Citrus Sinensis ID: 031274

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160--
MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQAIVFMLKRLFVVQSSSFLVAKKSLSAESGVSPSLAAVII
ccccccccccccccccccccccccccccccEEEEEccccccccccccEEEEEEccccccccHHHHHHHHHHHHHHHHHHHccccEEEEEEEcccEEEEccccccccccccccccccccccccEEEEEEEEEcEEEEcccHHHHHHHHHHHccccccccEEEc
ccccccHHHHHcccccccccccccccccccEEEEEccccccccccccEEEEEEEcHHHHccHHHHHHHHHHHHHHHHHHccccccEEEEEEcccHHHEHHHHHcHccccHHHccccccccccccEEEEEEEEEEEccccHHHHHHHHHHHHHcccccEEEEc
mgrrparcyrqiknkpypksrfcrgvpdpkiriydvgmkkkgvdefpfCVHLVSWEKENVSSEALEAARIACNKYMAKfagkdafhlrvrvhpfHVLRINKMLSCagadrlqtgmrgafgkpQAIVFMLKRLFVVQSSSFLVAKKslsaesgvspsLAAVII
mgrrparcyrqiknkpypksrfcrgvpdpKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQAIVFMLKRLFVVQSSSFLVAkkslsaesgvspslaavii
MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQAIVFMLKRLFVVQSSSFLVAKKSLSAESGVSPSLAAVII
******************KSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQAIVFMLKRLFVVQSSSFLVA*******************
***RPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSC**************GKPQAIVFMLKRLFVVQSSSFLVAKKSLSAESGVSPSLAAVII
MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQAIVFMLKRLFVVQSSSFLVAKKS*********SLAAVII
***RPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQAIVFMLKRLFVVQSSSFLVAKKSLSAESGVSPSLAAVII
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MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQAIVFMLKRLFVVQSSSFLVAKKSLSAESGVSPSLAAVII
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query162 2.2.26 [Sep-21-2011]
Q9M5M7220 60S ribosomal protein L10 N/A no 0.771 0.568 0.976 5e-70
Q9SPB3220 60S ribosomal protein L10 N/A no 0.771 0.568 0.96 5e-69
P93847219 60S ribosomal protein L10 N/A no 0.771 0.570 0.96 5e-69
Q0ITS8224 60S ribosomal protein L10 yes no 0.771 0.558 0.952 8e-69
A2ZCQ7224 60S ribosomal protein L10 N/A no 0.771 0.558 0.952 8e-69
Q0DKF0219 60S ribosomal protein L10 no no 0.771 0.570 0.936 9e-67
A2Y0T4219 60S ribosomal protein L10 N/A no 0.771 0.570 0.936 9e-67
P45633220 60S ribosomal protein L10 N/A no 0.771 0.568 0.92 3e-66
Q93W22221 60S ribosomal protein L10 yes no 0.746 0.547 0.950 6e-66
Q93VT9220 60S ribosomal protein L10 yes no 0.746 0.55 0.950 2e-65
>sp|Q9M5M7|RL10_EUPES 60S ribosomal protein L10 OS=Euphorbia esula GN=RPL10 PE=2 SV=1 Back     alignment and function desciption
 Score =  263 bits (671), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 122/125 (97%), Positives = 123/125 (98%)

Query: 1   MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENV 60
           MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENV
Sbjct: 1   MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENV 60

Query: 61  SSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
           SSEALEAARIACNKYM KFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG
Sbjct: 61  SSEALEAARIACNKYMTKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120

Query: 121 KPQAI 125
           KPQ +
Sbjct: 121 KPQGV 125

Euphorbia esula (taxid: 3993)
>sp|Q9SPB3|RL10_VITRI 60S ribosomal protein L10 OS=Vitis riparia GN=RPL10 PE=2 SV=1 Back     alignment and function description
>sp|P93847|RL10_SOLME 60S ribosomal protein L10 OS=Solanum melongena GN=RPL10 PE=2 SV=1 Back     alignment and function description
>sp|Q0ITS8|RL101_ORYSJ 60S ribosomal protein L10-1 OS=Oryza sativa subsp. japonica GN=SC34 PE=2 SV=1 Back     alignment and function description
>sp|A2ZCQ7|RL101_ORYSI 60S ribosomal protein L10-1 OS=Oryza sativa subsp. indica GN=SC34 PE=2 SV=2 Back     alignment and function description
>sp|Q0DKF0|RL102_ORYSJ 60S ribosomal protein L10-2 OS=Oryza sativa subsp. japonica GN=SG12 PE=2 SV=1 Back     alignment and function description
>sp|A2Y0T4|RL102_ORYSI 60S ribosomal protein L10-2 OS=Oryza sativa subsp. indica GN=SG12 PE=2 SV=2 Back     alignment and function description
>sp|P45633|RL10_MAIZE 60S ribosomal protein L10 OS=Zea mays GN=RPL10 PE=2 SV=1 Back     alignment and function description
>sp|Q93W22|RL103_ARATH 60S ribosomal protein L10-3 OS=Arabidopsis thaliana GN=RPL10C PE=2 SV=1 Back     alignment and function description
>sp|Q93VT9|RL101_ARATH 60S ribosomal protein L10-1 OS=Arabidopsis thaliana GN=RPL10A PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query162
356509104223 PREDICTED: 60S ribosomal protein L10-lik 0.771 0.560 0.984 9e-69
388501178223 unknown [Lotus japonicus] 0.771 0.560 0.984 1e-68
449447509219 PREDICTED: 60S ribosomal protein L10-lik 0.771 0.570 0.984 1e-68
351723535222 uncharacterized protein LOC100305619 [Gl 0.771 0.563 0.984 1e-68
449459224220 PREDICTED: 60S ribosomal protein L10-lik 0.771 0.568 0.984 2e-68
313586525220 60S ribosomal protein L10B [Hevea brasil 0.771 0.568 0.984 2e-68
358343356223 60S ribosomal protein L10 [Medicago trun 0.771 0.560 0.976 2e-68
255626849230 unknown [Glycine max] 0.771 0.543 0.984 2e-68
356500803222 PREDICTED: 60S ribosomal protein L10-lik 0.771 0.563 0.984 2e-68
351724285223 uncharacterized protein LOC100499685 [Gl 0.771 0.560 0.976 2e-68
>gi|356509104|ref|XP_003523292.1| PREDICTED: 60S ribosomal protein L10-like [Glycine max] Back     alignment and taxonomy information
 Score =  264 bits (675), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 123/125 (98%), Positives = 123/125 (98%)

