Citrus Sinensis ID: 031331

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-
Protein Sequence
MASSSRSHSAQSKYDVFLSFRGEDTRDNFTSHLHAAFCRKNIKTFIDEELSRGDEISQAVLNAMKGSKISVIIFSKRYASSKWCLDELVEILECKNMNGQTVVPVFYQVDPSDVRNQTGCFADAFVEHEEQFKNMPEKVQIWRAVLTEASNLSGWYSMNTR
Secondary Structure (PSIPRED)
cccccccccccccccEEEcccccccccccHHHHHHHHHHccccEEEcccccccccccHHHHHHHHHccEEEEEEcccccccHHHHHHHHHHHHcccccccEEEEEEcccccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccEEEEEcccccHHHHHHHHHHHHHHHHHccccEEEccccccccccHHHHHHHHHHccEEEEEEEccccccHHHHHHHHHHHHHHHHcccEEEEEEEEcccHHHHcccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccccccc
Coil and Loop (DISEMBL)
masssrshsaqskYDVFLsfrgedtrdnfTSHLHAAFCRKNIKTFIDEELSRGDEISQAVLNAMKGSKISVIIFSKRYASSKWCLDELVEILEcknmngqtvvpvfyqvdpsdvrnqtgcfaDAFVEHEEQFKNMPEKVQIWRAVLTEAsnlsgwysmntr
Flexible Loop (DISEMBL)
masssrshsaqskYDVFLSFRGEDTRDNFTSHLHAAFCRKNIKTFIDEELSRGDEISQAVLNAMKGSKISVIIFSKRYASSKWCLDELVEILECKNMNGQTVVPVFYQVDPSDVRNQTGCFADAFVEHEEQFKNMPEKVQIWRAVLTeasnlsgwysmntr
Low Complexity Region (SEG)
MAsssrshsaqsKYDVFLSFRGEDTRDNFTSHLHAAFCRKNIKTFIDEELSRGDEISQAVLNAMKGSKISVIIFSKRYASSKWCLDELVEILECKNMNGQTVVPVFYQVDPSDVRNQTGCFADAFVEHEEQFKNMPEKVQIWRAVLTEASNLSGWYSMNTR
Disordered region (IsUnstruct)
*************YDVFLSFRGEDTRDNFTSHLHAAFCRKNIKTFIDEELSRGDEISQAVLNAMKGSKISVIIFSKRYASSKWCLDELVEILECKNMNGQTVVPVFYQVDPSDVRNQTGCFADAFVEHEEQFKNMPEKVQIWRAVLTEASNLSGWY*****
Disordered Region (DISOPRED)
***********SKYDVFLSFRGEDTRDNFTSHLHAAFCRKNIKTFIDEELSRGDEISQAVLNAMKGSKISVIIFSKRYASSKWCLDELVEILECKNMNGQTVVPVFYQVDPSDVRNQTGCFADAFVEHEEQ*****EKVQIWRAVLTEASNLSGWYSMNT*
Disordered Region (DISEMBL)
*************YDVFLSFRGEDTRDNFTSHLHAAFCRKNIKTFIDEELSRGDEISQAVLNAMKGSKISVIIFSKRYASSKWCLDELVEILECKNMNGQTVVPVFYQVDPSDVRNQTGCFADAFVEHEEQFKNMPEKVQIWRAVLTEASNLSGWYSMNTR
Disordered Region (DISPRO)
*********AQSKYDVFLSFRGEDTRDNFTSHLHAAFCRKNIKTFIDEELSRGDEISQAVLNAMKGSKISVIIFSKRYASSKWCLDELVEILECKNMNGQTVVPVFYQVDPSDVRNQTGCFADAFVEHEEQFKNMPEKVQIWRAVLTEASNLSGWYSM***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASSSRSHSAQSKYDVFLSFRGEDTRDNFTSHLHAAFCRKNIKTFIDEELSRGDEISQAVLNAMKGSKISVIIFSKRYASSKWCLDELVEILECKNMNGQTVVPVFYQVDPSDVRNQTGCFADAFVEHEEQFKNMPEKVQIWRAVLTEASNLSGWYSMNTR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	161	2.2.26 [Sep-21-2011]
Q40392	1144	TMV resistance protein N	N/A	no	0.875	0.123	0.535	1e-38
O82500	1095	Putative disease resistan	no	no	0.956	0.140	0.496	2e-35
O23530	1301	Protein SUPPRESSOR OF npr	no	no	0.906	0.112	0.469	6e-30
Q9FHE9	354	Protein PHLOEM PROTEIN 2-	no	no	0.950	0.432	0.396	3e-28
Q9C5Q9	411	Protein PHLOEM PROTEIN 2-	no	no	0.844	0.330	0.364	9e-22
Q9SYC9	571	Vesicle-associated protei	no	no	0.900	0.253	0.346	2e-19
Q9FHE8	392	Protein PHLOEM PROTEIN 2-	no	no	0.894	0.367	0.358	2e-17
Q9SZ67	1895	Probable WRKY transcripti	no	no	0.763	0.064	0.25	2e-07
Q9FL92	1372	Probable WRKY transcripti	no	no	0.521	0.061	0.347	1e-05
Q9FHE5	332	Uncharacterized protein P	no	no	0.571	0.277	0.314	0.0001

>sp|Q40392|TMVRN_NICGU TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1

 Score =  158 bits (399), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 76/142 (53%), Positives = 100/142 (70%), Gaps = 1/142 (0%)

Query: 14  YDVFLSFRGEDTRDNFTSHLHAAFCRKNIKTFIDEE-LSRGDEISQAVLNAMKGSKISVI 72
           YDVFLSFRGEDTR  FTSHL+     K IKTF D++ L  G  I   +  A++ S+ +++
Sbjct: 12  YDVFLSFRGEDTRKTFTSHLYEVLNDKGIKTFQDDKRLEYGATIPGELCKAIEESQFAIV 71

Query: 73  IFSKRYASSKWCLDELVEILECKNMNGQTVVPVFYQVDPSDVRNQTGCFADAFVEHEEQF 132
           +FS+ YA+S+WCL+ELV+I+ECK    QTV+P+FY VDPS VRNQ   FA AF EHE ++
Sbjct: 72  VFSENYATSRWCLNELVKIMECKTRFKQTVIPIFYDVDPSHVRNQKESFAKAFEEHETKY 131

Query: 133 KNMPEKVQIWRAVLTEASNLSG 154
           K+  E +Q WR  L EA+NL G
Sbjct: 132 KDDVEGIQRWRIALNEAANLKG 153

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.
Nicotiana glutinosa (taxid: 35889)

>sp|O82500|Y4117_ARATH Putative disease resistance protein At4g11170 OS=Arabidopsis thaliana GN=At4g11170 PE=2 SV=1

 Score =  148 bits (373), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 79/159 (49%), Positives = 102/159 (64%), Gaps = 5/159 (3%)

Query: 1   MASSSRSHSAQSKYDVFLSFRGEDTRDNFTSHLHAAFCRKNIKTFIDEELSRGDEISQAV 60
           MASSS   S   +YDVF SFRGED R+NF SHL   F  K I TF D+ + R   I   +
Sbjct: 1   MASSS---SNSWRYDVFPSFRGEDVRNNFLSHLLKEFESKGIVTFRDDHIKRSHTIGHEL 57

Query: 61  LNAMKGSKISVIIFSKRYASSKWCLDELVEILECKNMNGQTVVPVFYQVDPSDVRNQTGC 120
             A++ SKISV++FS+ YASS WCLDEL+EI++CK   G  V+PVFY+VDPSD+R QTG 
Sbjct: 58  RAAIRESKISVVLFSENYASSSWCLDELIEIMKCKEEQGLKVMPVFYKVDPSDIRKQTGK 117

Query: 121 FADAFVEHEEQFKNMPEKVQIWRAVLTEASNLSGWYSMN 159
           F  +F+  E       E+   WR  LT+A+N+ G +  N
Sbjct: 118 FGMSFL--ETCCGKTEERQHNWRRALTDAANILGDHPQN 154

Arabidopsis thaliana (taxid: 3702)

>sp|O23530|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3

 Score =  129 bits (325), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 70/149 (46%), Positives = 95/149 (63%), Gaps = 3/149 (2%)

Query: 7   SHSAQSKYDVFLSFRGEDTRDNFTSHLHAAFCRKNIKTFIDEELSRGDEISQAVLNAMKG 66
           S S   +YDVF SFRGED RD+F SHL      K I TFID+E+ R   I   +L+A+K 
Sbjct: 5   SSSGSRRYDVFPSFRGEDVRDSFLSHLLKELRGKAI-TFIDDEIERSRSIGPELLSAIKE 63

Query: 67  SKISVIIFSKRYASSKWCLDELVEILECKNMNGQTVVPVFYQVDPSDVRNQTGCFADAFV 126
           S+I+++IFSK YASS WCL+ELVEI +C     Q V+P+F+ VD S+V+ QTG F   F 
Sbjct: 64  SRIAIVIFSKNYASSTWCLNELVEIHKCYTNLNQMVIPIFFHVDASEVKKQTGEFGKVF- 122

Query: 127 EHEEQFKNMPEKVQIWRAVLTEASNLSGW 155
           E   + K+  EK Q W+  L   + ++G+
Sbjct: 123 EETCKAKSEDEK-QSWKQALAAVAVMAGY 150

Disease resistance protein of the TIR-NB-LRR-type. Part of the RPP5 locus that contains a cluster of several paralogous disease resistance (R) genes. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Regulated by RNA silencing. Expression regulated by MOS1 at chromatin level. Negatively regulated at the transcript level by BON1.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FHE9|P2A08_ARATH Protein PHLOEM PROTEIN 2-LIKE A8 OS=Arabidopsis thaliana GN=PP2A8 PE=2 SV=1

 Score =  124 bits (310), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 61/154 (39%), Positives = 89/154 (57%), Gaps = 1/154 (0%)

Query: 1   MASSSRSHSAQSKYDVFLSFRGEDTRDNFTSHLHAAFCRKNIKTFIDEELSRGDEISQAV 60
           MA+SS      +   VF++FRG+D R+ F S L  A    NI  FID++   G ++    
Sbjct: 1   MAASSSVRPTPTGPQVFINFRGKDLRNGFLSFLEPAMREANINVFIDKDEVVGTDLVNLF 60

Query: 61  LNAMKGSKISVIIFSKRYASSKWCLDELVEILECKNMNGQTVVPVFYQVDPSDVRNQTGC 120
           +  ++ S+++V+IFSK Y SS+WCLDEL EI +C N  G   +P+FY++ PS V    G 
Sbjct: 61  VR-IQESRVAVVIFSKDYTSSEWCLDELAEIKDCINQGGLNAIPIFYKLAPSSVLELKGG 119

Query: 121 FADAFVEHEEQFKNMPEKVQIWRAVLTEASNLSG 154
           F D F   +E++KN PE+ Q W+  L     L G
Sbjct: 120 FGDTFRVLKEKYKNDPERTQKWQEALESIPKLKG 153

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C5Q9|P2A05_ARATH Protein PHLOEM PROTEIN 2-LIKE A5 OS=Arabidopsis thaliana GN=PP2A5 PE=2 SV=1

 Score =  102 bits (255), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 50/137 (36%), Positives = 82/137 (59%), Gaps = 1/137 (0%)

Query: 16  VFLSFRGEDTRDNFTSHLHAAFCRKNIKTFIDEELSRGDEISQAVLNAMKGSKISVIIFS 75
           VF++FRG+D R  F S L  A  ++ I  FIDE+  RG  +  ++ + +  SKI+++IFS
Sbjct: 24  VFINFRGKDLRKGFMSFLKPALKKEKINVFIDEQEERGKYLI-SLFDTIGESKIALVIFS 82

Query: 76  KRYASSKWCLDELVEILECKNMNGQTVVPVFYQVDPSDVRNQTGCFADAFVEHEEQFKNM 135
           + Y  S WC+DELV+I E  + N   ++P+FY++D   V++ TG F D F +  ++++  
Sbjct: 83  EGYCESHWCMDELVKIKEYMDQNRLIIIPIFYRLDLDVVKDLTGKFGDNFWDLVDKYQPE 142

Query: 136 PEKVQIWRAVLTEASNL 152
           P+K+  W   L     L
Sbjct: 143 PKKLHKWTEALFSVCEL 159

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SYC9|VAP14_ARATH Vesicle-associated protein 1-4 OS=Arabidopsis thaliana GN=PVA14 PE=2 SV=1

 Score = 95.1 bits (235), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 51/147 (34%), Positives = 84/147 (57%), Gaps = 2/147 (1%)

Query: 2   ASSSRSHSAQ-SKYDVFLSFRGEDTRDNFTSHLHAAFCRKNIKTFIDEELSRGDEISQAV 60
           ASS+  H     +Y VF++FRG++ R++F   L  A   + I  F DE   RG  ++  +
Sbjct: 345 ASSTDDHGITLPQYQVFINFRGDELRNSFVGFLVKAMRLEKINVFTDEVELRGTNLNY-L 403

Query: 61  LNAMKGSKISVIIFSKRYASSKWCLDELVEILECKNMNGQTVVPVFYQVDPSDVRNQTGC 120
              ++ S+++V IFS+RY  S WCLDELV++ E        VVPVFY+++ +  +   G 
Sbjct: 404 FRRIEESRVAVAIFSERYTESCWCLDELVKMKEQMEQGKLVVVPVFYRLNATACKRFMGA 463

Query: 121 FADAFVEHEEQFKNMPEKVQIWRAVLT 147
           F D     E ++++ PE++Q W+  L+
Sbjct: 464 FGDNLRNLEWEYRSEPERIQKWKEALS 490

May play a role in vesicle trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FHE8|P2A06_ARATH Protein PHLOEM PROTEIN 2-LIKE A6 OS=Arabidopsis thaliana GN=PP2A6 PE=2 SV=1

 Score = 88.2 bits (217), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 52/145 (35%), Positives = 77/145 (53%), Gaps = 1/145 (0%)

Query: 2   ASSSRSHSAQSKYDVFLSFRGEDTRDNFTSHLHAAFCRKNIKTFIDEELSRGDEISQAVL 61
           +SSS      +   VF+ FRG D R +F S L  A    NI  FIDE    G E++  +L
Sbjct: 3   SSSSVVKPTPTGPQVFICFRGADVRKHFISFLVPALREANINVFIDENEFLGSEMAN-LL 61

Query: 62  NAMKGSKISVIIFSKRYASSKWCLDELVEILECKNMNGQTVVPVFYQVDPSDVRNQTGCF 121
             ++ S+++++IFS  +  S  CL+EL +I E K+     V+P+FY+V PS V+   G F
Sbjct: 62  TRIEESELALVIFSVDFTRSHRCLNELAKIKERKDQGRLIVIPIFYKVKPSAVKFLEGKF 121

Query: 122 ADAFVEHEEQFKNMPEKVQIWRAVL 146
            D F   E   ++M    Q W+  L
Sbjct: 122 GDNFRALERNNRHMLPITQKWKEAL 146

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SZ67|WRK19_ARATH Probable WRKY transcription factor 19 OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/148 (25%), Positives = 72/148 (48%), Gaps = 25/148 (16%)

Query: 9   SAQSKYDVFLSF-RGEDTRDNFTSHLHAAFCRKNIKTFIDEELSRGDEISQAVLNAMKGS 67
           S+   YDV + + R + + ++F SHL A+ CR+ I  +  E+ +  D        A+   
Sbjct: 663 SSSKDYDVVIRYGRADISNEDFISHLRASLCRRGISVY--EKFNEVD--------ALPKC 712

Query: 68  KISVIIFSKRYASSKWCLDELVEILECKNMNGQTVVPVFYQVDPSDVRNQTGCFADAFVE 127
           ++ +I+ +  Y  S      L+ ILE ++   + V P+FY++ P D    +  +   +++
Sbjct: 713 RVLIIVLTSTYVPSN-----LLNILEHQHTEDRVVYPIFYRLSPYDFVCNSKNYERFYLQ 767

Query: 128 HEEQFKNMPEKVQIWRAVLTEASNLSGW 155
            E      P+K   W+A L E + + G+
Sbjct: 768 DE------PKK---WQAALKEITQMPGY 786

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May act also as a disease resistance protein with a serine/threonine-protein kinase activity.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL92|WRK16_ARATH Probable WRKY transcription factor 16 OS=Arabidopsis thaliana GN=WRKY16 PE=2 SV=1

 Score = 49.3 bits (116), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 50/92 (54%), Gaps = 8/92 (8%)

Query: 23  EDTRDNFTSHLHAAFCRKNIK-TFIDEELSRGDEISQAVLNAMKGSKISVIIFSKRYASS 81
           E+ R +F SHL  A  RK +   FID +    D +S    + ++ +++SV+I       S
Sbjct: 14  EEVRYSFVSHLSKALQRKGVNDVFIDSD----DSLSNESQSMVERARVSVMILPGNRTVS 69

Query: 82  KWCLDELVEILECKNMNGQTVVPVFYQVDPSD 113
              LD+LV++L+C+    Q VVPV Y V  S+
Sbjct: 70  ---LDKLVKVLDCQKNKDQVVVPVLYGVRSSE 98

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May also act as a disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FHE5|P2A07_ARATH Uncharacterized protein PHLOEM PROTEIN 2-LIKE A7 OS=Arabidopsis thaliana GN=PP2A7 PE=4 SV=1

 Score = 46.2 bits (108), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 52/105 (49%), Gaps = 13/105 (12%)

Query: 23  EDTRDNFTSHLHAAFCRKNIKTFIDEELSRGDEISQAVLNAMKGSKISVIIFSKRYASSK 82
           ED      + L      KNI  FIDEE  RG  + + +   ++ SKIS+ IFS+    SK
Sbjct: 51  EDVSKGLINFLEPVLQNKNINVFIDEEEVRGKGL-KNLFKRIQDSKISLAIFSE----SK 105

