
d2fy6a1	143	Peptide methionine sulfoxide reductase MsrA/MsrB,	99.73
d1st9a_	137	Thiol-disulfide oxidoreductase ResA {Bacillus subt	99.69
d2b5xa1	143	thiol:disulfide oxidoreductase YkuV {Bacillus subt	99.69
d2c0ga2	122	Windbeutel, N-terminal domain {Fruit fly (Drosophi	99.68
d1knga_	144	Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyr	99.68
d2cvba1	187	Probable thiol-disulfide isomerase/thioredoxin TTH	99.68
d1jfua_	176	Membrane-anchored thioredoxin-like protein TlpA, s	99.62
d1o73a_	144	Tryparedoxin I {Trypanosoma brucei brucei [TaxId:	99.61
d2dlxa1	147	UBX domain-containing protein 7 {Human (Homo sapie	99.6
d1o8xa_	144	Tryparedoxin I {Crithidia fasciculata [TaxId: 5656	99.59
d1i5ga_	144	Tryparedoxin II {Crithidia fasciculata [TaxId: 565	99.59
d1sena_	135	Thioredoxin-like protein p19, TLP19 {Human (Homo s	99.58
d1wjka_	100	Thioredoxin-like structure containing protein C330	99.53
d1g7ea_	122	Endoplasmic reticulum protein ERP29, N-terminal do	99.51
d1z6na1	166	Hypothetical protein PA1234 {Pseudomonas aeruginos	99.33
d2a4va1	156	Peroxiredoxin dot5 {Baker's yeast (Saccharomyces c	99.28
d2cx4a1	160	Bacterioferritin comigratory protein {Archaeon Aer	99.24
d1qxha_	164	Thiol peroxidase Tpx {Escherichia coli [TaxId: 562	99.11
d1e2ya_	167	Tryparedoxin peroxidase (thioredoxin peroxidase ho	99.11
d2f8aa1	184	Glutathione peroxidase {Human (Homo sapiens) [TaxI	99.07
d1xvwa1	153	Putative peroxiredoxin Rv2238c/MT2298 {Mycobacteri	99.05
d1psqa_	163	Probable thiol peroxidase PsaD {Streptococcus pneu	99.04
d1xzoa1	172	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	99.02
d1wp0a1	160	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	99.01
d1we0a1	166	Alkyl hydroperoxide reductase AhpC {Amphibacillus	98.97
d2bmxa1	169	Alkyl hydroperoxide reductase AhpC {Mycobacterium	98.96
d1xvqa_	166	Thiol peroxidase Tpx {Mycobacterium tuberculosis [	98.92
d1zyea1	158	Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [	98.9
d1zofa1	170	Thioredoxin reductase TsaA {Helicobacter pylori [T	98.87
d1q98a_	164	Thiol peroxidase Tpx {Haemophilus influenzae [TaxI	98.82
d1eeja1	156	Disulfide bond isomerase, DsbC, C-terminal domain	98.75
d1uula_	194	Tryparedoxin peroxidase (thioredoxin peroxidase ho	98.74
d1t3ba1	150	Disulfide bond isomerase, DsbC, C-terminal domain	98.69
d2zcta1	237	Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}	98.67
d1r7ha_	74	Glutaredoxin-like NRDH-redoxin {Corynebacterium am	98.64
d1beda_	181	Disulfide-bond formation facilitator (DsbA) {Vibri	98.6
d2b7ka1	169	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	98.58
d1v58a1	169	Thiol:disulfide interchange protein DsbG, C-termin	98.55
d1h75a_	76	Glutaredoxin-like NRDH-redoxin {Escherichia coli [	98.54
d2h01a1	170	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	98.52
d1prxa_	220	1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId:	98.45
d1ttza_	75	Hypothetical protein XCC2852 {Xanthomonas campestr	98.44
d1qmva_	197	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	98.42
d1n8ja_	186	Alkyl hydroperoxide reductase AhpC {Salmonella typ	98.4
d1z6ma1	172	Hypothetical protein EF0770 {Enterococcus faecalis	98.36
d1egoa_	85	Glutaredoxin (Grx, thioltransferase) {Escherichia	98.35
d1a8la1	119	Protein disulfide isomerase, PDI {Archaeon Pyrococ	98.11
d1ktea_	105	Glutaredoxin (Grx, thioltransferase) {Pig (Sus scr	98.06
d1iloa_	77	MTH985, a thioredoxin {Archaeon Methanobacterium t	98.04
d1fova_	82	Glutaredoxin (Grx, thioltransferase) {Escherichia	98.01
d1fvka_	188	Disulfide-bond formation facilitator (DsbA) {Esche	98.01
d1xcca_	219	1-Cys peroxiredoxin {Plasmodium yoelii yoelii [Tax	97.89
d1nm3a1	74	C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus	97.88
d2djka1	133	Protein disulfide isomerase, PDI {Fungi (Humicola	97.63
d2b5ea3	125	Protein disulfide isomerase, PDI {Baker's yeast (S	97.47
d2axoa1	225	Hypothetical protein Atu2684 {Agrobacterium tumefa	97.27
d1a8ya2	102	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	97.16
d1bjxa_	110	Protein disulfide isomerase, PDI {Human (Homo sapi	96.94
d1wika_	109	Thioredoxin-like protein 2 {Mouse (Mus musculus) [	96.82
d1hd2a_	161	Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606	96.77
d1g7oa2	75	Glutaredoxin 2 {Escherichia coli [TaxId: 562]}	95.54
d1un2a_	195	Disulfide-bond formation facilitator (DsbA) {Esche	95.05
d1t1va_	93	SH3BGRL3 {Mouse (Mus musculus) [TaxId: 10090]}	94.67
d1nm3a2	163	N-terminal, Prx domain of Hybrid-Prx5 {Haemophilus	93.67
d1t4za_	105	Adaptive-response sensory-kinase SasA, N-terminal	93.12
d1hyua3	102	Alkyl hydroperoxide reductase subunit F (AhpF), N-	92.97
d1tp9a1	162	Plant peroxiredoxin {Western balsam poplar(Populus	92.31
d1abaa_	87	Glutaredoxin (Grx, thioltransferase) {Bacteriophag	91.26
d1r5aa2	85	Class delta GST {Mosquito (Anopheles dirus b), iso	89.32
d1r5pa_	90	Circadian oscillation regulator KaiB {Cyanobacteri	86.99
d1xg8a_	111	Hypothetical protein SA0798 {Staphylococcus aureus	84.29
d1eema2	98	Class omega GST {Human (Homo sapiens) [TaxId: 9606	83.46
d1z9ha2	113	Microsomal prostaglandin E synthase-2 {Crab-eating	82.54
d1s3aa1	85	NADH-ubiquinone oxidoreductase b8 subunit, CI-B8 {	81.24
d1un2a_	195	Disulfide-bond formation facilitator (DsbA) {Esche	80.71
d1v2aa2	83	Class delta GST {Mosquito (Anopheles dirus b), iso	80.01

>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.96  E-value=2.8e-28  Score=166.03  Aligned_cols=111  Identities=40%  Similarity=0.771  Sum_probs=106.1

Q ss_pred             CCCceeEeechhhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhhhhhhHHH
Q 031271           18 KTPLVMELQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYV   97 (162)
Q Consensus        18 ~~~~v~~i~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~~~l   97 (162)
                      ..+.|+.+.|.++|++.+..+.++++++                                 +|+||++||++|+.+.|.|
T Consensus         4 ~~~~vi~i~s~~~~~~~~~~~~~~~~~v---------------------------------lv~F~a~wC~~C~~~~p~~   50 (114)
T d1xfla_           4 EEGQVIACHTVETWNEQLQKANESKTLV---------------------------------VVDFTASWCGPCRFIAPFF   50 (114)
T ss_dssp             CCSCCEEESSHHHHHHHHHHHHHTTCEE---------------------------------EEEEECTTCHHHHHHHHHH
T ss_pred             CCCcEEEEcCHHHHHHHHHHhhccCCeE---------------------------------EEEEEcCCCCCccccccch
Confidence            4678999999999999999988888999                                 9999999999999999999


Q ss_pred             HHHHHhcCCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCCCHHHHHHHHHHHhC
Q 031271           98 KDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQMKTEKRRN  162 (162)
Q Consensus        98 ~~~~~~~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~~~~~l~~~l~~~~~  162 (162)
                      +++++.|+++.|+.+|.+++++++++|+| .++||+++|++|+.+.++.|.++++|+++|++|+.
T Consensus        51 ~~l~~~~~~~~~~~vd~~~~~~l~~~~~V-~~~Pt~~~~~~G~~v~~~~G~~~~~l~~~i~k~la  114 (114)
T d1xfla_          51 ADLAKKLPNVLFLKVDTDELKSVASDWAI-QAMPTFMFLKEGKILDKVVGAKKDELQSTIAKHLA  114 (114)
T ss_dssp             HHHHHHCSSEEEEEEETTTSHHHHHHTTC-CSSSEEEEEETTEEEEEEESCCHHHHHHHHHHHCC
T ss_pred             hhhcccccccceeEEEeeeceeeccccce-eeeEEEEEEECCEEEEEEeCcCHHHHHHHHHHhhC
Confidence            99999999999999999999999999999 99999999999999999999999999999999874

>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]

Probab=99.96  E-value=2.4e-28  Score=166.04  Aligned_cols=110  Identities=35%  Similarity=0.754  Sum_probs=105.7

Q ss_pred             CCCceeEeechhhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhhhhhhHHH
Q 031271           18 KTPLVMELQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYV   97 (162)
Q Consensus        18 ~~~~v~~i~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~~~l   97 (162)
                      ..+.|..+.+.++|++.+..+..+++++                                 +|+||++||++|+.+.|.|
T Consensus         2 ~~g~vi~i~s~e~~~~~l~~~~~~~k~v---------------------------------vv~F~a~wC~~C~~~~p~~   48 (113)
T d1ti3a_           2 EEGQVIACHTVDTWKEHFEKGKGSQKLI---------------------------------VVDFTASWCPPCKMIAPIF   48 (113)
T ss_dssp             CCCCEEEECSHHHHHHHHHHHTTSSSEE---------------------------------EEEEECSSCHHHHHHHHHH
T ss_pred             CCCcEEEEeCHHHHHHHHHHHHcCCCEE---------------------------------EEEEEcCccccchhhhhhh
Confidence            4688999999999999999988888888                                 9999999999999999999


Q ss_pred             HHHHHhcCCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCCCHHHHHHHHHHHh
Q 031271           98 KDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQMKTEKRR  161 (162)
Q Consensus        98 ~~~~~~~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~~~~~l~~~l~~~~  161 (162)
                      ++++++++++.|+.+|++++++++++|+| .++||+++|++|+.+.++.|.+++.|.++|++|.
T Consensus        49 ~~~~~~~~~~~~~~vd~d~~~~l~~~~~I-~~~Pt~~~~k~G~~v~~~~G~~~~~l~~~i~k~a  111 (113)
T d1ti3a_          49 AELAKKFPNVTFLKVDVDELKAVAEEWNV-EAMPTFIFLKDGKLVDKTVGADKDGLPTLVAKHA  111 (113)
T ss_dssp             HHHHHHCSSEEEEEEETTTCHHHHHHHHC-SSTTEEEEEETTEEEEEEECCCTTHHHHHHHHHH
T ss_pred             hhhhccCCCceEEeeeeeccccccccCee-cccceEEEEECCEEEEEEcCCCHHHHHHHHHHHh
Confidence            99999999999999999999999999999 9999999999999999999999999999999985

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=99.95  E-value=8.1e-28  Score=163.28  Aligned_cols=109  Identities=35%  Similarity=0.676  Sum_probs=104.2

Q ss_pred             CceeEeechhhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhhhhhhHHHHH
Q 031271           20 PLVMELQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYVKD   99 (162)
Q Consensus        20 ~~v~~i~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~~~l~~   99 (162)
                      +.|..|++.++|++.+.++...++++                                 +|+||++||++|+.+.|.+++
T Consensus         2 g~v~~i~t~~~fd~~l~~~~~~~k~v---------------------------------vv~f~a~wC~~C~~~~p~~~~   48 (112)
T d1ep7a_           2 GSVIVIDSKAAWDAQLAKGKEEHKPI---------------------------------VVDFTATWCGPCKMIAPLFET   48 (112)
T ss_dssp             CSEEEECSHHHHHHHHHHHHHHTCCE---------------------------------EEEEECTTCHHHHHHHHHHHH
T ss_pred             CCEEEEeCHHHHHHHHHHHhhcCCeE---------------------------------EEEEEcCCcCCCcccchhhhh
Confidence            67899999999999999988888899                                 999999999999999999999


Q ss_pred             HHHhcCC-cEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCCCHHHHHHHHHHHhC
Q 031271          100 FAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQMKTEKRRN  162 (162)
Q Consensus       100 ~~~~~~~-v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~~~~~l~~~l~~~~~  162 (162)
                      +++++++ +.|+.||++++++++++|+| .++||+++|++|+.+.++.|.+.++|+++|++|..
T Consensus        49 l~~~~~~~v~~~~vd~d~~~~l~~~~~v-~~~Pt~~~~~~G~~v~~~~G~~~~~l~~~i~k~~a  111 (112)
T d1ep7a_          49 LSNDYAGKVIFLKVDVDAVAAVAEAAGI-TAMPTFHVYKDGVKADDLVGASQDKLKALVAKHAA  111 (112)
T ss_dssp             HHHHTTTTSEEEEEETTTTHHHHHHHTC-CBSSEEEEEETTEEEEEEESCCHHHHHHHHHHHHC
T ss_pred             hhhcccceEEEEEeeccccccccccccc-cCCCEEEEEECCEEEEEEeCcCHHHHHHHHHHHhC
Confidence            9999986 99999999999999999999 99999999999999999999999999999999863

>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.4e-27  Score=160.90  Aligned_cols=106  Identities=25%  Similarity=0.434  Sum_probs=100.2

Q ss_pred             ceeEeechhhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhhhhhhHHHHHH
Q 031271           21 LVMELQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYVKDF  100 (162)
Q Consensus        21 ~v~~i~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~~~l~~~  100 (162)
                      .|+.|.|.++|++.+..+  +++++                                 +|+||++||++|+.+.|.|+++
T Consensus         2 ~v~~i~s~~~f~~~l~~~--~~klv---------------------------------vv~F~a~wC~~Ck~~~p~~~~l   46 (107)
T d1gh2a_           2 GVKPVGSDPDFQPELSGA--GSRLA---------------------------------VVKFTMRGCGPCLRIAPAFSSM   46 (107)
T ss_dssp             CEEEECSGGGHHHHHHHT--TTSCE---------------------------------EEEEECSSCHHHHHHHHHHHHH
T ss_pred             ceEEcCCHHHHHHHHHhC--CCCEE---------------------------------EEEEECCCCCCccccchhhhcc
Confidence            478899999999999764  47788                                 9999999999999999999999


Q ss_pred             HHhcCCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCCCHHHHHHHHHHHhC
Q 031271          101 AAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQMKTEKRRN  162 (162)
Q Consensus       101 ~~~~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~~~~~l~~~l~~~~~  162 (162)
                      +++++++.|+.+|++++++++++|+| .++||+++|++|+.+.++.|.+++.|+++|+++++
T Consensus        47 a~~~~~~~f~~vd~d~~~~l~~~~~v-~~~Pt~~~~~~G~~v~~~~G~~~~~l~~~i~k~le  107 (107)
T d1gh2a_          47 SNKYPQAVFLEVDVHQCQGTAATNNI-SATPTFQFFRNKVRIDQYQGADAVGLEEKIKQHLE  107 (107)
T ss_dssp             HHHCTTSEEEEEETTTSHHHHHHTTC-CSSSEEEEEETTEEEEEEESSCHHHHHHHHHHHHC
T ss_pred             ccccccccccccccccchhhhhhcCc-eeceEEEEEECCEEEEEEeCCCHHHHHHHHHHhhC
Confidence            99999999999999999999999999 99999999999999999999999999999999975

>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=3.1e-27  Score=158.47  Aligned_cols=105  Identities=31%  Similarity=0.739  Sum_probs=98.8

Q ss_pred             ceeEeechhhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhhhhhhHHHHHH
Q 031271           21 LVMELQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYVKDF  100 (162)
Q Consensus        21 ~v~~i~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~~~l~~~  100 (162)
                      +|++|.|.++|++.++++  +++++                                 +|+|||+||++|+.+.|.++++
T Consensus         1 mv~~i~s~~~f~~~l~~~--~~k~v---------------------------------vv~F~a~wC~~C~~~~p~~~~l   45 (105)
T d2ifqa1           1 MVKQIESKTAFQEALDAA--GDKLV---------------------------------VVDFSATWCGPCKMIKPFFHSL   45 (105)
T ss_dssp             CCEEECSHHHHHHHHHHT--TTSCE---------------------------------EEEEECTTCHHHHHHHHHHHHH
T ss_pred             CeEEcCCHHHHHHHHHhC--CCCEE---------------------------------EEEEEcCCccchhhhhhhhhhh
Confidence            578999999999999864  46888                                 9999999999999999999999


Q ss_pred             HHhcCCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCCCHHHHHHHHHHHh
Q 031271          101 AAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQMKTEKRR  161 (162)
Q Consensus       101 ~~~~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~~~~~l~~~l~~~~  161 (162)
                      ++.++++.|+.+|+|++++++++|+| .++||+++|++|+.+.++.|.++++|+++|++++
T Consensus        46 ~~~~~~~~~~~vd~d~~~~~~~~~~V-~~~Pt~~~~~~G~~v~~~~G~~~~~l~~~i~~~l  105 (105)
T d2ifqa1          46 SEKYSNVIFLEVDVDDCQDVASECEV-KCMPTFQFFKKGQKVGEFSGANKEKLEATINELV  105 (105)
T ss_dssp             HHHCTTSEEEEEETTTCHHHHHHTTC-CBSSEEEEEETTEEEEEEESCCHHHHHHHHHHHC
T ss_pred             ccccccceeeecccccCHhHHHHcCc-eEEEEEEEEECCEEEEEEeCCCHHHHHHHHHhhC
Confidence            99999999999999999999999999 9999999999999999999999999999999864

>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.95  E-value=1e-26  Score=157.26  Aligned_cols=108  Identities=30%  Similarity=0.630  Sum_probs=101.3

Q ss_pred             CCCceeEeechhhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhhhhhhHHH
Q 031271           18 KTPLVMELQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYV   97 (162)
Q Consensus        18 ~~~~v~~i~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~~~l   97 (162)
                      ..++|.+|.+.++|++.|..+  +++++                                 +|+||++||++|+.+.|.+
T Consensus         3 ~~~~v~~i~~~~~~~~~l~~~--~~k~v---------------------------------lv~f~a~wC~~C~~~~p~~   47 (111)
T d1xwaa_           3 AAAMVYQVKDKADLDGQLTKA--SGKLV---------------------------------VLDFFATWCGPCKMISPKL   47 (111)
T ss_dssp             CSCCEEECCSHHHHHHHHHHH--TTSEE---------------------------------EEEEECTTCHHHHHHHHHH
T ss_pred             CCCeEEEECCHHHHHHHHHhc--CCCEE---------------------------------EEEEECCcccCccccchhH
Confidence            467899999999999999874  47888                                 9999999999999999999


Q ss_pred             HHHHHhcCC-cEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCCCHHHHHHHHHHHh
Q 031271           98 KDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQMKTEKRR  161 (162)
Q Consensus        98 ~~~~~~~~~-v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~~~~~l~~~l~~~~  161 (162)
                      +++++++++ +.++.+|.+++++++++|+| .++||+++|++|+.+.++.|.++++|+++|++|+
T Consensus        48 ~~l~~~~~~~~~~~~i~~d~~~~l~~~~~V-~~~Pt~~~~~~G~~v~~~~G~~~~~l~~~I~~~l  111 (111)
T d1xwaa_          48 VELSTQFADNVVVLKVDVDECEDIAMEYNI-SSMPTFVFLKNGVKVEEFAGANAKRLEDVIKANI  111 (111)
T ss_dssp             HHHHHHTTTTEEEEEEETTTCHHHHHHTTC-CSSSEEEEEETTEEEEEEESCCHHHHHHHHHHTC
T ss_pred             HHHhhhcccceEEEEEEeecCcchhhcCCC-ccccEEEEEECCEEEEEEeCCCHHHHHHHHHhcC
Confidence            999999987 99999999999999999999 9999999999999999999999899999999874

>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.94  E-value=1.4e-26  Score=154.61  Aligned_cols=103  Identities=33%  Similarity=0.654  Sum_probs=96.9

Q ss_pred             ceeEeechhhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhhhhhhHHHHHH
Q 031271           21 LVMELQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYVKDF  100 (162)
Q Consensus        21 ~v~~i~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~~~l~~~  100 (162)
                      +|..++|.++|++.+++    ++++                                 +|+||++||++|+.+.|.++++
T Consensus         1 mv~~i~s~~~f~~~i~~----~~~v---------------------------------vv~F~a~wC~~C~~~~~~~~~l   43 (103)
T d1syra_           1 MVKIVTSQAEFDSIISQ----NELV---------------------------------IVDFFAEWCGPCKRIAPFYEEC   43 (103)
T ss_dssp             CCEEECSHHHHHHHHHH----CSEE---------------------------------EEEEECTTCHHHHHHHHHHHHH
T ss_pred             CcEEeCCHHHHHHHHhC----CCcE---------------------------------EEEEeCCcccCcccccccchhh
Confidence            46788999999999863    6778                                 9999999999999999999999


Q ss_pred             HHhcCCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCCCHHHHHHHHHHHh
Q 031271          101 AAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQMKTEKRR  161 (162)
Q Consensus       101 ~~~~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~~~~~l~~~l~~~~  161 (162)
                      +++++++.|+.+|++++++++++|+| .++||+++|++|+.+.++.|.+.++|.++|++|+
T Consensus        44 ~~~~~~~~~~~vd~d~~~~~~~~~~V-~~~Pt~i~~k~G~~v~~~~G~~~~~l~~~i~k~a  103 (103)
T d1syra_          44 SKTYTKMVFIKVDVDEVSEVTEKENI-TSMPTFKVYKNGSSVDTLLGANDSALKQLIEKYA  103 (103)
T ss_dssp             HHHCTTSEEEEEETTTTHHHHHHTTC-CSSSEEEEEETTEEEEEEESCCHHHHHHHHHTTC
T ss_pred             hhcccceEEEeeccccCcceeeeeee-ecceEEEEEECCEEEEEEeCcCHHHHHHHHHhhC
Confidence            99999999999999999999999999 9999999999999999999999999999999874

>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.94  E-value=1.7e-26  Score=157.02  Aligned_cols=107  Identities=35%  Similarity=0.593  Sum_probs=99.4

Q ss_pred             cCCCceeEeechhhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhhhhhhHH
Q 031271           17 AKTPLVMELQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPY   96 (162)
Q Consensus        17 ~~~~~v~~i~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~~~   96 (162)
                      +..+.+.++.+.++|++.++    +++++                                 +|+|||+||++|+.+.|.
T Consensus         5 ~~~p~vi~i~s~~~~~~~~~----~~~~v---------------------------------vv~F~a~wC~~C~~~~p~   47 (113)
T d1r26a_           5 ARYPSVVDVYSVEQFRNIMS----EDILT---------------------------------VAWFTAVWCGPCKTIERP   47 (113)
T ss_dssp             SCCSCCEEECCHHHHHHHHH----SSSCE---------------------------------EEEEECTTCHHHHHTHHH
T ss_pred             cCCCceEEeCCHHHHHHHHc----CCCeE---------------------------------EEEEECCCCccchhhcee
Confidence            34667999999999999884    36778                                 999999999999999999


Q ss_pred             HHHHHHhcCCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCCCHHHHHHHHHHHh
Q 031271           97 VKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQMKTEKRR  161 (162)
Q Consensus        97 l~~~~~~~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~~~~~l~~~l~~~~  161 (162)
                      |++++++++++.|+.||+|++++++++|+| .++||+++|++|+.+.++.|.+++.+.+.|++++
T Consensus        48 l~~l~~~~~~v~~~~vd~d~~~~l~~~~~V-~~~Pt~~~~~~G~~v~~~~G~~~~~l~~~l~~~i  111 (113)
T d1r26a_          48 MEKIAYEFPTVKFAKVDADNNSEIVSKCRV-LQLPTFIIARSGKMLGHVIGANPGMLRQKLRDII  111 (113)
T ss_dssp             HHHHHHHCTTSEEEEEETTTCHHHHHHTTC-CSSSEEEEEETTEEEEEEESSCHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccchhhHHHccc-cCCCEEEEEECCEEEEEEeCCCHHHHHHHHHHHh
Confidence            999999999999999999999999999999 9999999999999999999999999999998765

>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]

Probab=99.93  E-value=2.7e-26  Score=153.62  Aligned_cols=87  Identities=31%  Similarity=0.665  Sum_probs=81.4

Q ss_pred             CceEEEEEecCCChhhhhhhHHHHHHHHhcCC-cEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHH
Q 031271           75 VLKVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDE  152 (162)
Q Consensus        75 ~k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~-v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~  152 (162)
                      +++++|+||++||++|+.+.|.+++++++|++ +.|++||++.++.++++|+| .++||+++|++|+.+.++.|. +.+.
T Consensus        17 ~k~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~V-~~~Pt~~~~~~G~~~~~~~G~~~~~~   95 (105)
T d1nw2a_          17 DKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGI-MSIPTLILFKGGEPVKQLIGYQPKEQ   95 (105)
T ss_dssp             SSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTCHHHHHHTTC-CBSSEEEEEETTEEEEEEESCCCHHH
T ss_pred             CCcEEEEEECCCCCCcccccchhhhhhhhcCCceEEEEEECCCCcccHHHCCc-ceeeEEEEEECCEEEEEEECCCCHHH
Confidence            34449999999999999999999999999986 99999999999999999999 999999999999999999999 8999


Q ss_pred             HHHHHHHHhC
Q 031271          153 LQMKTEKRRN  162 (162)
Q Consensus       153 l~~~l~~~~~  162 (162)
                      |+++|+++++
T Consensus        96 l~~~i~~~L~  105 (105)
T d1nw2a_          96 LEAQLADVLQ  105 (105)
T ss_dssp             HHHHTTTTCC
T ss_pred             HHHHHHHHhC
Confidence            9999998764

>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]

Probab=99.93  E-value=3.4e-25  Score=150.22  Aligned_cols=109  Identities=32%  Similarity=0.544  Sum_probs=98.0

Q ss_pred             cCCCceeEeechhhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhhhhhhHH
Q 031271           17 AKTPLVMELQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPY   96 (162)
Q Consensus        17 ~~~~~v~~i~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~~~   96 (162)
                      +..+.|.+++. ++|.+.+..+  +++++                                 +|+||++||++|+.+.|.
T Consensus         3 ~~~g~v~~~~~-d~f~~~l~~~--~~k~v---------------------------------vv~f~a~wC~~C~~~~p~   46 (112)
T d1f9ma_           3 AIVGKVTEVNK-DTFWPIVKAA--GDKPV---------------------------------VLDMFTQWCGPCKAMAPK   46 (112)
T ss_dssp             CCTTSEEEECT-TTHHHHHHTC--TTSCE---------------------------------EEEEECTTCHHHHHHHHH
T ss_pred             ccceeeEEeCH-HHHHHHHHHc--CCCEE---------------------------------EEEEEcCCCcchHHHHHH
Confidence            34678889865 6788888753  46778                                 999999999999999999


Q ss_pred             HHHHHHhcCCcEEEEEECCC-cHHHHHhcCCCCCccEEEEEcCCeEEEEEcCCCHHHHHHHHHHHhC
Q 031271           97 VKDFAAMYTDVQFIKIDVDW-LPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQMKTEKRRN  162 (162)
Q Consensus        97 l~~~~~~~~~v~f~~vd~d~-~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~~~~~l~~~l~~~~~  162 (162)
                      |++++++|+++.|+.+|+++ +++++++|+| .++||+++|++|+.+.++.|.++++++++|++++.
T Consensus        47 ~~~l~~~~~~v~~~~vd~~~~~~~l~~~~~V-~~~Pt~~~~k~G~~v~~~~G~~~~~l~e~i~~~~~  112 (112)
T d1f9ma_          47 YEKLAEEYLDVIFLKLDCNQENKTLAKELGI-RVVPTFKILKENSVVGEVTGAKYDKLLEAIQAARS  112 (112)
T ss_dssp             HHHHHHHCTTSEEEEEECSSTTHHHHHHHCC-SSSSEEEEEETTEEEEEEESSCHHHHHHHHHHHHC
T ss_pred             HhhhccccccceeecccccccchhhHhheee-ccCCEEEEEECCEEEEEEeCCCHHHHHHHHHHccC
Confidence            99999999999999999975 7999999999 99999999999999999999999999999998863

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

Probab=99.93  E-value=6.5e-25  Score=147.50  Aligned_cols=83  Identities=30%  Similarity=0.680  Sum_probs=80.2

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCC-cEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHHH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQMK  156 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~-v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~~  156 (162)
                      +|+||++||++|+.+.|.+++++.++++ +.|+.||+|++++++++|+| .++||+++|++|+.+.++.|. +.++|+++
T Consensus        24 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~I-~~~Pt~~~~~~g~~v~~~~G~~~~~~l~~~  102 (108)
T d1thxa_          24 LVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPTTVKKYKV-EGVPALRLVKGEQILDSTEGVISKDKLLSF  102 (108)
T ss_dssp             EEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEESTTCHHHHHHTTC-CSSSEEEEEETTEEEEEEESCCCHHHHHHH
T ss_pred             EEEEECCCCCCccccchHHHHHHHhcCCcceeceecccccHHHHHHhcc-cCCCEEEEEECCEEEEEEeCCCCHHHHHHH
Confidence            9999999999999999999999999987 99999999999999999999 999999999999999999998 89999999


Q ss_pred             HHHHhC
Q 031271          157 TEKRRN  162 (162)
Q Consensus       157 l~~~~~  162 (162)
                      |+++++
T Consensus       103 i~~~Ln  108 (108)
T d1thxa_         103 LDTHLN  108 (108)
T ss_dssp             HHHHHC
T ss_pred             HHHhcC
Confidence            999875

>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]

Probab=99.92  E-value=5.7e-25  Score=146.74  Aligned_cols=82  Identities=30%  Similarity=0.684  Sum_probs=79.2

