Citrus Sinensis ID: 031392

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160
Protein Sequence
MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCTIDELQQLENQLERSLSRIRARKNQLFREQIEKLKEKVITF
Secondary Structure (PSIPRED)
cccccHHHHHccccccccccccccccccHHHHHHHHHHHHccccEEEEcccccccccccccHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEcccccEEEEEcccHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
mvrgktqmKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIfsprgklyefsscSINKTIERYQKKtkdiginskivedhsqhakeeTSNMMTKLEFLEVAKRKLlgdglepctiDELQQLENQLERSLSRIRARKNQLFREQIEKLKEKVITF
Flexible Loop (DISEMBL)
mvrgktqmkrienatsrqvtfskrrnGLLKKAFELSVLCDAEVALIIfsprgklyefsSCSINKTIEryqkktkdiginskivedhsqhakeetsnmmtkLEFLEVAKRKLLGDGLEPCTIDELQQLENQLERSLSRIRARKNQLFREQIEKLKEKVITF
Low Complexity Region (SEG)
MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCTIDELQQLENQLERSLSRIRARKNQLFREQIEKLKEKVITF
Disordered region (IsUnstruct)
************************RNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERYQKKTKDIGIN*********************LEFLEVAKRKLLGDGLEPCTIDEL************************************
Disordered Region (DISOPRED)
MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERYQK********************EETSNMMTKLEFLEVAKRKLLGDGLEPCTIDELQQLENQLERSLSRIRARKNQLFREQIEKLKEKVI**
Disordered Region (DISEMBL)
*************ATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCTIDELQQLENQLERSLSRIRARKNQLFREQIEKLKEKVITF
Disordered Region (DISPRO)
*****TQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCTIDELQQLENQLERSLSRIRARKNQLFREQIEKLKEKV***
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCTxxxxxxxxxxxxxxxxxxxxxxxxxxxxQIEKLKEKVITF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	160	2.2.26 [Sep-21-2011]
O82743	219	Agamous-like MADS-box pro	yes	no	0.956	0.698	0.753	1e-60
O64645	214	MADS-box protein SOC1 OS=	no	no	0.975	0.728	0.685	3e-56
Q38838	221	Agamous-like MADS-box pro	no	no	0.912	0.660	0.716	5e-54
Q9XJ60	230	MADS-box transcription fa	yes	no	0.968	0.673	0.660	2e-50
A2Z9Q7	233	MADS-box transcription fa	N/A	no	0.968	0.665	0.617	4e-48
P0C5B2	233	MADS-box transcription fa	no	no	0.968	0.665	0.611	3e-47
Q7XUN2	249	MADS-box transcription fa	no	no	0.975	0.626	0.579	5e-43
Q6EU39	250	MADS-box transcription fa	no	no	0.962	0.616	0.573	7e-41
Q40704	236	MADS-box transcription fa	no	no	0.987	0.669	0.477	4e-40
Q38836	230	Agamous-like MADS-box pro	no	no	0.987	0.686	0.487	2e-39

>sp|O82743|AGL19_ARATH Agamous-like MADS-box protein AGL19 OS=Arabidopsis thaliana GN=AGL19 PE=1 SV=1

 Score =  231 bits (589), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 116/154 (75%), Positives = 136/154 (88%), Gaps = 1/154 (0%)

Query: 1   MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSC 60
           MVRGKT+MKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAL+IFSPR KLYEFSS 
Sbjct: 1   MVRGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALVIFSPRSKLYEFSSS 60

Query: 61  SINKTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCT 120
           SI  TIERYQ++ K+IG N K   D+SQ A++ETS +  K+E LE++KRKLLG+G++ C+
Sbjct: 61  SIAATIERYQRRIKEIGNNHK-RNDNSQQARDETSGLTKKIEQLEISKRKLLGEGIDACS 119

Query: 121 IDELQQLENQLERSLSRIRARKNQLFREQIEKLK 154
           I+ELQQLENQL+RSLSRIRA+K QL RE+IEKLK
Sbjct: 120 IEELQQLENQLDRSLSRIRAKKYQLLREEIEKLK 153

Probable transcription factor that promotes flowering, especially in response to vernalization by short periods of cold, in an FLC-inpedendent manner.
Arabidopsis thaliana (taxid: 3702)

>sp|O64645|SOC1_ARATH MADS-box protein SOC1 OS=Arabidopsis thaliana GN=SOC1 PE=1 SV=1

 Score =  216 bits (551), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 107/156 (68%), Positives = 131/156 (83%)

Query: 1   MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSC 60
           MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEV+LIIFSP+GKLYEF+S 
Sbjct: 1   MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVSLIIFSPKGKLYEFASS 60

Query: 61  SINKTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCT 120
           ++  TI+RY + TKD      + E++ QH K E +NMM K+E LE +KRKLLG+G+  C+
Sbjct: 61  NMQDTIDRYLRHTKDRVSTKPVSEENMQHLKYEAANMMKKIEQLEASKRKLLGEGIGTCS 120

Query: 121 IDELQQLENQLERSLSRIRARKNQLFREQIEKLKEK 156
           I+ELQQ+E QLE+S+  IRARK Q+F+EQIE+LK+K
Sbjct: 121 IEELQQIEQQLEKSVKCIRARKTQVFKEQIEQLKQK 156

Transcription activator active in flowering time control. May integrate signals from the photoperiod, vernalization and autonomous floral induction pathways. Can modulates class B and C homeotic genes expression. When associated with AGL24, mediates effect of gibberellins on flowering under short-day conditions, and regulates the expression of LEAFY (LFY), which links floral induction and floral development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q38838|AGL14_ARATH Agamous-like MADS-box protein AGL14 OS=Arabidopsis thaliana GN=AGL14 PE=1 SV=2

 Score =  209 bits (533), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 106/148 (71%), Positives = 127/148 (85%), Gaps = 2/148 (1%)

Query: 1   MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEF-SS 59
           MVRGKT+MKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEF SS
Sbjct: 1   MVRGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSS 60

Query: 60  CSINKTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPC 119
            SI KT+ERYQK+ +D+G N K   D+SQ +K+ET  +  K+E LE++ RK++G+GL+  
Sbjct: 61  SSIPKTVERYQKRIQDLGSNHK-RNDNSQQSKDETYGLARKIEHLEISTRKMMGEGLDAS 119

Query: 120 TIDELQQLENQLERSLSRIRARKNQLFR 147
           +I+ELQQLENQL+RSL +IRA+K QL R
Sbjct: 120 SIEELQQLENQLDRSLMKIRAKKYQLLR 147

Probable transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9XJ60|MAD50_ORYSJ MADS-box transcription factor 50 OS=Oryza sativa subsp. japonica GN=MADS50 PE=2 SV=1

 Score =  197 bits (501), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 103/156 (66%), Positives = 120/156 (76%), Gaps = 1/156 (0%)

Query: 1   MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSC 60
           MVRGKTQMKRIEN TSRQVTFSKRRNGLLKKAFELSVLCDAEVALI+FSPRGKLYEF+S 
Sbjct: 1   MVRGKTQMKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGKLYEFASA 60

Query: 61  SINKTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCT 120
           S  KTIERY+  TK+  I +K V+   +  K +   +  KLE LE  KRKLLG+ L+ C+
Sbjct: 61  STQKTIERYRTYTKE-NIGNKTVQQDIEQVKADADGLAKKLEALETYKRKLLGEKLDECS 119

Query: 121 IDELQQLENQLERSLSRIRARKNQLFREQIEKLKEK 156
           I+EL  LE +LERSL  IR RK +L  EQ+ KL+EK
Sbjct: 120 IEELHSLEVKLERSLISIRGRKTKLLEEQVAKLREK 155

Probable transcription factor active in flowering time control. May control internode elongation and promote floral transition phase. May act upstream of the floral regulators MADS1, MADS14, MADS15 and MADS18 in the floral induction pathway.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2Z9Q7|MAD56_ORYSI MADS-box transcription factor 56 OS=Oryza sativa subsp. indica GN=MADS56 PE=2 SV=2

 Score =  189 bits (481), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 97/157 (61%), Positives = 125/157 (79%), Gaps = 2/157 (1%)

Query: 1   MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSC 60
           MVRG+T++KRIEN TSRQVTFSKRRNGLLKKAFELSVLCDAEVALI+FSPRG+LYEF+S 
Sbjct: 1   MVRGRTELKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGRLYEFASA 60

Query: 61  -SINKTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPC 119
            S+ KTI+RY+  TKD  +N+K ++   Q  K++T  +  KLE L+ ++RK+LG+ LE C
Sbjct: 61  PSLQKTIDRYKAYTKD-HVNNKTIQQDIQQVKDDTLGLAKKLEALDESRRKILGENLEGC 119

Query: 120 TIDELQQLENQLERSLSRIRARKNQLFREQIEKLKEK 156
           +I+EL+ LE +LE+SL  IR +K +L   QI KLKEK
Sbjct: 120 SIEELRGLEMKLEKSLHNIRLKKTELLERQIAKLKEK 156

Probable transcription factor.

Oryza sativa subsp. indica (taxid: 39946)

>sp|P0C5B2|MAD56_ORYSJ MADS-box transcription factor 56 OS=Oryza sativa subsp. japonica GN=MADS56 PE=2 SV=1

 Score =  187 bits (474), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 96/157 (61%), Positives = 126/157 (80%), Gaps = 2/157 (1%)

Query: 1   MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSC 60
           MVRG+T++KRIEN TSRQVTFSKRRNGLLKKAFELSVLCDAEVALI+FSPRG+LYEF+S 
Sbjct: 1   MVRGRTELKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGRLYEFASA 60

Query: 61  -SINKTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPC 119
            S+ KTI+RY+  TKD  +N+K ++   Q  K++T  +  KLE L+ ++RK+LG+ LE  
Sbjct: 61  PSLQKTIDRYKAYTKD-HVNNKTIQQDIQQVKDDTLGLAKKLEALDESRRKILGENLEGF 119

Query: 120 TIDELQQLENQLERSLSRIRARKNQLFREQIEKLKEK 156
           +I+EL+ LE +LE+SL +IR +K +L  +QI KLKEK
Sbjct: 120 SIEELRGLEMKLEKSLHKIRLKKTELLEQQIAKLKEK 156

Probable transcription factor.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q7XUN2|MAD17_ORYSJ MADS-box transcription factor 17 OS=Oryza sativa subsp. japonica GN=MADS17 PE=1 SV=2

 Score =  173 bits (438), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 91/157 (57%), Positives = 113/157 (71%), Gaps = 1/157 (0%)

Query: 1   MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSC 60
           M RG+ ++KRIEN  +RQVTFSKRRNGLLKKA+ELSVLCDAEVALIIFS RGKLYEF S 
Sbjct: 1   MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA 60

Query: 61  SINKTIERYQKKTKDI-GINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPC 119
            INKT+E+Y     +  G NS +     Q   +E S + TKLE L+ ++R +LG+ L P 
Sbjct: 61  GINKTLEKYNSCCYNAQGSNSALAGGEHQSWYQEMSRLKTKLECLQRSQRHMLGEDLGPL 120