Query: 83  WCLDELVEILECKNMNGQTVVPVFYQVDPS----DVRNQTGCFAD 123
              ++L++     N +    +P+FY+VD +    D++N   C  D
Sbjct: 106 CDFNDLLK----NNESADEAIPIFYKVDATGDLADLQNSVKCKKD 146

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	161
357486483	242	TMV resistance protein N [Medicago trunc	0.962	0.640	0.619	1e-53
255561496	876	TMV resistance protein N, putative [Rici	0.950	0.174	0.633	2e-52
255555357	1094	leucine-rich repeat-containing protein,	0.937	0.138	0.655	8e-52
224127754	1125	tir-nbs-lrr resistance protein [Populus	0.944	0.135	0.631	1e-50
224127917	1470	tir-nbs-lrr resistance protein [Populus	0.981	0.107	0.626	2e-50
351722793	299	TIR-NBS-LRR type disease resistance prot	0.962	0.518	0.587	4e-50
223452603	257	TIR-NBS-LRR type disease resistance prot	0.950	0.595	0.575	5e-50
255564976	944	TMV resistance protein N, putative [Rici	0.937	0.159	0.635	8e-50
224145016	1254	tir-nbs-lrr resistance protein [Populus	0.987	0.126	0.631	1e-49
317106744	947	JHS03A10.2 [Jatropha curcas]	0.950	0.161	0.620	1e-49

>gi|357486483|ref|XP_003613529.1| TMV resistance protein N [Medicago truncatula] gi|355514864|gb|AES96487.1| TMV resistance protein N [Medicago truncatula] gi|388497304|gb|AFK36718.1| unknown [Medicago truncatula] gi|388511843|gb|AFK43983.1| unknown [Medicago truncatula]

 Score =  213 bits (543), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 96/155 (61%), Positives = 122/155 (78%)

Query: 1   MASSSRSHSAQSKYDVFLSFRGEDTRDNFTSHLHAAFCRKNIKTFIDEELSRGDEISQAV 60
           MA S+ S++ Q K++VFLSFRGEDTR  FTSHLHA   R ++ T+ID  L RGDEIS A+
Sbjct: 1   MAWSTSSNTPQQKHEVFLSFRGEDTRYTFTSHLHATLTRLDVGTYIDYHLQRGDEISSAL 60

Query: 61  LNAMKGSKISVIIFSKRYASSKWCLDELVEILECKNMNGQTVVPVFYQVDPSDVRNQTGC 120
           L A++ + +SV++FSK Y +SKWCLDELV+ILECK M GQ V+P+FY ++PSDVRNQTG 
Sbjct: 61  LRAIEEASLSVVVFSKNYGNSKWCLDELVKILECKKMRGQIVLPIFYDIEPSDVRNQTGS 120

Query: 121 FADAFVEHEEQFKNMPEKVQIWRAVLTEASNLSGW 155
           +ADAFV+HEE+F    E+VQ WR  L EA+NLSGW
Sbjct: 121 YADAFVKHEERFHGNLERVQKWREALREAANLSGW 155

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255561496|ref|XP_002521758.1| TMV resistance protein N, putative [Ricinus communis] gi|223538971|gb|EEF40568.1| TMV resistance protein N, putative [Ricinus communis]

 Score =  210 bits (534), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 97/153 (63%), Positives = 122/153 (79%)

Query: 9   SAQSKYDVFLSFRGEDTRDNFTSHLHAAFCRKNIKTFIDEELSRGDEISQAVLNAMKGSK 68
           +++ KYDVFLSFRGEDTRDNFTSHL++A  +K I TF+D+E+ RG+EIS ++  A+KGSK
Sbjct: 6   TSEKKYDVFLSFRGEDTRDNFTSHLYSALNKKKIFTFMDKEIKRGEEISPSIAKAIKGSK 65

Query: 69  ISVIIFSKRYASSKWCLDELVEILECKNMNGQTVVPVFYQVDPSDVRNQTGCFADAFVEH 128
           +SVIIFS++YA SKWCLDEL +ILECK MNGQ V+PVFY+VDP  VRNQ G FA AF +H
Sbjct: 66  LSVIIFSEKYAFSKWCLDELTKILECKKMNGQIVIPVFYRVDPVHVRNQRGSFACAFAKH 125

Query: 129 EEQFKNMPEKVQIWRAVLTEASNLSGWYSMNTR 161
           EE  K   EKV+ WR+ L EA ++SGW S+  R
Sbjct: 126 EETLKERMEKVESWRSALNEAGSISGWNSLVAR 158

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255555357|ref|XP_002518715.1| leucine-rich repeat-containing protein, putative [Ricinus communis] gi|223542096|gb|EEF43640.1| leucine-rich repeat-containing protein, putative [Ricinus communis]

 Score =  207 bits (528), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 99/151 (65%), Positives = 115/151 (76%)

Query: 11  QSKYDVFLSFRGEDTRDNFTSHLHAAFCRKNIKTFIDEELSRGDEISQAVLNAMKGSKIS 70
           Q KYDVFLSFRGEDTR NFTSHLHAA   K I TFID++L RG+EIS ++L A++ SKIS
Sbjct: 20  QEKYDVFLSFRGEDTRYNFTSHLHAALNGKKIPTFIDDDLERGNEISPSLLKAIEESKIS 79

Query: 71  VIIFSKRYASSKWCLDELVEILECKNMNGQTVVPVFYQVDPSDVRNQTGCFADAFVEHEE 130
           V+I S+ Y SSKWCL+ELV+ILEC    GQ V+PVFY+VDPS VRNQTG F D F  HEE
Sbjct: 80  VVIISQDYPSSKWCLEELVKILECMKNRGQMVIPVFYRVDPSHVRNQTGSFEDVFARHEE 139

Query: 131 QFKNMPEKVQIWRAVLTEASNLSGWYSMNTR 161
                 EKVQ WRA L E +NLSGW+S +TR
Sbjct: 140 SLSVSKEKVQSWRAALKEVANLSGWHSTSTR 170

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127754|ref|XP_002329169.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222870950|gb|EEF08081.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  203 bits (517), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 96/152 (63%), Positives = 117/152 (76%)

Query: 10  AQSKYDVFLSFRGEDTRDNFTSHLHAAFCRKNIKTFIDEELSRGDEISQAVLNAMKGSKI 69
            Q KYDVFLSFRGEDTR  F SHL+AA  RK I TFID +L+RG+EIS ++L A++ SK+
Sbjct: 11  PQEKYDVFLSFRGEDTRVCFVSHLYAALKRKQISTFIDYKLNRGEEISPSLLKAIEDSKL 70

Query: 70  SVIIFSKRYASSKWCLDELVEILECKNMNGQTVVPVFYQVDPSDVRNQTGCFADAFVEHE 129
           SV++FS  YASSKWCL+EL +ILECK + GQ V+PVFY+VDPS VRNQTG FADAF  H+
Sbjct: 71  SVVVFSDNYASSKWCLEELAKILECKKVKGQMVIPVFYRVDPSHVRNQTGSFADAFARHD 130

Query: 130 EQFKNMPEKVQIWRAVLTEASNLSGWYSMNTR 161
           +  K   EKV  WRA + EA+NLSGW S N +
Sbjct: 131 QLLKEKMEKVLNWRAAMREAANLSGWDSHNIK 162

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127917|ref|XP_002329209.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222870990|gb|EEF08121.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  203 bits (516), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 99/158 (62%), Positives = 119/158 (75%)

Query: 4   SSRSHSAQSKYDVFLSFRGEDTRDNFTSHLHAAFCRKNIKTFIDEELSRGDEISQAVLNA 63
           SS + + + KYDVFLSFRG+DTRDNF SHL  A CRK IKTFID++L RG+EI+ A+L  
Sbjct: 3   SSSAVAQKWKYDVFLSFRGKDTRDNFVSHLRDALCRKQIKTFIDDKLERGEEITGALLRT 62

Query: 64  MKGSKISVIIFSKRYASSKWCLDELVEILECKNMNGQTVVPVFYQVDPSDVRNQTGCFAD 123
           ++ S+ISVIIFS+ YASS WC+DELV+ILECK   GQ V+PVFY VDPSDV  QTG F +
Sbjct: 63  IEESRISVIIFSRNYASSPWCVDELVKILECKKAYGQIVLPVFYHVDPSDVDQQTGSFGN 122

Query: 124 AFVEHEEQFKNMPEKVQIWRAVLTEASNLSGWYSMNTR 161
           AF E E  FK   +KV  WRA LT A+N+SGW S  TR
Sbjct: 123 AFAELERNFKQKMDKVPRWRADLTSAANISGWDSQVTR 160

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722793|ref|NP_001237768.1| TIR-NBS-LRR type disease resistance protein [Glycine max] gi|223452578|gb|ACM89616.1| TIR-NBS-LRR type disease resistance protein [Glycine max]

 Score =  202 bits (513), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 91/155 (58%), Positives = 116/155 (74%)

Query: 7   SHSAQSKYDVFLSFRGEDTRDNFTSHLHAAFCRKNIKTFIDEELSRGDEISQAVLNAMKG 66
           S + Q  +DVFLSFRGEDTR  FTSHL+AA  R  +KT+ID EL RGDEIS ++L A+  
Sbjct: 12  SKTPQQVHDVFLSFRGEDTRYTFTSHLYAALTRLQVKTYIDNELERGDEISPSLLRAIDD 71

Query: 67  SKISVIIFSKRYASSKWCLDELVEILECKNMNGQTVVPVFYQVDPSDVRNQTGCFADAFV 126
           +K++VI+FS+ YASS+WCLDELV+I+ECK  NGQ +VPVFY VDP+ VR+QTG +  AF 
Sbjct: 72  AKVAVIVFSENYASSRWCLDELVKIMECKRKNGQIIVPVFYHVDPTHVRHQTGSYGHAFA 131

Query: 127 EHEEQFKNMPEKVQIWRAVLTEASNLSGWYSMNTR 161
            HE++F     KVQ WR VL E +N+SGW  + TR
Sbjct: 132 MHEQRFVGNMNKVQTWRLVLGEVANISGWDCLTTR 166

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|223452603|gb|ACM89628.1| TIR-NBS-LRR type disease resistance protein [Glycine max]

 Score =  202 bits (513), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 88/153 (57%), Positives = 117/153 (76%)

Query: 3   SSSRSHSAQSKYDVFLSFRGEDTRDNFTSHLHAAFCRKNIKTFIDEELSRGDEISQAVLN 62
           S+S S +   K++VFLSFRGEDTR  FT HLHA+  R  + T+ID  L RG+EIS ++L 
Sbjct: 4   STSSSSTPHQKHEVFLSFRGEDTRYTFTGHLHASLTRLQVNTYIDYNLQRGEEISSSLLR 63

Query: 63  AMKGSKISVIIFSKRYASSKWCLDELVEILECKNMNGQTVVPVFYQVDPSDVRNQTGCFA 122
           A++ +K+SV++FSK Y +SKWCLDEL++ILECKNM GQ V+P+FY +DPS VRNQTG +A
Sbjct: 64  AIEEAKLSVVVFSKNYGNSKWCLDELLKILECKNMRGQIVLPIFYDIDPSHVRNQTGTYA 123

Query: 123 DAFVEHEEQFKNMPEKVQIWRAVLTEASNLSGW 155
           +AF +HE+  +   +KVQ WR  L EA+NLSGW
Sbjct: 124 EAFAKHEKHLQGQMDKVQKWRVALREAANLSGW 156

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255564976|ref|XP_002523481.1| TMV resistance protein N, putative [Ricinus communis] gi|223537309|gb|EEF38940.1| TMV resistance protein N, putative [Ricinus communis]

 Score =  201 bits (511), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 96/151 (63%), Positives = 117/151 (77%)

Query: 11  QSKYDVFLSFRGEDTRDNFTSHLHAAFCRKNIKTFIDEELSRGDEISQAVLNAMKGSKIS 70
           Q KYDVF+SFRGEDTRDNFTSHL+AA  +K IK F+D++LSRG+EIS A++  ++ S +S
Sbjct: 13  QLKYDVFVSFRGEDTRDNFTSHLYAALHQKQIKAFVDDKLSRGEEISAALVKVIEESMVS 72

Query: 71  VIIFSKRYASSKWCLDELVEILECKNMNGQTVVPVFYQVDPSDVRNQTGCFADAFVEHEE 130
           VIIFS+ YA S WCLDELV+ILECK   GQ V+PVFY VDPSDV  Q G F  AF+EHE+
Sbjct: 73  VIIFSENYAFSPWCLDELVKILECKKTVGQIVLPVFYHVDPSDVAEQKGGFGAAFIEHEK 132

Query: 131 QFKNMPEKVQIWRAVLTEASNLSGWYSMNTR 161
            FK   +K+Q WRA LTEA+N+SGW S   R
Sbjct: 133 CFKERIDKLQKWRAALTEAANISGWSSSVIR 163

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145016|ref|XP_002325496.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222862371|gb|EEE99877.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  200 bits (509), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 101/160 (63%), Positives = 122/160 (76%), Gaps = 1/160 (0%)

Query: 1   MASSSRSHSAQSKYDVFLSFRGEDTRDNFTSHLHAAFCRKNIKTFIDEELSRGDEISQAV 60
           MASSS S + + KYDVFLSFRGEDTR+NFTSHL+ A CRK IKTFID+ L RG+EI+ A+
Sbjct: 1   MASSS-SVAHKRKYDVFLSFRGEDTRNNFTSHLYDALCRKKIKTFIDDGLERGEEITPAL 59

Query: 61  LNAMKGSKISVIIFSKRYASSKWCLDELVEILECKNMNGQTVVPVFYQVDPSDVRNQTGC 120
           L  ++ S+ISV+IFSK YASS WC+DELV+ILECK   GQ V+PVFY VDPSDV  QTG 
Sbjct: 60  LKKIEESRISVVIFSKNYASSPWCVDELVKILECKETCGQIVLPVFYHVDPSDVDEQTGS 119

Query: 121 FADAFVEHEEQFKNMPEKVQIWRAVLTEASNLSGWYSMNT 160
           F +AF E E  FK   +KV  WRA +T A+++SGW S  T
Sbjct: 120 FGNAFSELENIFKGKMDKVPRWRADMTYAASISGWDSQVT 159

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|317106744|dbj|BAJ53239.1| JHS03A10.2 [Jatropha curcas]

 Score =  200 bits (509), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 95/153 (62%), Positives = 114/153 (74%)

Query: 9   SAQSKYDVFLSFRGEDTRDNFTSHLHAAFCRKNIKTFIDEELSRGDEISQAVLNAMKGSK 68
           S Q +YDVFLSFRGEDTRD+FTSHL+AA C K I+TFID  L RG EIS ++L A++ SK
Sbjct: 5   SVQERYDVFLSFRGEDTRDSFTSHLYAALCDKKIQTFIDNNLVRGKEISSSLLKAIEESK 64

Query: 69  ISVIIFSKRYASSKWCLDELVEILECKNMNGQTVVPVFYQVDPSDVRNQTGCFADAFVEH 128
           ISV I S+ YASSKWCL+EL EI++C   NGQ V+PVFY++ PSDVRNQTG F DAF  +
Sbjct: 65  ISVPILSENYASSKWCLEELAEIIKCMKKNGQIVIPVFYRIRPSDVRNQTGSFHDAFARY 124

Query: 129 EEQFKNMPEKVQIWRAVLTEASNLSGWYSMNTR 161
           E+      +KVQ WRA L E + LSGW SM  R
Sbjct: 125 EKSLMVNKDKVQRWRAALKEVAGLSGWDSMAIR 157

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	161
UNIPROTKB|Q40392	1144	N "TMV resistance protein N" [	0.875	0.123	0.535	3.9e-35
TAIR|locus:1006230150	313	AT2G20142 [Arabidopsis thalian	0.857	0.440	0.524	5.1e-35
TAIR|locus:2175075	1068	AT5G41750 [Arabidopsis thalian	0.900	0.135	0.469	1.3e-32
TAIR|locus:2118106	1219	AT4G12010 [Arabidopsis thalian	0.881	0.116	0.506	1.6e-32
TAIR|locus:2136108	1095	AT4G11170 [Arabidopsis thalian	0.900	0.132	0.496	5.8e-32
TAIR|locus:2155189	980	AT5G49140 [Arabidopsis thalian	0.857	0.140	0.549	9.9e-32
TAIR|locus:2163426	1187	TAO1 "target of AVRB operation	0.888	0.120	0.503	1.1e-31
TAIR|locus:2160487	1085	AT5G41550 [Arabidopsis thalian	0.900	0.133	0.476	3.2e-31
TAIR|locus:2076043	1194	RPP1 "recognition of peronospo	0.906	0.122	0.446	3.8e-31
TAIR|locus:2098145	1240	AT3G44630 [Arabidopsis thalian	0.906	0.117	0.44	1.1e-30

UNIPROTKB|Q40392 N "TMV resistance protein N" [Nicotiana glutinosa (taxid:35889)]

 Score = 392 (143.0 bits), Expect = 3.9e-35, P = 3.9e-35
 Identities = 76/142 (53%), Positives = 100/142 (70%)

Query:    14 YDVFLSFRGEDTRDNFTSHLHAAFCRKNIKTFIDEE-LSRGDEISQAVLNAMKGSKISVI 72
             YDVFLSFRGEDTR  FTSHL+     K IKTF D++ L  G  I   +  A++ S+ +++
Sbjct:    12 YDVFLSFRGEDTRKTFTSHLYEVLNDKGIKTFQDDKRLEYGATIPGELCKAIEESQFAIV 71

Query:    73 IFSKRYASSKWCLDELVEILECKNMNGQTVVPVFYQVDPSDVRNQTGCFADAFVEHEEQF 132
             +FS+ YA+S+WCL+ELV+I+ECK    QTV+P+FY VDPS VRNQ   FA AF EHE ++
Sbjct:    72 VFSENYATSRWCLNELVKIMECKTRFKQTVIPIFYDVDPSHVRNQKESFAKAFEEHETKY 131

Query:   133 KNMPEKVQIWRAVLTEASNLSG 154
             K+  E +Q WR  L EA+NL G
Sbjct:   132 KDDVEGIQRWRIALNEAANLKG 153

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:1006230150 AT2G20142 [Arabidopsis thaliana (taxid:3702)]

 Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
 Identities = 75/143 (52%), Positives = 97/143 (67%)

Query:    13 KYDVFLSFRGEDTRDNFTSHLHAAFCRKNIKTFIDEELSRGDEISQAVLNAMKGSKISVI 72
             K+DVF+SFR +DTRDNF SHL     RK IKTF+ +EL   DE  +  L A++ SKISVI
Sbjct:     8 KHDVFISFRSKDTRDNFVSHLCGCLRRKRIKTFLYDELP-ADERYEESLKAIEVSKISVI 66

Query:    73 IFSKRYASSKWCLDELVEILECKNMNGQTVVPVFYQVDPSDVRNQTGCFADAFVEHEEQF 132
             +FS+ +  S+WCLDE+V IL+CK   GQ V+PV Y VDP D+ NQTG F DAF +  ++ 
Sbjct:    67 VFSENFGDSRWCLDEVVAILKCKEKFGQIVIPVLYHVDPLDIENQTGSFGDAFAKRRDK- 125

Query:   133 KNMPEKVQIWRAVLTEASNLSGW 155
                 E++Q W+   TEA NL GW
Sbjct:   126 ---AEQLQEWKDSFTEAINLPGW 145

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0007165 "signal transduction" evidence=IEA

TAIR|locus:2175075 AT5G41750 [Arabidopsis thaliana (taxid:3702)]

 Score = 368 (134.6 bits), Expect = 1.3e-32, P = 1.3e-32
 Identities = 69/147 (46%), Positives = 98/147 (66%)

Query:    13 KYDVFLSFRGEDTRDNFTSHLHAAFCRKNIKTFIDEELSRGDEISQAVLNAMKGSKISVI 72
             +Y VF SF G D R  F SHLH+ F  K I TF D+++ RG  I   ++  ++ +++S++
Sbjct:    12 RYQVFSSFHGPDVRKGFLSHLHSVFASKGITTFNDQKIDRGQTIGPELIQGIREARVSIV 71

Query:    73 IFSKRYASSKWCLDELVEILECKNMNGQTVVPVFYQVDPSDVRNQTGCFADAFVEHEEQF 132
             + SK+YASS WCLDELVEIL+CK   GQ V+ VFY+VDPSDV+ Q+G F +AF E   Q 
Sbjct:    72 VLSKKYASSSWCLDELVEILKCKEALGQIVMTVFYEVDPSDVKKQSGVFGEAF-EKTCQG 130

Query:   133 KNMPEKVQIWRAVLTEASNLSGWYSMN 159
             KN   K++ WR  L   + ++G +S+N
Sbjct:   131 KNEEVKIR-WRNALAHVATIAGEHSLN 156

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2118106 AT4G12010 [Arabidopsis thaliana (taxid:3702)]

 Score = 368 (134.6 bits), Expect = 1.6e-32, P = 1.6e-32
 Identities = 73/144 (50%), Positives = 99/144 (68%)

Query:    13 KYDVFLSFRGEDTRDNFTSHLHAAFCRKNIKTFIDEELSRGDEISQAVLNAMKGSKISVI 72
             ++DVFLSFRG DTR+NFT HL  A   + I +FID+ L RGD ++ A+ + ++ SKI++I
Sbjct:    10 EFDVFLSFRGFDTRNNFTGHLQKALRLRGIDSFIDDRLRRGDNLT-ALFDRIEKSKIAII 68

Query:    73 IFSKRYASSKWCLDELVEILECKNMNGQTVVPVFYQVDPSDVRNQTGCFADAFVEHEEQF 132
             +FS  YA+S WCL ELV+ILEC+N N Q VVP+FY+VD SDV  Q   FA  F   E  F
Sbjct:    69 VFSTNYANSAWCLRELVKILECRNSNQQLVVPIFYKVDKSDVEKQRNSFAVPFKLPELTF 128

Query:   133 KNM-PEKVQIWRAVLTEASNLSGW 155
               + PE++  W+A L  ASN+ G+
Sbjct:   129 PGVTPEEISSWKAALASASNILGY 152

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

TAIR|locus:2136108 AT4G11170 [Arabidopsis thaliana (taxid:3702)]

 Score = 362 (132.5 bits), Expect = 5.8e-32, P = 5.8e-32
 Identities = 73/147 (49%), Positives = 96/147 (65%)

Query:    13 KYDVFLSFRGEDTRDNFTSHLHAAFCRKNIKTFIDEELSRGDEISQAVLNAMKGSKISVI 72
             +YDVF SFRGED R+NF SHL   F  K I TF D+ + R   I   +  A++ SKISV+
Sbjct:    10 RYDVFPSFRGEDVRNNFLSHLLKEFESKGIVTFRDDHIKRSHTIGHELRAAIRESKISVV 69

Query:    73 IFSKRYASSKWCLDELVEILECKNMNGQTVVPVFYQVDPSDVRNQTGCFADAFVEHEEQF 132
             +FS+ YASS WCLDEL+EI++CK   G  V+PVFY+VDPSD+R QTG F  +F+E     
Sbjct:    70 LFSENYASSSWCLDELIEIMKCKEEQGLKVMPVFYKVDPSDIRKQTGKFGMSFLE--TCC 127

Query:   133 KNMPEKVQIWRAVLTEASNLSGWYSMN 159
                 E+   WR  LT+A+N+ G +  N
Sbjct:   128 GKTEERQHNWRRALTDAANILGDHPQN 154

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0010193 "response to ozone" evidence=IEP

TAIR|locus:2155189 AT5G49140 [Arabidopsis thaliana (taxid:3702)]

 Score = 359 (131.4 bits), Expect = 9.9e-32, P = 9.9e-32
 Identities = 78/142 (54%), Positives = 95/142 (66%)

Query:    13 KYDVFLSFRGEDTRDNFTSHLHAAFCRKNIKTFIDEELSRGDEISQAVLNAMKGSKISVI 72
             KYDVF SFRGED R NF SHL   F  K I TF D+ + R   I   +  A++ SKI V+
Sbjct:    14 KYDVFPSFRGEDVRGNFLSHLMKEFESKGIVTFKDDLIERSQTIGLELKEAVRQSKIFVV 73

Query:    73 IFSKRYASSKWCLDELVEILECKNMNGQTVVPVFYQVDPSDVRNQTGCFADAFVEHEEQF 132
             IFSK YASS WCLDELVEIL+CK    + ++P+FY+V+PSDVRNQTG F   F E  E  
Sbjct:    74 IFSKNYASSSWCLDELVEILKCKEE--RRLIPIFYKVNPSDVRNQTGKFGRGFRETCEG- 130

Query:   133 KNMPEKVQIWRAVLTEASNLSG 154
             KN  E    W+A LTEA+N++G
Sbjct:   131 KN-DETQNKWKAALTEAANIAG 151

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2163426 TAO1 "target of AVRB operation1" [Arabidopsis thaliana (taxid:3702)]

 Score = 360 (131.8 bits), Expect = 1.1e-31, P = 1.1e-31
 Identities = 74/147 (50%), Positives = 94/147 (63%)

Query:    14 YDVFLSFRGEDTRDNFTSHLHAAFCRKNIKTFIDEELSRGDEISQAVLNAMKGSKISVII 73
             + VFLSFRGED R    SH+   F R  I  FID E+ RG  I   +L A++GSKI++I+
Sbjct:    40 HPVFLSFRGEDVRKGLLSHIQKEFQRNGITPFIDNEMKRGGSIGPELLQAIRGSKIAIIL 99

Query:    74 FSKRYASSKWCLDELVEILECKNMNGQTVVPVFYQVDPSDVRNQTGCFADAFVEHEEQFK 133
              S+ Y SSKWCLDELVEI++C+   GQTV+ VFY VDPSDVR Q G F   F   ++   
Sbjct:   100 LSRNYGSSKWCLDELVEIMKCREELGQTVMTVFYDVDPSDVRKQKGDFGKVF---KKTCV 156

Query:   134 NMPEK-VQIWRAVLTEASNLSGWYSMN 159
               PE+ VQ W+  LT A+N+ G  S N
Sbjct:   157 GRPEEMVQRWKQALTSAANILGEDSRN 183

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0042742 "defense response to bacterium" evidence=IMP

TAIR|locus:2160487 AT5G41550 [Arabidopsis thaliana (taxid:3702)]

 Score = 355 (130.0 bits), Expect = 3.2e-31, P = 3.2e-31
 Identities = 70/147 (47%), Positives = 95/147 (64%)

Query:    13 KYDVFLSFRGEDTRDNFTSHLHAAFCRKNIKTFIDEELSRGDEISQAVLNAMKGSKISVI 72
             +Y VF SF G D R  F SHLH  F  K I TF D+E+ +G+ I   ++NA++ S++S++
Sbjct:    12 RYHVFPSFHGPDVRKGFLSHLHYHFASKGITTFKDQEIEKGNTIGPELVNAIRESRVSIV 71

Query:    73 IFSKRYASSKWCLDELVEILECKNMNGQTVVPVFYQVDPSDVRNQTGCFADAFVEHEEQF 132
             + SK+YASS WCLDELVEIL+CK   GQ V+ +FY VDPS VR Q G F   F++  E  
Sbjct:    72 LLSKKYASSSWCLDELVEILKCKEDQGQIVMTIFYDVDPSSVRKQKGDFGSTFMKTCEG- 130

Query:   133 KNMPEKVQIWRAVLTEASNLSGWYSMN 159
             K+   K Q W   LT  +N+ G +S+N
Sbjct:   131 KSEEVK-QRWTKALTHVANIKGEHSLN 156

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2076043 RPP1 "recognition of peronospora parasitica 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 355 (130.0 bits), Expect = 3.8e-31, P = 3.8e-31
 Identities = 67/150 (44%), Positives = 99/150 (66%)

Query:    13 KYDVFLSFRGEDTRDNFTSHLHAAFCRKNIKTFIDEELSRGDEISQAVLNAMKGSKISVI 72
             K+DVF SF G D R  F SH+  +F RK I TFID  + R   I   +  A+KGSKI+++
Sbjct:    97 KHDVFPSFHGADVRRTFLSHIMESFRRKGIDTFIDNNIERSKSIGPELKEAIKGSKIAIV 156

Query:    73 IFSKRYASSKWCLDELVEILECKNMNGQTVVPVFYQVDPSDVRNQTGCFADAFVEHEEQF 132
             + S++YASS WCLDEL EI++C+ M GQ V+ +FY+VDP+D++ QTG F  AF +     
Sbjct:   157 LLSRKYASSSWCLDELAEIMKCRQMVGQIVMTIFYEVDPTDIKKQTGEFGKAFTK---TC 213

Query:   133 KNMP-EKVQIWRAVLTEASNLSGWYSMNTR 161
             +  P E+V+ WR  L + + ++G++S + R
Sbjct:   214 RGKPKEQVERWRKALEDVATIAGYHSHSWR 243

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0002239 "response to oomycetes" evidence=IDA

GO:0000139 "Golgi membrane" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009817 "defense response to fungus, incompatible interaction" evidence=IMP;TAS

GO:0030275 "LRR domain binding" evidence=ISS

TAIR|locus:2098145 AT3G44630 [Arabidopsis thaliana (taxid:3702)]

 Score = 351 (128.6 bits), Expect = 1.1e-30, P = 1.1e-30
 Identities = 66/150 (44%), Positives = 99/150 (66%)

Query:    13 KYDVFLSFRGEDTRDNFTSHLHAAFCRKNIKTFIDEELSRGDEISQAVLNAMKGSKISVI 72
             K+DVF SF G D R  F SH+  +F RK I TFID  + R   I   +  A+KGSKI+++
Sbjct:    93 KHDVFPSFHGADVRRTFLSHIMESFRRKGIDTFIDNNIERSKSIGPELKEAIKGSKIAIV 152

Query:    73 IFSKRYASSKWCLDELVEILECKNMNGQTVVPVFYQVDPSDVRNQTGCFADAFVEHEEQF 132
             + S++YASS WCLDEL EI++C+ M GQ V+ +FY+V+P+D++ QTG F  AF +     
Sbjct:   153 LLSRKYASSSWCLDELAEIMKCRQMVGQIVMTIFYEVEPTDIKKQTGEFGKAFTK---TC 209

Query:   133 KNMP-EKVQIWRAVLTEASNLSGWYSMNTR 161
             +  P E+V+ WR  L + + ++G++S + R
Sbjct:   210 RGKPKEQVERWRKALEDVATIAGYHSHSWR 239

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	161
PLN03210	1153	PLN03210, PLN03210, Resistant to P	9e-44
smart00255	140	smart00255, TIR, Toll - interleukin 1 - resistance	5e-41
pfam01582	135	pfam01582, TIR, TIR domain	8e-41
PLN03194	187	PLN03194, PLN03194, putative disease resistance pr	4e-16
pfam13676	102	pfam13676, TIR_2, TIR domain	2e-10

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score =  153 bits (388), Expect = 9e-44
 Identities = 75/158 (47%), Positives = 98/158 (62%), Gaps = 2/158 (1%)

Query: 2   ASSSRSHSAQSKYDVFLSFRGEDTRDNFTSHLHAAFCRKNIKTFIDEELSRGDEISQAVL 61
            +SS S S    YDVF SF GED R  F SH      RK I  F D E+ R   +   + 
Sbjct: 1   MASSSSSSRNWVYDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDNEIERSQSLDPELK 60

Query: 62  NAMKGSKISVIIFSKRYASSKWCLDELVEILECKNMNGQTVVPVFYQVDPSDVRNQTGCF 121
            A++ S+I+V++FSK YASS WCL+EL+EI+ CK   GQ V+PVFY +DPS VR QTG F
Sbjct: 61  QAIRDSRIAVVVFSKNYASSSWCLNELLEIVRCKEELGQLVIPVFYGLDPSHVRKQTGDF 120

Query: 122 ADAFVEHEEQFKNMPEKVQIWRAVLTEASNLSGWYSMN 159
            +AF E   Q K   EK+Q W+  LT+ +N+ G++S N
Sbjct: 121 GEAF-EKTCQNKTEDEKIQ-WKQALTDVANILGYHSQN 156

syringae 6; Provisional. Length = 1153

>gnl|CDD|214587 smart00255, TIR, Toll - interleukin 1 - resistance

 Score =  133 bits (338), Expect = 5e-41
 Identities = 53/142 (37%), Positives = 78/142 (54%), Gaps = 4/142 (2%)

Query: 13  KYDVFLSFRG-EDTRDNFTSHLHAAFCRKNIKTFIDEELSRGDEISQAVLNAMKGSKISV 71
           +YDVF+S+ G ED R+ F SHL        +  FID+    G    + +  A++ S+I++
Sbjct: 1   EYDVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDFE-PGGGDLEEIDEAIEKSRIAI 59

Query: 72  IIFSKRYASSKWCLDELVEILECK-NMNGQTVVPVFYQVDPSDVRNQTGCFADAFVEHEE 130
           ++ S  YA S+WCLDELV  LE      G  V+P+FY+V PSDVR Q G F   F ++  
Sbjct: 60  VVLSPNYAESEWCLDELVAALENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVFKKNYL 119

Query: 131 QFKNMPEKVQIWRAVLTEASNL 152
           ++    EK Q W+  L    + 
Sbjct: 120 KW-PEDEKEQFWKKALYAVPSK 140

Length = 140

>gnl|CDD|216585 pfam01582, TIR, TIR domain

 Score =  133 bits (337), Expect = 8e-41
 Identities = 56/135 (41%), Positives = 86/135 (63%), Gaps = 3/135 (2%)

Query: 16  VFLSFRGEDTRDNFTSHLHAAFCRKNIKTFIDE-ELSRGDEISQAVLNAMKGSKISVIIF 74
           VF+SF G+D RD F SHL      K IK  ID+ +   G+ I + +  A++ S+ +++IF
Sbjct: 1   VFVSFSGKDDRDTFVSHLLKELEEKGIKLCIDDRDELPGESILENLFEAIEKSRRAIVIF 60

Query: 75  SKRYASSKWCLDELVEILECKN--MNGQTVVPVFYQVDPSDVRNQTGCFADAFVEHEEQF 132
           S  YASS+WCLDELVEI++C       + ++P+FY+VDPSDVR Q+G F  AF++  +  
Sbjct: 61  SSNYASSEWCLDELVEIVKCALEGGGKKVILPIFYKVDPSDVRPQSGKFGKAFLKTLKWS 120

Query: 133 KNMPEKVQIWRAVLT 147
            +  +K++ W+  L 
Sbjct: 121 GDKEDKIRFWKKALY 135

The Toll/interleukin-1 receptor (TIR) homology domain is an intracellular signalling domain found in MyD88, interleukin 1 receptor and the Toll receptor. It contains three highly-conserved regions, and mediates protein-protein interactions between the Toll-like receptors (TLRs) and signal-transduction components. TIR-like motifs are also found in plant proteins thought to be involved in resistance to disease. When activated, TIR domains recruit cytoplasmic adaptor proteins MyD88 and TOLLIP (Toll interacting protein). In turn, these associate with various kinases to set off signalling cascades. Length = 135

>gnl|CDD|215626 PLN03194, PLN03194, putative disease resistance protein; Provisional

 Score = 71.4 bits (175), Expect = 4e-16
 Identities = 38/111 (34%), Positives = 63/111 (56%), Gaps = 5/111 (4%)

Query: 6   RSHSAQSKYDVFLSFRGEDTRDNFTSHLHAAFCRKNIKTFID-EELSRGDEISQAVLNAM 64
            S S+    DVF++ RG DT+    + L+    R N++ F+D + +  GD++   + +A+
Sbjct: 19  SSSSSAKPCDVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAI 78

Query: 65  KGSKISVIIFSKRYASSKWCLDELVEILECKNMNGQTVVPVFYQVDPSDVR 115
           +  K+ V +FS RY  S +CL EL  I+E K    + V+P+F  V PS +R
Sbjct: 79  RNCKVGVAVFSPRYCESYFCLHELALIMESK----KRVIPIFCDVKPSQLR 125

Length = 187

>gnl|CDD|222311 pfam13676, TIR_2, TIR domain

 Score = 54.1 bits (131), Expect = 2e-10
 Identities = 21/99 (21%), Positives = 47/99 (47%), Gaps = 8/99 (8%)

Query: 16  VFLSFRGEDTRDNFTSHLHAAFCRKNIKTFIDEELSRGDEISQAVLNAMKGSKISVIIFS 75
           VF+S+   D    +   L  A     I+ ++D ++  G++    +  A++ + + +++ S
Sbjct: 1   VFISYASADRE--WAEWLADALEAAGIRVWLDWDIPPGEDWRDEIEEALRSADVVLVLLS 58

Query: 76  KRYASSKWCLDELVEILECKNMNGQTVVPVFYQVDPSDV 114
             Y +S WC  E    LE     G+ ++PV   ++  ++
Sbjct: 59  PAYLASPWCRAEWGAALE----RGKRLIPVR--LEDCEL 91

This is a family of bacterial Toll-like receptors. Length = 102

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	161
PLN03210	1153	Resistant to P. syringae 6; Provisional	100.0
PLN03194	187	putative disease resistance protein; Provisional	100.0
smart00255	140	TIR Toll - interleukin 1 - resistance.	99.95
PF01582	141	TIR: TIR domain; InterPro: IPR000157 In Drosophila	99.94
PF13676	102	TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_	99.8
KOG3678	832	consensus SARM protein (with sterile alpha and arm	99.06
PF08937	130	DUF1863: MTH538 TIR-like domain (DUF1863); InterPr	98.75
PF08357	150	SEFIR: SEFIR domain; InterPro: IPR013568 This doma	98.03
PF10137	125	TIR-like: Predicted nucleotide-binding protein con	97.17
PF13271	83	DUF4062: Domain of unknown function (DUF4062)	94.74
COG4916	329	Uncharacterized protein containing a TIR (Toll-Int	91.55
COG4271	233	Predicted nucleotide-binding protein containing TI	89.67
PF05014	113	Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransfer	89.2
PF14258	70	DUF4350: Domain of unknown function (DUF4350)	85.76

>PLN03210 Resistant to P

Probab=100.00  E-value=5.2e-46  Score=348.66  Aligned_cols=156  Identities=46%  Similarity=0.747  Sum_probs=147.6

Q ss_pred             CCCCCCCCCCCCcccEEEcCccCcCcccHHHHHHHHHhcCCeeeeecCcccCcccchHHHHHhhhcCcEEEEEeeccccc
Q 031331            1 MASSSRSHSAQSKYDVFLSFRGEDTRDNFTSHLHAAFCRKNIKTFIDEELSRGDEISQAVLNAMKGSKISVIIFSKRYAS   80 (161)
Q Consensus         1 m~~~~~s~~~~~~ydVFISy~~~D~r~~fv~~L~~~L~~~gi~~f~d~~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~   80 (161)
                      ||+||||+ +.++|||||||||+|+|++|++||+.+|.++||++|.|+++.+|+.|.+++.+||++|+++|||||++|+.
T Consensus         1 ~~~~~~~~-~~~~~~vf~sfrg~d~r~~f~~hl~~~l~~~~i~~f~d~~~~~g~~~~~~l~~~i~~s~~~ivv~s~~ya~   79 (1153)
T PLN03210          1 MASSSSSS-RNWVYDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDNEIERSQSLDPELKQAIRDSRIAVVVFSKNYAS   79 (1153)
T ss_pred             CCCCCCCC-CCCCCcEEeeCCCcccccCHHHHHHHHHHHCCCeEEccCCccCCCcccHHHHHHHHhCeEEEEEecCCccc
Confidence            77777655 57899999999999999999999999999999999998889999999999999999999999999999999


Q ss_pred             ChhhHHHHHHHHHHHhhCCceeeeEEeecCcccccccccchHHHHHHHHHhcCCChHHHHHHHHHHHHhhcccceeecC
Q 031331           81 SKWCLDELVEILECKNMNGQTVVPVFYQVDPSDVRNQTGCFADAFVEHEEQFKNMPEKVQIWRAVLTEASNLSGWYSMN  159 (161)
Q Consensus        81 S~wc~~El~~~~~~~~~~~~~viPIfy~v~p~~v~~~~~~f~~~f~~~~~~~~~~~~~~~~W~~al~~v~~~~G~~~~~  159 (161)
                      |.||++||++|++|+++.++.|+||||+|+|+||++|+|.||++|.+++++.  +++++++||+||++|++++||++.+
T Consensus        80 s~wcl~el~~i~~~~~~~~~~v~pvfy~v~p~~v~~~~g~f~~~f~~~~~~~--~~~~~~~w~~al~~~~~~~g~~~~~  156 (1153)
T PLN03210         80 SSWCLNELLEIVRCKEELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQNK--TEDEKIQWKQALTDVANILGYHSQN  156 (1153)
T ss_pred             chHHHHHHHHHHHhhhhcCceEEEEEecccHHHHhhccchHHHHHHHHhccc--chhHHHHHHHHHHHHhCcCceecCC
Confidence            9999999999999999999999999999999999999999999999988764  4789999999999999999999864

syringae 6; Provisional

>PLN03194 putative disease resistance protein; Provisional

Probab=100.00  E-value=9.1e-46  Score=282.43  Aligned_cols=132  Identities=32%  Similarity=0.564  Sum_probs=122.6

Q ss_pred             CCcccEEEcCccCcCcccHHHHHHHHHhcCCeeeeecCc-ccCcccchHHHHHhhhcCcEEEEEeecccccChhhHHHHH
Q 031331           11 QSKYDVFLSFRGEDTRDNFTSHLHAAFCRKNIKTFIDEE-LSRGDEISQAVLNAMKGSKISVIIFSKRYASSKWCLDELV   89 (161)
Q Consensus        11 ~~~ydVFISy~~~D~r~~fv~~L~~~L~~~gi~~f~d~~-~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~El~   89 (161)
                      ..+|||||||+|+|+|++|++||+.+|+++||++|+|+. +.+|+.|.++|.+||++|+++|+||||+|+.|.||++||+
T Consensus        24 ~~~yDVFISFrG~DtR~~FvshL~~aL~~~GI~vF~D~~el~~G~~i~~~L~~AIeeSri~IvVfS~~Ya~S~WCLdEL~  103 (187)
T PLN03194         24 AKPCDVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIRNCKVGVAVFSPRYCESYFCLHELA  103 (187)
T ss_pred             CCCCcEEEeCCCccccccHHHHHHHHHHHCCCEEEEcCccccCCCcHHHHHHHHHHhCeEEEEEECCCcccchhHHHHHH
Confidence            578999999999999999999999999999999999987 9999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhCCceeeeEEeecCccccccc-ccchHHHHHHHHHhcCCChHHHHHHHHHHHHhhcccceeecC
Q 031331           90 EILECKNMNGQTVVPVFYQVDPSDVRNQ-TGCFADAFVEHEEQFKNMPEKVQIWRAVLTEASNLSGWYSMN  159 (161)
Q Consensus        90 ~~~~~~~~~~~~viPIfy~v~p~~v~~~-~~~f~~~f~~~~~~~~~~~~~~~~W~~al~~v~~~~G~~~~~  159 (161)
                      +|+++.    ..||||||+|+|++|++| .|.             .+.+++++||.||++|++++|+++..
T Consensus       104 ~I~e~~----~~ViPIFY~VdPsdVr~q~~~~-------------~~~e~v~~Wr~AL~~va~l~G~~~~~  157 (187)
T PLN03194        104 LIMESK----KRVIPIFCDVKPSQLRVVDNGT-------------CPDEEIRRFNWALEEAKYTVGLTFDS  157 (187)
T ss_pred             HHHHcC----CEEEEEEecCCHHHhhccccCC-------------CCHHHHHHHHHHHHHHhccccccCCC
Confidence            999863    489999999999999997 332             24689999999999999999998754

>smart00255 TIR Toll - interleukin 1 - resistance

Probab=99.95  E-value=8.7e-27  Score=169.98  Aligned_cols=137  Identities=36%  Similarity=0.684  Sum_probs=117.2

Q ss_pred             cccEEEcCcc-CcCcccHHHHHHHHHhcCCeeeeecCcccCcccchHHHHHhhhcCcEEEEEeecccccChhhHHHHHHH
Q 031331           13 KYDVFLSFRG-EDTRDNFTSHLHAAFCRKNIKTFIDEELSRGDEISQAVLNAMKGSKISVIIFSKRYASSKWCLDELVEI   91 (161)
Q Consensus        13 ~ydVFISy~~-~D~r~~fv~~L~~~L~~~gi~~f~d~~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~El~~~   91 (161)
                      +|||||||++ ++....|+.+|...|...|+.+|.|+....|... .+|.++|++|+++|+|+||+|+.|+||..|+..+
T Consensus         1 ~~dvFISys~~~~~~~~~v~~L~~~l~~~~~~v~~d~~~~~~~~~-~~i~~~i~~s~~~i~vlS~~~~~S~w~~~E~~~a   79 (140)
T smart00255        1 EYDVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDFEPGGGDL-EEIDEAIEKSRIAIVVLSPNYAESEWCLDELVAA   79 (140)
T ss_pred             CCeEEEECCCCHHHHHHHHHHHHHHhhcCCcEEEecCcccccchH-HHHHHHHHHCcEEEEEECcccccChhHHHHHHHH
Confidence            5999999999 4555789999999999999999998764333333 3999999999999999999999999999999999


Q ss_pred             HHHHhh-CCceeeeEEeecCcccccccccchHHHHHHHHHhcCCChHHHHHHHHHHHHhhc
Q 031331           92 LECKNM-NGQTVVPVFYQVDPSDVRNQTGCFADAFVEHEEQFKNMPEKVQIWRAVLTEASN  151 (161)
Q Consensus        92 ~~~~~~-~~~~viPIfy~v~p~~v~~~~~~f~~~f~~~~~~~~~~~~~~~~W~~al~~v~~  151 (161)
                      +++... ...+||||+++..|+++.++.+.++..+..+..++..+..+ +.|+.++..+.+
T Consensus        80 ~~~~~~~~~~~iIPI~~~~~~~~~~~~~~~l~~~~~~~~~~w~~~~~~-~fW~~~~~~l~~  139 (140)
T smart00255       80 LENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVLKKNYLKWPEDEKE-RFWKKALYAVPS  139 (140)
T ss_pred             HHHHHHcCCCeEEEEEEecChHHHHhcccHHHHHHHHHHhhcCCchhH-HHHHHHHHHhcc
Confidence            987654 67899999999889999999999999998887777654444 899999988764

>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo

Probab=99.94  E-value=1.7e-28  Score=180.74  Aligned_cols=132  Identities=33%  Similarity=0.588  Sum_probs=115.4

Q ss_pred             EEEcCccCcCcccHHHHHHHHHhcC--CeeeeecCc-ccCcccchHHHHHhhhcCcEEEEEeecccccChhhHHHHHHHH
Q 031331           16 VFLSFRGEDTRDNFTSHLHAAFCRK--NIKTFIDEE-LSRGDEISQAVLNAMKGSKISVIIFSKRYASSKWCLDELVEIL   92 (161)
Q Consensus        16 VFISy~~~D~r~~fv~~L~~~L~~~--gi~~f~d~~-~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~El~~~~   92 (161)
                      |||||++.+.+..|+.+|.++|+++  |+++|++++ +.+|..+.++|.++|++|+++|+|||++|+.|+||+.||..++
T Consensus         1 vfisy~~~~d~~~~~~~L~~~Le~~~~g~~~c~~~rD~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~s~wc~~el~~a~   80 (141)
T PF01582_consen    1 VFISYSGKDDREWFVSHLLPELEERPYGYKLCLDERDFLPGESILDNIQEAIERSRRTIVVLSRNYLSSEWCLFELQEAL   80 (141)
T ss_dssp             EEEEE-GHHGHHHHHHCHHHHHHCTSSTS-EEEHHHCTSSSSCHHHHHHHHHHTEEEEEEEESHHHHHHTHHHHHHHHHH
T ss_pred             cEEEeCCCCcHHHHHHHHHHHHHhCCCCeEEEEechhhcccccccchhhHhhhhceeeEEEeecccccccchhhhhhhhh
Confidence            8999999433688999999999999  999999876 9999999999999999999999999999999999999999999


Q ss_pred             HHHhhCC--ceeeeEEeecCccccc-ccccchHHHHHHHHHhcCCC--hHHHHHHHHHHH
Q 031331           93 ECKNMNG--QTVVPVFYQVDPSDVR-NQTGCFADAFVEHEEQFKNM--PEKVQIWRAVLT  147 (161)
Q Consensus        93 ~~~~~~~--~~viPIfy~v~p~~v~-~~~~~f~~~f~~~~~~~~~~--~~~~~~W~~al~  147 (161)
                      ++....+  ..|+||||++.+++++ .+.+.|+..|.....-...+  .++...|++++.
T Consensus        81 ~~~~~~~~~~~Il~v~~~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~fW~~l~~  140 (141)
T PF01582_consen   81 ERLLEEGRDKLILPVFYDVSPSDVRPDQSLRFLLRFLTYLRWPDDDSREDRSWFWKKLRY  140 (141)
T ss_dssp             HHHHCSTCTTEEEEESSSS-CHHCHTHHHHHHHHHCTHCEETSSSGGGGGHHHHHHHHHH
T ss_pred             hhccccccccceeeEeccCChhhcChhhhHHHHHHhhhheeCCCCCCccHHHHHHHHHhc
Confidence            9987654  8999999999999999 79999999998776655433  578999999975

In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....

>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A

Probab=99.80  E-value=5.2e-20  Score=127.98  Aligned_cols=87  Identities=26%  Similarity=0.571  Sum_probs=75.3

Q ss_pred             EEEcCccCcCcccHHHHHHHHHhcCCeeeeecCcccCcccchHHHHHhhhcCcEEEEEeecccccChhhHHHHHHHHHHH
Q 031331           16 VFLSFRGEDTRDNFTSHLHAAFCRKNIKTFIDEELSRGDEISQAVLNAMKGSKISVIIFSKRYASSKWCLDELVEILECK   95 (161)
Q Consensus        16 VFISy~~~D~r~~fv~~L~~~L~~~gi~~f~d~~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~El~~~~~~~   95 (161)
                      |||||+++|  ..++..|...|+++|+++|+|.++.+|+.+.+.|.++|++|+++|+++|++|..|+||..|+..+.   
T Consensus         1 VFIS~~~~D--~~~a~~l~~~L~~~g~~v~~d~~~~~g~~~~~~i~~~i~~s~~~i~~~S~~~~~s~~~~~E~~~a~---   75 (102)
T PF13676_consen    1 VFISYSSED--REFAERLAERLESAGIRVFLDRDIPPGEDWREEIERAIERSDCVIVLLSPNYLKSPWCRFELGAAW---   75 (102)
T ss_dssp             EEEEEEGGG--CCCHHHHHHHHHHTT--EE-GGEE-TTS-HHCCCHHCCTTEEEEEEEEEHHHHCTHHHHHHHHHHH---
T ss_pred             eEEEecCCc--HHHHHHHHHHHhhcCCEEEEEEeCCCCCCHHHHHHHHHHhCCEEEEEECcccccChHHHHHHHHHH---
Confidence            899999999  479999999999999999999779999999999999999999999999999999999999999883   


Q ss_pred             hhCCceeeeEEee
Q 031331           96 NMNGQTVVPVFYQ  108 (161)
Q Consensus        96 ~~~~~~viPIfy~  108 (161)
                       +.+.+||||.++
T Consensus        76 -~~~~~iipv~~~   87 (102)
T PF13676_consen   76 -KRGKPIIPVRLD   87 (102)
T ss_dssp             -CTSESEEEEECS
T ss_pred             -HCCCEEEEEEEC
Confidence             345699999954

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=99.06  E-value=5.4e-10  Score=96.24  Aligned_cols=93  Identities=20%  Similarity=0.458  Sum_probs=76.1

Q ss_pred             CCCCcccEEEcCccCcCcccHHHHHHHHHhcCCeeeeecCc-ccCcccchHHHHHhhhcCcEEEEEeecccc----cC--
Q 031331            9 SAQSKYDVFLSFRGEDTRDNFTSHLHAAFCRKNIKTFIDEE-LSRGDEISQAVLNAMKGSKISVIIFSKRYA----SS--   81 (161)
Q Consensus         9 ~~~~~ydVFISy~~~D~r~~fv~~L~~~L~~~gi~~f~d~~-~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~----~S--   81 (161)
                      +.+++.||||||+..- ...+++-|.-.|+-+|++||+|-+ +..|. +.+.+.+.|...+.+|+|++||.+    +.  
T Consensus       608 ~~skq~DVFISYRRst-GnQLASLiKV~LQL~GyrVFIDVdKL~AGK-FdssLlkni~aAkhFiLVLtP~sLDr~lnD~n  685 (832)
T KOG3678|consen  608 MLSKQIDVFISYRRST-GNQLASLIKVLLQLRGYRVFIDVDKLYAGK-FDSSLLKNIQAAKHFILVLTPNSLDRLLNDDN  685 (832)
T ss_pred             cccCCcceEEEeeccc-cHHHHHHHHHHHHhcCceEEEehhhhhccc-ccHHHHHHHHhhheeEEEeCcchHHHHhcccc
Confidence            4567899999998764 578999999999999999999988 88886 567899999999999999999976    33  