Query: 1   MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENV 60
           MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENV
Sbjct: 1   MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENV 60

Query: 61  SSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
           SSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG
Sbjct: 61  SSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120

Query: 121 KPQAI 125
           KPQ  
Sbjct: 121 KPQGT 125

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|388501178|gb|AFK38655.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|449447509|ref|XP_004141510.1| PREDICTED: 60S ribosomal protein L10-like [Cucumis sativus] gi|449520435|ref|XP_004167239.1| PREDICTED: 60S ribosomal protein L10-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|351723535|ref|NP_001238050.1| uncharacterized protein LOC100305619 [Glycine max] gi|255626107|gb|ACU13398.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|449459224|ref|XP_004147346.1| PREDICTED: 60S ribosomal protein L10-like [Cucumis sativus] gi|449517467|ref|XP_004165767.1| PREDICTED: 60S ribosomal protein L10-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|313586525|gb|ADR71273.1| 60S ribosomal protein L10B [Hevea brasiliensis] Back     alignment and taxonomy information
>gi|358343356|ref|XP_003635770.1| 60S ribosomal protein L10 [Medicago truncatula] gi|355501705|gb|AES82908.1| 60S ribosomal protein L10 [Medicago truncatula] Back     alignment and taxonomy information
>gi|255626849|gb|ACU13769.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|356500803|ref|XP_003519220.1| PREDICTED: 60S ribosomal protein L10-like [Glycine max] Back     alignment and taxonomy information
>gi|351724285|ref|NP_001238332.1| uncharacterized protein LOC100499685 [Glycine max] gi|255625765|gb|ACU13227.1| unknown [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query162
TAIR|locus:2012612220 SAC52 "SUPPRESSOR OF ACAULIS 5 0.746 0.55 0.950 1.6e-61
TAIR|locus:2195155221 SAG24 "senescence associated g 0.746 0.547 0.950 1.6e-61
TAIR|locus:2202810221 RPL10B "ribosomal protein L10 0.746 0.547 0.942 3.4e-61
FB|FBgn0024733218 RpL10 "Ribosomal protein L10" 0.777 0.577 0.785 3.8e-53
ZFIN|ZDB-GENE-030131-8656215 rpl10 "ribosomal protein L10" 0.777 0.586 0.801 6.3e-53
UNIPROTKB|Q90YV9215 RL10 "60S ribosomal protein l1 0.777 0.586 0.801 1.3e-52
ASPGD|ASPL0000000977221 AN6083 [Emericella nidulans (t 0.777 0.570 0.801 9.2e-52
UNIPROTKB|G8JKX9214 G8JKX9 "Uncharacterized protei 0.777 0.588 0.793 9.2e-52
UNIPROTKB|Q2TBW8214 RPL10L "60S ribosomal protein 0.777 0.588 0.793 9.2e-52
UNIPROTKB|Q9XSI3214 RPL10 "60S ribosomal protein L 0.777 0.588 0.793 9.2e-52
TAIR|locus:2012612 SAC52 "SUPPRESSOR OF ACAULIS 52" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 629 (226.5 bits), Expect = 1.6e-61, P = 1.6e-61
 Identities = 115/121 (95%), Positives = 118/121 (97%)

Query:     1 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENV 60
             MGRRPARCYRQIK KPYPKSR+CRGVPDPKIRIYDVGMK+KGVDEFPFCVHLVSWEKENV
Sbjct:     1 MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60

Query:    61 SSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
             SSEALEAARIACNKYM K AGKDAFHLR+RVHPFHVLRINKMLSCAGADRLQTGMRGAFG
Sbjct:    61 SSEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120