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCC-cEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHHH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQMK  156 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~-v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~~  156 (162)
                      +|+||++||++|+++.|.++++++.+++ +.++.||.+.+++++++|+| .++||+++|++|+.+.++.|. +.+.|.++
T Consensus        21 lv~F~a~wC~~C~~~~~~~~~l~~~~~~~~~~~~v~~d~~~~l~~~~~V-~~~Pt~~~~~~G~~v~~~~G~~~~~~l~~~   99 (104)
T d1fb6a_          21 MVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNI-RSIPTVLFFKNGERKESIIGAVPKSTLTDS   99 (104)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTC-CSSSEEEEEETTEEEEEEEECCCHHHHHHH
T ss_pred             EEEEEcCccCCccccCchhHHHHHhhcCccceeEEecccchhhhhhcce-eeeeEEEEEEcCeEEEEEeCCCCHHHHHHH
Confidence            9999999999999999999999999976 99999999999999999999 999999999999999999998 89999999


Q ss_pred             HHHHh
Q 031271          157 TEKRR  161 (162)
Q Consensus       157 l~~~~  161 (162)
                      |++++
T Consensus       100 i~~~L  104 (104)
T d1fb6a_         100 IEKYL  104 (104)
T ss_dssp             HHHHC
T ss_pred             HHHhC
Confidence            99875

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=99.92  E-value=6.7e-25  Score=147.18  Aligned_cols=83  Identities=33%  Similarity=0.721  Sum_probs=79.8

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCC-cEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHHH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQMK  156 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~-v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~~  156 (162)
                      +|+|||+||++|+.+.|.+.++++++.+ +.|+.||+|.+++++++|+| .++||+++|++|+.+.++.|. +.+.|+++
T Consensus        23 lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~V-~~~Pt~~~~~~G~~v~~~~G~~~~~~l~~~  101 (107)
T d1dbya_          23 LVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVASEYGI-RSIPTIMVFKGGKKCETIIGAVPKATIVQT  101 (107)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHHTC-CSSCEEEEESSSSEEEEEESCCCHHHHHHH
T ss_pred             EEEEECCCCCCccccChHHHHHHHhhcccceEEEEecccchhHHHHhcc-cceEEEEEEECCeEEEEEeCCCCHHHHHHH
Confidence            9999999999999999999999998865 99999999999999999999 999999999999999999998 89999999


Q ss_pred             HHHHhC
Q 031271          157 TEKRRN  162 (162)
Q Consensus       157 l~~~~~  162 (162)
                      |+++++
T Consensus       102 i~~~L~  107 (107)
T d1dbya_         102 VEKYLN  107 (107)
T ss_dssp             HHHHCC
T ss_pred             HHHhhC
Confidence            999975

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=1.7e-24  Score=145.35  Aligned_cols=83  Identities=30%  Similarity=0.625  Sum_probs=79.1

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCC-cEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHHH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQMK  156 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~-v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~~  156 (162)
                      +|+|||+||++|+.+.|.+.+++.++.+ +.++.+|+|+++.++.+|+| .++||+++|++|+.+.++.|. +.+.|.++
T Consensus        24 ~v~F~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~vd~d~~~~l~~~~~v-~~~PT~~~~~~G~~v~~~~G~~~~~~l~~~  102 (108)
T d2trxa_          24 LVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGI-RGIPTLLLFKNGEVAATKVGALSKGQLKEF  102 (108)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCTTHHHHTTC-CSSSEEEEEETTEEEEEEESCCCHHHHHHH
T ss_pred             EEEEECCCCCCccccCcHHHHHHHHhhcceeeeeccccchhhHHHHhCC-CcEEEEEEEECCEEEEEEeCCCCHHHHHHH
Confidence            9999999999999999999999988765 99999999999999999999 999999999999999999998 89999999


Q ss_pred             HHHHhC
Q 031271          157 TEKRRN  162 (162)
Q Consensus       157 l~~~~~  162 (162)
                      |++++.
T Consensus       103 i~~~Ls  108 (108)
T d2trxa_         103 LDANLA  108 (108)
T ss_dssp             HHHHHC
T ss_pred             HHHhcC
Confidence            999874

>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: spliceosomal protein U5-15Kd
domain: spliceosomal protein U5-15Kd
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=3.6e-23  Score=144.82  Aligned_cols=104  Identities=21%  Similarity=0.292  Sum_probs=91.0

Q ss_pred             ceeEeechhhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhhhhhhHHHHHH
Q 031271           21 LVMELQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYVKDF  100 (162)
Q Consensus        21 ~v~~i~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~~~l~~~  100 (162)
                      ++.++.|..++++++..  ++++++                                 +|+||++||++|+++.|.|+++
T Consensus         3 ~l~~l~s~~~~dq~i~~--~~~k~v---------------------------------vv~F~a~wC~~C~~~~p~l~~l   47 (137)
T d1qgva_           3 MLPHLHNGWQVDQAILS--EEDRVV---------------------------------VIRFGHDWDPTCMKMDEVLYSI   47 (137)
T ss_dssp             SSCBCCSHHHHHHHHHT--CSSSEE---------------------------------EEEEECTTSHHHHHHHHHHHHH
T ss_pred             cccccCCHHHHHHHHHh--CCCCEE---------------------------------EEEEECCCCccchhcChHHHHH
Confidence            46678899999999985  357788                                 9999999999999999999999


Q ss_pred             HHhcCC-cEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-----------CHHHHHHHHHHH
Q 031271          101 AAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-----------KKDELQMKTEKR  160 (162)
Q Consensus       101 ~~~~~~-v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-----------~~~~l~~~l~~~  160 (162)
                      +++|++ +.|+.||+|++++++++|+| .++||+++|++|+.+....|.           +.+++++.++..
T Consensus        48 a~~~~~~v~~~~VDvd~~~~la~~~~I-~~~PT~~~f~~g~~i~~~~g~~~~~k~~~~l~~~~~~i~~ie~i  118 (137)
T d1qgva_          48 AEKVKNFAVIYLVDITEVPDFNKMYEL-YDPCTVMFFFRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETV  118 (137)
T ss_dssp             HHHHTTTEEEEEEETTTCCTTTTSSCS-CSSCEEEEEETTEEEEEECC------CCSCCSCHHHHHHHHHHH
T ss_pred             HHHhhccceEEEeeccccchhhhhcCe-eeEEEEEEEeCCcEEEEEecCCCcceeeeehhhhHHHHHHHHHH
Confidence            999987 99999999999999999999 999999999999998755442           566777777654

>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.86  E-value=1.8e-21  Score=132.66  Aligned_cols=107  Identities=18%  Similarity=0.337  Sum_probs=91.3

Q ss_pred             ccCCCceeEeechhhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhhhhhhH
Q 031271           16 HAKTPLVMELQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEP   95 (162)
Q Consensus        16 ~~~~~~v~~i~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~~   95 (162)
                      ..+.+.|..+++ ++|++.++    +++.+                                 +|+||++||++|+.+.|
T Consensus         6 ~~~~s~v~~lt~-~~f~~~i~----~~~~~---------------------------------lV~fya~wC~~C~~~~~   47 (119)
T d2b5ea4           6 APEDSAVVKLAT-DSFNEYIQ----SHDLV---------------------------------LAEFFAPWCGHCKNMAP   47 (119)
T ss_dssp             CCTTSSCEECCT-TTHHHHHT----TCSEE---------------------------------EEEEECTTCHHHHHHHH
T ss_pred             CCCCCccEEcCH-HHHHHHHh----cCCeE---------------------------------EEEEECCccCcccccch
Confidence            345677888865 77888774    25667                                 99999999999999999


Q ss_pred             HHHHHHHhcC--CcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEE--EcCC-CHHHHHHHHHHHh
Q 031271           96 YVKDFAAMYT--DVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDR--VVGA-KKDELQMKTEKRR  161 (162)
Q Consensus        96 ~l~~~~~~~~--~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~--~~g~-~~~~l~~~l~~~~  161 (162)
                      .|+++++.+.  ++.|+.||++++++++++|+| .++||+++|++|+...+  +.|. +.+.|++||+++.
T Consensus        48 ~~~~la~~~~~~~v~~~~vd~~~~~~l~~~~~v-~~~Pti~~f~~g~~~~~~~y~g~~~~~~l~~fi~k~~  117 (119)
T d2b5ea4          48 EYVKAAETLVEKNITLAQIDCTENQDLCMEHNI-PGFPSLKIFKNSDVNNSIDYEGPRTAEAIVQFMIKQS  117 (119)
T ss_dssp             HHHHHHHHTTTTTCEEEEEETTTCHHHHHHTTC-CSSSEEEEEETTCTTCEEECCSCCSHHHHHHHHHHHT
T ss_pred             hhhhhhhhhcccceeeeeeeccchHHHHHHhcc-ccCCeEEEEECCEEeeeEEecCCCCHHHHHHHHHHhh
Confidence            9999999885  399999999999999999999 99999999999866543  4566 8999999999875

>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Escherichia coli [TaxId: 562]

Probab=99.86  E-value=4.5e-22  Score=138.41  Aligned_cols=82  Identities=11%  Similarity=0.043  Sum_probs=78.3

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCC--cEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTD--VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQM  155 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~--v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~  155 (162)
                      +|.||++||++|+.+.|.|++++++|++  +.+++||+|++++++++|+| .++||+++|++|+.+.++.|. +.+.|++
T Consensus        40 ll~f~a~wCp~C~~~~pvl~ela~~~~~~~~~~a~Vd~d~~~~la~~~~V-~~~PT~~~~~~G~~v~~~~G~~~~~~l~~  118 (132)
T d2hfda1          40 LLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGV-FRFPATLVFTGGNYRGVLNGIHPWAELIN  118 (132)
T ss_dssp             EECSCCSCCSSSSCCTHHHHHHHTTCTTSCEEEEEECHHHHHHHHHHHTC-CSCCEEEEEETTEEEEEECCCSCHHHHHH
T ss_pred             EEEeeCCCChhHHHHHHHHHHHHHHccCCcceeEEEEecCCHHHHHhhcc-CcceeEEEEEcCcEeeeecCCCCHHHHHH
Confidence            9999999999999999999999999987  67789999999999999999 999999999999999999998 9999999


Q ss_pred             HHHHHh
Q 031271          156 KTEKRR  161 (162)
Q Consensus       156 ~l~~~~  161 (162)
                      +|++++
T Consensus       119 ~i~~ll  124 (132)
T d2hfda1         119 LMRGLV  124 (132)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            999875

>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.85  E-value=3.2e-22  Score=136.79  Aligned_cols=84  Identities=11%  Similarity=0.111  Sum_probs=71.7

Q ss_pred             EEEEEecCCChhhhhhhHHHHHHHHhcCC--cEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHH
Q 031271           78 VVIYYTAAWCGPCKFIEPYVKDFAAMYTD--VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQ  154 (162)
Q Consensus        78 vvv~F~a~wC~~C~~~~~~l~~~~~~~~~--v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~  154 (162)
                      |++.||++||++|+.+.|.|++++++|++  +.++.||+|++++++++|+| .++||+++|++|+.+.++.|. +.++|.
T Consensus        33 vll~f~a~wCp~C~~~~pvl~eL~~~~~~~~~~~~~Vd~d~~~~l~~~~~V-~~~Pt~~~~~~G~~v~~~~G~~~~~~l~  111 (119)
T d2es7a1          33 ILLSSDPRRTPEVSDNPVMIAELLREFPQFDWQVAVADLEQSEAIGDRFNV-RRFPATLVFTDGKLRGALSGIHPWAELL  111 (119)
T ss_dssp             EEECCCSCC----CCHHHHHHHHHHTCTTSCCEEEEECHHHHHHHHHTTTC-CSSSEEEEESCC----CEESCCCHHHHH
T ss_pred             EEEeecCCCCccHHHHHHHHHHHHHhcCCCceEEEEEECCCCHHHHHhcCc-CcceEEEEEEcCeEEEEeeCCCCHHHHH
Confidence            39999999999999999999999999987  88899999999999999999 999999999999999999998 899999


Q ss_pred             HHHHHHhC
Q 031271          155 MKTEKRRN  162 (162)
Q Consensus       155 ~~l~~~~~  162 (162)
                      ++|++.++
T Consensus       112 ~~i~~lLd  119 (119)
T d2es7a1         112 TLMRSIVD  119 (119)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHhC
Confidence            99998764

>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.85  E-value=9.8e-21  Score=126.38  Aligned_cols=83  Identities=16%  Similarity=0.220  Sum_probs=75.7

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHh----cC-CcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAM----YT-DVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDE  152 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~----~~-~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~  152 (162)
                      ++.||++||++|+++.|.+++++.+    +. .+.+..+|.+++++++++|+| .++||++++++|+.+.++.|. +.+.
T Consensus        19 i~~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~v~~~~id~~~~~~l~~~~~V-~~vPTi~i~~~G~~~~~~~G~~~~~~   97 (107)
T d1a8la2          19 ILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPEWADQYNV-MAVPKIVIQVNGEDRVEFEGAYPEKM   97 (107)
T ss_dssp             EEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGGCHHHHHHTTC-CSSCEEEEEETTEEEEEEESCCCHHH
T ss_pred             EEEEEcCccccchhhChhHHhhhhhhhhccCCcEEEEEecccccccccccccc-ccceEEEEEeCCeEEEEEECCCCHHH
Confidence            6679999999999999999999764    22 389999999999999999999 999999999999999999998 8999


Q ss_pred             HHHHHHHHhC
Q 031271          153 LQMKTEKRRN  162 (162)
Q Consensus       153 l~~~l~~~~~  162 (162)
                      |+++|.+.++
T Consensus        98 ~~~~i~~al~  107 (107)
T d1a8la2          98 FLEKLLSALS  107 (107)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHhhC
Confidence            9999998764

>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MJ0307, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.84  E-value=1.1e-21  Score=126.14  Aligned_cols=81  Identities=25%  Similarity=0.345  Sum_probs=73.2

Q ss_pred             ceEEEEEecCCChhhhhhhHHHHHHHHhcCC-cEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHH
Q 031271           76 LKVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDEL  153 (162)
Q Consensus        76 k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~-v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l  153 (162)
                      |..|++|||+||++|+.+.|.++++++.+++ +.+..+|.+++++++++|+| .++||++++++|+    +.|. +.+.|
T Consensus         3 kv~v~~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~d~~~~la~~~~V-~~~Pt~~i~~~g~----~~G~~~~~~l   77 (85)
T d1fo5a_           3 KVKIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQKAMEYGI-MAVPTIVINGDVE----FIGAPTKEAL   77 (85)
T ss_dssp             CEEEEEEECCCSSCCCTHHHHHHHHHHHCSSSEEEEEEESSSSCCTTTSTTT-CCSSEEEETTEEE----CCSSSSSHHH
T ss_pred             ceEEEEEECCCCcChHhhhhhccccccccccccccccccccccccccccCCc-eEeeEEEEECCcE----EECCCCHHHH
Confidence            4458999999999999999999999999986 89999999999999999999 9999999888875    4577 89999


Q ss_pred             HHHHHHHh
Q 031271          154 QMKTEKRR  161 (162)
Q Consensus       154 ~~~l~~~~  161 (162)
                      +++|++++
T Consensus        78 ~~~i~~~L   85 (85)
T d1fo5a_          78 VEAIKKRL   85 (85)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHhcC
Confidence            99999874

>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Txnl5-like
domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=5.3e-21  Score=130.65  Aligned_cols=101  Identities=16%  Similarity=0.317  Sum_probs=86.9

Q ss_pred             eEeechhhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecC-------CChhhhhhhH
Q 031271           23 MELQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAA-------WCGPCKFIEP   95 (162)
Q Consensus        23 ~~i~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~-------wC~~C~~~~~   95 (162)
                      ..|.+.++|.+.++..  +++++                                 +|+|||+       ||++|+++.|
T Consensus         4 i~v~~~~e~~~~l~~~--~gk~v---------------------------------~v~F~a~~~~~g~sWC~pCk~~~P   48 (119)
T d1woua_           4 VSVSGFEEFHRAVEQH--NGKTI---------------------------------FAYFTGSKDAGGKSWCPDCVQAEP   48 (119)
T ss_dssp             EEEESHHHHHHHHHTT--TTSEE---------------------------------EEEEECCBCTTCCBSCHHHHHHHH
T ss_pred             EEeCCHHHHHHHHHHc--CCCEE---------------------------------EEEEEecCCCCCCCCChhHHHHHH
Confidence            4678889999999863  47788                                 9999995       9999999999


Q ss_pred             HHHHHHHhcCC-cEEEEEECC-------CcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCCCHHHHHHHHHH
Q 031271           96 YVKDFAAMYTD-VQFIKIDVD-------WLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQMKTEK  159 (162)
Q Consensus        96 ~l~~~~~~~~~-v~f~~vd~d-------~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~~~~~l~~~l~~  159 (162)
                      .++++++.+++ +.|+.||++       .+..++.+|+| .++||+++|++|+.+....+.+++.++.++++
T Consensus        49 ~~~~l~~~~~~~~~~~~vdv~~~~~~~d~~~~l~~~~~V-~~iPT~i~~~~g~~l~~~~~~~~~ll~~~~~e  119 (119)
T d1woua_          49 VVREGLKHISEGCVFIYCQVGEKPYWKDPNNDFRKNLKV-TAVPTLLKYGTPQKLVESECLQANLVEMLFSE  119 (119)
T ss_dssp             HHHHHGGGCCTTEEEEEEECCCHHHHHCTTCHHHHHHCC-CSSSEEEETTSSCEEEGGGGGCHHHHHHHHHC
T ss_pred             HHHHHHHhcCCceEEEEEECCCCcccchhhhhHHHhCCe-EEEEEEEEEECCeEEeeeecCCHHHHHHHhcC
Confidence            99999999986 999999985       55668999999 99999999999988876666688888887763

>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=6.6e-21  Score=129.71  Aligned_cols=82  Identities=21%  Similarity=0.457  Sum_probs=73.8

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcC----CcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEE--EEEcCC-CHH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYT----DVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEI--DRVVGA-KKD  151 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~----~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i--~~~~g~-~~~  151 (162)
                      +|.||++||++|+.+.|.++++++.+.    .+.++.||++.++.++.+|+| .++||+++|++|+.+  .++.|. +.+
T Consensus        28 lV~Fya~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i-~~~Pt~~~~~~G~~~~~~~~~g~~~~~  106 (120)
T d1meka_          28 LVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGV-RGYPTIKFFRNGDTASPKEYTAGREAD  106 (120)
T ss_dssp             EEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTCCSSHHHHTC-CSSSEEEEEESSCSSSCEECCCCSSHH
T ss_pred             EEEEECCCcCCccccchhhhhhcccccccccceeeeccccccchhHHHHhCC-ccCCeEEEEECCeEeeeEEecCCCCHH
Confidence            999999999999999999999999874    289999999999999999999 999999999988654  355676 899


Q ss_pred             HHHHHHHHHh
Q 031271          152 ELQMKTEKRR  161 (162)
Q Consensus       152 ~l~~~l~~~~  161 (162)
                      .|.+||++++
T Consensus       107 ~l~~fi~~~~  116 (120)
T d1meka_         107 DIVNWLKKRT  116 (120)
T ss_dssp             HHHHHHHTTS
T ss_pred             HHHHHHHHhh
Confidence            9999999875

>d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma)
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=9.2e-20  Score=123.33  Aligned_cols=103  Identities=19%  Similarity=0.343  Sum_probs=87.0

Q ss_pred             ceeEeechhhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhhhhhhHHH---
Q 031271           21 LVMELQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYV---   97 (162)
Q Consensus        21 ~v~~i~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~~~l---   97 (162)
                      ..+.|.+.++++..++.++  +|++                                 +|+||++||++|+.+.|.+   
T Consensus         3 ~f~~i~~~~~~~~~l~~~~--gK~v---------------------------------lv~F~a~wC~~C~~~~~~~~~~   47 (117)
T d2fwha1           3 NFTQIKTVDELNQALVEAK--GKPV---------------------------------MLDLYADWCVACKEFEKYTFSD   47 (117)
T ss_dssp             CCEECCSHHHHHHHHHHHT--TSCE---------------------------------EEEEECTTCHHHHHHHHHTTTS
T ss_pred             CceEecCHHHHHHHHHHcC--CCeE---------------------------------EEEEecccCCcccccchhHHhH
Confidence            3567888999999997753  7888                                 9999999999999999988   


Q ss_pred             HHHHHhcCCcEEEEEECCC----cHHHHHhcCCCCCccEEEEE-cCCeEEE--EEcCC-CHHHHHHHHHH
Q 031271           98 KDFAAMYTDVQFIKIDVDW----LPEAAKAFDLIDVLPTFVLV-KRGKEID--RVVGA-KKDELQMKTEK  159 (162)
Q Consensus        98 ~~~~~~~~~v~f~~vd~d~----~~~l~~~~~i~~~~Ptiv~~-~~Gk~i~--~~~g~-~~~~l~~~l~~  159 (162)
                      .++.+.+.++.++.++++.    ..+++++|+| .++||+++| ++|+.+.  ++.|. ++++|.++|++
T Consensus        48 ~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v-~~~Pt~~~~~~~G~~~~~~~~~G~~~~~~~~~~l~~  116 (117)
T d2fwha1          48 PQVQKALADTVLLQANVTANDAQDVALLKHLNV-LGLPTILFFDGQGQEHPQARVTGFMDAETFSAHLRD  116 (117)
T ss_dssp             HHHHHHTTTSEEEEEECTTCCHHHHHHHHHTTC-CSSSEEEEECTTSCBCGGGCBCSCCCHHHHHHHHHH
T ss_pred             HHHHHhccceEEEecccccchhHHHHHHhhheh-hhceEEEEEeCCCcEEecccccccCCHHHHHHHHhc
Confidence            6677777788888888753    4568999999 999999999 7898764  67888 99999999975

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.80  E-value=2.1e-19  Score=121.56  Aligned_cols=79  Identities=14%  Similarity=0.215  Sum_probs=68.5

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCC-cEEEEEECCCc----HHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWL----PEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDE  152 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~-v~f~~vd~d~~----~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~  152 (162)
                      +|+||++||++|+.+.|.|++++++++. +.++.++...+    ..++++|+| .++||+++|++|+...++.|. +.++
T Consensus        30 ~v~f~~~~C~~C~~~~p~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~V-~~~PTli~~~~gk~~~~~~G~~~~~e  108 (115)
T d1zmaa1          30 TFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFINSEEPSQLNDLQAFRSRYGI-PTVPGFVHITDGQINVRCDSSMSAQE  108 (115)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHHCCCCEEEETTCGGGHHHHHHHHHHHTC-CSSCEEEEEETTEEEEECCTTCCHHH
T ss_pred             EEEEcCCCCccHHHHHHHHHHHHHHhhhhhhhheeeccccccccccccccccc-ccccEEEEEECCEEEEEEcCCCCHHH
Confidence            9999999999999999999999998865 66655543332    468899999 999999999999999999998 9999


Q ss_pred             HHHHHH
Q 031271          153 LQMKTE  158 (162)
Q Consensus       153 l~~~l~  158 (162)
                      |+++|.
T Consensus       109 l~~fla  114 (115)
T d1zmaa1         109 IKDFAG  114 (115)
T ss_dssp             HHHHHT
T ss_pred             HHHHHc
Confidence            999873

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.80  E-value=5.9e-20  Score=118.08  Aligned_cols=79  Identities=24%  Similarity=0.372  Sum_probs=70.4

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCC-cEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHHH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQMK  156 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~-v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~~  156 (162)
                      +..||++||++|+++.|.+++++++|++ +.|+.+|++++++++++|+| .++||+++  +|+.  ++.|. +++.|+++
T Consensus         5 v~~F~a~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~d~~~~l~~~~~V-~~~Pt~~~--~~~~--~~~G~~~~~~l~~~   79 (85)
T d1nhoa_           5 IEVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDREKAIEYGL-MAVPAIAI--NGVV--RFVGAPSREELFEA   79 (85)
T ss_dssp             EEEESCSSSCCSTTHHHHHHHHHHHHCSSCCEEEECTTTCGGGGGGTCS-SCSSEEEE--TTTE--EEECSSCCHHHHHH
T ss_pred             EEEEECCCCcchHHHHHHHhhhcccccccccccccccccchhhHHhcCc-eEeCEEEE--CCcE--EEEcCCCHHHHHHH
Confidence            6679999999999999999999999976 99999999999999999999 99999877  4442  35677 99999999


Q ss_pred             HHHHhC
Q 031271          157 TEKRRN  162 (162)
Q Consensus       157 l~~~~~  162 (162)
                      |+++++
T Consensus        80 i~~~l~   85 (85)
T d1nhoa_          80 INDEME   85 (85)
T ss_dssp             HHHHCC
T ss_pred             HHHhhC
Confidence            998864

>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.79  E-value=5.6e-19  Score=116.05  Aligned_cols=75  Identities=17%  Similarity=0.243  Sum_probs=68.9

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHHHH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQMKT  157 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~~l  157 (162)
                      ++.|+++||++|+.+.|.+++++..++++.|..+|++.+++++.+|+| .++||+++  ||+.+  +.|. +.++|+++|
T Consensus        19 i~~F~s~~C~~C~~~~p~~~~~a~~~~~i~~~~vd~~~~~~l~~~~~I-~~vPt~~~--ng~~~--~~G~~~~~~l~~~l   93 (96)
T d1hyua4          19 FETYYSLSCHNCPDVVQALNLMAVLNPRIKHTAIDGGTFQNEITERNV-MGVPAVFV--NGKEF--GQGRMTLTEIVAKV   93 (96)
T ss_dssp             EEEEECTTCSSHHHHHHHHHHHHHHCTTEEEEEEETTTCHHHHHHTTC-CSSSEEEE--TTEEE--EESCCCHHHHHHHH
T ss_pred             EEEEECCCCcchHHHHHHHHHHHHhCCceEEEEEecccchHHHhhccc-ccccEEEE--CCEEE--EecCCCHHHHHHHH
Confidence            788999999999999999999999999999999999999999999999 99999855  88876  4577 899999887


Q ss_pred             H
Q 031271          158 E  158 (162)
Q Consensus       158 ~  158 (162)
                      +
T Consensus        94 e   94 (96)
T d1hyua4          94 D   94 (96)
T ss_dssp             C
T ss_pred             h
Confidence            5

>d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Lipoprotein DsbF
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.79  E-value=1.6e-18  Score=119.63  Aligned_cols=101  Identities=22%  Similarity=0.285  Sum_probs=86.1

Q ss_pred             ccceeEEecCCCeeeeeC---ceEEEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECC-------------------
Q 031271           58 INEMVLNINDGGNVVFWV---LKVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVD-------------------  115 (162)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~---k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d-------------------  115 (162)
                      ..+|.+.+.||+.+..++   |+|+|+||++||++|+...|.+.++.++++++.++.++.+                   
T Consensus         5 ~~df~~~~~~G~~~~l~~~~Gk~vll~fwa~wC~~C~~~~p~l~~l~~~~~~~~~v~v~~~d~~~~~~~~~~~~~~~~~~   84 (134)
T d1zzoa1           5 QLQFSAKTLDGHDFHGESLLGKPAVLWFWAPWCPTCQGEAPVVGQVAASHPEVTFVGVAGLDQVPAMQEFVNKYPVKTFT   84 (134)
T ss_dssp             GGCCEEEBTTSCEEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCHHHHHHHHHHTTCTTSE
T ss_pred             CcceeEEcCCCCEEeHHHhCCCEEEEEecccccCcccccchhhHHHHhhhcccccccccccccchhHHHHHHhcCCccee
Confidence            446899999999887765   9999999999999999999999999999998888877663                   


Q ss_pred             ----CcHHHHHhcCCCCCccEEEEE-cCCeEEEEEcCC-CHHHHHHHHHHH
Q 031271          116 ----WLPEAAKAFDLIDVLPTFVLV-KRGKEIDRVVGA-KKDELQMKTEKR  160 (162)
Q Consensus       116 ----~~~~l~~~~~i~~~~Ptiv~~-~~Gk~i~~~~g~-~~~~l~~~l~~~  160 (162)
                          ....+.+.|++ .++|+++++ ++|++.. +.|. +.++|.+.|+++
T Consensus        85 ~l~D~~~~~~~~~~v-~~~P~~~iiD~~G~i~~-~~g~~~~~~l~~~i~~L  133 (134)
T d1zzoa1          85 QLADTDGSVWANFGV-TQQPAYAFVDPHGNVDV-VRGRMSQDELTRRVTAL  133 (134)
T ss_dssp             EEECTTCHHHHHTTC-CSSSEEEEECTTCCEEE-EESCCCHHHHHHHHHHH
T ss_pred             EEeeccchHHHhcCC-CccCeEEEECCCCeEEE-EECCCCHHHHHHHHHhh
Confidence                23478999999 999998888 7888654 5566 899999999875

>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.79  E-value=1.3e-18  Score=119.00  Aligned_cols=108  Identities=14%  Similarity=0.120  Sum_probs=87.9

Q ss_pred             cccCCCceeEeechhhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChh-----
Q 031271           15 IHAKTPLVMELQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGP-----   89 (162)
Q Consensus        15 ~~~~~~~v~~i~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~-----   89 (162)
                      .+.+.+.|.+++ .++|++.++.    .+.+                                 +|.||+|||+.     
T Consensus         6 ~~d~~~~V~~L~-~~nf~~~l~~----~~~~---------------------------------~V~FyapwC~~~~~~~   47 (124)
T d1a8ya1           6 EYDGVDRVINVN-AKNYKNVFKK----YEVL---------------------------------ALLYHEPPEDDKASQR   47 (124)
T ss_dssp             CCCCCCCCEECC-TTTHHHHHHH----CSEE---------------------------------EEEEECCCCSSHHHHH
T ss_pred             ccCCCCccEECC-HHHHHHHHHh----CCeE---------------------------------EEEEECCCccchhhhh
Confidence            444567788887 4889998864    4567                                 89999999985     


