Citrus Sinensis ID: 031424

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160
MLLTLPFKFGIKFMILFSGCFLFQATTGMWVADECKNSFMEMKWKKVHRYIVFKIDEKSKLVTVDKVGGAGEGYEDLAASLPDDDCRYAVFDFDFVTVDNCRKSKIFFIAWAPTASRIRAKMLYATSKDGLRRVLDGIHYEVQATDPTEMGFDVIMDRAK
ccEEccccccEEEEEEEcccccccccccccccHHHHHHHHHHHcccccEEEEEEEEccccEEEEEEcccccccHHHHHccccccccEEEEEEEEEEcccccEEEEEEEEEEcccccccHHHHHHHHHHHHHHHHcccEEEEEEEcccccccHHHHHHHHc
cEEEEEcccHHEEEEEEccccHcccccccEEcHHHHHHHHHHHHHccccEEEEEEEccccEEEEEEEccccccHHHHHccccccccEEEEEEEEEEcccccEEEEEEEEEEccccccHHHHHHHHHHHHHHHcccccccEEEEEcccccccHHHHHHHHc
mlltlpfkfGIKFMILFSGCflfqattgMWVADECKNSFMEMKWKKVHRYIVFKideksklvtvdkvggagegyedlaaslpdddcryavfdfdfvtvdncrkSKIFFIAWAPTASRIRAKMLYATSKDGLRRVLDGIhyevqatdptemgfDVIMDRAK
MLLTLPFKFGIKFMILFSGCFLFQATTGMWVADECKNSFMEMKWKKVHRYIvfkideksklvTVDKVGGAGEGYEDLAASLPDDDCRYAVFDFDFVTVDNCRKSKIFfiawaptasrIRAKMLYATSKDGLRRVLDGIhyevqatdptemgfDVIMDRAK
MLLTLPFKFGIKFMILFSGCFLFQATTGMWVADECKNSFMEMKWKKVHRYIVFKIDEKSKLVTVDKVGGAGEGYEDLAASLPDDDCRYAVFDFDFVTVDNCRKSKIFFIAWAPTASRIRAKMLYATSKDGLRRVLDGIHYEVQATDPTEMGFDVIMDRAK
**LTLPFKFGIKFMILFSGCFLFQATTGMWVADECKNSFMEMKWKKVHRYIVFKIDEKSKLVTVDKVGGAGEGYEDLAASLPDDDCRYAVFDFDFVTVDNCRKSKIFFIAWAPTASRIRAKMLYATSKDGLRRVLDGIHYEVQATDPTEMGFDV******
*******KFGIKFMILFSGCFLFQATTGMWVADECKNSFMEMKWKKVHRYIVFKIDEKSKLVTVDKVGGAGEGYEDLAASLPDDDCRYAVFDFDFVTVDNCRKSKIFFIAWAPTASRIRAKMLYATSKDGLRRVLDGIHYEVQATDPTEMGFDVIMDRAK
MLLTLPFKFGIKFMILFSGCFLFQATTGMWVADECKNSFMEMKWKKVHRYIVFKIDEKSKLVTVDKVGGAGEGYEDLAASLPDDDCRYAVFDFDFVTVDNCRKSKIFFIAWAPTASRIRAKMLYATSKDGLRRVLDGIHYEVQATDPTEMGFDVIMDRAK
MLLTLPFKFGIKFMILFSGCFLFQATTGMWVADECKNSFMEMKWKKVHRYIVFKIDEKSKLVTVDKVGGAGEGYEDLAASLPDDDCRYAVFDFDFVTVDNCRKSKIFFIAWAPTASRIRAKMLYATSKDGLRRVLDGIHYEVQATDPTEMGFDVIMDRAK
oooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MLLTLPFKFGIKFMILFSGCFLFQATTGMWVADECKNSFMEMKWKKVHRYIVFKIDEKSKLVTVDKVGGAGEGYEDLAASLPDDDCRYAVFDFDFVTVDNCRKSKIFFIAWAPTASRIRAKMLYATSKDGLRRVLDGIHYEVQATDPTEMGFDVIMDRAK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query160 2.2.26 [Sep-21-2011]
Q9ZNT3143 Actin-depolymerizing fact yes no 0.85 0.951 0.845 5e-64
O49606141 Actin-depolymerizing fact no no 0.868 0.985 0.791 1e-63
Q10P87143 Actin-depolymerizing fact yes no 0.85 0.951 0.779 5e-60
Q9ZSK2146 Actin-depolymerizing fact no no 0.9 0.986 0.611 6e-49
Q8SAG3143 Actin-depolymerizing fact no no 0.856 0.958 0.656 2e-48
Q2QLT8145 Actin-depolymerizing fact no no 0.85 0.937 0.588 1e-47
Q9FVI2139 Actin-depolymerizing fact N/A no 0.862 0.992 0.601 1e-47
Q9AY76145 Actin-depolymerizing fact no no 0.85 0.937 0.580 1e-45
Q6EUH7139 Actin-depolymerizing fact no no 0.85 0.978 0.602 1e-45
Q570Y6140 Actin-depolymerizing fact no no 0.843 0.964 0.577 1e-45
>sp|Q9ZNT3|ADF5_ARATH Actin-depolymerizing factor 5 OS=Arabidopsis thaliana GN=ADF5 PE=1 SV=1 Back     alignment and function desciption
 Score =  243 bits (619), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 115/136 (84%), Positives = 125/136 (91%)

Query: 25  ATTGMWVADECKNSFMEMKWKKVHRYIVFKIDEKSKLVTVDKVGGAGEGYEDLAASLPDD 84
           ATTGM V DEC +SFM+MKWKKVHRYIVFKI+EKS+ VTVDKVGGAGE Y DL  SLP D
Sbjct: 8   ATTGMRVTDECTSSFMDMKWKKVHRYIVFKIEEKSRKVTVDKVGGAGESYHDLEDSLPVD 67

Query: 85  DCRYAVFDFDFVTVDNCRKSKIFFIAWAPTASRIRAKMLYATSKDGLRRVLDGIHYEVQA 144
           DCRYAVFDFDFVTVDNCRKSKIFFIAW+P AS+IRAK+LYATSKDGLRRVL+GIHYE+QA
Sbjct: 68  DCRYAVFDFDFVTVDNCRKSKIFFIAWSPEASKIRAKILYATSKDGLRRVLEGIHYELQA 127

