Citrus Sinensis ID: 031417

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160
Protein Sequence
MFHIITMYADYKNMKEAEKDVTSPRCWFLPTYYSQAALADWSSLNFAQAAGFRDRYMGRLDTCEKLASLDFVLRQEARALFGNRFSFFNFQICCQAGVPQQPNGFDCGYYVMKYMDNLSIVVHDSYQHDSDHARLLLALYLVQSPLNKIRRRLIQEARKL
Secondary Structure (PSIPRED)
ccEEEEEEcccccHHHHHHHcccccEEccHHHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEcccccccccccccHHEEEEHHccccccccccccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccEEEEEEEcHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHcccHHccccccHHHHHHHHHHHHHHHHHHHccccEEEEEEEEEcccccccccccccHHHHHEEEcccccEEEccccccccHHHHHHHHHHHHHccHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MFHIITMYAdyknmkeaekdvtsprcwflptyysqaaLADWSSLNFAQAAGFRDRYMGRLDTCEKLASLDFVLRQEARALFGNRFSFFNFQIccqagvpqqpngfdcGYYVMKYMDNLSIVvhdsyqhdsDHARLLLALYLVQSPLNKIRRRLIQEARKL
Flexible Loop (DISEMBL)
mfhiitmyadyknmkeaekDVTSPRCWFLPTYYSQAALADWSSLNFAQAAGFRDRYMGRLDTCEKLASLDFVLRQEARALFGNRFSFFNFQICCQAGVPQQPNGFDCGYYVMKYMDNLSIVVHDSYQHDSDHARLLLALYlvqsplnkIRRRLIQEARKL
Low Complexity Region (SEG)
MFHIITMYADYKNMKEAEKDVTSPRCWFLPTYYSQAALADWSSLNFAQAAGFRDRYMGRLDTCEKLASLDFVLRQEARALFGNRFSFFNFQICCQAGVPQQPNGFDCGYYVMKYMDNLSIVVHDSYQHDSDHARLLLALYLVQSPLNKIRRRLIQEARKL
Disordered region (IsUnstruct)
**HIITMYADYKNMKEAEKDVTSPRCWFLPTYYSQAALADWSSLNFAQAAGFRDRYMGRLDTCEKLASLDFVLRQEARALFGNRFSFFNFQICCQAGVPQQPNGFDCGYYVMKYMDNLSIVVHDSYQHDSDHARLLLALYLVQSPLNKIRR*********
Disordered Region (DISOPRED)
*FHIITMYADYKNMKE***DVTSPRCWFLPTYYSQAALADWSSLNFAQAAGFRDRYMGRLDTCEKLASLDFVLRQEARALFGNRFSFFNFQICCQAGVPQQPNGFDCGYYVMKYMDNLSIVVHDSYQHDSDHARLLLALYLVQSPLNKIRRRLI******
Disordered Region (DISEMBL)
MFHIITMYADYKNMKEAEKDVTSPRCWFLPTYYSQAALADWSSLNFAQAAGFRDRYMGRLDTCEKLASLDFVLRQEARALFGNRFSFFNFQICCQAGVPQQPNGFDCGYYVMKYMDNLSIVVHDSYQHDSDHARLLLALYLVQSPLNKIRRRLIQEARKL
Disordered Region (DISPRO)
MFHIITMYADYKNMKEAEKDVTSPRCWFLPTYYSQAALADWSSLNFAQAAGFRDRYMGRLDTCEKLASLDFVLRQEARALFGNRFSFFNFQICCQAGVPQQPNGFDCGYYVMKYMDNLSIVVHDSYQHDSDHARLLLALYLVQSPLNKIRRRLIQEARKL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MFHIITMYADYKNMKEAEKDVTSPRCWFLPTYYSQAALADWSSLNFAQAAGFRDRYMGRLDTCEKLASLDFVLRQEARALFGNRFSFFNFQICCQAGVPQQPNGFDCGYYVMKYMDNLSIVVHDSYQHDSDHARLLLALYLVQSPLNKIRRRLIQEARKL
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	160
224132816	191	predicted protein [Populus trichocarpa]	0.581	0.486	0.333	2e-06
224115366	191	predicted protein [Populus trichocarpa]	0.581	0.486	0.333	2e-06

>gi|224132816|ref|XP_002327887.1| predicted protein [Populus trichocarpa] gi|222837296|gb|EEE75675.1| predicted protein [Populus trichocarpa]

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 47/93 (50%)

Query: 66  LASLDFVLRQEARALFGNRFSFFNFQICCQAGVPQQPNGFDCGYYVMKYMDNLSIVVHDS 125
           LA LD +   + +  + + +SF +F +     VPQQ NG+DCG YV+K+M          
Sbjct: 62  LAILDILFEDDIQQNYPDGWSFASFSVDRSPNVPQQTNGYDCGVYVIKFMLAPEEATQPD 121

Query: 126 YQHDSDHARLLLALYLVQSPLNKIRRRLIQEAR 158
           +  DSD  RL + L L+   +N  R  L  +A 
Sbjct: 122 FVFDSDTERLDVVLRLLDGNVNSCRNELAAKAE 154

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224115366|ref|XP_002332178.1| predicted protein [Populus trichocarpa] gi|222832426|gb|EEE70903.1| predicted protein [Populus trichocarpa]

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 47/93 (50%)

Query: 66  LASLDFVLRQEARALFGNRFSFFNFQICCQAGVPQQPNGFDCGYYVMKYMDNLSIVVHDS 125
           LA LD +   + +  + + +SF +F +     VPQQ NG+DCG YV+K+M          
Sbjct: 62  LAILDILFEDDIQQNYPDGWSFASFSVDRSPNVPQQTNGYDCGVYVIKFMLAPEEATQPD 121

Query: 126 YQHDSDHARLLLALYLVQSPLNKIRRRLIQEAR 158
           +  DSD  RL + L L+   +N  R  L  +A 
Sbjct: 122 FVFDSDTERLDVVLRLLDGNVNSCRNELAAKAE 154

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

No hits with e-value below 0.001 by BLAST

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

No confident hit detected by STRING

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	160
pfam02902	216	pfam02902, Peptidase_C48, Ulp1 protease family, C-	7e-05

>gnl|CDD|217278 pfam02902, Peptidase_C48, Ulp1 protease family, C-terminal catalytic domain

 Score = 40.9 bits (96), Expect = 7e-05
 Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 73  LRQEARALFGNRFSFFNFQICCQAGVPQQPNGFDCGYYVMKYMDNLSI-VVHDSYQHDSD 131
           L  EA     +      F+I     VPQQPN  DCG YV+K+++ L+  V  +    D D
Sbjct: 137 LMSEALKKEQDDPDLTPFEIKRLTKVPQQPNSGDCGPYVLKFIELLAEGVPFEFLTADKD 196

This domain contains the catalytic triad Cys-His-Asn. Length = 216

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	160
PLN03189	490	Protease specific for SMALL UBIQUITIN-RELATED MODI	99.92
KOG0778	511	consensus Protease, Ulp1 family [Posttranslational	99.9
KOG3246	223	consensus Sentrin-specific cysteine protease (Ulp1	99.83
PF02902	216	Peptidase_C48: Ulp1 protease family, C-terminal ca	99.72
COG5160	578	ULP1 Protease, Ulp1 family [Posttranslational modi	99.7
KOG0779	595	consensus Protease, Ulp1 family [Posttranslational	96.12

>PLN03189 Protease specific for SMALL UBIQUITIN-RELATED MODIFIER (SUMO); Provisional

Probab=99.92  E-value=2e-25  Score=203.31  Aligned_cols=131  Identities=21%  Similarity=0.246  Sum_probs=107.6

Q ss_pred             CchhHHhhc------cCCCCCceEEeecccccccchhhhhHHHHhHhhhhhhccCCCcchHHHHHHHHHHHHHHHhhcCC
Q 031417           10 DYKNMKEAE------KDVTSPRCWFLPTYYSQAALADWSSLNFAQAAGFRDRYMGRLDTCEKLASLDFVLRQEARALFGN   83 (160)
Q Consensus        10 ~~~~~~~a~------~d~~~~~~~flpin~~~~~~~~~~~~~~~~~~~~~d~~~g~~d~~~~l~iL~~yl~~E~~~k~~~   83 (160)
                      +|.++|+-.      .++.+.+.||+|||.+ .||+.-++.+..+.+.|+||+.|....+  ++.|..|+.+|++++.+.
T Consensus       349 gY~~VrRWTk~kKigv~Lfs~D~IFIPIh~n-~HWsLaVId~k~k~I~yyDSLgg~~~~v--L~~L~rYL~~E~kdK~g~  425 (490)
T PLN03189        349 DYKAVRRWTTQKKLGYHLIDCDKIFVPIHQE-IHWTLAVINKKDQKFQYLDSLKGRDPKI--LDALAKYYVDEVKDKSEK  425 (490)
T ss_pred             ChHHHHHHhhhcccccccccCceEEeeeecC-CeeEEEEEEcCCCeEEEEeCCCCCCHHH--HHHHHHHHHHHHhhhcCC
Confidence            456666433      3677889999999974 3555555566778899999999988876  789999999999999999


Q ss_pred             CcccccceeeccCCCCCCCCCCCchHHHHHHHHHHhhhhcCCCccCchH---HHHHHHHHHhhcc
Q 031417           84 RFSFFNFQICCQAGVPQQPNGFDCGYYVMKYMDNLSIVVHDSYQHDSDH---ARLLLALYLVQSP  145 (160)
Q Consensus        84 ~~d~~~w~~~~~~~~PqQ~Ng~DCGVfV~~~~~~i~~~~~~~~~F~q~~---~R~~mv~eiv~~~  145 (160)
                      ++++++|......++|||.||+|||||||+||++++  ++.+++|+|.|   +|++|++||++..
T Consensus       426 d~D~s~W~~~~~~~vPQQ~NG~DCGVFVL~yAE~~S--rG~~LtFSQeDMp~fRrRma~EIl~~r  488 (490)
T PLN03189        426 DIDVSSWEQEFVEDLPEQKNGYDCGMFMIKYIDFYS--RGLGLCFGQEHMPYFRLRTAKEILRLK  488 (490)
T ss_pred             CcchhcceeccCCCCCCCCCCCCHHHHHHHHHHHHc--CCCCCCcChhhhHHHHHHHHHHHHHhh
Confidence            999999998767889999999999999999999885  56789999876   5777777777543

>KOG0778 consensus Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=3.5e-25  Score=202.66  Aligned_cols=122  Identities=21%  Similarity=0.246  Sum_probs=107.9

Q ss_pred             ccCCCCCceEEeecccccccchhhhhHHHHhHhhhhhhccCCCcchHHHHHHHHHHHHHHHhhcCCCcccccceeeccCC
Q 031417           18 EKDVTSPRCWFLPTYYSQAALADWSSLNFAQAAGFRDRYMGRLDTCEKLASLDFVLRQEARALFGNRFSFFNFQICCQAG   97 (160)
Q Consensus        18 ~~d~~~~~~~flpin~~~~~~~~~~~~~~~~~~~~~d~~~g~~d~~~~l~iL~~yl~~E~~~k~~~~~d~~~w~~~~~~~   97 (160)
                      .+|.-+.+-||+||.. .-||+.-++.+-.+.+.|+||+.|..+..  ..+|..||.+|+.+|.+.++|+++|.++...+
T Consensus       384 ~v~if~~d~i~vPIH~-~vHW~l~vid~r~k~i~y~DS~~~~~nr~--~~aL~~Yl~~E~~~k~~~~~d~s~w~~~~~~~  460 (511)
T KOG0778|consen  384 KVDIFDKDIIFVPIHL-GVHWCLAVIDLREKTIEYYDSLGGGPNRI--CDALAKYLQDESRDKSKKDFDVSGWTIEFVQN  460 (511)
T ss_pred             ccCccccceeEeeeec-CceEEEEEEEcccceEEEeeccCCCCcch--HHHHHHHHHHHHhhhhcCCCCccchhhhhhhc
Confidence            3788888999999999 66899999999999999999999887775  58999999999999999999999999999899


Q ss_pred             CCCCCCCCCchHHHHHHHHHHhhhhcCCCccCchH---HHHHHHHHHhhc
Q 031417           98 VPQQPNGFDCGYYVMKYMDNLSIVVHDSYQHDSDH---ARLLLALYLVQS  144 (160)
Q Consensus        98 ~PqQ~Ng~DCGVfV~~~~~~i~~~~~~~~~F~q~~---~R~~mv~eiv~~  144 (160)
                      +|||.||+|||||||+|+++++  ++.|++|+|.+   ||++|++||+++
T Consensus       461 iP~Q~Ng~DCG~f~c~~~~~~s--~~~p~~ftq~dmp~fR~~m~~eI~~~  508 (511)
T KOG0778|consen  461 IPQQRNGSDCGMFVCKYADYIS--RDVPLTFTQQDMPYFRKKMAKEILHL  508 (511)
T ss_pred             cccccCCCccceEEeeechhhc--cCCCcccChhhhHHHHHHHHHHHHhh
Confidence            9999999999999999999885  78899999665   466666666644

>KOG3246 consensus Sentrin-specific cysteine protease (Ulp1 family) [General function prediction only]

Probab=99.83  E-value=2.9e-21  Score=161.64  Aligned_cols=135  Identities=22%  Similarity=0.304  Sum_probs=92.6

Q ss_pred             cCchhHHhhc-c-CCCCCceEEeecccccc-----cchhhhhHHHHhHhhhhhhc--cCCCcchHHHHHHHHHHHHHHHh
Q 031417            9 ADYKNMKEAE-K-DVTSPRCWFLPTYYSQA-----ALADWSSLNFAQAAGFRDRY--MGRLDTCEKLASLDFVLRQEARA   79 (160)
Q Consensus         9 ~~~~~~~~a~-~-d~~~~~~~flpin~~~~-----~~~~~~~~~~~~~~~~~d~~--~g~~d~~~~l~iL~~yl~~E~~~   79 (160)
                      +|+..++.++ | |+.+-+.||+||||++.     +|+|||||-+++.++=..||  .+.+++....+     +-+..++
T Consensus        71 ~~~~e~~~~~~pl~l~~k~~iflpiNDn~~~~~~~GGsHWSLLV~sr~~~~f~hyDS~~n~nt~~a~~-----l~~kl~~  145 (223)
T KOG3246|consen   71 PNPEEIAMVLDPLDLNDKDFIFLPINDNSNVTRASGGSHWSLLVFSRPDGKFYHYDSLSNGNTKDAKS-----LMKKLRA  145 (223)
T ss_pred             CCcHHHHHhcChhhcCCCceEEEEecCCCcccccCCCcceEEEEEEeeCCcEEEeecccCCCcHHHHH-----HHHHHHH
Confidence            5555555544 5 78999999999999974     48999999999988755555  33333332211     2233334


Q ss_pred             hcCCCcccccceeeccCCCCCCCCCCCchHHHHHHHHHHhhhhcCCCccCchHHHHHHHHHHhhccHHHHHHHHHHHHHh
Q 031417           80 LFGNRFSFFNFQICCQAGVPQQPNGFDCGYYVMKYMDNLSIVVHDSYQHDSDHARLLLALYLVQSPLNKIRRRLIQEARK  159 (160)
Q Consensus        80 k~~~~~d~~~w~~~~~~~~PqQ~Ng~DCGVfV~~~~~~i~~~~~~~~~F~q~~~R~~mv~eiv~~~v~~mR~~~l~~i~~  159 (160)
                      ..++.+..     ..+..||||.||||||+|||++++.|+......-.-+       -++.++..-++++|+++..+|.+
T Consensus       146 ll~~~~~~-----~~~~~~~qQqNgyDCG~hV~~~t~~l~~~~~~~~~~~-------~~~~~~~~~i~~lr~~l~~LI~s  213 (223)
T KOG3246|consen  146 LLKKKFAK-----RVECKCLQQQNGYDCGLHVCCNTRVLAERLLRCPYAT-------SSQLLVVDLIKALREELLDLIQS  213 (223)
T ss_pred             HHhhhhhh-----cccccChhhhcCCchhHHHHHHHHHHHHHHhcccccc-------ccchhhHHHHHHHHHHHHHHHHH
Confidence            44444431     1257899999999999999999999987642211100       23556678899999999999976


Q ss_pred             C
Q 031417          160 L  160 (160)
Q Consensus       160 ~  160 (160)
                      |
T Consensus       214 l  214 (223)
T KOG3246|consen  214 L  214 (223)
T ss_pred             h
Confidence            4

>PF02902 Peptidase_C48: Ulp1 protease family, C-terminal catalytic domain This family belongs to family C48 of the peptidase classification

Probab=99.72  E-value=1e-17  Score=130.55  Aligned_cols=125  Identities=23%  Similarity=0.354  Sum_probs=87.3

Q ss_pred             ccCCCCCceEEeecccccccchhhhhH---HHHhHhhhhhhccCCCc---chHHHHHHHHHHHHHHHhhcCCCcccccce
Q 031417           18 EKDVTSPRCWFLPTYYSQAALADWSSL---NFAQAAGFRDRYMGRLD---TCEKLASLDFVLRQEARALFGNRFSFFNFQ   91 (160)
Q Consensus        18 ~~d~~~~~~~flpin~~~~~~~~~~~~---~~~~~~~~~d~~~g~~d---~~~~l~iL~~yl~~E~~~k~~~~~d~~~w~   91 (160)
                      ..++...+.||+|||.+   +.||+++   +....+-++||+.+...   ....+..+..++..+..+.....++...|.
T Consensus        77 ~~~l~~~~~i~iPin~~---~~HW~l~vi~~~~~~i~~~DSl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  153 (216)
T PF02902_consen   77 KKNLFDKDYIFIPININ---NNHWVLLVIDLPKKRIYVYDSLGSSNNDKRYKRVIENIIPFLKREYKKKEGRDPDKSPFK  153 (216)
T ss_dssp             TSTGGGSSEEEEEEEET---TTEEEEEEEETTTTEEEEE-TTSTSSH-HHHHHHHHHHHHHHHHHHHHHHSSCT-TTTCE
T ss_pred             cccccccCEEEEEEech---hhccceeEEcccccEEEEEeccccccccccchhhhhhhhhhhhhccccccccccccceee
Confidence            34778889999999977   6677665   45667889999988777   112246777788888877777776777787


Q ss_pred             eeccCCCCCCCCCCCchHHHHHHHHHHhhhhcCCCccCchHHHHHHHHHHhhccHHHHHHHHHHH
Q 031417           92 ICCQAGVPQQPNGFDCGYYVMKYMDNLSIVVHDSYQHDSDHARLLLALYLVQSPLNKIRRRLIQE  156 (160)
Q Consensus        92 ~~~~~~~PqQ~Ng~DCGVfV~~~~~~i~~~~~~~~~F~q~~~R~~mv~eiv~~~v~~mR~~~l~~  156 (160)
                      .....++|||.||+|||||||+||+.++.+...  .+.+.         +.+..+..+|.++..+
T Consensus       154 ~~~~~~~pqQ~n~~dCGv~vl~~~~~~~~~~~~--~~~~~---------l~~~~i~~~r~~~a~~  207 (216)
T PF02902_consen  154 IVRPPNVPQQPNGYDCGVYVLKFMECLLEGPSF--DFSQE---------LTEEDIKNFRKKLAVD  207 (216)
T ss_dssp             EEEECTS-SSSSSSCHHHHHHHHHHHHHCTHHS--TGCCS---------BTGHHHHHHHHHHHH-
T ss_pred             ecccccccCCCCCCCcHHHHHHHHHHHHhCCCC--ccccc---------CCHHHHHHHHHHHHhh
Confidence            767789999999999999999999998765432  21110         2255566666666544

; InterPro: IPR003653 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins contain cysteine peptidases belonging to MEROPS peptidase family C48 (Ulp1 endopeptidase family, clan CE). The protein fold of the peptidase domain for members of this family resembles that of adenain, the type example for clan CE. This group of sequences also contains a number of hypothetical proteins, which have not yet been characterised, and non-peptidase homologues. These are proteins that have either been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of the peptidases in the family. The Ulp1 endopeptidase family contain the deubiquitinating enzymes (DUB) that can de-conjugate ubiquitin or ubiquitin-like proteins from ubiquitin-conjugated proteins. They can be classified in 3 families according to sequence homology [, ]: Ubiquitin carboxyl-terminal hydrolase (UCH) (see PDOC00127 from PROSITEDOC), Ubiquitin-specific processing protease (UBP) (see PDOC00750 from PROSITEDOC), and ubiquitin-like protease (ULP) specific for de-conjugating ubiquitin-like proteins. In contrast to the UBP pathway, which is very redundant (16 UBP enzymes in yeast), there are few ubiquitin-like proteases (only one in yeast, Ulp1). Ulp1 catalyses two critical functions in the SUMO/Smt3 pathway via its cysteine protease activity. Ulp1 processes the Smt3 C-terminal sequence (-GGATY) to its mature form (-GG), and it de-conjugates Smt3 from the lysine epsilon-amino group of the target protein []. Crystal structure of yeast Ulp1 bound to Smt3 [] revealed that the catalytic and interaction interface is situated in a shallow and narrow cleft where conserved residues recognise the Gly-Gly motif at the C-terminal extremity of Smt3 protein. Ulp1 adopts a novel architecture despite some structural similarity with other cysteine protease. The secondary structure is composed of seven alpha helices and seven beta strands. The catalytic domain includes the central alpha helix, beta-strands 4 to 6, and the catalytic triad (Cys-His-Asp). This profile is directed against the C-terminal part of ULP proteins that displays full proteolytic activity [].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 1EUV_A 2HL8_A 2HKP_A 2HL9_A 1XT9_A 2BKQ_C 2BKR_A 2IO1_E 1TH0_B 1TGZ_A ....

>COG5160 ULP1 Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]

Probab=99.70  E-value=2.7e-18  Score=158.09  Aligned_cols=121  Identities=21%  Similarity=0.196  Sum_probs=95.9

Q ss_pred             ccCCCCCceEEeecccccccchhhhhHHHHhHhhhhhhccCCCcchHHHHHHHHHHHHHHHhhcC-CCcccccceeeccC
Q 031417           18 EKDVTSPRCWFLPTYYSQAALADWSSLNFAQAAGFRDRYMGRLDTCEKLASLDFVLRQEARALFG-NRFSFFNFQICCQA   96 (160)
Q Consensus        18 ~~d~~~~~~~flpin~~~~~~~~~~~~~~~~~~~~~d~~~g~~d~~~~l~iL~~yl~~E~~~k~~-~~~d~~~w~~~~~~   96 (160)
                      ..|.-+.++||+|||. +.||..-.+.+-..++.|+||+.+..+..  +.-|+.|+.+|.+.-.+ ++|     ....+.
T Consensus       447 k~dif~~k~I~iPIni-~~HW~l~II~~~~~~i~~~DSLan~~~~v--~~~L~~Y~ldE~k~~~~k~~~-----~~~~~~  518 (578)
T COG5160         447 KTDIFSKKYIFIPINI-SYHWFLAIIDNPKKNILYFDSLANTHDPV--LEFLRSYLLDEYKIQHDKDPQ-----IKMKHC  518 (578)
T ss_pred             ccCccccceEEEEecc-cceEEEEEeecCcceeEEecccccCcHHH--HHHHHHHHHHHHhcccCCchh-----hhhhcC
Confidence            5678888999999999 67999999999999999999999888775  78899999999886544 333     122468


Q ss_pred             CCCCCCCCCCchHHHHHHHHHHhhhhcCCCccCchH---HHHHHHHHHhhccHHH
Q 031417           97 GVPQQPNGFDCGYYVMKYMDNLSIVVHDSYQHDSDH---ARLLLALYLVQSPLNK  148 (160)
Q Consensus        97 ~~PqQ~Ng~DCGVfV~~~~~~i~~~~~~~~~F~q~~---~R~~mv~eiv~~~v~~  148 (160)
                      +||||.||+|||||||+++++.+  .+.|..|++++   +|+.|+-+|....+++
T Consensus       519 ~vPqQ~Ng~DCGV~vc~~~~~~~--~~~p~~f~~nd~~r~Rk~m~h~i~~~qi~y  571 (578)
T COG5160         519 KVPQQRNGSDCGVFVCMFIRYFL--ENPPEQFSKNDRPRARKNMAHTIKDLQINY  571 (578)
T ss_pred             CCCCCCCCCccceEEEEeeeecc--cCChhhcCccchHHHHHHHHHHHHHHHHHH
Confidence            89999999999999998888664  56688888654   5666666666554443

>KOG0779 consensus Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]

Probab=96.12  E-value=0.0039  Score=59.00  Aligned_cols=137  Identities=13%  Similarity=0.144  Sum_probs=67.3

Q ss_pred             hccCCCCCceEEeecccccccchhhhhHHHHhHhhhhhhc--------cCCCcchHHHHHHHHHHHHHHHhhcCC----C
Q 031417           17 AEKDVTSPRCWFLPTYYSQAALADWSSLNFAQAAGFRDRY--------MGRLDTCEKLASLDFVLRQEARALFGN----R   84 (160)
Q Consensus        17 a~~d~~~~~~~flpin~~~~~~~~~~~~~~~~~~~~~d~~--------~g~~d~~~~l~iL~~yl~~E~~~k~~~----~   84 (160)
                      +.+|...-.+||+|+|-    .+||++--++....---++        .+-.+.+.........++.+.......    +
T Consensus       431 ~~~d~~~k~yi~~P~~E----~~hw~laiic~p~~e~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  506 (595)
T KOG0779|consen  431 RHFDLFNKDYVFVPTHE----RFHWKLAIICNPDLETETPRPRLELLILKLSADFPIVENILDFMKVASIYNNELIVTED  506 (595)
T ss_pred             eccccccceeEEecCch----HhhhhccccccCccccCccccchhhhhhccccccchhhhhhhhhhhcccccCccccccc
Confidence            56788999999999984    6788765443332222111        222222222222222233222221111    0


Q ss_pred             cccccceee--------ccCCCCCCCCCCCchHHHHHHHHHHhhhhcCCCccCchHHHHHHHHHHhhccHHHHHHHHHHH
Q 031417           85 FSFFNFQIC--------CQAGVPQQPNGFDCGYYVMKYMDNLSIVVHDSYQHDSDHARLLLALYLVQSPLNKIRRRLIQE  156 (160)
Q Consensus        85 ~d~~~w~~~--------~~~~~PqQ~Ng~DCGVfV~~~~~~i~~~~~~~~~F~q~~~R~~mv~eiv~~~v~~mR~~~l~~  156 (160)
                      .. ..|++.        ...--|||.|.+|||+|+..|++......+  .++.-.+.=..-+..+.+....++|.++=.+
T Consensus       507 ~~-~~~~~~~~~~~~~s~~v~~p~q~n~~dcG~~~~~~v~~f~e~~~--e~~~~~~~~~~~l~~~~~~~~~~~r~~~r~~  583 (595)
T KOG0779|consen  507 LE-LEEELPRRLPRGKSETVREPQQNNDVDCGSFVLEFVERFIEDAP--ERFNIEDEGTINLEWFPPKEILKFRDEIRNL  583 (595)
T ss_pred             cc-ccccccccCcccccccccccCccCcccchhhHHHHHHHhhhChh--hhcccccccccccccCCchHHhhhhhhhhcc
Confidence            00 012221        011128999999999999999996654332  2211000000000023466677777777666


Q ss_pred             HHhC
Q 031417          157 ARKL  160 (160)
Q Consensus       157 i~~~  160 (160)
                      +|+|
T Consensus       584 ~~~l  587 (595)
T KOG0779|consen  584 GRKL  587 (595)
T ss_pred             cccc
Confidence            6654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	160
2xph_A	238	Sentrin-specific protease 1; hydrolase, cysteine p	5e-06
1euv_A	221	ULP1 protease; SUMO hydrolase, ubiquitin-like prot	7e-06
2oix_A	186	Xanthomonas outer protein D; CLAN CE family 48 cys	1e-05
3eay_A	323	Sentrin-specific protease 7; ULP, SENP, SUMO, ubiq	2e-05
2bkr_A	212	Sentrin-specific protease 8; protein-binding-hydro	4e-05
1th0_A	226	SMT3-, sentrin-specific protease 2; SUMO, AXAM, SE	8e-05