Query:   121 K 121
             K
Sbjct:   121 K 121
GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS
GO:0005622 "intracellular" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0005840 "ribosome" evidence=IEA;IPI
GO:0006412 "translation" evidence=IEA;ISS;TAS
GO:0015934 "large ribosomal subunit" evidence=ISS
GO:0009507 "chloroplast" evidence=IDA
GO:0005773 "vacuole" evidence=IDA
GO:0005730 "nucleolus" evidence=IDA
GO:0022626 "cytosolic ribosome" evidence=IDA
GO:0005774 "vacuolar membrane" evidence=IDA
GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA
GO:0005515 "protein binding" evidence=IPI
GO:0071493 "cellular response to UV-B" evidence=IMP
GO:0005829 "cytosol" evidence=IDA
GO:0005794 "Golgi apparatus" evidence=RCA
GO:0001510 "RNA methylation" evidence=RCA
TAIR|locus:2195155 SAG24 "senescence associated gene 24" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2202810 RPL10B "ribosomal protein L10 B" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
FB|FBgn0024733 RpL10 "Ribosomal protein L10" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-8656 rpl10 "ribosomal protein L10" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q90YV9 RL10 "60S ribosomal protein l10" [Ictalurus punctatus (taxid:7998)] Back     alignment and assigned GO terms
ASPGD|ASPL0000000977 AN6083 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|G8JKX9 G8JKX9 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q2TBW8 RPL10L "60S ribosomal protein L10-like" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q9XSI3 RPL10 "60S ribosomal protein L10" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q09127RL10A_SCHPONo assigned EC number0.74600.77770.5701yesno
Q93VT9RL101_ARATHNo assigned EC number0.95040.74690.55yesno
Q29195RL10_PIGNo assigned EC number0.79360.77770.5887yesno
Q09533RL10_CAEELNo assigned EC number0.78570.77770.5887yesno
O28930RL10_ARCFUNo assigned EC number0.34730.97530.9080yesno
Q6PDV7RL10_RATNo assigned EC number0.79360.77770.5887yesno
A2Y0T4RL102_ORYSINo assigned EC number0.9360.77160.5707N/Ano
Q9XSI3RL10_BOVINNo assigned EC number0.79360.77770.5887yesno
Q8SR96RL10_ENCCUNo assigned EC number0.73770.75300.5570yesno
P86048RL10L_MOUSENo assigned EC number0.79360.77770.5887yesno
Q93W22RL103_ARATHNo assigned EC number0.95040.74690.5475yesno
O61231RL10_DROMENo assigned EC number0.78570.77770.5779yesno
A2ZCQ7RL101_ORYSINo assigned EC number0.9520.77160.5580N/Ano
Q96L21RL10L_HUMANNo assigned EC number0.77770.77770.5887yesno
Q6ZWV3RL10_MOUSENo assigned EC number0.79360.77770.5887yesno
Q9SPB3RL10_VITRINo assigned EC number0.960.77160.5681N/Ano
Q12W43RL10_METBUNo assigned EC number0.34730.98140.9244yesno
Q9M5M7RL10_EUPESNo assigned EC number0.9760.77160.5681N/Ano
Q08200RL10_CHICKNo assigned EC number0.79160.74070.5714yesno
P45633RL10_MAIZENo assigned EC number0.920.77160.5681N/Ano
Q9P769RL10B_SCHPONo assigned EC number0.74600.77770.5701yesno
Q8PWV0RL10_METMANo assigned EC number0.37120.98760.9248yesno
P41805RL10_YEASTNo assigned EC number0.7760.77160.5656yesno
Q54J69RL10_DICDINo assigned EC number0.76980.77770.5806yesno
Q08770RL102_ARATHNo assigned EC number0.94210.74690.5475yesno
P27635RL10_HUMANNo assigned EC number0.79360.77770.5887yesno
P93847RL10_SOLMENo assigned EC number0.960.77160.5707N/Ano
Q0ITS8RL101_ORYSJNo assigned EC number0.9520.77160.5580yesno
Q2TBW8RL10L_BOVINNo assigned EC number0.79360.77770.5887yesno
O22431RL10_PINTANo assigned EC number0.9120.77160.5482N/Ano
Q5R931RL10_PONABNo assigned EC number0.79360.77770.5887yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query162
PTZ00173213 PTZ00173, PTZ00173, 60S ribosomal protein L10; Pro 5e-93
TIGR00279172 TIGR00279, L10e, ribosomal protein L10 6e-59
PRK04199172 PRK04199, rpl10e, 50S ribosomal protein L10e; Revi 1e-47
cd01433112 cd01433, Ribosomal_L16_L10e, Ribosomal_L16_L10e: L 8e-24
COG0197146 COG0197, RplP, Ribosomal protein L16/L10E [Transla 3e-23
pfam00252129 pfam00252, Ribosomal_L16, Ribosomal protein L16p/L 5e-15
>gnl|CDD|185498 PTZ00173, PTZ00173, 60S ribosomal protein L10; Provisional Back     alignment and domain information 
 Score =  268 bits (687), Expect = 5e-93
 Identities = 104/126 (82%), Positives = 109/126 (86%)

Query: 1   MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENV 60
           MGRRPARCYR  KNKPYPKSRFCRGVPDPKIRIYD+G KK  VDEFP CVH+VS E E +
Sbjct: 1   MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIYDIGRKKATVDEFPVCVHIVSDEYEQI 60

Query: 61  SSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
           SSEALEAARI+ NKYM K AGKD FHLR+RVHPFHVLRINKMLSCAGADRLQTGMRGAFG
Sbjct: 61  SSEALEAARISANKYMVKRAGKDGFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120