Query: 145 TDPTEMGFDVIMDRAK 160
           TDPTEMGFD+I DRAK
Sbjct: 128 TDPTEMGFDIIQDRAK 143
Actin-depolymerizing protein. Severs actin filaments (F-actin) and binds to actin monomers.
Arabidopsis thaliana (taxid: 3702)
>sp|O49606|ADF9_ARATH Actin-depolymerizing factor 9 OS=Arabidopsis thaliana GN=ADF9 PE=2 SV=2 Back     alignment and function description
>sp|Q10P87|ADF5_ORYSJ Actin-depolymerizing factor 5 OS=Oryza sativa subsp. japonica GN=ADF5 PE=2 SV=1 Back     alignment and function description
>sp|Q9ZSK2|ADF6_ARATH Actin-depolymerizing factor 6 OS=Arabidopsis thaliana GN=ADF6 PE=1 SV=1 Back     alignment and function description
>sp|Q8SAG3|ADF_VITVI Actin-depolymerizing factor OS=Vitis vinifera PE=2 SV=1 Back     alignment and function description
>sp|Q2QLT8|ADF11_ORYSJ Actin-depolymerizing factor 11 OS=Oryza sativa subsp. japonica GN=ADF11 PE=2 SV=1 Back     alignment and function description
>sp|Q9FVI2|ADF1_PETHY Actin-depolymerizing factor 1 OS=Petunia hybrida GN=ADF1 PE=2 SV=1 Back     alignment and function description
>sp|Q9AY76|ADF2_ORYSJ Actin-depolymerizing factor 2 OS=Oryza sativa subsp. japonica GN=ADF2 PE=2 SV=1 Back     alignment and function description
>sp|Q6EUH7|ADF1_ORYSJ Actin-depolymerizing factor 1 OS=Oryza sativa subsp. japonica GN=ADF1 PE=2 SV=1 Back     alignment and function description
>sp|Q570Y6|ADF8_ARATH Actin-depolymerizing factor 8 OS=Arabidopsis thaliana GN=ADF8 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query160
449458598168 PREDICTED: actin-depolymerizing factor 5 0.987 0.940 0.806 1e-70
224078252143 predicted protein [Populus trichocarpa] 0.85 0.951 0.919 4e-69
351725399143 uncharacterized protein LOC100526982 [Gl 0.85 0.951 0.926 2e-68
89276301141 actin depolymerizing factor 5 [Gossypium 0.843 0.957 0.925 5e-68
224105181143 predicted protein [Populus trichocarpa] 0.85 0.951 0.904 9e-68
388496012173 unknown [Lotus japonicus] 0.85 0.786 0.904 1e-67
388510466173 unknown [Medicago truncatula] 0.85 0.786 0.889 4e-67
225427991143 PREDICTED: actin-depolymerizing factor 5 0.85 0.951 0.904 5e-67
449458600143 PREDICTED: actin-depolymerizing factor 5 0.85 0.951 0.889 2e-66
356538630132 PREDICTED: actin-depolymerizing factor 5 0.825 1.0 0.931 2e-66
>gi|449458598|ref|XP_004147034.1| PREDICTED: actin-depolymerizing factor 5-like isoform 1 [Cucumis sativus] Back     alignment and taxonomy information
 Score =  270 bits (691), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 129/160 (80%), Positives = 140/160 (87%), Gaps = 2/160 (1%)

Query: 1   MLLTLPFKFGIKFMILFSGCFLFQATTGMWVADECKNSFMEMKWKKVHRYIVFKIDEKSK 60
           +L++      I  +I FS  FL QATTGMWV+DECKNSFMEMKWKKVHRYIVFKIDE S+
Sbjct: 11  ILISFTSSLTINILIFFS--FLLQATTGMWVSDECKNSFMEMKWKKVHRYIVFKIDEGSR 68

Query: 61  LVTVDKVGGAGEGYEDLAASLPDDDCRYAVFDFDFVTVDNCRKSKIFFIAWAPTASRIRA 120
           LVTVDKVGG  E Y+DL ASLP+DDCRYAVFDFDFVTVDNCRKSKIFFIAW+PT SRIRA
Sbjct: 69  LVTVDKVGGPAESYDDLTASLPNDDCRYAVFDFDFVTVDNCRKSKIFFIAWSPTESRIRA 128

Query: 121 KMLYATSKDGLRRVLDGIHYEVQATDPTEMGFDVIMDRAK 160
           K+LYATSKDGLRRVL+GIHYEVQATDPTEMG DVI DRAK
Sbjct: 129 KILYATSKDGLRRVLEGIHYEVQATDPTEMGIDVIKDRAK 168

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224078252|ref|XP_002305510.1| predicted protein [Populus trichocarpa] gi|118484861|gb|ABK94297.1| unknown [Populus trichocarpa] gi|222848474|gb|EEE86021.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|351725399|ref|NP_001236835.1| uncharacterized protein LOC100526982 [Glycine max] gi|255631302|gb|ACU16018.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|89276301|gb|ABD66507.1| actin depolymerizing factor 5 [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|224105181|ref|XP_002313717.1| predicted protein [Populus trichocarpa] gi|118487354|gb|ABK95505.1| unknown [Populus trichocarpa] gi|222850125|gb|EEE87672.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|388496012|gb|AFK36072.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|388510466|gb|AFK43299.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|225427991|ref|XP_002277796.1| PREDICTED: actin-depolymerizing factor 5 [Vitis vinifera] gi|297744627|emb|CBI37889.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449458600|ref|XP_004147035.1| PREDICTED: actin-depolymerizing factor 5-like isoform 2 [Cucumis sativus] Back     alignment and taxonomy information
>gi|356538630|ref|XP_003537804.1| PREDICTED: actin-depolymerizing factor 5-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query160
TAIR|locus:2059861143 ADF5 "actin depolymerizing fac 0.85 0.951 0.845 3.9e-60
TAIR|locus:2131556141 ADF9 "actin depolymerizing fac 0.85 0.964 0.801 8.1e-60
TAIR|locus:2042546146 ADF6 "actin depolymerizing fac 0.893 0.979 0.615 1.2e-44
TAIR|locus:2198175140 ADF11 "actin depolymerizing fa 0.837 0.957 0.589 8.4e-42
TAIR|locus:2127073140 ADF8 "actin depolymerizing fac 0.837 0.957 0.582 8.4e-42
TAIR|locus:2168063139 ADF4 "actin depolymerizing fac 0.837 0.964 0.604 1.7e-41
TAIR|locus:2077122150 ADF1 "actin depolymerizing fac 0.843 0.9 0.592 2.8e-41
TAIR|locus:2168052139 ADF3 "actin depolymerizing fac 0.843 0.971 0.570 4.2e-40
TAIR|locus:2131879137 ADF7 "actin depolymerizing fac 0.831 0.970 0.585 5.3e-40
TAIR|locus:2077107137 ADF2 "actin depolymerizing fac 0.825 0.963 0.582 2.9e-39
TAIR|locus:2059861 ADF5 "actin depolymerizing factor 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 616 (221.9 bits), Expect = 3.9e-60, P = 3.9e-60
 Identities = 115/136 (84%), Positives = 125/136 (91%)

Query:    25 ATTGMWVADECKNSFMEMKWKKVHRYIVFKIDEKSKLVTVDKVGGAGEGYEDLAASLPDD 84
             ATTGM V DEC +SFM+MKWKKVHRYIVFKI+EKS+ VTVDKVGGAGE Y DL  SLP D
Sbjct:     8 ATTGMRVTDECTSSFMDMKWKKVHRYIVFKIEEKSRKVTVDKVGGAGESYHDLEDSLPVD 67

Query:    85 DCRYAVFDFDFVTVDNCRKSKIFFIAWAPTASRIRAKMLYATSKDGLRRVLDGIHYEVQA 144
             DCRYAVFDFDFVTVDNCRKSKIFFIAW+P AS+IRAK+LYATSKDGLRRVL+GIHYE+QA
Sbjct:    68 DCRYAVFDFDFVTVDNCRKSKIFFIAWSPEASKIRAKILYATSKDGLRRVLEGIHYELQA 127