>2xph_A Sentrin-specific protease 1; hydrolase, cysteine protease, thiol protease; 2.40A {Homo sapiens} PDB: 2xre_A 2iyc_A 2iyd_A 2iy1_A 2iy0_A 2ckg_A 2ckh_A 2g4d_A Length = 238

 Score = 43.6 bits (102), Expect = 5e-06
 Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 3/77 (3%)

Query: 73  LRQEARALFGNRFSFFNFQICC--QAGVPQQPNGFDCGYYVMKYMDNLSIVVHDSY-QHD 129
           L+QE+       F    +Q+       +PQQ NG DCG +  KY D ++     ++ Q  
Sbjct: 161 LKQESIDKKRKEFDTNGWQLFSKKSQEIPQQMNGSDCGMFACKYADCITKDRPINFTQQH 220

Query: 130 SDHARLLLALYLVQSPL 146
             + R  +   ++   L
Sbjct: 221 MPYFRKRMVWEILHRKL 237

>1euv_A ULP1 protease; SUMO hydrolase, ubiquitin-like protease 1, SMT3 hydrolase desumoylating enzyme, cysteine protease; 1.60A {Saccharomyces cerevisiae} SCOP: d.3.1.7 PDB: 2hkp_A 2hl8_A 2hl9_A Length = 221

 Score = 43.2 bits (101), Expect = 7e-06
 Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 7/75 (9%)

Query: 73  LRQEARALFGNRFSFFNFQICCQAGVPQQPNGFDCGYYVMKYMDNLSIVVHDSY-QHDSD 131
           + +E++   G  F   +         PQQPNG+DCG YV       S      +   D+ 
Sbjct: 152 VMEESKHTIGEDFDLIHLDC------PQQPNGYDCGIYVCMNTLYGSADAPLDFDYKDAI 205

Query: 132 HARLLLALYLVQSPL 146
             R  +A  ++   L
Sbjct: 206 RMRRFIAHLILTDAL 220

>2oix_A Xanthomonas outer protein D; CLAN CE family 48 cysteine protease, type III secreted effec desumoylating enzyme; 1.80A {Xanthomonas euvesicatoria} PDB: 2oiv_A Length = 186

 Score = 42.3 bits (99), Expect = 1e-05
 Identities = 5/22 (22%), Positives = 13/22 (59%)

Query: 98  VPQQPNGFDCGYYVMKYMDNLS 119
           +  Q +G+  G +V+  ++ L+
Sbjct: 127 IAIQSDGYSAGDHVLTGIEVLA 148

>3eay_A Sentrin-specific protease 7; ULP, SENP, SUMO, ubiquitin, crystal, alternative splicing, hydrolase, phosphoprotein, polymorphism, thiol protease; 2.40A {Homo sapiens} Length = 323

 Score = 42.5 bits (98), Expect = 2e-05
 Identities = 17/107 (15%), Positives = 35/107 (32%), Gaps = 6/107 (5%)

Query: 55  RYMGRLDTCEKLASLDFVLRQEARALFGNRFSFFNFQI-CCQAGVPQQPNGFDCGYYVMK 113
             +        + +L   L  E          F    +      VP+Q N  DCG Y+++
Sbjct: 212 DSLKAASVQNTVQNLREYLEVEWEVKLKTHRQFSKTNMVDLCPKVPKQDNSSDCGVYLLQ 271

Query: 114 YMDNLSIVVHDSYQHDSDHARLLLALYLVQSPLNKIRRRLIQEARKL 160
           Y+++            +    + L  +  +  +   R  + +   KL
Sbjct: 272 YVESFF-----KDPIVNFELPIHLEKWFPRHVIKTKREDIRELILKL 313

>2bkr_A Sentrin-specific protease 8; protein-binding-hydrolase complex, ubiquitin, hydrolase, Pro thiol protease, UBL conjugation pathway, ubiquitin/hydrolas complex; 1.90A {Homo sapiens} SCOP: d.3.1.7 PDB: 2bkq_A 1xt9_A Length = 212

 Score = 41.2 bits (96), Expect = 4e-05
 Identities = 19/121 (15%), Positives = 39/121 (32%), Gaps = 5/121 (4%)

Query: 1   MFHIITMYADYKNMKEAEK--DVTSPRCWFLPTYYSQAALADWSSLNFAQAAGFRDRYMG 58
           +   I   ++   +    +  D+ + R  FL    +    A  S  +       ++ +  
Sbjct: 58  VTQFIKCTSNPAEIAMFLEPLDLPNKRVVFLAINDNSNQAAGGSHWSLLVYLQDKNSFFH 117

Query: 59  RLDTCEKLASLDFVLRQEARALFGNRFSFFNFQICCQAGVPQQPNGFDCGYYVMKYMDNL 118
                   +     + ++  A  G +     F        P Q N +DCG YV+   + L
Sbjct: 118 YDSHSRSNSVHAKQVAEKLEAFLGRKGDKLAFVEEK---APAQQNSYDCGMYVICNTEAL 174

Query: 119 S 119
            
Sbjct: 175 C 175

>1th0_A SMT3-, sentrin-specific protease 2; SUMO, AXAM, SENP, ULP, cell cycle, hydrolase; 2.20A {Homo sapiens} SCOP: d.3.1.7 PDB: 1tgz_A 2io0_A 2io1_A 2io2_A 2io3_A Length = 226

 Score = 40.2 bits (93), Expect = 8e-05
 Identities = 28/151 (18%), Positives = 47/151 (31%), Gaps = 8/151 (5%)

Query: 1   MFHIITMYADYKNMKEAEKDVTSPRC--WFLPTYYSQAALADWSSLNFAQAAGFRDRYMG 58
            F+       Y+ +K   K V         +P +           L              
Sbjct: 78  FFYPKLKSGGYQAVKRWTKGVNLFEQEIILVPIHRKVHWSLVVIDLRKKCLKYLDSMGQK 137

Query: 59  RLDTCEKLASLDFVLRQEARALFGNRFSFFNFQI--CCQAGVPQQPNGFDCGYYVMKYMD 116
               CE L      L+ E++    +  +   +         +PQQ NG DCG +  KY D
Sbjct: 138 GHRICEILLQY---LQDESKTKRNSDLNLLEWTHHSMKPHEIPQQLNGSDCGMFTCKYAD 194

Query: 117 NLSIVVHDSY-QHDSDHARLLLALYLVQSPL 146
            +S     ++ QH     R  +   ++   L
Sbjct: 195 YISRDKPITFTQHQMPLFRKKMVWEILHQQL 225

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	160
1th0_A	226	SMT3-, sentrin-specific protease 2; SUMO, AXAM, SE	99.92
2bkr_A	212	Sentrin-specific protease 8; protein-binding-hydro	99.91
1euv_A	221	ULP1 protease; SUMO hydrolase, ubiquitin-like prot	99.9
2xph_A	238	Sentrin-specific protease 1; hydrolase, cysteine p	99.9
3eay_A	323	Sentrin-specific protease 7; ULP, SENP, SUMO, ubiq	99.8
2oix_A	186	Xanthomonas outer protein D; CLAN CE family 48 cys	99.79

>1th0_A SMT3-, sentrin-specific protease 2; SUMO, AXAM, SENP, ULP, cell cycle, hydrolase; 2.20A {Homo sapiens} SCOP: d.3.1.7 PDB: 1tgz_A 2io0_A 2io1_A 2io2_A 2io3_A

Probab=99.92  E-value=6.6e-26  Score=183.01  Aligned_cols=119  Identities=17%  Similarity=0.272  Sum_probs=97.1

Q ss_pred             cCCCCCceEEeecccccccchhhhhHHH---HhHhhhhhhccCCCcchHHHHHHHHHHHHHHHhhcCCCcccccceeec-
Q 031417           19 KDVTSPRCWFLPTYYSQAALADWSSLNF---AQAAGFRDRYMGRLDTCEKLASLDFVLRQEARALFGNRFSFFNFQICC-   94 (160)
Q Consensus        19 ~d~~~~~~~flpin~~~~~~~~~~~~~~---~~~~~~~d~~~g~~d~~~~l~iL~~yl~~E~~~k~~~~~d~~~w~~~~-   94 (160)
                      .|+.+-+.||+|||+    ++||+++-+   .+.+.|+||+.+....+  .+.+..|+..|++++.+.+++..+|++.. 
T Consensus        98 ~~l~~~~~i~iPin~----~~HW~l~vi~~~~~~i~~~DSl~~~~~~~--~~~l~~~l~~e~~~k~~~~~~~~~w~~~~~  171 (226)
T 1th0_A           98 VNLFEQEIILVPIHR----KVHWSLVVIDLRKKCLKYLDSMGQKGHRI--CEILLQYLQDESKTKRNSDLNLLEWTHHSM  171 (226)
T ss_dssp             CCGGGSSEEEEEEEE----TTEEEEEEEETTTTEEEEECTTCCCCHHH--HHHHHHHHHHHHHHHTSCCCCGGGCEEEEC
T ss_pred             CCcccCCEEEEeEEe----CcEEEEEEEEcCCCceEEEcCCCCCchHH--HHHHHHHHHHHHHHhcCCCCCcccceeccc
Confidence            355567899999997    689998876   46788999998887654  67889999999998888888888998742 


Q ss_pred             -cCCCCCCCCCCCchHHHHHHHHHHhhhhcCCCccCchH---HHHHHHHHHhhcc
Q 031417           95 -QAGVPQQPNGFDCGYYVMKYMDNLSIVVHDSYQHDSDH---ARLLLALYLVQSP  145 (160)
Q Consensus        95 -~~~~PqQ~Ng~DCGVfV~~~~~~i~~~~~~~~~F~q~~---~R~~mv~eiv~~~  145 (160)
                       ..++|||.||+|||||||+||++++.  +.+++|+|.+   +|++|+.||+.+.
T Consensus       172 ~~~~~PqQ~Ng~DCGvfvl~~~~~~~~--~~~~~f~q~dm~~~R~~~~~ei~~~~  224 (226)
T 1th0_A          172 KPHEIPQQLNGSDCGMFTCKYADYISR--DKPITFTQHQMPLFRKKMVWEILHQQ  224 (226)
T ss_dssp             CTTTSCCCCSSSCHHHHHHHHHHHHTT--TCCCCCCGGGHHHHHHHHHHHHHHTC
T ss_pred             cCCCCCCCCCCCCHHHHHHHHHHHHhC--CCCCccChhhHHHHHHHHHHHHHhCC
Confidence             46899999999999999999998864  5689999765   5777777776554

>2bkr_A Sentrin-specific protease 8; protein-binding-hydrolase complex, ubiquitin, hydrolase, Pro thiol protease, UBL conjugation pathway, ubiquitin/hydrolas complex; 1.90A {Homo sapiens} SCOP: d.3.1.7 PDB: 2bkq_A 1xt9_A

Probab=99.91  E-value=4.5e-25  Score=176.01  Aligned_cols=138  Identities=17%  Similarity=0.179  Sum_probs=96.8

Q ss_pred             eccCchhHHhhcc--CCCCCceEEeecccccc---cchhhhhHHHH---hHhhhhhhccCCCcchHHHHHHHHHHHHHHH
Q 031417            7 MYADYKNMKEAEK--DVTSPRCWFLPTYYSQA---ALADWSSLNFA---QAAGFRDRYMGRLDTCEKLASLDFVLRQEAR   78 (160)
Q Consensus         7 ~~~~~~~~~~a~~--d~~~~~~~flpin~~~~---~~~~~~~~~~~---~~~~~~d~~~g~~d~~~~l~iL~~yl~~E~~   78 (160)
                      ...+|.++++.++  |+.+.++||+|||+|.+   +|+||||+.+.   +.+.|+||+.+.....  .+.+...+.....
T Consensus        64 ~~~~~~~v~~~~~~~~l~~~~~i~iPIn~n~~~~~~~~HW~L~vi~~~~~~i~~~DSl~~~n~~~--~~~l~~~l~~~l~  141 (212)
T 2bkr_A           64 CTSNPAEIAMFLEPLDLPNKRVVFLAINDNSNQAAGGSHWSLLVYLQDKNSFFHYDSHSRSNSVH--AKQVAEKLEAFLG  141 (212)
T ss_dssp             HCCCHHHHHHHHGGGTGGGCSEEEEEEECCCSSSSBCCCEEEEEEEGGGTEEEEECSSTTTTHHH--HHHHHHHHHHHHS
T ss_pred             hCCCHHHHHHHhcccccccCCEEEEEEecCCCCCCCCCCeEEEEEEecCCeEEEEeCCCCCCHHH--HHHHHHHHHHHhC
Confidence            4456778888776  88899999999999865   59999998874   5577899998766554  1222233333322


Q ss_pred             hhcCCCcccccceeeccCCCCCCCCCCCchHHHHHHHHHHhhhhcCCCccCchHHHHHHHHHHhhccHHHHHHHHHHHHH
Q 031417           79 ALFGNRFSFFNFQICCQAGVPQQPNGFDCGYYVMKYMDNLSIVVHDSYQHDSDHARLLLALYLVQSPLNKIRRRLIQEAR  158 (160)
Q Consensus        79 ~k~~~~~d~~~w~~~~~~~~PqQ~Ng~DCGVfV~~~~~~i~~~~~~~~~F~q~~~R~~mv~eiv~~~v~~mR~~~l~~i~  158 (160)
                          .++.  .|+. ...++|||.||+|||||||+||++++.+....-.++       ....+.+..++++|++|+++|.
T Consensus       142 ----~~~~--~~~~-~~~~~PqQ~N~~DCGvfvl~~~~~l~~~~~~~~~~~-------~~~~~~~~~i~~~R~~i~~lI~  207 (212)
T 2bkr_A          142 ----RKGD--KLAF-VEEKAPAQQNSYDCGMYVICNTEALCQNFFRQQTES-------LLQLLTPAYITKKRGEWKDLIA  207 (212)
T ss_dssp             ----CTTC--CCCE-EECCCCCCSSSSTHHHHHHHHHHHHHHHHHSCCCCC-------HHHHCCHHHHHHHHHHHHHHHH
T ss_pred             ----Cccc--cceE-eECCCCCCCCCCcHHHHHHHHHHHHHHHhhhcCccc-------ccccCCHHHHHHHHHHHHHHHH
Confidence                2222  1222 246899999999999999999999988753221121       1233337899999999999998


Q ss_pred             hC
Q 031417          159 KL  160 (160)
Q Consensus       159 ~~  160 (160)
                      +|
T Consensus       208 ~L  209 (212)
T 2bkr_A          208 TL  209 (212)
T ss_dssp             HH
T ss_pred             HH
Confidence            75

>1euv_A ULP1 protease; SUMO hydrolase, ubiquitin-like protease 1, SMT3 hydrolase desumoylating enzyme, cysteine protease; 1.60A {Saccharomyces cerevisiae} SCOP: d.3.1.7 PDB: 2hkp_A 2hl8_A 2hl9_A

Probab=99.90  E-value=1e-24  Score=175.86  Aligned_cols=117  Identities=21%  Similarity=0.365  Sum_probs=90.0

Q ss_pred             hccCCCCCceEEeecccccccchhhhhHHH---HhHhhhhhhccCCCcch--HHHHHHHHHHHHHHHhhcCCCcccccce
Q 031417           17 AEKDVTSPRCWFLPTYYSQAALADWSSLNF---AQAAGFRDRYMGRLDTC--EKLASLDFVLRQEARALFGNRFSFFNFQ   91 (160)
Q Consensus        17 a~~d~~~~~~~flpin~~~~~~~~~~~~~~---~~~~~~~d~~~g~~d~~--~~l~iL~~yl~~E~~~k~~~~~d~~~w~   91 (160)
                      +.+|+.+.++||+|||++   ++||+++.+   .+.+.|+||+.++.+..  ..++.++.|+.+|++++.+.+|++.   
T Consensus        94 ~~~~~~~~~~i~iPin~~---~~HW~l~vi~~~~~~i~~~DSl~~~~~~~~~~i~~~l~~~l~~e~~~~~~~~~~~~---  167 (221)
T 1euv_A           94 KKTQIDKLDKIFTPINLN---QSHWALGIIDLKKKTIGYVDSLSNGPNAMSFAILTDLQKYVMEESKHTIGEDFDLI---  167 (221)
T ss_dssp             GTSCGGGCSEEEEEEEET---TTEEEEEEEETTTTEEEEECSSCCSCCHHHHHHHHHHHHHHHHHTTSSSCTTCEEE---
T ss_pred             ccCCcccCCEEEEEEEcC---CCeEEEEEEEcCCCEEEEEecCCCCCcchHHHHHHHHHHHHHHHHHHhcCCCceEe---
Confidence            456888999999999987   467777654   56778999997665543  3457788999999988878887653   


Q ss_pred             eeccCCCCCCCCCCCchHHHHHHHHHHhhhhcCCCccCchHHHHHHHHHHhhccHHHHHHHHHHHH
Q 031417           92 ICCQAGVPQQPNGFDCGYYVMKYMDNLSIVVHDSYQHDSDHARLLLALYLVQSPLNKIRRRLIQEA  157 (160)
Q Consensus        92 ~~~~~~~PqQ~Ng~DCGVfV~~~~~~i~~~~~~~~~F~q~~~R~~mv~eiv~~~v~~mR~~~l~~i  157 (160)
                         ..++|||.||+|||||||+||++++  ++.+++|+|.             +|+++|++|..+|
T Consensus       168 ---~~~~PqQ~N~~DCGvfv~~~~~~~~--~~~~l~f~~~-------------d~~~~R~~i~~~I  215 (221)
T 1euv_A          168 ---HLDCPQQPNGYDCGIYVCMNTLYGS--ADAPLDFDYK-------------DAIRMRRFIAHLI  215 (221)
T ss_dssp             ---EECCCCCSSSSTHHHHHHHHHHHHH--TTCCCCCCHH-------------HHHHHHHHHHHHH
T ss_pred             ---ecCCCCCCCCcCHHHHHHHHHHHHh--CCCCCCcCHH-------------HHHHHHHHHHHHH
Confidence               3689999999999999999999886  4568899954             4555555555554

>2xph_A Sentrin-specific protease 1; hydrolase, cysteine protease, thiol protease; 2.40A {Homo sapiens} PDB: 2xre_A 2iyc_A 2iyd_A 2iy1_A 2iy0_A 2ckg_A 2ckh_A 2g4d_A

Probab=99.90  E-value=2e-24  Score=175.87  Aligned_cols=119  Identities=22%  Similarity=0.289  Sum_probs=96.5