Q ss_pred             -hhhhhHHHHHHHHhcC--CcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHHHHHHHhC
Q 031271           90 -CKFIEPYVKDFAAMYT--DVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQMKTEKRRN  162 (162)
Q Consensus        90 -C~~~~~~l~~~~~~~~--~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~~l~~~~~  162 (162)
                       |..+.+.++.+++.+.  ++.|++||++.+++++++|+| .++||+++|++|+.+. +.|. +.+.|.+||.+.++
T Consensus        48 ~~~~~~~~~~~~a~~~~~~~v~~a~Vd~~~~~~l~~~~~I-~~yPTi~~f~~g~~~~-y~G~r~~~~l~~fi~~~l~  122 (124)
T d1a8ya1          48 QFEMEELILELAAQVLEDKGVGFGLVDSEKDAAVAKKLGL-TEEDSIYVFKEDEVIE-YDGEFSADTLVEFLLDVLE  122 (124)
T ss_dssp             HHHHHHHHHHHHHHHTGGGTEEEEEEETTTSHHHHHTTTC-CSTTCEEEEESSSEEE-CCSCCSHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHhccCCeEEEEEEeecccchhhcccc-ccCCcEEEeccCccEE-eeCCCCHHHHHHHHHHhcC
Confidence             4555666676666554  499999999999999999999 9999999999999886 5566 99999999998763

>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Phosducin
domain: Phosducin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.78  E-value=1.7e-19  Score=134.83  Aligned_cols=107  Identities=23%  Similarity=0.310  Sum_probs=93.4

Q ss_pred             CCCceeEeechhhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhhhhhhHHH
Q 031271           18 KTPLVMELQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYV   97 (162)
Q Consensus        18 ~~~~v~~i~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~~~l   97 (162)
                      +.+.|.+|.+.++|.+.+... ..+.+|                                 ||+||++||++|+.|.|.|
T Consensus        97 ~~G~v~~i~~~~~f~~~v~~~-~~~~~V---------------------------------vvhfy~~~~~~C~~~~~~l  142 (217)
T d2trcp_          97 RYGFVYELETGEQFLETIEKE-QKVTTI---------------------------------VVNIYEDGVRGCDALNSSL  142 (217)
T ss_dssp             CCCSEEECCSHHHHHHHHHHS-CTTCEE---------------------------------EEEEECTTSTTHHHHHHHH
T ss_pred             cCCeEEEcCCHHHHHHHHHhc-CCCCeE---------------------------------EEEEEcCCCCChhhhhhhH
Confidence            467899999888898888763 334566                                 9999999999999999999


Q ss_pred             HHHHHhcCCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC--------CHHHHHHHHHHH
Q 031271           98 KDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA--------KKDELQMKTEKR  160 (162)
Q Consensus        98 ~~~~~~~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~--------~~~~l~~~l~~~  160 (162)
                      ++++++|+++.|++||.+..+ +..+|++ ..+||+++|++|+.+.+++|+        +.+.|+.+|.++
T Consensus       143 ~~lA~~~~~vkF~ki~~~~~~-~~~~~~i-~~lPtl~~yk~G~~v~~~vg~~~~~g~~~~~~~lE~~L~~~  211 (217)
T d2trcp_         143 ECLAAEYPMVKFCKIRASNTG-AGDRFSS-DVLPTLLVYKGGELISNFISVAEQFAEDFFAADVESFLNEY  211 (217)
T ss_dssp             HHHHTTCTTSEEEEEEHHHHT-CSTTSCG-GGCSEEEEEETTEEEEEETTGGGGSCSSCCHHHHHHHHHTT
T ss_pred             HHHhhhcccceEEEEccccch-hHHhCCC-CCCCeEEEEECCEEEEEEECccccccccCCHHHHHHHHHHc
Confidence            999999999999999998765 5689999 999999999999999999885        367888888765

>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.77  E-value=1.3e-19  Score=126.49  Aligned_cols=104  Identities=24%  Similarity=0.438  Sum_probs=83.0

Q ss_pred             CCCceeEeechhhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhhhhhhHHH
Q 031271           18 KTPLVMELQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYV   97 (162)
Q Consensus        18 ~~~~v~~i~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~~~l   97 (162)
                      ..+.|..+++ ..|++.+..   .++.+                                 +|+||++||++|+.+.|.|
T Consensus        10 ~~~~V~~l~~-~nf~~~v~~---~~k~v---------------------------------lV~F~a~wC~~C~~~~p~~   52 (140)
T d2b5ea1          10 QDSSVFQLVG-KNHDEIVND---PKKDV---------------------------------LVLYYAPWCGHCKRLAPTY   52 (140)
T ss_dssp             CSCSEEEECT-TTHHHHHHC---TTCCE---------------------------------EEEEECTTCHHHHHHHHHH
T ss_pred             CCCCcEEecC-cCHHHHHhc---CCCCE---------------------------------EEEEEeccCcccchhHHHH
Confidence            3567888855 788888743   35667                                 9999999999999999999


Q ss_pred             HHHHHhcCC----cEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEE--EcCC-CHHHHHHHHHHHh
Q 031271           98 KDFAAMYTD----VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDR--VVGA-KKDELQMKTEKRR  161 (162)
Q Consensus        98 ~~~~~~~~~----v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~--~~g~-~~~~l~~~l~~~~  161 (162)
                      +++++.|.+    +.++.+|.  ...++++|+| .++||+++|++|+....  +.|. +.+.|.+||+++.
T Consensus        53 ~~la~~~~~~~~~v~~~~~d~--~~~~~~~~~v-~~~Ptl~~f~~g~~~~~~~y~G~~t~~~l~~fi~~~~  120 (140)
T d2b5ea1          53 QELADTYANATSDVLIAKLDH--TENDVRGVVI-EGYPTIVLYPGGKKSESVVYQGSRSLDSLFDFIKENG  120 (140)
T ss_dssp             HHHHHHHHHHCSSCEEEEEEG--GGCCCSSCCC-SSSSEEEEECCTTSCCCCBCCSCCCHHHHHHHHHHHC
T ss_pred             HHHHHHHhccccceEEEeeec--cchhcccccc-ccCCeEEEEECCEEcceeEeCCCCCHHHHHHHHHHcC
Confidence            999988753    55555555  4457899999 99999999998876654  3566 9999999999864

>d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Soluble secreted antigen MPT53
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.76  E-value=9.6e-18  Score=115.95  Aligned_cols=102  Identities=19%  Similarity=0.230  Sum_probs=86.2

Q ss_pred             cccceeEEecCCCeeeeeC---ceEEEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCC-----------------
Q 031271           57 CINEMVLNINDGGNVVFWV---LKVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDW-----------------  116 (162)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~---k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~-----------------  116 (162)
                      ..++|++.+.+|+.+..++   |+|+|+||++||++|+...|.|+++.++++++.++.|+.+.                 
T Consensus         3 ~~~~f~~~~~~G~~~~l~~~~Gk~vll~F~a~wC~~C~~~~p~l~~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~p   82 (134)
T d1lu4a_           3 ERLQFTATTLSGAPFDGASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAANPAVTFVGIATRADVGAMQSFVSKYNLNFT   82 (134)
T ss_dssp             GGGCCEEEBTTSCEEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCHHHHHHHHHHHTCCSE
T ss_pred             CCCcceeECCCCCEEcHHHhCCCEEEEEEeecccCCceecchhHHHHhhhhccccccccccccchhhhhhhhhhhccccc
Confidence            3567999999999997765   99999999999999999999999999999999999888753                 


Q ss_pred             -----cHHHHHhcCCCCCccEEEEE-cCCeEEEE--EcCC-CHHHHHHHHHH
Q 031271          117 -----LPEAAKAFDLIDVLPTFVLV-KRGKEIDR--VVGA-KKDELQMKTEK  159 (162)
Q Consensus       117 -----~~~l~~~~~i~~~~Ptiv~~-~~Gk~i~~--~~g~-~~~~l~~~l~~  159 (162)
                           ...+++.|++ .++|+++++ ++|++...  ..|. +.++|.+.|.+
T Consensus        83 ~~~d~~~~~~~~~~v-~~~P~~~lid~~G~i~~v~~~~g~~~~~~l~~~l~~  133 (134)
T d1lu4a_          83 NLNDADGVIWARYNV-PWQPAFVFYRADGTSTFVNNPTAAMSQDELSGRVAA  133 (134)
T ss_dssp             EEECTTSHHHHHTTC-CSSSEEEEECTTSCEEEECCSSSCCCHHHHHHHHHH
T ss_pred             eeeCchHHHHHHcCC-CcCCEEEEEeCCCeEEEEeccCCCCCHHHHHHHHHc
Confidence                 3468889999 999998888 78876543  3455 89999998875

>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=99.75  E-value=1.3e-19  Score=122.31  Aligned_cols=88  Identities=20%  Similarity=0.300  Sum_probs=67.4

Q ss_pred             eeCceEEEEEecCCChhhhhhhHHHHHHHHhcCC---cEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEE--EEEcC
Q 031271           73 FWVLKVVIYYTAAWCGPCKFIEPYVKDFAAMYTD---VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEI--DRVVG  147 (162)
Q Consensus        73 ~~~k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~---v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i--~~~~g  147 (162)
                      .++++++|+||++||++|+++.|.|+++++.+.+   ..++.++.+.....+.+++| .++||+++|++|+..  ..+.|
T Consensus        18 ~~~k~vlV~fya~wC~~Ck~~~p~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~Pti~~f~~g~~~~~~~~~g   96 (116)
T d2djja1          18 DDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATANDVPDEI-QGFPTIKLYPAGAKGQPVTYSG   96 (116)
T ss_dssp             CTTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTTSCCSSCC-SSSSEEEEECSSCTTSCCCCCC
T ss_pred             cCCCCEEEEEEecccccccccchHHHHHHHHHhcccccceeEEEecccchhhhcccc-cCCCEEEEEECCccCceEEecC
Confidence            4456669999999999999999999999998864   22233443333344568999 999999999887532  23556


Q ss_pred             C-CHHHHHHHHHHHh
Q 031271          148 A-KKDELQMKTEKRR  161 (162)
Q Consensus       148 ~-~~~~l~~~l~~~~  161 (162)
                      . +.+.|.++|+++.
T Consensus        97 ~~~~~~l~~fi~~~~  111 (116)
T d2djja1          97 SRTVEDLIKFIAENG  111 (116)
T ss_dssp             CSCHHHHHHHHHHTS
T ss_pred             CCCHHHHHHHHHHcc
Confidence            6 8999999999875

>d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Escherichia coli [TaxId: 562]

Probab=99.74  E-value=5.1e-18  Score=117.52  Aligned_cols=85  Identities=13%  Similarity=0.155  Sum_probs=67.8

Q ss_pred             eCceEEEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECC-----------------------CcHHHHHhcCCCCCc
Q 031271           74 WVLKVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVD-----------------------WLPEAAKAFDLIDVL  130 (162)
Q Consensus        74 ~~k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d-----------------------~~~~l~~~~~i~~~~  130 (162)
                      ..|+|+|+|||+||++|+...|.|+++.+.  ++.++.++.+                       .+..++..|++ .++
T Consensus        19 ~Gk~vvl~FwatWC~pC~~e~p~l~~~~~~--~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v-~~~   95 (136)
T d1z5ye1          19 QGKPVLLNVWATWCPTSRAEHQYLNQLSAQ--GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGV-YGA   95 (136)
T ss_dssp             SSSCEEEEEECTTCHHHHHHHHHHHHHHHT--TCCEEEEEESCCHHHHHHHHHHHCCCCSEEEEESSCHHHHHHTC-CSB
T ss_pred             CCCEEEEEEEcCcCCCcCccccchhhhhhh--hhhhcccccccchhhhHHHHHHcCCccceeecccchhHHHhccc-CCc
Confidence            347889999999999999999999999774  3455555443                       23468889999 999


Q ss_pred             cEEEEE-cCCeEEEEEcCC-CHHHHHHHHHHHh
Q 031271          131 PTFVLV-KRGKEIDRVVGA-KKDELQMKTEKRR  161 (162)
Q Consensus       131 Ptiv~~-~~Gk~i~~~~g~-~~~~l~~~l~~~~  161 (162)
                      |+++++ ++|+++.++.|. +.+.+.+.|++.+
T Consensus        96 P~~~liD~~G~i~~~~~G~~~~~~l~~~i~~ll  128 (136)
T d1z5ye1          96 PETFLIDGNGIIRYRHAGDLNPRVWEEEIKPLW  128 (136)
T ss_dssp             SEEEEECTTSCEEEEEESCCCHHHHHHHTHHHH
T ss_pred             ceEEEEcCCCEEEEEEEcCCCHHHHHHHHHHHH
Confidence            987777 899999999998 7877777666543

>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain
species: Neisseria meningitidis serogroup A [TaxId: 65699]

Probab=99.73  E-value=1.4e-17  Score=115.89  Aligned_cols=98  Identities=17%  Similarity=0.246  Sum_probs=81.1

Q ss_pred             eEEecCCCeeee---eCceEEEEEecCCChhhhhhhHHHHHHHHhcC--CcEEEEEECC---------------------
Q 031271           62 VLNINDGGNVVF---WVLKVVIYYTAAWCGPCKFIEPYVKDFAAMYT--DVQFIKIDVD---------------------  115 (162)
Q Consensus        62 ~~~~~~~~~~~~---~~k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~--~v~f~~vd~d---------------------  115 (162)
                      ++.+.||+.+..   .+|+++|+||++||++|+...|.+.++.+++.  ++.++.|..+                     
T Consensus         7 ~l~~~~~~~~~l~~~~gk~vvl~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~   86 (143)
T d2fy6a1           7 TLKTADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLNYP   86 (143)
T ss_dssp             TCEETTSCBGGGGCCTTSCEEEEEECTTCHHHHTTHHHHHHHHHCGGGTTSEEEEEECTTSTTCCCTTHHHHHHTTSCCT
T ss_pred             eeECCCCCEeeHHHhCCCEEEEEEECCCCccccccCcchhhhhhhhccCCcEEEEEeeeecccccchhhhhhhhhhcCCc
Confidence            456677776543   44899999999999999999999999988775  4777777642                     


Q ss_pred             -------CcHHHHHhcCCCCCccEEEEE-cCCeEEEEEcCC-CHHHHHHHHHHH
Q 031271          116 -------WLPEAAKAFDLIDVLPTFVLV-KRGKEIDRVVGA-KKDELQMKTEKR  160 (162)
Q Consensus       116 -------~~~~l~~~~~i~~~~Ptiv~~-~~Gk~i~~~~g~-~~~~l~~~l~~~  160 (162)
                             ...++++.|++ .++|+++++ ++|+++.++.|. +.+++.++|++.
T Consensus        87 ~~~~~~D~~~~~~~~~~v-~~~P~~~liD~~G~i~~~~~G~~~~~~~~~~l~~~  139 (143)
T d2fy6a1          87 KLPVVTDNGGTIAQSLNI-SVYPSWALIGKDGDVQRIVKGSINEAQALALIRDP  139 (143)
T ss_dssp             TSCEEECTTCHHHHHTTC-CSSSEEEEECTTSCEEEEEESCCCHHHHHHHHHCT
T ss_pred             ccccccccchHHHHHcCC-CccCEEEEECCCCEEEEEEECCCCHHHHHHHHHHH
Confidence                   23478999999 999998888 899999999998 999999999865

>d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol-disulfide oxidoreductase ResA
species: Bacillus subtilis [TaxId: 1423]

Probab=99.69  E-value=2.4e-16  Score=108.92  Aligned_cols=103  Identities=22%  Similarity=0.405  Sum_probs=87.4

Q ss_pred             cccceeEEecCCCeeeeeC---ceEEEEEecCCChhhhhhhHHHHHHHHhcCC--cEEEEEECCCc--------------
Q 031271           57 CINEMVLNINDGGNVVFWV---LKVVIYYTAAWCGPCKFIEPYVKDFAAMYTD--VQFIKIDVDWL--------------  117 (162)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~---k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~--v~f~~vd~d~~--------------  117 (162)
                      ..|++.+.+.+|+.+..++   |+++|+||++||++|....+.+.++.+++.+  +.++.|+.+..              
T Consensus         4 ~~P~f~l~~~~G~~~~l~~~~gk~~li~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~   83 (137)
T d1st9a_           4 DAPNFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVN   83 (137)
T ss_dssp             ECCCCEEECTTSCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCHHHHHHHHHHTTCC
T ss_pred             cCCCeEEECCCcCEEeHHHhCCCEEEEEEeeccccceeecccccccccccccccccccccccccchhhhHHHHHHHcCCC
Confidence            4688999999999887654   8999999999999999999999999998864  88888876432              


Q ss_pred             --------HHHHHhcCCCCCccEEEEE-cCCeEEEEEcCC-CHHHHHHHHHHH
Q 031271          118 --------PEAAKAFDLIDVLPTFVLV-KRGKEIDRVVGA-KKDELQMKTEKR  160 (162)
Q Consensus       118 --------~~l~~~~~i~~~~Ptiv~~-~~Gk~i~~~~g~-~~~~l~~~l~~~  160 (162)
                              ..+++.|++ .++|+++++ ++|+++.++.|. +.+.+.+.|+..
T Consensus        84 ~~~~~d~~~~~~~~~~v-~~~P~~~liD~~G~i~~~~~G~~~~~~~~~~l~~l  135 (137)
T d1st9a_          84 FPVVLDTDRQVLDAYDV-SPLPTTFLINPEGKVVKVVTGTMTESMIHDYMNLI  135 (137)
T ss_dssp             SCEEEETTSHHHHHTTC-CSSCEEEEECTTSEEEEEEESCCCHHHHHHHHHHH
T ss_pred             ccccccccchhhhhhhc-cccceEEEECCCCEEEEEEECCCCHHHHHHHHHhh
Confidence                    357888999 999988777 899999999998 888888777643

>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: thiol:disulfide oxidoreductase YkuV
species: Bacillus subtilis [TaxId: 1423]

Probab=99.69  E-value=8.7e-17  Score=112.12  Aligned_cols=102  Identities=18%  Similarity=0.263  Sum_probs=80.8

Q ss_pred             ccceeEEe--cCCCeeee---eCceEEEEEecCCChhhhhhhHHHHHHHHhcCC-cEEEEEECC----------------
Q 031271           58 INEMVLNI--NDGGNVVF---WVLKVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVD----------------  115 (162)
Q Consensus        58 ~~~~~~~~--~~~~~~~~---~~k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~-v~f~~vd~d----------------  115 (162)
                      .|++...+  .+|+.+..   .+|+|+|+||++||++|+...|.+.++.+++++ +.++.|+.+                
T Consensus         7 aP~~~~~~~~~ng~~~~~~~~~~k~vvl~f~a~~C~~C~~~~p~l~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~   86 (143)
T d2b5xa1           7 MPELTGEKAWLNGEVTREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSEDDLDPGKIKETAA   86 (143)
T ss_dssp             CCCCCCCSEEESCCCCHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTSEEEEEECCCSTTTSSHHHHHHHHH
T ss_pred             CCCCcCCccCcCCeEecHHHhCCCEEEEEEEcCCCcchhhhhhhhhhhhhhhhccccceeEEeeccccccchhhhhhHHH
Confidence            35554333  46654433   448899999999999999999999999999976 888888653                


Q ss_pred             -----------CcHHHHHhcCCCCCccEEEEE-cCCeEEEEEcCC-CHHHHHHHHHHH
Q 031271          116 -----------WLPEAAKAFDLIDVLPTFVLV-KRGKEIDRVVGA-KKDELQMKTEKR  160 (162)
Q Consensus       116 -----------~~~~l~~~~~i~~~~Ptiv~~-~~Gk~i~~~~g~-~~~~l~~~l~~~  160 (162)
                                 ....+++.|++ ..+|+++++ ++|+++.++.|. +.+.|++.|+++
T Consensus        87 ~~~~~~p~~~D~~~~~~~~~~v-~~~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~l  143 (143)
T d2b5xa1          87 EHDITQPIFVDSDHALTDAFEN-EYVPAYYVFDKTGQLRHFQAGGSGMKMLEKRVNRV  143 (143)
T ss_dssp             HTTCCSCEEECSSCHHHHHTCC-CCSSEEEEECTTCBEEEEEESCSTTHHHHHHHHHH
T ss_pred             hhccCccccccCccchHHHcCC-CcCCEEEEECCCCEEEEEEECCCCHHHHHHHHHhC
Confidence                       22357888999 999998877 899999999998 789999988864

>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Windbeutel, N-terminal domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.68  E-value=1.5e-17  Score=113.42  Aligned_cols=80  Identities=15%  Similarity=0.116  Sum_probs=65.5

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhc----CCcEEEEEECC-----CcHHHHHhcCCCC--CccEEEEEcCCeEEE---E
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMY----TDVQFIKIDVD-----WLPEAAKAFDLID--VLPTFVLVKRGKEID---R  144 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~----~~v~f~~vd~d-----~~~~l~~~~~i~~--~~Ptiv~~~~Gk~i~---~  144 (162)
                      +|.||++||++|+.  |.|+++++.+    +++.+.+||++     .+.+++.+|++ .  ++||+++|++|+...   .
T Consensus        23 lV~Fya~wC~~ck~--p~f~kla~~~~~~~~~v~ia~Vd~~~~~~~~n~~l~~~~~i-~~~~~PTi~~f~~g~~~~~~~~   99 (122)
T d2c0ga2          23 VVKFDIASPYGEKH--EAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGDRYKV-DDKNFPSIFLFKGNADEYVQLP   99 (122)
T ss_dssp             EEEEEESSCCSHHH--HHHHHHHHHHHHHCSSEEEEEEEECSSTTCTTHHHHHHTTC-CTTSCCEEEEESSSSSSEEECC
T ss_pred             EEEEECCCCCcccC--HHHHHHHHHHHHhCCCeEEEeccccccccccCHHHHHHhhc-ccCCCCcEEEEeCCcccccccc
Confidence            99999999999994  8898888764    45899999985     46899999988 5  699999998875322   2


Q ss_pred             EcCC-CHHHHHHHHHHHh
Q 031271          145 VVGA-KKDELQMKTEKRR  161 (162)
Q Consensus       145 ~~g~-~~~~l~~~l~~~~  161 (162)
                      +.|. +.+.|.+||+++.
T Consensus       100 ~~g~rt~~~l~~fv~~~~  117 (122)
T d2c0ga2         100 SHVDVTLDNLKAFVSANT  117 (122)
T ss_dssp             TTSCCCHHHHHHHHHHHS
T ss_pred             cCCCCCHHHHHHHHHHhc
Confidence            3454 8999999999875

>d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=99.68  E-value=8.1e-17  Score=112.36  Aligned_cols=84  Identities=19%  Similarity=0.335  Sum_probs=69.2

Q ss_pred             ceEEEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECC-----------------------CcHHHHHhcCCCCCccE
Q 031271           76 LKVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVD-----------------------WLPEAAKAFDLIDVLPT  132 (162)
Q Consensus        76 k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d-----------------------~~~~l~~~~~i~~~~Pt  132 (162)
                      |+|+|+||++||++|+.+.|.+.++.+.+ ++.++.|..+                       .+..+.+.|++ .++|+
T Consensus        32 K~vll~fwa~wC~~C~~~~p~l~~l~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v-~~~P~  109 (144)
T d1knga_          32 KVSLVNVWASWCVPCHDEAPLLTELGKDK-RFQLVGINYKDAADNARRFLGRYGNPFGRVGVDANGRASIEWGV-YGVPE  109 (144)
T ss_dssp             SCEEEEEECTTCHHHHHHHHHHHHHTTCT-TSEEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTSHHHHHTTC-CSSCE
T ss_pred             CEEEEEeeccccccccccCchhhhhhhcc-CceeEEEEeeechHHHHHHHHHcCCccccccccccchhhhhcCc-cccce
Confidence            88999999999999999999999987766 4444444432                       34568999999 99999


Q ss_pred             EEEE-cCCeEEEEEcCC-CHHHHHHHHHHHh
Q 031271          133 FVLV-KRGKEIDRVVGA-KKDELQMKTEKRR  161 (162)
Q Consensus       133 iv~~-~~Gk~i~~~~g~-~~~~l~~~l~~~~  161 (162)
                      ++++ ++|+++.++.|. +.+.|++.|++.+
T Consensus       110 ~~liD~~G~i~~~~~G~~~~~~l~~~i~~~l  140 (144)
T d1knga_         110 TFVVGREGTIVYKLVGPITPDNLRSVLLPQM  140 (144)
T ss_dssp             EEEECTTSBEEEEEESCCCHHHHHHTHHHHH
T ss_pred             EEEEcCCCeEEEEEeCCCCHHHHHHHHHHHH
Confidence            8887 799999999998 8888888777654

>d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol-disulfide isomerase/thioredoxin TTHA0593
species: Thermus thermophilus [TaxId: 274]

Probab=99.68  E-value=2.3e-16  Score=115.03  Aligned_cols=105  Identities=19%  Similarity=0.142  Sum_probs=84.3

Q ss_pred             ccccceeEEecCCCeeeeeC---ceEEEEEecCCChhhhhhhHHHHHHHHhcCC-cEEEEEEC-----------------
Q 031271           56 YCINEMVLNINDGGNVVFWV---LKVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDV-----------------  114 (162)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~---k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~-v~f~~vd~-----------------  114 (162)
                      ...|+|++.+.+|+.+..++   |+|||+||++||++|+...|.|.++.++|.+ +.|+.++.                 
T Consensus        10 ~~aPdF~l~d~~G~~~~Lsd~kGk~vvl~FwatwCp~C~~~~p~l~~l~~~y~~~v~~v~i~snd~~~~~~~~~e~~~~~   89 (187)
T d2cvba1          10 SPLIDAELPDPRGGRYRLSQFHEPLLAVVFMCNHCPYVKGSIGELVALAERYRGKVAFVGINANDYEKYPEDAPEKMAAF   89 (187)
T ss_dssp             CBCCCCEEECTTSCEEEGGGCCSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTTTEEEEEEECCCTTTCGGGSHHHHHHH
T ss_pred             CccCccEeecCCCCEEEHHHhCCCeEEEEEeCCCCccchhhhhhhhhhhhhccccceeeeeeccccccccccchHHHHHH
Confidence            35688999999999887765   9999999999999999999999999999976 78887763                 


Q ss_pred             ------------CCcHHHHHhcCCCCCccEEEEE-cCCeEEEEEc-----C----CCHHHHHHHHHHHh
Q 031271          115 ------------DWLPEAAKAFDLIDVLPTFVLV-KRGKEIDRVV-----G----AKKDELQMKTEKRR  161 (162)
Q Consensus       115 ------------d~~~~l~~~~~i~~~~Ptiv~~-~~Gk~i~~~~-----g----~~~~~l~~~l~~~~  161 (162)
                                  |....+++.|++ ..+|+++++ ++|+++.+-.     +    .+...|+++|+..+
T Consensus        90 ~~~~~~~~p~l~D~~~~~~~~~~v-~~~P~~~liD~~G~i~y~G~idd~~~~~~~~~~~~L~~Ai~~ll  157 (187)
T d2cvba1          90 AEEHGIFFPYLLDETQEVAKAYRA-LRTPEVFLFDERRLLRYHGRVNDNPKDPSKVQSHDLEAAIEALL  157 (187)
T ss_dssp             HHHHTCCSCEEECSSSHHHHHTTC-CEESEEEEECTTCBEEEEECSSSCTTCGGGCCCCHHHHHHHHHH
T ss_pred             HHHhCCcceeeechhhhhcccccc-cceeeEEEEcCCCeEEEEeeecCCCCCCCCCCHHHHHHHHHHHH
Confidence                        234468999999 999988888 7898876421     0    12345788777665

>d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=99.62  E-value=3.3e-15  Score=107.32  Aligned_cols=104  Identities=18%  Similarity=0.308  Sum_probs=83.0

Q ss_pred             cccceeEEecCCCeeeeeC---ceEEEEEecCCChhhhhhhHHHHHHHHhcCC--cEEEEEECCCc-----H--------
Q 031271           57 CINEMVLNINDGGNVVFWV---LKVVIYYTAAWCGPCKFIEPYVKDFAAMYTD--VQFIKIDVDWL-----P--------  118 (162)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~---k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~--v~f~~vd~d~~-----~--------  118 (162)
                      ..|+|++.+.+|+.+..++   |+|||+||++||++|+...+.+.++.+.+.+  +.++.|.++..     .        
T Consensus        35 ~~Pdf~l~d~~G~~v~L~~~kGK~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~  114 (176)
T d1jfua_          35 KLPDLAFEDADGKPKKLSDFRGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTRDPEKPKTFLKEANL  114 (176)
T ss_dssp             BCCCCEEECTTSCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBTTEEEEEEECCCSCTTHHHHHHHHTTC
T ss_pred             cCCCeEEECCCcCEEeHHHhCCCEEEEEeccCcccchHHHHHhhhhccccccccccccccccccccchhhhhhhHhhhCC
Confidence            4789999999999997775   9999999999999999999999999887753  66666655411     1        


Q ss_pred             ---------------HHHHhcCCCCCccEEEEE-cCCeEEEEEcCC---CHHHHHHHHHHHh
Q 031271          119 ---------------EAAKAFDLIDVLPTFVLV-KRGKEIDRVVGA---KKDELQMKTEKRR  161 (162)
Q Consensus       119 ---------------~l~~~~~i~~~~Ptiv~~-~~Gk~i~~~~g~---~~~~l~~~l~~~~  161 (162)
                                     .+...|++ .++|+++++ ++|+++.++.|.   +.+++++.|+.++
T Consensus       115 ~~~~~~~d~~~~~~~~~~~~~~v-~~~P~~~lID~~G~I~~~~~G~~~~~~~e~~~~l~al~  175 (176)
T d1jfua_         115 TRLGYFNDQKAKVFQDLKAIGRA-LGMPTSVLVDPQGCEIATIAGPAEWASEDALKLIRAAT  175 (176)
T ss_dssp             CTTCCEECTTCHHHHHHHTTTCC-SSSSEEEEECTTSBEEEEEESCCCTTSHHHHHHHHHHH
T ss_pred             cceeeeecchhHHHHHHhhhccC-CCCCeEEEEcCCCEEEEEEECCCCCChHHHHHHHHHhc
Confidence                           12334566 789998777 899999999886   5688889988765

>d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Trypanosoma brucei brucei [TaxId: 5702]

Probab=99.61  E-value=1.7e-15  Score=105.64  Aligned_cols=88  Identities=23%  Similarity=0.483  Sum_probs=70.4