Query: 120 TIDELQQLENQLERSLSRIRARKNQLFREQIEKLKEK 156
           +I ELQQLE QLE SLS+ R RK Q+  EQ++ L+ K
Sbjct: 121 SIKELQQLEKQLEYSLSQARQRKTQIMMEQVDDLRRK 157

Probable transcription factor. Plays minor but redundant roles with MADS6 in floral development.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6EU39|MADS6_ORYSJ MADS-box transcription factor 6 OS=Oryza sativa subsp. japonica GN=MADS6 PE=1 SV=1

 Score =  166 bits (419), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 90/157 (57%), Positives = 111/157 (70%), Gaps = 3/157 (1%)

Query: 1   MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSC 60
           M RG+ ++KRIEN  +RQVTFSKRRNGLLKKA+ELSVLCDAEVALIIFS RGKLYEF S 
Sbjct: 1   MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA 60

Query: 61  SINKTIERYQKKTKDI-GINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPC 119
            I KT+ERYQ    +    N+ + E  S +   E S +  K E L+  +R LLG+ L P 
Sbjct: 61  GITKTLERYQHCCYNAQDSNNALSETQSWY--HEMSKLKAKFEALQRTQRHLLGEDLGPL 118

Query: 120 TIDELQQLENQLERSLSRIRARKNQLFREQIEKLKEK 156
           ++ ELQQLE QLE +LS+ R RK QL  EQ+E+L+ K
Sbjct: 119 SVKELQQLEKQLECALSQARQRKTQLMMEQVEELRRK 155

Probable transcription factor. Regulates floral organ identity and floral meristem determinacy. May be involved in the control of flowering time.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q40704|MADS3_ORYSJ MADS-box transcription factor 3 OS=Oryza sativa subsp. japonica GN=MADS3 PE=2 SV=1

 Score =  163 bits (413), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 76/159 (47%), Positives = 120/159 (75%), Gaps = 1/159 (0%)

Query: 1   MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSC 60
           M RGK ++KRIEN T+RQVTF KRRNGLLKKA+ELSVLCDAEVALI+FS RG+LYE+++ 
Sbjct: 1   MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANN 60

Query: 61  SINKTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAK-RKLLGDGLEPC 119
           S+  T+ERY+K   D   +  + E ++QH ++E+S +  ++  L+ A  R ++GD +   
Sbjct: 61  SVKSTVERYKKANSDTSNSGTVAEVNAQHYQQESSKLRQQISSLQNANSRTIVGDSINTM 120

Query: 120 TIDELQQLENQLERSLSRIRARKNQLFREQIEKLKEKVI 158
           ++ +L+Q+EN+LE+ +++IRARKN+L   ++E ++++ +
Sbjct: 121 SLRDLKQVENRLEKGIAKIRARKNELLYAEVEYMQKREV 159

Probable transcription factor involved in the development of floral organs. Acts as C-class protein in association with MADS58. Involved in the control of lodicule number (whorl 2), stamen specification (whorl 3) and floral meristem determinacy (whorl 4), but not in the regulation of carpel morphogenesis. Plays a more predominant role in controlling lodicule development and in specifying stamen identity than MADS58.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q38836|AGL11_ARATH Agamous-like MADS-box protein AGL11 OS=Arabidopsis thaliana GN=AGL11 PE=1 SV=1

 Score =  160 bits (406), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 77/158 (48%), Positives = 121/158 (76%)

Query: 1   MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSC 60
           M RGK ++KRIEN+T+RQVTF KRRNGLLKKA+ELSVLCDAEVALI+FS RG+LYE+++ 
Sbjct: 1   MGRGKIEIKRIENSTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANN 60

Query: 61  SINKTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCT 120
           +I  TIERY+K   D    S + E ++ + ++E++ +  +++ ++ + R L+GD L   +
Sbjct: 61  NIRSTIERYKKACSDSTNTSTVQEINAAYYQQESAKLRQQIQTIQNSNRNLMGDSLSSLS 120

Query: 121 IDELQQLENQLERSLSRIRARKNQLFREQIEKLKEKVI 158
           + EL+Q+EN+LE+++SRIR++K++L   +IE  +++ I
Sbjct: 121 VKELKQVENRLEKAISRIRSKKHELLLVEIENAQKREI 158

Probable transcription factor.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	160
224053999	170	predicted protein [Populus trichocarpa]	0.987	0.929	0.787	2e-66
95103172	217	MADS box transcription factor [Populus t	0.987	0.728	0.775	4e-65
224074776	212	MIKC mads-box transcription factor [Popu	0.987	0.745	0.781	1e-64
225453843	218	PREDICTED: MADS-box protein SOC1 [Vitis	0.975	0.715	0.745	1e-60
297799714	219	hypothetical protein ARALYDRAFT_492570 [	0.968	0.707	0.762	2e-60
397911040	165	suppressor of overexpression of constans	0.975	0.945	0.730	2e-60
359806378	224	uncharacterized protein LOC100805260 [Gl	0.968	0.691	0.748	1e-59
269116072	218	suppressor of overexpression of CO 1 [Vi	0.975	0.715	0.738	1e-59
356563236	220	PREDICTED: agamous-like MADS-box protein	0.968	0.704	0.735	6e-59
15235869	219	agamous-like MADS-box protein AGL19 [Ara	0.956	0.698	0.753	7e-59

>gi|224053999|ref|XP_002298078.1| predicted protein [Populus trichocarpa] gi|222845336|gb|EEE82883.1| predicted protein [Populus trichocarpa]

 Score =  256 bits (655), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 126/160 (78%), Positives = 144/160 (90%), Gaps = 2/160 (1%)

Query: 1   MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSC 60
           MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALI+FS RGKLYEFSS 
Sbjct: 1   MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSTRGKLYEFSSS 60

Query: 61  SINKTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCT 120
           S+N+TIE YQK+ KD+G +SK+V+D+ Q  KE+   +  K+E LEV+KRKLLGDGLEPC+
Sbjct: 61  SMNRTIESYQKRAKDVGTSSKMVKDNMQPVKEDAFTLAKKIELLEVSKRKLLGDGLEPCS 120

Query: 121 IDELQQLENQLERSLSRIRARKNQLFREQIEKLK--EKVI 158
           ID+LQQLENQLERSL+RIRARKNQLFREQIEKLK  EK++
Sbjct: 121 IDDLQQLENQLERSLTRIRARKNQLFREQIEKLKGEEKIL 160

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|95103172|gb|ABF51526.1| MADS box transcription factor [Populus tomentosa]

 Score =  252 bits (643), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 124/160 (77%), Positives = 145/160 (90%), Gaps = 2/160 (1%)

Query: 1   MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSC 60
           MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELS+LCDAEVALI+FS RGKLYEFSS 
Sbjct: 1   MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSILCDAEVALIVFSTRGKLYEFSSS 60

Query: 61  SINKTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCT 120
           S+N+TIERYQK+ KD+GI+S++V+D+ Q  KE+   +  K++ LEV+KRKLLGDGLE C+
Sbjct: 61  SMNRTIERYQKRAKDVGISSRMVKDNMQPVKEDAFTLAKKIDILEVSKRKLLGDGLEQCS 120

Query: 121 IDELQQLENQLERSLSRIRARKNQLFREQIEKLK--EKVI 158
           ID+LQQLENQLERSL+RIRARKNQLFREQIEKLK  EK++
Sbjct: 121 IDDLQQLENQLERSLTRIRARKNQLFREQIEKLKGEEKIL 160

Source: Populus tomentosa

Species: Populus tomentosa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224074776|ref|XP_002304455.1| MIKC mads-box transcription factor [Populus trichocarpa] gi|222841887|gb|EEE79434.1| MIKC mads-box transcription factor [Populus trichocarpa]

 Score =  250 bits (639), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 125/160 (78%), Positives = 144/160 (90%), Gaps = 2/160 (1%)

Query: 1   MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSC 60
           MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALI+FS RGKLYEFSS 
Sbjct: 1   MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSSRGKLYEFSSS 60

Query: 61  SINKTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCT 120
           SIN+TIERYQK+ KD+GI+SK+V+D+ Q  KE+T  +  K+E LEV+KRKLLG+GLE C+
Sbjct: 61  SINRTIERYQKRAKDVGISSKMVQDNIQPVKEDTFTLAKKIELLEVSKRKLLGEGLETCS 120

Query: 121 IDELQQLENQLERSLSRIRARKNQLFREQIEKLK--EKVI 158
            D+LQQLENQL RSL+RIRARKNQLFRE+IEKLK  EK++
Sbjct: 121 TDDLQQLENQLGRSLTRIRARKNQLFRERIEKLKGEEKIL 160

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453843|ref|XP_002277773.1| PREDICTED: MADS-box protein SOC1 [Vitis vinifera] gi|95116634|gb|ABF56527.1| MADS-box protein [Vitis vinifera] gi|296089122|emb|CBI38825.3| unnamed protein product [Vitis vinifera]

 Score =  237 bits (604), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 117/157 (74%), Positives = 136/157 (86%), Gaps = 1/157 (0%)

Query: 1   MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSC 60
           MVRGKTQM+RIENATSRQVTFSKRRNGL KKAFELSVLCDAEVALIIFSPRGKLYEFSS 
Sbjct: 1   MVRGKTQMRRIENATSRQVTFSKRRNGLFKKAFELSVLCDAEVALIIFSPRGKLYEFSSS 60

Query: 61  SINKTIERYQKKTKDIGINS-KIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPC 119
           S+ +TIERYQ+ TKD+  N+ K  E + QH K E +NM  K+E LE++KRKLLG+GL  C
Sbjct: 61  SMQETIERYQRHTKDVHTNNYKTTEHNMQHLKHEAANMAKKIELLEISKRKLLGEGLGSC 120

Query: 120 TIDELQQLENQLERSLSRIRARKNQLFREQIEKLKEK 156
           +I+ELQQ+E QLERS+S IRARKNQ+F+EQIE+LKEK
Sbjct: 121 SIEELQQIEQQLERSVSSIRARKNQVFKEQIEQLKEK 157

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297799714|ref|XP_002867741.1| hypothetical protein ARALYDRAFT_492570 [Arabidopsis lyrata subsp. lyrata] gi|297313577|gb|EFH44000.1| hypothetical protein ARALYDRAFT_492570 [Arabidopsis lyrata subsp. lyrata]

 Score =  236 bits (603), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 119/156 (76%), Positives = 139/156 (89%), Gaps = 1/156 (0%)

Query: 1   MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSC 60
           MVRGKT+MKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAL+IFSPR KLYEFSS 
Sbjct: 1   MVRGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALVIFSPRSKLYEFSSS 60

Query: 61  SINKTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCT 120
           SI KTIERYQ++ K+IGIN K   D+SQ A++ETS +  K+E LE +KRKLLG+G++ C+
Sbjct: 61  SIAKTIERYQRRIKEIGINHK-RNDNSQQARDETSGLTKKIEQLETSKRKLLGEGIDACS 119

Query: 121 IDELQQLENQLERSLSRIRARKNQLFREQIEKLKEK 156
           I+ELQQLENQL+RSLSRIRA+K QL RE+IEKLKE+
Sbjct: 120 IEELQQLENQLDRSLSRIRAKKYQLLREEIEKLKEQ 155