Q ss_pred             cCCCCCceEEeecccccccchhhhhHHHH---hHhhhhhhccCCCcchHHHHHHHHHHHHHHHhhcCCCcccccceee--
Q 031417           19 KDVTSPRCWFLPTYYSQAALADWSSLNFA---QAAGFRDRYMGRLDTCEKLASLDFVLRQEARALFGNRFSFFNFQIC--   93 (160)
Q Consensus        19 ~d~~~~~~~flpin~~~~~~~~~~~~~~~---~~~~~~d~~~g~~d~~~~l~iL~~yl~~E~~~k~~~~~d~~~w~~~--   93 (160)
                      .|+.+-+.||+|||.    |+||+++-+.   +.+.|+||+.+.....  .+.|..|+..|++.+.+.+++..+|++.  
T Consensus       110 ~~l~~~~~i~iPin~----~~HW~L~vi~~~~~~i~~~DSl~~~~~~~--~~~l~~~L~~e~~~k~~~~~~~~~w~~~~~  183 (238)
T 2xph_A          110 VDVFSVDILLVPIHL----GVHWCLAVVDFRKKNITYYDSMGGINNEA--CRILLQYLKQESIDKKRKEFDTNGWQLFSK  183 (238)
T ss_dssp             CCGGGSSEEEEEEEE----TTEEEEEEEETTTTEEEEECTTCCCCHHH--HHHHHHHHHHHHHHHHCSCCCCTTCEEEEC
T ss_pred             CCcccCCEEEEcccC----CCceEEEEEEcccceEEEeecccCCCHHH--HHHHHHHHHHHHHHhcCCCcCcccceeccc
Confidence            355556899999984    6888887664   5678999998877654  5788899999999988888988899874  


Q ss_pred             ccCCCCCCCCCCCchHHHHHHHHHHhhhhcCCCccCchH---HHHHHHHHHhhcc
Q 031417           94 CQAGVPQQPNGFDCGYYVMKYMDNLSIVVHDSYQHDSDH---ARLLLALYLVQSP  145 (160)
Q Consensus        94 ~~~~~PqQ~Ng~DCGVfV~~~~~~i~~~~~~~~~F~q~~---~R~~mv~eiv~~~  145 (160)
                      ...++|||.||+|||||||+||++++.  +.+++|+|.+   +|++|+.||+++.
T Consensus       184 ~~~~~PqQ~Ng~DCGvfvl~~~e~~~~--~~~~~f~q~dm~~~R~~m~~eil~~~  236 (238)
T 2xph_A          184 KSQEIPQQMNGSDCGMFACKYADCITK--DRPINFTQQHMPYFRKRMVWEILHRK  236 (238)
T ss_dssp             CSSSSCCCSBGGGHHHHHHHHHHHHHT--TCCCCCCGGGHHHHHHHHHHHHHHTC
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHhc--CCCCCcChhhHHHHHHHHHHHHHhCC
Confidence            357899999999999999999998874  5688999765   5777777777654

>3eay_A Sentrin-specific protease 7; ULP, SENP, SUMO, ubiquitin, crystal, alternative splicing, hydrolase, phosphoprotein, polymorphism, thiol protease; 2.40A {Homo sapiens}

Probab=99.80  E-value=1.1e-20  Score=163.66  Aligned_cols=104  Identities=20%  Similarity=0.257  Sum_probs=78.8

Q ss_pred             hhhhhhccCCCcchHHHHHHHHHHHHHHHhhcCC--CcccccceeeccCCCCCCCCCCCchHHHHHHHHHHhhhhcCCCc
Q 031417           50 AGFRDRYMGRLDTCEKLASLDFVLRQEARALFGN--RFSFFNFQICCQAGVPQQPNGFDCGYYVMKYMDNLSIVVHDSYQ  127 (160)
Q Consensus        50 ~~~~d~~~g~~d~~~~l~iL~~yl~~E~~~k~~~--~~d~~~w~~~~~~~~PqQ~Ng~DCGVfV~~~~~~i~~~~~~~~~  127 (160)
                      +-|+||+.|..+.- .++.|+.||.+|++++.+.  +|+..+|.... ..+|||.||+|||||||+||++++.  +.+++
T Consensus       208 Il~lDSL~~~~~~~-~~~~Lr~YL~~E~~~k~~~~~~f~~~~~~~~~-~~~P~Q~N~~DCGvfvl~~~e~~~~--~~~~~  283 (323)
T 3eay_A          208 ILILDSLKAASVQN-TVQNLREYLEVEWEVKLKTHRQFSKTNMVDLC-PKVPKQDNSSDCGVYLLQYVESFFK--DPIVN  283 (323)
T ss_dssp             EEEECSSCCSSHHH-HHHHHHHHHHHHHHHHHSSCCCCCTTTSCEEC-CBCCCCCSTTCHHHHHHHHHHHHHH--SCCCC
T ss_pred             EEEEECCCCCCcch-HHHHHHHHHHHHHHhhcCCCcCCCHhHceecc-CCCCCcCCCCcHHHHHHHHHHHHHh--CCccc
Confidence            68899998865332 3689999999999988654  45545666544 4699999999999999999998874  45677


Q ss_pred             cCchHHHHHHHHHHhhccHHHHHHHHHHHHHhC
Q 031417          128 HDSDHARLLLALYLVQSPLNKIRRRLIQEARKL  160 (160)
Q Consensus       128 F~q~~~R~~mv~eiv~~~v~~mR~~~l~~i~~~  160 (160)
                      |+++-.   ...-+.+..+..+|++|..+|.+|
T Consensus       284 f~~~~~---~~~wf~~~~i~~kR~ei~~LI~~L  313 (323)
T 3eay_A          284 FELPIH---LEKWFPRHVIKTKREDIRELILKL  313 (323)
T ss_dssp             CCSSCB---CTTSSCHHHHHTHHHHHHHHHHHH
T ss_pred             cccccc---cccCCCHHHHHHHHHHHHHHHHHH
Confidence            775421   122234788999999999999875

>2oix_A Xanthomonas outer protein D; CLAN CE family 48 cysteine protease, type III secreted effec desumoylating enzyme; 1.80A {Xanthomonas euvesicatoria} PDB: 2oiv_A

Probab=99.79  E-value=4e-20  Score=146.55  Aligned_cols=112  Identities=18%  Similarity=0.147  Sum_probs=73.2

Q ss_pred             CceEEeecccccccchhhhhHHHHh---Hh---hhhhhccCCCcchHHHHHHHHHHHHHHHhhcCCCcccccceeeccCC
Q 031417           24 PRCWFLPTYYSQAALADWSSLNFAQ---AA---GFRDRYMGRLDTCEKLASLDFVLRQEARALFGNRFSFFNFQICCQAG   97 (160)
Q Consensus        24 ~~~~flpin~~~~~~~~~~~~~~~~---~~---~~~d~~~g~~d~~~~l~iL~~yl~~E~~~k~~~~~d~~~w~~~~~~~   97 (160)
                      .+.||+|||++   |+||||+.++.   .+   -|+||+.+......       .+.+..++..+.+..  .+   ...+
T Consensus        62 ~~~i~iPin~~---~~HWsLlvi~~~~~~~~~~~~~DSl~~~~~~~~-------~l~~~l~~~l~~~~~--~~---~~~~  126 (186)
T 2oix_A           62 PPIVFLPINQP---NAHWSLLVVDRRNKDAVAAYHYDSMAQKDPQQR-------YLADMAAYHLGLDYQ--QT---HEMP  126 (186)
T ss_dssp             CSEEEEEEEET---TTEEEEEEEECSSTTSCEEEEECCCSSCCHHHH-------HHHHHHHHHTTCCGG--GC---EEEC
T ss_pred             cCEEEEEEeCC---CCccEEEEEECCCCeeeeeEEEcCCCCCCHHHH-------HHHHHHHHHhCCCcc--cc---ccCC
Confidence            79999999994   78999887754   45   78999987443321       123333344444432  11   2467


Q ss_pred             CCCCCCCCCchHHHHHHHHHHhhhh--cCCCccCchHHHHHHHHHHhhccHHHHHHHHHHHHHhC
Q 031417           98 VPQQPNGFDCGYYVMKYMDNLSIVV--HDSYQHDSDHARLLLALYLVQSPLNKIRRRLIQEARKL  160 (160)
Q Consensus        98 ~PqQ~Ng~DCGVfV~~~~~~i~~~~--~~~~~F~q~~~R~~mv~eiv~~~v~~mR~~~l~~i~~~  160 (160)
                      +|||.||+|||||||+||++++...  +.+..++          .+-...+.++|++|..+|+++
T Consensus       127 ~PqQ~Ng~DCGvfv~~~~~~l~~~~~~~~~~~~~----------~~~~~~i~~~R~~i~~lI~~~  181 (186)
T 2oix_A          127 IAIQSDGYSAGDHVLTGIEVLAHRVLDGTFDYAG----------GRDLTDIEPDRGLIRDRLAQA  181 (186)
T ss_dssp             BCCCC--CCHHHHHHHHHHHHHHHHHHTCTTSTT----------TTCBTTCCCCHHHHHHHHHCC
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHhhcCccCCC----------cCCHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999998653  2111111          011567788888888888764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	160
d2iy1a1	225	d.3.1.7 (A:419-643) Sentrin-specific protease 1 {H	4e-07
d1th0a_	226	d.3.1.7 (A:) Sentrin-specific protease 2, SENP2 {H	5e-07
d1euva_	221	d.3.1.7 (A:) Ulp1 protease C-terminal domain {Bake	3e-06
d2bkra1	212	d.3.1.7 (A:1-212) Sentrin-specific protease 8, SEN	2e-04