Query:   145 TDPTEMGFDVIMDRAK 160
             TDPTEMGFD+I DRAK
Sbjct:   128 TDPTEMGFDIIQDRAK 143
GO:0003779 "actin binding" evidence=IEA
GO:0005622 "intracellular" evidence=IEA;ISS
GO:0005737 "cytoplasm" evidence=ISM
GO:0008150 "biological_process" evidence=ND
TAIR|locus:2131556 ADF9 "actin depolymerizing factor 9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2042546 ADF6 "actin depolymerizing factor 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2198175 ADF11 "actin depolymerizing factor 11" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2127073 ADF8 "actin depolymerizing factor 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2168063 ADF4 "actin depolymerizing factor 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077122 ADF1 "actin depolymerizing factor 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2168052 ADF3 "actin depolymerizing factor 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2131879 ADF7 "actin depolymerizing factor 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077107 ADF2 "actin depolymerizing factor 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P0CM06COFI_CRYNJNo assigned EC number0.34810.83120.9637yesno
Q9FVI2ADF1_PETHYNo assigned EC number0.60140.86250.9928N/Ano
Q9FVI1ADF2_PETHYNo assigned EC number0.56520.86250.9650N/Ano
Q6C0Y0COFI_YARLINo assigned EC number0.36090.81870.8562yesno
Q9HF97COFI_ZYGRONo assigned EC number0.34580.81870.9160yesno
Q03048COFI_YEASTNo assigned EC number0.35330.81870.9160yesno
O49606ADF9_ARATHNo assigned EC number0.79130.86870.9858nono
Q9ZNT3ADF5_ARATHNo assigned EC number0.84550.850.9510yesno
Q759P0COFI_ASHGONo assigned EC number0.33830.81870.9160yesno
P30175ADF_LILLONo assigned EC number0.58080.850.9784N/Ano
P45594CADF_DROMENo assigned EC number0.32620.81250.8783yesno
Q4I963COFI_GIBZENo assigned EC number0.33100.81250.8496yesno
P78929COFI_SCHPONo assigned EC number0.37120.81250.9489yesno
Q6BWX4COFI_DEBHANo assigned EC number0.33830.81870.9160yesno
Q43694ADF2_MAIZENo assigned EC number0.50350.86871.0N/Ano
Q6CQ22COFI_KLULANo assigned EC number0.35550.83120.9300yesno
Q10P87ADF5_ORYSJNo assigned EC number0.77940.850.9510yesno
Q6FV81COFI_CANGANo assigned EC number0.33080.81870.9160yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_Genewise1_v1.C_LG_IV1110
SubName- Full=Putative uncharacterized protein; (143 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query160
PLN03216141 PLN03216, PLN03216, actin depolymerizing factor; P 3e-98
cd11286133 cd11286, ADF_cofilin_like, Cofilin, Destrin, and r 2e-60
smart00102127 smart00102, ADF, Actin depolymerisation factor/cof 3e-49
pfam00241127 pfam00241, Cofilin_ADF, Cofilin/tropomyosin-type a 2e-45
cd0001397 cd00013, ADF_gelsolin, Actin depolymerization fact 7e-19
PTZ00152122 PTZ00152, PTZ00152, cofilin/actin-depolymerizing f 5e-17
cd11284132 cd11284, ADF_Twf-C_like, C-terminal ADF domain of 9e-12
cd11283122 cd11283, ADF_GMF-beta_like, ADF-homology domain of 3e-11
cd11285139 cd11285, ADF_Twf-N_like, N-terminal ADF domain of 9e-08
cd11282114 cd11282, ADF_coactosin_like, Coactosin-like member 4e-06
>gnl|CDD|178755 PLN03216, PLN03216, actin depolymerizing factor; Provisional Back     alignment and domain information 
 Score =  278 bits (713), Expect = 3e-98
 Identities = 124/136 (91%), Positives = 129/136 (94%)

Query: 25  ATTGMWVADECKNSFMEMKWKKVHRYIVFKIDEKSKLVTVDKVGGAGEGYEDLAASLPDD 84
           ATTGMWV DECKNSFMEMKWKKVHRYIVFKIDEKS+ VTVDKVGG GE Y+DLAASLP D
Sbjct: 6   ATTGMWVTDECKNSFMEMKWKKVHRYIVFKIDEKSRKVTVDKVGGPGESYDDLAASLPTD 65

Query: 85  DCRYAVFDFDFVTVDNCRKSKIFFIAWAPTASRIRAKMLYATSKDGLRRVLDGIHYEVQA 144
           DCRYAVFDFDFVTVDNCRKSKIFFIAW+P ASRIRAKMLYATSKDGLRRVLDG+HYE+QA
Sbjct: 66  DCRYAVFDFDFVTVDNCRKSKIFFIAWSPEASRIRAKMLYATSKDGLRRVLDGVHYELQA 125

Query: 145 TDPTEMGFDVIMDRAK 160
           TDPTEMGFDVI DRAK
Sbjct: 126 TDPTEMGFDVIRDRAK 141

Length = 141
>gnl|CDD|200442 cd11286, ADF_cofilin_like, Cofilin, Destrin, and related actin depolymerizing factors Back     alignment and domain information
>gnl|CDD|214516 smart00102, ADF, Actin depolymerisation factor/cofilin -like domains Back     alignment and domain information
>gnl|CDD|143992 pfam00241, Cofilin_ADF, Cofilin/tropomyosin-type actin-binding protein Back     alignment and domain information
>gnl|CDD|200435 cd00013, ADF_gelsolin, Actin depolymerization factor/cofilin- and gelsolin-like domains Back     alignment and domain information
>gnl|CDD|173441 PTZ00152, PTZ00152, cofilin/actin-depolymerizing factor 1-like protein; Provisional Back     alignment and domain information
>gnl|CDD|200440 cd11284, ADF_Twf-C_like, C-terminal ADF domain of twinfilin and related proteins Back     alignment and domain information
>gnl|CDD|200439 cd11283, ADF_GMF-beta_like, ADF-homology domain of glia maturation factor beta and related proteins Back     alignment and domain information
>gnl|CDD|200441 cd11285, ADF_Twf-N_like, N-terminal ADF domain of twinfilin and related proteins Back     alignment and domain information
>gnl|CDD|200438 cd11282, ADF_coactosin_like, Coactosin-like members of the ADF homology domain family Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 160
PLN03216141 actin depolymerizing factor; Provisional 100.0
cd00013132 ADF Actin depolymerisation factor/cofilin -like do 100.0
KOG1735146 consensus Actin depolymerizing factor [Cytoskeleto 100.0
PF00241127 Cofilin_ADF: Cofilin/tropomyosin-type actin-bindin 100.0
smart00102127 ADF Actin depolymerisation factor/cofilin -like do 100.0
PTZ00152122 cofilin/actin-depolymerizing factor 1-like protein 100.0
KOG1736143 consensus Glia maturation factor beta [Extracellul 99.94
KOG1747342 consensus Protein tyrosine kinase 9/actin monomer- 99.9
KOG1747 342 consensus Protein tyrosine kinase 9/actin monomer- 99.89
KOG3655 484 consensus Drebrins and related actin binding prote 99.74
>PLN03216 actin depolymerizing factor; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.7e-44  Score=268.58  Aligned_cols=137  Identities=91%  Similarity=1.439  Sum_probs=129.7