Q ss_pred             ccccceeEEecCCCeeeeeC---ceEEEEEecCCChhhhhhhHHHHHHHHhcC---CcEEEEEECCCc------------
Q 031271           56 YCINEMVLNINDGGNVVFWV---LKVVIYYTAAWCGPCKFIEPYVKDFAAMYT---DVQFIKIDVDWL------------  117 (162)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~---k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~---~v~f~~vd~d~~------------  117 (162)
                      ...|.+.....+|..+..++   |+|+|+|||+||++|+...|.|.++.++|.   ++.++.|+.|..            
T Consensus         6 k~~P~~~~~~~~~~~v~l~~~~GK~vvl~FwatwC~~C~~~~p~l~~l~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~   85 (144)
T d1o73a_           6 KYLPGATNLLSKSGEVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMP   85 (144)
T ss_dssp             GTSCTTCCBBCTTSCBCSGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCS
T ss_pred             cCCCCceeeccCCCEEeHHHhCCCEEEEEeChhhCccchhhhHHHHHHHHHHhhccCeEEEEEecchhHHHHHHHHHhcc
Confidence            35677777777777675555   899999999999999999999999998884   388888887632            


Q ss_pred             ------------HHHHHhcCCCCCccEEEEE-cC-CeEEEE
Q 031271          118 ------------PEAAKAFDLIDVLPTFVLV-KR-GKEIDR  144 (162)
Q Consensus       118 ------------~~l~~~~~i~~~~Ptiv~~-~~-Gk~i~~  144 (162)
                                  .++.+.|++ .++|+++++ ++ |+++.+
T Consensus        86 ~~~~~~~~~~~~~~l~~~y~v-~~~Pt~~lID~~~G~Ii~~  125 (144)
T d1o73a_          86 WLALPFDQRSTVSELGKTFGV-ESIPTLITINADTGAIIGT  125 (144)
T ss_dssp             SEECCTTCHHHHHHHHHHHTC-CSSSEEEEEETTTCCEEES
T ss_pred             ccceeeeccchHHHHHHHcCC-CcCCEEEEEECCCCEEEee
Confidence                        147889999 999998888 55 777753

>d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: UAS domain
domain: UBX domain-containing protein 7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=2.3e-15  Score=105.78  Aligned_cols=103  Identities=11%  Similarity=0.141  Sum_probs=84.2

Q ss_pred             eechhhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhhhhhhHHH---HHHH
Q 031271           25 LQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYV---KDFA  101 (162)
Q Consensus        25 i~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~~~l---~~~~  101 (162)
                      +....+|++.++.|++.+|++                                 +|+||++||++|+.|.+..   +++.
T Consensus        25 i~~~~~~~~A~~~Ak~~~K~l---------------------------------lV~~~~~~C~~C~~m~~~v~~d~~V~   71 (147)
T d2dlxa1          25 LMHKGSFETAKECGQMQNKWL---------------------------------MINIQNVQDFACQCLNRDVWSNEAVK   71 (147)
T ss_dssp             TSCCSCHHHHHHHHHHHTCEE---------------------------------EEEEECSCTTTHHHHHHHTTTCHHHH
T ss_pred             ccccCCHHHHHHHHHHcCCcE---------------------------------EEEEecCCCCchHHHHHhccCCHHHH
Confidence            344678999999999999999                                 9999999999999997755   5555


Q ss_pred             HhcC-CcEEEEEECCCc--HHHHHhcCCCCCccEEEEE--cCCeEEEEEcCCCHHHHHHHHHHHh
Q 031271          102 AMYT-DVQFIKIDVDWL--PEAAKAFDLIDVLPTFVLV--KRGKEIDRVVGAKKDELQMKTEKRR  161 (162)
Q Consensus       102 ~~~~-~v~f~~vd~d~~--~~l~~~~~i~~~~Ptiv~~--~~Gk~i~~~~g~~~~~l~~~l~~~~  161 (162)
                      +.+. ++.++.+|.+..  ..++++|++ .++|+++++  .+|+.+....+.+++++.+.|++.+
T Consensus        72 ~~l~~~fV~~~v~~~~~e~~~~~~~y~v-~~~Pti~~idp~~ge~v~~~~~~~~~~fl~~L~~fl  135 (147)
T d2dlxa1          72 NIIREHFIFWQVYHDSEEGQRYIQFYKL-GDFPYVSILDPRTGQKLVEWHQLDVSSFLDQVTGFL  135 (147)
T ss_dssp             HHHHHTEEEEEEESSSHHHHHHHHHHTC-CSSSEEEEECTTTCCCCEEESSCCHHHHHHHHHHHH
T ss_pred             HHHhhheeEeeecccchhhhhhhhheec-CceeEEEEEeCCCCeEecccCCCCHHHHHHHHHHHH
Confidence            5443 488899998765  678999999 999999999  3688887776669998887777654

>d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.59  E-value=5.5e-15  Score=102.61  Aligned_cols=87  Identities=20%  Similarity=0.385  Sum_probs=72.8

Q ss_pred             ccccceeEEecCCCeeeeeC---ceEEEEEecCCChhhhhhhHHHHHHHHhcC---CcEEEEEECCCc------------
Q 031271           56 YCINEMVLNINDGGNVVFWV---LKVVIYYTAAWCGPCKFIEPYVKDFAAMYT---DVQFIKIDVDWL------------  117 (162)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~---k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~---~v~f~~vd~d~~------------  117 (162)
                      .+.|++.+.+.+|+.+..++   |+|+|+||++||++|+...|.+.++.++|.   ++.++.++.+..            
T Consensus         4 k~~P~~~~~~~~g~~v~l~~l~GK~vll~Fwa~wC~~C~~~~~~l~~l~~~~~~~~~~~~v~is~d~~~~~~~~~~~~~~   83 (144)
T d1o8xa_           4 KYLPGIEKLRRGDGEVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMP   83 (144)
T ss_dssp             GTSTTCCEEEETTEEEEGGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCS
T ss_pred             CCCCCcEeEcCCCCEEeHHHhCCCEEEEEeccccccccccccchhHHhhhhcccccccccccccccccHHHHHHHHhhcc
Confidence            46788999999999887765   999999999999999999999999999884   377777777632            


Q ss_pred             ------------HHHHHhcCCCCCccEEEEE-cC-CeEEE
Q 031271          118 ------------PEAAKAFDLIDVLPTFVLV-KR-GKEID  143 (162)
Q Consensus       118 ------------~~l~~~~~i~~~~Ptiv~~-~~-Gk~i~  143 (162)
                                  ..+.+.|++ .++|+++++ ++ |+++.
T Consensus        84 ~~~~~~~~~d~~~~l~~~y~v-~~~Pt~~liD~~~G~Vi~  122 (144)
T d1o8xa_          84 WLAVPFAQSEAVQKLSKHFNV-ESIPTLIGVDADSGDVVT  122 (144)
T ss_dssp             SEECCGGGHHHHHHHHHHTTC-CSSSEEEEEETTTCCEEE
T ss_pred             ccceeeecccchhhHHHHcCC-CcCCEEEEEeCCCCEEEE
Confidence                        258889999 999998888 46 67764

>d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin II
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.59  E-value=5e-15  Score=103.47  Aligned_cols=82  Identities=23%  Similarity=0.415  Sum_probs=62.9

Q ss_pred             eeEEecCCCeeeeeC---ceEEEEEecCCChhhhhhhHHHHHHHHhcC---CcEEEEEECCCcH----------------
Q 031271           61 MVLNINDGGNVVFWV---LKVVIYYTAAWCGPCKFIEPYVKDFAAMYT---DVQFIKIDVDWLP----------------  118 (162)
Q Consensus        61 ~~~~~~~~~~~~~~~---k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~---~v~f~~vd~d~~~----------------  118 (162)
                      ..+.+.+|..+..++   |+|+|+|||+||++|+...|.|.++.++|.   ++.++.|+.|...                
T Consensus        11 ~~~l~~~~~~v~ls~l~GK~vll~FwAtWC~pC~~~~p~L~~l~~~~~~~~~~~vi~vs~D~~~~~~~~~~~~~~~~~~~   90 (144)
T d1i5ga_          11 TNVLKGAAADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALP   90 (144)
T ss_dssp             SEEEETTEEEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECC
T ss_pred             hhhccCCCCEeeHHHcCCCEEEEEEEecCCchHhhhhHhHHHHHHHHHhccCcEEEEEeccccHHHHHHHHHhCCCCcee
Confidence            334444555554443   788999999999999999999999988885   3778888876332                


Q ss_pred             --------HHHHhcCCCCCccEEEEE-cC-CeEEE
Q 031271          119 --------EAAKAFDLIDVLPTFVLV-KR-GKEID  143 (162)
Q Consensus       119 --------~l~~~~~i~~~~Ptiv~~-~~-Gk~i~  143 (162)
                              .+.+.|++ .++|+++++ ++ |+++.
T Consensus        91 ~~d~~~~~~l~~~y~v-~~iPt~~lid~~~G~vi~  124 (144)
T d1i5ga_          91 FEDRKGMEFLTTGFDV-KSIPTLVGVEADSGNIIT  124 (144)
T ss_dssp             TTCHHHHHHHHHHTTC-CSSSEEEEEETTTCCEEE
T ss_pred             eEChHHHHHHHHHCCC-CCcCEEEEEeCCCCEEEe
Confidence                    36788999 999998887 55 78775

>d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein p19, TLP19
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=1.5e-15  Score=104.77  Aligned_cols=98  Identities=12%  Similarity=0.347  Sum_probs=75.1

Q ss_pred             hhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhhhhhhHHHH---HHHHhcC
Q 031271           29 HQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYVK---DFAAMYT  105 (162)
Q Consensus        29 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~~~l~---~~~~~~~  105 (162)
                      .+|++.++.|+.++|++                                 +|+||++||++|+.+.|.+.   ++.+...
T Consensus        12 ~~~~~al~~A~~~~Kpv---------------------------------lv~F~a~wC~~C~~~~~~~~~~~~~~~~~~   58 (135)
T d1sena_          12 RTLEDGKKEAAASGLPL---------------------------------MVIIHKSWCGACKALKPKFAESTEISELSH   58 (135)
T ss_dssp             CCHHHHHHHHHHHTCCE---------------------------------EEEEECTTCHHHHHHHHHHHTCHHHHHHHT
T ss_pred             eEHHHHHHHHHHcCCcE---------------------------------EEEEEecCCCCceecchhhhhhHHHHHhcC
Confidence            56888999999999999                                 99999999999999999884   4434445


Q ss_pred             CcEEEEEECCCcHHHHHhc-CCCCCccEEEEE-cCCeEEEEEcCC-----------CHHHHHHHHHHH
Q 031271          106 DVQFIKIDVDWLPEAAKAF-DLIDVLPTFVLV-KRGKEIDRVVGA-----------KKDELQMKTEKR  160 (162)
Q Consensus       106 ~v~f~~vd~d~~~~l~~~~-~i~~~~Ptiv~~-~~Gk~i~~~~g~-----------~~~~l~~~l~~~  160 (162)
                      ++..+.||.+..++....+ .. ..+|+++++ ++|+.+..+.|.           +.+.+.+.+++.
T Consensus        59 ~fv~v~vd~~~~~~~~~~~~~~-~~~Pt~~~~d~~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a  125 (135)
T d1sena_          59 NFVMVNLEDEEEPKDEDFSPDG-GYIPRILFLDPSGKVHPEIINENGNPSYKYFYVSAEQVVQGMKEA  125 (135)
T ss_dssp             TSEEEEEEGGGSCSCGGGCTTC-SCSSEEEEECTTSCBCTTCCCTTSCTTSTTCCCSHHHHHHHHHHH
T ss_pred             CcEEEeCCCCcCHHHHHHHhhc-ccceeEEEECCCCeEEEEecCCCCCcchhccCCCHHHHHHHHHHH
Confidence            6889999988777766544 45 679999998 789988766552           456665555543

>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like structure containing protein C330018D20Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.53  E-value=3e-15  Score=98.64  Aligned_cols=84  Identities=18%  Similarity=0.272  Sum_probs=69.2

Q ss_pred             eeeCceEEEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCCCHH
Q 031271           72 VFWVLKVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKD  151 (162)
Q Consensus        72 ~~~~k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~~~~  151 (162)
                      ..+.-|+|+.||++||++|.++.+.|+++..+|+ ..++.+|++.++++.++|++ . +|++++  +|+.+.. ...+.+
T Consensus        12 ~~~~~p~i~lft~~~C~~C~~a~~~L~~~~~~~~-~~~v~vd~~~~~~l~~~y~~-~-VPvl~i--dg~~~~~-g~~d~~   85 (100)
T d1wjka_          12 SNRALPVLTLFTKAPCPLCDEAKEVLQPYKDRFI-LQEVDITLPENSTWYERYKF-D-IPVFHL--NGQFLMM-HRVNTS   85 (100)
T ss_dssp             SCCCCCEEEEEECSSCHHHHHHHHHTSTTSSSSE-EEEEETTSSTTHHHHHHSSS-S-CSEEEE--SSSEEEE-SSCCHH
T ss_pred             cCCCCCEEEEEECCCCCChHHHHHHHHHhhhhcc-eEEEecccccCHHHHHHhcc-c-CCceee--cCceEEe-CCCCHH
Confidence            3445677999999999999999999999987774 67788899999999999999 6 997654  7877632 234999


Q ss_pred             HHHHHHHHHh
Q 031271          152 ELQMKTEKRR  161 (162)
Q Consensus       152 ~l~~~l~~~~  161 (162)
                      +|+++|++..
T Consensus        86 ~L~~~L~~l~   95 (100)
T d1wjka_          86 KLEKQLRKLS   95 (100)
T ss_dssp             HHHHHHHSSS
T ss_pred             HHHHHHHHHh
Confidence            9999998753

>d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Endoplasmic reticulum protein ERP29, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.51  E-value=4.2e-15  Score=101.07  Aligned_cols=79  Identities=15%  Similarity=0.143  Sum_probs=61.6

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCC---c-----EEEEEECCCcHHHHHhcC--CCCCccEEEEEcCCeE--EEEEc
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTD---V-----QFIKIDVDWLPEAAKAFD--LIDVLPTFVLVKRGKE--IDRVV  146 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~---v-----~f~~vd~d~~~~l~~~~~--i~~~~Ptiv~~~~Gk~--i~~~~  146 (162)
                      +|.||++||..|.  .|.++++++.+.+   .     .+..+|++.+++++.+|+  | .++||+++|++|+.  ...+.
T Consensus        25 lV~F~~~wc~~~~--~~~~~~la~~~~~~~~~~~~~V~~~~vd~~~n~~l~~~~~~~I-~~yPTi~~f~~G~~~~~~~y~  101 (122)
T d1g7ea_          25 LVKFDTQYPYGEK--QDEFKRLAENSASSDDLLVAEVGISDYGDKLNMELSEKYKLDK-ESYPVFYLFRDGDFENPVPYS  101 (122)
T ss_dssp             EEEEECSSCCTTT--THHHHHHHHHGGGCSSEEEEEEESCCTTSCHHHHHHHHHTCSS-SSCEEEEEEESSCCCCCEEEE
T ss_pred             EEEEecCCcCccc--CHHHHHHHHHHHHHHHHhhhccceeeccccccHHHHHhhcccc-cCCCeEEEEecCcccCceecC
Confidence            9999999998886  4788888887743   3     333446667889998875  6 79999999998853  23556


Q ss_pred             CC-CHHHHHHHHHHH
Q 031271          147 GA-KKDELQMKTEKR  160 (162)
Q Consensus       147 g~-~~~~l~~~l~~~  160 (162)
                      |. +.+.|.+||+++
T Consensus       102 G~rt~~~l~~fi~~~  116 (122)
T d1g7ea_         102 GAVKVGAIQRWLKGQ  116 (122)
T ss_dssp             SCCCHHHHHHHHHTT
T ss_pred             CCCCHHHHHHHHHhc
Confidence            76 999999999986

>d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein PA1234
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.33  E-value=2.7e-12  Score=91.18  Aligned_cols=70  Identities=10%  Similarity=0.216  Sum_probs=60.3

Q ss_pred             EEEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHHHHHhc---CCCCCccEEEEE-cCCeEEEEEcCC
Q 031271           78 VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAF---DLIDVLPTFVLV-KRGKEIDRVVGA  148 (162)
Q Consensus        78 vvv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~l~~~~---~i~~~~Ptiv~~-~~Gk~i~~~~g~  148 (162)
                      +++.||++||++|++..|.|+++++.++++.+..|+.+.+++....|   +. ..+|.++++ .++..+.++.+.
T Consensus        57 ~~l~~~~tWC~~C~~~~P~l~~l~~~~~~~~~~~i~~d~~~~~~~~~~~~~~-~~~p~~~~~d~~~~~~~~~~~~  130 (166)
T d1z6na1          57 RLLVAGEMWCPDCQINLAALDFAQRLQPNIELAIISKGRAEDDLRQRLALER-IAIPLVLVLDEEFNLLGRFVER  130 (166)
T ss_dssp             EEEEECCTTCHHHHHHHHHHHHHHHHCTTEEEEEECHHHHHHHTTTTTTCSS-CCSSEEEEECTTCCEEEEEESS
T ss_pred             EEEEEEeCcCccHHHHHHHHHHHHHHCCCCcEEEEECccCHHHHHHHHHhcc-ccccceeecCccchhccccccc
Confidence            38999999999999999999999999999999999999999998888   44 577887777 567777777654

>d2a4va1 c.47.1.10 (A:59-214) Peroxiredoxin dot5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin dot5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.28  E-value=4e-11  Score=84.27  Aligned_cols=106  Identities=15%  Similarity=0.042  Sum_probs=79.6

Q ss_pred             eeccccceeEEecCCCeeeeeC-----ceEEEEEe-cCCChhhhhhhHHHHHHHHhcCC-cEEEEEECC-----------
Q 031271           54 LIYCINEMVLNINDGGNVVFWV-----LKVVIYYT-AAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVD-----------  115 (162)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~-----k~vvv~F~-a~wC~~C~~~~~~l~~~~~~~~~-v~f~~vd~d-----------  115 (162)
                      .....|+|.+.+.+|+.+..++     +.|+++|| +.||+.|....+.|.+...+|.+ ..++.|..|           
T Consensus         7 vG~~aP~f~L~~~~g~~~~l~~~~~k~~~vvlff~p~~~cp~C~~~~~~~~~~~~~~~~~~~~~~is~d~~~~~~~f~~~   86 (156)
T d2a4va1           7 IGDPIPDLSLLNEDNDSISLKKITENNRVVVFFVYPRASTPGSTRQASGFRDNYQELKEYAAVFGLSADSVTSQKKFQSK   86 (156)
T ss_dssp             TTCBCCSCEEECTTSCEEEHHHHHHHCSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTTTCEEEEEESCCHHHHHHHHHH
T ss_pred             CCCCCCCeEEECCCCCEEeeHHHcCCccEEEEEecccccCcchhhhhHHHHHHHHHHhhccceeeeccchhhhHHhhhcc
Confidence            4456789999999999987655     44566666 88999999999999998888865 667778775           


Q ss_pred             ----------CcHHHHHhcCCCCCcc------EEEEEcCCeEEEEEcCCCH--------HHHHHHHHHH
Q 031271          116 ----------WLPEAAKAFDLIDVLP------TFVLVKRGKEIDRVVGAKK--------DELQMKTEKR  160 (162)
Q Consensus       116 ----------~~~~l~~~~~i~~~~P------tiv~~~~Gk~i~~~~g~~~--------~~l~~~l~~~  160 (162)
                                ...+++++||+ ...|      ++++..+|+...++.+..+        +++.++|+++
T Consensus        87 ~~l~f~~L~D~~~~v~~~ygv-~~~~~~~~~r~~~i~~dg~i~~~~~~~~~~~~~~~~~~evl~~lk~l  154 (156)
T d2a4va1          87 QNLPYHLLSDPKREFIGLLGA-KKTPLSGSIRSHFIFVDGKLKFKRVKISPEVSVNDAKKEVLEVAEKF  154 (156)
T ss_dssp             HTCSSEEEECTTCHHHHHHTC-BSSSSSCBCCEEEEEETTEEEEEEESCCHHHHHHHHHHHHHHHHHHT
T ss_pred             cCccceeccchHHHHHHHcCC-CccccCCeeEEEEEEECCeEEEEEEEeCCCCCcchHHHHHHHHHHHh
Confidence                      33468889988 6666      4566689999999887632        3455556554

>d2cx4a1 c.47.1.10 (A:4-163) Bacterioferritin comigratory protein {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Bacterioferritin comigratory protein
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=99.24  E-value=2.6e-11  Score=84.96  Aligned_cols=105  Identities=19%  Similarity=0.159  Sum_probs=79.0

Q ss_pred             ccccceeEEecCCCeeeee-----CceEEEEEe-cCCChhhhhhhHHHHHHHHhcCC--cEEEEEECCC-----------
Q 031271           56 YCINEMVLNINDGGNVVFW-----VLKVVIYYT-AAWCGPCKFIEPYVKDFAAMYTD--VQFIKIDVDW-----------  116 (162)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~-----~k~vvv~F~-a~wC~~C~~~~~~l~~~~~~~~~--v~f~~vd~d~-----------  116 (162)
                      ...|+|.+.+.+|+.+..+     .|+|+|+|| ++||++|....+.+.++..++.+  +.++.+..+.           
T Consensus         6 ~~aPdF~L~~~~G~~~~Lsd~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~   85 (160)
T d2cx4a1           6 EKAPDFTLPNQDFEPVNLYEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKANAEVLAISVDSPWCLKKFKDEN   85 (160)
T ss_dssp             SBCCCCEECCTTSCCEEHHHHHTTSSCEEEEECSCTTCHHHHHHHHHHHHTCTTTSTTCCEEEEEESSCHHHHHHHHHHH
T ss_pred             CCCcCeEeECCCCCEEehHHHhhCCCEEEEEecccccCCchhhhhhhhhcccccccccccccccccccchhhhhhhcccc
Confidence            3468899999999988754     378999998 89999999999999988887764  7778777652           


Q ss_pred             ----------cHHHHHhcCCCC----------CccEEEEE-cCCeEEEEEcCC------CHHHHHHHHHHHh
Q 031271          117 ----------LPEAAKAFDLID----------VLPTFVLV-KRGKEIDRVVGA------KKDELQMKTEKRR  161 (162)
Q Consensus       117 ----------~~~l~~~~~i~~----------~~Ptiv~~-~~Gk~i~~~~g~------~~~~l~~~l~~~~  161 (162)
                                ...+++.||+ .          ..|+++++ ++|++..++.+.      +.+++.+.+++..
T Consensus        86 ~~~~~~l~D~~~~~~~~~gv-~~~~~~~~~~~~~~~~flId~~G~I~~~~~~~~~~~~~~~~eil~~l~~l~  156 (160)
T d2cx4a1          86 RLAFNLLSDYNREVIKLYNV-YHEDLKGLKMVAKRAVFIVKPDGTVAYKWVTDNPLNEPDYDEVVREANKIA  156 (160)
T ss_dssp             TCSSEEEECTTSHHHHHTTC-EEEEETTEEEEECCEEEEECTTSBEEEEEECSSTTCCCCHHHHHHHHHHHH
T ss_pred             eeeEEEeecCCcchHHHcCc-cccccccccccceeeEEEEcCCCEEEEEEEeCCCCCCCCHHHHHHHHHHHc
Confidence                      3457778876 3          35665555 899998877543      4567777776653

>d1qxha_ c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Escherichia coli [TaxId: 562]

Probab=99.11  E-value=4.7e-10  Score=79.24  Aligned_cols=93  Identities=14%  Similarity=0.082  Sum_probs=73.1

Q ss_pred             eeccccceeEEecCCCeeeeeC---ceEEEEEe-cCCChhhhhhhHHHHHHHHhcCCcEEEEEECC--------------
Q 031271           54 LIYCINEMVLNINDGGNVVFWV---LKVVIYYT-AAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVD--------------  115 (162)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~---k~vvv~F~-a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d--------------  115 (162)
                      .....|+|++.+.+|+.+..++   |++||+|| +.||+.|....+.|.+...++.++.++.|..|              
T Consensus        20 vG~~APdF~L~~~~g~~vsLsd~~GK~vvl~f~~~~~~p~C~~~~~~l~~~~~~~~~~~vv~Is~d~~~~~~~~~~~~~~   99 (164)
T d1qxha_          20 AGSKAQTFTLVAKDLSDVTLGQFAGKRKVLNIFPSIDTGVCAASVRKFNQLATEIDNTVVLCISADLPFAQSRFCGAEGL   99 (164)
T ss_dssp             TTSBCCCCEEECTTSCEEEGGGGTTSEEEEEECSCSCSSCCCHHHHHHHHHHHTSTTEEEEEEESSCHHHHTTCCSSTTC
T ss_pred             CCCCCCCeEEECCCCCEEeHHHhCCCeEEEEEecchhcccchHHHHHHHHHHHhhccceeeeEEcCCHHHHHHHHHHhCC
Confidence            3445688999999999998876   88999888 67999999999999999988888888888764              


Q ss_pred             ---------CcHHHHHhcCCCC---------CccEEEEE-cCCeEEEEEcC
Q 031271          116 ---------WLPEAAKAFDLID---------VLPTFVLV-KRGKEIDRVVG  147 (162)
Q Consensus       116 ---------~~~~l~~~~~i~~---------~~Ptiv~~-~~Gk~i~~~~g  147 (162)
                               ...++++.||+ .         ..|+++++ ++|++......
T Consensus       100 ~~~~~~~~d~~~~~~~~ygv-~~~~~~~~g~~~ra~fvID~~G~I~y~~~~  149 (164)
T d1qxha_         100 NNVITLSTFRNAEFLQAYGV-AIADGPLKGLAARAVVVIDENDNVIFSQLV  149 (164)
T ss_dssp             TTEEEEECTTCHHHHHHTTC-BBCSSTTTTSBCCEEEEECTTSBEEEEEEC
T ss_pred             CcceeeccccchhhHHhcCe-EeecCcccCcccCEEEEEcCCCEEEEEEEc
Confidence                     24568888986 3         12555555 89999876543

>d1e2ya_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.11  E-value=1.5e-10  Score=81.98  Aligned_cols=104  Identities=15%  Similarity=0.136  Sum_probs=75.9

Q ss_pred             ecccccee----EEecCCCeeeeeC---ceEEEEEe-cCCChhhhhhhHHHHHHHHhcCC--cEEEEEECCC--------
Q 031271           55 IYCINEMV----LNINDGGNVVFWV---LKVVIYYT-AAWCGPCKFIEPYVKDFAAMYTD--VQFIKIDVDW--------  116 (162)
Q Consensus        55 ~~~~~~~~----~~~~~~~~~~~~~---k~vvv~F~-a~wC~~C~~~~~~l~~~~~~~~~--v~f~~vd~d~--------  116 (162)
                      ...-|+|+    +.+.+|+.++.++   |+|||+|| ++||+.|....+.|.+..++|.+  +.++.|+.|.        
T Consensus         6 G~~APdF~~~~~l~d~~g~~vsLsd~~GK~vVl~F~p~~~c~~C~~e~~~l~~~~~~~~~~~~~v~~is~d~~~~~~~~~   85 (167)
T d1e2ya_           6 NHPAPEFDDMALMPNGTFKKVSLSSYKGKYVVLFFYPMDFTFVCPTEIIQFSDDAKRFAEINTEVISCSCDSEYSHLQWT   85 (167)
T ss_dssp             TSBCCCCEEEEECSSSCEEEEEGGGGTTSEEEEEECSCSSCSSCCHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHH
T ss_pred             CCCCCCCcccccccCCCCcEEeHHHHCCCeEEEEEcccccccccchhhHHHHHHHHHhhcCceEEEeecCCcHHhHHHHH
Confidence            34467787    4567888887766   88999999 99999999999999999888854  7888887763        


Q ss_pred             --------------------cHHHHHhcCCCC------CccEEEEE-cCCeEEEEEc-----CCCHHHHHHHHHH
Q 031271          117 --------------------LPEAAKAFDLID------VLPTFVLV-KRGKEIDRVV-----GAKKDELQMKTEK  159 (162)
Q Consensus       117 --------------------~~~l~~~~~i~~------~~Ptiv~~-~~Gk~i~~~~-----g~~~~~l~~~l~~  159 (162)
                                          ...+++.|++ .      ..|+++++ ++|++...+.     +.+.+++++.|+.
T Consensus        86 ~~~~~~~~~~~~~~~~l~d~~~~~~~~y~v-~~~~~g~~~r~tfvID~~G~Ir~~~~~~~~~~~~~~evL~~l~a  159 (167)
T d1e2ya_          86 SVDRKKGGLGPMAIPMLADKTKAIARAYGV-LDEDSGVAYRGVFIIDPNGKLRQIIINDMPIGRNVEEVIRLVEA  159 (167)
T ss_dssp             HSCGGGTCCCCCSSCEEECTTCHHHHHHTC-EETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHH
T ss_pred             hhHHHhcccccccccccccchhHHHHHcCC-CcccCCCceeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHH
Confidence                                2346777776 3      34554444 8998876653     2356777777764

>d2f8aa1 c.47.1.10 (A:12-195) Glutathione peroxidase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Glutathione peroxidase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=6.2e-10  Score=80.26  Aligned_cols=56  Identities=9%  Similarity=0.003  Sum_probs=46.1

Q ss_pred             ceeEEecC-CCeeeeeC---ceEEEEEecCCChhhhhhhHHHHHHHHhcC--CcEEEEEECC
Q 031271           60 EMVLNIND-GGNVVFWV---LKVVIYYTAAWCGPCKFIEPYVKDFAAMYT--DVQFIKIDVD  115 (162)
Q Consensus        60 ~~~~~~~~-~~~~~~~~---k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~--~v~f~~vd~d  115 (162)
                      ++++.+.+ |+.+..++   |+|+|.+||+||++|.+..+.|+++.++|.  ++.++.+-++
T Consensus         5 df~~~~l~~g~~vsL~~ykGKvvLivN~AS~Cg~t~~~y~~L~~L~~ky~~~g~~Il~fP~n   66 (184)
T d2f8aa1           5 AFSARPLAGGEPVSLGSLRGKVLLIENVASLGGTTVRDYTQMNELQRRLGPRGLVVLGFPCN   66 (184)
T ss_dssp             GCEECBTTCSSCEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECC
T ss_pred             eeEEEECCCCCEecHHHcCCCEEEEEEecccCCcchhhhHHHHHhhhhhcccceeEEEeecc
Confidence            57777765 56676655   999999999999999999999999999986  3777777654

