Citrus Sinensis ID: 031315

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-
Protein Sequence
MAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLLWAQNQLDEKAAYPRINDLATATLEDPAI
Secondary Structure (PSIPRED)
cHHHHHHHcccHHHHHHHHHHHccHHHHccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccccccHHHHccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHcccHHHHHHHHHHHcHHHHHccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcHHccccHHHHHHHHHHHHHHHccccccccHHHHccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccc
Coil and Loop (DISEMBL)
MAVKKAVQCGNVEDAIEKVndlnpeildtnpqLFFHLQQQRLIELIRNGKVEEALEFAQEelaprgeenQSFLEELERTVALLAFedvsncpvgdlLDISQRLKTASEVNAAILtsqshekdpklPSLLKMLLWAQNQldekaayprindlatatledpai
Flexible Loop (DISEMBL)
mavkkavqcgnvedaIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAIltsqshekdpkLPSLLKMLLWAQNQLDEKAAYPRINDlatatledpai
Low Complexity Region (SEG)
MAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVeealefaqeelaPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLLWAQNQLDEKAAYPRINDLATATLEDPAI
Disordered region (IsUnstruct)
********CGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEF**************FLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAI**************LLKMLLWAQNQLDEKAAYPRI*************
Disordered Region (DISOPRED)
MAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSH*KDPKLPSLLKMLLWAQNQLDEKAAYPRINDLATATL*****
Disordered Region (DISEMBL)
********CGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLLWAQNQLDEKAAYPRINDLATATLEDPAI
Disordered Region (DISPRO)
MAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLLWAQNQLDEKAAYPRINDLATATL*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLLWAQNQLDEKAAYPRINDLATATLEDPAI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	161	2.2.26 [Sep-21-2011]
Q54X16	228	Glucose-induced degradati	yes	no	0.975	0.688	0.656	1e-57
A7SWD3	225	Glucose-induced degradati	N/A	no	0.981	0.702	0.509	1e-41
Q5ZKQ7	228	Glucose-induced degradati	yes	no	0.987	0.697	0.518	5e-37
Q6PC55	228	Glucose-induced degradati	yes	no	0.987	0.697	0.531	1e-36
Q32L52	228	Glucose-induced degradati	yes	no	0.987	0.697	0.512	2e-36
Q9D7M1	228	Glucose-induced degradati	yes	no	0.987	0.697	0.512	7e-36
Q9NWU2	228	Glucose-induced degradati	yes	no	0.987	0.697	0.512	1e-35
Q10446	240	Uncharacterized protein C	yes	no	0.819	0.55	0.387	5e-12
Q1LUS8	604	Ran-binding protein 10 OS	no	no	0.496	0.132	0.360	6e-06
Q6VN20	620	Ran-binding protein 10 OS	no	no	0.422	0.109	0.380	4e-05

>sp|Q54X16|GID8_DICDI Glucose-induced degradation protein 8 homolog OS=Dictyostelium discoideum GN=DDB_G0279265 PE=3 SV=2

 Score =  221 bits (564), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 103/157 (65%), Positives = 125/157 (79%)

Query: 1   MAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQE 60
           MA++ A+QCG+VE  IE VNDLNPEILDTNPQL+FHLQQQ+LIELIR G   EAL+FAQ+
Sbjct: 72  MAIRSAIQCGDVEKGIEIVNDLNPEILDTNPQLYFHLQQQKLIELIRKGMTAEALKFAQD 131

Query: 61  ELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHE 120
           ELAP+GEEN  FLEELE+T++LL FED +  P+  LLD SQR KTA E+N+AIL SQS +
Sbjct: 132 ELAPQGEENNKFLEELEKTISLLVFEDTAKSPLSSLLDHSQRQKTAGELNSAILLSQSQD 191

Query: 121 KDPKLPSLLKMLLWAQNQLDEKAAYPRINDLATATLE 157
           KDPKLP++LK+L WAQ QLD K  YP+I +  T   E
Sbjct: 192 KDPKLPTILKLLKWAQTQLDSKCIYPKITNTVTGEYE 228

Dictyostelium discoideum (taxid: 44689)

>sp|A7SWD3|GID8_NEMVE Glucose-induced degradation protein 8 homolog OS=Nematostella vectensis GN=v1g247787 PE=3 SV=1

 Score =  168 bits (426), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 81/159 (50%), Positives = 121/159 (76%), Gaps = 1/159 (0%)

Query: 1   MAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQE 60
           + +++AVQ G++E A+   N LNP+ILD+N QL+FHLQQQRLIELIR   +E A+EFAQ 
Sbjct: 65  IKIREAVQKGDLEQAVSMTNKLNPDILDSNQQLYFHLQQQRLIELIREKDIEAAVEFAQG 124

Query: 61  ELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHE 120
           + + +G+E+  +LEELE+T+ALLAF++    P GDLL  SQR K ASE+NAAIL ++  +
Sbjct: 125 QFSEQGQESGRYLEELEQTMALLAFDNPEESPFGDLLHTSQRQKVASELNAAILEAEHKK 184

Query: 121 KDPKLPSLLKMLLWAQNQLD-EKAAYPRINDLATATLED 158
             PKL ++LK+LLWAQ++L+ +K  +P++ ++A+ T E+
Sbjct: 185 TQPKLANVLKLLLWAQDELEGKKVKFPKMAEIASGTFEE 223

Nematostella vectensis (taxid: 45351)

>sp|Q5ZKQ7|GID8_CHICK Glucose-induced degradation protein 8 homolog OS=Gallus gallus GN=GID8 PE=2 SV=1

 Score =  153 bits (386), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 83/160 (51%), Positives = 117/160 (73%), Gaps = 1/160 (0%)

Query: 1   MAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQE 60
           + +++ +  G +++AI  +N L+PE+LDTN  L+FHLQQQ LIELIR  + E ALEFAQ 
Sbjct: 68  IKIREMILKGQIQEAISLINSLHPELLDTNRYLYFHLQQQHLIELIRQRETEAALEFAQT 127

Query: 61  ELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHE 120
           +LA +GEE++  L E+ERT+ALLAF++    P GDLL++ QR K  SEVN A+L  ++ E
Sbjct: 128 QLAEQGEESRECLTEMERTLALLAFDNPEESPFGDLLNMMQRQKVWSEVNQAVLDYENRE 187

Query: 121 KDPKLPSLLKMLLWAQNQLDE-KAAYPRINDLATATLEDP 159
             PKL  LLK+LLWAQN+LD+ K  YP++ DL+  T+E+P
Sbjct: 188 STPKLAKLLKLLLWAQNELDQKKVKYPKMTDLSKGTIEEP 227

Gallus gallus (taxid: 9031)

>sp|Q6PC55|GID8_DANRE Glucose-induced degradation protein 8 homolog OS=Danio rerio GN=gid8 PE=2 SV=1

 Score =  152 bits (383), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 85/160 (53%), Positives = 116/160 (72%), Gaps = 1/160 (0%)

Query: 1   MAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQE 60
           + +++ V  G +++AI  +N L+PE+LDTN  L+FHLQQQ LIELIR  + E ALEFAQ 
Sbjct: 68  IKIREMVLKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHLIELIRLRETEAALEFAQS 127

Query: 61  ELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHE 120
           +LA +GEE++  L E+ERT+ALLAF++    P GDLL++ QR K  SEVN A+L  ++ E
Sbjct: 128 QLAEQGEESRECLTEMERTLALLAFDNPEESPFGDLLNMMQRQKVWSEVNQAVLDYENRE 187

Query: 121 KDPKLPSLLKMLLWAQNQLDE-KAAYPRINDLATATLEDP 159
             PKL  LLK+LLWAQN+LD+ K  Y R+ DL+  T+EDP
Sbjct: 188 STPKLAKLLKLLLWAQNELDQKKVKYSRMTDLSKGTIEDP 227

Danio rerio (taxid: 7955)

>sp|Q32L52|GID8_BOVIN Glucose-induced degradation protein 8 homolog OS=Bos taurus GN=GID8 PE=2 SV=1

 Score =  151 bits (381), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 82/160 (51%), Positives = 117/160 (73%), Gaps = 1/160 (0%)

Query: 1   MAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQE 60
           + +++ +  G +++AI  +N L+PE+LDTN  L+FHLQQQ LIELIR  + E ALEFAQ 
Sbjct: 68  IKIREMILKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHLIELIRQRETEAALEFAQT 127

Query: 61  ELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHE 120
           +LA +GEE++  L E+ERT+ALLAF++  + P GDLL++ QR K  SEVN A+L  ++ E
Sbjct: 128 QLAEQGEESRECLTEMERTLALLAFDNPEDSPFGDLLNMMQRQKVWSEVNQAVLDYENRE 187

Query: 121 KDPKLPSLLKMLLWAQNQLDE-KAAYPRINDLATATLEDP 159
             PKL  LLK+LLWAQN+LD+ K  YP++ DL+   +E+P
Sbjct: 188 STPKLAKLLKLLLWAQNELDQKKVKYPKMTDLSKGVIEEP 227

Bos taurus (taxid: 9913)

>sp|Q9D7M1|GID8_MOUSE Glucose-induced degradation protein 8 homolog OS=Mus musculus GN=Gid8 PE=2 SV=1

 Score =  149 bits (376), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 82/160 (51%), Positives = 114/160 (71%), Gaps = 1/160 (0%)

Query: 1   MAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQE 60
           + +++ +  G +++AI  +N L+PE+LDTN  L+FHLQQQ LIELIR  + E ALEFAQ 
Sbjct: 68  IKIREMILKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHLIELIRQRETEAALEFAQT 127

Query: 61  ELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHE 120
           +LA +GEE++  L E+ERT+ALLAF+     P GDLL + QR K  SEVN A+L  ++ E
Sbjct: 128 QLAEQGEESRECLTEMERTLALLAFDSPEESPFGDLLHMMQRQKVWSEVNQAVLDYENRE 187

Query: 121 KDPKLPSLLKMLLWAQNQLDE-KAAYPRINDLATATLEDP 159
             PKL  LLK+LLWAQN+LD+ K  YP++ DL+   +E+P
Sbjct: 188 STPKLAKLLKLLLWAQNELDQKKVKYPKMTDLSKGVIEEP 227

Mus musculus (taxid: 10090)

>sp|Q9NWU2|GID8_HUMAN Glucose-induced degradation protein 8 homolog OS=Homo sapiens GN=GID8 PE=1 SV=1

 Score =  148 bits (374), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 82/160 (51%), Positives = 113/160 (70%), Gaps = 1/160 (0%)

Query: 1   MAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQE 60
           + +++ +  G +++AI  +N L+PE+LDTN  L+FHLQQQ LIELIR  + E ALEFAQ 
Sbjct: 68  IKIREMILKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHLIELIRQRETEAALEFAQT 127

Query: 61  ELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHE 120
           +LA +GEE++  L E+ERT+ALLAF+     P GDLL   QR K  SEVN A+L  ++ E
Sbjct: 128 QLAEQGEESRECLTEMERTLALLAFDSPEESPFGDLLHTMQRQKVWSEVNQAVLDYENRE 187

Query: 121 KDPKLPSLLKMLLWAQNQLDE-KAAYPRINDLATATLEDP 159
             PKL  LLK+LLWAQN+LD+ K  YP++ DL+   +E+P
Sbjct: 188 STPKLAKLLKLLLWAQNELDQKKVKYPKMTDLSKGVIEEP 227

Homo sapiens (taxid: 9606)

>sp|Q10446|YDED_SCHPO Uncharacterized protein C12B10.13 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC12B10.13 PE=4 SV=1

 Score = 70.1 bits (170), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 55/142 (38%), Positives = 79/142 (55%), Gaps = 10/142 (7%)

Query: 7   VQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIEL---------IRNGKVEEALEF 57
           ++ G++  AI K+N+L PEILDTN +L F L + RL+EL           +  VE  L F
Sbjct: 81  IKSGSINSAICKLNELEPEILDTNSELLFELLRLRLLELIREVVEEKDTSDLAVERCLNF 140

Query: 58  AQEELAPRGEENQSFLEELERTVALLAFEDVSNCP-VGDLLDISQRLKTASEVNAAILTS 116
           A E LAP    NQ FL  LE T++LL F   S  P + ++L+ SQR + A+  N +IL S
Sbjct: 141 AHENLAPLAPSNQKFLNSLELTMSLLCFPPSSYSPALKNVLNYSQRERVANLANVSILKS 200

Query: 117 QSHEKDPKLPSLLKMLLWAQNQ 138
           Q    + +L SL+    W + +
Sbjct: 201 QGLSNESRLLSLVNFERWCEKE 222

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q1LUS8|RBP10_DANRE Ran-binding protein 10 OS=Danio rerio GN=ranbp10 PE=3 SV=1

 Score = 50.1 bits (118), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 31/86 (36%), Positives = 46/86 (53%), Gaps = 6/86 (6%)

Query: 40  QRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDI 99
           +R+I+  R       L+   E+L  +  +N +  + L+   +LLA+ D  NCPVG  LD 
Sbjct: 493 ERMIQFGRE------LQTLSEQLCRQYGKNATHKKMLQDAFSLLAYSDPWNCPVGQQLDP 546

Query: 100 SQRLKTASEVNAAILTSQSHEKDPKL 125
            QR    S +N+AIL SQ+  K P L
Sbjct: 547 MQREAICSALNSAILESQNLPKQPPL 572

May act as an adapter protein to couple membrane receptors to intracellular signaling pathways.

Danio rerio (taxid: 7955)

>sp|Q6VN20|RBP10_HUMAN Ran-binding protein 10 OS=Homo sapiens GN=RANBP10 PE=1 SV=1

 Score = 47.4 bits (111), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 39/71 (54%)

Query: 55  LEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAIL 114
           L+   E+L     +N +  E L+   +LLA+ D  +CPVG  LD  QR    + +N+AIL
Sbjct: 518 LQALSEQLGREYGKNLAHTEMLQDAFSLLAYSDPWSCPVGQQLDPIQREPVCAALNSAIL 577

Query: 115 TSQSHEKDPKL 125
            SQ+  K P L
Sbjct: 578 ESQNLPKQPPL 588

Acts as a guanine nucleotide exchange factor (GEF) for RAN GTPase (By similarity). May play an essential role in hemostasis and in maintaining microtubule dynamics with respect to both platelet shape and function (By similarity). May act as an adapter protein to couple membrane receptors to intracellular signaling pathways. Enhances dihydrotestosterone-induced transactivation activity of AR, as well as dexamethasone-induced transactivation activity of NR3C1, but does not affect estrogen-induced transactivation. In contrast to RANBP9, does not interact with Sos and does not activate the Ras pathway.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	161
255560784	287	Protein C20orf11, putative [Ricinus comm	1.0	0.560	0.956	3e-84
224113997	242	predicted protein [Populus trichocarpa]	1.0	0.665	0.956	7e-84
449457706	242	PREDICTED: glucose-induced degradation p	1.0	0.665	0.956	8e-84
356549385	242	PREDICTED: UPF0559 protein-like [Glycine	1.0	0.665	0.962	8e-84
359494870	293	PREDICTED: UPF0559 protein-like [Vitis v	1.0	0.549	0.944	1e-83
356555082	242	PREDICTED: UPF0559 protein-like [Glycine	1.0	0.665	0.962	1e-83
296080906	294	unnamed protein product [Vitis vinifera]	1.0	0.547	0.944	1e-83
388504878	226	unknown [Lotus japonicus]	1.0	0.712	0.944	6e-83
388518815	226	unknown [Lotus japonicus]	1.0	0.712	0.937	2e-82
224078908	226	predicted protein [Populus trichocarpa]	1.0	0.712	0.937	2e-82

>gi|255560784|ref|XP_002521405.1| Protein C20orf11, putative [Ricinus communis] gi|223539304|gb|EEF40895.1| Protein C20orf11, putative [Ricinus communis]

 Score =  315 bits (808), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 154/161 (95%), Positives = 159/161 (98%)

Query: 1   MAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQE 60
           MAVKKAVQ GNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQE
Sbjct: 127 MAVKKAVQSGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQE 186

Query: 61  ELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHE 120
           ELAPRGEENQSFLEELERTVALLAFEDV+NCPVG+LLDISQRLKTASEVNAAILTSQSHE
Sbjct: 187 ELAPRGEENQSFLEELERTVALLAFEDVTNCPVGELLDISQRLKTASEVNAAILTSQSHE 246

Query: 121 KDPKLPSLLKMLLWAQNQLDEKAAYPRINDLATATLEDPAI 161
           KDPKLPSLLKML+WAQNQLDEKAAYPRINDL+TA LEDPA+
Sbjct: 247 KDPKLPSLLKMLIWAQNQLDEKAAYPRINDLSTAMLEDPAV 287

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224113997|ref|XP_002316637.1| predicted protein [Populus trichocarpa] gi|222859702|gb|EEE97249.1| predicted protein [Populus trichocarpa]

 Score =  314 bits (805), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 154/161 (95%), Positives = 156/161 (96%)

Query: 1   MAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQE 60
           MAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQR IELIRNGKVEEALEFAQE
Sbjct: 82  MAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRFIELIRNGKVEEALEFAQE 141

Query: 61  ELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHE 120
           ELAPRGEENQSFLEELERTVALLAFEDVSNCPVG LLDISQRLKTASEVNAAILTSQS E
Sbjct: 142 ELAPRGEENQSFLEELERTVALLAFEDVSNCPVGGLLDISQRLKTASEVNAAILTSQSRE 201

Query: 121 KDPKLPSLLKMLLWAQNQLDEKAAYPRINDLATATLEDPAI 161
           KDPKLPSLLKMLLWAQNQLDEKA YPRINDL+TA LEDPA+
Sbjct: 202 KDPKLPSLLKMLLWAQNQLDEKAVYPRINDLSTAMLEDPAV 242

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449457706|ref|XP_004146589.1| PREDICTED: glucose-induced degradation protein 8 homolog [Cucumis sativus] gi|449488429|ref|XP_004158034.1| PREDICTED: glucose-induced degradation protein 8 homolog [Cucumis sativus]

 Score =  314 bits (804), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 154/161 (95%), Positives = 158/161 (98%)

Query: 1   MAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQE 60
           MAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQE
Sbjct: 82  MAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQE 141

Query: 61  ELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHE 120
           ELAPRGEENQSFLEELERTVALLAFEDVSNCPV DLLDISQRLKTASEVNAAILTSQSHE
Sbjct: 142 ELAPRGEENQSFLEELERTVALLAFEDVSNCPVRDLLDISQRLKTASEVNAAILTSQSHE 201

Query: 121 KDPKLPSLLKMLLWAQNQLDEKAAYPRINDLATATLEDPAI 161
           KDPKLPSLLKML+WAQ+QLDEKAAYPRINDL+TA LEDP +
Sbjct: 202 KDPKLPSLLKMLMWAQDQLDEKAAYPRINDLSTAMLEDPPV 242

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356549385|ref|XP_003543074.1| PREDICTED: UPF0559 protein-like [Glycine max]

 Score =  314 bits (804), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 155/161 (96%), Positives = 159/161 (98%)

Query: 1   MAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQE 60
           MAVKKAVQ GNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQE
Sbjct: 82  MAVKKAVQSGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQE 141