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|397911040|gb|AFO68796.1| suppressor of overexpression of constans 1, partial [Pachysandra terminalis]

 Score =  236 bits (603), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 114/156 (73%), Positives = 134/156 (85%)

Query: 1   MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSC 60
           MVRGKTQM+RIENATSRQVTFSKRRNGLLKKAFELSVLCDAEV LI+FSPRGKLYEFS+ 
Sbjct: 1   MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVGLIVFSPRGKLYEFSNS 60

Query: 61  SINKTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCT 120
           S+  TIERYQ+ +KD+ IN+K +E + QH K E  NM  K+E LE++KRKLLG+GL  CT
Sbjct: 61  SMQNTIERYQRYSKDVLINNKSIEQNMQHLKHEAVNMSKKIEHLEISKRKLLGEGLRSCT 120

Query: 121 IDELQQLENQLERSLSRIRARKNQLFREQIEKLKEK 156
           +DELQ++ENQLERSL  +RARK QLF+EQ E+LKEK
Sbjct: 121 VDELQRVENQLERSLINVRARKTQLFKEQTEQLKEK 156

Source: Pachysandra terminalis

Species: Pachysandra terminalis

Genus: Pachysandra

Family: Buxaceae

Order: Buxales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806378|ref|NP_001240979.1| uncharacterized protein LOC100805260 [Glycine max] gi|255647867|gb|ACU24392.1| unknown [Glycine max]

 Score =  234 bits (596), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 116/155 (74%), Positives = 137/155 (88%)

Query: 1   MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSC 60
           MVRGKTQMKRIEN TSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFS RG+LYEFSS 
Sbjct: 1   MVRGKTQMKRIENETSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSTRGRLYEFSSS 60

Query: 61  SINKTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCT 120
           SINKT+ERYQ+K +D+G+++K + +++QH KE   +M  K+E LE ++RKLLGD L+ C+
Sbjct: 61  SINKTVERYQRKIEDLGVSNKGIHENTQHLKEVDMSMAKKIEHLEDSRRKLLGDELDKCS 120

Query: 121 IDELQQLENQLERSLSRIRARKNQLFREQIEKLKE 155
           IDELQQLENQLERSL +IRA KNQLFR++IEKLKE
Sbjct: 121 IDELQQLENQLERSLDKIRATKNQLFRKRIEKLKE 155

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|269116072|gb|ACZ26527.1| suppressor of overexpression of CO 1 [Vitis vinifera]

 Score =  233 bits (595), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 116/157 (73%), Positives = 135/157 (85%), Gaps = 1/157 (0%)

Query: 1   MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSC 60
           MVRGKTQM+RIENATSRQVTFSKRRNGL KKAFELSVLCDAEVALIIFSPRGKLYEFSS 
Sbjct: 1   MVRGKTQMRRIENATSRQVTFSKRRNGLFKKAFELSVLCDAEVALIIFSPRGKLYEFSSS 60

Query: 61  SINKTIERYQKKTKDIGINS-KIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPC 119
           S+ +TIERYQ+ TKD+  N+ K  E + Q  K E +NM  K+E LE++KRKLLG+GL  C
Sbjct: 61  SMQETIERYQRHTKDVHTNNYKTTEHNMQQLKHEAANMAKKIELLEISKRKLLGEGLGSC 120

Query: 120 TIDELQQLENQLERSLSRIRARKNQLFREQIEKLKEK 156
           +I+ELQQ+E QLERS+S IRARKNQ+F+EQIE+LKEK
Sbjct: 121 SIEELQQIEQQLERSVSSIRARKNQVFKEQIEQLKEK 157

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356563236|ref|XP_003549870.1| PREDICTED: agamous-like MADS-box protein AGL19-like [Glycine max]

 Score =  231 bits (590), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 114/155 (73%), Positives = 136/155 (87%)

Query: 1   MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSC 60
           MVRGKTQMKRIEN TSRQVTFSKRRNGLLKKAFELSVLC+AEVALIIFS RG+LYEFSS 
Sbjct: 1   MVRGKTQMKRIENETSRQVTFSKRRNGLLKKAFELSVLCEAEVALIIFSTRGRLYEFSSS 60

Query: 61  SINKTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCT 120
           S+NKT+ERYQ+K KD+G+++K ++  ++H KE   +M  K+E LE ++RKLLGD L+ C+
Sbjct: 61  SVNKTVERYQRKIKDLGVSNKGIQKKTRHLKEGDMSMAKKIEHLEDSRRKLLGDELDKCS 120

Query: 121 IDELQQLENQLERSLSRIRARKNQLFREQIEKLKE 155
           IDELQQLENQLERSL +IRARKNQLFRE+IE LK+
Sbjct: 121 IDELQQLENQLERSLDKIRARKNQLFRERIENLKQ 155

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15235869|ref|NP_194026.1| agamous-like MADS-box protein AGL19 [Arabidopsis thaliana] gi|12229640|sp|O82743.1|AGL19_ARATH RecName: Full=Agamous-like MADS-box protein AGL19 gi|11545543|gb|AAG37901.1|AF312664_1 MADS-box protein AGL19 [Arabidopsis thaliana] gi|3292820|emb|CAA19810.1| putative MADS Box / AGL protein [Arabidopsis thaliana] gi|7269142|emb|CAB79250.1| putative MADS Box / AGL protein [Arabidopsis thaliana] gi|23296476|gb|AAN13066.1| putative MADS box AGL protein [Arabidopsis thaliana] gi|332659284|gb|AEE84684.1| agamous-like MADS-box protein AGL19 [Arabidopsis thaliana]

 Score =  231 bits (589), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 116/154 (75%), Positives = 136/154 (88%), Gaps = 1/154 (0%)

Query: 1   MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSC 60
           MVRGKT+MKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAL+IFSPR KLYEFSS 
Sbjct: 1   MVRGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALVIFSPRSKLYEFSSS 60

Query: 61  SINKTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCT 120
           SI  TIERYQ++ K+IG N K   D+SQ A++ETS +  K+E LE++KRKLLG+G++ C+
Sbjct: 61  SIAATIERYQRRIKEIGNNHK-RNDNSQQARDETSGLTKKIEQLEISKRKLLGEGIDACS 119

Query: 121 IDELQQLENQLERSLSRIRARKNQLFREQIEKLK 154
           I+ELQQLENQL+RSLSRIRA+K QL RE+IEKLK
Sbjct: 120 IEELQQLENQLDRSLSRIRAKKYQLLREEIEKLK 153

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	160
TAIR|locus:2127213	219	AGL19 "AGAMOUS-like 19" [Arabi	0.956	0.698	0.753	8.6e-56
TAIR|locus:2137070	221	AGL14 "AGAMOUS-like 14" [Arabi	0.968	0.701	0.719	1.1e-53
TAIR|locus:2005522	214	AGL20 "AT2G45660" [Arabidopsis	0.975	0.728	0.685	2.7e-52
UNIPROTKB|Q9ATE9	216	FBP20 "MADS-box transcription	0.956	0.708	0.687	1.3e-50
UNIPROTKB|Q9ATE3	215	FBP28 "MADS-box transcription	0.981	0.730	0.651	2e-49
TAIR|locus:505006709	210	AGL42 "AGAMOUS-like 42" [Arabi	0.975	0.742	0.641	2.5e-49
UNIPROTKB|Q7XUN2	249	MADS17 "MADS-box transcription	0.975	0.626	0.579	2e-40
UNIPROTKB|Q6EU39	250	MADS6 "MADS-box transcription	0.962	0.616	0.573	1.3e-38
TAIR|locus:2140578	256	STK "AT4G09960" [Arabidopsis t	0.987	0.617	0.487	1.5e-37
TAIR|locus:2165386	211	AGL72 "AGAMOUS-like 72" [Arabi	0.975	0.739	0.496	1.9e-37

TAIR|locus:2127213 AGL19 "AGAMOUS-like 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 575 (207.5 bits), Expect = 8.6e-56, P = 8.6e-56
 Identities = 116/154 (75%), Positives = 136/154 (88%)

Query:     1 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSC 60
             MVRGKT+MKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAL+IFSPR KLYEFSS 
Sbjct:     1 MVRGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALVIFSPRSKLYEFSSS 60

Query:    61 SINKTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCT 120
             SI  TIERYQ++ K+IG N K   D+SQ A++ETS +  K+E LE++KRKLLG+G++ C+
Sbjct:    61 SIAATIERYQRRIKEIGNNHKR-NDNSQQARDETSGLTKKIEQLEISKRKLLGEGIDACS 119

Query:   121 IDELQQLENQLERSLSRIRARKNQLFREQIEKLK 154
             I+ELQQLENQL+RSLSRIRA+K QL RE+IEKLK
Sbjct:   120 IEELQQLENQLDRSLSRIRAKKYQLLREEIEKLK 153

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0010048 "vernalization response" evidence=RCA;IMP

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

TAIR|locus:2137070 AGL14 "AGAMOUS-like 14" [Arabidopsis thaliana (taxid:3702)]

 Score = 555 (200.4 bits), Expect = 1.1e-53, P = 1.1e-53
 Identities = 113/157 (71%), Positives = 135/157 (85%)

Query:     1 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSC 60
             MVRGKT+MKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSS 
Sbjct:     1 MVRGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSS 60

Query:    61 S-INKTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPC 119
             S I KT+ERYQK+ +D+G N K   D+SQ +K+ET  +  K+E LE++ RK++G+GL+  
Sbjct:    61 SSIPKTVERYQKRIQDLGSNHKR-NDNSQQSKDETYGLARKIEHLEISTRKMMGEGLDAS 119

Query:   120 TIDELQQLENQLERSLSRIRARKNQLFREQIEKLKEK 156
             +I+ELQQLENQL+RSL +IRA+K QL RE+ EKLKEK
Sbjct:   120 SIEELQQLENQLDRSLMKIRAKKYQLLREETEKLKEK 156

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0010048 "vernalization response" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

TAIR|locus:2005522 AGL20 "AT2G45660" [Arabidopsis thaliana (taxid:3702)]

 Score = 542 (195.9 bits), Expect = 2.7e-52, P = 2.7e-52
 Identities = 107/156 (68%), Positives = 131/156 (83%)

Query:     1 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSC 60
             MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEV+LIIFSP+GKLYEF+S 
Sbjct:     1 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVSLIIFSPKGKLYEFASS 60

Query:    61 SINKTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCT 120
             ++  TI+RY + TKD      + E++ QH K E +NMM K+E LE +KRKLLG+G+  C+
Sbjct:    61 NMQDTIDRYLRHTKDRVSTKPVSEENMQHLKYEAANMMKKIEQLEASKRKLLGEGIGTCS 120

Query:   121 IDELQQLENQLERSLSRIRARKNQLFREQIEKLKEK 156
             I+ELQQ+E QLE+S+  IRARK Q+F+EQIE+LK+K
Sbjct:   121 IEELQQIEQQLEKSVKCIRARKTQVFKEQIEQLKQK 156

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0009911 "positive regulation of flower development" evidence=IMP

GO:0009908 "flower development" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0008134 "transcription factor binding" evidence=IPI

GO:0009409 "response to cold" evidence=IEP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEP

GO:0000060 "protein import into nucleus, translocation" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0009739 "response to gibberellin stimulus" evidence=IEP

GO:0010077 "maintenance of inflorescence meristem identity" evidence=IGI

GO:0010048 "vernalization response" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

UNIPROTKB|Q9ATE9 FBP20 "MADS-box transcription factor FBP20" [Petunia x hybrida (taxid:4102)]

 Score = 526 (190.2 bits), Expect = 1.3e-50, P = 1.3e-50
 Identities = 108/157 (68%), Positives = 130/157 (82%)

Query:     1 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSC 60
             MVRGKTQM+RIENATSRQVTFSKRRNGLLKKAFELSVLCDA+V L+IFSPRGK YEFSS 
Sbjct:     1 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAQVGLVIFSPRGKQYEFSSS 60

Query:    61 SINKTIERYQKKTKD-IGINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPC 119
             S+ + IERY+  TKD +   ++  E + QH   ET+ +M K+EFLE +KRKLLG+GL  C
Sbjct:    61 SMQEIIERYKGHTKDKVQTENQAGEQNLQH---ETAGLMKKIEFLETSKRKLLGEGLGSC 117

Query:   120 TIDELQQLENQLERSLSRIRARKNQLFREQIEKLKEK 156
             T++ELQ++E QLERS+S IRARK Q+F+EQIEKL EK
Sbjct:   118 TLEELQKIEKQLERSVSIIRARKMQVFKEQIEKLNEK 154

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q9ATE3 FBP28 "MADS-box transcription factor FBP28" [Petunia x hybrida (taxid:4102)]

 Score = 515 (186.3 bits), Expect = 2.0e-49, P = 2.0e-49
 Identities = 103/158 (65%), Positives = 132/158 (83%)

Query:     1 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSC 60
             MVRGKTQM+RIENATSRQVTFSKRRNGLLKKAFELSVLCDAEV+LIIFS RGKLYEFSS 
Sbjct:     1 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVSLIIFSTRGKLYEFSSS 60

Query:    61 SINKTIERYQKKTKDI-GINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPC 119
             S+ + IERY++ ++D+ G    + +++ Q+ K + +++M K+E LE +KRKLLG+ L  C
Sbjct:    61 SMQEIIERYRRHSEDVQGEKPAVEQNNMQNLKLDAASLMKKIEILETSKRKLLGEDLGSC 120

Query:   120 TIDELQQLENQLERSLSRIRARKNQLFREQIEKLKEKV 157
             +++ELQQ+E QLERS+S IRARK ++FREQIE+LK  V
Sbjct:   121 SLEELQQIEKQLERSISTIRARKMEVFREQIERLKGNV 158

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:505006709 AGL42 "AGAMOUS-like 42" [Arabidopsis thaliana (taxid:3702)]

 Score = 514 (186.0 bits), Expect = 2.5e-49, P = 2.5e-49
 Identities = 100/156 (64%), Positives = 129/156 (82%)

Query:     1 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSC 60
             MVRGK +MK+IENATSRQVTFSKRRNGLLKKA+ELSVLCDA+++LIIFS RG+LYEFSS 
Sbjct:     1 MVRGKIEMKKIENATSRQVTFSKRRNGLLKKAYELSVLCDAQLSLIIFSQRGRLYEFSSS 60

Query:    61 SINKTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCT 120
              + KTIERY+K TKD   ++   + H Q  K+E S+M+TK+E LE  KRKLLG G+  C+
Sbjct:    61 DMQKTIERYRKYTKDHETSNHDSQIHLQQLKQEASHMITKIELLEFHKRKLLGQGIASCS 120

Query:   121 IDELQQLENQLERSLSRIRARKNQLFREQIEKLKEK 156
             ++ELQ++++QL+RSL ++R RK QLF+EQ+EKLK K
Sbjct:   121 LEELQEIDSQLQRSLGKVRERKAQLFKEQLEKLKAK 156

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009909 "regulation of flower development" evidence=IMP

GO:0009838 "abscission" evidence=IMP

GO:0010150 "leaf senescence" evidence=IMP

GO:0080187 "floral organ senescence" evidence=IMP

GO:0010048 "vernalization response" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

UNIPROTKB|Q7XUN2 MADS17 "MADS-box transcription factor 17" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 430 (156.4 bits), Expect = 2.0e-40, P = 2.0e-40
 Identities = 91/157 (57%), Positives = 113/157 (71%)

Query:     1 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSC 60
             M RG+ ++KRIEN  +RQVTFSKRRNGLLKKA+ELSVLCDAEVALIIFS RGKLYEF S 
Sbjct:     1 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA 60

Query:    61 SINKTIERYQKKTKDI-GINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPC 119
              INKT+E+Y     +  G NS +     Q   +E S + TKLE L+ ++R +LG+ L P 
Sbjct:    61 GINKTLEKYNSCCYNAQGSNSALAGGEHQSWYQEMSRLKTKLECLQRSQRHMLGEDLGPL 120

Query:   120 TIDELQQLENQLERSLSRIRARKNQLFREQIEKLKEK 156
             +I ELQQLE QLE SLS+ R RK Q+  EQ++ L+ K
Sbjct:   121 SIKELQQLEKQLEYSLSQARQRKTQIMMEQVDDLRRK 157

GO:0010093 "specification of floral organ identity" evidence=IMP

UNIPROTKB|Q6EU39 MADS6 "MADS-box transcription factor 6" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
 Identities = 90/157 (57%), Positives = 111/157 (70%)

Query:     1 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSC 60
             M RG+ ++KRIEN  +RQVTFSKRRNGLLKKA+ELSVLCDAEVALIIFS RGKLYEF S 
Sbjct:     1 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA 60

Query:    61 SINKTIERYQKKTKDI-GINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPC 119
              I KT+ERYQ    +    N+ + E  S +   E S +  K E L+  +R LLG+ L P 
Sbjct:    61 GITKTLERYQHCCYNAQDSNNALSETQSWY--HEMSKLKAKFEALQRTQRHLLGEDLGPL 118

Query:   120 TIDELQQLENQLERSLSRIRARKNQLFREQIEKLKEK 156
             ++ ELQQLE QLE +LS+ R RK QL  EQ+E+L+ K
Sbjct:   119 SVKELQQLEKQLECALSQARQRKTQLMMEQVEELRRK 155

GO:0005515 "protein binding" evidence=IPI

GO:0010022 "meristem determinacy" evidence=IMP

GO:0010093 "specification of floral organ identity" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

TAIR|locus:2140578 STK "AT4G09960" [Arabidopsis thaliana (taxid:3702)]

 Score = 403 (146.9 bits), Expect = 1.5e-37, P = 1.5e-37
 Identities = 77/158 (48%), Positives = 121/158 (76%)

Query:     1 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSC 60
             M RGK ++KRIEN+T+RQVTF KRRNGLLKKA+ELSVLCDAEVALI+FS RG+LYE+++ 
Sbjct:    27 MGRGKIEIKRIENSTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANN 86

Query:    61 SINKTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCT 120
             +I  TIERY+K   D    S + E ++ + ++E++ +  +++ ++ + R L+GD L   +
Sbjct:    87 NIRSTIERYKKACSDSTNTSTVQEINAAYYQQESAKLRQQIQTIQNSNRNLMGDSLSSLS 146

Query:   121 IDELQQLENQLERSLSRIRARKNQLFREQIEKLKEKVI 158
             + EL+Q+EN+LE+++SRIR++K++L   +IE  +++ I
Sbjct:   147 VKELKQVENRLEKAISRIRSKKHELLLVEIENAQKREI 184

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0005515 "protein binding" evidence=IPI

GO:0048440 "carpel development" evidence=IMP

GO:0048481 "ovule development" evidence=IGI;RCA;IMP

GO:0048316 "seed development" evidence=IGI

GO:0080155 "regulation of double fertilization forming a zygote and endosperm" evidence=IGI

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0009886 "post-embryonic morphogenesis" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0048441 "petal development" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0048507 "meristem development" evidence=RCA

TAIR|locus:2165386 AGL72 "AGAMOUS-like 72" [Arabidopsis thaliana (taxid:3702)]

 Score = 402 (146.6 bits), Expect = 1.9e-37, P = 1.9e-37
 Identities = 78/157 (49%), Positives = 114/157 (72%)

Query:     1 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSC 60
             MVRGK ++K+IEN TSRQVTFSKRR+GL KKA ELSVLCDA+VA +IFS +G+LYEF+S 
Sbjct:     1 MVRGKIEIKKIENVTSRQVTFSKRRSGLFKKAHELSVLCDAQVAAMIFSQKGRLYEFASS 60

Query:    61 SINKTIERYQKKTKDIGI-NSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPC 119
              I  TI+RY +  ++  +  +  +E + Q  K+E   M+ K+E LEV  RK++G  L+ C
Sbjct:    61 DIRNTIKRYAEYKREYFVAETHPIEQYVQGLKKEMVTMVKKIEVLEVHNRKMMGQSLDSC 120

Query:   120 TIDELQQLENQLERSLSRIRARKNQLFREQIEKLKEK 156
             ++ EL ++  Q+E+SL  +R RK +L+ ++++KLK K
Sbjct:   121 SVKELSEIATQIEKSLHMVRLRKAKLYEDELQKLKAK 157

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009909 "regulation of flower development" evidence=IMP

GO:0010048 "vernalization response" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O82743	AGL19_ARATH	No assigned EC number	0.7532	0.9562	0.6986	yes	no
Q9XJ60	MAD50_ORYSJ	No assigned EC number	0.6602	0.9687	0.6739	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: grail3.0008056401 hypothetical protein (170 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	160
cd00265	77	cd00265, MADS_MEF2_like, MEF2 (myocyte enhancer fa	4e-42
smart00432	59	smart00432, MADS, MADS domain	2e-31
cd00120	59	cd00120, MADS, MADS: MCM1, Agamous, Deficiens, and	3e-30
cd00266	83	cd00266, MADS_SRF_like, SRF-like/Type I subfamily	2e-24
pfam00319	51	pfam00319, SRF-TF, SRF-type transcription factor (	1e-23
pfam01486	100	pfam01486, K-box, K-box region	2e-18
COG5068	412	COG5068, ARG80, Regulator of arginine metabolism a	1e-10

>gnl|CDD|238165 cd00265, MADS_MEF2_like, MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

 Score =  134 bits (340), Expect = 4e-42
 Identities = 57/69 (82%), Positives = 62/69 (89%)

Query: 3  RGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSI 62
          RGK ++KRIEN+T+RQVTFSKRRNGLLKKA ELSVLCDAEVALIIFS  GKLYEFSS S+
Sbjct: 2  RGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEFSSPSM 61

Query: 63 NKTIERYQK 71
           K IERYQK
Sbjct: 62 EKIIERYQK 70

Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 77

>gnl|CDD|197721 smart00432, MADS, MADS domain

 Score =  106 bits (268), Expect = 2e-31
 Identities = 46/57 (80%), Positives = 51/57 (89%)

Query: 3  RGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSS 59
          R K ++KRIEN T+RQVTFSKRRNGL KKA ELSVLCDAEVALI+FSP GKLYEF+S
Sbjct: 2  RRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFAS 58

Length = 59

>gnl|CDD|238067 cd00120, MADS, MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators

 Score =  104 bits (261), Expect = 3e-30
 Identities = 47/57 (82%), Positives = 51/57 (89%)

Query: 3  RGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSS 59
          RGK ++KRIEN TSRQVTFSKRRNGL KKA ELSVLCDAEVA+I+FSP GKLYEF S
Sbjct: 2  RGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFWS 58

Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 59

>gnl|CDD|238166 cd00266, MADS_SRF_like, SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

 Score = 90.0 bits (224), Expect = 2e-24
 Identities = 40/73 (54%), Positives = 49/73 (67%), Gaps = 1/73 (1%)

Query: 3  RGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEF-SSCS 61
          R K ++KRIEN   R VTFSKRR GL KKA ELS LC AEVA+I++SP GKLY F  S  
Sbjct: 2  RKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWPSSE 61

Query: 62 INKTIERYQKKTK 74
          +   I R++  + 
Sbjct: 62 VEGVISRFEVLSA 74

Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 83

>gnl|CDD|109379 pfam00319, SRF-TF, SRF-type transcription factor (DNA-binding and dimerisation domain)

 Score = 87.1 bits (216), Expect = 1e-23
 Identities = 41/51 (80%), Positives = 46/51 (90%)

Query: 9  KRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSS 59
          KRIEN ++RQVTFSKRRNG+ KKA ELSVLCDAEVA+IIFS  GKLYE+SS
Sbjct: 1  KRIENKSNRQVTFSKRRNGIFKKAHELSVLCDAEVAVIIFSSTGKLYEYSS 51

Length = 51

>gnl|CDD|216525 pfam01486, K-box, K-box region

 Score = 74.9 bits (185), Expect = 2e-18
 Identities = 30/75 (40%), Positives = 47/75 (62%)

Query: 84  EDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCTIDELQQLENQLERSLSRIRARKN 143
           E   ++ ++E + +  + E L+  +R LLG+ L   ++ ELQQLE QLE  L  IR+RKN
Sbjct: 11  ESKYENLQQEAAKLKKQNENLQREQRHLLGEDLGSLSLKELQQLEQQLENGLKHIRSRKN 70

Query: 144 QLFREQIEKLKEKVI 158
           +L   QIE+L++K  
Sbjct: 71  ELLLNQIEELQKKER 85

The K-box region is commonly found associated with SRF-type transcription factors see pfam00319. The K-box is a possible coiled-coil structure. Possible role in multimer formation. Length = 100

>gnl|CDD|227400 COG5068, ARG80, Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

 Score = 58.1 bits (140), Expect = 1e-10
 Identities = 27/59 (45%), Positives = 38/59 (64%)

Query: 1   MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSS 59
           +   K  +  I N T R VTFSKR++G+ KKAFELSVL   EV L++ S  G ++ F++
Sbjct: 81  VTGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTFTT 139

Length = 412

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	160
KOG0014	195	consensus MADS box transcription factor [Transcrip	100.0
cd00265	77	MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-li	100.0
cd00266	83	MADS_SRF_like SRF-like/Type I subfamily of MADS (M	99.98
smart00432	59	MADS MADS domain.	99.97
cd00120	59	MADS MADS: MCM1, Agamous, Deficiens, and SRF (seru	99.97
PF00319	51	SRF-TF: SRF-type transcription factor (DNA-binding	99.95
KOG0015	338	consensus Regulator of arginine metabolism and rel	99.86
PF01486	100	K-box: K-box region; InterPro: IPR002487 MADS gene	99.7
COG5068	412	ARG80 Regulator of arginine metabolism and related	99.58
PRK04098	158	sec-independent translocase; Provisional	92.13
PF10584	23	Proteasome_A_N: Proteasome subunit A N-terminal si	90.78
PF06698	59	DUF1192: Protein of unknown function (DUF1192); In	85.81
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	81.59

>KOG0014 consensus MADS box transcription factor [Transcription]

Probab=100.00  E-value=8.9e-40  Score=243.67  Aligned_cols=157  Identities=46%  Similarity=0.660  Sum_probs=127.0

Q ss_pred             CCccccceeeecCCCCccccccccccchhhhhhhhhcccCcceeeeeecCCCCcccccccc--hhhHHHHhhhccccccc
Q 031392            1 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCS--INKTIERYQKKTKDIGI   78 (160)
Q Consensus         1 M~R~ki~i~~I~~~~~R~~tf~kR~~gl~KKa~ELs~LC~~~v~~iv~s~~gk~~~~~s~~--~~~il~RY~~~~~~~~~   78 (160)
                      |||+||+|++|+|+++|+|||+|||+||||||+||||||||+||+|||||+|++|+|++|+  +..|+++|...+.....
T Consensus         1 M~R~ki~i~~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCd~eiavIifsp~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~   80 (195)
T KOG0014|consen    1 MGRGKIEIKRIENESSRQVTFSKRRNGLFKKASELSVLCDAEIAVIVFSPSGKLYEFGSSDESVDAVVDRFLNLTEPSRK   80 (195)
T ss_pred             CCCCccceeeccccchhhhhhHHHHhhHHHHHHHHHHhcCCeEEEEEECCCCCccccCCcchhHHHHHHHHHhhhhhhhc
Confidence            9999999999999999999999999999999999999999999999999999999999986  99999999998776554


Q ss_pred             CCcchhhh-h-------------------hHHHHHHhhhhhHHHHHHH---HHHHhhCCCCCCCCH-HHHHHHHHHHHHH
Q 031392           79 NSKIVEDH-S-------------------QHAKEETSNMMTKLEFLEV---AKRKLLGDGLEPCTI-DELQQLENQLERS  134 (160)
Q Consensus        79 ~~~~~~~~-~-------------------e~l~~e~~kl~~~~~~l~~---~~r~~~g~~l~~Ls~-~eL~~Le~~Le~~  134 (160)
                      ........ .                   +........+....+.+..   ..+++.|+++.+++. .+|..++.+++..
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~l~~~~~~l~~~  160 (195)
T KOG0014|consen   81 KKRVNLESFLRNKKLTELVEEEEKEELKLQLKKSLESSLKVDPEDLELLELEQRKLTGEDLQSLSSLNELNSLESQLESS  160 (195)
T ss_pred             ccccchhhHhhhhhhhcccchhhhhhccchhhhhhhhhhhcchhhhhhhHHHHHHHhccccccCCHHHHhcchhhHHHHh
Confidence            43321111 0                   1123344445555555543   367889999999999 9999999999999


Q ss_pred             HHHHHHHHHHHHHHHHH-HHHHHH
Q 031392          135 LSRIRARKNQLFREQIE-KLKEKV  157 (160)
Q Consensus       135 l~~Vr~RK~~ll~~~~~-~l~~k~  157 (160)
                      +..++..+...+.+++. .++.++
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~  184 (195)
T KOG0014|consen  161 LHNSRSSKSKPLSDSNFQVLQEKE  184 (195)
T ss_pred             hcCCCCCCCcCCcchhhhhhcccc
Confidence            99999998887777665 444443

>cd00265 MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

Probab=100.00  E-value=1.3e-36  Score=194.30  Aligned_cols=75  Identities=76%  Similarity=1.040  Sum_probs=72.5

Q ss_pred             CccccceeeecCCCCccccccccccchhhhhhhhhcccCcceeeeeecCCCCcccccccchhhHHHHhhhccccc
Q 031392            2 VRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERYQKKTKDI   76 (160)
Q Consensus         2 ~R~ki~i~~I~~~~~R~~tf~kR~~gl~KKa~ELs~LC~~~v~~iv~s~~gk~~~~~s~~~~~il~RY~~~~~~~   76 (160)
                      ||+||+|++|+|+.+|++||+||++||||||+|||+||||+||+|||||+|++|+|+||++++||+||.+.++..
T Consensus         1 gr~ki~i~~i~~~~~r~~tf~kR~~gl~kKa~Els~Lc~~~v~lvv~sp~gk~~~f~s~s~~~vl~ry~~~~~~~   75 (77)
T cd00265           1 GRGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEFSSPSMEKIIERYQKTSGSS   75 (77)
T ss_pred             CCCcceeEEecCccHHHHHHHHhhhhhhhcceeheeccCCceeEEEEcCCCceEEecCCCHHHHHHHHHhccccc
Confidence            899999999999999999999999999999999999999999999999999999999999999999999987654

Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>cd00266 MADS_SRF_like SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

Probab=99.98  E-value=1.7e-33  Score=182.57  Aligned_cols=78  Identities=51%  Similarity=0.732  Sum_probs=72.9

Q ss_pred             CccccceeeecCCCCccccccccccchhhhhhhhhcccCcceeeeeecCCCCcccccccc-hhhHHHHhhhcccccccC
Q 031392            2 VRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCS-INKTIERYQKKTKDIGIN   79 (160)
Q Consensus         2 ~R~ki~i~~I~~~~~R~~tf~kR~~gl~KKa~ELs~LC~~~v~~iv~s~~gk~~~~~s~~-~~~il~RY~~~~~~~~~~   79 (160)
                      ||+||+|++|+|+.+|++||+||+.||||||+||||||||+||+|||||+|+.++|++++ +..++++|...+...+..
T Consensus         1 gr~Ki~i~~I~~~~~R~~tf~KRk~gl~kKa~ELs~Lc~~~v~~iv~sp~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~   79 (83)
T cd00266           1 GRKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWPSSEVEGVISRFEVLSALERKK   79 (83)
T ss_pred             CCccceeEEeeccchhhhhHHHhhhhHHHHHHHHHHhhCCcEEEEEECCCCCcceecCcHHHHHHHHHHhhcCHhhhhc
Confidence            899999999999999999999999999999999999999999999999999999988765 999999999988765543

Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>smart00432 MADS MADS domain

Probab=99.97  E-value=1.3e-32  Score=166.36  Aligned_cols=59  Identities=78%  Similarity=1.100  Sum_probs=58.0

Q ss_pred             CccccceeeecCCCCccccccccccchhhhhhhhhcccCcceeeeeecCCCCccccccc
Q 031392            2 VRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSC   60 (160)
Q Consensus         2 ~R~ki~i~~I~~~~~R~~tf~kR~~gl~KKa~ELs~LC~~~v~~iv~s~~gk~~~~~s~   60 (160)
                      ||+||+|++|+|+++|++||+||+.||||||+|||+||||+||+|||||+|++|+|++|
T Consensus         1 gR~Ki~i~~I~~~~~R~~tf~kRk~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~p   59 (59)
T smart00432        1 GRRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFASP   59 (59)
T ss_pred             CCCcceeEEeeCcchhhhhhHhhhhhHHHHHHHHhhccCCeEEEEEECCCCCeeeccCC
Confidence            89999999999999999999999999999999999999999999999999999999886

>cd00120 MADS MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators

Probab=99.97  E-value=6.9e-32  Score=163.34  Aligned_cols=59  Identities=80%  Similarity=1.116  Sum_probs=57.7

Q ss_pred             CccccceeeecCCCCccccccccccchhhhhhhhhcccCcceeeeeecCCCCccccccc
Q 031392            2 VRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSC   60 (160)
Q Consensus         2 ~R~ki~i~~I~~~~~R~~tf~kR~~gl~KKa~ELs~LC~~~v~~iv~s~~gk~~~~~s~   60 (160)
                      ||+||+|++|+|+..|++||+||++||||||+|||+||||+||+|||||+|++++|++|
T Consensus         1 gr~Ki~i~~I~~~~~R~~tf~kR~~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~~   59 (59)
T cd00120           1 GRGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFWSS   59 (59)
T ss_pred             CCccceeEEeeCcchhhhhHHHHhchHHHhhhhheeccCCcEEEEEECCCCCcccccCC
Confidence            79999999999999999999999999999999999999999999999999999999875

Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>PF00319 SRF-TF: SRF-type transcription factor (DNA-binding and dimerisation domain); InterPro: IPR002100 Human serum response factor (SRF) is a ubiquitous nuclear protein important for cell proliferation and differentiation

Probab=99.95  E-value=3.5e-30  Score=150.96  Aligned_cols=51  Identities=69%  Similarity=1.072  Sum_probs=47.0

Q ss_pred             eeecCCCCccccccccccchhhhhhhhhcccCcceeeeeecCCCCcccccc
Q 031392            9 KRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSS   59 (160)
Q Consensus         9 ~~I~~~~~R~~tf~kR~~gl~KKa~ELs~LC~~~v~~iv~s~~gk~~~~~s   59 (160)
                      |+|+|++.|++||+||+.||||||.|||+||||+||+|||||+|++|+|||
T Consensus         1 K~I~n~~~R~~tf~KRk~gL~KKa~ELs~LC~~~v~~iv~~~~g~~~~f~s   51 (51)
T PF00319_consen    1 KRIENKSRRKVTFSKRKKGLFKKASELSTLCGVDVALIVFSPDGKLYTFPS   51 (51)
T ss_dssp             S--SSHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEEETTSEEEEEES
T ss_pred             CCccchhHhHhHHHHHHhhhhhccceeeeecCCeEEEEEECCCCCEEEecC
Confidence            589999999999999999999999999999999999999999999999986

SRF function is essential for transcriptional regulation of numerous growth-factor-inducible genes, such as c-fos oncogene and muscle-specific actin genes. A core domain of around 90 amino acids is sufficient for the activities of DNA-binding, dimerisation and interaction with accessory factors. Within the core is a DNA-binding region, designated the MADS box [], that is highly similar to many eukaryotic regulatory proteins: among these are MCM1, the regulator of cell type-specific genes in fission yeast; DSRF, a Drosophila trachea development factor; the MEF2 family of myocyte-specific enhancer factors; and the Agamous and Deficiens families of plant homeotic proteins. In SRF, the MADS box has been shown to be involved in DNA-binding and dimerisation []. Proteins belonging to the MADS family function as dimers, the primary DNA-binding element of which is an anti-parallel coiled coil of two amphipathic alpha-helices, one from each subunit. The DNA wraps around the coiled coil allowing the basic N-termini of the helices to fit into the DNA major groove. The chain extending from the helix N-termini reaches over the DNA backbone and penetrates into the minor groove. A 4-stranded, anti-parallel beta-sheet packs against the coiled-coil face opposite the DNA and is the central element of the dimerisation interface. The MADS-box domain is commonly found associated with K-box region see IPR002487 from INTERPRO ; GO: 0003677 DNA binding, 0046983 protein dimerization activity; PDB: 1MNM_B 1N6J_A 1TQE_S 3MU6_D 3P57_I 1EGW_A 1C7U_B 3KOV_A 1HBX_A 1K6O_C ....

>KOG0015 consensus Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

Probab=99.86  E-value=6.4e-23  Score=157.09  Aligned_cols=75  Identities=37%  Similarity=0.553  Sum_probs=66.8

Q ss_pred             CccccceeeecCCCCccccccccccchhhhhhhhhcccCcceeeeeecCCCCcccccccchhh---------HHHHhhhc
Q 031392            2 VRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINK---------TIERYQKK   72 (160)
Q Consensus         2 ~R~ki~i~~I~~~~~R~~tf~kR~~gl~KKa~ELs~LC~~~v~~iv~s~~gk~~~~~s~~~~~---------il~RY~~~   72 (160)
                      ||+||+|++|+|+..|.+||+|||.|+||||+|||||+|.+|-|+|.|.+|.+|+|+.|.++.         +|....+.
T Consensus        63 gr~kik~eyIenK~rR~~tFSKRK~GImKKAyELs~LTGtqVllLVaSEtGhVyTFaTpKLep~i~s~~Gk~lIq~cLn~  142 (338)
T KOG0015|consen   63 GRVKIKMEYIENKLRRYVTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATPKLEPMITSDEGKALIQACLNA  142 (338)
T ss_pred             ceeeccchhhcccceeeeeehhhhhhhHHHHHHhhhcccceEEEEEEecCcceEEeccccccccccchhhHHHHHHHhcC
Confidence            799999999999999999999999999999999999999999999999999999999985544         55555665


Q ss_pred             cccc
Q 031392           73 TKDI   76 (160)
Q Consensus        73 ~~~~   76 (160)
                      +...
T Consensus       143 pd~~  146 (338)
T KOG0015|consen  143 PDTP  146 (338)
T ss_pred             CCCC
Confidence            5544

>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development

Probab=99.70  E-value=1.1e-16  Score=107.39  Aligned_cols=77  Identities=40%  Similarity=0.605  Sum_probs=73.6

Q ss_pred             hhhhhHHHHHHhhhhhHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 031392           84 EDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCTIDELQQLENQLERSLSRIRARKNQLFREQIEKLKEKVITF  160 (160)
Q Consensus        84 ~~~~e~l~~e~~kl~~~~~~l~~~~r~~~g~~l~~Ls~~eL~~Le~~Le~~l~~Vr~RK~~ll~~~~~~l~~k~~~l  160 (160)
                      ....+.++.++.+++.+++.++..+|++.|+++++||++||..||..|+.+|..||+||.+++++++..|++|++.|
T Consensus        11 ~~~~e~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l   87 (100)
T PF01486_consen   11 DSQHEELQQEIAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLESALKRVRSRKDQLLMEQIEELKKKEREL   87 (100)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46678899999999999999999999999999999999999999999999999999999999999999999999754

The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>COG5068 ARG80 Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

Probab=99.58  E-value=7e-16  Score=123.39  Aligned_cols=68  Identities=40%  Similarity=0.593  Sum_probs=63.4

Q ss_pred             CCccccceeeecCCCCccccccccccchhhhhhhhhcccCcceeeeeecCCCCcccccccchhhHHHH
Q 031392            1 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIER   68 (160)
Q Consensus         1 M~R~ki~i~~I~~~~~R~~tf~kR~~gl~KKa~ELs~LC~~~v~~iv~s~~gk~~~~~s~~~~~il~R   68 (160)
                      |||+||.|.+|+|+.+|.|||+||+.|++|||+||++|.|.+|.++|.|.+|.+++|+.|..+.|+.-
T Consensus        81 ~~~~~~~is~i~nk~~r~vtf~Krk~gI~kka~ElsvLt~~~vl~lvise~g~v~tf~tp~~e~v~~~  148 (412)
T COG5068          81 VTGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTFTTPKLESVVKS  148 (412)
T ss_pred             cccccCCcccccCcccccchhhhhhhhhhhhhhhhhhccCCceEEEEecCCCceeeecCCcccccccc
Confidence            78999999999999999999999999999999999999999999999999999999999865555443

>PRK04098 sec-independent translocase; Provisional

Probab=92.13  E-value=0.12  Score=37.30  Aligned_cols=85  Identities=24%  Similarity=0.219  Sum_probs=46.1

Q ss_pred             ceeeeeecCCCCcccccccchhhHHHHhhhcccccccCCcchhhhhhHHHHHHhhhhhHHHHHHHHHHHhhCCCCCCCCH
Q 031392           42 EVALIIFSPRGKLYEFSSCSINKTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCTI  121 (160)
Q Consensus        42 ~v~~iv~s~~gk~~~~~s~~~~~il~RY~~~~~~~~~~~~~~~~~~e~l~~e~~kl~~~~~~l~~~~r~~~g~~l~~Ls~  121 (160)
                      =||||||+|. +++..+-. +...+..|++........ ...+-.+..++.+..+.++.++......+.       .+++
T Consensus        14 vVaLlvfGP~-KLP~~~r~-lGk~ir~~K~~~~~~k~~-l~~Ei~~~elk~e~~k~k~~l~~~~~~l~~-------~~~~   83 (158)
T PRK04098         14 VVAIIFLGPD-KLPQAMVD-IAKFFKAVKKTINDAKST-LDKEINIEEIKEEALKYKKEFESAVESLKK-------KLKF   83 (158)
T ss_pred             HHHHhhcCch-HHHHHHHH-HHHHHHHHHHHHHHHHHH-HHHHHhhHHHHHHHHHHHHHHHHHHHHHHh-------ccCh
Confidence            4789999995 55544332 444555555543322110 000123445666667776666666655542       2677


Q ss_pred             HHHHHHHHHHHHHHH
Q 031392          122 DELQQLENQLERSLS  136 (160)
Q Consensus       122 ~eL~~Le~~Le~~l~  136 (160)
                      ++|.++-..+.....
T Consensus        84 eel~~~~~~~~~~~~   98 (158)
T PRK04098         84 EELDDLKITAENEIK   98 (158)
T ss_pred             HHHHHHhhhhhhcch
Confidence            777777655554333

>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3

Probab=90.78  E-value=0.075  Score=25.69  Aligned_cols=14  Identities=36%  Similarity=0.888  Sum_probs=11.1

Q ss_pred             eeeeeecCCCCccc
Q 031392           43 VALIIFSPRGKLYE   56 (160)
Q Consensus        43 v~~iv~s~~gk~~~   56 (160)
                      ..+.+|||+|+++.
T Consensus         3 ~~~t~FSp~Grl~Q   16 (23)
T PF10584_consen    3 RSITTFSPDGRLFQ   16 (23)
T ss_dssp             SSTTSBBTTSSBHH
T ss_pred             CCceeECCCCeEEe
Confidence            45678999999874

4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....

>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length

Probab=85.81  E-value=2.3  Score=25.53  Aligned_cols=35  Identities=23%  Similarity=0.399  Sum_probs=27.8

Q ss_pred             HhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 031392          110 KLLGDGLEPCTIDELQQLENQLERSLSRIRARKNQ  144 (160)
Q Consensus       110 ~~~g~~l~~Ls~~eL~~Le~~Le~~l~~Vr~RK~~  144 (160)
                      +..|.+|+.||++||.+-...|+.-+.+++.-...
T Consensus        12 ~~ig~dLs~lSv~EL~~RIa~L~aEI~R~~~~~~~   46 (59)
T PF06698_consen   12 HEIGEDLSLLSVEELEERIALLEAEIARLEAAIAK   46 (59)
T ss_pred             cccCCCchhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45688999999999999888888887777765433

The function of this family is unknown.

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=81.59  E-value=15  Score=26.48  Aligned_cols=54  Identities=26%  Similarity=0.374  Sum_probs=31.9

Q ss_pred             HHHHHHhhhhhHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 031392           89 HAKEETSNMMTKLEFLEVAKRKLLGDGLEPCTIDELQQLENQLERSLSRIRARKN  143 (160)
Q Consensus        89 ~l~~e~~kl~~~~~~l~~~~r~~~g~~l~~Ls~~eL~~Le~~Le~~l~~Vr~RK~  143 (160)
                      .+...+..+..+++.++..+..+-+ +-...+.+|...++.......+..+.||.
T Consensus       113 el~~~i~~l~~e~~~l~~kL~~l~~-~~~~vs~ee~~~~~~~~~~~~k~w~kRKr  166 (169)
T PF07106_consen  113 ELREEIEELEEEIEELEEKLEKLRS-GSKPVSPEEKEKLEKEYKKWRKEWKKRKR  166 (169)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555555555555555544444 33336677777777777777777776663

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	160
3kov_A	90	Structure Of Mef2a Bound To Dna Reveals A Completel		2e-15
1c7u_A	85	Complex Of The Dna Binding Core Domain Of The Trans		3e-15
1egw_A	77	Crystal Structure Of Mef2a Core Bound To Dna Length		3e-15
3mu6_A	71	Inhibiting The Binding Of Class Iia Histone Deacety		3e-15
1tqe_P	93	Mechanism Of Recruitment Of Class Ii Histone Deacet		7e-15
1n6j_A	93	Structural Basis Of Sequence-Specific Recruitment O		2e-14
1mnm_A	100	Yeast Matalpha2MCM1DNA TERNARY TRANSCRIPTION COMPLE		4e-11
1srs_A	92	Serum Response Factor (Srf) Core Complexed With Spe		6e-08
1k6o_B	103	Crystal Structure Of A Ternary Sap-1SRFC-Fos Sre Dn		8e-08

>pdb|3KOV|A Chain A, Structure Of Mef2a Bound To Dna Reveals A Completely Folded Mads-BoxMEF2 DOMAIN THAT RECOGNIZES DNA AND RECRUITS Transcription Co-Factors Length = 90

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 40/84 (47%), Positives = 60/84 (71%), Gaps = 2/84 (2%)
Query: 3  RGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSI 62
          R K Q+ RI +  +RQVTF+KR+ GL+KKA+ELSVLCD E+ALIIF+   KL++++S  +
Sbjct: 2  RKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDM 61
Query: 63 NKTIERYQK--KTKDIGINSKIVE 84
          +K + +Y +  +  +   NS IVE
Sbjct: 62 DKVLLKYTEYNEPHESRTNSDIVE 85

>pdb|1C7U|A Chain A, Complex Of The Dna Binding Core Domain Of The Transcription Factor Mef2a With A 20mer Oligonucleotide Length = 85

Iteration: 1
 Score = 77.8 bits (190), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 40/84 (47%), Positives = 60/84 (71%), Gaps = 2/84 (2%)
Query: 3  RGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSI 62
          R K Q+ RI +  +RQVTF+KR+ GL+KKA+ELSVL DAE+ALIIF+   KL++++S  +
Sbjct: 2  RKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLADAEIALIIFNSSNKLFQYASTDM 61
Query: 63 NKTIERYQK--KTKDIGINSKIVE 84
          +K + +Y +  +  +   NS IVE
Sbjct: 62 DKVLLKYTEYNEPHESRTNSDIVE 85

>pdb|1EGW|A Chain A, Crystal Structure Of Mef2a Core Bound To Dna Length = 77

Iteration: 1
 Score = 77.4 bits (189), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 35/67 (52%), Positives = 52/67 (77%)
Query: 3  RGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSI 62
          R K Q+ RI +  +RQVTF+KR+ GL+KKA+ELSVLCD E+ALIIF+   KL++++S  +
Sbjct: 2  RKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDM 61
Query: 63 NKTIERY 69
          +K + +Y
Sbjct: 62 DKVLLKY 68

>pdb|3MU6|A Chain A, Inhibiting The Binding Of Class Iia Histone Deacetylases To Myocyte Enhancer Factor-2 By Small Molecules Length = 71

Iteration: 1
 Score = 77.4 bits (189), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 35/67 (52%), Positives = 52/67 (77%)
Query: 3  RGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSI 62
          R K Q+ RI +  +RQVTF+KR+ GL+KKA+ELSVLCD E+ALIIF+   KL++++S  +
Sbjct: 2  RKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDM 61
Query: 63 NKTIERY 69
          +K + +Y
Sbjct: 62 DKVLLKY 68

>pdb|1TQE|P Chain P, Mechanism Of Recruitment Of Class Ii Histone Deacetylases By Myocyte Enhancer Factor-2 Length = 93

Iteration: 1
 Score = 76.3 bits (186), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 34/69 (49%), Positives = 53/69 (76%)
Query: 1  MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSC 60
          M R K Q+ RI +  +RQVTF+KR+ GL+KKA+ELSVLCD E+ALIIF+   +L++++S 
Sbjct: 1  MGRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQYAST 60
Query: 61 SINKTIERY 69
           +++ + +Y
Sbjct: 61 DMDRVLLKY 69

>pdb|1N6J|A Chain A, Structural Basis Of Sequence-Specific Recruitment Of Histone Deacetylases By Myocyte Enhancer Factor-2 Length = 93

Iteration: 1
 Score = 74.7 bits (182), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 33/67 (49%), Positives = 52/67 (77%)
Query: 3  RGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSI 62
          R K Q+ RI +  +RQVTF+KR+ GL+KKA+ELSVLCD E+ALIIF+   +L++++S  +
Sbjct: 2  RKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQYASTDM 61
Query: 63 NKTIERY 69
          ++ + +Y
Sbjct: 62 DRVLLKY 68

>pdb|1MNM|A Chain A, Yeast Matalpha2MCM1DNA TERNARY TRANSCRIPTION COMPLEX Crystal Structure Length = 100

Iteration: 1
 Score = 63.9 bits (154), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 31/57 (54%), Positives = 42/57 (73%)
Query: 3  RGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSS 59
          R K ++K IEN T R VTFSKR++G++KKAFELSVL   +V L++ S  G +Y FS+
Sbjct: 18 RRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFST 74

>pdb|1SRS|A Chain A, Serum Response Factor (Srf) Core Complexed With Specific Sre Dna Length = 92

Iteration: 1
 Score = 53.1 bits (126), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 38/57 (66%)
Query: 3  RGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSS 59
          R K +M+ I+N   R  TFSKR+ G++KKA+ELS L   +V L++ S  G +Y F++
Sbjct: 12 RVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFAT 68

>pdb|1K6O|B Chain B, Crystal Structure Of A Ternary Sap-1SRFC-Fos Sre Dna Complex Length = 103

Iteration: 1
 Score = 52.8 bits (125), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 38/57 (66%)
Query: 3  RGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSS 59
          R K +M+ I+N   R  TFSKR+ G++KKA+ELS L   +V L++ S  G +Y F++
Sbjct: 11 RVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFAT 67

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	160
3p57_A	90	Myocyte-specific enhancer factor 2A; protein-DNA c	5e-40
1egw_A	77	MADS box transcription enhancer factor 2, polypept	7e-40
1hbx_A	92	SRF, serum response factor; gene regulation, trans	4e-39
1mnm_A	100	Protein (MCM1 transcriptional regulator); transcri	1e-38
1k6o_B	103	SRF, serum response factor; protein/DNA complex, t	2e-38

>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A Length = 90

 Score =  129 bits (325), Expect = 5e-40
 Identities = 35/73 (47%), Positives = 54/73 (73%)

Query: 3  RGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSI 62
          R K Q+ RI +  +RQVTF+KR+ GL+KKA+ELSVLCD E+ALIIF+   KL++++S  +
Sbjct: 2  RKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDM 61

Query: 63 NKTIERYQKKTKD 75
          +K + +Y +  + 
Sbjct: 62 DKVLLKYTEYNEP 74

>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A* Length = 77

 Score =  128 bits (324), Expect = 7e-40
 Identities = 35/73 (47%), Positives = 54/73 (73%)

Query: 3  RGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSI 62
          R K Q+ RI +  +RQVTF+KR+ GL+KKA+ELSVLCD E+ALIIF+   KL++++S  +
Sbjct: 2  RKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDM 61

Query: 63 NKTIERYQKKTKD 75
          +K + +Y +  + 
Sbjct: 62 DKVLLKYTEYNEP 74

>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A* Length = 92

 Score =  127 bits (320), Expect = 4e-39
 Identities = 27/73 (36%), Positives = 41/73 (56%)

Query: 1  MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSC 60
            R K +M+ I+N   R  TFSKR+ G++KKA+ELS L   +V L++ S  G +Y F++ 
Sbjct: 10 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATR 69

Query: 61 SINKTIERYQKKT 73
           +   I     K 
Sbjct: 70 KLQPMITSETGKA 82

>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1 Length = 100

 Score =  126 bits (317), Expect = 1e-38
 Identities = 31/73 (42%), Positives = 46/73 (63%)

Query: 1  MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSC 60
            R K ++K IEN T R VTFSKR++G++KKAFELSVL   +V L++ S  G +Y FS+ 
Sbjct: 16 KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTP 75

Query: 61 SINKTIERYQKKT 73
               + + + + 
Sbjct: 76 KFEPIVTQQEGRN 88

>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1 Length = 103

 Score =  125 bits (316), Expect = 2e-38
 Identities = 27/73 (36%), Positives = 41/73 (56%)

Query: 1  MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSC 60
            R K +M+ I+N   R  TFSKR+ G++KKA+ELS L   +V L++ S  G +Y F++ 
Sbjct: 9  RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATR 68

Query: 61 SINKTIERYQKKT 73
           +   I     K 
Sbjct: 69 KLQPMITSETGKA 81

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	160
3p57_A	90	Myocyte-specific enhancer factor 2A; protein-DNA c	100.0
1egw_A	77	MADS box transcription enhancer factor 2, polypept	100.0
1mnm_A	100	Protein (MCM1 transcriptional regulator); transcri	100.0
1hbx_A	92	SRF, serum response factor; gene regulation, trans	100.0
1k6o_B	103	SRF, serum response factor; protein/DNA complex, t	100.0

>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A

Probab=100.00  E-value=2.5e-41  Score=218.74  Aligned_cols=78  Identities=45%  Similarity=0.745  Sum_probs=74.8

Q ss_pred             CccccceeeecCCCCccccccccccchhhhhhhhhcccCcceeeeeecCCCCcccccccchhhHHHHhhhcccccccC
Q 031392            2 VRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERYQKKTKDIGIN   79 (160)
Q Consensus         2 ~R~ki~i~~I~~~~~R~~tf~kR~~gl~KKa~ELs~LC~~~v~~iv~s~~gk~~~~~s~~~~~il~RY~~~~~~~~~~   79 (160)
                      ||+||+|++|+|+++|+|||+|||+||||||+||||||||+||||||||+|++|+|+||+++.||+||...+++....
T Consensus         1 GR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valiifs~~gk~~~f~s~~~~~il~rY~~~~~~~~~~   78 (90)
T 3p57_A            1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEPHESR   78 (90)
T ss_dssp             CCSCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEESSCHHHHHHHHHHCCSCCCEE
T ss_pred             CCCcceeEEecCchHHHHHHHHhhhhHHHHHHHHHhccCCceEEEEECCCCCEEEeCCCCHHHHHHHHHhcCcccccC
Confidence            899999999999999999999999999999999999999999999999999999999999999999999988766543