Query: 121 KPQAIV 126
           KP    
Sbjct: 121 KPNGTC 126

Length = 213
>gnl|CDD|129380 TIGR00279, L10e, ribosomal protein L10 Back     alignment and domain information
>gnl|CDD|235252 PRK04199, rpl10e, 50S ribosomal protein L10e; Reviewed Back     alignment and domain information
>gnl|CDD|238714 cd01433, Ribosomal_L16_L10e, Ribosomal_L16_L10e: L16 is an essential protein in the large ribosomal subunit of bacteria, mitochondria, and chloroplasts Back     alignment and domain information
>gnl|CDD|223275 COG0197, RplP, Ribosomal protein L16/L10E [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|215820 pfam00252, Ribosomal_L16, Ribosomal protein L16p/L10e Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 162
PTZ00173213 60S ribosomal protein L10; Provisional 100.0
TIGR00279172 L10e ribosomal protein L10.e. L10.e is distantly r 100.0
PRK04199172 rpl10e 50S ribosomal protein L10e; Reviewed 100.0
KOG0857212 consensus 60s ribosomal protein L10 [Translation, 100.0
COG0197146 RplP Ribosomal protein L16/L10E [Translation, ribo 100.0
PF00252133 Ribosomal_L16: Ribosomal protein L16p/L10e; InterP 100.0
cd01433112 Ribosomal_L16_L10e Ribosomal_L16_L10e: L16 is an e 100.0
TIGR01164126 rplP_bact ribosomal protein L16, bacterial/organel 100.0
PRK09203138 rplP 50S ribosomal protein L16; Reviewed 99.97
CHL00044135 rpl16 ribosomal protein L16 99.97
KOG3422221 consensus Mitochondrial ribosomal protein L16 [Tra 99.76
>PTZ00173 60S ribosomal protein L10; Provisional Back     alignment and domain information 
Probab=100.00  E-value=3.2e-80  Score=514.14  Aligned_cols=159  Identities=68%  Similarity=1.051  Sum_probs=155.7

Q ss_pred             CCCCccccccccCCCCCCCCCCcCCCCCCceeEEecCCCCCCCCCCCeEEEEEecCccccchhHHHHHHHHHhhhhHHhh
Q 031274            1 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFA   80 (162)
Q Consensus         1 M~~rPa~cYr~~~~~pY~r~~y~~GvP~~KI~~fd~G~~~a~~~~fp~~~~Lvs~E~~qIss~aLEAARiaankyl~k~~   80 (162)
                      ||||||||||+++|||||||+||+||||+||++|||||+++++||||+|+||+|+|.+||||+||||||+|+||||.|++
T Consensus         1 M~~rParcYr~~~~~pY~r~~y~~gvP~~kI~~fd~G~~~a~~~~fp~~v~Lvs~E~~qIss~aLEAaRia~nr~l~K~~   80 (213)
T PTZ00173          1 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIYDIGRKKATVDEFPVCVHIVSDEYEQISSEALEAARISANKYMVKRA   80 (213)
T ss_pred             CCCCchhhhhcccCCCCchhhccCCCCCCcEEEEecCCCcCCcccCCeEEEEEEcccccccHHHHHHHHHHHHHhhhhhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999998889


Q ss_pred             CCcceeEEEEecCCceeeecccccccchhhhhccccCcCCCcceEEEEEeeceEEEe-----cCHHHHHHHHHHhhcCCC
Q 031274           81 GKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQAIVFMLKRLFVVQS-----SSFLVAKKSLSAESGVSP  155 (162)
Q Consensus        81 Gk~~f~l~Irv~P~hvlr~nkmls~AGADRlq~gMr~afGkp~g~vArV~~g~~i~~-----~~~~~AkeALr~a~~klp  155 (162)
                      |+++||+|||+|||||||||||||||||||||+|||+|||+|+||||||++||+||+     ++++.|+|||++|++|||
T Consensus        81 Gk~~fhl~IRv~P~hvlR~nKm~T~AgAdrlq~gMr~gfGkp~g~vArVk~Gqiifei~~~~~~~~~AkeALrrA~~KlP  160 (213)
T PTZ00173         81 GKDGFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPNGTCARVRIGQILLSIRTKEAYVPQAIEALRRAKYKFP  160 (213)
T ss_pred             CCccceEEEEEcCCcccccccccccccCchhhhhcccCCCCccEEEEEECcCCEEEEEecccCCHHHHHHHHHHhcccCC
Confidence            999999999999999999999999999999999999999999999999999999997     799999999999999999


Q ss_pred             ccee
Q 031274          156 SLAA  159 (162)
Q Consensus       156 ~~~~  159 (162)
                      +=.-
T Consensus       161 ~~~k  164 (213)
T PTZ00173        161 GRQK  164 (213)
T ss_pred             CeEE
Confidence            8543