Query: 61  ELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHE 120
           ELAPRGEENQSFLEELERTVALLAFEDVSNCPVG+LLDISQRLKTASEVNAAILTSQSHE
Sbjct: 142 ELAPRGEENQSFLEELERTVALLAFEDVSNCPVGELLDISQRLKTASEVNAAILTSQSHE 201

Query: 121 KDPKLPSLLKMLLWAQNQLDEKAAYPRINDLATATLEDPAI 161
           KDPKLPSLLKMLL AQNQLDEKAAYPR+NDL+TATLEDPA+
Sbjct: 202 KDPKLPSLLKMLLCAQNQLDEKAAYPRVNDLSTATLEDPAV 242

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359494870|ref|XP_002264581.2| PREDICTED: UPF0559 protein-like [Vitis vinifera]

 Score =  313 bits (803), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 152/161 (94%), Positives = 159/161 (98%)

Query: 1   MAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQE 60
           MAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKV+EALEFAQE
Sbjct: 133 MAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVDEALEFAQE 192

Query: 61  ELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHE 120
           ELAPRGEENQSFLEELE+TVALLAFED SNCPVG+LLDISQRLKTASEVNAAILTSQSHE
Sbjct: 193 ELAPRGEENQSFLEELEKTVALLAFEDFSNCPVGELLDISQRLKTASEVNAAILTSQSHE 252

Query: 121 KDPKLPSLLKMLLWAQNQLDEKAAYPRINDLATATLEDPAI 161
           KDPKLPSLLKML+WAQNQLD+KAAYPRINDL+TA LEDPA+
Sbjct: 253 KDPKLPSLLKMLIWAQNQLDDKAAYPRINDLSTARLEDPAV 293

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356555082|ref|XP_003545868.1| PREDICTED: UPF0559 protein-like [Glycine max]

 Score =  313 bits (803), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 155/161 (96%), Positives = 159/161 (98%)

Query: 1   MAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQE 60
           MAVKKAVQ GNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQE
Sbjct: 82  MAVKKAVQSGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQE 141

Query: 61  ELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHE 120
           ELAPRGEENQSFLEELERTVALLAFEDVSNCPVG+LLDISQRLKTASEVNAAILTSQSHE
Sbjct: 142 ELAPRGEENQSFLEELERTVALLAFEDVSNCPVGELLDISQRLKTASEVNAAILTSQSHE 201

Query: 121 KDPKLPSLLKMLLWAQNQLDEKAAYPRINDLATATLEDPAI 161
           KDPKLPSLLKMLL AQNQLDEKAAYPR+NDL+TATLEDPA+
Sbjct: 202 KDPKLPSLLKMLLCAQNQLDEKAAYPRVNDLSTATLEDPAV 242

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296080906|emb|CBI18750.3| unnamed protein product [Vitis vinifera]

 Score =  313 bits (803), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 152/161 (94%), Positives = 159/161 (98%)

Query: 1   MAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQE 60
           MAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKV+EALEFAQE
Sbjct: 134 MAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVDEALEFAQE 193

Query: 61  ELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHE 120
           ELAPRGEENQSFLEELE+TVALLAFED SNCPVG+LLDISQRLKTASEVNAAILTSQSHE
Sbjct: 194 ELAPRGEENQSFLEELEKTVALLAFEDFSNCPVGELLDISQRLKTASEVNAAILTSQSHE 253

Query: 121 KDPKLPSLLKMLLWAQNQLDEKAAYPRINDLATATLEDPAI 161
           KDPKLPSLLKML+WAQNQLD+KAAYPRINDL+TA LEDPA+
Sbjct: 254 KDPKLPSLLKMLIWAQNQLDDKAAYPRINDLSTARLEDPAV 294

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388504878|gb|AFK40505.1| unknown [Lotus japonicus]

 Score =  311 bits (797), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 152/161 (94%), Positives = 157/161 (97%)

Query: 1   MAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQE 60
           MAVKKAVQ GNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQE
Sbjct: 66  MAVKKAVQSGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQE 125

Query: 61  ELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHE 120
           ELAPRGEEN SFLEELERTVALLAFEDVSNCPVG+LLDISQRLKTASEVNAAILTSQSHE
Sbjct: 126 ELAPRGEENHSFLEELERTVALLAFEDVSNCPVGELLDISQRLKTASEVNAAILTSQSHE 185

Query: 121 KDPKLPSLLKMLLWAQNQLDEKAAYPRINDLATATLEDPAI 161
           KDPKLPSLLKML+WAQNQLDEKAAYP IND++ ATLEDPA+
Sbjct: 186 KDPKLPSLLKMLIWAQNQLDEKAAYPHINDISEATLEDPAV 226

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388518815|gb|AFK47469.1| unknown [Lotus japonicus]

 Score =  310 bits (793), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 151/161 (93%), Positives = 157/161 (97%)

Query: 1   MAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQE 60
           MAVKKAVQ G+VEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQE
Sbjct: 66  MAVKKAVQSGDVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQE 125

Query: 61  ELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHE 120
           ELAPRGEEN SFLEELERTVALLAFEDVSNCPVG+LLDISQRLKTASEVNAAILTSQSHE
Sbjct: 126 ELAPRGEENHSFLEELERTVALLAFEDVSNCPVGELLDISQRLKTASEVNAAILTSQSHE 185

Query: 121 KDPKLPSLLKMLLWAQNQLDEKAAYPRINDLATATLEDPAI 161
           KDPKLPSLLKML+WAQNQLDEKAAYP IND++ ATLEDPA+
Sbjct: 186 KDPKLPSLLKMLIWAQNQLDEKAAYPHINDISKATLEDPAV 226

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224078908|ref|XP_002305675.1| predicted protein [Populus trichocarpa] gi|222848639|gb|EEE86186.1| predicted protein [Populus trichocarpa]

 Score =  309 bits (792), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 151/161 (93%), Positives = 156/161 (96%)

Query: 1   MAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQE 60
           MA KKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKV EAL+FAQE
Sbjct: 66  MAAKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVNEALQFAQE 125

Query: 61  ELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHE 120
           ELAPRGEE+ SFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHE
Sbjct: 126 ELAPRGEEDHSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHE 185

Query: 121 KDPKLPSLLKMLLWAQNQLDEKAAYPRINDLATATLEDPAI 161
           KDPKLPSLLKMLLWAQNQLDEKAAYPRI +L+TA LEDPA+
Sbjct: 186 KDPKLPSLLKMLLWAQNQLDEKAAYPRIKNLSTAMLEDPAV 226

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	161
TAIR|locus:2008460	243	AT1G61150 "AT1G61150" [Arabido	0.993	0.658	0.787	1.8e-62
DICTYBASE|DDB_G0279265	228	DDB_G0279265 "UPF0559 protein"	0.975	0.688	0.598	5.4e-47
UNIPROTKB|Q5ZKQ7	228	GID8 "Glucose-induced degradat	0.975	0.688	0.468	3.1e-35
ZFIN|ZDB-GENE-040426-1669	250	gid8a "GID complex subunit 8 h	0.975	0.628	0.481	8.3e-35
UNIPROTKB|Q32L52	228	GID8 "Glucose-induced degradat	0.975	0.688	0.462	1.1e-34
MGI|MGI:1923675	228	Gid8 "GID complex subunit 8 ho	0.975	0.688	0.462	2.8e-34
UNIPROTKB|Q9NWU2	228	GID8 "Glucose-induced degradat	0.975	0.688	0.462	4.6e-34
TAIR|locus:2137926	224	AT4G09300 "AT4G09300" [Arabido	0.944	0.678	0.5	8.5e-33
TAIR|locus:2197404	277	AT1G11110 "AT1G11110" [Arabido	0.944	0.548	0.515	1.1e-32
ASPGD|ASPL0000064925	271	AN7501 [Emericella nidulans (t	0.925	0.549	0.356	1.7e-18

TAIR|locus:2008460 AT1G61150 "AT1G61150" [Arabidopsis thaliana (taxid:3702)]

 Score = 638 (229.6 bits), Expect = 1.8e-62, P = 1.8e-62
 Identities = 126/160 (78%), Positives = 135/160 (84%)

Query:     1 MAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVXXXXXXXXX 60
             MAVKKAVQ GNVEDAIEKVNDLNPEILDTNP+LFFHLQQQRLIELIR GK          
Sbjct:    83 MAVKKAVQNGNVEDAIEKVNDLNPEILDTNPELFFHLQQQRLIELIRQGKTEEALEFAQE 142

Query:    61 XXXPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHE 120
                PRGEENQ+FLEELE+TVALL F+D S CPV +LLD+S RLKTASEVNAAILTSQSHE
Sbjct:   143 ELAPRGEENQAFLEELEKTVALLVFDDASTCPVKELLDLSHRLKTASEVNAAILTSQSHE 202

Query:   121 KDPKLPSLLKMLLWAQNQLDEKAAYPRINDLATATLEDPA 160
             KDPKLPSLLKML+WAQ QLDEKA YP INDL+T  LEDP+
Sbjct:   203 KDPKLPSLLKMLIWAQTQLDEKAVYPHINDLSTGKLEDPS 242

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

DICTYBASE|DDB_G0279265 DDB_G0279265 "UPF0559 protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 492 (178.3 bits), Expect = 5.4e-47, P = 5.4e-47
 Identities = 94/157 (59%), Positives = 114/157 (72%)

Query:     1 MAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVXXXXXXXXX 60
             MA++ A+QCG+VE  IE VNDLNPEILDTNPQL+FHLQQQ+LIELIR G           
Sbjct:    72 MAIRSAIQCGDVEKGIEIVNDLNPEILDTNPQLYFHLQQQKLIELIRKGMTAEALKFAQD 131

Query:    61 XXXPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHE 120
                P+GEEN  FLEELE+T++LL FED +  P+  LLD SQR KTA E+N+AIL SQS +
Sbjct:   132 ELAPQGEENNKFLEELEKTISLLVFEDTAKSPLSSLLDHSQRQKTAGELNSAILLSQSQD 191

Query:   121 KDPKLPSLLKMLLWAQNQLDEKAAYPRINDLATATLE 157
             KDPKLP++LK+L WAQ QLD K  YP+I +  T   E
Sbjct:   192 KDPKLPTILKLLKWAQTQLDSKCIYPKITNTVTGEYE 228

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|Q5ZKQ7 GID8 "Glucose-induced degradation protein 8 homolog" [Gallus gallus (taxid:9031)]

 Score = 381 (139.2 bits), Expect = 3.1e-35, P = 3.1e-35
 Identities = 74/158 (46%), Positives = 106/158 (67%)

Query:     3 VKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVXXXXXXXXXXX 62
             +++ +  G +++AI  +N L+PE+LDTN  L+FHLQQQ LIELIR  +            
Sbjct:    70 IREMILKGQIQEAISLINSLHPELLDTNRYLYFHLQQQHLIELIRQRETEAALEFAQTQL 129

Query:    63 XPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHEKD 122
               +GEE++  L E+ERT+ALLAF++    P GDLL++ QR K  SEVN A+L  ++ E  
Sbjct:   130 AEQGEESRECLTEMERTLALLAFDNPEESPFGDLLNMMQRQKVWSEVNQAVLDYENREST 189

Query:   123 PKLPSLLKMLLWAQNQLDEKAA-YPRINDLATATLEDP 159
             PKL  LLK+LLWAQN+LD+K   YP++ DL+  T+E+P
Sbjct:   190 PKLAKLLKLLLWAQNELDQKKVKYPKMTDLSKGTIEEP 227

GO:0005634 "nucleus" evidence=IEA

ZFIN|ZDB-GENE-040426-1669 gid8a "GID complex subunit 8 homolog a (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 377 (137.8 bits), Expect = 8.3e-35, P = 8.3e-35
 Identities = 76/158 (48%), Positives = 105/158 (66%)

Query:     3 VKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVXXXXXXXXXXX 62
             +++ V  G +++AI  +N L+PE+LDTN  L+FHLQQQ LIELIR  +            
Sbjct:    92 IREMVLKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHLIELIRLRETEAALEFAQSQL 151

Query:    63 XPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHEKD 122
               +GEE++  L E+ERT+ALLAF++    P GDLL++ QR K  SEVN A+L  ++ E  
Sbjct:   152 AEQGEESRECLTEMERTLALLAFDNPEESPFGDLLNMMQRQKVWSEVNQAVLDYENREST 211

Query:   123 PKLPSLLKMLLWAQNQLDEKAA-YPRINDLATATLEDP 159
             PKL  LLK+LLWAQN+LD+K   Y R+ DL+  T+EDP
Sbjct:   212 PKLAKLLKLLLWAQNELDQKKVKYSRMTDLSKGTIEDP 249

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|Q32L52 GID8 "Glucose-induced degradation protein 8 homolog" [Bos taurus (taxid:9913)]

 Score = 376 (137.4 bits), Expect = 1.1e-34, P = 1.1e-34
 Identities = 73/158 (46%), Positives = 106/158 (67%)

Query:     3 VKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVXXXXXXXXXXX 62
             +++ +  G +++AI  +N L+PE+LDTN  L+FHLQQQ LIELIR  +            
Sbjct:    70 IREMILKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHLIELIRQRETEAALEFAQTQL 129

Query:    63 XPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHEKD 122
               +GEE++  L E+ERT+ALLAF++  + P GDLL++ QR K  SEVN A+L  ++ E  
Sbjct:   130 AEQGEESRECLTEMERTLALLAFDNPEDSPFGDLLNMMQRQKVWSEVNQAVLDYENREST 189

Query:   123 PKLPSLLKMLLWAQNQLDEKAA-YPRINDLATATLEDP 159
             PKL  LLK+LLWAQN+LD+K   YP++ DL+   +E+P
Sbjct:   190 PKLAKLLKLLLWAQNELDQKKVKYPKMTDLSKGVIEEP 227

GO:0005634 "nucleus" evidence=IEA

MGI|MGI:1923675 Gid8 "GID complex subunit 8 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 372 (136.0 bits), Expect = 2.8e-34, P = 2.8e-34
 Identities = 73/158 (46%), Positives = 103/158 (65%)

Query:     3 VKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVXXXXXXXXXXX 62
             +++ +  G +++AI  +N L+PE+LDTN  L+FHLQQQ LIELIR  +            
Sbjct:    70 IREMILKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHLIELIRQRETEAALEFAQTQL 129

Query:    63 XPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHEKD 122
               +GEE++  L E+ERT+ALLAF+     P GDLL + QR K  SEVN A+L  ++ E  
Sbjct:   130 AEQGEESRECLTEMERTLALLAFDSPEESPFGDLLHMMQRQKVWSEVNQAVLDYENREST 189

Query:   123 PKLPSLLKMLLWAQNQLDEKAA-YPRINDLATATLEDP 159
             PKL  LLK+LLWAQN+LD+K   YP++ DL+   +E+P
Sbjct:   190 PKLAKLLKLLLWAQNELDQKKVKYPKMTDLSKGVIEEP 227

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q9NWU2 GID8 "Glucose-induced degradation protein 8 homolog" [Homo sapiens (taxid:9606)]

 Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
 Identities = 73/158 (46%), Positives = 102/158 (64%)

Query:     3 VKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVXXXXXXXXXXX 62
             +++ +  G +++AI  +N L+PE+LDTN  L+FHLQQQ LIELIR  +            
Sbjct:    70 IREMILKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHLIELIRQRETEAALEFAQTQL 129

Query:    63 XPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHEKD 122
               +GEE++  L E+ERT+ALLAF+     P GDLL   QR K  SEVN A+L  ++ E  
Sbjct:   130 AEQGEESRECLTEMERTLALLAFDSPEESPFGDLLHTMQRQKVWSEVNQAVLDYENREST 189

Query:   123 PKLPSLLKMLLWAQNQLDEKAA-YPRINDLATATLEDP 159
             PKL  LLK+LLWAQN+LD+K   YP++ DL+   +E+P
Sbjct:   190 PKLAKLLKLLLWAQNELDQKKVKYPKMTDLSKGVIEEP 227

GO:0005634 "nucleus" evidence=IEA

TAIR|locus:2137926 AT4G09300 "AT4G09300" [Arabidopsis thaliana (taxid:3702)]

 Score = 358 (131.1 bits), Expect = 8.5e-33, P = 8.5e-33
 Identities = 79/158 (50%), Positives = 99/158 (62%)

Query:     1 MAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVXXXXXXXXX 60
             + V KA++  N+EDAIEK+N LNPEI+ T+    FHL QQ LIELIR  K          
Sbjct:    66 LEVIKAIESRNLEDAIEKLNALNPEIIKTS----FHLHQQMLIELIREKKTEEAVAFAQE 121

Query:    61 XXXPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHE 120
                P  EEN++   ELE+TV +L  E + NCP  +L   SQ ++TAS VN AI TSQ+ E
Sbjct:   122 KLAPLAEENEALQRELEKTVCILVTEGLPNCPSRELFHNSQWIRTASHVNEAIHTSQTGE 181

Query:   121 KDPKLPSLLKMLLWAQNQLDEKAAY--PRINDLATATL 156
             K P+L  LLK L+W QNQLDEK  Y  PR+ND +T  L
Sbjct:   182 KGPELERLLKELIWTQNQLDEKTVYVYPRMNDFSTGQL 219

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2197404 AT1G11110 "AT1G11110" [Arabidopsis thaliana (taxid:3702)]

 Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
 Identities = 82/159 (51%), Positives = 105/159 (66%)

Query:     1 MAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNG-KVXXXXXXXX 59
             +AVK+ ++ G++EDA+EK+N +NPEIL TN    F L QQR IE IR G  +        
Sbjct:   113 LAVKRDIESGDLEDAVEKLNAINPEILKTN----FSLNQQRFIERIRIGVTIKETFNFAE 168

Query:    60 XXXXPRGEENQSFLEELERTVALLAFEDVSNCPVGD--LLDISQRLKTASEVNAAILTSQ 117
                 P  E+N +FLEELE+T+A+L F D+ + P  +  LLD S+  KTA+EVNAAILTSQ
Sbjct:   169 KELKPLVEQNLAFLEELEKTMAILRFRDLPDIPEAERELLDNSRWFKTAAEVNAAILTSQ 228

Query:   118 SHEKDPKLPSLLKMLLWAQNQLDEKAAYPRINDLATATL 156
             +  K PKL  LLKML W QNQLDEK  YPR++ L T  L
Sbjct:   229 TGLKCPKLLDLLKMLTWTQNQLDEKVEYPRMSVLPTGQL 267

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

ASPGD|ASPL0000064925 AN7501 [Emericella nidulans (taxid:162425)]

 Score = 223 (83.6 bits), Expect = 1.7e-18, P = 1.7e-18
 Identities = 56/157 (35%), Positives = 82/157 (52%)

Query:     3 VKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRN------GKVXXXXX 56
             ++ A+  GN++ AIEK+N+LNP+ILD NP L F L + +L+ELIR+      G +     
Sbjct:    75 IRTAIYSGNIQAAIEKINELNPQILDENPSLHFSLLRLQLVELIRSCSVNPDGDITPALE 134

Query:    57 XXXXXXXPRGEENQSFLEELERTVALLAFEDVSNCP-VGDLLDISQRLKTASEVNAAILT 115
                    PR   N  FLE+LE+T+ALL +   +  P +  LL    R    ++VNAAIL 
Sbjct:   135 FATSQLAPRAPTNPQFLEDLEKTLALLIYPKENLTPSLAPLLHSDLRRDIYAKVNAAILQ 194

Query:   116 SQSHEKDPKLPSLLKMLLWAQNQLDE-KAAYPRINDL 151
              Q    +  L    ++  WA+ +  E K   P   DL
Sbjct:   195 DQGARTEALLCDFARLYAWAEQKAREAKKDIPDKLDL 231

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9D7M1	GID8_MOUSE	No assigned EC number	0.5125	0.9875	0.6973	yes	no
Q5ZKQ7	GID8_CHICK	No assigned EC number	0.5187	0.9875	0.6973	yes	no
Q9NWU2	GID8_HUMAN	No assigned EC number	0.5125	0.9875	0.6973	yes	no
Q54X16	GID8_DICDI	No assigned EC number	0.6560	0.9751	0.6885	yes	no
Q6PC55	GID8_DANRE	No assigned EC number	0.5312	0.9875	0.6973	yes	no
Q32L52	GID8_BOVIN	No assigned EC number	0.5125	0.9875	0.6973	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	161
pfam10607	144	pfam10607, CLTH, CTLH/CRA C-terminal to LisH motif	3e-40
smart00757	99	smart00757, CRA, CT11-RanBPM	3e-25
smart00668	58	smart00668, CTLH, C-terminal to LisH motif	5e-11

>gnl|CDD|220824 pfam10607, CLTH, CTLH/CRA C-terminal to LisH motif domain

 Score =  132 bits (334), Expect = 3e-40
 Identities = 55/139 (39%), Positives = 81/139 (58%), Gaps = 3/139 (2%)

Query: 3   VKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEEL 62
           +++++  G++E+A+E  N+  PE+L  N  L F L+ Q+ IELIR GK+ EALE+A+E L
Sbjct: 8   IRESLLNGDLEEALEWCNENKPELLKINSNLEFELRLQQFIELIREGKILEALEYARENL 67

Query: 63  APRGEENQSFLEELERTVALLAFEDVSNC-PVGDLLDISQRLKTASEVNAAILTSQSHEK 121
           AP   E    L+E+++ + LLAF D ++  P   LL  S+  K A+E N AIL       
Sbjct: 68  APFFNE--QHLKEIQKLMGLLAFPDPTDSSPYKSLLSPSRWEKLANEFNRAILKLLGLSS 125

Query: 122 DPKLPSLLKMLLWAQNQLD 140
           +  L  LLK  L A   L 
Sbjct: 126 ESPLEILLKAGLSALKTLL 144

RanBPM is a scaffolding protein and is important in regulating cellular function in both the immune system and the nervous system. This domain is at the C-terminus of the proteins and is the binding domain for the CRA motif (for CT11-RanBPM), which is comprised of approximately 100 amino acids at the C terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined. This region contains CTLH and CRA domains annotated by SMART; however, these may be a single domain, and it is refereed to as a C-terminal to LisH motif. Length = 144

>gnl|CDD|214806 smart00757, CRA, CT11-RanBPM

 Score = 92.4 bits (230), Expect = 3e-25
 Identities = 44/96 (45%), Positives = 59/96 (61%), Gaps = 2/96 (2%)

Query: 49  GKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNC-PVGDLLDISQRLKTAS 107
           GK+EEAL +A+E LAP  +E++ FL+ELE+T+ALLA+ D +   P  +LL  SQR K A 
Sbjct: 1   GKIEEALAYARELLAPFAKEHEKFLKELEKTMALLAYPDPTEPSPYKELLSPSQREKLAE 60

Query: 108 EVNAAILTSQS-HEKDPKLPSLLKMLLWAQNQLDEK 142
           E+N+AIL        +  L  LL   L A   L EK
Sbjct: 61  ELNSAILELLHGKSSESPLEILLSAGLAALKTLLEK 96

protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi). Length = 99

>gnl|CDD|128914 smart00668, CTLH, C-terminal to LisH motif

 Score = 54.5 bits (132), Expect = 5e-11
 Identities = 18/51 (35%), Positives = 37/51 (72%)

Query: 3  VKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEE 53
          +++ +  G+ ++A+E ++ L P +L+ N +L F L++Q+ +EL+R GK+EE
Sbjct: 8  IRELILKGDWDEALEWLSSLKPPLLERNSKLEFELRKQKFLELVRQGKLEE 58

Alpha-helical motif of unknown function. Length = 58

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	161
KOG2659	228	consensus LisH motif-containing protein [Cytoskele	100.0
PF10607	145	CLTH: CTLH/CRA C-terminal to LisH motif domain; In	100.0
KOG0396	389	consensus Uncharacterized conserved protein [Funct	99.88
smart00757	99	CRA CT11-RanBPM. protein-protein interaction domai	99.86
KOG2817	394	consensus Predicted E3 ubiquitin ligase [Posttrans	99.76
smart00668	58	CTLH C-terminal to LisH motif. Alpha-helical motif	99.39
KOG1477	469	consensus SPRY domain-containing proteins [General	98.74
KOG0293	519	consensus WD40 repeat-containing protein [Function	94.32
COG5109	396	Uncharacterized conserved protein, contains RING Z	92.9
cd08044	133	TAF5_NTD2 TAF5_NTD2 is the second conserved N-term	84.2

>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]

Probab=100.00  E-value=8.8e-37  Score=240.86  Aligned_cols=158  Identities=59%  Similarity=0.872  Sum_probs=153.3

Q ss_pred             hhhhhhhcCCHHHHHHHhhcCCccccccCcchhhhhhHHHHHHHHHccchHHHHHHHHHhcCCCCccchHHHHHHHHHhH
Q 031315            2 AVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVA   81 (161)
Q Consensus         2 ~I~~~I~~G~i~~Ai~~i~~~~p~ll~~~~~l~F~L~~q~fIElir~~~~~eAl~yar~~l~~~~~~~~~~~~~l~~~~~   81 (161)
                      +|+.+|.+|+|++||+.+++++|++|++|.+|.|+|++|+||||||.|..++||+|||+++++++..+++++.+++++|+
T Consensus        70 ~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~l~F~Lq~q~lIEliR~~~~eeal~F~q~~LA~~a~e~~~~~~elE~~l~  149 (228)
T KOG2659|consen   70 QIRRAIEEGQIEEAIEKVNQLNPEILDTNRELFFHLQQLHLIELIREGKTEEALEFAQTKLAPFAEENPKKMEELERTLA  149 (228)
T ss_pred             HHHHHHHhccHHHHHHHHHHhChHHHccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHccccccccHHHHHHHHHHHH
Confidence            69999999999999999999999999999999999999999999999999999999999999999988999999999999


Q ss_pred             HHhccccCCCcchhhhhHHHHhhhHHHHHHHHhhhccccCCCChhHHHHHHHHHHhhhhh-hcccccccccccccccCC
Q 031315           82 LLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLLWAQNQLDE-KAAYPRINDLATATLEDP  159 (161)
Q Consensus        82 LLay~~~~~sp~~~Ll~~~~r~~la~~vn~aiL~~~~~~~~~~L~~l~k~~~~~~~~l~~-~~~~p~~~~~~~~~~~~~  159 (161)
                      +|+|++|+.||++++++.++|.++|+.||++||.+++....|.|+.++|...|++.++.. +.++|+++++.+|.+++|
T Consensus       150 lLvf~~~~~sp~~~l~~~s~R~kvA~~vN~aiL~~~~~~~~~~l~~llk~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  228 (228)
T KOG2659|consen  150 LLVFELSQESPSAELLSQSLRQKVASEVNSAILASQEHESEPKLPFLLKLISWAQEELDREKFSEPHFKDLTKIKSEEP  228 (228)
T ss_pred             HHHcCCcccCcHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHhHhhccccccCCccccccCCC
Confidence            999999999999999999999999999999999999999999999999999999999875 589999999999998764

>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10

Probab=100.00  E-value=6.1e-35  Score=217.03  Aligned_cols=135  Identities=39%  Similarity=0.590  Sum_probs=128.3

Q ss_pred             hhhhhhhcCCHHHHHHHhhcCCccccccCcchhhhhhHHHHHHHHHccchHHHHHHHHHhcCCCCccchHHHHHHHHHhH
Q 031315            2 AVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVA   81 (161)
Q Consensus         2 ~I~~~I~~G~i~~Ai~~i~~~~p~ll~~~~~l~F~L~~q~fIElir~~~~~eAl~yar~~l~~~~~~~~~~~~~l~~~~~   81 (161)
                      +|+++|++||+++|++|+++++|.+++.++.++|.|++|+|||||++|++.+||+|||+++.++..   .+.++++++|+
T Consensus         7 ~I~~~I~~g~i~~Ai~w~~~~~~~l~~~~~~L~f~L~~q~fiell~~~~~~~Ai~y~r~~l~~~~~---~~~~~l~~~~~   83 (145)
T PF10607_consen    7 KIRQAILNGDIDPAIEWLNENFPELLKRNSSLEFELRCQQFIELLREGDIMEAIEYARKHLSPFND---EFLEELKKLMS   83 (145)
T ss_pred             HHHHHHHcCCHHHHHHHHHHcCHHHHhcCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhHH---HHHHHHHHHHH
Confidence            699999999999999999999999999999999999999999999999999999999999966543   58899999999


Q ss_pred             HHhccccCC---CcchhhhhHHHHhhhHHHHHHHHhhhccccCCCChhHHHHHHHHHHhhh
Q 031315           82 LLAFEDVSN---CPVGDLLDISQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLLWAQNQL  139 (161)
Q Consensus        82 LLay~~~~~---sp~~~Ll~~~~r~~la~~vn~aiL~~~~~~~~~~L~~l~k~~~~~~~~l  139 (161)
                      +|||++|++   +||++++++++|+.||+.||+++|..+|.+.+|+|+.++++..|+...+
T Consensus        84 lL~~~~~~~~~~s~~~~l~~~~~~~~la~~~~~~~l~~~~~~~~s~L~~~~~~g~~~l~~l  144 (145)
T PF10607_consen   84 LLAYPDPEEPLPSPYKELLSPERREELAEEFNSAILKSYGLPKESPLEVILKAGLSALKTL  144 (145)
T ss_pred             HHHcCCcccccchHHHHHhChHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHhhhc
Confidence            999999987   8999999999999999999999999999999999999999999997654

RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].

>KOG0396 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.88  E-value=1.5e-22  Score=168.39  Aligned_cols=131  Identities=25%  Similarity=0.329  Sum_probs=122.4

Q ss_pred             hhhhhhhcCCHHHHHHHhhcCCccccccCcchhhhhhHHHHHHHHHccchHHHHHHHHHhcCCCCccchHHHHHHHHHhH
Q 031315            2 AVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVA   81 (161)
Q Consensus         2 ~I~~~I~~G~i~~Ai~~i~~~~p~ll~~~~~l~F~L~~q~fIElir~~~~~eAl~yar~~l~~~~~~~~~~~~~l~~~~~   81 (161)
                      .|+++|+.|++.+|++||++|.-.|-+.+|.|+|.++.|+|||||+.++..+||+||++||++++.   ++.++++.+||
T Consensus       158 ~I~~sll~~~l~~~Lswc~ehk~~LkK~~S~lEf~lRlQefIELi~~~~~~~Ai~~akk~f~~~~~---~~~~~Lk~a~g  234 (389)
T KOG0396|consen  158 GIRDSLLAGELEPALSWCKEHKVELKKEESSLEFQLRLQEFIELIKVDNYDKAIAFAKKHFAPWAK---SHKSDLKLAMG  234 (389)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhh---hhHHHHHHHHH
Confidence            589999999999999999999999999999999999999999999999999999999999999985   68899999999


Q ss_pred             HHhcc-ccCCCcchhhhhHHHHhhhHHHHHHHHhhhccccCCCChhHHHHHHHHH
Q 031315           82 LLAFE-DVSNCPVGDLLDISQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLLWA  135 (161)
Q Consensus        82 LLay~-~~~~sp~~~Ll~~~~r~~la~~vn~aiL~~~~~~~~~~L~~l~k~~~~~  135 (161)
                      +|||+ .++.++|..+++..||+.+++.|-+..+..+|.+..|+|...+.+=..+
T Consensus       235 ~laF~~~t~~sky~~l~~~~rw~~l~~lF~s~a~~l~~i~~~~~L~~~l~~GLsa  289 (389)
T KOG0396|consen  235 LLAFPKYTSSSKYLNLLTADRWSVLADLFLSEALKLFGIPINPALTIYLQAGLSA  289 (389)
T ss_pred             hhcCccccCcccccCcccHHHHHHHHHHhhHHHHHHhCCCCCcHHHHHHHhhhhh
Confidence            99999 4677889999999999999999999999999999999998887754433

>smart00757 CRA CT11-RanBPM

Probab=99.86  E-value=2.2e-21  Score=135.30  Aligned_cols=93  Identities=46%  Similarity=0.568  Sum_probs=87.7

Q ss_pred             chHHHHHHHHHhcCCCCccchHHHHHHHHHhHHHhcccc-CCCcchhhhhHHHHhhhHHHHHHHHhhhc-cccCCCChhH
Q 031315           50 KVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDV-SNCPVGDLLDISQRLKTASEVNAAILTSQ-SHEKDPKLPS  127 (161)
Q Consensus        50 ~~~eAl~yar~~l~~~~~~~~~~~~~l~~~~~LLay~~~-~~sp~~~Ll~~~~r~~la~~vn~aiL~~~-~~~~~~~L~~  127 (161)
                      ++.+||+|||+++++|..+++..+++|+++||||||++| +.+||++++++++|+.||+.||++||..+ |.+.+|.|+.
T Consensus         2 ~~~eAi~yar~~l~~~~~~~~~~~~el~~~m~llaf~~~~~~sp~~~ll~~~~~~~la~~~n~~~l~~~~~~~~~s~L~~   81 (99)
T smart00757        2 KIEEALAYARELLAPFAKEHEKFLKELEKTMALLAYPDPTEPSPYKELLSPSQREKLAEELNSAILELLHGKSSESPLEI   81 (99)
T ss_pred             cHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHhcCCCCCCccHHHHCCHHHHHHHHHHHHHHHHHHccCCCCCChHHH
Confidence            578999999999999998877778999999999999999 89999999999999999999999999998 9999999999


Q ss_pred             HHHHHHHHHhhhhhh
Q 031315          128 LLKMLLWAQNQLDEK  142 (161)
Q Consensus       128 l~k~~~~~~~~l~~~  142 (161)
                      ++++..|+..++.+.
T Consensus        82 ~~~~~~~~~~~l~~~   96 (99)
T smart00757       82 LLSAGLAALKTLLEK   96 (99)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999888654

protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi)

>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.76  E-value=3e-18  Score=143.92  Aligned_cols=133  Identities=22%  Similarity=0.336  Sum_probs=120.1

Q ss_pred             hhhhhhhcCCHHHHHHHhhcCCccccccCcchhhhhhHHHHHHHHHccchH--HHHHHHHHhcCCCCccchHHHHHHHHH
Q 031315            2 AVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVE--EALEFAQEELAPRGEENQSFLEELERT   79 (161)
Q Consensus         2 ~I~~~I~~G~i~~Ai~~i~~~~p~ll~~~~~l~F~L~~q~fIElir~~~~~--eAl~yar~~l~~~~~~~~~~~~~l~~~   79 (161)
                      +|.++|+.||+++|++|+..+.-.|.+.++.|+|+|+.++|+++++.|.-.  +||.|||++++||+..   +..+||++
T Consensus       161 ~Iv~~lke~Dl~~aLeWa~~~~~~L~~~~s~LE~~Lh~l~fl~l~~~g~~~~~eAl~Yar~~~~~F~~~---~~~eIQkl  237 (394)
T KOG2817|consen  161 QIVEALKERDLEPALEWAESNRQKLKEKSSSLEFKLHSLHFLSLIRGGKSDQREALRYARTHFAPFVAD---HLREIQKL  237 (394)
T ss_pred             HHHHHHHhccchhHHHHHHHhhhhhccccccHHHHHHHHHHHHHHhcCCcCcHHHHHHHHHhcCccccc---hHHHHHHH
Confidence            689999999999999999999999999999999999999999999998655  9999999999999854   58999999


Q ss_pred             hHHHhccc--cCCCcchhhhhHHHHhhhHHHHHHHHhhhccccCCCCh-----------hHHHHHHHHHHh
Q 031315           80 VALLAFED--VSNCPVGDLLDISQRLKTASEVNAAILTSQSHEKDPKL-----------PSLLKMLLWAQN  137 (161)
Q Consensus        80 ~~LLay~~--~~~sp~~~Ll~~~~r~~la~~vn~aiL~~~~~~~~~~L-----------~~l~k~~~~~~~  137 (161)
                      |++|.|-.  .+.|||.+++++..|..+...|-+.-+...|.+.+|+|           +.++++......
T Consensus       238 m~sl~~l~~gl~~spy~~~ls~~~w~~~~~~f~r~ycallg~s~eSPL~v~v~aG~~Alp~Llk~~~v~~~  308 (394)
T KOG2817|consen  238 MGSLLYLRNGLEKSPYSEILSPKLWKELTEEFTREYCALLGISVESPLSVLVNAGCIALPQLLKYKSVMEL  308 (394)
T ss_pred             HHHHHHHHcCCCCCChHHHhCHHHHHHHHHHHHHHHHHHcCCCccCcHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            99999984  47999999999999999999999999999999999855           456666655544

>smart00668 CTLH C-terminal to LisH motif

Probab=99.39  E-value=2.9e-13  Score=85.44  Aligned_cols=50  Identities=32%  Similarity=0.689  Sum_probs=48.0

Q ss_pred             hhhhhhhcCCHHHHHHHhhcCCccccccCcchhhhhhHHHHHHHHHccch
Q 031315            2 AVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKV   51 (161)
Q Consensus         2 ~I~~~I~~G~i~~Ai~~i~~~~p~ll~~~~~l~F~L~~q~fIElir~~~~   51 (161)
                      .|+++|+.|++++|++|+++++|.+.+.++.+.|.|++|+||||++.|+.
T Consensus         7 ~i~~~i~~g~~~~a~~~~~~~~~~l~~~~~~l~f~L~~q~~lell~~~~~   56 (58)
T smart00668        7 RIRELILKGDWDEALEWLSSLKPPLLERNSKLEFELRKQKFLELVRQGKL   56 (58)
T ss_pred             HHHHHHHcCCHHHHHHHHHHcCHHHhccCCCchhHHHHHHHHHHHHcCCc
Confidence            68999999999999999999999999999999999999999999998864

Alpha-helical motif of unknown function.