Q ss_pred             --hhhHHHHHHHHHHHhhCCceeeeEEe
Q 031331           82 --KWCLDELVEILECKNMNGQTVVPVFY  107 (161)
Q Consensus        82 --~wc~~El~~~~~~~~~~~~~viPIfy  107 (161)
                        .|...||..+++|    +..|||||-
T Consensus       686 CeDWVHKEl~~Afe~----~KNIiPI~D  709 (832)
T KOG3678|consen  686 CEDWVHKELKCAFEH----QKNIIPIFD  709 (832)
T ss_pred             HHHHHHHHHHHHHHh----cCCeeeeec
Confidence              4555566655555    448999984

>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments

Probab=98.75  E-value=1.6e-08  Score=73.52  Aligned_cols=90  Identities=23%  Similarity=0.453  Sum_probs=48.6

Q ss_pred             ccEEEcCccCcCcccHHHHHHHHHhcC-------Ceee-ee---------cCc-ccCcccchHHHHHhhhcCcEEEEEee
Q 031331           14 YDVFLSFRGEDTRDNFTSHLHAAFCRK-------NIKT-FI---------DEE-LSRGDEISQAVLNAMKGSKISVIIFS   75 (161)
Q Consensus        14 ydVFISy~~~D~r~~fv~~L~~~L~~~-------gi~~-f~---------d~~-~~~G~~i~~~i~~aI~~S~~~Ivv~S   75 (161)
                      |.|||||++.|. ...+..|...+...       .+.. |.         +.. ....+.|...|.+.|.+|.++||+++
T Consensus         1 ~~vFIS~~~~d~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~I~~~i~~s~~~IVLig   79 (130)
T PF08937_consen    1 YKVFISYSHDDD-DWYYDQLKEWLENSYEIPRDKNFDFRFYDVSKWEPIRSRDDDSSSEYIKRKIRERIKNSSVTIVLIG   79 (130)
T ss_dssp             ----------TH-H-HHHHHHHHHHH-------TTSS--BT---TTT---TTS---TTTTHHHHHHHHHHTEEEEEEE--
T ss_pred             CCccccccccCc-HHHHHHHHHHhccccccccccccccCcccccccCcccCccccchHHHHHHHHHHHHhcCCEEEEEeC
Confidence            579999999984 23677777777652       2211 11         111 22334788999999999999999999


Q ss_pred             cccccChhhHHHHHHHHHHHhhCCceeeeEEee
Q 031331           76 KRYASSKWCLDELVEILECKNMNGQTVVPVFYQ  108 (161)
Q Consensus        76 ~~y~~S~wc~~El~~~~~~~~~~~~~viPIfy~  108 (161)
                      ++-..|.|+..|+..+++    .+..||.|.+.
T Consensus        80 ~~T~~s~wV~~EI~~A~~----~~~~Ii~V~~~  108 (130)
T PF08937_consen   80 PNTAKSKWVNWEIEYALK----KGKPIIGVYLP  108 (130)
T ss_dssp             TT----HHHHHHHHHHTT----T---EEEEETT
T ss_pred             CCcccCcHHHHHHHHHHH----CCCCEEEEECC
Confidence            999999999999998865    56688888753

The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.

>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e

Probab=98.03  E-value=3.5e-05  Score=56.81  Aligned_cols=64  Identities=16%  Similarity=0.294  Sum_probs=51.9

Q ss_pred             cEEEcCccCcCc-ccHHHHHHHHHhcC-CeeeeecCc-cc--CcccchHHHHHhhhcCcEEEEEeeccc
Q 031331           15 DVFLSFRGEDTR-DNFTSHLHAAFCRK-NIKTFIDEE-LS--RGDEISQAVLNAMKGSKISVIIFSKRY   78 (161)
Q Consensus        15 dVFISy~~~D~r-~~fv~~L~~~L~~~-gi~~f~d~~-~~--~G~~i~~~i~~aI~~S~~~Ivv~S~~y   78 (161)
                      -|||||+++... ...|..|...|++. |+.|.+|.. ..  ++..+..=+.+.+++++.+|+|+||.+
T Consensus         2 kVfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~lD~~~~~~i~~~g~~~W~~~~~~~ad~Vliv~S~~~   70 (150)
T PF08357_consen    2 KVFISYSHDSEEHKEWVLALAEFLRQNCGIDVILDQWELNEIARQGPPRWMERQIREADKVLIVCSPGY   70 (150)
T ss_pred             eEEEEeCCCCHHHHHHHHHHHHHHHhccCCceeecHHhhcccccCCHHHHHHHHHhcCCEEEEEeccch
Confidence            499999986543 46799999999999 999999986 52  355666677888999999999999544

g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].

>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins

Probab=97.17  E-value=0.0012  Score=47.93  Aligned_cols=87  Identities=14%  Similarity=0.163  Sum_probs=63.5

Q ss_pred             cEEEcCccCcCcccHHHHHHHHHhcCCeeeeecCc-ccCcccchHHHHHhhhcCcEEEEEeecccc-------------c
Q 031331           15 DVFLSFRGEDTRDNFTSHLHAAFCRKNIKTFIDEE-LSRGDEISQAVLNAMKGSKISVIIFSKRYA-------------S   80 (161)
Q Consensus        15 dVFISy~~~D~r~~fv~~L~~~L~~~gi~~f~d~~-~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~-------------~   80 (161)
                      .|||.|+ .|  ...+..+...|+..|+.+-+-.. ...|..+.+.+.+.+.+++.+|++++|+=.             .
T Consensus         1 kVFIvhg-~~--~~~~~~v~~~L~~~~~ep~i~~~~~~~g~tiie~le~~~~~~~faIvl~TpDD~~~~~~~~~~~~~~a   77 (125)
T PF10137_consen    1 KVFIVHG-RD--LAAAEAVERFLEKLGLEPIIWHEQPNLGQTIIEKLEEAADSVDFAIVLFTPDDIGYSRGEEEDLQPRA   77 (125)
T ss_pred             CEEEEeC-CC--HHHHHHHHHHHHhCCCceEEeecCCCCCCchHHHHHHHhccCCEEEEEEcccccccccCCcccccccc
Confidence            3899998 55  26788899999977877655333 789999999999999999999999998522             1


Q ss_pred             ChhhHHHHHHHHHHHhhCCceeeeEE
Q 031331           81 SKWCLDELVEILECKNMNGQTVVPVF  106 (161)
Q Consensus        81 S~wc~~El~~~~~~~~~~~~~viPIf  106 (161)
                      -...+.|+..++...  +..+++-+.
T Consensus        78 R~NVifE~G~f~g~L--Gr~rv~~l~  101 (125)
T PF10137_consen   78 RQNVIFELGLFIGKL--GRERVFILV  101 (125)
T ss_pred             ccceeehhhHHHhhc--CcceEEEEE
Confidence            234567887776543  233555443

Their exact function has not, as yet, been defined.

>PF13271 DUF4062: Domain of unknown function (DUF4062)

Probab=94.74  E-value=0.1  Score=34.72  Aligned_cols=67  Identities=21%  Similarity=0.217  Sum_probs=49.3

Q ss_pred             cEEEcCccCcCcccHHHHHHHHHhcCCeeeeecCcc-cCcccchHHHHHhhhcCcEEEEEeecccccCh
Q 031331           15 DVFLSFRGEDTRDNFTSHLHAAFCRKNIKTFIDEEL-SRGDEISQAVLNAMKGSKISVIIFSKRYASSK   82 (161)
Q Consensus        15 dVFISy~~~D~r~~fv~~L~~~L~~~gi~~f~d~~~-~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~   82 (161)
                      .||||-.-.|.. .--..|...|.+.|..+..-+.+ ..+....+.+.+.|++|+++|.++-..|-..+
T Consensus         1 rVFiSSt~~Dl~-~eR~~l~~~i~~~~~~~~~~e~~~a~~~~~~~~cl~~v~~cDifI~ilG~rYG~~~   68 (83)
T PF13271_consen    1 RVFISSTFRDLK-EERDALIEAIRRLGCEPVGMEFFPASDQSPLEICLKEVDECDIFILILGNRYGSVP   68 (83)
T ss_pred             CEEEecChhhHH-HHHHHHHHHHHHCCCeeeeeeeecCCCCCHHHHHHHHHhhCCEEEEeeccccCCCC
Confidence            389998777752 33466777887777766543332 34566677899999999999999999997643

>COG4916 Uncharacterized protein containing a TIR (Toll-Interleukin 1-resistance) domain [Function unknown]

Probab=91.55  E-value=0.28  Score=39.94  Aligned_cols=100  Identities=19%  Similarity=0.196  Sum_probs=67.2

Q ss_pred             CCCCcccEEEcCccCcCcccHHHHHHHHHh--cCCeeeeecCc----ccCcccchHHHHHhhh--cCcEEEEEeeccccc
Q 031331            9 SAQSKYDVFLSFRGEDTRDNFTSHLHAAFC--RKNIKTFIDEE----LSRGDEISQAVLNAMK--GSKISVIIFSKRYAS   80 (161)
Q Consensus         9 ~~~~~ydVFISy~~~D~r~~fv~~L~~~L~--~~gi~~f~d~~----~~~G~~i~~~i~~aI~--~S~~~Ivv~S~~y~~   80 (161)
                      ...+.||+=+||.|+-  ..+|+....+++  ..-+..|+|-.    +-+|+ +. .++.-+.  .|+..+|.+..||..
T Consensus       173 ~~~~~~DiG~SFaGEA--R~LVEqV~~E~~~~~~p~~~FYD~~~~~~L~~~s-L~-~~L~~~Y~~rC~~~~VF~~~~Y~~  248 (329)
T COG4916         173 SSEKPVDSGISFAGEA--RNLVEQVQTEHSGLDIPTRRFYDLLVAHPLYPGS-LV-STLDPGYDIRCVVTTVFNTGSYIC  248 (329)
T ss_pred             ccccccceeeEeehhh--hhHHHHHHHhhhcccCCceeeeechhhccccCcc-HH-HhcccccCceEEEEEEEeCCceEE
Confidence            3467899999999996  479999999998  33455677754    34443 22 3333333  577788888999999


Q ss_pred             ChhhHHHHHHHHHHHhhCCceeeeEEe-ecCcccc
Q 031331           81 SKWCLDELVEILECKNMNGQTVVPVFY-QVDPSDV  114 (161)
Q Consensus        81 S~wc~~El~~~~~~~~~~~~~viPIfy-~v~p~~v  114 (161)
                      ..||.-|...+-.-.  .-....||.| .++.+-+
T Consensus       249 K~~c~~E~~~~r~~~--~~d~~~rI~~~~~d~~a~  281 (329)
T COG4916         249 KSTCHIEGLEGRLNP--ILDTGFRIKYLYADNIAI  281 (329)
T ss_pred             eeeeccchhhccccc--cccccceEEEEecCCccc
Confidence            999999977653221  1235667766 3444443

>COG4271 Predicted nucleotide-binding protein containing TIR -like domain [Transcription]

Probab=89.67  E-value=1.1  Score=35.16  Aligned_cols=97  Identities=15%  Similarity=0.156  Sum_probs=65.8

Q ss_pred             cEEEcCccCcCcccHHHHHHHHHhc-C-CeeeeecCcccCcccchHHHHHhhhcCcEEEEEeecccc--------cC---
Q 031331           15 DVFLSFRGEDTRDNFTSHLHAAFCR-K-NIKTFIDEELSRGDEISQAVLNAMKGSKISVIIFSKRYA--------SS---   81 (161)
Q Consensus        15 dVFISy~~~D~r~~fv~~L~~~L~~-~-gi~~f~d~~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~--------~S---   81 (161)
                      .|||-|+++    ..+.....+|.+ . =..+|.|.-+..|..+.+.+.+-|.++..+|++.+|+=.        ..   
T Consensus        84 kvFvv~ghd----~iArael~allrd~~l~~vi~d~~~~~g~~ile~lek~i~~v~FAi~latPDDkgy~~~~~~~k~~p  159 (233)
T COG4271          84 KVFVVSGHD----AIARAELEALLRDWKLEPVILDGLFSEGQTILESLEKYIAEVKFAIVLATPDDKGYRAVHSREKAFP  159 (233)
T ss_pred             eEEEEeccH----HHHHHHHHHHhhccccceEEecCcccccHHHHHHHHHHhhhceEEEEEecCcccccccccchhhccc
Confidence            899999765    367666667763 2 345677776889999999999999999999999999844        11   


Q ss_pred             ---hhhHHHHHHHHHHHhhCCceeeeEEee----cCccccccc
Q 031331           82 ---KWCLDELVEILECKNMNGQTVVPVFYQ----VDPSDVRNQ  117 (161)
Q Consensus        82 ---~wc~~El~~~~~~~~~~~~~viPIfy~----v~p~~v~~~  117 (161)
                         .....||...+-..  ++.+|+-+.-+    --|||+...
T Consensus       160 raRqNVifELGm~mgrL--gRkrv~Il~k~~envelPSDi~Gv  200 (233)
T COG4271         160 RARQNVIFELGMFMGRL--GRKRVMILMKRDENVELPSDIAGV  200 (233)
T ss_pred             cccccchhhHhhHHhhc--ccceEEEEecccccccCccccCce
Confidence               22566777766543  23344433321    246666543

>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2

Probab=89.20  E-value=3.2  Score=28.80  Aligned_cols=66  Identities=12%  Similarity=0.091  Sum_probs=49.7

Q ss_pred             ccHHHHHHHHHhcCCeeeeecCc--cc-------CcccchHHHHHhhhcCcEEEEEeecccccChhhHHHHHHHHH
Q 031331           27 DNFTSHLHAAFCRKNIKTFIDEE--LS-------RGDEISQAVLNAMKGSKISVIIFSKRYASSKWCLDELVEILE   93 (161)
Q Consensus        27 ~~fv~~L~~~L~~~gi~~f~d~~--~~-------~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~El~~~~~   93 (161)
                      ..+...+.+.|+.+|+.+|...+  ..       ....|.+.-.++|++|+++|+++...- .+.-+..|+..+..
T Consensus        13 ~~~~~~~~~~L~~~g~~v~~P~~~~~~~~~~~~~~~~~i~~~d~~~i~~~D~via~l~~~~-~d~Gt~~ElG~A~a   87 (113)
T PF05014_consen   13 KARVERLREALEKNGFEVYSPQDNDENDEEDSQEWAREIFERDLEGIRECDIVIANLDGFR-PDSGTAFELGYAYA   87 (113)
T ss_dssp             HHHHHHHHHHHHTTTTEEEGGCTCSSS--TTSHHCHHHHHHHHHHHHHHSSEEEEEECSSS---HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCEEEeccccccccccccchHHHHHHHHHHHHHHHCCEEEEECCCCC-CCCcHHHHHHHHHH
Confidence            57889999999999999987553  21       223455566789999999999998766 55678889988765

4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....

>PF14258 DUF4350: Domain of unknown function (DUF4350)

Probab=85.76  E-value=5.3  Score=25.22  Aligned_cols=61  Identities=13%  Similarity=0.121  Sum_probs=38.6

Q ss_pred             HHHHHHHhcCCeeeeecCcccCcccchHHHHHhhhcCcEEEEEeecccccChhhHHHHHHHHHHHhhCCceee
Q 031331           31 SHLHAAFCRKNIKTFIDEELSRGDEISQAVLNAMKGSKISVIIFSKRYASSKWCLDELVEILECKNMNGQTVV  103 (161)
Q Consensus        31 ~~L~~~L~~~gi~~f~d~~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~El~~~~~~~~~~~~~vi  103 (161)
                      ..|+..|++.|+.+=....          ..+++....-++++++|.+.-+.  -.++..+.+..+.++..||
T Consensus         8 ~a~~~~L~~~g~~v~~~~~----------~~~~l~~~~~tll~i~~~~~~~~--~~~~~~l~~~v~~G~~lvl   68 (70)
T PF14258_consen    8 YALYQLLEEQGVKVERWRK----------PYEALEADDGTLLVIGPDLRLSE--PEEAEALLEWVEAGNTLVL   68 (70)
T ss_pred             HHHHHHHHHCCCeeEEecc----------cHHHhCCCCCEEEEEeCCCCCCc--hHHHHHHHHHHHcCCEEEE
Confidence            4577788888988843221          12344557889999999966554  3555555565555555554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	161
3ozi_A	204	Crystal Structure Of The Tir Domain From The Flax D		2e-31
3jrn_A	176	Crystal Structure Of Tir Domain From Arabidopsis Th		6e-31
3h16_A	154	Crystal Structure Of A Bacteria Tir Domain, Pdtir F		6e-04

>pdb|3OZI|A Chain A, Crystal Structure Of The Tir Domain From The Flax Disease Resistance Protein L6 Length = 204

Iteration: 1
 Score =  131 bits (329), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 67/146 (45%), Positives = 93/146 (63%), Gaps = 4/146 (2%)
Query: 13  KYDVFLSFRGEDTRDNFTSHLHAAFCRKNIKTF-IDEELSRGDEISQAVLNAMKGSKISV 71
           +Y+VFLSFRG DTR+ FT  L+ +  R  I TF  D+EL +G EI   +L A+  SKI V
Sbjct: 35  EYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYV 94
Query: 72  IIFSKRYASSKWCLDELVEILECKNMNGQTVV-PVFYQVDPSDVRNQTGCFADAFVEHEE 130
            I S  YA SKWCL EL EI+  +  + + ++ P+FY VDPSDVR+QTGC+  AF +H  
Sbjct: 95  PIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHAN 154
Query: 131 QFKNMPEKVQIWRAVLTEASNLSGWY 156
           +F    + +Q W+  L +  +L GW+
Sbjct: 155 KFDG--QTIQNWKDALKKVGDLKGWH 178

>pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis Thaliana Length = 176

Iteration: 1
 Score =  129 bits (325), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 66/143 (46%), Positives = 92/143 (64%), Gaps = 3/143 (2%)
Query: 13  KYDVFLSFRGEDTRDNFTSHLHAAFCRKNIKTFIDE-ELSRGDEISQAVLNAMKGSKISV 71
           KYDVFLSFRG DTR NF S L+    R++I+TF D+ EL  G   S  + + ++ S+ +V
Sbjct: 8   KYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAV 67
Query: 72  IIFSKRYASSKWCLDELVEILECKNMNGQTVVPVFYQVDPSDVRNQTGCFADAFVEHEEQ 131
           ++ S+ YA+S WCLDELV I++ +     TV+P+FY V+P+ VR QTG  A+ F +H   
Sbjct: 68  VVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHAS- 126
Query: 132 FKNMPEKVQIWRAVLTEASNLSG 154
            +  PEKV  WR  LT  + LSG
Sbjct: 127 -REDPEKVLKWRQALTNFAQLSG 148

>pdb|3H16|A Chain A, Crystal Structure Of A Bacteria Tir Domain, Pdtir From Paracoccus Denitrificans Length = 154

Iteration: 1
 Score = 40.0 bits (92), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 21/110 (19%), Positives = 50/110 (45%)
Query: 14  YDVFLSFRGEDTRDNFTSHLHAAFCRKNIKTFIDEELSRGDEISQAVLNAMKGSKISVII 73
           +D+F+S   ED  D   +  H          + D  L  GD + +++   +  S+  +++
Sbjct: 21  HDIFISHAWEDKADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVV 80
Query: 74  FSKRYASSKWCLDELVEILECKNMNGQTVVPVFYQVDPSDVRNQTGCFAD 123
            S  +   +W   EL  + + ++     ++P++++V   +V + +   AD
Sbjct: 81  LSTHFFKKEWPQKELDGLFQLESSGRSRILPIWHKVSKDEVASFSPTMAD 130

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	161
3jrn_A	176	AT1G72930 protein; TIR domain arabidopsis thaliana	4e-91
3ozi_A	204	L6TR; plant TIR domain, plant protein; 2.30A {Linu	4e-89
3h16_A	154	TIR protein; bacteria TIR domain, signaling protei	9e-74
3ub2_A	146	TOLL/interleukin-1 receptor domain-containing ADA	2e-15
1t3g_A	159	X-linked interleukin-1 receptor accessory protein-	2e-07
2j67_A	178	TOLL like receptor 10; TIR, IL-1, TLR10, membrane,	5e-06

>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana} Length = 176

 Score =  261 bits (670), Expect = 4e-91
 Identities = 69/158 (43%), Positives = 98/158 (62%), Gaps = 8/158 (5%)

Query: 1   MASSSRSHSAQSKYDVFLSFRGEDTRDNFTSHLHAAFCRKNIKTFID-EELSRGDEISQA 59
           M+S +      +KYDVFLSFRG DTR NF S L+    R++I+TF D +EL  G   S  
Sbjct: 1   MSSHT-----ATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPE 55

Query: 60  VLNAMKGSKISVIIFSKRYASSKWCLDELVEILECKNMNGQTVVPVFYQVDPSDVRNQTG 119
           + + ++ S+ +V++ S+ YA+S WCLDELV I++ +     TV+P+FY V+P+ VR QTG
Sbjct: 56  LKSPIEVSRFAVVVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTG 115

Query: 120 CFADAFVEHEEQFKNMPEKVQIWRAVLTEASNLSGWYS 157
             A+ F +H  +    PEKV  WR  LT  + LSG  S
Sbjct: 116 VLAEQFKKHASRED--PEKVLKWRQALTNFAQLSGDCS 151

>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum} Length = 204

 Score =  257 bits (659), Expect = 4e-89
 Identities = 67/162 (41%), Positives = 96/162 (59%), Gaps = 4/162 (2%)

Query: 2   ASSSRSHSAQSKYDVFLSFRGEDTRDNFTSHLHAAFCRKNIKTFID-EELSRGDEISQAV 60
           +++        +Y+VFLSFRG DTR+ FT  L+ +  R  I TF D +EL +G EI   +
Sbjct: 24  STNPSGSFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNL 83

Query: 61  LNAMKGSKISVIIFSKRYASSKWCLDELVEILECKNMNG-QTVVPVFYQVDPSDVRNQTG 119
           L A+  SKI V I S  YA SKWCL EL EI+  +  +  + ++P+FY VDPSDVR+QTG
Sbjct: 84  LRAIDQSKIYVPIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTG 143

Query: 120 CFADAFVEHEEQFKNMPEKVQIWRAVLTEASNLSGWYSMNTR 161
           C+  AF +H  +F    + +Q W+  L +  +L GW+     
Sbjct: 144 CYKKAFRKHANKFD--GQTIQNWKDALKKVGDLKGWHIGKND 183

>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222} Length = 154

 Score =  216 bits (553), Expect = 9e-74
 Identities = 21/146 (14%), Positives = 63/146 (43%), Gaps = 4/146 (2%)

Query: 2   ASSSRSHSAQSKYDVFLSFRGEDTRDNFTSHLHAAFCRKNIKTFIDE-ELSRGDEISQAV 60
            +++   ++   +D+F+S   ED + +F   L         + + D+  L  GD + +++
Sbjct: 9   PTTNADLTSAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSI 67

Query: 61  LNAMKGSKISVIIFSKRYASSKWCLDELVEILECKNMNGQTVVPVFYQVDPSDVRNQTGC 120
              +  S+  +++ S  +   +W   EL  + + ++     ++P++++V   +V + +  
Sbjct: 68  DKGLGSSRFGIVVLSTHFFKKEWPQKELDGLFQLESSGRSRILPIWHKVSKDEVASFSPT 127

Query: 121 FADAFVEHEEQFKNMPEKVQIWRAVL 146
            AD    +        +++      +
Sbjct: 128 MADKLAFNTSTKS--VDEIVADLMAI 151

>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A Length = 146

 Score = 67.8 bits (166), Expect = 2e-15
 Identities = 18/113 (15%), Positives = 42/113 (37%), Gaps = 5/113 (4%)

Query: 6   RSHSAQSKYDVFLSFRGEDTR--DNFTSHLHAAFCRKNIKTFIDE-ELSRGDEISQAVLN 62
            S      YDV +    ED     +  S+L  +    +++ F+   + + G  I   +  
Sbjct: 3   GSSRWSKDYDVCVCHSEEDLVAAQDLVSYLEGS--TASLRCFLQLRDATPGGAIVSELCQ 60

Query: 63  AMKGSKISVIIFSKRYASSKWCLDELVEILECKNMNGQTVVPVFYQVDPSDVR 115
           A+  S   V++ +  +    WC  ++++ L          +P+   +  +   
Sbjct: 61  ALSSSHCRVLLITPGFLQDPWCKYQMLQALTEAPGAEGCTIPLLSGLSRAAYP 113

>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens} Length = 159

 Score = 47.0 bits (111), Expect = 2e-07
 Identities = 20/119 (16%), Positives = 33/119 (27%), Gaps = 14/119 (11%)

Query: 13  KYDVFLSFRGEDTRDNFTSHLHAAF-----------CRKNIKTFIDE-ELSRGDEISQAV 60
            YD +LS+   D                             K FI + +L       + V
Sbjct: 2   DYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDV 61

Query: 61  LNAMKGSKISVIIFSKRYA-SSKWCLDELVEIL-ECKNMNGQTVVPVFYQVDPSDVRNQ 117
              +  SK  +I+ +  Y     W + EL   L          V+ +        +  Q
Sbjct: 62  ARCVDQSKRLIIVMTPNYVVRRGWSIFELETRLRNMLVTGEIKVILIECSELRGIMNYQ 120

>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A Length = 178

 Score = 43.4 bits (102), Expect = 5e-06
 Identities = 16/104 (15%), Positives = 41/104 (39%), Gaps = 7/104 (6%)

Query: 13  KYDVFLSFRGEDT---RDNFTSHLHAAFCRKNIKTFIDEE-LSRGDEISQAVLNAMKGSK 68
           ++  F+S+   D+   ++    +L       +I   + E     G  IS+ +++ ++ S 
Sbjct: 35  RFHAFISYSEHDSLWVKNELIPNLEKE--DGSILICLYESYFDPGKSISENIVSFIEKSY 92

Query: 69  ISVIIFSKRYASSKWCLDELVEILECKNMNGQ-TVVPVFYQVDP 111
            S+ + S  +  ++WC  E               ++ +  +  P
Sbjct: 93  KSIFVLSPNFVQNEWCHYEFYFAHHNLFHENSDHIILILLEPIP 136

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	161
3ozi_A	204	L6TR; plant TIR domain, plant protein; 2.30A {Linu	100.0
3jrn_A	176	AT1G72930 protein; TIR domain arabidopsis thaliana	100.0
3h16_A	154	TIR protein; bacteria TIR domain, signaling protei	100.0
3ub2_A	146	TOLL/interleukin-1 receptor domain-containing ADA	99.96
2js7_A	160	Myeloid differentiation primary response protein M	99.93
1fyx_A	149	TOLL-like receptor 2; beta-alpha-beta fold, signal	99.93
2j67_A	178	TOLL like receptor 10; TIR, IL-1, TLR10, membrane,	99.92
1t3g_A	159	X-linked interleukin-1 receptor accessory protein-	99.92
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.77
1eiw_A	111	Hypothetical protein MTH538; CHEY-like fold, flavo	98.34
3hyn_A	189	Putative signal transduction protein; DUF1863 fami	97.01
2f62_A	161	Nucleoside 2-deoxyribosyltransferase; SGPP, struct	92.24
2khz_A	165	C-MYC-responsive protein RCL; flexible loop, nucle	88.93
4fyk_A	152	Deoxyribonucleoside 5'-monophosphate N-glycosidas;	82.34

>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}

Probab=100.00  E-value=2e-54  Score=335.25  Aligned_cols=152  Identities=43%  Similarity=0.786  Sum_probs=141.1

Q ss_pred             CCCCCCcccEEEcCccCcCcccHHHHHHHHHhcCCeeeeecCc-ccCcccchHHHHHhhhcCcEEEEEeecccccChhhH
Q 031331            7 SHSAQSKYDVFLSFRGEDTRDNFTSHLHAAFCRKNIKTFIDEE-LSRGDEISQAVLNAMKGSKISVIIFSKRYASSKWCL   85 (161)
Q Consensus         7 s~~~~~~ydVFISy~~~D~r~~fv~~L~~~L~~~gi~~f~d~~-~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~   85 (161)
                      ++++.++|||||||+++|+|+.|++||+++|+++||++|+|++ +.+|+.|.++|.+||++|+++|+|||+||+.|+||+
T Consensus        29 ~~~~~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~S~WCl  108 (204)
T 3ozi_A           29 GSFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKWCL  108 (204)
T ss_dssp             -----CCCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGGCHHHH
T ss_pred             CCCCCcCCeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccccCcHHH
Confidence            4457899999999999999999999999999999999999976 999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhh-CCceeeeEEeecCcccccccccchHHHHHHHHHhcCCChHHHHHHHHHHHHhhcccceeecCC
Q 031331           86 DELVEILECKNM-NGQTVVPVFYQVDPSDVRNQTGCFADAFVEHEEQFKNMPEKVQIWRAVLTEASNLSGWYSMNT  160 (161)
Q Consensus        86 ~El~~~~~~~~~-~~~~viPIfy~v~p~~v~~~~~~f~~~f~~~~~~~~~~~~~~~~W~~al~~v~~~~G~~~~~~  160 (161)
                      +||++|++|.++ ++++||||||+|+|++||+|+|.||++|++|++++.  ++++++||.||++||+++||++.++
T Consensus       109 ~EL~~I~e~~~~~~~~~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~~~--~~~v~~Wr~AL~~va~lsG~~~~~~  182 (204)
T 3ozi_A          109 MELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKFD--GQTIQNWKDALKKVGDLKGWHIGKN  182 (204)
T ss_dssp             HHHHHHHHHHHHCTTSEECCEEESSCHHHHHHTCTTHHHHHHHHTTTSC--HHHHHHHHHHHHHHHTSCBEEECTT
T ss_pred             HHHHHHHHHHHhcCCeeeEEEEeecCHHHHHhccccHHHHHHHHHHhhC--HHHHHHHHHHHHHHhccCceecCCC
Confidence            999999999875 688999999999999999999999999999998874  7899999999999999999999775

>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}

Probab=100.00  E-value=6.4e-54  Score=326.67  Aligned_cols=147  Identities=45%  Similarity=0.780  Sum_probs=127.6

Q ss_pred             CCCcccEEEcCccCcCcccHHHHHHHHHhcCCeeeeecCc-ccCcccchHHHHHhhhcCcEEEEEeecccccChhhHHHH
Q 031331           10 AQSKYDVFLSFRGEDTRDNFTSHLHAAFCRKNIKTFIDEE-LSRGDEISQAVLNAMKGSKISVIIFSKRYASSKWCLDEL   88 (161)
Q Consensus        10 ~~~~ydVFISy~~~D~r~~fv~~L~~~L~~~gi~~f~d~~-~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~El   88 (161)
                      .+++|||||||+++|+|+.|++||+++|+++||++|+|++ +.+|+.|.++|.+||++|+++|+|||+||++|+||++||
T Consensus         5 ~~~~yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl~EL   84 (176)
T 3jrn_A            5 TATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDEL   84 (176)
T ss_dssp             --CCEEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHHHHHH
T ss_pred             CCCCCeEEEECcCcccChHHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHHHHH
Confidence            3688999999999999999999999999999999999977 999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhCCceeeeEEeecCcccccccccchHHHHHHHHHhcCCChHHHHHHHHHHHHhhcccceeec
Q 031331           89 VEILECKNMNGQTVVPVFYQVDPSDVRNQTGCFADAFVEHEEQFKNMPEKVQIWRAVLTEASNLSGWYSM  158 (161)
Q Consensus        89 ~~~~~~~~~~~~~viPIfy~v~p~~v~~~~~~f~~~f~~~~~~~~~~~~~~~~W~~al~~v~~~~G~~~~  158 (161)
                      ++|++|.+.++++||||||+|+|++|++|+|.||++|.+|+++  .+.+++++||.||++|++++||++.
T Consensus        85 ~~i~~~~~~~~~~ViPIfy~V~ps~Vr~q~g~fg~af~~~~~~--~~~~~~~~Wr~AL~~va~~~G~~~~  152 (176)
T 3jrn_A           85 VTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASR--EDPEKVLKWRQALTNFAQLSGDCSG  152 (176)
T ss_dssp             HHHHHHHHTTSCEEEEEECSSCHHHHHHTCTHHHHHHHHHHTT--SCHHHHHHHHHHHHHHTTSCCEECC
T ss_pred             HHHHhhhccCCCEEEEEEecCCHHHhhhccCcHHHHHHHHHhc--cCHHHHHHHHHHHHHHhcccceecC
Confidence            9999999889999999999999999999999999999999988  4689999999999999999999984

>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}

Probab=100.00  E-value=2.4e-37  Score=230.54  Aligned_cols=135  Identities=18%  Similarity=0.356  Sum_probs=118.7

Q ss_pred             CCCCcccEEEcCccCcCcccHHHHHHHHHhcCCeeeeecCc-ccCcccchHHHHHhhhcCcEEEEEeecccccChhhHHH
Q 031331            9 SAQSKYDVFLSFRGEDTRDNFTSHLHAAFCRKNIKTFIDEE-LSRGDEISQAVLNAMKGSKISVIIFSKRYASSKWCLDE   87 (161)
Q Consensus         9 ~~~~~ydVFISy~~~D~r~~fv~~L~~~L~~~gi~~f~d~~-~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~E   87 (161)
                      .+.++|||||||+++| +..|+.+|+.+|+++|+++|+|++ +.+|+.|.++|.++|++|+++|+|+|++|++|.||++|
T Consensus        16 ~~~~~~dvFISy~~~D-~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~E   94 (154)
T 3h16_A           16 TSAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQKE   94 (154)
T ss_dssp             --CCSEEEEEEEEGGG-TTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHHH
T ss_pred             CCCCCceEEEECcccC-hHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHHH
Confidence            4578999999999999 678999999999999999999987 99999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhCCceeeeEEeecCcccccccccchHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 031331           88 LVEILECKNMNGQTVVPVFYQVDPSDVRNQTGCFADAFVEHEEQFKNMPEKVQIWRAVLTEA  149 (161)
Q Consensus        88 l~~~~~~~~~~~~~viPIfy~v~p~~v~~~~~~f~~~f~~~~~~~~~~~~~~~~W~~al~~v  149 (161)
                      |..++++...++.+||||||+++|++|++|.|.|++.|.....     ...+.++-..|.++
T Consensus        95 l~~~~~~~~~~~~~iiPV~~~v~p~~v~~~~~~~~~~~~~~~~-----~~~~~~ia~~l~~l  151 (154)
T 3h16_A           95 LDGLFQLESSGRSRILPIWHKVSKDEVASFSPTMADKLAFNTS-----TKSVDEIVADLMAI  151 (154)
T ss_dssp             HHHHTCCCTTSCCCEEEEEESCCTGGGTTTCCCCCSSCCEETT-----TSCHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCEEEEEEecCCHHHHhhCCccHHHHHhhhcC-----cccHHHHHHHHHHH
Confidence            9999998777788999999999999999999999988854432     23455555555554

>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A

Probab=99.96  E-value=1.3e-31  Score=198.43  Aligned_cols=130  Identities=15%  Similarity=0.261  Sum_probs=93.4

Q ss_pred             CCCCCcccEEEcCccCcCcccHHHHHHHHHhc--CCeeeeecCc-ccCcccchHHHHHhhhcCcEEEEEeecccccChhh
Q 031331            8 HSAQSKYDVFLSFRGEDTRDNFTSHLHAAFCR--KNIKTFIDEE-LSRGDEISQAVLNAMKGSKISVIIFSKRYASSKWC   84 (161)
Q Consensus         8 ~~~~~~ydVFISy~~~D~r~~fv~~L~~~L~~--~gi~~f~d~~-~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wc   84 (161)
                      ...++.|||||||+++|+  .||.+|..+|++  .|+++|++++ +.||+.+.++|.++|++|+++|+|+|+||++|.||
T Consensus         5 ~r~~k~YDvFISy~~~D~--~~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~wc   82 (146)
T 3ub2_A            5 SRWSKDYDVCVCHSEEDL--VAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPWC   82 (146)
T ss_dssp             CTTSSSEEEEEECCGGGH--HHHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHHCHHH
T ss_pred             CCCCCcceEEEeCChhhH--HHHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccCHHH
Confidence            445789999999999995  689999999998  5999999877 99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhCCceeeeEEeecCcccccccccc--------hHHHHHHHHHhcCCChHHHHHHHHHH
Q 031331           85 LDELVEILECKNMNGQTVVPVFYQVDPSDVRNQTGC--------FADAFVEHEEQFKNMPEKVQIWRAVL  146 (161)
Q Consensus        85 ~~El~~~~~~~~~~~~~viPIfy~v~p~~v~~~~~~--------f~~~f~~~~~~~~~~~~~~~~W~~al  146 (161)
                      +.|+..++++......+||||||+++++++....+.        ....|.++       .+.|.+|+.||
T Consensus        83 ~~El~~al~~~~~~~~~vIpv~~~v~~~~lp~~Lr~~~~id~~~~d~~f~~l-------~~~v~~~~~~~  145 (146)
T 3ub2_A           83 KYQMLQALTEAPGAEGCTIPLLSGLSRAAYPPELRFMYYVDGRGPDGGFRQV-------KEAVMRYLQTL  145 (146)
T ss_dssp             HHHHHHHHHTSSSSSSEEEEEECSCCGGGSCGGGGGSCCEETTSGGGGHHHH-------HHHHHHHHTTC
T ss_pred             HHHHHHHHHHHhhcCCcEEEEEcCCChhhCCHHHhCeeeeeccChHhhHHHH-------HHHHHHHHHhc
Confidence            999999998863344478899999987766543221        12333333       46778888875

>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A

Probab=99.93  E-value=1.4e-26  Score=173.57  Aligned_cols=101  Identities=15%  Similarity=0.278  Sum_probs=90.3

Q ss_pred             CCCCcccEEEcCccCcCcccHHHHHHHHHhcC--CeeeeecCc-ccCcccchHHHHHhhh-cCcEEEEEeecccccChhh
Q 031331            9 SAQSKYDVFLSFRGEDTRDNFTSHLHAAFCRK--NIKTFIDEE-LSRGDEISQAVLNAMK-GSKISVIIFSKRYASSKWC   84 (161)
Q Consensus         9 ~~~~~ydVFISy~~~D~r~~fv~~L~~~L~~~--gi~~f~d~~-~~~G~~i~~~i~~aI~-~S~~~Ivv~S~~y~~S~wc   84 (161)
                      +.++.|||||||+++|  ..||.+|..+|+++  |+++|++++ +.||+.+.++|.++|+ +|+++|+|+|++|++|.||
T Consensus        12 ~~~~~yDvFISys~~D--~~fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~wc   89 (160)
T 2js7_A           12 HMPERFDAFICYCPSD--IQFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKEC   89 (160)
T ss_dssp             CCTTCEEEEEECCGGG--HHHHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHHH
T ss_pred             CCCcceEEEEEccccc--HHHHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHHH
Confidence            3467899999999999  48999999999984  699999877 9999999999999999 7999999999999999999


Q ss_pred             HHHHHHHHHHH-hhCCceeeeEEeecCc
Q 031331           85 LDELVEILECK-NMNGQTVVPVFYQVDP  111 (161)
Q Consensus        85 ~~El~~~~~~~-~~~~~~viPIfy~v~p  111 (161)
                      +.|+..|+++. .+++.+||||+|+.-+
T Consensus        90 ~~El~~a~~~~~~~~~~~vIpV~~~~~~  117 (160)
T 2js7_A           90 DFQTKFALSLSPGAHQKRLIPIKYKAMK  117 (160)
T ss_dssp             HHHHHHHHHHCTTHHHHTEEEEESSCCC
T ss_pred             HHHHHHHHHHHHccCCCEEEEEEEcccc
Confidence            99999999874 4456799999997544

>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A

Probab=99.93  E-value=3.9e-27  Score=174.61  Aligned_cols=104  Identities=15%  Similarity=0.316  Sum_probs=92.3

Q ss_pred             CCCcccEEEcCccCcCcccHHHH-HHHHHhcC--CeeeeecCc-ccCcccchHHHHHhhhcCcEEEEEeecccccChhhH
Q 031331           10 AQSKYDVFLSFRGEDTRDNFTSH-LHAAFCRK--NIKTFIDEE-LSRGDEISQAVLNAMKGSKISVIIFSKRYASSKWCL   85 (161)
Q Consensus        10 ~~~~ydVFISy~~~D~r~~fv~~-L~~~L~~~--gi~~f~d~~-~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~   85 (161)
                      .++.|||||||+++|.  .||.+ |..+|++.  |+++|+|++ +.+|+.+.++|.++|++|+++|+|+||+|++|.||+
T Consensus         2 ~~~~yDvFiSy~~~D~--~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~   79 (149)
T 1fyx_A            2 RNIXYDAFVSYSERDA--YWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXK   79 (149)
T ss_dssp             CSCCEEEEEECCGGGH--HHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHH
T ss_pred             CCccceEEEECCcccH--HHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHH
Confidence            3678999999999995  79986 99999986  999999887 999999999999999999999999999999999999


Q ss_pred             HHHHHHHHH-HhhCCceeeeEEee-cCccccc
Q 031331           86 DELVEILEC-KNMNGQTVVPVFYQ-VDPSDVR  115 (161)
Q Consensus        86 ~El~~~~~~-~~~~~~~viPIfy~-v~p~~v~  115 (161)
                      .|+..++++ ..+++.+||||||+ +++..+.
T Consensus        80 ~El~~a~~~~~~~~~~~vIpv~~~~i~~~~~p  111 (149)
T 1fyx_A           80 YELDFSHFRLFDENNDAAILILLEPIEKKAIP  111 (149)
T ss_dssp             HHSCCSCCTTCGGGTTCCEEEESSCCCTTTSC
T ss_pred             HHHHHHHHHHHhcCCCEEEEEEecCCChhhcC
Confidence            999998853 45667899999995 5555554

>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A

Probab=99.92  E-value=1.6e-26  Score=176.07  Aligned_cols=107  Identities=15%  Similarity=0.326  Sum_probs=89.2

Q ss_pred             CCCCCcccEEEcCccCcCcccHHHH-HHHHHhc--CCeeeeecCc-ccCcccchHHHHHhhhcCcEEEEEeecccccChh
Q 031331            8 HSAQSKYDVFLSFRGEDTRDNFTSH-LHAAFCR--KNIKTFIDEE-LSRGDEISQAVLNAMKGSKISVIIFSKRYASSKW   83 (161)
Q Consensus         8 ~~~~~~ydVFISy~~~D~r~~fv~~-L~~~L~~--~gi~~f~d~~-~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~w   83 (161)
                      ...++.|||||||+++|.  .||.. |..+|++  +|+++|++++ +.||+.+.++|.++|++|+++|+|+||+|++|.|
T Consensus        30 ~~~~~~yDvFISys~~D~--~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~w  107 (178)
T 2j67_A           30 LKRNVRFHAFISYSEHDS--LWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEW  107 (178)
T ss_dssp             CCCSCCEEEEEECCGGGH--HHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHTG
T ss_pred             cCCCccceEEEECCCCCH--HHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccch
Confidence            456789999999999994  89975 9999998  8999999877 9999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHH-HhhCCceeeeEEee-cCcccccc
Q 031331           84 CLDELVEILEC-KNMNGQTVVPVFYQ-VDPSDVRN  116 (161)
Q Consensus        84 c~~El~~~~~~-~~~~~~~viPIfy~-v~p~~v~~  116 (161)
                      |+.|+..++++ .++++.+||||||+ +.+.++..
T Consensus       108 c~~El~~a~~~~~~~~~~~vIpV~~~~i~~~~lp~  142 (178)
T 2j67_A          108 CHYEFYFAHHNLFHENSDHIILILLEPIPFYCIPT  142 (178)
T ss_dssp             GGTHHHHTTCC-------CEEEEESSCCCGGGSCT
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEEEecCCChHHCCh
Confidence            99999999864 45567899999996 44444443

>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}

Probab=99.92  E-value=1e-25  Score=168.75  Aligned_cols=101  Identities=20%  Similarity=0.284  Sum_probs=89.2

Q ss_pred             CcccEEEcCccCcC---------cccHHHHHHH-HHh-cCCeeeeecCc-ccCcccchHHHHHhhhcCcEEEEEeecccc
Q 031331           12 SKYDVFLSFRGEDT---------RDNFTSHLHA-AFC-RKNIKTFIDEE-LSRGDEISQAVLNAMKGSKISVIIFSKRYA   79 (161)
Q Consensus        12 ~~ydVFISy~~~D~---------r~~fv~~L~~-~L~-~~gi~~f~d~~-~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~   79 (161)
                      +.|||||||+++|.         ++.||.+|.. .|+ +.|+++|++++ +.||+.+.++|.++|++|+.+|+|+|+||+
T Consensus         1 k~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~   80 (159)
T 1t3g_A            1 KDYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYV   80 (159)
T ss_dssp             CCBSEEEECCCCC-------CCSHHHHHHTHHHHHHHHTSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHH
T ss_pred             CCceEEEeCccccchhhhccchhhHHHHHHHHHHHHcCCCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchh
Confidence            47999999999996         3679988665 699 79999999877 999999999999999999999999999997


Q ss_pred             -cChhhHHHHHHHHHHH-hhCCceeeeEEeecCcc
Q 031331           80 -SSKWCLDELVEILECK-NMNGQTVVPVFYQVDPS  112 (161)
Q Consensus        80 -~S~wc~~El~~~~~~~-~~~~~~viPIfy~v~p~  112 (161)
                       .|.||+.|+..++++. .+++.+||||+|...+.
T Consensus        81 ~~S~wc~~El~~a~~~~~~~~~~~vI~I~~~~~~~  115 (159)
T 1t3g_A           81 VRRGWSIFELETRLRNMLVTGEIKVILIECSELRG  115 (159)
T ss_dssp             HTTTTHHHHHSHHHHHHHHTTSSEEEEEECSCCCS
T ss_pred             hcChHHHHHHHHHHHHHHhcCCCEEEEEEeccccc
Confidence             9999999999999875 56788999999875443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.77  E-value=1.7e-19  Score=163.12  Aligned_cols=101  Identities=17%  Similarity=0.296  Sum_probs=90.0

Q ss_pred             CCCCcccEEEcCccCcCcccHH-HHHHHHHhc-----CCeeeeecCc-ccCcccchHHHHHhhhcCcEEEEEeecccccC
Q 031331            9 SAQSKYDVFLSFRGEDTRDNFT-SHLHAAFCR-----KNIKTFIDEE-LSRGDEISQAVLNAMKGSKISVIIFSKRYASS   81 (161)
Q Consensus         9 ~~~~~ydVFISy~~~D~r~~fv-~~L~~~L~~-----~gi~~f~d~~-~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S   81 (161)
                      ...++|||||||+++|.  .|| ..|...|+.     .|+++|++++ +.||+.+.++|.++|++||++|+|+|++|+.|
T Consensus       666 ~~~~~yd~fisy~~~d~--~~v~~~l~~~Le~~~~~~~~~~~~~~~rd~~~G~~~~~~i~~~i~~sr~~i~vls~~~~~s  743 (844)
T 3j0a_A          666 PDMYKYDAYLCFSSKDF--TWVQNALLKHLDTQYSDQNRFNLCFEERDFVPGENRIANIQDAIWNSRKIVCLVSRHFLRD  743 (844)
T ss_dssp             SSCCCCSEEEECCSTTH--HHHHHTHHHHHHSTTTTTTCSCEECSSSSCCSSSCHHHHHHHHHHHSSEEEEEECTTHHHH
T ss_pred             ccceeccEEEEeeCCcH--HHHHHHHHHHHhhccccCCceEEEEEccccCCCchHHHHHHHHHHHhCeEEEEeccccccC
Confidence            35679999999999994  787 779999985     5899999887 99999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHH-hhCCceeeeEEeecCc
Q 031331           82 KWCLDELVEILECK-NMNGQTVVPVFYQVDP  111 (161)
Q Consensus        82 ~wc~~El~~~~~~~-~~~~~~viPIfy~v~p  111 (161)
                      +||..|+..++.+. ++++.+||||||+..|
T Consensus       744 ~wc~~e~~~a~~~~~~~~~~~~i~i~~~~~~  774 (844)
T 3j0a_A          744 GWCLEAFSYAQGRCLSDLNSALIMVVVGSLS  774 (844)
T ss_dssp             TSTTHHHHHHHSCCCCSSCTTEEEEESSCCC
T ss_pred             hHHHHHHHHHHHHHHHhcCCcEEEEEeccCC
Confidence            99999999998764 5677899999996443

>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1

Probab=98.34  E-value=8.3e-07  Score=62.21  Aligned_cols=73  Identities=3%  Similarity=0.021  Sum_probs=53.8

Q ss_pred             CcccEEEcCccCcCcccHHHHHHHHHhcCCeeeeecCcccCcccchHHHHHhhhcCcEEEEEeecccccChhhHHHHHHH
Q 031331           12 SKYDVFLSFRGEDTRDNFTSHLHAAFCRKNIKTFIDEELSRGDEISQAVLNAMKGSKISVIIFSKRYASSKWCLDELVEI   91 (161)
Q Consensus        12 ~~ydVFISy~~~D~r~~fv~~L~~~L~~~gi~~f~d~~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~El~~~   91 (161)
                      ..|.+||||+.+| .   ...|...|.+.|+. |.|              +.|+.|.++|++.++...+|+||..|+..+
T Consensus         3 ~~~~lFISh~~~d-~---~~~L~~~l~~~~f~-~~~--------------~~I~~~~~vIvL~G~~t~~s~wv~~EI~~A   63 (111)
T 1eiw_A            3 AEIRLYITEGEVE-D---YRVFLERLEQSGLE-WRP--------------ATPEDADAVIVLAGLWGTRRDEILGAVDLA   63 (111)
T ss_dssp             CCEEEEECCCCSH-H---HHHHHHHHHHHCSC-EEE--------------CCSSSCSEEEEEGGGTTTSHHHHHHHHHHH
T ss_pred             ceEEEEEecccHh-H---HHHHHHHHhCCCCe-eec--------------CccccCCEEEEEeCCCcCCChHHHHHHHHH
Confidence            4799999999998 2   33444444333432 222              679999999999999999999999998766


Q ss_pred             HHHHhhCCceeeeEEe
Q 031331           92 LECKNMNGQTVVPVFY  107 (161)
Q Consensus        92 ~~~~~~~~~~viPIfy  107 (161)
                      .    +.+.+||-|.-
T Consensus        64 ~----~~gkpIigV~~   75 (111)
T 1eiw_A           64 R----KSSKPIITVRP   75 (111)
T ss_dssp             T----TTTCCEEEECC
T ss_pred             H----HcCCCEEEEEc
Confidence            4    45667777763

>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}

Probab=97.01  E-value=0.0022  Score=48.39  Aligned_cols=96  Identities=19%  Similarity=0.213  Sum_probs=64.7

Q ss_pred             ccCcCcccHHHHHHHHHhcCCeeeeecCc-c----c---C-cccchHHHHHhhhcCcEEEEEeecccccChhhHHHHHHH
Q 031331           21 RGEDTRDNFTSHLHAAFCRKNIKTFIDEE-L----S---R-GDEISQAVLNAMKGSKISVIIFSKRYASSKWCLDELVEI   91 (161)
Q Consensus        21 ~~~D~r~~fv~~L~~~L~~~gi~~f~d~~-~----~---~-G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~El~~~   91 (161)
                      ..+|.  .....|..--.+..+-.|.|.. .    .   . -..|...+.+.|..|+.+|+++|++..+|.|...|+..+
T Consensus        27 a~~Di--~yy~lL~aWk~n~n~F~F~D~Hd~~y~vrDsS~~e~tIKrrLReRI~~Sk~vIllIs~~T~~s~~v~wEIe~A  104 (189)
T 3hyn_A           27 STHDF--VYYNMLRMWKGEDNSFPFNDAHDKTYNVRDGSDWEKTLKPRLHTRLDNSKNIILFLSSITANSRALREEMNYG  104 (189)
T ss_dssp             GSTTH--HHHHHHHHHHHHCTTSSCCBTTTTCCCTTSCCCTTTTHHHHHHHHHHTEEEEEEECCTTCCCCHHHHHHHHHH
T ss_pred             ccchH--HHHHHHHHHHcCCCceeecchhhccccccccccHHHHHHHHHHHHHHhcCcEEEEEecCccccchhHHHHHHH
Confidence            44553  3455565555555554556642 2    1   2 346788999999999999999999999999999999887


Q ss_pred             HHHHhhCCceeeeEEeecC-cccccccccch
Q 031331           92 LECKNMNGQTVVPVFYQVD-PSDVRNQTGCF  121 (161)
Q Consensus        92 ~~~~~~~~~~viPIfy~v~-p~~v~~~~~~f  121 (161)
                      +.   +.+.+||-|..+-. .+++.+-.|.|
T Consensus       105 i~---~~~~PII~Vy~~~~~~~~i~~~~g~~  132 (189)
T 3hyn_A          105 IG---TKGLPVIVIYPDYDKKSDIVDSNGNF  132 (189)
T ss_dssp             TT---TTCCCEEEEETTCCSGGGTBCTTSCB
T ss_pred             HH---hcCCcEEEEECCccccchhhhccccc
Confidence            62   35668888875522 33454433443

>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*

Probab=92.24  E-value=0.57  Score=34.24  Aligned_cols=75  Identities=11%  Similarity=0.100  Sum_probs=54.4