>TIGR00279 L10e ribosomal protein L10 Back     alignment and domain information
>PRK04199 rpl10e 50S ribosomal protein L10e; Reviewed Back     alignment and domain information
>KOG0857 consensus 60s ribosomal protein L10 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG0197 RplP Ribosomal protein L16/L10E [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF00252 Ribosomal_L16: Ribosomal protein L16p/L10e; InterPro: IPR016180 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>cd01433 Ribosomal_L16_L10e Ribosomal_L16_L10e: L16 is an essential protein in the large ribosomal subunit of bacteria, mitochondria, and chloroplasts Back     alignment and domain information
>TIGR01164 rplP_bact ribosomal protein L16, bacterial/organelle Back     alignment and domain information
>PRK09203 rplP 50S ribosomal protein L16; Reviewed Back     alignment and domain information
>CHL00044 rpl16 ribosomal protein L16 Back     alignment and domain information
>KOG3422 consensus Mitochondrial ribosomal protein L16 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query162
3izr_I224 Localization Of The Large Subunit Ribosomal Protein 7e-70
2zkr_h214 Structure Of A Mammalian Ribosomal 60s Subunit With 9e-56
1s1i_I168 Structure Of The Ribosomal 80s-Eef2-Sordarin Comple 3e-54
3izs_I221 Localization Of The Large Subunit Ribosomal Protein 3e-54
3j0l_J219 Core Of Mammalian 80s Pre-Ribosome In Complex With 2e-53
3jyw_I165 Structure Of The 60s Proteins For Eukaryotic Riboso 6e-53
3zf7_K213 High-resolution Cryo-electron Microscopy Structure 2e-52
4a17_H215 T.Thermophila 60s Ribosomal Subunit In Complex With 2e-52
2pa2_A151 Crystal Structure Of Human Ribosomal Protein L10 Co 4e-37
3j21_N181 Promiscuous Behavior Of Proteins In Archaeal Riboso 2e-21
1yhq_H177 Crystal Structure Of Azithromycin Bound To The G209 6e-19
2qex_H174 Negamycin Binds To The Wall Of The Nascent Chain Ex 6e-19
3i55_H174 Co-Crystal Structure Of Mycalamide A Bound To The L 6e-19
1s72_H171 Refined Crystal Structure Of The Haloarcula Marismo 2e-18
1jj2_H167 Fully Refined Crystal Structure Of The Haloarcula M 8e-14
1ffk_F157 Crystal Structure Of The Large Ribosomal Subunit Fr 4e-06
1giy_P138 Crystal Structure Of The Ribosome At 5.5 A Resoluti 2e-04
>pdb|3IZR|I Chain I, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 224 Back     alignment and structure 
Iteration: 1

 Score =  258 bits (660), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 119/125 (95%), Positives = 121/125 (96%)
Query: 1   MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENV 60
           MGRRPARCYRQIKNKPYPKSR+CRGVPDPKIRIYDVGMKKKGVDEFP+CVHLVSWEKENV
Sbjct: 1   MGRRPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFPYCVHLVSWEKENV 60
Query: 61  SSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
           SSEALEAARIACNKYM K AGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG
Sbjct: 61  SSEALEAARIACNKYMTKNAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
Query: 121 KPQAI 125
           KPQ  
Sbjct: 121 KPQGT 125
>pdb|2ZKR|HH Chain h, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 214 Back     alignment and structure
>pdb|1S1I|I Chain I, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is In File 1s1h Length = 168 Back     alignment and structure
>pdb|3IZS|I Chain I, Localization Of The Large Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 221 Back     alignment and structure
>pdb|3J0L|J Chain J, Core Of Mammalian 80s Pre-Ribosome In Complex With Trnas Fitted To A 9.8a Cryo-Em Map: Classic Pre State 1 Length = 219 Back     alignment and structure
>pdb|3JYW|I Chain I, Structure Of The 60s Proteins For Eukaryotic Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 165 Back     alignment and structure
>pdb|3ZF7|K Chain K, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 213 Back     alignment and structure
>pdb|4A17|H Chain H, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 5s Rrna, 5.8s Rrna And Proteins Of Molecule 2. Length = 215 Back     alignment and structure
>pdb|2PA2|A Chain A, Crystal Structure Of Human Ribosomal Protein L10 Core Domain Length = 151 Back     alignment and structure
>pdb|3J21|N Chain N, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (50s Ribosomal Proteins) Length = 181 Back     alignment and structure
>pdb|1YHQ|H Chain H, Crystal Structure Of Azithromycin Bound To The G2099a Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui Length = 177 Back     alignment and structure
>pdb|2QEX|H Chain H, Negamycin Binds To The Wall Of The Nascent Chain Exit Tunnel Of The 50s Ribosomal Subunit Length = 174 Back     alignment and structure
>pdb|3I55|H Chain H, Co-Crystal Structure Of Mycalamide A Bound To The Large Ribosomal Subunit Length = 174 Back     alignment and structure
>pdb|1S72|H Chain H, Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution Length = 171 Back     alignment and structure
>pdb|1JJ2|H Chain H, Fully Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution Length = 167 Back     alignment and structure
>pdb|1FFK|F Chain F, Crystal Structure Of The Large Ribosomal Subunit From Haloarcula Marismortui At 2.4 Angstrom Resolution Length = 157 Back     alignment and structure
>pdb|1GIY|P Chain P, Crystal Structure Of The Ribosome At 5.5 A Resolution. This File, 1giy, Contains The 50s Ribosome Subunit. The 30s Ribosome Subunit, Three Trna, And Mrna Molecules Are In The File 1gix Length = 138 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query162
4a17_H215 RPL10, 60S ribosomal protein L10; eukaryotic ribos 3e-58
2zkr_h214 60S ribosomal protein L10; protein-RNA complex, 60 3e-58
3iz5_I224 60S ribosomal protein L10 (L10E); eukaryotic ribos 1e-56
1vq8_H171 50S ribosomal protein L10E; ribosome 50S, protein- 5e-56
3j0l_J219 Ribosomal protein L10; mammalia, translation, elon 2e-55
1ffk_F157 Ribosomal protein L10E; ribosome assembly, RNA-RNA 9e-48
2pa2_A151 60S ribosomal protein L10; QM protein, , structura 1e-39
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-04
>4a17_H RPL10, 60S ribosomal protein L10; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_H 4a1c_H 4a1e_H Length = 215 Back     alignment and structure
 Score =  179 bits (456), Expect = 3e-58
 Identities = 94/131 (71%), Positives = 105/131 (80%)

Query: 1   MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENV 60
           MGRRPARCYRQ K KPYPKSR+ RGVPD +IRIYD G KK  V+EFP+ VH+VS EKE +
Sbjct: 1   MGRRPARCYRQPKGKPYPKSRYNRGVPDARIRIYDSGRKKATVEEFPYVVHIVSDEKEQI 60

Query: 61  SSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
           +SEALEAARIA NK + KF  KDAFHLR RVHP+HVLRINKMLSCAGADRLQ+GMRGAFG
Sbjct: 61  TSEALEAARIAANKNLIKFISKDAFHLRCRVHPWHVLRINKMLSCAGADRLQSGMRGAFG 120

Query: 121 KPQAIVFMLKR 131
           K       +  
Sbjct: 121 KALGKAARVDI 131
>2zkr_h 60S ribosomal protein L10; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 214 Back     alignment and structure
>1vq8_H 50S ribosomal protein L10E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.41.4.1 PDB: 1vq4_H* 1vq5_H* 1vq6_H* 1vq7_H* 1s72_H* 1vq9_H* 1vqk_H* 1vql_H* 1vqm_H* 1vqn_H* 1vqo_H* 1vqp_H* 2otj_H* 2otl_H* 2qa4_H* 2qex_H* 1yhq_H* 1yi2_H* 1yij_H* 1yit_H* ... Length = 171 Back     alignment and structure
>3j0l_J Ribosomal protein L10; mammalia, translation, elongation cycle, tRNA, ribosome; 9.80A {Oryctolagus cuniculus} PDB: 3j0q_J 3izc_I 3izs_I 3o58_J 3o5h_J 3u5e_I 3u5i_I Length = 219 Back     alignment and structure
>1ffk_F Ribosomal protein L10E; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: d.41.4.1 PDB: 1jj2_H 1k73_J* 1k8a_J* 1k9m_J* 1kc8_J* 1kd1_J* 1kqs_H* 1m1k_J* 1m90_J* 1n8r_J* 1nji_J* 1q7y_J* 1q81_J* 1q82_J* 1q86_J* 1qvf_H 1qvg_H 1w2b_H 3cxc_H* 1giy_P ... Length = 157 Back     alignment and structure
>2pa2_A 60S ribosomal protein L10; QM protein, , structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.50A {Homo sapiens} SCOP: d.41.4.1 Length = 151 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query162
4a17_H215 RPL10, 60S ribosomal protein L10; eukaryotic ribos 100.0
3j21_N181 50S ribosomal protein L10E; archaea, archaeal, KIN 100.0
3j0l_J219 Ribosomal protein L10; mammalia, translation, elon 100.0
1vq8_H171 50S ribosomal protein L10E; ribosome 50S, protein- 100.0
2zkr_h214 60S ribosomal protein L10; protein-RNA complex, 60 100.0
3iz5_I224 60S ribosomal protein L10 (L10E); eukaryotic ribos 100.0
1ffk_F157 Ribosomal protein L10E; ribosome assembly, RNA-RNA 100.0
2pa2_A151 60S ribosomal protein L10; QM protein, , structura 100.0
2ftc_I118 Mitochondrial ribosomal protein L16, 39S ribosomal 100.0
3r8s_M136 50S ribosomal protein L16; protein biosynthesis, R 100.0
3bbo_O135 Ribosomal protein L16; large ribosomal subunit, sp 100.0
2zjr_J142 50S ribosomal protein L16; ribosome, large ribosom 100.0
>4a17_H RPL10, 60S ribosomal protein L10; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_H 4a1c_H 4a1e_H Back     alignment and structure
Probab=100.00  E-value=1.9e-82  Score=526.99  Aligned_cols=158  Identities=62%  Similarity=0.945  Sum_probs=143.1

Q ss_pred             CCCCccccccccCCCCCCCCCCcCCCCCCceeEEecCCCCCCCCCCCeEEEEEecCccccchhHHHHHHHHHhhhhHHhh
Q 031274            1 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFA   80 (162)
Q Consensus         1 M~~rPa~cYr~~~~~pY~r~~y~~GvP~~KI~~fd~G~~~a~~~~fp~~~~Lvs~E~~qIss~aLEAARiaankyl~k~~   80 (162)
                      ||+|||+|||+++|||||||+||+||||+||++|||||++|++||||+|+||+|+|++||||+||||||||+||||+|++
T Consensus         1 M~~rParcYr~~~~~pY~r~~y~~GvP~~KI~~fd~G~kka~~~~fp~~~~L~a~E~~qIss~qIEAARia~nRyl~r~~   80 (215)
T 4a17_H            1 MGRRPARCYRQPKGKPYPKSRYNRGVPDARIRIYDSGRKKATVEEFPYVVHIVSDEKEQITSEALEAARIAANKNLIKFI   80 (215)
T ss_dssp             -CCCCGGGTSSCCSCCCCSCTTCCSCCCCSCCCCEEECTTCCTTTCCEEEEEEECSCEEEEHHHHHHHHHHHHHHHHHHS
T ss_pred             CCCCcHHhhccccCCCCchhhccCCCCCCcEEEEeCCCCcCCcccCCeeEEEEECccccCcHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999889


Q ss_pred             CCcceeEEEEecCCceeeecccccccchhhhhccccCcCCCcceEEEEEeeceEEEe-----cCHHHHHHHHHHhhcCCC
Q 031274           81 GKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQAIVFMLKRLFVVQS-----SSFLVAKKSLSAESGVSP  155 (162)
Q Consensus        81 Gk~~f~l~Irv~P~hvlr~nkmls~AGADRlq~gMr~afGkp~g~vArV~~g~~i~~-----~~~~~AkeALr~a~~klp  155 (162)
                      |||+||+|||+|||||||+|||||||||||||+|||+|||+|+||||||++||+||+     +++++|+|||++|++|||
T Consensus        81 GK~~fhl~IRifP~~vir~nkmls~agAdRl~tgM~~akGkp~gwvArVk~Gqilfei~g~~~~~~~A~eALr~A~~KlP  160 (215)
T 4a17_H           81 SKDAFHLRCRVHPWHVLRINKMLSCAGADRLQSGMRGAFGKALGKAARVDIGSILFSVRVKEPHVKYAIDALTRAKAKFP  160 (215)
T ss_dssp             CGGGCEEEECCCCCEEEEECC-----------CTTSCCCCEEEEEEEEECTTCEEEEEEECGGGHHHHHHHHHHHGGGSS
T ss_pred             CCccceEEEEECCCceeeecccccccchhhhhccccCCCCCCCeEEEEEcCCCEEEEEEecCCCHHHHHHHHHHHhhhCC
Confidence            999999999999999999999999999999999999999999999999999999997     679999999999999999


Q ss_pred             cce
Q 031274          156 SLA  158 (162)
Q Consensus       156 ~~~  158 (162)
                      +=.
T Consensus       161 ~~t  163 (215)
T 4a17_H          161 GRQ  163 (215)
T ss_dssp             SCE
T ss_pred             Cce
Confidence            754
>3j21_N 50S ribosomal protein L10E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>3j0l_J Ribosomal protein L10; mammalia, translation, elongation cycle, tRNA, ribosome; 9.80A {Oryctolagus cuniculus} PDB: 3j0q_J 3izc_I 3izs_I 3o58_J 3o5h_J 3u5e_I 3u5i_I 4b6a_I Back     alignment and structure
>1vq8_H 50S ribosomal protein L10E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.41.4.1 PDB: 1vq4_H* 1vq5_H* 1vq6_H* 1vq7_H* 1s72_H* 1vq9_H* 1vqk_H* 1vql_H* 1vqm_H* 1vqn_H* 1vqo_H* 1vqp_H* 2otj_H* 2otl_H* 2qa4_H* 2qex_H* 1yhq_H* 1yi2_H* 1yij_H* 1yit_H* ... Back     alignment and structure
>2zkr_h 60S ribosomal protein L10; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Back     alignment and structure
>1ffk_F Ribosomal protein L10E; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: d.41.4.1 PDB: 1jj2_H 1k73_J* 1k8a_J* 1k9m_J* 1kc8_J* 1kd1_J* 1kqs_H* 1m1k_J* 1m90_J* 1n8r_J* 1nji_J* 1q7y_J* 1q81_J* 1q82_J* 1q86_J* 1qvf_H 1qvg_H 1w2b_H 3cxc_H* 1giy_P ... Back     alignment and structure
>2pa2_A 60S ribosomal protein L10; QM protein, , structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.50A {Homo sapiens} SCOP: d.41.4.1 Back     alignment and structure
>2ftc_I Mitochondrial ribosomal protein L16, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_I Back     alignment and structure
>3r8s_M 50S ribosomal protein L16; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_K 1p86_K 1vs8_M 1vs6_M 2aw4_M 2awb_M 1vt2_M 2i2v_M 2j28_M 2i2t_M* 2qao_M* 2qba_M* 2qbc_M* 2qbe_M 2qbg_M 2qbi_M* 2qbk_M* 2qov_M 2qox_M 2qoz_M* ... Back     alignment and structure
>3bbo_O Ribosomal protein L16; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.2 Back     alignment and structure
>2zjr_J 50S ribosomal protein L16; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.41.4.2 PDB: 1sm1_K* 2zjp_J* 2zjq_J 1nkw_K 3cf5_J* 3dll_J* 3pio_J* 1njm_K* 1nwx_K* 1njp_K* 1xbp_K* 1y69_K 1nwy_K* 3pip_J* 1pnu_K 1pny_K 1vor_N 1vou_N 1vow_N 1voy_N ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 162
d1jj2h_167 d.41.4.1 (H:) Ribosomal protein L10e {Archaeon Hal 2e-59
d1vqoh1163 d.41.4.1 (H:1-163) Ribosomal protein L10e {Archaeo 2e-57
d2pa2a1137 d.41.4.1 (A:40-176) Ribosomal protein L10e {Human 5e-38
>d1jj2h_ d.41.4.1 (H:) Ribosomal protein L10e {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 167 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: alpha/beta-Hammerhead
superfamily: Ribosomal protein L16p/L10e
family: Ribosomal protein L10e
domain: Ribosomal protein L10e
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score =  180 bits (458), Expect = 2e-59
 Identities = 44/147 (29%), Positives = 66/147 (44%), Gaps = 4/147 (2%)

Query: 4   RPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSE 63
           +P   YR      Y +  +  G+P  KI  +D+G        +P  V LV  +   +   
Sbjct: 1   KPGAMYRNSSKPAYTRREYISGIPGKKIAQFDMG-NNGAGPTYPAQVELVVEKPVQIRHN 59

Query: 64  ALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQ 123
           ALEAAR+A N+Y+        +  R+R  PFHV+R NK  + A A     GMR  FGKP 
Sbjct: 60  ALEAARVAANRYVQNSGAAANYKFRIRKFPFHVIRENKAAAAAAAAAAADGMRAPFGKPV 119

Query: 124 ---AIVFMLKRLFVVQSSSFLVAKKSL 147
              A V     +F+   +     +++ 
Sbjct: 120 GTAARVHGANHIFIAWVNPDPNVEEAW 146
>d1vqoh1 d.41.4.1 (H:1-163) Ribosomal protein L10e {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 163 Back     information, alignment and structure
>d2pa2a1 d.41.4.1 (A:40-176) Ribosomal protein L10e {Human (Homo sapiens) [TaxId: 9606]} Length = 137 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query162
d1vqoh1163 Ribosomal protein L10e {Archaeon Haloarcula marism 100.0
d1jj2h_167 Ribosomal protein L10e {Archaeon Haloarcula marism 100.0
d2pa2a1137 Ribosomal protein L10e {Human (Homo sapiens) [TaxI 100.0
d2gyck1131 Ribosomal protein L16p {Escherichia coli [TaxId: 5 99.96
d2j01q1136 Ribosomal protein L16p {Thermus thermophilus [TaxI 99.95
>d1vqoh1 d.41.4.1 (H:1-163) Ribosomal protein L10e {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: alpha/beta-Hammerhead
superfamily: Ribosomal protein L16p/L10e
family: Ribosomal protein L10e
domain: Ribosomal protein L10e
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=100.00  E-value=2.3e-72  Score=448.04  Aligned_cols=154  Identities=29%  Similarity=0.465  Sum_probs=138.9

Q ss_pred             CccccccccCCCCCCCCCCcCCCCCCceeEEecCCCCCCCCCCCeEEEEEecCccccchhHHHHHHHHHhhhhHHhhCCc
Q 031274            4 RPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKD   83 (162)
Q Consensus         4 rPa~cYr~~~~~pY~r~~y~~GvP~~KI~~fd~G~~~a~~~~fp~~~~Lvs~E~~qIss~aLEAARiaankyl~k~~Gk~   83 (162)
                      ||++|||++++|||||++||+|||++||++|||||++++.+|||+|++|+++|.+||||+||||||+|+||||.+.+|++
T Consensus         1 rP~~~yr~~~~~~ytr~~yi~gvp~~kI~~f~~G~~~~~~~~f~~~~~L~a~e~~~i~~~~iEAaR~a~~r~l~k~~G~~   80 (163)
T d1vqoh1           1 KPASMYRDIDKPAYTRREYITGIPGSKIAQHKMGRKQKDADDYPVQISLIVEETVQLRHGSLEASRLSANRHLIKELGEE   80 (163)
T ss_dssp             CCGGGTSSCCSCCCCCTTSCCCCCCCCCCCSEEECTTSCGGGCSEEEEEEESSCEEEEHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             CCcccccCCCCCCCccccccCCCCCcceEEeccCCccccccccceEEEEEEcccceecHHHHHHHHHHHHhhhhhhcCcc
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999986


Q ss_pred             -ceeEEEEecCCceeeecccccccchhhhhccccCcCCCcceEEEEEeeceEEEe-----cCHHHHHHHHHHhhcCCCcc
Q 031274           84 -AFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQAIVFMLKRLFVVQS-----SSFLVAKKSLSAESGVSPSL  157 (162)
Q Consensus        84 -~f~l~Irv~P~hvlr~nkmls~AGADRlq~gMr~afGkp~g~vArV~~g~~i~~-----~~~~~AkeALr~a~~klp~~  157 (162)
                       |||+|||+|||||||+|||+|+|||||||+|||+|||+|+||||||++|++|||     ++++.|+|||++|++|||+=
T Consensus        81 ~~~~~~irvfP~~~v~~kp~~~~agadrl~~~Mg~gkG~p~~~aArVk~G~ilfei~~~~~~~~~akeALr~A~~KLP~~  160 (163)
T d1vqoh1          81 GDYKMTLRKFPHQVLRENKQATGAGADRVSDGMRAAFGKIVGTAARVQAGEQLFTAYCNVEDAEHVKEAFRRAYNKITPS  160 (163)
T ss_dssp             CSCEEEECCCCCEEEEECC-----------CCSTTCCCEEEEEEEEECTTCEEEEEEECSTTHHHHHHHHHHHGGGSSSC
T ss_pred             ccceEEEEecCcceeecChhhhhcccccccccccCCCCCccEEEEEECCCCEEEEEEeccccHHHHHHHHHHHhccCCCc
Confidence             699999999999999999999999999999999999999999999999999998     46799999999999999974
>d1jj2h_ d.41.4.1 (H:) Ribosomal protein L10e {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
>d2pa2a1 d.41.4.1 (A:40-176) Ribosomal protein L10e {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2gyck1 d.41.4.2 (K:3-133) Ribosomal protein L16p {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2j01q1 d.41.4.2 (Q:6-141) Ribosomal protein L16p {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure