Citrus Sinensis ID: 031283

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160--
Protein Sequence
MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEELTGLEQDILDGLKIIHECKVIKPYTLCASSSTTVIVNVSNLL
Secondary Structure (PSIPRED)
ccccccccEEcccccccccccccccccHHHHHHHHHHcccccEEEEEEEccccEEEEccccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEEEEcccccEEEEEcHcccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTakaheyispstttKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEELTGLEQDILDGLKIiheckvikpytlcasssTTVIVNVSNLL
Flexible Loop (DISEMBL)
mgrgkmemkrienatnrqvtfskrrnglfKKARELTILCDAKVSILICSSTAkaheyispstttkqLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEELTGLEQDILDGLKIIHECKVIKPytlcasssttvivnvsnll
Low Complexity Region (SEG)
MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEELTGLEQDILDGLKIIHECKVIKPYTLCAsssttvivnvsnLL
Disordered region (IsUnstruct)
************************RNGLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEELTGLEQDILDGLKIIHECKVIKPYTLCASSSTTVIVNV****
Disordered Region (DISOPRED)
MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKTLR************ENLGAVEQVNRILKKQIRQRMGESLNDLTLEELTGLEQDILDGLKIIHECKVIKPYTLCASS*TTVIVNVSNL*
Disordered Region (DISEMBL)
*********RIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEELTGLEQDILDGLKIIHECKVIKPYTLCASSSTTVIVNVSNLL
Disordered Region (DISPRO)
****KMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEELTGLEQDILDGLKIIHECKVIKPYTLCASSSTTVIVNVS*LL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEELTGLEQDILDGLKIIHECKVIKPYTLCASSSTTVIVNVSNLL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	162	2.2.26 [Sep-21-2011]
Q07472	231	Floral homeotic protein P	N/A	no	0.858	0.601	0.683	2e-50
P23706	227	Floral homeotic protein D	N/A	no	0.858	0.612	0.661	4e-49
P35632	232	Floral homeotic protein A	yes	no	0.864	0.603	0.557	9e-41
Q944S9	224	MADS-box transcription fa	yes	no	0.858	0.620	0.553	2e-39
Q42498	214	MADS-box protein CMB2 OS=	N/A	no	0.969	0.733	0.478	4e-36
Q07474	212	Floral homeotic protein P	N/A	no	0.833	0.636	0.488	4e-32
Q03378	215	Floral homeotic protein G	N/A	no	0.808	0.609	0.458	2e-28
P48007	208	Floral homeotic protein P	no	no	0.814	0.634	0.462	6e-27
Q40702	209	MADS-box transcription fa	no	no	0.814	0.631	0.431	1e-26
Q8VWM8	259	MADS-box protein ZMM17 OS	N/A	no	0.759	0.474	0.455	3e-26

>sp|Q07472|MADS1_PETHY Floral homeotic protein PMADS 1 OS=Petunia hybrida GN=PMADS1 PE=2 SV=1

 Score =  197 bits (501), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 95/139 (68%), Positives = 116/139 (83%)

Query: 1   MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60
           M RGK+++KRIEN TNRQVT+SKRRNGLFKKA ELT+LCDAKVSI++ SST K HE+ISP
Sbjct: 1   MARGKIQIKRIENQTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMISSTGKLHEFISP 60

Query: 61  STTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEE 120
           S TTKQL DLYQKT+ VDLW+SHYEKM E L  +++VNR L+K+IRQRMGESLNDL  E+
Sbjct: 61  SITTKQLFDLYQKTVGVDLWNSHYEKMQEQLRKLKEVNRNLRKEIRQRMGESLNDLNYEQ 120

Query: 121 LTGLEQDILDGLKIIHECK 139
           L  L +++ + LK+I E K
Sbjct: 121 LEELMENVDNSLKLIRERK 139

Transcription factor involved in the genetic control of flower development. Necessary for the normal development of petals. Absence of the PMADS1 protein causes transformation of petals into sepals.
Petunia hybrida (taxid: 4102)

>sp|P23706|DEFA_ANTMA Floral homeotic protein DEFICIENS OS=Antirrhinum majus GN=DEFA PE=1 SV=1

 Score =  193 bits (491), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 92/139 (66%), Positives = 114/139 (82%)

Query: 1   MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60
           M RGK+++KRIEN TNRQVT+SKRRNGLFKKA EL++LCDAKVSI++ SST K HEYISP
Sbjct: 1   MARGKIQIKRIENQTNRQVTYSKRRNGLFKKAHELSVLCDAKVSIIMISSTQKLHEYISP 60

Query: 61  STTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEE 120
           +T TKQL D YQK + VDLWSSHYEKM E+L  + +VNR L+++IRQRMGESLNDL  E+
Sbjct: 61  TTATKQLFDQYQKAVGVDLWSSHYEKMQEHLKKLNEVNRNLRREIRQRMGESLNDLGYEQ 120

Query: 121 LTGLEQDILDGLKIIHECK 139
           +  L +D+ + LK+I E K
Sbjct: 121 IVNLIEDMDNSLKLIRERK 139

Transcription factor involved in the genetic control of flower development. Acts in conjunction with GLOBOSA (glo).

Antirrhinum majus (taxid: 4151)

>sp|P35632|AP3_ARATH Floral homeotic protein APETALA 3 OS=Arabidopsis thaliana GN=AP3 PE=1 SV=1

 Score =  165 bits (418), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 78/140 (55%), Positives = 109/140 (77%)

Query: 1   MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60
           M RGK+++KRIEN TNRQVT+SKRRNGLFKKA ELT+LCDA+VSI++ SS+ K HEYISP
Sbjct: 1   MARGKIQIKRIENQTNRQVTYSKRRNGLFKKAHELTVLCDARVSIIMFSSSNKLHEYISP 60

Query: 61  STTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEE 120
           +TTTK+++DLYQ    VD+W++ YE+M E    + + NR L+ QI+QR+GE L++L ++E
Sbjct: 61  NTTTKEIVDLYQTISDVDVWATQYERMQETKRKLLETNRNLRTQIKQRLGECLDELDIQE 120

Query: 121 LTGLEQDILDGLKIIHECKV 140
           L  LE ++ +  K++ E K 
Sbjct: 121 LRRLEDEMENTFKLVRERKF 140

Probable transcription factor involved in the genetic control of flower development. Is required for normal development of petals and stamens in the wild-type flower. Forms an heterodimer with PISTILLATA that is required for autoregulation of both AP3 and PI genes. AP3/PI heterodimer interacts with APETALA1 or SEPALLATA3 to form a ternary complex that could be responsible for the regulation of the genes involved in the flower development. AP3/PI heterodimer activates the expression of NAP.

Arabidopsis thaliana (taxid: 3702)

>sp|Q944S9|MAD16_ORYSJ MADS-box transcription factor 16 OS=Oryza sativa subsp. japonica GN=MADS16 PE=1 SV=2

 Score =  161 bits (408), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 77/139 (55%), Positives = 100/139 (71%)

Query: 1   MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60
           MGRGK+E+KRIENATNRQVT+SKRR G+ KKARELT+LCDA+V+I++ SST K HE+ SP
Sbjct: 1   MGRGKIEIKRIENATNRQVTYSKRRTGIMKKARELTVLCDAQVAIIMFSSTGKYHEFCSP 60

Query: 61  STTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEE 120
           ST  K + D YQ+ +   LW   YE M   L  ++ +NR L+ +IRQRMGE L+ L  +E
Sbjct: 61  STDIKGIFDRYQQAIGTSLWIEQYENMQRTLSHLKDINRNLRTEIRQRMGEDLDGLEFDE 120

Query: 121 LTGLEQDILDGLKIIHECK 139
           L GLEQ++   LK +   K
Sbjct: 121 LRGLEQNVDAALKEVRHRK 139

Probable transcription factor involved in the development of floral organs. Required for normal development of lodicules and stamens (whorls 2 and 3). May function as an heterodimer with MADS4.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q42498|CMB2_DIACA MADS-box protein CMB2 OS=Dianthus caryophyllus GN=CMB2 PE=2 SV=1

 Score =  150 bits (378), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 77/161 (47%), Positives = 108/161 (67%), Gaps = 4/161 (2%)

Query: 1   MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60
           MGRGK+E+++IEN TNRQVTFSKRRNG+ KKA+ELT+LCDAKVS+L+ SST K H Y+SP
Sbjct: 1   MGRGKLEIRKIENKTNRQVTFSKRRNGIMKKAQELTVLCDAKVSLLMISSTHKLHHYLSP 60

Query: 61  STTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEE 120
             + K++ D YQK   VDLW   +E+M E    V ++N +L+++I +RMG  L  LTL E
Sbjct: 61  GVSLKKMYDEYQKIEGVDLWRKQWERMQEQHRKVLELNSLLRREISRRMGGDLEGLTLVE 120

Query: 121 LTGLEQDILDGLKIIHECKVIKPYTLCASSSTTVIVNVSNL 161
           L+ L+Q++ + +  I      K Y    + + T    + NL
Sbjct: 121 LSALQQEMEEAIIQIRN----KKYHTIKNQTGTTRKKIKNL 157

Dianthus caryophyllus (taxid: 3570)

>sp|Q07474|MADS2_PETHY Floral homeotic protein PMADS 2 OS=Petunia hybrida GN=PMADS2 PE=2 SV=1

 Score =  137 bits (344), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 66/135 (48%), Positives = 96/135 (71%)

Query: 1   MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60
           MGRGK+E+KRIEN++NRQVT+SKRRNG+ KKA+E+T+LCDAKVS++I  ++ K HEY SP
Sbjct: 1   MGRGKIEIKRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAKVSLIIFGNSGKMHEYCSP 60

Query: 61  STTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEE 120
           STT   +LD YQKT    LW + +E +   +  +++ N  ++ ++R   GE +N L  +E
Sbjct: 61  STTLPDMLDGYQKTSGRRLWDAKHENLSNEIDRIKKENDNMQVKLRHLKGEDINSLNHKE 120

Query: 121 LTGLEQDILDGLKII 135
           L  LE+ + +GL  I
Sbjct: 121 LMVLEEGLTNGLSSI 135

Transcription factor involved in the genetic control of flower development.

Petunia hybrida (taxid: 4102)

>sp|Q03378|GLOB_ANTMA Floral homeotic protein GLOBOSA OS=Antirrhinum majus GN=GLO PE=1 SV=1

 Score =  125 bits (313), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 60/131 (45%), Positives = 89/131 (67%)

Query: 1   MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60
           MGRGK+E+KRIEN++NRQVT+SKRRNG+ KKA+E+++LCDA VS++I +S+ K HE+ SP
Sbjct: 1   MGRGKIEIKRIENSSNRQVTYSKRRNGIMKKAKEISVLCDAHVSVIIFASSGKMHEFCSP 60

Query: 61  STTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEE 120
           STT   +LD Y K     LW   +E +   +  V++ N  ++ ++R   GE +  L  +E
Sbjct: 61  STTLVDMLDHYHKLSGKRLWDPKHEHLDNEINRVKKENDSMQIELRHLKGEDITTLNYKE 120

Query: 121 LTGLEQDILDG 131
           L  LE  + +G
Sbjct: 121 LMVLEDALENG 131

Transcription factor involved in the genetic control of flower development. Acts in conjunction with DEFICIENS (defA).