>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*

Probab=100.00  E-value=3.2e-41  Score=213.35  Aligned_cols=74  Identities=47%  Similarity=0.805  Sum_probs=70.2

Q ss_pred             CccccceeeecCCCCccccccccccchhhhhhhhhcccCcceeeeeecCCCCcccccccchhhHHHHhhhcccc
Q 031392            2 VRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERYQKKTKD   75 (160)
Q Consensus         2 ~R~ki~i~~I~~~~~R~~tf~kR~~gl~KKa~ELs~LC~~~v~~iv~s~~gk~~~~~s~~~~~il~RY~~~~~~   75 (160)
                      ||+||+|++|+|+++|+|||+|||+||||||+||||||||+||||||||+|++|+|+||+++.||+||...+++
T Consensus         1 GR~Ki~ik~I~n~~~R~vTfsKRr~GL~KKA~ELsvLCdaeV~livfs~~gk~~~~~s~~~~~il~ry~~~~~~   74 (77)
T 1egw_A            1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEP   74 (77)
T ss_dssp             CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESSCHHHHHHHHHHC---
T ss_pred             CCceeeeEEecCchHHHHHHHHhHHHHHHHHHHHhcccCCeEEEEEECCCCCEeeCCCCCHHHHHHHHHhccCC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999987654

>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1

Probab=100.00  E-value=4.6e-39  Score=211.51  Aligned_cols=72  Identities=43%  Similarity=0.660  Sum_probs=70.0

Q ss_pred             CCccccceeeecCCCCccccccccccchhhhhhhhhcccCcceeeeeecCCCCcccccccchhhHHHHhhhc
Q 031392            1 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERYQKK   72 (160)
Q Consensus         1 M~R~ki~i~~I~~~~~R~~tf~kR~~gl~KKa~ELs~LC~~~v~~iv~s~~gk~~~~~s~~~~~il~RY~~~   72 (160)
                      |||+||+|++|+|+++|+|||+|||+||||||+||||||||+||||||||+|++|+|+||++..|+++|...
T Consensus        16 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~sps~~~il~r~~G~   87 (100)
T 1mnm_A           16 KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPKFEPIVTQQEGR   87 (100)
T ss_dssp             CCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECTTTTHHHHSHHHH
T ss_pred             CCccceeeEEecCcchhhhhhhHhhhhHHHHHHHHHHhcCCcEEEEEecCCCCcceecCCCHHHHHHHhhCC
Confidence            899999999999999999999999999999999999999999999999999999999999999999999653

>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*

Probab=100.00  E-value=5.2e-39  Score=208.72  Aligned_cols=71  Identities=37%  Similarity=0.549  Sum_probs=68.9

Q ss_pred             CCccccceeeecCCCCccccccccccchhhhhhhhhcccCcceeeeeecCCCCcccccccchhhHHHHhhh
Q 031392            1 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERYQK   71 (160)
Q Consensus         1 M~R~ki~i~~I~~~~~R~~tf~kR~~gl~KKa~ELs~LC~~~v~~iv~s~~gk~~~~~s~~~~~il~RY~~   71 (160)
                      |||+||+|++|+|+++|+|||+|||+||||||+||||||||+||||||||+|++|+|+||++..+|++|..
T Consensus        10 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~V~livfs~~gk~~~f~s~~~~~~i~~~~G   80 (92)
T 1hbx_A           10 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSETG   80 (92)
T ss_dssp             CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTSCEEEEECGGGGGGTSSHHH
T ss_pred             CCcceEEEEEecChhHHHHHHHHhhhhHHHHHHHHHhhcCCceEEEEECCCCCEEEecCCCHHHHHhhhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999997743

>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1

Probab=100.00  E-value=3e-38  Score=208.94  Aligned_cols=69  Identities=38%  Similarity=0.570  Sum_probs=67.8

Q ss_pred             CCccccceeeecCCCCccccccccccchhhhhhhhhcccCcceeeeeecCCCCcccccccchhhHHHHh
Q 031392            1 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERY   69 (160)
Q Consensus         1 M~R~ki~i~~I~~~~~R~~tf~kR~~gl~KKa~ELs~LC~~~v~~iv~s~~gk~~~~~s~~~~~il~RY   69 (160)
                      |||+||+|++|+|+++|+|||+|||+||||||+||||||||+||||||||+|++|+|+||++..||+++
T Consensus         9 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~s~~~~~vi~~~   77 (103)
T 1k6o_B            9 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSE   77 (103)
T ss_dssp             CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSCEEEEECGGGGGGTSSH
T ss_pred             CCcceeEEEEecCchHHHHhHhHhhHhHHHHHHHHHhhhCCceEEEEEeCCCCeeeecCccHHHHHHhh
Confidence            999999999999999999999999999999999999999999999999999999999999999999974

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	160
d1egwa_	71	d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {	4e-34
d1srsa_	84	d.88.1.1 (A:) Serum response factor (SRF) core {Hu	6e-33
d1mnma_	85	d.88.1.1 (A:) MCM1 transcriptional regulator {Bake	7e-33

>d1egwa_ d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Myocyte enhancer factor Mef2a core
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  112 bits (282), Expect = 4e-34
 Identities = 35/69 (50%), Positives = 53/69 (76%)

Query: 3  RGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSI 62
          R K Q+ RI +  +RQVTF+KR+ GL+KKA+ELSVLCD E+ALIIF+   KL++++S  +
Sbjct: 2  RKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDM 61

Query: 63 NKTIERYQK 71
          +K + +Y +
Sbjct: 62 DKVLLKYTE 70

>d1srsa_ d.88.1.1 (A:) Serum response factor (SRF) core {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Serum response factor (SRF) core
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (275), Expect = 6e-33
 Identities = 27/70 (38%), Positives = 41/70 (58%)

Query: 3  RGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSI 62
          R K +M+ I+N   R  TFSKR+ G++KKA+ELS L   +V L++ S  G +Y F++  +
Sbjct: 4  RVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKL 63

Query: 63 NKTIERYQKK 72
             I     K
Sbjct: 64 QPMITSETGK 73

>d1mnma_ d.88.1.1 (A:) MCM1 transcriptional regulator {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 85

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: MCM1 transcriptional regulator
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  109 bits (275), Expect = 7e-33
 Identities = 31/70 (44%), Positives = 46/70 (65%)

Query: 3  RGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSI 62
          R K ++K IEN T R VTFSKR++G++KKAFELSVL   +V L++ S  G +Y FS+   
Sbjct: 4  RRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPKF 63

Query: 63 NKTIERYQKK 72
             + + + +
Sbjct: 64 EPIVTQQEGR 73

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	160
d1egwa_	71	Myocyte enhancer factor Mef2a core {Human (Homo sa	100.0
d1srsa_	84	Serum response factor (SRF) core {Human (Homo sapi	100.0
d1mnma_	85	MCM1 transcriptional regulator {Baker's yeast (Sac	100.0

>d1egwa_ d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Myocyte enhancer factor Mef2a core
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.8e-41  Score=207.99  Aligned_cols=70  Identities=50%  Similarity=0.856  Sum_probs=69.0

Q ss_pred             CccccceeeecCCCCccccccccccchhhhhhhhhcccCcceeeeeecCCCCcccccccchhhHHHHhhh
Q 031392            2 VRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERYQK   71 (160)
Q Consensus         2 ~R~ki~i~~I~~~~~R~~tf~kR~~gl~KKa~ELs~LC~~~v~~iv~s~~gk~~~~~s~~~~~il~RY~~   71 (160)
                      ||+||+|++|+|+..|+|||+|||+||||||+|||+||||+||+|||||+|++|+|+||++++|++||.+
T Consensus         1 GR~Ki~ik~Ie~~~~R~vTFsKRk~GL~KKa~ELs~LC~~~valiv~s~~gk~~~f~s~~~~~vl~ry~~   70 (71)
T d1egwa_           1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTE   70 (71)
T ss_dssp             CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESSCHHHHHHHHHH
T ss_pred             CCccceEEeccCCchheeehhHhhhhHHHHHHHHhhccCCcEEEEEEcCCCCEEEeeCCCHHHHHHHHhc
Confidence            8999999999999999999999999999999999999999999999999999999999999999999976

>d1srsa_ d.88.1.1 (A:) Serum response factor (SRF) core {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Serum response factor (SRF) core
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.3e-39  Score=203.16  Aligned_cols=71  Identities=37%  Similarity=0.549  Sum_probs=69.5

Q ss_pred             CCccccceeeecCCCCccccccccccchhhhhhhhhcccCcceeeeeecCCCCcccccccchhhHHHHhhh
Q 031392            1 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERYQK   71 (160)
Q Consensus         1 M~R~ki~i~~I~~~~~R~~tf~kR~~gl~KKa~ELs~LC~~~v~~iv~s~~gk~~~~~s~~~~~il~RY~~   71 (160)
                      +||+||+|++|+|+..|+|||+|||.||||||+|||+||||+||+|||||+|++|+|+||+++.|+++|..
T Consensus         2 ~GR~Ki~i~~Ie~~~~R~vTFsKRr~GL~KKa~ELs~Lc~~~v~liv~s~~gk~~~f~s~~~~~vi~~~~~   72 (84)
T d1srsa_           2 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSETG   72 (84)
T ss_dssp             CCCCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTCCEEEEECGGGHHHHSSHHH
T ss_pred             CCCceeeEEeecCcchhhhhhHHhhhhHHHHHHHHhcccCCcEEEEEEcCCCCEEEeeCCCHHHHHHHHHH
Confidence            69999999999999999999999999999999999999999999999999999999999999999999975

>d1mnma_ d.88.1.1 (A:) MCM1 transcriptional regulator {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: MCM1 transcriptional regulator
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.2e-38  Score=202.80  Aligned_cols=73  Identities=42%  Similarity=0.651  Sum_probs=70.5

Q ss_pred             CccccceeeecCCCCccccccccccchhhhhhhhhcccCcceeeeeecCCCCcccccccchhhHHHHhhhccc
Q 031392            2 VRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERYQKKTK   74 (160)
Q Consensus         2 ~R~ki~i~~I~~~~~R~~tf~kR~~gl~KKa~ELs~LC~~~v~~iv~s~~gk~~~~~s~~~~~il~RY~~~~~   74 (160)
                      ||+||+|++|+|+.+|+|||+|||.||||||+|||+||||+||||||||+|++|+|+||+++.|++||...+.
T Consensus         3 ~R~Ki~i~~I~~~~~R~vTFsKRr~GL~KKa~ELsvLc~a~vaviv~s~~gk~~~f~sp~v~~vl~r~~~~~~   75 (85)
T d1mnma_           3 ERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPKFEPIVTQQEGRNL   75 (85)
T ss_dssp             CCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECTTTTHHHHSHHHHHH
T ss_pred             CccceEEEEecCCchhhhhhHHHHhhHHHHHHHHhccCCCcEEEEEEcCCCCEEeccCCCHHHHHHHHhcccH
Confidence            8999999999999999999999999999999999999999999999999999999999999999999987543