Citrus Sinensis ID: 031401

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160
Protein Sequence
MASTSFQNVSHGEYDAFLSFRGEDTRKRFIGHLYTALNNKGIYVFRDDKQLEKGGSISPNLLKTIEESRISIIVLSKNYASSTWCLDELLKIVECKNREDQIFPIFYEVEPTVVRKQTASFGEAFAKYEEFFRDNIEKVQKWRYALKVVANISGWELKDR
Secondary Structure (PSIPRED)
cccccccccccccccEEEcccccccccccHHHHHHHHHHccccEEEccccccccccccHHHHHHHHHccEEEEEEcccccccHHHHHHHHHHHHHHccccEEEEEEEcccccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccEEEEEEEccccHHHcHHHHHHHHHHHccccEEEccHHccccccccHHHHHHHHHccEEEEEEcccccccHHHHHHHHHHHHHHHcccEEEEEEEEccHHHHHHccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
mastsfqnvshgeydaflsfrgedtRKRFIGHLYTALNNkgiyvfrddkqlekggsispnLLKTIEESRISIIVLSKNYASSTWCLDELLKIVecknredqifpifyeveptvvRKQTASFGEAFAKYEEFFRDNIEKVQKWRYALKVVANIsgwelkdr
Flexible Loop (DISEMBL)
mastsfqnvshgeyDAFLSFRGEDTRKRFIGHLYTALNNKGIYVFRDDkqlekggsispnllktiEESRISIIVLSKNYASSTWCLDELLKIVECKNREDQIFpifyeveptvVRKQTASFGEAFAKYEEFFRDNIEKVQKWRYALKVvanisgwelkdr
Low Complexity Region (SEG)
MASTSFQNVSHGEYDAFLSFRGEDTRKRFIGHLYTALNNKGIYVFRDDKQLEKGGSISPNLLKTIEESRISIIVLSKNYASSTWCLDELLKIVECKNREDQIFPIFYEVEPTVVRKQTASFGEAFAKYEEFFRDNIEKVQKWRYALKVVANISGWELKDR
Disordered region (IsUnstruct)
************EYDAFLSFRGEDTRKRFIGHLYTALNNKGIYVFRDDKQLEKGGSISPNLLKTIEESRISIIVLSKNYASSTWCLDELLKIVECKNREDQIFPIFYEVEPTVVRKQTASFGEAFAKYEEFFRDNIEKVQKWRYALKVVANISGWE****
Disordered Region (DISOPRED)
************EYDAFLSFRGEDTRKRFIGHLYTALNNKGIYVFRDDKQLEKGGSISPNLLKTIEESRISIIVLSKNYASSTWCLDELLKIVECKNREDQIFPIFYEVEPTVVRKQTASFGEAFAKYEEF*****EKVQKWRYALKVVANISGWELKD*
Disordered Region (DISEMBL)
*********SHGEYDAFLSFRGEDTRKRFIGHLYTALNNKGIYVFRDDKQLEKGGSISPNLLKTIEESRISIIVLSKNYASSTWCLDELLKIVECKNREDQIFPIFYEVEPTVVRKQTASFGEAFAKYEEFFRDNIEKVQKWRYALKVVANISGWELKDR
Disordered Region (DISPRO)
**********HGEYDAFLSFRGEDTRKRFIGHLYTALNNKGIYVFRDDKQLEKGGSISPNLLKTIEESRISIIVLSKNYASSTWCLDELLKIVECKNREDQIFPIFYEVEPTVVRKQTASFGEAFAKYEEFFRDNIEKVQKWRYALKVVANISGW*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASTSFQNVSHGEYDAFLSFRGEDTRKRFIGHLYTALNNKGIYVFRDDKQLEKGGSISPNLLKTIEESRISIIVLSKNYASSTWCLDELLKIVECKNREDQIFPIFYEVEPTVVRKQTASFGEAFAKYEEFFRDNIEKVQKWRYALKVVANISGWELKDR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	160	2.2.26 [Sep-21-2011]
Q40392	1144	TMV resistance protein N	N/A	no	0.881	0.123	0.556	4e-42
O82500	1095	Putative disease resistan	no	no	0.925	0.135	0.438	2e-29
O23530	1301	Protein SUPPRESSOR OF npr	no	no	0.875	0.107	0.469	7e-29
Q9FHE9	354	Protein PHLOEM PROTEIN 2-	no	no	0.987	0.446	0.341	2e-22
Q9SYC9	571	Vesicle-associated protei	no	no	0.912	0.255	0.339	2e-19
Q9FHE8	392	Protein PHLOEM PROTEIN 2-	no	no	0.962	0.392	0.355	1e-18
Q9C5Q9	411	Protein PHLOEM PROTEIN 2-	no	no	0.843	0.328	0.369	2e-17
Q9SZ67	1895	Probable WRKY transcripti	no	no	0.787	0.066	0.281	8e-08
Q9FL92	1372	Probable WRKY transcripti	no	no	0.5	0.058	0.318	7e-06
Q9FHE5	332	Uncharacterized protein P	no	no	0.506	0.243	0.355	0.0003

>sp|Q40392|TMVRN_NICGU TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1

 Score =  170 bits (430), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 79/142 (55%), Positives = 105/142 (73%), Gaps = 1/142 (0%)

Query: 14  YDAFLSFRGEDTRKRFIGHLYTALNNKGIYVFRDDKQLEKGGSISPNLLKTIEESRISII 73
           YD FLSFRGEDTRK F  HLY  LN+KGI  F+DDK+LE G +I   L K IEES+ +I+
Sbjct: 12  YDVFLSFRGEDTRKTFTSHLYEVLNDKGIKTFQDDKRLEYGATIPGELCKAIEESQFAIV 71

Query: 74  VLSKNYASSTWCLDELLKIVECKNREDQ-IFPIFYEVEPTVVRKQTASFGEAFAKYEEFF 132
           V S+NYA+S WCL+EL+KI+ECK R  Q + PIFY+V+P+ VR Q  SF +AF ++E  +
Sbjct: 72  VFSENYATSRWCLNELVKIMECKTRFKQTVIPIFYDVDPSHVRNQKESFAKAFEEHETKY 131

Query: 133 RDNIEKVQKWRYALKVVANISG 154
           +D++E +Q+WR AL   AN+ G
Sbjct: 132 KDDVEGIQRWRIALNEAANLKG 153

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.
Nicotiana glutinosa (taxid: 35889)

>sp|O82500|Y4117_ARATH Putative disease resistance protein At4g11170 OS=Arabidopsis thaliana GN=At4g11170 PE=2 SV=1

 Score =  128 bits (321), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 68/155 (43%), Positives = 96/155 (61%), Gaps = 7/155 (4%)

Query: 1   MASTSFQNVSHGEYDAFLSFRGEDTRKRFIGHLYTALNNKGIYVFRDDKQLEKGGSISPN 60
           MAS+S  +     YD F SFRGED R  F+ HL     +KGI  FRDD  +++  +I   
Sbjct: 1   MASSSSNS---WRYDVFPSFRGEDVRNNFLSHLLKEFESKGIVTFRDD-HIKRSHTIGHE 56

Query: 61  LLKTIEESRISIIVLSKNYASSTWCLDELLKIVECKNRED-QIFPIFYEVEPTVVRKQTA 119
           L   I ES+IS+++ S+NYASS+WCLDEL++I++CK  +  ++ P+FY+V+P+ +RKQT 
Sbjct: 57  LRAAIRESKISVVLFSENYASSSWCLDELIEIMKCKEEQGLKVMPVFYKVDPSDIRKQTG 116

Query: 120 SFGEAFAKYEEFFRDNIEKVQKWRYALKVVANISG 154
            FG +F   E       E+   WR AL   ANI G
Sbjct: 117 KFGMSF--LETCCGKTEERQHNWRRALTDAANILG 149

Arabidopsis thaliana (taxid: 3702)

>sp|O23530|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3

 Score =  126 bits (316), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 69/147 (46%), Positives = 95/147 (64%), Gaps = 7/147 (4%)

Query: 14  YDAFLSFRGEDTRKRFIGHLYTALNNKGIYVFRDDKQLEKGGSISPNLLKTIEESRISII 73
           YD F SFRGED R  F+ HL   L  K I  F DD ++E+  SI P LL  I+ESRI+I+
Sbjct: 12  YDVFPSFRGEDVRDSFLSHLLKELRGKAI-TFIDD-EIERSRSIGPELLSAIKESRIAIV 69

Query: 74  VLSKNYASSTWCLDELLKIVEC-KNREDQIFPIFYEVEPTVVRKQTASFGEAFAKYEEFF 132
           + SKNYASSTWCL+EL++I +C  N    + PIF+ V+ + V+KQT  FG+ F   EE  
Sbjct: 70  IFSKNYASSTWCLNELVEIHKCYTNLNQMVIPIFFHVDASEVKKQTGEFGKVF---EETC 126

Query: 133 RDNIE-KVQKWRYALKVVANISGWELK 158
           +   E + Q W+ AL  VA ++G++L+
Sbjct: 127 KAKSEDEKQSWKQALAAVAVMAGYDLR 153

Disease resistance protein of the TIR-NB-LRR-type. Part of the RPP5 locus that contains a cluster of several paralogous disease resistance (R) genes. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Regulated by RNA silencing. Expression regulated by MOS1 at chromatin level. Negatively regulated at the transcript level by BON1.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FHE9|P2A08_ARATH Protein PHLOEM PROTEIN 2-LIKE A8 OS=Arabidopsis thaliana GN=PP2A8 PE=2 SV=1

 Score =  104 bits (260), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 55/161 (34%), Positives = 93/161 (57%), Gaps = 3/161 (1%)

Query: 1   MASTSFQNVSHGEYDAFLSFRGEDTRKRFIGHLYTALNNKGIYVFRDDKQLEKGGSISPN 60
           MA++S    +      F++FRG+D R  F+  L  A+    I VF D  ++   G+   N
Sbjct: 1   MAASSSVRPTPTGPQVFINFRGKDLRNGFLSFLEPAMREANINVFIDKDEVV--GTDLVN 58

Query: 61  LLKTIEESRISIIVLSKNYASSTWCLDELLKIVECKNRED-QIFPIFYEVEPTVVRKQTA 119
           L   I+ESR+++++ SK+Y SS WCLDEL +I +C N+      PIFY++ P+ V +   
Sbjct: 59  LFVRIQESRVAVVIFSKDYTSSEWCLDELAEIKDCINQGGLNAIPIFYKLAPSSVLELKG 118

Query: 120 SFGEAFAKYEEFFRDNIEKVQKWRYALKVVANISGWELKDR 160
            FG+ F   +E ++++ E+ QKW+ AL+ +  + G  L ++
Sbjct: 119 GFGDTFRVLKEKYKNDPERTQKWQEALESIPKLKGLRLAEK 159

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SYC9|VAP14_ARATH Vesicle-associated protein 1-4 OS=Arabidopsis thaliana GN=PVA14 PE=2 SV=1

 Score = 94.7 bits (234), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 53/156 (33%), Positives = 92/156 (58%), Gaps = 10/156 (6%)

Query: 2   ASTSFQNVSHGEYDAFLSFRGEDTRKRFIGHLYTALNNKGIYVFRDDKQLEKGGSISPNL 61
           +ST    ++  +Y  F++FRG++ R  F+G L  A+  + I VF D+ +L +G +++  L
Sbjct: 346 SSTDDHGITLPQYQVFINFRGDELRNSFVGFLVKAMRLEKINVFTDEVEL-RGTNLN-YL 403

Query: 62  LKTIEESRISIIVLSKNYASSTWCLDELLKIVECKNREDQ----IFPIFYEVEPTVVRKQ 117
            + IEESR+++ + S+ Y  S WCLDEL+K+   K + +Q    + P+FY +  T  ++ 
Sbjct: 404 FRRIEESRVAVAIFSERYTESCWCLDELVKM---KEQMEQGKLVVVPVFYRLNATACKRF 460

Query: 118 TASFGEAFAKYEEFFRDNIEKVQKWRYAL-KVVANI 152
             +FG+     E  +R   E++QKW+ AL  V +NI
Sbjct: 461 MGAFGDNLRNLEWEYRSEPERIQKWKEALSSVFSNI 496

May play a role in vesicle trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FHE8|P2A06_ARATH Protein PHLOEM PROTEIN 2-LIKE A6 OS=Arabidopsis thaliana GN=PP2A6 PE=2 SV=1

 Score = 92.4 bits (228), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 58/163 (35%), Positives = 85/163 (52%), Gaps = 9/163 (5%)

Query: 2   ASTSFQNVSHGEYDAFLSFRGEDTRKRFIGHLYTALNNKGIYVFRDDKQLEKGGSISPNL 61
           +S+S    +      F+ FRG D RK FI  L  AL    I VF D+ +    GS   NL
Sbjct: 3   SSSSVVKPTPTGPQVFICFRGADVRKHFISFLVPALREANINVFIDENEFL--GSEMANL 60

Query: 62  LKTIEESRISIIVLSKNYASSTWCLDELLKIVECKNREDQ----IFPIFYEVEPTVVRKQ 117
           L  IEES +++++ S ++  S  CL+EL KI   K R+DQ    + PIFY+V+P+ V+  
Sbjct: 61  LTRIEESELALVIFSVDFTRSHRCLNELAKI---KERKDQGRLIVIPIFYKVKPSAVKFL 117

Query: 118 TASFGEAFAKYEEFFRDNIEKVQKWRYALKVVANISGWELKDR 160
              FG+ F   E   R  +   QKW+ AL+ +    G  L ++
Sbjct: 118 EGKFGDNFRALERNNRHMLPITQKWKEALESIPGSIGMPLAEQ 160

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C5Q9|P2A05_ARATH Protein PHLOEM PROTEIN 2-LIKE A5 OS=Arabidopsis thaliana GN=PP2A5 PE=2 SV=1

 Score = 88.6 bits (218), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/138 (36%), Positives = 80/138 (57%), Gaps = 3/138 (2%)

Query: 16  AFLSFRGEDTRKRFIGHLYTALNNKGIYVFRDDKQLEKGGSISPNLLKTIEESRISIIVL 75
            F++FRG+D RK F+  L  AL  + I VF D++  E+ G    +L  TI ES+I++++ 
Sbjct: 24  VFINFRGKDLRKGFMSFLKPALKKEKINVFIDEQ--EERGKYLISLFDTIGESKIALVIF 81

Query: 76  SKNYASSTWCLDELLKIVECKNREDQ-IFPIFYEVEPTVVRKQTASFGEAFAKYEEFFRD 134
           S+ Y  S WC+DEL+KI E  ++    I PIFY ++  VV+  T  FG+ F    + ++ 
Sbjct: 82  SEGYCESHWCMDELVKIKEYMDQNRLIIIPIFYRLDLDVVKDLTGKFGDNFWDLVDKYQP 141

Query: 135 NIEKVQKWRYALKVVANI 152
             +K+ KW  AL  V  +
Sbjct: 142 EPKKLHKWTEALFSVCEL 159

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SZ67|WRK19_ARATH Probable WRKY transcription factor 19 OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1

 Score = 56.2 bits (134), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 73/153 (47%), Gaps = 27/153 (17%)

Query: 10  SHGEYDAFLSF-RGEDTRKRFIGHLYTALNNKGIYVFRDDKQLEKGGSISPNLLKTIEES 68
           S  +YD  + + R + + + FI HL  +L  +GI V+    +++            + + 
Sbjct: 664 SSKDYDVVIRYGRADISNEDFISHLRASLCRRGISVYEKFNEVD-----------ALPKC 712

Query: 69  RISIIVLSKNYASSTWCLDELLKIVECKNREDQI-FPIFYEVEPTVVRKQTASFGEAFAK 127
           R+ IIVL+  Y  S      LL I+E ++ ED++ +PIFY + P         F      
Sbjct: 713 RVLIIVLTSTYVPSN-----LLNILEHQHTEDRVVYPIFYRLSP-------YDFVCNSKN 760

Query: 128 YEEFFRDNIEKVQKWRYALKVVANISGWELKDR 160
           YE F+  +  K  KW+ ALK +  + G+ L D+
Sbjct: 761 YERFYLQDEPK--KWQAALKEITQMPGYTLTDK 791

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May act also as a disease resistance protein with a serine/threonine-protein kinase activity.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL92|WRK16_ARATH Probable WRKY transcription factor 16 OS=Arabidopsis thaliana GN=WRKY16 PE=2 SV=1

 Score = 49.7 bits (117), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 50/88 (56%), Gaps = 8/88 (9%)

Query: 23  EDTRKRFIGHLYTALNNKGIYVFRDDKQLEKGGSISPNLLKTIEESRISIIVLSKNYASS 82
           E+ R  F+ HL  AL  KG+    +D  ++   S+S      +E +R+S+++L  N   S
Sbjct: 14  EEVRYSFVSHLSKALQRKGV----NDVFIDSDDSLSNESQSMVERARVSVMILPGNRTVS 69

Query: 83  TWCLDELLKIVECKNREDQ-IFPIFYEV 109
              LD+L+K+++C+  +DQ + P+ Y V
Sbjct: 70  ---LDKLVKVLDCQKNKDQVVVPVLYGV 94

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May also act as a disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FHE5|P2A07_ARATH Uncharacterized protein PHLOEM PROTEIN 2-LIKE A7 OS=Arabidopsis thaliana GN=PP2A7 PE=4 SV=1

 Score = 44.7 bits (104), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 9/90 (10%)

Query: 23  EDTRKRFIGHLYTALNNKGIYVFRDDKQLEKGGSISPNLLKTIEESRISIIVLSKNYASS 82
           ED  K  I  L   L NK I VF D++++   G    NL K I++S+IS+ + S++    
Sbjct: 51  EDVSKGLINFLEPVLQNKNINVFIDEEEVRGKG--LKNLFKRIQDSKISLAIFSESKCD- 107

Query: 83  TWCLDELLKIVECKNREDQIFPIFYEVEPT 112
               ++LLK  E     D+  PIFY+V+ T
Sbjct: 108 ---FNDLLKNNESA---DEAIPIFYKVDAT 131

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	160
105922482	1121	TIR-NBS-LRR type disease resistance prot	1.0	0.142	0.571	9e-50
224130518	1121	tir-nbs-lrr resistance protein [Populus	1.0	0.142	0.571	1e-49
224127726	1203	tir-nbs-lrr resistance protein [Populus	0.962	0.128	0.612	9e-49
224144414	520	tir-nbs-lrr resistance protein [Populus	0.912	0.280	0.612	7e-47
37781280	1136	nematode resistance-like protein [Solanu	0.9	0.126	0.619	2e-46
37781356	1136	nematode resistance-like protein [Solanu	0.9	0.126	0.619	3e-46
37781226	1136	nematode resistance protein [Solanum tub	0.9	0.126	0.619	4e-46
224145716	532	tir-nbs-lrr resistance protein [Populus	0.912	0.274	0.605	4e-46
224123354	522	tir-nbs-lrr resistance protein [Populus	0.906	0.277	0.595	6e-45
147802475	1244	hypothetical protein VITISV_027841 [Viti	0.987	0.127	0.558	6e-45

