Citrus Sinensis ID: 031317

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-
Protein Sequence
MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTRGPKLCNFVEWRGYKVVYKRYASLYFCMCVDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK
Secondary Structure (PSIPRED)
cEEEEEEEEccccEEEEEccccccHHHHHHHHHHHHHHHHccccccccccccccEEEEEEEEccEEEEEEEcccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccEEEEccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccEEEEEEccccccHHHHHcccccHHHHHHHHHHHHHHHHHcccccccEEEccccEEEEEEEEEEEEEEEEccccHHHHHHHHHHHHHHHHHHHHccccEEEEEEcHHHHHHHHHHHHHHcHHHcccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcc
Coil and Loop (DISEMBL)
MIHFVLLISRQgkvrltkwyspytqkERSKVIRELSGViltrgpklcnfvewrgYKVVYKRYASLYFCMCVDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK
Flexible Loop (DISEMBL)
MIHFVLlisrqgkvrltkwyspytqkerskvIRELsgviltrgpklcnfvewrGYKVVYKRYASLYFCMCVDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK
Low Complexity Region (SEG)
MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTRGPKLCNFVEWRGYKVVYKRYASLYFCMCVDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK
Disordered region (IsUnstruct)
*IHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTRGPKLCNFVEWRGYKVVYKRYASLYFCMCVDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGELQ******VARLIA*************************
Disordered Region (DISOPRED)
MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTRGPKLCNFVEWRGYKVVYKRYASLYFCMCVDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGELQESSKKTVARL***************************
Disordered Region (DISEMBL)
MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTRGPKLCNFVEWRGYKVVYKRYASLYFCMCVDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGELQESSKKTVARLIAAQDSL*********SISNIIAQATK
Disordered Region (DISPRO)
MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTRGPKLCNFVEWRGYKVVYKRYASLYFCMCVDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGELQESSKKTVARLIAAQDSLVETA****************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTRGPKLCNFVEWRGYKVVYKRYASLYFCMCVDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	161	2.2.26 [Sep-21-2011]
O23685	162	AP-1 complex subunit sigm	yes	no	1.0	0.993	0.925	8e-86
Q8LEZ8	161	AP-1 complex subunit sigm	yes	no	1.0	1.0	0.919	1e-85
B0G185	154	AP-1 complex subunit sigm	yes	no	0.894	0.935	0.708	5e-61
Q9DB50	160	AP-1 complex subunit sigm	yes	no	0.944	0.95	0.605	2e-51
Q3ZBS3	160	AP-1 complex subunit sigm	yes	no	0.944	0.95	0.605	2e-51
P56377	157	AP-1 complex subunit sigm	yes	no	0.956	0.980	0.590	1e-50
Q9P7N2	162	AP-1 complex subunit sigm	yes	no	0.987	0.981	0.562	4e-50
P61967	158	AP-1 complex subunit sigm	no	no	0.962	0.981	0.574	2e-49
P61966	158	AP-1 complex subunit sigm	no	no	0.962	0.981	0.574	2e-49
Q1JQ98	157	AP-1 complex subunit sigm	no	no	0.956	0.980	0.571	1e-48

>sp|O23685|AP1S2_ARATH AP-1 complex subunit sigma-2 OS=Arabidopsis thaliana GN=AAP19-2 PE=2 SV=1

 Score =  315 bits (807), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 149/161 (92%), Positives = 156/161 (96%)

Query: 1   MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTRGPKLCNFVEWRGYKVVYK 60
           MIHFVLL+SRQGKVRLTKWYSPY QKERSKVIRELSGVIL RGPKLCNFVEWRGYKVVYK
Sbjct: 1   MIHFVLLVSRQGKVRLTKWYSPYAQKERSKVIRELSGVILNRGPKLCNFVEWRGYKVVYK 60

Query: 61  RYASLYFCMCVDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIA 120
           RYASLYFCMC+DQEDNELE+LEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDE+LIA
Sbjct: 61  RYASLYFCMCIDQEDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120

Query: 121 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 161
           GELQESSKKTVAR+I+AQD LVE AKE+ASSISNIIAQAT 
Sbjct: 121 GELQESSKKTVARIISAQDQLVEVAKEEASSISNIIAQATN 161

Subunit of clathrin-associated adaptor protein complex 1 that plays a role in protein sorting in the trans-Golgi network (TGN) and endosomes. The AP complexes mediate the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8LEZ8|AP1S1_ARATH AP-1 complex subunit sigma-1 OS=Arabidopsis thaliana GN=AAP19-1 PE=2 SV=1

 Score =  315 bits (806), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 148/161 (91%), Positives = 157/161 (97%)

Query: 1   MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTRGPKLCNFVEWRGYKVVYK 60
           MIHFVLL+SRQGKVRLTKWYSPYTQKERSKVIRELSGVIL RGPKLCNF+EWRGYKVVYK
Sbjct: 1   MIHFVLLVSRQGKVRLTKWYSPYTQKERSKVIRELSGVILNRGPKLCNFIEWRGYKVVYK 60

Query: 61  RYASLYFCMCVDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIA 120
           RYASLYFCMC+D+ DNELE+LEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDE+LIA
Sbjct: 61  RYASLYFCMCIDEADNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120

Query: 121 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 161
           GELQESSKKTVAR+I+AQD LVE AKE+ASSISNIIAQATK
Sbjct: 121 GELQESSKKTVARIISAQDQLVEVAKEEASSISNIIAQATK 161

Subunit of clathrin-associated adaptor protein complex 1 that plays a role in protein sorting in the trans-Golgi network (TGN) and endosomes. The AP complexes mediate the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules.

Arabidopsis thaliana (taxid: 3702)

>sp|B0G185|AP1S2_DICDI AP-1 complex subunit sigma-2 OS=Dictyostelium discoideum GN=ap1s2 PE=3 SV=1

 Score =  233 bits (593), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 102/144 (70%), Positives = 127/144 (88%)

Query: 2   IHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTRGPKLCNFVEWRGYKVVYKR 61
            HF+LL+SRQGK RLTKWYSP+T KE+S+  RE+  ++L R PKLCNF+EW+ YK+++KR
Sbjct: 3   FHFLLLLSRQGKTRLTKWYSPFTNKEKSRFTREIGNMVLNRPPKLCNFLEWKEYKIIFKR 62

Query: 62  YASLYFCMCVDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIAG 121
           YASLYF +C D+EDNEL +LEIIHH+VEILDRYFG+VCELDLIFNFHKAYYILDE+++AG
Sbjct: 63  YASLYFVVCCDREDNELIVLEIIHHFVEILDRYFGNVCELDLIFNFHKAYYILDELIMAG 122

Query: 122 ELQESSKKTVARLIAAQDSLVETA 145
           ELQE+SKKTV RLI+ QD+L+E  
Sbjct: 123 ELQETSKKTVLRLISQQDTLLEGG 146

Subunit of clathrin-associated adaptor protein complex 1 that plays a role in protein sorting in the trans-Golgi network (TGN) and endosomes. The AP complexes mediate the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules. Also involved in early steps of phagocytosis and macropinocytosis.

Dictyostelium discoideum (taxid: 44689)

>sp|Q9DB50|AP1S2_MOUSE AP-1 complex subunit sigma-2 OS=Mus musculus GN=Ap1s2 PE=2 SV=1

 Score =  201 bits (510), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 92/152 (60%), Positives = 115/152 (75%)

Query: 2   IHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTRGPKLCNFVEWRGYKVVYKR 61
           + F+LL SRQGK+RL KWY P + KE+ K+ REL   +L R PK+C+F+EWR  K+VYKR
Sbjct: 1   MQFMLLFSRQGKLRLQKWYVPLSDKEKKKITRELVQTVLARKPKMCSFLEWRDLKIVYKR 60

Query: 62  YASLYFCMCVDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIAG 121
           YASLYFC  ++ +DNEL  LEIIH YVE+LD+YFGSVCELD+IFNF KAY+ILDE L+ G
Sbjct: 61  YASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLGG 120

Query: 122 ELQESSKKTVARLIAAQDSLVETAKEQASSIS 153
           E+QE+SKK V + I   D L E AKE  +  S
Sbjct: 121 EVQETSKKNVLKAIEQADLLQEDAKEAETPRS 152

Subunit of clathrin-associated adaptor protein complex 1 that plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The AP complexes mediate both the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules.

Mus musculus (taxid: 10090)

>sp|Q3ZBS3|AP1S2_BOVIN AP-1 complex subunit sigma-2 OS=Bos taurus GN=AP1S2 PE=2 SV=1

 Score =  201 bits (510), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 92/152 (60%), Positives = 115/152 (75%)

Query: 2   IHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTRGPKLCNFVEWRGYKVVYKR 61
           + F+LL SRQGK+RL KWY P + KE+ K+ REL   +L R PK+C+F+EWR  K+VYKR
Sbjct: 1   MQFMLLFSRQGKLRLQKWYVPLSDKEKKKITRELVQTVLARKPKMCSFLEWRDLKIVYKR 60

Query: 62  YASLYFCMCVDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIAG 121
           YASLYFC  ++ +DNEL  LEIIH YVE+LD+YFGSVCELD+IFNF KAY+ILDE L+ G
Sbjct: 61  YASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLGG 120

Query: 122 ELQESSKKTVARLIAAQDSLVETAKEQASSIS 153
           E+QE+SKK V + I   D L E AKE  +  S
Sbjct: 121 EVQETSKKNVLKAIEQADLLQEDAKEAETPRS 152

Subunit of clathrin-associated adaptor protein complex 1 that plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The AP complexes mediate both the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules.

Bos taurus (taxid: 9913)

>sp|P56377|AP1S2_HUMAN AP-1 complex subunit sigma-2 OS=Homo sapiens GN=AP1S2 PE=1 SV=1

 Score =  198 bits (504), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 91/154 (59%), Positives = 115/154 (74%)

Query: 2   IHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTRGPKLCNFVEWRGYKVVYKR 61
           + F+LL SRQGK+RL KWY P + KE+ K+ REL   +L R PK+C+F+EWR  K+VYKR
Sbjct: 1   MQFMLLFSRQGKLRLQKWYVPLSDKEKKKITRELVQTVLARKPKMCSFLEWRDLKIVYKR 60

Query: 62  YASLYFCMCVDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIAG 121
           YASLYFC  ++ +DNEL  LEIIH YVE+LD+YFGSVCELD+IFNF KAY+ILDE L+ G
Sbjct: 61  YASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLGG 120

Query: 122 ELQESSKKTVARLIAAQDSLVETAKEQASSISNI 155
           E+QE+SKK V + I   D L E A+   S +  I
Sbjct: 121 EVQETSKKNVLKAIEQADLLQEEAETPRSVLEEI 154

Subunit of clathrin-associated adaptor protein complex 1 that plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The AP complexes mediate both the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules.

Homo sapiens (taxid: 9606)

>sp|Q9P7N2|AP1S1_SCHPO AP-1 complex subunit sigma-1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vas2 PE=1 SV=1

 Score =  196 bits (499), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 90/160 (56%), Positives = 124/160 (77%), Gaps = 1/160 (0%)

Query: 2   IHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTRGPKLCNFVEWRGYKVVYKR 61
           I F LL+SRQGKVRL KW++  + KER+K+IR++S +++TR PK+CNFVE++G K+VY+R
Sbjct: 3   IKFFLLVSRQGKVRLAKWFNTLSIKERAKIIRDVSSLVITRKPKMCNFVEYKGEKIVYRR 62

Query: 62  YASLYFCMCVDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIAG 121
           YASL+F   ++Q+DNEL ILE+IH +VE LD+YFG+VCELDLIFNF KAYY+++E+L+AG
Sbjct: 63  YASLFFVCGIEQDDNELIILEVIHKFVECLDKYFGNVCELDLIFNFEKAYYVMEELLLAG 122

Query: 122 ELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 161
           ELQESSK  V   + A D+  E A  Q  S+  ++    K
Sbjct: 123 ELQESSKTNVLSAVLAGDAESE-ADAQQDSLQKLVGSVKK 161

Component of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P61967|AP1S1_MOUSE AP-1 complex subunit sigma-1A OS=Mus musculus GN=Ap1s1 PE=1 SV=1

 Score =  194 bits (493), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 89/155 (57%), Positives = 117/155 (75%)

Query: 1   MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTRGPKLCNFVEWRGYKVVYK 60
           M+ F+LL SRQGK+RL KWY   + KER K++REL  V+L R PK+C+F+EWR  KVVYK
Sbjct: 1   MMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYK 60

Query: 61  RYASLYFCMCVDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIA 120
           RYASLYFC  ++ +DNEL  LE+IH YVE+LD+YFGSVCELD+IFNF KAY+ILDE L+ 
Sbjct: 61  RYASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMG 120

Query: 121 GELQESSKKTVARLIAAQDSLVETAKEQASSISNI 155
           G++Q++SKK+V + I   D L E  +   S +  +
Sbjct: 121 GDVQDTSKKSVLKAIEQADLLQEEDESPRSVLEEM 155

Subunit of clathrin-associated adaptor protein complex 1 that plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The AP complexes mediate both the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules.

Mus musculus (taxid: 10090)

>sp|P61966|AP1S1_HUMAN AP-1 complex subunit sigma-1A OS=Homo sapiens GN=AP1S1 PE=1 SV=1

 Score =  194 bits (493), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 89/155 (57%), Positives = 117/155 (75%)

Query: 1   MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTRGPKLCNFVEWRGYKVVYK 60
           M+ F+LL SRQGK+RL KWY   + KER K++REL  V+L R PK+C+F+EWR  KVVYK
Sbjct: 1   MMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYK 60

Query: 61  RYASLYFCMCVDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIA 120
           RYASLYFC  ++ +DNEL  LE+IH YVE+LD+YFGSVCELD+IFNF KAY+ILDE L+ 
Sbjct: 61  RYASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMG 120

Query: 121 GELQESSKKTVARLIAAQDSLVETAKEQASSISNI 155
           G++Q++SKK+V + I   D L E  +   S +  +
Sbjct: 121 GDVQDTSKKSVLKAIEQADLLQEEDESPRSVLEEM 155

Subunit of clathrin-associated adaptor protein complex 1 that plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The AP complexes mediate both the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules.

Homo sapiens (taxid: 9606)

>sp|Q1JQ98|AP1S1_BOVIN AP-1 complex subunit sigma-1A OS=Bos taurus GN=AP1S1 PE=2 SV=1

 Score =  192 bits (487), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 88/154 (57%), Positives = 116/154 (75%)

Query: 2   IHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTRGPKLCNFVEWRGYKVVYKR 61
           + F+LL SRQGK+RL KWY   + KER K++REL  V+L R PK+C+F+EWR  KVVYKR
Sbjct: 1   MRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYKR 60

Query: 62  YASLYFCMCVDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIAG 121
           YASLYFC  ++ +DNEL  LE+IH YVE+LD+YFGSVCELD+IFNF KAY+ILDE L+ G
Sbjct: 61  YASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMGG 120

Query: 122 ELQESSKKTVARLIAAQDSLVETAKEQASSISNI 155
           ++Q++SKK+V + I   D L E  +   S +  +
Sbjct: 121 DVQDTSKKSVLKAIEQADLLQEEDESPRSVLEEM 154

Subunit of clathrin-associated adaptor protein complex 1 that plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The AP complexes mediate both the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	161
302143840	190	unnamed protein product [Vitis vinifera]	1.0	0.847	0.962	2e-87
225464497	161	PREDICTED: AP-1 complex subunit sigma-1	1.0	1.0	0.962	3e-87
297739027	178	unnamed protein product [Vitis vinifera]	1.0	0.904	0.944	2e-86
225425515	161	PREDICTED: AP-1 complex subunit sigma-2-	1.0	1.0	0.944	3e-86
449453636	161	PREDICTED: AP-1 complex subunit sigma-1-	1.0	1.0	0.956	3e-86
255546658	161	clathrin coat assembly protein ap19, put	1.0	1.0	0.950	4e-86
224121234	161	predicted protein [Populus trichocarpa]	1.0	1.0	0.956	8e-86
1762309	161	AP-1 Golgi-related complex component; cl	1.0	1.0	0.937	2e-85
217071666	161	unknown [Medicago truncatula]	1.0	1.0	0.937	8e-85
357495613	161	Clathrin assembly small subunit protein	1.0	1.0	0.931	2e-84

>gi|302143840|emb|CBI22701.3| unnamed protein product [Vitis vinifera]

 Score =  326 bits (835), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 155/161 (96%), Positives = 161/161 (100%)

Query: 1   MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTRGPKLCNFVEWRGYKVVYK 60
           MIHFVLLISRQGKVRLTKWYSPYTQKER+KVIRELSGVILTRGPKLCNFVEWRGYKVVYK
Sbjct: 30  MIHFVLLISRQGKVRLTKWYSPYTQKERTKVIRELSGVILTRGPKLCNFVEWRGYKVVYK 89

Query: 61  RYASLYFCMCVDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIA 120
           RYASLYFCMC+DQ+DNELE+LEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDE+LIA
Sbjct: 90  RYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 149

Query: 121 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 161
           GELQESSKKTVARLIAAQDSLVETAKE+ASSISNIIAQATK
Sbjct: 150 GELQESSKKTVARLIAAQDSLVETAKEEASSISNIIAQATK 190

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225464497|ref|XP_002269251.1| PREDICTED: AP-1 complex subunit sigma-1 [Vitis vinifera] gi|147853756|emb|CAN79566.1| hypothetical protein VITISV_017884 [Vitis vinifera]

 Score =  325 bits (833), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 155/161 (96%), Positives = 161/161 (100%)

Query: 1   MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTRGPKLCNFVEWRGYKVVYK 60
           MIHFVLLISRQGKVRLTKWYSPYTQKER+KVIRELSGVILTRGPKLCNFVEWRGYKVVYK
Sbjct: 1   MIHFVLLISRQGKVRLTKWYSPYTQKERTKVIRELSGVILTRGPKLCNFVEWRGYKVVYK 60

Query: 61  RYASLYFCMCVDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIA 120
           RYASLYFCMC+DQ+DNELE+LEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDE+LIA
Sbjct: 61  RYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120

Query: 121 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 161
           GELQESSKKTVARLIAAQDSLVETAKE+ASSISNIIAQATK
Sbjct: 121 GELQESSKKTVARLIAAQDSLVETAKEEASSISNIIAQATK 161

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297739027|emb|CBI28516.3| unnamed protein product [Vitis vinifera]

 Score =  323 bits (827), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 152/161 (94%), Positives = 161/161 (100%)

Query: 1   MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTRGPKLCNFVEWRGYKVVYK 60
           MIHFVLLISRQGKVRLTKWYSPY+QKER+KVIRELSGVILTRGPKLCNFVEWRGYKVVYK
Sbjct: 18  MIHFVLLISRQGKVRLTKWYSPYSQKERTKVIRELSGVILTRGPKLCNFVEWRGYKVVYK 77

Query: 61  RYASLYFCMCVDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIA 120
           RYASLYFCMC+DQ+DNELE+LEIIHH+VEILDRYFGSVCELDLIFNFHKAYY+LDE+LIA
Sbjct: 78  RYASLYFCMCIDQDDNELEVLEIIHHFVEILDRYFGSVCELDLIFNFHKAYYVLDELLIA 137

Query: 121 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 161
           GELQESSKKTVARLIAAQDSLVETAKE+ASSISNIIAQATK
Sbjct: 138 GELQESSKKTVARLIAAQDSLVETAKEEASSISNIIAQATK 178

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225425515|ref|XP_002263114.1| PREDICTED: AP-1 complex subunit sigma-2-like [Vitis vinifera]

 Score =  322 bits (826), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 152/161 (94%), Positives = 161/161 (100%)

Query: 1   MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTRGPKLCNFVEWRGYKVVYK 60
           MIHFVLLISRQGKVRLTKWYSPY+QKER+KVIRELSGVILTRGPKLCNFVEWRGYKVVYK
Sbjct: 1   MIHFVLLISRQGKVRLTKWYSPYSQKERTKVIRELSGVILTRGPKLCNFVEWRGYKVVYK 60

Query: 61  RYASLYFCMCVDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIA 120
           RYASLYFCMC+DQ+DNELE+LEIIHH+VEILDRYFGSVCELDLIFNFHKAYY+LDE+LIA
Sbjct: 61  RYASLYFCMCIDQDDNELEVLEIIHHFVEILDRYFGSVCELDLIFNFHKAYYVLDELLIA 120

Query: 121 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 161
           GELQESSKKTVARLIAAQDSLVETAKE+ASSISNIIAQATK
Sbjct: 121 GELQESSKKTVARLIAAQDSLVETAKEEASSISNIIAQATK 161

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449453636|ref|XP_004144562.1| PREDICTED: AP-1 complex subunit sigma-1-like [Cucumis sativus] gi|449500122|ref|XP_004161010.1| PREDICTED: AP-1 complex subunit sigma-1-like [Cucumis sativus]

 Score =  322 bits (825), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 154/161 (95%), Positives = 158/161 (98%)

Query: 1   MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTRGPKLCNFVEWRGYKVVYK 60
           MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSG+IL RGPKLCNFVEWRG K VYK
Sbjct: 1   MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 60

Query: 61  RYASLYFCMCVDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIA 120
           RYASLYFCMC+DQEDNELE+LEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDE+LIA
Sbjct: 61  RYASLYFCMCIDQEDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120

Query: 121 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 161
           GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK
Sbjct: 121 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 161

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255546658|ref|XP_002514388.1| clathrin coat assembly protein ap19, putative [Ricinus communis] gi|223546485|gb|EEF47984.1| clathrin coat assembly protein ap19, putative [Ricinus communis]

 Score =  322 bits (824), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 153/161 (95%), Positives = 160/161 (99%)

Query: 1   MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTRGPKLCNFVEWRGYKVVYK 60
           MI FVLLISRQGKVRLTKWYSPY+QKER+KVIRELSGVILTRGPKLCNFVEWRGYKVVYK
Sbjct: 1   MIQFVLLISRQGKVRLTKWYSPYSQKERTKVIRELSGVILTRGPKLCNFVEWRGYKVVYK 60

Query: 61  RYASLYFCMCVDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIA 120
           RYASLYFCMC+DQ+DNELE+LEIIHH+VEILDRYFGSVCELDLIFNFHKAYYILDE+LIA
Sbjct: 61  RYASLYFCMCIDQDDNELEVLEIIHHFVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120

Query: 121 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 161
           GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK
Sbjct: 121 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 161

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224121234|ref|XP_002318532.1| predicted protein [Populus trichocarpa] gi|222859205|gb|EEE96752.1| predicted protein [Populus trichocarpa]

 Score =  321 bits (822), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 154/161 (95%), Positives = 158/161 (98%)

Query: 1   MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTRGPKLCNFVEWRGYKVVYK 60
           MI FVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTRGPKLCNFVEWRG KVVYK
Sbjct: 1   MIQFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTRGPKLCNFVEWRGQKVVYK 60

Query: 61  RYASLYFCMCVDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIA 120
           RYASLYFCMC DQ+DNELE+LEIIHH+VEILDRYFGSVCELDLIFNFHKAYY+LDEILIA
Sbjct: 61  RYASLYFCMCTDQDDNELEVLEIIHHFVEILDRYFGSVCELDLIFNFHKAYYVLDEILIA 120

Query: 121 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 161
           GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK
Sbjct: 121 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 161

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|1762309|gb|AAB39510.1| AP-1 Golgi-related complex component; clathrin coated vesicles; clathrin assembly protein [Camptotheca acuminata]

 Score =  320 bits (819), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 151/161 (93%), Positives = 160/161 (99%)

Query: 1   MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTRGPKLCNFVEWRGYKVVYK 60
           MIHFVLLISRQGKVRLTKWYSP+TQKER+KVIRELSG+ILTRGPKLCNFVEWRG+KVVYK
Sbjct: 1   MIHFVLLISRQGKVRLTKWYSPHTQKERNKVIRELSGLILTRGPKLCNFVEWRGFKVVYK 60

Query: 61  RYASLYFCMCVDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIA 120
           RYASLYFCMC+DQ+DNELE+LEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDE+LIA
Sbjct: 61  RYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120

Query: 121 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 161
           GELQESSKKTVARLIAAQDSLVE AKEQASSISN+IAQATK
Sbjct: 121 GELQESSKKTVARLIAAQDSLVEAAKEQASSISNMIAQATK 161

Source: Camptotheca acuminata

Species: Camptotheca acuminata

Genus: Camptotheca

Family: Cornaceae

Order: Cornales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217071666|gb|ACJ84193.1| unknown [Medicago truncatula]

 Score =  317 bits (813), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 151/161 (93%), Positives = 158/161 (98%)

Query: 1   MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTRGPKLCNFVEWRGYKVVYK 60
           MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTR PKLCNFVEWRG+KVVYK
Sbjct: 1   MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTRAPKLCNFVEWRGHKVVYK 60

Query: 61  RYASLYFCMCVDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIA 120
           RYASLYFCMC+D  DNELE+LE+IHH+VEILDRYFGSVCELDLIFNFHKAYYILDEILIA
Sbjct: 61  RYASLYFCMCIDDADNELEVLEMIHHFVEILDRYFGSVCELDLIFNFHKAYYILDEILIA 120

Query: 121 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 161
           GELQESSKKTVARLIAAQDSLVETAKE+ASS+SNIIAQATK
Sbjct: 121 GELQESSKKTVARLIAAQDSLVETAKEEASSLSNIIAQATK 161

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357495613|ref|XP_003618095.1| Clathrin assembly small subunit protein AP19 [Medicago truncatula] gi|355519430|gb|AET01054.1| Clathrin assembly small subunit protein AP19 [Medicago truncatula] gi|388506324|gb|AFK41228.1| unknown [Medicago truncatula]

 Score =  316 bits (809), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 150/161 (93%), Positives = 158/161 (98%)

Query: 1   MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTRGPKLCNFVEWRGYKVVYK 60
           MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVIL+R PKLCNFVEWRG+KVVYK
Sbjct: 1   MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILSRAPKLCNFVEWRGHKVVYK 60

Query: 61  RYASLYFCMCVDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIA 120
           RYASLYFCMC+D  DNELE+LE+IHH+VEILDRYFGSVCELDLIFNFHKAYYILDEILIA
Sbjct: 61  RYASLYFCMCIDDADNELEVLEMIHHFVEILDRYFGSVCELDLIFNFHKAYYILDEILIA 120

Query: 121 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 161
           GELQESSKKTVARLIAAQDSLVETAKE+ASS+SNIIAQATK
Sbjct: 121 GELQESSKKTVARLIAAQDSLVETAKEEASSLSNIIAQATK 161

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	161
TAIR|locus:2122078	162	AT4G35410 "AT4G35410" [Arabido	0.993	0.987	0.931	3e-78
TAIR|locus:2827550	161	AP19 "associated protein 19" [	1.0	1.0	0.919	3e-78
GENEDB_PFALCIPARUM|PF11_0187	155	PF11_0187 "clathrin assembly p	0.906	0.941	0.739	1.4e-57
UNIPROTKB|Q8III7	155	PF11_0187 "Clathrin assembly p	0.906	0.941	0.739	1.4e-57
DICTYBASE|DDB_G0295711	154	ap1s2 "sigma adaptin" [Dictyos	0.875	0.915	0.723	1.2e-56
FB|FBgn0039132	164	AP-1sigma "Adaptor Protein com	0.925	0.908	0.624	6e-48
UNIPROTKB|Q3ZBS3	160	AP1S2 "AP-1 complex subunit si	0.906	0.912	0.623	7.7e-48
MGI|MGI:1889383	160	Ap1s2 "adaptor-related protein	0.906	0.912	0.623	7.7e-48
RGD|1561862	160	Ap1s2 "adaptor-related protein	0.906	0.912	0.623	7.7e-48
UNIPROTKB|K7GNH2	156	LOC100517795 "Uncharacterized	0.962	0.993	0.587	1.2e-47

TAIR|locus:2122078 AT4G35410 "AT4G35410" [Arabidopsis thaliana (taxid:3702)]

 Score = 787 (282.1 bits), Expect = 3.0e-78, P = 3.0e-78
 Identities = 149/160 (93%), Positives = 156/160 (97%)

Query:     1 MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTRGPKLCNFVEWRGYKVVYK 60
             MIHFVLL+SRQGKVRLTKWYSPY QKERSKVIRELSGVIL RGPKLCNFVEWRGYKVVYK
Sbjct:     1 MIHFVLLVSRQGKVRLTKWYSPYAQKERSKVIRELSGVILNRGPKLCNFVEWRGYKVVYK 60

Query:    61 RYASLYFCMCVDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIA 120
             RYASLYFCMC+DQEDNELE+LEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDE+LIA
Sbjct:    61 RYASLYFCMCIDQEDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120

Query:   121 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQAT 160
             GELQESSKKTVAR+I+AQD LVE AKE+ASSISNIIAQAT
Sbjct:   121 GELQESSKKTVARIISAQDQLVEVAKEEASSISNIIAQAT 160

GO:0005622 "intracellular" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA;ISS

GO:0008565 "protein transporter activity" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030125 "clathrin vesicle coat" evidence=ISS

GO:0030244 "cellulose biosynthetic process" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

TAIR|locus:2827550 AP19 "associated protein 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 787 (282.1 bits), Expect = 3.0e-78, P = 3.0e-78
 Identities = 148/161 (91%), Positives = 157/161 (97%)

Query:     1 MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTRGPKLCNFVEWRGYKVVYK 60
             MIHFVLL+SRQGKVRLTKWYSPYTQKERSKVIRELSGVIL RGPKLCNF+EWRGYKVVYK
Sbjct:     1 MIHFVLLVSRQGKVRLTKWYSPYTQKERSKVIRELSGVILNRGPKLCNFIEWRGYKVVYK 60

Query:    61 RYASLYFCMCVDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIA 120
             RYASLYFCMC+D+ DNELE+LEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDE+LIA
Sbjct:    61 RYASLYFCMCIDEADNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120

Query:   121 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 161
             GELQESSKKTVAR+I+AQD LVE AKE+ASSISNIIAQATK
Sbjct:   121 GELQESSKKTVARIISAQDQLVEVAKEEASSISNIIAQATK 161

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA;ISS

GO:0008565 "protein transporter activity" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030117 "membrane coat" evidence=IEA

GO:0030125 "clathrin vesicle coat" evidence=ISS

GO:0006301 "postreplication repair" evidence=RCA

GENEDB_PFALCIPARUM|PF11_0187 PF11_0187 "clathrin assembly protein AP19, putative" [Plasmodium falciparum (taxid:5833)]

 Score = 592 (213.5 bits), Expect = 1.4e-57, P = 1.4e-57
 Identities = 108/146 (73%), Positives = 127/146 (86%)

Query:     1 MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTRGPKLCNFVEWRGYKVVYK 60
             MIHFVLLISRQGK RL KWY P +QKE++K+IRE S + L R PKLCNFVEWR YK+V+K
Sbjct:     1 MIHFVLLISRQGKTRLAKWYIPLSQKEKAKIIRETSQITLNRTPKLCNFVEWREYKLVFK 60

Query:    61 RYASLYFCMCVDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIA 120
             RYASL+F  C+D+ DNEL  LEIIHHYVEILD+YFG+VCELDLIFNFHKAYY+LDEIL+ 
Sbjct:    61 RYASLFFIACIDKGDNELITLEIIHHYVEILDKYFGNVCELDLIFNFHKAYYLLDEILVT 120

Query:   121 GELQESSKKTVARLIAAQDSLVETAK 146
             GE+QESSKKT+ R++AAQDSL+E  K
Sbjct:   121 GEMQESSKKTILRIVAAQDSLMEDNK 146

GO:0016192 "vesicle-mediated transport" evidence=ISS

GO:0030131 "clathrin adaptor complex" evidence=ISS

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|Q8III7 PF11_0187 "Clathrin assembly protein AP19, putative" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 592 (213.5 bits), Expect = 1.4e-57, P = 1.4e-57
 Identities = 108/146 (73%), Positives = 127/146 (86%)

Query:     1 MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTRGPKLCNFVEWRGYKVVYK 60
             MIHFVLLISRQGK RL KWY P +QKE++K+IRE S + L R PKLCNFVEWR YK+V+K
Sbjct:     1 MIHFVLLISRQGKTRLAKWYIPLSQKEKAKIIRETSQITLNRTPKLCNFVEWREYKLVFK 60

Query:    61 RYASLYFCMCVDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIA 120
             RYASL+F  C+D+ DNEL  LEIIHHYVEILD+YFG+VCELDLIFNFHKAYY+LDEIL+ 
Sbjct:    61 RYASLFFIACIDKGDNELITLEIIHHYVEILDKYFGNVCELDLIFNFHKAYYLLDEILVT 120

Query:   121 GELQESSKKTVARLIAAQDSLVETAK 146
             GE+QESSKKT+ R++AAQDSL+E  K
Sbjct:   121 GEMQESSKKTILRIVAAQDSLMEDNK 146

GO:0003674 "molecular_function" evidence=ND

GO:0016192 "vesicle-mediated transport" evidence=ISS

GO:0030131 "clathrin adaptor complex" evidence=ISS

DICTYBASE|DDB_G0295711 ap1s2 "sigma adaptin" [Dictyostelium discoideum (taxid:44689)]

 Score = 583 (210.3 bits), Expect = 1.2e-56, P = 1.2e-56
 Identities = 102/141 (72%), Positives = 127/141 (90%)

Query:     3 HFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTRGPKLCNFVEWRGYKVVYKRY 62
             HF+LL+SRQGK RLTKWYSP+T KE+S+  RE+  ++L R PKLCNF+EW+ YK+++KRY
Sbjct:     4 HFLLLLSRQGKTRLTKWYSPFTNKEKSRFTREIGNMVLNRPPKLCNFLEWKEYKIIFKRY 63

Query:    63 ASLYFCMCVDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGE 122
             ASLYF +C D+EDNEL +LEIIHH+VEILDRYFG+VCELDLIFNFHKAYYILDE+++AGE
Sbjct:    64 ASLYFVVCCDREDNELIVLEIIHHFVEILDRYFGNVCELDLIFNFHKAYYILDELIMAGE 123

Query:   123 LQESSKKTVARLIAAQDSLVE 143
             LQE+SKKTV RLI+ QD+L+E
Sbjct:   124 LQETSKKTVLRLISQQDTLLE 144

GO:0015031 "protein transport" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006897 "endocytosis" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0030665 "clathrin-coated vesicle membrane" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

FB|FBgn0039132 AP-1sigma "Adaptor Protein complex 1, sigma subunit" [Drosophila melanogaster (taxid:7227)]

 Score = 501 (181.4 bits), Expect = 6.0e-48, P = 6.0e-48
 Identities = 93/149 (62%), Positives = 115/149 (77%)

Query:     1 MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTRGPKLCNFVEWRGYKVVYK 60
             M+ F+LL SRQGK+RL KWY  Y  K + K+ REL   IL R PK+C+F+EW+  K+VYK
Sbjct:     1 MMLFMLLFSRQGKLRLQKWYMAYPDKVKKKITRELVTTILARKPKMCSFLEWKDCKIVYK 60

Query:    61 RYASLYFCMCVDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIA 120
             RYASLYFC  ++Q DNEL  LEIIH YVE+LD+YFGSVCELD+IFNF KAY+ILDE+LI 
Sbjct:    61 RYASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELLIG 120

Query:   121 GELQESSKKTVARLIAAQDSLVETAKEQA 149
             GE+QE+SKK V + IA+QD L E    Q+
Sbjct:   121 GEIQETSKKNVLKAIASQDLLQEDETPQS 149

GO:0016183 "synaptic vesicle coating" evidence=TAS

GO:0006901 "vesicle coating" evidence=TAS

GO:0008021 "synaptic vesicle" evidence=TAS

GO:0030135 "coated vesicle" evidence=TAS

GO:0007269 "neurotransmitter secretion" evidence=NAS

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030117 "membrane coat" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0048749 "compound eye development" evidence=IMP

GO:0042051 "compound eye photoreceptor development" evidence=IMP

GO:0046907 "intracellular transport" evidence=IMP

GO:0008565 "protein transporter activity" evidence=IMP

GO:0007411 "axon guidance" evidence=IMP

GO:0035976 "AP1 complex" evidence=IMP

UNIPROTKB|Q3ZBS3 AP1S2 "AP-1 complex subunit sigma-2" [Bos taurus (taxid:9913)]

 Score = 500 (181.1 bits), Expect = 7.7e-48, P = 7.7e-48
 Identities = 91/146 (62%), Positives = 113/146 (77%)

Query:     2 IHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTRGPKLCNFVEWRGYKVVYKR 61
             + F+LL SRQGK+RL KWY P + KE+ K+ REL   +L R PK+C+F+EWR  K+VYKR
Sbjct:     1 MQFMLLFSRQGKLRLQKWYVPLSDKEKKKITRELVQTVLARKPKMCSFLEWRDLKIVYKR 60

Query:    62 YASLYFCMCVDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIAG 121
             YASLYFC  ++ +DNEL  LEIIH YVE+LD+YFGSVCELD+IFNF KAY+ILDE L+ G
Sbjct:    61 YASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLGG 120

Query:   122 ELQESSKKTVARLIAAQDSLVETAKE 147
             E+QE+SKK V + I   D L E AKE
Sbjct:   121 EVQETSKKNVLKAIEQADLLQEDAKE 146

GO:0030659 "cytoplasmic vesicle membrane" evidence=IEA

GO:0005905 "coated pit" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0006897 "endocytosis" evidence=IEA

GO:0030117 "membrane coat" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

MGI|MGI:1889383 Ap1s2 "adaptor-related protein complex 1, sigma 2 subunit" [Mus musculus (taxid:10090)]

 Score = 500 (181.1 bits), Expect = 7.7e-48, P = 7.7e-48
 Identities = 91/146 (62%), Positives = 113/146 (77%)

Query:     2 IHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTRGPKLCNFVEWRGYKVVYKR 61
             + F+LL SRQGK+RL KWY P + KE+ K+ REL   +L R PK+C+F+EWR  K+VYKR
Sbjct:     1 MQFMLLFSRQGKLRLQKWYVPLSDKEKKKITRELVQTVLARKPKMCSFLEWRDLKIVYKR 60

Query:    62 YASLYFCMCVDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIAG 121
             YASLYFC  ++ +DNEL  LEIIH YVE+LD+YFGSVCELD+IFNF KAY+ILDE L+ G
Sbjct:    61 YASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLGG 120

Query:   122 ELQESSKKTVARLIAAQDSLVETAKE 147
             E+QE+SKK V + I   D L E AKE
Sbjct:   121 EVQETSKKNVLKAIEQADLLQEDAKE 146

GO:0003674 "molecular_function" evidence=ND

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005905 "coated pit" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006897 "endocytosis" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030117 "membrane coat" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

RGD|1561862 Ap1s2 "adaptor-related protein complex 1, sigma 2 subunit" [Rattus norvegicus (taxid:10116)]

 Score = 500 (181.1 bits), Expect = 7.7e-48, P = 7.7e-48
 Identities = 91/146 (62%), Positives = 113/146 (77%)

Query:     2 IHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTRGPKLCNFVEWRGYKVVYKR 61
             + F+LL SRQGK+RL KWY P + KE+ K+ REL   +L R PK+C+F+EWR  K+VYKR
Sbjct:     1 MQFMLLFSRQGKLRLQKWYVPLSDKEKKKITRELVQTVLARKPKMCSFLEWRDLKIVYKR 60

Query:    62 YASLYFCMCVDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIAG 121
             YASLYFC  ++ +DNEL  LEIIH YVE+LD+YFGSVCELD+IFNF KAY+ILDE L+ G
Sbjct:    61 YASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLGG 120

Query:   122 ELQESSKKTVARLIAAQDSLVETAKE 147
             E+QE+SKK V + I   D L E AKE
Sbjct:   121 EVQETSKKNVLKAIEQADLLQEDAKE 146

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0008565 "protein transporter activity" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030117 "membrane coat" evidence=IEA

UNIPROTKB|K7GNH2 LOC100517795 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 498 (180.4 bits), Expect = 1.2e-47, P = 1.2e-47
 Identities = 91/155 (58%), Positives = 116/155 (74%)

Query:     2 IHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTRGPKLCNFVEWRGYKVVYKR 61
             + F+LL SRQGK+RL KWY P + KE+ K+ REL   +L R PK+C+F+EWR  K+VYKR
Sbjct:     1 MQFMLLFSRQGKLRLQKWYVPLSDKEKKKITRELVQTVLARKPKMCSFLEWRDLKIVYKR 60

Query:    62 YASLYFCMCVDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIAG 121
             YASLYFC  ++ +DNEL  LEIIH YVE+LD+YFGSVCELD+IFNF KAY+ILDE L+ G
Sbjct:    61 YASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLGG 120

Query:   122 ELQESSKKTVARLIAAQDSLVETAKEQASSISNII 156
             E+QE+SKK V + I   D L E+  E+   +S  I
Sbjct:   121 EVQETSKKNVLKAIEQADLLQESQNEEWGGLSEDI 155

GO:0030117 "membrane coat" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9DB50	AP1S2_MOUSE	No assigned EC number	0.6052	0.9440	0.95	yes	no
P35181	AP1S1_YEAST	No assigned EC number	0.5	0.8695	0.8974	yes	no
O23685	AP1S2_ARATH	No assigned EC number	0.9254	1.0	0.9938	yes	no
Q8LEZ8	AP1S1_ARATH	No assigned EC number	0.9192	1.0	1.0	yes	no
Q9P7N2	AP1S1_SCHPO	No assigned EC number	0.5625	0.9875	0.9814	yes	no
P56377	AP1S2_HUMAN	No assigned EC number	0.5909	0.9565	0.9808	yes	no
Q3ZBS3	AP1S2_BOVIN	No assigned EC number	0.6052	0.9440	0.95	yes	no
O50016	AP2S1_MAIZE	No assigned EC number	0.5725	0.8012	0.9772	N/A	no
Q7SAQ1	AP2S_NEUCR	No assigned EC number	0.5281	0.8757	0.9860	N/A	no
B0G185	AP1S2_DICDI	No assigned EC number	0.7083	0.8944	0.9350	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	161
COG5030	152	COG5030, APS2, Clathrin adaptor complex, small sub	1e-65
pfam01217	142	pfam01217, Clat_adaptor_s, Clathrin adaptor comple	2e-63

>gnl|CDD|227363 COG5030, APS2, Clathrin adaptor complex, small subunit [Intracellular trafficking and secretion]

 Score =  197 bits (502), Expect = 1e-65
 Identities = 80/150 (53%), Positives = 107/150 (71%)

Query: 1   MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTRGPKLCNFVEWRGYKVVYK 60
           MI FVL+ +RQGK RL KWY+P +  E++K+I ++  +I  R PK  NF+E +  K+VY+
Sbjct: 1   MIKFVLIFNRQGKPRLVKWYTPVSDPEQAKLIADIYELISARKPKESNFIEGKNEKIVYR 60

Query: 61  RYASLYFCMCVDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIA 120
           RYA+LYF   VD +DNEL ILE+IH++VEILDR+FG+VCELDLIFNF K Y ILDE+++ 
Sbjct: 61  RYATLYFVFGVDNDDNELIILELIHNFVEILDRFFGNVCELDLIFNFQKVYAILDEMILG 120

Query: 121 GELQESSKKTVARLIAAQDSLVETAKEQAS 150
           GE+ ESSK  V   + A D+     K   S
Sbjct: 121 GEIIESSKNEVLEHVYALDAESTDDKIGRS 150

Length = 152

>gnl|CDD|110234 pfam01217, Clat_adaptor_s, Clathrin adaptor complex small chain

 Score =  191 bits (486), Expect = 2e-63
 Identities = 78/142 (54%), Positives = 104/142 (73%)

Query: 1   MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTRGPKLCNFVEWRGYKVVYK 60
           MI  +L+ +RQGK RL KWY+PY+  E+ K+I ++  +I  R PK+ NF+E+   KV+YK
Sbjct: 1   MIKAILIFNRQGKPRLAKWYTPYSDPEQQKLIEQIYALISARKPKMSNFIEFNDLKVIYK 60

Query: 61  RYASLYFCMCVDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIA 120
           RYA+LYF + VD +DNEL ILE+IH +VE LDRYFG+VCELDLIFNF K Y ILDE+++ 
Sbjct: 61  RYATLYFVVIVDDQDNELIILELIHRFVESLDRYFGNVCELDLIFNFEKVYLILDEMVMG 120

Query: 121 GELQESSKKTVARLIAAQDSLV 142
           GE+ E+SK  V   +A  D L 
Sbjct: 121 GEILETSKNEVLHRVALLDELA 142

Length = 142

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	161
COG5030	152	APS2 Clathrin adaptor complex, small subunit [Intr	100.0
PF01217	141	Clat_adaptor_s: Clathrin adaptor complex small cha	100.0
KOG0934	145	consensus Clathrin adaptor complex, small subunit	100.0
KOG0936	182	consensus Clathrin adaptor complex, small subunit	100.0
KOG0935	143	consensus Clathrin adaptor complex, small subunit	100.0
KOG0938	446	consensus Adaptor complexes medium subunit family	99.97
KOG3343	175	consensus Vesicle coat complex COPI, zeta subunit	99.96
KOG0937	424	consensus Adaptor complexes medium subunit family	99.9
KOG2740	418	consensus Clathrin-associated protein medium chain	99.9
COG5541	187	RET3 Vesicle coat complex COPI, zeta subunit [Post	99.82
KOG2635	512	consensus Medium subunit of clathrin adaptor compl	98.3
PF15001	189	AP-5_subunit_s1: AP-5 complex subunit sigma-1	97.42
PF03164	415	Mon1: Trafficking protein Mon1; InterPro: IPR00435	96.18
PF08923	119	MAPKK1_Int: Mitogen-activated protein kinase kinas	95.43
PF04099	142	Sybindin: Sybindin-like family ; InterPro: IPR0072	95.19
PF13774	83	Longin: Regulated-SNARE-like domain; PDB: 1IOU_A 3	93.2
KOG0859	217	consensus Synaptobrevin/VAMP-like protein [Intrace	91.93
KOG0862	216	consensus Synaptobrevin/VAMP-like protein SEC22 [I	89.88
COG5122	134	TRS23 Transport protein particle (TRAPP) complex s	85.18
KOG0781	587	consensus Signal recognition particle receptor, al	83.23
KOG0997	523	consensus Uncharacterized conserved protein Sand [	82.88
PF08006	181	DUF1700: Protein of unknown function (DUF1700); In	80.21

>COG5030 APS2 Clathrin adaptor complex, small subunit [Intracellular trafficking and secretion]

Probab=100.00  E-value=2.1e-42  Score=258.83  Aligned_cols=144  Identities=54%  Similarity=0.935  Sum_probs=139.3

Q ss_pred             CeEEEEEEcCCCCeEEEecCCCCCHHHHHHHHHHHHHHHhccCCCccceEEeCCeEEEEEEeCcEEEEEEecCCCCHHHH
Q 031317            1 MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTRGPKLCNFVEWRGYKVVYKRYASLYFCMCVDQEDNELEI   80 (161)
Q Consensus         1 MI~al~Iln~~G~~~l~K~Y~~~~~~~~~~~~~~i~~~i~~r~~~~~~i~~~~~~~~vy~~~~~L~f~~v~~~neNel~i   80 (161)
                      ||++++|+|++|++||.|||.+.+.++|+++.+++++.+++|+.++|++++..+.++|||||++|||++++++++|||++
T Consensus         1 ~i~~vli~nrqgk~RL~K~yt~~~~~e~~kli~~i~~lIs~R~~ke~N~~e~k~~kiVYrrYA~LyF~f~Vd~~dnEl~i   80 (152)
T COG5030           1 MIKFVLIFNRQGKPRLVKWYTPVSDPEQAKLIADIYELISARKPKESNFIEGKNEKIVYRRYATLYFVFGVDNDDNELII   80 (152)
T ss_pred             CeEEEEEEcCCCceeeeEeeccCCcHHHHHHHHHHHHHHHcCCchhcccccccCcEEEeeecCcEEEEEEEcCCCCcchH
Confidence            89999999999999999999999988999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcccchhhHHhhHHHHHHHHHHHHhCcEeeecCHHHHHHHHHhhhhhHHh
Q 031317           81 LEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGELQESSKKTVARLIAAQDSLVET  144 (161)
Q Consensus        81 ~efL~~~ve~L~~yfg~v~E~~i~~Nf~~vy~lLDEmid~G~~~eT~~~~i~~~i~~~~~~~~~  144 (161)
                      +++||.||++||+|||+|||+|+++||.++|.+||||+.+|.++||++..+++++...++.+..
T Consensus        81 L~lIh~FVE~lDr~FgnVCELdlIFNF~kv~~ILdE~i~gG~i~Es~~~~vl~~v~~lda~~~~  144 (152)
T COG5030          81 LELIHNFVEILDRFFGNVCELDLIFNFQKVYAILDEMILGGEIIESSKNEVLEHVYALDAESTD  144 (152)
T ss_pred             HHHHHHHHHHHHHHhccceeeEeEeeHHHHHHHHHHHHhCCeeeecCHHHHHHHHHHHHhhccc
Confidence            9999999999999999999999999999999999999999999999999999999988766543

>PF01217 Clat_adaptor_s: Clathrin adaptor complex small chain; InterPro: IPR022775 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=100.00  E-value=7.8e-42  Score=258.17  Aligned_cols=141  Identities=38%  Similarity=0.673  Sum_probs=131.7

Q ss_pred             CeEEEEEEcCCCCeEEEecCCCCCHHHHHHHHHHHHHHHhccCCCccceEEeCCeEEEEEEeCcEEEEEEecCCCCHHHH
Q 031317            1 MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTRGPKLCNFVEWRGYKVVYKRYASLYFCMCVDQEDNELEI   80 (161)
Q Consensus         1 MI~al~Iln~~G~~~l~K~Y~~~~~~~~~~~~~~i~~~i~~r~~~~~~i~~~~~~~~vy~~~~~L~f~~v~~~neNel~i   80 (161)
                      ||+|++|+|++|+++++|||++.+.++++++.+++.+.+.++++..||++.+++++++|+++++|||+++++.++||+++
T Consensus         1 MI~~i~i~n~~G~~i~~k~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vy~~~~dl~~~~v~~~~eNel~~   80 (141)
T PF01217_consen    1 MIKAILILNSQGKRILSKYYRDVSEEERQKLFEKFIKKKSSRNSKQSPIFEHDNYRIVYKRYSDLYFVVVGDENENELLL   80 (141)
T ss_dssp             SEEEEEEEETTSEEEEEEESSTSTSHHHHHHHHHHHHHHHTSSSSSTSEEEETTEEEEEEEETTEEEEEEESSTSBHHHH
T ss_pred             CEEEEEEEcCCCCEEEehhcCCccHHHHHHHHHHHHHHHHhcccccceeeecccceeeeEeeccEEEEEEeecccchHHH
Confidence            99999999999999999999988877888889998888888877789999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcccchhhHHhhHHHHHHHHHHHHhCcEeeecCHHHHHHHHHhhhhh
Q 031317           81 LEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGELQESSKKTVARLIAAQDSL  141 (161)
Q Consensus        81 ~efL~~~ve~L~~yfg~v~E~~i~~Nf~~vy~lLDEmid~G~~~eT~~~~i~~~i~~~~~~  141 (161)
                      +++||+++++|+.|||++||.++++||++||++||||+|+|+|+|||++.|++++.+++++
T Consensus        81 ~e~l~~~v~~l~~~~~~v~e~~i~~N~~~v~~~LDEiid~G~i~etd~~~I~~~v~~~~~~  141 (141)
T PF01217_consen   81 LEFLHRLVEVLDDYFGNVSEKDILENFDLVYLILDEIIDGGIILETDPNVILKRVTMQDSA  141 (141)
T ss_dssp             HHHHHHHHHHHHHHHSS-SHHHHHHTHHHHHHHHHHHEETTEES--THHHHHHHHHHCCC-
T ss_pred             HHHHHHhhhhhhhhhccccHHHHHHCHHHHHHHHHHHHhCCEEEECCHHHHHHHHHHhhcC
Confidence            9999999999999999999999999999999999999999999999999999999998763

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the small sigma and mu subunits of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and the zeta and delta subunits of various coatomer (COP) adaptors. The small sigma subunit of AP proteins have been characterised in several species [, , , ]. The sigma subunit plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The zeta subunit of coatomers (zeta-COP) is required for coatomer binding to Golgi membranes and for coat-vesicle assembly [, ]. More information about these proteins can be found at Protein of the Month: Clathrin [].; PDB: 1W63_W 2JKR_I 2VGL_S 2JKT_I 2XA7_S 2HF6_A 3TJZ_C.

>KOG0934 consensus Clathrin adaptor complex, small subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.3e-39  Score=243.22  Aligned_cols=142  Identities=61%  Similarity=1.082  Sum_probs=137.2

Q ss_pred             CeEEEEEEcCCCCeEEEecCCCCCHHHHHHHHHHHHHHHhccCCCccceEEeCCeEEEEEEeCcEEEEEEecCCCCHHHH
Q 031317            1 MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTRGPKLCNFVEWRGYKVVYKRYASLYFCMCVDQEDNELEI   80 (161)
Q Consensus         1 MI~al~Iln~~G~~~l~K~Y~~~~~~~~~~~~~~i~~~i~~r~~~~~~i~~~~~~~~vy~~~~~L~f~~v~~~neNel~i   80 (161)
                      ||++++++|++|++||+|||.+.+.++|+.+++++-+.+++|++++|++++++++++|||||++|||++++..++|||++
T Consensus         1 mi~f~LlvsrQGk~rL~k~y~~~~~~er~~i~re~i~~~Lar~pk~csfie~kd~kvVyrryasl~f~~~v~~~dNEL~~   80 (145)
T KOG0934|consen    1 MIKFFLLVSRQGKTRLQKWYEALSIKERKKIERELIKSVLARKPKMCSFIEYKDEKVVYRRYASLFFCVGVEDNDNELAI   80 (145)
T ss_pred             CeEEEEEEeccCceehhHHHhhhcHHHHHHHHHHHHHHHHhCCcccccchhccCceehhhhhhhEEEEEEEecCCchhhH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcccchhhHHhhHHHHHHHHHHHHhCcEeeecCHHHHHHHHHhhhhhH
Q 031317           81 LEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGELQESSKKTVARLIAAQDSLV  142 (161)
Q Consensus        81 ~efL~~~ve~L~~yfg~v~E~~i~~Nf~~vy~lLDEmid~G~~~eT~~~~i~~~i~~~~~~~  142 (161)
                      +|+||++||+||+|||+|||+||++||.++|.+|||++.+|.++||+....++.+..++-+.
T Consensus        81 LE~IH~~vE~lDkYFg~VCELDiiFNfekay~ILde~~~~g~~~e~~k~~~~~~i~~ad~l~  142 (145)
T KOG0934|consen   81 LEFIHNYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLGGEIQETSKNDVLKAIAQADLLQ  142 (145)
T ss_pred             HHHHHHHHHHHHHHhccceeeEEEEehHhHHHHHHHHhcCcchHhhhcccHHHHHHHhhhcc
Confidence            99999999999999999999999999999999999999999999999998888887776543

>KOG0936 consensus Clathrin adaptor complex, small subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.2e-38  Score=239.18  Aligned_cols=146  Identities=38%  Similarity=0.727  Sum_probs=139.9

Q ss_pred             CeEEEEEEcCCCCeEEEecCCCCCHHHHHHHHHHHHHHHhccCCCccceEEe----C--CeEEEEEEeCcEEEEEEecCC
Q 031317            1 MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTRGPKLCNFVEW----R--GYKVVYKRYASLYFCMCVDQE   74 (161)
Q Consensus         1 MI~al~Iln~~G~~~l~K~Y~~~~~~~~~~~~~~i~~~i~~r~~~~~~i~~~----~--~~~~vy~~~~~L~f~~v~~~n   74 (161)
                      ||+|++|+|++|++||.|||.+.+.+.||.+.+++|..+.+|++..|+|++.    +  +.+++||+|+.|||+.++|+.
T Consensus         1 MI~AvlifNn~gkPRL~KFY~p~~~~~Qq~lir~vf~lvs~R~~n~~nFLe~~~l~g~~d~rlIYrhYATLYFvfvvD~s   80 (182)
T KOG0936|consen    1 MIKAVLIFNNKGKPRLVKFYTPVDEEKQQQLIREVFHLVSKRPDNVCNFLEGNSLIGGSDNRLIYRHYATLYFVFVVDSS   80 (182)
T ss_pred             CeeEEEEecCCCCcceeeecCcCChHHHHHHHHHHHHHHHcCCchHhhhhccccccCCccceeehheeeeEEEEEEEcCC
Confidence            9999999999999999999999888889999999999999999999999974    3  789999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHHHhcccchhhHHhhHHHHHHHHHHHHhCcEeeecCHHHHHHHHHhhhhhHHhhh
Q 031317           75 DNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGELQESSKKTVARLIAAQDSLVETAK  146 (161)
Q Consensus        75 eNel~i~efL~~~ve~L~~yfg~v~E~~i~~Nf~~vy~lLDEmid~G~~~eT~~~~i~~~i~~~~~~~~~~~  146 (161)
                      ||||.++++||.|||+||++|.++||.|+++|+.++|.+|+|++.+|.++||+.+.|...+..+.++.|+..
T Consensus        81 EsEL~iLDLIQvfVEtLDkCF~nVcELDliF~~~k~h~iL~EiV~GGmVlETn~neIv~av~~~nkleks~~  152 (182)
T KOG0936|consen   81 ESELGILDLIQVFVETLDKCFENVCELDLIFNWQKVHAILAEIVMGGMVLETNMNEIVAAVDEQNKLEKSED  152 (182)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHhhhhhhheeeHHHHHHHHHHHHhCCeEEeccHHHHHHHHHHhchhhhccC
Confidence            999999999999999999999999999999999999999999999999999999999999999998887654

>KOG0935 consensus Clathrin adaptor complex, small subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.3e-38  Score=230.87  Aligned_cols=141  Identities=50%  Similarity=0.962  Sum_probs=131.9

Q ss_pred             CeEEEEEEcCCCCeEEEecCCCCCHHHHHHHHHHHHHHHhccCCCccceEEeCCeEEEE-EEeCcEEEEEEecCCCCHHH
Q 031317            1 MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTRGPKLCNFVEWRGYKVVY-KRYASLYFCMCVDQEDNELE   79 (161)
Q Consensus         1 MI~al~Iln~~G~~~l~K~Y~~~~~~~~~~~~~~i~~~i~~r~~~~~~i~~~~~~~~vy-~~~~~L~f~~v~~~neNel~   79 (161)
                      ||++++|+|++|++|++|||-+.+..++++++.++++.+..|+.+..++++..+.+.+| |||++|||+++++.-+|+++
T Consensus         1 mi~FILiqNr~Gk~RLak~yv~~dd~ek~~~~~~vh~lvs~Rd~K~~~~~~~~~~~~~~~rryagLyf~~~vd~tDnela   80 (143)
T KOG0935|consen    1 MIRFILIQNRAGKTRLAKWYVQFDDDEKQKLIEEVHALVTVRDAKHTNFVEFRNFKIIYRRRYAGLYFCICVDVTDNELA   80 (143)
T ss_pred             CeEEEEEEccccceeheeeeeccCchHHHHHHHHHHHHHhhccchhhhheeeeeceEEEEEeeCCEEEEEEEecCCchHH
Confidence            99999999999999999999997777889999999999999998876666666666655 59999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcccchhhHHhhHHHHHHHHHHHHhCcEeeecCHHHHHHHHHhhhhh
Q 031317           80 ILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGELQESSKKTVARLIAAQDSL  141 (161)
Q Consensus        80 i~efL~~~ve~L~~yfg~v~E~~i~~Nf~~vy~lLDEmid~G~~~eT~~~~i~~~i~~~~~~  141 (161)
                      .++-||.|||+|+.||||+||.|+++||.+||.++|||+-+|.++||++..+++|+.+.+++
T Consensus        81 yLe~IHlFVEvLd~fF~NVCELDlvFNFyKVy~i~DEm~l~GEi~Etsk~~vlerl~~L~~L  142 (143)
T KOG0935|consen   81 YLEHIHLFVEVLDEFFHNVCELDLVFNFYKVYTIVDEMFLAGEIRETSKTKVLERLLMLQSL  142 (143)
T ss_pred             HHHHHHHHHHHHHHHhccccceeeeeeeeeHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999999999999999999998875