Q ss_pred             ccHHHHHHHHHhcCCeeeeecCc--ccCcccchHHHHHhhhcCcEEEEEeec--ccccChhhHHHHHHHHHHHhhCCcee
Q 031331           27 DNFTSHLHAAFCRKNIKTFIDEE--LSRGDEISQAVLNAMKGSKISVIIFSK--RYASSKWCLDELVEILECKNMNGQTV  102 (161)
Q Consensus        27 ~~fv~~L~~~L~~~gi~~f~d~~--~~~G~~i~~~i~~aI~~S~~~Ivv~S~--~y~~S~wc~~El~~~~~~~~~~~~~v  102 (161)
                      ..+...+...|+++|+.+|...+  ......|.+.-.++|++|+++|++++|  .-..+.-...|+..+..    .+.+|
T Consensus        26 ~~~~~~l~~~l~~~G~~v~~P~~~~~~~~~~i~~~d~~~i~~aD~vVA~ldpf~g~~~D~GTafEiGyA~A----lgKPV  101 (161)
T 2f62_A           26 ASYYNKVRELLKKENVMPLIPTDNEATEALDIRQKNIQMIKDCDAVIADLSPFRGHEPDCGTAFEVGCAAA----LNKMV  101 (161)
T ss_dssp             HHHHHHHHHHHHTTTCEEECTTTTCCSSHHHHHHHHHHHHHHCSEEEEECCCCSSSSCCHHHHHHHHHHHH----TTCEE
T ss_pred             HHHHHHHHHHHHHCCCEEECCCccCcchHHHHHHHHHHHHHhCCEEEEEecCCCCCCCCCcHHHHHHHHHH----CCCEE
Confidence            37889999999999999988543  223445555668999999999999996  32344557889888764    34465


Q ss_pred             eeE
Q 031331          103 VPV  105 (161)
Q Consensus       103 iPI  105 (161)
                      +-+
T Consensus       102 i~l  104 (161)
T 2f62_A          102 LTF  104 (161)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            554

>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*

Probab=88.93  E-value=2.4  Score=30.66  Aligned_cols=85  Identities=14%  Similarity=0.133  Sum_probs=55.0

Q ss_pred             cccEEEcCccC--cCcccHHHHHHHHHhcCCeeeeecCccc-----Ccc-------cchHHHHHhhhcCcEEEEEeeccc
Q 031331           13 KYDVFLSFRGE--DTRDNFTSHLHAAFCRKNIKTFIDEELS-----RGD-------EISQAVLNAMKGSKISVIIFSKRY   78 (161)
Q Consensus        13 ~ydVFISy~~~--D~r~~fv~~L~~~L~~~gi~~f~d~~~~-----~G~-------~i~~~i~~aI~~S~~~Ivv~S~~y   78 (161)
                      ...|||+=.-.  .........+...|++.| .|+.++...     .|.       .+...-.+.|++|+++|++++   
T Consensus        11 ~~kVYLAGp~~~~~~~~~~~~~i~~~l~~~G-~V~~~~~~~p~~~~~g~~~~~~~~~i~~~d~~~i~~aD~vva~~~---   86 (165)
T 2khz_A           11 PCSVYFCGSIRGGREDQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQDLNWLQQADVVVAEVT---   86 (165)
T ss_dssp             CCEEEEECCCSSCSHHHHHHHHHHHHHHHHS-EESGGGTTTTSSSCCSTTSTTCHHHHHHHHHHHHHHCSEEEEECS---
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHHHHhcC-CcccccccCchhhccccccccCHHHHHHHHHHHHHhCCEEEEECC---
Confidence            45699984222  111225588999999999 886544321     221       223444589999999999997   


Q ss_pred             ccChhhHHHHHHHHHHHhhCCceeeeE
Q 031331           79 ASSKWCLDELVEILECKNMNGQTVVPV  105 (161)
Q Consensus        79 ~~S~wc~~El~~~~~~~~~~~~~viPI  105 (161)
                      ..+.-+..|+..+..    .+..|+-+
T Consensus        87 ~~d~Gt~~EiGyA~a----lgKPVi~l  109 (165)
T 2khz_A           87 QPSLGVGYELGRAVA----LGKPILCL  109 (165)
T ss_dssp             SCCHHHHHHHHHHHH----TCSSEEEE
T ss_pred             CCCCCHHHHHHHHHH----CCCEEEEE
Confidence            456778899988764    34455544

>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*

Probab=82.34  E-value=7.1  Score=28.12  Aligned_cols=84  Identities=19%  Similarity=0.278  Sum_probs=54.6

Q ss_pred             cEEEc--CccCcCcccHHHHHHHHHhcCCeeeeecCc----c-cCcc-------cchHHHHHhhhcCcEEEEEeeccccc
Q 031331           15 DVFLS--FRGEDTRDNFTSHLHAAFCRKNIKTFIDEE----L-SRGD-------EISQAVLNAMKGSKISVIIFSKRYAS   80 (161)
Q Consensus        15 dVFIS--y~~~D~r~~fv~~L~~~L~~~gi~~f~d~~----~-~~G~-------~i~~~i~~aI~~S~~~Ivv~S~~y~~   80 (161)
                      .|||+  +++.+....+...+.+.|++.| .|+...-    + ..|+       .+.+.-.+.|++|+++|.+++   ..
T Consensus         4 kIYlAGP~f~~~e~~~~~~~i~~~L~~~G-~Vl~~hv~~~~l~~~g~~~~~~~~~i~~~d~~~i~~aD~vvA~l~---~~   79 (152)
T 4fyk_A            4 SVYFCGSIRGGREDQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQNLNWLQQADVVVAEVT---QP   79 (152)
T ss_dssp             EEEEECCSTTCCTTHHHHHHHHHHHTTTS-EECCCC-------------CCCHHHHHHHHHHHHHHCSEEEEECS---SC
T ss_pred             eEEEECCCCCcHHHHHHHHHHHHHHHHcC-cccccccCchhhhhccccccCCHHHHHHHHHHHHHHCCEEEEeCC---CC
Confidence            46665  3332223467799999999999 6764221    1 1222       256677789999999999988   55


Q ss_pred             ChhhHHHHHHHHHHHhhCCceeeeEE
Q 031331           81 SKWCLDELVEILECKNMNGQTVVPVF  106 (161)
Q Consensus        81 S~wc~~El~~~~~~~~~~~~~viPIf  106 (161)
                      |.-...|+..+...    +.+|+-++
T Consensus        80 d~Gt~~EiG~A~al----gkPV~~l~  101 (152)
T 4fyk_A           80 SLGVGYELGRAVAL----GKPILCLF  101 (152)
T ss_dssp             CHHHHHHHHHHHHT----TCCEEEEE
T ss_pred             CCCHHHHHHHHHHc----CCeEEEEE
Confidence            77788899887653    44555443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	161
d1fyva_	161	c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (H	3e-20
d1fyxa_	149	c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (H	2e-17

>d1fyva_ c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (Homo sapiens) [TaxId: 9606]} Length = 161

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 1, TLR1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.8 bits (196), Expect = 3e-20
 Identities = 18/118 (15%), Positives = 46/118 (38%), Gaps = 3/118 (2%)

Query: 13  KYDVFLSFRGEDTRDNFTSHLHAAFCRKNIKTFIDE-ELSRGDEISQAVLNAMKGSKISV 71
           ++  F+S+ G D+     + L     ++ ++  + E     G  I + ++  ++ S  S+
Sbjct: 12  QFHAFISYSGHDSF-WVKNELLPNLEKEGMQICLHERNFVPGKSIVENIITCIEKSYKSI 70

Query: 72  IIFSKRYASSKWCLDELVEILECKNMNGQ-TVVPVFYQVDPSDVRNQTGCFADAFVEH 128
            + S  +  S+WC  EL          G  +++ +  +  P      +     + +  
Sbjct: 71  FVLSPNFVQSEWCHYELYFAHHNLFHEGSNSLILILLEPIPQYSIPSSYHKLKSLMAR 128

>d1fyxa_ c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (Homo sapiens) [TaxId: 9606]} Length = 149

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 2, TLR2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.1 bits (176), Expect = 2e-17
 Identities = 21/125 (16%), Positives = 43/125 (34%), Gaps = 7/125 (5%)

Query: 9   SAQSKYDVFLSFRGEDT---RDNFTSHLHAAFCRKNIKTFIDE-ELSRGDEISQAVLNAM 64
           S    YD F+S+   D     +     L         K  + + +   G  I   +++++
Sbjct: 1   SRNICYDAFVSYSERDAYWVENLMVQELEN--FNPPFKLCLHKRDFIHGKWIIDNIIDSI 58

Query: 65  KGSKISVIIFSKRYASSKWCLDELVEIL-ECKNMNGQTVVPVFYQVDPSDVRNQTGCFAD 123
           + S  +V + S+ +  S+WC  EL        + N    + +  +        Q  C   
Sbjct: 59  EKSHKTVFVLSENFVKSEWCKYELDFSHFRLFDENNDAAILILLEPIEKKAIPQRFCKLR 118

Query: 124 AFVEH 128
             +  
Sbjct: 119 KIMNT 123

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	161
d1fyva_	161	Toll-like receptor 1, TLR1 {Human (Homo sapiens) [	99.9
d1fyxa_	149	Toll-like receptor 2, TLR2 {Human (Homo sapiens) [	99.89
d2f62a1	152	Nucleoside 2-deoxyribosyltransferase {Trypanosoma	92.05
d1wu7a1	97	Histidyl-tRNA synthetase (HisRS), C-terminal domai	91.91

>d1fyva_ c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 1, TLR1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=8.7e-25  Score=161.87  Aligned_cols=101  Identities=16%  Similarity=0.395  Sum_probs=90.5

Q ss_pred             CCCCCCcccEEEcCccCcCcccHH-HHHHHHHhcCCeeeeecCc-ccCcccchHHHHHhhhcCcEEEEEeecccccChhh
Q 031331            7 SHSAQSKYDVFLSFRGEDTRDNFT-SHLHAAFCRKNIKTFIDEE-LSRGDEISQAVLNAMKGSKISVIIFSKRYASSKWC   84 (161)
Q Consensus         7 s~~~~~~ydVFISy~~~D~r~~fv-~~L~~~L~~~gi~~f~d~~-~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wc   84 (161)
                      ....+++|||||||+++|.  .|| ..|...|+++|+++|+|++ +.+|+.+.++|.++|++|+++|+|+|++|+.|.||
T Consensus         6 ~~~~~~~yDvFisys~~D~--~~v~~~L~~~Le~~g~~v~~d~~d~~~G~~~~~~i~~~i~~s~~~i~vlS~~~~~s~w~   83 (161)
T d1fyva_           6 ELQRNLQFHAFISYSGHDS--FWVKNELLPNLEKEGMQICLHERNFVPGKSIVENIITCIEKSYKSIFVLSPNFVQSEWC   83 (161)
T ss_dssp             TSSSCCCEEEEEECCGGGH--HHHHHTHHHHHHTTTCCEECTTTTCCTTSCHHHHHHHHHHHEEEEEEEESHHHHHHTSH
T ss_pred             HcCCCCeeEEEEecChhHH--HHHHHHHHHHHHhCCCcceEeccccccccccHHHHHHHHHhCCEEEEEecCccccChHH
Confidence            3456789999999999993  677 5799999999999999887 99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH-hhCCceeeeEEeec
Q 031331           85 LDELVEILECK-NMNGQTVVPVFYQV  109 (161)
Q Consensus        85 ~~El~~~~~~~-~~~~~~viPIfy~v  109 (161)
                      ..|+..++++. +.+..++|||+++.
T Consensus        84 ~~E~~~a~~~~~~~~~~~lIpV~l~~  109 (161)
T d1fyva_          84 HYELYFAHHNLFHEGSNSLILILLEP  109 (161)
T ss_dssp             HHHHHTTSCCCSCSSCSSEEEEESSC
T ss_pred             HHHHHHHHHHHHHcCCCceeEEEEec
Confidence            99999998764 45567999999964

>d1fyxa_ c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 2, TLR2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.9e-24  Score=158.10  Aligned_cols=104  Identities=16%  Similarity=0.341  Sum_probs=89.0

Q ss_pred             CCCcccEEEcCccCcCcccHH-HHHHHHHhc--CCeeeeecCc-ccCcccchHHHHHhhhcCcEEEEEeecccccChhhH
Q 031331           10 AQSKYDVFLSFRGEDTRDNFT-SHLHAAFCR--KNIKTFIDEE-LSRGDEISQAVLNAMKGSKISVIIFSKRYASSKWCL   85 (161)
Q Consensus        10 ~~~~ydVFISy~~~D~r~~fv-~~L~~~L~~--~gi~~f~d~~-~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~   85 (161)
                      .++.|||||||+++|  ..|| ..|...|++  .|+++|+|++ +.+|+.+.++|.++|++|+++|+|+||+|+.|.||.
T Consensus         2 ~~~~YDvFiSys~~D--~~~V~~~l~~~LE~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~S~~~i~vlS~~~l~s~wc~   79 (149)
T d1fyxa_           2 RNICYDAFVSYSERD--AYWVENLMVQELENFNPPFKLCLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWCK   79 (149)
T ss_dssp             CSCCEEEEEECCGGG--HHHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHH
T ss_pred             CCCEEEEEEECchhh--HHHHHHHHHHHHHhcCCCceEEEecccccccchHHHHHHHHHHhCCEEEEEEcCccccccchH
Confidence            478999999999999  3676 569999976  4899999877 999999999999999999999999999999999999


Q ss_pred             HHHHHHHHH-HhhCCceeeeEEee-cCccccc
Q 031331           86 DELVEILEC-KNMNGQTVVPVFYQ-VDPSDVR  115 (161)
Q Consensus        86 ~El~~~~~~-~~~~~~~viPIfy~-v~p~~v~  115 (161)
                      .|+..++.. .++++.++|||+++ +...++.
T Consensus        80 ~E~~~a~~~~~~~~~~~iIpV~l~~~~~~~~~  111 (149)
T d1fyxa_          80 YELDFSHFRLFDENNDAAILILLEPIEKKAIP  111 (149)
T ss_dssp             HHSCCSCCTTCGGGTTCCEEEESSCCCTTTSC
T ss_pred             HHHHHHHHHHHHcCCceEEEEEeccCchhhcc
Confidence            999887654 35667899999996 4444443

>d2f62a1 c.23.14.1 (A:9-160) Nucleoside 2-deoxyribosyltransferase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: N-(deoxy)ribosyltransferase-like
family: N-deoxyribosyltransferase
domain: Nucleoside 2-deoxyribosyltransferase
species: Trypanosoma brucei [TaxId: 5691]

Probab=92.05  E-value=0.28  Score=33.82  Aligned_cols=71  Identities=11%  Similarity=0.085  Sum_probs=54.4

Q ss_pred             cCcccHHHHHHHHHhcCCeeeeecCc--ccCcccchHHHHHhhhcCcEEEEEeecc--cccChhhHHHHHHHHHH
Q 031331           24 DTRDNFTSHLHAAFCRKNIKTFIDEE--LSRGDEISQAVLNAMKGSKISVIIFSKR--YASSKWCLDELVEILEC   94 (161)
Q Consensus        24 D~r~~fv~~L~~~L~~~gi~~f~d~~--~~~G~~i~~~i~~aI~~S~~~Ivv~S~~--y~~S~wc~~El~~~~~~   94 (161)
                      |.+..+...+...|+..|+.++...+  ......|...-.+.|++|+++|.++++-  -..+.=+..|+..+...
T Consensus        15 d~~~~~~~~i~~~l~~~g~~~~~P~d~~~~~~~~If~~d~~~i~~~D~VIA~Ld~frg~~~D~GTa~EiG~A~al   89 (152)
T d2f62a1          15 DMGASYYNKVRELLKKENVMPLIPTDNEATEALDIRQKNIQMIKDCDAVIADLSPFRGHEPDCGTAFEVGCAAAL   89 (152)
T ss_dssp             TTTHHHHHHHHHHHHTTTCEEECTTTTCCSSHHHHHHHHHHHHHHCSEEEEECCCCSSSSCCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHCCCEEeccccccchhHHHHHHHHHHHHHhCCEEEEEccccCCCCCCchHHHHHHHHHHC
Confidence            33456889999999999999997444  4444567788889999999999999852  23455688899888754

>d1wu7a1 c.51.1.1 (A:330-426) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Anticodon-binding domain of Class II aaRS
domain: Histidyl-tRNA synthetase (HisRS), C-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=91.91  E-value=0.21  Score=31.42  Aligned_cols=62  Identities=13%  Similarity=0.168  Sum_probs=45.3

Q ss_pred             CcccEEEcCccCcCcccHHHHHHHHHhcCCeeeeecCcccCcccchHHHHHhhhcCcEEEEEeecc
Q 031331           12 SKYDVFLSFRGEDTRDNFTSHLHAAFCRKNIKTFIDEELSRGDEISQAVLNAMKGSKISVIIFSKR   77 (161)
Q Consensus        12 ~~ydVFISy~~~D~r~~fv~~L~~~L~~~gi~~f~d~~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~   77 (161)
                      ...+|||..-+++. ...+..|...|++.|+++-+|..   +..+...+..|-..---.++|+-++
T Consensus         2 ~~~~V~i~~~g~~~-~~~~~~l~~~Lr~~gi~v~~d~~---~~~l~kq~~~A~~~~~~~~iiiG~~   63 (97)
T d1wu7a1           2 EKKSVYICRVGKIN-SSIMNEYSRKLRERGMNVTVEIM---ERGLSAQLKYASAIGADFAVIFGER   63 (97)
T ss_dssp             SSCEEEEEEESSCC-HHHHHHHHHHHHTTTCEEEECCS---CCCHHHHHHHHHHTTCSEEEEEEHH
T ss_pred             CCceEEEEEeCHHH-HHHHHHHHHHHHHCCCEEEEECC---CCcHHHHHHHHHhcCCCeEEecCCc
Confidence            35789999988875 57899999999999999998763   4466666766666444455555544