Antirrhinum majus (taxid: 4151)

>sp|P48007|PIST_ARATH Floral homeotic protein PISTILLATA OS=Arabidopsis thaliana GN=PI PE=1 SV=1

 Score =  119 bits (299), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 61/132 (46%), Positives = 85/132 (64%)

Query: 1   MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60
           MGRGK+E+KRIENA NR VTFSKRRNGL KKA+E+T+LCDAKV+++I +S  K  +Y  P
Sbjct: 1   MGRGKIEIKRIENANNRVVTFSKRRNGLVKKAKEITVLCDAKVALIIFASNGKMIDYCCP 60

Query: 61  STTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEE 120
           S     +LD YQK     LW + +E +   +  +++ N  L+ ++R   GE +  L L+ 
Sbjct: 61  SMDLGAMLDQYQKLSGKKLWDAKHENLSNEIDRIKKENDSLQLELRHLKGEDIQSLNLKN 120

Query: 121 LTGLEQDILDGL 132
           L  +E  I  GL
Sbjct: 121 LMAVEHAIEHGL 132

Probable transcription factor involved in the genetic control of flower development. Is required for normal development of petals and stamens in the wild-type flower. Forms an heterodimer with APETALA3 that is required for autoregulation of both AP3 and PI genes. AP3/PI heterodimer interacts with APETALA1 or SEPALLATA3 to form a ternary complex that could be responsible for the regulation of the genes involved in the flower development. AP3/PI heterodimer activates the expression of NAP.

Arabidopsis thaliana (taxid: 3702)

>sp|Q40702|MADS2_ORYSJ MADS-box transcription factor 2 OS=Oryza sativa subsp. japonica GN=MADS2 PE=2 SV=1

 Score =  119 bits (297), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 57/132 (43%), Positives = 91/132 (68%)

Query: 1   MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60
           MGRGK+E+KRIEN+TNRQVTFSKRR+G+ KKARE+++LCDA+V ++I SS  K ++Y SP
Sbjct: 1   MGRGKIEIKRIENSTNRQVTFSKRRSGILKKAREISVLCDAEVGVVIFSSAGKLYDYCSP 60

Query: 61  STTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEE 120
            T+  ++L+ YQ      LW   ++ +   +  +++ N  ++ ++R   GE LN L  +E
Sbjct: 61  KTSLSRILEKYQTNSGKILWDEKHKSLSAEIDRIKKENDNMQIELRHLKGEDLNSLQPKE 120

Query: 121 LTGLEQDILDGL 132
           L  +E+ + +G+
Sbjct: 121 LIMIEEALDNGI 132

Probable transcription factor involved in the development of floral organs. B-class protein required for normal development of lodicules (whorl 2).

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8VWM8|M17_MAIZE MADS-box protein ZMM17 OS=Zea mays GN=M17 PE=2 SV=1

 Score =  117 bits (293), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 61/134 (45%), Positives = 92/134 (68%), Gaps = 11/134 (8%)

Query: 1   MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60
           MGRGK+E+KRIEN+TNRQVTFSKRR GL KKA EL +LCDA+V ++I SST K  EY SP
Sbjct: 1   MGRGKIEIKRIENSTNRQVTFSKRRGGLLKKANELAVLCDARVGVVIFSSTGKMFEYCSP 60

Query: 61  STTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRI------LKKQIRQRMGESLN 114
           + + ++L++ YQ        +SH+E++  +   + ++ R+      L+  IR+  G+ L+
Sbjct: 61  ACSLRELIEQYQHA-----TNSHFEEINHDQQILLEMTRMKNEMEKLETGIRRYTGDDLS 115

Query: 115 DLTLEELTGLEQDI 128
            LTL++++ LEQ +
Sbjct: 116 SLTLDDVSDLEQQL 129

Probable transcription factor.

Zea mays (taxid: 4577)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	162
343887324	211	MADS-box protein (CitMADS8) [Citrus unsh	0.858	0.658	1.0	3e-75
116078103	211	MADS-box protein [Citrus unshiu]	0.858	0.658	0.992	4e-74
315418854	226	AP3 [Actinidia eriantha]	0.858	0.615	0.690	4e-50
332156472	240	PgMADS protein9 [Panax ginseng]	0.864	0.583	0.671	1e-48
729974	231	RecName: Full=Floral homeotic protein PM	0.858	0.601	0.683	1e-48
449460215	276	PREDICTED: floral homeotic protein DEFIC	0.858	0.503	0.661	1e-48
126023786	226	flowering-related B-class MADS-box prote	0.858	0.615	0.669	1e-48
225458107	226	PREDICTED: floral homeotic protein DEFIC	0.858	0.615	0.669	2e-48
1370276	227	MADS-box protein [Nicotiana tabacum]	0.858	0.612	0.676	2e-48
333827677	226	apetala3-like protein [Vitis labrusca x	0.858	0.615	0.661	5e-48

>gi|343887324|dbj|BAK61870.1| MADS-box protein (CitMADS8) [Citrus unshiu]

 Score =  285 bits (730), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 139/139 (100%), Positives = 139/139 (100%)

Query: 1   MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60
           MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP
Sbjct: 1   MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60

Query: 61  STTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEE 120
           STTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEE
Sbjct: 61  STTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEE 120

Query: 121 LTGLEQDILDGLKIIHECK 139
           LTGLEQDILDGLKIIHECK
Sbjct: 121 LTGLEQDILDGLKIIHECK 139

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116078103|dbj|BAF34915.1| MADS-box protein [Citrus unshiu]

 Score =  282 bits (721), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 138/139 (99%), Positives = 138/139 (99%)

Query: 1   MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60
           MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP
Sbjct: 1   MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60

Query: 61  STTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEE 120
           STTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEE
Sbjct: 61  STTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEE 120

Query: 121 LTGLEQDILDGLKIIHECK 139
           LTGLEQDILDGLKII ECK
Sbjct: 121 LTGLEQDILDGLKIIRECK 139

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|315418854|gb|ADU15474.1| AP3 [Actinidia eriantha]

 Score =  202 bits (514), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 96/139 (69%), Positives = 117/139 (84%)

Query: 1   MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60
           M RGK+++KRIEN+TNRQVT+SKRRNGLFKKA ELT+LCDAKVSI++ SST K HEYISP
Sbjct: 1   MARGKIQIKRIENSTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMISSTGKLHEYISP 60

Query: 61  STTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEE 120
           S +TKQL D YQKTL +DLWSSHYEKM E+L  ++ VNR  +++IRQRMGESLN+L+ E+
Sbjct: 61  SVSTKQLFDQYQKTLGIDLWSSHYEKMQEHLKKLKDVNRNFRREIRQRMGESLNELSYED 120

Query: 121 LTGLEQDILDGLKIIHECK 139
           L GLEQD+   LKII + K
Sbjct: 121 LRGLEQDMETSLKIIRDRK 139

Source: Actinidia eriantha

Species: Actinidia eriantha

Genus: Actinidia

Family: Actinidiaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|332156472|dbj|BAK20024.1| PgMADS protein9 [Panax ginseng]

 Score =  197 bits (501), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 94/140 (67%), Positives = 117/140 (83%)

Query: 1   MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60
           M RGK+++KRIEN+TNRQVT+SKRRNGLFKKA ELT+LCDAKVSI++ S+T K HEYISP
Sbjct: 1   MARGKIQIKRIENSTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMVSTTNKLHEYISP 60

Query: 61  STTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEE 120
           S +TKQ  DLYQKT R+DLWSSHYE M E L  +++VN+ LK++IR+RMGESLN +TLEE
Sbjct: 61  SISTKQFFDLYQKTKRIDLWSSHYEAMQEQLRKLKEVNKNLKREIRRRMGESLNGMTLEE 120

Query: 121 LTGLEQDILDGLKIIHECKV 140
           L  LEQ + + +KII E K+
Sbjct: 121 LWSLEQKMDESVKIIRERKM 140

Source: Panax ginseng

Species: Panax ginseng

Genus: Panax

Family: Araliaceae

Order: Apiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|729974|sp|Q07472.1|MADS1_PETHY RecName: Full=Floral homeotic protein PMADS 1; AltName: Full=Green petal homeotic protein gi|22665|emb|CAA49567.1| GP (green petal) [Petunia x hybrida] gi|110836621|gb|AAQ72510.2| DEF [Petunia x hybrida]

 Score =  197 bits (501), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 95/139 (68%), Positives = 116/139 (83%)

Query: 1   MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60
           M RGK+++KRIEN TNRQVT+SKRRNGLFKKA ELT+LCDAKVSI++ SST K HE+ISP
Sbjct: 1   MARGKIQIKRIENQTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMISSTGKLHEFISP 60

Query: 61  STTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEE 120
           S TTKQL DLYQKT+ VDLW+SHYEKM E L  +++VNR L+K+IRQRMGESLNDL  E+
Sbjct: 61  SITTKQLFDLYQKTVGVDLWNSHYEKMQEQLRKLKEVNRNLRKEIRQRMGESLNDLNYEQ 120

Query: 121 LTGLEQDILDGLKIIHECK 139
           L  L +++ + LK+I E K
Sbjct: 121 LEELMENVDNSLKLIRERK 139

Source: Petunia x hybrida

Species: Petunia x hybrida

Genus: Petunia

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460215|ref|XP_004147841.1| PREDICTED: floral homeotic protein DEFICIENS-like [Cucumis sativus] gi|449476867|ref|XP_004154859.1| PREDICTED: floral homeotic protein DEFICIENS-like [Cucumis sativus]

 Score =  197 bits (501), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 92/139 (66%), Positives = 116/139 (83%)

Query: 1   MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60
           M RGK+++KRIEN TNRQVT+SKRRNGLFKKA ELT+LCDAKVSI++ SST K HEYISP
Sbjct: 33  MARGKIQIKRIENPTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMFSSTGKLHEYISP 92

Query: 61  STTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEE 120
           +T+TK+L D YQKTL VDLW +HYE+M +NL  ++ +NR L++QIRQRMGE +NDL+ EE
Sbjct: 93  ATSTKELFDQYQKTLGVDLWITHYERMQDNLKKLKDINRNLRRQIRQRMGECMNDLSFEE 152

Query: 121 LTGLEQDILDGLKIIHECK 139
           L  LEQD+ + ++II E K
Sbjct: 153 LRCLEQDMDNAVRIIRERK 171

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|126023786|gb|ABN71371.1| flowering-related B-class MADS-box protein APETALA3 [Vitis vinifera] gi|269116070|gb|ACZ26526.1| apetala3 [Vitis vinifera]

 Score =  197 bits (500), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 93/139 (66%), Positives = 116/139 (83%)

Query: 1   MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60
           M RGK+E+KRIEN+TNRQVT+SKRRNG+FKKA ELT+LCDAKVSI++ SST K HEYISP
Sbjct: 1   MARGKIEIKRIENSTNRQVTYSKRRNGIFKKASELTVLCDAKVSIIMLSSTGKLHEYISP 60

Query: 61  STTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEE 120
           STTTKQ+ D YQ TL VDLWS HYE+M ENL  ++ VN+ L+K+IRQRMGE L+DL++EE
Sbjct: 61  STTTKQIFDQYQNTLGVDLWSYHYERMQENLKKLKDVNKNLRKEIRQRMGEHLSDLSVEE 120