>gi|105922482|gb|ABF81419.1| TIR-NBS-LRR type disease resistance protein [Populus trichocarpa]

 Score =  201 bits (511), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 92/161 (57%), Positives = 124/161 (77%), Gaps = 1/161 (0%)

Query: 1   MASTSFQNVSHGEYDAFLSFRGEDTRKRFIGHLYTALNNKGIYVFRDDKQLEKGGSISPN 60
           MA++  +  +  +YD FLSFRGEDTRK F  HLYTAL ++G+  FRDD++LE+G  IS  
Sbjct: 1   MAASYSRTTTRWKYDVFLSFRGEDTRKSFTDHLYTALCHRGVITFRDDQELERGNEISRE 60

Query: 61  LLKTIEESRISIIVLSKNYASSTWCLDELLKIVECKNREDQ-IFPIFYEVEPTVVRKQTA 119
           LL+ I++SR S+IV S+NY SSTWCL+EL+KIVEC  +  Q + P+FY+V+P+ VR QT 
Sbjct: 61  LLQAIQDSRFSVIVFSRNYTSSTWCLNELVKIVECMKQGRQTVIPVFYDVDPSEVRNQTG 120

Query: 120 SFGEAFAKYEEFFRDNIEKVQKWRYALKVVANISGWELKDR 160
              +AFA +EE F+DNIEKVQ WR A+K+VAN+SGW+L+DR
Sbjct: 121 RLQQAFADHEEVFKDNIEKVQTWRIAMKLVANLSGWDLQDR 161

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224130518|ref|XP_002328629.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222838611|gb|EEE76976.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  201 bits (510), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 92/161 (57%), Positives = 124/161 (77%), Gaps = 1/161 (0%)

Query: 1   MASTSFQNVSHGEYDAFLSFRGEDTRKRFIGHLYTALNNKGIYVFRDDKQLEKGGSISPN 60
           MA++  +  +  +YD FLSFRGEDTRK F  HLYTAL ++G+  FRDD++LE+G  IS  
Sbjct: 1   MAASYSRTTTRWKYDVFLSFRGEDTRKSFTDHLYTALCHRGVITFRDDQELERGNEISRE 60

Query: 61  LLKTIEESRISIIVLSKNYASSTWCLDELLKIVECKNREDQ-IFPIFYEVEPTVVRKQTA 119
           LL+ I++SR S+IV S+NY SSTWCL+EL+KIVEC  +  Q + P+FY+V+P+ VR QT 
Sbjct: 61  LLQAIQDSRFSVIVFSRNYTSSTWCLNELVKIVECMKQGRQTVIPVFYDVDPSEVRNQTG 120

Query: 120 SFGEAFAKYEEFFRDNIEKVQKWRYALKVVANISGWELKDR 160
              +AFA +EE F+DNIEKVQ WR A+K+VAN+SGW+L+DR
Sbjct: 121 RLQQAFADHEEVFKDNIEKVQTWRIAMKLVANLSGWDLQDR 161

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127726|ref|XP_002329162.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222870943|gb|EEF08074.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  197 bits (502), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 95/155 (61%), Positives = 121/155 (78%), Gaps = 1/155 (0%)

Query: 7   QNVSHGEYDAFLSFRGEDTRKRFIGHLYTALNNKGIYVFRDDKQLEKGGSISPNLLKTIE 66
           QN     Y  FLSFRGEDTRK F GHLY+ L+   + VF+DD++LEKG  I+P LLK IE
Sbjct: 19  QNNCKWTYHVFLSFRGEDTRKNFTGHLYSGLSRFKLLVFKDDEKLEKGKVIAPELLKAIE 78

Query: 67  ESRISIIVLSKNYASSTWCLDELLKIVECKNREDQ-IFPIFYEVEPTVVRKQTASFGEAF 125
           +S  S+IVLSKNYASS+WCLDEL KI+EC +++ Q IFP+FY+VEP+ VRKQT SF + F
Sbjct: 79  QSMFSVIVLSKNYASSSWCLDELAKIIECGDQKGQKIFPVFYDVEPSDVRKQTGSFQDDF 138

Query: 126 AKYEEFFRDNIEKVQKWRYALKVVANISGWELKDR 160
           AK+EE +R+NI+KV+KWR A+  VAN+SGW  K+R
Sbjct: 139 AKHEEKYRENIDKVRKWRAAMTQVANLSGWTSKNR 173

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224144414|ref|XP_002325282.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222862157|gb|EEE99663.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  191 bits (486), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 90/147 (61%), Positives = 111/147 (75%), Gaps = 1/147 (0%)

Query: 14  YDAFLSFRGEDTRKRFIGHLYTALNNKGIYVFRDDKQLEKGGSISPNLLKTIEESRISII 73
           YD FLSFRGEDTRK F  HLYTAL N GI+ FRDD +L +G  ISP LLK IE SRISI+
Sbjct: 1   YDVFLSFRGEDTRKNFTDHLYTALGNAGIHTFRDDNELPRGEEISPQLLKAIEGSRISIV 60

Query: 74  VLSKNYASSTWCLDELLKIVECKNREDQ-IFPIFYEVEPTVVRKQTASFGEAFAKYEEFF 132
           V SK+YASS WCLDEL+KI+EC+ +  Q + PIFY+ EP+ VRKQT S+ +AF ++EE F
Sbjct: 61  VFSKHYASSRWCLDELVKIIECRQKIGQVVLPIFYDTEPSDVRKQTGSYAKAFDEHEERF 120

Query: 133 RDNIEKVQKWRYALKVVANISGWELKD 159
           ++ +EKV KWR AL    N+SGW L +
Sbjct: 121 KEEMEKVNKWRGALAEAGNLSGWGLHN 147

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|37781280|gb|AAP44392.1| nematode resistance-like protein [Solanum tuberosum]

 Score =  189 bits (481), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 91/147 (61%), Positives = 116/147 (78%), Gaps = 3/147 (2%)

Query: 14  YDAFLSFRGEDTRKRFIGHLYTALNNKGIYVFRDDKQLEKGGSISPNLLKTIEESRISII 73
           YD FLSFRGED RK F+ HLY AL  K I  F+DD++LEKG  ISP L+ +IEESRI++I
Sbjct: 18  YDVFLSFRGEDVRKTFVDHLYLALQQKCINTFKDDEKLEKGKFISPELMSSIEESRIALI 77

Query: 74  VLSKNYASSTWCLDELLKIVECKNREDQI-FPIFYEVEPTVVRKQTASFGEAFAKYEEFF 132
           + SKNYA+STWCLDEL KI+ECKN + QI  P+FY+V+P+ VRKQ + FGEAF+K+E  F
Sbjct: 78  IFSKNYANSTWCLDELTKIMECKNVKGQIVVPVFYDVDPSTVRKQKSIFGEAFSKHEARF 137

Query: 133 RDNIEKVQKWRYALKVVANISGWELKD 159
           ++  +KVQKWR AL+  ANISGW+L +
Sbjct: 138 QE--DKVQKWRAALEEAANISGWDLPN 162

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|37781356|gb|AAP44393.1| nematode resistance-like protein [Solanum tuberosum]

 Score =  189 bits (480), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 91/147 (61%), Positives = 116/147 (78%), Gaps = 3/147 (2%)

Query: 14  YDAFLSFRGEDTRKRFIGHLYTALNNKGIYVFRDDKQLEKGGSISPNLLKTIEESRISII 73
           YD FLSFRGED RK F+ HLY AL  K I  F+DD++LEKG  ISP L+ +IEESRI++I
Sbjct: 18  YDVFLSFRGEDVRKTFVDHLYLALQQKCINTFKDDEKLEKGKFISPELVSSIEESRIALI 77

Query: 74  VLSKNYASSTWCLDELLKIVECKNREDQI-FPIFYEVEPTVVRKQTASFGEAFAKYEEFF 132
           + SKNYA+STWCLDEL KI+ECKN + QI  P+FY+V+P+ VRKQ + FGEAF+K+E  F
Sbjct: 78  IFSKNYANSTWCLDELTKIMECKNVKGQIVVPVFYDVDPSTVRKQKSIFGEAFSKHEARF 137

Query: 133 RDNIEKVQKWRYALKVVANISGWELKD 159
           ++  +KVQKWR AL+  ANISGW+L +
Sbjct: 138 QE--DKVQKWRAALEEAANISGWDLPN 162

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|37781226|gb|AAP44390.1| nematode resistance protein [Solanum tuberosum]

 Score =  189 bits (479), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 91/147 (61%), Positives = 116/147 (78%), Gaps = 3/147 (2%)

Query: 14  YDAFLSFRGEDTRKRFIGHLYTALNNKGIYVFRDDKQLEKGGSISPNLLKTIEESRISII 73
           YD FLSFRGED RK F+ HLY AL  K I  F+DD++LEKG  ISP L+ +IEESRI++I
Sbjct: 18  YDVFLSFRGEDVRKTFVDHLYLALEQKCINTFKDDEKLEKGKFISPELVSSIEESRIALI 77

Query: 74  VLSKNYASSTWCLDELLKIVECKNREDQI-FPIFYEVEPTVVRKQTASFGEAFAKYEEFF 132
           + SKNYA+STWCLDEL KI+ECKN + QI  P+FY+V+P+ VRKQ + FGEAF+K+E  F
Sbjct: 78  IFSKNYANSTWCLDELTKIMECKNVKGQIVVPVFYDVDPSTVRKQKSIFGEAFSKHEARF 137

Query: 133 RDNIEKVQKWRYALKVVANISGWELKD 159
           ++  +KVQKWR AL+  ANISGW+L +
Sbjct: 138 QE--DKVQKWRAALEEAANISGWDLPN 162

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145716|ref|XP_002325741.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|224145719|ref|XP_002325742.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222862616|gb|EEF00123.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222862617|gb|EEF00124.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  189 bits (479), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 89/147 (60%), Positives = 110/147 (74%), Gaps = 1/147 (0%)

Query: 14  YDAFLSFRGEDTRKRFIGHLYTALNNKGIYVFRDDKQLEKGGSISPNLLKTIEESRISII 73
           YD FLSFRG+DTRK F  HLYTAL   GI+ FRDD +L +G  ISP L+K IE SRISI+
Sbjct: 10  YDVFLSFRGKDTRKNFTDHLYTALIQAGIHTFRDDNELPRGEEISPQLVKAIEGSRISIV 69

Query: 74  VLSKNYASSTWCLDELLKIVECKNREDQ-IFPIFYEVEPTVVRKQTASFGEAFAKYEEFF 132
           V SK YASS WCLDEL+KIVEC+ + DQ + PIFY+ EP+ VRKQT S+ +AF ++EE F
Sbjct: 70  VFSKQYASSRWCLDELVKIVECRQKIDQVVLPIFYDTEPSDVRKQTGSYAKAFDEHEEHF 129

Query: 133 RDNIEKVQKWRYALKVVANISGWELKD 159
           ++ +EKV KWR AL    N+SGW L +
Sbjct: 130 KEEMEKVNKWRGALAEAGNLSGWGLNN 156

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123354|ref|XP_002319058.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222857434|gb|EEE94981.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  185 bits (469), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 87/146 (59%), Positives = 110/146 (75%), Gaps = 1/146 (0%)

Query: 13  EYDAFLSFRGEDTRKRFIGHLYTALNNKGIYVFRDDKQLEKGGSISPNLLKTIEESRISI 72
            YD FLSFRGEDTRK F  HLYTAL N GI+ FRDD +L KG  IS +LLK I+ES+ISI
Sbjct: 9   HYDVFLSFRGEDTRKNFTDHLYTALQNAGIHTFRDDNELPKGEEISSHLLKAIKESKISI 68

Query: 73  IVLSKNYASSTWCLDELLKIVECKNREDQI-FPIFYEVEPTVVRKQTASFGEAFAKYEEF 131
           +V SK YASSTWCLDEL +I++C+    QI  P+FY+++P+ +RKQT SF EAF ++EE 
Sbjct: 69  VVFSKGYASSTWCLDELSEILDCRQTAGQIVLPVFYDIDPSDIRKQTGSFAEAFDRHEER 128

Query: 132 FRDNIEKVQKWRYALKVVANISGWEL 157
           F++ +EKVQKWR AL     +SG +L
Sbjct: 129 FKEEMEKVQKWRKALVEAGRLSGLDL 154

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147802475|emb|CAN61853.1| hypothetical protein VITISV_027841 [Vitis vinifera]

 Score =  185 bits (469), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 91/163 (55%), Positives = 117/163 (71%), Gaps = 5/163 (3%)

Query: 1   MASTSFQ---NVSHGEYDAFLSFRGEDTRKRFIGHLYTALNNKGIYVFRDDKQLEKGGSI 57
           MAS+      + SH  YD FLSFRGEDTR+ F  HLY AL  KG+  FRDD++LE+G  I
Sbjct: 1   MASSMINQKDSASHWNYDVFLSFRGEDTRRSFTDHLYAALVEKGVRTFRDDEELERGKEI 60

Query: 58  SPNLLKTIEESRISIIVLSKNYASSTWCLDELLKIVECKNREDQ-IFPIFYEVEPTVVRK 116
           +P LLK IEESRIS++V SKNYA S WC+DEL+KI+EC   + Q + P+FY+V+PT VRK
Sbjct: 61  APELLKAIEESRISVVVFSKNYARSGWCMDELVKIIECMKAKGQTVLPVFYDVDPTHVRK 120

Query: 117 QTASFGEAFAKYEEFFRDNIEKVQKWRYALKVVANISGWELKD 159
           QT SF EAFA + E   + IE+ ++WR AL   AN+SGW L++
Sbjct: 121 QTGSFMEAFASHGE-DTEVIERAKRWRAALTQAANLSGWHLQN 162

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	160
UNIPROTKB|Q40392	1144	N "TMV resistance protein N" [	0.95	0.132	0.541	1.6e-39
TAIR|locus:2175991	1294	AT5G17680 [Arabidopsis thalian	0.912	0.112	0.503	4.1e-33
TAIR|locus:2032713	363	AT1G72900 [Arabidopsis thalian	0.875	0.385	0.510	5.2e-33
TAIR|locus:2167457	1191	AT5G36930 [Arabidopsis thalian	0.906	0.121	0.489	1.5e-32
TAIR|locus:2032723	275	AT1G72920 [Arabidopsis thalian	0.881	0.512	0.496	6e-32
TAIR|locus:2032753	371	AT1G72940 [Arabidopsis thalian	0.881	0.380	0.489	1.3e-31
TAIR|locus:2032597	379	AT1G72950 [Arabidopsis thalian	0.906	0.382	0.463	4.2e-31
TAIR|locus:2013875	429	AT1G66090 [Arabidopsis thalian	0.9	0.335	0.472	1.4e-30
TAIR|locus:2032733	176	TIR "toll/interleukin-1 recept	0.875	0.795	0.489	1.4e-30
TAIR|locus:2032718	380	AT1G72910 [Arabidopsis thalian	0.875	0.368	0.489	1.8e-30

UNIPROTKB|Q40392 N "TMV resistance protein N" [Nicotiana glutinosa (taxid:35889)]

 Score = 433 (157.5 bits), Expect = 1.6e-39, P = 1.6e-39
 Identities = 84/155 (54%), Positives = 112/155 (72%)

Query:     1 MASTSFQNVSHGEYDAFLSFRGEDTRKRFIGHLYTALNNKGIYVFRDDKQLEKGGSISPN 60
             MAS+S  + S   YD FLSFRGEDTRK F  HLY  LN+KGI  F+DDK+LE G +I   
Sbjct:     1 MASSS--SSSRWSYDVFLSFRGEDTRKTFTSHLYEVLNDKGIKTFQDDKRLEYGATIPGE 58

Query:    61 LLKTIEESRISIIVLSKNYASSTWCLDELLKIVECKNREDQ-IFPIFYEVEPTVVRKQTA 119
             L K IEES+ +I+V S+NYA+S WCL+EL+KI+ECK R  Q + PIFY+V+P+ VR Q  
Sbjct:    59 LCKAIEESQFAIVVFSENYATSRWCLNELVKIMECKTRFKQTVIPIFYDVDPSHVRNQKE 118

Query:   120 SFGEAFAKYEEFFRDNIEKVQKWRYALKVVANISG 154
             SF +AF ++E  ++D++E +Q+WR AL   AN+ G
Sbjct:   119 SFAKAFEEHETKYKDDVEGIQRWRIALNEAANLKG 153

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2175991 AT5G17680 [Arabidopsis thaliana (taxid:3702)]

 Score = 374 (136.7 bits), Expect = 4.1e-33, P = 4.1e-33
 Identities = 77/153 (50%), Positives = 105/153 (68%)

Query:     2 ASTSFQNVSHGEYDAFLSFRGEDTRKRFIGHLYTALNNKGIYVFRDDKQLEKGGSISPNL 61
             +S+S  + +  + D F+SFRGED RK F+ HL+   +  GI  FRDD  L++G SISP L
Sbjct:     6 SSSSSSSSTVWKTDVFVSFRGEDVRKTFVSHLFCEFDRMGIKAFRDDLDLQRGKSISPEL 65

Query:    62 LKTIEESRISIIVLSKNYASSTWCLDELLKIVECKNREDQIFPIFYEVEPTVVRKQTASF 121
             +  I+ SR +I+V+S+NYA+S+WCLDELLKI+EC   +D I PIFYEV+P+ VR+Q  SF
Sbjct:    66 IDAIKGSRFAIVVVSRNYAASSWCLDELLKIMECN--KDTIVPIFYEVDPSDVRRQRGSF 123

Query:   122 GEAFAKYEEFFRDNIEKVQKWRYALKVVANISG 154
             GE    + +      EKV KW+ ALK +A ISG
Sbjct:   124 GEDVESHSDK-----EKVGKWKEALKKLAAISG 151

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2032713 AT1G72900 [Arabidopsis thaliana (taxid:3702)]

 Score = 360 (131.8 bits), Expect = 5.2e-33, P = 5.2e-33
 Identities = 73/143 (51%), Positives = 98/143 (68%)

Query:    14 YDAFLSFRGEDTRKRFIGHLYTALNNKGIYVFRDDKQLEKGGSISPNLLKTIEESRISII 73
             YD FLSFRG DTR++FI  LY  L  + I  F+DDK+LE G  ISP L+  IE+SR +++
Sbjct:    10 YDVFLSFRGPDTRRKFISFLYKELVGRDIRTFKDDKELENGQMISPELILAIEDSRFAVV 69

Query:    74 VLSKNYASSTWCLDELLKIVEC-KNRED-QIFPIFYEVEPTVVRKQTASFGEAFAKYEEF 131
             V+S NYA+S+WCLDEL+KI++  KN+    + PIFY V P  +R+Q     E F K+E  
Sbjct:    70 VVSVNYAASSWCLDELVKIMDIQKNKGSITVMPIFYGVNPCHLRRQIGDVAEQFKKHEAR 129

Query:   132 FRDNIEKVQKWRYALKVVANISG 154
              +D +EKV KWR AL  +A+ISG
Sbjct:   130 EKD-LEKVLKWRQALAALADISG 151

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009610 "response to symbiotic fungus" evidence=RCA

GO:0009625 "response to insect" evidence=RCA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0051707 "response to other organism" evidence=RCA

TAIR|locus:2167457 AT5G36930 [Arabidopsis thaliana (taxid:3702)]

 Score = 368 (134.6 bits), Expect = 1.5e-32, P = 1.5e-32
 Identities = 73/149 (48%), Positives = 102/149 (68%)

Query:    14 YDAFLSFRGEDTRKRFIGHLYTALNNKGIYVFRDDKQLEKGGSISPNLLKTIEESRISII 73
             YD F+SFRG D RK F+ HLY +L   GI  F DD +L++G  ISP LL  IE S+I I+
Sbjct:    17 YDVFVSFRGADVRKNFLSHLYDSLRRCGISTFMDDVELQRGEYISPELLNAIETSKILIV 76

Query:    74 VLSKNYASSTWCLDELLKIVEC-KNREDQ-IFPIFYEVEPTVVRKQTASFGEAFAKYEEF 131
             VL+K+YASS WCLDEL+ I++  KN     +FPIF  V+P+ +R Q  S+ ++F+K++  
Sbjct:    77 VLTKDYASSAWCLDELVHIMKSHKNNPSHMVFPIFLYVDPSDIRWQQGSYAKSFSKHKN- 135

Query:   132 FRDNIEKVQKWRYALKVVANISGWELKDR 160
                 + K++ WR AL  VANISGW++K+R
Sbjct:   136 -SHPLNKLKDWREALTKVANISGWDIKNR 163

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2032723 AT1G72920 [Arabidopsis thaliana (taxid:3702)]

 Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
 Identities = 71/143 (49%), Positives = 96/143 (67%)

Query:    13 EYDAFLSFRGEDTRKRFIGHLYTALNNKGIYVFRDDKQLEKGGSISPNLLKTIEESRISI 72
             +YD FLSFRG DTR+ FI  LY  L  + I  F+DDK+LE G  ISP L + IEES+ ++
Sbjct:     8 KYDVFLSFRGLDTRRNFISFLYKELVRRKIRTFKDDKELENGRRISPELKRAIEESKFAV 67

Query:    73 IVLSKNYASSTWCLDELLKIVECKNRED-QIFPIFYEVEPTVVRKQTASFGEAFAKYEEF 131
             +V+S NYA+S WCLDEL+KI++ +N+    + PIFY V+P  +R+Q     E F K+E  
Sbjct:    68 VVVSVNYAASPWCLDELVKIMDFENKGSITVMPIFYGVDPCHLRRQIGDVAEQFKKHEAR 127

Query:   132 FRDNIEKVQKWRYALKVVANISG 154
               D+ EKV  WR AL  +A+ISG
Sbjct:   128 EEDH-EKVASWRRALTSLASISG 149

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0009611 "response to wounding" evidence=IEP

TAIR|locus:2032753 AT1G72940 [Arabidopsis thaliana (taxid:3702)]

 Score = 347 (127.2 bits), Expect = 1.3e-31, P = 1.3e-31
 Identities = 70/143 (48%), Positives = 95/143 (66%)

Query:    13 EYDAFLSFRGEDTRKRFIGHLYTALNNKGIYVFRDDKQLEKGGSISPNLLKTIEESRISI 72
             +YD FLSFRG DTR+ FI  LY     + I  F+DDK+LE G  ISP L + IEES+ ++
Sbjct:     8 KYDVFLSFRGVDTRRNFISFLYKEFVRRKIRTFKDDKELENGRRISPELKRAIEESKFAV 67

Query:    73 IVLSKNYASSTWCLDELLKIVECKNRED-QIFPIFYEVEPTVVRKQTASFGEAFAKYEEF 131
             +V+S NYA+S WCLDEL+KI++ +N+    + PIFY V+P  +R+Q     E F K+E  
Sbjct:    68 VVVSVNYAASPWCLDELVKIMDFENKGSITVMPIFYGVDPCHLRRQIGDVAEQFKKHEAR 127

Query:   132 FRDNIEKVQKWRYALKVVANISG 154
               D+ EKV  WR AL  +A+ISG
Sbjct:   128 EEDH-EKVASWRRALTSLASISG 149

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0006914 "autophagy" evidence=RCA

TAIR|locus:2032597 AT1G72950 [Arabidopsis thaliana (taxid:3702)]

 Score = 342 (125.4 bits), Expect = 4.2e-31, P = 4.2e-31
 Identities = 70/151 (46%), Positives = 101/151 (66%)

Query:    13 EYDAFLSFRGEDTRKRFIGHLYTALNNKGIYVFRDDKQLEKGGSISPNLLKTIEESRISI 72
             ++D FLSFRG DTR+ FI  LY  L  + I  F+DDK+L+ G  I+P L++ IE SR ++
Sbjct:    10 KFDVFLSFRGLDTRRSFISFLYKELIRRNIRTFKDDKELKNGRRITPELIRAIEGSRFAV 69

Query:    73 IVLSKNYASSTWCLDELLKIVECKNRED-QIFPIFYEVEPTVVRKQTASFGEAFAKYEEF 131
             +V+S NYA+S WCL+EL+KI++ +N    ++ PIFY V+P  VR+Q     E F K+E  
Sbjct:    70 VVVSVNYAASRWCLEELVKIMDFENMGSLKVMPIFYGVDPCHVRRQIGEVAEQFKKHEG- 128

Query:   132 FRDNIEKVQKWRYALKVVANISG---WELKD 159
              R++ EKV  WR AL  +A+ISG   W+ +D
Sbjct:   129 -REDHEKVLSWRQALTNLASISGDCSWKWED 158

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2013875 AT1G66090 [Arabidopsis thaliana (taxid:3702)]

 Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
 Identities = 70/148 (47%), Positives = 95/148 (64%)

Query:    14 YDAFLSFRGEDTRKRFIGHLYTALNNKGIYVFRDDKQLEKGGSISPNLLKTIEESRISII 73
             Y  F SF G D R  F+ HL    N  GI +F DD+++E+  +++P L + I ES+I I+
Sbjct:    26 YMTFTSFHGPDVRNTFLSHLRKQFNTNGITMF-DDQRMERSQTLAPTLTQAIRESKIYIV 84

Query:    74 VLSKNYASSTWCLDELLKIVECKNREDQ-IFPIFYEVEPTVVRKQTASFGEAFAKYEEFF 132
             +LSKNYASS+WCLDELL+I+ CK +  Q +  IFY V P+ VRKQT  FG AF   E   
Sbjct:    85 LLSKNYASSSWCLDELLEILNCKEKRGQRVMTIFYGVNPSDVRKQTGEFGIAFN--ETCA 142

Query:   133 RDNIEKVQKWRYALKVVANISGWELKDR 160
             R   E+ +KW +AL  V NI+G  ++DR
Sbjct:   143 RKTEEERRKWSHALTCVGNITGVHVQDR 170

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2032733 TIR "toll/interleukin-1 receptor-like" [Arabidopsis thaliana (taxid:3702)]

 Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
 Identities = 70/143 (48%), Positives = 91/143 (63%)

Query:    13 EYDAFLSFRGEDTRKRFIGHLYTALNNKGIYVFRDDKQLEKGGSISPNLLKTIEESRISI 72
             +YD FLSFRG DTR  FI  LY  L  + I  F+DDK+LE G   SP L   IE SR ++
Sbjct:     8 KYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAV 67

Query:    73 IVLSKNYASSTWCLDELLKIVECKNRED-QIFPIFYEVEPTVVRKQTASFGEAFAKYEEF 131
             +V+S+NYA+S+WCLDEL+ I++ + +    + PIFY VEP  VR QT    E F K+   
Sbjct:    68 VVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHAS- 126

Query:   132 FRDNIEKVQKWRYALKVVANISG 154
              R++ EKV KWR AL   A +SG
Sbjct:   127 -REDPEKVLKWRQALTNFAQLSG 148

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2032718 AT1G72910 [Arabidopsis thaliana (taxid:3702)]

 Score = 336 (123.3 bits), Expect = 1.8e-30, P = 1.8e-30
 Identities = 70/143 (48%), Positives = 93/143 (65%)

Query:    13 EYDAFLSFRGEDTRKRFIGHLYTALNNKGIYVFRDDKQLEKGGSISPNLLKTIEESRISI 72
             +YD FLSFRG DTR+ FI  LY  L  + I  F+DDK+LE G  IS  L +TIE SR ++
Sbjct:     8 KYDVFLSFRGHDTRQNFISFLYKELVRRSIRTFKDDKELENGQRISSELKRTIEVSRFAV 67

Query:    73 IVLSKNYASSTWCLDELLKIVECKNRED-QIFPIFYEVEPTVVRKQTASFGEAFAKYEEF 131
             +V+S+ YA+S+WCLDEL+ I++ + +    + PIFY VEP  VR QT    E F K+   
Sbjct:    68 VVVSETYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHGS- 126

Query:   132 FRDNIEKVQKWRYALKVVANISG 154
              R++ EKV KWR AL   A +SG
Sbjct:   127 -REDHEKVLKWRQALTNFAQLSG 148

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	160
pfam01582	135	pfam01582, TIR, TIR domain	6e-43
PLN03210	1153	PLN03210, PLN03210, Resistant to P	4e-40
smart00255	140	smart00255, TIR, Toll - interleukin 1 - resistance	2e-39
PLN03194	187	PLN03194, PLN03194, putative disease resistance pr	3e-13
pfam13676	102	pfam13676, TIR_2, TIR domain	3e-09

>gnl|CDD|216585 pfam01582, TIR, TIR domain

 Score =  138 bits (350), Expect = 6e-43
 Identities = 60/135 (44%), Positives = 84/135 (62%), Gaps = 3/135 (2%)

Query: 16  AFLSFRGEDTRKRFIGHLYTALNNKGIYVFRDDKQLEKGGSISPNLLKTIEESRISIIVL 75
            F+SF G+D R  F+ HL   L  KGI +  DD+    G SI  NL + IE+SR +I++ 
Sbjct: 1   VFVSFSGKDDRDTFVSHLLKELEEKGIKLCIDDRDELPGESILENLFEAIEKSRRAIVIF 60

Query: 76  SKNYASSTWCLDELLKIVECKNREDQ---IFPIFYEVEPTVVRKQTASFGEAFAKYEEFF 132
           S NYASS WCLDEL++IV+C         I PIFY+V+P+ VR Q+  FG+AF K  ++ 
Sbjct: 61  SSNYASSEWCLDELVEIVKCALEGGGKKVILPIFYKVDPSDVRPQSGKFGKAFLKTLKWS 120

Query: 133 RDNIEKVQKWRYALK 147
            D  +K++ W+ AL 
Sbjct: 121 GDKEDKIRFWKKALY 135

The Toll/interleukin-1 receptor (TIR) homology domain is an intracellular signalling domain found in MyD88, interleukin 1 receptor and the Toll receptor. It contains three highly-conserved regions, and mediates protein-protein interactions between the Toll-like receptors (TLRs) and signal-transduction components. TIR-like motifs are also found in plant proteins thought to be involved in resistance to disease. When activated, TIR domains recruit cytoplasmic adaptor proteins MyD88 and TOLLIP (Toll interacting protein). In turn, these associate with various kinases to set off signalling cascades. Length = 135

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score =  142 bits (360), Expect = 4e-40
 Identities = 69/158 (43%), Positives = 100/158 (63%), Gaps = 7/158 (4%)

Query: 2   ASTSFQNVSHGEYDAFLSFRGEDTRKRFIGHLYTALNNKGIYVFRDDKQLEKGGSISPNL 61
           +S+S +N     YD F SF GED R  F+ H    L+ K I  F+D+ ++E+  S+ P L
Sbjct: 4   SSSSSRNWV---YDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDN-EIERSQSLDPEL 59

Query: 62  LKTIEESRISIIVLSKNYASSTWCLDELLKIVECKNREDQ-IFPIFYEVEPTVVRKQTAS 120
            + I +SRI+++V SKNYASS+WCL+ELL+IV CK    Q + P+FY ++P+ VRKQT  
Sbjct: 60  KQAIRDSRIAVVVFSKNYASSSWCLNELLEIVRCKEELGQLVIPVFYGLDPSHVRKQTGD 119

Query: 121 FGEAFAKYEEFFRDNIEKVQKWRYALKVVANISGWELK 158
           FGEAF K  +      ++  +W+ AL  VANI G+  +
Sbjct: 120 FGEAFEKTCQ--NKTEDEKIQWKQALTDVANILGYHSQ 155

syringae 6; Provisional. Length = 1153

>gnl|CDD|214587 smart00255, TIR, Toll - interleukin 1 - resistance

 Score =  130 bits (328), Expect = 2e-39
 Identities = 65/144 (45%), Positives = 83/144 (57%), Gaps = 8/144 (5%)

Query: 13  EYDAFLSFRG-EDTRKRFIGHLYTALNNKGIYVFRDDKQLEKGGSISPNLLKTIEESRIS 71
           EYD F+S+ G ED R  F+ HL   L   G+ VF DD   E GG     + + IE+SRI+
Sbjct: 1   EYDVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDF--EPGGGDLEEIDEAIEKSRIA 58

Query: 72  IIVLSKNYASSTWCLDELLKIVECKNREDQ--IFPIFYEVEPTVVRKQTASFGEAFAK-Y 128
           I+VLS NYA S WCLDEL+  +E    E    + PIFYEV P+ VRKQ   F + F K Y
Sbjct: 59  IVVLSPNYAESEWCLDELVAALENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVFKKNY 118

Query: 129 EEFFRDNIEKVQKWRYALKVVANI 152
            ++  D  EK Q W+ AL  V + 
Sbjct: 119 LKWPED--EKEQFWKKALYAVPSK 140

Length = 140

>gnl|CDD|215626 PLN03194, PLN03194, putative disease resistance protein; Provisional

 Score = 63.7 bits (155), Expect = 3e-13
 Identities = 32/101 (31%), Positives = 53/101 (52%), Gaps = 3/101 (2%)

Query: 15  DAFLSFRGEDTRKRFIGHLYTALNNKGIYVFRDDKQLEKGGSISPNLLKTIEESRISIIV 74
           D F++ RG DT++     LY  L+   +  F D+K ++ G  +   +   I   ++ + V
Sbjct: 28  DVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIRNCKVGVAV 87

Query: 75  LSKNYASSTWCLDELLKIVECKNREDQIFPIFYEVEPTVVR 115
            S  Y  S +CL EL  I+E K R   + PIF +V+P+ +R
Sbjct: 88  FSPRYCESYFCLHELALIMESKKR---VIPIFCDVKPSQLR 125

Length = 187

>gnl|CDD|222311 pfam13676, TIR_2, TIR domain

 Score = 51.0 bits (123), Expect = 3e-09
 Identities = 21/92 (22%), Positives = 39/92 (42%), Gaps = 6/92 (6%)

Query: 17  FLSFRGEDTRKRFIGHLYTALNNKGIYVFRDDKQLEKGGSISPNLLKTIEESRISIIVLS 76
           F+S+   D  + +   L  AL   GI V+ D   +  G      + + +  + + +++LS
Sbjct: 2   FISYASAD--REWAEWLADALEAAGIRVWLD-WDIPPGEDWRDEIEEALRSADVVLVLLS 58

Query: 77  KNYASSTWCLDELLKIVECKNREDQIFPIFYE 108
             Y +S WC  E         R  ++ P+  E
Sbjct: 59  PAYLASPWCRAEWG---AALERGKRLIPVRLE 87

This is a family of bacterial Toll-like receptors. Length = 102

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	160
PLN03194	187	putative disease resistance protein; Provisional	100.0
PLN03210	1153	Resistant to P. syringae 6; Provisional	100.0
PF01582	141	TIR: TIR domain; InterPro: IPR000157 In Drosophila	99.95
smart00255	140	TIR Toll - interleukin 1 - resistance.	99.93
PF13676	102	TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_	99.78
KOG3678	832	consensus SARM protein (with sterile alpha and arm	99.34
PF08937	130	DUF1863: MTH538 TIR-like domain (DUF1863); InterPr	98.85
PF08357	150	SEFIR: SEFIR domain; InterPro: IPR013568 This doma	98.03
PF10137	125	TIR-like: Predicted nucleotide-binding protein con	97.38
PF13271	83	DUF4062: Domain of unknown function (DUF4062)	95.48
COG4916	329	Uncharacterized protein containing a TIR (Toll-Int	94.67
PF05014	113	Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransfer	93.6
COG4271	233	Predicted nucleotide-binding protein containing TI	86.5
cd00860	91	ThrRS_anticodon ThrRS Threonyl-anticodon binding d	84.7
COG0400	207	Predicted esterase [General function prediction on	80.63

>PLN03194 putative disease resistance protein; Provisional

Probab=100.00  E-value=3.1e-41  Score=251.16  Aligned_cols=139  Identities=25%  Similarity=0.483  Sum_probs=127.4

Q ss_pred             CCCCCCCCCcccEEEecccCCCchhHHHHHHHHHHcCCceEEeeCCCCCCCCCchHHHHHHHHhcceEEEEeecCCcCCh
Q 031401            4 TSFQNVSHGEYDAFLSFRGEDTRKRFIGHLYTALNNKGIYVFRDDKQLEKGGSISPNLLKTIEESRISIIVLSKNYASST   83 (160)
Q Consensus         4 ~sss~~~~~~yDVFISy~~~D~~~~fv~~L~~~L~~~g~~v~~d~~dl~~G~~~~~~i~~~i~~S~~~I~vlS~~~~~S~   83 (160)
                      .|+|++....|||||||+++|++..|+.+|+.+|+++||++|+|+.++.+|+.+.++|.++|++|+++|+|+|++|+.|.
T Consensus        17 ~~~~~~~~~~yDVFISFrG~DtR~~FvshL~~aL~~~GI~vF~D~~el~~G~~i~~~L~~AIeeSri~IvVfS~~Ya~S~   96 (187)
T PLN03194         17 YPSSSSSAKPCDVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIRNCKVGVAVFSPRYCESY   96 (187)
T ss_pred             cccCCCCCCCCcEEEeCCCccccccHHHHHHHHHHHCCCEEEEcCccccCCCcHHHHHHHHHHhCeEEEEEECCCcccch
Confidence            45666667889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhhcCCcceeEEeecCchhhhcc-cchHHHHHHHHHHhhccCHHHHHHHHHHHHHhhcccceeec
Q 031401           84 WCLDELLKIVECKNREDQIFPIFYEVEPTVVRKQ-TASFGEAFAKYEEFFRDNIEKVQKWRYALKVVANISGWELK  158 (160)
Q Consensus        84 wc~~El~~~~~~~~~~~~IiPI~~~~~p~~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~w~~al~~~~~~~G~~~~  158 (160)
                      ||++||..++++   +..||||||+|+|++|+.| .+.             .+++++++||+||+++++++|+.+.
T Consensus        97 WCLdEL~~I~e~---~~~ViPIFY~VdPsdVr~q~~~~-------------~~~e~v~~Wr~AL~~va~l~G~~~~  156 (187)
T PLN03194         97 FCLHELALIMES---KKRVIPIFCDVKPSQLRVVDNGT-------------CPDEEIRRFNWALEEAKYTVGLTFD  156 (187)
T ss_pred             hHHHHHHHHHHc---CCEEEEEEecCCHHHhhccccCC-------------CCHHHHHHHHHHHHHHhccccccCC
Confidence            999999999985   3579999999999999997 332             2368999999999999999999775

>PLN03210 Resistant to P

Probab=100.00  E-value=3.6e-39  Score=296.60  Aligned_cols=155  Identities=44%  Similarity=0.774  Sum_probs=145.3

Q ss_pred             CCCCCCCCCCCCcccEEEecccCCCchhHHHHHHHHHHcCCceEEeeCCCCCCCCCchHHHHHHHHhcceEEEEeecCCc
Q 031401            1 MASTSFQNVSHGEYDAFLSFRGEDTRKRFIGHLYTALNNKGIYVFRDDKQLEKGGSISPNLLKTIEESRISIIVLSKNYA   80 (160)
Q Consensus         1 m~s~sss~~~~~~yDVFISy~~~D~~~~fv~~L~~~L~~~g~~v~~d~~dl~~G~~~~~~i~~~i~~S~~~I~vlS~~~~   80 (160)
                      ||||||++ +.++|||||||+++|+|..|+.||+.+|.++||++|.|+ ++..|+.+..++.+||++|++.|+|+|++|+
T Consensus         1 ~~~~~~~~-~~~~~~vf~sfrg~d~r~~f~~hl~~~l~~~~i~~f~d~-~~~~g~~~~~~l~~~i~~s~~~ivv~s~~ya   78 (1153)
T PLN03210          1 MASSSSSS-RNWVYDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDN-EIERSQSLDPELKQAIRDSRIAVVVFSKNYA   78 (1153)
T ss_pred             CCCCCCCC-CCCCCcEEeeCCCcccccCHHHHHHHHHHHCCCeEEccC-CccCCCcccHHHHHHHHhCeEEEEEecCCcc
Confidence            67766555 578999999999999999999999999999999999987 6999999999999999999999999999999


Q ss_pred             CChhHHHHHHHHHHH-hhcCCcceeEEeecCchhhhcccchHHHHHHHHHHhhccCHHHHHHHHHHHHHhhcccceeecC
Q 031401           81 SSTWCLDELLKIVEC-KNREDQIFPIFYEVEPTVVRKQTASFGEAFAKYEEFFRDNIEKVQKWRYALKVVANISGWELKD  159 (160)
Q Consensus        81 ~S~wc~~El~~~~~~-~~~~~~IiPI~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~al~~~~~~~G~~~~~  159 (160)
                      .|.||++||.++++| +..+..|+||||+|+|++|+.|+|.||++|.++++...  ++++++||+||++|++++|+++.+
T Consensus        79 ~s~wcl~el~~i~~~~~~~~~~v~pvfy~v~p~~v~~~~g~f~~~f~~~~~~~~--~~~~~~w~~al~~~~~~~g~~~~~  156 (1153)
T PLN03210         79 SSSWCLNELLEIVRCKEELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQNKT--EDEKIQWKQALTDVANILGYHSQN  156 (1153)
T ss_pred             cchHHHHHHHHHHHhhhhcCceEEEEEecccHHHHhhccchHHHHHHHHhcccc--hhHHHHHHHHHHHHhCcCceecCC
Confidence            999999999999999 88899999999999999999999999999999887654  689999999999999999998754

syringae 6; Provisional

>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo

Probab=99.95  E-value=1.4e-28  Score=177.88  Aligned_cols=132  Identities=36%  Similarity=0.636  Sum_probs=117.2

Q ss_pred             EEEeccc-CCCchhHHHHHHHHHHcC--CceEEeeCCCCCCCCCchHHHHHHHHhcceEEEEeecCCcCChhHHHHHHHH
Q 031401           16 AFLSFRG-EDTRKRFIGHLYTALNNK--GIYVFRDDKQLEKGGSISPNLLKTIEESRISIIVLSKNYASSTWCLDELLKI   92 (160)
Q Consensus        16 VFISy~~-~D~~~~fv~~L~~~L~~~--g~~v~~d~~dl~~G~~~~~~i~~~i~~S~~~I~vlS~~~~~S~wc~~El~~~   92 (160)
                      |||||++ +| +..|+++|.++|++.  |+++|++++|+.+|..+.++|.++|++|+++|+|+|++|+.|.||+.|+..|
T Consensus         1 vfisy~~~~d-~~~~~~~L~~~Le~~~~g~~~c~~~rD~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~s~wc~~el~~a   79 (141)
T PF01582_consen    1 VFISYSGKDD-REWFVSHLLPELEERPYGYKLCLDERDFLPGESILDNIQEAIERSRRTIVVLSRNYLSSEWCLFELQEA   79 (141)
T ss_dssp             EEEEE-GHHG-HHHHHHCHHHHHHCTSSTS-EEEHHHCTSSSSCHHHHHHHHHHTEEEEEEEESHHHHHHTHHHHHHHHH
T ss_pred             cEEEeCCCCc-HHHHHHHHHHHHHhCCCCeEEEEechhhcccccccchhhHhhhhceeeEEEeecccccccchhhhhhhh
Confidence            8999999 55 467899999999999  9999999999999999999999999999999999999999999999999999


Q ss_pred             HHH-hhc--CCcceeEEeecCchhhh-cccchHHHHHHHHHHhhccC--HHHHHHHHHHHHH
Q 031401           93 VEC-KNR--EDQIFPIFYEVEPTVVR-KQTASFGEAFAKYEEFFRDN--IEKVQKWRYALKV  148 (160)
Q Consensus        93 ~~~-~~~--~~~IiPI~~~~~p~~v~-~~~~~~~~~~~~~~~~~~~~--~~~~~~w~~al~~  148 (160)
                      +++ ...  ..+|+|+|+++.+++++ .+.+.|+..|..+.+....+  .+....|++++.+
T Consensus        80 ~~~~~~~~~~~~Il~v~~~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~fW~~l~~~  141 (141)
T PF01582_consen   80 LERLLEEGRDKLILPVFYDVSPSDVRPDQSLRFLLRFLTYLRWPDDDSREDRSWFWKKLRYH  141 (141)
T ss_dssp             HHHHHCSTCTTEEEEESSSS-CHHCHTHHHHHHHHHCTHCEETSSSGGGGGHHHHHHHHHHH
T ss_pred             hhhccccccccceeeEeccCChhhcChhhhHHHHHHhhhheeCCCCCCccHHHHHHHHHhcC
Confidence            999 443  48999999999999999 69999999999988877654  5788999999763

In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....

>smart00255 TIR Toll - interleukin 1 - resistance

Probab=99.93  E-value=3.2e-25  Score=159.03  Aligned_cols=136  Identities=41%  Similarity=0.713  Sum_probs=114.1

Q ss_pred             cccEEEecccC-CCchhHHHHHHHHHHcCCceEEeeCCCCCCCCCchHHHHHHHHhcceEEEEeecCCcCChhHHHHHHH
Q 031401           13 EYDAFLSFRGE-DTRKRFIGHLYTALNNKGIYVFRDDKQLEKGGSISPNLLKTIEESRISIIVLSKNYASSTWCLDELLK   91 (160)
Q Consensus        13 ~yDVFISy~~~-D~~~~fv~~L~~~L~~~g~~v~~d~~dl~~G~~~~~~i~~~i~~S~~~I~vlS~~~~~S~wc~~El~~   91 (160)
                      .|||||||+++ +....|+.+|...|...|+.+|.|...  +|.....+|.++|++|+++|+++||+|+.|.||..|+..
T Consensus         1 ~~dvFISys~~~~~~~~~v~~L~~~l~~~~~~v~~d~~~--~~~~~~~~i~~~i~~s~~~i~vlS~~~~~S~w~~~E~~~   78 (140)
T smart00255        1 EYDVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDFE--PGGGDLEEIDEAIEKSRIAIVVLSPNYAESEWCLDELVA   78 (140)
T ss_pred             CCeEEEECCCCHHHHHHHHHHHHHHhhcCCcEEEecCcc--cccchHHHHHHHHHHCcEEEEEECcccccChhHHHHHHH
Confidence            59999999993 444688999999999999999999653  344444499999999999999999999999999999999


Q ss_pred             HHHH--hhcCCcceeEEeecCchhhhcccchHHHHHHHHHHhhccCHHHHHHHHHHHHHhhc
Q 031401           92 IVEC--KNREDQIFPIFYEVEPTVVRKQTASFGEAFAKYEEFFRDNIEKVQKWRYALKVVAN  151 (160)
Q Consensus        92 ~~~~--~~~~~~IiPI~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~al~~~~~  151 (160)
                      ++++  .....+||||+++..|+.+..+.+.++..+..+.....++..+ ..|+.++..+.+
T Consensus        79 a~~~~~~~~~~~iIPI~~~~~~~~~~~~~~~l~~~~~~~~~~w~~~~~~-~fW~~~~~~l~~  139 (140)
T smart00255       79 ALENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVLKKNYLKWPEDEKE-RFWKKALYAVPS  139 (140)
T ss_pred             HHHHHHHcCCCeEEEEEEecChHHHHhcccHHHHHHHHHHhhcCCchhH-HHHHHHHHHhcc
Confidence            9998  3477899999999999999999999999998875555543333 789999988764

>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A

Probab=99.78  E-value=3.7e-20  Score=126.42  Aligned_cols=87  Identities=33%  Similarity=0.554  Sum_probs=76.0

Q ss_pred             EEEecccCCCchhHHHHHHHHHHcCCceEEeeCCCCCCCCCchHHHHHHHHhcceEEEEeecCCcCChhHHHHHHHHHHH
Q 031401           16 AFLSFRGEDTRKRFIGHLYTALNNKGIYVFRDDKQLEKGGSISPNLLKTIEESRISIIVLSKNYASSTWCLDELLKIVEC   95 (160)
Q Consensus        16 VFISy~~~D~~~~fv~~L~~~L~~~g~~v~~d~~dl~~G~~~~~~i~~~i~~S~~~I~vlS~~~~~S~wc~~El~~~~~~   95 (160)
                      |||||+++|.  .++..|...|++.|+++|+|. ++.+|..+.+.|.++|++|+.+|+++|++|+.|+||..|+..+.+ 
T Consensus         1 VFIS~~~~D~--~~a~~l~~~L~~~g~~v~~d~-~~~~g~~~~~~i~~~i~~s~~~i~~~S~~~~~s~~~~~E~~~a~~-   76 (102)
T PF13676_consen    1 VFISYSSEDR--EFAERLAERLESAGIRVFLDR-DIPPGEDWREEIERAIERSDCVIVLLSPNYLKSPWCRFELGAAWK-   76 (102)
T ss_dssp             EEEEEEGGGC--CCHHHHHHHHHHTT--EE-GG-EE-TTS-HHCCCHHCCTTEEEEEEEEEHHHHCTHHHHHHHHHHHC-
T ss_pred             eEEEecCCcH--HHHHHHHHHHhhcCCEEEEEE-eCCCCCCHHHHHHHHHHhCCEEEEEECcccccChHHHHHHHHHHH-
Confidence            8999999995  579999999999999999997 999999999999999999999999999999999999999998854 


Q ss_pred             hhcCCcceeEEee
Q 031401           96 KNREDQIFPIFYE  108 (160)
Q Consensus        96 ~~~~~~IiPI~~~  108 (160)
                        .++.||||.++
T Consensus        77 --~~~~iipv~~~   87 (102)
T PF13676_consen   77 --RGKPIIPVRLD   87 (102)
T ss_dssp             --TSESEEEEECS
T ss_pred             --CCCEEEEEEEC
Confidence              45699999975

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=99.34  E-value=5.9e-12  Score=105.56  Aligned_cols=126  Identities=26%  Similarity=0.376  Sum_probs=96.3

Q ss_pred             CCCcccEEEecccCCCchhHHHHHHHHHHcCCceEEeeCCCCCCCCCchHHHHHHHHhcceEEEEeecCCc----CC---
Q 031401           10 SHGEYDAFLSFRGEDTRKRFIGHLYTALNNKGIYVFRDDKQLEKGGSISPNLLKTIEESRISIIVLSKNYA----SS---   82 (160)
Q Consensus        10 ~~~~yDVFISy~~~D~~~~fv~~L~~~L~~~g~~v~~d~~dl~~G~~~~~~i~~~i~~S~~~I~vlS~~~~----~S---   82 (160)
                      .++..||||||++... ...+..|.-.|+-+||+||+|...+..|. +.+.+.+.|..++.+|+|+||+.+    +.   
T Consensus       609 ~skq~DVFISYRRstG-nQLASLiKV~LQL~GyrVFIDVdKL~AGK-FdssLlkni~aAkhFiLVLtP~sLDr~lnD~nC  686 (832)
T KOG3678|consen  609 LSKQIDVFISYRRSTG-NQLASLIKVLLQLRGYRVFIDVDKLYAGK-FDSSLLKNIQAAKHFILVLTPNSLDRLLNDDNC  686 (832)
T ss_pred             ccCCcceEEEeecccc-HHHHHHHHHHHHhcCceEEEehhhhhccc-ccHHHHHHHHhhheeEEEeCcchHHHHhccccH
Confidence            4688999999988754 46788888889999999999999999987 568999999999999999999965    33   


Q ss_pred             -hhHHHHHHHHHHHhhcCCcceeEEee---------cCchhhhcccchHHHHHHHHHHhhccCHHHHHHH
Q 031401           83 -TWCLDELLKIVECKNREDQIFPIFYE---------VEPTVVRKQTASFGEAFAKYEEFFRDNIEKVQKW  142 (160)
Q Consensus        83 -~wc~~El~~~~~~~~~~~~IiPI~~~---------~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~w  142 (160)
                       .|.-.|+..+++   ..+.|||||-.         ..|.|++.....-|..|.+.++.-.  ++++.++
T Consensus       687 eDWVHKEl~~Afe---~~KNIiPI~D~aFE~Pt~ed~iPnDirmi~kyNGvKWvHdYQdA~--maKvvRF  751 (832)
T KOG3678|consen  687 EDWVHKELKCAFE---HQKNIIPIFDTAFEFPTKEDQIPNDIRMITKYNGVKWVHDYQDAC--MAKVVRF  751 (832)
T ss_pred             HHHHHHHHHHHHH---hcCCeeeeecccccCCCchhcCcHHHHHHHhccCeeeehhhHHHH--HHHHHHH
Confidence             455556555555   57799999833         6778887776666666666555433  3455444

>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments

Probab=98.85  E-value=6e-09  Score=74.26  Aligned_cols=92  Identities=21%  Similarity=0.379  Sum_probs=49.5

Q ss_pred             ccEEEecccCCCchhHHHHHHHHHHcC-------CceE-E---------eeCCCCCCCCCchHHHHHHHHhcceEEEEee
Q 031401           14 YDAFLSFRGEDTRKRFIGHLYTALNNK-------GIYV-F---------RDDKQLEKGGSISPNLLKTIEESRISIIVLS   76 (160)
Q Consensus        14 yDVFISy~~~D~~~~fv~~L~~~L~~~-------g~~v-~---------~d~~dl~~G~~~~~~i~~~i~~S~~~I~vlS   76 (160)
                      |.|||||++.|.. ..++.|...+...       ++.. +         -+..+......+...|.+.|..|.++||+++
T Consensus         1 ~~vFIS~~~~d~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~I~~~i~~s~~~IVLig   79 (130)
T PF08937_consen    1 YKVFISYSHDDDD-WYYDQLKEWLENSYEIPRDKNFDFRFYDVSKWEPIRSRDDDSSSEYIKRKIRERIKNSSVTIVLIG   79 (130)
T ss_dssp             ----------THH--HHHHHHHHHHH-------TTSS--BT---TTT---TTS---TTTTHHHHHHHHHHTEEEEEEE--
T ss_pred             CCccccccccCcH-HHHHHHHHHhccccccccccccccCcccccccCcccCccccchHHHHHHHHHHHHhcCCEEEEEeC
Confidence            6899999999863 2567777777663       2221 1         1222223344788899999999999999999


Q ss_pred             cCCcCChhHHHHHHHHHHHhhcCCcceeEEeec
Q 031401           77 KNYASSTWCLDELLKIVECKNREDQIFPIFYEV  109 (160)
Q Consensus        77 ~~~~~S~wc~~El~~~~~~~~~~~~IiPI~~~~  109 (160)
                      ++-..|.|+.+|+..++.   .+..||.|.++.
T Consensus        80 ~~T~~s~wV~~EI~~A~~---~~~~Ii~V~~~~  109 (130)
T PF08937_consen   80 PNTAKSKWVNWEIEYALK---KGKPIIGVYLPG  109 (130)
T ss_dssp             TT----HHHHHHHHHHTT---T---EEEEETT-
T ss_pred             CCcccCcHHHHHHHHHHH---CCCCEEEEECCC
Confidence            999999999999998887   577888887643

The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.

>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e

Probab=98.03  E-value=1.3e-05  Score=58.01  Aligned_cols=65  Identities=25%  Similarity=0.352  Sum_probs=54.1

Q ss_pred             cEEEecccCCCc-hhHHHHHHHHHHcC-CceEEeeCCCCCC--CCCchHHHHHHHHhcceEEEEeecCC
Q 031401           15 DAFLSFRGEDTR-KRFIGHLYTALNNK-GIYVFRDDKQLEK--GGSISPNLLKTIEESRISIIVLSKNY   79 (160)
Q Consensus        15 DVFISy~~~D~~-~~fv~~L~~~L~~~-g~~v~~d~~dl~~--G~~~~~~i~~~i~~S~~~I~vlS~~~   79 (160)
                      -|||||++.... ...|..|...|++. |+.|.+|..+...  +..+..=+.+.+++++.+|+|+||.+
T Consensus         2 kVfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~lD~~~~~~i~~~g~~~W~~~~~~~ad~Vliv~S~~~   70 (150)
T PF08357_consen    2 KVFISYSHDSEEHKEWVLALAEFLRQNCGIDVILDQWELNEIARQGPPRWMERQIREADKVLIVCSPGY   70 (150)
T ss_pred             eEEEEeCCCCHHHHHHHHHHHHHHHhccCCceeecHHhhcccccCCHHHHHHHHHhcCCEEEEEeccch
Confidence            499999995543 24588899999999 9999999988844  66777778889999999999999654

g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].