Q ss_pred             hcCcCcccCHHHHHHHHHhhccCCeeEEEEEEeCCCceEEEceecCCCCChHHHhhcCCCCCceEEEEEeeeeeCCCCcc
Q 031424           24 QATTGMWVADECKNSFMEMKWKKVHRYIVFKIDEKSKLVTVDKVGGAGEGYEDLAASLPDDDCRYAVFDFDFVTVDNCRK  103 (160)
Q Consensus        24 ~~~SGi~i~~e~~~a~~~lk~~~~~~~iif~I~~~~~~I~v~~~g~~~~~~~el~~~L~~~~pry~vy~~~~~~~~~~~~  103 (160)
                      |++|||+++++|.++|++|+.++.+|||+|+|++++++|+|++.+..+.+|+||++.||+++|||++||+++.+++|+.+
T Consensus         5 m~~SGi~v~~~c~~~f~~lk~~k~~r~iifkI~~~~~~ivv~~~~~~~~~~~d~~~~L~~~~~rY~vyd~~~~~~~g~~~   84 (141)
T PLN03216          5 MATTGMWVTDECKNSFMEMKWKKVHRYIVFKIDEKSRKVTVDKVGGPGESYDDLAASLPTDDCRYAVFDFDFVTVDNCRK   84 (141)
T ss_pred             ecCCCCeeCHHHHHHHHHHHhCCCceEEEEEEcCCCCEEEEEecCCCCCCHHHHHHhCCCCCCeEEEEEeEeccCCCCcc
Confidence            55899999999999999999887789999999998889999887655678999999999999999999999999999999


Q ss_pred             ccEEEEEEcCCCCCccchhhhhhcHHHHHHhcCCeeEEEEeCCCCCCCHHHHHhhhC
Q 031424          104 SKIFFIAWAPTASRIRAKMLYATSKDGLRRVLDGIHYEVQATDPTEMGFDVIMDRAK  160 (160)
Q Consensus       104 ~klvfI~w~Pd~a~vk~KMlYsssk~~lk~~l~gi~~~i~a~d~~dl~~~~i~~kl~  160 (160)
                      +|++||+|||++|++|.||+|||+|++|++.|+|+++++||+|.+||+++.+.+|++
T Consensus        85 ~klvFI~w~Pd~a~vk~KMlYAssK~~lk~~l~gi~~~iqatd~~el~~~~~~~~~~  141 (141)
T PLN03216         85 SKIFFIAWSPEASRIRAKMLYATSKDGLRRVLDGVHYELQATDPTEMGFDVIRDRAK  141 (141)
T ss_pred             cCEEEEEECCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEECChHhcCHHHHHHHhC
Confidence            999999999999999999999999999999999999999999999999999999974

>cd00013 ADF Actin depolymerisation factor/cofilin -like domains; present in a family of essential eukaryotic actin regulatory proteins; these proteins enhance the turnover rate of actin and interact with actin monomers as well as actin filaments Back     alignment and domain information
>KOG1735 consensus Actin depolymerizing factor [Cytoskeleton] Back     alignment and domain information
>PF00241 Cofilin_ADF: Cofilin/tropomyosin-type actin-binding protein; InterPro: IPR002108 The actin-depolymerising factor homology (ADF-H) domain is an ~150-amino acid motif that is present in three phylogenetically distinct classes of eukaryotic actin-binding proteins [, , ]: ADF/cofilins, which include ADF, cofilin, destrin, actophorin, coactosin, depactin and glia maturation factors (GMFs) beta and gamma Back     alignment and domain information
>smart00102 ADF Actin depolymerisation factor/cofilin -like domains Back     alignment and domain information
>PTZ00152 cofilin/actin-depolymerizing factor 1-like protein; Provisional Back     alignment and domain information
>KOG1736 consensus Glia maturation factor beta [Extracellular structures] Back     alignment and domain information
>KOG1747 consensus Protein tyrosine kinase 9/actin monomer-binding protein [Extracellular structures] Back     alignment and domain information
>KOG1747 consensus Protein tyrosine kinase 9/actin monomer-binding protein [Extracellular structures] Back     alignment and domain information
>KOG3655 consensus Drebrins and related actin binding proteins [Cytoskeleton] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query160
1f7s_A139 Crystal Structure Of Adf1 From Arabidopsis Thaliana 2e-45
1ahq_A137 Recombinant Actophorin Length = 137 2e-31
1cnu_A137 Phosphorylated Actophorin From Acantamoeba Polyphag 3e-31
2i2q_A137 Fission Yeast Cofilin Length = 137 3e-24
1cfy_A143 Yeast Cofilin, Monoclinic Crystal Form Length = 143 3e-23
1ak6_A174 Destrin, Nmr, Minimized Average Structure Length = 3e-16
1q8g_A166 Nmr Structure Of Human Cofilin Length = 166 1e-14
2xfa_A148 Crystal Structure Of Plasmodium Berghei Actin Depol 3e-14
2lj8_A144 Solution Structure Of AdfCOFILIN FROM TRYPANOSOMA B 3e-14
1tvj_A166 Solution Structure Of Chick Cofilin Length = 166 2e-13
2l72_A139 Solution Structure And Dynamics Of Adf From Toxopla 2e-13
2kvk_A144 Solution Structure Of AdfCOFILIN (LDCOF) FROM LEISH 2e-10
3q2b_A124 Crystal Structure Of An Actin Depolymerizing Factor 8e-07
2xf1_A124 Crystal Structure Of Plasmodium Falciparum Actin De 1e-06
1m4j_A142 Crystal Structure Of The N-Terminal Adf-H Domain Of 7e-05
1vkk_A154 Crystal Structure Of Glia Maturation Factor-Gamma ( 8e-04
3l50_A136 The Crystal Structure Of Human Glia Maturation Fact 9e-04
1wfs_A151 Solution Structure Of Glia Maturation Factor-Gamma 9e-04
>pdb|1F7S|A Chain A, Crystal Structure Of Adf1 From Arabidopsis Thaliana Length = 139 Back     alignment and structure 
Iteration: 1