>d2iy1a1 d.3.1.7 (A:419-643) Sentrin-specific protease 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 225

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Sentrin-specific protease 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.6 bits (107), Expect = 4e-07
 Identities = 29/151 (19%), Positives = 49/151 (32%), Gaps = 8/151 (5%)

Query: 1   MFHIITMYADYKNMKEAEK--DVTSPRCWFLPTYYSQAALADWSSLNFAQAAGFRDRYMG 58
            F      A Y+ +K   K  DV S     +P +                   +      
Sbjct: 78  FFFTKLKTAGYQAVKRWTKKVDVFSVDILLVPIHLGVHWCLAVVDFRKKNITYYDSMGGI 137

Query: 59  RLDTCEKLASLDFVLRQEARALFGNRFSFFNFQICC--QAGVPQQPNGFDCGYYVMKYMD 116
             + C  L      L+QE+       F    +Q+       +PQQ NG D G +  KY D
Sbjct: 138 NNEACRILLQY---LKQESIDKKRKEFDTNGWQLFSKKSQEIPQQMNGSDAGMFACKYAD 194

Query: 117 NLSIVVHDSY-QHDSDHARLLLALYLVQSPL 146
            ++     ++ Q    + R  +   ++   L
Sbjct: 195 CITKDRPINFTQQHMPYFRKRMVWEILHRKL 225

>d1th0a_ d.3.1.7 (A:) Sentrin-specific protease 2, SENP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 226

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Sentrin-specific protease 2, SENP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (106), Expect = 5e-07
 Identities = 27/154 (17%), Positives = 53/154 (34%), Gaps = 14/154 (9%)

Query: 1   MFHIITMYADYKNMKEAEK--DVTSPRCWFLPTYYSQAALADWSSLNFAQAAG---FRDR 55
            F+       Y+ +K   K  ++       +P +        WS +          + D 
Sbjct: 78  FFYPKLKSGGYQAVKRWTKGVNLFEQEIILVPIHRKVH----WSLVVIDLRKKCLKYLDS 133

Query: 56  YMGRLDTCEKLASLDFVLRQEARALFGNRFSFFNFQI--CCQAGVPQQPNGFDCGYYVMK 113
              +     ++  L   L+ E++    +  +   +         +PQQ NG DCG +  K
Sbjct: 134 MGQKGHRICEI--LLQYLQDESKTKRNSDLNLLEWTHHSMKPHEIPQQLNGSDCGMFTCK 191

Query: 114 YMDNLSIVVHDSY-QHDSDHARLLLALYLVQSPL 146
           Y D +S     ++ QH     R  +   ++   L
Sbjct: 192 YADYISRDKPITFTQHQMPLFRKKMVWEILHQQL 225

>d1euva_ d.3.1.7 (A:) Ulp1 protease C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 221

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Ulp1 protease C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.9 bits (100), Expect = 3e-06
 Identities = 21/82 (25%), Positives = 32/82 (39%), Gaps = 7/82 (8%)

Query: 66  LASLDFVLRQEARALFGNRFSFFNFQICCQAGVPQQPNGFDCGYYVMKYMDNLSIVVHDS 125
           L  L   + +E++   G  F   +         PQQPNG+DCG YV       S      
Sbjct: 145 LTDLQKYVMEESKHTIGEDFDLIHLDC------PQQPNGYDCGIYVCMNTLYGSADAPLD 198

Query: 126 Y-QHDSDHARLLLALYLVQSPL 146
           +   D+   R  +A  ++   L
Sbjct: 199 FDYKDAIRMRRFIAHLILTDAL 220

>d2bkra1 d.3.1.7 (A:1-212) Sentrin-specific protease 8, SENP8 {Human (Homo sapiens) [TaxId: 9606]} Length = 212

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Sentrin-specific protease 8, SENP8
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (88), Expect = 2e-04
 Identities = 22/123 (17%), Positives = 38/123 (30%), Gaps = 9/123 (7%)

Query: 1   MFHIITMYADYKNMKEAEK--DVTSPRCWFLPTYYS--QAALADWSSLNFAQAAGFRDRY 56
           +   I   ++   +    +  D+ + R  FL    +  QAA     SL           +
Sbjct: 58  VTQFIKCTSNPAEIAMFLEPLDLPNKRVVFLAINDNSNQAAGGSHWSLLVYLQDKNSFFH 117

Query: 57  MGRLDTCEKLASLDFVLRQEARALFGNRFSFFNFQICCQAGVPQQPNGFDCGYYVMKYMD 116
                    + +     +    A  G +     F        P Q N +DCG YV+   +
Sbjct: 118 YDSHSRSNSVHAKQVAEK--LEAFLGRKGDKLAFVEEK---APAQQNSYDCGMYVICNTE 172

Query: 117 NLS 119
            L 
Sbjct: 173 ALC 175

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	160
d2iy1a1	225	Sentrin-specific protease 1 {Human (Homo sapiens)	99.87
d1euva_	221	Ulp1 protease C-terminal domain {Baker's yeast (Sa	99.86
d1th0a_	226	Sentrin-specific protease 2, SENP2 {Human (Homo sa	99.86
d2bkra1	212	Sentrin-specific protease 8, SENP8 {Human (Homo sa	99.85

>d2iy1a1 d.3.1.7 (A:419-643) Sentrin-specific protease 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Sentrin-specific protease 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=6.4e-23  Score=159.98  Aligned_cols=128  Identities=21%  Similarity=0.267  Sum_probs=97.4

Q ss_pred             CchhHHhhc--cCCCCCceEEeecccccccchhhhhHHH---HhHhhhhhhccCCCcchHHHHHHHHHHHHHHHhhcCCC
Q 031417           10 DYKNMKEAE--KDVTSPRCWFLPTYYSQAALADWSSLNF---AQAAGFRDRYMGRLDTCEKLASLDFVLRQEARALFGNR   84 (160)
Q Consensus        10 ~~~~~~~a~--~d~~~~~~~flpin~~~~~~~~~~~~~~---~~~~~~~d~~~g~~d~~~~l~iL~~yl~~E~~~k~~~~   84 (160)
                      ++.++++..  .|+.+.+.||+|||.    ++||+++-+   ...+-++||+.+..+..  ...+..++..+...+....
T Consensus        87 ~~~~~~~~~~~~~~~~~~~I~iPin~----~~HW~l~vi~~~~~~i~~~DSl~~~~~~~--~~~i~~~l~~~~~~~~~~~  160 (225)
T d2iy1a1          87 GYQAVKRWTKKVDVFSVDILLVPIHL----GVHWCLAVVDFRKKNITYYDSMGGINNEA--CRILLQYLKQESIDKKRKE  160 (225)
T ss_dssp             CGGGTGGGGTTCCGGGSSEEEEEEEC----SSCEEEEEEETTTTEEEEECTTCCCCHHH--HHHHHHHHHHHHHHHHSSC
T ss_pred             CHHHHHHHHhccccccCCEEEEEEeC----CCCEEEEEEEeccceEEEEecCCCCchHH--HHHHHHHHHHHHHHhccCc
Confidence            344444443  378889999999995    578887755   45666999998877765  4677777888888888888


Q ss_pred             cccccceee--ccCCCCCCCCCCCchHHHHHHHHHHhhhhcCCCccCchH---HHHHHHHHHhhcc
Q 031417           85 FSFFNFQIC--CQAGVPQQPNGFDCGYYVMKYMDNLSIVVHDSYQHDSDH---ARLLLALYLVQSP  145 (160)
Q Consensus        85 ~d~~~w~~~--~~~~~PqQ~Ng~DCGVfV~~~~~~i~~~~~~~~~F~q~~---~R~~mv~eiv~~~  145 (160)
                      ++..+|+..  ...+||||.||+|||||||+||++++.  +.+++|+|.+   +|++|+.||+++.
T Consensus       161 ~~~~~~~~~~~~~~~~pqQ~Ng~DCGvfvl~~~~~~~~--~~~~~~~q~~~~~~R~~~~~~l~~~~  224 (225)
T d2iy1a1         161 FDTNGWQLFSKKSQEIPQQMNGSDAGMFACKYADCITK--DRPINFTQQHMPYFRKRMVWEILHRK  224 (225)
T ss_dssp             CCCTTCEEEECCTTTSCCCCSSSTHHHHHHHHHHHHHT--TCCCCCCGGGHHHHHHHHHHHHHTTC
T ss_pred             cCcccceecccccccCCCCCCCCChHHHHHHHHHHHhC--CCCCCcCHHHHHHHHHHHHHHHHhCc
Confidence            887887753  346899999999999999999999875  4577888755   5777777777553

>d1euva_ d.3.1.7 (A:) Ulp1 protease C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Ulp1 protease C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.86  E-value=8.4e-23  Score=161.88  Aligned_cols=119  Identities=21%  Similarity=0.376  Sum_probs=91.3