>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins

Probab=97.38  E-value=0.00086  Score=47.59  Aligned_cols=88  Identities=14%  Similarity=0.154  Sum_probs=66.0

Q ss_pred             cEEEecccCCCchhHHHHHHHHHHcCCceEEeeCCCCCCCCCchHHHHHHHHhcceEEEEeecCCc-------------C
Q 031401           15 DAFLSFRGEDTRKRFIGHLYTALNNKGIYVFRDDKQLEKGGSISPNLLKTIEESRISIIVLSKNYA-------------S   81 (160)
Q Consensus        15 DVFISy~~~D~~~~fv~~L~~~L~~~g~~v~~d~~dl~~G~~~~~~i~~~i~~S~~~I~vlS~~~~-------------~   81 (160)
                      .|||.|+ +|.  ..+..+...|+..|+.+.+-.+....|..+.+.+.+.+++++..|+++||+=.             .
T Consensus         1 kVFIvhg-~~~--~~~~~v~~~L~~~~~ep~i~~~~~~~g~tiie~le~~~~~~~faIvl~TpDD~~~~~~~~~~~~~~a   77 (125)
T PF10137_consen    1 KVFIVHG-RDL--AAAEAVERFLEKLGLEPIIWHEQPNLGQTIIEKLEEAADSVDFAIVLFTPDDIGYSRGEEEDLQPRA   77 (125)
T ss_pred             CEEEEeC-CCH--HHHHHHHHHHHhCCCceEEeecCCCCCCchHHHHHHHhccCCEEEEEEcccccccccCCcccccccc
Confidence            3899998 554  55778999999888888776667799999999999999999999999998511             2


Q ss_pred             ChhHHHHHHHHHHHhhcCCcceeEE
Q 031401           82 STWCLDELLKIVECKNREDQIFPIF  106 (160)
Q Consensus        82 S~wc~~El~~~~~~~~~~~~IiPI~  106 (160)
                      ......|+..++.+ ..+.+++.+.
T Consensus        78 R~NVifE~G~f~g~-LGr~rv~~l~  101 (125)
T PF10137_consen   78 RQNVIFELGLFIGK-LGRERVFILV  101 (125)
T ss_pred             ccceeehhhHHHhh-cCcceEEEEE
Confidence            23456788877774 2334455444

Their exact function has not, as yet, been defined.

>PF13271 DUF4062: Domain of unknown function (DUF4062)

Probab=95.48  E-value=0.072  Score=34.74  Aligned_cols=65  Identities=23%  Similarity=0.222  Sum_probs=48.4

Q ss_pred             EEEecccCCCchhHHHHHHHHHHcCCceEEeeCCCCC-CCCCchHHHHHHHHhcceEEEEeecCCcCC
Q 031401           16 AFLSFRGEDTRKRFIGHLYTALNNKGIYVFRDDKQLE-KGGSISPNLLKTIEESRISIIVLSKNYASS   82 (160)
Q Consensus        16 VFISy~~~D~~~~fv~~L~~~L~~~g~~v~~d~~dl~-~G~~~~~~i~~~i~~S~~~I~vlS~~~~~S   82 (160)
                      ||||=.-.|.. ...+.|...+.+.|+.+..-+. +. .+....+.+.+.|++|++.|.++-..|-..
T Consensus         2 VFiSSt~~Dl~-~eR~~l~~~i~~~~~~~~~~e~-~~a~~~~~~~~cl~~v~~cDifI~ilG~rYG~~   67 (83)
T PF13271_consen    2 VFISSTFRDLK-EERDALIEAIRRLGCEPVGMEF-FPASDQSPLEICLKEVDECDIFILILGNRYGSV   67 (83)
T ss_pred             EEEecChhhHH-HHHHHHHHHHHHCCCeeeeeee-ecCCCCCHHHHHHHHHhhCCEEEEeeccccCCC
Confidence            89998778864 4467788999887765544322 32 345556778899999999999999998754

>COG4916 Uncharacterized protein containing a TIR (Toll-Interleukin 1-resistance) domain [Function unknown]

Probab=94.67  E-value=0.047  Score=43.26  Aligned_cols=95  Identities=22%  Similarity=0.176  Sum_probs=64.4

Q ss_pred             CCCCcccEEEecccCCCchhHHHHHHHHHHcC--CceEEeeCCC---CCCCCCchHHHHHHH-HhcceEEEEeecCCcCC
Q 031401            9 VSHGEYDAFLSFRGEDTRKRFIGHLYTALNNK--GIYVFRDDKQ---LEKGGSISPNLLKTI-EESRISIIVLSKNYASS   82 (160)
Q Consensus         9 ~~~~~yDVFISy~~~D~~~~fv~~L~~~L~~~--g~~v~~d~~d---l~~G~~~~~~i~~~i-~~S~~~I~vlS~~~~~S   82 (160)
                      ...+.||+=+||.++-  ...|+.+..+++..  ....|+|-.-   |-+| ++.+-+...- .+|++.++.+..+|...
T Consensus       173 ~~~~~~DiG~SFaGEA--R~LVEqV~~E~~~~~~p~~~FYD~~~~~~L~~~-sL~~~L~~~Y~~rC~~~~VF~~~~Y~~K  249 (329)
T COG4916         173 SSEKPVDSGISFAGEA--RNLVEQVQTEHSGLDIPTRRFYDLLVAHPLYPG-SLVSTLDPGYDIRCVVTTVFNTGSYICK  249 (329)
T ss_pred             ccccccceeeEeehhh--hhHHHHHHHhhhcccCCceeeeechhhccccCc-cHHHhcccccCceEEEEEEEeCCceEEe
Confidence            3578899999999997  37799999999854  4555666421   2222 2322222222 37999999999999999


Q ss_pred             hhHHHHHHHHHHHhhcCCcceeEEe
Q 031401           83 TWCLDELLKIVECKNREDQIFPIFY  107 (160)
Q Consensus        83 ~wc~~El~~~~~~~~~~~~IiPI~~  107 (160)
                      .||..|...+-.- ..-+.+.||.+
T Consensus       250 ~~c~~E~~~~r~~-~~~d~~~rI~~  273 (329)
T COG4916         250 STCHIEGLEGRLN-PILDTGFRIKY  273 (329)
T ss_pred             eeeccchhhcccc-ccccccceEEE
Confidence            9999998755442 22335566655

>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2

Probab=93.60  E-value=1.6  Score=29.83  Aligned_cols=78  Identities=18%  Similarity=0.147  Sum_probs=52.9

Q ss_pred             hhHHHHHHHHHHcCCceEEeeCC-CCC---CCCCchHHH----HHHHHhcceEEEEeecCCcCChhHHHHHHHHHHHhhc
Q 031401           27 KRFIGHLYTALNNKGIYVFRDDK-QLE---KGGSISPNL----LKTIEESRISIIVLSKNYASSTWCLDELLKIVECKNR   98 (160)
Q Consensus        27 ~~fv~~L~~~L~~~g~~v~~d~~-dl~---~G~~~~~~i----~~~i~~S~~~I~vlS~~~~~S~wc~~El~~~~~~~~~   98 (160)
                      ..++..+.+.|+..|+.++.-.+ +..   .+..+..+|    .++|++|+++|+++...- .+.-+..|+..|..   .
T Consensus        13 ~~~~~~~~~~L~~~g~~v~~P~~~~~~~~~~~~~~~~~i~~~d~~~i~~~D~via~l~~~~-~d~Gt~~ElG~A~a---l   88 (113)
T PF05014_consen   13 KARVERLREALEKNGFEVYSPQDNDENDEEDSQEWAREIFERDLEGIRECDIVIANLDGFR-PDSGTAFELGYAYA---L   88 (113)
T ss_dssp             HHHHHHHHHHHHTTTTEEEGGCTCSSS--TTSHHCHHHHHHHHHHHHHHSSEEEEEECSSS---HHHHHHHHHHHH---T
T ss_pred             HHHHHHHHHHHHhCCCEEEeccccccccccccchHHHHHHHHHHHHHHHCCEEEEECCCCC-CCCcHHHHHHHHHH---C
Confidence            45688899999999998887542 111   123333444    468999999999988755 66788999998887   3


Q ss_pred             CCcceeEEee
Q 031401           99 EDQIFPIFYE  108 (160)
Q Consensus        99 ~~~IiPI~~~  108 (160)
                      +++|+-+.-+
T Consensus        89 gkpv~~~~~d   98 (113)
T PF05014_consen   89 GKPVILLTED   98 (113)
T ss_dssp             TSEEEEEECC
T ss_pred             CCEEEEEEcC
Confidence            4455444333

4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....

>COG4271 Predicted nucleotide-binding protein containing TIR -like domain [Transcription]

Probab=86.50  E-value=2.6  Score=32.38  Aligned_cols=87  Identities=16%  Similarity=0.163  Sum_probs=61.3

Q ss_pred             cEEEecccCCCchhHHHHHHHHHHcC-Cc-eEEeeCCCCCCCCCchHHHHHHHHhcceEEEEeecCCc-----C------
Q 031401           15 DAFLSFRGEDTRKRFIGHLYTALNNK-GI-YVFRDDKQLEKGGSISPNLLKTIEESRISIIVLSKNYA-----S------   81 (160)
Q Consensus        15 DVFISy~~~D~~~~fv~~L~~~L~~~-g~-~v~~d~~dl~~G~~~~~~i~~~i~~S~~~I~vlS~~~~-----~------   81 (160)
                      -|||-|+++.    .+.....+|++. .. .+|+|. -+..|..+.+.+.+.|.+++-.|++++|+=.     .      
T Consensus        84 kvFvv~ghd~----iArael~allrd~~l~~vi~d~-~~~~g~~ile~lek~i~~v~FAi~latPDDkgy~~~~~~~k~~  158 (233)
T COG4271          84 KVFVVSGHDA----IARAELEALLRDWKLEPVILDG-LFSEGQTILESLEKYIAEVKFAIVLATPDDKGYRAVHSREKAF  158 (233)
T ss_pred             eEEEEeccHH----HHHHHHHHHhhccccceEEecC-cccccHHHHHHHHHHhhhceEEEEEecCcccccccccchhhcc
Confidence            8999987653    466666677654 44 445554 6788999999999999999999999999833     1      


Q ss_pred             ---ChhHHHHHHHHHHHhhcCCcceeEEe
Q 031401           82 ---STWCLDELLKIVECKNREDQIFPIFY  107 (160)
Q Consensus        82 ---S~wc~~El~~~~~~~~~~~~IiPI~~  107 (160)
                         ......||...+.+ ..+.+|+.+..
T Consensus       159 praRqNVifELGm~mgr-LgRkrv~Il~k  186 (233)
T COG4271         159 PRARQNVIFELGMFMGR-LGRKRVMILMK  186 (233)
T ss_pred             ccccccchhhHhhHHhh-cccceEEEEec
Confidence               22346677777764 34456655554

>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain

Probab=84.70  E-value=5.4  Score=25.39  Aligned_cols=61  Identities=11%  Similarity=0.123  Sum_probs=40.2

Q ss_pred             ccEEEecccCCCchhHHHHHHHHHHcCCceEEeeCCCCCCCCCchHHHHHHHHhcceEEEEeecCC
Q 031401           14 YDAFLSFRGEDTRKRFIGHLYTALNNKGIYVFRDDKQLEKGGSISPNLLKTIEESRISIIVLSKNY   79 (160)
Q Consensus        14 yDVFISy~~~D~~~~fv~~L~~~L~~~g~~v~~d~~dl~~G~~~~~~i~~~i~~S~~~I~vlS~~~   79 (160)
                      ++|+|...+.+. ...+..+...|++.|+++-+|.+.    .++...+..+-..--..++++.++-
T Consensus         2 ~~v~ii~~~~~~-~~~a~~~~~~Lr~~g~~v~~d~~~----~~~~~~~~~a~~~g~~~~iiig~~e   62 (91)
T cd00860           2 VQVVVIPVTDEH-LDYAKEVAKKLSDAGIRVEVDLRN----EKLGKKIREAQLQKIPYILVVGDKE   62 (91)
T ss_pred             eEEEEEeeCchH-HHHHHHHHHHHHHCCCEEEEECCC----CCHHHHHHHHHHcCCCEEEEECcch
Confidence            677777655443 345778999999999999998643    3455566666544444555555543

ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.

>COG0400 Predicted esterase [General function prediction only]

Probab=80.63  E-value=8.8  Score=29.47  Aligned_cols=59  Identities=22%  Similarity=0.126  Sum_probs=45.5

Q ss_pred             CCCCCCcccEEEecccCCC--chhHHHHHHHHHHcCCceEEeeCCCCCCCCCchHHHHHHHHh
Q 031401            7 QNVSHGEYDAFLSFRGEDT--RKRFIGHLYTALNNKGIYVFRDDKQLEKGGSISPNLLKTIEE   67 (160)
Q Consensus         7 s~~~~~~yDVFISy~~~D~--~~~fv~~L~~~L~~~g~~v~~d~~dl~~G~~~~~~i~~~i~~   67 (160)
                      ..+..+..-|||+|...|.  ......+|.+.|+..|..|....-  ..|..+..+-.+.+++
T Consensus       140 ~~~~~~~~pill~hG~~Dpvvp~~~~~~l~~~l~~~g~~v~~~~~--~~GH~i~~e~~~~~~~  200 (207)
T COG0400         140 LLPDLAGTPILLSHGTEDPVVPLALAEALAEYLTASGADVEVRWH--EGGHEIPPEELEAARS  200 (207)
T ss_pred             cccccCCCeEEEeccCcCCccCHHHHHHHHHHHHHcCCCEEEEEe--cCCCcCCHHHHHHHHH
Confidence            3446788999999999997  345578899999999999988753  4788887766665543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	160
3jrn_A	176	Crystal Structure Of Tir Domain From Arabidopsis Th		1e-32
3ozi_A	204	Crystal Structure Of The Tir Domain From The Flax D		7e-32
1fyv_A	161	Crystal Structure Of The Tir Domain Of Human Tlr1 L		3e-05

>pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis Thaliana Length = 176

Iteration: 1
 Score =  135 bits (339), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 70/143 (48%), Positives = 91/143 (63%), Gaps = 3/143 (2%)
Query: 13  EYDAFLSFRGEDTRKRFIGHLYTALNNKGIYVFRDDKQLEKGGSISPNLLKTIEESRISI 72
           +YD FLSFRG DTR  FI  LY  L  + I  F+DDK+LE G   SP L   IE SR ++
Sbjct: 8   KYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAV 67
Query: 73  IVLSKNYASSTWCLDELLKIVECKNRED-QIFPIFYEVEPTVVRKQTASFGEAFAKYEEF 131
           +V+S+NYA+S+WCLDEL+ I++ + +    + PIFY VEP  VR QT    E F K+   
Sbjct: 68  VVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHAS- 126
Query: 132 FRDNIEKVQKWRYALKVVANISG 154
            R++ EKV KWR AL   A +SG
Sbjct: 127 -REDPEKVLKWRQALTNFAQLSG 148

>pdb|3OZI|A Chain A, Crystal Structure Of The Tir Domain From The Flax Disease Resistance Protein L6 Length = 204

Iteration: 1
 Score =  132 bits (333), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 71/159 (44%), Positives = 99/159 (62%), Gaps = 9/159 (5%)
Query: 2   ASTSFQNVSHGEYDAFLSFRGEDTRKRFIGHLYTALNNKGIYVFRDDKQLEKGGSISPNL 61
            S SF +V   EY+ FLSFRG DTR++F   LY +L    I+ FRDD +L KG  I PNL
Sbjct: 27  PSGSFPSV---EYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNL 83
Query: 62  LKTIEESRISIIVLSKNYASSTWCLDELLKIVECKNREDQ---IFPIFYEVEPTVVRKQT 118
           L+ I++S+I + ++S  YA S WCL EL +IV  +  ED    I PIFY V+P+ VR QT
Sbjct: 84  LRAIDQSKIYVPIISSGYADSKWCLMELAEIVR-RQEEDPRRIILPIFYMVDPSDVRHQT 142
Query: 119 ASFGEAFAKYEEFFRDNIEKVQKWRYALKVVANISGWEL 157
             + +AF K+   F  + + +Q W+ ALK V ++ GW +
Sbjct: 143 GCYKKAFRKHANKF--DGQTIQNWKDALKKVGDLKGWHI 179

>pdb|1FYV|A Chain A, Crystal Structure Of The Tir Domain Of Human Tlr1 Length = 161

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 13 EYDAFLSFRGEDTRKRFIGHLYTALNNKGIYVFRDDKQLEKGGSISPNLLKTIEESRISI 72
          ++ AF+S+ G D+       L   L  +G  +   ++    G SI  N++  IE+S  SI
Sbjct: 12 QFHAFISYSGHDSF-WVKNELLPNLEKEGXQICLHERNFVPGKSIVENIITCIEKSYKSI 70
Query: 73 IVLSKNYASSTWCLDEL 89
           VLS N+  S WC  EL
Sbjct: 71 FVLSPNFVQSEWCHYEL 87

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	160
3jrn_A	176	AT1G72930 protein; TIR domain arabidopsis thaliana	1e-87
3ozi_A	204	L6TR; plant TIR domain, plant protein; 2.30A {Linu	2e-85
3h16_A	154	TIR protein; bacteria TIR domain, signaling protei	4e-71
3ub2_A	146	TOLL/interleukin-1 receptor domain-containing ADA	5e-18
1t3g_A	159	X-linked interleukin-1 receptor accessory protein-	4e-11
2j67_A	178	TOLL like receptor 10; TIR, IL-1, TLR10, membrane,	7e-11
1fyx_A	149	TOLL-like receptor 2; beta-alpha-beta fold, signal	1e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-06
2js7_A	160	Myeloid differentiation primary response protein M	1e-05

>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana} Length = 176

 Score =  252 bits (647), Expect = 1e-87
 Identities = 73/160 (45%), Positives = 94/160 (58%), Gaps = 8/160 (5%)

Query: 1   MASTSFQNVSHGEYDAFLSFRGEDTRKRFIGHLYTALNNKGIYVFRDDKQLEKGGSISPN 60
           M+S +        YD FLSFRG DTR  FI  LY  L  + I  F+DDK+LE G   SP 
Sbjct: 1   MSSHTATK-----YDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPE 55

Query: 61  LLKTIEESRISIIVLSKNYASSTWCLDELLKIVECKNREDQI-FPIFYEVEPTVVRKQTA 119
           L   IE SR +++V+S+NYA+S+WCLDEL+ I++ + +      PIFY VEP  VR QT 
Sbjct: 56  LKSPIEVSRFAVVVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTG 115

Query: 120 SFGEAFAKYEEFFRDNIEKVQKWRYALKVVANISGWELKD 159
              E F K+    R++ EKV KWR AL   A +SG    D
Sbjct: 116 VLAEQFKKHAS--REDPEKVLKWRQALTNFAQLSGDCSGD 153

>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum} Length = 204

 Score =  248 bits (635), Expect = 2e-85
 Identities = 66/161 (40%), Positives = 97/161 (60%), Gaps = 5/161 (3%)