 Score =  177 bits (450), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 80/138 (57%), Positives = 105/138 (76%)
Query: 22  LFQATTGMWVADECKNSFMEMKWKKVHRYIVFKIDEKSKLVTVDKVGGAGEGYEDLAASL 81
           +  A +GM V D+CK  F+E+K K+ HR+IV+KI+EK K V V+KVG   + YE+ AA L
Sbjct: 1   MANAASGMAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVVVEKVGQPIQTYEEFAACL 60
Query: 82  PDDDCRYAVFDFDFVTVDNCRKSKIFFIAWAPTASRIRAKMLYATSKDGLRRVLDGIHYE 141
           P D+CRYA++DFDFVT +NC+KSKIFFIAW P  +++R+KM+YA+SKD  +R LDGI  E
Sbjct: 61  PADECRYAIYDFDFVTAENCQKSKIFFIAWCPDIAKVRSKMIYASSKDRFKRELDGIQVE 120
Query: 142 VQATDPTEMGFDVIMDRA 159
           +QATDPTEM  DV   RA
Sbjct: 121 LQATDPTEMDLDVFRSRA 138
>pdb|1AHQ|A Chain A, Recombinant Actophorin Length = 137 Back     alignment and structure
>pdb|1CNU|A Chain A, Phosphorylated Actophorin From Acantamoeba Polyphaga Length = 137 Back     alignment and structure
>pdb|2I2Q|A Chain A, Fission Yeast Cofilin Length = 137 Back     alignment and structure
>pdb|1CFY|A Chain A, Yeast Cofilin, Monoclinic Crystal Form Length = 143 Back     alignment and structure
>pdb|1AK6|A Chain A, Destrin, Nmr, Minimized Average Structure Length = 174 Back     alignment and structure
>pdb|1Q8G|A Chain A, Nmr Structure Of Human Cofilin Length = 166 Back     alignment and structure
>pdb|2XFA|A Chain A, Crystal Structure Of Plasmodium Berghei Actin Depolymerization Factor 2 Length = 148 Back     alignment and structure
>pdb|2LJ8|A Chain A, Solution Structure Of AdfCOFILIN FROM TRYPANOSOMA BRUCEI Length = 144 Back     alignment and structure
>pdb|1TVJ|A Chain A, Solution Structure Of Chick Cofilin Length = 166 Back     alignment and structure
>pdb|2L72|A Chain A, Solution Structure And Dynamics Of Adf From Toxoplasma Gondii (Tgadf) Length = 139 Back     alignment and structure
>pdb|2KVK|A Chain A, Solution Structure Of AdfCOFILIN (LDCOF) FROM LEISHMANIA DONOVANI Length = 144 Back     alignment and structure
>pdb|3Q2B|A Chain A, Crystal Structure Of An Actin Depolymerizing Factor Length = 124 Back     alignment and structure
>pdb|1M4J|A Chain A, Crystal Structure Of The N-Terminal Adf-H Domain Of Mouse Twinfilin Isoform-1 Length = 142 Back     alignment and structure
>pdb|1VKK|A Chain A, Crystal Structure Of Glia Maturation Factor-Gamma (Gmfg) From Mus Musculus At 1.50 A Resolution Length = 154 Back     alignment and structure
>pdb|3L50|A Chain A, The Crystal Structure Of Human Glia Maturation Factor, Gamma (Gmfg) Length = 136 Back     alignment and structure
>pdb|1WFS|A Chain A, Solution Structure Of Glia Maturation Factor-Gamma From Mus Musculus Length = 151 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query160
1f7s_A139 Actin depolymerizing factor (ADF); KINK in alpha-h 2e-50
1cnu_A137 Actophorin, ADF, cofilin; actin-binding protein, c 1e-47
2i2q_A137 Cofilin; N-terminal serine, actin-binding protein; 2e-44
1cfy_A143 Cofilin; actin-binding, cytoskeleton, actin-bindin 4e-44
2kd5_A144 ADF H, actin severing and dynamics regulatory prot 4e-44
2xfa_A148 Actin depolymerization factor 2; actin binding pro 4e-43
1ak6_A174 Destrin; actin depolymerization factor, actin-bind 5e-39
3q2b_A124 Pfadf1, cofilin/actin-depolymerizing factor homolo 7e-39
2l72_A139 Tgadf, actin depolymerizing factor, putative; ADF/ 8e-39
1tvj_A166 Cofilin; ADF, actin binding protein, actin depolym 4e-38
1v6f_A151 MGMF-beta, GLIA maturation factor, beta; actin bin 2e-36
1vkk_A154 GMF-gamma, GLIA maturation factor gamma; 15079298, 2e-36
3daw_B164 Twinfilin-1, protein A6; actin depolymerisation, a 3e-36
2vac_A134 Twinfilin-2; transferase, actin binding, phosphory 3e-35
2w0i_A135 Twinfilin-2; cytoskeleton, actin-binding, actin bi 1e-34
2d8b_A166 Twinfilin-1; cell-free protein synthesis, actin-bi 9e-34
1m4j_A142 A6 gene product, twinfilin; mixed beta-sheet, PAIR 4e-33
1x67_A146 Drebrin-like protein; cell-free protein synthesis, 2e-26
1hqz_1141 ABP1P, actin-binding protein; cofilin homology dom 3e-26
1t3y_A141 Coactosin-like protein; beta sheet, protein bindin 4e-20
>1f7s_A Actin depolymerizing factor (ADF); KINK in alpha-helix 3, plant protein; HET: LDA; 2.00A {Arabidopsis thaliana} SCOP: d.109.1.2 Length = 139 Back     alignment and structure
 Score =  157 bits (398), Expect = 2e-50
 Identities = 80/138 (57%), Positives = 105/138 (76%)

Query: 22  LFQATTGMWVADECKNSFMEMKWKKVHRYIVFKIDEKSKLVTVDKVGGAGEGYEDLAASL 81
           +  A +GM V D+CK  F+E+K K+ HR+IV+KI+EK K V V+KVG   + YE+ AA L
Sbjct: 1   MANAASGMAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVVVEKVGQPIQTYEEFAACL 60

Query: 82  PDDDCRYAVFDFDFVTVDNCRKSKIFFIAWAPTASRIRAKMLYATSKDGLRRVLDGIHYE 141
           P D+CRYA++DFDFVT +NC+KSKIFFIAW P  +++R+KM+YA+SKD  +R LDGI  E
Sbjct: 61  PADECRYAIYDFDFVTAENCQKSKIFFIAWCPDIAKVRSKMIYASSKDRFKRELDGIQVE 120