Query: 121 LTGLEQDILDGLKIIHECK 139
           L  LEQ++   LK++ + K
Sbjct: 121 LRDLEQEMESSLKMVRDRK 139

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225458107|ref|XP_002279735.1| PREDICTED: floral homeotic protein DEFICIENS [Vitis vinifera] gi|125616882|gb|ABN46893.1| AP3-like MADS-box protein [Vitis labrusca x Vitis vinifera] gi|302142587|emb|CBI19790.3| unnamed protein product [Vitis vinifera]

 Score =  197 bits (500), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 93/139 (66%), Positives = 116/139 (83%)

Query: 1   MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60
           M RGK+E+KRIEN+TNRQVT+SKRRNG+FKKA ELT+LCDAKVSI++ SST K HEYISP
Sbjct: 1   MARGKIEIKRIENSTNRQVTYSKRRNGIFKKASELTVLCDAKVSIIMLSSTGKLHEYISP 60

Query: 61  STTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEE 120
           STTTKQ+ D YQ TL VDLWS HYE+M ENL  ++ VN+ L+K+IRQRMGE L+DL++EE
Sbjct: 61  STTTKQIFDQYQNTLGVDLWSYHYERMQENLKKLKDVNKNLRKEIRQRMGEHLSDLSVEE 120

Query: 121 LTGLEQDILDGLKIIHECK 139
           L  LEQ++   LK++ + K
Sbjct: 121 LRDLEQEMESSLKMVRDRK 139

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|1370276|emb|CAA65288.1| MADS-box protein [Nicotiana tabacum]

 Score =  196 bits (499), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 94/139 (67%), Positives = 115/139 (82%)

Query: 1   MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60
           M RGK+++KRIEN TNRQVT+SKRRNGLFKKA ELT+LCDAKVSI++ SST K HE+ISP
Sbjct: 1   MARGKIQIKRIENQTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMISSTGKLHEFISP 60

Query: 61  STTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEE 120
           S TTKQL DLYQKT+ VDLW+SHYEKM E L  ++ VNR L+++IRQRMGESLNDL  E+
Sbjct: 61  SVTTKQLFDLYQKTVGVDLWNSHYEKMQEQLRKLKDVNRNLRREIRQRMGESLNDLNYEQ 120

Query: 121 LTGLEQDILDGLKIIHECK 139
           L  L +++ + LK+I E K
Sbjct: 121 LEELNENVDNSLKLIRERK 139

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|333827677|gb|AEG19541.1| apetala3-like protein [Vitis labrusca x Vitis vinifera]

 Score =  195 bits (496), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 92/139 (66%), Positives = 115/139 (82%)

Query: 1   MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60
           M RGK+E+KRIEN+TNRQVT+SKRRNG+FKKA ELT+LCDAKVSI++ SST K HEYISP
Sbjct: 1   MARGKIEIKRIENSTNRQVTYSKRRNGIFKKASELTVLCDAKVSIIMLSSTGKLHEYISP 60

Query: 61  STTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEE 120
           S TTKQ+ D YQ TL VDLWS HYE+M ENL  ++ VN+ L+K+IRQRMGE L+DL++EE
Sbjct: 61  SATTKQIFDQYQNTLGVDLWSYHYERMQENLKKLKDVNKNLRKEIRQRMGEHLSDLSVEE 120

Query: 121 LTGLEQDILDGLKIIHECK 139
           L  LEQ++   LK++ + K
Sbjct: 121 LRDLEQEMESSLKMVRDRK 139

Source: Vitis labrusca x Vitis vinifera

Species: Vitis labrusca x Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	162
UNIPROTKB|P23706	227	DEFA "Floral homeotic protein	0.858	0.612	0.661	3.4e-45
UNIPROTKB|Q9ZS27	228	gdef2 "MADS-box protein, GDEF2	0.864	0.614	0.614	6.6e-42
UNIPROTKB|Q9ZS28	226	gdef1 "MADs-box protein, GDEF1	0.895	0.641	0.581	2.2e-41
TAIR|locus:2096164	232	AP3 "APETALA 3" [Arabidopsis t	0.858	0.599	0.561	1.6e-38
UNIPROTKB|Q9ZS26	197	gglo1 "MADS-box protein, GGLO1	0.858	0.705	0.438	1.9e-28
UNIPROTKB|Q03378	215	GLO "Floral homeotic protein G	0.808	0.609	0.458	1.3e-27
TAIR|locus:2149264	208	PI "PISTILLATA" [Arabidopsis t	0.870	0.677	0.433	2.8e-27
TAIR|locus:2177125	268	AGL15 "AGAMOUS-like 15" [Arabi	0.808	0.488	0.454	6.1e-23
UNIPROTKB|Q9ZS25	210	gsqua1 "MADS-box protein, GSQU	0.851	0.657	0.388	2.6e-22
TAIR|locus:2137070	221	AGL14 "AGAMOUS-like 14" [Arabi	0.771	0.565	0.462	4.3e-22

UNIPROTKB|P23706 DEFA "Floral homeotic protein DEFICIENS" [Antirrhinum majus (taxid:4151)]

 Score = 475 (172.3 bits), Expect = 3.4e-45, P = 3.4e-45
 Identities = 92/139 (66%), Positives = 114/139 (82%)

Query:     1 MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60
             M RGK+++KRIEN TNRQVT+SKRRNGLFKKA EL++LCDAKVSI++ SST K HEYISP
Sbjct:     1 MARGKIQIKRIENQTNRQVTYSKRRNGLFKKAHELSVLCDAKVSIIMISSTQKLHEYISP 60

Query:    61 STTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEE 120
             +T TKQL D YQK + VDLWSSHYEKM E+L  + +VNR L+++IRQRMGESLNDL  E+
Sbjct:    61 TTATKQLFDQYQKAVGVDLWSSHYEKMQEHLKKLNEVNRNLRREIRQRMGESLNDLGYEQ 120

Query:   121 LTGLEQDILDGLKIIHECK 139
             +  L +D+ + LK+I E K
Sbjct:   121 IVNLIEDMDNSLKLIRERK 139

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q9ZS27 gdef2 "MADS-box protein, GDEF2" [Gerbera hybrid cultivar (taxid:18101)]

 Score = 444 (161.4 bits), Expect = 6.6e-42, P = 6.6e-42
 Identities = 86/140 (61%), Positives = 109/140 (77%)

Query:     1 MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60
             M RGK+++K+IEN+TNRQVT+SKRRNGLFKKA ELT+LCDAKVSI++ S T K HEYISP
Sbjct:     1 MARGKIQIKKIENSTNRQVTYSKRRNGLFKKASELTVLCDAKVSIIMVSCTDKLHEYISP 60

Query:    61 STTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEE 120
             S TTKQ  D YQK   +DLW+SHYEKM E L  +++VNR L++QIRQR+G+ L DL  EE
Sbjct:    61 SITTKQFFDQYQKASGIDLWNSHYEKMQEELRQLKEVNRNLRRQIRQRLGDCLEDLGFEE 120

Query:   121 LTGLEQDILDGLKIIHECKV 140
                LE++  + + II E K+
Sbjct:   121 FLDLEKESQEAVYIIRERKL 140

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q9ZS28 gdef1 "MADs-box protein, GDEF1" [Gerbera hybrid cultivar (taxid:18101)]

 Score = 439 (159.6 bits), Expect = 2.2e-41, P = 2.2e-41
 Identities = 86/148 (58%), Positives = 113/148 (76%)

Query:     1 MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60
             MGRGK+E+K+IEN TNRQVT+SKRRNG+FKKA ELT+LCDAKVS+++ S+T K HEYISP
Sbjct:     1 MGRGKIEIKKIENNTNRQVTYSKRRNGIFKKAHELTVLCDAKVSLIMFSNTGKFHEYISP 60

Query:    61 STTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQR-MGESLNDLTLE 119
             STTTK++ D YQ T+  DLWSSHYE+M E +  ++  N  L+++IRQR +GE  + L + 
Sbjct:    61 STTTKKMYDQYQSTVGFDLWSSHYERMKETMKKLKDTNNKLRREIRQRVLGEDFDGLDMN 120

Query:   120 ELTGLEQDILDGLKIIHECK--VIKPYT 145
             +LT LEQ + D L ++ E K  VIK  T
Sbjct:   121 DLTSLEQHMQDSLTLVRERKYHVIKTQT 148

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2096164 AP3 "APETALA 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 412 (150.1 bits), Expect = 1.6e-38, P = 1.6e-38
 Identities = 78/139 (56%), Positives = 109/139 (78%)

Query:     1 MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60
             M RGK+++KRIEN TNRQVT+SKRRNGLFKKA ELT+LCDA+VSI++ SS+ K HEYISP
Sbjct:     1 MARGKIQIKRIENQTNRQVTYSKRRNGLFKKAHELTVLCDARVSIIMFSSSNKLHEYISP 60

Query:    61 STTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEE 120
             +TTTK+++DLYQ    VD+W++ YE+M E    + + NR L+ QI+QR+GE L++L ++E
Sbjct:    61 NTTTKEIVDLYQTISDVDVWATQYERMQETKRKLLETNRNLRTQIKQRLGECLDELDIQE 120

Query:   121 LTGLEQDILDGLKIIHECK 139
             L  LE ++ +  K++ E K
Sbjct:   121 LRRLEDEMENTFKLVRERK 139

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0009886 "post-embryonic morphogenesis" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0010093 "specification of floral organ identity" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

GO:0048441 "petal development" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

GO:0048507 "meristem development" evidence=RCA

UNIPROTKB|Q9ZS26 gglo1 "MADS-box protein, GGLO1" [Gerbera hybrid cultivar (taxid:18101)]

 Score = 317 (116.6 bits), Expect = 1.9e-28, P = 1.9e-28
 Identities = 61/139 (43%), Positives = 90/139 (64%)

Query:     1 MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60
             MGRGK+E+KRIEN +NRQVT+SKR+NG+ KKA+E+T+LCDA VS++I  S+ K +EY SP
Sbjct:     1 MGRGKIEIKRIENTSNRQVTYSKRKNGIIKKAKEITVLCDANVSLVIYGSSGKMYEYCSP 60

Query:    61 STTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEE 120
              T    +LD YQ+     LW + +E +   +  +++ N  ++ ++R   GE +  L  EE
Sbjct:    61 KTNLIDMLDRYQRLSGNKLWDAKHENLQNEIDRIKKENESMQIELRHLKGEDITSLNYEE 120

Query:   121 LTGLEQDILDGLKIIHECK 139
             L   E  + +GL  I E K
Sbjct:   121 LIAYEDALENGLTNIREKK 139

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q03378 GLO "Floral homeotic protein GLOBOSA" [Antirrhinum majus (taxid:4151)]

 Score = 309 (113.8 bits), Expect = 1.3e-27, P = 1.3e-27
 Identities = 60/131 (45%), Positives = 89/131 (67%)

Query:     1 MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60
             MGRGK+E+KRIEN++NRQVT+SKRRNG+ KKA+E+++LCDA VS++I +S+ K HE+ SP
Sbjct:     1 MGRGKIEIKRIENSSNRQVTYSKRRNGIMKKAKEISVLCDAHVSVIIFASSGKMHEFCSP 60

Query:    61 STTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEE 120
             STT   +LD Y K     LW   +E +   +  V++ N  ++ ++R   GE +  L  +E
Sbjct:    61 STTLVDMLDHYHKLSGKRLWDPKHEHLDNEINRVKKENDSMQIELRHLKGEDITTLNYKE 120