Query: 2   ASTSFQNVSHG-EYDAFLSFRGEDTRKRFIGHLYTALNNKGIYVFRDDKQLEKGGSISPN 60
            ST+        EY+ FLSFRG DTR++F   LY +L    I+ FRDD +L KG  I PN
Sbjct: 23  DSTNPSGSFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPN 82

Query: 61  LLKTIEESRISIIVLSKNYASSTWCLDELLKIVECKNREDQ--IFPIFYEVEPTVVRKQT 118
           LL+ I++S+I + ++S  YA S WCL EL +IV  +  + +  I PIFY V+P+ VR QT
Sbjct: 83  LLRAIDQSKIYVPIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQT 142

Query: 119 ASFGEAFAKYEEFFRDNIEKVQKWRYALKVVANISGWELKD 159
             + +AF K+    + + + +Q W+ ALK V ++ GW +  
Sbjct: 143 GCYKKAFRKHAN--KFDGQTIQNWKDALKKVGDLKGWHIGK 181

>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222} Length = 154

 Score =  210 bits (536), Expect = 4e-71
 Identities = 34/146 (23%), Positives = 64/146 (43%), Gaps = 4/146 (2%)

Query: 2   ASTSFQNVSHGEYDAFLSFRGEDTRKRFIGHLYTALNNKGIYVFRDDKQLEKGGSISPNL 61
            +T+    S   +D F+S   ED +  F+  L   L   G  V+ DD  L  G S+  ++
Sbjct: 9   PTTNADLTSAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSI 67

Query: 62  LKTIEESRISIIVLSKNYASSTWCLDELLKIVECKNREDQ-IFPIFYEVEPTVVRKQTAS 120
            K +  SR  I+VLS ++    W   EL  + + ++     I PI+++V    V   + +
Sbjct: 68  DKGLGSSRFGIVVLSTHFFKKEWPQKELDGLFQLESSGRSRILPIWHKVSKDEVASFSPT 127

Query: 121 FGEAFAKYEEFFRDNIEKVQKWRYAL 146
             +  A        +++++     A+
Sbjct: 128 MADKLAFNTS--TKSVDEIVADLMAI 151

>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A Length = 146

 Score = 74.7 bits (184), Expect = 5e-18
 Identities = 16/101 (15%), Positives = 38/101 (37%), Gaps = 5/101 (4%)

Query: 13  EYDAFLSFRGEDTRKRFIGHLYTAL--NNKGIYVFRDDKQLEKGGSISPNLLKTIEESRI 70
           +YD  +    ED        L + L  +   +  F   +    GG+I   L + +  S  
Sbjct: 10  DYDVCVCHSEED--LVAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHC 67

Query: 71  SIIVLSKNYASSTWCLDELLKIVECKNREDQ-IFPIFYEVE 110
            +++++  +    WC  ++L+ +      +    P+   + 
Sbjct: 68  RVLLITPGFLQDPWCKYQMLQALTEAPGAEGCTIPLLSGLS 108

>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens} Length = 159

 Score = 57.0 bits (137), Expect = 4e-11
 Identities = 24/111 (21%), Positives = 46/111 (41%), Gaps = 12/111 (10%)

Query: 13  EYDAFLSFRGEDTRKR---------FIGHLYTAL--NNKGIYVFRDDKQLEKGGSISPNL 61
           +YDA+LS+   D  +          F   +   +   + G  +F  D+ L   G+   ++
Sbjct: 2   DYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDV 61

Query: 62  LKTIEESRISIIVLSKNYA-SSTWCLDELLKIVECKNREDQIFPIFYEVEP 111
            + +++S+  IIV++ NY     W + EL   +       +I  I  E   
Sbjct: 62  ARCVDQSKRLIIVMTPNYVVRRGWSIFELETRLRNMLVTGEIKVILIECSE 112

>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A Length = 178

 Score = 56.5 bits (136), Expect = 7e-11
 Identities = 29/103 (28%), Positives = 41/103 (39%), Gaps = 5/103 (4%)

Query: 13  EYDAFLSFRGEDTRKRFIGHLYTAL--NNKGIYVFRDDKQLEKGGSISPNLLKTIEESRI 70
            + AF+S+   D        L   L   +  I +   +   + G SIS N++  IE+S  
Sbjct: 35  RFHAFISYSEHD-SLWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYK 93

Query: 71  SIIVLSKNYASSTWCLDELLKIVEC--KNREDQIFPIFYEVEP 111
           SI VLS N+  + WC  E             D I  I  E  P
Sbjct: 94  SIFVLSPNFVQNEWCHYEFYFAHHNLFHENSDHIILILLEPIP 136

>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A Length = 149

 Score = 47.5 bits (113), Expect = 1e-07
 Identities = 25/99 (25%), Positives = 38/99 (38%), Gaps = 5/99 (5%)

Query: 14  YDAFLSFRGEDTRKRFIGHLYTAL--NNKGIYVFRDDKQLEKGGSISPNLLKTIEESRIS 71
           YDAF+S+   D        +   L   N    +    +    G  I  N++ +IE+S  +
Sbjct: 6   YDAFVSYSERD-AYWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKT 64

Query: 72  IIVLSKNYASSTWCLDELLKIVEC--KNREDQIFPIFYE 108
           + VLS+N+  S W   EL            D    I  E
Sbjct: 65  VFVLSENFVKSEWXKYELDFSHFRLFDENNDAAILILLE 103

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 44.0 bits (104), Expect = 6e-06
 Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 10/84 (11%)

Query: 13  EYDAFLSFRGEDT---RKRFIGHLYTALNNKGIYVF----RDDKQLEKGGSISPNLLKTI 65
           +YDA+L F  +D    +   + HL T  +++  +      RD      G +   N+   I
Sbjct: 670 KYDAYLCFSSKDFTWVQNALLKHLDTQYSDQNRFNLCFEERD---FVPGENRIANIQDAI 726

Query: 66  EESRISIIVLSKNYASSTWCLDEL 89
             SR  + ++S+++    WCL+  
Sbjct: 727 WNSRKIVCLVSRHFLRDGWCLEAF 750

>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A Length = 160

 Score = 42.0 bits (99), Expect = 1e-05
 Identities = 20/101 (19%), Positives = 43/101 (42%), Gaps = 7/101 (6%)

Query: 13  EYDAFLSFRGEDTRKRFIGHLYTAL--NNKGIYVFRDDKQLEKGGSISPNLLKTIEE-SR 69
            +DAF+ +   D   +F+  +   L   N  + +   D+ +  G  +     + IE+  R
Sbjct: 16  RFDAFICYCPSD--IQFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCR 73

Query: 70  ISIIVLSKNYASSTWCLDELLKIVEC--KNREDQIFPIFYE 108
             ++V+S +Y  S  C  +    +       + ++ PI Y+
Sbjct: 74  RMVVVVSDDYLQSKECDFQTKFALSLSPGAHQKRLIPIKYK 114

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	160
3ozi_A	204	L6TR; plant TIR domain, plant protein; 2.30A {Linu	100.0
3jrn_A	176	AT1G72930 protein; TIR domain arabidopsis thaliana	100.0
3h16_A	154	TIR protein; bacteria TIR domain, signaling protei	100.0
3ub2_A	146	TOLL/interleukin-1 receptor domain-containing ADA	99.96
1t3g_A	159	X-linked interleukin-1 receptor accessory protein-	99.93
2js7_A	160	Myeloid differentiation primary response protein M	99.93
1fyx_A	149	TOLL-like receptor 2; beta-alpha-beta fold, signal	99.93
2j67_A	178	TOLL like receptor 10; TIR, IL-1, TLR10, membrane,	99.93
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.84
1eiw_A	111	Hypothetical protein MTH538; CHEY-like fold, flavo	98.42
3hyn_A	189	Putative signal transduction protein; DUF1863 fami	97.83
2f62_A	161	Nucleoside 2-deoxyribosyltransferase; SGPP, struct	94.23
2khz_A	165	C-MYC-responsive protein RCL; flexible loop, nucle	92.75
4fyk_A	152	Deoxyribonucleoside 5'-monophosphate N-glycosidas;	88.66
3ehd_A	162	Uncharacterized conserved protein; PSI,MCSG,PF0501	84.42

>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}

Probab=100.00  E-value=5.3e-50  Score=303.21  Aligned_cols=154  Identities=42%  Similarity=0.756  Sum_probs=141.0

Q ss_pred             CCCCCCCCcccEEEecccCCCchhHHHHHHHHHHcCCceEEeeCCCCCCCCCchHHHHHHHHhcceEEEEeecCCcCChh
Q 031401            5 SFQNVSHGEYDAFLSFRGEDTRKRFIGHLYTALNNKGIYVFRDDKQLEKGGSISPNLLKTIEESRISIIVLSKNYASSTW   84 (160)
Q Consensus         5 sss~~~~~~yDVFISy~~~D~~~~fv~~L~~~L~~~g~~v~~d~~dl~~G~~~~~~i~~~i~~S~~~I~vlS~~~~~S~w   84 (160)
                      |+++.+.++|||||||+++|+++.|+.+|+++|+++||++|+|++++.+|+.+.++|.++|++|+++|+|+|++|+.|.|
T Consensus        27 ~s~~~~~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~S~W  106 (204)
T 3ozi_A           27 PSGSFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKW  106 (204)
T ss_dssp             -------CCCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGGCHH
T ss_pred             CcCCCCCcCCeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccccCcH
Confidence            44555789999999999999988999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH-hh-cCCcceeEEeecCchhhhcccchHHHHHHHHHHhhccCHHHHHHHHHHHHHhhcccceeecCC
Q 031401           85 CLDELLKIVEC-KN-REDQIFPIFYEVEPTVVRKQTASFGEAFAKYEEFFRDNIEKVQKWRYALKVVANISGWELKDR  160 (160)
Q Consensus        85 c~~El~~~~~~-~~-~~~~IiPI~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~al~~~~~~~G~~~~~~  160 (160)
                      |+.||..+++| +. .+++||||||+|+|++||.|+|.||++|.++.+.+.  ++++++||.||+++++++||++.++
T Consensus       107 Cl~EL~~I~e~~~~~~~~~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~~~--~~~v~~Wr~AL~~va~lsG~~~~~~  182 (204)
T 3ozi_A          107 CLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKFD--GQTIQNWKDALKKVGDLKGWHIGKN  182 (204)
T ss_dssp             HHHHHHHHHHHHHHCTTSEECCEEESSCHHHHHHTCTTHHHHHHHHTTTSC--HHHHHHHHHHHHHHHTSCBEEECTT
T ss_pred             HHHHHHHHHHHHHhcCCeeeEEEEeecCHHHHHhccccHHHHHHHHHHhhC--HHHHHHHHHHHHHHhccCceecCCC
Confidence            99999999999 54 678999999999999999999999999999998875  5899999999999999999999764

>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}

Probab=100.00  E-value=5.3e-49  Score=292.77  Aligned_cols=148  Identities=48%  Similarity=0.780  Sum_probs=126.9

Q ss_pred             CCCcccEEEecccCCCchhHHHHHHHHHHcCCceEEeeCCCCCCCCCchHHHHHHHHhcceEEEEeecCCcCChhHHHHH
Q 031401           10 SHGEYDAFLSFRGEDTRKRFIGHLYTALNNKGIYVFRDDKQLEKGGSISPNLLKTIEESRISIIVLSKNYASSTWCLDEL   89 (160)
Q Consensus        10 ~~~~yDVFISy~~~D~~~~fv~~L~~~L~~~g~~v~~d~~dl~~G~~~~~~i~~~i~~S~~~I~vlS~~~~~S~wc~~El   89 (160)
                      ..++|||||||+++|++..|+.+|+++|+++|+++|+|++++.+|+.+.++|.++|++|+++|+|+|++|++|.||++||
T Consensus         5 ~~~~yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl~EL   84 (176)
T 3jrn_A            5 TATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDEL   84 (176)
T ss_dssp             --CCEEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHHHHHH
T ss_pred             CCCCCeEEEECcCcccChHHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHHHHH
Confidence            46899999999999998899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHH-hhcCCcceeEEeecCchhhhcccchHHHHHHHHHHhhccCHHHHHHHHHHHHHhhcccceeecC
Q 031401           90 LKIVEC-KNREDQIFPIFYEVEPTVVRKQTASFGEAFAKYEEFFRDNIEKVQKWRYALKVVANISGWELKD  159 (160)
Q Consensus        90 ~~~~~~-~~~~~~IiPI~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~al~~~~~~~G~~~~~  159 (160)
                      ..+++| +..+++||||||+++|++|+.|+|.||++|.++++.  .+++++++||+||+++++++|+++.+
T Consensus        85 ~~i~~~~~~~~~~ViPIfy~V~ps~Vr~q~g~fg~af~~~~~~--~~~~~~~~Wr~AL~~va~~~G~~~~~  153 (176)
T 3jrn_A           85 VTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASR--EDPEKVLKWRQALTNFAQLSGDCSGD  153 (176)
T ss_dssp             HHHHHHHHTTSCEEEEEECSSCHHHHHHTCTHHHHHHHHHHTT--SCHHHHHHHHHHHHHHTTSCCEECCS
T ss_pred             HHHHhhhccCCCEEEEEEecCCHHHhhhccCcHHHHHHHHHhc--cCHHHHHHHHHHHHHHhcccceecCC
Confidence            999999 888999999999999999999999999999999987  45799999999999999999999853

>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}

Probab=100.00  E-value=1.7e-35  Score=216.18  Aligned_cols=135  Identities=25%  Similarity=0.362  Sum_probs=118.0

Q ss_pred             CCCCcccEEEecccCCCchhHHHHHHHHHHcCCceEEeeCCCCCCCCCchHHHHHHHHhcceEEEEeecCCcCChhHHHH
Q 031401            9 VSHGEYDAFLSFRGEDTRKRFIGHLYTALNNKGIYVFRDDKQLEKGGSISPNLLKTIEESRISIIVLSKNYASSTWCLDE   88 (160)
Q Consensus         9 ~~~~~yDVFISy~~~D~~~~fv~~L~~~L~~~g~~v~~d~~dl~~G~~~~~~i~~~i~~S~~~I~vlS~~~~~S~wc~~E   88 (160)
                      ++.++|||||||+++| +..|+.+|..+|+++|+++|+|.+++.+|+.|.++|.++|++|+++|+|+|++|+.|.||+.|
T Consensus        16 ~~~~~~dvFISy~~~D-~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~E   94 (154)
T 3h16_A           16 TSAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQKE   94 (154)
T ss_dssp             --CCSEEEEEEEEGGG-TTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHHH
T ss_pred             CCCCCceEEEECcccC-hHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHHH
Confidence            4679999999999999 457999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHH-hhcCCcceeEEeecCchhhhcccchHHHHHHHHHHhhccCHHHHHHHHHHHHHh
Q 031401           89 LLKIVEC-KNREDQIFPIFYEVEPTVVRKQTASFGEAFAKYEEFFRDNIEKVQKWRYALKVV  149 (160)
Q Consensus        89 l~~~~~~-~~~~~~IiPI~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~al~~~  149 (160)
                      +..++++ ...+.+||||||+++|++|+.+.|.||+.|......     +.+.++.+.|.++
T Consensus        95 l~~~~~~~~~~~~~iiPV~~~v~p~~v~~~~~~~~~~~~~~~~~-----~~~~~ia~~l~~l  151 (154)
T 3h16_A           95 LDGLFQLESSGRSRILPIWHKVSKDEVASFSPTMADKLAFNTST-----KSVDEIVADLMAI  151 (154)
T ss_dssp             HHHHTCCCTTSCCCEEEEEESCCTGGGTTTCCCCCSSCCEETTT-----SCHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCEEEEEEecCCHHHHhhCCccHHHHHhhhcCc-----ccHHHHHHHHHHH
Confidence            9999998 777889999999999999999999999877665443     2244454455443

>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A

Probab=99.96  E-value=2e-31  Score=193.27  Aligned_cols=133  Identities=16%  Similarity=0.282  Sum_probs=93.1

Q ss_pred             CCCCCCCCcccEEEecccCCCchhHHHHHHHHHHc--CCceEEeeCCCCCCCCCchHHHHHHHHhcceEEEEeecCCcCC
Q 031401            5 SFQNVSHGEYDAFLSFRGEDTRKRFIGHLYTALNN--KGIYVFRDDKQLEKGGSISPNLLKTIEESRISIIVLSKNYASS   82 (160)
Q Consensus         5 sss~~~~~~yDVFISy~~~D~~~~fv~~L~~~L~~--~g~~v~~d~~dl~~G~~~~~~i~~~i~~S~~~I~vlS~~~~~S   82 (160)
                      |.|+..++.|||||||+++|.  .||.+|.++|++  .|+++|++++|+.||..+.++|.++|++|+++|+|+|++|++|
T Consensus         2 ~~~~r~~k~YDvFISy~~~D~--~~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S   79 (146)
T 3ub2_A            2 PGSSRWSKDYDVCVCHSEEDL--VAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQD   79 (146)
T ss_dssp             --CCTTSSSEEEEEECCGGGH--HHHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHHC
T ss_pred             CCCCCCCCcceEEEeCChhhH--HHHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccC
Confidence            445677899999999999996  568999999998  5999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHH-hhcCCcceeEEeecCchhhhcccch--------HHHHHHHHHHhhccCHHHHHHHHHHH
Q 031401           83 TWCLDELLKIVEC-KNREDQIFPIFYEVEPTVVRKQTAS--------FGEAFAKYEEFFRDNIEKVQKWRYAL  146 (160)
Q Consensus        83 ~wc~~El~~~~~~-~~~~~~IiPI~~~~~p~~v~~~~~~--------~~~~~~~~~~~~~~~~~~~~~w~~al  146 (160)
                      .||+.|+..|+++ .....+||||++++.++++....+.        ....|..+       .+.+.+|++||
T Consensus        80 ~wc~~El~~al~~~~~~~~~vIpv~~~v~~~~lp~~Lr~~~~id~~~~d~~f~~l-------~~~v~~~~~~~  145 (146)
T 3ub2_A           80 PWCKYQMLQALTEAPGAEGCTIPLLSGLSRAAYPPELRFMYYVDGRGPDGGFRQV-------KEAVMRYLQTL  145 (146)
T ss_dssp             HHHHHHHHHHHHTSSSSSSEEEEEECSCCGGGSCGGGGGSCCEETTSGGGGHHHH-------HHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHhhcCCcEEEEEcCCChhhCCHHHhCeeeeeccChHhhHHHH-------HHHHHHHHHhc
Confidence            9999999999998 3344478899998876665432221        12233333       36788888875

>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}

Probab=99.93  E-value=6.1e-27  Score=171.81  Aligned_cols=102  Identities=25%  Similarity=0.399  Sum_probs=90.7