Query: 142 VQATDPTEMGFDVIMDRA 159
           +QATDPTEM  DV   RA
Sbjct: 121 LQATDPTEMDLDVFRSRA 138
>1cnu_A Actophorin, ADF, cofilin; actin-binding protein, contractIle; 2.25A {Acanthamoeba polyphaga} SCOP: d.109.1.2 PDB: 1ahq_A Length = 137 Back     alignment and structure
>2i2q_A Cofilin; N-terminal serine, actin-binding protein; HET: LDA; 1.72A {Schizosaccharomyces pombe} Length = 137 Back     alignment and structure
>1cfy_A Cofilin; actin-binding, cytoskeleton, actin-binding protein; 2.30A {Saccharomyces cerevisiae} SCOP: d.109.1.2 PDB: 1cof_A 1qpv_A Length = 143 Back     alignment and structure
>2xfa_A Actin depolymerization factor 2; actin binding protein, protein binding; 2.10A {Plasmodium berghei} Length = 148 Back     alignment and structure
>1ak6_A Destrin; actin depolymerization factor, actin-binding protein; NMR {Homo sapiens} SCOP: d.109.1.2 PDB: 1ak7_A 1q8g_A 1q8x_A 3j0s_M Length = 174 Back     alignment and structure
>3q2b_A Pfadf1, cofilin/actin-depolymerizing factor homolog 1; actin regulator, actin-binding protein; HET: TAR; 1.60A {Plasmodium falciparum} PDB: 2xf1_A Length = 124 Back     alignment and structure
>2l72_A Tgadf, actin depolymerizing factor, putative; ADF/cofilin, actin binding, protein binding; NMR {Toxoplasma gondii} Length = 139 Back     alignment and structure
>1tvj_A Cofilin; ADF, actin binding protein, actin depolymerizing factor, actin-binding protein; NMR {Gallus gallus} Length = 166 Back     alignment and structure
>1v6f_A MGMF-beta, GLIA maturation factor, beta; actin binding protein, cytoskeleton, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.109.1.2 Length = 151 Back     alignment and structure
>1vkk_A GMF-gamma, GLIA maturation factor gamma; 15079298, structural GEN JCSG, protein structure initiative, PSI, joint center for S genomics; 1.35A {Mus musculus} SCOP: d.109.1.2 PDB: 1wfs_A 3l50_A Length = 154 Back     alignment and structure
>3daw_B Twinfilin-1, protein A6; actin depolymerisation, actin binding proteins, cytoskeleton, structural protein/contractIle protein complex; HET: ATP; 2.55A {Mus musculus} PDB: 2hd7_A Length = 164 Back     alignment and structure
>2vac_A Twinfilin-2; transferase, actin binding, phosphorylation, cofilin-like, cytoskeleton, actin-binding, protein tyrosine kinase-9; 1.70A {Homo sapiens} Length = 134 Back     alignment and structure
>2w0i_A Twinfilin-2; cytoskeleton, actin-binding, actin binding, cofilin-like, phosphoprotein, phosphorylation, transferase, protein tyros kinase-9; 1.8A {Homo sapiens} Length = 135 Back     alignment and structure
>2d8b_A Twinfilin-1; cell-free protein synthesis, actin-binding protein, developmental regulation, cellular remodeling, cytoskeleton, morphology; NMR {Mus musculus} Length = 166 Back     alignment and structure
>1m4j_A A6 gene product, twinfilin; mixed beta-sheet, PAIR of alpha-helices, structural protein; 1.60A {Mus musculus} SCOP: d.109.1.2 Length = 142 Back     alignment and structure
>1x67_A Drebrin-like protein; cell-free protein synthesis, actin-binding protein, SH3P7, MABP1, T-cell lymphocyte signaling and regulation; NMR {Homo sapiens} Length = 146 Back     alignment and structure
>1hqz_1 ABP1P, actin-binding protein; cofilin homology domain, NEW YORK SGX researc for structural genomics, NYSGXRC, structural genomics, PSI; 2.10A {Saccharomyces cerevisiae} SCOP: d.109.1.2 Length = 141 Back     alignment and structure
>1t3y_A Coactosin-like protein; beta sheet, protein binding; 1.15A {Homo sapiens} SCOP: d.109.1.2 PDB: 1t2l_A 1t3x_A 1vfq_A 1tmw_A 1wnj_A 1udm_A 1wm4_A Length = 141 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query160
1f7s_A139 Actin depolymerizing factor (ADF); KINK in alpha-h 100.0
2i2q_A137 Cofilin; N-terminal serine, actin-binding protein; 100.0
1cfy_A143 Cofilin; actin-binding, cytoskeleton, actin-bindin 100.0
2xfa_A148 Actin depolymerization factor 2; actin binding pro 100.0
2kvk_A144 Actin severing and dynamics regulatory protein; AD 100.0
1cnu_A137 Actophorin, ADF, cofilin; actin-binding protein, c 100.0
2lj8_A144 Cofilin/actin depolymerizing factor, putative; pro 100.0
2kd5_A144 ADF H, actin severing and dynamics regulatory prot 100.0
1vkk_A154 GMF-gamma, GLIA maturation factor gamma; 15079298, 100.0
1tvj_A166 Cofilin; ADF, actin binding protein, actin depolym 100.0
1ak6_A174 Destrin; actin depolymerization factor, actin-bind 100.0
1m4j_A142 A6 gene product, twinfilin; mixed beta-sheet, PAIR 100.0
1v6f_A151 MGMF-beta, GLIA maturation factor, beta; actin bin 100.0
2w0i_A135 Twinfilin-2; cytoskeleton, actin-binding, actin bi 100.0
2d8b_A166 Twinfilin-1; cell-free protein synthesis, actin-bi 100.0
2vac_A134 Twinfilin-2; transferase, actin binding, phosphory 100.0
1hqz_1141 ABP1P, actin-binding protein; cofilin homology dom 100.0
3daw_B164 Twinfilin-1, protein A6; actin depolymerisation, a 100.0
3q2b_A124 Pfadf1, cofilin/actin-depolymerizing factor homolo 100.0
2l72_A139 Tgadf, actin depolymerizing factor, putative; ADF/ 100.0
1x67_A146 Drebrin-like protein; cell-free protein synthesis, 100.0
1t3y_A141 Coactosin-like protein; beta sheet, protein bindin 100.0
>1f7s_A Actin depolymerizing factor (ADF); KINK in alpha-helix 3, plant protein; HET: LDA; 2.00A {Arabidopsis thaliana} SCOP: d.109.1.2 Back     alignment and structure
Probab=100.00  E-value=7.7e-44  Score=262.80  Aligned_cols=139  Identities=58%  Similarity=1.014  Sum_probs=118.9

Q ss_pred             hhhcCcCcccCHHHHHHHHHhhccCCeeEEEEEEeCCCceEEEceecCCCCChHHHhhcCCCCCceEEEEEeeeeeCCCC
Q 031424           22 LFQATTGMWVADECKNSFMEMKWKKVHRYIVFKIDEKSKLVTVDKVGGAGEGYEDLAASLPDDDCRYAVFDFDFVTVDNC  101 (160)
Q Consensus        22 ~~~~~SGi~i~~e~~~a~~~lk~~~~~~~iif~I~~~~~~I~v~~~g~~~~~~~el~~~L~~~~pry~vy~~~~~~~~~~  101 (160)
                      |+|++|||.+++||.++|++++.++.+||++|+|++++++|+++++|+...+|++|.+.||+++|||++||+++++.+|+
T Consensus         1 ~~~~~sGi~v~~e~~~af~~~~~~~~~~~ii~~i~~~~~~i~v~~~g~~~~~~~el~~~L~~~~~rY~~~~~~~~~~~~~   80 (139)
T 1f7s_A            1 MANAASGMAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVVVEKVGQPIQTYEEFAACLPADECRYAIYDFDFVTAENC   80 (139)
T ss_dssp             ----CCCCEECHHHHHHHHHHHHHCCCSEEEEEEETTTTEEEEEEECCSSCCHHHHHTTSCTTSCEEEEEEEEEECTTSC
T ss_pred             CCcCccCcEeCHHHHHHHHHHHcCCCcEEEEEEECCCCcEEEEEeecCCCCCHHHHHHhCCCCCceEEEEEeeeeccccC
Confidence            56789999999999999999999767999999999988899999988765689999999999999999999999999999