Query:   121 LTGLEQDILDG 131
             L  LE  + +G
Sbjct:   121 LMVLEDALENG 131

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2149264 PI "PISTILLATA" [Arabidopsis thaliana (taxid:3702)]

 Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
 Identities = 62/143 (43%), Positives = 91/143 (63%)

Query:     1 MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60
             MGRGK+E+KRIENA NR VTFSKRRNGL KKA+E+T+LCDAKV+++I +S  K  +Y  P
Sbjct:     1 MGRGKIEIKRIENANNRVVTFSKRRNGLVKKAKEITVLCDAKVALIIFASNGKMIDYCCP 60

Query:    61 STTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEE 120
             S     +LD YQK     LW + +E +   +  +++ N  L+ ++R   GE +  L L+ 
Sbjct:    61 SMDLGAMLDQYQKLSGKKLWDAKHENLSNEIDRIKKENDSLQLELRHLKGEDIQSLNLKN 120

Query:   121 LTGLEQDILDGLKII--HECKVI 141
             L  +E  I  GL  +  H+ +++
Sbjct:   121 LMAVEHAIEHGLDKVRDHQMEIL 143

GO:0003677 "DNA binding" evidence=IEA;ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0048481 "ovule development" evidence=RCA

GO:0005737 "cytoplasm" evidence=IDA

TAIR|locus:2177125 AGL15 "AGAMOUS-like 15" [Arabidopsis thaliana (taxid:3702)]

 Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
 Identities = 65/143 (45%), Positives = 89/143 (62%)

Query:     1 MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60
             MGRGK+E+KRIENA +RQVTFSKRR+GL KKAREL++LCDA+V++++ S + K  EY   
Sbjct:     1 MGRGKIEIKRIENANSRQVTFSKRRSGLLKKARELSVLCDAEVAVIVFSKSGKLFEY--S 58

Query:    61 STTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVE----QVNRILKKQIRQRMGESLNDL 116
             ST  KQ L  Y         SS   K  E+   V+    Q++++ +K + Q  G+ LN L
Sbjct:    59 STGMKQTLSRYGNHQ-----SSSASKAEEDCAEVDILKDQLSKLQEKHL-QLQGKGLNPL 112

Query:   117 TLEELTGLEQDILDGLKIIHECK 139
             T +EL  LEQ +   L  + E K
Sbjct:   113 TFKELQSLEQQLYHALITVRERK 135

GO:0003677 "DNA binding" evidence=IEA;ISS;IDA;IPI

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA;NAS;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA;TAS

GO:0060862 "negative regulation of floral organ abscission" evidence=IMP

GO:0010047 "fruit dehiscence" evidence=IMP

GO:0060867 "fruit abscission" evidence=IMP

GO:2000692 "negative regulation of seed maturation" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IGI;IDA

GO:0071365 "cellular response to auxin stimulus" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0009910 "negative regulation of flower development" evidence=IMP

GO:0048577 "negative regulation of short-day photoperiodism, flowering" evidence=IMP

GO:0010262 "somatic embryogenesis" evidence=IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0009793 "embryo development ending in seed dormancy" evidence=IDA;TAS

GO:0045487 "gibberellin catabolic process" evidence=TAS

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009556 "microsporogenesis" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

GO:0052543 "callose deposition in cell wall" evidence=RCA

UNIPROTKB|Q9ZS25 gsqua1 "MADS-box protein, GSQUA1" [Gerbera hybrid cultivar (taxid:18101)]

 Score = 259 (96.2 bits), Expect = 2.6e-22, P = 2.6e-22
 Identities = 56/144 (38%), Positives = 86/144 (59%)

Query:     1 MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60
             MGRGK+++KRIEN  NRQVTFSKRR GL KKA E+++LCDA+V++++ S+  K  EY S 
Sbjct:     1 MGRGKVQLKRIENKINRQVTFSKRRGGLLKKAHEISVLCDAEVALIVFSAKGKLFEY-ST 59

Query:    61 STTTKQLLDLYQKTLRVDLWSSHYE-----KMLENLGAVEQVNRILKKQIRQRMGESLND 115
              +  + +LD Y++   +D      +     +  +    ++    +L++ +R  MGE +  
Sbjct:    60 DSCMENILDRYEQYSNIDRQHVAVDTDSPIRWTQECNKLKSRAELLQRNLRHYMGEDIES 119

Query:   116 LTLEELTGLEQDILDGLKIIHECK 139
             L L E+  LEQ +   LK IH  K
Sbjct:   120 LGLREIQNLEQQLDTALKRIHSKK 143

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2137070 AGL14 "AGAMOUS-like 14" [Arabidopsis thaliana (taxid:3702)]

 Score = 257 (95.5 bits), Expect = 4.3e-22, P = 4.3e-22
 Identities = 62/134 (46%), Positives = 86/134 (64%)

Query:     1 MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60
             M RGK EMKRIENAT+RQVTFSKRRNGL KKA EL++LCDA+V+++I S   K +E+ S 
Sbjct:     1 MVRGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSS 60

Query:    61 STTTKQLLDLYQKTLRVDLWSSH------YEKMLENLGAVEQVNRILKKQIRQRMGESLN 114
             S+  K + + YQK ++ DL S+H       +   E  G   ++   L+   R+ MGE L+
Sbjct:    61 SSIPKTV-ERYQKRIQ-DLGSNHKRNDNSQQSKDETYGLARKIEH-LEISTRKMMGEGLD 117

Query:   115 DLTLEELTGLEQDI 128
               ++EEL  LE  +
Sbjct:   118 ASSIEELQQLENQL 131

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0010048 "vernalization response" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q944S9	MAD16_ORYSJ	No assigned EC number	0.5539	0.8580	0.6205	yes	no
P35632	AP3_ARATH	No assigned EC number	0.5571	0.8641	0.6034	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	162
cd00265	77	cd00265, MADS_MEF2_like, MEF2 (myocyte enhancer fa	9e-38
smart00432	59	smart00432, MADS, MADS domain	4e-30
cd00120	59	cd00120, MADS, MADS: MCM1, Agamous, Deficiens, and	4e-27
cd00266	83	cd00266, MADS_SRF_like, SRF-like/Type I subfamily	2e-22
pfam00319	51	pfam00319, SRF-TF, SRF-type transcription factor (	2e-19
pfam01486	100	pfam01486, K-box, K-box region	3e-12
COG5068	412	COG5068, ARG80, Regulator of arginine metabolism a	2e-08

>gnl|CDD|238165 cd00265, MADS_MEF2_like, MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

 Score =  123 bits (312), Expect = 9e-38
 Identities = 48/79 (60%), Positives = 65/79 (82%), Gaps = 2/79 (2%)

Query: 2  GRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPS 61
          GRGK+E+KRIEN+TNRQVTFSKRRNGL KKA EL++LCDA+V+++I SS+ K +E+ SPS
Sbjct: 1  GRGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEFSSPS 60

Query: 62 TTTKQLLDLYQKTLRVDLW 80
             +++++ YQKT    LW
Sbjct: 61 --MEKIIERYQKTSGSSLW 77

Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 77

>gnl|CDD|197721 smart00432, MADS, MADS domain

 Score =  103 bits (259), Expect = 4e-30
 Identities = 40/59 (67%), Positives = 51/59 (86%)

Query: 2  GRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60
          GR K+E+KRIEN TNRQVTFSKRRNGLFKKA EL++LCDA+V++++ S T K +E+ SP
Sbjct: 1  GRRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFASP 59

Length = 59

>gnl|CDD|238067 cd00120, MADS, MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators

 Score = 96.0 bits (240), Expect = 4e-27
 Identities = 38/59 (64%), Positives = 51/59 (86%)

Query: 2  GRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60
          GRGK+E+KRIEN T+RQVTFSKRRNGLFKKA EL++LCDA+V++++ S + K +E+ S 
Sbjct: 1  GRGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFWSS 59

Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 59

>gnl|CDD|238166 cd00266, MADS_SRF_like, SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

 Score = 85.0 bits (211), Expect = 2e-22
 Identities = 31/60 (51%), Positives = 43/60 (71%)

Query: 2  GRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPS 61
          GR K+++KRIEN   R VTFSKRR GLFKKA EL+ LC A+V++++ S + K + +   S
Sbjct: 1  GRKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWPSS 60

Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 83

>gnl|CDD|109379 pfam00319, SRF-TF, SRF-type transcription factor (DNA-binding and dimerisation domain)

 Score = 75.9 bits (187), Expect = 2e-19
 Identities = 36/51 (70%), Positives = 45/51 (88%)

Query: 9  KRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYIS 59
          KRIEN +NRQVTFSKRRNG+FKKA EL++LCDA+V+++I SST K +EY S
Sbjct: 1  KRIENKSNRQVTFSKRRNGIFKKAHELSVLCDAEVAVIIFSSTGKLYEYSS 51

Length = 51

>gnl|CDD|216525 pfam01486, K-box, K-box region

 Score = 59.1 bits (144), Expect = 3e-12
 Identities = 26/65 (40%), Positives = 39/65 (60%)

Query: 71  YQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEELTGLEQDILD 130
           YQK    DLW S YE + +    +++ N  L+++ R  +GE L  L+L+EL  LEQ + +
Sbjct: 1   YQKLSGNDLWESKYENLQQEAAKLKKQNENLQREQRHLLGEDLGSLSLKELQQLEQQLEN 60

Query: 131 GLKII 135
           GLK I
Sbjct: 61  GLKHI 65

The K-box region is commonly found associated with SRF-type transcription factors see pfam00319. The K-box is a possible coiled-coil structure. Possible role in multimer formation. Length = 100

>gnl|CDD|227400 COG5068, ARG80, Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

 Score = 52.3 bits (125), Expect = 2e-08
 Identities = 23/61 (37%), Positives = 36/61 (59%)

Query: 1   MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60
           +   K+ +  I N T R VTFSKR++G+ KKA EL++L   +V +L+ S     H + +P
Sbjct: 81  VTGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTFTTP 140

Query: 61  S 61
            
Sbjct: 141 K 141

Length = 412

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	162
KOG0014	195	consensus MADS box transcription factor [Transcrip	100.0
cd00265	77	MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-li	100.0
cd00266	83	MADS_SRF_like SRF-like/Type I subfamily of MADS (M	99.97
smart00432	59	MADS MADS domain.	99.97
cd00120	59	MADS MADS: MCM1, Agamous, Deficiens, and SRF (seru	99.96
PF00319	51	SRF-TF: SRF-type transcription factor (DNA-binding	99.94
KOG0015	338	consensus Regulator of arginine metabolism and rel	99.79
COG5068	412	ARG80 Regulator of arginine metabolism and related	99.44
PF01486	100	K-box: K-box region; InterPro: IPR002487 MADS gene	99.44
PRK04098	158	sec-independent translocase; Provisional	94.08
PF05812	118	Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro:	84.71
PHA03155	115	hypothetical protein; Provisional	84.08
PHA03162	135	hypothetical protein; Provisional	83.45
PF10584	23	Proteasome_A_N: Proteasome subunit A N-terminal si	83.4
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	83.34
PF06698	59	DUF1192: Protein of unknown function (DUF1192); In	82.57
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	80.99

>KOG0014 consensus MADS box transcription factor [Transcription]

Probab=100.00  E-value=8e-37  Score=233.71  Aligned_cols=147  Identities=34%  Similarity=0.474  Sum_probs=115.7

Q ss_pred             CCCcccceeEecCCCCcceeccccccchhHhhHHhhhhccccEEEEEecCCCCcccccCCccchHHHHHHHhhhhcccch
Q 031283            1 MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKTLRVDLW   80 (162)
Q Consensus         1 MgR~ki~ik~I~n~~~R~~tf~KR~~gL~KKA~ELs~LC~v~va~ivfsp~gk~~~~~~p~~~v~~ii~ry~~~~~~~~~   80 (162)
                      |||+||+|++|+|+++|++||+|||+||||||+||||||||+||+|||||+|++|+||+|+..+.+++++|...+.....
T Consensus         1 M~R~ki~i~~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCd~eiavIifsp~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~   80 (195)
T KOG0014|consen    1 MGRGKIEIKRIENESSRQVTFSKRRNGLFKKASELSVLCDAEIAVIVFSPSGKLYEFGSSDESVDAVVDRFLNLTEPSRK   80 (195)
T ss_pred             CCCCccceeeccccchhhhhhHHHHhhHHHHHHHHHHhcCCeEEEEEECCCCCccccCCcchhHHHHHHHHHhhhhhhhc
Confidence            99999999999999999999999999999999999999999999999999999999999976699999999876553211


Q ss_pred             h-----hh------hhh--------------hhhhhhHHHHHHHHHH---HHHHhhhcCCCCCCCH-HHHHHHHHHHHHH
Q 031283           81 S-----SH------YEK--------------MLENLGAVEQVNRILK---KQIRQRMGESLNDLTL-EELTGLEQDILDG  131 (162)
Q Consensus        81 ~-----~~------~~~--------------lq~el~klk~~~~~l~---~~~~~~~g~~L~~Ls~-eeL~~Le~~Le~~  131 (162)
                      .     ..      +..              .......++.....++   ...+.+.++++.+++. .+|..++.+++..
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~l~~~~~~l~~~  160 (195)
T KOG0014|consen   81 KKRVNLESFLRNKKLTELVEEEEKEELKLQLKKSLESSLKVDPEDLELLELEQRKLTGEDLQSLSSLNELNSLESQLESS  160 (195)
T ss_pred             ccccchhhHhhhhhhhcccchhhhhhccchhhhhhhhhhhcchhhhhhhHHHHHHHhccccccCCHHHHhcchhhHHHHh
Confidence            0     00      000              1111222222223322   2246777899999999 9999999999999


Q ss_pred             HHHHHHHHHhhhhhhh
Q 031283          132 LKIIHECKVIKPYTLC  147 (162)
Q Consensus       132 L~~ir~RK~~l~~~~~  147 (162)
                      +..++..+...+..+.
T Consensus       161 ~~~~~~~~~~~~~~~~  176 (195)
T KOG0014|consen  161 LHNSRSSKSKPLSDSN  176 (195)
T ss_pred             hcCCCCCCCcCCcchh
Confidence            9999998877665554

>cd00265 MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

Probab=100.00  E-value=1.2e-34  Score=191.26  Aligned_cols=76  Identities=62%  Similarity=0.949  Sum_probs=72.6

Q ss_pred             CCcccceeEecCCCCcceeccccccchhHhhHHhhhhccccEEEEEecCCCCcccccCCccchHHHHHHHhhhhcccc
Q 031283            2 GRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKTLRVDL   79 (162)
Q Consensus         2 gR~ki~ik~I~n~~~R~~tf~KR~~gL~KKA~ELs~LC~v~va~ivfsp~gk~~~~~~p~~~v~~ii~ry~~~~~~~~   79 (162)
                      ||+||+|++|+|+.+|++||+||++||||||.|||+||||+||+|||||+|++|+|++|+  +.+||+||.+.++.+.
T Consensus         1 gr~ki~i~~i~~~~~r~~tf~kR~~gl~kKa~Els~Lc~~~v~lvv~sp~gk~~~f~s~s--~~~vl~ry~~~~~~~~   76 (77)
T cd00265           1 GRGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEFSSPS--MEKIIERYQKTSGSSL   76 (77)
T ss_pred             CCCcceeEEecCccHHHHHHHHhhhhhhhcceeheeccCCceeEEEEcCCCceEEecCCC--HHHHHHHHHhcccccc
Confidence            899999999999999999999999999999999999999999999999999999999998  6899999999877543

Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>cd00266 MADS_SRF_like SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

Probab=99.97  E-value=5.6e-32  Score=181.07  Aligned_cols=75  Identities=41%  Similarity=0.684  Sum_probs=71.5

Q ss_pred             CCcccceeEecCCCCcceeccccccchhHhhHHhhhhccccEEEEEecCCCCcccccCCccchHHHHHHHhhhhcc
Q 031283            2 GRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKTLRV   77 (162)
Q Consensus         2 gR~ki~ik~I~n~~~R~~tf~KR~~gL~KKA~ELs~LC~v~va~ivfsp~gk~~~~~~p~~~v~~ii~ry~~~~~~   77 (162)
                      ||+||+|++|+|+.+|++||+||+.||||||+||||||||+||+|||||+|+.+.||+++. +..++++|...+..
T Consensus         1 gr~Ki~i~~I~~~~~R~~tf~KRk~gl~kKa~ELs~Lc~~~v~~iv~sp~~~~~~~~~~~~-~~~~l~~~~~~~~~   75 (83)
T cd00266           1 GRKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWPSSE-VEGVISRFEVLSAL   75 (83)
T ss_pred             CCccceeEEeeccchhhhhHHHhhhhHHHHHHHHHHhhCCcEEEEEECCCCCcceecCcHH-HHHHHHHHhhcCHh
Confidence            8999999999999999999999999999999999999999999999999999999998875 89999999987663

Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>smart00432 MADS MADS domain

Probab=99.97  E-value=1.5e-31  Score=167.38  Aligned_cols=59  Identities=68%  Similarity=1.042  Sum_probs=58.2

Q ss_pred             CCcccceeEecCCCCcceeccccccchhHhhHHhhhhccccEEEEEecCCCCcccccCC
Q 031283            2 GRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP   60 (162)
Q Consensus         2 gR~ki~ik~I~n~~~R~~tf~KR~~gL~KKA~ELs~LC~v~va~ivfsp~gk~~~~~~p   60 (162)
                      ||+||+|++|+|+++|++||+||++||+|||+|||+||||+||+|||||+|++|.||+|
T Consensus         1 gR~Ki~i~~I~~~~~R~~tf~kRk~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~p   59 (59)
T smart00432        1 GRRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFASP   59 (59)
T ss_pred             CCCcceeEEeeCcchhhhhhHhhhhhHHHHHHHHhhccCCeEEEEEECCCCCeeeccCC
Confidence            89999999999999999999999999999999999999999999999999999999987

>cd00120 MADS MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators

Probab=99.96  E-value=7.4e-31  Score=164.31  Aligned_cols=59  Identities=64%  Similarity=1.014  Sum_probs=57.9

Q ss_pred             CCcccceeEecCCCCcceeccccccchhHhhHHhhhhccccEEEEEecCCCCcccccCC
Q 031283            2 GRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP   60 (162)
Q Consensus         2 gR~ki~ik~I~n~~~R~~tf~KR~~gL~KKA~ELs~LC~v~va~ivfsp~gk~~~~~~p   60 (162)
                      ||+||+|++|+|+..|++||+||++||+|||+|||+||||+||+|||||+|+++.||+|
T Consensus         1 gr~Ki~i~~I~~~~~R~~tf~kR~~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~~   59 (59)
T cd00120           1 GRGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFWSS   59 (59)
T ss_pred             CCccceeEEeeCcchhhhhHHHHhchHHHhhhhheeccCCcEEEEEECCCCCcccccCC
Confidence            79999999999999999999999999999999999999999999999999999999976

Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>PF00319 SRF-TF: SRF-type transcription factor (DNA-binding and dimerisation domain); InterPro: IPR002100 Human serum response factor (SRF) is a ubiquitous nuclear protein important for cell proliferation and differentiation

Probab=99.94  E-value=1.3e-28  Score=149.35  Aligned_cols=51  Identities=51%  Similarity=0.812  Sum_probs=46.8

Q ss_pred             eEecCCCCcceeccccccchhHhhHHhhhhccccEEEEEecCCCCcccccC
Q 031283            9 KRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYIS   59 (162)
Q Consensus         9 k~I~n~~~R~~tf~KR~~gL~KKA~ELs~LC~v~va~ivfsp~gk~~~~~~   59 (162)
                      |+|+|+..|++||+||++||||||.|||+||||+||+|||||+|++|+|++
T Consensus         1 K~I~n~~~R~~tf~KRk~gL~KKa~ELs~LC~~~v~~iv~~~~g~~~~f~s   51 (51)
T PF00319_consen    1 KRIENKSRRKVTFSKRKKGLFKKASELSTLCGVDVALIVFSPDGKLYTFPS   51 (51)
T ss_dssp             S--SSHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEEETTSEEEEEES
T ss_pred             CCccchhHhHhHHHHHHhhhhhccceeeeecCCeEEEEEECCCCCEEEecC
Confidence            579999999999999999999999999999999999999999999999985

SRF function is essential for transcriptional regulation of numerous growth-factor-inducible genes, such as c-fos oncogene and muscle-specific actin genes. A core domain of around 90 amino acids is sufficient for the activities of DNA-binding, dimerisation and interaction with accessory factors. Within the core is a DNA-binding region, designated the MADS box [], that is highly similar to many eukaryotic regulatory proteins: among these are MCM1, the regulator of cell type-specific genes in fission yeast; DSRF, a Drosophila trachea development factor; the MEF2 family of myocyte-specific enhancer factors; and the Agamous and Deficiens families of plant homeotic proteins. In SRF, the MADS box has been shown to be involved in DNA-binding and dimerisation []. Proteins belonging to the MADS family function as dimers, the primary DNA-binding element of which is an anti-parallel coiled coil of two amphipathic alpha-helices, one from each subunit. The DNA wraps around the coiled coil allowing the basic N-termini of the helices to fit into the DNA major groove. The chain extending from the helix N-termini reaches over the DNA backbone and penetrates into the minor groove. A 4-stranded, anti-parallel beta-sheet packs against the coiled-coil face opposite the DNA and is the central element of the dimerisation interface. The MADS-box domain is commonly found associated with K-box region see IPR002487 from INTERPRO ; GO: 0003677 DNA binding, 0046983 protein dimerization activity; PDB: 1MNM_B 1N6J_A 1TQE_S 3MU6_D 3P57_I 1EGW_A 1C7U_B 3KOV_A 1HBX_A 1K6O_C ....

>KOG0015 consensus Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

Probab=99.79  E-value=2.4e-20  Score=147.86  Aligned_cols=75  Identities=37%  Similarity=0.546  Sum_probs=66.4

Q ss_pred             CCcccceeEecCCCCcceeccccccchhHhhHHhhhhccccEEEEEecCCCCcccccCCcc-------chHHHHHHHhhh
Q 031283            2 GRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPST-------TTKQLLDLYQKT   74 (162)
Q Consensus         2 gR~ki~ik~I~n~~~R~~tf~KR~~gL~KKA~ELs~LC~v~va~ivfsp~gk~~~~~~p~~-------~v~~ii~ry~~~   74 (162)
                      ||+||+|++|+|+..|.+||+|||.|+||||+|||||+|.+|-++|.|++|.+|+|+.|--       +=+.+|....+.
T Consensus        63 gr~kik~eyIenK~rR~~tFSKRK~GImKKAyELs~LTGtqVllLVaSEtGhVyTFaTpKLep~i~s~~Gk~lIq~cLn~  142 (338)
T KOG0015|consen   63 GRVKIKMEYIENKLRRYVTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATPKLEPMITSDEGKALIQACLNA  142 (338)
T ss_pred             ceeeccchhhcccceeeeeehhhhhhhHHHHHHhhhcccceEEEEEEecCcceEEeccccccccccchhhHHHHHHHhcC
Confidence            7999999999999999999999999999999999999999999999999999999999863       124566655555


Q ss_pred             hc
Q 031283           75 LR   76 (162)
Q Consensus        75 ~~   76 (162)
                      ++
T Consensus       143 pd  144 (338)
T KOG0015|consen  143 PD  144 (338)
T ss_pred             CC
Confidence            54

>COG5068 ARG80 Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

Probab=99.44  E-value=4.6e-14  Score=116.69  Aligned_cols=61  Identities=38%  Similarity=0.586  Sum_probs=60.0

Q ss_pred             CCCcccceeEecCCCCcceeccccccchhHhhHHhhhhccccEEEEEecCCCCcccccCCc
Q 031283            1 MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPS   61 (162)
Q Consensus         1 MgR~ki~ik~I~n~~~R~~tf~KR~~gL~KKA~ELs~LC~v~va~ivfsp~gk~~~~~~p~   61 (162)
                      |||+|+.|.+|+|+.+|.+||.||+.|++|||.||++|.|.+|.++|.|.+|.++.|+.|.
T Consensus        81 ~~~~~~~is~i~nk~~r~vtf~Krk~gI~kka~ElsvLt~~~vl~lvise~g~v~tf~tp~  141 (412)
T COG5068          81 VTGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTFTTPK  141 (412)
T ss_pred             cccccCCcccccCcccccchhhhhhhhhhhhhhhhhhccCCceEEEEecCCCceeeecCCc
Confidence            7899999999999999999999999999999999999999999999999999999999987

>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development

Probab=99.44  E-value=3.1e-13  Score=93.34  Aligned_cols=79  Identities=33%  Similarity=0.488  Sum_probs=73.8

Q ss_pred             HhhhhcccchhhhhhhhhhhhhHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc
Q 031283           71 YQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEELTGLEQDILDGLKIIHECKVIKPYTLCAS  149 (162)
Q Consensus        71 y~~~~~~~~~~~~~~~lq~el~klk~~~~~l~~~~~~~~g~~L~~Ls~eeL~~Le~~Le~~L~~ir~RK~~l~~~~~~~  149 (162)
                      |...++.+.+..+.+.++.++.+++.+++.++..+++++|++|++||++||..||.+|+.+|..||.||.+++.+++..
T Consensus         1 Y~~~~~~~~~~~~~e~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~   79 (100)
T PF01486_consen    1 YQKQSGTDLWDSQHEELQQEIAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLESALKRVRSRKDQLLMEQIEE   79 (100)
T ss_pred             CCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence            5666777888899999999999999999999999999999999999999999999999999999999999999887754

The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PRK04098 sec-independent translocase; Provisional

Probab=94.08  E-value=0.07  Score=39.66  Aligned_cols=85  Identities=16%  Similarity=0.213  Sum_probs=50.5

Q ss_pred             cEEEEEecCCCCcccccCCccchHHHHHHHhhhhcc--cch--hhhhhhhhhhhhHHHHHHHHHHHHHHhhhcCCCCCCC
Q 031283           42 KVSILICSSTAKAHEYISPSTTTKQLLDLYQKTLRV--DLW--SSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLT  117 (162)
Q Consensus        42 ~va~ivfsp~gk~~~~~~p~~~v~~ii~ry~~~~~~--~~~--~~~~~~lq~el~klk~~~~~l~~~~~~~~g~~L~~Ls  117 (162)
                      =||+||||| ++++....   .+...+..|++....  +..  +..+..++++..+.++..+.....++       ..++
T Consensus        14 vVaLlvfGP-~KLP~~~r---~lGk~ir~~K~~~~~~k~~l~~Ei~~~elk~e~~k~k~~l~~~~~~l~-------~~~~   82 (158)
T PRK04098         14 VVAIIFLGP-DKLPQAMV---DIAKFFKAVKKTINDAKSTLDKEINIEEIKEEALKYKKEFESAVESLK-------KKLK   82 (158)
T ss_pred             HHHHhhcCc-hHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH-------hccC
Confidence            478999999 68887764   366777777776542  111  12334556666665555444333332       2377


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 031283          118 LEELTGLEQDILDGLKIIHE  137 (162)
Q Consensus       118 ~eeL~~Le~~Le~~L~~ir~  137 (162)
                      +++|.++...+......+.+
T Consensus        83 ~eel~~~~~~~~~~~~~~~~  102 (158)
T PRK04098         83 FEELDDLKITAENEIKSIQD  102 (158)
T ss_pred             hHHHHHHhhhhhhcchhHHH
Confidence            88888877655554444443

>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins

Probab=84.71  E-value=10  Score=26.83  Aligned_cols=59  Identities=22%  Similarity=0.259  Sum_probs=44.3

Q ss_pred             hhhhhhhhhhHHHHHHHHHHHHHHhhhc----CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 031283           83 HYEKMLENLGAVEQVNRILKKQIRQRMG----ESLNDLTLEELTGLEQDILDGLKIIHECKVI  141 (162)
Q Consensus        83 ~~~~lq~el~klk~~~~~l~~~~~~~~g----~~L~~Ls~eeL~~Le~~Le~~L~~ir~RK~~  141 (162)
                      ..+.|..++.+|+.+|..|.+.++.--|    .+=.-|+..+=+.+....-.+|...-.+|.+
T Consensus         4 t~EeLaaeL~kLqmENk~LKkkl~~~~~p~~~p~~~~LTp~qKe~~I~s~~~~Lss~A~~KIe   66 (118)
T PF05812_consen    4 TMEELAAELQKLQMENKALKKKLRQSVGPGPSPDDEVLTPAQKEAMITSAVSKLSSQASKKIE   66 (118)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTT---S-TT--B--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCccccChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4578999999999999999998888776    5667889999998888888877766666533

; PDB: 2OA5_B 2H3R_D.

>PHA03155 hypothetical protein; Provisional

Probab=84.08  E-value=11  Score=26.42  Aligned_cols=59  Identities=20%  Similarity=0.213  Sum_probs=45.6

Q ss_pred             hhhhhhhhhhhHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 031283           82 SHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEELTGLEQDILDGLKIIHECKV  140 (162)
Q Consensus        82 ~~~~~lq~el~klk~~~~~l~~~~~~~~g~~L~~Ls~eeL~~Le~~Le~~L~~ir~RK~  140 (162)
                      ...+.|..++.+|+-+|..|.+.+++--+++=.-|+..|=..+......+|...-.+|.
T Consensus         8 ~tvEeLaaeL~kL~~ENK~LKkkl~~~~~p~d~~LT~~qKea~I~s~v~~Lt~~A~~KI   66 (115)
T PHA03155          8 ADVEELEKELQKLKIENKALKKKLLQHGNPEDELLTPAQKDAIINSLVNKLTKKAEEKI   66 (115)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHccCCCCccccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34578999999999999999988866555444668999988888888887776655553

>PHA03162 hypothetical protein; Provisional

Probab=83.45  E-value=12  Score=26.90  Aligned_cols=59  Identities=17%  Similarity=0.173  Sum_probs=45.4

Q ss_pred             hhhhhhhhhhhHHHHHHHHHHHHHHhhhcCC----CCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 031283           82 SHYEKMLENLGAVEQVNRILKKQIRQRMGES----LNDLTLEELTGLEQDILDGLKIIHECKV  140 (162)
Q Consensus        82 ~~~~~lq~el~klk~~~~~l~~~~~~~~g~~----L~~Ls~eeL~~Le~~Le~~L~~ir~RK~  140 (162)
                      ...+.|..++.+|+.+|..|.+.++.-.|.+    =..|+..|=+.+....-.+|...-.+|.
T Consensus        13 ~tmEeLaaeL~kLqmENK~LKkkl~~~~~~~~~p~d~~LTp~qKea~I~s~v~~Lts~A~kKI   75 (135)
T PHA03162         13 PTMEDLAAEIAKLQLENKALKKKIKEGTDDDPLPGDPILTPAAKEAMIGAATAALTRQAAKKI   75 (135)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3457899999999999999998887766654    2348999988888888877776665553

>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3

Probab=83.40  E-value=0.18  Score=25.32  Aligned_cols=13  Identities=23%  Similarity=0.250  Sum_probs=10.2

Q ss_pred             EEEEecCCCCccc
Q 031283           44 SILICSSTAKAHE   56 (162)
Q Consensus        44 a~ivfsp~gk~~~   56 (162)
                      .+.+|||+|+++.
T Consensus         4 ~~t~FSp~Grl~Q   16 (23)
T PF10584_consen    4 SITTFSPDGRLFQ   16 (23)
T ss_dssp             STTSBBTTSSBHH
T ss_pred             CceeECCCCeEEe
Confidence            3457999999874

4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=83.34  E-value=16  Score=27.02  Aligned_cols=55  Identities=18%  Similarity=0.167  Sum_probs=37.0

Q ss_pred             hhhhhhhhHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 031283           85 EKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEELTGLEQDILDGLKIIHECKV  140 (162)
Q Consensus        85 ~~lq~el~klk~~~~~l~~~~~~~~g~~L~~Ls~eeL~~Le~~Le~~L~~ir~RK~  140 (162)
                      +.+...+..++.++..++..+..+.+ +-...+.+|...++..........+.||.
T Consensus       112 ~el~~~i~~l~~e~~~l~~kL~~l~~-~~~~vs~ee~~~~~~~~~~~~k~w~kRKr  166 (169)
T PF07106_consen  112 EELREEIEELEEEIEELEEKLEKLRS-GSKPVSPEEKEKLEKEYKKWRKEWKKRKR  166 (169)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45556666666666666666655554 34447788888888888877777777774

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length

Probab=82.57  E-value=3.2  Score=25.73  Aligned_cols=34  Identities=21%  Similarity=0.245  Sum_probs=27.9

Q ss_pred             hhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 031283          107 QRMGESLNDLTLEELTGLEQDILDGLKIIHECKV  140 (162)
Q Consensus       107 ~~~g~~L~~Ls~eeL~~Le~~Le~~L~~ir~RK~  140 (162)
                      +..|.+|+.||++||.+-...|+.-+.+++.-..
T Consensus        12 ~~ig~dLs~lSv~EL~~RIa~L~aEI~R~~~~~~   45 (59)
T PF06698_consen   12 HEIGEDLSLLSVEELEERIALLEAEIARLEAAIA   45 (59)
T ss_pred             cccCCCchhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3568899999999999999888888887776543

The function of this family is unknown.

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=80.99  E-value=14  Score=27.32  Aligned_cols=59  Identities=14%  Similarity=0.160  Sum_probs=45.9

Q ss_pred             hhhhhhhhhhhhHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 031283           81 SSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEELTGLEQDILDGLKIIHECKVIKP  143 (162)
Q Consensus        81 ~~~~~~lq~el~klk~~~~~l~~~~~~~~g~~L~~Ls~eeL~~Le~~Le~~L~~ir~RK~~l~  143 (162)
                      +..+..+++++..++.++..++.++..+.    ..++.+||......|+..+..+.+|-..+-
T Consensus        78 d~ei~~L~~el~~l~~~~k~l~~eL~~L~----~~~t~~el~~~i~~l~~e~~~l~~kL~~l~  136 (169)
T PF07106_consen   78 DAEIKELREELAELKKEVKSLEAELASLS----SEPTNEELREEIEELEEEIEELEEKLEKLR  136 (169)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44567777888888888777777765554    457899999999999999999998887654

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	162
1tqe_P	93	Mechanism Of Recruitment Of Class Ii Histone Deacet		7e-11
3mu6_A	71	Inhibiting The Binding Of Class Iia Histone Deacety		9e-11
1egw_A	77	Crystal Structure Of Mef2a Core Bound To Dna Length		1e-10
3kov_A	90	Structure Of Mef2a Bound To Dna Reveals A Completel		1e-10
1c7u_A	85	Complex Of The Dna Binding Core Domain Of The Trans		1e-10
1n6j_A	93	Structural Basis Of Sequence-Specific Recruitment O		4e-10
1mnm_A	100	Yeast Matalpha2MCM1DNA TERNARY TRANSCRIPTION COMPLE		5e-09
1srs_A	92	Serum Response Factor (Srf) Core Complexed With Spe		3e-06
1k6o_B	103	Crystal Structure Of A Ternary Sap-1SRFC-Fos Sre Dn		3e-06

>pdb|1TQE|P Chain P, Mechanism Of Recruitment Of Class Ii Histone Deacetylases By Myocyte Enhancer Factor-2 Length = 93

Iteration: 1
 Score = 63.2 bits (152), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 28/59 (47%), Positives = 44/59 (74%)
Query: 1  MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYIS 59
          MGR K+++ RI +  NRQVTF+KR+ GL KKA EL++LCD +++++I +S  +  +Y S
Sbjct: 1  MGRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQYAS 59

>pdb|3MU6|A Chain A, Inhibiting The Binding Of Class Iia Histone Deacetylases To Myocyte Enhancer Factor-2 By Small Molecules Length = 71

Iteration: 1
 Score = 62.8 bits (151), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 44/58 (75%)
Query: 2  GRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYIS 59
          GR K+++ RI +  NRQVTF+KR+ GL KKA EL++LCD +++++I +S+ K  +Y S
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAS 58

>pdb|1EGW|A Chain A, Crystal Structure Of Mef2a Core Bound To Dna Length = 77

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 44/58 (75%)
Query: 2  GRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYIS 59
          GR K+++ RI +  NRQVTF+KR+ GL KKA EL++LCD +++++I +S+ K  +Y S
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAS 58

>pdb|3KOV|A Chain A, Structure Of Mef2a Bound To Dna Reveals A Completely Folded Mads-BoxMEF2 DOMAIN THAT RECOGNIZES DNA AND RECRUITS Transcription Co-Factors Length = 90

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 44/58 (75%)
Query: 2  GRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYIS 59
          GR K+++ RI +  NRQVTF+KR+ GL KKA EL++LCD +++++I +S+ K  +Y S
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAS 58

>pdb|1C7U|A Chain A, Complex Of The Dna Binding Core Domain Of The Transcription Factor Mef2a With A 20mer Oligonucleotide Length = 85

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 44/58 (75%)
Query: 2  GRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYIS 59
          GR K+++ RI +  NRQVTF+KR+ GL KKA EL++L DA+++++I +S+ K  +Y S
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLADAEIALIIFNSSNKLFQYAS 58

>pdb|1N6J|A Chain A, Structural Basis Of Sequence-Specific Recruitment Of Histone Deacetylases By Myocyte Enhancer Factor-2 Length = 93

Iteration: 1
 Score = 60.5 bits (145), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 27/58 (46%), Positives = 43/58 (74%)
Query: 2  GRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYIS 59
          GR K+++ RI +  NRQVTF+KR+ GL KKA EL++LCD +++++I +S  +  +Y S
Sbjct: 1  GRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQYAS 58

>pdb|1MNM|A Chain A, Yeast Matalpha2MCM1DNA TERNARY TRANSCRIPTION COMPLEX Crystal Structure Length = 100

Iteration: 1
 Score = 57.0 bits (136), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 27/58 (46%), Positives = 40/58 (68%)
Query: 3  RGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60
          R K+E+K IEN T R VTFSKR++G+ KKA EL++L   +V +L+ S T   + + +P
Sbjct: 18 RRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTP 75

>pdb|1SRS|A Chain A, Serum Response Factor (Srf) Core Complexed With Specific Sre Dna Length = 92

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 36/58 (62%)
Query: 2  GRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYIS 59
          GR K++M+ I+N   R  TFSKR+ G+ KKA EL+ L   +V +L+ S T   + + +
Sbjct: 11 GRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFAT 68

>pdb|1K6O|B Chain B, Crystal Structure Of A Ternary Sap-1SRFC-Fos Sre Dna Complex Length = 103

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 36/58 (62%)
Query: 2  GRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYIS 59
          GR K++M+ I+N   R  TFSKR+ G+ KKA EL+ L   +V +L+ S T   + + +
Sbjct: 10 GRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFAT 67

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	162
1mnm_A	100	Protein (MCM1 transcriptional regulator); transcri	2e-33
3p57_A	90	Myocyte-specific enhancer factor 2A; protein-DNA c	1e-32
1egw_A	77	MADS box transcription enhancer factor 2, polypept	1e-32
1hbx_A	92	SRF, serum response factor; gene regulation, trans	5e-32
1k6o_B	103	SRF, serum response factor; protein/DNA complex, t	1e-31

>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1 Length = 100

 Score =  113 bits (283), Expect = 2e-33
 Identities = 27/73 (36%), Positives = 44/73 (60%), Gaps = 2/73 (2%)

Query: 1  MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60
            R K+E+K IEN T R VTFSKR++G+ KKA EL++L   +V +L+ S T   + + +P
Sbjct: 16 KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTP 75

Query: 61 STTTKQLLDLYQK 73
              + ++   + 
Sbjct: 76 K--FEPIVTQQEG 86

>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A Length = 90

 Score =  110 bits (277), Expect = 1e-32
 Identities = 30/84 (35%), Positives = 52/84 (61%), Gaps = 2/84 (2%)

Query: 2  GRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPS 61
          GR K+++ RI +  NRQVTF+KR+ GL KKA EL++LCD +++++I +S+ K  +Y S  
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD 60

Query: 62 TTTKQLLDLYQKTLRVDLWSSHYE 85
              ++L  Y +        ++ +
Sbjct: 61 --MDKVLLKYTEYNEPHESRTNSD 82

>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A* Length = 77

 Score =  110 bits (276), Expect = 1e-32
 Identities = 30/72 (41%), Positives = 49/72 (68%), Gaps = 2/72 (2%)

Query: 2  GRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPS 61
          GR K+++ RI +  NRQVTF+KR+ GL KKA EL++LCD +++++I +S+ K  +Y S  
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD 60

Query: 62 TTTKQLLDLYQK 73
              ++L  Y +
Sbjct: 61 --MDKVLLKYTE 70

>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A* Length = 92

 Score =  109 bits (273), Expect = 5e-32
 Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 2/73 (2%)

Query: 1  MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60
           GR K++M+ I+N   R  TFSKR+ G+ KKA EL+ L   +V +L+ S T   + + + 
Sbjct: 10 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATR 69

Query: 61 STTTKQLLDLYQK 73
              + ++     
Sbjct: 70 K--LQPMITSETG 80

>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1 Length = 103

 Score =  108 bits (271), Expect = 1e-31
 Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 2/73 (2%)

Query: 1  MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60
           GR K++M+ I+N   R  TFSKR+ G+ KKA EL+ L   +V +L+ S T   + + + 
Sbjct: 9  RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATR 68

Query: 61 STTTKQLLDLYQK 73
              + ++     
Sbjct: 69 K--LQPMITSETG 79

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	162
1egw_A	77	MADS box transcription enhancer factor 2, polypept	100.0
3p57_A	90	Myocyte-specific enhancer factor 2A; protein-DNA c	100.0
1mnm_A	100	Protein (MCM1 transcriptional regulator); transcri	100.0
1hbx_A	92	SRF, serum response factor; gene regulation, trans	100.0
1k6o_B	103	SRF, serum response factor; protein/DNA complex, t	100.0
2l16_A	78	SEC-independent protein translocase protein tatad;	80.18

>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*

Probab=100.00  E-value=5.9e-38  Score=205.16  Aligned_cols=73  Identities=41%  Similarity=0.692  Sum_probs=69.1

Q ss_pred             CCcccceeEecCCCCcceeccccccchhHhhHHhhhhccccEEEEEecCCCCcccccCCccchHHHHHHHhhhhc
Q 031283            2 GRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKTLR   76 (162)
Q Consensus         2 gR~ki~ik~I~n~~~R~~tf~KR~~gL~KKA~ELs~LC~v~va~ivfsp~gk~~~~~~p~~~v~~ii~ry~~~~~   76 (162)
                      ||+||+|++|+|+++|++||+|||+||||||+||||||||+||+|||||+|++|+|++|+  +++|++||...++
T Consensus         1 GR~Ki~ik~I~n~~~R~vTfsKRr~GL~KKA~ELsvLCdaeV~livfs~~gk~~~~~s~~--~~~il~ry~~~~~   73 (77)
T 1egw_A            1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD--MDKVLLKYTEYNE   73 (77)
T ss_dssp             CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESSC--HHHHHHHHHHC--
T ss_pred             CCceeeeEEecCchHHHHHHHHhHHHHHHHHHHHhcccCCeEEEEEECCCCCEeeCCCCC--HHHHHHHHHhccC
Confidence            899999999999999999999999999999999999999999999999999999999885  8999999997654

>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A

Probab=100.00  E-value=1.4e-37  Score=208.24  Aligned_cols=75  Identities=40%  Similarity=0.668  Sum_probs=71.6

Q ss_pred             CCcccceeEecCCCCcceeccccccchhHhhHHhhhhccccEEEEEecCCCCcccccCCccchHHHHHHHhhhhccc
Q 031283            2 GRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKTLRVD   78 (162)
Q Consensus         2 gR~ki~ik~I~n~~~R~~tf~KR~~gL~KKA~ELs~LC~v~va~ivfsp~gk~~~~~~p~~~v~~ii~ry~~~~~~~   78 (162)
                      ||+||+|++|+|+++|++||+|||+||||||.||||||||+||+|||||+|++|+|++|+  +.+||+||...++..
T Consensus         1 GR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valiifs~~gk~~~f~s~~--~~~il~rY~~~~~~~   75 (90)
T 3p57_A            1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD--MDKVLLKYTEYNEPH   75 (90)
T ss_dssp             CCSCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEESSC--HHHHHHHHHHCCSCC
T ss_pred             CCCcceeEEecCchHHHHHHHHhhhhHHHHHHHHHhccCCceEEEEECCCCCEEEeCCCC--HHHHHHHHHhcCccc
Confidence            899999999999999999999999999999999999999999999999999999999975  899999999877643

>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1

Probab=100.00  E-value=2.6e-36  Score=205.33  Aligned_cols=71  Identities=38%  Similarity=0.564  Sum_probs=68.1

Q ss_pred             CCCcccceeEecCCCCcceeccccccchhHhhHHhhhhccccEEEEEecCCCCcccccCCccchHHHHHHHhh
Q 031283            1 MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQK   73 (162)
Q Consensus         1 MgR~ki~ik~I~n~~~R~~tf~KR~~gL~KKA~ELs~LC~v~va~ivfsp~gk~~~~~~p~~~v~~ii~ry~~   73 (162)
                      |||+||+|++|+|+.+|++||+|||+||||||+||||||||+||+|||||+|++|+|++|+  +..|+++|..
T Consensus        16 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~sps--~~~il~r~~G   86 (100)
T 1mnm_A           16 KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPK--FEPIVTQQEG   86 (100)
T ss_dssp             CCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECTT--TTHHHHSHHH
T ss_pred             CCccceeeEEecCcchhhhhhhHhhhhHHHHHHHHHHhcCCcEEEEEecCCCCcceecCCC--HHHHHHHhhC
Confidence            8999999999999999999999999999999999999999999999999999999999997  6689988864

>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*

Probab=100.00  E-value=3.5e-36  Score=202.19  Aligned_cols=71  Identities=32%  Similarity=0.484  Sum_probs=67.4

Q ss_pred             CCCcccceeEecCCCCcceeccccccchhHhhHHhhhhccccEEEEEecCCCCcccccCCccchHHHHHHHhh
Q 031283            1 MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQK   73 (162)
Q Consensus         1 MgR~ki~ik~I~n~~~R~~tf~KR~~gL~KKA~ELs~LC~v~va~ivfsp~gk~~~~~~p~~~v~~ii~ry~~   73 (162)
                      |||+||+|++|+|+++|++||+|||+||||||+||||||||+||+|||||+|++|+|++|+  +..+|++|..
T Consensus        10 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~V~livfs~~gk~~~f~s~~--~~~~i~~~~G   80 (92)
T 1hbx_A           10 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRK--LQPMITSETG   80 (92)
T ss_dssp             CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTSCEEEEECGG--GGGGTSSHHH
T ss_pred             CCcceEEEEEecChhHHHHHHHHhhhhHHHHHHHHHhhcCCceEEEEECCCCCEEEecCCC--HHHHHhhhcc
Confidence            9999999999999999999999999999999999999999999999999999999999997  6788886643

>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1

Probab=100.00  E-value=1.7e-35  Score=202.46  Aligned_cols=69  Identities=33%  Similarity=0.503  Sum_probs=66.2

Q ss_pred             CCCcccceeEecCCCCcceeccccccchhHhhHHhhhhccccEEEEEecCCCCcccccCCccchHHHHHHH
Q 031283            1 MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLY   71 (162)
Q Consensus         1 MgR~ki~ik~I~n~~~R~~tf~KR~~gL~KKA~ELs~LC~v~va~ivfsp~gk~~~~~~p~~~v~~ii~ry   71 (162)
                      |||+||+|++|+|+.+|++||+|||+||||||+||||||||+||+|||||+|++|+|++|+  +..+|+++
T Consensus         9 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~s~~--~~~vi~~~   77 (103)
T 1k6o_B            9 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRK--LQPMITSE   77 (103)
T ss_dssp             CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSCEEEEECGG--GGGGTSSH
T ss_pred             CCcceeEEEEecCchHHHHhHhHhhHhHHHHHHHHHhhhCCceEEEEEeCCCCeeeecCcc--HHHHHHhh
Confidence            9999999999999999999999999999999999999999999999999999999999997  67888764

>2l16_A SEC-independent protein translocase protein tatad; membrane protein, protein transport; NMR {Bacillus subtilis}

Probab=80.18  E-value=0.09  Score=33.63  Aligned_cols=30  Identities=13%  Similarity=0.226  Sum_probs=23.2

Q ss_pred             EEEEEecCCCCcccccCCccchHHHHHHHhhhhc
Q 031283           43 VSILICSSTAKAHEYISPSTTTKQLLDLYQKTLR   76 (162)
Q Consensus        43 va~ivfsp~gk~~~~~~p~~~v~~ii~ry~~~~~   76 (162)
                      ||+|||+| +|++..+.   ++.+.+..|++...
T Consensus        16 VaLlvfGp-kkLP~l~r---~lGk~ir~fK~~~~   45 (78)
T 2l16_A           16 IALIIFGP-SKLPEIGR---AAGRTLLEFKSATK   45 (78)
T ss_dssp             HHHHHSCT-TTHHHHHH---HHHHHHHHHHHHHH
T ss_pred             HHhheeCc-cHhHHHHH---HHHHHHHHHHHHHH
Confidence            78999999 68888765   36778888887654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	162
d1egwa_	71	d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {	7e-31
d1srsa_	84	d.88.1.1 (A:) Serum response factor (SRF) core {Hu	6e-30
d1mnma_	85	d.88.1.1 (A:) MCM1 transcriptional regulator {Bake	7e-30

>d1egwa_ d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Myocyte enhancer factor Mef2a core
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  104 bits (261), Expect = 7e-31
 Identities = 30/72 (41%), Positives = 49/72 (68%), Gaps = 2/72 (2%)

Query: 2  GRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPS 61
          GR K+++ RI +  NRQVTF+KR+ GL KKA EL++LCD +++++I +S+ K  +Y S  
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD 60

Query: 62 TTTKQLLDLYQK 73
              ++L  Y +
Sbjct: 61 --MDKVLLKYTE 70

>d1srsa_ d.88.1.1 (A:) Serum response factor (SRF) core {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Serum response factor (SRF) core
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (256), Expect = 6e-30
 Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 4/79 (5%)

Query: 1  MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60
           GR K++M+ I+N   R  TFSKR+ G+ KKA EL+ L   +V +L+ S T   + + + 
Sbjct: 2  RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATR 61

Query: 61 ST----TTKQLLDLYQKTL 75
                T++    L Q  L
Sbjct: 62 KLQPMITSETGKALIQTCL 80

>d1mnma_ d.88.1.1 (A:) MCM1 transcriptional regulator {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 85

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: MCM1 transcriptional regulator
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  102 bits (256), Expect = 7e-30
 Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 5/86 (5%)

Query: 2  GRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPS 61
           R K+E+K IEN T R VTFSKR++G+ KKA EL++L   +V +L+ S T   + + +P 
Sbjct: 3  ERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPK 62

Query: 62 TTTKQLLDLYQKTLRVDLWSSHYEKM 87
             + ++   +     +L  +     
Sbjct: 63 --FEPIVTQQE---GRNLIQACLNAP 83

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	162
d1egwa_	71	Myocyte enhancer factor Mef2a core {Human (Homo sa	100.0
d1srsa_	84	Serum response factor (SRF) core {Human (Homo sapi	100.0
d1mnma_	85	MCM1 transcriptional regulator {Baker's yeast (Sac	100.0

>d1egwa_ d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Myocyte enhancer factor Mef2a core
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-38  Score=202.54  Aligned_cols=70  Identities=43%  Similarity=0.743  Sum_probs=68.3

Q ss_pred             CCcccceeEecCCCCcceeccccccchhHhhHHhhhhccccEEEEEecCCCCcccccCCccchHHHHHHHhh
Q 031283            2 GRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQK   73 (162)
Q Consensus         2 gR~ki~ik~I~n~~~R~~tf~KR~~gL~KKA~ELs~LC~v~va~ivfsp~gk~~~~~~p~~~v~~ii~ry~~   73 (162)
                      ||+||+|++|+|+..|++||+||++||||||.|||+||||+||+|||||+|++|+|++|+  +++|++||.+
T Consensus         1 GR~Ki~ik~Ie~~~~R~vTFsKRk~GL~KKa~ELs~LC~~~valiv~s~~gk~~~f~s~~--~~~vl~ry~~   70 (71)
T d1egwa_           1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD--MDKVLLKYTE   70 (71)
T ss_dssp             CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESSC--HHHHHHHHHH
T ss_pred             CCccceEEeccCCchheeehhHhhhhHHHHHHHHhhccCCcEEEEEEcCCCCEEEeeCCC--HHHHHHHHhc
Confidence            899999999999999999999999999999999999999999999999999999999986  8999999975

>d1srsa_ d.88.1.1 (A:) Serum response factor (SRF) core {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Serum response factor (SRF) core
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-36  Score=198.67  Aligned_cols=72  Identities=32%  Similarity=0.477  Sum_probs=69.1

Q ss_pred             CCCcccceeEecCCCCcceeccccccchhHhhHHhhhhccccEEEEEecCCCCcccccCCccchHHHHHHHhhh
Q 031283            1 MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKT   74 (162)
Q Consensus         1 MgR~ki~ik~I~n~~~R~~tf~KR~~gL~KKA~ELs~LC~v~va~ivfsp~gk~~~~~~p~~~v~~ii~ry~~~   74 (162)
                      +||+||+|++|+|+..|++||+|||.||||||+|||+||||+||+|||||+|++|+|++|+  ++.++++|...
T Consensus         2 ~GR~Ki~i~~Ie~~~~R~vTFsKRr~GL~KKa~ELs~Lc~~~v~liv~s~~gk~~~f~s~~--~~~vi~~~~~~   73 (84)
T d1srsa_           2 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRK--LQPMITSETGK   73 (84)
T ss_dssp             CCCCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTCCEEEEECGG--GHHHHSSHHHH
T ss_pred             CCCceeeEEeecCcchhhhhhHHhhhhHHHHHHHHhcccCCcEEEEEEcCCCCEEEeeCCC--HHHHHHHHHHH
Confidence            6999999999999999999999999999999999999999999999999999999999997  88999999754

>d1mnma_ d.88.1.1 (A:) MCM1 transcriptional regulator {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: MCM1 transcriptional regulator
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.8e-36  Score=197.85  Aligned_cols=72  Identities=38%  Similarity=0.547  Sum_probs=69.3

Q ss_pred             CCcccceeEecCCCCcceeccccccchhHhhHHhhhhccccEEEEEecCCCCcccccCCccchHHHHHHHhhhh
Q 031283            2 GRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKTL   75 (162)
Q Consensus         2 gR~ki~ik~I~n~~~R~~tf~KR~~gL~KKA~ELs~LC~v~va~ivfsp~gk~~~~~~p~~~v~~ii~ry~~~~   75 (162)
                      ||+||+|++|+|+..|++||+||++||||||.|||+||||+||+|||||+|++|+|++|+  +..|++||....
T Consensus         3 ~R~Ki~i~~I~~~~~R~vTFsKRr~GL~KKa~ELsvLc~a~vaviv~s~~gk~~~f~sp~--v~~vl~r~~~~~   74 (85)
T d1mnma_           3 ERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPK--FEPIVTQQEGRN   74 (85)
T ss_dssp             CCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECTT--TTHHHHSHHHHH
T ss_pred             CccceEEEEecCCchhhhhhHHHHhhHHHHHHHHhccCCCcEEEEEEcCCCCEEeccCCC--HHHHHHHHhccc
Confidence            899999999999999999999999999999999999999999999999999999999997  789999998653