Q ss_pred             CcccEEEecccCCCc---------hhHHHHHHH-HHH-cCCceEEeeCCCCCCCCCchHHHHHHHHhcceEEEEeecCCc
Q 031401           12 GEYDAFLSFRGEDTR---------KRFIGHLYT-ALN-NKGIYVFRDDKQLEKGGSISPNLLKTIEESRISIIVLSKNYA   80 (160)
Q Consensus        12 ~~yDVFISy~~~D~~---------~~fv~~L~~-~L~-~~g~~v~~d~~dl~~G~~~~~~i~~~i~~S~~~I~vlS~~~~   80 (160)
                      +.|||||||+++|.+         ..||.+|.+ .|+ +.||++|+|++|+.||..+.++|.++|++|+++|+|+|++|+
T Consensus         1 k~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~   80 (159)
T 1t3g_A            1 KDYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYV   80 (159)
T ss_dssp             CCBSEEEECCCCC-------CCSHHHHHHTHHHHHHHHTSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHH
T ss_pred             CCceEEEeCccccchhhhccchhhHHHHHHHHHHHHcCCCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchh
Confidence            579999999999963         568888555 699 689999999999999999999999999999999999999997


Q ss_pred             -CChhHHHHHHHHHHH--hhcCCcceeEEeecCchh
Q 031401           81 -SSTWCLDELLKIVEC--KNREDQIFPIFYEVEPTV  113 (160)
Q Consensus        81 -~S~wc~~El~~~~~~--~~~~~~IiPI~~~~~p~~  113 (160)
                       .|.||..|++.|+++  ...+.+||||++...+..
T Consensus        81 ~~S~wc~~El~~a~~~~~~~~~~~vI~I~~~~~~~~  116 (159)
T 1t3g_A           81 VRRGWSIFELETRLRNMLVTGEIKVILIECSELRGI  116 (159)
T ss_dssp             HTTTTHHHHHSHHHHHHHHTTSSEEEEEECSCCCSH
T ss_pred             hcChHHHHHHHHHHHHHHhcCCCEEEEEEecccccc
Confidence             999999999999998  666789999999866643

>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A

Probab=99.93  E-value=2.4e-27  Score=174.16  Aligned_cols=101  Identities=19%  Similarity=0.318  Sum_probs=92.3

Q ss_pred             CCCCcccEEEecccCCCchhHHHHHHHHHHcC--CceEEeeCCCCCCCCCchHHHHHHHH-hcceEEEEeecCCcCChhH
Q 031401            9 VSHGEYDAFLSFRGEDTRKRFIGHLYTALNNK--GIYVFRDDKQLEKGGSISPNLLKTIE-ESRISIIVLSKNYASSTWC   85 (160)
Q Consensus         9 ~~~~~yDVFISy~~~D~~~~fv~~L~~~L~~~--g~~v~~d~~dl~~G~~~~~~i~~~i~-~S~~~I~vlS~~~~~S~wc   85 (160)
                      ..++.|||||||+++|.  .||.+|.++|++.  |+++|++++|+.||..+.++|.++|+ +|+++|+|+|++|++|.||
T Consensus        12 ~~~~~yDvFISys~~D~--~fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~wc   89 (160)
T 2js7_A           12 HMPERFDAFICYCPSDI--QFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKEC   89 (160)
T ss_dssp             CCTTCEEEEEECCGGGH--HHHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHHH
T ss_pred             CCCcceEEEEEcccccH--HHHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHHH
Confidence            34789999999999994  7999999999985  79999999999999999999999999 7999999999999999999


Q ss_pred             HHHHHHHHHH--hhcCCcceeEEeecCc
Q 031401           86 LDELLKIVEC--KNREDQIFPIFYEVEP  111 (160)
Q Consensus        86 ~~El~~~~~~--~~~~~~IiPI~~~~~p  111 (160)
                      +.|+..|+++  ...+.+||||+|+..+
T Consensus        90 ~~El~~a~~~~~~~~~~~vIpV~~~~~~  117 (160)
T 2js7_A           90 DFQTKFALSLSPGAHQKRLIPIKYKAMK  117 (160)
T ss_dssp             HHHHHHHHHHCTTHHHHTEEEEESSCCC
T ss_pred             HHHHHHHHHHHHccCCCEEEEEEEcccc
Confidence            9999999998  4556799999998654

>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A

Probab=99.93  E-value=8.8e-28  Score=174.51  Aligned_cols=100  Identities=25%  Similarity=0.361  Sum_probs=91.7

Q ss_pred             CCCcccEEEecccCCCchhHHHH-HHHHHHcC--CceEEeeCCCCCCCCCchHHHHHHHHhcceEEEEeecCCcCChhHH
Q 031401           10 SHGEYDAFLSFRGEDTRKRFIGH-LYTALNNK--GIYVFRDDKQLEKGGSISPNLLKTIEESRISIIVLSKNYASSTWCL   86 (160)
Q Consensus        10 ~~~~yDVFISy~~~D~~~~fv~~-L~~~L~~~--g~~v~~d~~dl~~G~~~~~~i~~~i~~S~~~I~vlS~~~~~S~wc~   86 (160)
                      .++.|||||||+++|.  .||.+ |.++|++.  |+++|+|++|+.||..+.++|.++|++|+++|+|+|++|+.|.||+
T Consensus         2 ~~~~yDvFiSy~~~D~--~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~   79 (149)
T 1fyx_A            2 RNIXYDAFVSYSERDA--YWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXK   79 (149)
T ss_dssp             CSCCEEEEEECCGGGH--HHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHH
T ss_pred             CCccceEEEECCcccH--HHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHH
Confidence            4688999999999996  78986 99999986  9999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHH--hhcCCcceeEEeecCc
Q 031401           87 DELLKIVEC--KNREDQIFPIFYEVEP  111 (160)
Q Consensus        87 ~El~~~~~~--~~~~~~IiPI~~~~~p  111 (160)
                      .|+..|+++  ...+.+||||+++..+
T Consensus        80 ~El~~a~~~~~~~~~~~vIpv~~~~i~  106 (149)
T 1fyx_A           80 YELDFSHFRLFDENNDAAILILLEPIE  106 (149)
T ss_dssp             HHSCCSCCTTCGGGTTCCEEEESSCCC
T ss_pred             HHHHHHHHHHHhcCCCEEEEEEecCCC
Confidence            999999865  5677899999996443

>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A

Probab=99.93  E-value=1.8e-27  Score=177.62  Aligned_cols=103  Identities=28%  Similarity=0.442  Sum_probs=89.8

Q ss_pred             CCCCCcccEEEecccCCCchhHHHH-HHHHHHc--CCceEEeeCCCCCCCCCchHHHHHHHHhcceEEEEeecCCcCChh
Q 031401            8 NVSHGEYDAFLSFRGEDTRKRFIGH-LYTALNN--KGIYVFRDDKQLEKGGSISPNLLKTIEESRISIIVLSKNYASSTW   84 (160)
Q Consensus         8 ~~~~~~yDVFISy~~~D~~~~fv~~-L~~~L~~--~g~~v~~d~~dl~~G~~~~~~i~~~i~~S~~~I~vlS~~~~~S~w   84 (160)
                      ...++.|||||||+++|.  .||.+ |.++|++  .|+++|+|++|+.||..+.++|.++|++|+++|+|+|++|+.|.|
T Consensus        30 ~~~~~~yDvFISys~~D~--~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~w  107 (178)
T 2j67_A           30 LKRNVRFHAFISYSEHDS--LWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEW  107 (178)
T ss_dssp             CCCSCCEEEEEECCGGGH--HHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHTG
T ss_pred             cCCCccceEEEECCCCCH--HHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccch
Confidence            456889999999999995  78975 9999998  799999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH--hhcCCcceeEEeecCch
Q 031401           85 CLDELLKIVEC--KNREDQIFPIFYEVEPT  112 (160)
Q Consensus        85 c~~El~~~~~~--~~~~~~IiPI~~~~~p~  112 (160)
                      |+.|+..|+++  ...+.+||||+++..|.
T Consensus       108 c~~El~~a~~~~~~~~~~~vIpV~~~~i~~  137 (178)
T 2j67_A          108 CHYEFYFAHHNLFHENSDHIILILLEPIPF  137 (178)
T ss_dssp             GGTHHHHTTCC-------CEEEEESSCCCG
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEEEecCCCh
Confidence            99999999976  55677999999975444

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.84  E-value=1.4e-21  Score=173.72  Aligned_cols=103  Identities=17%  Similarity=0.335  Sum_probs=93.8

Q ss_pred             CCCCcccEEEecccCCCchhHH-HHHHHHHHc-----CCceEEeeCCCCCCCCCchHHHHHHHHhcceEEEEeecCCcCC
Q 031401            9 VSHGEYDAFLSFRGEDTRKRFI-GHLYTALNN-----KGIYVFRDDKQLEKGGSISPNLLKTIEESRISIIVLSKNYASS   82 (160)
Q Consensus         9 ~~~~~yDVFISy~~~D~~~~fv-~~L~~~L~~-----~g~~v~~d~~dl~~G~~~~~~i~~~i~~S~~~I~vlS~~~~~S   82 (160)
                      ..++.|||||||+++|.  .|| .+|.+.||+     .|+++|+++||+.||..+.++|.++|++||++|+|+|++|+.|
T Consensus       666 ~~~~~yd~fisy~~~d~--~~v~~~l~~~Le~~~~~~~~~~~~~~~rd~~~G~~~~~~i~~~i~~sr~~i~vls~~~~~s  743 (844)
T 3j0a_A          666 PDMYKYDAYLCFSSKDF--TWVQNALLKHLDTQYSDQNRFNLCFEERDFVPGENRIANIQDAIWNSRKIVCLVSRHFLRD  743 (844)
T ss_dssp             SSCCCCSEEEECCSTTH--HHHHHTHHHHHHSTTTTTTCSCEECSSSSCCSSSCHHHHHHHHHHHSSEEEEEECTTHHHH
T ss_pred             ccceeccEEEEeeCCcH--HHHHHHHHHHHhhccccCCceEEEEEccccCCCchHHHHHHHHHHHhCeEEEEeccccccC
Confidence            35789999999999996  567 669999996     4899999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHH--hhcCCcceeEEeecCchh
Q 031401           83 TWCLDELLKIVEC--KNREDQIFPIFYEVEPTV  113 (160)
Q Consensus        83 ~wc~~El~~~~~~--~~~~~~IiPI~~~~~p~~  113 (160)
                      .||..|++.|+++  ++.+++|||||++..|..
T Consensus       744 ~wc~~e~~~a~~~~~~~~~~~~i~i~~~~~~~~  776 (844)
T 3j0a_A          744 GWCLEAFSYAQGRCLSDLNSALIMVVVGSLSQY  776 (844)
T ss_dssp             TSTTHHHHHHHSCCCCSSCTTEEEEESSCCCSS
T ss_pred             hHHHHHHHHHHHHHHHhcCCcEEEEEeccCChH
Confidence            9999999999988  677889999999876643

>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1

Probab=98.42  E-value=1.7e-07  Score=64.27  Aligned_cols=73  Identities=11%  Similarity=0.038  Sum_probs=56.9

Q ss_pred             CcccEEEecccCCCchhHHHHHHHHHHcCCceEEeeCCCCCCCCCchHHHHHHHHhcceEEEEeecCCcCChhHHHHHHH
Q 031401           12 GEYDAFLSFRGEDTRKRFIGHLYTALNNKGIYVFRDDKQLEKGGSISPNLLKTIEESRISIIVLSKNYASSTWCLDELLK   91 (160)
Q Consensus        12 ~~yDVFISy~~~D~~~~fv~~L~~~L~~~g~~v~~d~~dl~~G~~~~~~i~~~i~~S~~~I~vlS~~~~~S~wc~~El~~   91 (160)
                      ++|.+||||+.+| .   .+.|...|.+.|+...-                ..|+.|.++|++.++....|+||.+|+..
T Consensus         3 ~~~~lFISh~~~d-~---~~~L~~~l~~~~f~~~~----------------~~I~~~~~vIvL~G~~t~~s~wv~~EI~~   62 (111)
T 1eiw_A            3 AEIRLYITEGEVE-D---YRVFLERLEQSGLEWRP----------------ATPEDADAVIVLAGLWGTRRDEILGAVDL   62 (111)
T ss_dssp             CCEEEEECCCCSH-H---HHHHHHHHHHHCSCEEE----------------CCSSSCSEEEEEGGGTTTSHHHHHHHHHH
T ss_pred             ceEEEEEecccHh-H---HHHHHHHHhCCCCeeec----------------CccccCCEEEEEeCCCcCCChHHHHHHHH
Confidence            5799999999998 2   45666666533554331                67899999999999999999999999987


Q ss_pred             HHHHhhcCCcceeEEe
Q 031401           92 IVECKNREDQIFPIFY  107 (160)
Q Consensus        92 ~~~~~~~~~~IiPI~~  107 (160)
                      |.+   .+++||-|.-
T Consensus        63 A~~---~gkpIigV~~   75 (111)
T 1eiw_A           63 ARK---SSKPIITVRP   75 (111)
T ss_dssp             HTT---TTCCEEEECC
T ss_pred             HHH---cCCCEEEEEc
Confidence            765   5677777764

>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}

Probab=97.83  E-value=6.2e-05  Score=55.47  Aligned_cols=92  Identities=16%  Similarity=0.221  Sum_probs=69.1

Q ss_pred             cccEEEec--------------ccCCCchhHHHHHHHHHHcCCceEEeeCCCCC-------C-CCCchHHHHHHHHhcce
Q 031401           13 EYDAFLSF--------------RGEDTRKRFIGHLYTALNNKGIYVFRDDKQLE-------K-GGSISPNLLKTIEESRI   70 (160)
Q Consensus        13 ~yDVFISy--------------~~~D~~~~fv~~L~~~L~~~g~~v~~d~~dl~-------~-G~~~~~~i~~~i~~S~~   70 (160)
                      +--+||+|              +.+|  ....+.|..--++...--|.|..++.       . -..|.+.|.+.|.+|+.
T Consensus         5 rn~~YvaF~~~~~~~~~~~~~~a~~D--i~yy~lL~aWk~n~n~F~F~D~Hd~~y~vrDsS~~e~tIKrrLReRI~~Sk~   82 (189)
T 3hyn_A            5 QNANYSAFYVSEPFSESNLGANSTHD--FVYYNMLRMWKGEDNSFPFNDAHDKTYNVRDGSDWEKTLKPRLHTRLDNSKN   82 (189)
T ss_dssp             CCEEEEECCCCSSCCTTSTTGGGSTT--HHHHHHHHHHHHHCTTSSCCBTTTTCCCTTSCCCTTTTHHHHHHHHHHTEEE
T ss_pred             ccCcEEEEeccCcccccccCCCccch--HHHHHHHHHHHcCCCceeecchhhccccccccccHHHHHHHHHHHHHHhcCc
Confidence            34578888              3444  34567777666666665577765552       2 23577899999999999


Q ss_pred             EEEEeecCCcCChhHHHHHHHHHHHhhcCCcceeEEee
Q 031401           71 SIIVLSKNYASSTWCLDELLKIVECKNREDQIFPIFYE  108 (160)
Q Consensus        71 ~I~vlS~~~~~S~wc~~El~~~~~~~~~~~~IiPI~~~  108 (160)
                      +|+++|++...+.|..+|++.|++  ..+.+||-|..+
T Consensus        83 vIllIs~~T~~s~~v~wEIe~Ai~--~~~~PII~Vy~~  118 (189)
T 3hyn_A           83 IILFLSSITANSRALREEMNYGIG--TKGLPVIVIYPD  118 (189)
T ss_dssp             EEEECCTTCCCCHHHHHHHHHHTT--TTCCCEEEEETT
T ss_pred             EEEEEecCccccchhHHHHHHHHH--hcCCcEEEEECC
Confidence            999999999999999999998882  257788888765

>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*

Probab=94.23  E-value=0.49  Score=33.84  Aligned_cols=73  Identities=8%  Similarity=0.085  Sum_probs=52.6

Q ss_pred             hHHHHHHHHHHcCCceEEeeCCCCCCCCCchHHH----HHHHHhcceEEEEeec--CCcCChhHHHHHHHHHHHhhcCCc
Q 031401           28 RFIGHLYTALNNKGIYVFRDDKQLEKGGSISPNL----LKTIEESRISIIVLSK--NYASSTWCLDELLKIVECKNREDQ  101 (160)
Q Consensus        28 ~fv~~L~~~L~~~g~~v~~d~~dl~~G~~~~~~i----~~~i~~S~~~I~vlS~--~~~~S~wc~~El~~~~~~~~~~~~  101 (160)
                      .+...+...|++.|+.+++-..+   ...+...|    .++|++|+++|.+++|  .-..+.-...|+..|..   .++.
T Consensus        27 ~~~~~l~~~l~~~G~~v~~P~~~---~~~~~~~i~~~d~~~i~~aD~vVA~ldpf~g~~~D~GTafEiGyA~A---lgKP  100 (161)
T 2f62_A           27 SYYNKVRELLKKENVMPLIPTDN---EATEALDIRQKNIQMIKDCDAVIADLSPFRGHEPDCGTAFEVGCAAA---LNKM  100 (161)
T ss_dssp             HHHHHHHHHHHTTTCEEECTTTT---CCSSHHHHHHHHHHHHHHCSEEEEECCCCSSSSCCHHHHHHHHHHHH---TTCE
T ss_pred             HHHHHHHHHHHHCCCEEECCCcc---CcchHHHHHHHHHHHHHhCCEEEEEecCCCCCCCCCcHHHHHHHHHH---CCCE
Confidence            56888999999999998873211   11244444    6899999999999997  44456678999998887   4555


Q ss_pred             ceeEE
Q 031401          102 IFPIF  106 (160)
Q Consensus       102 IiPI~  106 (160)
                      |+-+.
T Consensus       101 Vi~l~  105 (161)
T 2f62_A          101 VLTFT  105 (161)
T ss_dssp             EEEEC
T ss_pred             EEEEE
Confidence            55543

>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*

Probab=92.75  E-value=1.9  Score=30.66  Aligned_cols=88  Identities=13%  Similarity=0.129  Sum_probs=56.3

Q ss_pred             CCcccEEEecccC-CCc-hhHHHHHHHHHHcCCceEEeeCCCC----CCCCC-------chHHHHHHHHhcceEEEEeec
Q 031401           11 HGEYDAFLSFRGE-DTR-KRFIGHLYTALNNKGIYVFRDDKQL----EKGGS-------ISPNLLKTIEESRISIIVLSK   77 (160)
Q Consensus        11 ~~~yDVFISy~~~-D~~-~~fv~~L~~~L~~~g~~v~~d~~dl----~~G~~-------~~~~i~~~i~~S~~~I~vlS~   77 (160)
                      ++...|||+=.-. +.. ......+...|++.| .|..+..-.    ..|..       +...-.+.|++|+++|++++ 
T Consensus         9 ~~~~kVYLAGp~~~~~~~~~~~~~i~~~l~~~G-~V~~~~~~~p~~~~~g~~~~~~~~~i~~~d~~~i~~aD~vva~~~-   86 (165)
T 2khz_A            9 QAPCSVYFCGSIRGGREDQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQDLNWLQQADVVVAEVT-   86 (165)
T ss_dssp             CCCCEEEEECCCSSCSHHHHHHHHHHHHHHHHS-EESGGGTTTTSSSCCSTTSTTCHHHHHHHHHHHHHHCSEEEEECS-
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHHHHhcC-CcccccccCchhhccccccccCHHHHHHHHHHHHHhCCEEEEECC-
Confidence            3346799985433 211 224578999999999 886543211    11211       11222478999999999997 


Q ss_pred             CCcCChhHHHHHHHHHHHhhcCCcceeE
Q 031401           78 NYASSTWCLDELLKIVECKNREDQIFPI  105 (160)
Q Consensus        78 ~~~~S~wc~~El~~~~~~~~~~~~IiPI  105 (160)
                        -.+.-+..|+..|..   .++.|+-+
T Consensus        87 --~~d~Gt~~EiGyA~a---lgKPVi~l  109 (165)
T 2khz_A           87 --QPSLGVGYELGRAVA---LGKPILCL  109 (165)
T ss_dssp             --SCCHHHHHHHHHHHH---TCSSEEEE
T ss_pred             --CCCCCHHHHHHHHHH---CCCEEEEE
Confidence              567889999998887   45566554

>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*

Probab=88.66  E-value=3.9  Score=28.86  Aligned_cols=72  Identities=18%  Similarity=0.236  Sum_probs=47.3

Q ss_pred             hHHHHHHHHHHcCCceEEeeCC---CC-CCCCC-------chHHHHHHHHhcceEEEEeecCCcCChhHHHHHHHHHHHh
Q 031401           28 RFIGHLYTALNNKGIYVFRDDK---QL-EKGGS-------ISPNLLKTIEESRISIIVLSKNYASSTWCLDELLKIVECK   96 (160)
Q Consensus        28 ~fv~~L~~~L~~~g~~v~~d~~---dl-~~G~~-------~~~~i~~~i~~S~~~I~vlS~~~~~S~wc~~El~~~~~~~   96 (160)
                      .+...+...|++.| .|+...-   ++ ..|..       +.+.-.+.|++|+++|.+++   ..|.-...|+..|..  
T Consensus        19 ~~~~~i~~~L~~~G-~Vl~~hv~~~~l~~~g~~~~~~~~~i~~~d~~~i~~aD~vvA~l~---~~d~Gt~~EiG~A~a--   92 (152)
T 4fyk_A           19 ALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQNLNWLQQADVVVAEVT---QPSLGVGYELGRAVA--   92 (152)
T ss_dssp             HHHHHHHHHHTTTS-EECCCC-------------CCCHHHHHHHHHHHHHHCSEEEEECS---SCCHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHcC-cccccccCchhhhhccccccCCHHHHHHHHHHHHHHCCEEEEeCC---CCCCCHHHHHHHHHH--
Confidence            45788999999999 6643211   11 01111       33444578999999999998   567788999998887  


Q ss_pred             hcCCcceeEE
Q 031401           97 NREDQIFPIF  106 (160)
Q Consensus        97 ~~~~~IiPI~  106 (160)
                       .+++|+-++
T Consensus        93 -lgkPV~~l~  101 (152)
T 4fyk_A           93 -LGKPILCLF  101 (152)
T ss_dssp             -TTCCEEEEE
T ss_pred             -cCCeEEEEE
Confidence             345555444

>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}

Probab=84.42  E-value=9  Score=27.22  Aligned_cols=77  Identities=9%  Similarity=0.113  Sum_probs=52.3

Q ss_pred             hHHHHHHHHHHcC--CceEEeeCCCC----CCCCCchHHHH----HHHHhcceEEEEeecCCcCChhHHHHHHHHHHHhh
Q 031401           28 RFIGHLYTALNNK--GIYVFRDDKQL----EKGGSISPNLL----KTIEESRISIIVLSKNYASSTWCLDELLKIVECKN   97 (160)
Q Consensus        28 ~fv~~L~~~L~~~--g~~v~~d~~dl----~~G~~~~~~i~----~~i~~S~~~I~vlS~~~~~S~wc~~El~~~~~~~~   97 (160)
                      .+...+..+|+..  |+.++.=.++-    .++..+...|.    ++|++|+++|.++. ....+..+..|+..|..   
T Consensus        20 ~~~~~l~~~L~~~~~g~~v~~P~~~~~~~~~~~~~~~~~i~~~D~~~i~~aD~viA~ld-g~~~D~Gt~~EiG~A~a---   95 (162)
T 3ehd_A           20 RYNAYLVEQIRQLDKTIDLYLPQENAAINDKSAYADSKMIALADTENVLASDLLVALLD-GPTIDAGVASEIGVAYA---   95 (162)
T ss_dssp             HHHHHHHHHHHTTCTTEEEECGGGGSCCCCTTCCCCHHHHHHHHHHHHHTCSEEEEECC-SSSCCHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHhcCCCCEEECCCccccccccccchHHHHHHHHHHHHHHHCCEEEEECC-CCCCCCCHHHHHHHHHH---
Confidence            4577799999875  88887632221    12333444444    57999999999995 34467889999998887   


Q ss_pred             cCCcceeEEee
Q 031401           98 REDQIFPIFYE  108 (160)
Q Consensus        98 ~~~~IiPI~~~  108 (160)
                      .+++|+.+.-+
T Consensus        96 ~gkPVi~~~~D  106 (162)
T 3ehd_A           96 KGIPVVALYTD  106 (162)
T ss_dssp             TTCCEEEECCC
T ss_pred             CCCEEEEEEcC
Confidence            45566665433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	160
d1fyva_	161	c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (H	3e-22
d1fyxa_	149	c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (H	2e-18

>d1fyva_ c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (Homo sapiens) [TaxId: 9606]} Length = 161

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 1, TLR1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.8 bits (209), Expect = 3e-22
 Identities = 34/144 (23%), Positives = 60/144 (41%), Gaps = 9/144 (6%)

Query: 13  EYDAFLSFRGEDTRKRFIGHLYTALNNKGIYVFRDDKQLEKGGSISPNLLKTIEESRISI 72
           ++ AF+S+ G D+       L   L  +G+ +   ++    G SI  N++  IE+S  SI
Sbjct: 12  QFHAFISYSGHDSFW-VKNELLPNLEKEGMQICLHERNFVPGKSIVENIITCIEKSYKSI 70

Query: 73  IVLSKNYASSTWCLDELLKIVEC--KNREDQIFPIFYEVEPTVVRKQTASFGEAFAK--- 127
            VLS N+  S WC  EL            + +  I  E  P      +    ++      
Sbjct: 71  FVLSPNFVQSEWCHYELYFAHHNLFHEGSNSLILILLEPIPQYSIPSSYHKLKSLMARRT 130

Query: 128 YEEFFRDNIEKVQKW---RYALKV 148
           Y E+ ++  ++   W   R A+ +
Sbjct: 131 YLEWPKEKSKRGLFWANLRAAINI 154

>d1fyxa_ c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (Homo sapiens) [TaxId: 9606]} Length = 149

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 2, TLR2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.8 bits (183), Expect = 2e-18
 Identities = 31/145 (21%), Positives = 46/145 (31%), Gaps = 11/145 (7%)

Query: 13  EYDAFLSFRGEDTRKRFIGHLYTAL--NNKGIYVFRDDKQLEKGGSISPNLLKTIEESRI 70
            YDAF+S+   D        +   L   N    +    +    G  I  N++ +IE+S  
Sbjct: 5   CYDAFVSYSERD-AYWVENLMVQELENFNPPFKLCLHKRDFIHGKWIIDNIIDSIEKSHK 63

Query: 71  SIIVLSKNYASSTWCLDELLKIVECKNRE--DQIFPIFYEVEPTVVRKQTASFGEAFAK- 127
           ++ VLS+N+  S WC  EL         E  D    I  E        Q           
Sbjct: 64  TVFVLSENFVKSEWCKYELDFSHFRLFDENNDAAILILLEPIEKKAIPQRFCKLRKIMNT 123

Query: 128 -----YEEFFRDNIEKVQKWRYALK 147
                +              R A+K
Sbjct: 124 KTYLEWPMDEAQREGFWVNLRAAIK 148

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	160
d1fyva_	161	Toll-like receptor 1, TLR1 {Human (Homo sapiens) [	99.92
d1fyxa_	149	Toll-like receptor 2, TLR2 {Human (Homo sapiens) [	99.91
d2f62a1	152	Nucleoside 2-deoxyribosyltransferase {Trypanosoma	92.48
d1wu7a1	97	Histidyl-tRNA synthetase (HisRS), C-terminal domai	92.46
d1kmma1	99	Histidyl-tRNA synthetase (HisRS), C-terminal domai	82.42

>d1fyva_ c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 1, TLR1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1e-26  Score=169.06  Aligned_cols=105  Identities=28%  Similarity=0.487  Sum_probs=94.7

Q ss_pred             CCCCCCcccEEEecccCCCchhHH-HHHHHHHHcCCceEEeeCCCCCCCCCchHHHHHHHHhcceEEEEeecCCcCChhH
Q 031401            7 QNVSHGEYDAFLSFRGEDTRKRFI-GHLYTALNNKGIYVFRDDKQLEKGGSISPNLLKTIEESRISIIVLSKNYASSTWC   85 (160)
Q Consensus         7 s~~~~~~yDVFISy~~~D~~~~fv-~~L~~~L~~~g~~v~~d~~dl~~G~~~~~~i~~~i~~S~~~I~vlS~~~~~S~wc   85 (160)
                      ....+++|||||||+++|.  .|| +.|.+.|+++|+++|+|++|+.+|+.+.++|.++|++|+++|+|+|++|+.|.||
T Consensus         6 ~~~~~~~yDvFisys~~D~--~~v~~~L~~~Le~~g~~v~~d~~d~~~G~~~~~~i~~~i~~s~~~i~vlS~~~~~s~w~   83 (161)
T d1fyva_           6 ELQRNLQFHAFISYSGHDS--FWVKNELLPNLEKEGMQICLHERNFVPGKSIVENIITCIEKSYKSIFVLSPNFVQSEWC   83 (161)
T ss_dssp             TSSSCCCEEEEEECCGGGH--HHHHHTHHHHHHTTTCCEECTTTTCCTTSCHHHHHHHHHHHEEEEEEEESHHHHHHTSH
T ss_pred             HcCCCCeeEEEEecChhHH--HHHHHHHHHHHHhCCCcceEeccccccccccHHHHHHHHHhCCEEEEEecCccccChHH
Confidence            4456889999999999995  566 5699999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH--hhcCCcceeEEeecCchh
Q 031401           86 LDELLKIVEC--KNREDQIFPIFYEVEPTV  113 (160)
Q Consensus        86 ~~El~~~~~~--~~~~~~IiPI~~~~~p~~  113 (160)
                      ..|+..|+++  .....++|||+++..|..
T Consensus        84 ~~E~~~a~~~~~~~~~~~lIpV~l~~~~~~  113 (161)
T d1fyva_          84 HYELYFAHHNLFHEGSNSLILILLEPIPQY  113 (161)
T ss_dssp             HHHHHTTSCCCSCSSCSSEEEEESSCCCGG
T ss_pred             HHHHHHHHHHHHHcCCCceeEEEEecCchh
Confidence            9999999987  556779999999865544

>d1fyxa_ c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 2, TLR2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=3.4e-26  Score=164.22  Aligned_cols=102  Identities=25%  Similarity=0.366  Sum_probs=91.5

Q ss_pred             CCCcccEEEecccCCCchhHH-HHHHHHHHcC--CceEEeeCCCCCCCCCchHHHHHHHHhcceEEEEeecCCcCChhHH
Q 031401           10 SHGEYDAFLSFRGEDTRKRFI-GHLYTALNNK--GIYVFRDDKQLEKGGSISPNLLKTIEESRISIIVLSKNYASSTWCL   86 (160)
Q Consensus        10 ~~~~yDVFISy~~~D~~~~fv-~~L~~~L~~~--g~~v~~d~~dl~~G~~~~~~i~~~i~~S~~~I~vlS~~~~~S~wc~   86 (160)
                      .++.|||||||+++|.  .|| +.|.+.|++.  |+++|+|++|+.+|+.+.++|.++|++|+++|+|+||+|+.|.||.
T Consensus         2 ~~~~YDvFiSys~~D~--~~V~~~l~~~LE~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~S~~~i~vlS~~~l~s~wc~   79 (149)
T d1fyxa_           2 RNICYDAFVSYSERDA--YWVENLMVQELENFNPPFKLCLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWCK   79 (149)
T ss_dssp             CSCCEEEEEECCGGGH--HHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHH
T ss_pred             CCCEEEEEEECchhhH--HHHHHHHHHHHHhcCCCceEEEecccccccchHHHHHHHHHHhCCEEEEEEcCccccccchH
Confidence            5789999999999995  556 5699999874  9999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHH--hhcCCcceeEEeecCchh
Q 031401           87 DELLKIVEC--KNREDQIFPIFYEVEPTV  113 (160)
Q Consensus        87 ~El~~~~~~--~~~~~~IiPI~~~~~p~~  113 (160)
                      .|+..|+++  +..+.+||||+++..+..
T Consensus        80 ~E~~~a~~~~~~~~~~~iIpV~l~~~~~~  108 (149)
T d1fyxa_          80 YELDFSHFRLFDENNDAAILILLEPIEKK  108 (149)
T ss_dssp             HHSCCSCCTTCGGGTTCCEEEESSCCCTT
T ss_pred             HHHHHHHHHHHHcCCceEEEEEeccCchh
Confidence            999998877  667889999999755443

>d2f62a1 c.23.14.1 (A:9-160) Nucleoside 2-deoxyribosyltransferase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: N-(deoxy)ribosyltransferase-like
family: N-deoxyribosyltransferase
domain: Nucleoside 2-deoxyribosyltransferase
species: Trypanosoma brucei [TaxId: 5691]

Probab=92.48  E-value=0.6  Score=31.35  Aligned_cols=69  Identities=10%  Similarity=0.049  Sum_probs=48.9

Q ss_pred             hhHHHHHHHHHHcCCceEEeeCCC-CCCCCCchHHHHHHHHhcceEEEEeec--CCcCChhHHHHHHHHHHH
Q 031401           27 KRFIGHLYTALNNKGIYVFRDDKQ-LEKGGSISPNLLKTIEESRISIIVLSK--NYASSTWCLDELLKIVEC   95 (160)
Q Consensus        27 ~~fv~~L~~~L~~~g~~v~~d~~d-l~~G~~~~~~i~~~i~~S~~~I~vlS~--~~~~S~wc~~El~~~~~~   95 (160)
                      ..+...+...|+..|+.++.=.++ ......+.+.-.+.|++|+.+|.++++  .-..+.-+.+|+..|...
T Consensus        18 ~~~~~~i~~~l~~~g~~~~~P~d~~~~~~~~If~~d~~~i~~~D~VIA~Ld~frg~~~D~GTa~EiG~A~al   89 (152)
T d2f62a1          18 ASYYNKVRELLKKENVMPLIPTDNEATEALDIRQKNIQMIKDCDAVIADLSPFRGHEPDCGTAFEVGCAAAL   89 (152)
T ss_dssp             HHHHHHHHHHHHTTTCEEECTTTTCCSSHHHHHHHHHHHHHHCSEEEEECCCCSSSSCCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHCCCEEeccccccchhHHHHHHHHHHHHHhCCEEEEEccccCCCCCCchHHHHHHHHHHC
Confidence            456788999999999999863211 111122444455789999999999985  334567899999998883

>d1wu7a1 c.51.1.1 (A:330-426) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Anticodon-binding domain of Class II aaRS
domain: Histidyl-tRNA synthetase (HisRS), C-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=92.46  E-value=0.28  Score=30.12  Aligned_cols=61  Identities=10%  Similarity=0.126  Sum_probs=44.9

Q ss_pred             CcccEEEecccCCCchhHHHHHHHHHHcCCceEEeeCCCCCCCCCchHHHHHHHHhcceEEEEeec
Q 031401           12 GEYDAFLSFRGEDTRKRFIGHLYTALNNKGIYVFRDDKQLEKGGSISPNLLKTIEESRISIIVLSK   77 (160)
Q Consensus        12 ~~yDVFISy~~~D~~~~fv~~L~~~L~~~g~~v~~d~~dl~~G~~~~~~i~~~i~~S~~~I~vlS~   77 (160)
                      ...+|||..-++... .++..|...|.+.|+++-+|..    +..+...+..|-..--..++|+.+
T Consensus         2 ~~~~V~i~~~g~~~~-~~~~~l~~~Lr~~gi~v~~d~~----~~~l~kq~~~A~~~~~~~~iiiG~   62 (97)
T d1wu7a1           2 EKKSVYICRVGKINS-SIMNEYSRKLRERGMNVTVEIM----ERGLSAQLKYASAIGADFAVIFGE   62 (97)
T ss_dssp             SSCEEEEEEESSCCH-HHHHHHHHHHHTTTCEEEECCS----CCCHHHHHHHHHHTTCSEEEEEEH
T ss_pred             CCceEEEEEeCHHHH-HHHHHHHHHHHHCCCEEEEECC----CCcHHHHHHHHHhcCCCeEEecCC
Confidence            457899998887764 6789999999999999999863    345666777765544445555554

>d1kmma1 c.51.1.1 (A:326-424) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Anticodon-binding domain of Class II aaRS
domain: Histidyl-tRNA synthetase (HisRS), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=82.42  E-value=2  Score=25.94  Aligned_cols=60  Identities=20%  Similarity=0.294  Sum_probs=41.2

Q ss_pred             CcccEEEecccCCCchhHHHHHHHHHHcC--CceEEeeCCCCCCCCCchHHHHHHHHhcceEEEEee
Q 031401           12 GEYDAFLSFRGEDTRKRFIGHLYTALNNK--GIYVFRDDKQLEKGGSISPNLLKTIEESRISIIVLS   76 (160)
Q Consensus        12 ~~yDVFISy~~~D~~~~fv~~L~~~L~~~--g~~v~~d~~dl~~G~~~~~~i~~~i~~S~~~I~vlS   76 (160)
                      +..||||..-+++. ...+..|...|++.  |+++-+|..    +..+...+..|-..--..++|+-
T Consensus         2 p~vdv~vi~~~~~~-~~~a~~la~~LR~~~~gi~v~~~~~----~~~l~kq~k~A~~~~~~~~iiiG   63 (99)
T d1kmma1           2 PVVDIYLVASGADT-QSAAMALAERLRDELPGVKLMTNHG----GGNFKKQFARADKWGARVAVVLG   63 (99)
T ss_dssp             CSCSEEEECCSTTH-HHHHHHHHHHHHHHSTTCCEEECCS----CCCHHHHHHHHHHHTCSEEEECC
T ss_pred             CCCEEEEEECCHHH-HHHHHHHHHHHHhcCCCeEEEEeCC----CCCHHHHHHHHHHhCCChhhhcC
Confidence            45799998876654 45678899999876  999998863    34566677776554444444443