>d1xvwa1 c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c/MT2298 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Putative peroxiredoxin Rv2238c/MT2298
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.05  E-value=1.3e-09  Score=75.74  Aligned_cols=104  Identities=12%  Similarity=0.079  Sum_probs=75.6

Q ss_pred             ccccceeEEecCCCeeeeeC----ceEEEEE-ecCCChhhhhhhHHHHHHHHhcCC--cEEEEEECCC------------
Q 031271           56 YCINEMVLNINDGGNVVFWV----LKVVIYY-TAAWCGPCKFIEPYVKDFAAMYTD--VQFIKIDVDW------------  116 (162)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~----k~vvv~F-~a~wC~~C~~~~~~l~~~~~~~~~--v~f~~vd~d~------------  116 (162)
                      ...|+|++.+.+|+.+..++    +++++.| ++.||+.|....+.+.+..+++.+  +.++.++.|.            
T Consensus         6 ~~aPdF~l~d~~G~~~slsd~~g~~~vvl~~~~~~~cp~C~~e~~~l~~~~~~~~~~~~~vi~vs~d~~~~~~~~~~~~~   85 (153)
T d1xvwa1           6 ATAPDFTLRDQNQQLVTLRGYRGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFENDDSAALAISVGPPPTHKIWATQSG   85 (153)
T ss_dssp             SBCCCCEEECTTSCEEEGGGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSSSEEEEEEESCCHHHHHHHHHHHT
T ss_pred             CCCcCeEEECCCCCEEeHHHHcCCCcEEEEecccccccchhhhhhhhhhhhhhhcccccccccccchhhhHHHHHhhhhc
Confidence            35688999999999998776    4555554 589999999999999888888864  8888887752            


Q ss_pred             -----------cHHHHHhcCCCC----Cc--cEEEEE-cCCeEEEEEcCC-----CHHHHHHHHHHH
Q 031271          117 -----------LPEAAKAFDLID----VL--PTFVLV-KRGKEIDRVVGA-----KKDELQMKTEKR  160 (162)
Q Consensus       117 -----------~~~l~~~~~i~~----~~--Ptiv~~-~~Gk~i~~~~g~-----~~~~l~~~l~~~  160 (162)
                                 ...+++.||+ .    ++  |+++++ ++|++.....+.     +...+.+.|+.+
T Consensus        86 ~~~~~l~~~~~~~~~~~~ygv-~~~~~g~~~r~tfvID~~G~I~~~~~~~~~~~~~~~~~~~~L~aL  151 (153)
T d1xvwa1          86 FTFPLLSDFWPHGAVSQAYGV-FNEQAGIANRGTFVVDRSGIIRFAEMKQPGEVRDQRLWTDALAAL  151 (153)
T ss_dssp             CCSCEEECTTTTTHHHHHTTC-EETTTTEECSEEEEECTTSBEEEEEECCTTCCCCHHHHHHHHHHT
T ss_pred             cceeEEecccccchhHHHhhh-hhhccCceeeeEEEECCCCEEEEEEEeCCCcccCHHHHHHHHHhh
Confidence                       2357788886 4    22  344444 899887665432     467777777664

>d1psqa_ c.47.1.10 (A:) Probable thiol peroxidase PsaD {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol peroxidase PsaD
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.04  E-value=2.4e-09  Score=75.41  Aligned_cols=106  Identities=11%  Similarity=-0.014  Sum_probs=79.1

Q ss_pred             eeeccccceeEEecCCCeeeeeC---ceEEEEEe-cCCChhhhhhhHHHHHHHHhcCCcEEEEEECCC------------
Q 031271           53 CLIYCINEMVLNINDGGNVVFWV---LKVVIYYT-AAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDW------------  116 (162)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~---k~vvv~F~-a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~------------  116 (162)
                      ......|+|.+.+.+|+.+..++   |++||.|| +.||+.|....+.+.+...++.++.++.|..+.            
T Consensus        17 ~vG~~aPdF~L~~~~g~~vsLsd~~gk~~vl~f~~~~~~p~C~~~~~~l~~~~~~~~~~~vv~Is~d~~~~~~~~~~~~~   96 (163)
T d1psqa_          17 QVGDKALDFSLTTTDLSKKSLADFDGKKKVLSVVPSIDTGICSTQTRRFNEELAGLDNTVVLTVSMDLPFAQKRWCGAEG   96 (163)
T ss_dssp             CTTSBCCCCEEECTTSCEEEGGGGTTSEEEEEECSCTTSHHHHHHHHHHHHHTTTCTTEEEEEEESSCHHHHHHHHHHHT
T ss_pred             CCCCCCCCeEEECCCCCEEehHHhCCcEEEEEeccccccccchhhHHHHHHHHHhhcccceEEEEeccHHHHHHHHHHcC
Confidence            34456788999999999998776   88888888 779999999999999888888888888888752            


Q ss_pred             -----------cHHHHHhcCCCCCc----c---EEEEEcCCeEEEEEcCC------CHHHHHHHHHH
Q 031271          117 -----------LPEAAKAFDLIDVL----P---TFVLVKRGKEIDRVVGA------KKDELQMKTEK  159 (162)
Q Consensus       117 -----------~~~l~~~~~i~~~~----P---tiv~~~~Gk~i~~~~g~------~~~~l~~~l~~  159 (162)
                                 ...+.+.||+ ...    |   ++++-++|++.......      +.+.++++|++
T Consensus        97 ~~~~~~~~~~~~~~~~~~ygv-~~~~~~~~~Ra~fvID~~G~I~y~~~~~~~~~~~~~~~il~alk~  162 (163)
T d1psqa_          97 LDNAIMLSDYFDHSFGRDYAL-LINEWHLLARAVFVLDTDNTIRYVEYVDNINSEPNFEAAIAAAKA  162 (163)
T ss_dssp             CTTSEEEECTTTCHHHHHHTC-BCTTTCSBCCEEEEECTTCBEEEEEECSBTTSCCCHHHHHHHHHH
T ss_pred             CcceeeeccccchhHHHhhee-ecccccceeEEEEEECCCCEEEEEEEcCCCCCCCCHHHHHHHHhc
Confidence                       2257778886 322    2   34555899997664332      34677777664

>d1xzoa1 c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.02  E-value=4.2e-09  Score=74.53  Aligned_cols=106  Identities=23%  Similarity=0.304  Sum_probs=76.2

Q ss_pred             eccccceeEEecCCCeeeeeC---ceEEEEEecCCCh-hhhhhhHHHHHHHHhc----CCcEEEEEECCC---cHH----
Q 031271           55 IYCINEMVLNINDGGNVVFWV---LKVVIYYTAAWCG-PCKFIEPYVKDFAAMY----TDVQFIKIDVDW---LPE----  119 (162)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~---k~vvv~F~a~wC~-~C~~~~~~l~~~~~~~----~~v~f~~vd~d~---~~~----  119 (162)
                      +...|+|++.+.+|+.+..++   |+|||+||.+||+ .|....+.+.++.+.+    .++.++.|.+|.   .++    
T Consensus         8 ~~~~p~F~l~d~~G~~vsl~d~~Gk~vvl~F~~t~Cp~~C~~~~~~l~~~~~~~~~~~~~v~~v~isiDp~~Dtp~~l~~   87 (172)
T d1xzoa1           8 NYEVEPFTFQNQDGKNVSLESLKGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVDPENDKPKQLKK   87 (172)
T ss_dssp             CEECCCCEEECTTSCEEETGGGTTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCCHHHHHH
T ss_pred             CCcCCCeEEEcCCCCEEcHHHhCCCEEEEEEecccccccccccchhhhhhhhhhccccccccccccccccccchHHHHHH
Confidence            445789999999999998766   9999999999997 6999999998887765    348888887752   221    


Q ss_pred             HHHh--------------------------cCCCCC----------ccEEEEE-cCCeEEEEEcCC---CHHHHHHHHHH
Q 031271          120 AAKA--------------------------FDLIDV----------LPTFVLV-KRGKEIDRVVGA---KKDELQMKTEK  159 (162)
Q Consensus       120 l~~~--------------------------~~i~~~----------~Ptiv~~-~~Gk~i~~~~g~---~~~~l~~~l~~  159 (162)
                      +++.                          |++...          .|.++++ ++|+++..+.|.   ..+++.+.|++
T Consensus        88 y~~~~~~~~~~w~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~liD~~G~i~~~~~g~~~~~~~~l~~dik~  167 (172)
T d1xzoa1          88 FAANYPLSFDNWDFLTGYSQSEIEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGPDGKVLKDYNGVENTPYDDIISDVKS  167 (172)
T ss_dssp             HHTTSCCCGGGEEEEBCSCHHHHHHHHHHHHCCCCCCCSSCCSCCSCCEEEEECTTSEEEEEEESSSSCCHHHHHHHHHH
T ss_pred             HHHHhccccccceeeccchHHHHHHHHHhheeeEEeccCCCceEeeeeEEEEEcCCCeEEEEEcCCCCCCHHHHHHHHHH
Confidence            1222                          222011          2445555 899999888876   36778777776


Q ss_pred             H
Q 031271          160 R  160 (162)
Q Consensus       160 ~  160 (162)
                      .
T Consensus       168 ~  168 (172)
T d1xzoa1         168 A  168 (172)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1wp0a1 c.47.1.10 (A:138-297) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=2e-09  Score=74.28  Aligned_cols=102  Identities=17%  Similarity=0.173  Sum_probs=73.1

Q ss_pred             ceeEEecCCCeeeeeC---ceEEEEEecCCCh-hhhhhhHHHHHHHHhc---C---CcEEEEEECCCc------------
Q 031271           60 EMVLNINDGGNVVFWV---LKVVIYYTAAWCG-PCKFIEPYVKDFAAMY---T---DVQFIKIDVDWL------------  117 (162)
Q Consensus        60 ~~~~~~~~~~~~~~~~---k~vvv~F~a~wC~-~C~~~~~~l~~~~~~~---~---~v~f~~vd~d~~------------  117 (162)
                      +|++.+.+|+.+..++   |++||+||.+||+ .|....+.+.++.+.+   .   .+.+..+..+..            
T Consensus         2 dF~L~d~~G~~vsl~d~~GK~vll~F~~t~C~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (160)
T d1wp0a1           2 PFSLTTHTGERKTDKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYVK   81 (160)
T ss_dssp             CCEEEETTSCEEEGGGGTTSEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHCTTSCCEEEEEEESCTTTCCHHHHHHHHH
T ss_pred             CeEEEcCCCCEEcHHHhCCCEEEEEEECCCCccccccchHHHHHHHHHhhcccccccccccccccCCCcccHHHHHHHHh
Confidence            4889999999998877   9999999999996 6888888887776643   1   244444444210            


Q ss_pred             ----------------HHHHHhcCCCCCc---------------cEEEEE-cCCeEEEEEcCC-CHHHHHHHHHHHhC
Q 031271          118 ----------------PEAAKAFDLIDVL---------------PTFVLV-KRGKEIDRVVGA-KKDELQMKTEKRRN  162 (162)
Q Consensus       118 ----------------~~l~~~~~i~~~~---------------Ptiv~~-~~Gk~i~~~~g~-~~~~l~~~l~~~~~  162 (162)
                                      ..+...|++ ...               ++++++ ++|+++.++.+. +++++.+.|+++++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~H~~~~~LId~~G~i~~~~~~~~~~~~i~~~I~~~lk  158 (160)
T d1wp0a1          82 EFSPKLVGLTGTREEVDQVARAYRV-YYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQNKRKGEIAASIATHMR  158 (160)
T ss_dssp             TTCTTCEEEECCHHHHHHHHHHTTC-CEEECCCCGGGCCCEEECCEEEEECTTSCEEEEEETTCCHHHHHHHHHHHHT
T ss_pred             hcCCCcccccCchHHhhHHhhhhhe-eeecccCCCCCCceEeccceEEEECCCCcEEEEECCCCCHHHHHHHHHHHHh
Confidence                            134566665 332               455555 899999988766 78899888888753

>d1we0a1 c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase AhpC {Amphibacillus xylanus [TaxId: 1449]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Amphibacillus xylanus [TaxId: 1449]

Probab=98.97  E-value=1.5e-09  Score=76.78  Aligned_cols=103  Identities=15%  Similarity=0.039  Sum_probs=73.5

Q ss_pred             ccccceeEEec----CCCeeeeeC---ceEEEEEecC-CChhhhhhhHHHHHHHHhcC--CcEEEEEECCC---------
Q 031271           56 YCINEMVLNIN----DGGNVVFWV---LKVVIYYTAA-WCGPCKFIEPYVKDFAAMYT--DVQFIKIDVDW---------  116 (162)
Q Consensus        56 ~~~~~~~~~~~----~~~~~~~~~---k~vvv~F~a~-wC~~C~~~~~~l~~~~~~~~--~v~f~~vd~d~---------  116 (162)
                      ...|+|++...    +++.++.++   |.+||+||.. ||++|....+.|.+..++|.  ++.++.|..|.         
T Consensus         5 ~~aP~F~l~~~~~g~~~~~vslsd~~GK~vvl~F~p~~~~p~C~~e~~~~~~~~~~f~~~g~~vv~IS~D~~~~~~~~~~   84 (166)
T d1we0a1           5 TEVQPFRAQAFQSGKDFFEVTEADLKGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKLGVEVYSVSTDTHFVHKAWHE   84 (166)
T ss_dssp             CBCCCCEEEEECSSSCCEEEETTTTSSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHH
T ss_pred             CcCCCCEEeeecCCcceeEeeHHHhCCCeEEEEEecccCCcHHHHHHHHHHHHHHhhcccceEEEecccccHHHHHHHhh
Confidence            34678888753    334566665   8899999966 99999999999999998884  58888888863         


Q ss_pred             ----------------cHHHHHhcCCCC------CccE-EEEEcCCeEEEEEcCC-----CHHHHHHHHHH
Q 031271          117 ----------------LPEAAKAFDLID------VLPT-FVLVKRGKEIDRVVGA-----KKDELQMKTEK  159 (162)
Q Consensus       117 ----------------~~~l~~~~~i~~------~~Pt-iv~~~~Gk~i~~~~g~-----~~~~l~~~l~~  159 (162)
                                      ...++++||+ .      ..|+ +++-++|++.....+.     +.+++.+.|+.
T Consensus        85 ~~~~~~~~~fpll~D~~~~v~~~ygv-~~~~~~~~~r~tfvID~~G~I~~~~i~~~~~~r~~~eil~~lka  154 (166)
T d1we0a1          85 NSPAVGSIEYIMIGDPSQTISRQFDV-LNEETGLADRGTFIIDPDGVIQAIEINADGIGRDASTLINKVKA  154 (166)
T ss_dssp             SCHHHHTCCSEEEECTTCHHHHHTTC-EETTTTEECEEEEEECTTSBEEEEEEECTTSCCCTTHHHHHHHH
T ss_pred             hhhhhcccccccccCcccHHHHHhCC-CccccCcccceEEEECCCCcEEEEEEcCCCCCCCHHHHHHHHHh
Confidence                            2357888887 4      3344 4444899987765433     45666666654

>d2bmxa1 c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase AhpC {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.96  E-value=2.4e-09  Score=75.70  Aligned_cols=104  Identities=13%  Similarity=0.069  Sum_probs=75.0

Q ss_pred             cccceeEEecCCC---------------eeeeeC---ceEEEEEe-cCCChhhhhhhHHHHHHHHhcC--CcEEEEEECC
Q 031271           57 CINEMVLNINDGG---------------NVVFWV---LKVVIYYT-AAWCGPCKFIEPYVKDFAAMYT--DVQFIKIDVD  115 (162)
Q Consensus        57 ~~~~~~~~~~~~~---------------~~~~~~---k~vvv~F~-a~wC~~C~~~~~~l~~~~~~~~--~v~f~~vd~d  115 (162)
                      ..|+|.+.+.+|.               .+..++   |++||+|| +.||+.|....+.+.+..++|.  ++.++.|..+
T Consensus         8 ~aPdF~l~~~~g~~~~~~~~~~~~~~~~~~~l~d~~GK~vvl~f~p~~~~p~C~~~~~~~~~~~~~~~~~g~~vv~is~d   87 (169)
T d2bmxa1           8 QFPAYQLTALIGGDLSKVDAKQPGDYFTTITSDEHPGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRDAQILGVSID   87 (169)
T ss_dssp             BCCCCEEEEECSSCGGGSCCSSGGGGEEEEETTSSTTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTTTEEEEEEESS
T ss_pred             CCCCCEEeeccCCcccccccccccccccEeeHHHHCCCeEEEEEecCCCCccccccccccccccccccccCcceeecccc
Confidence            4567777776663               333333   78899998 9999999999999999988885  4888888775


Q ss_pred             -------------------------CcHHHHHhcCCC----CCccEEEEE-cCCeEEEEEcC-----CCHHHHHHHHHHH
Q 031271          116 -------------------------WLPEAAKAFDLI----DVLPTFVLV-KRGKEIDRVVG-----AKKDELQMKTEKR  160 (162)
Q Consensus       116 -------------------------~~~~l~~~~~i~----~~~Ptiv~~-~~Gk~i~~~~g-----~~~~~l~~~l~~~  160 (162)
                                               .+..+++.||+.    ...|+.+++ ++|++...+.+     .+.+++.+.|+.+
T Consensus        88 ~~~~~~~~~~~~~~~~~~~f~ll~D~~~~v~~~ygv~~~~~~~~r~~fvID~~G~I~~~~~~~~~~~~~~~evl~~l~al  167 (169)
T d2bmxa1          88 SEFAHFQWRAQHNDLKTLPFPMLSDIKRELSQAAGVLNADGVADRVTFIVDPNNEIQFVSATAGSVGRNVDEVLRVLDAL  167 (169)
T ss_dssp             CHHHHHHHHHHCTTGGGCCSCEEECTTSHHHHHHTCBCTTSSBCEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHH
T ss_pred             chhhhhhhcccccccccceEEEEeccHHHHHHHcCCCccCCccceeEEEEcCCCEEEEEEEcCCCCCCCHHHHHHHHHHh
Confidence                                     234678888861    355666666 79998765542     2567888888765

>d1xvqa_ c.47.1.10 (A:) Thiol peroxidase Tpx {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.92  E-value=1.5e-08  Score=71.36  Aligned_cols=106  Identities=9%  Similarity=-0.007  Sum_probs=75.4

Q ss_pred             eeeeccccceeEEecCCCeeeeeC---ceEEEEEe-cCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCc----------
Q 031271           52 FCLIYCINEMVLNINDGGNVVFWV---LKVVIYYT-AAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWL----------  117 (162)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~---k~vvv~F~-a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~----------  117 (162)
                      .......|+|++.+.+|+.+..++   |++||+|| +.||+.|....+.|.+..+++ ++.++.|..|..          
T Consensus        17 p~iG~~aP~F~L~~~~g~~v~L~d~~Gk~vvl~f~~~~~~p~C~~e~~~l~~~~~~~-g~~vv~Is~d~~~~~~~~~~~~   95 (166)
T d1xvqa_          17 PAVGSPAPAFTLTGGDLGVISSDQFRGKSVLLNIFPSVDTPVCATSVRTFDERAAAS-GATVLCVSKDLPFAQKRFCGAE   95 (166)
T ss_dssp             CCTTSBCCCCEEECTTSCEEEGGGGTTSCEEEEECSCCCSSCCCHHHHHHHHHHHHT-TCEEEEEESSCHHHHTTCC---
T ss_pred             CCCcCCCCCeEEECCCCCEEehHHhCCcEEEEEeeecccccccHHHHHHHhhhcccc-cccccccccchHHHHHHHHHHh
Confidence            344556788999999999998776   89999999 558888999988887776654 677888877532          


Q ss_pred             ------------HHHHHhcCCCC---------CccEEEEE-cCCeEEEEEcCC------CHHHHHHHHHH
Q 031271          118 ------------PEAAKAFDLID---------VLPTFVLV-KRGKEIDRVVGA------KKDELQMKTEK  159 (162)
Q Consensus       118 ------------~~l~~~~~i~~---------~~Ptiv~~-~~Gk~i~~~~g~------~~~~l~~~l~~  159 (162)
                                  ..+.+.|++ .         ..|+++++ ++|+++......      +.+++.+.|+.
T Consensus        96 ~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~g~~~ra~fvID~~G~I~y~~~~~~~~~~~~~d~il~aL~a  164 (166)
T d1xvqa_          96 GTENVMPASAFRDSFGEDYGV-TIADGPMAGLLARAIVVIGADGNVAYTELVPEIAQEPNYEAALAALGA  164 (166)
T ss_dssp             ---CEEEEECTTSSHHHHTTC-BBCSSTTTTSBCSEEEEECTTSBEEEEEECSBTTCCCCHHHHHHHHHH
T ss_pred             CCcccccccchhHHHHHHhCe-eeccCcccCceeeEEEEEeCCCEEEEEEEcCCCCCCCCHHHHHHHHHh
Confidence                        245666765 2         13454444 899998665321      46677776654

>d1zyea1 c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin-3 (AOP-1, SP-22)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.90  E-value=4.4e-09  Score=73.73  Aligned_cols=101  Identities=11%  Similarity=0.101  Sum_probs=73.4

Q ss_pred             ccceeEE---ecCCCeeeeeC---ceEEEEEe-cCCChhhhhhhHHHHHHHHhcC--CcEEEEEECCC------------
Q 031271           58 INEMVLN---INDGGNVVFWV---LKVVIYYT-AAWCGPCKFIEPYVKDFAAMYT--DVQFIKIDVDW------------  116 (162)
Q Consensus        58 ~~~~~~~---~~~~~~~~~~~---k~vvv~F~-a~wC~~C~~~~~~l~~~~~~~~--~v~f~~vd~d~------------  116 (162)
                      -|+|++.   +.+++.++.++   |+|||+|| +.||+.|....+.+.+...++.  ++.++.|..|.            
T Consensus         3 AP~F~l~~~~~~~~~~vsL~d~~Gk~vVL~Fyp~~~tp~C~~e~~~~~~~~~~~~~~~~~vigIS~d~~~~~~~~~~~~~   82 (158)
T d1zyea1           3 APYFKGTAVVSGEFKEISLDDFKGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNCEVVAVSVDSHFSHLAWINTPR   82 (158)
T ss_dssp             CCCCEEEEECSSSEEEEEGGGGTTSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHTSCG
T ss_pred             CCCCccceeeCCCccEEeHHHhCCCeEEEEEeehhcCCccccchhhHHHhHHHhhcCCceEEeccCcCHHHHHHHHhhhH
Confidence            4777765   33555676765   88999999 8999999999999999888774  58888887752            


Q ss_pred             ----------------cHHHHHhcCCCCC------cc-EEEEEcCCeEEEEEcC-----CCHHHHHHHHHH
Q 031271          117 ----------------LPEAAKAFDLIDV------LP-TFVLVKRGKEIDRVVG-----AKKDELQMKTEK  159 (162)
Q Consensus       117 ----------------~~~l~~~~~i~~~------~P-tiv~~~~Gk~i~~~~g-----~~~~~l~~~l~~  159 (162)
                                      ...+++.||+ ..      .| |+++-++|++.....+     .+.+++.+.|+.
T Consensus        83 ~~~~~~~~~f~llsD~~~~~~~~ygv-~~~~~g~~~R~tfvID~~G~I~~~~i~~~~~~~~~~EiL~~lka  152 (158)
T d1zyea1          83 KNGGLGHMNIALLSDLTKQISRDYGV-LLEGPGLALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKA  152 (158)
T ss_dssp             GGTCCCSCSSEEEECTTSHHHHHTTC-EETTTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHH
T ss_pred             hhccccccccccccccccHHHHHHHh-ccccCCccccEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHH
Confidence                            2357788887 42      33 4555589998765532     257888888873

>d1zofa1 c.47.1.10 (A:1-170) Thioredoxin reductase TsaA {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin reductase TsaA
species: Helicobacter pylori [TaxId: 210]

Probab=98.87  E-value=5e-09  Score=74.31  Aligned_cols=103  Identities=13%  Similarity=0.139  Sum_probs=74.2

Q ss_pred             cccceeEEecCCC-----eeeeeC----ceEEEEEe-cCCChhhhhhhHHHHHHHHhcC--CcEEEEEECCC--------
Q 031271           57 CINEMVLNINDGG-----NVVFWV----LKVVIYYT-AAWCGPCKFIEPYVKDFAAMYT--DVQFIKIDVDW--------  116 (162)
Q Consensus        57 ~~~~~~~~~~~~~-----~~~~~~----k~vvv~F~-a~wC~~C~~~~~~l~~~~~~~~--~v~f~~vd~d~--------  116 (162)
                      .-|+|++...+|.     .+..++    ++|||+|| +.||+.|....+.+.+...++.  ++.++.|..|.        
T Consensus         6 ~APdF~l~~~~g~~~~~~~~~Lsd~~gk~~vvl~FyP~~~tp~C~~e~~~~~~~~~~f~~~g~~Vvgis~d~~~~~~~~~   85 (170)
T d1zofa1           6 LAPDFKAPAVLGNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSIDSEQVHFAWK   85 (170)
T ss_dssp             BCCCCEEEEECTTSCEEEEEETTTSCCSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHH
T ss_pred             cCCCcCcccccCCCccceEEEeHHHcCCCEEEEEEEccccCCcCHHHHHHHHHhHHhhccCCeeEecccccchhhHHHHH
Confidence            4578999988874     455554    57999999 9999999999999988888774  58888888763        


Q ss_pred             --------------------cHHHHHhcCCCC-----CccE-EEEEcCCeEEEEEcC-----CCHHHHHHHHHHH
Q 031271          117 --------------------LPEAAKAFDLID-----VLPT-FVLVKRGKEIDRVVG-----AKKDELQMKTEKR  160 (162)
Q Consensus       117 --------------------~~~l~~~~~i~~-----~~Pt-iv~~~~Gk~i~~~~g-----~~~~~l~~~l~~~  160 (162)
                                          ..++.+.||+ .     ..|+ +++-++|++.....+     .+.+++.+.|+.+
T Consensus        86 ~~~~~~~~~~~~~~~~l~D~~~~v~~~ygv-~~~~~~~~r~tfvID~~G~I~~~~~~~~~~~~~~~eiL~~l~aL  159 (170)
T d1zofa1          86 NTPVEKGGIGQVSFPMVADITKSISRDYDV-LFEEAIALRGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDAL  159 (170)
T ss_dssp             TSCGGGTCCCCCSSCEEECTTSHHHHHTTC-EETTTEECEEEEEEETTTEEEEEEEESSSCCCHHHHHHHHHHHH
T ss_pred             hhhhhcccccCcccccccccccHHHHHcCC-CccccceeEEEEEEcCCCeEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence                                2357788887 4     3454 555589998765532     2466676666543

>d1q98a_ c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Haemophilus influenzae [TaxId: 727]

Probab=98.82  E-value=2.2e-08  Score=70.43  Aligned_cols=94  Identities=14%  Similarity=0.112  Sum_probs=71.9

Q ss_pred             eeeccccceeEEecCCCeeeeeC---ceEEEEEe-cCCChhhhhhhHHHHHHHHhcCCcEEEEEECCC------------
Q 031271           53 CLIYCINEMVLNINDGGNVVFWV---LKVVIYYT-AAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDW------------  116 (162)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~---k~vvv~F~-a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~------------  116 (162)
                      ......|+|++.+.+|+.+..++   |++||+|| +.||+.|....+.|++...++.++.++.|..|.            
T Consensus        17 ~vG~~APdF~L~d~~g~~v~Lsd~~Gk~vVL~f~p~~~tp~C~~e~~~~~~~~~~~~~~~vi~iS~d~~~~~~~~~~~~~   96 (164)
T d1q98a_          17 QVGEIVENFILVGNDLADVALNDFASKRKVLNIFPSIDTGVCATSVRKFNQQAAKLSNTIVLCISADLPFAQARFCGAEG   96 (164)
T ss_dssp             CTTCBCCCCEEECTTSCEEEGGGGTTSEEEEEECSCSCSSCCCHHHHHHHHHHHHSTTEEEEEEESSCHHHHTTCTTTTT
T ss_pred             CCCCCCCCcEEECCCCCEEeehhhCCcEEEEEecCccccCcccHHHHHHHHHHHHhccceEEeecCCcHHHHHHHHHHhC
Confidence            44456788999999999998765   89999999 558888999999999999999888888887752            


Q ss_pred             -----------cHHHHHhcCCCC-------Cc--cEEEEE-cCCeEEEEEcC
Q 031271          117 -----------LPEAAKAFDLID-------VL--PTFVLV-KRGKEIDRVVG  147 (162)
Q Consensus       117 -----------~~~l~~~~~i~~-------~~--Ptiv~~-~~Gk~i~~~~g  147 (162)
                                 ...+...|++ .       ++  |+++++ ++|++......
T Consensus        97 ~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~g~~~Ra~fvID~~G~I~y~~~~  147 (164)
T d1q98a_          97 IENAKTVSTFRNHALHSQLGV-DIQTGPLAGLTSRAVIVLDEQNNVLHSQLV  147 (164)
T ss_dssp             CTTEEEEECTTCTHHHHHTTC-EECSSTTTTSBCCEEEEECTTSBEEEEEEC
T ss_pred             CccccccccccchhHHHhhce-ecccCccccCcccEEEEECCCCEEEEEEEC
Confidence                       2356777775 2       22  555555 89999876543

>d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.75  E-value=9.1e-09  Score=71.80  Aligned_cols=81  Identities=16%  Similarity=0.289  Sum_probs=60.8

Q ss_pred             ceEEEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEEC-----------------------------------------
Q 031271           76 LKVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDV-----------------------------------------  114 (162)
Q Consensus        76 k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~-----------------------------------------  114 (162)
                      |.||+.|+-+.||+|+++.|.++++.+....+.+...-+                                         
T Consensus        27 k~tIv~FsD~~CpyC~~~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (156)
T d1eeja1          27 KHVITVFTDITCGYCHKLHEQMADYNALGITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMAGKSVAPASCDVD  106 (156)
T ss_dssp             CEEEEEEECTTCHHHHHHHTTHHHHHHTTEEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHHTTCCCCCCCCSCC
T ss_pred             CEEEEEEeCCCCHHHHHHHHHHHHhhccCceEEEEeccccccchhhHHHHHHHHHhhhhhhhhHHHHhccccchhhhcch
Confidence            556899999999999999999999876432333332211                                         


