Citrus Sinensis ID: 031297

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160--
Protein Sequence
MTGHGGDEFLKFQDSEELQSHDLADAVKQMKEKHRFKELLIMVDTCQAATLFSQVPVTNFFGSVMETIHTDSAYRTTLSRKTSETKMPLQQSVEHDESRQLINSNVQDQTSDTKIEDKQCPFTQRWNAFQDNLEKIERIDSLVNYGLIIMFPLLLISTWLSR
Secondary Structure (PSIPRED)
cccccccccccccccccccHHHHHHHHHHHHHHccccEEEEEEEcccccccccccccccEEEEEEcccccccEEEEEEccccccccccccccccccHHHHHHccccccccccEEEEEEccccEEEEcccccccccccccEEEEEcccccccHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cccccccccEEcccHHHHcHHHHHHHHHHHHHHHHHcHEEEEEHHHHHHHHHHHcccccEEEEEEccccccccccccccHcccccccccHHccccccHHHHccccccccccHHHHHcccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mtghggdeflkfqdseelqsHDLADAVKQMKEKHRFKELLIMVDTCQAatlfsqvpvtnFFGSVMETIHtdsayrttlsrktsetkmplqqsvehdesrqlinsnvqdqtsdtkiedkqcpftqRWNAFQDNLEKIERIDSLVNYGLIIMFPLLLISTWLSR
Flexible Loop (DISEMBL)
mtghggdeflkfqdseelQSHDLADAVKQMKEKHRFKELLIMVDTCQAATLFSQVPVTNFFGSVMETIHTDSayrttlsrktsetkmplqqsvehdesrqlinsnvqdqtsdtkiedkqcpftqRWNAFQDNLEKIERIDSLVNYGLIIMFPLLlistwlsr
Low Complexity Region (SEG)
MTGHGGDEFLKFQDSEELQSHDLADAVKQMKEKHRFKELLIMVDTCQAATLFSQVPVTNFFGSVMETIHTDSAYRTTLSRKTSETKMPLQQSVEHDESRQLINSNVQDQTSDTKIEDKQCPFTQRWNAFQDNLEKIERIDSLVNYGLIIMFPLLLISTWLSR
Disordered region (IsUnstruct)
*********************************HRFKELLIMVDTCQAATLFSQVPVTNFFGSVMETIHTDSAY*********************************************CPFTQRWNAFQDNLEKIERIDSLVNYGLIIMFPLLLISTWL**
Disordered Region (DISOPRED)
MTGHGGDEFLKFQDSEELQSHDLADAVKQMKEKHRFKELLIMVDTCQAATLFSQVPVTNFFGSVMETIHTDSAYRTTLSRKTSETKMPLQQSVEHDESRQLINSNVQDQTSDTKIEDKQCPFTQRWNAFQDNLEKIERIDSLVNYGLIIMFPLLLISTWLS*
Disordered Region (DISEMBL)
MTGHGGDEFLKFQDSEELQSHDLADAVKQMKEKHRFKELLIMVDTCQAATLFSQVPVTNFFGSVMETIHTDSAYRTT********************SRQLINSNV********IEDKQCPFTQRWNAFQDNLEKIERIDSLVNYGLIIMFPLLLISTWLSR
Disordered Region (DISPRO)
******DEFLKFQDSEELQSHDLADAVKQMKEKHRFKELLIMVDTCQAATLFSQVPVTNFFGSVME****************SETKMPLQQSVEHDESRQLINSNVQDQTSDTKIEDKQCPFTQRWNAFQDNLEKIERIDSLVNYGLIIMFPLLLISTWLSR
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTGHGGDEFLKFQDSEELQSHDLADAVKQMKEKHRFKELLIMVDTCQAATLFSQVPVTNFFGSVMETIHTDSAYRTTLSRKTSETKMPLQQSVEHDESRQLINSNVQDQTSDTKIEDKQCPFTQRWNAFQDNLEKIERIDSLVNYGLIIMFPLLLISTWLSR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	162	2.2.26 [Sep-21-2011]
P49018	411	GPI-anchor transamidase O	yes	no	0.382	0.150	0.564	3e-16
Q8T4E1	355	Putative GPI-anchor trans	yes	no	0.444	0.202	0.527	3e-16
Q9USP5	380	GPI-anchor transamidase O	yes	no	0.444	0.189	0.5	1e-15
Q92643	395	GPI-anchor transamidase O	yes	no	0.444	0.182	0.472	1e-13
Q3MHZ7	395	GPI-anchor transamidase O	yes	no	0.444	0.182	0.472	1e-13
Q5R6L8	395	GPI-anchor transamidase O	yes	no	0.444	0.182	0.472	1e-13
Q9CXY9	395	GPI-anchor transamidase O	yes	no	0.444	0.182	0.472	1e-13
Q4KRV1	395	GPI-anchor transamidase O	yes	no	0.444	0.182	0.472	1e-13
P49048	319	Putative GPI-anchor trans	yes	no	0.444	0.225	0.416	6e-12

>sp|P49018|GPI8_YEAST GPI-anchor transamidase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GPI8 PE=1 SV=1

 Score = 84.3 bits (207), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 35/62 (56%), Positives = 46/62 (74%)

Query: 1   MTGHGGDEFLKFQDSEELQSHDLADAVKQMKEKHRFKELLIMVDTCQAATLFSQVPVTNF 60
           MTGHGGD+FLKFQD+EE+ S D+ADA +QM EK R+ E+  M+DTCQA T++S+    N 
Sbjct: 154 MTGHGGDDFLKFQDAEEIASEDIADAFQQMYEKKRYNEIFFMIDTCQANTMYSKFYSPNI 213

Query: 61  FG 62
             
Sbjct: 214 LA 215

Mediates GPI anchoring in the endoplasmic reticulum, by replacing a protein's C-terminal GPI attachment signal peptide with a pre-assembled GPI. During this transamidation reaction, the GPI transamidase forms a carbonyl intermediate with the substrate protein.
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)
EC: 3EC: .EC: -EC: .EC: -EC: .EC: -

>sp|Q8T4E1|GPI8_DROME Putative GPI-anchor transamidase OS=Drosophila melanogaster GN=CG4406 PE=2 SV=1

 Score = 84.3 bits (207), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 38/72 (52%), Positives = 48/72 (66%)

Query: 1   MTGHGGDEFLKFQDSEELQSHDLADAVKQMKEKHRFKELLIMVDTCQAATLFSQVPVTNF 60
           +TGHGGD FLKFQDSEE+ S +LAD ++QM EK R+ EL  MVDTCQAA+L+ +    N 
Sbjct: 162 LTGHGGDGFLKFQDSEEITSQELADGIQQMWEKKRYNELFFMVDTCQAASLYEKFTSPNV 221

Query: 61  FGSVMETIHTDS 72
                  +  DS
Sbjct: 222 LAVASSLVGEDS 233

Mediates GPI anchoring in the endoplasmic reticulum, by replacing a protein's C-terminal GPI attachment signal peptide with a pre-assembled GPI. During this transamidation reaction, the GPI transamidase forms a carbonyl intermediate with the substrate protein.

Drosophila melanogaster (taxid: 7227)

EC: 3

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q9USP5|GPI8_SCHPO GPI-anchor transamidase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gpi8 PE=2 SV=1

 Score = 82.4 bits (202), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 36/72 (50%), Positives = 50/72 (69%)

Query: 1   MTGHGGDEFLKFQDSEELQSHDLADAVKQMKEKHRFKELLIMVDTCQAATLFSQVPVTNF 60
           MTGHGGD F+KFQD+EEL S DLADA++Q+ +  R+ E+L MVDTCQA +L++++   N 
Sbjct: 142 MTGHGGDGFIKFQDAEELSSEDLADAIEQIHQHKRYNEILFMVDTCQANSLYTKIYSPNV 201

Query: 61  FGSVMETIHTDS 72
                  + T S
Sbjct: 202 LAIGSSEVGTSS 213

Mediates GPI anchoring in the endoplasmic reticulum, by replacing a protein's C-terminal GPI attachment signal peptide with a pre-assembled GPI. During this transamidation reaction, the GPI transamidase forms a carbonyl intermediate with the substrate protein.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 3

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q92643|GPI8_HUMAN GPI-anchor transamidase OS=Homo sapiens GN=PIGK PE=1 SV=2

 Score = 75.9 bits (185), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 48/72 (66%)

Query: 1   MTGHGGDEFLKFQDSEELQSHDLADAVKQMKEKHRFKELLIMVDTCQAATLFSQVPVTNF 60
           MTGHGG+ FLKFQDSEE+ + +LADA +QM +K R+ ELL ++DTCQ A+++ +    N 
Sbjct: 161 MTGHGGNGFLKFQDSEEITNIELADAFEQMWQKRRYNELLFIIDTCQGASMYERFYSPNI 220

Query: 61  FGSVMETIHTDS 72
                  +  DS
Sbjct: 221 MALASSQVGEDS 232

Mediates GPI anchoring in the endoplasmic reticulum, by replacing a protein's C-terminal GPI attachment signal peptide with a pre-assembled GPI. During this transamidation reaction, the GPI transamidase forms a carbonyl intermediate with the substrate protein.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q3MHZ7|GPI8_BOVIN GPI-anchor transamidase OS=Bos taurus GN=PIGK PE=2 SV=1

 Score = 75.9 bits (185), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 48/72 (66%)

Query: 1   MTGHGGDEFLKFQDSEELQSHDLADAVKQMKEKHRFKELLIMVDTCQAATLFSQVPVTNF 60
           MTGHGG+ FLKFQDSEE+ + +LADA +QM +K R+ ELL ++DTCQ A+++ +    N 
Sbjct: 161 MTGHGGNGFLKFQDSEEITNIELADAFEQMWQKRRYNELLFIIDTCQGASMYERFYSPNI 220

Query: 61  FGSVMETIHTDS 72
                  +  DS
Sbjct: 221 MALASSQVGEDS 232

Mediates GPI anchoring in the endoplasmic reticulum, by replacing a protein's C-terminal GPI attachment signal peptide with a pre-assembled GPI. During this transamidation reaction, the GPI transamidase forms a carbonyl intermediate with the substrate protein.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q5R6L8|GPI8_PONAB GPI-anchor transamidase OS=Pongo abelii GN=PIGK PE=2 SV=1

 Score = 75.9 bits (185), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 48/72 (66%)

Query: 1   MTGHGGDEFLKFQDSEELQSHDLADAVKQMKEKHRFKELLIMVDTCQAATLFSQVPVTNF 60
           MTGHGG+ FLKFQDSEE+ + +LADA +QM +K R+ ELL ++DTCQ A+++ +    N 
Sbjct: 161 MTGHGGNGFLKFQDSEEITNIELADAFEQMWQKRRYNELLFIIDTCQGASMYERFYSPNI 220

Query: 61  FGSVMETIHTDS 72
                  +  DS
Sbjct: 221 MALASSQVGEDS 232

Mediates GPI anchoring in the endoplasmic reticulum, by replacing a protein's C-terminal GPI attachment signal peptide with a pre-assembled GPI. During this transamidation reaction, the GPI transamidase forms a carbonyl intermediate with the substrate protein.

Pongo abelii (taxid: 9601)

EC: 3

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q9CXY9|GPI8_MOUSE GPI-anchor transamidase OS=Mus musculus GN=Pigk PE=2 SV=2

 Score = 75.9 bits (185), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 48/72 (66%)

Query: 1   MTGHGGDEFLKFQDSEELQSHDLADAVKQMKEKHRFKELLIMVDTCQAATLFSQVPVTNF 60
           MTGHGG+ FLKFQDSEE+ + +LADA +QM +K R+ ELL ++DTCQ A+++ +    N 
Sbjct: 161 MTGHGGNGFLKFQDSEEITNIELADAFEQMWQKRRYNELLFIIDTCQGASMYERFYSPNI 220

Query: 61  FGSVMETIHTDS 72
                  +  DS
Sbjct: 221 MALASSQVGEDS 232

Mediates GPI anchoring in the endoplasmic reticulum, by replacing a protein's C-terminal GPI attachment signal peptide with a pre-assembled GPI. During this transamidation reaction, the GPI transamidase forms a carbonyl intermediate with the substrate protein.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q4KRV1|GPI8_PIG GPI-anchor transamidase OS=Sus scrofa GN=PIGK PE=2 SV=1

 Score = 75.5 bits (184), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 48/72 (66%)

Query: 1   MTGHGGDEFLKFQDSEELQSHDLADAVKQMKEKHRFKELLIMVDTCQAATLFSQVPVTNF 60
           MTGHGG+ FLKFQDSEE+ + +LADA +QM +K R+ ELL ++DTCQ A+++ +    N 
Sbjct: 161 MTGHGGNGFLKFQDSEEITNIELADAFEQMWQKRRYNELLFIIDTCQGASMYERFYSPNI 220

Query: 61  FGSVMETIHTDS 72
                  +  DS
Sbjct: 221 MALASSQVGEDS 232

Mediates GPI anchoring in the endoplasmic reticulum, by replacing a protein's C-terminal GPI attachment signal peptide with a pre-assembled GPI. During this transamidation reaction, the GPI transamidase forms a carbonyl intermediate with the substrate protein.

Sus scrofa (taxid: 9823)

EC: 3

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|P49048|GPI8_CAEEL Putative GPI-anchor transamidase OS=Caenorhabditis elegans GN=T05E11.6 PE=1 SV=3

 Score = 70.1 bits (170), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 48/72 (66%)

Query: 1   MTGHGGDEFLKFQDSEELQSHDLADAVKQMKEKHRFKELLIMVDTCQAATLFSQVPVTNF 60
           +TGHGGD F+KFQDSEEL + DLA A++ M E +R+ E+L++ D+C++A+++  +   N 
Sbjct: 153 LTGHGGDSFMKFQDSEELTNVDLAYAIQTMFEDNRYHEMLVIADSCRSASMYEWIDSPNV 212

Query: 61  FGSVMETIHTDS 72
                   H +S
Sbjct: 213 LSLSSSLTHEES 224

Mediates GPI anchoring in the endoplasmic reticulum, by replacing a protein's C-terminal GPI attachment signal peptide with a pre-assembled GPI. During this transamidation reaction, the GPI transamidase forms a carbonyl intermediate with the substrate protein.

Caenorhabditis elegans (taxid: 6239)

EC: 3

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	162
224116008	406	predicted protein [Populus trichocarpa]	0.660	0.263	0.612	1e-31
226496992	402	uncharacterized protein LOC100273218 pre	0.407	0.164	0.852	1e-24
115445065	404	Os02g0219400 [Oryza sativa Japonica Grou	0.407	0.163	0.852	1e-24
242060900	403	hypothetical protein SORBIDRAFT_04g00696	0.407	0.163	0.852	1e-24
413926189	415	hypothetical protein ZEAMMB73_271464 [Ze	0.407	0.159	0.852	2e-24
359488041	430	PREDICTED: GPI-anchor transamidase-like	0.672	0.253	0.522	3e-24
296087890	405	unnamed protein product [Vitis vinifera]	0.672	0.269	0.522	3e-24
357140299	401	PREDICTED: GPI-anchor transamidase-like	0.407	0.164	0.838	3e-24
449449547	399	PREDICTED: GPI-anchor transamidase-like	0.320	0.130	0.963	5e-24
326501548	424	predicted protein [Hordeum vulgare subsp	0.407	0.155	0.838	5e-24

>gi|224116008|ref|XP_002332025.1| predicted protein [Populus trichocarpa] gi|222875250|gb|EEF12381.1| predicted protein [Populus trichocarpa]

 Score =  140 bits (354), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 68/111 (61%), Positives = 85/111 (76%), Gaps = 4/111 (3%)

Query: 54  QVPVTNFFGSVMETIHTDSAYRTTLSRKTSE---TKMPLQQSVEHDESRQLINSNVQDQT 110
           +VPVTNFFGSVMETIHTDSAYR  + RK S+     M +++SV+HD+ R LI+SNVQD T
Sbjct: 296 EVPVTNFFGSVMETIHTDSAYRA-VPRKMSKRAGINMAVEKSVQHDDRRTLIDSNVQDPT 354

Query: 111 SDTKIEDKQCPFTQRWNAFQDNLEKIERIDSLVNYGLIIMFPLLLISTWLS 161
           S  K +D+ CPFT+  N F D +E+IE  DSLVNYGLI+M PLL++S WLS
Sbjct: 355 SHIKTKDQNCPFTRTMNTFFDKVERIEHPDSLVNYGLILMLPLLMVSVWLS 405

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226496992|ref|NP_001141132.1| uncharacterized protein LOC100273218 precursor [Zea mays] gi|194690088|gb|ACF79128.1| unknown [Zea mays] gi|194695246|gb|ACF81707.1| unknown [Zea mays] gi|194702808|gb|ACF85488.1| unknown [Zea mays] gi|194703146|gb|ACF85657.1| unknown [Zea mays]

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 58/68 (85%), Positives = 60/68 (88%), Gaps = 2/68 (2%)

Query: 1   MTGHGGDEFLKFQDSEELQSHDLADAVKQMKEKHRFKELLIMVDTCQAATLFSQV--PVT 58
           MTGHGGDEFLKFQDSEELQSHDLADAVKQMKEKHRFKELLIMVDTCQAATLFSQ+  P  
Sbjct: 163 MTGHGGDEFLKFQDSEELQSHDLADAVKQMKEKHRFKELLIMVDTCQAATLFSQLQSPGV 222

Query: 59  NFFGSVME 66
              GS M+
Sbjct: 223 LAIGSSMK 230

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115445065|ref|NP_001046312.1| Os02g0219400 [Oryza sativa Japonica Group] gi|46805856|dbj|BAD17190.1| putative GPI-anchor transamidase precursor [Oryza sativa Japonica Group] gi|113535843|dbj|BAF08226.1| Os02g0219400 [Oryza sativa Japonica Group] gi|125538643|gb|EAY85038.1| hypothetical protein OsI_06395 [Oryza sativa Indica Group] gi|125581330|gb|EAZ22261.1| hypothetical protein OsJ_05916 [Oryza sativa Japonica Group] gi|215704175|dbj|BAG93015.1| unnamed protein product [Oryza sativa Japonica Group]

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 58/68 (85%), Positives = 60/68 (88%), Gaps = 2/68 (2%)

Query: 1   MTGHGGDEFLKFQDSEELQSHDLADAVKQMKEKHRFKELLIMVDTCQAATLFSQV--PVT 58
           MTGHGGDEFLKFQDSEELQSHDLADAVKQMKEKHRFKELLIMVDTCQAATLFSQ+  P  
Sbjct: 163 MTGHGGDEFLKFQDSEELQSHDLADAVKQMKEKHRFKELLIMVDTCQAATLFSQLQSPGV 222

Query: 59  NFFGSVME 66
              GS M+
Sbjct: 223 LTIGSSMK 230

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242060900|ref|XP_002451739.1| hypothetical protein SORBIDRAFT_04g006960 [Sorghum bicolor] gi|241931570|gb|EES04715.1| hypothetical protein SORBIDRAFT_04g006960 [Sorghum bicolor]

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 58/68 (85%), Positives = 60/68 (88%), Gaps = 2/68 (2%)

Query: 1   MTGHGGDEFLKFQDSEELQSHDLADAVKQMKEKHRFKELLIMVDTCQAATLFSQV--PVT 58
           MTGHGGDEFLKFQDSEELQSHDLADAVKQMKEKHRFKELLIMVDTCQAATLFSQ+  P  
Sbjct: 164 MTGHGGDEFLKFQDSEELQSHDLADAVKQMKEKHRFKELLIMVDTCQAATLFSQLQSPGV 223

Query: 59  NFFGSVME 66
              GS M+
Sbjct: 224 LAIGSSMK 231

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413926189|gb|AFW66121.1| hypothetical protein ZEAMMB73_271464 [Zea mays]

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 58/68 (85%), Positives = 60/68 (88%), Gaps = 2/68 (2%)

Query: 1   MTGHGGDEFLKFQDSEELQSHDLADAVKQMKEKHRFKELLIMVDTCQAATLFSQV--PVT 58
           MTGHGGDEFLKFQDSEELQSHDLADAVKQMKEKHRFKELLIMVDTCQAATLFSQ+  P  
Sbjct: 176 MTGHGGDEFLKFQDSEELQSHDLADAVKQMKEKHRFKELLIMVDTCQAATLFSQLQSPGV 235

Query: 59  NFFGSVME 66
              GS M+
Sbjct: 236 LAIGSSMK 243

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488041|ref|XP_003633692.1| PREDICTED: GPI-anchor transamidase-like [Vitis vinifera]

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 58/111 (52%), Positives = 75/111 (67%), Gaps = 2/111 (1%)

Query: 54  QVPVTNFFGSVMETIHTDSAYRTTLSRKTSE--TKMPLQQSVEHDESRQLINSNVQDQTS 111
           +VPVTNFFGSVMETIHT SAYR    + + +   K+ L QSV  D+ R L +SNVQDQ +
Sbjct: 320 EVPVTNFFGSVMETIHTVSAYRAPSGKNSDKDKIKLSLDQSVGLDKKRTLTSSNVQDQIN 379

Query: 112 DTKIEDKQCPFTQRWNAFQDNLEKIERIDSLVNYGLIIMFPLLLISTWLSR 162
           ++  +D+   F   W  F +  EKIE +D LVNYGL+IM PL+ + TWLSR
Sbjct: 380 NSNTKDQLGVFEHLWCTFLNKAEKIEDVDILVNYGLVIMLPLVAVFTWLSR 430

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087890|emb|CBI35173.3| unnamed protein product [Vitis vinifera]

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 58/111 (52%), Positives = 75/111 (67%), Gaps = 2/111 (1%)

Query: 54  QVPVTNFFGSVMETIHTDSAYRTTLSRKTSE--TKMPLQQSVEHDESRQLINSNVQDQTS 111
           +VPVTNFFGSVMETIHT SAYR    + + +   K+ L QSV  D+ R L +SNVQDQ +
Sbjct: 295 EVPVTNFFGSVMETIHTVSAYRAPSGKNSDKDKIKLSLDQSVGLDKKRTLTSSNVQDQIN 354

Query: 112 DTKIEDKQCPFTQRWNAFQDNLEKIERIDSLVNYGLIIMFPLLLISTWLSR 162
           ++  +D+   F   W  F +  EKIE +D LVNYGL+IM PL+ + TWLSR
Sbjct: 355 NSNTKDQLGVFEHLWCTFLNKAEKIEDVDILVNYGLVIMLPLVAVFTWLSR 405

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357140299|ref|XP_003571707.1| PREDICTED: GPI-anchor transamidase-like [Brachypodium distachyon]

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 57/68 (83%), Positives = 60/68 (88%), Gaps = 2/68 (2%)

Query: 1   MTGHGGDEFLKFQDSEELQSHDLADAVKQMKEKHRFKELLIMVDTCQAATLFSQV--PVT 58
           MTGHGGDEFLKFQD+EELQSHDLADAVKQMKEKHRFKELLIMVDTCQAATLFSQ+  P  
Sbjct: 165 MTGHGGDEFLKFQDNEELQSHDLADAVKQMKEKHRFKELLIMVDTCQAATLFSQLHSPGV 224

Query: 59  NFFGSVME 66
              GS M+
Sbjct: 225 LAIGSSMK 232

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449449547|ref|XP_004142526.1| PREDICTED: GPI-anchor transamidase-like [Cucumis sativus] gi|449479751|ref|XP_004155697.1| PREDICTED: GPI-anchor transamidase-like [Cucumis sativus]

 Score =  115 bits (289), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 53/55 (96%), Positives = 55/55 (100%)

Query: 1   MTGHGGDEFLKFQDSEELQSHDLADAVKQMKEKHRFKELLIMVDTCQAATLFSQV 55
           MTGHGGDEFLKFQDSEELQSHDLADAVKQMKEKHRFKELLIMVDTCQAATLF+Q+
Sbjct: 156 MTGHGGDEFLKFQDSEELQSHDLADAVKQMKEKHRFKELLIMVDTCQAATLFNQL 210

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326501548|dbj|BAK02563.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  115 bits (289), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 57/68 (83%), Positives = 60/68 (88%), Gaps = 2/68 (2%)

Query: 1   MTGHGGDEFLKFQDSEELQSHDLADAVKQMKEKHRFKELLIMVDTCQAATLFSQV--PVT 58
           MTGHGGDEFLKFQD+EELQSHDLADAVKQMKEKHRFKELLIMVDTCQAATLFSQ+  P  
Sbjct: 166 MTGHGGDEFLKFQDNEELQSHDLADAVKQMKEKHRFKELLIMVDTCQAATLFSQLQSPGV 225

Query: 59  NFFGSVME 66
              GS M+
Sbjct: 226 LAIGSSMK 233

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	162
TAIR|locus:2025590	388	AT1G08750 "AT1G08750" [Arabido	0.339	0.141	0.909	6.7e-45
DICTYBASE|DDB_G0285461	446	pigK "phosphatidylinositol gly	0.333	0.121	0.722	2.8e-24
ASPGD|ASPL0000055927	397	AN0871 [Emericella nidulans (t	0.864	0.352	0.359	1.4e-15
FB|FBgn0023545	355	CG4406 [Drosophila melanogaste	0.444	0.202	0.527	2e-15
SGD|S000002739	411	GPI8 "ER membrane glycoprotein	0.450	0.177	0.513	4.2e-15
CGD|CAL0004308	383	GPI8 [Candida albicans (taxid:	0.450	0.190	0.472	9.5e-15
POMBASE|SPCC11E10.02c	380	gpi8 "pig-K" [Schizosaccharomy	0.444	0.189	0.5	1.2e-14
UNIPROTKB|G4MYG7	394	MGG_10490 "GPI-anchor transami	0.388	0.159	0.555	2.2e-14
UNIPROTKB|B1AK81	301	PIGK "GPI-anchor transamidase"	0.444	0.239	0.472	1.1e-13
UNIPROTKB|F1M7W4	316	Pigk "Protein Pigk" [Rattus no	0.444	0.227	0.472	1.3e-13

TAIR|locus:2025590 AT1G08750 "AT1G08750" [Arabidopsis thaliana (taxid:3702)]

 Score = 264 (98.0 bits), Expect = 6.7e-45, Sum P(2) = 6.7e-45
 Identities = 50/55 (90%), Positives = 54/55 (98%)

Query:     1 MTGHGGDEFLKFQDSEELQSHDLADAVKQMKEKHRFKELLIMVDTCQAATLFSQV 55
             MTGHGGDEFLKFQD+EELQSHDLADAVKQMKEK RFKEL+IMVDTCQAATLF+Q+
Sbjct:   143 MTGHGGDEFLKFQDAEELQSHDLADAVKQMKEKRRFKELMIMVDTCQAATLFNQL 197

GO:0003923 "GPI-anchor transamidase activity" evidence=ISS

GO:0004197 "cysteine-type endopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0046520 "sphingoid biosynthetic process" evidence=RCA

GO:0005783 "endoplasmic reticulum" evidence=IDA

DICTYBASE|DDB_G0285461 pigK "phosphatidylinositol glycan, class K" [Dictyostelium discoideum (taxid:44689)]

 Score = 213 (80.0 bits), Expect = 2.8e-24, Sum P(2) = 2.8e-24
 Identities = 39/54 (72%), Positives = 47/54 (87%)

Query:     1 MTGHGGDEFLKFQDSEELQSHDLADAVKQMKEKHRFKELLIMVDTCQAATLFSQ 54
             +TGHGGDEFLKFQD+EE+ SHDLADA KQM EK R+ E+L MVDTCQA TL+++
Sbjct:   182 LTGHGGDEFLKFQDNEEISSHDLADAFKQMWEKKRYHEILFMVDTCQANTLYTR 235

GO:0006508 "proteolysis" evidence=IEA

GO:0004197 "cysteine-type endopeptidase activity" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

ASPGD|ASPL0000055927 AN0871 [Emericella nidulans (taxid:162425)]

 Score = 201 (75.8 bits), Expect = 1.4e-15, P = 1.4e-15
 Identities = 55/153 (35%), Positives = 82/153 (53%)

Query:     1 MTGHGGDEFLKFQDSEELQSHDLADAVKQMKEKHRFKELLIMVDTCQAATLFSQVPVTNF 60
             MTGHGGD+FLKFQD+EE+ + DLADA  QM EK R+ ELL M+DTCQA T+++     N 
Sbjct:   145 MTGHGGDQFLKFQDAEEIGAWDLADAFGQMWEKKRYHELLFMIDTCQANTMYTHFYSPNI 204

Query:    61 FGSVMETI-------HTDSAYRTT-LSRKTSETKMPLQQSVEHDESRQLINSNVQDQTSD 112
               +    +       H D+      + R T      L+  V   +S+Q +  ++ D   +
Sbjct:   205 IATGSSELDQSSYSHHADNDVGVAVIDRWTYYVLEFLENRVTSLDSKQTLG-DLFDSYDE 263

Query:   113 TKIEDKQCPFTQRWNAFQDNLEKIERIDSLVNY 145
             TKI     P   RW+ F    E+  R+ ++V++
Sbjct:   264 TKIHSN--PGV-RWDLFPGG-EQEGRLRTVVDF 292

GO:0042765 "GPI-anchor transamidase complex" evidence=IEA

GO:0003923 "GPI-anchor transamidase activity" evidence=IEA

GO:0004197 "cysteine-type endopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0016255 "attachment of GPI anchor to protein" evidence=IEA

FB|FBgn0023545 CG4406 [Drosophila melanogaster (taxid:7227)]

 Score = 198 (74.8 bits), Expect = 2.0e-15, P = 2.0e-15
 Identities = 38/72 (52%), Positives = 48/72 (66%)

Query:     1 MTGHGGDEFLKFQDSEELQSHDLADAVKQMKEKHRFKELLIMVDTCQAATLFSQVPVTNF 60
             +TGHGGD FLKFQDSEE+ S +LAD ++QM EK R+ EL  MVDTCQAA+L+ +    N 
Sbjct:   162 LTGHGGDGFLKFQDSEEITSQELADGIQQMWEKKRYNELFFMVDTCQAASLYEKFTSPNV 221

Query:    61 FGSVMETIHTDS 72
                    +  DS
Sbjct:   222 LAVASSLVGEDS 233

GO:0003923 "GPI-anchor transamidase activity" evidence=ISS

GO:0004197 "cysteine-type endopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

SGD|S000002739 GPI8 "ER membrane glycoprotein subunit of the GPI transamidase complex" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 197 (74.4 bits), Expect = 4.2e-15, P = 4.2e-15
 Identities = 38/74 (51%), Positives = 53/74 (71%)

Query:     1 MTGHGGDEFLKFQDSEELQSHDLADAVKQMKEKHRFKELLIMVDTCQAATLFSQVPVTNF 60
             MTGHGGD+FLKFQD+EE+ S D+ADA +QM EK R+ E+  M+DTCQA T++S+    N 
Sbjct:   154 MTGHGGDDFLKFQDAEEIASEDIADAFQQMYEKKRYNEIFFMIDTCQANTMYSKFYSPNI 213

Query:    61 FGSVMETIHTDSAY 74
               +V  +   +S+Y
Sbjct:   214 L-AVGSSEMDESSY 226

GO:0006506 "GPI anchor biosynthetic process" evidence=IEA

GO:0042765 "GPI-anchor transamidase complex" evidence=IPI

GO:0016021 "integral to membrane" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA;IDA

GO:0004197 "cysteine-type endopeptidase activity" evidence=IEA

GO:0003923 "GPI-anchor transamidase activity" evidence=IMP;IPI

GO:0016255 "attachment of GPI anchor to protein" evidence=IMP

CGD|CAL0004308 GPI8 [Candida albicans (taxid:5476)]

 Score = 193 (73.0 bits), Expect = 9.5e-15, P = 9.5e-15
 Identities = 35/74 (47%), Positives = 51/74 (68%)

Query:     1 MTGHGGDEFLKFQDSEELQSHDLADAVKQMKEKHRFKELLIMVDTCQAATLFSQVPVTNF 60
             +TGHGG+EFLKFQD+EE+ +HDLADA  QM ++ R+ E+  M+DTCQA T++ ++   N 
Sbjct:   157 LTGHGGNEFLKFQDAEEISAHDLADAFSQMYDQKRYNEIFFMIDTCQANTMYEKIHSPNI 216

Query:    61 FGSVMETIHTDSAY 74
                    I  +S+Y
Sbjct:   217 LAVGSSEIE-ESSY 229

GO:0042765 "GPI-anchor transamidase complex" evidence=IEA

GO:0003923 "GPI-anchor transamidase activity" evidence=IEA

GO:0016255 "attachment of GPI anchor to protein" evidence=IEA

POMBASE|SPCC11E10.02c gpi8 "pig-K" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 192 (72.6 bits), Expect = 1.2e-14, P = 1.2e-14
 Identities = 36/72 (50%), Positives = 50/72 (69%)

Query:     1 MTGHGGDEFLKFQDSEELQSHDLADAVKQMKEKHRFKELLIMVDTCQAATLFSQVPVTNF 60
             MTGHGGD F+KFQD+EEL S DLADA++Q+ +  R+ E+L MVDTCQA +L++++   N 
Sbjct:   142 MTGHGGDGFIKFQDAEELSSEDLADAIEQIHQHKRYNEILFMVDTCQANSLYTKIYSPNV 201

Query:    61 FGSVMETIHTDS 72
                    + T S
Sbjct:   202 LAIGSSEVGTSS 213

GO:0003923 "GPI-anchor transamidase activity" evidence=IGI

GO:0004197 "cysteine-type endopeptidase activity" evidence=ISM

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0006508 "proteolysis" evidence=IEA

GO:0016255 "attachment of GPI anchor to protein" evidence=IGI

GO:0042765 "GPI-anchor transamidase complex" evidence=IGI

UNIPROTKB|G4MYG7 MGG_10490 "GPI-anchor transamidase" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 190 (71.9 bits), Expect = 2.2e-14, P = 2.2e-14
 Identities = 35/63 (55%), Positives = 48/63 (76%)

Query:     1 MTGHGGDEFLKFQDSEELQSHDLADAVKQMKEKHRFKELLIMVDTCQAATLFSQVPVTNF 60
             MTGHGG+EFLKFQD+EE+ + DLADA +QM EK R+ E+L M+DTCQA T+ +++   N 
Sbjct:   147 MTGHGGNEFLKFQDAEEIGAFDLADAFEQMWEKKRYNEILFMIDTCQANTMLTKLYSPNI 206

Query:    61 FGS 63
               +
Sbjct:   207 IAT 209

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|B1AK81 PIGK "GPI-anchor transamidase" [Homo sapiens (taxid:9606)]

 Score = 180 (68.4 bits), Expect = 1.1e-13, P = 1.1e-13
 Identities = 34/72 (47%), Positives = 48/72 (66%)

Query:     1 MTGHGGDEFLKFQDSEELQSHDLADAVKQMKEKHRFKELLIMVDTCQAATLFSQVPVTNF 60
             MTGHGG+ FLKFQDSEE+ + +LADA +QM +K R+ ELL ++DTCQ A+++ +    N 
Sbjct:    67 MTGHGGNGFLKFQDSEEITNIELADAFEQMWQKRRYNELLFIIDTCQGASMYERFYSPNI 126

Query:    61 FGSVMETIHTDS 72
                    +  DS
Sbjct:   127 MALASSQVGEDS 138

GO:0004197 "cysteine-type endopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

UNIPROTKB|F1M7W4 Pigk "Protein Pigk" [Rattus norvegicus (taxid:10116)]

 Score = 180 (68.4 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 34/72 (47%), Positives = 48/72 (66%)

Query:     1 MTGHGGDEFLKFQDSEELQSHDLADAVKQMKEKHRFKELLIMVDTCQAATLFSQVPVTNF 60
             MTGHGG+ FLKFQDSEE+ + +LADA +QM +K R+ ELL ++DTCQ A+++ +    N 
Sbjct:    82 MTGHGGNGFLKFQDSEEITNIELADAFEQMWQKRRYNELLFIIDTCQGASMYERFYSPNI 141

Query:    61 FGSVMETIHTDS 72
                    +  DS
Sbjct:   142 MALASSQVGEDS 153

GO:0003923 "GPI-anchor transamidase activity" evidence=IEA

GO:0004197 "cysteine-type endopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0042765 "GPI-anchor transamidase complex" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	162
COG5206	382	COG5206, GPI8, Glycosylphosphatidylinositol transa	2e-18
pfam01650	258	pfam01650, Peptidase_C13, Peptidase C13 family	8e-08

>gnl|CDD|227531 COG5206, GPI8, Glycosylphosphatidylinositol transamidase (GPIT), subunit GPI8 [Posttranslational modification, protein turnover, chaperones]

 Score = 80.4 bits (198), Expect = 2e-18
 Identities = 34/59 (57%), Positives = 43/59 (72%)

Query: 1   MTGHGGDEFLKFQDSEELQSHDLADAVKQMKEKHRFKELLIMVDTCQAATLFSQVPVTN 59
           MTGHGGD FLKFQD+EE+ S DLADA+ Q+  K R+ E+L M+DTCQA  L+ +    N
Sbjct: 145 MTGHGGDAFLKFQDAEEMTSEDLADAISQLAAKKRYNEILFMIDTCQANALYDKSYSPN 203

Length = 382

>gnl|CDD|216627 pfam01650, Peptidase_C13, Peptidase C13 family

 Score = 49.6 bits (119), Expect = 8e-08
 Identities = 18/56 (32%), Positives = 35/56 (62%)

Query: 1   MTGHGGDEFLKFQDSEELQSHDLADAVKQMKEKHRFKELLIMVDTCQAATLFSQVP 56
            T HG    L F + + L + DLA+A+K+M  + ++K+L+  V+ C++ ++F  +P
Sbjct: 115 FTDHGAPGVLGFPELDYLYAKDLAEALKKMHARGKYKKLVFYVEACESGSMFEGLP 170

Members of this family are asparaginyl peptidases. The blood fluke parasite Schistosoma mansoni has at least five Clan CA cysteine peptidases in its digestive tract including cathepsins B (2 isoforms), C, F and L. All have been recombinantly expressed as active enzymes, albeit in various stages of activation. In addition, a Clan CD peptidase, termed asparaginyl endopeptidase or 'legumain' has been identified. This has formerly been characterized as a 'haemoglobinase', but this term is probably incorrect. Two cDNAs have been described for Schistosoma mansoni legumain; one encodes an active enzyme whereas the active site cysteine residue encoded by the second cDNA is substituted by an asparagine residue. Both forms have been recombinantly expressed. Length = 258

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	162
KOG1348	477	consensus Asparaginyl peptidases [Posttranslationa	100.0
PF01650	256	Peptidase_C13: Peptidase C13 family; InterPro: IPR	99.97
KOG1349	309	consensus Gpi-anchor transamidase [Posttranslation	99.97
COG5206	382	GPI8 Glycosylphosphatidylinositol transamidase (GP	99.93
PF00656	248	Peptidase_C14: Caspase domain; InterPro: IPR011600	96.34
cd00032	243	CASc Caspase, interleukin-1 beta converting enzyme	88.59
smart00115	241	CASc Caspase, interleukin-1 beta converting enzyme	88.19
KOG1546	362	consensus Metacaspase involved in regulation of ap	83.11

>KOG1348 consensus Asparaginyl peptidases [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.2e-38  Score=279.56  Aligned_cols=119  Identities=20%  Similarity=0.377  Sum_probs=111.1

Q ss_pred             CCCCCCCCeeecCCCCccCHHHHHHHHHHHHHhCccceEEEEEeccccccccccCCC--CcEEEEeccCCCCCccceeec
Q 031297            1 MTGHGGDEFLKFQDSEELQSHDLADAVKQMKEKHRFKELLIMVDTCQAATLFSQVPV--TNFFGSVMETIHTDSAYRTTL   78 (162)
Q Consensus         1 ftgHGg~g~l~Fpd~~~L~a~dL~~~l~~M~~~krY~kmvf~vEaC~SgSmf~~l~~--~NV~a~Taa~~~e~S~ya~~~   78 (162)
                      |+||||||.|.||+++.|+++||+++|++||+.|+|+|||||+|||||||||+++.+  .||||+||||++| |+|+|||
T Consensus       161 ytDHG~pGvl~mP~~~~l~akdlnevL~kmhk~k~Y~~mvfYlEACESGSmfegiLp~~lnIYatTAaNa~E-SSwgtyc  239 (477)
T KOG1348|consen  161 YTDHGGPGVLGMPTSPDLYAKDLNEVLKKMHKSKTYKKMVFYLEACESGSMFEGILPKNLNIYATTAANARE-SSWGTYC  239 (477)
T ss_pred             EecCCCCceEecCCCcchhHHHHHHHHHHHHhccchheEEEEeeeccCcchhhhhccCCCcEEEeecCCccc-cccceeC
Confidence            689999999999998899999999999999999999999999999999999997665  8999999999999 8889999


Q ss_pred             cCC----CCCCCCccc-----ccccchhhhcccchhhhhhhhhhhhhcccc
Q 031297           79 SRK----TSETKMPLQ-----QSVEHDESRQLINSNVQDQTSDTKIEDKQC  120 (162)
Q Consensus        79 ~~~----~~~~~~~lg-----~~~~~~e~~dL~~etl~~qf~~i~~~~~~~  120 (162)
                      +..    ..++.+|||     +||||||.+||++|||++|+..||.++...
T Consensus       240 p~~~psppse~~tcLGDlySV~WmeDSd~hdL~kETL~qQYhlVK~rt~~s  290 (477)
T KOG1348|consen  240 PGEYPSPPSEYSTCLGDLYSVNWMEDSDVHDLKKETLHQQYHLVKKRTNTS  290 (477)
T ss_pred             CCCCCCChhhcccccccceeeeeeccCccccchHHHHHHHHHHHHHhcCCC
Confidence            943    337999999     999999999999999999999999988744

>PF01650 Peptidase_C13: Peptidase C13 family; InterPro: IPR001096 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.97  E-value=1e-32  Score=232.96  Aligned_cols=122  Identities=31%  Similarity=0.483  Sum_probs=110.8

Q ss_pred             CCCCCCCCeeecCCCCccCHHHHHHHHHHHHHhCccceEEEEEeccccccccccCCC-CcEEEEeccCCCCCccceeecc
Q 031297            1 MTGHGGDEFLKFQDSEELQSHDLADAVKQMKEKHRFKELLIMVDTCQAATLFSQVPV-TNFFGSVMETIHTDSAYRTTLS   79 (162)
Q Consensus         1 ftgHGg~g~l~Fpd~~~L~a~dL~~~l~~M~~~krY~kmvf~vEaC~SgSmf~~l~~-~NV~a~Taa~~~e~S~ya~~~~   79 (162)
                      |+||||+|+|+||+.+.|++.||+++|++|++++||+||||++|||+|||||+.|+. |||+++|||+++| ++|+||| 
T Consensus       113 ~~~HG~~~~l~~~~~~~l~~~~L~~~L~~m~~~~~y~~lv~~veaC~SGs~~~~L~~~~nv~~iTAa~~~e-~Sy~~~~-  190 (256)
T PF01650_consen  113 FTGHGGPGFLKFPDGEELTADDLADALDKMHEKKRYKKLVFVVEACYSGSFFEGLLKSPNVYVITAANADE-SSYGCYC-  190 (256)
T ss_pred             EeccCCCCcccCCCcccccHHHHHHHHHHHHhhCCcceEEEEEecccccchhhccCCCCCEEEEecCCccc-ccccccc-
Confidence            689999999999988899999999999999999999999999999999999999666 9999999999999 7889999 


Q ss_pred             CCCCCCCCccc-----ccccchhhhcccchhhhhhhhhhhhhccccccccc
Q 031297           80 RKTSETKMPLQ-----QSVEHDESRQLINSNVQDQTSDTKIEDKQCPFTQR  125 (162)
Q Consensus        80 ~~~~~~~~~lg-----~~~~~~e~~dL~~etl~~qf~~i~~~~~~~~~~~~  125 (162)
                       .++.+++|+|     +||++++..+++++|+++||+.++.+....++.+.
T Consensus       191 -~~~~~~~~l~d~fs~~~m~~~~~~~~~~~Tl~~~f~~v~~~~~~shv~~~  240 (256)
T PF01650_consen  191 -SDDSIGTYLGDAFSYNWMEDSDSHPLSEETLDDQFEYVKRKTTGSHVQQY  240 (256)
T ss_pred             -cccccccEeHHHHHHHhhhhhccCCccccCHHHHHHHHHHhcccchHHhc
Confidence             2335889999     99999999999999999999999988765555544

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C13 (legumain family, clan CD). A type example is legumain from Canavalia ensiformis (Jack bean, Horse bean). The blood fluke parasite Schistosoma mansoni has two cysteine proteases in its digestive tract, one a cathepsin B-like protease, the other termed hemoglobinase [, ]. The latter has been hard to purify, free of cathepsin B, and expressed forms in Escherichia coli prove to be inactive, suggesting that hemoglobinase may act in association with cathepsin B [, ]. Plant vacuolar processing enzyme and legumain from legumes [] have been shown to have sequence and functional similarity to hemoglobinase. The catalytic residues of the family are currently unknown, but sequence alignments reveal one totally conserved cysteine and two totally conserved histidines.; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis

>KOG1349 consensus Gpi-anchor transamidase [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=4.7e-32  Score=231.42  Aligned_cols=141  Identities=33%  Similarity=0.440  Sum_probs=125.2

Q ss_pred             CCCCCCCCeeecCCCCccCHHHHHHHHHHHHHhCccceEEEEEeccccccccccCCCCcEEEEeccCCCCCccceeeccC
Q 031297            1 MTGHGGDEFLKFQDSEELQSHDLADAVKQMKEKHRFKELLIMVDTCQAATLFSQVPVTNFFGSVMETIHTDSAYRTTLSR   80 (162)
Q Consensus         1 ftgHGg~g~l~Fpd~~~L~a~dL~~~l~~M~~~krY~kmvf~vEaC~SgSmf~~l~~~NV~a~Taa~~~e~S~ya~~~~~   80 (162)
                      ||||||+|||||||.|+|+++||+++|++|+++|||+||+|++|||||.||++++..|||.|+.++-.+|+|+    +..
T Consensus       145 mtGHGgd~FlKFqd~eelts~dLadai~qm~e~~Ryneil~miDTCQaasly~~~~sPNVLav~SS~~ge~Sy----Sh~  220 (309)
T KOG1349|consen  145 LTGHGGDGFLKFQDAEELTSDDLADAIQQMWEKKRYNEILFMIDTCQAASLYERFYSPNVLAVASSLVGEPSY----SHH  220 (309)
T ss_pred             EccCCCccceecccHHHhhhHHHHHHHHHHHHhhhhceEEEEeeccchHHHHHhhcCCCeEEEeecccCCccc----ccC
Confidence            6999999999999999999999999999999999999999999999999999999999999999999999665    666


Q ss_pred             CCCCCCCccc-----ccccchhhhc-ccchhhhhhhhhhhhhccccccccch--hhhhcccccccccceeeEehh
Q 031297           81 KTSETKMPLQ-----QSVEHDESRQ-LINSNVQDQTSDTKIEDKQCPFTQRW--NAFQDNLEKIERIDSLVNYGL  147 (162)
Q Consensus        81 ~~~~~~~~lg-----~~~~~~e~~d-L~~etl~~qf~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~D~~~~~~~  147 (162)
                      .|+++|++.-     +-+++.|+.. -++.|+++.|+. ..+. .|+++++.  ..+++.|.+|.+|||||++.+
T Consensus       221 ~d~~Igv~vIDrftyy~l~flek~~~~~~~~l~dl~~s-~~~~-~~~St~gvr~dl~~r~~~~v~itDFFg~vr~  293 (309)
T KOG1349|consen  221 SDSDIGVYVIDRFTYYTLEFLEKGIGAKNRTLQDLFDS-CPKR-LLGSTPGVRTDLYQRDPKDVLITDFFGSVRI  293 (309)
T ss_pred             CCcccceeeeccchHHHHHHHHhcccchhhhHHHHHHh-CChh-hhcCCcCcccccccCCcccceeeeeccccee
Confidence            6777998887     8899999955 666689999997 4444 57776666  448999999999999999983

>COG5206 GPI8 Glycosylphosphatidylinositol transamidase (GPIT), subunit GPI8 [Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=1.3e-26  Score=200.09  Aligned_cols=146  Identities=31%  Similarity=0.398  Sum_probs=122.3

Q ss_pred             CCCCCCCCeeecCCCCccCHHHHHHHHHHHHHhCccceEEEEEeccccccccccCCCCcEEEEeccCCCCCccceeeccC
Q 031297            1 MTGHGGDEFLKFQDSEELQSHDLADAVKQMKEKHRFKELLIMVDTCQAATLFSQVPVTNFFGSVMETIHTDSAYRTTLSR   80 (162)
Q Consensus         1 ftgHGg~g~l~Fpd~~~L~a~dL~~~l~~M~~~krY~kmvf~vEaC~SgSmf~~l~~~NV~a~Taa~~~e~S~ya~~~~~   80 (162)
                      |+||||++||||||.++|+++||+++|++|+++|||+|++|++|||||.+|+++...|||.|+.++..++ |+|.-+++.
T Consensus       145 mtGHGgd~FlKFqdaeemtseDladai~ql~~~kRyNeIlfmiDTCQAnaly~k~ysPNvLavgsSeig~-ssyShhsd~  223 (382)
T COG5206         145 MTGHGGDAFLKFQDAEEMTSEDLADAISQLAAKKRYNEILFMIDTCQANALYDKSYSPNVLAVGSSEIGQ-SSYSHHSDS  223 (382)
T ss_pred             EccCCCccceecccHHHhhhHHHHHHHHHHHHhhhhceEEEEeeccccchhhhhccCCceEEEeccccCC-ccccccchh
Confidence            6999999999999999999999999999999999999999999999999999999999999999998888 777666654


Q ss_pred             CCCCCCCccc-----ccccchhhhc-ccchhhhhhhhhhhhhccccccccchhhhhcccccccccceeeEehhhhh
Q 031297           81 KTSETKMPLQ-----QSVEHDESRQ-LINSNVQDQTSDTKIEDKQCPFTQRWNAFQDNLEKIERIDSLVNYGLIIM  150 (162)
Q Consensus        81 ~~~~~~~~lg-----~~~~~~e~~d-L~~etl~~qf~~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~  150 (162)
                      .   +|+..-     .-+++.|+.| -++-||++.+.....+.-.+++.-....|.|.|..+.++|||+++.-+.+
T Consensus       224 ~---IgvaVIDrFty~~l~fle~id~~skltlqDL~~s~n~e~ihS~~gv~~~~fdr~p~d~litDFF~nVqn~~l  296 (382)
T COG5206         224 L---IGVAVIDRFTYFFLKFLEKIDIGSKLTLQDLLASLNKEPIHSHVGVRELVFDRRPSDFLITDFFANVQNSAL  296 (382)
T ss_pred             h---hhHHHhhcchHHHHHHHhhcCcCCeeEHHHHHHhcCcccccCCCCcccccccCCccceeehHhhhhhhhcch
Confidence            4   565444     6678888877 58889999998755544444444334457999999999999998876643

>PF00656 Peptidase_C14: Caspase domain; InterPro: IPR011600 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.34  E-value=0.0011  Score=52.90  Aligned_cols=53  Identities=23%  Similarity=0.300  Sum_probs=33.3

Q ss_pred             CCCCCCC--C----eeecCCCCccCHHH---HHHHHHHHHHhCc-cc-eEEEEEecccccccccc
Q 031297            1 MTGHGGD--E----FLKFQDSEELQSHD---LADAVKQMKEKHR-FK-ELLIMVDTCQAATLFSQ   54 (162)
Q Consensus         1 ftgHGg~--g----~l~Fpd~~~L~a~d---L~~~l~~M~~~kr-Y~-kmvf~vEaC~SgSmf~~   54 (162)
                      |+|||..  +    .+.-.|...+..+.   +.+.|+.+..+.. -+ | +|++|+|+||.+...
T Consensus        72 fsGHG~~~~~~~~~~~~~~d~~~~~~d~~~~~~~~l~~~~~~~~~~~~k-~~ilD~C~sg~~~~~  135 (248)
T PF00656_consen   72 FSGHGIQVDGEGGDEDSGYDGYLLPLDANLILDDELRDLLCKSLPKKPK-LFILDCCRSGGFIDG  135 (248)
T ss_dssp             EESEEETETTCCSTEEEETSSEEEEHHHHEEHHHHTSTTTTGGGTTS-E-EEEEESESSSBTBCE
T ss_pred             EeccccccCCccCcccccccceeeecchhhhHHHHHhhhhhhhccCCcc-EEeeccccCCccCCc
Confidence            6899965  2    22222432344444   6777777766622 22 5 999999999998765

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of sequences represent the p20 (20kDa) and p10 (10kDa) subunits of caspases, which together form the catalytic domain of the caspase and are derived from the p45 (45 kDa) precursor (IPR002398 from INTERPRO) []. Caspases (Cysteine-dependent ASPartyl-specific proteASE) are cysteine peptidases that belong to the MEROPS peptidase family C14 (caspase family, clan CD) based on the architecture of their catalytic dyad or triad []. Caspases are tightly regulated proteins that require zymogen activation to become active, and once active can be regulated by caspase inhibitors. Activated caspases act as cysteine proteases, using the sulphydryl group of a cysteine side chain for catalysing peptide bond cleavage at aspartyl residues in their substrates. The catalytic cysteine and histidine residues are on the p20 subunit after cleavage of the p45 precursor. Caspases are mainly involved in mediating cell death (apoptosis) [, , ]. They have two main roles within the apoptosis cascade: as initiators that trigger the cell death process, and as effectors of the process itself. Caspase-mediated apoptosis follows two main pathways, one extrinsic and the other intrinsic or mitochondrial-mediated. The extrinsic pathway involves the stimulation of various TNF (tumour necrosis factor) cell surface receptors on cells targeted to die by various TNF cytokines that are produced by cells such as cytotoxic T cells. The activated receptor transmits the signal to the cytoplasm by recruiting FADD, which forms a death-inducing signalling complex (DISC) with caspase-8. The subsequent activation of caspase-8 initiates the apoptosis cascade involving caspases 3, 4, 6, 7, 9 and 10. The intrinsic pathway arises from signals that originate within the cell as a consequence of cellular stress or DNA damage. The stimulation or inhibition of different Bcl-2 family receptors results in the leakage of cytochrome c from the mitochondria, and the formation of an apoptosome composed of cytochrome c, Apaf1 and caspase-9. The subsequent activation of caspase-9 initiates the apoptosis cascade involving caspases 3 and 7, among others. At the end of the cascade, caspases act on a variety of signal transduction proteins, cytoskeletal and nuclear proteins, chromatin-modifying proteins, DNA repair proteins and endonucleases that destroy the cell by disintegrating its contents, including its DNA. The different caspases have different domain architectures depending upon where they fit into the apoptosis cascades, however they all carry the catalytic p10 and p20 subunits. Caspases can have roles other than in apoptosis, such as caspase-1 (interleukin-1 beta convertase) (3.4.22.36 from EC), which is involved in the inflammatory process. The activation of apoptosis can sometimes lead to caspase-1 activation, providing a link between apoptosis and inflammation, such as during the targeting of infected cells. Caspases may also be involved in cell differentiation [].; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 1M72_C 2NN3_C 3V4L_A 3IBF_B 2QLF_D 2QLB_C 3IBC_B 2QL9_A 3R5K_B 3H1P_A ....

>cd00032 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis)

Probab=88.59  E-value=0.29  Score=40.64  Aligned_cols=51  Identities=14%  Similarity=0.225  Sum_probs=34.5

Q ss_pred             CCCCCCCCeeecCCCCccCHHHHHHHHHHHHHhC-ccceEEEEEeccccccc
Q 031297            1 MTGHGGDEFLKFQDSEELQSHDLADAVKQMKEKH-RFKELLIMVDTCQAATL   51 (162)
Q Consensus         1 ftgHGg~g~l~Fpd~~~L~a~dL~~~l~~M~~~k-rY~kmvf~vEaC~SgSm   51 (162)
                      |.+||..|.|.-.|.+.+.-++|.+.|..-.-.. +-|-=+|+|+||...-.
T Consensus        81 ~~sHG~~~~l~~~D~~~v~l~~i~~~f~~~~~~sl~~kPKl~~iqACRg~~~  132 (243)
T cd00032          81 ILSHGEEGGIYGTDGDVVPIDEITSLFNGDNCPSLAGKPKLFFIQACRGDEL  132 (243)
T ss_pred             ECCCCCCCEEEEecCcEEEHHHHHHhhccCCCccccCCCcEEEEECCCCCcC
Confidence            4689999999988866777777766654211111 12334889999998654

Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologs.

>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues

Probab=88.19  E-value=0.28  Score=40.95  Aligned_cols=50  Identities=14%  Similarity=0.180  Sum_probs=33.0

Q ss_pred             CCCCCCCCeeecCCCCccCHHHHHHHHHHHHH-hCccceEEEEEecccccc
Q 031297            1 MTGHGGDEFLKFQDSEELQSHDLADAVKQMKE-KHRFKELLIMVDTCQAAT   50 (162)
Q Consensus         1 ftgHGg~g~l~Fpd~~~L~a~dL~~~l~~M~~-~krY~kmvf~vEaC~SgS   50 (162)
                      |.+||..|+|.-.|+..+.-++|.+.|.--.- .-+-|==+|+|+||...-
T Consensus        80 ~~sHG~~~~l~~~D~~~v~l~~i~~~f~~~~c~~L~~kPKlffiqACRg~~  130 (241)
T smart00115       80 LLSHGEEGGIYGTDHSPLPLDEIFSLFNGDNCPSLAGKPKLFFIQACRGDE  130 (241)
T ss_pred             EcCCCCCCeEEEecCCEEEHHHHHHhccccCChhhcCCCcEEEEeCCCCCC
Confidence            46999999999888767777777666632110 111122378899998753

Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues.

>KOG1546 consensus Metacaspase involved in regulation of apoptosis [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=83.11  E-value=2  Score=38.91  Aligned_cols=19  Identities=21%  Similarity=0.350  Sum_probs=16.4

Q ss_pred             cceEEEEEecccccccccc
Q 031297           36 FKELLIMVDTCQAATLFSQ   54 (162)
Q Consensus        36 Y~kmvf~vEaC~SgSmf~~   54 (162)
                      =-|+-.++|+|+||++.+-
T Consensus       194 G~~lt~I~DSCHSGgliDl  212 (362)
T KOG1546|consen  194 GCKLTAISDSCHSGGLIDL  212 (362)
T ss_pred             CceEEEEeecccCCCcccc
Confidence            3589999999999999873

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	162
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.6 bits (107), Expect = 2e-06
 Identities = 23/170 (13%), Positives = 60/170 (35%), Gaps = 39/170 (22%)

Query: 14  DSEELQSHDLADAVKQMKEKHRFKELLIMVD------TCQAATLFSQVPVTNFFGSVMET 67
            + +L+ H +   ++++ +   ++  L+++          A  L  ++ +T  F  V + 
Sbjct: 221 SNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDF 280

Query: 68  IHTDSAYRTTLSRKTSETKMPLQQSVEHDESRQLINSNVQDQTSDTKIEDKQC-PF---- 122
           +   +    +L             ++  DE + L+   +  +  D   E     P     
Sbjct: 281 LSAATTTHISL--------DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI 332

Query: 123 --------TQRWNAFQD-NLEKIER-IDSLVN----------YGLIIMFP 152
                      W+ ++  N +K+   I+S +N          +  + +FP
Sbjct: 333 IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP 382

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.2 bits (93), Expect = 1e-04
 Identities = 21/153 (13%), Positives = 47/153 (30%), Gaps = 20/153 (13%)

Query: 4   HGGDEFLKFQDS--EELQSHDLADAVKQMKEKHRFKELLIMVDTCQAA----TLFSQVP- 56
              D    F+D+  +     D+ D  K +  K     +++  D                 
Sbjct: 17  QYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQE 76

Query: 57  --VTNFFGSVMETIHTDSAYRTTLSRKTSETKMPLQQSVEHDESRQLINSNVQDQTSDTK 114
             V  F   V+        Y+  +S   +E + P   +  + E R  + ++ Q       
Sbjct: 77  EMVQKFVEEVLRI-----NYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ------V 125

Query: 115 IEDKQCPFTQRWNAFQDNLEKIERIDSLVNYGL 147
                    Q +   +  L ++    +++  G+
Sbjct: 126 FAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV 158

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	162
3bij_A	285	Uncharacterized protein GSU0716; alpha-beta protei	97.74
4f6o_A	350	Metacaspase-1; rossmann fold, hydrolase; HET: DFH;	96.19
4af8_A	367	Metacaspase MCA2; hydrolase, cysteine peptidase, c	96.07
3uoa_B	390	Mucosa-associated lymphoid tissue lymphoma transl	95.62
2h54_A	178	Caspase-1; allosteric site, dimer interface, hydro	85.23

>3bij_A Uncharacterized protein GSU0716; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.50A {Geobacter sulfurreducens pca}

Probab=97.74  E-value=1.4e-05  Score=66.61  Aligned_cols=49  Identities=29%  Similarity=0.506  Sum_probs=38.3

Q ss_pred             CCCCCC-------------CCeeecCCCCccCHHHHHHHHHHHHHhCccceEEEEEeccccccccc
Q 031297            1 MTGHGG-------------DEFLKFQDSEELQSHDLADAVKQMKEKHRFKELLIMVDTCQAATLFS   53 (162)
Q Consensus         1 ftgHGg-------------~g~l~Fpd~~~L~a~dL~~~l~~M~~~krY~kmvf~vEaC~SgSmf~   53 (162)
                      |+|||.             +++|...|. .+..++|.+.|+.+   ++-+++++++|+|+||++.+
T Consensus        81 fSGHG~~~~~~~g~e~dg~~~~l~p~D~-~i~~~~l~~~l~~l---~~~~~~~vilD~C~SG~~~~  142 (285)
T 3bij_A           81 YSGHGGQVPDTSNDEPDGVDETWCLFDG-ELIDDELYALLGKF---AAGVRVLVFSDSCHSGTVVK  142 (285)
T ss_dssp             EESCEEEEECTTSCCTTCEEEEEECSSS-EEEHHHHHHHHTTS---CSSCEEEEEEECCCCCCHHH
T ss_pred             EcCCcccccCCCCCccCCCcceEEecCC-CccHHHHHHHHHhc---cCCCeEEEEEecCCCCcccc
Confidence            689995             247776675 67788888888665   34578999999999999876

>4f6o_A Metacaspase-1; rossmann fold, hydrolase; HET: DFH; 1.68A {Saccharomyces cerevisiae}

Probab=96.19  E-value=0.0016  Score=56.84  Aligned_cols=51  Identities=20%  Similarity=0.399  Sum_probs=35.0

Q ss_pred             CCCCCCC----------C---eeecCCC---CccCHHHHHHHHHHHHHhCccceEEEEEeccccccccc
Q 031297            1 MTGHGGD----------E---FLKFQDS---EELQSHDLADAVKQMKEKHRFKELLIMVDTCQAATLFS   53 (162)
Q Consensus         1 ftgHGg~----------g---~l~Fpd~---~~L~a~dL~~~l~~M~~~krY~kmvf~vEaC~SgSmf~   53 (162)
                      |+|||..          |   .|.-.|.   ..|..+||.+.|.+  ...+=.++++++|+|+||++.+
T Consensus       135 FSGHG~q~~d~~gdE~dG~De~lvP~D~~~~g~I~ddeL~~~L~~--~l~~g~~vt~IlD~ChSGt~ld  201 (350)
T 4f6o_A          135 YSGHGGQTEDLDGDEEDGMDDVIYPVDFETQGPIIDDEMHDIMVK--PLQQGVRLTALFDSCHSGTVLD  201 (350)
T ss_dssp             EESCEEEC-----------CEEECCTTHHHHCCEEHHHHHHHHTT--TCCTTCEEEEEECSSSCTTTTC
T ss_pred             EcCCceeccCCCCCcccCCceEEEeccCCcCCcccHHHHHHHHHh--hcCCCCeEEEEEccCCCCcccc
Confidence            6899962          2   2444441   25778888877653  1234579999999999999875

>4af8_A Metacaspase MCA2; hydrolase, cysteine peptidase, caspase/hemoglobin fold; 1.40A {Trypanosoma brucei} PDB: 4afp_A 4afv_A 4afr_A

Probab=96.07  E-value=0.0042  Score=54.48  Aligned_cols=51  Identities=14%  Similarity=0.203  Sum_probs=33.1

Q ss_pred             CCCCCCC---------C---eeecCCC---CccCHHHHHHHHHHHHHhCccceEEEEEeccccccccc
Q 031297            1 MTGHGGD---------E---FLKFQDS---EELQSHDLADAVKQMKEKHRFKELLIMVDTCQAATLFS   53 (162)
Q Consensus         1 ftgHGg~---------g---~l~Fpd~---~~L~a~dL~~~l~~M~~~krY~kmvf~vEaC~SgSmf~   53 (162)
                      |+|||..         |   .|.-.|.   ..+..+||.+.|-.  .-++=.++++++|+|+||++.+
T Consensus       175 FSGHG~q~~d~~de~dg~De~LvP~D~~~~g~I~ddeL~~lLv~--~l~~g~~v~vIlD~ChSGt~~d  240 (367)
T 4af8_A          175 YSGHGTQCKSRGDSDEKYDQCIAPVDFQKSGCIVDDDIHKLLFS--RLPEKVRLTAVFDCGHSGSIMD  240 (367)
T ss_dssp             EESCEEEECCC-----CCEEEECCTTHHHHCCEEHHHHHHHHTT--TCCTTCEEEEEEECTTCCCCTT
T ss_pred             EcCCcCccCCCCCCCCCcceEEEeecCCcCCCccHHHHHHHHHH--hccCCCEEEEEEeCCCCCcccc
Confidence            6899972         2   2444341   14666777766322  1123479999999999999976

>3uoa_B Mucosa-associated lymphoid tissue lymphoma transl protein 1; paracaspase, lymphoma, NF-KB signalling, caspase fold, immun fold, hydrolase-hydrolase inhibitor complex; 1.75A {Homo sapiens} PDB: 3uo8_B 3v55_A 3v4l_A* 3v4o_A*

Probab=95.62  E-value=0.016  Score=51.25  Aligned_cols=69  Identities=14%  Similarity=0.254  Sum_probs=42.8

Q ss_pred             CCCCCCC----CeeecCCCC-------ccCHHHHHHHHHHHHHhCccceEEEEEeccccccccc-------cCCC-CcEE
Q 031297            1 MTGHGGD----EFLKFQDSE-------ELQSHDLADAVKQMKEKHRFKELLIMVDTCQAATLFS-------QVPV-TNFF   61 (162)
Q Consensus         1 ftgHGg~----g~l~Fpd~~-------~L~a~dL~~~l~~M~~~krY~kmvf~vEaC~SgSmf~-------~l~~-~NV~   61 (162)
                      |+|||..    +||.=-|..       .+..++|.+.++.    .+=|.-+|++|||+++..++       .++. .|++
T Consensus        75 fsGHG~~~~g~~yL~p~Da~~~~~~~~~isl~~Ll~~l~~----~~~K~kL~ILDACrg~~~~~~~~~~~~~ip~~ad~L  150 (390)
T 3uoa_B           75 YAGHGYENFGNSFMVPVDAPNPYRSENCLCVQNILKLMQE----KETGLNVFLLDMCRKRNDYDDTIPILDALKVTANIV  150 (390)
T ss_dssp             EESCEEEETTEEEECCTTCCSSCCGGGSEEHHHHHHHHHH----TTCSEEEEEEESCCCCCTTCCCCCCCCCCCCCSCEE
T ss_pred             EecCccccCCcceEEecCCCccccccceeeHHHHHHHHHh----cCCCceEEEEECCCCCCcccccccccccCcccCCcE
Confidence            5799943    665444432       2455555555443    34567789999999975454       3444 5777


Q ss_pred             EEeccCCCCCcc
Q 031297           62 GSVMETIHTDSA   73 (162)
Q Consensus        62 a~Taa~~~e~S~   73 (162)
                      ...|+.+++-|+
T Consensus       151 i~yAT~pG~~A~  162 (390)
T 3uoa_B          151 FGYATCQGAEAF  162 (390)
T ss_dssp             EEESSCTTCCCE
T ss_pred             EEEEcCCCcEee
Confidence            666766776444

>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ; 1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A* 1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A* 2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A* 3d6h_A* 2hbz_A* 2hbr_A* ...

Probab=85.23  E-value=0.33  Score=38.15  Aligned_cols=47  Identities=19%  Similarity=0.268  Sum_probs=28.6

Q ss_pred             CCCCCCCCeeecCCCC-----ccCHHHHHHHHHHHHHhC---c-cceEEEEEecccccc
Q 031297            1 MTGHGGDEFLKFQDSE-----ELQSHDLADAVKQMKEKH---R-FKELLIMVDTCQAAT   50 (162)
Q Consensus         1 ftgHGg~g~l~Fpd~~-----~L~a~dL~~~l~~M~~~k---r-Y~kmvf~vEaC~SgS   50 (162)
                      |.|||..|.|.-.|..     .+.-++|...|+   ..+   . =|-=+|+++||+++-
T Consensus       115 ~lsHG~~g~i~g~D~~~~~~~~v~l~~I~~~f~---~~~CpsL~gKPKlffiqACRg~~  170 (178)
T 2h54_A          115 FMSHGIREGICGKKHSEQVPDILQLNAIFNMLN---TKNCPSLKDKPKVIIIQACRGDS  170 (178)
T ss_dssp             EESCBCSSCEECTTCCSSSCCEECHHHHHHHHS---TTTCGGGTTSCEEEEEESCSSSB
T ss_pred             EecCCCCCeEEeecCCcccCcEEEHHHHHHHHh---hcCChhhcCCceEEEEECCCCCC
Confidence            3589999988776652     355555544443   222   1 122277889999854

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	162
g1qtn.1	242	Caspase-8 {Human (Homo sapiens) [TaxId: 9606]}	94.45
g1pyo.1	257	Caspase-2 {Human (Homo sapiens) [TaxId: 9606]}	90.74
d1nw9b_	277	Caspase-9 {Human (Homo sapiens) [TaxId: 9606]}	89.9
d1m72a_	256	Caspase-1 {Fall armyworm (Spodoptera frugiperda) [	88.24

>d1nw9b_ c.17.1.1 (B:) Caspase-9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Caspase-like
superfamily: Caspase-like
family: Caspase catalytic domain
domain: Caspase-9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.90  E-value=0.052  Score=41.52  Aligned_cols=53  Identities=11%  Similarity=0.123  Sum_probs=26.4

Q ss_pred             CCCCCCC-------CeeecCCCCccCHHHHHHHHHHHH-HhCccceEEEEEeccccccccc
Q 031297            1 MTGHGGD-------EFLKFQDSEELQSHDLADAVKQMK-EKHRFKELLIMVDTCQAATLFS   53 (162)
Q Consensus         1 ftgHGg~-------g~l~Fpd~~~L~a~dL~~~l~~M~-~~krY~kmvf~vEaC~SgSmf~   53 (162)
                      |.|||..       +.+.-+|.+.+.-+++...+.... ..-+=+.-+|++|||+++.+-.
T Consensus        95 ~~gHG~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~kpki~~idaCr~~~~~~  155 (277)
T d1nw9b_          95 ILSHGCQASHLQFPGAVYGTDGCPVSVEKIVNIFNGTSCPSLGGKPKLFFIQACGGEQKDH  155 (277)
T ss_dssp             EEEEEECCCCSSSCCEEECTTSCEEEHHHHHHTTCTTTCGGGTTSCEEEEEEEEC------
T ss_pred             EeCCCcccccccccCcccCCccccccHHHHHHHhHHhhhhhcccCcEEEEEecccCCcccc
Confidence            4689964       333344555566666665553211 1222233579999999986644

>d1m72a_ c.17.1.1 (A:) Caspase-1 {Fall armyworm (Spodoptera frugiperda) [TaxId: 7108]}

class: Alpha and beta proteins (a/b)
fold: Caspase-like
superfamily: Caspase-like
family: Caspase catalytic domain
domain: Caspase-1
species: Fall armyworm (Spodoptera frugiperda) [TaxId: 7108]

Probab=88.24  E-value=0.074  Score=41.00  Aligned_cols=50  Identities=20%  Similarity=0.221  Sum_probs=29.7

Q ss_pred             CCCCCCCCeeecCCCCccCHHHHHHHHHHHHHhCccc-eEEEEEeccccccc
Q 031297            1 MTGHGGDEFLKFQDSEELQSHDLADAVKQMKEKHRFK-ELLIMVDTCQAATL   51 (162)
Q Consensus         1 ftgHGg~g~l~Fpd~~~L~a~dL~~~l~~M~~~krY~-kmvf~vEaC~SgSm   51 (162)
                      |.|||+.|+|.=-|. .+..+++...+....-...-. -=+|+++||.....
T Consensus        94 ~~~HG~~~~i~~~D~-~~~~~~~~~~~~~~~~~~L~~KPKif~lqACRg~~~  144 (256)
T d1m72a_          94 VLTHGELGMLYAKDT-HYKPDNLWYYFTADKCPTLAGKPKLFFIQACQGDRL  144 (256)
T ss_dssp             EESCEETTEEECSSS-EECTTHHHHTTSTTTCGGGTTSCEEEEEESCSSSBC
T ss_pred             EeccCcCCEEEecCC-cccchHHhhhhhhhhhHHHcCCcEEEEEecCcCCcc
Confidence            469999998865554 566666665543211111111 12799999998654