>KOG0938 consensus Adaptor complexes medium subunit family [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=5.2e-31  Score=222.22  Aligned_cols=134  Identities=19%  Similarity=0.256  Sum_probs=123.8

Q ss_pred             CeEEEEEEcCCCCeEEEecCCCCCHHHHHHHHHHHHHH-HhccCCCccceEEeCCeEEEEEEeCcEEEEEEecCCCCHHH
Q 031317            1 MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGV-ILTRGPKLCNFVEWRGYKVVYKRYASLYFCMCVDQEDNELE   79 (161)
Q Consensus         1 MI~al~Iln~~G~~~l~K~Y~~~~~~~~~~~~~~i~~~-i~~r~~~~~~i~~~~~~~~vy~~~~~L~f~~v~~~neNel~   79 (161)
                      ||+++||+|.+|+++|.|.||+.    -++-.-++|+. +++..+..||++.+++++|+|.|..+||+++++++|.|.++
T Consensus         1 misglfi~n~rGevlink~fr~d----lkrs~~diFRv~vi~n~d~r~PV~~igsttf~~~r~~nl~lvaitksN~Nva~   76 (446)
T KOG0938|consen    1 MISGLFIYNLRGEVLINKTFRDD----LKRSIVDIFRVQVINNLDVRSPVLTIGSTTFHHIRSSNLWLVAITKSNANVAA   76 (446)
T ss_pred             CcceEEEEeccCcEEEehhhhhh----hhhhHHHHHHHhhhhccccCCCeeEecceeEEEEeeccEEEEEEecCCCchhh
Confidence            99999999999999999999983    34556677877 77776679999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcccchhhHHhhHHHHHHHHHHHHhCcEeeecCHHHHHHHHHhh
Q 031317           80 ILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGELQESSKKTVARLIAAQ  138 (161)
Q Consensus        80 i~efL~~~ve~L~~yfg~v~E~~i~~Nf~~vy~lLDEmid~G~~~eT~~~~i~~~i~~~  138 (161)
                      ++|||+.++.+|.+|||..+|+.|++||+++||+||||+|+|+||+|+|+.++..++.+
T Consensus        77 v~eFl~kl~avm~aYfgk~~Eeaiknnf~lI~ElLDemld~G~pqnte~~al~~~is~~  135 (446)
T KOG0938|consen   77 VFEFLYKLDAVMNAYFGKDREEAIKNNFVLIYELLDEMLDFGIPQNTEPNALKAQISQK  135 (446)
T ss_pred             HHHHHHHHHHHHHHHhcccchhhhhhceEeHHHHHHHHHhcCCCccCChhHHHhhhhhh
Confidence            99999999999999999999999999999999999999999999999999877777654

>KOG3343 consensus Vesicle coat complex COPI, zeta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=1.5e-28  Score=187.99  Aligned_cols=135  Identities=24%  Similarity=0.377  Sum_probs=124.3

Q ss_pred             eEEEEEEcCCCCeEEEecCCC--CC-HHHHHHHHHHHHHHHhccCCCccceEEeCCeEEEEEEeCcEEEEEEecCCCCHH
Q 031317            2 IHFVLLISRQGKVRLTKWYSP--YT-QKERSKVIRELSGVILTRGPKLCNFVEWRGYKVVYKRYASLYFCMCVDQEDNEL   78 (161)
Q Consensus         2 I~al~Iln~~G~~~l~K~Y~~--~~-~~~~~~~~~~i~~~i~~r~~~~~~i~~~~~~~~vy~~~~~L~f~~v~~~neNel   78 (161)
                      +++++|+|++|+|+++|||.+  ++ -++|+++|+.+|.++.+   ..+.|..++|..++|+..-||+|++++..+|||+
T Consensus         9 vk~iliLD~~G~Ri~aKYY~~~~~s~vkeqkaFEK~lF~KT~k---t~~eI~~ldg~~vvYk~~~Dl~fyv~G~~~ENEl   85 (175)
T KOG3343|consen    9 VKAILILDSDGKRILAKYYDDPHPSTVKEQKAFEKNLFSKTSK---TESEILLLDGNTVVYKSVIDLHFYVVGSEEENEL   85 (175)
T ss_pred             hheEEEEcCCCCEeeeeecCCCcchhHHHHHHHHHHHhccccc---ccceeEEecCcEEEEEecccEEEEEecCcchhHH
Confidence            679999999999999999997  44 67899999999988854   3567889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcc-cchhhHHhhHHHHHHHHHHHHhCcEeeecCHHHHHHHHHhhh
Q 031317           79 EILEIIHHYVEILDRYFGS-VCELDLIFNFHKAYYILDEILIAGELQESSKKTVARLIAAQD  139 (161)
Q Consensus        79 ~i~efL~~~ve~L~~yfg~-v~E~~i~~Nf~~vy~lLDEmid~G~~~eT~~~~i~~~i~~~~  139 (161)
                      ++.+.|+++.+++...|.. +....+.+|++.+...+|||+|+|.++||+|+.|..|+....
T Consensus        86 ~L~svL~~l~dal~llLr~nveKr~llEN~D~i~L~~DEiiD~GvILEtdp~~ia~rv~~~~  147 (175)
T KOG3343|consen   86 MLMSVLTCLFDALSLLLRKNVEKRELLENLDLIFLALDEIIDGGVILETDPNQIAQRVALRP  147 (175)
T ss_pred             HHHHHHHHHHHHHHHHHHhChhHHHHHhhhccceeehhhhccCceEEecCHHHHHHHhccCC
Confidence            9999999999999999976 666799999999999999999999999999999999998643

>KOG0937 consensus Adaptor complexes medium subunit family [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=3e-23  Score=179.79  Aligned_cols=134  Identities=16%  Similarity=0.276  Sum_probs=116.4

Q ss_pred             eEEEEEEcCCCCeEEEecCCCCCHHHHHHHHHHHHHHHhcc--CCCccceEEeCCeEEEEEEeCcEEEEEEecCCCCHHH
Q 031317            2 IHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTR--GPKLCNFVEWRGYKVVYKRYASLYFCMCVDQEDNELE   79 (161)
Q Consensus         2 I~al~Iln~~G~~~l~K~Y~~~~~~~~~~~~~~i~~~i~~r--~~~~~~i~~~~~~~~vy~~~~~L~f~~v~~~neNel~   79 (161)
                      ++|+|++|.+|+++++|.||+..+.   .....++++....  .+..+|++.++|..++|.+++++|++++++.|.|+..
T Consensus         1 ~sa~fild~~G~~lisr~yr~dv~~---s~~~~F~~~l~~~e~~~~~~p~l~~~g~~~~~ik~s~lylv~~~~~n~~a~~   77 (424)
T KOG0937|consen    1 ASAVFILDHKGEVLISRDYRGDVPM---SSTEKFFRKLFEKEEGDESPPFLVHDGSRFIHIKHSNLYLVAGTRPNVSAAL   77 (424)
T ss_pred             CceEEEEcCCCcEeEeecccccCCh---hhhhhHHHHHhhhcccCCCCCeEEeCCceEEEEeecceEEEEEeccCCCHHH
Confidence            5899999999999999999984321   2234444443232  3457999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcccchhhHHhhHHHHHHHHHHHHhCcEeeecCHHHHHHHHHhh
Q 031317           80 ILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGELQESSKKTVARLIAAQ  138 (161)
Q Consensus        80 i~efL~~~ve~L~~yfg~v~E~~i~~Nf~~vy~lLDEmid~G~~~eT~~~~i~~~i~~~  138 (161)
                      +++||+++++++.+||+.+.|+.+++||+++||+|||++|+||||.|+++.+.++++..
T Consensus        78 v~~~l~~~~~v~~~y~~~l~e~si~~n~vlvyElLde~mDFGypQ~t~s~iL~~yi~~~  136 (424)
T KOG0937|consen   78 VLSFLYAVADVFGDYLSELEEESIRDNFVLVYELLDEVMDFGYPQTTDSEILKNYITQK  136 (424)
T ss_pred             HHHHHHHHHHHHHHHhccCCccceecchHHHHHHHHHHhccCCcccchHHHHHHHhccc
Confidence            99999999999999999999999999999999999999999999999999777777655

>KOG2740 consensus Clathrin-associated protein medium chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=1.4e-23  Score=178.30  Aligned_cols=140  Identities=21%  Similarity=0.252  Sum_probs=118.4

Q ss_pred             CeEEEEEEcCCCCeEEEecCCCCCHHHHHHHHHHHHHHHhcc--CCCccceEEeCCeEEEEEEeCcEEEEEEecCCCCHH
Q 031317            1 MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTR--GPKLCNFVEWRGYKVVYKRYASLYFCMCVDQEDNEL   78 (161)
Q Consensus         1 MI~al~Iln~~G~~~l~K~Y~~~~~~~~~~~~~~i~~~i~~r--~~~~~~i~~~~~~~~vy~~~~~L~f~~v~~~neNel   78 (161)
                      ||.++|+.|.+|+++++|++++-...  +.+++.+|..-.+.  .+..+|++..+.|++.-.-..++||++++..+..||
T Consensus         1 mi~siflidtsg~l~lek~~~g~t~~--rsic~~f~e~~~~~~~~e~~ppvi~~p~hylfsv~~~~i~~~~~st~e~pPL   78 (418)
T KOG2740|consen    1 MILSIFLIDTSGDLLLEKHLKGSTVV--RSICDYFFEDQSSDDDLEHVPPVISTPHHYLFSVYRDLIFFCAVSTVETPPL   78 (418)
T ss_pred             CeeEEEEEcCCchhhhhHhhCCceee--eehHHHHHHhhhhccccccCCceecCCceeeeeeeccCcEEEEEEeccCCCh
Confidence            99999999999999999999962221  35777777664443  355788888888988777777999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcccchhhHHhhHHHHHHHHHHHHhCcEeeecCHHHHHHHHHhhhhhH
Q 031317           79 EILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGELQESSKKTVARLIAAQDSLV  142 (161)
Q Consensus        79 ~i~efL~~~ve~L~~yfg~v~E~~i~~Nf~~vy~lLDEmid~G~~~eT~~~~i~~~i~~~~~~~  142 (161)
                      +++|||+|++++|..|||+++|..|++|++.||++||||+|+|+|+.|||+.+.+-+....-+.
T Consensus        79 ~~iefL~rv~dv~~eyFg~~s~~~Ik~N~~vv~ell~emiDnGfpl~tE~NiLke~i~pps~l~  142 (418)
T KOG2740|consen   79 MVIEFLHRVVDVLLEYFGGLSESKIKDNVVVVYELLDEMIDNGFPLVTEPNILKELIPPPSFLS  142 (418)
T ss_pred             hHHHHHHHHHHHHHHHhcccCHhHhhcceeeHHHHHHHHHHcCCCcccChhHHHhhcCChHHHH
Confidence            9999999999999999999999999999999999999999999999999985555544443333

>COG5541 RET3 Vesicle coat complex COPI, zeta subunit [Posttranslational modification, protein turnover, chaperones]

Probab=99.82  E-value=4.1e-20  Score=141.48  Aligned_cols=133  Identities=16%  Similarity=0.237  Sum_probs=121.5

Q ss_pred             eEEEEEEcCCCCeEEEecCCCC-----------CHHHHHHHHHHHHHHHhccCCCccceEEeCCeEEEEEEeCcEEEEEE
Q 031317            2 IHFVLLISRQGKVRLTKWYSPY-----------TQKERSKVIRELSGVILTRGPKLCNFVEWRGYKVVYKRYASLYFCMC   70 (161)
Q Consensus         2 I~al~Iln~~G~~~l~K~Y~~~-----------~~~~~~~~~~~i~~~i~~r~~~~~~i~~~~~~~~vy~~~~~L~f~~v   70 (161)
                      +.|++|+|++|++++.|||.++           +-++++.+++.+++++.+.   +..++.+.++.++|+++.++.|+.+
T Consensus         8 v~a~LilDsqGeriy~kyy~pph~~eg~~~vFnsvkkekefek~l~eKt~k~---~~~Il~f~d~lV~~k~~~dv~~yiv   84 (187)
T COG5541           8 VEALLILDSQGERIYRKYYQPPHRSEGHQLVFNSVKKEKEFEKKLAEKTAKD---RESILMFYDRLVMCKRLDDVLLYIV   84 (187)
T ss_pred             eeeeEEecCCccchhhhhcCCcccccccchhhcchhHHHHHHHHHHHHhhcC---ccceeeEcceeeeeeeehhEEEEEe
Confidence            6899999999999999999874           3446778999999887542   5679999999999999999999999


Q ss_pred             ecCCCCHHHHHHHHHHHHHHHHHHhccc-chhhHHhhHHHHHHHHHHHHhCcEeeecCHHHHHHHHHh
Q 031317           71 VDQEDNELEILEIIHHYVEILDRYFGSV-CELDLIFNFHKAYYILDEILIAGELQESSKKTVARLIAA  137 (161)
Q Consensus        71 ~~~neNel~i~efL~~~ve~L~~yfg~v-~E~~i~~Nf~~vy~lLDEmid~G~~~eT~~~~i~~~i~~  137 (161)
                      +.-+|||.++.+.+..+..+|...|+.. .+..+.+|++.+..++||.+|+|.++||+++.|+.|+..
T Consensus        85 ~~meeNE~~l~q~f~~ir~Al~li~k~~~dkr~v~enYDqivl~vdEtid~Gvilet~s~~ia~rv~K  152 (187)
T COG5541          85 SPMEENEPFLGQVFDEIRAALILIVKTPTDKRNVWENYDQIVLLVDETIDEGVILETKSDEIADRVPK  152 (187)
T ss_pred             cccccccHHHHHHHHHHHHHHHHHHcCCcchhhHHhhhceEEEeeehhcccceEeecChHHHHHhCCC
Confidence            9999999999999999999999999987 556799999999999999999999999999999999986

>KOG2635 consensus Medium subunit of clathrin adaptor complex [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.30  E-value=1.3e-05  Score=70.72  Aligned_cols=131  Identities=19%  Similarity=0.331  Sum_probs=108.1

Q ss_pred             eEEEEEEcCCCCeEEEecCCCCCHHHHHHHHHHH--HHHHhccCCCccceEEeCCeEEEEEEeCcEEEEEEecCCCCHHH
Q 031317            2 IHFVLLISRQGKVRLTKWYSPYTQKERSKVIREL--SGVILTRGPKLCNFVEWRGYKVVYKRYASLYFCMCVDQEDNELE   79 (161)
Q Consensus         2 I~al~Iln~~G~~~l~K~Y~~~~~~~~~~~~~~i--~~~i~~r~~~~~~i~~~~~~~~vy~~~~~L~f~~v~~~neNel~   79 (161)
                      .-+.-+.+.+|+.+++|.|+.++.   .+++.-+  |.+..+ ..++.-+++.+++++||.=..++|++.+|.-+-|-|-
T Consensus         3 vlaa~i~t~~Gk~ivsRqf~~Msr---~RIEgLl~aFpkLv~-~~~qhT~vEt~~VRYVYqP~d~lY~vLITtk~SNIle   78 (512)
T KOG2635|consen    3 VLAASINTKTGKAIVSRQFREMSR---SRIEGLLAAFPKLVS-AGKQHTFVETDSVRYVYQPLDNLYIVLITTKQSNILE   78 (512)
T ss_pred             EEEEEEeecCCceeeehHhHhhhH---HHHHHHHHHhHHhhc-cCCCccEEecccEEEEEEecccEEEEEEeccccchhh
Confidence            346678899999999999998754   3555554  444433 2346779999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcccchhhHHhhHHHHHHHHHHHHhCcEeeecCHHHHHHHHH
Q 031317           80 ILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGELQESSKKTVARLIA  136 (161)
Q Consensus        80 i~efL~~~ve~L~~yfg~v~E~~i~~Nf~~vy~lLDEmid~G~~~eT~~~~i~~~i~  136 (161)
                      -++.|+.|..+.-.|+..+.|+.|.+|-=.+...+||++-=||=-..+...|..+..
T Consensus        79 Dl~TL~Lfskvipey~~slde~eI~~~~FelifAFDEivsLGyre~v~laQikty~e  135 (512)
T KOG2635|consen   79 DLETLRLFSKVIPEYCSSLDEKEILENAFELIFAFDEIVSLGYRENVNLAQIKTYLE  135 (512)
T ss_pred             HHHHHHHHHHhchhhhhhhhHHHHHHhhhhhhhccchhhhhcccccccHHHhhhhhc
Confidence            999999999999999999999999999767778899999999766666555555443

>PF15001 AP-5_subunit_s1: AP-5 complex subunit sigma-1

Probab=97.42  E-value=0.014  Score=46.57  Aligned_cols=77  Identities=17%  Similarity=0.241  Sum_probs=69.6

Q ss_pred             CeEEEEEEeCcEEEEEEecCCCCHHHHHHHHHHHHHHHHHHhcccch-hhHHhhHHHHHHHHHHHHhCcEeeecCHHH
Q 031317           54 GYKVVYKRYASLYFCMCVDQEDNELEILEIIHHYVEILDRYFGSVCE-LDLIFNFHKAYYILDEILIAGELQESSKKT  130 (161)
Q Consensus        54 ~~~~vy~~~~~L~f~~v~~~neNel~i~efL~~~ve~L~~yfg~v~E-~~i~~Nf~~vy~lLDEmid~G~~~eT~~~~  130 (161)
                      ...++|....++.|..|+++.||-++.-.+|..++..|.++|..+.- ..+...-+.|..+|+..+=.|-.+--+.+.
T Consensus       103 ~k~vvW~~v~~l~ftLVce~hEN~lLa~~~L~~~~~~l~~~~~~l~~~~e~l~k~d~i~aiL~~fLP~GQLLFlN~~~  180 (189)
T PF15001_consen  103 PKIVVWLGVGSLCFTLVCEPHENRLLAENTLRLFIRHLLEHLKILSQPSEVLLKSDRILAILHRFLPHGQLLFLNHRF  180 (189)
T ss_pred             CcEEEeeccCCEEEEEEecCchhHHHHHHHHHHHHHHHHHHHHHhCcHHHhhhhHHHHHHHHHHhCCCCcEEEEcHHH
Confidence            46779999999999999999999999999999999999999977544 567779999999999999999999888873

>PF03164 Mon1: Trafficking protein Mon1; InterPro: IPR004353 Members of this family have been called SAND proteins [] although these proteins do not contain a SAND domain

Probab=96.18  E-value=0.18  Score=44.65  Aligned_cols=90  Identities=9%  Similarity=0.148  Sum_probs=58.5

Q ss_pred             EEEEEEcCCCCeEEEecCCCCCHHHHHHHHHHHHHHHhc--cCCCccceEEeCCeEEEEEEeCcEEEEEEecCCCCHHHH
Q 031317            3 HFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILT--RGPKLCNFVEWRGYKVVYKRYASLYFCMCVDQEDNELEI   80 (161)
Q Consensus         3 ~al~Iln~~G~~~l~K~Y~~~~~~~~~~~~~~i~~~i~~--r~~~~~~i~~~~~~~~vy~~~~~L~f~~v~~~neNel~i   80 (161)
                      +-+||+.+.||+++++|  +. ...-..+..-+...+..  ..++.---+..+++++++...+.|+++++++..|++..+
T Consensus        12 kh~fIlS~AGKPIysr~--G~-e~~l~~~~g~~~aiiS~~~~~~d~l~~i~~~~~~ivfl~r~pl~lv~vS~~~e~~~~l   88 (415)
T PF03164_consen   12 KHFFILSSAGKPIYSRY--GD-EDKLSSLMGVIQAIISFFQSNGDELRSIRAGDHRIVFLNRGPLILVAVSKTGESESQL   88 (415)
T ss_pred             CeEEEECCCCceeEEec--CC-hHHHHHHHHHHHHHHHHHHhCCCcEEEEEeCCEEEEEEecCCEEEEEEcCCcCCHHHH
Confidence            35899999999999998  32 11122233333333221  112233344679999999999999999999999997776


Q ss_pred             HHHHHHHHHHHHHHh
Q 031317           81 LEIIHHYVEILDRYF   95 (161)
Q Consensus        81 ~efL~~~ve~L~~yf   95 (161)
                      ..-|..+...+-..+
T Consensus        89 ~~qL~~ly~qils~l  103 (415)
T PF03164_consen   89 RKQLDYLYSQILSIL  103 (415)
T ss_pred             HHHHHHHHHHHHHhc
Confidence            665555554444333

In Saccharomyces cerevisiae a protein complex of Mon1 and Ccz1 functions with the small GTPase Ypt7 to mediate vesicle trafficking to the vacuole [, ]. The Mon1/Ccz1 complex is conserved in eukaryotic evolution and members of this family (previously known as DUF254) are distant homologues to domains of known structure that assemble into cargo vesicle adapter (AP) complexes [, ].

>PF08923 MAPKK1_Int: Mitogen-activated protein kinase kinase 1 interacting; InterPro: IPR015019 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=95.43  E-value=0.32  Score=36.05  Aligned_cols=92  Identities=15%  Similarity=0.192  Sum_probs=63.0

Q ss_pred             eEEEEEEcCCCCeEEEecCCC-CCHHHHHHHHHHHH---HHHhccC--CCccceEEeCCeEEEEEEeCcEEEEEEecCCC
Q 031317            2 IHFVLLISRQGKVRLTKWYSP-YTQKERSKVIRELS---GVILTRG--PKLCNFVEWRGYKVVYKRYASLYFCMCVDQED   75 (161)
Q Consensus         2 I~al~Iln~~G~~~l~K~Y~~-~~~~~~~~~~~~i~---~~i~~r~--~~~~~i~~~~~~~~vy~~~~~L~f~~v~~~ne   75 (161)
                      +.+++|-|++|=+++.=.... +...-++.+...+-   .+..+-+  ....-+..++++.+++.....+|+.+++.++.
T Consensus        17 l~~I~itDrDGvpi~~v~~~~~~~~~~~~~~~~tf~~a~~Q~~KL~lG~nk~ii~~Y~~~qvv~~~~~pl~it~ias~~a   96 (119)
T PF08923_consen   17 LQAIVITDRDGVPIAKVSSDSAPESAMRPSLLSTFAMAIDQASKLGLGKNKSIIAYYDSYQVVQFNKLPLYITFIASSNA   96 (119)
T ss_dssp             EEEEEEEETTS-EEEEEE-TTS-GGGGSHHHHCCHHHHHHHHTTSSS-SEEEEEEEESSEEEEEEEETTEEEEEEEETTS
T ss_pred             eEEEEEECCCCcEEEEecCCCCcchhhhhHHHHHHHHHhhcccccCCCCceEEEEEeCCEEEEEEeCCCeEEEEEecCCC
Confidence            578999999999988755444 22222334443321   1222211  23455778999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHH
Q 031317           76 NELEILEIIHHYVEILDR   93 (161)
Q Consensus        76 Nel~i~efL~~~ve~L~~   93 (161)
                      |--+++.+-+.+...|..
T Consensus        97 N~G~il~l~~~L~~~l~~  114 (119)
T PF08923_consen   97 NTGLILSLEEELAPILNE  114 (119)
T ss_dssp             -HHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHhHHHHHHHHHH
Confidence            999999998888887764

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents Mitogen-activated protein kinase kinase 1 interacting protein, which is a small subcellular adaptor protein required for MAPK signalling and ERK1/2 activation. The overall topology of this domain has a central five-stranded beta-sheet sandwiched between a two alpha-helix and a one alpha-helix layer []. ; PDB: 1VEU_A 1VET_A 1SKO_A 2ZL1_A 3CPT_A.

>PF04099 Sybindin: Sybindin-like family ; InterPro: IPR007233 Sybindin is a physiological syndecan-2 ligand on dendritic spines, the small protrusions on the surface of dendrites that receive the vast majority of excitatory synapses

Probab=95.19  E-value=0.35  Score=36.63  Aligned_cols=95  Identities=20%  Similarity=0.297  Sum_probs=57.2

Q ss_pred             eEEEEEEcCCCCeEEEecCCCC--------CHHHHHHHHHHHHHH--Hh-ccCC--------Cccce--EEeCCeEE-EE
Q 031317            2 IHFVLLISRQGKVRLTKWYSPY--------TQKERSKVIRELSGV--IL-TRGP--------KLCNF--VEWRGYKV-VY   59 (161)
Q Consensus         2 I~al~Iln~~G~~~l~K~Y~~~--------~~~~~~~~~~~i~~~--i~-~r~~--------~~~~i--~~~~~~~~-vy   59 (161)
                      |..++|+|+.|..+..|-|...        +..+++.+..-+|-.  +. +-+.        ..+.+  +..+.+++ .|
T Consensus         1 IyslyI~nr~G~lIy~~~~~~~~~~~~~~~~~ne~~ll~g~l~sl~~i~~klsp~~~~~~~~~~~g~~~~~T~~yklh~~   80 (142)
T PF04099_consen    1 IYSLYIFNRSGGLIYYREWNRSKNEGQPKLSSNEYKLLAGMLHSLKAIASKLSPVDSKPNEPGSSGFESFETDTYKLHCF   80 (142)
T ss_dssp             EEEEEEE-TTS-EEEEEETSSSS--E-SSSCHHHHHHHHHHHHHHHHHHHHT-SSSSSS-SSS--SEEEEEESS-EEEEE
T ss_pred             CeEEEEEeCCcceeeehhhCCCCccccCCCChhHHHHHHhhHHHHHHHHHHhCCCCcccccccceeEEEEEeCCEEEEEE
Confidence            6789999999999999988652        234455555555422  11 1111        11223  45678888 46


Q ss_pred             EEeCcEEEEEEecCCCCHHHHHHHHHHHHHHHHHHh-cc
Q 031317           60 KRYASLYFCMCVDQEDNELEILEIIHHYVEILDRYF-GS   97 (161)
Q Consensus        60 ~~~~~L~f~~v~~~neNel~i~efL~~~ve~L~~yf-g~   97 (161)
                      ..-.++-|++++|.+...+ .-++++.+.++.-+|- +|
T Consensus        81 eT~TGlKFvl~td~~~~~~-~~~l~~~~~~lY~dyV~KN  118 (142)
T PF04099_consen   81 ETPTGLKFVLITDPNVPSL-RDELLRIYYELYVDYVVKN  118 (142)
T ss_dssp             E-TTS-EEEEEE-TTCCHC-HHHHHHHHHHHHHHHHHS-
T ss_pred             EcCcCcEEEEEecCCCccH-HHHHHHHHHHHHHHHHhhC
Confidence            6688899999999998653 5567788888887774 44

Syndecan-2 induces spine formation by recruiting intracellular vesicles toward postsynaptic sites through the interaction with synbindin []. ; GO: 0006888 ER to Golgi vesicle-mediated transport, 0005801 cis-Golgi network; PDB: 3CUE_C 2J3T_C 2ZMV_B 2JSN_A.

>PF13774 Longin: Regulated-SNARE-like domain; PDB: 1IOU_A 3BW6_A 1H8M_A 3EGX_C 2NUP_C 3EGD_C 2NUT_C 3KYQ_A 1IFQ_B 2VX8_D

Probab=93.20  E-value=0.91  Score=30.66  Aligned_cols=48  Identities=10%  Similarity=0.106  Sum_probs=43.2

Q ss_pred             eEEeCCeEEEEEEeCcEEEEEEecCCCCHHHHHHHHHHHHHHHHHHhc
Q 031317           49 FVEWRGYKVVYKRYASLYFCMCVDQEDNELEILEIIHHYVEILDRYFG   96 (161)
Q Consensus        49 i~~~~~~~~vy~~~~~L~f~~v~~~neNel~i~efL~~~ve~L~~yfg   96 (161)
                      .++.+++.+-|...+++.++++++.+-+.-..+.||..+.+-+..-++
T Consensus        18 s~~~~~~~fh~~~~~~i~~~citd~~~~~r~aF~fL~~i~~~F~~~~~   65 (83)
T PF13774_consen   18 SYESGNYVFHYLVEDGIAYLCITDKSYPKRVAFAFLEEIKQEFIQTYG   65 (83)
T ss_dssp             EEEETTEEEEEEEETTEEEEEEEETTS-HHHHHHHHHHHHHHHHHHCT
T ss_pred             EEEECCEEEEEEEcCCeEEEEEEcCCCCcchHHHHHHHHHHHHHHHcC
Confidence            456899999999999999999999999999999999999999988887

...

>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.93  E-value=3.8  Score=33.23  Aligned_cols=89  Identities=12%  Similarity=0.141  Sum_probs=63.7

Q ss_pred             EEEEcCCCCeEEEecCCC-CCHHHHHHHHHHHHHHHhccCCCccceEEeCCeEEEEEEeCcEEEEEEecCCCCHHHHHHH
Q 031317            5 VLLISRQGKVRLTKWYSP-YTQKERSKVIRELSGVILTRGPKLCNFVEWRGYKVVYKRYASLYFCMCVDQEDNELEILEI   83 (161)
Q Consensus         5 l~Iln~~G~~~l~K~Y~~-~~~~~~~~~~~~i~~~i~~r~~~~~~i~~~~~~~~vy~~~~~L~f~~v~~~neNel~i~ef   83 (161)
                      ++=+=.+|-++|++|=.- -+   -..+.+.+-.++-..++ .---...|+|.|-|.+-+++.++++++.+..--.-+.|
T Consensus         4 iYs~VARGTvvLaeft~~~gN---f~sva~qiL~klp~~~n-~k~tYs~d~y~Fh~l~~dg~tylcvadds~gR~ipfaF   79 (217)
T KOG0859|consen    4 IYSFVARGTVILAEFTEFSGN---FSSIAAQILQKLPSSSN-SKFTYSCDGYTFHYLVEDGLTYLCVADDSAGRQIPFAF   79 (217)
T ss_pred             eEEEEecceEEEEeeeeccCC---HHHHHHHHHHhCCCCCC-CceEEecCCeEEEEEEeCCeEEEEEEeccccccccHHH
Confidence            344557899999996432 11   12345555555533322 11134579999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcc
Q 031317           84 IHHYVEILDRYFGS   97 (161)
Q Consensus        84 L~~~ve~L~~yfg~   97 (161)
                      |.++-+-+.+-+|.
T Consensus        80 Le~Ik~~F~k~YG~   93 (217)
T KOG0859|consen   80 LERIKEDFKKRYGG   93 (217)
T ss_pred             HHHHHHHHHHHhcc
Confidence            99998887776665

>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.88  E-value=4.3  Score=33.11  Aligned_cols=74  Identities=11%  Similarity=0.183  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHHHHHhccCCCccceEEeCCeEEEEEEeCcEEEEEEecCCCCHHHHHHHHHHHHHHHHHHhcccch
Q 031317           26 KERSKVIRELSGVILTRGPKLCNFVEWRGYKVVYKRYASLYFCMCVDQEDNELEILEIIHHYVEILDRYFGSVCE  100 (161)
Q Consensus        26 ~~~~~~~~~i~~~i~~r~~~~~~i~~~~~~~~vy~~~~~L~f~~v~~~neNel~i~efL~~~ve~L~~yfg~v~E  100 (161)
                      .+.++-.+.++++....+...|.+ +.+++.|.|.-..++++++.++.+-+--+.+.+|..+.+-+.+-+|.-++
T Consensus        31 ~e~r~q~K~L~kkLs~~s~~r~Si-etg~f~fHfli~~~Vcylvicd~~yP~kLAF~YLedL~~EF~~~~~~~~~  104 (216)
T KOG0862|consen   31 LEYRQQAKSLFKKLSQQSPTRCSI-ETGPFVFHFLIESGVCYLVICDKSYPRKLAFSYLEDLAQEFDKSYGKNII  104 (216)
T ss_pred             HHHHHHHHHHHHhccCCCCccccc-ccCCeEEEEEecCCEEEEEEecCCCcHHHHHHHHHHHHHHHHHhcccccC
Confidence            445555667777664433334444 56889999999999999999999999999999999999999998886433

>COG5122 TRS23 Transport protein particle (TRAPP) complex subunit [Intracellular trafficking and secretion]

Probab=85.18  E-value=6.6  Score=29.19  Aligned_cols=91  Identities=16%  Similarity=0.314  Sum_probs=55.2

Q ss_pred             eEEEEEEcCCCCeEEEecCCCCC----HHHHHHHHHHHHHH--Hhc-cCC--Cccc--eEEeCCeEE-EEEEeCcEEEEE
Q 031317            2 IHFVLLISRQGKVRLTKWYSPYT----QKERSKVIRELSGV--ILT-RGP--KLCN--FVEWRGYKV-VYKRYASLYFCM   69 (161)
Q Consensus         2 I~al~Iln~~G~~~l~K~Y~~~~----~~~~~~~~~~i~~~--i~~-r~~--~~~~--i~~~~~~~~-vy~~~~~L~f~~   69 (161)
                      +.+++|+|+.|-.++.|-|....    ..|-.-+...++..  +.+ ...  ..++  ++..+.... +|+...++-|++
T Consensus         3 ve~~~iINksGglifqref~~~et~lnsneyLiLastlhgV~aI~tq~~p~~gssg~~~l~~~~f~m~I~qT~TG~kFV~   82 (134)
T COG5122           3 VEQFFIINKSGGLIFQREFGEGETELNSNEYLILASTLHGVSAILTQTIPLPGSSGRLVLYFRNFVMTIFQTTTGTKFVF   82 (134)
T ss_pred             eeEEEEEecCCcEEEEEeccCCccccCcccEEEEeechhhhhhhhhhcccCCCCCceEEEEeccEEEEEEEecCCcEEEE
Confidence            68999999999999999985421    11110011222211  111 111  1122  445666554 899999999999


Q ss_pred             Ee-cCCCCHHHHHHHHHHHHHHHHHHh
Q 031317           70 CV-DQEDNELEILEIIHHYVEILDRYF   95 (161)
Q Consensus        70 v~-~~neNel~i~efL~~~ve~L~~yf   95 (161)
                      ++ +.-.|.++-   ++.+.....+|-
T Consensus        83 ~~~k~t~na~~q---l~kiY~lYsdYV  106 (134)
T COG5122          83 VAEKRTVNALFQ---LQKIYSLYSDYV  106 (134)
T ss_pred             EecCCchhHHHH---HHHHHHHHHHHh
Confidence            99 666776655   566777777765

>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=83.23  E-value=24  Score=32.54  Aligned_cols=113  Identities=14%  Similarity=0.178  Sum_probs=70.6

Q ss_pred             CeEEEEEEcCCCCeEEEecCCCCCHHHHHHHHHHHHHH-HhccCCCccceEEeCCeEEEEEEeCc--EEEEEEecCCCCH
Q 031317            1 MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGV-ILTRGPKLCNFVEWRGYKVVYKRYAS--LYFCMCVDQEDNE   77 (161)
Q Consensus         1 MI~al~Iln~~G~~~l~K~Y~~~~~~~~~~~~~~i~~~-i~~r~~~~~~i~~~~~~~~vy~~~~~--L~f~~v~~~neNe   77 (161)
                      ||-.+.|+++.|.++...-=-+.+.++   ....+++. ++.+.+...+ +.++.+++=|...++  +.|+++-..--+=
T Consensus         1 Mld~faIFtkgG~vLw~~~~~~~~~~~---~in~lI~~~ll~er~~~~~-~~~~~yTlk~q~~N~~~lvfvvvfqki~~L   76 (587)
T KOG0781|consen    1 MLDQFAIFTKGGLVLWCYQEVGDNLKG---PINALIRSVLLSERGGVNS-FTFEAYTLKYQLDNQYSLVFVVVFQKILTL   76 (587)
T ss_pred             CcceeeeecCCcEEEEEecccchhccc---hHHHHHHHHHHHhhcCccc-CchhheeEeeeecCCccEEEEEEEeccchh
Confidence            899999999999877654322233222   23444444 3333333333 677889888877665  5566666555555


Q ss_pred             HHHHHHHHHHHHHHHHHhcccchhhHHhh-HHHHHHHHHHH
Q 031317           78 LEILEIIHHYVEILDRYFGSVCELDLIFN-FHKAYYILDEI  117 (161)
Q Consensus        78 l~i~efL~~~ve~L~~yfg~v~E~~i~~N-f~~vy~lLDEm  117 (161)
                      ..+-.+|....+.+..-|...+-..+.-| ++...++|++-
T Consensus        77 ~yv~~ll~~v~~~f~e~~~~~~~~~l~~n~~~~~~e~lk~r  117 (587)
T KOG0781|consen   77 TYVDKLLNDVLNLFREKYDTQSALSLLNNTFDFQEELLKLR  117 (587)
T ss_pred             hhHHHHHHHHHHHHHHHhccchHHHhhhhhHHHHHHHHHHh
Confidence            55666887777777777766555666666 55677777643

>KOG0997 consensus Uncharacterized conserved protein Sand [Function unknown]

Probab=82.88  E-value=18  Score=33.00  Aligned_cols=72  Identities=15%  Similarity=0.206  Sum_probs=48.7

Q ss_pred             EEEEEcCCCCeEEEecCCCC----CHHHHHHHHHHHHHHHhccCCCccceEEeCCeEEEEEEeCcEEEEEEecCCCCHHH
Q 031317            4 FVLLISRQGKVRLTKWYSPY----TQKERSKVIRELSGVILTRGPKLCNFVEWRGYKVVYKRYASLYFCMCVDQEDNELE   79 (161)
Q Consensus         4 al~Iln~~G~~~l~K~Y~~~----~~~~~~~~~~~i~~~i~~r~~~~~~i~~~~~~~~vy~~~~~L~f~~v~~~neNel~   79 (161)
                      -+||+...|++++++|=...    +..-.++++..+.    .....-+ .+...|+++++-+.+-|+++|++..+.++--
T Consensus       119 hifilseaGKPiyS~~gs~e~l~stmGv~~alISf~q----~~~~~i~-si~a~g~k~vfl~kspl~LvA~s~t~~Sa~q  193 (523)
T KOG0997|consen  119 HIFILSEAGKPIYSRHGSDEALSSTMGVMQALISFFQ----VSGLAIT-SIHAFGNKLVFLQKSPLLLVAVSRTSQSAAQ  193 (523)
T ss_pred             eEEEEecCCCceeeecCcHHHHHHHHHHHHHHHHHHh----hCCceEE-EEEecCceEEEEecCcEEEEEEcccccCHHH
Confidence            48999999999999985431    1222233333322    1112223 3457899999999999999999998887654


Q ss_pred             H
Q 031317           80 I   80 (161)
Q Consensus        80 i   80 (161)
                      +
T Consensus       194 L  194 (523)
T KOG0997|consen  194 L  194 (523)
T ss_pred             H
Confidence            3

>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT)

Probab=80.21  E-value=5.5  Score=30.85  Aligned_cols=58  Identities=24%  Similarity=0.241  Sum_probs=44.1

Q ss_pred             HHHHHHHHhcccchhhHHhhHHHHHHHHHHHHhCcEeeec------CHHHHHHHHHhhhhhHHh
Q 031317           87 YVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGELQES------SKKTVARLIAAQDSLVET  144 (161)
Q Consensus        87 ~ve~L~~yfg~v~E~~i~~Nf~~vy~lLDEmid~G~~~eT------~~~~i~~~i~~~~~~~~~  144 (161)
                      +-+.|+++++.+++++..+...-.-+.+||-..+|..-+-      +|+.+.+.+....+..+.
T Consensus         6 fL~~L~~~L~~lp~~e~~e~l~~Y~e~f~d~~~~G~sEeeii~~LG~P~~iA~~i~~~~~i~~~   69 (181)
T PF08006_consen    6 FLNELEKYLKKLPEEEREEILEYYEEYFDDAGEEGKSEEEIIAELGSPKEIAREILAEYSIKEE   69 (181)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHcCCHHHHHHHHHHhhhhhhh
Confidence            4566788888899999999999999999998888864443      777788887766554433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	161
1w63_Q	158	Ap1 Clathrin Adaptor Core Length = 158		2e-50
2vgl_S	142	Ap2 Clathrin Adaptor Core Length = 142		1e-39
2bp5_M	435	Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second D		9e-05
2xa7_M	446	Ap2 Clathrin Adaptor Core In Active Complex With Ca		1e-04

>pdb|1W63|Q Chain Q, Ap1 Clathrin Adaptor Core Length = 158

Iteration: 1
 Score =  194 bits (493), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 89/155 (57%), Positives = 117/155 (75%)
Query: 1   MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTRGPKLCNFVEWRGYKVVYK 60
           M+ F+LL SRQGK+RL KWY   + KER K++REL  V+L R PK+C+F+EWR  KVVYK
Sbjct: 1   MMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYK 60
Query: 61  RYASLYFCMCVDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIA 120
           RYASLYFC  ++ +DNEL  LE+IH YVE+LD+YFGSVCELD+IFNF KAY+ILDE L+ 
Sbjct: 61  RYASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMG 120
Query: 121 GELQESSKKTVARLIAAQDSLVETAKEQASSISNI 155
           G++Q++SKK+V + I   D L E  +   S +  +
Sbjct: 121 GDVQDTSKKSVLKAIEQADLLQEEDESPRSVLEEM 155

>pdb|2VGL|S Chain S, Ap2 Clathrin Adaptor Core Length = 142

Iteration: 1
 Score =  158 bits (400), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 69/141 (48%), Positives = 100/141 (70%)
Query: 1   MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTRGPKLCNFVEWRGYKVVYK 60
           MI F+L+ +R GK RL KWY  +   E+ K+I E+  V+  R  K  NFVE+R +K++Y+
Sbjct: 1   MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYR 60
Query: 61  RYASLYFCMCVDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIA 120
           RYA LYFC+CVD  DN L  LE IH++VE+L+ YF +VCELDL+FNF+K Y ++DE+ +A
Sbjct: 61  RYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLA 120
Query: 121 GELQESSKKTVARLIAAQDSL 141
           GE++E+S+  V + +    SL
Sbjct: 121 GEIRETSQTKVLKQLLMLQSL 141

>pdb|2BP5|M Chain M, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain), Complexed With Non-Canonical Internalization Peptide Vedyeqglsg Length = 435

Iteration: 1
 Score = 42.7 bits (99), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 2/100 (2%)
Query: 61  RYASLYFCMCVDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIA 120
           + ++++      Q  N   + E ++   +++  YFG + E ++  NF   Y +LDEIL  
Sbjct: 59  KRSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDF 118
Query: 121 GELQESSKKTVARLIAAQD--SLVETAKEQASSISNIIAQ 158
           G  Q S    +   I  Q   S  +T +EQ+   S +  Q
Sbjct: 119 GYPQNSETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQ 158

>pdb|2XA7|M Chain M, Ap2 Clathrin Adaptor Core In Active Complex With Cargo Peptides Length = 446

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 2/100 (2%)
Query: 61  RYASLYFCMCVDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIA 120
           + ++++      Q  N   + E ++   +++  YFG + E ++  NF   Y +LDEIL  
Sbjct: 59  KRSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDF 118
Query: 121 GELQESSKKTVARLIAAQD--SLVETAKEQASSISNIIAQ 158
           G  Q S    +   I  Q   S  +T +EQ+   S +  Q
Sbjct: 119 GYPQNSETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQ 158

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	161
1w63_Q	158	Adapter-related protein complex 1 sigma 1A subunit	2e-53
2vgl_S	142	AP-2 complex subunit sigma-1; cytoplasmic vesicle,	3e-51
3tjz_C	153	Coatomer subunit zeta-1; protein trafficking, golg	4e-43
2vgl_M	435	AP-2 complex subunit MU-1; cytoplasmic vesicle, al	2e-21
1w63_M	423	Adaptor-related protein complex 1, MU 1 subunit; e	4e-11

>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Length = 158

 Score =  165 bits (419), Expect = 2e-53
 Identities = 89/155 (57%), Positives = 117/155 (75%)

Query: 1   MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTRGPKLCNFVEWRGYKVVYK 60
           M+ F+LL SRQGK+RL KWY   + KER K++REL  V+L R PK+C+F+EWR  KVVYK
Sbjct: 1   MMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYK 60

Query: 61  RYASLYFCMCVDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIA 120
           RYASLYFC  ++ +DNEL  LE+IH YVE+LD+YFGSVCELD+IFNF KAY+ILDE L+ 
Sbjct: 61  RYASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMG 120

Query: 121 GELQESSKKTVARLIAAQDSLVETAKEQASSISNI 155
           G++Q++SKK+V + I   D L E  +   S +  +
Sbjct: 121 GDVQDTSKKSVLKAIEQADLLQEEDESPRSVLEEM 155

>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S Length = 142

 Score =  159 bits (403), Expect = 3e-51
 Identities = 69/141 (48%), Positives = 100/141 (70%)

Query: 1   MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTRGPKLCNFVEWRGYKVVYK 60
           MI F+L+ +R GK RL KWY  +   E+ K+I E+  V+  R  K  NFVE+R +K++Y+
Sbjct: 1   MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYR 60

Query: 61  RYASLYFCMCVDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIA 120
           RYA LYFC+CVD  DN L  LE IH++VE+L+ YF +VCELDL+FNF+K Y ++DE+ +A
Sbjct: 61  RYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLA 120

Query: 121 GELQESSKKTVARLIAAQDSL 141
           GE++E+S+  V + +    SL
Sbjct: 121 GEIRETSQTKVLKQLLMLQSL 141

>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A Length = 153

 Score =  139 bits (351), Expect = 4e-43
 Identities = 31/142 (21%), Positives = 60/142 (42%), Gaps = 6/142 (4%)

Query: 1   MIHFVLLISRQGKVRLTKWYSP--YTQKERSKVIRELSGVILTRGPKLCNFVEWRGYKVV 58
            +  +L++   G     K+Y     + KE+    + +      R       +E  G  VV
Sbjct: 12  TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKT-HRTDSEIALLE--GLTVV 68

Query: 59  YKRYASLYFCMCVDQEDNELEILEIIHHYVEILDRYF-GSVCELDLIFNFHKAYYILDEI 117
           YK    LYF +     +NEL ++ +++   + L +    +V +  L+ N    +  +DEI
Sbjct: 69  YKSSIDLYFYVIGSSYENELMLMTVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDEI 128

Query: 118 LIAGELQESSKKTVARLIAAQD 139
           +  G + ES  + V   +A + 
Sbjct: 129 VDGGVILESDPQQVVHRVALRG 150

>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M Length = 435

 Score = 88.5 bits (218), Expect = 2e-21
 Identities = 30/148 (20%), Positives = 59/148 (39%), Gaps = 2/148 (1%)

Query: 1   MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTRGPKLCNFVEWRGYKVVYK 60
           MI  + + + +G+V +++ Y       R+ V      VI  R                + 
Sbjct: 1   MIGGLFIYNHKGEVLISRVYRD--DIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHV 58

Query: 61  RYASLYFCMCVDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIA 120
           + ++++      Q  N   + E ++   +++  YFG + E ++  NF   Y +LDEIL  
Sbjct: 59  KRSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDF 118

Query: 121 GELQESSKKTVARLIAAQDSLVETAKEQ 148
           G  Q S    +   I  Q    +   ++
Sbjct: 119 GYPQNSETGALKTFITQQGIKSQHQTKE 146

>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Length = 423

 Score = 59.2 bits (142), Expect = 4e-11
 Identities = 25/144 (17%), Positives = 56/144 (38%), Gaps = 1/144 (0%)

Query: 5   VLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTRGPKLCNFVEWRGYKVVYKRYAS 64
           V ++  +GKV + + Y         +    +  +       L   +   G + ++ ++ +
Sbjct: 6   VYVLDLKGKVLICRNYRGDVDMSEVEHFMPIL-MEKEEEGMLSPILAHGGVRFMWIKHNN 64

Query: 65  LYFCMCVDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGELQ 124
           LY      +      +   ++  V++   YF  + E  +  NF   Y +LDE++  G  Q
Sbjct: 65  LYLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDFGYPQ 124

Query: 125 ESSKKTVARLIAAQDSLVETAKEQ 148
            +  K +   I  +   +ET   +
Sbjct: 125 TTDSKILQEFITQEGHKLETGAPR 148

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	161
1w63_Q	158	Adapter-related protein complex 1 sigma 1A subunit	100.0
2vgl_S	142	AP-2 complex subunit sigma-1; cytoplasmic vesicle,	100.0
3tjz_C	153	Coatomer subunit zeta-1; protein trafficking, golg	100.0
2vgl_M	435	AP-2 complex subunit MU-1; cytoplasmic vesicle, al	100.0
1w63_M	423	Adaptor-related protein complex 1, MU 1 subunit; e	100.0
2nut_C	196	Vesicle-trafficking protein SEC22B; human copii SE	96.95
4b93_A	189	Vesicle-associated membrane protein 7; endocytosis	95.48
3bw6_A	144	Synaptobrevin homolog YKT6; YKT6P, farnesylation,	95.44
2vx8_A	169	Nucleoporin-like protein RIP, vesicle-associated m	95.37
3kyq_A	199	YKT6, synaptobrevin homolog YKT6; V-snare homolog,	94.77
3cpt_A	143	Mitogen-activated protein kinase kinase 1- interac	94.76
4afi_A	173	AP-3 complex subunit delta-1, vesicle-associated p	94.71
2j3t_C	145	Trafficking protein particle complex subunit 1, tr	94.14
3cue_C	159	Transport protein particle 18 kDa subunit; membran	87.25
3cue_A	219	Transport protein particle 23 kDa subunit; membran	84.02
2j3w_A	142	Sedlin, trafficking protein particle complex prote	81.95

>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=100.00  E-value=4e-46  Score=286.50  Aligned_cols=146  Identities=60%  Similarity=1.097  Sum_probs=140.5

Q ss_pred             CeEEEEEEcCCCCeEEEecCCCCCHHHHHHHHHHHHHHHhccCCCccceEEeCCeEEEEEEeCcEEEEEEecCCCCHHHH
Q 031317            1 MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTRGPKLCNFVEWRGYKVVYKRYASLYFCMCVDQEDNELEI   80 (161)
Q Consensus         1 MI~al~Iln~~G~~~l~K~Y~~~~~~~~~~~~~~i~~~i~~r~~~~~~i~~~~~~~~vy~~~~~L~f~~v~~~neNel~i   80 (161)
                      ||+|+||+|++|++|++|||++.+.++|+++++.+++++.+|++++|||+++++++++|+++++|||+++++.++|||++
T Consensus         1 MI~~i~Il~~~Gk~~lsk~y~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~vy~~~~~Lyfv~~~~~~~Nel~~   80 (158)
T 1w63_Q            1 MMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYKRYASLYFCCAIEGQDNELIT   80 (158)
T ss_dssp             CEEEEEEECSSSCEEEEEESSCCCHHHHHHHHHHHHHHHHTSCSSSCSEEEETTEEEEEEEETTEEEEEEECSSSCHHHH
T ss_pred             CeEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHhccCCCCCCeEEECCEEEEEEEECCEEEEEEecCCCCHHHH
Confidence            99999999999999999999999998899999999999988877789999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcccchhhHHhhHHHHHHHHHHHHhCcEeeecCHHHHHHHHHhhhhhHHhhh
Q 031317           81 LEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGELQESSKKTVARLIAAQDSLVETAK  146 (161)
Q Consensus        81 ~efL~~~ve~L~~yfg~v~E~~i~~Nf~~vy~lLDEmid~G~~~eT~~~~i~~~i~~~~~~~~~~~  146 (161)
                      ++|||+++++|++|||++||++|++||++||++||||+|+|+|++|+++.|++++..++.+.++..
T Consensus        81 le~L~~~vevl~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~eT~~~~l~~~I~~~~~l~~~~~  146 (158)
T 1w63_Q           81 LELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMGGDVQDTSKKSVLKAIEQADLLQEEDE  146 (158)
T ss_dssp             HHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHTTEETTEESCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccCCHHHHHHhHHHHHHHHHHHHhCCEEEecCHHHHHHHHhcchhhhhhhc
Confidence            999999999999999999999999999999999999999999999999999999999998876543

>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S

Probab=100.00  E-value=4.6e-45  Score=275.56  Aligned_cols=141  Identities=49%  Similarity=0.973  Sum_probs=135.4

Q ss_pred             CeEEEEEEcCCCCeEEEecCCCCCHHHHHHHHHHHHHHHhccCCCccceEEeCCeEEEEEEeCcEEEEEEecCCCCHHHH
Q 031317            1 MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTRGPKLCNFVEWRGYKVVYKRYASLYFCMCVDQEDNELEI   80 (161)
Q Consensus         1 MI~al~Iln~~G~~~l~K~Y~~~~~~~~~~~~~~i~~~i~~r~~~~~~i~~~~~~~~vy~~~~~L~f~~v~~~neNel~i   80 (161)
                      ||+|++|+|++|+++++|||++++..+++++++.+++.+.++++++|||+++++++++|+++++|||+++++.++|||++
T Consensus         1 MI~~i~i~~~~Gk~~l~k~y~~~~~~~~~~~~~~f~~~v~~~~~~~~~~~~~~~~~~vy~~~~~Lyfv~~~~~~~N~l~~   80 (142)
T 2vgl_S            1 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYRRYAGLYFCICVDVNDNNLAY   80 (142)
T ss_dssp             CEEEEEEEETTSCEEEEEECSCCCHHHHHHHHHHHHHHHHTCCTTSCSEEEETTEEEEEEEETTEEEEEEECTTSCHHHH
T ss_pred             CeEEEEEEcCCCCEEEEEeCCCCChhhhHHHHHHHHHHHhcCCCCCCCEEEECCEEEEEEEECCEEEEEEeCCCCCHHHH
Confidence            99999999999999999999998888888999999999888777799999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcccchhhHHhhHHHHHHHHHHHHhCcEeeecCHHHHHHHHHhhhhh
Q 031317           81 LEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGELQESSKKTVARLIAAQDSL  141 (161)
Q Consensus        81 ~efL~~~ve~L~~yfg~v~E~~i~~Nf~~vy~lLDEmid~G~~~eT~~~~i~~~i~~~~~~  141 (161)
                      ++|||+++++|++|||++||++|++||++||++||||+|+|+|++|++..+++++..++++
T Consensus        81 le~L~~~ve~l~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~et~~~~il~~~~~~~~~  141 (142)
T 2vgl_S           81 LEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRETSQTKVLKQLLMLQSL  141 (142)
T ss_dssp             HHHHHHHHHHHHHHTTSCCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHhCCEEEEcCHHHHHHHHHhhhcc
Confidence            9999999999999999999999999999999999999999999999988899999988764

>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A

Probab=100.00  E-value=1.8e-45  Score=282.02  Aligned_cols=135  Identities=22%  Similarity=0.377  Sum_probs=126.4

Q ss_pred             CeEEEEEEcCCCCeEEEecCCC--CCHHHHHHHHHHHHHHHhccCCCccceEEeCCeEEEEEEeCcEEEEEEecCCCCHH
Q 031317            1 MIHFVLLISRQGKVRLTKWYSP--YTQKERSKVIRELSGVILTRGPKLCNFVEWRGYKVVYKRYASLYFCMCVDQEDNEL   78 (161)
Q Consensus         1 MI~al~Iln~~G~~~l~K~Y~~--~~~~~~~~~~~~i~~~i~~r~~~~~~i~~~~~~~~vy~~~~~L~f~~v~~~neNel   78 (161)
                      ||+|++|+|++|++|++|||++  ++.++|+++++++|+++ +|++  +|++.++|++++||||++|||++++++|+||+
T Consensus        12 mI~~ililn~~Gk~~lsK~Y~~~~~~~~~~~~~e~~i~~~~-~r~~--~~i~~~~~~~~vy~~~~~Lyfv~~~~~~eNel   88 (153)
T 3tjz_C           12 TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKT-HRTD--SEIALLEGLTVVYKSSIDLYFYVIGSSYENEL   88 (153)
T ss_dssp             CEEEEEEECTTSCEEEEEECSSSSCSHHHHHHHHHHHHHHH-SSCC--CCEEEETTEEEEEEECSSCEEEEEEETTSCHH
T ss_pred             HheEEEEECCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCC--CCEEEECCEEEEEEEECCEEEEEEEcCCCChH
Confidence            8999999999999999999998  57788889999999997 4433  89999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHh-cccchhhHHhhHHHHHHHHHHHHhCcEeeecCHHHHHHHHHhh
Q 031317           79 EILEIIHHYVEILDRYF-GSVCELDLIFNFHKAYYILDEILIAGELQESSKKTVARLIAAQ  138 (161)
Q Consensus        79 ~i~efL~~~ve~L~~yf-g~v~E~~i~~Nf~~vy~lLDEmid~G~~~eT~~~~i~~~i~~~  138 (161)
                      ++++|||+++++|++|| |++||++|++||++||++||||+|+|+|||||++.|+++++..
T Consensus        89 ~ile~L~~~ve~l~~yf~~~v~E~~I~~Nf~~vy~lLDE~id~G~~~eT~~~~I~~~v~~~  149 (153)
T 3tjz_C           89 MLMTVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDEIVDGGVILESDPQQVVHRVALR  149 (153)
T ss_dssp             HHHHHHHHHHHHHHHHHTSCCCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHHHTC---
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHcCCEeeeCCHHHHHHHHhcc
Confidence            99999999999999999 8999999999999999999999999999999999999998764

>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M

Probab=100.00  E-value=2.6e-35  Score=256.56  Aligned_cols=134  Identities=18%  Similarity=0.301  Sum_probs=118.9

Q ss_pred             CeEEEEEEcCCCCeEEEecCCCCCHHHHHHHHHHHHHHHhcc-CCCccceEEeCCeEEEEEEeCcEEEEEEecCCCCHHH
Q 031317            1 MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTR-GPKLCNFVEWRGYKVVYKRYASLYFCMCVDQEDNELE   79 (161)
Q Consensus         1 MI~al~Iln~~G~~~l~K~Y~~~~~~~~~~~~~~i~~~i~~r-~~~~~~i~~~~~~~~vy~~~~~L~f~~v~~~neNel~   79 (161)
                      ||+|+||+|++|+++++|||++...+   ...+.+++.+.++ +..+||++++++++++|+++++|||+++++.|+|||+
T Consensus         1 MI~~i~I~~~~Gk~~l~k~y~~~~~~---~~~~~f~~~v~~~~~~~~~~ii~~~~~~~vy~~~~~Lyfv~~~~~~~n~l~   77 (435)
T 2vgl_M            1 MIGGLFIYNHKGEVLISRVYRDDIGR---NAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKRSNIWLAAVTKQNVNAAM   77 (435)
T ss_dssp             CCCEEEEECTTCCEEEEEECSSSCCH---HHHHHHHHHTTTCSSCCCCSEEEETTEEEEEEEETTEEEEEEESSCCCHHH
T ss_pred             CeEEEEEECCCCCEEEEEecCCCCCh---hHHHHHHHHHhccccCCCCCEEEECCEEEEEEEECCEEEEEEecCCCCHHH
Confidence            99999999999999999999984332   2244555666553 3468999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcccchhhHHhhHHHHHHHHHHHHhCcEeeecCHHHHHHHHHh
Q 031317           80 ILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGELQESSKKTVARLIAA  137 (161)
Q Consensus        80 i~efL~~~ve~L~~yfg~v~E~~i~~Nf~~vy~lLDEmid~G~~~eT~~~~i~~~i~~  137 (161)
                      ++||||+++++|++|||++||++|++||++||++||||+|+|+|++|+++.|..++..
T Consensus        78 ~le~L~~~v~vl~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~~t~~~~l~~~i~~  135 (435)
T 2vgl_M           78 VFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGYPQNSETGALKTFITQ  135 (435)
T ss_dssp             HHHHHHHHHHHHHHHHSSCCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHGGGCCC
T ss_pred             HHHHHHHHHHHHHHHHhccCHHHHHHhHHHHHHHHHHHhcCCEEEecCHHHHHHHhcc
Confidence            9999999999999999999999999999999999999999999999999966555443

>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=100.00  E-value=2.5e-35  Score=255.89  Aligned_cols=136  Identities=17%  Similarity=0.300  Sum_probs=121.8

Q ss_pred             CeEEEEEEcCCCCeEEEecCCCCCHHHHHHHHHHHHHHHhcc-C-CCccceEEeCCeEEEEEEeCcEEEEEEecCCCCHH
Q 031317            1 MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTR-G-PKLCNFVEWRGYKVVYKRYASLYFCMCVDQEDNEL   78 (161)
Q Consensus         1 MI~al~Iln~~G~~~l~K~Y~~~~~~~~~~~~~~i~~~i~~r-~-~~~~~i~~~~~~~~vy~~~~~L~f~~v~~~neNel   78 (161)
                      ||+|++|+|++|+++++|||++...+   ...+.+++.+.++ + ..+||++++++++++|+++++|||+++++.|+|||
T Consensus         2 MI~~i~I~~~~Gk~~l~k~y~~~~~~---~~~~~f~~~v~~~~~~~~~~~~i~~~~~~~vy~~~~~Lyfv~~~~~~~n~l   78 (423)
T 1w63_M            2 SASAVYVLDLKGKVLICRNYRGDVDM---SEVEHFMPILMEKEEEGMLSPILAHGGVRFMWIKHNNLYLVATSKKNACVS   78 (423)
T ss_dssp             CCCEEEEEETTTEECSCBCCSCSCTT---TTHHHHHHHHHHHHHTSCCCSEEEETTEEEEEEEETTEEEEEEESSCCCTH
T ss_pred             ceEEEEEECCCCCEEEEEecCCCCCh---HHHHHHHHHHhhccccCCCCCEEEECCEEEEEEEECCEEEEEEecCCCCHH
Confidence            89999999999999999999984332   2345556666554 2 45899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcccchhhHHhhHHHHHHHHHHHHhCcEeeecCHHHHHHHHHhhh
Q 031317           79 EILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGELQESSKKTVARLIAAQD  139 (161)
Q Consensus        79 ~i~efL~~~ve~L~~yfg~v~E~~i~~Nf~~vy~lLDEmid~G~~~eT~~~~i~~~i~~~~  139 (161)
                      +++||||+++++|++|||++||++|++||++||++||||+|+|+|++|+++.|++++....
T Consensus        79 ~~le~L~~~v~~l~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~~t~~~~l~~~i~~~~  139 (423)
T 1w63_M           79 LVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDFGYPQTTDSKILQEFITQEG  139 (423)
T ss_dssp             HHHHHHHHHHHHHHHHSSCCSHHHHHHHHHHHHHHHHHHCSSSSCCCCCSTTTTTTCCSCC
T ss_pred             HHHHHHHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHHHhcCCEEeecCHHHHHHhhcCCC
Confidence            9999999999999999999999999999999999999999999999999998888877643

>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A

Probab=96.95  E-value=0.019  Score=44.32  Aligned_cols=96  Identities=9%  Similarity=0.122  Sum_probs=66.8

Q ss_pred             CeEEEEEEcCCCCeEEEecCCCCC-----HHHHHHHHHHHHHHHhccCCCccceEEeCCeEEEEEEeCcEEEEEEecCCC
Q 031317            1 MIHFVLLISRQGKVRLTKWYSPYT-----QKERSKVIRELSGVILTRGPKLCNFVEWRGYKVVYKRYASLYFCMCVDQED   75 (161)
Q Consensus         1 MI~al~Iln~~G~~~l~K~Y~~~~-----~~~~~~~~~~i~~~i~~r~~~~~~i~~~~~~~~vy~~~~~L~f~~v~~~ne   75 (161)
                      ||..-+|.-...-+.|+.++...+     ..+-+.+...+.+++....+... .+..+++.+.|...+++.++++++.+-
T Consensus         2 Mi~ya~IaR~~d~~iLa~~~d~~~~~~~~~~~~~~~a~~il~ki~~~~~~r~-s~~~~~y~fhy~~~~gl~~l~i~d~~y   80 (196)
T 2nut_C            2 MVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNEQSPTRC-TLEAGAMTFHYIIEQGVCYLVLCEAAF   80 (196)
T ss_dssp             CCCCEEEEETTTCCEEEEECCCC-----CHHHHHHHHHHHHHHCCTTSCSEE-EEEETTEEEEEEEETTEEEEEEEETTS
T ss_pred             ceEEEEEEEcCCCcEEEEeecccccccccHHHHHHHHHHHHHhcCCCCCCeE-EEEeCCEEEEEEeCCCeEEEEEEcCCc
Confidence            666666654433566677766321     12233455555555533223333 346799999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHHHhcc
Q 031317           76 NELEILEIIHHYVEILDRYFGS   97 (161)
Q Consensus        76 Nel~i~efL~~~ve~L~~yfg~   97 (161)
                      +.-..+.||..+.+-+..-+|.
T Consensus        81 p~r~af~fL~~i~~~F~~~~~~  102 (196)
T 2nut_C           81 PKKLAFAYLEDLHSEFDEQHGK  102 (196)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTT
T ss_pred             chHHHHHHHHHHHHHHHHhccc
Confidence            9999999999999888876664

>4b93_A Vesicle-associated membrane protein 7; endocytosis, exocytosis, snare; 2.00A {Mus musculus} PDB: 2dmw_A

Probab=95.48  E-value=0.076  Score=40.83  Aligned_cols=84  Identities=12%  Similarity=0.106  Sum_probs=60.5

Q ss_pred             CCCCeEEEecCCCCCHHHHHHHHHHHHHHHhccCCCccceEEeCCeEEEEEEeCcEEEEEEecCCCCHHHHHHHHHHHHH
Q 031317           10 RQGKVRLTKWYSPYTQKERSKVIRELSGVILTRGPKLCNFVEWRGYKVVYKRYASLYFCMCVDQEDNELEILEIIHHYVE   89 (161)
Q Consensus        10 ~~G~~~l~K~Y~~~~~~~~~~~~~~i~~~i~~r~~~~~~i~~~~~~~~vy~~~~~L~f~~v~~~neNel~i~efL~~~ve   89 (161)
                      .+|.++|+.|=.. +. .-..+...+..++.. ++..+ .+.++++.|.|....++.++++++.+-+.-..+.||..+.+
T Consensus        10 Arg~~iLae~t~~-~g-nf~~ia~~iL~kip~-~~~k~-s~~~~~y~fHyl~~~gl~yl~i~d~~yp~r~af~fL~~i~~   85 (189)
T 4b93_A           10 ARGTTILAKHAWC-GG-NFLEVTEQILAKIPS-ENNKL-TYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLNEVKK   85 (189)
T ss_dssp             EETTEEEEEEESS-EE-CHHHHHHHHHTTCCS-SSEEE-EEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHHHHHHH
T ss_pred             EeCCEEEEeCCCC-CC-CHHHHHHHHHHhCCC-CCCeE-EEEECCEEEEEEEeCCeEEEEEEcCccCHHHHHHHHHHHHH
Confidence            4699999997332 11 112334444433321 12222 45789999999999999999999999999999999999999


Q ss_pred             HHHHHhcc
Q 031317           90 ILDRYFGS   97 (161)
Q Consensus        90 ~L~~yfg~   97 (161)
                      -+..-+|.
T Consensus        86 eF~~~~~~   93 (189)
T 4b93_A           86 RFQTTYGS   93 (189)
T ss_dssp             HHHHHHGG
T ss_pred             HHHhhccc
Confidence            88877765

>3bw6_A Synaptobrevin homolog YKT6; YKT6P, farnesylation, vacuole fusion, snare, coiled coil, lipoprotein, membrane, phosphoprotein; 2.50A {Saccharomyces cerevisiae} PDB: 1h8m_A 1iou_A

Probab=95.44  E-value=0.48  Score=34.72  Aligned_cols=95  Identities=9%  Similarity=0.079  Sum_probs=65.1

Q ss_pred             eEEEEEEcCCC--CeEEEecCCC--CC---HHHHHHHHHHHHHHHhccCC--CccceEEeCCeEEEEE-EeCcEEEEEEe
Q 031317            2 IHFVLLISRQG--KVRLTKWYSP--YT---QKERSKVIRELSGVILTRGP--KLCNFVEWRGYKVVYK-RYASLYFCMCV   71 (161)
Q Consensus         2 I~al~Iln~~G--~~~l~K~Y~~--~~---~~~~~~~~~~i~~~i~~r~~--~~~~i~~~~~~~~vy~-~~~~L~f~~v~   71 (161)
                      |-++.|+-..+  -++|+..++-  .+   ....+++...+-+.+..|..  ..+ -++.+++.+.|. +.++|.+++++
T Consensus         7 l~~~~v~r~~~~~~~~L~~~~d~s~f~ffqr~sv~ef~~~~ar~i~~r~~~~~R~-sv~~~~y~fH~~~~~~gl~~l~i~   85 (144)
T 3bw6_A            7 IYYIGVFRSGGEKALELSEVKDLSQFGFFERSSVGQFMTFFAETVASRTGAGQRQ-SIEEGNYIGHVYARSEGICGVLIT   85 (144)
T ss_dssp             EEEEEEEECCSSSCEEEEEEECCTTSCTTTTTHHHHHHHHHHHHHHHHCCTTEEE-EEEETTEEEEEEECTTSEEEEEEE
T ss_pred             EEEEEEEecCCCCCeEeEeeecccccChhhhhhHHHHHHHHHHHHHhhCCCCceE-EEEeCCEEEEEEEecCCEEEEEEE
Confidence            45665554332  4567776653  11   11224455555566665542  233 346799999888 88999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHHHHHHhcc
Q 031317           72 DQEDNELEILEIIHHYVEILDRYFGS   97 (161)
Q Consensus        72 ~~neNel~i~efL~~~ve~L~~yfg~   97 (161)
                      |.+-+.-..+.||..+.+-+..-+|.
T Consensus        86 D~~yp~rvAF~~L~~i~~eF~~~y~~  111 (144)
T 3bw6_A           86 DKEYPVRPAYTLLNKILDEYLVAHPK  111 (144)
T ss_dssp             ETTSCHHHHHHHHHHHHHHHHHHSCG
T ss_pred             CCCCChhHHHHHHHHHHHHHHHHccc
Confidence            99999999999999888888776664

>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein 7; endocytosis,exocytosis, endocytosis, exocytosis, acetylation, coiled coil; 2.2A {Homo sapiens} PDB: 2dmw_A

Probab=95.37  E-value=0.11  Score=39.48  Aligned_cols=84  Identities=12%  Similarity=0.116  Sum_probs=62.1

Q ss_pred             CCCCeEEEecCCCCCHHHHHHHHHHHHHHHhccCCCccceEEeCCeEEEEEEeCcEEEEEEecCCCCHHHHHHHHHHHHH
Q 031317           10 RQGKVRLTKWYSPYTQKERSKVIRELSGVILTRGPKLCNFVEWRGYKVVYKRYASLYFCMCVDQEDNELEILEIIHHYVE   89 (161)
Q Consensus        10 ~~G~~~l~K~Y~~~~~~~~~~~~~~i~~~i~~r~~~~~~i~~~~~~~~vy~~~~~L~f~~v~~~neNel~i~efL~~~ve   89 (161)
                      .+|.++|+.|-.. +. .-+.+.+.+.+++..++ ..+ -+..+++.+-|...++|.|+++++.+-.--..+.||..+.+
T Consensus        52 aRG~~VLae~t~~-~g-nf~~iak~ll~kl~~~~-~r~-s~~~~~y~fHyl~~ngl~yl~I~D~~yp~r~AF~fLedI~~  127 (169)
T 2vx8_A           52 ARGTTILAKHAWC-GG-NFLEVTEQILAKIPSEN-NKL-TYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLNEVKK  127 (169)
T ss_dssp             EETTEEEEEEESS-CB-SHHHHHHHHHTTSCSSC-EEE-EEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHHHHHHH
T ss_pred             EcCCEEEEEeccC-CC-CHHHHHHHHHhhCCCCC-Cce-EEEECCEEEEEEEECCEEEEEEEccccchHHHHHHHHHHHH
Confidence            4578999986432 11 22344555555543322 223 35679999999999999999999999999999999999999


Q ss_pred             HHHHHhcc
Q 031317           90 ILDRYFGS   97 (161)
Q Consensus        90 ~L~~yfg~   97 (161)
                      -+..-+|+
T Consensus       128 eF~~~y~~  135 (169)
T 2vx8_A          128 RFQTTYGS  135 (169)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHhhh
Confidence            99888775

>3kyq_A YKT6, synaptobrevin homolog YKT6; V-snare homolog, lipid binding, cytoplasmic vesicle, ER-GOLG transport, golgi apparatus, lipoprotein; HET: DPV; 2.44A {Rattus norvegicus}

Probab=94.77  E-value=0.9  Score=35.15  Aligned_cols=95  Identities=15%  Similarity=0.160  Sum_probs=66.4

Q ss_pred             eEEEEEEcCCCC-e-EEEecCCC-----CCHHHHHHHHHHHHHHHhccCCC--ccceEEeCCeEEE-EEEeCcEEEEEEe
Q 031317            2 IHFVLLISRQGK-V-RLTKWYSP-----YTQKERSKVIRELSGVILTRGPK--LCNFVEWRGYKVV-YKRYASLYFCMCV   71 (161)
Q Consensus         2 I~al~Iln~~G~-~-~l~K~Y~~-----~~~~~~~~~~~~i~~~i~~r~~~--~~~i~~~~~~~~v-y~~~~~L~f~~v~   71 (161)
                      |-++.|+-..|+ + +|+.-|+-     ......+.+...+-+.+..|...  .+ .+..+++.+. |.+.+++.+++++
T Consensus         4 ~~~~~v~~~~~~~~~~l~~~~dlssf~~f~r~sv~ef~~f~~r~il~r~~~~~r~-s~~~~~y~fH~y~~~~gl~yl~it   82 (199)
T 3kyq_A            4 LYSLSVFYKGEPKAVLLKAAYDVSSFSFFQRSSVQEFMTFTSQLIVERSAKGSRA-SVKEQEYLCHVYVRSDSLAGVVIA   82 (199)
T ss_dssp             EEEEEEEEECSSCEEEEEEEECCTTSCTTTHHHHHHHHHHHHHHHHHTSCTTEEE-EEECSSEEEEEEECTTSEEEEEEE
T ss_pred             EEEEEEEEcCCCCceEEeeecccccccceehHhHHHHHHHHHHHHHhcCCCCCeE-EEEeCCEEEEEEEecCCEEEEEEE
Confidence            557777765544 3 45555542     22333344444444556666432  22 3467899997 9999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHHHHHHhcc
Q 031317           72 DQEDNELEILEIIHHYVEILDRYFGS   97 (161)
Q Consensus        72 ~~neNel~i~efL~~~ve~L~~yfg~   97 (161)
                      +.+-+.-..+.||..+.+-+..-+|.
T Consensus        83 d~~yp~r~AF~fL~ei~~eF~~~~~~  108 (199)
T 3kyq_A           83 DSEYPSRVAFTLLEKVLDEFSKQVDR  108 (199)
T ss_dssp             ETTSCHHHHHHHHHHHHHHHHHHSCG
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhccc
Confidence            99999999999999999888887763

>3cpt_A Mitogen-activated protein kinase kinase 1- interacting protein 1; scaffold, complex, alpha/beta, endosome, membrane, lysosome; 1.90A {Homo sapiens} SCOP: d.110.7.1 PDB: 1sko_A 2zl1_A 1vet_A 1veu_A

Probab=94.76  E-value=0.66  Score=34.47  Aligned_cols=92  Identities=11%  Similarity=0.096  Sum_probs=66.5

Q ss_pred             eEEEEEEcCCCCeEEEecCCC-CCHHHHHHHHHHHHH---HHhcc--CCCccceEEeCCeEEEEEEeCcEEEEEEecCCC
Q 031317            2 IHFVLLISRQGKVRLTKWYSP-YTQKERSKVIRELSG---VILTR--GPKLCNFVEWRGYKVVYKRYASLYFCMCVDQED   75 (161)
Q Consensus         2 I~al~Iln~~G~~~l~K~Y~~-~~~~~~~~~~~~i~~---~i~~r--~~~~~~i~~~~~~~~vy~~~~~L~f~~v~~~ne   75 (161)
                      +.+++|-|++|=+++.-.... +...-++.+...+-.   +..+-  ..+..-+..++++.+|+.....+++..++.++.
T Consensus        38 l~aI~ItDrDGVpi~kv~~~~~~e~~~r~s~lsTf~~A~dQ~sKLglGknksII~~Y~~yqvVq~n~~Plvit~Ias~~a  117 (143)
T 3cpt_A           38 LHAIVVSDRDGVPVIKVANDNAPEHALRPGFLSTFALATDQGSKLGLSKNKSIICYYNTYQVVQFNRLPLVVSFIASSSA  117 (143)
T ss_dssp             EEEEEEECTTSCEEEEEECTTSCGGGGSHHHHHHHHHHHHHHHHHTCCCEEEEEEECSSEEEEEEEETTEEEEEEEETTS
T ss_pred             eEEEEEECCCCcEEEEecCCCCchhhcccchhhhHHHHHHHHhhcCCCCCceEEEEecCeEEEEEecCCEEEEEEecCCC
Confidence            579999999999999888765 333345556665421   12221  123455667899999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHH
Q 031317           76 NELEILEIIHHYVEILDR   93 (161)
Q Consensus        76 Nel~i~efL~~~ve~L~~   93 (161)
                      |.-+++++=..+...|+.
T Consensus       118 NtG~Il~Le~~L~p~l~~  135 (143)
T 3cpt_A          118 NTGLIVSLEKELAPLFEE  135 (143)
T ss_dssp             CHHHHHHHHHHHHHHHHH
T ss_pred             CchhHhhhHHHHHHHHHH
Confidence            999999875555555543

>4afi_A AP-3 complex subunit delta-1, vesicle-associated protein 7; endocytosis, exocytosis, clathrin adaptor, chimera, fusion P; 2.80A {Homo sapiens}

Probab=94.71  E-value=0.62  Score=35.40  Aligned_cols=80  Identities=15%  Similarity=0.154  Sum_probs=60.2

Q ss_pred             CCCCeEEEecCCCC-CHHHHHHHHHHHHHHHhccCC---CccceEEeCCeEEEEEEeCcEEEEEEecCCCCHHHHHHHHH
Q 031317           10 RQGKVRLTKWYSPY-TQKERSKVIRELSGVILTRGP---KLCNFVEWRGYKVVYKRYASLYFCMCVDQEDNELEILEIIH   85 (161)
Q Consensus        10 ~~G~~~l~K~Y~~~-~~~~~~~~~~~i~~~i~~r~~---~~~~i~~~~~~~~vy~~~~~L~f~~v~~~neNel~i~efL~   85 (161)
                      .+|.++|+.|=... +-   .    .+.+.++.+-.   ..+ .+..+++.|.|...+++.++++++.+..--..+.||.
T Consensus        62 Arg~tiLAE~t~~~gnf---~----~va~~iL~kip~~~~r~-t~~~~~y~fHyl~~dgl~yl~i~D~~~~rr~aF~FLe  133 (173)
T 4afi_A           62 ARGTTILAKHAWCGGNF---L----EVTEQILAKIPSENNKL-TYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLN  133 (173)
T ss_dssp             EETTEEEEEEESSCCCH---H----HHHHHHHTTSCSSSEEE-EEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHHH
T ss_pred             ECCCEEEEEccCCCCCH---H----HHHHHHHHhCCCCCCeE-EEEECCEEEEEEEECCEEEEEEECCccChhHHHHHHH
Confidence            46889999875431 21   1    33444444322   123 4468999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcc
Q 031317           86 HYVEILDRYFGS   97 (161)
Q Consensus        86 ~~ve~L~~yfg~   97 (161)
                      .+.+-+..-+|+
T Consensus       134 dI~~eF~~~yg~  145 (173)
T 4afi_A          134 EVKKRFQTTYGS  145 (173)
T ss_dssp             HHHHHHHHHHGG
T ss_pred             HHHHHHHHHhch
Confidence            999999888875

>2j3t_C Trafficking protein particle complex subunit 1, trafficking protein particle complex subunit 3; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Mus musculus}

Probab=94.14  E-value=0.71  Score=33.91  Aligned_cols=92  Identities=15%  Similarity=0.173  Sum_probs=57.0

Q ss_pred             CeEEEEEEcCCCCeEEEecCCCC-----CHHHHHHHHHHHHHH----Hhc--cCCCc--cceEEeCCeEE-EEEEeCcEE
Q 031317            1 MIHFVLLISRQGKVRLTKWYSPY-----TQKERSKVIRELSGV----ILT--RGPKL--CNFVEWRGYKV-VYKRYASLY   66 (161)
Q Consensus         1 MI~al~Iln~~G~~~l~K~Y~~~-----~~~~~~~~~~~i~~~----i~~--r~~~~--~~i~~~~~~~~-vy~~~~~L~   66 (161)
                      ||..++|+|+.|.+++.+-|.+.     +..+...+...++.-    +.+  .....  -..+..+++++ .|..-.++-
T Consensus         2 ~i~~~~Ii~k~g~~iy~~~~~~~~~~~~~~~~~~~ll~g~~~Sl~~i~~klsp~~~~~~~~~~~t~~ykl~~~~T~TgiK   81 (145)
T 2j3t_C            2 TVHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDGFLSFQTSRYKLHYYETPTGIK   81 (145)
T ss_dssp             CEEEEEEECTTSCEEEEEESSCSSCCSSCHHHHHHHHHHHHHHHHHHHHHHCSSCCSSCEEEEECSSCEEEEEECTTSCE
T ss_pred             eEEEEEEEeCCCCEEEeeeecCCCcCCCCcchHHHHHHHHHHHHHHHHHHhCCCCCCCceEEEecCCEEEEEEEcCCCCE
Confidence            58899999999999999988642     212222333333211    111  11111  12335677777 567777899


Q ss_pred             EEEEecCCCCHHHHHHHHHHHH-HHHHHH
Q 031317           67 FCMCVDQEDNELEILEIIHHYV-EILDRY   94 (161)
Q Consensus        67 f~~v~~~neNel~i~efL~~~v-e~L~~y   94 (161)
                      |+++++.+++.  +-++++.+. ++.-+|
T Consensus        82 Fvl~td~~~~~--i~~~l~~iy~~lYv~~  108 (145)
T 2j3t_C           82 VVMNTDLGVGP--IRDVLHHIYSALYVEF  108 (145)
T ss_dssp             EEEEECTTCCC--CHHHHHHHHHTTHHHH
T ss_pred             EEEEecCCcch--HHHHHHHHHHHHHHHH
Confidence            99999988765  456677666 555554

>3cue_C Transport protein particle 18 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}

Probab=87.25  E-value=2.3  Score=31.71  Aligned_cols=92  Identities=13%  Similarity=0.209  Sum_probs=52.9

Q ss_pred             CeEEEEEEcCCCCeEEEecCCCC-----------CHHHHHHHHHH-HHHH---HhccC--CCccceE--EeCCeEE-EEE
Q 031317            1 MIHFVLLISRQGKVRLTKWYSPY-----------TQKERSKVIRE-LSGV---ILTRG--PKLCNFV--EWRGYKV-VYK   60 (161)
Q Consensus         1 MI~al~Iln~~G~~~l~K~Y~~~-----------~~~~~~~~~~~-i~~~---i~~r~--~~~~~i~--~~~~~~~-vy~   60 (161)
                      ||.+++|+|+.|..+..|-|.+.           ...+...+... +|..   +.+-+  .....+.  ..+.+++ .|.
T Consensus         2 ~i~~~~Ii~r~g~~iy~~~~~~~~~~~~~~~~~~~~~~~~~ll~g~~~SL~~i~~kls~~~~~~~f~~~~T~~ykl~~~e   81 (159)
T 3cue_C            2 GIYSFWIFDRHCNCIFDREWTLASNSASGTINSKQNEEDAKLLYGMIFSLRSITQKLSKGSVKNDIRSISTGKYRVHTYC   81 (159)
T ss_dssp             CCCEEEEECSSSCEEECCCC-------------CCHHHHHHHHHHHHHHHHHHHHHSCCSSSCCCEEEEECSSCBEEEEC
T ss_pred             eEEEEEEEcCCCceEEeeeeccccccccccccCCCCchHHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEeeCCEEEEEEE
Confidence            48899999999999999988531           11222222222 2211   11111  1112232  3456666 455


Q ss_pred             EeCcEEEEEEecCCCCHHHHHHHHHHHHH-HHHHH
Q 031317           61 RYASLYFCMCVDQEDNELEILEIIHHYVE-ILDRY   94 (161)
Q Consensus        61 ~~~~L~f~~v~~~neNel~i~efL~~~ve-~L~~y   94 (161)
                      --.++-|++++|..++++  -++|+.+.+ +.-+|
T Consensus        82 T~TgiKFvl~td~~~~~i--~~~l~~iy~~lYv~y  114 (159)
T 3cue_C           82 TASGLWFVLLSDFKQQSY--TQVLQYIYSHIYVKY  114 (159)
T ss_dssp             CSSCCEEEEECCSSSSCT--HHHHHHHHHHHHHHH
T ss_pred             eCCCCEEEEEeCCCcchH--HHHHHHHHHHHHHHH
Confidence            567899999999886654  356666665 55554

>3cue_A Transport protein particle 23 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}

Probab=84.02  E-value=14  Score=29.11  Aligned_cols=36  Identities=17%  Similarity=0.293  Sum_probs=25.9

Q ss_pred             CeEEEEEEcCCCCeEEEecCCC----CCHHHHHHHHHHHH
Q 031317            1 MIHFVLLISRQGKVRLTKWYSP----YTQKERSKVIRELS   36 (161)
Q Consensus         1 MI~al~Iln~~G~~~l~K~Y~~----~~~~~~~~~~~~i~   36 (161)
                      ||..++|+|+.|..++.|-|..    .+..+..-+..-+|
T Consensus         2 ~i~sl~IiNk~GglIY~r~~~~~~~~l~snd~l~lag~lh   41 (219)
T 3cue_A            2 AIETILVINKSGGLIYQRNFTNDEQKLNSNEYLILASTLH   41 (219)
T ss_dssp             CEEEEEEECTTSCEEEEEECSSCCCCSCHHHHHHHHHHHH
T ss_pred             eeEEEEEEeCCCCEEeehhhccCcCCCCcchhhhhhhhhH
Confidence            5899999999999999998863    34334444444443

>2j3w_A Sedlin, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Mus musculus} SCOP: d.110.4.3 PDB: 1h3q_A

Probab=81.95  E-value=12  Score=26.92  Aligned_cols=94  Identities=9%  Similarity=0.122  Sum_probs=55.6

Q ss_pred             eEEEEEEcCCCCeEEEecCCCCCH---HHHHHHHH-H-HH------HHHhccCCCcc---ceEEeCCeEE-EEEEeCcEE
Q 031317            2 IHFVLLISRQGKVRLTKWYSPYTQ---KERSKVIR-E-LS------GVILTRGPKLC---NFVEWRGYKV-VYKRYASLY   66 (161)
Q Consensus         2 I~al~Iln~~G~~~l~K~Y~~~~~---~~~~~~~~-~-i~------~~i~~r~~~~~---~i~~~~~~~~-vy~~~~~L~   66 (161)
                      |.++.|+|++|.+++.+-|.+...   .+..++.. . ++      ......+ ..+   .+-.++++++ .|..-.++=
T Consensus         6 i~~~~Ii~~~~~ply~~~~~~~~~~~~~~~~~l~~~~i~hs~ldiv~~~~~~~-~~~~l~~~~~~~~y~v~~~~T~tg~K   84 (142)
T 2j3w_A            6 SFYFVIVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLS-NNMYLKTVDKFNEWFVSAFVTAGHMR   84 (142)
T ss_dssp             CEEEEEECTTSCEEEEEEECCSCCGGGHHHHHHHHHHHHHHHHHHHHHHGGGC-SCSEEEEEEEETTEEEEEEECTTCCE
T ss_pred             EEEEEEEeCCCCEEEEEecCCcCcCCccHHHHHHHHHHHHHHHHHHHHhcCCC-CcceeEeeecccceEEEEEEcCCCcE
Confidence            589999999999999998876321   12222332 1 11      1111111 111   1222456656 566777899


Q ss_pred             EEEEecCCCCHHHHHHHHHHHHHHHHHHhcc
Q 031317           67 FCMCVDQEDNELEILEIIHHYVEILDRYFGS   97 (161)
Q Consensus        67 f~~v~~~neNel~i~efL~~~ve~L~~yfg~   97 (161)
                      |+++++.. ++-.+-.+++.+.++.-+|.-|
T Consensus        85 fvl~~d~~-~~~~i~~~~~~iy~~Y~~~v~N  114 (142)
T 2j3w_A           85 FIMLHDVR-QEDGIKNFFTDVYDLYIKFAMN  114 (142)
T ss_dssp             EEEEESSC-CHHHHHHHHHHHHHHHHHHHHS
T ss_pred             EEEEeCCC-CcHHHHHHHHHHHHHHHHHhcC
Confidence            99999874 4555667777777666655433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	161
d2vgls_	142	d.110.4.2 (S:) Sigma2 adaptin (clathrin coat assem	5e-50
d2vglm2	141	d.110.4.2 (M:1-141) Mu2 adaptin (clathrin coat ass	5e-35

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	161
d2vgls_	142	Sigma2 adaptin (clathrin coat assembly protein AP1	100.0
d2vglm2	141	Mu2 adaptin (clathrin coat assembly protein AP50)	100.0
d3cpta1	116	MEK binding partner 1, MP1 {Human (Homo sapiens) [	95.98
d1ifqa_	127	Sec22b {Mouse (Mus musculus) [TaxId: 10090]}	94.13
d1ioua_	140	Synaptobrevin homolog 1 ykt6 {Baker's yeast (Sacch	92.8
d2fh5a1	129	Signal recognition particle receptor alpha subunit	86.8

>d3cpta1 d.110.7.1 (A:3-118) MEK binding partner 1, MP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: Roadblock/LC7 domain
family: Roadblock/LC7 domain
domain: MEK binding partner 1, MP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.98  E-value=0.078  Score=36.45  Aligned_cols=92  Identities=11%  Similarity=0.112  Sum_probs=67.3

Q ss_pred             eEEEEEEcCCCCeEEEecCCC-CCHHHHHHHHHHHH---HHHhc--cCCCccceEEeCCeEEEEEEeCcEEEEEEecCCC
Q 031317            2 IHFVLLISRQGKVRLTKWYSP-YTQKERSKVIRELS---GVILT--RGPKLCNFVEWRGYKVVYKRYASLYFCMCVDQED   75 (161)
Q Consensus         2 I~al~Iln~~G~~~l~K~Y~~-~~~~~~~~~~~~i~---~~i~~--r~~~~~~i~~~~~~~~vy~~~~~L~f~~v~~~ne   75 (161)
                      +.+++|-|++|=+++.=.-.+ +....++.+...+-   .+..+  -.....-+..++++.+++-....+++.+++..+.
T Consensus        17 l~~I~iTDrDGVpv~~v~~~~~p~~~~~~~~lstf~~a~dq~sKLglg~~ksii~~Y~~~qvv~~~~~pl~vt~ia~~~a   96 (116)
T d3cpta1          17 LHAIVVSDRDGVPVIKVANDNAPEHALRPGFLSTFALATDQGSKLGLSKNKSIICYYNTYQVVQFNRLPLVVSFIASSSA   96 (116)
T ss_dssp             EEEEEEECTTSCEEEEEECTTSCGGGGSHHHHHHHHHHHHHHHHHTCCCEEEEEEECSSEEEEEEEETTEEEEEEEETTS
T ss_pred             eEEEEEEcCCCcEEEEecCCCChhhhcchHHHHHHHHHHHhhcccCCCCCcEEEEEecCeEEEEEecCceEEEEEecCCC
Confidence            679999999999987665444 22233444554432   11222  1233555778999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHH
Q 031317           76 NELEILEIIHHYVEILDR   93 (161)
Q Consensus        76 Nel~i~efL~~~ve~L~~   93 (161)
                      |.-+++.+-..+...|+.
T Consensus        97 NtG~Il~l~~~l~~~L~~  114 (116)
T d3cpta1          97 NTGLIVSLEKELAPLFEE  114 (116)
T ss_dssp             CHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHhh
Confidence            999999998888877764

>d1ifqa_ d.110.4.1 (A:) Sec22b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: SNARE-like
family: Synatpobrevin N-terminal domain
domain: Sec22b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.13  E-value=0.52  Score=32.24  Aligned_cols=48  Identities=8%  Similarity=0.072  Sum_probs=43.3

Q ss_pred             EEeCCeEEEEEEeCcEEEEEEecCCCCHHHHHHHHHHHHHHHHHHhcc
Q 031317           50 VEWRGYKVVYKRYASLYFCMCVDQEDNELEILEIIHHYVEILDRYFGS   97 (161)
Q Consensus        50 ~~~~~~~~vy~~~~~L~f~~v~~~neNel~i~efL~~~ve~L~~yfg~   97 (161)
                      +..+++.|.|...+++.++++++.+-+.-+.+.||..+-+-+..-+|.
T Consensus        54 ~~~~~y~fHy~~~~gi~yl~i~d~~~~~~laF~fLeei~~eF~~~y~~  101 (127)
T d1ifqa_          54 LEAGAMTFHYIIEQGVCYLVLCEAAFPKKLAFAYLEDLHSEFDEQHGK  101 (127)
T ss_dssp             EEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHHHHHHHHHHHHHTT
T ss_pred             EEECCEEEEEEecCCeEEEEEEccccCchhHHHHHHHHHHHHHHhhhh
Confidence            368999999999999999999999999999999999888888777664

>d1ioua_ d.110.4.1 (A:) Synaptobrevin homolog 1 ykt6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: SNARE-like
family: Synatpobrevin N-terminal domain
domain: Synaptobrevin homolog 1 ykt6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.80  E-value=0.58  Score=32.42  Aligned_cols=94  Identities=10%  Similarity=0.113  Sum_probs=61.7

Q ss_pred             eEEEEEEcCCC--CeEEEecCCC--C---CHHHHHHHHHHHHHHHhccCC--CccceEEeCCeEEE-EEEeCcEEEEEEe
Q 031317            2 IHFVLLISRQG--KVRLTKWYSP--Y---TQKERSKVIRELSGVILTRGP--KLCNFVEWRGYKVV-YKRYASLYFCMCV   71 (161)
Q Consensus         2 I~al~Iln~~G--~~~l~K~Y~~--~---~~~~~~~~~~~i~~~i~~r~~--~~~~i~~~~~~~~v-y~~~~~L~f~~v~   71 (161)
                      |-++.++...+  -+.|+..|+=  .   ..+.-+.+...+-+.+..|.+  ... .+..+++.+. |.+..+|.+++++
T Consensus         3 l~~~~v~~~~~~~~~~L~~a~Dlssf~ffqR~svkE~~~f~sr~i~~Rt~~g~r~-sv~~~~y~~h~yv~~~gl~~l~i~   81 (140)
T d1ioua_           3 IYYIGVFRSGGEKALELSEVKDLSQFGFFERSSVGQFMTFFAETVASRTGAGERQ-SIEEGNYIGHVYARSEGICGVLIT   81 (140)
T ss_dssp             CCEEEEEEEETTEEEEEEEEECCSSCCTTHHHHHHHHHHHHHHHHHHHCCSSSEE-EEEETTEEEEEECCSSSCEEEEEB
T ss_pred             EEEEEEEEcCCCCcEEEeeeccccccceeehHhHHHHHHHHHHHHhhcCCCCceE-EEEcCCeEEEEEEeeCCEEEEEEE
Confidence            34566665432  3455666552  1   122233444555566766664  234 3467888875 8888999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHHHHHHhc
Q 031317           72 DQEDNELEILEIIHHYVEILDRYFG   96 (161)
Q Consensus        72 ~~neNel~i~efL~~~ve~L~~yfg   96 (161)
                      +.+-+.-..+.||+.+.+-+..-++
T Consensus        82 d~~Yp~r~AF~~L~~i~~eF~~~~~  106 (140)
T d1ioua_          82 DKQYPVRPAYTLLNKILDEYLVAHP  106 (140)
T ss_dssp             CTTSCHHHHHHHHHHHHHHHHHSSC
T ss_pred             CCCcchHHHHHHHHHHHHHHHHHcC
Confidence            9999999999999977666655444

>d2fh5a1 d.110.4.4 (A:1-129) Signal recognition particle receptor alpha subunit, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: SNARE-like
family: SRP alpha N-terminal domain-like
domain: Signal recognition particle receptor alpha subunit, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.80  E-value=3  Score=28.43  Aligned_cols=91  Identities=16%  Similarity=0.187  Sum_probs=59.8

Q ss_pred             CeEEEEEEcCCCCeEEE-ecCCCCCHHHHHHHHHHHHHH-Hhc-cCCCccceEEeCCeEEEEEEeCc--EEEEEEecCCC
Q 031317            1 MIHFVLLISRQGKVRLT-KWYSPYTQKERSKVIRELSGV-ILT-RGPKLCNFVEWRGYKVVYKRYAS--LYFCMCVDQED   75 (161)
Q Consensus         1 MI~al~Iln~~G~~~l~-K~Y~~~~~~~~~~~~~~i~~~-i~~-r~~~~~~i~~~~~~~~vy~~~~~--L~f~~v~~~ne   75 (161)
                      ||-.+-|+++.|=++-+ +-+.+..    ....+.+.+. .+. |.+ .+ -+.++++++-|+.-++  |.|+++-..=-
T Consensus         1 MiD~f~IftkGGiVLW~~~~~~~~~----~~~IN~LI~~vlLEER~~-~~-~~~~d~y~lkw~~~Ne~~lvfV~vYQ~il   74 (129)
T d2fh5a1           1 MVDFFTIFSKGGLVLWCFQGVSDSC----TGPVNALIRSVLLQERGG-NN-SFTHEALTLKYKLDNQFELVFVVGFQKIL   74 (129)
T ss_dssp             SCSEEEEEETTSBEEEEEBTTTBSC----CCHHHHHHHHTGGGC---------CCCCCEEEEEEETTTTEEEEEEESCGG
T ss_pred             CccEEEEEeCCeEEEEeecCCCccc----chhHHHHHHHhheecccC-CC-ceeECCEEEEEEEeccCCEEEEEEEhhhh
Confidence            89999999999988876 3333211    1234444444 222 222 23 3567999999998765  78888888877


Q ss_pred             CHHHHHHHHHHHHHHHHHHhcc
Q 031317           76 NELEILEIIHHYVEILDRYFGS   97 (161)
Q Consensus        76 Nel~i~efL~~~ve~L~~yfg~   97 (161)
                      +-..+-.||..+...+.+.|++
T Consensus        75 ~l~yvd~lL~~i~~~F~~~y~~   96 (129)
T d2fh5a1          75 TLTYVDKLIDDVHRLFRDKYRT   96 (129)
T ss_dssp             GHHHHHHHHHHHHHHHHHHTHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHH
Confidence            7777778888887777777764