Q ss_pred             hhccCCCCCceEEeecccccccchhhhhHHH---HhHhhhhhhccCCCcchH--HHHHHHHHHHHHHHhhcCCCcccccc
Q 031417           16 EAEKDVTSPRCWFLPTYYSQAALADWSSLNF---AQAAGFRDRYMGRLDTCE--KLASLDFVLRQEARALFGNRFSFFNF   90 (160)
Q Consensus        16 ~a~~d~~~~~~~flpin~~~~~~~~~~~~~~---~~~~~~~d~~~g~~d~~~--~l~iL~~yl~~E~~~k~~~~~d~~~w   90 (160)
                      ....++.+-++||+|||.+   ++||+++-+   ...+-|+||+.+..+...  .++.|..|+.+|.+.+.+.+|++.. 
T Consensus        93 ~~~~~~~~~~~i~iPin~~---~~HW~l~vi~~~~~~i~~~DSl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~-  168 (221)
T d1euva_          93 RKKTQIDKLDKIFTPINLN---QSHWALGIIDLKKKTIGYVDSLSNGPNAMSFAILTDLQKYVMEESKHTIGEDFDLIH-  168 (221)
T ss_dssp             GGTSCGGGCSEEEEEEEET---TTEEEEEEEETTTTEEEEECSSCCSCCHHHHHHHHHHHHHHHHHTTSSSCTTCEEEE-
T ss_pred             hcccchhhcceeEeeEecc---cceEEEEEeeccccceeeeccccCCCcHHHHHHHHHHHHHHHHHHHhhcCCCCeeee-
Confidence            3556888899999999975   567766654   666889999977666542  2456778888888888888888653 


Q ss_pred             eeeccCCCCCCCCCCCchHHHHHHHHHHhhhhcCCCccCchH---HHHHHHHHHhhcc
Q 031417           91 QICCQAGVPQQPNGFDCGYYVMKYMDNLSIVVHDSYQHDSDH---ARLLLALYLVQSP  145 (160)
Q Consensus        91 ~~~~~~~~PqQ~Ng~DCGVfV~~~~~~i~~~~~~~~~F~q~~---~R~~mv~eiv~~~  145 (160)
                           .++|||.||+|||||||+||++++.  +.+++|+|.+   +|+.|+.+|+.+.
T Consensus       169 -----~~~PqQ~N~~DCGvfvl~~~~~~~~--~~~~~~~q~d~~~~R~~i~~~il~~~  219 (221)
T d1euva_         169 -----LDCPQQPNGYDCGIYVCMNTLYGSA--DAPLDFDYKDAIRMRRFIAHLILTDA  219 (221)
T ss_dssp             -----ECCCCCSSSSTHHHHHHHHHHHHHT--TCCCCCCHHHHHHHHHHHHHHHHTTT
T ss_pred             -----ccCCCCCCCCChHHHHHHHHHHHhC--CCCCccCHHHHHHHHHHHHHHHHHhh
Confidence                 4789999999999999999998864  5688999654   5666666666543

>d1th0a_ d.3.1.7 (A:) Sentrin-specific protease 2, SENP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Sentrin-specific protease 2, SENP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=3.4e-22  Score=155.95  Aligned_cols=127  Identities=17%  Similarity=0.271  Sum_probs=95.1

Q ss_pred             CchhHHhhc--cCCCCCceEEeecccccccchhhhhHHHHhH---hhhhhhccCCCcchHHHHHHHHHHHHHHHhhcCCC
Q 031417           10 DYKNMKEAE--KDVTSPRCWFLPTYYSQAALADWSSLNFAQA---AGFRDRYMGRLDTCEKLASLDFVLRQEARALFGNR   84 (160)
Q Consensus        10 ~~~~~~~a~--~d~~~~~~~flpin~~~~~~~~~~~~~~~~~---~~~~d~~~g~~d~~~~l~iL~~yl~~E~~~k~~~~   84 (160)
                      ++.++++..  .++.+.++||+|||.+    +||+++-+...   +.++||+.+..+..  ...+..|+.++++.+....
T Consensus        87 ~~~~~~~~~~~~~l~~~~~i~iPin~~----~HW~L~vi~~~~~~i~~~DSl~~~~~~~--~~~i~~~l~~~~~~~~~~~  160 (226)
T d1th0a_          87 GYQAVKRWTKGVNLFEQEIILVPIHRK----VHWSLVVIDLRKKCLKYLDSMGQKGHRI--CEILLQYLQDESKTKRNSD  160 (226)
T ss_dssp             TGGGTGGGGTTCCGGGSSEEEEEEEET----TEEEEEEEETTTTEEEEECTTCCCCHHH--HHHHHHHHHHHHHHHTSCC
T ss_pred             cHHHHHHHHhccCcccCCEEEEeEEcC----CceEEEEEEeccceEEEeccccCCChHH--HHHHHHHHHHHHHHhhCCC
Confidence            344454444  4788889999999954    68888766544   56899988776654  5778888999999887877


Q ss_pred             cccccceee--ccCCCCCCCCCCCchHHHHHHHHHHhhhhcCCCccCchH---HHHHHHHHHhhc
Q 031417           85 FSFFNFQIC--CQAGVPQQPNGFDCGYYVMKYMDNLSIVVHDSYQHDSDH---ARLLLALYLVQS  144 (160)
Q Consensus        85 ~d~~~w~~~--~~~~~PqQ~Ng~DCGVfV~~~~~~i~~~~~~~~~F~q~~---~R~~mv~eiv~~  144 (160)
                      .+..+|...  ...++|||.||+|||||||+||++++.  +.+++|+|.+   +|.+|+.||+.+
T Consensus       161 ~~~~~~~~~~~~~~~~pqQ~N~~DCGvfvl~~~~~~~~--~~~~~~tq~di~~~R~~i~~el~~~  223 (226)
T d1th0a_         161 LNLLEWTHHSMKPHEIPQQLNGSDCGMFTCKYADYISR--DKPITFTQHQMPLFRKKMVWEILHQ  223 (226)
T ss_dssp             CCGGGCEEEECCTTTSCCCCSSSCHHHHHHHHHHHHTT--TCCCCCCGGGHHHHHHHHHHHHHHT
T ss_pred             cCcccceeeeeccCCCCCCCCCCCHHHHHHHHHHHHhC--CCCCCcCHHHHHHHHHHHHHHHHHc
Confidence            777776642  346799999999999999999999874  4678888644   466666666544

>d2bkra1 d.3.1.7 (A:1-212) Sentrin-specific protease 8, SENP8 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Sentrin-specific protease 8, SENP8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=2e-22  Score=156.57  Aligned_cols=136  Identities=18%  Similarity=0.232  Sum_probs=93.7

Q ss_pred             cCchhHHhhcc--CCCCCceEEeecccccc---cchhhhhHHH---HhHhhhhhhccCCCcchHHHHHHHHHHHHHHHhh
Q 031417            9 ADYKNMKEAEK--DVTSPRCWFLPTYYSQA---ALADWSSLNF---AQAAGFRDRYMGRLDTCEKLASLDFVLRQEARAL   80 (160)
Q Consensus         9 ~~~~~~~~a~~--d~~~~~~~flpin~~~~---~~~~~~~~~~---~~~~~~~d~~~g~~d~~~~l~iL~~yl~~E~~~k   80 (160)
                      .++..+++...  |+.+-++||+|||++..   .|+||+++-+   ...+-|+||+.+.....  .+.+..++.++....
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~ifiPIn~~~~~~~~g~HW~l~vi~~~~~~i~~~DSl~~~~~~~--~~~~~~~l~~~~~~~  143 (212)
T d2bkra1          66 SNPAEIAMFLEPLDLPNKRVVFLAINDNSNQAAGGSHWSLLVYLQDKNSFFHYDSHSRSNSVH--AKQVAEKLEAFLGRK  143 (212)
T ss_dssp             CCHHHHHHHHGGGTGGGCSEEEEEEECCCSSSSBCCCEEEEEEEGGGTEEEEECSSTTTTHHH--HHHHHHHHHHHHSCT
T ss_pred             ccHHHHHHHHhccChhhccEEEEecccccccccCcceeeeeeeccccceEEEecCCCcCCHHH--HHHHHHHHHHHhccc
Confidence            34555555544  78889999999999975   5999999876   46677889987765443  334444454443322


Q ss_pred             cCCCcccccceeeccCCCCCCCCCCCchHHHHHHHHHHhhhhcCCCccCchHHHHHHHHHHhhccHHHHHHHHHHHHHhC
Q 031417           81 FGNRFSFFNFQICCQAGVPQQPNGFDCGYYVMKYMDNLSIVVHDSYQHDSDHARLLLALYLVQSPLNKIRRRLIQEARKL  160 (160)
Q Consensus        81 ~~~~~d~~~w~~~~~~~~PqQ~Ng~DCGVfV~~~~~~i~~~~~~~~~F~q~~~R~~mv~eiv~~~v~~mR~~~l~~i~~~  160 (160)
                       +..+.+      ....+|||.||+|||||||.||+.++.........+       ....+.+..+.+||++|+.+|.+|
T Consensus       144 -~~~~~~------~~~~~p~Q~N~~DCGvfv~~~~~~l~~~~~~~~~~~-------~~~~~~~~~i~~~R~~l~~lI~~L  209 (212)
T d2bkra1         144 -GDKLAF------VEEKAPAQQNSYDCGMYVICNTEALCQNFFRQQTES-------LLQLLTPAYITKKRGEWKDLIATL  209 (212)
T ss_dssp             -TCCCCE------EECCCCCCSSSSTHHHHHHHHHHHHHHHHHSCCCCC-------HHHHCCHHHHHHHHHHHHHHHHHH
T ss_pred             -cCceee------eecccCCCCCCCChHHHHHHHHHHHHHhcccccchh-------hhhcCCHHHHHHHHHHHHHHHHHH
Confidence             233332      247799999999999999999999976542221111       112344788999999999999864