Q ss_pred             ccccEEEEEEcCCCCCccchhhhhhcHHHHHHhcCCeeEEEEeCCCCCCCHHHHHhhhC
Q 031424          102 RKSKIFFIAWAPTASRIRAKMLYATSKDGLRRVLDGIHYEVQATDPTEMGFDVIMDRAK  160 (160)
Q Consensus       102 ~~~klvfI~w~Pd~a~vk~KMlYsssk~~lk~~l~gi~~~i~a~d~~dl~~~~i~~kl~  160 (160)
                      .++|++||+|||++|++|+||+|||+|++|++.|+|++.+|||+|++||+++.|++|++
T Consensus        81 ~~~k~vfI~w~P~~a~v~~KmlyAssk~~l~~~l~g~~v~i~a~d~~el~~~~i~~~~~  139 (139)
T 1f7s_A           81 QKSKIFFIAWCPDIAKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMDLDVFRSRAN  139 (139)
T ss_dssp             EEEEEEEEEECCTTSCHHHHHHHHHHHHHHHTTCTTCCEEEEECCTTC-----------
T ss_pred             cccCEEEEEECCCCCChhHheehHHhHHHHHHhcCCeEEEEEECChHHCCHHHHHHhhC
Confidence            99999999999999999999999999999999999999999999999999999999975
>2i2q_A Cofilin; N-terminal serine, actin-binding protein; HET: LDA; 1.72A {Schizosaccharomyces pombe} Back     alignment and structure
>1cfy_A Cofilin; actin-binding, cytoskeleton, actin-binding protein; 2.30A {Saccharomyces cerevisiae} SCOP: d.109.1.2 PDB: 1cof_A 1qpv_A Back     alignment and structure
>2xfa_A Actin depolymerization factor 2; actin binding protein, protein binding; 2.10A {Plasmodium berghei} Back     alignment and structure
>2kvk_A Actin severing and dynamics regulatory protein; ADF/cofilin, hormone; NMR {Leishmania donovani} Back     alignment and structure
>1cnu_A Actophorin, ADF, cofilin; actin-binding protein, contractIle; 2.25A {Acanthamoeba polyphaga} SCOP: d.109.1.2 PDB: 1ahq_A Back     alignment and structure
>2lj8_A Cofilin/actin depolymerizing factor, putative; protein binding; NMR {Trypanosoma brucei} Back     alignment and structure
>1vkk_A GMF-gamma, GLIA maturation factor gamma; 15079298, structural GEN JCSG, protein structure initiative, PSI, joint center for S genomics; 1.35A {Mus musculus} SCOP: d.109.1.2 PDB: 1wfs_A 3l50_A Back     alignment and structure
>1tvj_A Cofilin; ADF, actin binding protein, actin depolymerizing factor, actin-binding protein; NMR {Gallus gallus} Back     alignment and structure
>1ak6_A Destrin; actin depolymerization factor, actin-binding protein; NMR {Homo sapiens} SCOP: d.109.1.2 PDB: 1ak7_A 1q8g_A 1q8x_A 3j0s_M Back     alignment and structure
>1m4j_A A6 gene product, twinfilin; mixed beta-sheet, PAIR of alpha-helices, structural protein; 1.60A {Mus musculus} SCOP: d.109.1.2 Back     alignment and structure
>1v6f_A MGMF-beta, GLIA maturation factor, beta; actin binding protein, cytoskeleton, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.109.1.2 Back     alignment and structure
>2w0i_A Twinfilin-2; cytoskeleton, actin-binding, actin binding, cofilin-like, phosphoprotein, phosphorylation, transferase, protein tyros kinase-9; 1.8A {Homo sapiens} Back     alignment and structure
>2d8b_A Twinfilin-1; cell-free protein synthesis, actin-binding protein, developmental regulation, cellular remodeling, cytoskeleton, morphology; NMR {Mus musculus} Back     alignment and structure
>2vac_A Twinfilin-2; transferase, actin binding, phosphorylation, cofilin-like, cytoskeleton, actin-binding, protein tyrosine kinase-9; 1.70A {Homo sapiens} Back     alignment and structure
>1hqz_1 ABP1P, actin-binding protein; cofilin homology domain, NEW YORK SGX researc for structural genomics, NYSGXRC, structural genomics, PSI; 2.10A {Saccharomyces cerevisiae} SCOP: d.109.1.2 Back     alignment and structure
>3daw_B Twinfilin-1, protein A6; actin depolymerisation, actin binding proteins, cytoskeleton, structural protein/contractIle protein complex; HET: ATP; 2.55A {Mus musculus} PDB: 2hd7_A Back     alignment and structure
>3q2b_A Pfadf1, cofilin/actin-depolymerizing factor homolog 1; actin regulator, actin-binding protein; HET: TAR; 1.60A {Plasmodium falciparum} PDB: 2xf1_A Back     alignment and structure
>2l72_A Tgadf, actin depolymerizing factor, putative; ADF/cofilin, actin binding, protein binding; NMR {Toxoplasma gondii} Back     alignment and structure
>1x67_A Drebrin-like protein; cell-free protein synthesis, actin-binding protein, SH3P7, MABP1, T-cell lymphocyte signaling and regulation; NMR {Homo sapiens} Back     alignment and structure
>1t3y_A Coactosin-like protein; beta sheet, protein binding; 1.15A {Homo sapiens} SCOP: d.109.1.2 PDB: 1t2l_A 1t3x_A 1vfq_A 1tmw_A 1wnj_A 1udm_A 1wm4_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 160
d1f7sa_124 d.109.1.2 (A:) Cofilin (actin depolymerizing facto 9e-50
d1cnua_134 d.109.1.2 (A:) Cofilin (actin depolymerizing facto 1e-47
d1cfya_133 d.109.1.2 (A:) Cofilin (actin depolymerizing facto 4e-42
d1ak7a_174 d.109.1.2 (A:) Destrin {Human and pig (Homo sapien 4e-41
d1q8ga_166 d.109.1.2 (A:) Cofilin (actin depolymerizing facto 3e-37
d1vkka_137 d.109.1.2 (A:) Glia maturation factor gamma, GMF-g 3e-37
d1t3ya1130 d.109.1.2 (A:2-131) Coactosin-like protein Cotl1 ( 2e-30
d1m4ja_133 d.109.1.2 (A:) Adf-H domain of twinfilin isoform-1 3e-30
d1hqz1_139 d.109.1.2 (1:) Cofilin-like domain of actin-bindin 6e-27
>d1f7sa_ d.109.1.2 (A:) Cofilin (actin depolymerizing factor, ADF) {Plant (Arabidopsis thaliana), ADF1 [TaxId: 3702]} Length = 124 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Gelsolin-like
superfamily: Actin depolymerizing proteins
family: Cofilin-like
domain: Cofilin (actin depolymerizing factor, ADF)
species: Plant (Arabidopsis thaliana), ADF1 [TaxId: 3702]

 Score =  153 bits (389), Expect = 9e-50
 Identities = 74/122 (60%), Positives = 97/122 (79%)

Query: 28  GMWVADECKNSFMEMKWKKVHRYIVFKIDEKSKLVTVDKVGGAGEGYEDLAASLPDDDCR 87
           GM V D+CK  F+E+K K+ HR+IV+KI+EK K V V+KVG   + YE+ AA LP D+CR
Sbjct: 3   GMAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVVVEKVGQPIQTYEEFAACLPADECR 62