>KOG1477 consensus SPRY domain-containing proteins [General function prediction only]

Probab=98.74  E-value=4e-09  Score=92.26  Aligned_cols=112  Identities=29%  Similarity=0.266  Sum_probs=102.6

Q ss_pred             cCcchhhhhhHHHHHHHHHccchHHHHHHHHHhcCCCCc--cchHHHHHHHHHhHHHhccccCCCcchhhhhHHHHhhhH
Q 031315           29 TNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGE--ENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTA  106 (161)
Q Consensus        29 ~~~~l~F~L~~q~fIElir~~~~~eAl~yar~~l~~~~~--~~~~~~~~l~~~~~LLay~~~~~sp~~~Ll~~~~r~~la  106 (161)
                      ..+...+.+.|+.+|.+.|-+.+...+++-+..+++...  .+.....+++++++||+|.+|+.||...++++.+|+-++
T Consensus       338 ~~~~~~~~~~~~~~v~~~~~g~v~~e~~~~k~~l~~~~g~~~~~~~~~~~~~s~~Llays~p~~s~~g~~~~~~~~e~v~  417 (469)
T KOG1477|consen  338 DYPQRGAKDPCGLHVNLGRAGFVFIEANAKKWELAKDYGIKKNSAAVGMLSDSSSLLAYSDPEESPVGYLLDPIQREPVA  417 (469)
T ss_pred             cccchhhccchhhhhhHHHHHHHHHHHHHHHHhhhhhhCcCccccccccccchHHHHHhcCcccCccccccCcccchhHH
Confidence            358899999999999999999999999999999998765  455678899999999999999999999999999999999


Q ss_pred             HHHHHHHhhhccccCCCChhHHHHHHHHHHhhhh
Q 031315          107 SEVNAAILTSQSHEKDPKLPSLLKMLLWAQNQLD  140 (161)
Q Consensus       107 ~~vn~aiL~~~~~~~~~~L~~l~k~~~~~~~~l~  140 (161)
                      +.+|.+||...+.++++.|+.++.+...+...+.
T Consensus       418 ~~~n~~il~t~~~~~~~~l~~~l~~~~~~~~~~~  451 (469)
T KOG1477|consen  418 EALNSAILETDNNSKDPDLERVLSQTPAELSLYA  451 (469)
T ss_pred             hhhcccccccCCCCccchhhhhhccchhhHhhhh
Confidence            9999999999999999999999999988876654

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=94.32  E-value=0.32  Score=42.44  Aligned_cols=126  Identities=14%  Similarity=0.156  Sum_probs=83.1

Q ss_pred             hhhhhcCCHHHHHHHhhcC-CccccccCcchhhhhhHHHHHHHHHccchHHHHHHHHHhcCCCCccchHHHHHHHHHhHH
Q 031315            4 KKAVQCGNVEDAIEKVNDL-NPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVAL   82 (161)
Q Consensus         4 ~~~I~~G~i~~Ai~~i~~~-~p~ll~~~~~l~F~L~~q~fIElir~~~~~eAl~yar~~l~~~~~~~~~~~~~l~~~~~L   82 (161)
                      .+.++.|+.+.++.-.... +|. ...-....|.+..|.|+|+.+.|++..|+..-|..+.+.-    .-.+.+.++.+-
T Consensus        57 ~q~vlqg~w~q~v~~~~~i~~~d-e~~~~ea~fLv~kQ~fLEf~k~~~is~al~~l~~~~~~lr----~~~kk~~el~~s  131 (519)
T KOG0293|consen   57 DQQVLQGQWDQQVMSLVRISFED-ERNRKEAMFLVNKQIFLEFLKTGSISHALPVLRNPVLYLR----KNKKKFHELASS  131 (519)
T ss_pred             HHHHHcccHHHHHHHHhhccCcc-hhhhHHHHHHHHHHHHHHHHhhccHhhhhHhhhcchhhhh----hhHHHHHHHHHH
Confidence            5788999998887766555 666 4444688999999999999999999999998886555542    235667788888


Q ss_pred             HhccccCCC-c--chhhhhHHHHhhhHHHHHHHHhhhccccCCCChhHHHHHHHHHH
Q 031315           83 LAFEDVSNC-P--VGDLLDISQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLLWAQ  136 (161)
Q Consensus        83 Lay~~~~~s-p--~~~Ll~~~~r~~la~~vn~aiL~~~~~~~~~~L~~l~k~~~~~~  136 (161)
                      |.+++...+ .  -...+..+ |..|-+++..-|=-. -+-++-.|+.|++++.--|
T Consensus       132 ll~sn~~~~ne~~~~~~~~n~-R~~ll~elskyi~p~-illP~rRLehLl~qAv~~Q  186 (519)
T KOG0293|consen  132 LLVSNDQFSNEENTTAQLNNE-RDKLLDELSKYIPPN-ILLPKRRLEHLLEQAVKYQ  186 (519)
T ss_pred             Hhccccccccccchhhhhchh-HHHHHHHHHhhCCHh-hcCChHHHHHHHHHHHHHH
Confidence            888853221 1  22333333 455555544322111 1123448889999887554

>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=92.90  E-value=0.74  Score=38.84  Aligned_cols=122  Identities=14%  Similarity=0.142  Sum_probs=83.4

Q ss_pred             hhhhhhcCCHHHHHHHhhcCCccccccCcchhh--hhhHHHHHHHHHccchHHHHHHHHHhcCCCCccchHHHHHHHHHh
Q 031315            3 VKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFF--HLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTV   80 (161)
Q Consensus         3 I~~~I~~G~i~~Ai~~i~~~~p~ll~~~~~l~F--~L~~q~fIElir~~~~~eAl~yar~~l~~~~~~~~~~~~~l~~~~   80 (161)
                      |.+.|.+.+...-|+|.+ ...-+-..++.+++  .+....+.-++-. ++++|+.|-++.++.|.   +.|...++..|
T Consensus       145 v~~gI~~k~~~l~iE~~Q-i~gyl~kgdtesel~l~~~~~esl~l~hk-~~~~a~r~c~t~~a~f~---~kh~~dv~~~~  219 (396)
T COG5109         145 VISGISEKSTFLLIEFLQ-IEGYLSKGDTESELELYLVSHESLLLIHK-RYDEALRLCFTKLASFV---PKHIQDVKPLL  219 (396)
T ss_pred             HHHhhccchhHhHHHHHH-hcCccccCCchhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH---HHhccchHHHH
Confidence            455677888888899983 33333344444444  4445555555544 79999999999999987   56778888888


Q ss_pred             HHHhccccC--CC-------cchhhhh--------------HHHHhhhHHHHHHHHhhhccccCCCChhHHH
Q 031315           81 ALLAFEDVS--NC-------PVGDLLD--------------ISQRLKTASEVNAAILTSQSHEKDPKLPSLL  129 (161)
Q Consensus        81 ~LLay~~~~--~s-------p~~~Ll~--------------~~~r~~la~~vn~aiL~~~~~~~~~~L~~l~  129 (161)
                      -.+.+....  -+       ...+++.              ...|..+-..|-+..|...|++-+|.|.-++
T Consensus       220 ~~l~nap~dcfrhrekelmqnI~~~l~ksligqPiEdIDkvnk~~k~l~~lF~~eycaa~gm~~~spL~~~v  291 (396)
T COG5109         220 RFLVNAPTDCFRHREKELMQNIQEALKKSLIGQPIEDIDKVNKSRKKLIELFKSEYCAANGMPNRSPLRELV  291 (396)
T ss_pred             HHHHcCchHHhhhcchhHHHHHHHHHHHhhcCCcHHHHHHhhhhHHHHHHHHHHHHHHhcCCCccChHHHHH
Confidence            888774221  01       1222222              1458899999999999999999999887554

>cd08044 TAF5_NTD2 TAF5_NTD2 is the second conserved N-terminal region of TATA Binding Protein (TBP) Associated Factor 5 (TAF5), involved in forming Transcription Factor IID (TFIID)

Probab=84.20  E-value=1.1  Score=32.72  Aligned_cols=111  Identities=14%  Similarity=0.214  Sum_probs=69.2

Q ss_pred             HHHhhcCCccccccC-cchhhhhhHHHHHHHHHccchHHHHHHHHHhcCCCCccchHHHHHHHHHhHHHhccccCCCcch
Q 031315           16 IEKVNDLNPEILDTN-PQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVG   94 (161)
Q Consensus        16 i~~i~~~~p~ll~~~-~~l~F~L~~q~fIElir~~~~~eAl~yar~~l~~~~~~~~~~~~~l~~~~~LLay~~~~~sp~~   94 (161)
                      -+|+.+. +++.+.. ..+.|=+-+-=|++||.+|...+|..|-.+.-..+.   +.|.+.|+...++.--.+..+.+..
T Consensus        12 ~~wv~~~-ld~~k~EL~~lLyPiFvh~yL~lv~~~~~~~A~~F~~~f~~~~~---~~~~~~i~~L~~i~~p~~l~~n~~~   87 (133)
T cd08044          12 RKWIESS-LDIYKYELSQLLYPIFVHSYLDLVASGHLEEAKSFFERFSGDFE---DSHSEDIKKLSSITTPEHLKENELA   87 (133)
T ss_pred             HHHHHhC-cHhhHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhHhhH---HHHHHHHHHHHccCCHHHHhhhHHH
Confidence            3455544 3333221 468888899999999999999999999887655553   4677788887666555555555544


Q ss_pred             hhh-hHHHHhhhHHHHHHHHhhhccccCCCChhHHHH
Q 031315           95 DLL-DISQRLKTASEVNAAILTSQSHEKDPKLPSLLK  130 (161)
Q Consensus        95 ~Ll-~~~~r~~la~~vn~aiL~~~~~~~~~~L~~l~k  130 (161)
                      ..+ +.+-+-.+....-..++.++.....+.+..+++
T Consensus        88 ~~~r~~Ky~i~ms~~s~~lL~~~L~~~~~~~~~~il~  124 (133)
T cd08044          88 KLFRSNKYVIRMSRDAYSLLLRFLESWGGSLLLKILN  124 (133)
T ss_pred             HHHHhCCEEEEECHHHHHHHHHHHHHCCcHHHHHHHH
Confidence            433 445555666666555655554333334444443

The TATA Binding Protein (TBP) Associated Factor 5 (TAF5) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TAF5 contains three domains, two conserved sequence motifs at the N-terminal and one at the C-terminal region. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the preinitiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. In yeast and human cells, TAFs have been found as components of other complexes besides TFIID. TAF5 may play a major role in forming TFIID and its related complexes. TAFs from various

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	161
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-06

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.7 bits (102), Expect = 8e-06
 Identities = 34/160 (21%), Positives = 56/160 (35%), Gaps = 53/160 (33%)

Query: 18  KVNDLNPEILDTNPQLFFHLQQQRLI-ELIRNG-------------KVEEALEFAQEELA 63
           +  DL  E+L TNP     L    +I E IR+G             K+   +E +   L 
Sbjct: 314 RPQDLPREVLTTNP---RRLS---IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE 367

Query: 64  PRGEENQSFLEEL----------ERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAI 113
           P   E +   + L             ++L+ F+ + +      + +  +L   S V    
Sbjct: 368 P--AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV----MVVVNKLHKYSLV---- 417

Query: 114 LTSQSHEKDPK-----LPSLLKMLLWAQNQLDEKAAYPRI 148
                 EK PK     +PS+   L       +E A +  I
Sbjct: 418 ------EKQPKESTISIPSIY--LELKVKLENEYALHRSI 449

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	161
2nxp_A	156	Transcription initiation factor TFIID subunit 5; t	90.29

>2nxp_A Transcription initiation factor TFIID subunit 5; transcription factor, TAF5; 2.17A {Homo sapiens} SCOP: d.379.1.1

Probab=90.29  E-value=0.56  Score=34.24  Aligned_cols=110  Identities=13%  Similarity=0.103  Sum_probs=75.1

Q ss_pred             HHHhhcCCcccccc-CcchhhhhhHHHHHHHHHccchHHHHHHHHHhcCCCCccchHHHHHHHHHhHHHhccccCCCcch
Q 031315           16 IEKVNDLNPEILDT-NPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVG   94 (161)
Q Consensus        16 i~~i~~~~p~ll~~-~~~l~F~L~~q~fIElir~~~~~eAl~yar~~l~~~~~~~~~~~~~l~~~~~LLay~~~~~sp~~   94 (161)
                      .+|+... +++.+. =..+.|=+-+.=|++||.+|...+|-.|-.++-..+.   +.+.+.++++.++.--....+.++.
T Consensus        35 ~~wv~~s-ld~yk~EL~~lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~---~~~~~~i~~L~~i~~~~~l~~n~~~  110 (156)
T 2nxp_A           35 KHFIECS-LDCHRAELSQLFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQE---CYYQDDLRVLSSLTKKEHMKGNETM  110 (156)
T ss_dssp             HHHHHTS-CHHHHHHHGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSC---GGGHHHHHHHHTCCSHHHHTTCGGG
T ss_pred             HHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhHHhH---HHHHHHHHHHhcCCCHHHHhhcHHH
Confidence            5666664 333322 2678999999999999999999999999987766664   4577788888777666666666666


Q ss_pred             hhh-hHHHHhhhHHHHHHHHhhhccccCCCChhHHH
Q 031315           95 DLL-DISQRLKTASEVNAAILTSQSHEKDPKLPSLL  129 (161)
Q Consensus        95 ~Ll-~~~~r~~la~~vn~aiL~~~~~~~~~~L~~l~  129 (161)
                      ..+ +...+-.+.......++.+......+.+-.++
T Consensus       111 ~~fr~~Ky~I~ls~~s~~lL~~fL~~~~~~~ll~Ii  146 (156)
T 2nxp_A          111 LDFRTSKFVLRISRDSYQLLKRHLQEKQNNQIWNIV  146 (156)
T ss_dssp             GGGCGGGSEEEEEHHHHHHHHHHHTTSTTCHHHHHH
T ss_pred             HHHHhCCeEEEECHHHHHHHHHHHHHcCChHHHHHH
Confidence            555 44555677777776777765443344444333

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	161
d2nxpa1	149	TAF5 subunit of TFIID {Human (Homo sapiens) [TaxId	91.19
d2j4ba1	131	TAF5 subunit of TFIID {Encephalitozoon cuniculi [T	82.33

>d2nxpa1 d.379.1.1 (A:195-343) TAF5 subunit of TFIID {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Taf5 N-terminal domain-like
superfamily: Taf5 N-terminal domain-like
family: Taf5 N-terminal domain-like
domain: TAF5 subunit of TFIID
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.19  E-value=0.2  Score=34.74  Aligned_cols=110  Identities=13%  Similarity=0.101  Sum_probs=73.8

Q ss_pred             HHHhhcCCccccc-cCcchhhhhhHHHHHHHHHccchHHHHHHHHHhcCCCCccchHHHHHHHHHhHHHhccccCCCcch
Q 031315           16 IEKVNDLNPEILD-TNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVG   94 (161)
Q Consensus        16 i~~i~~~~p~ll~-~~~~l~F~L~~q~fIElir~~~~~eAl~yar~~l~~~~~~~~~~~~~l~~~~~LLay~~~~~sp~~   94 (161)
                      .+|+.+. ++..+ .=..+.|=+-+-=|++||.+|+..+|..|-.+.-..+.   +.+...|+++.++.--.+..+.|..
T Consensus        28 r~wv~~s-ld~yK~EL~~lLyPvFvh~yL~Lv~~~~~~~A~~F~~kf~~~~~---~~~~~~I~~L~~i~~~~~l~~n~~~  103 (149)
T d2nxpa1          28 KHFIECS-LDCHRAELSQLFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQE---CYYQDDLRVLSSLTKKEHMKGNETM  103 (149)
T ss_dssp             HHHHHTS-CHHHHHHHGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSC---GGGHHHHHHHHTCCSHHHHTTCGGG
T ss_pred             HHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhchhhh---HHHHHHHHHHHcCCCHHHHhhhHHH
Confidence            3455543 33332 22678899999999999999999999999997665553   4577888888877666666666655


Q ss_pred             hhh-hHHHHhhhHHHHHHHHhhhccccCCCChhHHH
Q 031315           95 DLL-DISQRLKTASEVNAAILTSQSHEKDPKLPSLL  129 (161)
Q Consensus        95 ~Ll-~~~~r~~la~~vn~aiL~~~~~~~~~~L~~l~  129 (161)
                      .++ +.+.+-.+....-..++.++.-...+.+-.++
T Consensus       104 ~~~r~nKy~I~ms~~s~~lLl~~L~~~~~~~il~Ii  139 (149)
T d2nxpa1         104 LDFRTSKFVLRISRDSYQLLKRHLQEKQNNQIWNIV  139 (149)
T ss_dssp             GGGCGGGSEEEEEHHHHHHHHHHHTTSTTCHHHHHH
T ss_pred             HHHhCCCeEEEecHHHHHHHHHHHHhCCChHHHHHH
Confidence            444 55656677777776777776533334333333

>d2j4ba1 d.379.1.1 (A:18-148) TAF5 subunit of TFIID {Encephalitozoon cuniculi [TaxId: 6035]}

class: Alpha and beta proteins (a+b)
fold: Taf5 N-terminal domain-like
superfamily: Taf5 N-terminal domain-like
family: Taf5 N-terminal domain-like
domain: TAF5 subunit of TFIID
species: Encephalitozoon cuniculi [TaxId: 6035]

Probab=82.33  E-value=0.18  Score=34.22  Aligned_cols=97  Identities=13%  Similarity=0.154  Sum_probs=59.4

Q ss_pred             HHHhhcCCccccc-cCcchhhhhhHHHHHHHHHccchHHHHHHHHHhcCCCCccchHHHHHHHHHhHHHhccccCCCcch
Q 031315           16 IEKVNDLNPEILD-TNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVG   94 (161)
Q Consensus        16 i~~i~~~~p~ll~-~~~~l~F~L~~q~fIElir~~~~~eAl~yar~~l~~~~~~~~~~~~~l~~~~~LLay~~~~~sp~~   94 (161)
                      -+|+... ++..+ .=..+.|=+-+-=|++||.+|...+|..|-.+.-..+.    .+.++|+++.++.--.+..+.|..
T Consensus        10 r~wv~~s-ld~yK~EL~~lLyPvFvh~yL~Lv~~~~~~~A~~F~~kf~~d~~----~~~~~i~~L~~i~~~~~l~~n~~~   84 (131)
T d2j4ba1          10 KTWIEDS-LDLFKNDLLPLLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDHY----NKSEEIKQFESIYTVQHIHENNFA   84 (131)
T ss_dssp             HHHHHHS-CHHHHHHHGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC------CHHHHHHHTTCCSHHHHHHCHHH
T ss_pred             HHHHHhC-cHhhHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHccchHH----HHHHHHHHHHccCCHHHHhhhHHH
Confidence            3566553 33332 22678898999999999999999999999987655442    356677777775444444444443


Q ss_pred             hhh-hHHHHhhhHHHHHHHHhhhc
Q 031315           95 DLL-DISQRLKTASEVNAAILTSQ  117 (161)
Q Consensus        95 ~Ll-~~~~r~~la~~vn~aiL~~~  117 (161)
                      ..+ +.+.+-.+.+..-..++.++
T Consensus        85 ~~~r~nKy~i~ms~~s~~lL~~fL  108 (131)
T d2j4ba1          85 YTFKNSKYHLSMGRYAFDLLINFL  108 (131)
T ss_dssp             HHHHHSCEEEEEEHHHHHHHHHHH
T ss_pred             HHHhcCceEEEeCHHHHHHHHHHH
Confidence            333 33334455555544555544