Q ss_pred             -CCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHHHHHHHh
Q 031271          115 -DWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQMKTEKRR  161 (162)
Q Consensus       115 -d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~~l~~~~  161 (162)
                       ..+..+++.+|| +++||++ +.||+.+   .|. +.+.|+++|++.+
T Consensus       107 i~~~~~la~~lgv-~GTPt~~-~~nG~~v---~G~~~~e~l~~~i~~~~  150 (156)
T d1eeja1         107 IADHYALGVQLGV-SGTPAVV-LSNGTLV---PGYQPPKEMKEFLDEHQ  150 (156)
T ss_dssp             HHHHHHHHHHHTC-CSSSEEE-CTTSCEE---ESCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCC-cCCCEEE-EeCCeEe---cCCCCHHHHHHHHHHHH
Confidence             123468899999 9999965 4788765   587 8999999999864

>d1uula_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.74  E-value=1.9e-08  Score=72.81  Aligned_cols=101  Identities=11%  Similarity=0.062  Sum_probs=74.7

Q ss_pred             ccceeE----EecCCCeeeeeC---ceEEEEEe-cCCChhhhhhhHHHHHHHHhcC--CcEEEEEECCC-----------
Q 031271           58 INEMVL----NINDGGNVVFWV---LKVVIYYT-AAWCGPCKFIEPYVKDFAAMYT--DVQFIKIDVDW-----------  116 (162)
Q Consensus        58 ~~~~~~----~~~~~~~~~~~~---k~vvv~F~-a~wC~~C~~~~~~l~~~~~~~~--~v~f~~vd~d~-----------  116 (162)
                      -|+|++    .+.+|+.+..++   |+|||+|| ++||+.|....+.|.++.+++.  ++.++.|..|.           
T Consensus         9 APdFtl~a~l~d~~g~~vsLsd~~GK~vVL~FyP~~~t~~C~~E~~~f~~~~~~f~~~g~~VlgIS~Ds~~s~~~~~~~~   88 (194)
T d1uula_           9 APDFNETALMPNGTFKKVALTSYKGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIGCEVLACSMDSEYSHLAWTSIE   88 (194)
T ss_dssp             CCCCEEEEECTTSCEEEEEGGGGTTSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHSC
T ss_pred             CCCCcccccccCCCCcEEehHHhCCCeEEEEEEeCCccccchhhhhHHHhhhhhhccCceEEEEEecCchhhhhhhhhhh
Confidence            466773    355666776665   88999999 9999999999999999988885  58888888762           


Q ss_pred             -----------------cHHHHHhcCCCC----C--cc-EEEEEcCCeEEEEEc-----CCCHHHHHHHHHH
Q 031271          117 -----------------LPEAAKAFDLID----V--LP-TFVLVKRGKEIDRVV-----GAKKDELQMKTEK  159 (162)
Q Consensus       117 -----------------~~~l~~~~~i~~----~--~P-tiv~~~~Gk~i~~~~-----g~~~~~l~~~l~~  159 (162)
                                       ..++++.||+ .    +  .| ||++-++|++.....     |.+.+++.+.|+.
T Consensus        89 ~~~~~~~~l~fpllsD~~~~v~~~ygv-~~~~~~~~~R~tfvID~~G~I~~~~~~~~~~~r~~~E~Lr~l~a  159 (194)
T d1uula_          89 RKRGGLGQMNIPILADKTKCIMKSYGV-LKEEDGVAYRGLFIIDPKQNLRQITVNDLPVGRDVDEALRLVKA  159 (194)
T ss_dssp             GGGTCCCSCSSCEEECTTCHHHHHHTC-EETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHH
T ss_pred             hhhccccCCCcceeeCCcchHHHHcCC-eeccCCceEEEEEEECCCCeEEEEEEecCCCCcCHHHHHHHHHH
Confidence                             2368888887 3    2  34 455558998877653     3367888777765

>d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC, C-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=98.69  E-value=6.9e-09  Score=72.04  Aligned_cols=80  Identities=20%  Similarity=0.308  Sum_probs=61.6

Q ss_pred             ceEEEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECC----------------------------------------
Q 031271           76 LKVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVD----------------------------------------  115 (162)
Q Consensus        76 k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d----------------------------------------  115 (162)
                      |.+|+.|+-+.||+|+++.+.++++.+....+.++.....                                        
T Consensus        27 k~~I~~FsD~~CPyC~~~~~~l~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~~~~~~~~~~~~~~~~  106 (150)
T d1t3ba1          27 KHVVTVFMDITCHYCHLLHQQLKEYNDLGITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGNLPKEVKTPNI  106 (150)
T ss_dssp             SEEEEEEECTTCHHHHHHHTTHHHHHHTTEEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTCCCSSCCCSSH
T ss_pred             CEEEEEEECCCCHHHHHHhHHHHHHhccCceEEEEEecccccchhHHHHHHHHHHhhhHHHhhHhHhhhccccchhhhhH
Confidence            4558999999999999999999999876544444433221                                        


Q ss_pred             --CcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHHHHHHH
Q 031271          116 --WLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQMKTEKR  160 (162)
Q Consensus       116 --~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~~l~~~  160 (162)
                        .+..+++.+|| .++||+++ .||+.+   .|. .+++|+++|++.
T Consensus       107 i~~~~~la~~lGv-~GTPt~~~-~nG~~i---~G~~~~~~l~~~l~~~  149 (150)
T d1t3ba1         107 VKKHYELGIQFGV-RGTPSIVT-STGELI---GGYLKPADLLRALEET  149 (150)
T ss_dssp             HHHHHHHHHHHTC-CSSCEEEC-TTSCCC---CSCCCHHHHHHHHHHC
T ss_pred             HHHHHHHHHhcCc-CCCCEEEE-cCCcEe---cCCCCHHHHHHHHHhh
Confidence              23468899999 99998775 678754   688 899999999863

>d2zcta1 c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin
species: Aeropyrum pernix [TaxId: 56636]

Probab=98.67  E-value=1.2e-07  Score=70.60  Aligned_cols=105  Identities=17%  Similarity=0.131  Sum_probs=77.2

Q ss_pred             ccccceeEEecCCCeeee-----eCceEEEEEe-cCCChhhhhhhHHHHHHHHhcC--CcEEEEEECCC-----------
Q 031271           56 YCINEMVLNINDGGNVVF-----WVLKVVIYYT-AAWCGPCKFIEPYVKDFAAMYT--DVQFIKIDVDW-----------  116 (162)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~-----~~k~vvv~F~-a~wC~~C~~~~~~l~~~~~~~~--~v~f~~vd~d~-----------  116 (162)
                      ...|+|++.+.+|.....     .+|.+||+|| ++||+.|....+.+.+...+|.  ++.++.|.+|.           
T Consensus         5 d~aPdF~l~t~~G~i~~~d~~~~kGk~vVLff~P~dftpvCttEl~~~~~~~~ef~~~g~~vigiS~Ds~~sh~~w~~~~   84 (237)
T d2zcta1           5 ERFPEMEVTTDHGVIKLPDHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHIKWKEWI   84 (237)
T ss_dssp             SBCCCEEEEETTEEEEETHHHHTTTCEEEEEEESCSSCHHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHHHH
T ss_pred             CCCCCeEEEcCCCCEEechHhhcCCCEEEEEEECCCCCccCHHHHHHHHhhhhhhccCCcceeeccCCcHHHHHHHhhhh
Confidence            356889999998863222     3478889898 9999999999999988888774  58888888763           


Q ss_pred             ----------------cHHHHHhcCCC------CCccEEEEE-cCCeEEEEEc-----CCCHHHHHHHHHHH
Q 031271          117 ----------------LPEAAKAFDLI------DVLPTFVLV-KRGKEIDRVV-----GAKKDELQMKTEKR  160 (162)
Q Consensus       117 ----------------~~~l~~~~~i~------~~~Ptiv~~-~~Gk~i~~~~-----g~~~~~l~~~l~~~  160 (162)
                                      ..++++.||+.      ...|+++++ ++|++...+.     |.+.+++++.|+.+
T Consensus        85 ~~~~~~~l~fpllsD~~~~vak~yGv~~~~~~~~~~RatFIIDpdG~Ir~~~~~~~~~gR~~dEiLr~l~aL  156 (237)
T d2zcta1          85 ERHIGVRIPFPIIADPQGTVARRLGLLHAESATHTVRGVFIVDARGVIRTMLYYPMELGRLVDEILRIVKAL  156 (237)
T ss_dssp             HHHHCCCCCSCEEECGGGHHHHHTTCC----CCTTCCEEEEECTTSBEEEEEECCTTBCCCHHHHHHHHHHH
T ss_pred             hhhcccccccccccCcchHHHHHcCCccccccccceeeeEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHH
Confidence                            33688888861      246766655 8998766553     33678888887653

>d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Corynebacterium ammoniagenes [TaxId: 1697]

Probab=98.64  E-value=1.4e-07  Score=57.43  Aligned_cols=68  Identities=16%  Similarity=0.301  Sum_probs=53.7

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHHH---HHhcCCCCCccEEEEEcCCeEEEEEcCCCHHHHHH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEA---AKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQM  155 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~l---~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~~~~~l~~  155 (162)
                      ++.|+.+||++|.++...|++.     ++.|..++++.+++.   .+.+|. ..+|++++  +|+.+   .|++++.|.+
T Consensus         3 v~iYt~~~C~~C~~ak~~L~~~-----~i~~~~~~i~~~~~~~~~~~~~g~-~tvP~i~i--~g~~i---gGf~~d~l~~   71 (74)
T d1r7ha_           3 ITLYTKPACVQCTATKKALDRA-----GLAYNTVDISLDDEARDYVMALGY-VQAPVVEV--DGEHW---SGFRPERIKQ   71 (74)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT-----TCCCEEEETTTCHHHHHHHHHTTC-BCCCEEEE--TTEEE---ESCCHHHHHH
T ss_pred             EEEEeCCCChhHHHHHHHHHHc-----CCceEEEEccCCHHHHHHHHHhCC-CCcCEEEE--CCEEE---eCCCHhHHHH
Confidence            5779999999999999888763     788888899887654   466789 99998754  88654   5888888876


Q ss_pred             HH
Q 031271          156 KT  157 (162)
Q Consensus       156 ~l  157 (162)
                      ++
T Consensus        72 L~   73 (74)
T d1r7ha_          72 LQ   73 (74)
T ss_dssp             HH
T ss_pred             hh
Confidence            53

>d1beda_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Vibrio cholerae [TaxId: 666]

Probab=98.60  E-value=9.1e-08  Score=67.03  Aligned_cols=84  Identities=17%  Similarity=0.227  Sum_probs=65.0

Q ss_pred             CceEEEEEecCCChhhhhhhHHHHHHHHhcCC-cEEEEEECC--------------------------------------
Q 031271           75 VLKVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVD--------------------------------------  115 (162)
Q Consensus        75 ~k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~-v~f~~vd~d--------------------------------------  115 (162)
                      .+++|+.|....||+|+.+.+.+.++.+++++ +.+....+.                                      
T Consensus        18 ~~~~Ivef~d~~Cp~C~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (181)
T d1beda_          18 SSPVVSEFFSFYCPHCNTFEPIIAQLKQQLPEGAKFQKNHVSFMGGNMGQAMSKAYATMIALEVEDKMVPVMFNRIHTLR   97 (181)
T ss_dssp             SSCEEEEEECTTCHHHHHHHHHHHHHHHTSCTTCEEEEEECSSSSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSC
T ss_pred             CCCEEEEEECCCCccchhhhhhhhhHhhhcccccceeEEeccccccccHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhc
Confidence            46679999999999999999999999999875 555544331                                      


Q ss_pred             -------------------------------------CcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHHHH
Q 031271          116 -------------------------------------WLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQMKT  157 (162)
Q Consensus       116 -------------------------------------~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~~l  157 (162)
                                                           +....++++|| .++||+++  ||+.+....+. +.+.|.+.|
T Consensus        98 ~~~~~~~~l~~~~~~~gvd~~~~~~~~~~~~~~~~v~~~~~~~~~~gi-~gTPt~~I--nGk~~v~~~~~~~~~~l~~~i  174 (181)
T d1beda_          98 KPPKDEQELRQIFLDEGIDAAKFDAAYNGFAVDSMVRRFDKQFQDSGL-TGVPAVVV--NNRYLVQGQSVKSLDEYFDLV  174 (181)
T ss_dssp             CCCCSHHHHHHHHHTTTCCHHHHHHHHTSHHHHHHHHHHHHHHHHHTC-CSSSEEEE--TTTEEECGGGCCSHHHHHHHH
T ss_pred             cccchHHHHHHHHHHhcCCHHHHHHHHhChHHHHHHHHHHHHHHHhCC-ccccEEEE--CCEEeeCCCCCCCHHHHHHHH
Confidence                                                 01236778999 99999987  99876655666 788888888


Q ss_pred             HHHh
Q 031271          158 EKRR  161 (162)
Q Consensus       158 ~~~~  161 (162)
                      +.++
T Consensus       175 ~~L~  178 (181)
T d1beda_         175 NYLL  178 (181)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7654

>d2b7ka1 c.47.1.10 (A:111-279) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.58  E-value=2.2e-07  Score=63.61  Aligned_cols=43  Identities=12%  Similarity=-0.032  Sum_probs=33.1

Q ss_pred             cceeEEecCCCeeeeeC---ceEEEEEecCCChhh-hhhhHHHHHHH
Q 031271           59 NEMVLNINDGGNVVFWV---LKVVIYYTAAWCGPC-KFIEPYVKDFA  101 (162)
Q Consensus        59 ~~~~~~~~~~~~~~~~~---k~vvv~F~a~wC~~C-~~~~~~l~~~~  101 (162)
                      ++|++.+.+|+.+..++   |++||.||.+||+.| ..+...+..+.
T Consensus         7 ~dF~l~d~~G~~vsl~~~~GK~vli~f~~t~c~~~c~~~~~~~~~~~   53 (169)
T d2b7ka1           7 GPFHLEDMYGNEFTEKNLLGKFSIIYFGFSNCPDICPDELDKLGLWL   53 (169)
T ss_dssp             CCCEEEETTSCEEEGGGGTTSCEEEEEECTTCCSHHHHHHHHHHHHH
T ss_pred             CCeEEEeCCCCEECHHHHCCCEEEEEEeccccCCcccchhhhhhhhh
Confidence            46999999999998876   999999999999754 44444444443

>d1v58a1 c.47.1.9 (A:62-230) Thiol:disulfide interchange protein DsbG, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Thiol:disulfide interchange protein DsbG, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.55  E-value=2.3e-07  Score=65.25  Aligned_cols=79  Identities=15%  Similarity=0.254  Sum_probs=60.0

Q ss_pred             ceEEEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECC----------------------------------------
Q 031271           76 LKVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVD----------------------------------------  115 (162)
Q Consensus        76 k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d----------------------------------------  115 (162)
                      +.+|+.|+-+.||+|+++.+.++++.+.+ .+.+..++..                                        
T Consensus        37 ~~tv~vF~D~~CP~C~~~~~~l~~l~~~~-~v~v~~~~~~~~~~~s~~~a~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~  115 (169)
T d1v58a1          37 PVIVYVFADPFCPYCKQFWQQARPWVDSG-KVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYEASGGKLKLNVPAN  115 (169)
T ss_dssp             SEEEEEEECTTCHHHHHHHHHHHHHHHTT-SEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHHHTTTCCCCCCCSS
T ss_pred             CEEEEEEECCCCcchHHHHHHHHHHHhcc-ceeEEEEecccCCcchHHHHHHHHhhhCHHHHHHHHHHhhhcccccccch
Confidence            45589999999999999999999988754 4555555541                                        


Q ss_pred             ----------CcHHHHHhcCCCCCccEEEEEc-CCeEEEEEcCC-CHHHHHHHH
Q 031271          116 ----------WLPEAAKAFDLIDVLPTFVLVK-RGKEIDRVVGA-KKDELQMKT  157 (162)
Q Consensus       116 ----------~~~~l~~~~~i~~~~Ptiv~~~-~Gk~i~~~~g~-~~~~l~~~l  157 (162)
                                .+..+++++|+ .++|++++.. +| ....+.|. +.+.|++.|
T Consensus       116 ~~~~~~~~i~~n~~~a~~~gi-~gTPt~i~~~~~g-~~~~~~G~~~~~~l~~il  167 (169)
T d1v58a1         116 VSTEQMKVLSDNEKLMDDLGA-NVTPAIYYMSKEN-TLQQAVGLPDQKTLNIIM  167 (169)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTC-CSSCEEEEEETTT-EEEEEESSCCHHHHHHHT
T ss_pred             hhHHHHHHHHHHHHHHHhcCC-CCCCEEEEECCCC-CEEEecCCCCHHHHHHHh
Confidence                      12357889999 9999988864 55 45678898 788877664

>d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Escherichia coli [TaxId: 562]

Probab=98.54  E-value=1.8e-07  Score=57.40  Aligned_cols=66  Identities=26%  Similarity=0.398  Sum_probs=52.4

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHHHH---HhcCCCCCccEEEEEcCCeEEEEEcCCCHHHHHH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAA---KAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQM  155 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~l~---~~~~i~~~~Ptiv~~~~Gk~i~~~~g~~~~~l~~  155 (162)
                      ++.|+.+||++|.++...|++.     ++.|..+|++.+++..   +..|. ..+|++++  +|+.   +.|++++.|.+
T Consensus         3 i~iYs~~~C~~C~~ak~~L~~~-----~i~y~~~~i~~~~~~~~~~~~~g~-~tvP~i~i--~~~~---i~Gf~~d~i~~   71 (76)
T d1h75a_           3 ITIYTRNDCVQCHATKRAMENR-----GFDFEMINVDRVPEAAEALRAQGF-RQLPVVIA--GDLS---WSGFRPDMINR   71 (76)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT-----TCCCEEEETTTCHHHHHHHHHTTC-CSSCEEEE--TTEE---EESCCHHHHGG
T ss_pred             EEEEeCCCCccHHHHHHHHHhc-----CceeEEEeecCCHHHHHHHHhcCC-CCCCEEEE--CCEE---EECCCHHHHHH
Confidence            5678999999999999888763     7888999999887654   45688 99999876  7754   45888888754

>d2h01a1 c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Plasmodium yoelii [TaxId: 5861]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Plasmodium yoelii [TaxId: 5861]

Probab=98.52  E-value=1.3e-07  Score=66.87  Aligned_cols=101  Identities=17%  Similarity=0.189  Sum_probs=71.9

Q ss_pred             cceeEEe----cCCCeeeeeC----ceEEEEEe-cCCChhhhhhhHHHHHHHHhcC--CcEEEEEECCC-----------
Q 031271           59 NEMVLNI----NDGGNVVFWV----LKVVIYYT-AAWCGPCKFIEPYVKDFAAMYT--DVQFIKIDVDW-----------  116 (162)
Q Consensus        59 ~~~~~~~----~~~~~~~~~~----k~vvv~F~-a~wC~~C~~~~~~l~~~~~~~~--~v~f~~vd~d~-----------  116 (162)
                      |+|.+..    .+++.++.++    ++|||+|| +.||+.|......|.+..++|.  ++.++.|+.|.           
T Consensus         3 PdF~l~~~~gd~~~~~vsL~d~~g~k~vVl~FyP~~~tp~Ct~e~~~f~~~~~~f~~~g~~vigIS~D~~~~~~~~~~~~   82 (170)
T d2h01a1           3 PSFKAEAVFGDNTFGEVSLSDFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKERNVELLGCSVDSKFTHLAWKKTP   82 (170)
T ss_dssp             CCCEEEEECTTSCEEEEEGGGGTTTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHTSC
T ss_pred             CCeEeeeecCCCCccEEehHHHCCCCeEEEEEECCCCCCccchhhHHHhhhhhhhhcCCeeEecccCCcHHHHHhHhhhh
Confidence            6777773    3444566664    77899999 8999999999999988888774  58899998762           


Q ss_pred             -----------------cHHHHHhcCCCCC-----ccE-EEEEcCCeEEEEEcCC-----CHHHHHHHHHHH
Q 031271          117 -----------------LPEAAKAFDLIDV-----LPT-FVLVKRGKEIDRVVGA-----KKDELQMKTEKR  160 (162)
Q Consensus       117 -----------------~~~l~~~~~i~~~-----~Pt-iv~~~~Gk~i~~~~g~-----~~~~l~~~l~~~  160 (162)
                                       ...+++.||+ ..     .++ +++-++|++...+.+.     +.+++.+.|+.+
T Consensus        83 ~~~~~~~~~~f~llsD~~~~~~~~ygv-~~~~~~~~R~tfiId~~G~I~~~~~~~~~~~~~~~eil~~l~~l  153 (170)
T d2h01a1          83 LSQGGIGNIKHTLISDISKSIARSYDV-LFNESVALRAFVLIDKQGVVQHLLVNNLALGRSVDEILRLIDAL  153 (170)
T ss_dssp             GGGTCCCSCSSEEEECTTSHHHHHTTC-EETTTEECCEEEEECTTSBEEEEEEGGGSSGGGHHHHHHHHHHH
T ss_pred             hhhccccccCCceeEcCccHHHHHhCC-ccccccceeeeEEEcCCCeEEEEEEecCCCCCCHHHHHHHHHHh
Confidence                             2367888887 32     244 5555889887766432     456777777653

>d1prxa_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=1.1e-06  Score=64.39  Aligned_cols=103  Identities=14%  Similarity=0.113  Sum_probs=75.3

Q ss_pred             ccccceeEEecCCCeeeeeC----ceEEEEEe-cCCChhhhhhhHHHHHHHHhcC--CcEEEEEECCC------------
Q 031271           56 YCINEMVLNINDGGNVVFWV----LKVVIYYT-AAWCGPCKFIEPYVKDFAAMYT--DVQFIKIDVDW------------  116 (162)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~----k~vvv~F~-a~wC~~C~~~~~~l~~~~~~~~--~v~f~~vd~d~------------  116 (162)
                      ...|+|++.+.+|+ +..++    |++||+|| +.||+.|......+.+...++.  ++.++.|.+|.            
T Consensus         5 d~APdF~l~~~~G~-v~Lsd~~g~k~vVLfFyP~dftpvC~~El~~~~~~~~~f~~~g~~v~giS~Ds~~sh~~~~~~~~   83 (220)
T d1prxa_           5 DVAPNFEANTTVGR-IRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRNVKLIALSIDSVEDHLAWSKDIN   83 (220)
T ss_dssp             CBCCCCEEEETTEE-EEHHHHHTTSEEEEEEESCSSCHHHHHHHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHH
T ss_pred             CCCCCcEeecCCCC-EEeHHHcCCCeEEEEEECCCCCCcchhhHHHHHHHHHHhhcccceeeccccccccchhhhhhhhh
Confidence            34688999999886 54433    78899999 7899999999999998888875  48888887752            


Q ss_pred             -------------------cHHHHHhcCCCC------------CccEEEEE-cCCeEEEEEc-----CCCHHHHHHHHHH
Q 031271          117 -------------------LPEAAKAFDLID------------VLPTFVLV-KRGKEIDRVV-----GAKKDELQMKTEK  159 (162)
Q Consensus       117 -------------------~~~l~~~~~i~~------------~~Ptiv~~-~~Gk~i~~~~-----g~~~~~l~~~l~~  159 (162)
                                         ..++++.||+ .            ..++++++ ++|++.....     |.+.+++...|+.
T Consensus        84 ~~~~~~~~~~l~fpllsD~~~~va~~ygv-~~~~~~~~~~~~~~~RatFIID~~g~Ir~~~~~~~~~gR~~dEiLr~l~a  162 (220)
T d1prxa_          84 AYNSEEPTEKLPFPIIDDRNRELAILLGM-LDPAEKDEKGMPVTARVVFVFGPDKKLKLSILYPATTGRNFDEILRVVIS  162 (220)
T ss_dssp             HHTTSCCCSCCSSCEEECTTCHHHHHTTS-SCSCTTCSSSCCTTCCEEEEECTTSBEEEEEECCTTBCCCHHHHHHHHHH
T ss_pred             hccccccccCcccccccCcccHHHHHhCC-ccccccccccceeeeEEEEEEcCccceeEEEEecCCcccchHHHHHHHHH
Confidence                               2368888887 3            23444444 8888766553     4467888777765


Q ss_pred             H
Q 031271          160 R  160 (162)
Q Consensus       160 ~  160 (162)
                      +
T Consensus       163 l  163 (220)
T d1prxa_         163 L  163 (220)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1ttza_ c.47.1.1 (A:) Hypothetical protein XCC2852 {Xanthomonas campestris [TaxId: 339]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein XCC2852
species: Xanthomonas campestris [TaxId: 339]

Probab=98.44  E-value=1.4e-06  Score=53.34  Aligned_cols=72  Identities=17%  Similarity=0.211  Sum_probs=56.0

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCCCHHHHHHHHH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQMKTE  158 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~~~~~l~~~l~  158 (162)
                      +..|+.++|+.|..+...+.+    ..++.+..+|+++++++.++|+.  .+|.++ +.+|....  .++++++|.++|.
T Consensus         2 ltLyt~~~C~LCe~A~~~l~~----~~~~~~~~vdI~~d~~l~~~y~~--~IPVl~-~~~~~~l~--w~fd~~~l~~~L~   72 (75)
T d1ttza_           2 LTLYQRDDCHLCDQAVEALAQ----ARAGAFFSVFIDDDAALESAYGL--RVPVLR-DPMGRELD--WPFDAPRLRAWLD   72 (75)
T ss_dssp             EEEEECSSCHHHHHHHHHHHH----TTCCCEEEEECTTCHHHHHHHTT--TCSEEE-CTTCCEEE--SCCCHHHHHHHHH
T ss_pred             EEEECCCCccHHHHHHHHHHh----ccCCcEEEEEccCCHHHHHHhCC--eeeEEE-ECCeeEEc--CccCHHHHHHHHh
Confidence            567899999999988665543    34688999999999999999998  589654 34454442  4579999999987


Q ss_pred             H
Q 031271          159 K  159 (162)
Q Consensus       159 ~  159 (162)
                      .
T Consensus        73 ~   73 (75)
T d1ttza_          73 A   73 (75)
T ss_dssp             T
T ss_pred             c
Confidence            4

>d1qmva_ c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=8e-07  Score=64.16  Aligned_cols=106  Identities=12%  Similarity=0.069  Sum_probs=75.9

Q ss_pred             eeccccceeEE---ecCCCeeeeeC---ceEEEEEe-cCCChhhhhhhHHHHHHHHhcC--CcEEEEEECCC--------
Q 031271           54 LIYCINEMVLN---INDGGNVVFWV---LKVVIYYT-AAWCGPCKFIEPYVKDFAAMYT--DVQFIKIDVDW--------  116 (162)
Q Consensus        54 ~~~~~~~~~~~---~~~~~~~~~~~---k~vvv~F~-a~wC~~C~~~~~~l~~~~~~~~--~v~f~~vd~d~--------  116 (162)
                      .....|+|.+.   +.+++.+..++   |++||+|| ..||+.|......|.+..++|.  ++.++.|..|.        
T Consensus         7 VG~~AP~F~l~~~~d~~~~~v~L~d~~Gk~~vL~FyP~~~tp~C~~e~~~~~~~~~~f~~~g~~vigIS~D~~~~~~~~~   86 (197)
T d1qmva_           7 IGKPAPDFKATAVVDGAFKEVKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSNRAEDFRKLGCEVLGVSVDSQFTHLAWI   86 (197)
T ss_dssp             TTSBCCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHH
T ss_pred             CCCcCCCCCCcceeCCCCcEEeHHHhCCCeEEEEEecccccccchhhhHHHHHHHHHhccCCcEEEEEecCCHHHHHhhh
Confidence            34456788774   44556676665   88999999 9999999999999999988886  58888888752        


Q ss_pred             --------------------cHHHHHhcCCCC------Ccc-EEEEEcCCeEEEEEc-----CCCHHHHHHHHHHH
Q 031271          117 --------------------LPEAAKAFDLID------VLP-TFVLVKRGKEIDRVV-----GAKKDELQMKTEKR  160 (162)
Q Consensus       117 --------------------~~~l~~~~~i~~------~~P-tiv~~~~Gk~i~~~~-----g~~~~~l~~~l~~~  160 (162)
                                          ..++++.||+ .      ..| ||++-++|++.....     |.+.+++...|+.+
T Consensus        87 ~~~~~~~~~~~~~fpll~D~~~~va~~ygv-~~~~~g~~~R~tfiID~~g~Ir~~~~~~~~~~r~~~E~lr~l~al  161 (197)
T d1qmva_          87 NTPRKEGGLGPLNIPLLADVTRRLSEDYGV-LKTDEGIAYRGLFIIDGKGVLRQITVNDLPVGRSVDEALRLVQAF  161 (197)
T ss_dssp             TSCGGGTCCCSCSSCEEECTTCHHHHHTTC-EETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             cchhhhcCcCCCccceEeccchHHHHHhCC-CcccCCeeeEEEEEECCCCcEEEEEecCCCcccCHHHHHHHHHhh
Confidence                                2368888887 4      234 455447888765432     33677777776643

>d1n8ja_ c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.40  E-value=6.9e-07  Score=63.94  Aligned_cols=102  Identities=17%  Similarity=0.061  Sum_probs=71.6

Q ss_pred             cccceeEEe-cCCC--eeeeeC---ceEEEEEe-cCCChhhhhhhHHHHHHHHhcC--CcEEEEEECCC-----------
Q 031271           57 CINEMVLNI-NDGG--NVVFWV---LKVVIYYT-AAWCGPCKFIEPYVKDFAAMYT--DVQFIKIDVDW-----------  116 (162)
Q Consensus        57 ~~~~~~~~~-~~~~--~~~~~~---k~vvv~F~-a~wC~~C~~~~~~l~~~~~~~~--~v~f~~vd~d~-----------  116 (162)
                      ..|+|.+.. .+|+  .+..++   |.|||+|| +.||+.|....+.|.+..+++.  ++.++.|..|.           
T Consensus         6 ~aP~F~~~a~~~g~~~~vsLsd~kGk~vVL~FyP~~~tp~C~~e~~~f~~~~~~f~~~~~~v~gIS~Ds~~sh~~f~~~~   85 (186)
T d1n8ja_           6 KIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVSPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSS   85 (186)
T ss_dssp             BCCCCEEEEEETTEEEEEEHHHHTTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHHHC
T ss_pred             cCCCCEeeeeeCCeeEEEeHHHhCCCeEEEEEEeccCCCccHHHHHHHHHhhhhcccccEEEEeccccCHHHHHHHhccc
Confidence            457777664 4554  444444   88899999 8899999999999999988884  58888888863           


Q ss_pred             --------------cHHHHHhcCCCC----C--ccEEEEE-cCCeEEEEEc-----CCCHHHHHHHHHH
Q 031271          117 --------------LPEAAKAFDLID----V--LPTFVLV-KRGKEIDRVV-----GAKKDELQMKTEK  159 (162)
Q Consensus       117 --------------~~~l~~~~~i~~----~--~Ptiv~~-~~Gk~i~~~~-----g~~~~~l~~~l~~  159 (162)
                                    ...+++.||+ .    +  .|+.+++ ++|++.....     +.+.+++.+.|+.
T Consensus        86 ~~~~~~~fpllsD~~~~v~~~yGv-~~~~~g~~~r~tfiID~~G~Ir~~~v~~~~~~r~~~eiL~~lka  153 (186)
T d1n8ja_          86 ETIAKIKYAMIGDPTGALTRNFDN-MREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKA  153 (186)
T ss_dssp             TTGGGCCSEEEECTTSHHHHHTTC-EETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHH
T ss_pred             cccccccccccccHHHHHHHHhCC-CcccCCcceeeEEEECchheEEEEeecCCCcccCHHHHHHHHHH
Confidence                          2357888887 3    3  3444444 8898765442     3367777777764

>d1z6ma1 c.47.1.13 (A:1-172) Hypothetical protein EF0770 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Hypothetical protein EF0770
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.36  E-value=4.8e-07  Score=62.87  Aligned_cols=78  Identities=19%  Similarity=0.183  Sum_probs=59.1

Q ss_pred             ceEEEEEecCCChhhhhhhHHHHHHHHhcCC---cEEEEEECCC------------------------------------
Q 031271           76 LKVVIYYTAAWCGPCKFIEPYVKDFAAMYTD---VQFIKIDVDW------------------------------------  116 (162)
Q Consensus        76 k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~---v~f~~vd~d~------------------------------------  116 (162)
                      +.+|+.|+...||+|+++.+.+.++.+++++   +.++.+....                                    
T Consensus        25 ~v~I~ef~d~~Cp~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (172)
T d1z6ma1          25 PVKMIEFINVRCPYCRKWFEESEELLAQSVKSGKVERIIKLFDKEKESLQRGNVMHHYIDYSAPEQALSALHKMFATQDE  104 (172)
T ss_dssp             SEEEEEEECTTCHHHHHHHHHHHHHHHHHHHTTSEEEEEEECCCCSTTTHHHHHHHTTCCTTCHHHHHHHHHHHHHTHHH
T ss_pred             CEEEEEEECCCCHhHHHHHHHHhhhhhhhccccceeeeeccccccchhhHHHHHHHHHHHHccchhHHHHHHHHHHhccc
Confidence            3448999999999999999999999888753   5554444310                                    


Q ss_pred             ------------------------------cHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC-CHHHHHHHHHH
Q 031271          117 ------------------------------LPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQMKTEK  159 (162)
Q Consensus       117 ------------------------------~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~-~~~~l~~~l~~  159 (162)
                                                    ....++++|| .++||+++  ||+.+   .|. +.++|.++|++
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~gI-~gTPt~~I--ng~~~---~g~~~~~~~~~~id~  172 (172)
T d1z6ma1         105 WGNLTLEEVATYAEKNLGLKEQKDATLVSAVIAEANAAHI-QFVPTIII--GEYIF---DESVTEEELRGYIEK  172 (172)
T ss_dssp             HTTSCHHHHHHHHHHTSCCCCCCCHHHHHHHHHHHHHHTC-CSSCEEEE--TTEEE---CTTCCHHHHHHHHTC
T ss_pred             cchHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHcCC-CcCCEEEE--CCEEe---cCCCCHHHHHHHHcC
Confidence                                          0135567999 99999877  99764   566 89999998864

>d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli [TaxId: 562]

Probab=98.35  E-value=3e-07  Score=57.54  Aligned_cols=75  Identities=11%  Similarity=0.232  Sum_probs=56.2

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCc----HHHHHhc--CCCCCccEEEEEcCCeEEEEEcCCCHHH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWL----PEAAKAF--DLIDVLPTFVLVKRGKEIDRVVGAKKDE  152 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~----~~l~~~~--~i~~~~Ptiv~~~~Gk~i~~~~g~~~~~  152 (162)
                      ++.|..+||++|.++...|.++...+.++.+..+|++..    .++....  ++ ..+|.+++  +|+.+   .|+  ++
T Consensus         3 vviysk~~Cp~C~~aK~ll~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~tvPqIfi--~g~~I---GG~--~e   74 (85)
T d1egoa_           3 TVIFGRSGCPYCVRAKDLAEKLSNERDDFQYQYVDIRAEGITKEDLQQKAGKPV-ETVPQIFV--DQQHI---GGY--TD   74 (85)
T ss_dssp             EEEECCTTSTHHHHHHHHHHHHHHHHSSCEEEEECHHHHTCCSHHHHHHTCCCS-CCSCEEEE--TTEEE---ESS--HH
T ss_pred             EEEEeCCCCHhHHHHHHHHHHcCCCCCCceEEEEecCCCHHHHHHHHHHhcCCC-CCCCEEEE--CCEEE---ECH--HH
Confidence            567999999999999999999999998999998887643    3444443  35 67999755  88755   466  45


Q ss_pred             HHHHHHHHh
Q 031271          153 LQMKTEKRR  161 (162)
Q Consensus       153 l~~~l~~~~  161 (162)
                      |.+++++.+
T Consensus        75 l~~~~~~~~   83 (85)
T d1egoa_          75 FAAWVKENL   83 (85)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHhcC
Confidence            666666653

>d1a8la1 c.47.1.2 (A:1-119) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.11  E-value=2.5e-05  Score=51.71  Aligned_cols=81  Identities=21%  Similarity=0.388  Sum_probs=60.7

Q ss_pred             EEEEec-CCChhhhhhhHHHHHHHHhcCCcEEEEEECCC--cHHHHHhcCCCCCccEEEEEcCCeEE-EEEcCC-CHHHH
Q 031271           79 VIYYTA-AWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDW--LPEAAKAFDLIDVLPTFVLVKRGKEI-DRVVGA-KKDEL  153 (162)
Q Consensus        79 vv~F~a-~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~--~~~l~~~~~i~~~~Ptiv~~~~Gk~i-~~~~g~-~~~~l  153 (162)
                      ++.|.. ..|+.|..+...+++++..-+.+.+...+.+.  +.+++++|++ ...|++++..+|+.. -++.|. .-.++
T Consensus        26 l~~~~~~~~~~~~~e~~~ll~ela~lSdki~~~~~~~~~~e~~~~~~~~~v-er~Ps~~i~~~g~~~gIrF~GiP~GhEf  104 (119)
T d1a8la1          26 LIVFVRKDHCQYCDQLKQLVQELSELTDKLSYEIVDFDTPEGKELAKRYRI-DRAPATTITQDGKDFGVRYFGLPAGHEF  104 (119)
T ss_dssp             EEEEECSSSCTTHHHHHHHHHHHHTTCTTEEEEEEETTSHHHHHHHHHTTC-CSSSEEEEEETTBCCSEEEESCCCTTHH
T ss_pred             EEEEecCCCchhHHHHHHHHHHHHhhCCCeEEEEeccCcchhhhHHHhhcc-ccCceEEEecCCcccceEEEeccCchhH
Confidence            344433 57999999999999998866668887777764  5789999999 999999999887652 356676 55566


Q ss_pred             HHHHHHH
Q 031271          154 QMKTEKR  160 (162)
Q Consensus       154 ~~~l~~~  160 (162)
                      ..+|...
T Consensus       105 ~SlilaI  111 (119)
T d1a8la1         105 AAFLEDI  111 (119)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6665543

>d1ktea_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.06  E-value=2.6e-06  Score=55.24  Aligned_cols=61  Identities=11%  Similarity=0.204  Sum_probs=47.8

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHH-----HHHhcCCCCCccEEEEEcCCeEE
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPE-----AAKAFDLIDVLPTFVLVKRGKEI  142 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~-----l~~~~~i~~~~Ptiv~~~~Gk~i  142 (162)
                      ++.|+.+|||+|.+....|.++.-.+..+.+..+|.+..+.     +.+..|. ..+|++.+  +|+.+
T Consensus        14 Vviysk~~Cp~C~~ak~ll~~~~~~~~~~~~~e~d~~~d~~~~~~~l~~~~g~-~tvPqIfi--~g~~I   79 (105)
T d1ktea_          14 VVVFIKPTCPFCRKTQELLSQLPFKEGLLEFVDITATSDTNEIQDYLQQLTGA-RTVPRVFI--GKECI   79 (105)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHSCBCTTSEEEEEGGGSTTHHHHHHHHHHHHSC-CCSCEEEE--TTEEE
T ss_pred             EEEEECCCCchHHHHHHHHHHhCCccceeeeeecccccccHHHHHHHhhccCC-CcCcEEEE--CCEEE
Confidence            57799999999999999998876666678888888876543     3344577 89998854  88765

>d1iloa_ c.47.1.1 (A:) MTH985, a thioredoxin {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH985, a thioredoxin
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.04  E-value=1.1e-05  Score=49.27  Aligned_cols=69  Identities=14%  Similarity=0.253  Sum_probs=53.4

Q ss_pred             EecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCC--CHHHHHHHH
Q 031271           82 YTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA--KKDELQMKT  157 (162)
Q Consensus        82 F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~--~~~~l~~~l  157 (162)
                      ..++.|+.|.++....++..+++ ++..-...++.-+++. +||+ ..+|.+++  ||+.+.  .|.  +.++++++|
T Consensus         6 Vlg~gC~~C~~~~~~v~~a~~e~-gi~a~v~kv~d~~ei~-~ygV-mstPalvI--dg~vv~--~G~vPs~~ei~~~L   76 (77)
T d1iloa_           6 IYGTGCANCQMLEKNAREAVKEL-GIDAEFEKIKEMDQIL-EAGL-TALPGLAV--DGELKI--MGRVASKEEIKKIL   76 (77)
T ss_dssp             EECSSSSTTHHHHHHHHHHHHHT-TCCEEEEEECSHHHHH-HHTC-SSSSCEEE--TTEEEE--CSSCCCHHHHHHHC
T ss_pred             EeCCCCccHHHHHHHHHHHHHHc-CCceEEEEeCCHHHHH-HcCC-cCCCEEEE--CCEEEE--EecCCCHHHHHHHh
Confidence            34899999999999999988887 4333333446666776 6999 99999987  898874  453  899998876

>d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli, Grx3 [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli, Grx3 [TaxId: 562]

Probab=98.01  E-value=1e-05  Score=49.79  Aligned_cols=56  Identities=20%  Similarity=0.303  Sum_probs=43.7

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHH----HHHhcCCCCCccEEEEEcCCeEE
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPE----AAKAFDLIDVLPTFVLVKRGKEI  142 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~----l~~~~~i~~~~Ptiv~~~~Gk~i  142 (162)
                      |..|..+||++|.++...|++.     ++.|..+|++.+++    +.+..|. ..+|.+++  +|+.+
T Consensus         3 I~iys~~~Cp~C~~ak~~L~~~-----~i~y~~~di~~~~~~~~~~~~~~g~-~tvP~i~i--~~~~I   62 (82)
T d1fova_           3 VEIYTKETCPYCHRAKALLSSK-----GVSFQELPIDGNAAKREEMIKRSGR-TTVPQIFI--DAQHI   62 (82)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHH-----TCCCEEEECTTCSHHHHHHHHHHSS-CCSCEEEE--TTEEE
T ss_pred             EEEEeCCCCHhHHHHHHHHHHc-----CCCeEEEeccchHHHHHHHHHHhCC-CCCCeEEE--CCEEE
Confidence            5668999999999999888774     67788888886654    4556688 99998754  88765

>d1fvka_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=98.01  E-value=6.3e-06  Score=57.76  Aligned_cols=39  Identities=18%  Similarity=0.357  Sum_probs=28.5

Q ss_pred             ceEEEEEecCCChhhhhhhHHHH---HHHHhcCC-cEEEEEEC
Q 031271           76 LKVVIYYTAAWCGPCKFIEPYVK---DFAAMYTD-VQFIKIDV  114 (162)
Q Consensus        76 k~vvv~F~a~wC~~C~~~~~~l~---~~~~~~~~-v~f~~vd~  114 (162)
                      +++|+.|+.-.||+|+++.+.+.   ++...+++ +.|....+
T Consensus        19 ~~~VvEffdy~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~   61 (188)
T d1fvka_          19 APQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHV   61 (188)
T ss_dssp             CCSEEEEECTTCHHHHHHHHTTCHHHHHHTTSCTTCCEEEEEC
T ss_pred             CCEEEEEECCCChhhHHHHHHHHHHHHHhhccCCceEEEEEec
Confidence            45589999999999999998774   34444544 66666655

>d1xcca_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=97.89  E-value=3.2e-05  Score=56.39  Aligned_cols=105  Identities=10%  Similarity=0.079  Sum_probs=73.2

Q ss_pred             eccccceeEEecCCC-eeee----eCceEEEEEe-cCCChhhhhhhHHHHHHHHhcC--CcEEEEEECCC----------
Q 031271           55 IYCINEMVLNINDGG-NVVF----WVLKVVIYYT-AAWCGPCKFIEPYVKDFAAMYT--DVQFIKIDVDW----------  116 (162)
Q Consensus        55 ~~~~~~~~~~~~~~~-~~~~----~~k~vvv~F~-a~wC~~C~~~~~~l~~~~~~~~--~v~f~~vd~d~----------  116 (162)
                      ....|+|.+...+++ .+..    .++.+||+|| +.||+.|......|.+...++.  ++.++.|..|.          
T Consensus         5 Gd~aPdF~l~~~~~~g~i~l~d~~~gk~vVLfFyP~dfTpvCttEl~~f~~~~~eF~~~~~~vigiS~Ds~~sh~~w~~~   84 (219)
T d1xcca_           5 GATFPNFTAKASGIDGDFELYKYIENSWAILFSHPNDFTPVCTTELAELGKMHEDFLKLNCKLIGFSCNSKESHDKWIED   84 (219)
T ss_dssp             TCBCCCCEECBTTCSSCEEHHHHTTTSEEEEECCSCTTCHHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHH
T ss_pred             CCCCCCcEeeccCCCCcEEeHHHcCCCeEEEEEEcCCCCcccchhHHHHHHhhhhhcccceEEEeecCccHhHHhHHhhh
Confidence            345688888765433 3433    3488999999 8999999999999988888875  58888888763          


Q ss_pred             ------------------cHHHHHhcCCCCC----------cc--E-EEEEcCCeEEEEEc-----CCCHHHHHHHHHHH
Q 031271          117 ------------------LPEAAKAFDLIDV----------LP--T-FVLVKRGKEIDRVV-----GAKKDELQMKTEKR  160 (162)
Q Consensus       117 ------------------~~~l~~~~~i~~~----------~P--t-iv~~~~Gk~i~~~~-----g~~~~~l~~~l~~~  160 (162)
                                        ...+++.||+ ..          ++  + |++-++|++.....     |.+.+++.+.|+.+
T Consensus        85 ~~~~~~~~~l~fpllsD~~~~va~~ygv-~~~~~~~~~~~~~~~R~tFiIDp~g~Ir~~~~~~~~~gr~~~EiLr~l~aL  163 (219)
T d1xcca_          85 IKYYGKLNKWEIPIVCDESRELANKLKI-MDEQEKDITGLPLTCRCLFFISPEKKIKATVLYPATTGRNAHEILRVLKSL  163 (219)
T ss_dssp             HHHHHTCSCCCCCEEECTTSHHHHHHTC-EEEEEECTTSCEEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             hHhhcccCCCCcccccccccHHHHHhCC-cccccccCcccceeeeeeEEEcCcceEEEEEEeCCCcccCHHHHHHHHHHH
Confidence                              2257888887 21          22  3 44448888765432     44788888887653

>d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: C-terminal, Grx domain of Hybrid-Prx5
species: Haemophilus influenzae [TaxId: 727]

Probab=97.88  E-value=3.4e-05  Score=46.40  Aligned_cols=56  Identities=18%  Similarity=0.283  Sum_probs=42.4

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcH---HHHHhcCCCCCccEEEEEcCCeEE
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLP---EAAKAFDLIDVLPTFVLVKRGKEI  142 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~---~l~~~~~i~~~~Ptiv~~~~Gk~i  142 (162)
                      |+.|+.+||++|.++...|++.     ++.|..++++.+.   .+.+..+. ..+|.+++  +|+.+
T Consensus         7 I~iYs~~~C~~C~~ak~lL~~~-----~i~~~~~~v~~~~~~~~~~~~~~~-~tvP~i~i--~g~~I   65 (74)
T d1nm3a1           7 ISIFTKPGCPFCAKAKQLLHDK-----GLSFEEIILGHDATIVSVRAVSGR-TTVPQVFI--GGKHI   65 (74)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHH-----TCCCEEEETTTTCCHHHHHHHTCC-SSSCEEEE--TTEEE
T ss_pred             EEEEECCCCHHHHHHHHHHHHc-----CCCeEEEEccCcHHHHHHHHHhCC-ccCCEEEE--CCEEE
Confidence            5779999999999999888775     5666677776443   34556788 99998754  78665

>d2djka1 c.47.1.2 (A:1-133) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=97.63  E-value=0.00014  Score=48.36  Aligned_cols=82  Identities=13%  Similarity=0.128  Sum_probs=62.0

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCC-cEEEEEECCCcHHHHHhcCC-CCCccEEEEE-cCCeEEEEE--cCC-CHHH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDL-IDVLPTFVLV-KRGKEIDRV--VGA-KKDE  152 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~-v~f~~vd~d~~~~l~~~~~i-~~~~Ptiv~~-~~Gk~i~~~--~g~-~~~~  152 (162)
                      ++.|+... .........+.+++++|.+ +.|+.+|.+......+.||+ ....|.++++ .+++....+  .+. +.+.
T Consensus        27 ~~lf~~~~-~~~~~~~~~~~~vA~~~~~ki~Fv~vd~~~~~~~l~~~gl~~~~~P~~~i~~~~~~~~~~~~~~~~i~~~~  105 (133)
T d2djka1          27 AYIFAETA-EERKELSDKLKPIAEAQRGVINFGTIDAKAFGAHAGNLNLKTDKFPAFAIQEVAKNQKFPFDQEKEITFEA  105 (133)
T ss_dssp             EEEECSCS-SSHHHHHHHHHHHHHSSTTTSEEEEECTTTTGGGTTTTTCCSSSSSEEEEECTTTCCBCCCCSSSCCCHHH
T ss_pred             EEEEeCCc-hHHHHHHHHHHHHHHHhcCceEEEEEeHHHhHHHHHHhcCCcccCCcEEEEEcCCCceecCCccccCCHHH
Confidence            67777654 4667888999999999987 99999999998888888887 1458998887 333333222  233 8999


Q ss_pred             HHHHHHHHh
Q 031271          153 LQMKTEKRR  161 (162)
Q Consensus       153 l~~~l~~~~  161 (162)
                      |.+|+++++
T Consensus       106 i~~Fi~d~~  114 (133)
T d2djka1         106 IKAFVDDFV  114 (133)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998865

>d2b5ea3 c.47.1.2 (A:240-364) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.47  E-value=0.00067  Score=44.68  Aligned_cols=82  Identities=10%  Similarity=0.110  Sum_probs=62.2

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCC-cEEEEEECCCcHHHHHhcCCCCCccEEEEEc-CCeEEEEEc----------
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVK-RGKEIDRVV----------  146 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~-v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~-~Gk~i~~~~----------  146 (162)
                      ++.|+.+. ..-....+.+.+++++|++ +.|+.+|.++....++.||+....|.+++.. .+.....+.          
T Consensus        21 ~~~f~~~~-~~~~~~~~~~~~vAk~fkgki~Fv~~D~~~~~~~l~~fgl~e~~P~~~i~~~~~~~ky~~~~~~~~~~~~~   99 (125)
T d2b5ea3          21 GYLFYNDE-EELEEYKPLFTELAKKNRGLMNFVSIDARKFGRHAGNLNMKEQFPLFAIHDMTEDLKYGLPQLSEEAFDEL   99 (125)
T ss_dssp             EEEEESSH-HHHHHHHHHHHHHHHHTTTTCEEEEEEHHHHTTHHHHTTCCSCSSEEEEEETTTTEEEECCCCCHHHHHTC
T ss_pred             EEEEeCCh-HHHHHHHHHHHHHHHHhcCeeEEEEEchHHhHHHHHHcCCCccCCcEEEEecccCcccccchhhhhhcccc
Confidence            78788764 3445778899999999988 9999999998888899999855699988773 222222221          


Q ss_pred             ---C-CCHHHHHHHHHHHh
Q 031271          147 ---G-AKKDELQMKTEKRR  161 (162)
Q Consensus       147 ---g-~~~~~l~~~l~~~~  161 (162)
                         + .+.+.|.+|+++++
T Consensus       100 ~~~~e~t~~~i~~F~~d~l  118 (125)
T d2b5ea3         100 SDKIVLESKAIESLVKDFL  118 (125)
T ss_dssp             CSCCCCCHHHHHHHHHHHH
T ss_pred             cccccCCHHHHHHHHHHHH
Confidence               2 38999999998875

>d2axoa1 c.47.1.19 (A:38-262) Hypothetical protein Atu2684 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Atu2684-like
domain: Hypothetical protein Atu2684
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.27  E-value=0.00096  Score=48.47  Aligned_cols=81  Identities=19%  Similarity=0.223  Sum_probs=58.7

Q ss_pred             ceEEEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCC-----------cH-------HHHHhcCCCCCccEEEEEc
Q 031271           76 LKVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDW-----------LP-------EAAKAFDLIDVLPTFVLVK  137 (162)
Q Consensus        76 k~vvv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~-----------~~-------~l~~~~~i~~~~Ptiv~~~  137 (162)
                      +.||=.|++.||+.|-.....|.++.+. +++..+.+.+|-           .+       .+++.++. ..+||=-++.
T Consensus         6 ~aVVElFTSqgCssCPpAd~~L~~L~~~-~~Vi~La~HVdYWd~lGw~D~fa~~~~t~RQ~~Y~~~~g~-~~vyTPq~vv   83 (225)
T d2axoa1           6 KGVVELFTSQGCASCPPADEALRKMIQK-GDVVGLSYHVDYWNYLGWTDSLASKENTERQYGYMRALGR-NGVYTPQAIL   83 (225)
T ss_dssp             CCEEEEEECTTCTTCHHHHHHHHHHHHH-TSSEEEEEECSTTCSSSSCCTTCCHHHHHHHHHHHHHTTC-SCCCSSEEEE
T ss_pred             CcEEEEeeCCCCCCCHHHHHHHHHhhCC-CCEEEEEeccccccccCCCCCCCCchhhHHHHHHHHhcCC-CCCCceeEEE
Confidence            3447889999999999999999999774 678888887751           12       35666787 7666533345


Q ss_pred             CCeEEEEEcCCCHHHHHHHHHHH
Q 031271          138 RGKEIDRVVGAKKDELQMKTEKR  160 (162)
Q Consensus       138 ~Gk~i~~~~g~~~~~l~~~l~~~  160 (162)
                      ||+.-  ..|.+...+...|.++
T Consensus        84 nG~~~--~~gs~~~~~~~~i~~~  104 (225)
T d2axoa1          84 NGRDH--VKGADVRGIYDRLDAF  104 (225)
T ss_dssp             TTTEE--EETTCHHHHHHHHHHH
T ss_pred             eCccc--ccccCHHHHHHHHHHH
Confidence            88643  4577888888887765

>d1a8ya2 c.47.1.3 (A:127-228) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=97.16  E-value=0.0022  Score=40.74  Aligned_cols=74  Identities=16%  Similarity=0.182  Sum_probs=53.3

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhc-CCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcC--CeEEEEEcC--CCHHHH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMY-TDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKR--GKEIDRVVG--AKKDEL  153 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~-~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~--Gk~i~~~~g--~~~~~l  153 (162)
                      ||-|+.+--.+   ....+.+++..+ +++.|..   +.++++++.+|+  ..|++++|++  .+.+ .+.|  .+.+.|
T Consensus        22 VvGfF~~~~~~---~~~~F~~~A~~~rd~~~F~~---t~d~~va~~~~v--~~~~vvlfr~fde~~~-~~~~~~~t~~~i   92 (102)
T d1a8ya2          22 LIGYFKNKDSE---HYKAFKEAAEEFHPYIPFFA---TFDSKVAKKLTL--KLNEIDFYEAFMEEPV-TIPDKPNSEEEI   92 (102)
T ss_dssp             EEEECSSTTCH---HHHHHHHHHHHHTTTSCEEE---ECCHHHHHHHCC--CTTCEEEECTTCSSEE-ECSSSSCCHHHH
T ss_pred             EEEEECCCCcH---HHHHHHHHHHHcCCCceEEE---ECCHHHHHHcCC--CCCCEEEeeecCCCce-ecCCCCCCHHHH
Confidence            77777653333   455677888777 4588876   567899999999  5899999953  2222 2345  389999


Q ss_pred             HHHHHHHh
Q 031271          154 QMKTEKRR  161 (162)
Q Consensus       154 ~~~l~~~~  161 (162)
                      .+||+++.
T Consensus        93 ~~Fi~~n~  100 (102)
T d1a8ya2          93 VNFVEEHR  100 (102)
T ss_dssp             HHHHHHTC
T ss_pred             HHHHHHhc
Confidence            99999886

>d1bjxa_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.94  E-value=0.0034  Score=40.13  Aligned_cols=95  Identities=17%  Similarity=0.096  Sum_probs=66.5

Q ss_pred             eeEeechhhHHHHHHhhhcccccccccCCceeeeccccceeEEecCCCeeeeeCceEEEEEecCCChhhhhhhHHHHHHH
Q 031271           22 VMELQSKHQWRSQYEASKQSDRLVMTNETGFCLIYCINEMVLNINDGGNVVFWVLKVVIYYTAAWCGPCKFIEPYVKDFA  101 (162)
Q Consensus        22 v~~i~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~~~l~~~~  101 (162)
                      ...+++.+++++.+..    +..+                                 ||-|+.+--.   .....+.+++
T Consensus         2 a~~l~~~~~~e~f~~~----~~v~---------------------------------VVGfF~~~~~---~~~~~F~~~A   41 (110)
T d1bjxa_           2 ATTLPDGAAAESLVES----SEVA---------------------------------VIGFFKDVES---DSAKQFLQAA   41 (110)
T ss_dssp             EEECCSHHHHHHHHHH----SSEE---------------------------------EEEECTTTTS---HHHHHHHHHH
T ss_pred             ceEcCCHHHHHHHhcc----CCeE---------------------------------EEEEEcCCCc---hHHHHHHHHH
Confidence            3567788888888853    4556                                 7777765332   3455688888


Q ss_pred             HhcCCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCe-EEEEEcCC-CHHHHHHHHHHHh
Q 031271          102 AMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGK-EIDRVVGA-KKDELQMKTEKRR  161 (162)
Q Consensus       102 ~~~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk-~i~~~~g~-~~~~l~~~l~~~~  161 (162)
                      +.++++.|..   ....+++..+++ . .|++++|++.. ....+.|. +.+.|.+||+.+.
T Consensus        42 ~~~~d~~F~~---t~~~~v~~~~~v-~-~~~Ivl~k~~de~~~~~~~~~~~~~l~~fi~~~~   98 (110)
T d1bjxa_          42 EAIDDIPFGI---TSNSDVFSKYQL-D-KDGVVLFKKFDEGRNNFEGEVTKENLLDFIKHNQ   98 (110)
T ss_dssp             HHCSSSCEEE---ECCSHHHHHTTC-S-SCEEEEEESSSSSBCCCCSCCCHHHHHHHHHHHS
T ss_pred             HhCcCceEEE---ECCHHHHHHcCC-C-CCeEEEeccCCccccccCCCCCHHHHHHHHHHcC
Confidence            8888887766   344468899999 5 49999996532 22233455 8999999998763

>d1wika_ c.47.1.1 (A:) Thioredoxin-like protein 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.82  E-value=0.0019  Score=41.54  Aligned_cols=51  Identities=22%  Similarity=0.241  Sum_probs=38.9

Q ss_pred             CCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHHH----HHhcCCCCCccEEEEEcCCeEEE
Q 031271           85 AWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEA----AKAFDLIDVLPTFVLVKRGKEID  143 (162)
Q Consensus        85 ~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~l----~~~~~i~~~~Ptiv~~~~Gk~i~  143 (162)
                      |.|++|.++...|.++     ++.|..+|++..+++    ....+. ..+|.++  -+|+.|.
T Consensus        28 p~Cp~c~~ak~lL~~~-----~i~~~~~~v~~~~~~~~~l~~~t~~-~TvPqIF--i~g~~IG   82 (109)
T d1wika_          28 AKCGFSKQILEILNST-----GVEYETFDILEDEEVRQGLKTFSNW-PTYPQLY--VRGDLVG   82 (109)
T ss_dssp             CCSSTHHHHHHHHHHT-----CSCEEEEESSSCHHHHHHHHHHHSC-CSSCEEE--CSSSEEE
T ss_pred             CCChHHHHHHHHHHhc-----CCCceEEEecccHHHHHHHHHhcCC-CCCCeEE--ECCEEEc
Confidence            7899999999888653     578888899887654    345677 8899875  4887664

>d1hd2a_ c.47.1.10 (A:) Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.77  E-value=0.0051  Score=41.81  Aligned_cols=92  Identities=18%  Similarity=0.059  Sum_probs=58.1

Q ss_pred             eeccccceeEEe-cCCCeeee----eCceEEEEEe-cCCChhh-hhhhHHHHHHHHhcC--C-cEEEEEECC--------
Q 031271           54 LIYCINEMVLNI-NDGGNVVF----WVLKVVIYYT-AAWCGPC-KFIEPYVKDFAAMYT--D-VQFIKIDVD--------  115 (162)
Q Consensus        54 ~~~~~~~~~~~~-~~~~~~~~----~~k~vvv~F~-a~wC~~C-~~~~~~l~~~~~~~~--~-v~f~~vd~d--------  115 (162)
                      .....|++++.. .+|+.+..    .+|+|||+|| ..|++.| ....+.+.+....+.  + ..++.+.++        
T Consensus         5 VGd~aP~f~l~~~~~~~~v~l~d~~~gk~vvL~fyP~afTp~Ct~~~~~~~~~~~~~~~~~g~~~i~~~s~~~~~~~~~~   84 (161)
T d1hd2a_           5 VGDAIPAVEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGVQVVACLSVNDAFVTGEW   84 (161)
T ss_dssp             TTCBCCCCEEECSSTTCEEEHHHHTTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHTTTCCEEEEEESSCHHHHHHH
T ss_pred             CCCcCCCeEEEecCCCcEEEhHHHhCCCeEEEEEEeccccccchhhhhhHHHhhhHHHHHcCCeEEEEEecCchhhhhhh
Confidence            345578899864 55777754    3489999999 7899999 456776766544432  2 334344442        


Q ss_pred             ---------------CcHHHHHhcCCCCC-----------cc--EEEEEcCCeEEEEEc
Q 031271          116 ---------------WLPEAAKAFDLIDV-----------LP--TFVLVKRGKEIDRVV  146 (162)
Q Consensus       116 ---------------~~~~l~~~~~i~~~-----------~P--tiv~~~~Gk~i~~~~  146 (162)
                                     .+.++++.||+ ..           ..  ++++..+|++.....
T Consensus        85 ~~~~~~~~~~~llsD~~~~~a~~~g~-~~~~~~~g~~~~~~s~r~~~I~~~G~I~~~~v  142 (161)
T d1hd2a_          85 GRAHKAEGKVRLLADPTGAFGKETDL-LLDDSLVSIFGNRRLKRFSMVVQDGIVKALNV  142 (161)
T ss_dssp             HHHTTCTTTCEEEECTTCHHHHHHTC-BCCSTTHHHHSSCCBCCEEEEEETTEEEEEEE
T ss_pred             hhhcccccccccccCCcceeeeeeee-eeccccCccccccEEeEEEEEECCCEEEEEEE
Confidence                           34468888886 21           02  366668998766543

>d1g7oa2 c.47.1.5 (A:1-75) Glutaredoxin 2 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Glutaredoxin 2
species: Escherichia coli [TaxId: 562]

Probab=95.54  E-value=0.083  Score=30.88  Aligned_cols=70  Identities=10%  Similarity=0.066  Sum_probs=49.1

Q ss_pred             EEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEEEEEcCCCHHHHHHHHHHH
Q 031271           81 YYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQMKTEKR  160 (162)
Q Consensus        81 ~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~~~~~l~~~l~~~  160 (162)
                      .|+.+.||+|++.+-.+....-   .+.+..++.+...++.+..+. ..+|+++. .+|+.+.     ....+.++|++.
T Consensus         3 LY~~~~cP~~~rvr~~l~~kgi---~~e~~~~~~~~~~~~~~~~p~-~~VP~L~~-~dg~~i~-----eS~~I~~yLd~~   72 (75)
T d1g7oa2           3 LYIYDHCPYCLKARMIFGLKNI---PVELHVLLNDDAETPTRMVGQ-KQVPILQK-DDSRYMP-----ESMDIVHYVDKL   72 (75)
T ss_dssp             EEECTTCHHHHHHHHHHHHHTC---CCEEEECCTTTTHHHHHHHSS-SCCCEEEE-TTTEEEE-----CHHHHHHHHHHH
T ss_pred             EEccCCCCchHHHHHHHHHhCC---CcccccccccchHHHHHhCCC-CceEEEEE-cCCCEEe-----cHHHHHHHHHHh
Confidence            3678899999998877766432   245555566666778888888 99998764 5776654     356677777764

>d1un2a_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=95.05  E-value=0.0039  Score=43.96  Aligned_cols=41  Identities=17%  Similarity=0.331  Sum_probs=32.6

Q ss_pred             CceEEEEEecCCChhhhhhhHHHH---HHHHhcCC-cEEEEEECC
Q 031271           75 VLKVVIYYTAAWCGPCKFIEPYVK---DFAAMYTD-VQFIKIDVD  115 (162)
Q Consensus        75 ~k~vvv~F~a~wC~~C~~~~~~l~---~~~~~~~~-v~f~~vd~d  115 (162)
                      +++.|+.|+.-+||+|.++.|.+.   ++.+.+++ +.|..+.+.
T Consensus       113 ~~~~VvEffsy~Cp~C~~~e~~l~~~~~~~~~~~~~v~~~~~~~~  157 (195)
T d1un2a_         113 GAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHVN  157 (195)
T ss_dssp             TCCSEEEEECTTCHHHHHHHHTSCHHHHHTTSSCTTCCEEEEECS
T ss_pred             CCceEEEEEecCCccccccchhhhHHHHHHhhcCCCcEEEEEecC
Confidence            466689999999999999999774   66667775 788777664

>d1t1va_ c.47.1.14 (A:) SH3BGRL3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: SH3BGR (SH3-binding, glutamic acid-rich protein-like)
domain: SH3BGRL3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.67  E-value=0.074  Score=32.45  Aligned_cols=57  Identities=11%  Similarity=0.117  Sum_probs=39.8

Q ss_pred             EEEEecCCCh------hhhhhhHHHHHHHHhcCCcEEEEEECCCcHHHHH----hc--CCCCCccEEEEEcCCeEEE
Q 031271           79 VIYYTAAWCG------PCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAK----AF--DLIDVLPTFVLVKRGKEID  143 (162)
Q Consensus        79 vv~F~a~wC~------~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~l~~----~~--~i~~~~Ptiv~~~~Gk~i~  143 (162)
                      +..|+++||+      .|.++...|+.     .++.|-.+|++.++...+    .-  +. ..+|.++  .+|+.+.
T Consensus         4 i~vy~ts~~~~~~~~~~~~r~~~lL~~-----~~I~y~~iDi~~d~~~~~~~~~~~g~~~-~t~Pqif--v~~~~iG   72 (93)
T d1t1va_           4 LRVYSTSVTGSREIKSQQSEVTRILDG-----KRIQYQLVDISQDNALRDEMRTLAGNPK-ATPPQIV--NGNHYCG   72 (93)
T ss_dssp             EEEEECSSCSCHHHHHHHHHHHHHHHH-----TTCCCEEEETTSCHHHHHHHHHHTTCTT-CCSCEEE--ETTEEEE
T ss_pred             EEEEEccCcCChhhHHHHHHHHHHHHH-----CCCceEEEEecCchhHHHHHHHhccCCC-ceeEEEE--ECCEEEe
Confidence            5668899995      78888777776     378888999987765432    22  23 4677765  4887665

>d1nm3a2 c.47.1.10 (A:3-165) N-terminal, Prx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: N-terminal, Prx domain of Hybrid-Prx5
species: Haemophilus influenzae [TaxId: 727]

Probab=93.67  E-value=0.32  Score=32.39  Aligned_cols=42  Identities=12%  Similarity=0.162  Sum_probs=28.6

Q ss_pred             ccccceeEEecCCC---eeee----eCceEEEEEe-cCCChhhhhhhHHH
Q 031271           56 YCINEMVLNINDGG---NVVF----WVLKVVIYYT-AAWCGPCKFIEPYV   97 (162)
Q Consensus        56 ~~~~~~~~~~~~~~---~~~~----~~k~vvv~F~-a~wC~~C~~~~~~l   97 (162)
                      +..|++++....|+   .+..    .+|.|||+|| +.+.+.|-.....+
T Consensus         5 d~~Pdftl~~~~~~~~~~~slsd~~~gk~VVL~f~P~afTp~Ct~e~~~~   54 (163)
T d1nm3a2           5 KKVPQVTFRTRQGDKWVDVTTSELFDNKTVIVFSLPGAFTPTCSSSHLPR   54 (163)
T ss_dssp             SBCCCCEEEEEETTEEEEEEHHHHHTTSEEEEEEESCSSCHHHHHTHHHH
T ss_pred             CCCCCeEEEEEcCCCceEEEHHHHhCCCeEEEEEEeccccccchhhhhhh
Confidence            34678888766664   3432    3478888777 77999999765443

>d1t4za_ c.47.1.15 (A:) Adaptive-response sensory-kinase SasA, N-terminal domain {Synechococcus elongatus [TaxId: 32046]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: KaiB-like
domain: Adaptive-response sensory-kinase SasA, N-terminal domain
species: Synechococcus elongatus [TaxId: 32046]

Probab=93.12  E-value=0.55  Score=29.29  Aligned_cols=78  Identities=18%  Similarity=0.207  Sum_probs=55.7

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhc-CC--cEEEEEECCCcHHHHHhcCCCCCccEEEEE-cCCeEEEEEcCCC-HHHH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMY-TD--VQFIKIDVDWLPEAAKAFDLIDVLPTFVLV-KRGKEIDRVVGAK-KDEL  153 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~-~~--v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~-~~Gk~i~~~~g~~-~~~l  153 (162)
                      .+..|.+.-+.+......+.++-+.+ .+  +.+-.||+.++|+++..+.| ..+||++-. +.-  ..++.|.+ ..+|
T Consensus        14 ~L~LfV~g~p~S~~ai~~l~~~le~~~~g~~y~LeVIDv~~qPelaE~~~I-vATPtLIK~~P~P--~q~l~Gs~i~~ql   90 (105)
T d1t4za_          14 LLQLFVDTRPLSQHIVQRVKNILAAVEATVPISLQVINVADQPQLVEYYRL-VVTPALVKIGPGS--RQVLSGIDLTDQL   90 (105)
T ss_dssp             EEEEEECSCHHHHHHHHHHHHHHTTTCCSSCEEEEEEETTTCHHHHHHTTC-CSSSEEEEEESSC--CEEEESSCHHHHH
T ss_pred             EEEEEEcCCcchHHHHHHHHHHHHHhcCCCceEEEEeecccCHhHHhhCCE-EeccHhhhcCCCc--ceeecChhHHHHH
Confidence            44455554577777666677776654 34  78889999999999999999 999998744 443  34456875 6777


Q ss_pred             HHHHHH
Q 031271          154 QMKTEK  159 (162)
Q Consensus       154 ~~~l~~  159 (162)
                      ..|.-+
T Consensus        91 ~~w~pr   96 (105)
T d1t4za_          91 ANQLPQ   96 (105)
T ss_dssp             HHHHHH
T ss_pred             hhhhhH
Confidence            777654

>d1hyua3 c.47.1.2 (A:1-102) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=92.97  E-value=0.31  Score=30.30  Aligned_cols=71  Identities=15%  Similarity=0.124  Sum_probs=48.4

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCCCccEEEEEcCCeEE-EEEcCC-CHHHHHHH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEI-DRVVGA-KKDELQMK  156 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~Gk~i-~~~~g~-~~~~l~~~  156 (162)
                      .+..+...|..|..+...+++++..-+.+.+..-          ..+. ...|++.+.++|+.. -++.|. .-.++-.+
T Consensus        22 ~l~~~~~~~~~s~el~~~l~eva~lSdkI~~~~~----------~~~~-~r~Ps~~i~~~g~~~gI~F~GiP~GhEF~Sl   90 (102)
T d1hyua3          22 ELIATLDDSAKSAEIKELLAEIAELSDKVTFKED----------NTLP-VRKPSFLITNPGSQQGPRFAGSPLGHEFTSL   90 (102)
T ss_dssp             EEEEECCSSHHHHHHHHHHHHHHTTCTTEEEEEC----------TTSS-SCSSEEEEECTTCCCSCEEESCCCGGGHHHH
T ss_pred             EEEEEeCCChhHHHHHHHHHHHHhhCCCeEEEEc----------CCCC-CCCCeEEEecCCCEeeeEEecCCCcccHHHH
Confidence            6667788999999999999999886655666531          2233 567999888777542 355676 55555555


Q ss_pred             HHHH
Q 031271          157 TEKR  160 (162)
Q Consensus       157 l~~~  160 (162)
                      |...
T Consensus        91 ilai   94 (102)
T d1hyua3          91 VLAL   94 (102)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5443

>d1tp9a1 c.47.1.10 (A:1-162) Plant peroxiredoxin {Western balsam poplar(Populus trichocarpa) [TaxId: 3694]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Plant peroxiredoxin
species: Western balsam poplar(Populus trichocarpa) [TaxId: 3694]

Probab=92.31  E-value=0.11  Score=34.72  Aligned_cols=62  Identities=16%  Similarity=0.120  Sum_probs=36.9

Q ss_pred             eeccccceeEEe----cCCCeeee----eCceEEEEEe-cCCChhhh-hhhHHHHHHHHhc---CCcEEEEEECC
Q 031271           54 LIYCINEMVLNI----NDGGNVVF----WVLKVVIYYT-AAWCGPCK-FIEPYVKDFAAMY---TDVQFIKIDVD  115 (162)
Q Consensus        54 ~~~~~~~~~~~~----~~~~~~~~----~~k~vvv~F~-a~wC~~C~-~~~~~l~~~~~~~---~~v~f~~vd~d  115 (162)
                      ..+..|++++..    .+++.+..    .+|+|||+|| ..|++.|- +..+.+....+.+   ....++.+.++
T Consensus         6 vGd~~Pdf~l~~~~~~~~~~~~~l~d~~~gk~vVl~f~P~afT~~Ct~e~~~~~~~~~d~~~~~g~~~v~~isvd   80 (162)
T d1tp9a1           6 VGDVLPDGKLAYFDEQDQLQEVSVHSLVAGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKSKGVTEILCISVN   80 (162)
T ss_dssp             TTCBCCCCEEEEECTTSCEEEEESHHHHTTSEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred             CCCCCCCeEEEeecCCCCceEEEHHHHhCCCeEEEEEEecccchhhhhhcchHHHHhhhHHHHcCCcceeeeecc
Confidence            344577887752    22334433    3488888888 88999994 6666665544422   23445555543

>d1abaa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Bacteriophage T4 [TaxId: 10665]

Probab=91.26  E-value=0.033  Score=33.71  Aligned_cols=50  Identities=20%  Similarity=0.199  Sum_probs=32.9

Q ss_pred             CChhhhhhhHHHHHHHHhcCCcEEEEEECCCc-----H----HHHHh-----cCCCCCccEEEEEcCCeEE
Q 031271           86 WCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWL-----P----EAAKA-----FDLIDVLPTFVLVKRGKEI  142 (162)
Q Consensus        86 wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~-----~----~l~~~-----~~i~~~~Ptiv~~~~Gk~i  142 (162)
                      .|++|.++...|.+.     ++.|..++++..     .    ++.++     .+. ..+|.+++ .||+.|
T Consensus        13 ~C~~C~~AK~lL~~~-----~i~y~~~~i~~~~~~~~~~~~~e~~~~~~~~~~~~-~TvPqIfi-~dg~~I   76 (87)
T d1abaa_          13 KCGPCDNAKRLLTVK-----KQPFEFINIMPEKGVFDDEKIAELLTKLGRDTQIG-LTMPQVFA-PDGSHI   76 (87)
T ss_dssp             CCHHHHHHHHHHHHT-----TCCEEEEESCSBTTBCCHHHHHHHHHHHTCSCCTT-CCSCEEEC-TTSCEE
T ss_pred             CChhHHHHHHHHHHc-----CCCceeccccccccccCHHHHHHHHHHhcccCCCC-ceeCeEEe-cCCcEE
Confidence            599999998877764     677777776532     1    22333     356 78998843 467655

>d1r5aa2 c.47.1.5 (A:2-86) Class delta GST {Mosquito (Anopheles dirus b), isozyme 1-5 [TaxId: 123217]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class delta GST
species: Mosquito (Anopheles dirus b), isozyme 1-5 [TaxId: 123217]

Probab=89.32  E-value=0.92  Score=26.67  Aligned_cols=59  Identities=14%  Similarity=0.229  Sum_probs=40.3

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCC----cHHHHHhcCCCCCccEEEEEcCCeEEE
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDW----LPEAAKAFDLIDVLPTFVLVKRGKEID  143 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~----~~~l~~~~~i~~~~Ptiv~~~~Gk~i~  143 (162)
                      ++.|+.+.|++|++..=.+++..-   .+.+..||...    .+++.+..-. ..+|++.  .+|..+.
T Consensus         2 ~iLY~~~~S~~~~~v~~~l~e~gi---~~e~~~v~~~~~~~~~~~~~~~nP~-g~vP~L~--~~~~~l~   64 (85)
T d1r5aa2           2 TVLYYLPASPPCRSVLLLAKMIGV---ELDLKVLNIMEGEQLKPDFVELNPQ-HCIPTMD--DHGLVLW   64 (85)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHTTC---CEEEEECCTTTTGGGSHHHHTTCTT-CCSSEEE--ETTEEEE
T ss_pred             EEEEcCCCCHhHHHHHHHHHHcCC---CCEEEEecCCCcccCCHHHHHHHhc-CCCCEEE--Eccccee
Confidence            678999999999998766655321   36667777643    3455555556 8899876  5776554

>d1r5pa_ c.47.1.15 (A:) Circadian oscillation regulator KaiB {Cyanobacterium (Nostoc sp.) pcc 7120 [TaxId: 1180]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: KaiB-like
domain: Circadian oscillation regulator KaiB
species: Cyanobacterium (Nostoc sp.) pcc 7120 [TaxId: 1180]

Probab=86.99  E-value=0.07  Score=32.67  Aligned_cols=55  Identities=18%  Similarity=0.070  Sum_probs=46.1

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhc-CC-cEEEEEECCCcHHHHHhcCCCCCccEEE
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMY-TD-VQFIKIDVDWLPEAAKAFDLIDVLPTFV  134 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~-~~-v~f~~vd~d~~~~l~~~~~i~~~~Ptiv  134 (162)
                      +-.|-+..-+.+.+....+.++-+.+ ++ +..-.||+.++|+++..++| ..+||++
T Consensus         4 L~LyVaG~tp~S~~ai~nl~~i~e~~l~~~y~LeVIDv~~qP~lAe~~~I-vATPtLv   60 (90)
T d1r5pa_           4 LKLYVAGNTPNSVRALKTLKNILEQEFQGIYALKVIDVLKNPQLAEEDKI-LATPTLS   60 (90)
T ss_dssp             EEEEESSCCHHHHHHHHHHHHHHHHHHTTSEEEEEEETTTSCSCCTTCCE-ECHHHHG
T ss_pred             EEEEEcCCChhHHHHHHHHHHHHHHhcCCcEEEEEEEcccCHhHHhhCCE-EeehHHH
Confidence            55677878899998888888887655 44 88889999999999999999 9999864

>d1xg8a_ c.47.1.17 (A:) Hypothetical protein SA0798 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: YuzD-like
domain: Hypothetical protein SA0798
species: Staphylococcus aureus [TaxId: 1280]

Probab=84.29  E-value=3.1  Score=25.66  Aligned_cols=78  Identities=14%  Similarity=0.270  Sum_probs=52.2

Q ss_pred             EEEEecC-CChhhhhh------hHHH-HHHHHhcCC--cEEEEEECCCcH--------HHHHhc--CCCCCccEEEEEcC
Q 031271           79 VIYYTAA-WCGPCKFI------EPYV-KDFAAMYTD--VQFIKIDVDWLP--------EAAKAF--DLIDVLPTFVLVKR  138 (162)
Q Consensus        79 vv~F~a~-wC~~C~~~------~~~l-~~~~~~~~~--v~f~~vd~d~~~--------~l~~~~--~i~~~~Ptiv~~~~  138 (162)
                      +..|.|. -|+.|..+      ...| ..+.++||+  +.|..||+...+        +++.+.  .- -.+|.+++  +
T Consensus        10 i~VYGA~~iCASCV~aPSSkeTyEWLqaal~RKyp~~~f~~~YiDi~~~~~~~~~~~~~~ae~I~ede-~FYPlV~i--~   86 (111)
T d1xg8a_          10 VVVYGADVICASCVNAPTSKDIYDWLQPLLKRKYPNISFKYTYIDITKDNDNLTDHDLQFIERIEQDE-LFYPLITM--N   86 (111)
T ss_dssp             EEEEECSSCCGGGSSSCCHHHHHHHHHHHHHHHCTTSCEEEEEEETTTC---CCHHHHHHHHHHHTTS-SCSSEEEE--T
T ss_pred             EEEEcccccchhhcCCCCchhHHHHHHHHHhCcCCCCceEEEEEeccCCcccccHHHHHHHHHHhhcc-ceeeEEEE--C
Confidence            4444444 89999865      2233 345678997  889999996443        244433  23 47787765  8


Q ss_pred             CeEEEEEcCC-CHHHHHHHHHHHh
Q 031271          139 GKEIDRVVGA-KKDELQMKTEKRR  161 (162)
Q Consensus       139 Gk~i~~~~g~-~~~~l~~~l~~~~  161 (162)
                      |+++.  .|. ..+.+-+.+++++
T Consensus        87 ~eiVa--EGnp~LK~I~~~ie~~~  108 (111)
T d1xg8a_          87 DEYVA--DGYIQTKQITRFIDQKL  108 (111)
T ss_dssp             TEEEE--ESSCCHHHHHHHHHHHH
T ss_pred             CEEee--cCCccHHHHHHHHHHHh
Confidence            88886  376 7888888888875

>d1eema2 c.47.1.5 (A:5-102) Class omega GST {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class omega GST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.46  E-value=2.3  Score=25.54  Aligned_cols=72  Identities=14%  Similarity=0.139  Sum_probs=45.6

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCCcH-HHHHhcCCCCCccEEEEEcCCeEEEEEcCCCHHHHHHHH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLP-EAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQMKT  157 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~~~-~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~~~~~l~~~l  157 (162)
                      +-.|..++|++|++.+=.++...-   .+..+.+|....+ ++.+.... ..+|+++. .+|..+.     +...+..+|
T Consensus        20 ~~Ly~~~~sP~~~rv~~~l~~kgi---~~e~~~v~~~~~~~~~~~~nP~-g~VPvL~~-~dg~~i~-----eS~aI~~YL   89 (98)
T d1eema2          20 IRIYSMRFCPFAERTRLVLKAKGI---RHEVININLKNKPEWFFKKNPF-GLVPVLEN-SQGQLIY-----ESAITCEYL   89 (98)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHTTC---CEEEEEBCTTSCCGGGGGTCTT-CCSCEEEE-TTCCEEE-----SHHHHHHHH
T ss_pred             EEEEcCCCChHHHHHHHHHHHhCC---CCEEEEecccCCcHHHHhhhcc-ccceeEEe-CCCCEEc-----CHHHHHHHH
Confidence            455788999999988766655211   2555666665433 45555556 89999864 5676553     355566776


Q ss_pred             HHH
Q 031271          158 EKR  160 (162)
Q Consensus       158 ~~~  160 (162)
                      ++.
T Consensus        90 ~e~   92 (98)
T d1eema2          90 DEA   92 (98)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

>d1z9ha2 c.47.1.5 (A:100-212) Microsomal prostaglandin E synthase-2 {Crab-eating macaque (Macaca fascicularis) [TaxId: 9541]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Microsomal prostaglandin E synthase-2
species: Crab-eating macaque (Macaca fascicularis) [TaxId: 9541]

Probab=82.54  E-value=3.7  Score=25.12  Aligned_cols=70  Identities=10%  Similarity=0.221  Sum_probs=41.3

Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHhcCCcEE--EEEECCCcHHHHHhcCCCCCccEEEEEcC--CeEEEEEcCCCHHHHH
Q 031271           79 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQF--IKIDVDWLPEAAKAFDLIDVLPTFVLVKR--GKEIDRVVGAKKDELQ  154 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l~~~~~~~~~v~f--~~vd~d~~~~l~~~~~i~~~~Ptiv~~~~--Gk~i~~~~g~~~~~l~  154 (162)
                      +..|..++||+|++++-.|+.     .++.+  +.++......+ ..-+. ..+|+++.-.+  |+.+     .....+.
T Consensus         3 i~LY~~~~sP~~~kvr~~L~~-----k~l~~~~~~v~~~~~~~~-~~~~~-~~vP~l~~~~~~~g~~i-----~eS~~Ii   70 (113)
T d1z9ha2           3 LTLYQYKTCPFCSKVRAFLDF-----HALPYQVVEVNPVLRAEI-KFSSY-RKVPILVAQEGESSQQL-----NDSSVII   70 (113)
T ss_dssp             EEEEECTTCHHHHHHHHHHHH-----TTCCEEEEECCTTTCGGG-TTCSC-CSSCEEEEEETTEEEEE-----CSHHHHH
T ss_pred             EEEEcCCCChHHHHHHHHHHH-----cCCeeEEeccCcccchhh-ccCcc-ccccccccccCCCceEe-----ecHHHHH
Confidence            556778999999999877766     35444  44444444332 34456 78998655432  2322     2345555


Q ss_pred             HHHHHH
Q 031271          155 MKTEKR  160 (162)
Q Consensus       155 ~~l~~~  160 (162)
                      +.|++.
T Consensus        71 ~YL~~~   76 (113)
T d1z9ha2          71 SALKTY   76 (113)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            656543

>d1s3aa1 c.47.1.22 (A:15-99) NADH-ubiquinone oxidoreductase b8 subunit, CI-B8 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Mitochondrial ribosomal protein L51/S25/CI-B8 domain
domain: NADH-ubiquinone oxidoreductase b8 subunit, CI-B8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.24  E-value=3.6  Score=24.10  Aligned_cols=71  Identities=11%  Similarity=0.125  Sum_probs=50.3

Q ss_pred             EEEEecCCChhhhhhhHHH----HHHHHhcCCcEEEEEECCCcHHHHHhcCCCCCccEEEE-EcCCeEEEEEcC-CCHHH
Q 031271           79 VIYYTAAWCGPCKFIEPYV----KDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVL-VKRGKEIDRVVG-AKKDE  152 (162)
Q Consensus        79 vv~F~a~wC~~C~~~~~~l----~~~~~~~~~v~f~~vd~d~~~~l~~~~~i~~~~Ptiv~-~~~Gk~i~~~~g-~~~~~  152 (162)
                      |...|..|++.++.++..+    .+++...|++.|+.--   .        - ...|.+.. |.+|+...--.. .+.++
T Consensus         5 l~~~yc~~~~sS~G~R~Fi~~~l~~~~~~NP~v~i~v~~---~--------~-~~~P~l~a~y~nG~e~~i~l~n~~~~e   72 (85)
T d1s3aa1           5 IRIHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILIRE---C--------S-DVQPKLWARYAFGQETNVPLNNFSADQ   72 (85)
T ss_dssp             EEEECCSSSCCCHHHHHHHHHTHHHHHHHSTTCCEEEEC---C--------C-SSSCEEEEEESSCCEEEEECTTCCHHH
T ss_pred             EEEEEcCCCCCcHHHHHHHHHhHHHHHHHCCCceEEEEE---c--------C-CCCCEEEEEEcCCcEEEEECCCCCHHH
Confidence            5667888999988887765    6677788887776531   1        1 34687554 588877655444 49999


Q ss_pred             HHHHHHHHh
Q 031271          153 LQMKTEKRR  161 (162)
Q Consensus       153 l~~~l~~~~  161 (162)
                      +.+.|+.++
T Consensus        73 I~~~l~~L~   81 (85)
T d1s3aa1          73 VTRALENVL   81 (85)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998764

>d1un2a_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=80.71  E-value=1.1  Score=30.73  Aligned_cols=29  Identities=24%  Similarity=0.237  Sum_probs=21.9

Q ss_pred             CcHHHHHhcCCCCCccEEEEEcCCeEEEEEcC
Q 031271          116 WLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVG  147 (162)
Q Consensus       116 ~~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g  147 (162)
                      +...+++++|| .++|++++  ||+.+-...+
T Consensus        38 ~~~~~a~~~gi-~GtPtfiV--nGky~v~~~~   66 (195)
T d1un2a_          38 QQEKAAADVQL-RGVPAMFV--NGKYQLNPQG   66 (195)
T ss_dssp             HHHHHHHHTTC-CSSSEEEE--TTTEEECGGG
T ss_pred             HHHHHHHHhCC-CcCCEEEE--CCeeeecccc
Confidence            34568899999 99999877  8986654333

>d1v2aa2 c.47.1.5 (A:1-83) Class delta GST {Mosquito (Anopheles dirus b), isozyme 1-6 [TaxId: 123217]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class delta GST
species: Mosquito (Anopheles dirus b), isozyme 1-6 [TaxId: 123217]

Probab=80.01  E-value=3.7  Score=23.56  Aligned_cols=68  Identities=18%  Similarity=0.237  Sum_probs=42.5

Q ss_pred             EEecCCChhhhhhhHHHHHHHHhcCCcEEEEEECCC---cHHHHHhcCCCCCccEEEEEcCCeEEEEEcCCCHHHHHHHH
Q 031271           81 YYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDW---LPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQMKT  157 (162)
Q Consensus        81 ~F~a~wC~~C~~~~~~l~~~~~~~~~v~f~~vd~d~---~~~l~~~~~i~~~~Ptiv~~~~Gk~i~~~~g~~~~~l~~~l  157 (162)
                      .|+.+.|++|++..=.++...-   .+.+..||...   ..++.+.... ..+|+++  .+|..+.     ....+...|
T Consensus         3 LY~~~~Sp~~~~v~~~l~~~gi---~~e~~~v~~~~~~~~~~~~~~nP~-g~VP~L~--~~g~~l~-----eS~aI~~YL   71 (83)
T d1v2aa2           3 YYYSLISPPCQSAILLAKKLGI---TLNLKKTNVHDPVERDALTKLNPQ-HTIPTLV--DNGHVVW-----ESYAIVLYL   71 (83)
T ss_dssp             EEECTTCHHHHHHHHHHHHHTC---CCEEEECCTTCHHHHHHHHHHCTT-CCSCEEE--ETTEEEE-----SHHHHHHHH
T ss_pred             EECCCCChHHHHHHHHHHHhCC---CceEEEEeCCCCcchHHHHHHhhc-cCCCEEE--EccceeE-----cHHHHHHHH
Confidence            4778999999997655554311   36666777643   2345555556 7999875  5776654     234455555


Q ss_pred             HH
Q 031271          158 EK  159 (162)
Q Consensus       158 ~~  159 (162)
                      .+
T Consensus        72 ~~   73 (83)
T d1v2aa2          72 VE   73 (83)
T ss_dssp             HH
T ss_pred             HH
Confidence            43