Query: 88  YAVFDFDFVTVDNCRKSKIFFIAWAPTASRIRAKMLYATSKDGLRRVLDGIHYEVQATDP 147
           YA++DFDFVT +NC+KSKIFFIAW P  +++R+KM+YA+SKD  +R LDGI  E+QATDP
Sbjct: 63  YAIYDFDFVTAENCQKSKIFFIAWCPDIAKVRSKMIYASSKDRFKRELDGIQVELQATDP 122

Query: 148 TE 149
           TE
Sbjct: 123 TE 124
>d1cnua_ d.109.1.2 (A:) Cofilin (actin depolymerizing factor, ADF) {Acanthamoeba castellanii, actophorin [TaxId: 5755]} Length = 134 Back     information, alignment and structure
>d1cfya_ d.109.1.2 (A:) Cofilin (actin depolymerizing factor, ADF) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 133 Back     information, alignment and structure
>d1ak7a_ d.109.1.2 (A:) Destrin {Human and pig (Homo sapiens) and (Sus scrofa) [TaxId: 9606]} Length = 174 Back     information, alignment and structure
>d1q8ga_ d.109.1.2 (A:) Cofilin (actin depolymerizing factor, ADF) {Human (Homo sapiens), non-muscle isoform [TaxId: 9606]} Length = 166 Back     information, alignment and structure
>d1vkka_ d.109.1.2 (A:) Glia maturation factor gamma, GMF-gamma {Mouse (Mus musculus) [TaxId: 10090]} Length = 137 Back     information, alignment and structure
>d1t3ya1 d.109.1.2 (A:2-131) Coactosin-like protein Cotl1 (Clp) {Human (Homo sapiens) [TaxId: 9606]} Length = 130 Back     information, alignment and structure
>d1m4ja_ d.109.1.2 (A:) Adf-H domain of twinfilin isoform-1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 133 Back     information, alignment and structure
>d1hqz1_ d.109.1.2 (1:) Cofilin-like domain of actin-binding protein abp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 139 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query160
d1f7sa_124 Cofilin (actin depolymerizing factor, ADF) {Plant 100.0
d1cnua_134 Cofilin (actin depolymerizing factor, ADF) {Acanth 100.0
d1cfya_133 Cofilin (actin depolymerizing factor, ADF) {Baker' 100.0
d1vkka_137 Glia maturation factor gamma, GMF-gamma {Mouse (Mu 100.0
d1ak7a_174 Destrin {Human and pig (Homo sapiens) and (Sus scr 100.0
d1q8ga_166 Cofilin (actin depolymerizing factor, ADF) {Human 100.0
d1m4ja_133 Adf-H domain of twinfilin isoform-1 {Mouse (Mus mu 100.0
d1t3ya1130 Coactosin-like protein Cotl1 (Clp) {Human (Homo sa 99.98
d1hqz1_139 Cofilin-like domain of actin-binding protein abp1p 99.97
>d1f7sa_ d.109.1.2 (A:) Cofilin (actin depolymerizing factor, ADF) {Plant (Arabidopsis thaliana), ADF1 [TaxId: 3702]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Gelsolin-like
superfamily: Actin depolymerizing proteins
family: Cofilin-like
domain: Cofilin (actin depolymerizing factor, ADF)
species: Plant (Arabidopsis thaliana), ADF1 [TaxId: 3702]

Probab=100.00  E-value=3.9e-41  Score=242.30  Aligned_cols=124  Identities=60%  Similarity=1.067  Sum_probs=119.0

Q ss_pred             CcCcccCHHHHHHHHHhhccCCeeEEEEEEeCCCceEEEceecCCCCChHHHhhcCCCCCceEEEEEeeeeeCCCCcccc
Q 031424           26 TTGMWVADECKNSFMEMKWKKVHRYIVFKIDEKSKLVTVDKVGGAGEGYEDLAASLPDDDCRYAVFDFDFVTVDNCRKSK  105 (160)
Q Consensus        26 ~SGi~i~~e~~~a~~~lk~~~~~~~iif~I~~~~~~I~v~~~g~~~~~~~el~~~L~~~~pry~vy~~~~~~~~~~~~~k  105 (160)
                      +|||+++|||+++|++||.++.+||++|+|++++++|++++++....+|++|.+.||+++|||++|++.+.+.+|+.++|
T Consensus         1 aSGi~v~de~~~~f~~lk~~~~~~~vi~~i~~~~~~i~v~~~~~~~~~~~~~~~~l~~~~~ry~~~~~~~~~~~~~~~~k   80 (124)
T d1f7sa_           1 ASGMAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVVVEKVGQPIQTYEEFAACLPADECRYAIYDFDFVTAENCQKSK   80 (124)
T ss_dssp             CCCCEECHHHHHHHHHHHHHCCCSEEEEEEETTTTEEEEEEECCSSCCHHHHHTTSCTTSCEEEEEEEEEECTTSCEEEE
T ss_pred             CCCeEeCHHHHHHHHHHhcCCCceEEEEEEeCCCcEEEEEecCCCCCCHHHHHHhCCcCCceEEEEEEEEecCCCCcccc
Confidence            58999999999999999998889999999999988999999987777999999999999999999999999999999999


Q ss_pred             EEEEEEcCCCCCccchhhhhhcHHHHHHhcCCeeEEEEeCCCCC
Q 031424          106 IFFIAWAPTASRIRAKMLYATSKDGLRRVLDGIHYEVQATDPTE  149 (160)
Q Consensus       106 lvfI~w~Pd~a~vk~KMlYsssk~~lk~~l~gi~~~i~a~d~~d  149 (160)
                      ++||+|||++|++|.||+|||+|++|++.|+|+++++||+|++|
T Consensus        81 ~vfI~w~Pd~a~vk~KMlyAssk~~l~~~l~gi~~~i~a~d~~E  124 (124)
T d1f7sa_          81 IFFIAWCPDIAKVRSKMIYASSKDRFKRELDGIQVELQATDPTE  124 (124)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHHHHTTCTTCCEEEEECCTTC
T ss_pred             EEEEEECCCCCCHhHeeeeHhHHHHHHHHhcCccEEEEeCCCCC
Confidence            99999999999999999999999999999999999999999987
>d1cnua_ d.109.1.2 (A:) Cofilin (actin depolymerizing factor, ADF) {Acanthamoeba castellanii, actophorin [TaxId: 5755]} Back     information, alignment and structure
>d1cfya_ d.109.1.2 (A:) Cofilin (actin depolymerizing factor, ADF) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1vkka_ d.109.1.2 (A:) Glia maturation factor gamma, GMF-gamma {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ak7a_ d.109.1.2 (A:) Destrin {Human and pig (Homo sapiens) and (Sus scrofa) [TaxId: 9606]} Back     information, alignment and structure
>d1q8ga_ d.109.1.2 (A:) Cofilin (actin depolymerizing factor, ADF) {Human (Homo sapiens), non-muscle isoform [TaxId: 9606]} Back     information, alignment and structure
>d1m4ja_ d.109.1.2 (A:) Adf-H domain of twinfilin isoform-1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1t3ya1 d.109.1.2 (A:2-131) Coactosin-like protein Cotl1 (Clp) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hqz1_ d.109.1.2 (1:) Cofilin-like domain of actin-binding protein abp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure