Citrus Sinensis ID: 031431

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------16
Protein Sequence
MGVVTYESEETYAVPPARMFNALASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQVKYAKHKIEEEDKVNLKLKYSVIEGNDLADYKLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQANPDVCN
Secondary Structure (PSIPRED)
cccEEEEEEEEEcccHHHHHHHHHcccccccccccccccEEEEccccccccEEEEEEEccccEEEEEEEEEEEEccccEEEEEEEEEcccccccEEEEEEEEEEEEccccccEEEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEccccccccHHHHHHHccHHHHHHHHccccccEEEEEEcccccccEEEEEccccccccEEEEEEEEEEccccEEEEEEEEEcccEcccEEEEEEEEEEEEcccccEEEEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
mgvvtyeseetyavpparmfnalasdnlpskifpdVVKNVEVlegnggpgsikkftiVEGGQVKYAKHKIEEEDKVNLKLKYSVIegndladyklekisfehqwraspnggsiCKTICKLHAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQANPDVCN
Flexible Loop (DISEMBL)
mgvvtyeseetyavppARMFNALASDNLPSKIFPDVVKNVEVLegnggpgsikkftiVEGGQVKYAkhkieeedkvnlkLKYSVIEGNDLADYKLEKISFEHqwraspnggSICKTICKLHAKGEVEVTeeqakagkervlGVVKGVEaylqanpdvcn
Low Complexity Region (SEG)
MGVVTYESEETYAVPPARMFNALASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQVKYAKHKIEEEDKVNLKLKYSVIEGNDLADYKLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQANPDVCN
Disordered region (IsUnstruct)
****************ARMFNALASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQVKYAKHKIEEEDKVNLKLKYSVIEGNDLADYKLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVT******GKERVLGVVKGVEAYLQ*******
Disordered Region (DISOPRED)
*GVVTYESEETYAVPPARMFNALASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQVKYAKHKIEEEDKVNLKLKYSVIEGNDLADYKLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQANP****
Disordered Region (DISEMBL)
*********ETYAVPPARMFNALASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQVKYAKHKIEEEDKVNLKLKYSVIEGNDLADYKLEKISFEHQWRASPNGGSICKTICKLHAKGE**********GKERVLGVVKGVEAYLQANPDVCN
Disordered Region (DISPRO)
*GVVTYESEETYAVPPARMFNALASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQVKYAKHKIEEEDKVNLKLKYSVIEGNDLADYKLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQANPD***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGVVTYESEETYAVPPARMFNALASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQVKYAKHKIEEEDKVNLKLKYSVIEGNDLADYKLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQANPDVCN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	159	2.2.26 [Sep-21-2011]
O24248	160	Major allergen Pru av 1 O	N/A	no	0.993	0.987	0.521	1e-39
O50001	160	Major allergen Pru ar 1 O	N/A	no	0.993	0.987	0.515	3e-39
Q40280	159	Major allergen Mal d 1 OS	N/A	no	0.987	0.987	0.490	8e-37
O65200	159	Major allergen Pyr c 1 OS	N/A	no	0.987	0.987	0.465	3e-35
P43211	159	Major allergen Mal d 1 OS	N/A	no	0.987	0.987	0.465	2e-34
Q43560	157	Class-10 pathogenesis-rel	N/A	no	0.968	0.980	0.468	5e-33
P38948	160	Major pollen allergen Aln	N/A	no	0.993	0.987	0.472	7e-33
P43183	160	Major pollen allergen Bet	N/A	no	0.993	0.987	0.490	8e-33
P15494	160	Major pollen allergen Bet	N/A	no	0.993	0.987	0.484	1e-32
P43178	160	Major pollen allergen Bet	N/A	no	0.993	0.987	0.490	2e-32

>sp|O24248|PRU1_PRUAV Major allergen Pru av 1 OS=Prunus avium GN=PRUA1 PE=1 SV=1

 Score =  161 bits (408), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 84/161 (52%), Positives = 106/161 (65%), Gaps = 3/161 (1%)

Query: 1   MGVVTYESEETYAVPPARMFNA--LASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIV 58
           MGV TYESE T  +PP R+F A  L +DNL  KI P  +K+ E+LEG+GGPG+IKK T  
Sbjct: 1   MGVFTYESEFTSEIPPPRLFKAFVLDADNLVPKIAPQAIKHSEILEGDGGPGTIKKITFG 60

Query: 59  EGGQVKYAKHKIEEEDKVNLKLKYSVIEGNDLADYKLEKISFEHQWRASPNGGSICKTIC 118
           EG Q  Y KHKI+  DK N    Y++IEG+ L D  LEKIS+E +  ASP+GGSI K+  
Sbjct: 61  EGSQYGYVKHKIDSIDKENYSYSYTLIEGDALGD-TLEKISYETKLVASPSGGSIIKSTS 119

Query: 119 KLHAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQANPDVCN 159
             H KG VE+ EE  KAGKE+   + K +E YL+ +PD  N
Sbjct: 120 HYHTKGNVEIKEEHVKAGKEKASNLFKLIETYLKGHPDAYN 160

Prunus avium (taxid: 42229)

>sp|O50001|PRU1_PRUAR Major allergen Pru ar 1 OS=Prunus armeniaca PE=1 SV=1

 Score =  160 bits (405), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 83/161 (51%), Positives = 109/161 (67%), Gaps = 3/161 (1%)

Query: 1   MGVVTYESEETYAVPPARMFNA--LASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIV 58
           MGV TYE+E T  +PP ++F A  L +DNL  K+ P  VK  E+LEG+GG G+IKK T  
Sbjct: 1   MGVFTYETEFTSVIPPEKLFKAFILDADNLIPKVAPTAVKGTEILEGDGGVGTIKKVTFG 60

Query: 59  EGGQVKYAKHKIEEEDKVNLKLKYSVIEGNDLADYKLEKISFEHQWRASPNGGSICKTIC 118
           EG Q  Y KH+++  DK NL   Y++IEG+ L+D  +E I+++ +  ASP+GGSI KT  
Sbjct: 61  EGSQYAYVKHRVDGIDKDNLSYSYTLIEGDALSDV-IENIAYDIKLVASPDGGSIVKTTS 119

Query: 119 KLHAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQANPDVCN 159
             H KG+VE+ EEQ KAGKE+  G+ K VEAYL ANPD  N
Sbjct: 120 HYHTKGDVEIKEEQVKAGKEKAAGLFKLVEAYLLANPDAYN 160

Prunus armeniaca (taxid: 36596)

>sp|Q40280|MAL12_MALDO Major allergen Mal d 1 OS=Malus domestica PE=1 SV=3

 Score =  152 bits (384), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 79/161 (49%), Positives = 107/161 (66%), Gaps = 4/161 (2%)

Query: 1   MGVVTYESEETYAVPPARMFNA--LASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIV 58
           MGV T+E+E T  +PP R+F A  L +DNL  KI P  +K+ E+LEG+GGPG+IKK T  
Sbjct: 1   MGVYTFENEYTSEIPPPRLFKAFVLDADNLIPKIAPQAIKHAEILEGDGGPGTIKKITFG 60

Query: 59  EGGQVKYAKHKIEEEDKVNLKLKYSVIEGNDLADYKLEKISFEHQWRASPNGGSICKTIC 118
           EG Q  Y KHKI+  D+ N    Y++IEG+ L D  +EK+S+E +  AS   GSI K+I 
Sbjct: 61  EGSQYGYVKHKIDSVDEANYSYAYTLIEGDALTD-TIEKVSYETKLVAS-GSGSIIKSIS 118

Query: 119 KLHAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQANPDVCN 159
             H KG+VE+ EE  KAGKE+  G+ K +E+YL+ +PD  N
Sbjct: 119 HYHTKGDVEIKEEHVKAGKEKAHGLFKLIESYLKGHPDAYN 159

Malus domestica (taxid: 3750)

>sp|O65200|PYRC1_PYRCO Major allergen Pyr c 1 OS=Pyrus communis GN=PYRC1 PE=1 SV=1

 Score =  147 bits (371), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 75/161 (46%), Positives = 108/161 (67%), Gaps = 4/161 (2%)

Query: 1   MGVVTYESEETYAVPPARMFNA--LASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIV 58
           MG+ T+E+E T  +PP R+F A  L +DNL  KI P  +K+ E+LEGNGGPG+IKK T  
Sbjct: 1   MGLYTFENEFTSEIPPPRLFKAFVLDADNLIPKIAPQAIKHAEILEGNGGPGTIKKITFG 60

Query: 59  EGGQVKYAKHKIEEEDKVNLKLKYSVIEGNDLADYKLEKISFEHQWRASPNGGSICKTIC 118
           EG Q  Y KH+++  D+ +    Y++IEG+ L D  +EKIS+E +  AS +G +I K+I 
Sbjct: 61  EGSQYGYVKHRVDSIDEASYSYAYTLIEGDALTD-TIEKISYEAKLVASGSGSTI-KSIS 118

Query: 119 KLHAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQANPDVCN 159
             H KG++E+ EE  KAGKE+  G+ K +E+YL+ +PD  N
Sbjct: 119 HYHTKGDIEIKEEHVKAGKEKAHGLFKLIESYLKDHPDAYN 159

Pyrus communis (taxid: 23211)

>sp|P43211|MAL11_MALDO Major allergen Mal d 1 OS=Malus domestica GN=MALD1 PE=1 SV=2

 Score =  144 bits (363), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 75/161 (46%), Positives = 105/161 (65%), Gaps = 4/161 (2%)

Query: 1   MGVVTYESEETYAVPPARMFNA--LASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIV 58
           MGV T+E+E T  +PP+R+F A  L +DNL  KI P  +K  E+LEGNGGPG+IKK T  
Sbjct: 1   MGVYTFENEFTSEIPPSRLFKAFVLDADNLIPKIAPQAIKQAEILEGNGGPGTIKKITFG 60

Query: 59  EGGQVKYAKHKIEEEDKVNLKLKYSVIEGNDLADYKLEKISFEHQWRASPNGGSICKTIC 118
           EG Q  Y KH+I+  D+ +    Y++IEG+ L D  +EKIS+E +  A  +G +I K+I 
Sbjct: 61  EGSQYGYVKHRIDSIDEASYSYSYTLIEGDALTD-TIEKISYETKLVACGSGSTI-KSIS 118

Query: 119 KLHAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQANPDVCN 159
             H KG +E+ EE  K GKE+  G+ K +E+YL+ +PD  N
Sbjct: 119 HYHTKGNIEIKEEHVKVGKEKAHGLFKLIESYLKDHPDAYN 159

Malus domestica (taxid: 3750)

>sp|Q43560|PR1_MEDSA Class-10 pathogenesis-related protein 1 OS=Medicago sativa GN=MSPR10-1 PE=2 SV=1

 Score =  139 bits (351), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 74/158 (46%), Positives = 99/158 (62%), Gaps = 4/158 (2%)

Query: 1   MGVVTYESEETYAVPPARMFNALA--SDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIV 58
           MGV  +E E T  V PAR++ AL   SDNL  K+  D ++++E++EGNGG G+IKK T V
Sbjct: 1   MGVFNFEDETTSIVAPARLYKALVTDSDNLIPKVI-DAIQSIEIVEGNGGAGTIKKLTFV 59

Query: 59  EGGQVKYAKHKIEEEDKVNLKLKYSVIEGNDLADYKLEKISFEHQWRASPNGGSICKTIC 118
           EGG+ KY  HK++  D VN    YS++ G  L D  +EKISFE +  A P+GGS  K   
Sbjct: 60  EGGETKYDLHKVDLVDDVNFAYNYSIVGGGGLPD-TVEKISFESKLSAGPDGGSTAKLTV 118

Query: 119 KLHAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQANPD 156
           K   KG+   +EE+ K GK R  G+ K +E Y+ ANPD
Sbjct: 119 KYFTKGDAAPSEEEIKGGKARGDGLFKALEGYVLANPD 156

Medicago sativa (taxid: 3879)

>sp|P38948|MPAG1_ALNGL Major pollen allergen Aln g 1 OS=Alnus glutinosa PE=1 SV=2

 Score =  139 bits (350), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 76/161 (47%), Positives = 102/161 (63%), Gaps = 3/161 (1%)

Query: 1   MGVVTYESEETYAVPPARMFNA--LASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIV 58
           MGV  YE+E    +P AR+F A  L  D L  K+ P+ V +VE +EGNGGPG+IKK T  
Sbjct: 1   MGVFNYEAETPSVIPAARLFKAFILDGDKLLPKVAPEAVSSVENIEGNGGPGTIKKITFP 60

Query: 59  EGGQVKYAKHKIEEEDKVNLKLKYSVIEGNDLADYKLEKISFEHQWRASPNGGSICKTIC 118
           EG   KY K +++E D+VN K  +SVIEG  + D  LEK+  E +  A+P+GGSI K   
Sbjct: 61  EGSPFKYVKERVDEVDRVNFKYSFSVIEGGAVGD-ALEKVCNEIKIVAAPDGGSILKISN 119

Query: 119 KLHAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQANPDVCN 159
           K H KG+ E+  EQ K  KE+ +G++K VE+YL A+ D  N
Sbjct: 120 KFHTKGDHEINAEQIKIEKEKAVGLLKAVESYLLAHSDAYN 160

Alnus glutinosa (taxid: 3517)

>sp|P43183|BEV1J_BETPN Major pollen allergen Bet v 1-J OS=Betula pendula GN=BETV1J PE=1 SV=2

 Score =  139 bits (350), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 79/161 (49%), Positives = 100/161 (62%), Gaps = 3/161 (1%)

Query: 1   MGVVTYESEETYAVPPARMFNA--LASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIV 58
           MGV  YE+E T  +P AR+F A  L  DNL  K+ P  + +VE +EGNGGPG+IKK +  
Sbjct: 1   MGVFNYETEATSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFP 60

Query: 59  EGGQVKYAKHKIEEEDKVNLKLKYSVIEGNDLADYKLEKISFEHQWRASPNGGSICKTIC 118
           EG   KY K +++E D  N K  YSVIEG  + D  LEKIS E +  A+PNGGSI K   
Sbjct: 61  EGFPFKYVKDRVDEVDHTNFKYSYSVIEGGPVGD-TLEKISNEIKIVATPNGGSILKINN 119

Query: 119 KLHAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQANPDVCN 159
           K H KG+ EV  EQ KA KE    +++ VE+YL A+ D  N
Sbjct: 120 KYHTKGDHEVKAEQIKASKEMGETLLRAVESYLLAHSDAYN 160

May be a general steroid carrier protein.

Betula pendula (taxid: 3505)

>sp|P15494|BEV1A_BETPN Major pollen allergen Bet v 1-A OS=Betula pendula GN=BETVIA PE=1 SV=2

 Score =  139 bits (349), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 78/161 (48%), Positives = 100/161 (62%), Gaps = 3/161 (1%)

Query: 1   MGVVTYESEETYAVPPARMFNA--LASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIV 58
           MGV  YE+E T  +P AR+F A  L  DNL  K+ P  + +VE +EGNGGPG+IKK +  
Sbjct: 1   MGVFNYETETTSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFP 60

Query: 59  EGGQVKYAKHKIEEEDKVNLKLKYSVIEGNDLADYKLEKISFEHQWRASPNGGSICKTIC 118
           EG   KY K +++E D  N K  YSVIEG  + D  LEKIS E +  A+P+GGSI K   
Sbjct: 61  EGFPFKYVKDRVDEVDHTNFKYNYSVIEGGPIGD-TLEKISNEIKIVATPDGGSILKISN 119

Query: 119 KLHAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQANPDVCN 159
           K H KG+ EV  EQ KA KE    +++ VE+YL A+ D  N
Sbjct: 120 KYHTKGDHEVKAEQVKASKEMGETLLRAVESYLLAHSDAYN 160

May be a general steroid carrier protein.

Betula pendula (taxid: 3505)

>sp|P43178|BEV1E_BETPN Major pollen allergen Bet v 1-E OS=Betula pendula GN=BETV1E PE=1 SV=2

 Score =  138 bits (347), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 79/161 (49%), Positives = 100/161 (62%), Gaps = 3/161 (1%)

Query: 1   MGVVTYESEETYAVPPARMFNA--LASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIV 58
           MGV  YE+E T  +P AR+F A  L  DNL  K+ P  + +VE +EGNGGPG+IKK +  
Sbjct: 1   MGVFNYETEATSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFP 60

Query: 59  EGGQVKYAKHKIEEEDKVNLKLKYSVIEGNDLADYKLEKISFEHQWRASPNGGSICKTIC 118
           EG   KY K +++E D  N K  YSVIEG  + D  LEKIS E +  A+PNGGSI K   
Sbjct: 61  EGIPFKYVKGRVDEVDHTNFKYSYSVIEGGPVGD-TLEKISNEIKIVATPNGGSILKINN 119

Query: 119 KLHAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQANPDVCN 159
           K H KG+ EV  EQ KA KE    +++ VE+YL A+ D  N
Sbjct: 120 KYHTKGDHEVKAEQIKASKEMGETLLRAVESYLLAHSDAYN 160

May be a general steroid carrier protein.

Betula pendula (taxid: 3505)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	159
147853972	159	hypothetical protein VITISV_025732 [Viti	0.974	0.974	0.563	2e-42
381146575	160	Bet v 1 allergen [Quercus suber]	0.993	0.987	0.540	8e-42
147777970	159	hypothetical protein VITISV_007417 [Viti	0.974	0.974	0.544	5e-41
225431840	159	PREDICTED: major allergen Pru ar 1 [Viti	0.974	0.974	0.550	5e-41
381146571	160	Bet v 1 allergen [Quercus suber]	0.993	0.987	0.534	7e-41
381146573	160	Bet v 1 allergen [Quercus suber]	0.993	0.987	0.527	2e-40
147853971	159	hypothetical protein VITISV_025731 [Viti	0.974	0.974	0.525	2e-40
225431838	159	PREDICTED: major allergen Pru ar 1 [Viti	0.974	0.974	0.525	5e-40
381146577	160	Bet v 1 allergen [Quercus suber]	0.993	0.987	0.521	8e-40
381146579	160	Bet v 1 allergen [Quercus suber]	0.993	0.987	0.534	8e-40

>gi|147853972|emb|CAN79558.1| hypothetical protein VITISV_025732 [Vitis vinifera]

 Score =  177 bits (448), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 89/158 (56%), Positives = 111/158 (70%), Gaps = 3/158 (1%)

Query: 1   MGVVTYESEETYAVPPARMFNA--LASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIV 58
           MGV+TYE E T ++PPA+MF A  L SD L  KI P  +K+ E++EG+GGPGSIKK T  
Sbjct: 1   MGVITYEHEXTSSIPPAKMFKAFILDSDKLIPKILPQAIKSTEIIEGDGGPGSIKKITFG 60

Query: 59  EGGQVKYAKHKIEEEDKVNLKLKYSVIEGNDLADYKLEKISFEHQWRASPNGGSICKTIC 118
           EG Q  Y KH+++  DK N    YSVIEG+ L    LE IS+E +  ASP+GGSICK+  
Sbjct: 61  EGSQFNYVKHRVDGIDKENFTYSYSVIEGDALMG-TLESISYEVKLVASPSGGSICKSTS 119

Query: 119 KLHAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQANPD 156
           K H KG+ E+TE+Q KAGKE+ LG+ K VEAYL ANPD
Sbjct: 120 KYHTKGDFEITEDQIKAGKEKALGLFKAVEAYLLANPD 157

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|381146575|gb|AFF59689.1| Bet v 1 allergen [Quercus suber]

 Score =  174 bits (442), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 87/161 (54%), Positives = 113/161 (70%), Gaps = 3/161 (1%)

Query: 1   MGVVTYESEETYAVPPARMFNALA--SDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIV 58
           MGV TYESE T A+PPAR+F A    +DNL  K+ P  +K+ E++EGNGGPG+IKK T  
Sbjct: 1   MGVFTYESENTSAIPPARLFKAFVVDADNLIPKVAPQAIKSTEIIEGNGGPGTIKKITFG 60

Query: 59  EGGQVKYAKHKIEEEDKVNLKLKYSVIEGNDLADYKLEKISFEHQWRASPNGGSICKTIC 118
           EG Q KY KH+++E +  +    YSVIEG+ L+D  LEKIS+E +  ASP+GGSI K+  
Sbjct: 61  EGSQFKYVKHRVDEVNHEHFTFAYSVIEGDALSDM-LEKISYETKIVASPDGGSILKSTS 119

Query: 119 KLHAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQANPDVCN 159
           K H KG+ E+ EEQ KAGKE+  G+ K VE YL A+PD+ N
Sbjct: 120 KYHTKGDHEIKEEQVKAGKEKASGLFKAVEGYLLAHPDLYN 160

Source: Quercus suber

Species: Quercus suber

Genus: Quercus

Family: Fagaceae

Order: Fagales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147777970|emb|CAN67367.1| hypothetical protein VITISV_007417 [Vitis vinifera]

 Score =  172 bits (435), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 86/158 (54%), Positives = 111/158 (70%), Gaps = 3/158 (1%)

Query: 1   MGVVTYESEETYAVPPARMFNA--LASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIV 58
           MGV++YE E   ++PPA++F A  L SDNL  K+ P  +K VE++EG+GGPGSIKK T  
Sbjct: 1   MGVISYEHEIISSIPPAKIFKAFILDSDNLIPKVLPQAIKCVEIIEGDGGPGSIKKITFG 60

Query: 59  EGGQVKYAKHKIEEEDKVNLKLKYSVIEGNDLADYKLEKISFEHQWRASPNGGSICKTIC 118
           EG Q  Y KH+++  DK N    YS+IEG+ L    LE IS+E +  ASPNGGSICK+  
Sbjct: 61  EGSQFNYVKHRVDGIDKENFTYSYSLIEGDALMG-TLESISYEVKLVASPNGGSICKSTS 119

Query: 119 KLHAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQANPD 156
           K H KG+ E+TE+Q KAGKE+ +G+ K VEAYL ANPD
Sbjct: 120 KYHTKGDFEITEDQIKAGKEKAMGLFKAVEAYLLANPD 157

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225431840|ref|XP_002273982.1| PREDICTED: major allergen Pru ar 1 [Vitis vinifera] gi|296083303|emb|CBI22939.3| unnamed protein product [Vitis vinifera]

 Score =  172 bits (435), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 87/158 (55%), Positives = 111/158 (70%), Gaps = 3/158 (1%)

Query: 1   MGVVTYESEETYAVPPARMFNA--LASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIV 58
           MGV++YE E   ++PPA++F A  L SDNL  K+ P  +K VE++EG+GGPGSIKK T  
Sbjct: 1   MGVISYEHEIISSIPPAKIFKAFILDSDNLIPKVLPQAIKCVEIIEGDGGPGSIKKITFG 60

Query: 59  EGGQVKYAKHKIEEEDKVNLKLKYSVIEGNDLADYKLEKISFEHQWRASPNGGSICKTIC 118
           EG Q  Y KH+++  DK N    YSVIEG+ L    LE IS+E +  ASP+GGSICK+  
Sbjct: 61  EGSQFNYVKHRVDGIDKENFTYSYSVIEGDALMG-TLESISYEVKLVASPSGGSICKSTS 119

Query: 119 KLHAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQANPD 156
           K H KG+ E+TE+Q KAGKE+ LG+ K VEAYL ANPD
Sbjct: 120 KYHTKGDFEITEDQIKAGKEKALGLFKAVEAYLLANPD 157

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|381146571|gb|AFF59687.1| Bet v 1 allergen [Quercus suber]

 Score =  171 bits (434), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 86/161 (53%), Positives = 112/161 (69%), Gaps = 3/161 (1%)

Query: 1   MGVVTYESEETYAVPPARMFNALA--SDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIV 58
           MGV TYE+E T A+PPAR+F A    +DNL  K+ P  +K+ E++EGNGGPG+IKK T  
Sbjct: 1   MGVFTYETENTSAIPPARLFKAFVVDADNLIPKVAPQAIKSTEIIEGNGGPGTIKKITFG 60

Query: 59  EGGQVKYAKHKIEEEDKVNLKLKYSVIEGNDLADYKLEKISFEHQWRASPNGGSICKTIC 118
           EG Q KY KH+++E +  +    YSVIEG+ L+D  LEKIS+E +  ASP+GGSI K+  
Sbjct: 61  EGSQFKYVKHRVDEVNHEHFTFAYSVIEGDALSDM-LEKISYETKIVASPDGGSILKSTS 119

Query: 119 KLHAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQANPDVCN 159
           K H KG+ E+ EEQ KAGKE+  G+ K VE YL A+ DV N
Sbjct: 120 KYHTKGDHEIKEEQVKAGKEKASGLFKAVEGYLLAHSDVYN 160

Source: Quercus suber

Species: Quercus suber

Genus: Quercus

Family: Fagaceae

Order: Fagales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|381146573|gb|AFF59688.1| Bet v 1 allergen [Quercus suber]

 Score =  170 bits (430), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 85/161 (52%), Positives = 112/161 (69%), Gaps = 3/161 (1%)

Query: 1   MGVVTYESEETYAVPPARMFNALA--SDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIV 58
           MGV T+ESE T A+PPAR+F A    +DNL  K+ P  +K+ E++EGNGGPG+IKK T  
Sbjct: 1   MGVFTHESENTSAIPPARLFKAFVVDADNLIPKVAPQAIKSTEIIEGNGGPGTIKKITFG 60

Query: 59  EGGQVKYAKHKIEEEDKVNLKLKYSVIEGNDLADYKLEKISFEHQWRASPNGGSICKTIC 118
           EG Q KY KH+++E +  +    YSVIE + L+D  LEKIS+E +  ASP+GGSI K+  
Sbjct: 61  EGSQFKYVKHRVDEVNHEHFTFAYSVIEDDALSDM-LEKISYETKIVASPDGGSILKSTS 119

Query: 119 KLHAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQANPDVCN 159
           K H KG+ E+ EEQ KAGKE+  G+ K VE YL A+PD+ N
Sbjct: 120 KYHTKGDHEIKEEQVKAGKEKASGLFKAVEGYLLAHPDLYN 160

Source: Quercus suber

Species: Quercus suber

Genus: Quercus

Family: Fagaceae

Order: Fagales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147853971|emb|CAN79557.1| hypothetical protein VITISV_025731 [Vitis vinifera]

 Score =  169 bits (429), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 83/158 (52%), Positives = 110/158 (69%), Gaps = 3/158 (1%)

Query: 1   MGVVTYESEETYAVPPARMFNA--LASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIV 58
           MG +TYE E T ++PPA+MF A  L  D+L  K+ P  +K VE++EG+GGPG IKK T  
Sbjct: 1   MGAITYEMEVTSSIPPAKMFKAFVLDVDSLIPKVLPQPIKCVEIIEGDGGPGMIKKITFG 60

Query: 59  EGGQVKYAKHKIEEEDKVNLKLKYSVIEGNDLADYKLEKISFEHQWRASPNGGSICKTIC 118
           EG Q  Y KH+I+  DK N    Y++IEG+ L D  LE I +E +  ASP+GGSICK I 
Sbjct: 61  EGSQFNYVKHRIDSLDKENFTYCYTIIEGDALMD-TLESIYYEVKLVASPDGGSICKNIS 119

Query: 119 KLHAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQANPD 156
           K H KG++++TE+Q KAGKE+ +G+ K +EAYL ANPD
Sbjct: 120 KYHTKGDIQITEDQIKAGKEKAMGMFKAIEAYLLANPD 157

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225431838|ref|XP_002273952.1| PREDICTED: major allergen Pru ar 1 [Vitis vinifera] gi|296083304|emb|CBI22940.3| unnamed protein product [Vitis vinifera]

 Score =  169 bits (427), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 83/158 (52%), Positives = 109/158 (68%), Gaps = 3/158 (1%)

Query: 1   MGVVTYESEETYAVPPARMFNA--LASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIV 58
           MG +TYE E T ++PPA+MF A  L  DNL  K+ P  +K VE++EG+GGPG+IKK    
Sbjct: 1   MGAITYEMEVTSSIPPAKMFKAFVLDVDNLIPKVLPQAIKCVEIIEGDGGPGTIKKINFG 60

Query: 59  EGGQVKYAKHKIEEEDKVNLKLKYSVIEGNDLADYKLEKISFEHQWRASPNGGSICKTIC 118
           EG Q  Y KH I+  DK N    Y++IEG+ L D  LE I +E +  ASP+GGSICK I 
Sbjct: 61  EGSQFNYVKHWIDSLDKENFTYCYTIIEGDALMD-NLESIYYEVKLVASPDGGSICKNIS 119

Query: 119 KLHAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQANPD 156
           K H KG++++TE+Q KAGKE+ +G+ K +EAYL ANPD
Sbjct: 120 KYHTKGDIQITEDQIKAGKEKAMGMFKAIEAYLLANPD 157

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|381146577|gb|AFF59690.1| Bet v 1 allergen [Quercus suber]

 Score =  168 bits (425), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 84/161 (52%), Positives = 111/161 (68%), Gaps = 3/161 (1%)

Query: 1   MGVVTYESEETYAVPPARMFNALA--SDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIV 58
           MGV TYE+E T A+PPAR+F A    +DNL  K+ P  +K+ E++EGNGGPG+IKK T  
Sbjct: 1   MGVFTYETENTSAIPPARLFKAFVVDADNLIPKVAPQAIKSTEIIEGNGGPGTIKKITFG 60

Query: 59  EGGQVKYAKHKIEEEDKVNLKLKYSVIEGNDLADYKLEKISFEHQWRASPNGGSICKTIC 118
           EG Q KY +H+++E +  +    YSVIEG+ L+D  LEKIS+E +  ASP+GGSI K+  
Sbjct: 61  EGSQFKYVRHRVDEVNHEHFTFAYSVIEGDALSDM-LEKISYETKIVASPDGGSILKSTS 119

Query: 119 KLHAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQANPDVCN 159
           K H KG+ E+ EEQ KAGKE+  G+ K VE YL A+ D  N
Sbjct: 120 KYHTKGDHEIKEEQVKAGKEKASGLFKAVEGYLLAHSDPYN 160

Source: Quercus suber

Species: Quercus suber

Genus: Quercus

Family: Fagaceae

Order: Fagales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|381146579|gb|AFF59691.1| Bet v 1 allergen [Quercus suber]

 Score =  168 bits (425), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 86/161 (53%), Positives = 112/161 (69%), Gaps = 3/161 (1%)

Query: 1   MGVVTYESEETYAVPPARMFNA--LASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIV 58
           MGV TYESE T A+PPA++F A  L +DNL  K+ P  +K+ E++EGNGGPG+IKK T  
Sbjct: 1   MGVFTYESETTSAIPPAKLFKAFVLDADNLIPKVAPHAIKSAEIIEGNGGPGTIKKITFG 60

Query: 59  EGGQVKYAKHKIEEEDKVNLKLKYSVIEGNDLADYKLEKISFEHQWRASPNGGSICKTIC 118
           EG Q KY KH+I+E D  N    YSVIEG+ L++  LEKIS+E +  AS +GGS+ K+  
Sbjct: 61  EGSQFKYVKHRIDEVDHANFTYGYSVIEGDALSEV-LEKISYEIKIVASHDGGSVLKSTS 119

Query: 119 KLHAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQANPDVCN 159
           K H KG  E+ EEQ KAGKE+  G+ K +EAYL A+ D+ N
Sbjct: 120 KYHTKGAHEIKEEQIKAGKEKAAGLFKAIEAYLLAHSDLYN 160

Source: Quercus suber

Species: Quercus suber

Genus: Quercus

Family: Fagaceae

Order: Fagales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	159
TAIR|locus:2199932	155	MLP423 "MLP-like protein 423"	0.698	0.716	0.358	1.6e-08
TAIR|locus:2013950	158	MLP43 "AT1G70890" [Arabidopsis	0.616	0.620	0.314	0.00013
TAIR|locus:2143809	166	AT5G28010 "AT5G28010" [Arabido	0.716	0.686	0.297	0.00053
TAIR|locus:2152420	161	PYL11 "AT5G45860" [Arabidopsis	0.566	0.559	0.239	0.00066

TAIR|locus:2199932 MLP423 "MLP-like protein 423" [Arabidopsis thaliana (taxid:3702)]

 Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
 Identities = 43/120 (35%), Positives = 57/120 (47%)

Query:     1 MGVVTYESEETYAVPPARMFNALASD--NLPSKIFPDVVKNVEVLEGNGG-PGSIKKFTI 57
             MG+      E     PA  F     D  NL  K FP+  K ++VL G+G  PGSI+  T 
Sbjct:     1 MGLSGVLHVEVEVKSPAEKFWVALGDGINLFPKAFPNDYKTIQVLAGDGNAPGSIRLITY 60

Query:    58 VEGGQ-VKYAKHKIEEEDKVNLKLKYSVIEGNDLADYKLEKISFEHQWRASP-NGGSICK 115
              EG   VK +  +IE  D  N  + YS+I G  L  YK    +F+      P +GGS+ K
Sbjct:    61 GEGSPLVKISAERIEAVDLENKSMSYSIIGGEMLEYYK----TFKGTITVIPKDGGSLLK 116

GO:0006952 "defense response" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IDA

GO:0016556 "mRNA modification" evidence=RCA

TAIR|locus:2013950 MLP43 "AT1G70890" [Arabidopsis thaliana (taxid:3702)]

 Score = 102 (41.0 bits), Expect = 0.00013, P = 0.00013
 Identities = 33/105 (31%), Positives = 53/105 (50%)

Query:    30 SKIFPDVVKNVEVLEGNGGP-GSIKKFTIVEGGQVKYAKHKIEEEDKVNLKLKYSVIEGN 88
             SK  PD +   E+ EG+ G  GSI  +  V  G++   K+KIE  D     + + V+EG+
Sbjct:    36 SKATPDKIHGCELHEGDWGKVGSIVIWKYVHDGKLTVGKNKIEAVDPEKNLITFKVLEGD 95

Query:    89 DLADYKLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQA 133
              + +YK    SF    + +P  G    +I   H + E +++EE A
Sbjct:    96 LMNEYK----SFAFTLQVTPKQGE-SGSIAHWHLEYE-KISEEVA 134

GO:0003674 "molecular_function" evidence=ND

GO:0006952 "defense response" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

TAIR|locus:2143809 AT5G28010 "AT5G28010" [Arabidopsis thaliana (taxid:3702)]

 Score = 99 (39.9 bits), Expect = 0.00053, P = 0.00053
 Identities = 36/121 (29%), Positives = 58/121 (47%)

Query:     7 ESEETYAVPPARMFNALAS-DNLPSKIFPDVVKNVEVLEGNGGP-GSIKKFTIVEGGQVK 64
             E E     P A  ++  A   +  +K  P  V++ ++ +G  G  GSI  +  V  GQ K
Sbjct:    20 EVEVEIKAPAAIFYHIYAGRPHHVAKATPRNVQSCDLHDGEWGTVGSIVYWNYVHEGQAK 79

Query:    65 YAKHKIEEEDKVNLKLKYSVIEGNDLADYKLEKISFEHQWRASPNGGSICKTICKLHAKG 124
              AK +IE  +     +K+ VIEG+ +A+YK    SF    + +P  G    ++ K H + 
Sbjct:    80 VAKERIELVEPEKKLIKFRVIEGDVMAEYK----SFLITIQVTPKEGGT-GSVVKWHIEY 134

Query:   125 E 125
             E
Sbjct:   135 E 135

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA

TAIR|locus:2152420 PYL11 "AT5G45860" [Arabidopsis thaliana (taxid:3702)]

 Score = 98 (39.6 bits), Expect = 0.00066, P = 0.00066
 Identities = 22/92 (23%), Positives = 52/92 (56%)

Query:    10 ETYAVPPARMFNALASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQVKYAKHK 69
             +T   P + +++ L   + P + +   VK   +  G+GG GS+++ T+V G   ++++ +
Sbjct:    16 QTIDAPLSLVWSILRRFDNP-QAYKQFVKTCNLSSGDGGEGSVREVTVVSGLPAEFSRER 74

Query:    70 IEEEDKVNLKLKYSVIEGND-LADYKLEKISF 100
             ++E D  +  +  S+I G+  L +Y+ + ++F
Sbjct:    75 LDELDDESHVMMISIIGGDHRLVNYRSKTMAF 106


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.312   0.132   0.377    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      159       159   0.00091  106 3  11 23  0.45    32
                                                     30  0.43    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  589 (63 KB)
  Total size of DFA:  143 KB (2087 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.78u 0.10s 16.88t   Elapsed:  00:00:01
  Total cpu time:  16.78u 0.10s 16.88t   Elapsed:  00:00:01
  Start:  Sat May 11 02:05:56 2013   End:  Sat May 11 02:05:57 2013

GO:0005575 "cellular_component" evidence=ND

GO:0005515 "protein binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O50001	PRU1_PRUAR	No assigned EC number	0.5155	0.9937	0.9875	N/A	no
O24248	PRU1_PRUAV	No assigned EC number	0.5217	0.9937	0.9875	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	PR10.5	SubName- Full=Chromosome chr5 scaffold_64, whole genome shotgun sequence; (159 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00033091001	SubName- Full=Chromosome chr5 scaffold_64, whole genome shotgun sequence; (357 aa)							•		0.483
	GSVIVG00033064001	SubName- Full=Chromosome chr5 scaffold_64, whole genome shotgun sequence; (288 aa)							•		0.483

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	159
cd07816	148	cd07816, Bet_v1-like, Ligand-binding bet_v_1 domai	2e-42
pfam00407	150	pfam00407, Bet_v_1, Pathogenesis-related protein B	9e-29
smart01037	151	smart01037, Bet_v_1, Pathogenesis-related protein	1e-10
cd07821	140	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance	6e-05

>gnl|CDD|176858 cd07816, Bet_v1-like, Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins

 Score =  137 bits (348), Expect = 2e-42
 Identities = 63/149 (42%), Positives = 87/149 (58%), Gaps = 4/149 (2%)

Query: 5   TYESEETYAVPPARMFNAL--ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQ 62
           T E E    VP  +++ A    S  LP K+ P V+K+VE+LEG+GGPGSIK  T   GG+
Sbjct: 2   TLEHEVELKVPAEKLWKAFVLDSHLLPPKL-PPVIKSVELLEGDGGPGSIKLITFGPGGK 60

Query: 63  VKYAKHKIEEEDKVNLKLKYSVIEGNDLADYKLEKISFEHQWRASPNGGSICKTICKLHA 122
           VKY K +I+  D+ N   KY+VIEG D+     +    E ++    +GG + K   +   
Sbjct: 61  VKYVKERIDAVDEENKTYKYTVIEG-DVLKDGYKSYKVEIKFVPKGDGGCVVKWTIEYEK 119

Query: 123 KGEVEVTEEQAKAGKERVLGVVKGVEAYL 151
           KG+ E  EE+ KAGKE+ L + K VEAYL
Sbjct: 120 KGDAEPPEEEIKAGKEKALKMFKAVEAYL 148

This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianthrone hypericin. NCSs catalyze the condensation of dopamine and 4-hydroxyphenylacetaldehyde to (S)-norcoclaurine, the first committed step in the biosynthesis of benzylisoquinoline alkaloids such as morphine. The role of MLPs is unclear; however, they are associated with fruit and flower development and in pathogen defense responses. A number of PR-10 proteins in this subgroup, including Bet v 1, have in vitro RNase activity, the biological significance of which is unclear. Bet v 1 family proteins have a conserved glycine-rich P (phosphate-binding)-loop proximal to the entrance of the ligand-binding pocket. However, its conformation differs from that of the canonical P-loop structure found in nucleotide-binding proteins. Several PR-10 members including Bet v1 are allergenic. Cross-reactivity of Bet v 1 with homologs from plant foods results in birch-fruit syndrome. Length = 148

>gnl|CDD|215904 pfam00407, Bet_v_1, Pathogenesis-related protein Bet v I family

 Score =  103 bits (258), Expect = 9e-29
 Identities = 56/156 (35%), Positives = 78/156 (50%), Gaps = 9/156 (5%)

Query: 2   GVVTYESEETYAVPPARMFNALAS-DNLPSKIFPDVVKNVEVLEGNGGP-GSIKKFTIVE 59
            V   E+E    V   + + A    D+L  K  P  ++ VEV EG  G  GSIKK+T  E
Sbjct: 1   LVGKLETEVEIKVSADKFYKAFKLEDHLIPKAIPHHIQGVEVHEGEWGTGGSIKKWTYTE 60

Query: 60  GGQVKYAKHKIEEEDKVNLKLKYSVIEGNDLADYKLEKISFEHQWRASPNGGSICKTICK 119
            G+ K  K +IE +D+ N  + YSV+EG+ L DYK   I+   Q     NGGSI K   +
Sbjct: 61  DGKPKVVKERIEADDEKNKTITYSVLEGDVLEDYK-SFITT-LQVIPKSNGGSIVKWTIE 118

Query: 120 LHAKGE-VEVTEEQAKAGKERVLGVVKGVEAYLQAN 154
               G+ V   E+  K   +    + K +EA+L AN
Sbjct: 119 YEKIGDDVPEPEKYLKFVVK----LTKDIEAHLLAN 150

This family is named after Bet v 1, the major birch pollen allergen. This protein belongs to family 10 of plant pathogenesis-related proteins (PR-10), cytoplasmic proteins of 15-17 kd that are wide-spread among dicotyledonous plants. In recent years, a number of diverse plant proteins with low sequence similarity to Bet v 1 was identified. A classification by sequence similarity yielded several subfamilies related to PR-10: - Pathogenesis-related proteins PR-10: These proteins were identified as major tree pollen allergens in birch and related species (hazel, alder), as plant food allergens expressed in high levels in fruits, vegetables and seeds (apple, celery, hazelnut), and as pathogenesis-related proteins whose expression is induced by pathogen infection, wounding, or abiotic stress. Hyp-1, an enzyme involved in the synthesis of the bioactive naphthodianthrone hypericin in St. John's wort (Hypericum perforatum) also belongs to this family. Most of these proteins were found in dicotyledonous plants. In addition, related sequences were identified in monocots and conifers. - Cytokinin-specific binding proteins: These legume proteins bind cytokinin plant hormones. - (S)-Norcoclaurine synthases are enzymes catalyzing the condensation of dopamine and 4-hydroxyphenylacetaldehyde to (S)-norcoclaurine, the first committed step in the biosynthesis of benzylisoquinoline alkaloids such as morphine. -Major latex proteins and ripening-related proteins are proteins of unknown biological function that were first discovered in the latex of opium poppy (Papaver somniferum) and later found to be upregulated during ripening of fruits such as strawberry and cucumber. The occurrence of Bet v 1-related proteins is confined to seed plants with the exception of a cytokinin-binding protein from the moss Physcomitrella patens. Length = 150

>gnl|CDD|198105 smart01037, Bet_v_1, Pathogenesis-related protein Bet v I family

 Score = 56.2 bits (136), Expect = 1e-10
 Identities = 31/113 (27%), Positives = 50/113 (44%), Gaps = 4/113 (3%)

Query: 5   TYESEETYAVPPARMFNALASDN-LPSKIFPDVVKNVEVLEGNGG-PGSIKKFTIVEGGQ 62
           T E+E        + F    S N    K     ++ V++ EG+ G  GSIK +     G+
Sbjct: 5   TLETEVPIKGSAEKFFKRFVSRNHHFPKATGHHIQGVDLHEGDWGSHGSIKIWNYTVDGK 64

Query: 63  VKYAKHKIEEEDKVNLKLKYSVIEGNDLADYKLEKISFEHQWRASPNGGSICK 115
            +  K +IE  D     + + V+EG+ + +YK  K +   Q      GGS+ K
Sbjct: 65  EEVFKERIEAVDDEKKTITFRVLEGDVMEEYKSFKGTI--QVTPKSGGGSVVK 115

This family is named after Bet v 1, the major birch pollen allergen. This protein belongs to family 10 of plant pathogenesis-related proteins (PR-10), cytoplasmic proteins of 15-17 kd that are wide-spread among dicotyledonous plants. In recent years, a number of diverse plant proteins with low sequence similarity to Bet v 1 was identified. A classification by sequence similarity yielded several subfamilies related to PR-10.- Pathogenesis-related proteins PR-10: These proteins were identified as major tree pollen allergens in birch and related species (hazel, alder), as plant food allergens expressed in high levels in fruits, vegetables and seeds (apple, celery, hazelnut), and as pathogenesis-related proteins whose expression is induced by pathogen infection, wounding, or abiotic stress. Hyp-1, an enzyme involved in the synthesis of the bioactive naphthodianthrone hypericin in St. John's wort (Hypericum perforatum) also belongs to this family. Most of these proteins were found in dicotyledonous plants. In addition, related sequences were identified in monocots and conifers. - Cytokinin-specific binding proteins: These legume proteins bind cytokinin plant hormones. - (S)-Norcoclaurine synthases are enzymes catalysing the condensation of dopamine and 4-hydroxyphenylacetaldehyde to (S)-norcoclaurine, the first committed step in the biosynthesis of benzylisoquinoline alkaloids such as morphine. -Major latex proteins and ripening-related proteins are proteins of unknown biological function that were first discovered in the latex of opium poppy (Papaver somniferum) and later found to be upregulated during ripening of fruits such as strawberry and cucumber. The occurrence of Bet v 1-related proteins is confined to seed plants with the exception of a cytokinin-binding protein from the moss Physcomitrella patens. Length = 151

>gnl|CDD|176863 cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins

 Score = 40.4 bits (95), Expect = 6e-05
 Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 5/89 (5%)

Query: 7  ESEETYAVPPARMFNALASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQVKYA 66
              T   P  +++  L+      K  P V    E+  G  G G+++  T+ +GG V   
Sbjct: 4  TVSVTIDAPADKVWALLSDFGGLHKWHPAVAS-CELEGGGPGVGAVRTVTLKDGGTV--- 59

Query: 67 KHKIEEEDKVNLKLKYSVIEGND-LADYK 94
          + ++   D    +  Y ++EG   + +Y 
Sbjct: 60 RERLLALDDAERRYSYRIVEGPLPVKNYV 88

The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate blocks substrate access to the phosphatase active site. A conserved Trp from PP2C inserts into PYL to lock the receptor in a closed formation. This group also contains Methylobacterium extorquens AM1 MxaD. The mxaD gene is located within the mxaFJGIR(S)ACKLDEHB cluster which encodes proteins involved in methanol oxidation. MxaD may participate in the periplasmic electron transport chain for oxidation of methanol. Mutants lacking MxaD exhibit a reduced growth on methanol, and a lower rate of respiration with methanol. Length = 140

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	159
PF00407	151	Bet_v_1: Pathogenesis-related protein Bet v I fami	100.0
cd07816	148	Bet_v1-like Ligand-binding bet_v_1 domain of major	100.0
cd07821	140	PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1),	99.78
PF10604	139	Polyketide_cyc2: Polyketide cyclase / dehydrase an	99.65
cd08866	144	SRPBCC_11 Ligand-binding SRPBCC domain of an uncha	99.63
cd08865	140	SRPBCC_10 Ligand-binding SRPBCC domain of an uncha	99.52
cd07819	140	SRPBCC_2 Ligand-binding SRPBCC domain of an unchar	99.52
cd08861	142	OtcD1_ARO-CYC_like N-terminal and C-terminal aroma	99.52
cd07813	138	COQ10p_like Coenzyme Q-binding protein COQ10p and	99.47
cd08862	138	SRPBCC_Smu440-like Ligand-binding SRPBCC domain of	99.46
cd07822	141	SRPBCC_4 Ligand-binding SRPBCC domain of an unchar	99.44
cd07812	141	SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SR	99.37
cd05018	144	CoxG Carbon monoxide dehydrogenase subunit G (CoxG	99.34
cd07825	144	SRPBCC_7 Ligand-binding SRPBCC domain of an unchar	99.31
cd07814	139	SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-	99.31
cd07818	150	SRPBCC_1 Ligand-binding SRPBCC domain of an unchar	99.26
cd07817	139	SRPBCC_8 Ligand-binding SRPBCC domain of an unchar	99.26
cd07824	146	SRPBCC_6 Ligand-binding SRPBCC domain of an unchar	99.25
cd08860	146	TcmN_ARO-CYC_like N-terminal aromatase/cyclase dom	99.24
cd07823	146	SRPBCC_5 Ligand-binding SRPBCC domain of an unchar	99.22
PF03364	130	Polyketide_cyc: Polyketide cyclase / dehydrase and	99.15
COG3427	146	Carbon monoxide dehydrogenase subunit G, CoxG [Ene	99.15
cd07820	137	SRPBCC_3 Ligand-binding SRPBCC domain of an unchar	99.14
PRK10724	158	hypothetical protein; Provisional	99.08
PF06240	140	COXG: Carbon monoxide dehydrogenase subunit G (Cox	98.96
cd08899	157	SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligan	98.81
cd08898	145	SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligan	98.73
COG5637	217	Predicted integral membrane protein [Function unkn	98.67
cd08900	143	SRPBCC_CalC_Aha1-like_7 Putative hydrophobic ligan	98.63
cd07826	142	SRPBCC_CalC_Aha1-like_9 Putative hydrophobic ligan	98.62
cd08893	136	SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobi	98.62
cd08896	146	SRPBCC_CalC_Aha1-like_3 Putative hydrophobic ligan	98.6
cd08894	139	SRPBCC_CalC_Aha1-like_1 Putative hydrophobic ligan	98.55
cd08895	146	SRPBCC_CalC_Aha1-like_2 Putative hydrophobic ligan	98.55
cd08897	133	SRPBCC_CalC_Aha1-like_4 Putative hydrophobic ligan	98.53
cd08876	195	START_1 Uncharacterized subgroup of the steroidoge	98.47
cd08891	149	SRPBCC_CalC Ligand-binding SRPBCC domain of Microm	98.43
COG3832	149	Uncharacterized conserved protein [Function unknow	98.13
PF08327	124	AHSA1: Activator of Hsp90 ATPase homolog 1-like pr	98.1
cd08892	126	SRPBCC_Aha1 Putative hydrophobic ligand-binding SR	98.02
cd08901	136	SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligan	97.93
COG2867	146	Oligoketide cyclase/lipid transport protein [Lipid	97.92
PTZ00220	132	Activator of HSP-90 ATPase; Provisional	97.51
cd08874	205	START_STARD9-like C-terminal START domain of mamma	97.37
cd08905	209	START_STARD1-like Cholesterol-binding START domain	97.12
cd08873	235	START_STARD14_15-like Lipid-binding START domain o	97.08
cd08913	240	START_STARD14-like Lipid-binding START domain of m	96.96
cd08903	208	START_STARD5-like Lipid-binding START domain of ma	96.74
cd08871	222	START_STARD10-like Lipid-binding START domain of m	96.55
cd08868	208	START_STARD1_3_like Cholesterol-binding START doma	96.55
cd08863	141	SRPBCC_DUF1857 DUF1857, an uncharacterized ligand-	96.52
cd08906	209	START_STARD3-like Cholesterol-binding START domain	96.51
cd00177	193	START Lipid-binding START domain of mammalian STAR	96.49
PF08982	149	DUF1857: Domain of unknown function (DUF1857); Int	96.16
cd08877	215	START_2 Uncharacterized subgroup of the steroidoge	96.15
cd08914	236	START_STARD15-like Lipid-binding START domain of m	95.6
cd08869	197	START_RhoGAP C-terminal lipid-binding START domain	95.14
cd08872	235	START_STARD11-like Ceramide-binding START domain o	94.81
smart00234	206	START in StAR and phosphatidylcholine transfer pro	94.6
cd08867	206	START_STARD4_5_6-like Lipid-binding START domain o	93.4
cd08870	209	START_STARD2_7-like Lipid-binding START domain of	93.3
PF10698	159	DUF2505: Protein of unknown function (DUF2505); In	92.85
cd08911	207	START_STARD7-like Lipid-binding START domain of ma	92.11
PF01852	206	START: START domain; InterPro: IPR002913 START (St	91.06
cd08908	204	START_STARD12-like C-terminal lipid-binding START	90.27
cd08910	207	START_STARD2-like Lipid-binding START domain of ma	84.99
COG4276	153	Uncharacterized conserved protein [Function unknow	83.48

>PF00407 Bet_v_1: Pathogenesis-related protein Bet v I family; InterPro: IPR000916 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms

Probab=100.00  E-value=3.1e-42  Score=256.24  Aligned_cols=149  Identities=42%  Similarity=0.636  Sum_probs=135.0

Q ss_pred             CccEEEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCC-cEEEEEEecCCceeEEEEEEEEEecccc
Q 031431            1 MGVVTYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPG-SIKKFTIVEGGQVKYAKHKIEEEDKVNL   78 (159)
Q Consensus         1 m~~~~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~G-svR~~~~~~g~~~~~~kErl~~~D~~~~   78 (159)
                      |++++++.|+++++||+++|+++ +..+++|+++|++|++++++||||++| |||.|+|.+|++..++|||++.+|++++
T Consensus         1 m~~~~~~~E~~~~~~a~k~~ka~~~~~~llpki~P~~i~sve~~eGdgg~gGSIk~~~f~~~~~~~~~Kekve~~D~~~~   80 (151)
T PF00407_consen    1 MGVGKLEVEVEVKVSADKLWKAFKSSPHLLPKILPHVIKSVEVVEGDGGPGGSIKKWTFGPGGPFKYVKEKVEAIDEENK   80 (151)
T ss_dssp             SCEEEEEEEEEESS-HHHHHHHHTTHHHHHHHHSTTTEEEEEEEESSSSTTT-EEEEEEETTSSEEEEEEEEEEEETTTT
T ss_pred             CCcEEEEEEEEecCCHHHHHHHHhcCccchhhhChhhceeEEEEccCCCCCCeEEEEEecCCCCcceeEEEEEeecCCCc
Confidence            99999999999999999999999 888999999999999999999999877 9999999999999999999999999999


Q ss_pred             eEEEEEEeccccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHHHhHHHHHHHHHHHHHHHHhhC
Q 031431           79 KLKYSVIEGNDLADYKLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQAN  154 (159)
Q Consensus        79 ~~~y~v~eg~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~~~~~~~~~~~~k~le~~l~~~  154 (159)
                      +++|+++||+++.+|+.|..+.++  +|.++|+|+++|+++|++.++..++|+...   +++..|+|++|+||++|
T Consensus        81 ~~~y~viEGd~l~~~~~~~~~~~~--~~~~~g~~v~k~t~~Ye~~~~~~~~p~~~~---~~~~~~~K~ieayLlan  151 (151)
T PF00407_consen   81 TITYTVIEGDVLGDYKSFKSTIQK--IPKGDGGCVVKWTIEYEKKGEDVPPPEKYL---DFAVGMFKAIEAYLLAN  151 (151)
T ss_dssp             EEEEEEEEETTGTTTEEEEEEEEE--EEETTSCEEEEEEEEEEESSTSCHHHHHHH---HHHHHHHHHHHHHHHHT
T ss_pred             EEEEEEEeccccccEEEEEEEEEe--cCCCCCceEEEEEEEEEecCCCCCCcHHHH---HHHHHHHHHHHHHHhcC
Confidence            999999999999999998887764  598888999999999999988764444332   47999999999999997

A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Aln g 1, Api g 1, Bet v 1, Car b 1, Cor a 1, Dau c 1, Mal d 1 and Pru a 1. Trees within the order Fagales possess particularly potent allergens, e.g. Bet v1, the major White Birch (Betula verrucosa) pollen antigen. Bet v1 is the main cause of type I allergies observed in early spring. Type I, or immunoglobulin E-mediated (IgE-mediated) allergies affect 1 in 5 people in Europe and North America. Commonly-observed symptoms are hay fever, dermatitis, asthma and, in severe cases, anaphylactic shock. First contact with these allergens results in sensitisation; subsequent contact produces a cross-linking reaction of IgE on mast cells and concomitant release of histamine. The inevitable symptoms of an allergic reaction ensue. Recent NMR analysis [] has confirmed earlier predictions of the protein structure and site of the major T-cell epitope []. The Bet v1 protein comprises 6 anti-parallel beta-strands and 3 alpha-helices. Four of the strands dominate the global fold, and 2 of the helices form a C-terminal amphipathic helical motif. This motif is believed to be the T-cell epitope. Other proteins belonging to this family include the major pollen allergens: Aln g I from Alnus glutinosa (Alder); Api G I from Apium graveolens (Celery); Car b I from Carpinus betulus (European hornbeam); Cor a I from Corylus avellana (European hazel); Mal d I from Malus domestica (Apple). The motif is also found in: the wound-induced protein AoPR1 from Asparagus officinalis (Garden asparagus); pathogenesis-related proteins from Phaseolus vulgaris (Kidney bean) and Petroselinum crispum (Parsley) (PR1-1 and PR1-3); the disease resistance response proteins, STH-2 and STH-21, from Solanum tuberosum (Potato) and pI49, pI176 and DRRG49-C from Pisum sativum (Garden pea); the P. sativum abscisic acid-responsive proteins ABR17 and ABR18; and the stress-induced protein SAM22 from Glycine max (Soybean). ; GO: 0006952 defense response, 0009607 response to biotic stimulus; PDB: 1IFV_A 4A8V_A 4A8U_A 2K7H_A 2QIM_A 3E85_A 1H2O_A 1E09_A 1QMR_A 1FSK_D ....

>cd07816 Bet_v1-like Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins

Probab=100.00  E-value=1.9e-34  Score=213.47  Aligned_cols=144  Identities=38%  Similarity=0.566  Sum_probs=123.8

Q ss_pred             EEEEEEEEEcCCHHHHHhhh-cCCCCc-ccccCCceeEEEEEcCCCCCCcEEEEEEecCCceeEEEEEEEEEecccceEE
Q 031431            4 VTYESEETYAVPPARMFNAL-ASDNLP-SKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQVKYAKHKIEEEDKVNLKLK   81 (159)
Q Consensus         4 ~~~~~e~~i~apa~~vW~~~-d~~~~l-p~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~   81 (159)
                      ++++.+++|+||||+||+++ ||.+.+ +.|+| .|++|++++|+|++||||.|+|.+|++..+++|||+.+|+++|+++
T Consensus         1 ~~~~~e~~i~a~ad~vW~~~~~~~~~~~~~~~p-~v~~~~~~eG~~~~GsvR~~~~~~~~~~~~~kE~l~~~D~~~~~~~   79 (148)
T cd07816           1 GTLEHEVELKVPAEKLWKAFVLDSHLLPPKLPP-VIKSVELLEGDGGPGSIKLITFGPGGKVKYVKERIDAVDEENKTYK   79 (148)
T ss_pred             CcEEEEEEecCCHHHHHHHHhcChhhccccccc-cccEEEEEecCCCCceEEEEEEcCCCcceEEEEEEEEEcccccEEE
Confidence            47899999999999999999 998534 55777 7999999999999999999999988777899999999999999999


Q ss_pred             EEEEeccccC-CCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHHHhHHHHHHHHHHHHHHHHhh
Q 031431           82 YSVIEGNDLA-DYKLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQA  153 (159)
Q Consensus        82 y~v~eg~~l~-~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~~~~~~~~~~~~k~le~~l~~  153 (159)
                      |++++|+++. .|++|++++  +|.|.++++|+++|+++|++.+++.++|+..+   +.+..++++++.|++.
T Consensus        80 y~vveg~~~~~~~~~y~~t~--~v~~~~~~~t~v~Wt~~ye~~~~~~~~p~~~~---~~~~~~~~~~~~~~~~  147 (148)
T cd07816          80 YTVIEGDVLKDGYKSYKVEI--KFVPKGDGGCVVKWTIEYEKKGDAEPPEEEIK---AGKEKALKMFKAVEAY  147 (148)
T ss_pred             EEEEecccccCceEEEEEEE--EEEECCCCCEEEEEEEEEEECCCCCCCHHHHH---hHHHHHHHHHHHHHhc
Confidence            9999999865 578877766  55898778999999999999988645454443   4778889999998875

This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianth

>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins

Probab=99.78  E-value=4.6e-17  Score=116.32  Aligned_cols=137  Identities=16%  Similarity=0.196  Sum_probs=106.2

Q ss_pred             EEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEecCCceeEEEEEEEEEecccceEEEE
Q 031431            5 TYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQVKYAKHKIEEEDKVNLKLKYS   83 (159)
Q Consensus         5 ~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~y~   83 (159)
                      .++.+++|++|+++||+++ |+.+ +++|+|. +++++++++..++|+++.+.+..|   ..+++++..+|+.++.++|+
T Consensus         2 ~i~~~~~i~a~~~~V~~~l~d~~~-~~~w~~~-~~~~~~~~~~~~~g~~~~~~~~~g---~~~~~~i~~~~~~~~~i~~~   76 (140)
T cd07821           2 KVTVSVTIDAPADKVWALLSDFGG-LHKWHPA-VASCELEGGGPGVGAVRTVTLKDG---GTVRERLLALDDAERRYSYR   76 (140)
T ss_pred             cEEEEEEECCCHHHHHHHHhCcCc-hhhhccC-cceEEeecCCCCCCeEEEEEeCCC---CEEEEEehhcCccCCEEEEE
Confidence            5788999999999999999 9998 7999997 888888776556899999998766   47889999999987789999


Q ss_pred             EEeccccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHHHhHHHHHHHHHHHHHHHH
Q 031431           84 VIEGNDLADYKLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAKAGKERVLGVVKGVEAYL  151 (159)
Q Consensus        84 v~eg~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~~~~~~~~~~~~k~le~~l  151 (159)
                      +.+|+. + +..+  ..+++|.|.++|+|.++|+..|++.+. .+.+.......+.....++.|++++
T Consensus        77 ~~~~~~-~-~~~~--~~~~~~~~~~~~~t~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~L~~~~  139 (140)
T cd07821          77 IVEGPL-P-VKNY--VATIRVTPEGDGGTRVTWTAEFDPPEG-LTDELARAFLTGVYRAGLAALKAAL  139 (140)
T ss_pred             ecCCCC-C-cccc--eEEEEEEECCCCccEEEEEEEEecCCC-cchHHHHHHHHHHHHHHHHHHHHhh
Confidence            998732 1 1222  335567888777899999999999865 3333333355566677788887765

The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate

>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis

Probab=99.65  E-value=1.3e-13  Score=98.33  Aligned_cols=106  Identities=18%  Similarity=0.347  Sum_probs=81.6

Q ss_pred             EEEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEecCCceeEEEEEEEEEecccceEEE
Q 031431            4 VTYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQVKYAKHKIEEEDKVNLKLKY   82 (159)
Q Consensus         4 ~~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~y   82 (159)
                      .+++.++.|+|||++||+++ |+.+ +++|.|+ +.++++.+++ ++|..+.+....  . ..+++++..+|++.+.+.|
T Consensus         2 ~~~~~~~~v~a~~e~V~~~l~d~~~-~~~w~~~-~~~~~~~~~~-~~~~~~~~~~~g--~-~~~~~~i~~~~~~~~~~~~   75 (139)
T PF10604_consen    2 FKVEVSIEVPAPPEAVWDLLSDPEN-WPRWWPG-VKSVELLSGG-GPGTERTVRVAG--R-GTVREEITEYDPEPRRITW   75 (139)
T ss_dssp             EEEEEEEEESS-HHHHHHHHTTTTG-GGGTSTT-EEEEEEEEEC-STEEEEEEEECS--C-SEEEEEEEEEETTTTEEEE
T ss_pred             EEEEEEEEECCCHHHHHHHHhChhh-hhhhhhc-eEEEEEcccc-ccceeEEEEecc--c-cceeEEEEEecCCCcEEEE
Confidence            57999999999999999999 9998 8999996 8899877633 445556655433  2 4799999999987899999


Q ss_pred             EEEeccccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEE
Q 031431           83 SVIEGNDLADYKLEKISFEHQWRASPNGGSICKTICKLHA  122 (159)
Q Consensus        83 ~v~eg~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~  122 (159)
                      ++. ...+   ..  .+.++++.|.++ ||.++|+.+|++
T Consensus        76 ~~~-~~~~---~~--~~~~~~~~~~~~-gt~v~~~~~~~~  108 (139)
T PF10604_consen   76 RFV-PSGF---TN--GTGRWRFEPVGD-GTRVTWTVEFEP  108 (139)
T ss_dssp             EEE-SSSS---CE--EEEEEEEEEETT-TEEEEEEEEEEE
T ss_pred             EEE-ecce---eE--EEEEEEEEEcCC-CEEEEEEEEEEE
Confidence            996 2222   22  345567789875 499999999998

It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....

>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.63  E-value=5.5e-14  Score=101.86  Aligned_cols=132  Identities=14%  Similarity=0.172  Sum_probs=92.3

Q ss_pred             EEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCc-------EEEEEEecCCceeEEEEEEEEEeccc
Q 031431            6 YESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGS-------IKKFTIVEGGQVKYAKHKIEEEDKVN   77 (159)
Q Consensus         6 ~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~Gs-------vR~~~~~~g~~~~~~kErl~~~D~~~   77 (159)
                      ++.++.|+||+++||+++ |+.+ +|+|+|+ +++++++++.+. +.       .+.+...-.   ..+..++...++..
T Consensus         1 ~~~~~~i~a~~~~Vw~~l~D~~~-~~~w~p~-v~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~   74 (144)
T cd08866           1 VVARVRVPAPPETVWAVLTDYDN-LAEFIPN-LAESRLLERNGN-RVVLEQTGKQGILFFKFE---ARVVLELREREEFP   74 (144)
T ss_pred             CeEEEEECCCHHHHHHHHhChhh-HHhhCcC-ceEEEEEEcCCC-EEEEEEeeeEEEEeeeee---EEEEEEEEEecCCC
Confidence            357899999999999999 9998 7999997 889998876532 21       111111011   23455666677667


Q ss_pred             ceEEEEEEeccccCCCceeEEEEEEEEEECCC-CCeEEEEEEEEEEcCCCCCCHHHHH-hHHHHHHHHHHHHHHHH
Q 031431           78 LKLKYSVIEGNDLADYKLEKISFEHQWRASPN-GGSICKTICKLHAKGEVEVTEEQAK-AGKERVLGVVKGVEAYL  151 (159)
Q Consensus        78 ~~~~y~v~eg~~l~~Y~~~~~~~~~~~~p~~~-g~t~v~W~~~~e~~~~~~~~~~~~~-~~~~~~~~~~k~le~~l  151 (159)
                      +.+.|++++|++    +.+..  +++|+|.++ ++|.++|.+.+++...  .|...++ ...+....++++|.+.+
T Consensus        75 ~~i~~~~~~g~~----~~~~g--~w~~~~~~~~~~t~v~~~~~~~~~~~--~p~~l~~~~~~~~~~~~l~~lr~~a  142 (144)
T cd08866          75 RELDFEMVEGDF----KRFEG--SWRLEPLADGGGTLLTYEVEVKPDFF--APVFLVEFVLRQDLPTNLLAIRAEA  142 (144)
T ss_pred             ceEEEEEcCCch----hceEE--EEEEEECCCCCeEEEEEEEEEEeCCC--CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            889999998864    33444  446688877 6899999999999763  3344444 44555677787777654

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.52  E-value=1.7e-12  Score=92.36  Aligned_cols=135  Identities=16%  Similarity=0.127  Sum_probs=90.9

Q ss_pred             EEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCC-CCCCcEEEEEEecCCceeEEEEEEEEEecccceEEEE
Q 031431            6 YESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGN-GGPGSIKKFTIVEGGQVKYAKHKIEEEDKVNLKLKYS   83 (159)
Q Consensus         6 ~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~-g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~y~   83 (159)
                      ++.++.|+||+++||+++ |+.+ +++|.|. +.+++.+.+. .++|+...+....++....+++++..+|+. +.+.|.
T Consensus         1 ~~~~~~i~ap~~~Vw~~l~d~~~-~~~w~~~-~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~v~~~~p~-~~~~~~   77 (140)
T cd08865           1 VEESIVIERPVEEVFAYLADFEN-APEWDPG-VVEVEKITDGPVGVGTRYHQVRKFLGRRIELTYEITEYEPG-RRVVFR   77 (140)
T ss_pred             CceEEEEcCCHHHHHHHHHCccc-hhhhccC-ceEEEEcCCCCCcCccEEEEEEEecCceEEEEEEEEEecCC-cEEEEE
Confidence            367899999999999999 9998 8999997 6777766443 357888888765443334578899988855 668888


Q ss_pred             EEeccccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHHH-hHHHHHHHHHHHHHHHH
Q 031431           84 VIEGNDLADYKLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAK-AGKERVLGVVKGVEAYL  151 (159)
Q Consensus        84 v~eg~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~~-~~~~~~~~~~k~le~~l  151 (159)
                      ..+|.. .    +  ..++.+.|.++ +|.++|+.+|+...-.......++ ..+.....+++.|.+++
T Consensus        78 ~~~~~~-~----~--~~~~~~~~~~~-~t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~  138 (140)
T cd08865          78 GSSGPF-P----Y--EDTYTFEPVGG-GTRVRYTAELEPGGFARLLDPLMAPAFRRRARAALENLKALL  138 (140)
T ss_pred             ecCCCc-c----e--EEEEEEEEcCC-ceEEEEEEEEccchhHHHHHHHHHHHHhhhhHHHHHHHHHHh
Confidence            765532 1    2  34556688755 799999999987321111112222 22333455566665554

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.52  E-value=3.8e-12  Score=91.12  Aligned_cols=135  Identities=16%  Similarity=0.155  Sum_probs=86.2

Q ss_pred             EEEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCC-CCCCcEEEEEEecCCceeEEEEEEEEEecccceEE
Q 031431            4 VTYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGN-GGPGSIKKFTIVEGGQVKYAKHKIEEEDKVNLKLK   81 (159)
Q Consensus         4 ~~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~-g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~   81 (159)
                      .+++.++.|+||+++||+++ |+.+ +|+|+|. +.++++++++ ++.+....+++..++-.....-+++ .++ .+.++
T Consensus         2 ~~v~~s~~i~ap~e~V~~~l~D~~~-~~~w~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~i~   77 (140)
T cd07819           2 IKVSREFEIEAPPAAVMDVLADVEA-YPEWSPK-VKSVEVLLRDNDGRPEMVRIGVGAYGIKDTYALEYT-WDG-AGSVS   77 (140)
T ss_pred             ceEEEEEEEeCCHHHHHHHHhChhh-hhhhCcc-eEEEEEeccCCCCCEEEEEEEEeeeeEEEEEEEEEE-EcC-CCcEE
Confidence            47899999999999999999 9998 8999996 8899886554 3333344455543321111111222 223 56789


Q ss_pred             EEEEeccccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHHH-hHHHHHHHHHHHHHHH
Q 031431           82 YSVIEGNDLADYKLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAK-AGKERVLGVVKGVEAY  150 (159)
Q Consensus        82 y~v~eg~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~~-~~~~~~~~~~k~le~~  150 (159)
                      |+..+|...   ..+  ..+++|.|.++ +|.++|+.++++...  .|.-.++ ..+.....+++.|.+|
T Consensus        78 ~~~~~~~~~---~~~--~~~~~~~~~~~-~t~vt~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~  139 (140)
T cd07819          78 WTLVEGEGN---RSQ--EGSYTLTPKGD-GTRVTFDLTVELTVP--LPGFLKRKAEPLVLDEALKGLKKR  139 (140)
T ss_pred             EEEecccce---eEE--EEEEEEEECCC-CEEEEEEEEEEecCC--CCHHHHHHhhhHHHHHHHHhHhhh
Confidence            999887532   222  34566788866 799999999998653  3444443 2222334555555544

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains

Probab=99.52  E-value=1.3e-12  Score=94.43  Aligned_cols=136  Identities=15%  Similarity=0.166  Sum_probs=88.1

Q ss_pred             EEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEe-cCCceeEEEEEEEEEecccceEEEE
Q 031431            6 YESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIV-EGGQVKYAKHKIEEEDKVNLKLKYS   83 (159)
Q Consensus         6 ~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~-~g~~~~~~kErl~~~D~~~~~~~y~   83 (159)
                      ++.+++|++|+++||+++ |+.+ +|+|+|.  .+++.++++++...++.+... .|....+  +....+|++.+.+.|.
T Consensus         1 ~~~s~~i~ap~~~V~~~l~D~~~-~p~~~p~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~i~~~   75 (142)
T cd08861           1 VEHSVTVAAPAEDVYDLLADAER-WPEFLPT--VHVERLELDGGVERLRMWATAFDGSVHTW--TSRRVLDPEGRRIVFR   75 (142)
T ss_pred             CeEEEEEcCCHHHHHHHHHhHHh-hhccCCC--ceEEEEEEcCCEEEEEEEEEcCCCcEEEE--EEEEEEcCCCCEEEEE
Confidence            468999999999999999 9998 8999996  455555543322245655555 3332222  3445678878889999


Q ss_pred             EEeccc-cCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHHH-hHHHHHHHHHHHHHHHH
Q 031431           84 VIEGND-LADYKLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAK-AGKERVLGVVKGVEAYL  151 (159)
Q Consensus        84 v~eg~~-l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~~-~~~~~~~~~~k~le~~l  151 (159)
                      .+++.. +   ..+..  +++|+|.++++|.|+|..+|++....+.+...++ ...+....+++.|-+++
T Consensus        76 ~~~~~~~~---~~~~g--~w~~~~~~~~~t~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~  140 (142)
T cd08861          76 QEEPPPPV---ASMSG--EWRFEPLGGGGTRVTLRHDFTLGIDSPEAVPWIRRALDRNSRAELAALRAAA  140 (142)
T ss_pred             EeeCCCCh---hhhee--EEEEEECCCCcEEEEEEEEEEECCCCchhHHHHHHHHccccHHHHHHHHHHh
Confidence            887422 2   22223  5567898777899999999999865433333333 22233455666655443

This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this

>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins

Probab=99.47  E-value=2.9e-12  Score=92.56  Aligned_cols=134  Identities=14%  Similarity=0.131  Sum_probs=93.7

Q ss_pred             EEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEecCCceeEEEEEEEEEecccceEEEEE
Q 031431            6 YESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQVKYAKHKIEEEDKVNLKLKYSV   84 (159)
Q Consensus         6 ~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~y~v   84 (159)
                      ++.+++|++|++.||+++ |..+ +|+|+|+ +.+++++++++ .+....++...++....+..++. +++ .+++++..
T Consensus         1 ~~~s~~i~ap~~~v~~~i~D~~~-~~~~~p~-~~~~~vl~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~i~~~~   75 (138)
T cd07813           1 YSKSRLVPYSAEQMFDLVADVER-YPEFLPW-CTASRVLERDE-DELEAELTVGFGGIRESFTSRVT-LVP-PESIEAEL   75 (138)
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHh-hhhhcCC-ccccEEEEcCC-CEEEEEEEEeeccccEEEEEEEE-ecC-CCEEEEEe
Confidence            367899999999999999 9998 8999997 88999988765 34444455553332233444544 666 55789988


Q ss_pred             EeccccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHHH-hHHHHHHHHHHHHHHHHh
Q 031431           85 IEGNDLADYKLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAK-AGKERVLGVVKGVEAYLQ  152 (159)
Q Consensus        85 ~eg~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~~-~~~~~~~~~~k~le~~l~  152 (159)
                      ++|.+    +.+.  .+++|.|.++|+|.|+|...|++.+.  .+...+. ...+....+++++.+.+.
T Consensus        76 ~~g~~----~~~~--g~w~~~p~~~~~T~v~~~~~~~~~~~--l~~~l~~~~~~~~~~~~l~~f~~~~~  136 (138)
T cd07813          76 VDGPF----KHLE--GEWRFKPLGENACKVEFDLEFEFKSR--LLEALAGLVFDEVAKKMVDAFEKRAK  136 (138)
T ss_pred             cCCCh----hhce--eEEEEEECCCCCEEEEEEEEEEECCH--HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            88853    2222  35567998888999999999999863  2222223 444566777777776554

Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the

>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu

Probab=99.46  E-value=1.1e-11  Score=88.68  Aligned_cols=106  Identities=19%  Similarity=0.225  Sum_probs=78.0

Q ss_pred             EEEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEecCCceeEEEEEEEEEecccceEEE
Q 031431            4 VTYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQVKYAKHKIEEEDKVNLKLKY   82 (159)
Q Consensus         4 ~~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~y   82 (159)
                      ++++.+++|+||+++||+++ |+.+ +|+|+|+ +.+++...+..++|+...++...+   ..+..++.++++.++ +++
T Consensus         1 ~~~~~~~~i~Ap~~~Vw~~~~d~~~-~~~w~~~-~~~~~~~~~~~~~G~~~~~~~~~~---~~~~~~i~~~~p~~~-~~~   74 (138)
T cd08862           1 MKFEATIVIDAPPERVWAVLTDVEN-WPAWTPS-VETVRLEGPPPAVGSSFKMKPPGL---VRSTFTVTELRPGHS-FTW   74 (138)
T ss_pred             CEEEEEEEEcCCHHHHHHHHHhhhh-cccccCc-ceEEEEecCCCCCCcEEEEecCCC---CceEEEEEEecCCCE-EEE
Confidence            47899999999999999999 9998 8999997 888887654326787666665433   356778888887654 777


Q ss_pred             EEEeccccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEE
Q 031431           83 SVIEGNDLADYKLEKISFEHQWRASPNGGSICKTICKLHA  122 (159)
Q Consensus        83 ~v~eg~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~  122 (159)
                      +... +.      ...+.+++|++.++++|.++|+.+|..
T Consensus        75 ~~~~-~~------~~~~~~~~~~~~~~~~t~l~~~~~~~~  107 (138)
T cd08862          75 TGPA-PG------ISAVHRHEFEAKPDGGVRVTTSESLSG  107 (138)
T ss_pred             EecC-CC------EEEEEEEEEEEcCCCcEEEEEEEEeec
Confidence            6532 21      223345667887667899999988875

440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.

>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.44  E-value=2.9e-11  Score=86.18  Aligned_cols=108  Identities=15%  Similarity=0.132  Sum_probs=79.0

Q ss_pred             EEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCC-CCCCcEEEEEEecC-CceeEEEEEEEEEecccceEEE
Q 031431            6 YESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGN-GGPGSIKKFTIVEG-GQVKYAKHKIEEEDKVNLKLKY   82 (159)
Q Consensus         6 ~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~-g~~GsvR~~~~~~g-~~~~~~kErl~~~D~~~~~~~y   82 (159)
                      ++.++.|+||+++||+++ |+.+ +|+|+|. +..++   +. .++|+...+.+..+ +......+++..+|+.+ .+.|
T Consensus         2 v~~~~~i~ap~~~Vw~~~~d~~~-~~~w~~~-~~~~~---~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~~~p~~-~~~~   75 (141)
T cd07822           2 ISTEIEINAPPEKVWEVLTDFPS-YPEWNPF-VRSAT---GLSLALGARLRFVVKLPGGPPRSFKPRVTEVEPPR-RLAW   75 (141)
T ss_pred             eEEEEEecCCHHHHHHHHhcccc-ccccChh-heeEe---ccccCCCCEEEEEEeCCCCCcEEEEEEEEEEcCCC-EeEE
Confidence            688999999999999999 9988 8999996 55554   33 45687777776543 23346778889898865 5788


Q ss_pred             EEEeccccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEc
Q 031431           83 SVIEGNDLADYKLEKISFEHQWRASPNGGSICKTICKLHAK  123 (159)
Q Consensus        83 ~v~eg~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~  123 (159)
                      +...++..    ......+++|.|.++++|.++|...|...
T Consensus        76 ~~~~~~~~----~~~~~~~~~~~~~~~~~T~~~~~~~~~g~  112 (141)
T cd07822          76 RGGLPFPG----LLDGEHSFELEPLGDGGTRFVHRETFSGL  112 (141)
T ss_pred             EecCCCCc----EeeEEEEEEEEEcCCCcEEEEEeeEEEEE
Confidence            87766431    12234566778876678999999887653

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily

Probab=99.37  E-value=8.3e-11  Score=81.66  Aligned_cols=134  Identities=19%  Similarity=0.226  Sum_probs=89.3

Q ss_pred             EEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCC-CCCCcEEEEEEecCCceeEEEEEEEEEecccceEEEEE
Q 031431            7 ESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGN-GGPGSIKKFTIVEGGQVKYAKHKIEEEDKVNLKLKYSV   84 (159)
Q Consensus         7 ~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~-g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~y~v   84 (159)
                      +.++.|++|+++||+++ |+.+ +++|+|+ +.+++++++. ...|....+.+..+ .......++..+++ +..++|+.
T Consensus         2 ~~~~~i~a~~~~v~~~l~d~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~-~~~~~~~~   77 (141)
T cd07812           2 EASIEIPAPPEAVWDLLSDPER-WPEWSPG-LERVEVLGGGEGGVGARFVGGRKGG-RRLTLTSEVTEVDP-PRPGRFRV   77 (141)
T ss_pred             cEEEEeCCCHHHHHHHHhChhh-hhhhCcc-cceEEEcCCCCccceeEEEEEecCC-ccccceEEEEEecC-CCceEEEE
Confidence            57899999999999999 9998 8999997 8888877654 34566666555412 22356778887777 55688998


Q ss_pred             EeccccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCC--CCHHHHHhHHHHHHHHHHHHHH
Q 031431           85 IEGNDLADYKLEKISFEHQWRASPNGGSICKTICKLHAKGEVE--VTEEQAKAGKERVLGVVKGVEA  149 (159)
Q Consensus        85 ~eg~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~--~~~~~~~~~~~~~~~~~k~le~  149 (159)
                      ..++..   ...  ..++.+.+.++++|.++|..++.+.....  ..+...+...+.+..+++.++.
T Consensus        78 ~~~~~~---~~~--~~~~~~~~~~~~~t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (141)
T cd07812          78 TGGGGG---VDG--TGEWRLEPEGDGGTRVTYTVEYDPPGPLLKVFALLLAGALKRELAALLRALKA  139 (141)
T ss_pred             ecCCCC---cce--eEEEEEEECCCCcEEEEEEEEEecCCcchhhhhHHHHHHHHhHHHHHHHHHHh
Confidence            877653   122  33455678765589999999999976531  2222222333344445554443

SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG)

Probab=99.34  E-value=9.8e-11  Score=84.12  Aligned_cols=137  Identities=12%  Similarity=0.151  Sum_probs=82.6

Q ss_pred             EEEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEecCC--ceeEEEEEEEEEecccceE
Q 031431            4 VTYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGG--QVKYAKHKIEEEDKVNLKL   80 (159)
Q Consensus         4 ~~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~--~~~~~kErl~~~D~~~~~~   80 (159)
                      ++++.+++|++|+++||+++ |..+ +++|+|+ +.+++.++++ ....  .++...+.  ..-..+-++..+|+. +.+
T Consensus         1 m~~~~~~~i~a~~e~v~~~l~D~~~-~~~w~p~-~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~   74 (144)
T cd05018           1 MKISGEFRIPAPPEEVWAALNDPEV-LARCIPG-CESLEKIGPN-EYEA--TVKLKVGPVKGTFKGKVELSDLDPP-ESY   74 (144)
T ss_pred             CeeeeEEEecCCHHHHHHHhcCHHH-HHhhccc-hhhccccCCC-eEEE--EEEEEEccEEEEEEEEEEEEecCCC-cEE
Confidence            46899999999999999999 9998 8999997 7777766532 1111  11222121  111124455555555 456


Q ss_pred             EEEEEeccccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCC-CCCHHHHH-hHHHHHHHHHHHHHHH
Q 031431           81 KYSVIEGNDLADYKLEKISFEHQWRASPNGGSICKTICKLHAKGEV-EVTEEQAK-AGKERVLGVVKGVEAY  150 (159)
Q Consensus        81 ~y~v~eg~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~-~~~~~~~~-~~~~~~~~~~k~le~~  150 (159)
                      .++....+..   .......++++.|. +++|.++|+++|++.+.. ..+...++ ...+.+..+++.|.+.
T Consensus        75 ~~~~~~~~~~---~~~~~~~~~~l~~~-~~gT~v~~~~~~~~~g~l~~l~~~~~~~~~~~~~~~~~~~l~~~  142 (144)
T cd05018          75 TITGEGKGGA---GFVKGTARVTLEPD-GGGTRLTYTADAQVGGKLAQLGSRLIDGAARKLINQFFENLASK  142 (144)
T ss_pred             EEEEEEcCCC---ceEEEEEEEEEEec-CCcEEEEEEEEEEEccChhhhCHHHHHHHHHHHHHHHHHHHHHh
Confidence            6665532221   12234456667887 668999999999987542 22333433 3334445555555443

CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.31  E-value=8.7e-11  Score=84.97  Aligned_cols=136  Identities=11%  Similarity=0.145  Sum_probs=87.5

Q ss_pred             EEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCC--CCCCcEEEEEEec-CCceeEEEEEEEEEecccceEE
Q 031431            6 YESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGN--GGPGSIKKFTIVE-GGQVKYAKHKIEEEDKVNLKLK   81 (159)
Q Consensus         6 ~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~--g~~GsvR~~~~~~-g~~~~~~kErl~~~D~~~~~~~   81 (159)
                      ++.+++|+||+++||+++ |+.+ +|+|.|..... ....++  -++|+...+.... |++ ..+..++..+++.++ ++
T Consensus         2 i~~~~~i~ap~e~Vw~~l~d~~~-~~~W~~~~~~~-~~~~~~~~~~~G~~~~~~~~~~g~~-~~~~~~v~~~~p~~~-l~   77 (144)
T cd07825           2 VSVSRTVDAPAEAVFAVLADPRR-HPEIDGSGTVR-EAIDGPRILAVGDVFRMAMRLDGGP-YRITNHVVAFEENRL-IA   77 (144)
T ss_pred             eEEEEEEeCCHHHHHHHHhCccc-cceeCCCCccc-cccCCCccCCCCCEEEEEEEcCCCc-eEEEEEEEEECCCCE-EE
Confidence            678999999999999999 9998 89999853322 222333  3678888777654 333 345667888888766 78


Q ss_pred             EEEE-eccccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCC-CCCHHHHHhHHHHHHHHHHHHHHHH
Q 031431           82 YSVI-EGNDLADYKLEKISFEHQWRASPNGGSICKTICKLHAKGEV-EVTEEQAKAGKERVLGVVKGVEAYL  151 (159)
Q Consensus        82 y~v~-eg~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~-~~~~~~~~~~~~~~~~~~k~le~~l  151 (159)
                      |+.. .+.....     ...+++|++.++|+|.++++..|...+.. ... .............+..|++|+
T Consensus        78 ~~~~~~~~~~~~-----~~~~~~l~~~~~g~T~vt~~~~~~g~~~~~~~~-~~~~~~~~g~~~~l~~L~~~~  143 (144)
T cd07825          78 WRPGPAGQEPGG-----HRWRWELEPIGPGRTRVTETYDWSAVTDLKELL-GFPAFPEVQLEASLDRLATLA  143 (144)
T ss_pred             EEccCCCCCCCc-----eeEEEEEEECCCCcEEEEEEEeccCChhhhhcc-ccCCCCHHHHHHHHHHHHHHh
Confidence            8753 2222111     23456678887778999999988875431 111 000112235566777777765

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins

Probab=99.31  E-value=1.5e-10  Score=82.70  Aligned_cols=135  Identities=15%  Similarity=0.201  Sum_probs=87.6

Q ss_pred             EEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEecCCceeEEEEEEEEEecccceEEEEE
Q 031431            6 YESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQVKYAKHKIEEEDKVNLKLKYSV   84 (159)
Q Consensus         6 ~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~y~v   84 (159)
                      ++.+++|+||+++||+++ |+.+ +|+|+|+ +..++.....|  |+.+.+....++....+..++..+|+. +.+.|+.
T Consensus         2 i~~s~~I~a~~~~Vw~~l~d~~~-~~~w~~~-~~~~~~~~~~G--g~~~~~~~~~~g~~~~~~~~i~~~~~~-~~i~~~~   76 (139)
T cd07814           2 ITIEREFDAPPELVWRALTDPEL-LAQWFGP-TTTAEMDLRVG--GRWFFFMTGPDGEEGWVSGEVLEVEPP-RRLVFTW   76 (139)
T ss_pred             eEEEEEecCCHHHHHHHcCCHHH-HHhhhCc-CCceEEcccCC--ceEEEEEECCCCCEEeccEEEEEEcCC-CeEEEEe
Confidence            678999999999999999 9998 8999995 22222211222  666655444333335678889999976 4588988


Q ss_pred             EeccccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHHHhHHHHHHHHHHHHHHHH
Q 031431           85 IEGNDLADYKLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAKAGKERVLGVVKGVEAYL  151 (159)
Q Consensus        85 ~eg~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~~~~~~~~~~~~k~le~~l  151 (159)
                      ..++....   .....++.|.|.+ ++|.++|+.++.+...  +..............++..|.+++
T Consensus        77 ~~~~~~~~---~~~~~~~~~~~~~-~~T~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~lk~~~  137 (139)
T cd07814          77 AFSDETPG---PETTVTVTLEETG-GGTRLTLTHSGFPEED--AEQEAREGMEEGWTGTLDRLKALL  137 (139)
T ss_pred             cccCCCCC---CceEEEEEEEECC-CCEEEEEEEEccChHh--HHHHHHhCHhhHHHHHHHHHHHHh
Confidence            76642011   1234566778887 5799999999887632  122222334445556666666655

This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer

>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.26  E-value=4.1e-10  Score=82.07  Aligned_cols=112  Identities=13%  Similarity=0.047  Sum_probs=77.1

Q ss_pred             EEEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeE---EEEE--cCCCCCCcEEEEEEecCCceeEEEEEEEEEeccc
Q 031431            4 VTYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKN---VEVL--EGNGGPGSIKKFTIVEGGQVKYAKHKIEEEDKVN   77 (159)
Q Consensus         4 ~~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s---~~~~--eG~g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~   77 (159)
                      .+++.++.|++|+++||+++ |+.+ +|+|+|. +..   +...  .+..++|+...++...+.  .....++..+++. 
T Consensus         2 ~~~~~s~~I~ap~e~V~~~i~D~~~-~~~W~p~-~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~--~~~~~~v~~~~p~-   76 (150)
T cd07818           2 YRVERSIVINAPPEEVFPYVNDLKN-WPEWSPW-EKLDPDMKRTYSGPDSGVGASYSWEGNDKV--GEGEMEITESVPN-   76 (150)
T ss_pred             eEEEEEEEEeCCHHHHHHHHhCccc-CcccCch-hhcCcceEEEecCCCCCCCeEEEEecCCcc--cceEEEEEecCCC-
Confidence            36899999999999999999 9998 8999995 332   2211  233467888777655421  1334566777654 


Q ss_pred             ceEEEEEEeccccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCC
Q 031431           78 LKLKYSVIEGNDLADYKLEKISFEHQWRASPNGGSICKTICKLHAKGE  125 (159)
Q Consensus        78 ~~~~y~v~eg~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~  125 (159)
                      +.+.|+...++.+..  .  ...++.|+|. ++||.++|+.+|+....
T Consensus        77 ~~i~~~~~~~~~~~~--~--~~~~~~~~~~-~~gT~v~~~~~~~~~~~  119 (150)
T cd07818          77 ERIEYELRFIKPFEA--T--NDVEFTLEPV-GGGTKVTWGMSGELPFP  119 (150)
T ss_pred             cEEEEEEEecCCccc--c--ceEEEEEEEc-CCceEEEEEEEecCCch
Confidence            558999876544321  1  2345667888 55799999999987653

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.26  E-value=4.5e-10  Score=80.29  Aligned_cols=107  Identities=21%  Similarity=0.257  Sum_probs=74.1

Q ss_pred             EEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEecCCceeEEEEEEEEEecccceEEEE
Q 031431            5 TYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQVKYAKHKIEEEDKVNLKLKYS   83 (159)
Q Consensus         5 ~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~y~   83 (159)
                      +++.+++|+||+++||+++ |+.+ +|+|.|+ +.+++++.+.   +....+.+..|. ......++..+++.+ .+.|.
T Consensus         1 ~v~~~i~I~ap~e~V~~~~~D~~~-~~~w~~~-~~~~~~~~~~---~~~~~~~~~~g~-~~~~~~~v~~~~~~~-~i~~~   73 (139)
T cd07817           1 TVEKSITVNVPVEEVYDFWRDFEN-LPRFMSH-VESVEQLDDT---RSHWKAKGPAGL-SVEWDAEITEQVPNE-RIAWR   73 (139)
T ss_pred             CeeEEEEeCCCHHHHHHHHhChhh-hHHHhhh-hcEEEEcCCC---ceEEEEecCCCC-cEEEEEEEeccCCCC-EEEEE
Confidence            3688999999999999999 9998 8999997 8888876442   222223332233 234455666555554 48888


Q ss_pred             EEeccccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCC
Q 031431           84 VIEGNDLADYKLEKISFEHQWRASPNGGSICKTICKLHAKGE  125 (159)
Q Consensus        84 v~eg~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~  125 (159)
                      ...|..  .   .  ..+++|.|.++++|.++++..|++...
T Consensus        74 ~~~~~~--~---~--~~~~~f~~~~~~~T~vt~~~~~~~~~~  108 (139)
T cd07817          74 SVEGAD--P---N--AGSVRFRPAPGRGTRVTLTIEYEPPGG  108 (139)
T ss_pred             ECCCCC--C---c--ceEEEEEECCCCCeEEEEEEEEECCcc
Confidence            766542  2   1  234556887667899999999998753

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.25  E-value=1.3e-09  Score=79.68  Aligned_cols=108  Identities=13%  Similarity=0.179  Sum_probs=74.5

Q ss_pred             EEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEc--CCCCCCcEEEEEEecC-CceeEEEEEEEEEecccceE
Q 031431            5 TYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLE--GNGGPGSIKKFTIVEG-GQVKYAKHKIEEEDKVNLKL   80 (159)
Q Consensus         5 ~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~e--G~g~~GsvR~~~~~~g-~~~~~~kErl~~~D~~~~~~   80 (159)
                      .+..+..|+||+++||+++ |..+ +|+|+|+ ++++++++  ++.++|+..+++.... +....+.-++..+++ .+.+
T Consensus         2 ~~~~~~~i~ap~e~Vw~~~tD~~~-~~~w~~~-v~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~~~p-~~~~   78 (146)
T cd07824           2 RFHTVWRIPAPPEAVWDVLVDAES-WPDWWPG-VERVVELEPGDEAGIGARRRYTWRGLLPYRLRFELRVTRIEP-LSLL   78 (146)
T ss_pred             cceEEEEecCCHHHHHHHHhChhh-cchhhhc-eEEEEEccCCCCCCcceEEEEEEEecCCcEEEEEEEEEeecC-CcEE
Confidence            4677899999999999999 9998 8999997 88898876  3345776655443322 211234445555545 4457


Q ss_pred             EEEEEeccccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEcC
Q 031431           81 KYSVIEGNDLADYKLEKISFEHQWRASPNGGSICKTICKLHAKG  124 (159)
Q Consensus        81 ~y~v~eg~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~  124 (159)
                      ++.. +|++    +   ...+++|.|.++ ||.++++.+++..+
T Consensus        79 ~~~~-~g~~----~---~~~~~~~~~~~~-gt~vt~~~~~~~~~  113 (146)
T cd07824          79 EVRA-SGDL----E---GVGRWTLAPDGS-GTVVRYDWEVRTTK  113 (146)
T ss_pred             EEEE-EEee----e---EEEEEEEEEcCC-CEEEEEEEEEEcCH
Confidence            8875 5653    1   124556788644 79999999999854

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains

Probab=99.24  E-value=1.2e-09  Score=80.59  Aligned_cols=134  Identities=13%  Similarity=0.174  Sum_probs=83.7

Q ss_pred             EEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCC-CCCcEEEEEE-ecCCceeEEEEEEEEEecccceEE
Q 031431            5 TYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNG-GPGSIKKFTI-VEGGQVKYAKHKIEEEDKVNLKLK   81 (159)
Q Consensus         5 ~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g-~~GsvR~~~~-~~g~~~~~~kErl~~~D~~~~~~~   81 (159)
                      ..+.+++|++||++||+++ |..+ .|.|+|. +.++++++.++ +.|.--.+.. ..|....+..|+  ..|...+++.
T Consensus         2 ~~~~si~i~a~~~~v~~lvaDv~~-~P~~~~~-~~~~~~l~~~~~~~~~r~~i~~~~~g~~~~w~s~~--~~~~~~~~i~   77 (146)
T cd08860           2 RTDNSIVIDAPLDLVWDMTNDIAT-WPDLFSE-YAEAEVLEEDGDTVRFRLTMHPDANGTVWSWVSER--TLDPVNRTVR   77 (146)
T ss_pred             cceeEEEEcCCHHHHHHHHHhhhh-hhhhccc-eEEEEEEEecCCeEEEEEEEEeccCCEEEEEEEEE--EecCCCcEEE
Confidence            4678999999999999999 9999 8999997 88888877643 3442221222 223222343343  3678888887


Q ss_pred             EE-EEeccccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHHH-hHHHHHHHHHHHHHH
Q 031431           82 YS-VIEGNDLADYKLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAK-AGKERVLGVVKGVEA  149 (159)
Q Consensus        82 y~-v~eg~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~~-~~~~~~~~~~k~le~  149 (159)
                      +. ...|++    ..  ...+++|+|.++ ||.|++..+|+..++.+.....+. +........++.|-+
T Consensus        78 ~~~~~~~p~----~~--m~~~W~f~~~~~-gT~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lk~  140 (146)
T cd08860          78 ARRVETGPF----AY--MNIRWEYTEVPE-GTRMRWVQDFEMKPGAPVDDAAMTDRLNTNTRAQMARIKK  140 (146)
T ss_pred             EEEecCCCc----ce--eeeeEEEEECCC-CEEEEEEEEEEECCCCccchHHHHHHHhcccHHHHHHHHH
Confidence            73 334432    22  234556788865 599999999998755443333333 222333444444433

This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.

>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.22  E-value=1.2e-09  Score=79.81  Aligned_cols=139  Identities=15%  Similarity=0.189  Sum_probs=81.2

Q ss_pred             EEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEecCCceeEE--EEEEEEEecccceEEE
Q 031431            6 YESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQVKYA--KHKIEEEDKVNLKLKY   82 (159)
Q Consensus         6 ~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~~~~--kErl~~~D~~~~~~~y   82 (159)
                      ++.+++|++||++||+++ |..+ ++.|+|+ +++++.+ |++.  ..-.+++..|.-...+  +=++..++++.+++.+
T Consensus         1 ~~~~~~v~a~pe~vw~~l~D~~~-~~~~~pg-~~~~~~~-~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   75 (146)
T cd07823           1 LENEFTVPAPPDRVWALLLDIER-VAPCLPG-ASLTEVE-GDDE--YKGTVKVKLGPISASFKGTARLLEDDEAARRAVL   75 (146)
T ss_pred             CCceEEecCCHHHHHHHhcCHHH-HHhcCCC-ceecccc-CCCe--EEEEEEEEEccEEEEEEEEEEEEeccCCCcEEEE
Confidence            357899999999999999 9998 8999997 7777653 3211  1122333322211112  1245556646777776


Q ss_pred             EEEeccccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCC-CCCHHHHH-hHHHHHHHHHHHHHHHH
Q 031431           83 SVIEGNDLADYKLEKISFEHQWRASPNGGSICKTICKLHAKGEV-EVTEEQAK-AGKERVLGVVKGVEAYL  151 (159)
Q Consensus        83 ~v~eg~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~-~~~~~~~~-~~~~~~~~~~k~le~~l  151 (159)
                      +.-..+.-.. ..-+..+++++.|. +++|.++|.++++..+.. ......++ .+++.+..+++.|.+.+
T Consensus        76 ~~~g~~~~~~-g~~~~~~~~~l~~~-~~gT~v~~~~~~~~~g~l~~l~~~~v~~~~~~~~~~~~~~l~~~~  144 (146)
T cd07823          76 EATGKDARGQ-GTAEATVTLRLSPA-GGGTRVTVDTDLALTGKLAQFGRGGIGDVAGRLLAQFAANLEARL  144 (146)
T ss_pred             EEEEecCCCc-ceEEEEEEEEEEec-CCcEEEEEEEEEEEeeEhHHhChhHHHHHHHHHHHHHHHHHHHHh
Confidence            6543111101 12234566677884 568999999999876542 23333344 34444555666555543

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp

Probab=99.15  E-value=2.7e-09  Score=75.93  Aligned_cols=125  Identities=18%  Similarity=0.308  Sum_probs=79.9

Q ss_pred             EcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEecCCceeEEEEEEEEEecccceEEEEEEecccc
Q 031431           12 YAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQVKYAKHKIEEEDKVNLKLKYSVIEGNDL   90 (159)
Q Consensus        12 i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~y~v~eg~~l   90 (159)
                      |+||+++||+++ |..+ +|.|+|. ++++++++.++. +..-.+....++.......++. .+...+ +.+..++|++ 
T Consensus         1 V~ap~~~V~~~i~D~e~-~~~~~p~-~~~v~vl~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~g~~-   74 (130)
T PF03364_consen    1 VNAPPEEVWSVITDYEN-YPRFFPP-VKEVRVLERDGD-GMRARWEVKFGGIKRSWTSRVT-EDPPER-IRFEQISGPF-   74 (130)
T ss_dssp             ESS-HHHHHHHHTTGGG-HHHHCTT-EEEEEEEEEECC-EEEEEEEECTTTTCEEEEEEEE-EECTTT-EEEESSETTE-
T ss_pred             CCCCHHHHHHHHHHHHH-HHHhCCC-CceEEEEEeCCC-eEEEEEEEecCCEEEEEEEEEE-EEEeee-eeeeecCCCc-
Confidence            789999999999 9998 8999996 889999988754 3333455554433234455544 344444 7778877764 


Q ss_pred             CCCceeEEEEEEEEEECCC--CCeEEEEEEEEEEcCCCCCCHHHHH-hHHHHHHHHHHHH
Q 031431           91 ADYKLEKISFEHQWRASPN--GGSICKTICKLHAKGEVEVTEEQAK-AGKERVLGVVKGV  147 (159)
Q Consensus        91 ~~Y~~~~~~~~~~~~p~~~--g~t~v~W~~~~e~~~~~~~~~~~~~-~~~~~~~~~~k~l  147 (159)
                         +.+..  +++++|.++  |+|.++++.+++.....+++...++ ...+....++++|
T Consensus        75 ---~~~~g--~W~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (130)
T PF03364_consen   75 ---KSFEG--SWRFEPLGGNEGGTRTRVTYDYEVDPPGPLPGFLARQFFRRDLRQMLEAF  129 (130)
T ss_dssp             ---EEEEE--EEEEEEETTECCEEEEEEEEEEEEETSSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---hhcEE--EEEEEECCCCcCCCEEEEEEEEEEecCcHhHHHHHHHHHHHHHHHHHHhh
Confidence               55555  445688754  3688888888887655555444433 2333334444444

are involved in polyketide (linear poly-beta-ketones) synthesis.; PDB: 1T17_A 3GGN_B 2KCZ_A 2D4R_B 2REZ_A 2RES_A 3TVQ_A 2RER_A 2KF2_A 3TL1_A ....

>COG3427 Carbon monoxide dehydrogenase subunit G, CoxG [Energy production and conversion]

Probab=99.15  E-value=1.2e-09  Score=80.31  Aligned_cols=142  Identities=15%  Similarity=0.215  Sum_probs=95.3

Q ss_pred             EEEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEecCCceeEEEEEEEEEecccceEEE
Q 031431            4 VTYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQVKYAKHKIEEEDKVNLKLKY   82 (159)
Q Consensus         4 ~~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~y   82 (159)
                      +.++.++.|++|+++||+.+ |... +...+|+ ++|++. +|+.-.+.+| +.+++=...-..+=++..+|++.++++.
T Consensus         1 M~~~G~f~V~~p~e~Vw~~L~dpe~-~a~ciPG-~qs~e~-~g~e~~~~v~-l~ig~l~~~~~g~~~~~~v~~~~~~~~i   76 (146)
T COG3427           1 MDYEGTFRVAAPPEAVWEFLNDPEQ-VAACIPG-VQSVET-NGDEYTAKVK-LKIGPLKGTFSGRVRFVNVDEPPRSITI   76 (146)
T ss_pred             CcccceEEecCCHHHHHHHhcCHHH-HHhhcCC-cceeee-cCCeEEEEEE-EeecceeEEEEEEEEEccccCCCcEEEE
Confidence            35788999999999999999 8887 7899998 999984 5662111111 1221111011234466777889998877


Q ss_pred             EEEeccccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCC-CCCCHHHHH-hHHHHHHHHHHHHHHHHhh
Q 031431           83 SVIEGNDLADYKLEKISFEHQWRASPNGGSICKTICKLHAKGE-VEVTEEQAK-AGKERVLGVVKGVEAYLQA  153 (159)
Q Consensus        83 ~v~eg~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~-~~~~~~~~~-~~~~~~~~~~k~le~~l~~  153 (159)
                      ..-.|.. .  .....++.+.+.|.+++ |++.|.+.-+-.+. ...-.+.++ .+.+++..++..|..+|.+
T Consensus        77 ~g~G~~~-~--g~~~~~~~v~l~~~g~g-t~v~w~~~~~~gg~laqlGsr~i~~~~~kli~~~~~~l~~~l~~  145 (146)
T COG3427          77 NGSGGGA-A--GFADGTVDVQLEPSGEG-TRVNWFADANVGGKLAQLGSRLIDSVARKLINRFFDCLSSELAA  145 (146)
T ss_pred             Eeecccc-c--ceeeeeeEEEEEEcCCC-cEEEEEEEccccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            7655333 1  23445677888998775 99999998877654 234445555 5556778888888887754

>cd07820 SRPBCC_3 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.14  E-value=2.1e-09  Score=77.78  Aligned_cols=107  Identities=16%  Similarity=0.242  Sum_probs=78.2

Q ss_pred             EEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCC-C--CCCcEEEEEEecCC-ceeEEEEEEEEEecccceE
Q 031431            6 YESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGN-G--GPGSIKKFTIVEGG-QVKYAKHKIEEEDKVNLKL   80 (159)
Q Consensus         6 ~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~-g--~~GsvR~~~~~~g~-~~~~~kErl~~~D~~~~~~   80 (159)
                      ++.+++|+||+++||+.+ |..+ +|+|+|+ +.++++++.+ |  .+|+.-.+.+..++ +..+ +-+++.+++.. .+
T Consensus         1 ~~~s~~I~ap~e~V~~~~~d~~~-~~~~~p~-~~~v~~~~~~~~~~~~G~~~~~~~~~~~~~~~w-~~~it~~~p~~-~f   76 (137)
T cd07820           1 LERSTVIPAPIEEVFDFHSRPDN-LERLTPP-WLEFAVLGRTPGLIYGGARVTYRLRHFGIPQRW-TTEITEVEPPR-RF   76 (137)
T ss_pred             CeEEEEcCCCHHHHHHHHcCcch-HHhcCCC-CCCeEEEecCCCcccCCcEEEEEEEecCCceEE-EEEEEEEcCCC-eE
Confidence            468899999999999999 9998 8999997 7788887433 2  46888888877554 3334 44556666544 57


Q ss_pred             EEEEEeccccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEc
Q 031431           81 KYSVIEGNDLADYKLEKISFEHQWRASPNGGSICKTICKLHAK  123 (159)
Q Consensus        81 ~y~v~eg~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~  123 (159)
                      +...+.|.+    .....  +..|.|.++ ||.++++.+|+..
T Consensus        77 ~~~~~~G~~----~~w~h--~~~f~~~~~-gT~vt~~v~~~~p  112 (137)
T cd07820          77 VDEQVSGPF----RSWRH--THRFEAIGG-GTLMTDRVEYRLP  112 (137)
T ss_pred             EEEeccCCc----hhCEE--EEEEEECCC-ceEEEEEEEEeCC
Confidence            888777754    22333  345577755 7999999999994

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>PRK10724 hypothetical protein; Provisional

Probab=99.08  E-value=9.1e-09  Score=77.04  Aligned_cols=133  Identities=11%  Similarity=0.090  Sum_probs=89.9

Q ss_pred             EEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEecCCceeEEEEEEEEEecccceEEEE
Q 031431            5 TYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQVKYAKHKIEEEDKVNLKLKYS   83 (159)
Q Consensus         5 ~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~y~   83 (159)
                      .++.++.|++|++++|+++ |..+ .|+|+|. .+++++++-++. +.+..++.+-++-......|.. +++++ ++.+.
T Consensus        16 ~i~~~~~v~~s~~~v~~lv~Dve~-yp~flp~-~~~s~vl~~~~~-~~~a~l~v~~~g~~~~f~srv~-~~~~~-~I~~~   90 (158)
T PRK10724         16 QISRTALVPYSAEQMYQLVNDVQS-YPQFLPG-CTGSRVLESTPG-QMTAAVDVSKAGISKTFTTRNQ-LTSNQ-SILMQ   90 (158)
T ss_pred             eEEEEEEecCCHHHHHHHHHHHHH-HHHhCcc-cCeEEEEEecCC-EEEEEEEEeeCCccEEEEEEEE-ecCCC-EEEEE
Confidence            6888999999999999999 9998 8999997 777777765432 3344455543332344445544 45544 68999


Q ss_pred             EEeccccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHHH-hHHHHHHHHHHHHHHH
Q 031431           84 VIEGNDLADYKLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAK-AGKERVLGVVKGVEAY  150 (159)
Q Consensus        84 v~eg~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~~-~~~~~~~~~~k~le~~  150 (159)
                      .++|++    +....  +++|.|.++++|.|++..+|+....  .....++ ...+.+..|.+++++-
T Consensus        91 ~~~GpF----~~l~g--~W~f~p~~~~~t~V~~~l~fef~s~--l~~~~~~~~~~~~~~~mv~AF~~R  150 (158)
T PRK10724         91 LVDGPF----KKLIG--GWKFTPLSQEACRIEFHLDFEFTNK--LIELAFGRVFKELASNMVQAFTVR  150 (158)
T ss_pred             ecCCCh----hhccc--eEEEEECCCCCEEEEEEEEEEEchH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999964    33333  4566888777899999999997642  2222222 3445556677776653

>PF06240 COXG: Carbon monoxide dehydrogenase subunit G (CoxG); InterPro: IPR010419 The CO dehydrogenase structural genes coxMSL are flanked by nine accessory genes arranged as the cox gene cluster

Probab=98.96  E-value=5.3e-08  Score=71.11  Aligned_cols=133  Identities=14%  Similarity=0.182  Sum_probs=78.9

Q ss_pred             EEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEecCC-ce-eEEEEEEEEEecccceEEEEEE
Q 031431            9 EETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGG-QV-KYAKHKIEEEDKVNLKLKYSVI   85 (159)
Q Consensus         9 e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~-~~-~~~kErl~~~D~~~~~~~y~v~   85 (159)
                      +++|++|+++||+.+ |..+ +-..+|+ +++++.+. +.-.+.+   +..-|. +. -..+=++..+|++++.. ..+-
T Consensus         2 s~~v~a~~~~vw~~l~D~~~-l~~ciPG-~~~~e~~~-~~~~~~~---~v~vG~i~~~~~g~~~~~~~~~~~~~~-~~~~   74 (140)
T PF06240_consen    2 SFEVPAPPEKVWAFLSDPEN-LARCIPG-VESIEKVG-DEYKGKV---KVKVGPIKGTFDGEVRITEIDPPESYT-LEFE   74 (140)
T ss_dssp             EEEECS-HHHHHHHHT-HHH-HHHHSTT-EEEEEEEC-TEEEEEE---EEESCCCEEEEEEEEEEEEEETTTEEE-EEEE
T ss_pred             cEEecCCHHHHHHHhcCHHH-HHhhCCC-cEEeeecC-cEEEEEE---EEEeccEEEEEEEEEEEEEcCCCcceE-eeee
Confidence            689999999999999 9887 7899998 88988765 4111111   111111 00 12233566677777752 3433


Q ss_pred             eccccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCC-CCCCHHHHH-hHHHHHHHHHHHHHHHH
Q 031431           86 EGNDLADYKLEKISFEHQWRASPNGGSICKTICKLHAKGE-VEVTEEQAK-AGKERVLGVVKGVEAYL  151 (159)
Q Consensus        86 eg~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~-~~~~~~~~~-~~~~~~~~~~k~le~~l  151 (159)
                      ..+....   ....+.+++...++++|.+.|+++++..+- .......++ .+.+....+++.|++.|
T Consensus        75 g~g~~~~---~~~~~~~~~~~~~~~~T~v~~~~~~~~~G~la~~g~~~i~~~~~~l~~~f~~~l~~~l  139 (140)
T PF06240_consen   75 GRGRGGG---SSASANITLSLEDDGGTRVTWSADVEVGGPLASLGQRLIESVARRLIEQFFENLERKL  139 (140)
T ss_dssp             EEECTCC---EEEEEEEEEEECCCTCEEEEEEEEEEEECHHHHC-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCccc---eEEEEEEEEEcCCCCCcEEEEEEEEEEccCHHHhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3333222   234445555665555699999999998765 344455555 44455566666666544

The cox genes are specifically and coordinately transcribed under chemolithoautotrophic conditions in the presence of CO as carbon and energy source [].; PDB: 2NS9_A 2PCS_A.

>cd08899 SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=98.81  E-value=1.5e-07  Score=69.85  Aligned_cols=129  Identities=18%  Similarity=0.142  Sum_probs=84.0

Q ss_pred             cEEEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEecCCceeEEEEEEEEEecccceEE
Q 031431            3 VVTYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQVKYAKHKIEEEDKVNLKLK   81 (159)
Q Consensus         3 ~~~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~   81 (159)
                      ..++..++.|+||+++||+++ |+.+ ++.|.|. .      ..+-.+|....+.+...+. .....++..+|+.++ +.
T Consensus        10 ~~~i~~~~~i~Ap~e~Vw~altdp~~-~~~W~~~-~------~~~~~~G~~~~~~~~~~~~-~~~~~~v~e~~p~~~-l~   79 (157)
T cd08899          10 GATLRFERLLPAPIEDVWAALTDPER-LARWFAP-G------TGDLRVGGRVEFVMDDEEG-PNATGTILACEPPRL-LA   79 (157)
T ss_pred             CeEEEEEEecCCCHHHHHHHHcCHHH-HHhhcCC-C------CCCcccCceEEEEecCCCC-CccceEEEEEcCCcE-EE
Confidence            457899999999999999999 9887 8999984 2      1222345555555543211 234567777877754 67


Q ss_pred             EEEEeccccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHHHhHHHHHHHHHHHHHHHHhhCC
Q 031431           82 YSVIEGNDLADYKLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQANP  155 (159)
Q Consensus        82 y~v~eg~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~~~~~~~~~~~~k~le~~l~~~~  155 (159)
                      |+...++ .      ....+++|++.+ ++|.++...++.+...      ......++-..++..|.+|+-+.+
T Consensus        80 ~~~~~~~-~------~~~~~~~l~~~~-~gT~v~~~~~~~~~~~------~~~~~~~GW~~~L~~Lk~~~e~~~  139 (157)
T cd08899          80 FTWGEGG-G------ESEVRFELAPEG-DGTRLTLTHRLLDERF------GAGAVGAGWHLCLDVLEAALEGGP  139 (157)
T ss_pred             EEecCCC-C------CceEEEEEEEcC-CCEEEEEEEeccCchh------hhhhhcccHHHHHHHHHHHHcCCC
Confidence            8765443 1      123456677764 5799988877765331      112223455778888888887765

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd08898 SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=98.73  E-value=3.5e-07  Score=65.85  Aligned_cols=138  Identities=14%  Similarity=0.096  Sum_probs=76.9

Q ss_pred             EEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEecCCceeEEEEEEEEEecccceEEEE
Q 031431            5 TYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQVKYAKHKIEEEDKVNLKLKYS   83 (159)
Q Consensus         5 ~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~y~   83 (159)
                      +++.+++|+||+++||+++ |... +++|.|...  .....|.+..|.   +.+..+ ......-++..+++.++ +.|+
T Consensus         2 ~i~~~i~i~a~~e~Vw~~~td~~~-~~~W~~~~~--~~~~~~~~~~g~---~~~~~~-~~~~~~~~i~~~~p~~~-l~~~   73 (145)
T cd08898           2 RIERTILIDAPRERVWRALTDPEH-FGQWFGVKL--GPFVVGEGATGE---ITYPGY-EHGVFPVTVVEVDPPRR-FSFR   73 (145)
T ss_pred             eeEEEEEecCCHHHHHHHhcChhh-hhhcccccC--CCcccCCcceeE---EecCCC-CccceEEEEEEeCCCcE-EEEE
Confidence            5789999999999999999 9887 899998632  111112222232   333221 11133456777777766 5777


Q ss_pred             EEeccc---cCCCceeEEEEEEEEEECCCCCeEEEEEEE-EEEcCCCCCCHHHHHhHHHHHHHHHHHHHHHHh
Q 031431           84 VIEGND---LADYKLEKISFEHQWRASPNGGSICKTICK-LHAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQ  152 (159)
Q Consensus        84 v~eg~~---l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~-~e~~~~~~~~~~~~~~~~~~~~~~~k~le~~l~  152 (159)
                      ......   .+.-.......+++|.+.+ ++|.++++-. |...++... ........++-..++..|++||-
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gT~vt~~~~~~~~~~~~~~-~~~~~~~~~gw~~~l~~L~~~le  144 (145)
T cd08898          74 WHPPAIDPGEDYSAEPSTLVEFTLEPIA-GGTLLTVTESGFDALPAERR-AEAYRMNEGGWDEQLENLVAYVE  144 (145)
T ss_pred             ecCCCcccccccCCCCceEEEEEEEecC-CcEEEEEEEcCCCCCChHHH-HHHHHhhhhhHHHHHHHHHHHhc
Confidence            543320   0000011233566778875 5699999866 432221000 01122233455778888888874

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>COG5637 Predicted integral membrane protein [Function unknown]

Probab=98.67  E-value=2.7e-07  Score=69.95  Aligned_cols=107  Identities=14%  Similarity=0.268  Sum_probs=82.6

Q ss_pred             EEEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEe--cCCceeEEEEEEEEEecccceE
Q 031431            4 VTYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIV--EGGQVKYAKHKIEEEDKVNLKL   80 (159)
Q Consensus         4 ~~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~--~g~~~~~~kErl~~~D~~~~~~   80 (159)
                      ..++.+++|++|+|+||... |+.+ +|.||-+ +.|+++.+..-     -+|+..  .|..++|--| |+ -|.++..|
T Consensus        70 i~v~~~V~I~kPae~vy~~W~dLe~-lP~~Mkh-l~SVkVlddkr-----SrW~~~ap~g~~v~Wea~-it-~d~~~e~I  140 (217)
T COG5637          70 IEVEVQVTIDKPAEQVYAYWRDLEN-LPLWMKH-LDSVKVLDDKR-----SRWKANAPLGLEVEWEAE-IT-KDIPGERI  140 (217)
T ss_pred             eEEEEEEEeCChHHHHHHHHHhhhh-hhHHHHh-hceeeccCCCc-----cceeEcCCCCceEEEeeh-hh-ccCCCcEE
Confidence            67899999999999999999 9999 8999985 99999876642     345544  3444444333 33 57788889


Q ss_pred             EEEEEeccccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCC
Q 031431           81 KYSVIEGNDLADYKLEKISFEHQWRASPNGGSICKTICKLHAKGE  125 (159)
Q Consensus        81 ~y~v~eg~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~  125 (159)
                      .+.=++|.-+++ .     ..|.|.+.+++.|.|+.+.+|.+-++
T Consensus       141 ~W~Sl~Ga~v~N-s-----G~VrF~~~pg~~t~V~v~lsY~~Pgg  179 (217)
T COG5637         141 QWESLPGARVEN-S-----GAVRFYDAPGDSTEVKVTLSYRPPGG  179 (217)
T ss_pred             eeecCCCCcCCC-C-----ccEEeeeCCCCceEEEEEEEecCCcc
Confidence            999999976665 2     24567888777899999999988765

>cd08900 SRPBCC_CalC_Aha1-like_7 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=98.63  E-value=5.1e-06  Score=60.31  Aligned_cols=136  Identities=15%  Similarity=0.123  Sum_probs=76.4

Q ss_pred             EEEEEEEcCCHHHHHhhh-cCCCCcccccCC-ceeEEEEEcCCCCCCcEEEEEEe-cCCceeEEEEEEEEEecccceEEE
Q 031431            6 YESEETYAVPPARMFNAL-ASDNLPSKIFPD-VVKNVEVLEGNGGPGSIKKFTIV-EGGQVKYAKHKIEEEDKVNLKLKY   82 (159)
Q Consensus         6 ~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~-~v~s~~~~eG~g~~GsvR~~~~~-~g~~~~~~kErl~~~D~~~~~~~y   82 (159)
                      ++.+..++||+++||+++ |... +.+|+.. .--.+...+.+-.+|..-.+.+. .++......=++.++|+.++ +.|
T Consensus         2 ~~i~r~~~ap~e~Vw~a~tdp~~-l~~W~~~~~~~~~~~~~~d~~~Gg~~~~~~~~~~g~~~~~~g~~~~~~p~~~-l~~   79 (143)
T cd08900           2 FTLERTYPAPPERVFAAWSDPAA-RARWFVPSPDWTVLEDEFDFRVGGREVSRGGPKGGPEITVEARYHDIVPDER-IVY   79 (143)
T ss_pred             EEEEEEeCCCHHHHHHHhcCHHH-HHhcCCCCCCCceeeeEEecCCCCEEEEEEECCCCCEEeeeEEEEEecCCce-EEE
Confidence            667889999999999999 8776 6777743 11112223333233434333332 23332233446777887776 566


Q ss_pred             EEE--eccccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHHHhHHHHHHHHHHHHHHHHh
Q 031431           83 SVI--EGNDLADYKLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQ  152 (159)
Q Consensus        83 ~v~--eg~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~~~~~~~~~~~~k~le~~l~  152 (159)
                      +..  .++.    .....+++++|.+.+ |+|.++.+-..-...+.    +......++-..++..|+++|.
T Consensus        80 t~~~~~~~~----~~~~s~v~~~l~~~~-~gT~l~~~~~~~~~~~~----~~~~~~~~GW~~~l~~L~~~l~  142 (143)
T cd08900          80 TYTMHIGGT----LLSASLATVEFAPEG-GGTRLTLTEQGAFLDGD----DDPAGREQGTAALLDNLAAELE  142 (143)
T ss_pred             EEeeccCCc----cccceEEEEEEEECC-CCEEEEEEEEEeccccc----chhhhHHHHHHHHHHHHHHHHh
Confidence            643  2221    111234667778874 57988888665322211    1112223455778888888874

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd07826 SRPBCC_CalC_Aha1-like_9 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=98.62  E-value=2.6e-06  Score=62.06  Aligned_cols=138  Identities=10%  Similarity=0.033  Sum_probs=77.3

Q ss_pred             EEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEe-cCCceeEEEEEEEEEecccceEEE
Q 031431            5 TYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIV-EGGQVKYAKHKIEEEDKVNLKLKY   82 (159)
Q Consensus         5 ~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~-~g~~~~~~kErl~~~D~~~~~~~y   82 (159)
                      +++.+.+++||+++||+++ |... +.+|....--.+...+.|-.+|..-.+.+. +++....+.=++.++++.++ +.|
T Consensus         1 ~l~i~r~~~ap~e~Vw~a~Tdpe~-l~~W~~p~~~~~~~~~~d~r~GG~~~~~~~~~~g~~~~~~g~~~ei~p~~~-l~~   78 (142)
T cd07826           1 EIVITREFDAPRELVFRAHTDPEL-VKRWWGPRGLTMTVCECDIRVGGSYRYVHRAPDGEEMGFHGVYHEVTPPER-IVQ   78 (142)
T ss_pred             CEEEEEEECCCHHHHHHHhCCHHH-HhhccCCCCCcceEEEEeccCCCEEEEEEECCCCCEecceEEEEEEcCCCE-EEE
Confidence            3678899999999999999 8776 666665421122223344334444444443 23322233446777887766 455


Q ss_pred             EEE-eccccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHHH-hHHHHHHHHHHHHHHHHhh
Q 031431           83 SVI-EGNDLADYKLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAK-AGKERVLGVVKGVEAYLQA  153 (159)
Q Consensus        83 ~v~-eg~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~~-~~~~~~~~~~k~le~~l~~  153 (159)
                      +-. ++.. ..    ....+++|.+.+ |+|.++.+..|....   ..+.... ...++-..++..|++||.+
T Consensus        79 t~~~~~~~-~~----~s~v~~~l~~~~-~gT~l~l~~~~~~~~---~~~~~~~~~~~~Gw~~~l~~L~~~l~~  142 (142)
T cd07826          79 TEEFEGLP-DG----VALETVTFTELG-GRTRLTATSRYPSKE---ARDGVLASGMEEGMEESYDRLDELLAS  142 (142)
T ss_pred             EeEecCCC-CC----ceEEEEEEEECC-CCEEEEEEEEeCCHH---HHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence            432 2221 11    234566778874 679999876653211   1011111 2334557788888888853

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd08893 SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins; some contain an N-terminal GntR family winged HTH DNA-binding domain

Probab=98.62  E-value=2.2e-06  Score=60.89  Aligned_cols=134  Identities=9%  Similarity=0.026  Sum_probs=75.2

Q ss_pred             EEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEecCCceeEEEEEEEEEecccceEEEE
Q 031431            5 TYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQVKYAKHKIEEEDKVNLKLKYS   83 (159)
Q Consensus         5 ~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~y~   83 (159)
                      |++.++.|+|||++||+++ |... ++.|.+...     ..++-.+|.--.+..... ....+.=++.++++.++ +.|+
T Consensus         1 ~~~~~~~i~ap~e~Vw~~~td~~~-~~~W~~~~~-----~~~~~~~G~~~~~~~~~~-~~~~~~~~v~~~~~~~~-l~~~   72 (136)
T cd08893           1 KFVYVTYIRATPEKVWQALTDPEF-TRQYWGGTT-----VESDWKVGSAFEYRRGDD-GTVDVEGEVLESDPPRR-LVHT   72 (136)
T ss_pred             CeEEEEEecCCHHHHHHHHcCchh-hhheecccc-----cccCCcCCCeEEEEeCCC-cccccceEEEEecCCCe-EEEE
Confidence            5788999999999999999 9887 899987622     123323343333333321 11123446666775554 6676


Q ss_pred             EEeccccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHHHhHHHHHHHHHHHHHHHHh
Q 031431           84 VIEGNDLADYKLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQ  152 (159)
Q Consensus        84 v~eg~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~~~~~~~~~~~~k~le~~l~  152 (159)
                      ...+.....=.......++.|.+.++ +|.++.+.+-.+.+.     .......+.-..+++.|.++|-
T Consensus        73 ~~~~~~~~~~~~~~~~v~~~l~~~~~-~t~l~~~~~~~~~~~-----~~~~~~~~gw~~~l~~Lk~~~e  135 (136)
T cd08893          73 WRAVWDPEMAAEPPSRVTFEIEPVGD-VVKLTVTHDGFPPGS-----PTLEGVSGGWPAILSSLKTLLE  135 (136)
T ss_pred             EecCCCcccCCCCCEEEEEEEEecCC-cEEEEEEecCCCCch-----hHHHhhhcCHHHHHHHHHHHhc
Confidence            54322210001112345666788644 677776655432221     1222333455678888888763

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. Some proteins in this subgroup contain an N-terminal winged helix-turn-helix DNA-binding domain found in the GntR family of proteins which include bacterial transcriptional regulators and their putative homologs from eukaryota and archaea.

>cd08896 SRPBCC_CalC_Aha1-like_3 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=98.60  E-value=1.8e-05  Score=57.65  Aligned_cols=134  Identities=11%  Similarity=0.099  Sum_probs=72.7

Q ss_pred             EEEEEEEcCCHHHHHhhh-cCCCCcccccCCc---ee--EEEEEcCCCCCCcEEEEEE-ecCCceeEEEEEEEEEecccc
Q 031431            6 YESEETYAVPPARMFNAL-ASDNLPSKIFPDV---VK--NVEVLEGNGGPGSIKKFTI-VEGGQVKYAKHKIEEEDKVNL   78 (159)
Q Consensus         6 ~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~---v~--s~~~~eG~g~~GsvR~~~~-~~g~~~~~~kErl~~~D~~~~   78 (159)
                      +..++.|+||+++||+++ |... +.+|++..   +.  +.+...|    |..+ +.+ .+++..-...=++.++|+.++
T Consensus         2 l~i~r~i~a~~e~Vw~a~t~pe~-~~~W~~p~~~~~~~~~~d~~~G----G~~~-~~~~~~~g~~~~~~g~v~~i~p~~~   75 (146)
T cd08896           2 LVLSRTIDAPRELVWRAWTEPEL-LKQWFCPKPWTTEVAELDLRPG----GAFR-TVMRGPDGEEFPNPGCFLEVVPGER   75 (146)
T ss_pred             eEEEEEeCCCHHHHHHHcCCHHH-HhccCCCCCccceEEEEEeecC----cEEE-EEEECCCCCEecceEEEEEEeCCCE
Confidence            567899999999999999 8776 56665421   21  2333223    3333 333 233322223456788888877


Q ss_pred             eEEEE--EEeccccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHHH-hHHHHHHHHHHHHHHHHh
Q 031431           79 KLKYS--VIEGNDLADYKLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAK-AGKERVLGVVKGVEAYLQ  152 (159)
Q Consensus        79 ~~~y~--v~eg~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~~-~~~~~~~~~~k~le~~l~  152 (159)
                       +.|+  +.++..... .. ....+++|++. +++|.++.+..+....   ..+.... ...++-..++..|++||.
T Consensus        76 -l~~t~~~~~~~~~~~-~~-~~~v~~~~~~~-~~gT~Ltl~~~~~~~~---~~~~~~~~~~~~GW~~~l~~L~~~l~  145 (146)
T cd08896          76 -LVFTDALTPGWRPAE-KP-FMTAIITFEDE-GGGTRYTARARHWTEA---DRKQHEEMGFHDGWGTAADQLAALAE  145 (146)
T ss_pred             -EEEEEeecCCcCCCC-CC-cEEEEEEEEec-CCcEEEEEEEEeCCHH---HHHHHHHcCHHHHHHHHHHHHHHHHh
Confidence             4565  322211111 11 13456677886 4579988764432110   0011111 113455778888888875

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd08894 SRPBCC_CalC_Aha1-like_1 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=98.55  E-value=4.3e-06  Score=60.50  Aligned_cols=133  Identities=16%  Similarity=0.160  Sum_probs=74.2

Q ss_pred             EEEEEEEcCCHHHHHhhh-cCCCCccccc-CCceeEEEEEcCCCCCCcEEEEEE-ecCCceeEEEEEEEEEecccceEEE
Q 031431            6 YESEETYAVPPARMFNAL-ASDNLPSKIF-PDVVKNVEVLEGNGGPGSIKKFTI-VEGGQVKYAKHKIEEEDKVNLKLKY   82 (159)
Q Consensus         6 ~~~e~~i~apa~~vW~~~-d~~~~lp~~~-P~~v~s~~~~eG~g~~GsvR~~~~-~~g~~~~~~kErl~~~D~~~~~~~y   82 (159)
                      ++.++.|+||+++||+++ |... +.+|+ |..+.. ...+.+..+|..-.+.+ .+++..-...=++.++++.++ +.|
T Consensus         2 l~~~r~i~ap~e~Vw~a~t~p~~-l~~W~~p~~~~~-~~~~~d~~~GG~~~~~~~~~~g~~~~~~g~v~e~~p~~~-l~~   78 (139)
T cd08894           2 IVTTRVIDAPRDLVFAAWTDPEH-LAQWWGPEGFTN-TTHEFDLRPGGRWRFVMHGPDGTDYPNRIVFLEIEPPER-IVY   78 (139)
T ss_pred             EEEEEEeCCCHHHHHHHhCCHHH-HhhccCcCCCcc-eEEEEEecCCCEEEEEEECCCCCEecceEEEEEEcCCCE-EEE
Confidence            677899999999999999 8776 67775 432321 11223323344333333 223321122346777888776 677


Q ss_pred             EEEeccccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHHH-hHHHHHHHHHHHHHHHHh
Q 031431           83 SVIEGNDLADYKLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAK-AGKERVLGVVKGVEAYLQ  152 (159)
Q Consensus        83 ~v~eg~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~~-~~~~~~~~~~k~le~~l~  152 (159)
                      +...++   . .   .+.+++|.|.+ ++|.++.+-.|.....  . ...+. ...+.-..++..|++||.
T Consensus        79 t~~~~~---~-~---~~v~~~~~~~~-~gT~ltl~~~~~~~~~--~-~~~~~~~~~~Gw~~~l~~L~~~l~  138 (139)
T cd08894          79 DHGSGP---P-R---FRLTVTFEEQG-GKTRLTWRQVFPTAAE--R-CEKIKFGAVEGNEQTLDRLAAYLA  138 (139)
T ss_pred             EeccCC---C-c---EEEEEEEEECC-CCEEEEEEEEcCCHHH--H-HHHHHhCHHHHHHHHHHHHHHHHh
Confidence            764331   1 1   23566778865 6899988865422110  0 01111 122344677788887764

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd08895 SRPBCC_CalC_Aha1-like_2 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=98.55  E-value=1.2e-05  Score=58.65  Aligned_cols=135  Identities=16%  Similarity=0.189  Sum_probs=76.8

Q ss_pred             EEEEEEEEcCCHHHHHhhh-cCCCCcccccC-CceeEEEEEcCCCCCCcEEEEE--Eec------CCceeEEEEEEEEEe
Q 031431            5 TYESEETYAVPPARMFNAL-ASDNLPSKIFP-DVVKNVEVLEGNGGPGSIKKFT--IVE------GGQVKYAKHKIEEED   74 (159)
Q Consensus         5 ~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P-~~v~s~~~~eG~g~~GsvR~~~--~~~------g~~~~~~kErl~~~D   74 (159)
                      +++.++.|+||+++||+++ |... +.+|.+ ..+. +.....+-.+|..-.+.  +..      .+......=++.+++
T Consensus         1 ~~~~~r~i~ap~e~Vw~a~td~~~-~~~W~~p~~~~-~~~~~~d~~~GG~~~~~~~~~~~~~g~~~g~~~~~~g~v~~v~   78 (146)
T cd08895           1 TDRLHRVIAAPPERVYRAFLDPDA-LAKWLPPDGMT-GTVHEFDAREGGGFRMSLTYFDPSVGKTTGNTDVFGGRFLELV   78 (146)
T ss_pred             CEEEEEEECCCHHHHHHHHcCHHH-HhhcCCCCCeE-eEEEEEecccCCeEEEEEEcCCccccccCCcEeeeEEEEEEEc
Confidence            4678899999999999999 8887 677765 3222 22222332233332232  222      111123344678888


Q ss_pred             cccceEEEEEEeccccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHHHhHHHHHHHHHHHHHHHHh
Q 031431           75 KVNLKLKYSVIEGNDLADYKLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQ  152 (159)
Q Consensus        75 ~~~~~~~y~v~eg~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~~~~~~~~~~~~k~le~~l~  152 (159)
                      +.++ +.|+..-.+.  .... ..+++++|++.+ ++|.++++...-+..   ....   ...+.-..++..|++||.
T Consensus        79 p~~~-i~~~~~~~~~--~~~~-~~~v~~~~~~~~-~~T~lt~~~~~~~~~---~~~~---~~~~GW~~~l~~L~~~le  145 (146)
T cd08895          79 PNER-IVYTDVFDDP--SLSG-EMTMTWTLSPVS-GGTDVTIVQSGIPDG---IPPE---DCELGWQESLANLAALVE  145 (146)
T ss_pred             CCCE-EEEEEEecCC--CCCc-eEEEEEEEEecC-CCEEEEEEEeCCCch---hhhh---HHHHHHHHHHHHHHHHhc
Confidence            8876 5676432221  1111 234667778874 579999887642221   1112   233466778888888874

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd08897 SRPBCC_CalC_Aha1-like_4 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=98.53  E-value=3.6e-06  Score=60.48  Aligned_cols=127  Identities=14%  Similarity=0.207  Sum_probs=73.2

Q ss_pred             EEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeE--EEEEcCCCCCCcEEEEEEe-cCCc-eeEEEEEEEEEecccce
Q 031431            5 TYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKN--VEVLEGNGGPGSIKKFTIV-EGGQ-VKYAKHKIEEEDKVNLK   79 (159)
Q Consensus         5 ~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s--~~~~eG~g~~GsvR~~~~~-~g~~-~~~~kErl~~~D~~~~~   79 (159)
                      |++.++.++||+++||+++ |... +.+|++. ...  +...+.|-.+|..-.+.+. .++. ...+.=++.++++.++ 
T Consensus         1 ~~~~~~~~~ap~e~Vw~a~td~e~-~~~W~~~-~~~~~~~~~~~d~~~GG~~~~~~~~~~g~~~~~~~g~~~ei~p~~~-   77 (133)
T cd08897           1 KITVETTVDAPIEKVWEAWTTPEH-ITKWNFA-SDDWHCPSAENDLRVGGKFSYRMEAKDGSMGFDFEGTYTEVEPHKL-   77 (133)
T ss_pred             CEEEEEEeCCCHHHHHHHhCCHHH-HhhCCCC-CCCcccceeeecCCcCCEEEEEEEcCCCCcccccceEEEEECCCCE-
Confidence            5788999999999999999 8776 7888542 111  1111233234444333332 2221 1123345667777766 


Q ss_pred             EEEEEEeccccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHHHhHHHHHHHHHHHHHHHHh
Q 031431           80 LKYSVIEGNDLADYKLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQ  152 (159)
Q Consensus        80 ~~y~v~eg~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~~~~~~~~~~~~k~le~~l~  152 (159)
                      +.|+..++          .+.+++|+|.+ ++|.++-+  +.+...  ...+.+   .++-..++..|++||.
T Consensus        78 l~~~~~~~----------~~v~~~l~~~~-~gT~l~l~--~~~~~~--~~~~~~---~~GW~~~l~~L~~~le  132 (133)
T cd08897          78 IEYTMEDG----------REVEVEFTEEG-DGTKVVET--FDAENE--NPVEMQ---RQGWQAILDNFKKYVE  132 (133)
T ss_pred             EEEEcCCC----------CEEEEEEEECC-CCEEEEEE--ECCCCC--CcHHHH---HHHHHHHHHHHHHHhh
Confidence            67875321          13466778864 57888865  443321  112222   2455778888888874

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family

Probab=98.47  E-value=4.8e-05  Score=57.91  Aligned_cols=144  Identities=10%  Similarity=0.113  Sum_probs=84.6

Q ss_pred             EEEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEecCCc---eeEEEEEEEEEecccce
Q 031431            4 VTYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQ---VKYAKHKIEEEDKVNLK   79 (159)
Q Consensus         4 ~~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~---~~~~kErl~~~D~~~~~   79 (159)
                      ..+..+.+|++||+++|+++ |... .|+|.|. +.++++++-.+.--.+-.+.+....+   -.++-.+-...+..+..
T Consensus        41 ~~~k~~~~i~~s~e~v~~vi~d~e~-~~~w~~~-~~~~~vie~~~~~~~i~~~~~~~p~pvs~Rdfv~~~~~~~~~~~~~  118 (195)
T cd08876          41 KEFKAVAEVDASIEAFLALLRDTES-YPQWMPN-CKESRVLKRTDDNERSVYTVIDLPWPVKDRDMVLRSTTEQDADDGS  118 (195)
T ss_pred             EEEEEEEEEeCCHHHHHHHHhhhHh-HHHHHhh-cceEEEeecCCCCcEEEEEEEecccccCCceEEEEEEEEEcCCCCE
Confidence            56788899999999999999 9887 7999996 88999887664312233333332211   12222221222222333


Q ss_pred             EEEEEEeccc----cCCC-ceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHHH-hHHHHHHHHHHHHHHHH
Q 031431           80 LKYSVIEGND----LADY-KLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAK-AGKERVLGVVKGVEAYL  151 (159)
Q Consensus        80 ~~y~v~eg~~----l~~Y-~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~~-~~~~~~~~~~k~le~~l  151 (159)
                      +...+..++.    -..| +.......+.++|.++++|.+++...+++.+.  .|.-.++ ..+.....++++|.+.+
T Consensus       119 ~~i~~~s~~~~~P~~~~~vR~~~~~~~~~i~~~~~~~t~vt~~~~~dp~g~--iP~~lv~~~~~~~~~~~l~~l~~~~  194 (195)
T cd08876         119 VTITLEAAPEALPEQKGYVRIKTVEGQWTFTPLGNGKTRVTYQAYADPGGS--IPGWLANAFAKDAPYNTLENLRKQL  194 (195)
T ss_pred             EEEEeecCCccCCCCCCeEEceeceeeEEEEECCCCeEEEEEEEEeCCCCC--CCHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3333333321    1111 11222234556888777899999999998763  4445555 44455567777777643

Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a

>cd08891 SRPBCC_CalC Ligand-binding SRPBCC domain of Micromonospora echinospora CalC and related proteins

Probab=98.43  E-value=2e-05  Score=57.65  Aligned_cols=137  Identities=12%  Similarity=0.038  Sum_probs=71.5

Q ss_pred             EEEEEEEcCCHHHHHhhh-cCCCCccccc-CCce------eEEEEEcCCCCCCcEEEEEEecCCceeEEEEEEEEEeccc
Q 031431            6 YESEETYAVPPARMFNAL-ASDNLPSKIF-PDVV------KNVEVLEGNGGPGSIKKFTIVEGGQVKYAKHKIEEEDKVN   77 (159)
Q Consensus         6 ~~~e~~i~apa~~vW~~~-d~~~~lp~~~-P~~v------~s~~~~eG~g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~   77 (159)
                      ++.++.|+||+++||+++ |  . +.+|. |...      ..|++.-..|  |..+ +... ++. ....=++.++++.+
T Consensus         2 ~~~~~~i~Ap~e~Vw~a~t~--~-l~~W~~p~~~~~~~~~~~~~~d~~~G--G~~~-~~~~-~g~-~~~~g~v~~v~p~~   73 (149)
T cd08891           2 VRKSVTVPAPPERAFEVFTE--G-FGAWWPPEYHFVFSPGAEVVFEPRAG--GRWY-EIGE-DGT-ECEWGTVLAWEPPS   73 (149)
T ss_pred             eEEEEEecCCHHHHHHHHHh--c-hhhccCCCcccccCCCccEEEcccCC--cEEE-EecC-CCc-EeceEEEEEEcCCC
Confidence            678999999999999999 8  2 55554 4311      2233211112  3333 2222 222 22344677788877


Q ss_pred             ceEEEEEE-eccccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHH-HhHHHHHHHHHHHHHHHHh
Q 031431           78 LKLKYSVI-EGNDLADYKLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQA-KAGKERVLGVVKGVEAYLQ  152 (159)
Q Consensus        78 ~~~~y~v~-eg~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~-~~~~~~~~~~~k~le~~l~  152 (159)
                      + +.|+-. ..+.... .....+.+++|++.++++|.++.+-..-......-.+... ....++-..++..|+++|-
T Consensus        74 ~-l~~tw~~~~~~~~~-~~~~t~vt~~l~~~~~~gT~ltl~~~~~~~~~~~~~~~~~~~~~~~GW~~~L~~L~~~l~  148 (149)
T cd08891          74 R-LVFTWQINADWRPD-PDKASEVEVRFEAVGAEGTRVELEHRGFERHGDGWEAAAMRMGYDGGWPLLLERYAAAAE  148 (149)
T ss_pred             E-EEEEeccCCCcCcC-CCCceEEEEEEEECCCCCeEEEEEEecccccCcchhhHHHHhcccCcHHHHHHHHHHHhc
Confidence            7 566643 2111100 1112356777898764689988877764332100011111 1112244567788877763

This subfamily includes Micromonospora echinospora CalC (MeCalC) and related proteins. These proteins belong to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM). Enediyne antibiotics are antitumor agents. Enediynes have an in vitro and in vivo role as DNA damaging agents; they consist of a DNA recognition unit (e.g., aryltetrasaccharide of CLM), an activating component (e.g., methyl trisulfide of CLM), which promotes cycloaromatization, and the enediyne warhead which cycloaromatizes to a reactive diradical species, resulting in oxidative strand cleavage of the targeted DNA sequence. MeCalC confers resistance to CLM by a self sacrificing mechanism: the transient enediyne diradical speci

>COG3832 Uncharacterized conserved protein [Function unknown]

Probab=98.13  E-value=0.00013  Score=53.86  Aligned_cols=138  Identities=19%  Similarity=0.174  Sum_probs=71.2

Q ss_pred             EEEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEecCCceeEEEEEEEEEecccceEEE
Q 031431            4 VTYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQVKYAKHKIEEEDKVNLKLKY   82 (159)
Q Consensus         4 ~~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~y   82 (159)
                      .+++.+..|++|+++||+++ |... +.+|+..--.+.++.-|.   +....+....| +.....-++.++++..| |.|
T Consensus         8 ~~~~~er~i~aP~e~Vf~A~Tdpe~-l~~W~~~~~~~~d~r~gg---~~~~~~~~~~g-~~~~~~~~~~~v~p~~r-Iv~   81 (149)
T COG3832           8 RTLEIERLIDAPPEKVFEALTDPEL-LARWFMPGGAEFDARTGG---GERVRFRGPDG-PVHSFEGEYLEVVPPER-IVF   81 (149)
T ss_pred             ceEEEEEeecCCHHHHHHHhcCHHH-HHhhcCCCCCccceecCC---ceEEeeecCCC-CeeecceEEEEEcCCcE-EEE
Confidence            67899999999999999999 8775 788776211111111221   22223333333 22345556777877777 455


Q ss_pred             EEEeccccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHHHh--HHHHHHHHHHHHHHHHh
Q 031431           83 SVIEGNDLADYKLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAKA--GKERVLGVVKGVEAYLQ  152 (159)
Q Consensus        83 ~v~eg~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~~~--~~~~~~~~~k~le~~l~  152 (159)
                      +-.-.+.-..  +.....+++|++..+|+   +++..........+.....+.  ..+.-..++..++++|.
T Consensus        82 tw~~~~~~~~--~~~~~v~~~l~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~Gw~~~~~~l~~~l~  148 (149)
T COG3832          82 TWDFDEDGEP--FLKSLVTITLTPEDDGG---TTTLVRTSGGGFLEDEDQKLGMGMEEGWGQLLDNLKALLE  148 (149)
T ss_pred             EeccCCCCCc--ccCceEEEEEEEecCCC---cEEEEEEeeccccchhHHHhCcchhhhHHHHHHHHHHhhc
Confidence            5443322111  01123455667765553   222222222221111111111  14566778888887764

>PF08327 AHSA1: Activator of Hsp90 ATPase homolog 1-like protein; InterPro: IPR013538 This family includes eukaryotic, prokaryotic and archaeal proteins that bear similarity to a C-terminal region of human activator of 90 kDa heat shock protein ATPase homologue 1 (AHSA1/p38, O95433 from SWISSPROT)

Probab=98.10  E-value=0.0001  Score=51.39  Aligned_cols=121  Identities=14%  Similarity=0.227  Sum_probs=67.8

Q ss_pred             cCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEecCCceeEEEEEEEEEecccceEEEEEEeccccC
Q 031431           13 AVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQVKYAKHKIEEEDKVNLKLKYSVIEGNDLA   91 (159)
Q Consensus        13 ~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~y~v~eg~~l~   91 (159)
                      +||+++||+++ +... +.+|.+......+.     .+|..-.+ ...++..-...=++.++++.++ +.|+.--++.-.
T Consensus         1 ~ap~e~Vw~a~t~~~~-~~~W~~~~~~~~~~-----~~Gg~~~~-~~~~g~~~~~~~~v~~~~p~~~-i~~~~~~~~~~~   72 (124)
T PF08327_consen    1 DAPPERVWEALTDPEG-LAQWFTTSEAEMDF-----RPGGSFRF-MDPDGGEFGFDGTVLEVEPPER-IVFTWRMPDDPD   72 (124)
T ss_dssp             SSSHHHHHHHHHSHHH-HHHHSEEEEEEEEC-----STTEEEEE-EETTSEEEEEEEEEEEEETTTE-EEEEEEEETSSS
T ss_pred             CcCHHHHHHHHCCHhH-HhhccCCCcceeee-----ecCCEEEE-EecCCCCceeeEEEEEEeCCEE-EEEEEEccCCCC
Confidence            69999999999 8775 78893211222222     33433333 2244432233335788888877 677744333211


Q ss_pred             CCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHHHh-HHHHHHHHHHHHHHHH
Q 031431           92 DYKLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAKA-GKERVLGVVKGVEAYL  151 (159)
Q Consensus        92 ~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~~~-~~~~~~~~~k~le~~l  151 (159)
                         ......++.|.+ .+++|.++.+.+=.+      +...... ...+-..++..|.+||
T Consensus        73 ---~~~~~v~~~~~~-~~~~T~l~~~~~~~~------~~~~~~~~~~~gw~~~l~~L~~~l  123 (124)
T PF08327_consen   73 ---GPESRVTFEFEE-EGGGTRLTLTHSGFP------DDDEEEEGMEQGWEQMLDRLKAYL  123 (124)
T ss_dssp             ---CEEEEEEEEEEE-ETTEEEEEEEEEEEH------SHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred             ---CCceEEEEEEEE-cCCcEEEEEEEEcCC------ccHHHHHHHHHHHHHHHHHHHHHh
Confidence               223456777788 456788877762221      1222222 3445577778888776

This protein is known to interact with the middle domain of Hsp90, and stimulate its ATPase activity []. It is probably a general up regulator of Hsp90 function, particularly contributing to its efficiency in conditions of increased stress []. p38 is also known to interact with the cytoplasmic domain of the VSV G protein, and may thus be involved in protein transport []. It has also been reported as being under expressed in Down's syndrome. This region is found repeated in two members of this family (Q8XY04 from SWISSPROT and Q6MH87 from SWISSPROT). ; GO: 0006950 response to stress; PDB: 2KEW_A 2KTE_A 2IL5_A 1ZXF_A 2L65_A 2GKD_A 1XN6_A 3OTL_B 2LCG_A 3Q63_D ....

>cd08892 SRPBCC_Aha1 Putative hydrophobic ligand-binding SRPBCC domain of the Hsp90 co-chaperone Aha1 and related proteins

Probab=98.02  E-value=0.00013  Score=51.95  Aligned_cols=122  Identities=14%  Similarity=0.130  Sum_probs=68.3

Q ss_pred             EEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEecCCceeEEEEEEEEEecccceEEEE
Q 031431            5 TYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQVKYAKHKIEEEDKVNLKLKYS   83 (159)
Q Consensus         5 ~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~y~   83 (159)
                      +++.++.|+||+++||+++ |... +.+|+.. ..+.+...|    |..+   +..|.    +.=++.++++.++ +.|+
T Consensus         1 ~i~~~r~i~ap~e~Vw~A~T~~e~-l~~W~~~-~~~~d~~~G----G~~~---~~~g~----~~g~~~~i~p~~~-l~~~   66 (126)
T cd08892           1 TISLTETFQVPAEELYEALTDEER-VQAFTRS-PAKVDAKVG----GKFS---LFGGN----ITGEFVELVPGKK-IVQK   66 (126)
T ss_pred             CeEEEEEECCCHHHHHHHHCCHHH-HHhhcCC-CceecCCCC----CEEE---EeCCc----eEEEEEEEcCCCE-EEEE
Confidence            3678899999999999999 8775 6777753 334443333    3333   22331    2335677877666 4555


Q ss_pred             EEeccccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHHHhHHHHHH-HHHHHHHHHH
Q 031431           84 VIEGNDLADYKLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAKAGKERVL-GVVKGVEAYL  151 (159)
Q Consensus        84 v~eg~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~~~~~~~~~-~~~k~le~~l  151 (159)
                      -.-.+. +. . ...+.+++|++. +++|.++.+-...+..    ..+.+.   +.-. .++..|.++|
T Consensus        67 w~~~~~-~~-~-~~s~v~~~l~~~-~~gT~ltl~~~g~~~~----~~~~~~---~GW~~~~~~~l~~~~  124 (126)
T cd08892          67 WRFKSW-PE-G-HYSTVTLTFTEK-DDETELKLTQTGVPAG----EEERTR---EGWERYYFESIKQTF  124 (126)
T ss_pred             EEcCCC-CC-C-CcEEEEEEEEEC-CCCEEEEEEEECCCCc----hHHHHH---hhHHHHHHHHHHHHh
Confidence            431111 11 1 123467777886 4578877765544321    112222   2333 3667776665

This subfamily includes the C-terminal SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Aha1, and related domains. Proteins in this group belong to the SRPBCC domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Aha1 is one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Hsp90, Aha1, and other accessory proteins interact in a chaperone cycle driven by ATP binding and hydrolysis. Aha1 promotes dimerization of the N-terminal domains of Hsp90, and stimulates its low intrinsic ATPase activity. One Aha1 molecule binds per Hsp90 dimer. The N- and C- terminal domains of Aha1 cooperatively bind across the dimer interface of Hsp90. The C-terminal domain of Aha1 binds the N-terminal Hsp90 ATPase domain. Aha1 may regulate the dwell time of Hsp90 with client proteins. Aha1 m

>cd08901 SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=97.93  E-value=0.00022  Score=51.39  Aligned_cols=127  Identities=15%  Similarity=0.160  Sum_probs=72.1

Q ss_pred             EEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEecCCceeEEEEEEEEEecccceEEEEE
Q 031431            6 YESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQVKYAKHKIEEEDKVNLKLKYSV   84 (159)
Q Consensus         6 ~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~y~v   84 (159)
                      ++.++.|+||+++||+++ |... +.+|.+. -.+.++..|    |.+ .+.+...++  .+.=++.++++.++ +.|+.
T Consensus         2 ~~~~~~i~ap~e~Vw~a~t~p~~-l~~W~~~-~~~~~~~~G----g~~-~~~~~~~~~--~~~g~~~~~~p~~~-l~~~w   71 (136)
T cd08901           2 AKTAMLIRRPVAEVFEAFVDPEI-TTKFWFT-GSSGRLEEG----KTV-TWDWEMYGA--SVPVNVLEIEPNKR-IVIEW   71 (136)
T ss_pred             eeEEEEecCCHHHHHHHhcCHHH-hcccccc-CCCccccCC----CEE-EEEEEccCC--ceEEEEEEEcCCCE-EEEEe
Confidence            568899999999999999 8776 6775443 223333223    333 345543222  12236677776655 67775


Q ss_pred             EeccccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHHH---hHHHHHHHHHHHHHHHHhh
Q 031431           85 IEGNDLADYKLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAK---AGKERVLGVVKGVEAYLQA  153 (159)
Q Consensus        85 ~eg~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~~---~~~~~~~~~~k~le~~l~~  153 (159)
                      ..++   . .   ..++++|.+.++|+|.++.+-..-+..    .++..+   ....+-..++..|++||..
T Consensus        72 ~~~~---~-~---s~v~~~l~~~~~ggT~ltl~~~~~~~~----~~~~~~~~~~~~~GW~~~L~~L~~~le~  132 (136)
T cd08901          72 GDPG---E-P---TTVEWTFEELDDGRTFVTITESGFPGT----DDEGLKQALGSTEGWTLVLAGLKAYLEH  132 (136)
T ss_pred             cCCC---C-C---EEEEEEEEECCCCcEEEEEEECCCCCC----cHHHHHHHhcCCCCHHHHHHHHHHHHhc
Confidence            4321   1 1   235677788754678887774432211    111111   1123446778888888765

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>COG2867 Oligoketide cyclase/lipid transport protein [Lipid metabolism]

Probab=97.92  E-value=0.00032  Score=51.63  Aligned_cols=111  Identities=14%  Similarity=0.142  Sum_probs=77.7

Q ss_pred             EEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEecCCceeEEEEEEEEEecccceEEEE
Q 031431            5 TYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQVKYAKHKIEEEDKVNLKLKYS   83 (159)
Q Consensus         5 ~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~y~   83 (159)
                      +++.+.-++.||+++++++ |-.. -|+.+|. ..+..+.+.++. .-+-.++.+=.+--.+..-|.. +++..++|--+
T Consensus         3 ~~~~s~lv~y~a~~mF~LV~dV~~-YP~FlP~-C~~s~v~~~~~~-~l~A~l~V~~k~i~e~F~Trv~-~~~~~~~I~~~   78 (146)
T COG2867           3 QIERTALVPYSASQMFDLVNDVES-YPEFLPW-CSASRVLERNER-ELIAELDVGFKGIRETFTTRVT-LKPTARSIDMK   78 (146)
T ss_pred             eeEeeeeccCCHHHHHHHHHHHHh-Cchhccc-cccceEeccCcc-eeEEEEEEEhhheeeeeeeeee-ecCchhhhhhh
Confidence            5788999999999999999 9887 8999996 666677777632 2444444432221234444544 56666678888


Q ss_pred             EEeccccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCC
Q 031431           84 VIEGNDLADYKLEKISFEHQWRASPNGGSICKTICKLHAKGE  125 (159)
Q Consensus        84 v~eg~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~  125 (159)
                      +++|+.    +.-  ...++++|-++++|.|+...+|+...-
T Consensus        79 l~~GPF----k~L--~~~W~F~pl~~~~ckV~f~ldfeF~s~  114 (146)
T COG2867          79 LIDGPF----KYL--KGGWQFTPLSEDACKVEFFLDFEFKSR  114 (146)
T ss_pred             hhcCCh----hhh--cCceEEEECCCCceEEEEEEEeeehhH
Confidence            888987    111  125567997677999999999999753

>PTZ00220 Activator of HSP-90 ATPase; Provisional

Probab=97.51  E-value=0.0011  Score=47.80  Aligned_cols=120  Identities=16%  Similarity=0.238  Sum_probs=63.3

Q ss_pred             EcCCHHHHHhhh-cCCCCcccc-cCCceeEEEEEcCCCCCCcEEEEEEecCCceeEEEEEEEEEecccce-EEEEEEecc
Q 031431           12 YAVPPARMFNAL-ASDNLPSKI-FPDVVKNVEVLEGNGGPGSIKKFTIVEGGQVKYAKHKIEEEDKVNLK-LKYSVIEGN   88 (159)
Q Consensus        12 i~apa~~vW~~~-d~~~~lp~~-~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~-~~y~v~eg~   88 (159)
                      ++||+++||+++ |... +.+| .+. ...++...|    |..+.+   .+.    +.=++.++|+.+|. ++++..+.+
T Consensus         1 f~ap~e~Vw~A~Tdp~~-l~~w~~~~-~~~~d~~~G----G~f~~~---~~~----~~G~~~ev~pp~rlv~tw~~~~~~   67 (132)
T PTZ00220          1 FYVPPEVLYNAFLDAYT-LTRLSLGS-PAEMDAKVG----GKFSLF---NGS----VEGEFTELEKPKKIVQKWRFRDWE   67 (132)
T ss_pred             CCCCHHHHHHHHcCHHH-HHHHhcCC-CccccCCcC----CEEEEe---cCc----eEEEEEEEcCCCEEEEEEecCCCC
Confidence            479999999999 8775 6777 432 222332222    333332   221    22366778888772 344442211


Q ss_pred             ccCCCceeEEEEEEEEEECCCCCeEEEEEEE-EEEcCC--CCCCHHHHHhHHHHHHH-HHHHHHHHHh
Q 031431           89 DLADYKLEKISFEHQWRASPNGGSICKTICK-LHAKGE--VEVTEEQAKAGKERVLG-VVKGVEAYLQ  152 (159)
Q Consensus        89 ~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~-~e~~~~--~~~~~~~~~~~~~~~~~-~~k~le~~l~  152 (159)
                      . ..+    .+.+++|.+.++|+|.++.+-. +.....  .....+.+.   ++-.. ++..|++||.
T Consensus        68 ~-~~~----s~vt~~~~~~~~g~T~lt~~~~g~~~~~~~~~~~~~~~~~---~GW~~~~ld~L~~~l~  127 (132)
T PTZ00220         68 E-DVY----SKVTIEFRAVEEDHTELKLTQTGIPSLDKFGNGGCLERCR---NGWTQNFLDRFEKILG  127 (132)
T ss_pred             C-CCc----eEEEEEEEeCCCCcEEEEEEEecCccccccCCCchhhHHH---hChHHHHHHHHHHHhC
Confidence            1 111    2456677887666888888876 422211  101122222   24344 5888887763

>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding

Probab=97.37  E-value=0.023  Score=44.27  Aligned_cols=124  Identities=7%  Similarity=-0.017  Sum_probs=72.8

Q ss_pred             EEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEe-c--C--CceeEEEEEEEEEecccc
Q 031431            5 TYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIV-E--G--GQVKYAKHKIEEEDKVNL   78 (159)
Q Consensus         5 ~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~-~--g--~~~~~~kErl~~~D~~~~   78 (159)
                      .+..+.++++|++++|+++ |..+ .++|.+ .++++++++--+.--.|-.+.+. +  .  .+-.++.-+....+....
T Consensus        46 ~~~ge~~v~as~~~v~~ll~D~~~-r~~Wd~-~~~~~~vl~~~~~d~~i~y~~~~~Pwp~~~~~RDfV~l~~~~~~~~~~  123 (205)
T cd08874          46 GFLGAGVIKAPLATVWKAVKDPRT-RFLYDT-MIKTARIHKTFTEDICLVYLVHETPLCLLKQPRDFCCLQVEAKEGELS  123 (205)
T ss_pred             eEEEEEEEcCCHHHHHHHHhCcch-hhhhHH-hhhheeeeeecCCCeEEEEEEecCCCCCCCCCCeEEEEEEEEECCCcE
Confidence            3567889999999999999 9997 799999 59999998754321233333332 1  2  111233333222223332


Q ss_pred             eEEEEEEeccc---cC-C-CceeEEEEEEEEEEC---CCCCeEEEEEEEEEEcCCCCCCH
Q 031431           79 KLKYSVIEGND---LA-D-YKLEKISFEHQWRAS---PNGGSICKTICKLHAKGEVEVTE  130 (159)
Q Consensus        79 ~~~y~v~eg~~---l~-~-Y~~~~~~~~~~~~p~---~~g~t~v~W~~~~e~~~~~~~~~  130 (159)
                      .+.-+-+.-+.   .+ + .+.......+.++|.   ++|.|.++..+..+|.++..|+-
T Consensus       124 vi~~~SV~~~~~P~~~~~~VR~~~~~~gw~i~P~~~~g~~~t~vty~~q~DPggg~iP~~  183 (205)
T cd08874         124 VVACQSVYDKSMPEPGRSLVRGEILPSAWILEPVTVEGNQYTRVIYIAQVALCGPDVPAQ  183 (205)
T ss_pred             EEEEEecccccCCCCCCCeEEeeeEeeeEEEEECccCCCCcEEEEEEEEECCCCCCCCHH
Confidence            22222111111   11 1 234444556667887   66789999999999986544433

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.

>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins

Probab=97.12  E-value=0.048  Score=42.35  Aligned_cols=144  Identities=10%  Similarity=0.096  Sum_probs=79.6

Q ss_pred             EEEEEEEEcCCHHHHH-hhh-cCCCCcccccCCceeEEEEEcCCCC-CCcEEEEEEec-CCc---eeEEEEEEEEEeccc
Q 031431            5 TYESEETYAVPPARMF-NAL-ASDNLPSKIFPDVVKNVEVLEGNGG-PGSIKKFTIVE-GGQ---VKYAKHKIEEEDKVN   77 (159)
Q Consensus         5 ~~~~e~~i~apa~~vW-~~~-d~~~~lp~~~P~~v~s~~~~eG~g~-~GsvR~~~~~~-g~~---~~~~kErl~~~D~~~   77 (159)
                      -+..+.++++|+++++ .++ |..+ .++|.+. +.++++++--+. .=-++.++... ++.   -.++.-|...-++.+
T Consensus        50 ~~k~e~~i~~~~~~l~~~l~~d~e~-~~~W~~~-~~~~~vl~~id~~~~i~y~~~~p~p~~~vs~RD~V~~~~~~~~~~~  127 (209)
T cd08905          50 VFRLEVVVDQPLDNLYSELVDRMEQ-MGEWNPN-VKEVKILQRIGKDTLITHEVAAETAGNVVGPRDFVSVRCAKRRGST  127 (209)
T ss_pred             EEEEEEEecCCHHHHHHHHHhchhh-hceeccc-chHHHHHhhcCCCceEEEEEeccCCCCccCccceEEEEEEEEcCCc
Confidence            3667889999999999 666 7776 7999996 778777655321 11123322221 111   122222322233333


Q ss_pred             ceEEEEEEecccc---CCC-ceeEEEEEEEEEECCC--CCeEEEEEEEEEEcCCCCCCHHHHH-hHHHHHHHHHHHHHHH
Q 031431           78 LKLKYSVIEGNDL---ADY-KLEKISFEHQWRASPN--GGSICKTICKLHAKGEVEVTEEQAK-AGKERVLGVVKGVEAY  150 (159)
Q Consensus        78 ~~~~y~v~eg~~l---~~Y-~~~~~~~~~~~~p~~~--g~t~v~W~~~~e~~~~~~~~~~~~~-~~~~~~~~~~k~le~~  150 (159)
                      ..+.....+-+.+   ++| +.......+.++|.++  ++|.++|.+-.+|.+.  .|.-.+. .+.+.....++.|.++
T Consensus       128 ~~~~~~s~~~~~~P~~~~~VR~~~~~~~w~l~p~~~~~~~t~v~~~~~~DpkG~--iP~~lvN~~~~~~~~~~~~~Lr~~  205 (209)
T cd08905         128 CVLAGMATHFGLMPEQKGFIRAENGPTCIVLRPLAGDPSKTKLTWLLSIDLKGW--LPKSIINQVLSQTQVDFANHLRQR  205 (209)
T ss_pred             EEEEEEeecCCCCCCCCCeEEEEeeccEEEEEECCCCCCceEEEEEEeecCCCC--CCHHHHHHHhHHhHHHHHHHHHHH
Confidence            2221111222211   111 2223334555788765  7899999999999886  3444444 4355556777777776


Q ss_pred             Hh
Q 031431          151 LQ  152 (159)
Q Consensus       151 l~  152 (159)
                      +.
T Consensus       206 ~~  207 (209)
T cd08905         206 MA  207 (209)
T ss_pred             Hh
Confidence            65

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in

>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins

Probab=97.08  E-value=0.1  Score=41.52  Aligned_cols=147  Identities=11%  Similarity=0.051  Sum_probs=82.3

Q ss_pred             EEEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCC-CCCcEEEEEEec---CCceeEEEEEEEE--Eecc
Q 031431            4 VTYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNG-GPGSIKKFTIVE---GGQVKYAKHKIEE--EDKV   76 (159)
Q Consensus         4 ~~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g-~~GsvR~~~~~~---g~~~~~~kErl~~--~D~~   76 (159)
                      ..+..+..+++|++++|+++ |... .++|.+. +.++++++--+ ..+-++ +.+..   -.+-..+-.+-..  .+..
T Consensus        77 l~fk~e~~vd~s~~~v~dlL~D~~~-R~~WD~~-~~e~evI~~id~d~~iyy-~~~p~PwPvk~RDfV~~~s~~~~~~~~  153 (235)
T cd08873          77 LSFCVELKVQTCASDAFDLLSDPFK-RPEWDPH-GRSCEEVKRVGEDDGIYH-TTMPSLTSEKPNDFVLLVSRRKPATDG  153 (235)
T ss_pred             eEEEEEEEecCCHHHHHHHHhCcch-hhhhhhc-ccEEEEEEEeCCCcEEEE-EEcCCCCCCCCceEEEEEEEEeccCCC
Confidence            35788889999999999999 9997 8999995 88999887432 223233 33332   1111233322222  2222


Q ss_pred             c-ceEEEEEEe--cc-ccCCC-ceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHHHhHHHHHHHHHHHHHHHH
Q 031431           77 N-LKLKYSVIE--GN-DLADY-KLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAKAGKERVLGVVKGVEAYL  151 (159)
Q Consensus        77 ~-~~~~y~v~e--g~-~l~~Y-~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~~~~~~~~~~~~k~le~~l  151 (159)
                      . ..+...-+.  .- +-++| +.......+.+.|.++++|.|+.....+|.--. .-...+...-......++..++||
T Consensus       154 ~~~~I~~~SV~h~~~Pp~kgyVR~~~~~ggW~I~p~~~~~t~VtY~~~~dPg~~~-~~~~~~~~~~~~~~~~~~~~~~~~  232 (235)
T cd08873         154 DPYKVAFRSVTLPRVPQTPGYSRTEVACAGFVIRQDCGTCTEVSYYNETNPKLLS-YVTCNLAGLSALYCRTFHCCEQFL  232 (235)
T ss_pred             CeEEEEEeeeecccCCCCCCeEEEEEEeeeEEEEECCCCcEEEEEEEEcCCCccc-eeeecchhhhHHHHHHHHHHHHHh
Confidence            2 222222222  11 11222 233444566778988889999999888883210 000111111124456777888888


Q ss_pred             hhC
Q 031431          152 QAN  154 (159)
Q Consensus       152 ~~~  154 (159)
                      ..|
T Consensus       233 ~~~  235 (235)
T cd08873         233 VTN  235 (235)
T ss_pred             ccC
Confidence            764

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an

>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins

Probab=96.96  E-value=0.11  Score=41.59  Aligned_cols=144  Identities=11%  Similarity=0.073  Sum_probs=76.4

Q ss_pred             EEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEecC-Cc---eeEEEEEEEEEecccc-
Q 031431            5 TYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEG-GQ---VKYAKHKIEEEDKVNL-   78 (159)
Q Consensus         5 ~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g-~~---~~~~kErl~~~D~~~~-   78 (159)
                      .+..+..+++|++++++++ |... .++|.++ +.++++++--+.--.+..++..+- ++   -.++-.+-..-+.++. 
T Consensus        82 ~fK~e~~vd~s~e~v~~lL~D~~~-r~~Wd~~-~~e~~vIe~id~~~~vY~v~~~p~~~pvs~RDfV~~~s~~~~~~~g~  159 (240)
T cd08913          82 SFKVEMVVHVDAAQAFLLLSDLRR-RPEWDKH-YRSCELVQQVDEDDAIYHVTSPSLSGHGKPQDFVILASRRKPCDNGD  159 (240)
T ss_pred             EEEEEEEEcCCHHHHHHHHhChhh-hhhhHhh-ccEEEEEEecCCCcEEEEEecCCCCCCCCCCeEEEEEEEEeccCCCc
Confidence            4667889999999999999 9997 8999996 888888865432112555543332 11   1222221111211221 


Q ss_pred             --eEEEEEEe-ccc--cCCC-ceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHHH-hHHHHH-HHHHHHHHHH
Q 031431           79 --KLKYSVIE-GND--LADY-KLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAK-AGKERV-LGVVKGVEAY  150 (159)
Q Consensus        79 --~~~y~v~e-g~~--l~~Y-~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~~-~~~~~~-~~~~k~le~~  150 (159)
                        .+....+. .+.  .++| +.......+.+.|.++++|.+++...-+|  +. .|.-..+ .+.+.. ...+.+-..+
T Consensus       160 ~yii~~~sv~~P~~Pp~kgyVR~~~~~ggw~i~p~~~~~t~vtY~~~~dP--G~-LP~~~~N~~~~~~p~~~~~~~~~~~  236 (240)
T cd08913         160 PYVIALRSVTLPTHPPTPEYTRGETLCSGFCIWEESDQLTKVSYYNQATP--GV-LPYISTDIAGLSSEFYSTFSACSQF  236 (240)
T ss_pred             cEEEEEEEeecCCCCCCCCcEEeeecccEEEEEECCCCcEEEEEEEEeCC--cc-ccHHHhhhhhhccchhHHHHHHHHH
Confidence              12222222 221  1222 23334445666888778899988665555  33 3322222 222222 3455555556


Q ss_pred             Hhh
Q 031431          151 LQA  153 (159)
Q Consensus       151 l~~  153 (159)
                      |..
T Consensus       237 ~~~  239 (240)
T cd08913         237 LLD  239 (240)
T ss_pred             hhc
Confidence            554

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of

>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins

Probab=96.74  E-value=0.18  Score=39.08  Aligned_cols=143  Identities=9%  Similarity=0.057  Sum_probs=77.0

Q ss_pred             EEEEEEEcCCHHHHHhhh-cCCC-CcccccCCceeEEEEEcCCC-CCCcEEEEEEe-c-C---CceeEEEEE-EEEEecc
Q 031431            6 YESEETYAVPPARMFNAL-ASDN-LPSKIFPDVVKNVEVLEGNG-GPGSIKKFTIV-E-G---GQVKYAKHK-IEEEDKV   76 (159)
Q Consensus         6 ~~~e~~i~apa~~vW~~~-d~~~-~lp~~~P~~v~s~~~~eG~g-~~GsvR~~~~~-~-g---~~~~~~kEr-l~~~D~~   76 (159)
                      +..+..++++++++++.+ |..+ .-++|.+. +.++++++--+ ...-++. ... + +   .+-..+--| ....++.
T Consensus        48 ~k~e~~i~~s~~~~~~~l~d~~~~~r~~W~~~-~~~~~vle~id~~~~i~~~-~~p~~~~~~vs~RDfV~~~~~~~~~d~  125 (208)
T cd08903          48 YKGEGIVYATLEQVWDCLKPAAGGLRVKWDQN-VKDFEVVEAISDDVSVCRT-VTPSAAMKIISPRDFVDVVLVKRYEDG  125 (208)
T ss_pred             EEEEEEecCCHHHHHHHHHhccchhhhhhhhc-cccEEEEEEecCCEEEEEE-ecchhcCCCcCCCceEEEEEEEecCCc
Confidence            678889999999999999 8754 22799995 88888876643 2222232 222 1 1   111222222 2223333


Q ss_pred             cceEEEEEEeccc---cCCCcee-E--EEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHHH-hHHHHHHHHHHHHHH
Q 031431           77 NLKLKYSVIEGND---LADYKLE-K--ISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAK-AGKERVLGVVKGVEA  149 (159)
Q Consensus        77 ~~~~~y~v~eg~~---l~~Y~~~-~--~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~~-~~~~~~~~~~k~le~  149 (159)
                      ...+.+..++-+.   .++|-.- .  .-.-++.+|.++++|.++|.+-.+|.+.  .|...+. ...+....+++.|.+
T Consensus       126 ~i~i~~~sv~h~~~P~~~~~VR~~~~~~g~~~~~~~~~~~~t~v~~~~~~DpkG~--iP~~lvn~~~~~~~~~~~~~Lr~  203 (208)
T cd08903         126 TISSNATNVEHPLCPPQAGFVRGFNHPCGCFCEPVPGEPDKTQLVSFFQTDLSGY--LPQTVVDSFFPASMAEFYNNLTK  203 (208)
T ss_pred             eEEEeEEeccCCCCCCCCCeEEEeeeccEEEEEECCCCCCceEEEEEEEeccCCC--cCHHHHHHHhhHHHHHHHHHHHH
Confidence            3333333333321   1222111 1  1123333454556899999999999875  3344443 333555677777776


Q ss_pred             HHh
Q 031431          150 YLQ  152 (159)
Q Consensus       150 ~l~  152 (159)
                      ++.
T Consensus       204 ~~~  206 (208)
T cd08903         204 AVK  206 (208)
T ss_pred             HHh
Confidence            653

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.

>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins

Probab=96.55  E-value=0.26  Score=38.38  Aligned_cols=147  Identities=9%  Similarity=0.042  Sum_probs=77.9

Q ss_pred             EEEEEEEE-cCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEecCC---ceeEEEEEEEEEecccce
Q 031431            5 TYESEETY-AVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGG---QVKYAKHKIEEEDKVNLK   79 (159)
Q Consensus         5 ~~~~e~~i-~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~---~~~~~kErl~~~D~~~~~   79 (159)
                      .+..+.++ ++|++.+++++ |... .++|.|. +..+++++.-+.--.|....+..--   +-.++--|...-++....
T Consensus        48 ~~k~~~~~~~~s~e~~~~~l~D~~~-r~~Wd~~-~~e~~~ie~~d~~~~i~y~~~~~P~pvs~RDfV~~r~~~~~~~~~v  125 (222)
T cd08871          48 MIKVSAIFPDVPAETLYDVLHDPEY-RKTWDSN-MIESFDICQLNPNNDIGYYSAKCPKPLKNRDFVNLRSWLEFGGEYI  125 (222)
T ss_pred             EEEEEEEeCCCCHHHHHHHHHChhh-hhhhhhh-hceeEEEEEcCCCCEEEEEEeECCCCCCCCeEEEEEEEEeCCCEEE
Confidence            35566666 79999999999 8765 7899996 6666666543221233333333111   112222232222232212


Q ss_pred             EEEEEEecccc---CCCc-eeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHHH-hHHHHHHHHHHHHHHHHhhC
Q 031431           80 LKYSVIEGNDL---ADYK-LEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAK-AGKERVLGVVKGVEAYLQAN  154 (159)
Q Consensus        80 ~~y~v~eg~~l---~~Y~-~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~~-~~~~~~~~~~k~le~~l~~~  154 (159)
                      +...-++-+..   ..|- .......+.++|.++++|.++|.+..++.+.  .|.-.+. .++.....+++.|...+.+-
T Consensus       126 i~~~sv~~~~~P~~~g~VR~~~~~~g~~i~p~~~~~t~vt~~~~~Dp~G~--IP~~lvN~~~~~~~~~~l~~l~k~~~~y  203 (222)
T cd08871         126 IFNHSVKHKKYPPRKGFVRAISLLTGYLIRPTGPKGCTLTYVTQNDPKGS--LPKWVVNKATTKLAPKVMKKLHKAALKY  203 (222)
T ss_pred             EEeccccCCCCCCCCCeEEeEEEccEEEEEECCCCCEEEEEEEecCCCCC--cCHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            11111111111   1111 1112233456787777899999988888875  3444434 44455567777777666553


Q ss_pred             C
Q 031431          155 P  155 (159)
Q Consensus       155 ~  155 (159)
                      +
T Consensus       204 ~  204 (222)
T cd08871         204 P  204 (222)
T ss_pred             H
Confidence            3

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe

>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins

Probab=96.55  E-value=0.24  Score=38.12  Aligned_cols=144  Identities=12%  Similarity=0.084  Sum_probs=76.7

Q ss_pred             EEEEEEEcCCHHHHHhh-h-cCCCCcccccCCceeEEEEEcCCC-CCCcEEEEEEecC-Cc---eeEEEEEEEEEecccc
Q 031431            6 YESEETYAVPPARMFNA-L-ASDNLPSKIFPDVVKNVEVLEGNG-GPGSIKKFTIVEG-GQ---VKYAKHKIEEEDKVNL   78 (159)
Q Consensus         6 ~~~e~~i~apa~~vW~~-~-d~~~~lp~~~P~~v~s~~~~eG~g-~~GsvR~~~~~~g-~~---~~~~kErl~~~D~~~~   78 (159)
                      +..+..+++|+++++.. + |... .++|.+. +..+++++.-+ ..--+...+..+. .+   -.++--|-...++...
T Consensus        50 ~k~~~~i~~~~~~v~~~l~~d~~~-~~~Wd~~-~~~~~~i~~~d~~~~i~y~~~~~~~~~~vs~RDfV~~r~~~~~~~~~  127 (208)
T cd08868          50 FRLTGVLDCPAEFLYNELVLNVES-LPSWNPT-VLECKIIQVIDDNTDISYQVAAEAGGGLVSPRDFVSLRHWGIRENCY  127 (208)
T ss_pred             EEEEEEEcCCHHHHHHHHHcCccc-cceecCc-ccceEEEEEecCCcEEEEEEecCcCCCcccccceEEEEEEEecCCeE
Confidence            66788999999999864 5 7776 7999996 77777665542 2111222222221 11   1222222222333222


Q ss_pred             eEEEEEEeccc---cCCC-ceeEEEEEEEEEECCC--CCeEEEEEEEEEEcCCCCCCHHHHH-hHHHHHHHHHHHHHHHH
Q 031431           79 KLKYSVIEGND---LADY-KLEKISFEHQWRASPN--GGSICKTICKLHAKGEVEVTEEQAK-AGKERVLGVVKGVEAYL  151 (159)
Q Consensus        79 ~~~y~v~eg~~---l~~Y-~~~~~~~~~~~~p~~~--g~t~v~W~~~~e~~~~~~~~~~~~~-~~~~~~~~~~k~le~~l  151 (159)
                      .+...-++-+.   .++| +.......+.++|.++  ++|.++|.+..+|.|..+  .-... .+......+++.|..++
T Consensus       128 ~i~~~sv~h~~~P~~~g~VR~~~~~~~~~i~p~~~~~~~t~v~~~~~~Dp~G~iP--~~lvN~~~~~~~~~~~~~Lr~~~  205 (208)
T cd08868         128 LSSGVSVEHPAMPPTKNYVRGENGPGCWILRPLPNNPNKCNFTWLLNTDLKGWLP--QYLVDQALASVLLDFMKHLRKRI  205 (208)
T ss_pred             EEEEEeccCCCCCCCCCeEEEeccccEEEEEECCCCCCceEEEEEEEECCCCCCc--ceeeehhhHHHHHHHHHHHHHHH
Confidence            22222222111   1111 1111223445677654  579999999999987533  22222 34556677888888877


Q ss_pred             hh
Q 031431          152 QA  153 (159)
Q Consensus       152 ~~  153 (159)
                      .+
T Consensus       206 ~~  207 (208)
T cd08868         206 AT  207 (208)
T ss_pred             hh
Confidence            53

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth

>cd08863 SRPBCC_DUF1857 DUF1857, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily

Probab=96.52  E-value=0.2  Score=36.85  Aligned_cols=63  Identities=14%  Similarity=0.280  Sum_probs=45.5

Q ss_pred             CHHHHHhhh--cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEecCCceeEEEEEEEEEecccceEEEEEEe
Q 031431           15 PPARMFNAL--ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQVKYAKHKIEEEDKVNLKLKYSVIE   86 (159)
Q Consensus        15 pa~~vW~~~--d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~y~v~e   86 (159)
                      ..+++|.-+  ...+ -....|+ +.+|++++.++. --.|.++|++.    .++|++. +++..+ +.|.+-.
T Consensus        18 Tr~QlW~GL~~kar~-p~~Fvp~-i~~c~Vl~e~~~-~l~Rel~f~~~----~v~e~vt-~~~~~~-v~f~~~~   82 (141)
T cd08863          18 TRAQLWRGLVLRARE-PQLFVPG-LDRCEVLSESGT-VLERELTFGPA----KIRETVT-LEPPSR-VHFLQAD   82 (141)
T ss_pred             CHHHHHhHHHhhhCC-chhcccc-cceEEEEecCCC-EEEEEEEECCc----eEEEEEE-ecCCcE-EEEEecC
Confidence            356999988  4443 2346775 899999988753 45699999875    7999977 555555 5787765

Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins

>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins

Probab=96.51  E-value=0.27  Score=38.22  Aligned_cols=144  Identities=10%  Similarity=0.042  Sum_probs=77.4

Q ss_pred             EEEEEEEEEcCCHHHHH-hhh-cCCCCcccccCCceeEEEEEcCCCCCCc-EEEEEEec-CCce---eEEEEEEEEEecc
Q 031431            4 VTYESEETYAVPPARMF-NAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGS-IKKFTIVE-GGQV---KYAKHKIEEEDKV   76 (159)
Q Consensus         4 ~~~~~e~~i~apa~~vW-~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~Gs-vR~~~~~~-g~~~---~~~kErl~~~D~~   76 (159)
                      ..+..+.++++|++++| .++ |..+ .++|.+. +.++++++--+.-=. ++.++... +++.   .++--|-..-+..
T Consensus        49 ~~fk~~~~v~~~~~~l~~~ll~D~~~-~~~W~~~-~~~~~vi~~~~~~~~i~Y~v~~p~~~~pv~~RDfV~~r~~~~~~~  126 (209)
T cd08906          49 KTFILKAFMQCPAELVYQEVILQPEK-MVLWNKT-VSACQVLQRVDDNTLVSYDVAAGAAGGVVSPRDFVNVRRIERRRD  126 (209)
T ss_pred             cEEEEEEEEcCCHHHHHHHHHhChhh-ccccCcc-chhhhheeeccCCcEEEEEEccccccCCCCCCceEEEEEEEecCC
Confidence            34678889999999998 577 9887 8999996 888888755431111 12222221 1121   2333333322333


Q ss_pred             cc-eEEEEEEecccc---CCCceeE-EEEEEEEEE--CCCCCeEEEEEEEEEEcCCCCCCHHHHH-hHHHHHHHHHHHHH
Q 031431           77 NL-KLKYSVIEGNDL---ADYKLEK-ISFEHQWRA--SPNGGSICKTICKLHAKGEVEVTEEQAK-AGKERVLGVVKGVE  148 (159)
Q Consensus        77 ~~-~~~y~v~eg~~l---~~Y~~~~-~~~~~~~~p--~~~g~t~v~W~~~~e~~~~~~~~~~~~~-~~~~~~~~~~k~le  148 (159)
                      .. .+..++. -+.+   ++|-.-. ...-+-+.|  .++++|.++|.+..+|.|.  .|.-.+. .+.+....+++.|.
T Consensus       127 ~~i~~~~sv~-~~~~P~~~~~VR~~~~~~G~~i~~~~~~~~~t~vt~~~~~Dp~G~--lP~~lvN~~~~~~~~~~~~~LR  203 (209)
T cd08906         127 RYVSAGISTT-HSHKPPLSKYVRGENGPGGFVVLKSASNPSVCTFIWILNTDLKGR--LPRYLIHQSLAATMFEFASHLR  203 (209)
T ss_pred             cEEEEEEEEe-cCCCCCCCCeEEEeeeccEEEEEECCCCCCceEEEEEEecCCCCC--CCHHHHHHHHHHHHHHHHHHHH
Confidence            32 1222222 2211   2221111 111122344  3456899999999999985  3333333 44555567777777


Q ss_pred             HHHh
Q 031431          149 AYLQ  152 (159)
Q Consensus       149 ~~l~  152 (159)
                      +++.
T Consensus       204 ~~~~  207 (209)
T cd08906         204 QRIR  207 (209)
T ss_pred             HHHh
Confidence            6663

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.

>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins

Probab=96.49  E-value=0.22  Score=36.87  Aligned_cols=143  Identities=13%  Similarity=0.133  Sum_probs=79.0

Q ss_pred             EEEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEecCCce---eEEEEEEEEEecccc-
Q 031431            4 VTYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQV---KYAKHKIEEEDKVNL-   78 (159)
Q Consensus         4 ~~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~---~~~kErl~~~D~~~~-   78 (159)
                      ..+..+.++++|++++|+++ |... .++|-|. +.++++++-.+..-.+....+....+.   ..+--+-...++++. 
T Consensus        39 ~~~k~~~~i~~~~~~v~~~l~d~~~-~~~w~~~-~~~~~vl~~~~~~~~i~~~~~~~p~p~~~Rdfv~~~~~~~~~~~~~  116 (193)
T cd00177          39 KLLKAEGVIPASPEQVFELLMDIDL-RKKWDKN-FEEFEVIEEIDEHTDIIYYKTKPPWPVSPRDFVYLRRRRKLDDGTY  116 (193)
T ss_pred             eeEEEEEEECCCHHHHHHHHhCCch-hhchhhc-ceEEEEEEEeCCCeEEEEEEeeCCCccCCccEEEEEEEEEcCCCeE
Confidence            34677889999999999999 8765 7899995 888888876533234444445433211   122112122233222 


Q ss_pred             eEEEEEEeccc---cCCCc-eeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHHH-hHHHHHHHHHHHHHHH
Q 031431           79 KLKYSVIEGND---LADYK-LEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAK-AGKERVLGVVKGVEAY  150 (159)
Q Consensus        79 ~~~y~v~eg~~---l~~Y~-~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~~-~~~~~~~~~~k~le~~  150 (159)
                      .+...=++.+.   ...|. .......+.++|.++++|.+++.+..++.+..  |.-.+. .+++.+..+.+.+..+
T Consensus       117 ~~~~~Si~~~~~p~~~~~vR~~~~~~~~~i~~~~~~~~~vt~~~~~D~~g~i--P~~~~~~~~~~~~~~~~~~~~~~  191 (193)
T cd00177         117 VIVSKSVDHDSHPKEKGYVRAEIKLSGWIIEPLDPGKTKVTYVLQVDPKGSI--PKSLVNSAAKKQLASFLKDLRKA  191 (193)
T ss_pred             EEEEeecCCCCCCCCCCcEEEEEEccEEEEEECCCCCEEEEEEEeeCCCCCc--cHHHHHhhhhhccHHHHHHHHHh
Confidence            11111122211   11211 11112234567877788999999999998753  333333 4444555666655543

This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro

>PF08982 DUF1857: Domain of unknown function (DUF1857); InterPro: IPR015075 This protein has no known function

Probab=96.16  E-value=0.35  Score=35.86  Aligned_cols=68  Identities=18%  Similarity=0.377  Sum_probs=40.3

Q ss_pred             EEEEEEEcCCH--------HHHHhhh--cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEecCCceeEEEEEEEEEec
Q 031431            6 YESEETYAVPP--------ARMFNAL--ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQVKYAKHKIEEEDK   75 (159)
Q Consensus         6 ~~~e~~i~apa--------~~vW~~~--d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~~~~kErl~~~D~   75 (159)
                      ++..+.||-|.        +++|+-+  ...+ -..+.|+ +.+|++++.. +..-.|.++|  |+  ..++|++. +.+
T Consensus         2 ~~htvpIN~p~~~~~~LTr~QlW~GL~~kar~-p~~Fvp~-i~~c~Vl~e~-~~~~~R~v~f--g~--~~v~E~v~-~~~   73 (149)
T PF08982_consen    2 FEHTVPINPPGASLPVLTREQLWRGLVLKARN-PQLFVPG-IDSCEVLSES-DTVLTREVTF--GG--ATVRERVT-LYP   73 (149)
T ss_dssp             EEEEEE------------HHHHHHHHHHHHH--GGGT-TT---EEEEEEE--SSEEEEEEEE--TT--EEEEEEEE-EET
T ss_pred             ccEEEecCCCcccCCccCHHHHHHHHHHHHhC-hhhCccc-cCeEEEEecC-CCeEEEEEEE--CC--cEEEEEEE-EeC
Confidence            45566665554        5799998  3333 3357785 9999999776 3467799999  33  48999977 555


Q ss_pred             ccceEEE
Q 031431           76 VNLKLKY   82 (159)
Q Consensus        76 ~~~~~~y   82 (159)
                      ..+ +.|
T Consensus        74 ~~~-V~f   79 (149)
T PF08982_consen   74 PER-VDF   79 (149)
T ss_dssp             TTE-EEE
T ss_pred             CcE-EEE
Confidence            554 566

It is found in various hypothetical bacterial and fungal proteins. ; PDB: 2FFS_B.

>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family

Probab=96.15  E-value=0.44  Score=36.88  Aligned_cols=146  Identities=7%  Similarity=0.045  Sum_probs=80.9

Q ss_pred             cEEEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEec---CCceeEE-E-EEEEEEecc
Q 031431            3 VVTYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVE---GGQVKYA-K-HKIEEEDKV   76 (159)
Q Consensus         3 ~~~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~---g~~~~~~-k-Erl~~~D~~   76 (159)
                      ...+..+.+|++|++++.+++ |.. +.++|.|. ..+.+.++..+..-.+-.+.+..   ...-..+ . -.++.+++ 
T Consensus        45 ~~~~k~e~~i~~~~~~~~~vl~d~~-~~~~W~p~-~~~~~~l~~~~~~~~v~y~~~~~PwPv~~RD~v~~~~~~~~~~~-  121 (215)
T cd08877          45 LLSLRMEGEIDGPLFNLLALLNEVE-LYKTWVPF-CIRSKKVKQLGRADKVCYLRVDLPWPLSNREAVFRGFGVDRLEE-  121 (215)
T ss_pred             EEEEEEEEEecCChhHeEEEEehhh-hHhhhccc-ceeeEEEeecCCceEEEEEEEeCceEecceEEEEEEEEEeeecc-
Confidence            356788899999999999999 876 58999997 45555554432212222222211   1110111 1 11222322 


Q ss_pred             cceEEE--EEEecc----------c--cC--CCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHHH-hHHHH
Q 031431           77 NLKLKY--SVIEGN----------D--LA--DYKLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAK-AGKER  139 (159)
Q Consensus        77 ~~~~~y--~v~eg~----------~--l~--~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~~-~~~~~  139 (159)
                      +..+..  .-+..+          +  .+  ..+.......+.++|.++++|.+++.+..+|.+.- .|.-.+. .+++.
T Consensus       122 ~~~i~i~~~si~~~~~~~~~~~~~iP~~~~~~vR~~~~~~~~~i~p~~~~~t~v~~~~~~DP~g~~-IP~~liN~~~k~~  200 (215)
T cd08877         122 NGQIVILLKSIDDDPEFLKLTDLDIPSTSAKGVRRIIKYYGFVITPISPTKCYLRFVANVDPKMSL-VPKSLLNFVARKF  200 (215)
T ss_pred             CCCEEEEEecCCCCcccccccCCcCCCCCCCceEEEEecceEEEEEcCCCCeEEEEEEEcCCCccc-CCHHHHHHHHHHH
Confidence            332221  111100          0  11  11223334455678888889999999988887652 3344444 66777


Q ss_pred             HHHHHHHHHHHHh
Q 031431          140 VLGVVKGVEAYLQ  152 (159)
Q Consensus       140 ~~~~~k~le~~l~  152 (159)
                      +..+++.|.+-+.
T Consensus       201 ~~~~~~~l~k~~~  213 (215)
T cd08877         201 AGLLFEKIQKAAK  213 (215)
T ss_pred             HHHHHHHHHHHHh
Confidence            7888888876543

Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a

>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins

Probab=95.60  E-value=0.91  Score=36.22  Aligned_cols=116  Identities=13%  Similarity=0.006  Sum_probs=67.5

Q ss_pred             EEEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEec--CCce-eEEEEEEEEEec-cc-
Q 031431            4 VTYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVE--GGQV-KYAKHKIEEEDK-VN-   77 (159)
Q Consensus         4 ~~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~--g~~~-~~~kErl~~~D~-~~-   77 (159)
                      ..+..+.++++|++++++++ |... .++|.++ +.++++++--+.---|..++-.+  ..+. ..+..+-..... .+ 
T Consensus        78 l~fk~e~~vdvs~~~l~~LL~D~~~-r~~Wd~~-~~e~~vI~qld~~~~vY~~~~pPw~Pvk~RD~V~~~s~~~~~~dg~  155 (236)
T cd08914          78 LSVWVEKHVKRPAHLAYRLLSDFTK-RPLWDPH-FLSCEVIDWVSEDDQIYHITCPIVNNDKPKDLVVLVSRRKPLKDGN  155 (236)
T ss_pred             EEEEEEEEEcCCHHHHHHHHhChhh-hchhHHh-hceEEEEEEeCCCcCEEEEecCCCCCCCCceEEEEEEEEecCCCCC
Confidence            46788889999999999999 9998 8999996 88888876543211266655332  1111 222222111112 22 


Q ss_pred             -ceE-EEEEEecc--ccCCCc-eeE-EEEEEEEEECCCCCeEEEEEEEEEE
Q 031431           78 -LKL-KYSVIEGN--DLADYK-LEK-ISFEHQWRASPNGGSICKTICKLHA  122 (159)
Q Consensus        78 -~~~-~y~v~eg~--~l~~Y~-~~~-~~~~~~~~p~~~g~t~v~W~~~~e~  122 (159)
                       ..+ ..++-.--  +.++|- ... .+.. .++|.++++|.++..+.-+|
T Consensus       156 ~~~I~~~SVp~~~~Pp~kg~VRv~~~~~G~-~I~pl~~~~~~VtY~~~~dP  205 (236)
T cd08914         156 TYVVAVKSVILPSVPPSPQYIRSEIICAGF-LIHAIDSNSCTVSYFNQISA  205 (236)
T ss_pred             EEEEEEeecccccCCCCCCcEEeEEEEEEE-EEEEcCCCcEEEEEEEEcCC
Confidence             211 12222201  122332 222 2222 56888888999999998888

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.

>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain

Probab=95.14  E-value=1.1  Score=34.38  Aligned_cols=119  Identities=12%  Similarity=0.116  Sum_probs=66.8

Q ss_pred             EEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEec---CCceeEEEEEEEEEecccc--
Q 031431            5 TYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVE---GGQVKYAKHKIEEEDKVNL--   78 (159)
Q Consensus         5 ~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~---g~~~~~~kErl~~~D~~~~--   78 (159)
                      -+..+.+++++++++++.+ |..   ++|.+. +.++++++--+.-=.|-...+..   ..+-.++--|....+.++.  
T Consensus        45 ~~K~~~~v~a~~~~v~~~l~d~r---~~Wd~~-~~~~~vie~id~~~~i~y~~~~~p~pv~~RDfV~~r~~~~~~~~g~~  120 (197)
T cd08869          45 LWRASTEVEAPPEEVLQRILRER---HLWDDD-LLQWKVVETLDEDTEVYQYVTNSMAPHPTRDYVVLRTWRTDLPKGAC  120 (197)
T ss_pred             EEEEEEEeCCCHHHHHHHHHHHH---hccchh-hheEEEEEEecCCcEEEEEEeeCCCCCCCceEEEEEEEEecCCCCcE
Confidence            3578899999999999988 743   799996 77777775542211122222221   1111344444443333332  


Q ss_pred             eEEEEEEec--cccCCC-ceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCC
Q 031431           79 KLKYSVIEG--NDLADY-KLEKISFEHQWRASPNGGSICKTICKLHAKGEVE  127 (159)
Q Consensus        79 ~~~y~v~eg--~~l~~Y-~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~  127 (159)
                      .+...=++-  ..-.+| +.......+.++|.++++|.+++.+..+|.|..+
T Consensus       121 ~i~~~Sv~~~~~~p~g~VR~~~~~~g~~i~p~~~~~t~vty~~~~Dp~G~iP  172 (197)
T cd08869         121 VLVETSVEHTEPVPLGGVRAVVLASRYLIEPCGSGKSRVTHICRVDLRGRSP  172 (197)
T ss_pred             EEEEECCcCCCCCCCCCEEEEEEeeeEEEEECCCCCeEEEEEEEECCCCCCC
Confidence            222222211  110121 2233334556789877889999999999987643

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul

>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains

Probab=94.81  E-value=1.6  Score=34.61  Aligned_cols=144  Identities=13%  Similarity=0.039  Sum_probs=78.3

Q ss_pred             EEEEEEEEc-CCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEecC---CceeEE-EEEEEEEeccc-
Q 031431            5 TYESEETYA-VPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEG---GQVKYA-KHKIEEEDKVN-   77 (159)
Q Consensus         5 ~~~~e~~i~-apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g---~~~~~~-kErl~~~D~~~-   77 (159)
                      .+..+.+++ ++++.+.+++ |... .++|... +.+.++++-...--.|-...+..-   ..-..+ .=++...++.. 
T Consensus        53 ~~Ka~~~v~~vt~~~~~~~l~D~~~-r~~Wd~~-~~~~~vie~l~~~~~I~Y~~~k~PwPvs~RD~V~~~~~~~~~d~~~  130 (235)
T cd08872          53 PLKATHAVKGVTGHEVCHYFFDPDV-RMDWETT-LENFHVVETLSQDTLIFHQTHKRVWPAAQRDALFVSHIRKIPALEE  130 (235)
T ss_pred             eEEEEEEECCCCHHHHHHHHhChhh-HHHHHhh-hheeEEEEecCCCCEEEEEEccCCCCCCCcEEEEEEEEEecCcccc
Confidence            367777887 9999999999 9886 7899985 888777655321011212221110   100111 11222233321 


Q ss_pred             ----c---eEEEEEEeccccCC-CceeEEEEE---------------EEEEECCCCCeEEEEEEEEEEcCCCCCCHHHHH
Q 031431           78 ----L---KLKYSVIEGNDLAD-YKLEKISFE---------------HQWRASPNGGSICKTICKLHAKGEVEVTEEQAK  134 (159)
Q Consensus        78 ----~---~~~y~v~eg~~l~~-Y~~~~~~~~---------------~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~~  134 (159)
                          .   .+..++. -+-.+. -+.-.+...               .+++| ++++|.+++.+..+|.|.  .|.-.++
T Consensus       131 ~~~~~~~vii~~Sv~-h~~~P~~~g~VRv~~~~~~~~~~~i~~~~g~~~~t~-~~~~~~ity~~~~dPgG~--iP~wvvn  206 (235)
T cd08872         131 PNAHDTWIVCNFSVD-HDSAPLNNKCVRAKLTVAMICQTFVSPPDGNQEITR-DNILCKITYVANVNPGGW--APASVLR  206 (235)
T ss_pred             ccCCCeEEEEEeccc-CccCCCCCCeEEEEEEeeeeeeeeeecCCCcccccC-CCCeEEEEEEEEeCCCCC--ccHHHHH
Confidence                1   1222222 111111 011111111               11234 356799999988888875  3344444


Q ss_pred             -hHHHHHHHHHHHHHHHHhhC
Q 031431          135 -AGKERVLGVVKGVEAYLQAN  154 (159)
Q Consensus       135 -~~~~~~~~~~k~le~~l~~~  154 (159)
                       .++..+-++++.|.+|++.+
T Consensus       207 ~~~k~~~P~~l~~~~~~~~~~  227 (235)
T cd08872         207 AVYKREYPKFLKRFTSYVQEK  227 (235)
T ss_pred             HHHHhhchHHHHHHHHHHHHh
Confidence             77778899999999999875

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg

>smart00234 START in StAR and phosphatidylcholine transfer protein

Probab=94.60  E-value=1.5  Score=33.23  Aligned_cols=146  Identities=14%  Similarity=0.031  Sum_probs=79.8

Q ss_pred             EEEEEEEEEcCCHHHHHh-hh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEecC-Cce---eEEEEEEEEEe-cc
Q 031431            4 VTYESEETYAVPPARMFN-AL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEG-GQV---KYAKHKIEEED-KV   76 (159)
Q Consensus         4 ~~~~~e~~i~apa~~vW~-~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g-~~~---~~~kErl~~~D-~~   76 (159)
                      ..+..+..++++++++.. ++ |... .++|.+. +.++++++-...-..|..+....- ++.   .++--|-...+ +.
T Consensus        45 ~~~k~~~~v~~~~~~~~~~~~~d~~~-r~~Wd~~-~~~~~~ie~~~~~~~i~~~~~~~~~~p~~~RDfv~~r~~~~~~~~  122 (206)
T smart00234       45 EASRAVGVVPMVCADLVEELMDDLRY-RPEWDKN-VAKAETLEVIDNGTVIYHYVSKFVAGPVSPRDFVFVRYWRELVDG  122 (206)
T ss_pred             EEEEEEEEEecChHHHHHHHHhcccc-hhhCchh-cccEEEEEEECCCCeEEEEEEecccCcCCCCeEEEEEEEEEcCCC
Confidence            456778889999998554 55 7775 7999996 777777654321134555443311 121   22222222222 23


Q ss_pred             cceEEEEEEecccc---CCC-ceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHHH-hHHHHHHHHHHHHHHHH
Q 031431           77 NLKLKYSVIEGNDL---ADY-KLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAK-AGKERVLGVVKGVEAYL  151 (159)
Q Consensus        77 ~~~~~y~v~eg~~l---~~Y-~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~~-~~~~~~~~~~k~le~~l  151 (159)
                      ...+...-++.+-.   +.| +.......+.++|.+++.|.++|....++.+..  |.-.++ .++.....+++.+-+.|
T Consensus       123 ~~vi~~~Sv~~~~~p~~~~~VR~~~~~~~~~i~p~~~~~t~vt~~~~~D~~G~i--P~~lvn~~~~~~~~~~~~~~~~~~  200 (206)
T smart00234      123 SYAVVDVSVTHPTSPPTSGYVRAENLPSGLLIEPLGNGPSKVTWVSHADLKGWL--PHWLVRSLIKSGLAEFAKTWVATL  200 (206)
T ss_pred             cEEEEEEECCCCCCCCCCCceEEEEeceEEEEEECCCCCeEEEEEEEEecCCCc--cceeehhhhhhhHHHHHHHHHHHH
Confidence            33333322222211   111 112222345567877778999999999998753  233333 45556667777777666


Q ss_pred             hh
Q 031431          152 QA  153 (159)
Q Consensus       152 ~~  153 (159)
                      ..
T Consensus       201 ~~  202 (206)
T smart00234      201 QK  202 (206)
T ss_pred             HH
Confidence            54

putative lipid-binding domain in StAR and phosphatidylcholine transfer protein

>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins

Probab=93.40  E-value=2.8  Score=32.13  Aligned_cols=142  Identities=9%  Similarity=0.055  Sum_probs=74.6

Q ss_pred             EEEEEEEcCCHHHHHhhh-c--CCCCcccccCCceeEEEEEcCCCCCCcEEEEEEec-C-C---ceeEE-EEEEEEEecc
Q 031431            6 YESEETYAVPPARMFNAL-A--SDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVE-G-G---QVKYA-KHKIEEEDKV   76 (159)
Q Consensus         6 ~~~e~~i~apa~~vW~~~-d--~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~-g-~---~~~~~-kErl~~~D~~   76 (159)
                      +..+.+|+++++++.+.+ |  ... .++|.+. +.++++++.-+..=.|-...+.. . +   +-.++ .+....+++.
T Consensus        48 ~k~~~~i~~~~~~v~~~l~d~~~~~-r~~Wd~~-~~~~~~le~id~~~~i~~~~~p~~~~~~vs~RDfV~~~~~~~~~~~  125 (206)
T cd08867          48 YRAEGIVDALPEKVIDVIIPPCGGL-RLKWDKS-LKHYEVLEKISEDLCVGRTITPSAAMGLISPRDFVDLVYVKRYEDN  125 (206)
T ss_pred             EEEEEEEcCCHHHHHHHHHhcCccc-ccccccc-ccceEEEEEeCCCeEEEEEEccccccCccCCcceEEEEEEEEeCCC
Confidence            678889999999999999 7  454 6899986 88888887653211122222211 1 1   01122 1211223332


Q ss_pred             cceEEEEEEeccc---cCCCc-eeEEEEEEEEEECC--CCCeEEEEEEEEEEcCCCCCCHHHHH-hHHHHHHHHHHHHHH
Q 031431           77 NLKLKYSVIEGND---LADYK-LEKISFEHQWRASP--NGGSICKTICKLHAKGEVEVTEEQAK-AGKERVLGVVKGVEA  149 (159)
Q Consensus        77 ~~~~~y~v~eg~~---l~~Y~-~~~~~~~~~~~p~~--~g~t~v~W~~~~e~~~~~~~~~~~~~-~~~~~~~~~~k~le~  149 (159)
                      ...+...-++-+.   .++|- .......+-+.|.+  +++|.++|.+..+|.|..  |.-.+. .+.+....+++.|..
T Consensus       126 ~~~i~~~Sv~hp~~p~~~~~VR~~~~~~g~~i~p~~~~~~~t~~~~~~~~DpkG~i--P~~lvn~~~~~~~~~~~~~lr~  203 (206)
T cd08867         126 QWSSSGKSVDIPERPPTPGFVRGYNHPCGYFCSPLKGSPDKSFLVLYVQTDLRGMI--PQSLVESAMPSNLVNFYTDLVK  203 (206)
T ss_pred             eEEEEEEeccCCCCCCCCCcEEEEeecCEEEEEECCCCCCceEEEEEEEeccCCCC--cHHHHHhhhhhhHHHHHHHHHH
Confidence            2222222222111   22221 11112223346654  357999999999999753  344433 334444566666666


Q ss_pred             HH
Q 031431          150 YL  151 (159)
Q Consensus       150 ~l  151 (159)
                      |+
T Consensus       204 ~~  205 (206)
T cd08867         204 GV  205 (206)
T ss_pred             hc
Confidence            54

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression

>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins

Probab=93.30  E-value=3  Score=32.15  Aligned_cols=145  Identities=18%  Similarity=0.171  Sum_probs=77.7

Q ss_pred             EEEEEEEEE-cCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCc-EEEEEEec---CCceeEEEEEEEEEe-cc
Q 031431            4 VTYESEETY-AVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGS-IKKFTIVE---GGQVKYAKHKIEEED-KV   76 (159)
Q Consensus         4 ~~~~~e~~i-~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~Gs-vR~~~~~~---g~~~~~~kErl~~~D-~~   76 (159)
                      ..+..+.++ ++|++.+++++ |... .++|.+. +.+.++++-++..|+ |-.+.+..   -.+-.++--|-.-.| +.
T Consensus        50 ~~~k~~~~~~~~s~~~~~~~l~D~~~-r~~Wd~~-~~~~~~le~~~~~~~~i~y~~~~~P~P~s~RD~V~~r~~~~~~~~  127 (209)
T cd08870          50 YEYLVRGVFEDCTPELLRDFYWDDEY-RKKWDET-VIEHETLEEDEKSGTEIVRWVKKFPFPLSDREYVIARRLWESDDR  127 (209)
T ss_pred             eEEEEEEEEcCCCHHHHHHHHcChhh-Hhhhhhh-eeeEEEEEecCCCCcEEEEEEEECCCcCCCceEEEEEEEEEcCCC
Confidence            457777888 67999999999 8776 7899996 666777765532122 12222211   111123333322233 22


Q ss_pred             cceEEEEEEeccccC--CC-ceeEEEEEEEEEEC--CCCCeEEEEEEEEEEcCCCCCCHHHHH-hHHHHHHHHHHHHHHH
Q 031431           77 NLKLKYSVIEGNDLA--DY-KLEKISFEHQWRAS--PNGGSICKTICKLHAKGEVEVTEEQAK-AGKERVLGVVKGVEAY  150 (159)
Q Consensus        77 ~~~~~y~v~eg~~l~--~Y-~~~~~~~~~~~~p~--~~g~t~v~W~~~~e~~~~~~~~~~~~~-~~~~~~~~~~k~le~~  150 (159)
                      ...+...-+.-+..+  +| +.......+.+.|.  ++++|.+.++.--+|.+.  .|.-.++ .++...-.+++.|..-
T Consensus       128 ~~~i~~~sv~~~~~P~~~~vRv~~~~~~~~i~p~~~~~~~t~~~~~~~~dp~G~--IP~wlvN~~~~~~~~~~l~~l~~a  205 (209)
T cd08870         128 SYVCVTKGVPYPSVPRSGRKRVDDYESSLVIRAVKGDGQGSACEVTYFHNPDGG--IPRELAKLAVKRGMPGFLKKLENA  205 (209)
T ss_pred             EEEEEEeCCcCCCCCCCCcEEEEEEEeEEEEEEecCCCCceEEEEEEEECCCCC--CCHHHHHHHHHhhhHHHHHHHHHH
Confidence            222222222211110  11 12222233445676  556788888877777544  4455544 5556667788888776


Q ss_pred             Hh
Q 031431          151 LQ  152 (159)
Q Consensus       151 l~  152 (159)
                      +.
T Consensus       206 ~~  207 (209)
T cd08870         206 LR  207 (209)
T ss_pred             Hh
Confidence            54

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo

>PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria

Probab=92.85  E-value=2.9  Score=30.86  Aligned_cols=107  Identities=19%  Similarity=0.205  Sum_probs=57.3

Q ss_pred             EEEEEEEcCCHHHHHhhh-cCCCCcc---cccCC---ceeEEEEEcCCCCCCcEEEE-EEec-CCc---------eeEEE
Q 031431            6 YESEETYAVPPARMFNAL-ASDNLPS---KIFPD---VVKNVEVLEGNGGPGSIKKF-TIVE-GGQ---------VKYAK   67 (159)
Q Consensus         6 ~~~e~~i~apa~~vW~~~-d~~~~lp---~~~P~---~v~s~~~~eG~g~~GsvR~~-~~~~-g~~---------~~~~k   67 (159)
                      |+.++++++|+|+||+++ |..= +.   +-+..   .+.+++ .+|+|  -+++.- .+.. ..|         ...++
T Consensus         1 f~~~~~~~~~~~~v~~~~~d~~y-~~~r~~~~g~~~~~~~~~~-~~~~g--~~v~~~~~v~~~~lP~~~~k~v~~~l~v~   76 (159)
T PF10698_consen    1 FEHSVEYPAPVERVWAAFTDEDY-WEARCAALGADNAEVESFE-VDGDG--VRVTVRQTVPADKLPSAARKFVGGDLRVT   76 (159)
T ss_pred             CeEEEEcCCCHHHHHHHHcCHHH-HHHHHHHcCCCCceEEEEE-EcCCe--EEEEEEEecChhhCCHHHHHhcCCCeEEE
Confidence            467899999999999999 6531 11   12221   244444 23433  111111 1221 111         01222


Q ss_pred             --EEEEEEecccceEEEEEEe-ccccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEc
Q 031431           68 --HKIEEEDKVNLKLKYSVIE-GNDLADYKLEKISFEHQWRASPNGGSICKTICKLHAK  123 (159)
Q Consensus        68 --Erl~~~D~~~~~~~y~v~e-g~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~  123 (159)
                        |+-...++..+..+|++-- |.+      .++..+++|.|. +++|.+.+.++....
T Consensus        77 ~~e~w~~~~~g~~~g~~~~~~~G~P------~~~~G~~~L~~~-~~gt~~~~~g~v~v~  128 (159)
T PF10698_consen   77 RTETWTPLDDGRRTGTFTVSIPGAP------VSISGTMRLRPD-GGGTRLTVEGEVKVK  128 (159)
T ss_pred             EEEEEecCCCCeEEEEEEEEecCce------EEEEEEEEEecC-CCCEEEEEEEEEEEE
Confidence              2332336667776776432 322      334556677884 457999999999884

The function is not known.

>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins

Probab=92.11  E-value=4.5  Score=31.22  Aligned_cols=145  Identities=11%  Similarity=0.039  Sum_probs=78.8

Q ss_pred             EEEEEEEEE-cCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCc-EEEEEEecC---CceeEEEEEEEEEeccc
Q 031431            4 VTYESEETY-AVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGS-IKKFTIVEG---GQVKYAKHKIEEEDKVN   77 (159)
Q Consensus         4 ~~~~~e~~i-~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~Gs-vR~~~~~~g---~~~~~~kErl~~~D~~~   77 (159)
                      ..+..+.++ ++|++.+.+++ |... .++|.+. +.++++++.+...++ |-.+.+..-   ..-.++-.|-...|+++
T Consensus        45 ~~~k~~~~~~d~s~~~~~~~~~D~~~-r~~Wd~~-~~~~~~le~~~~~~~~i~y~~~~~P~P~s~RD~V~~r~~~~~~~~  122 (207)
T cd08911          45 YEYKVYGSFDDVTARDFLNVQLDLEY-RKKWDAT-AVELEVVDEDPETGSEIIYWEMQWPKPFANRDYVYVRRYIIDEEN  122 (207)
T ss_pred             EEEEEEEEEcCCCHHHHHHHHhCHHH-HHHHHhh-heeEEEEEccCCCCCEEEEEEEECCCCCCCccEEEEEEEEEcCCC
Confidence            356676667 99999999999 8876 7899996 777888876432222 222222211   11124444544566555


Q ss_pred             ceE---EEEEEe-c-cccCCC-ceeEEEEEEEEEECC---CCCeEEEEEEEEEEcCCCCCCHHHHH-hHHHHHHHHHHHH
Q 031431           78 LKL---KYSVIE-G-NDLADY-KLEKISFEHQWRASP---NGGSICKTICKLHAKGEVEVTEEQAK-AGKERVLGVVKGV  147 (159)
Q Consensus        78 ~~~---~y~v~e-g-~~l~~Y-~~~~~~~~~~~~p~~---~g~t~v~W~~~~e~~~~~~~~~~~~~-~~~~~~~~~~k~l  147 (159)
                      ..+   .+++-. . +..++| +.......+.+.|.+   +++|.+.+..--+|.+  ..|.-.++ .++...-.+++.|
T Consensus       123 ~~~~i~~~sv~hp~~P~~~g~VRv~~~~~~~~i~p~~~~~~~~~~~~~~~~~dPgG--~IP~~lvN~~~~~~~~~~l~~l  200 (207)
T cd08911         123 KLIVIVSKAVQHPSYPESPKKVRVEDYWSYMVIRPHKSFDEPGFEFVLTYFDNPGV--NIPSYITSWVAMSGMPDFLERL  200 (207)
T ss_pred             CEEEEEEecCCCCCCCCCCCCEEEEEeEEEEEEEeCCCCCCCCeEEEEEEEeCCCC--ccCHHHHHHHHHhhccHHHHHH
Confidence            431   111211 1 001111 223333445556763   4578877655444443  34444444 5566667788877


Q ss_pred             HHHHh
Q 031431          148 EAYLQ  152 (159)
Q Consensus       148 e~~l~  152 (159)
                      ...++
T Consensus       201 ~~a~~  205 (207)
T cd08911         201 RNAAL  205 (207)
T ss_pred             HHHHh
Confidence            76654

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.

>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []

Probab=91.06  E-value=5.3  Score=30.03  Aligned_cols=146  Identities=13%  Similarity=0.113  Sum_probs=85.7

Q ss_pred             EEEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEecCC--ce---eEEEEEEEEE-ecc
Q 031431            4 VTYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGG--QV---KYAKHKIEEE-DKV   76 (159)
Q Consensus         4 ~~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~--~~---~~~kErl~~~-D~~   76 (159)
                      ..+..+..++++++++...+ +...   .|-+. +.++++++--..-..|..+.+..-.  +.   .++--|.... .+.
T Consensus        46 ~~~k~~~~v~~~~~~~~~~~~~~~~---~Wd~~-~~~~~~le~~~~~~~i~~~~~~~~~~~p~~~RDfv~~~~~~~~~~~  121 (206)
T PF01852_consen   46 KMFKAEGVVPASPEQVVEDLLDDRE---QWDKM-CVEAEVLEQIDEDTDIVYFVMKSPWPGPVSPRDFVFLRSWRKDEDG  121 (206)
T ss_dssp             EEEEEEEEESSCHHHHHHHHHCGGG---HHSTT-EEEEEEEEEEETTEEEEEEEEE-CTTTTSSEEEEEEEEEEEECTTS
T ss_pred             eEEEEEEEEcCChHHHHHHHHhhHh---hcccc-hhhheeeeecCCCCeEEEEEecccCCCCCCCcEEEEEEEEEEeccc
Confidence            45678889999999888888 6553   89985 7788877663222456655544322  32   2222222222 333


Q ss_pred             cceEEEEEEeccc-c---CC-CceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHHH-hHHHHHHHHHHHHHHH
Q 031431           77 NLKLKYSVIEGND-L---AD-YKLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAK-AGKERVLGVVKGVEAY  150 (159)
Q Consensus        77 ~~~~~y~v~eg~~-l---~~-Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~~-~~~~~~~~~~k~le~~  150 (159)
                      ...+..+=++.+. .   +. .+.......+.++|.+++.|.+++...-++.+.  .|.-.++ .+......+++.+-++
T Consensus       122 ~~~i~~~Si~~~~~~~~~~~~VR~~~~~s~~~i~~~~~~~~~vt~~~~~D~~G~--iP~~~~n~~~~~~~~~~~~~~~~~  199 (206)
T PF01852_consen  122 TYVIVSRSIDHPQYPPNSKGYVRAEILISGWVIRPLGDGRTRVTYVSQVDPKGW--IPSWLVNMVVKSQPPNFLKNLRKA  199 (206)
T ss_dssp             EEEEEEEEEEBTTSSTT-TTSEEEEEESEEEEEEEETTCEEEEEEEEEEESSSS--SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEEeeeccccccccccCcceeeeeeEeEEEEEccCCCceEEEEEEECCCCC--ChHHHHHHHHHHhHHHHHHHHHHH
Confidence            3344443233222 1   11 122222234556888777799999988888875  3344444 4455567888888888


Q ss_pred             HhhCC
Q 031431          151 LQANP  155 (159)
Q Consensus       151 l~~~~  155 (159)
                      |.+++
T Consensus       200 ~~~~~  204 (206)
T PF01852_consen  200 LKKQK  204 (206)
T ss_dssp             HHHCC
T ss_pred             HHHhc
Confidence            87765

StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....

>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain

Probab=90.27  E-value=7.3  Score=30.32  Aligned_cols=119  Identities=8%  Similarity=0.078  Sum_probs=65.9

Q ss_pred             EEEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCC-CCCcEEEE-EEe-cCCceeEEEEEEEEEecccce
Q 031431            4 VTYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNG-GPGSIKKF-TIV-EGGQVKYAKHKIEEEDKVNLK   79 (159)
Q Consensus         4 ~~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g-~~GsvR~~-~~~-~g~~~~~~kErl~~~D~~~~~   79 (159)
                      ..+..+.+++++++++...+ |.   .++|.+. +.+..+++--+ ..=-++.. ... +...-.++.-|.-..|..+..
T Consensus        52 ~~~r~~~~i~a~~~~vl~~lld~---~~~Wd~~-~~e~~vIe~ld~~~~I~Yy~~~~PwP~~~RD~V~~Rs~~~~~~~g~  127 (204)
T cd08908          52 RLWRTTIEVPAAPEEILKRLLKE---QHLWDVD-LLDSKVIEILDSQTEIYQYVQNSMAPHPARDYVVLRTWRTNLPKGA  127 (204)
T ss_pred             EEEEEEEEeCCCHHHHHHHHHhh---HHHHHHH-hhheEeeEecCCCceEEEEEccCCCCCCCcEEEEEEEEEEeCCCCe
Confidence            45788999999999999999 66   4789986 55555554432 11111111 111 111113444444434444443


Q ss_pred             EEEEEE--eccccC--CCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCC
Q 031431           80 LKYSVI--EGNDLA--DYKLEKISFEHQWRASPNGGSICKTICKLHAKGEV  126 (159)
Q Consensus        80 ~~y~v~--eg~~l~--~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~  126 (159)
                      +.-...  +-+.++  ..+.-.......++|.++|+|.++..+..+|.|..
T Consensus       128 ~~I~~~Sv~h~~~P~~~VR~~~~~~~w~i~P~g~g~t~vtyi~~~DPgG~i  178 (204)
T cd08908         128 CALLATSVDHDRAPVAGVRVNVLLSRYLIEPCGSGKSKLTYMCRIDLRGHM  178 (204)
T ss_pred             EEEEEeecCcccCCcCceEEEEEeeEEEEEECCCCcEEEEEEEEeCCCCCC
Confidence            322211  111111  11222233455678988889999999999998763

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.

>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins

Probab=84.99  E-value=16  Score=28.21  Aligned_cols=142  Identities=11%  Similarity=0.053  Sum_probs=74.0

Q ss_pred             EEEEEEEEEc-CCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEecC---CceeEE-EEEEEEEeccc
Q 031431            4 VTYESEETYA-VPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEG---GQVKYA-KHKIEEEDKVN   77 (159)
Q Consensus         4 ~~~~~e~~i~-apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g---~~~~~~-kErl~~~D~~~   77 (159)
                      ..+..+.+++ ++++.+.+++ |... .++|.+.. .++...+.++.  -|-.+.+..-   ..-.++ .-+...+|...
T Consensus        49 ~~~k~~~~~~~~s~~~~~~~l~D~~~-r~~Wd~~~-~~~~~~~~~~~--~i~y~~~k~PwPvs~RD~V~~r~~~~~~~~~  124 (207)
T cd08910          49 YEYKVFGVLEDCSPSLLADVYMDLEY-RKQWDQYV-KELYEKECDGE--TVIYWEVKYPFPLSNRDYVYIRQRRDLDVEG  124 (207)
T ss_pred             EEEEEEEEEcCCCHHHHHHHHhCHHH-HHHHHHHH-HhheeecCCCC--EEEEEEEEcCCCCCCceEEEEEEeccccCCC
Confidence            4567778887 7999999999 9886 78999964 44322222221  2223333211   111122 11222344444


Q ss_pred             ceEEE---EEEeccc---cCCC-ceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHHH-hHHHHHHHHHHHHHH
Q 031431           78 LKLKY---SVIEGND---LADY-KLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAK-AGKERVLGVVKGVEA  149 (159)
Q Consensus        78 ~~~~y---~v~eg~~---l~~Y-~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~~-~~~~~~~~~~k~le~  149 (159)
                      ..+..   ...+-+.   .++| +...+...+.++|.++++|.+++..-.+|.+.  .|.-.++ .+++....+++.|..
T Consensus       125 ~~~~iv~~~s~~~p~~P~~~~~VRv~~~~~~~~i~p~~~~~t~i~~~~~~DPgG~--IP~wlvN~~~~~~~~~~l~~l~k  202 (207)
T cd08910         125 RKIWVILARSTSLPQLPEKPGVIRVKQYKQSLAIESDGKKGSKVFMYYFDNPGGM--IPSWLINWAAKNGVPNFLKDMQK  202 (207)
T ss_pred             CeEEEEEecCCCCCCCCCCCCCEEEEEEEEEEEEEeCCCCceEEEEEEEeCCCCc--chHHHHHHHHHHhhHHHHHHHHH
Confidence            32111   1111111   1111 22333444556777677898888877777554  3444444 556666777777766


Q ss_pred             HH
Q 031431          150 YL  151 (159)
Q Consensus       150 ~l  151 (159)
                      ..
T Consensus       203 a~  204 (207)
T cd08910         203 AC  204 (207)
T ss_pred             HH
Confidence            54

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.

>COG4276 Uncharacterized conserved protein [Function unknown]

Probab=83.48  E-value=15  Score=26.94  Aligned_cols=113  Identities=15%  Similarity=0.078  Sum_probs=62.6

Q ss_pred             EEEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCC-CCCCcEEEEEEe-cCCce-eEEEEEEEE--Eeccc
Q 031431            4 VTYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGN-GGPGSIKKFTIV-EGGQV-KYAKHKIEE--EDKVN   77 (159)
Q Consensus         4 ~~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~-g~~GsvR~~~~~-~g~~~-~~~kErl~~--~D~~~   77 (159)
                      +++....+|+||.+-||+-. ..++ +..+-|. .+ +-.-+|+ -+.|+--.+.+. -|.++ .+-+-|.++  +|+..
T Consensus         2 ~tF~~~~~i~aP~E~VWafhsrpd~-lq~LTpp-w~-VV~p~g~eitqgtri~m~l~pfglp~~~tW~Arhte~~~d~~~   78 (153)
T COG4276           2 GTFVYRTTITAPHEMVWAFHSRPDA-LQRLTPP-WI-VVLPLGSEITQGTRIAMGLTPFGLPAGLTWVARHTESGFDNGS   78 (153)
T ss_pred             cceEEeeEecCCHHHHhhhhcCccH-HHhcCCC-cE-EeccCCCcccceeeeeecceeecCCCCceEEEEeeecccCCcc
Confidence            56888899999999999998 6665 4455554 22 2222342 123333222221 12111 122233344  66665


Q ss_pred             ceEEEEEEeccccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCC
Q 031431           78 LKLKYSVIEGNDLADYKLEKISFEHQWRASPNGGSICKTICKLHAKGE  125 (159)
Q Consensus        78 ~~~~y~v~eg~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~  125 (159)
                      + ++=..+.|+.-..|  -.-  +..|.+. +|+|++.=++.|+...+
T Consensus        79 ~-FtDv~i~gPfp~~~--WrH--tH~F~~e-gg~TvliD~Vsye~p~g  120 (153)
T COG4276          79 R-FTDVCITGPFPALN--WRH--THNFVDE-GGGTVLIDSVSYELPAG  120 (153)
T ss_pred             e-eeeeeecCCcccee--eEE--EeeeecC-CCcEEEEeeEEeeccCc
Confidence            5 45556666652222  222  3345665 45899999999998654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	159
1e09_A	159	Solution Structure Of The Major Cherry Allergen Pru		9e-40
1h2o_A	159	Solution Structure Of The Major Cherry Allergen Pru		8e-39
2lpx_A	170	Solution Structure Of Strawberry Allergen Fra A 1e		7e-36
4a8u_A	159	Crystal Structure Of Native Birch Pollen Allergen B		4e-33
4a84_A	159	Crystal Structure Of Major Birch Pollen Allergen Be		5e-33
4a80_A	159	Crystal Structure Of Major Birch Pollen Allergen Be		5e-33
1fsk_A	159	Complex Formation Between A Fab Fragment Of A Monoc		7e-33
1b6f_A	159	Birch Pollen Allergen Bet V 1 Length = 159		7e-33
1llt_A	159	Birch Pollen Allergen Bet V 1 Mutant E45s Length =		3e-32
2qim_A	158	Crystal Structure Of Pathogenesis-Related Protein L		4e-32
1xdf_A	157	Crystal Structure Of Pathogenesis-Related Protein L		9e-32
1fm4_A	159	Crystal Structure Of The Birch Pollen Allergen Bet		5e-31
1qmr_A	159	Birch Pollen Allergen Bet V 1 Mutant N28t, K32q, E4		4e-30
2k7h_A	157	Nmr Solution Structure Of Soybean Allergen Gly M 4		7e-29
1ifv_A	155	Crystal Structure Of Pathogenesis-Related Protein L		2e-27
1icx_A	155	Crystal Structure Of Pathogenesis-Related Protein L		1e-26
3rws_A	168	Crystal Structure Of Medicago Truncatula Nodulin 13		5e-24
1tw0_A	157	Native Crystal Structure Of Spe16 Length = 157		6e-22
3ie5_A	165	Crystal Structure Of Hyp-1 Protein From Hypericum P		2e-19
2bk0_A	154	Crystal Structure Of The Major Celery Allergen Api		4e-18
2wql_A	154	Crystal Structure Of The Major Carrot Allergen Dau		1e-11
3us7_A	156	Crystal Structure Of Phytohormone Binding Protein F		7e-05
2flh_A	155	Crystal Structure Of Cytokinin-Specific Binding Pro		2e-04

>pdb|1E09|A Chain A, Solution Structure Of The Major Cherry Allergen Pru Av 1 Length = 159

Iteration: 1
 Score =  159 bits (401), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 83/160 (51%), Positives = 105/160 (65%), Gaps = 3/160 (1%)
Query: 2   GVVTYESEETYAVPPARMFNA--LASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVE 59
           GV TYESE T  +PP R+F A  L +DNL  KI P  +K+ E+LEG+GGPG+IKK T  E
Sbjct: 1   GVFTYESEFTSEIPPPRLFKAFVLDADNLVPKIAPQAIKHSEILEGDGGPGTIKKITFGE 60
Query: 60  GGQVKYAKHKIEEEDKVNLKLKYSVIEGNDLADYKLEKISFEHQWRASPNGGSICKTICK 119
           G Q  Y KHKI+  DK N    Y++IEG+ L D  LEKIS+E +  ASP+GGSI K+   
Sbjct: 61  GSQYGYVKHKIDSIDKENYSYSYTLIEGDALGD-TLEKISYETKLVASPSGGSIIKSTSH 119
Query: 120 LHAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQANPDVCN 159
            H KG VE+ EE  KAGKE+   + K +E YL+ +PD  N
Sbjct: 120 YHTKGNVEIKEEHVKAGKEKASNLFKLIETYLKGHPDAYN 159

>pdb|1H2O|A Chain A, Solution Structure Of The Major Cherry Allergen Pru Av 1 Mutant E45w Length = 159

Iteration: 1
 Score =  155 bits (393), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 82/160 (51%), Positives = 104/160 (65%), Gaps = 3/160 (1%)
Query: 2   GVVTYESEETYAVPPARMFNA--LASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVE 59
           GV TYESE T  +PP R+F A  L +DNL  KI P  +K+ E+L G+GGPG+IKK T  E
Sbjct: 1   GVFTYESEFTSEIPPPRLFKAFVLDADNLVPKIAPQAIKHSEILWGDGGPGTIKKITFGE 60
Query: 60  GGQVKYAKHKIEEEDKVNLKLKYSVIEGNDLADYKLEKISFEHQWRASPNGGSICKTICK 119
           G Q  Y KHKI+  DK N    Y++IEG+ L D  LEKIS+E +  ASP+GGSI K+   
Sbjct: 61  GSQYGYVKHKIDSIDKENYSYSYTLIEGDALGD-TLEKISYETKLVASPSGGSIIKSTSH 119
Query: 120 LHAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQANPDVCN 159
            H KG VE+ EE  KAGKE+   + K +E YL+ +PD  N
Sbjct: 120 YHTKGNVEIKEEHVKAGKEKASNLFKLIETYLKGHPDAYN 159

>pdb|2LPX|A Chain A, Solution Structure Of Strawberry Allergen Fra A 1e Length = 170

Iteration: 1
 Score =  145 bits (367), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 78/161 (48%), Positives = 104/161 (64%), Gaps = 3/161 (1%)
Query: 1   MGVVTYESEETYAVPPARMFNA--LASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIV 58
           MGV TYE+E T  +P  ++F A  L +DNL  KI P  VK  E+LEG+GGPG+IKK T  
Sbjct: 1   MGVYTYENEFTSDIPAPKLFKAFVLDADNLIPKIAPQAVKCAEILEGDGGPGTIKKITFG 60
Query: 59  EGGQVKYAKHKIEEEDKVNLKLKYSVIEGNDLADYKLEKISFEHQWRASPNGGSICKTIC 118
           EG    Y KHKI   DKVN    YS+IEG+ L++  +EKI +E +  ++P+GG+I KT  
Sbjct: 61  EGSHYGYVKHKIHSIDKVNHTYSYSLIEGDALSE-NIEKIDYETKLVSAPHGGTIIKTTS 119
Query: 119 KLHAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQANPDVCN 159
           K H KG+VE+ EE  KAGKE+   + K +E YL+ +P   N
Sbjct: 120 KYHTKGDVEIKEEHVKAGKEKAAHLFKLIEGYLKDHPSEYN 160

>pdb|4A8U|A Chain A, Crystal Structure Of Native Birch Pollen Allergen Bet V 1 Isoform J Length = 159

Iteration: 1
 Score =  136 bits (343), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 78/160 (48%), Positives = 99/160 (61%), Gaps = 3/160 (1%)
Query: 2   GVVTYESEETYAVPPARMFNA--LASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVE 59
           GV  YE+E T  +P AR+F A  L  DNL  K+ P  + +VE +EGNGGPG+IKK +  E
Sbjct: 1   GVFNYETEATSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPE 60
Query: 60  GGQVKYAKHKIEEEDKVNLKLKYSVIEGNDLADYKLEKISFEHQWRASPNGGSICKTICK 119
           G   KY K +++E D  N K  YSVIEG  + D  LEKIS E +  A+PNGGSI K   K
Sbjct: 61  GFPFKYVKDRVDEVDHTNFKYSYSVIEGGPVGD-TLEKISNEIKIVATPNGGSILKINNK 119
Query: 120 LHAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQANPDVCN 159
            H KG+ EV  EQ KA KE    +++ VE+YL A+ D  N
Sbjct: 120 YHTKGDHEVKAEQIKASKEMGETLLRAVESYLLAHSDAYN 159

>pdb|4A84|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A F30v Mutant In Complex With Deoxycholate Length = 159

Iteration: 1
 Score =  136 bits (342), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 77/160 (48%), Positives = 99/160 (61%), Gaps = 3/160 (1%)
Query: 2   GVVTYESEETYAVPPARMFNA--LASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVE 59
           GV  YE+E T  +P AR+F A  L  DNL  K+ P  + +VE +EGNGGPG+IKK +  E
Sbjct: 1   GVFNYETETTSVIPAARLFKAFILDGDNLVPKVAPQAISSVENIEGNGGPGTIKKISFPE 60
Query: 60  GGQVKYAKHKIEEEDKVNLKLKYSVIEGNDLADYKLEKISFEHQWRASPNGGSICKTICK 119
           G   KY K +++E D  N K  YSVIEG  + D  LEKIS E +  A+P+GGSI K   K
Sbjct: 61  GFPFKYVKDRVDEVDHTNFKYNYSVIEGGPIGD-TLEKISNEIKIVATPDGGSILKISNK 119
Query: 120 LHAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQANPDVCN 159
            H KG+ EV  EQ KA KE    +++ VE+YL A+ D  N
Sbjct: 120 YHTKGDHEVKAEQVKASKEMGETLLRAVESYLLAHSDAYN 159

>pdb|4A80|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A In Complex With 8-Anilinonaphthalene-1-Sulfonate (Ans) Length = 159

Iteration: 1
 Score =  136 bits (342), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 77/160 (48%), Positives = 99/160 (61%), Gaps = 3/160 (1%)
Query: 2   GVVTYESEETYAVPPARMFNA--LASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVE 59
           GV  YE+E T  +P AR+F A  L  DNL  K+ P  + +VE +EGNGGPG+IKK +  E
Sbjct: 1   GVFNYETETTSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPE 60
Query: 60  GGQVKYAKHKIEEEDKVNLKLKYSVIEGNDLADYKLEKISFEHQWRASPNGGSICKTICK 119
           G   KY K +++E D  N K  YSVIEG  + D  LEKIS E +  A+P+GGSI K   K
Sbjct: 61  GFPFKYVKDRVDEVDHTNFKYNYSVIEGGPIGD-TLEKISNEIKIVATPDGGSILKISNK 119
Query: 120 LHAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQANPDVCN 159
            H KG+ EV  EQ KA KE    +++ VE+YL A+ D  N
Sbjct: 120 YHTKGDHEVKAEQVKASKEMGETLLRAVESYLLAHSDAYN 159

>pdb|1FSK|A Chain A, Complex Formation Between A Fab Fragment Of A Monoclonal Igg Antibody And The Major Allergen From Birch Pollen Bet V 1 Length = 159

Iteration: 1
 Score =  135 bits (341), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 77/160 (48%), Positives = 99/160 (61%), Gaps = 3/160 (1%)
Query: 2   GVVTYESEETYAVPPARMFNA--LASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVE 59
           GV  YE+E T  +P AR+F A  L  DNL  K+ P  + +VE +EGNGGPG+IKK +  E
Sbjct: 1   GVFNYETETTSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPE 60
Query: 60  GGQVKYAKHKIEEEDKVNLKLKYSVIEGNDLADYKLEKISFEHQWRASPNGGSICKTICK 119
           G   KY K +++E D  N K  YSVIEG  + D  LEKIS E +  A+P+GGSI K   K
Sbjct: 61  GLPFKYVKDRVDEVDHTNFKYNYSVIEGGPIGD-TLEKISNEIKIVATPDGGSILKISNK 119
Query: 120 LHAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQANPDVCN 159
            H KG+ EV  EQ KA KE    +++ VE+YL A+ D  N
Sbjct: 120 YHTKGDHEVKAEQVKASKEMGETLLRAVESYLLAHSDAYN 159

>pdb|1B6F|A Chain A, Birch Pollen Allergen Bet V 1 Length = 159

Iteration: 1
 Score =  135 bits (341), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 77/160 (48%), Positives = 99/160 (61%), Gaps = 3/160 (1%)
Query: 2   GVVTYESEETYAVPPARMFNA--LASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVE 59
           GV  YE+E T  +P AR+F A  L  DNL  K+ P  + +VE +EGNGGPG+IKK +  E
Sbjct: 1   GVFNYETETTSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPE 60
Query: 60  GGQVKYAKHKIEEEDKVNLKLKYSVIEGNDLADYKLEKISFEHQWRASPNGGSICKTICK 119
           G   KY K +++E D  N K  YSVIEG  + D  LEKIS E +  A+P+GGSI K   K
Sbjct: 61  GFPFKYVKDRVDEVDHTNFKYNYSVIEGGPIGD-TLEKISNEIKIVATPDGGSILKISNK 119
Query: 120 LHAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQANPDVCN 159
            H KG+ EV  EQ KA KE    +++ VE+YL A+ D  N
Sbjct: 120 YHTKGDHEVKAEQVKASKELGETLLRAVESYLLAHSDAYN 159

>pdb|1LLT|A Chain A, Birch Pollen Allergen Bet V 1 Mutant E45s Length = 159

Iteration: 1
 Score =  134 bits (336), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 76/160 (47%), Positives = 98/160 (61%), Gaps = 3/160 (1%)
Query: 2   GVVTYESEETYAVPPARMFNA--LASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVE 59
           GV  YE+E T  +P AR+F A  L  DNL  K+ P  + +VE + GNGGPG+IKK +  E
Sbjct: 1   GVFNYETETTSVIPAARLFKAFILDGDNLFPKVAPQAISSVENISGNGGPGTIKKISFPE 60
Query: 60  GGQVKYAKHKIEEEDKVNLKLKYSVIEGNDLADYKLEKISFEHQWRASPNGGSICKTICK 119
           G   KY K +++E D  N K  YSVIEG  + D  LEKIS E +  A+P+GGSI K   K
Sbjct: 61  GLPFKYVKDRVDEVDHTNFKYNYSVIEGGPIGD-TLEKISNEIKIVATPDGGSILKISNK 119
Query: 120 LHAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQANPDVCN 159
            H KG+ EV  EQ KA KE    +++ VE+YL A+ D  N
Sbjct: 120 YHTKGDHEVKAEQVKASKEMGETLLRAVESYLLAHSDAYN 159

>pdb|2QIM|A Chain A, Crystal Structure Of Pathogenesis-Related Protein Llpr-10.2b From Yellow Lupine In Complex With Cytokinin Length = 158

Iteration: 1
 Score =  133 bits (335), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 70/159 (44%), Positives = 100/159 (62%), Gaps = 6/159 (3%)
Query: 1   MGVVTYESEETYAVPPARMFNALASDN---LPSKIFPDVVKNVEVLEGNGGPGSIKKFTI 57
           MGV T++ E T  + PA+++ AL +D    +P  +  + +++VE++EGNGGPG+IKK T 
Sbjct: 1   MGVFTFQDEYTSTIAPAKLYKALVTDADIIIPKAV--ETIQSVEIVEGNGGPGTIKKLTF 58
Query: 58  VEGGQVKYAKHKIEEEDKVNLKLKYSVIEGNDLADYKLEKISFEHQWRASPNGGSICKTI 117
           +EGG+ KY  HKIE  D+ NL   YS++ G  L D  +EKISFE +     NGGSI K  
Sbjct: 59  IEGGESKYVLHKIEAIDEANLGYNYSIVGGVGLPD-TIEKISFETKLVEGANGGSIGKVT 117
Query: 118 CKLHAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQANPD 156
            K+  KG+ +  EE+ KA K R     K +E+YL A+PD
Sbjct: 118 IKIETKGDAQPNEEEGKAAKARGDAFFKAIESYLSAHPD 156

>pdb|1XDF|A Chain A, Crystal Structure Of Pathogenesis-Related Protein Llpr-10.2a From Yellow Lupine Length = 157

Iteration: 1
 Score =  132 bits (332), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 70/158 (44%), Positives = 97/158 (61%), Gaps = 6/158 (3%)
Query: 2   GVVTYESEETYAVPPARMFNALASDNLPSKIFP---DVVKNVEVLEGNGGPGSIKKFTIV 58
           GV T+E E T  + PAR++ AL  D     I P   + ++++E +EGNGGPG+IKK T++
Sbjct: 1   GVFTFEDESTSTIAPARLYKALVKD--ADAIIPKAVEAIQSIETVEGNGGPGTIKKLTLI 58
Query: 59  EGGQVKYAKHKIEEEDKVNLKLKYSVIEGNDLADYKLEKISFEHQWRASPNGGSICKTIC 118
           EGG+ KY  HKIE  D+ NL+  YS++ G  L D  +EKISFE +     NGGSI K   
Sbjct: 59  EGGETKYVLHKIEAVDEANLRYNYSIVGGVGLPD-TIEKISFETKLVEGANGGSIGKVTI 117
Query: 119 KLHAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQANPD 156
           K+  KG+ +  EE+ KA K R     K +E YL A+P+
Sbjct: 118 KIETKGDAQPNEEEGKAAKARGDAFFKAIENYLSAHPE 155

>pdb|1FM4|A Chain A, Crystal Structure Of The Birch Pollen Allergen Bet V 1l Length = 159

Iteration: 1
 Score =  130 bits (326), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 75/160 (46%), Positives = 95/160 (59%), Gaps = 3/160 (1%)
Query: 2   GVVTYESEETYAVPPARMFNA--LASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVE 59
           GV  YE+E T  +P ARMF A  L  D L  K+ P  + +VE +EGNGGPG+IKK    E
Sbjct: 1   GVFNYETEATSVIPAARMFKAFILDGDKLVPKVAPQAISSVENIEGNGGPGTIKKINFPE 60
Query: 60  GGQVKYAKHKIEEEDKVNLKLKYSVIEGNDLADYKLEKISFEHQWRASPNGGSICKTICK 119
           G   KY K +++E D  N K  YSVIEG  + D  LEKIS E +  A+P+GG + K   K
Sbjct: 61  GFPFKYVKDRVDEVDHTNFKYNYSVIEGGPVGD-TLEKISNEIKIVATPDGGCVLKISNK 119
Query: 120 LHAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQANPDVCN 159
            H KG  EV  EQ KA KE    +++ VE+YL A+ D  N
Sbjct: 120 YHTKGNHEVKAEQVKASKEMGETLLRAVESYLLAHSDAYN 159

>pdb|1QMR|A Chain A, Birch Pollen Allergen Bet V 1 Mutant N28t, K32q, E45s, P108g Length = 159

Iteration: 1
 Score =  127 bits (318), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 73/160 (45%), Positives = 96/160 (60%), Gaps = 3/160 (1%)
Query: 2   GVVTYESEETYAVPPARMFNA--LASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVE 59
           GV  YE+E T  +P AR+F A  L  D L  ++ P  + +VE + GNGGPG+IKK +  E
Sbjct: 1   GVFNYETETTSVIPAARLFKAFILDGDTLFPQVAPQAISSVENISGNGGPGTIKKISFPE 60
Query: 60  GGQVKYAKHKIEEEDKVNLKLKYSVIEGNDLADYKLEKISFEHQWRASPNGGSICKTICK 119
           G   KY K +++E D  N K  YSVIEG  + D  LEKIS E +  A+ +GGSI K   K
Sbjct: 61  GLPFKYVKDRVDEVDHTNFKYNYSVIEGGPIGD-TLEKISNEIKIVATGDGGSILKISNK 119
Query: 120 LHAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQANPDVCN 159
            H KG+ EV  EQ KA KE    +++ VE+YL A+ D  N
Sbjct: 120 YHTKGDHEVKAEQVKASKEMGETLLRAVESYLLAHSDAYN 159

>pdb|2K7H|A Chain A, Nmr Solution Structure Of Soybean Allergen Gly M 4 Length = 157

Iteration: 1
 Score =  122 bits (307), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 69/158 (43%), Positives = 93/158 (58%), Gaps = 6/158 (3%)
Query: 2   GVVTYESEETYAVPPARMFNALASDNLPSKIFP---DVVKNVEVLEGNGGPGSIKKFTIV 58
           GV T+E E    V PA ++ AL +D     + P   D  K+VE +EGNGGPG+IKK T +
Sbjct: 1   GVFTFEDEINSPVAPATLYKALVTD--ADNVIPKALDSFKSVENVEGNGGPGTIKKITFL 58
Query: 59  EGGQVKYAKHKIEEEDKVNLKLKYSVIEGNDLADYKLEKISFEHQWRASPNGGSICKTIC 118
           E G+ K+  HKIE  D+ NL   YSV+ G  L D   EKI+F+ +  A PNGGS  K   
Sbjct: 59  EDGETKFVLHKIESIDEANLGYSYSVVGGAALPD-TAEKITFDSKLVAGPNGGSAGKLTV 117
Query: 119 KLHAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQANPD 156
           K   KG+ E  +++ K GK +   + K +EAYL A+PD
Sbjct: 118 KYETKGDAEPNQDELKTGKAKADALFKAIEAYLLAHPD 155

>pdb|1IFV|A Chain A, Crystal Structure Of Pathogenesis-Related Protein Llpr10.1b From Yellow Lupine Length = 155

Iteration: 1
 Score =  117 bits (294), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 68/160 (42%), Positives = 95/160 (59%), Gaps = 11/160 (6%)
Query: 2   GVVTYESEETYAVPPARMFNALASDNLPSKIFPDVV---KNVEVLEGNGGPGSIKKFTIV 58
           GV  +E E   AV  A++F AL  D+    I P V+   ++VE++EGNGGPG++KK T  
Sbjct: 1   GVFAFEDEHPSAVAQAKLFKALTKDS--DDIIPKVIEQIQSVEIVEGNGGPGTVKKITAS 58
Query: 59  EGGQVKYAKHKIEEEDKVNLKLKYSVIEGNDLADYKLEKISFEHQWRASPNGGSICKTIC 118
            GG   Y  HKI+  D+ + +  YS++ G  L D  LEKI+FE +  + P+GGSI K   
Sbjct: 59  HGGHTSYVLHKIDAIDEASFEYNYSIVGGTGL-DESLEKITFESKLLSGPDGGSIGKIKV 117
Query: 119 KLHAKGEV--EVTEEQAKAGKERVLGVVKGVEAYLQANPD 156
           K H KG+V  +   E+AKA   R  G+ K VE Y+ ANP+
Sbjct: 118 KFHTKGDVLSDAVREEAKA---RGTGLFKAVEGYVLANPN 154

>pdb|1ICX|A Chain A, Crystal Structure Of Pathogenesis-Related Protein Llpr10.1a From Yellow Lupine Length = 155

Iteration: 1
 Score =  115 bits (288), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 65/160 (40%), Positives = 97/160 (60%), Gaps = 11/160 (6%)
Query: 2   GVVTYESEETYAVPPARMFNALASDNLPSKIFPDVV---KNVEVLEGNGGPGSIKKFTIV 58
           G+  +E+E++  V PA+++ AL  D+   +I P V+   ++VE++EGNGGPG+IKK   +
Sbjct: 1   GIFAFENEQSSTVAPAKLYKALTKDS--DEIVPKVIEPIQSVEIVEGNGGPGTIKKIIAI 58
Query: 59  EGGQVKYAKHKIEEEDKVNLKLKYSVIEGNDLADYKLEKISFEHQWRASPNGGSICKTIC 118
             G   +  HK++  D+ NL   YS+I G  L D  LEKIS+E +    P+GGSI K   
Sbjct: 59  HDGHTSFVLHKLDAIDEANLTYNYSIIGGEGL-DESLEKISYESKILPGPDGGSIGKINV 117
Query: 119 KLHAKGEV--EVTEEQAKAGKERVLGVVKGVEAYLQANPD 156
           K H KG+V  E   +QAK    + LG+ K +E Y+ A+PD
Sbjct: 118 KFHTKGDVLSETVRDQAKF---KGLGLFKAIEGYVLAHPD 154

>pdb|1TW0|A Chain A, Native Crystal Structure Of Spe16 Length = 157

Iteration: 1
 Score = 99.8 bits (247), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 56/156 (35%), Positives = 87/156 (55%), Gaps = 4/156 (2%)
Query: 2   GVVTYESEETYAVPPARMFNALA--SDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVE 59
           GV  +  E + +V PA+++ AL   SD +  KI    ++++E++EGNGG G+IKK T  E
Sbjct: 1   GVFVFRDETSSSVAPAKLYKALTKDSDTIAQKI-DGPIQSIELVEGNGGVGTIKKITANE 59
Query: 60  GGQVKYAKHKIEEEDKVNLKLKYSVIEGNDLADYKLEKISFEHQWRASPNGGSICKTICK 119
           G +  +   K++  D+ NL   YS++ G  L +  LEK+SFE +  A   GGSI K   K
Sbjct: 60  GDKTSFVLQKVDAIDEANLGYDYSIVGGTGLPE-SLEKLSFETKVVAGSGGGSISKVTLK 118
Query: 120 LHAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQANP 155
            H KG+  +++        +  G  K +E Y+ ANP
Sbjct: 119 FHTKGDAPLSDAVRDDALAKGAGFFKAIEGYVLANP 154

>pdb|3IE5|A Chain A, Crystal Structure Of Hyp-1 Protein From Hypericum Perforatum (St John's Wort) Involved In Hypericin Biosynthesis Length = 165

Iteration: 1
 Score = 91.7 bits (226), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 59/159 (37%), Positives = 84/159 (52%), Gaps = 4/159 (2%)
Query: 1   MGVVTYESEETYAVPPARMFNALASD--NLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIV 58
           M   T   EE   + P R+F AL  +   +  K  P V K+ E++EG+GG G++ K T V
Sbjct: 7   MAAYTIVKEEESPIAPHRLFKALVLERHQVLVKAQPHVFKSGEIIEGDGGVGTVTKITFV 66
Query: 59  EGGQVKYAKHKIEEEDKVNLKLKYSVIEGNDLADYKLEKISFEHQWRASPNGGSICKTIC 118
           +G  + Y  HK +E D  N   KY++ EG+ L D  +EK+ +E +  A   GGS  K   
Sbjct: 67  DGHPLTYMLHKFDEIDAANFYCKYTLFEGDVLRD-NIEKVVYEVKLEAV-GGGSKGKITV 124
Query: 119 KLHAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQANPDV 157
             H K    V EE+ K G+++     K VE YL ANP+V
Sbjct: 125 TYHPKPGCTVNEEEVKIGEKKAYEFYKQVEEYLAANPEV 163

>pdb|2BK0|A Chain A, Crystal Structure Of The Major Celery Allergen Api G 1 Length = 154

Iteration: 1
 Score = 87.0 bits (214), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 56/156 (35%), Positives = 83/156 (53%), Gaps = 4/156 (2%)
Query: 1   MGVVTYESEETYAVPPARMFNALA--SDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIV 58
           MGV T+  E T +V   ++F       D +  K  P   K+VE+ +G+GGPG++K  T+ 
Sbjct: 1   MGVQTHVLELTSSVSAEKIFQGFVIDVDTVLPKAAPGAYKSVEI-KGDGGPGTLKIITLP 59
Query: 59  EGGQVKYAKHKIEEEDKVNLKLKYSVIEGNDLADYKLEKISFEHQWRASPNGGSICKTIC 118
           +GG +     +I+  +K  L   YSVI+G+ L  + +E I        + +GGSICKT  
Sbjct: 60  DGGPITTMTLRIDGVNKEALTFDYSVIDGDILLGF-IESIENHVVLVPTADGGSICKTTA 118
Query: 119 KLHAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQAN 154
             H KG+  V EE  K   E+   + K +EAYL AN
Sbjct: 119 IFHTKGDAVVPEENIKYANEQNTALFKALEAYLIAN 154

>pdb|2WQL|A Chain A, Crystal Structure Of The Major Carrot Allergen Dau C 1 Length = 154

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 77/156 (49%), Gaps = 4/156 (2%)
Query: 1   MGVVTYESEETYAVPPARMFNA--LASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIV 58
           MG  ++  E T +V   ++F+   L  D +  K      K+VEV +G+GG G+++  T+ 
Sbjct: 1   MGAQSHSLEITSSVSAEKIFSGIVLDVDTVIPKAATGAYKSVEV-KGDGGAGTVRIITLP 59
Query: 59  EGGQVKYAKHKIEEEDKVNLKLKYSVIEGNDLADYKLEKISFEHQWRASPNGGSICKTIC 118
           EG  +     + +  +K  L    +VI+G+ L  + +E I        + +GGSI KT  
Sbjct: 60  EGSPITTMTVRTDAVNKEALSYDSTVIDGDILLGF-IESIETHMVVVPTADGGSITKTTA 118
Query: 119 KLHAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQAN 154
             H KG+  V EE  K    +   + K +EAYL AN
Sbjct: 119 IFHTKGDAVVPEENIKFADAQNTALFKAIEAYLIAN 154

>pdb|3US7|A Chain A, Crystal Structure Of Phytohormone Binding Protein From Medicago Truncatula In Complex With Gibberellic Acid (Ga3) Length = 156

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 61/124 (49%), Gaps = 6/124 (4%)
Query: 31  KIFPDVVKNVEVLEGNGGPGSIKKFTIVEG-GQVKYAKHKIEEEDKVNLKLKYSVIEGND 89
           K+ P++VK+V+V+EG+GG G+   F  + G   V Y +  I E D+++  +   V+EG  
Sbjct: 32  KVLPNIVKDVQVIEGDGGVGTKLIFNFLPGIAPVNYQREVITEYDELSHTIGLQVVEGGY 91
Query: 90  LADYKLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAKAGK--ERVLGVVKGV 147
           L +  L       Q+ A     ++     K+    E E+ EE+ K  K  E  L  +  +
Sbjct: 92  L-NQGLSYYKTTFQFSAISENKTLVN--VKISYDHESELIEEKVKPTKTSESTLFYLGQL 148
Query: 148 EAYL 151
           E +L
Sbjct: 149 EKFL 152

>pdb|2FLH|A Chain A, Crystal Structure Of Cytokinin-Specific Binding Protein From Mung Bean In Complex With Cytokinin Length = 155

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 37/61 (60%)
Query: 31 KIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQVKYAKHKIEEEDKVNLKLKYSVIEGNDL 90
          K+ P +VK+V+++EG+GG G+I  F  +      Y + +I E D+ + ++   VIEG  L
Sbjct: 32 KVLPHIVKDVQLIEGDGGVGTILIFNFLPEVSPSYQREEITEFDESSHEIGLQVIEGGYL 91
Query: 91 A 91
          +
Sbjct: 92 S 92

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	159
4a8u_A	159	Major pollen allergen BET V 1-J; PR-10 protein; 1.	2e-50
1e09_A	159	PRU AV 1; allergen, major cherry allergen, pathoge	8e-49
1tw0_A	157	Pathogenesis-related class 10 protein SPE-16; seve	4e-48
3ie5_A	165	Phenolic oxidative coupling protein HYP-1; hyperic	7e-48
3rws_A	168	MTN13 protein; zeatin, cytokinin, hormone, lucerne	2e-46
2qim_A	158	PR10.2B; trans-zeatin, cytokinin, plant hormones,	3e-46
2vjg_A	154	Major allergen DAU C 1; major carrot allergen, pat	3e-46
2flh_A	155	Cytokinin-specific binding protein; zeatin, pathog	1e-43
1icx_A	155	Protein LLR18A, LLPR10.1A; 7-stranded beta sheet,	1e-43
2vq5_A	201	S-norcoclaurine synthase; lyase, S- norcoclaurine	1e-38
2i9y_A	166	Major latex protein-like protein 28 or MLP-like pr	6e-32
3kl1_A	190	PYL2, putative uncharacterized protein AT2G26040;	1e-11
3qrz_A	223	Abscisic acid receptor PYL5; crystal, hormone rece	9e-09
3rt2_A	183	Abscisic acid receptor PYL10; ABA-independent PP2C	3e-05
2le1_A	151	Uncharacterized protein; structural genomics, nort	7e-05
3k3k_A	211	Abscisic acid receptor PYR1; ABA receptor, plant h	9e-05
3jrs_A	208	PYL1, putative uncharacterized protein AT5G46790;	1e-04
1vjh_A	122	BET V I allergen family; structural genomics, cent	5e-04

>4a8u_A Major pollen allergen BET V 1-J; PR-10 protein; 1.16A {Betula pendula} PDB: 4a8v_A* 4a87_A* 4a81_A* 4a80_A* 4a83_A* 4a86_A* 4a85_A* 4a88_A 4a8g_A* 1b6f_A 1btv_A 1bv1_A 1fsk_A 4a84_A* 1llt_A 1fm4_A* 3k78_A 1qmr_A Length = 159

 Score =  158 bits (400), Expect = 2e-50
 Identities = 77/160 (48%), Positives = 98/160 (61%), Gaps = 3/160 (1%)

Query: 2   GVVTYESEETYAVPPARMFNALA--SDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVE 59
           GV  YE+E T  +P AR+F A     DNL  K+ P  + +VE +EGNGGPG+IKK +  E
Sbjct: 1   GVFNYETEATSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPE 60

Query: 60  GGQVKYAKHKIEEEDKVNLKLKYSVIEGNDLADYKLEKISFEHQWRASPNGGSICKTICK 119
           G   KY K +++E D  N K  YSVIEG  + D  LEKIS E +  A+PNGGSI K   K
Sbjct: 61  GFPFKYVKDRVDEVDHTNFKYSYSVIEGGPVGD-TLEKISNEIKIVATPNGGSILKINNK 119

Query: 120 LHAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQANPDVCN 159
            H KG+ EV  EQ KA KE    +++ VE+YL A+ D  N
Sbjct: 120 YHTKGDHEVKAEQIKASKEMGETLLRAVESYLLAHSDAYN 159

>1e09_A PRU AV 1; allergen, major cherry allergen, pathogenesis-related protein, heteronuclear structure; NMR {Prunus avium} SCOP: d.129.3.1 PDB: 1h2o_A 2lpx_A Length = 159

 Score =  154 bits (389), Expect = 8e-49
 Identities = 82/160 (51%), Positives = 103/160 (64%), Gaps = 3/160 (1%)

Query: 2   GVVTYESEETYAVPPARMFNALASD--NLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVE 59
           GV TYESE T  +PP R+F A   D  NL  KI P  +K+ E+LEG+GGPG+IKK T  E
Sbjct: 1   GVFTYESEFTSEIPPPRLFKAFVLDADNLVPKIAPQAIKHSEILEGDGGPGTIKKITFGE 60

Query: 60  GGQVKYAKHKIEEEDKVNLKLKYSVIEGNDLADYKLEKISFEHQWRASPNGGSICKTICK 119
           G Q  Y KHKI+  DK N    Y++IEG+ L D  LEKIS+E +  ASP+GGSI K+   
Sbjct: 61  GSQYGYVKHKIDSIDKENYSYSYTLIEGDALGD-TLEKISYETKLVASPSGGSIIKSTSH 119

Query: 120 LHAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQANPDVCN 159
            H KG VE+ EE  KAGKE+   + K +E YL+ +PD  N
Sbjct: 120 YHTKGNVEIKEEHVKAGKEKASNLFKLIETYLKGHPDAYN 159

>1tw0_A Pathogenesis-related class 10 protein SPE-16; seven antiparallel beta-sheet, plant protein; 2.20A {Pachyrhizus erosus} SCOP: d.129.3.1 PDB: 1txc_A* Length = 157

 Score =  152 bits (384), Expect = 4e-48
 Identities = 56/158 (35%), Positives = 87/158 (55%), Gaps = 4/158 (2%)

Query: 2   GVVTYESEETYAVPPARMFNALA--SDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVE 59
           GV  +  E + +V PA+++ AL   SD +  KI    ++++E++EGNGG G+IKK T  E
Sbjct: 1   GVFVFRDETSSSVAPAKLYKALTKDSDTIAQKI-DGPIQSIELVEGNGGVGTIKKITANE 59

Query: 60  GGQVKYAKHKIEEEDKVNLKLKYSVIEGNDLADYKLEKISFEHQWRASPNGGSICKTICK 119
           G +  +   K++  D+ NL   YS++ G  L +  LEK+SFE +  A   GGSI K   K
Sbjct: 60  GDKTSFVLQKVDAIDEANLGYDYSIVGGTGLPE-SLEKLSFETKVVAGSGGGSISKVTLK 118

Query: 120 LHAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQANPDV 157
            H KG+  +++        +  G  K +E Y+ ANP  
Sbjct: 119 FHTKGDAPLSDAVRDDALAKGAGFFKAIEGYVLANPAE 156

>3ie5_A Phenolic oxidative coupling protein HYP-1; hypericin, ST JOHN'S WORT, depression, allergy, PR-10 protein, cytokinin, plant hormones; HET: PGE PG4 PE8 1PE; 1.69A {Hypericum perforatum} Length = 165

 Score =  151 bits (383), Expect = 7e-48
 Identities = 58/160 (36%), Positives = 83/160 (51%), Gaps = 4/160 (2%)

Query: 1   MGVVTYESEETYAVPPARMFNALA--SDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIV 58
           M   T   EE   + P R+F AL      +  K  P V K+ E++EG+GG G++ K T V
Sbjct: 7   MAAYTIVKEEESPIAPHRLFKALVLERHQVLVKAQPHVFKSGEIIEGDGGVGTVTKITFV 66

Query: 59  EGGQVKYAKHKIEEEDKVNLKLKYSVIEGNDLADYKLEKISFEHQWRASPNGGSICKTIC 118
           +G  + Y  HK +E D  N   KY++ EG+ L D  +EK+ +E +   +  GGS  K   
Sbjct: 67  DGHPLTYMLHKFDEIDAANFYCKYTLFEGDVLRD-NIEKVVYEVK-LEAVGGGSKGKITV 124

Query: 119 KLHAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQANPDVC 158
             H K    V EE+ K G+++     K VE YL ANP+V 
Sbjct: 125 TYHPKPGCTVNEEEVKIGEKKAYEFYKQVEEYLAANPEVF 164

>2qim_A PR10.2B; trans-zeatin, cytokinin, plant hormones, plant protein, PR-1 protein, pathogenesis-related protein, allergen; HET: ZEA; 1.35A {Lupinus luteus} PDB: 3e85_A* 1xdf_A* 2k7h_A Length = 158

 Score =  147 bits (372), Expect = 3e-46
 Identities = 70/158 (44%), Positives = 99/158 (62%), Gaps = 4/158 (2%)

Query: 1   MGVVTYESEETYAVPPARMFNALASD--NLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIV 58
           MGV T++ E T  + PA+++ AL +D   +  K   + +++VE++EGNGGPG+IKK T +
Sbjct: 1   MGVFTFQDEYTSTIAPAKLYKALVTDADIIIPKA-VETIQSVEIVEGNGGPGTIKKLTFI 59

Query: 59  EGGQVKYAKHKIEEEDKVNLKLKYSVIEGNDLADYKLEKISFEHQWRASPNGGSICKTIC 118
           EGG+ KY  HKIE  D+ NL   YS++ G  L D  +EKISFE +     NGGSI K   
Sbjct: 60  EGGESKYVLHKIEAIDEANLGYNYSIVGGVGLPD-TIEKISFETKLVEGANGGSIGKVTI 118

Query: 119 KLHAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQANPD 156
           K+  KG+ +  EE+ KA K R     K +E+YL A+PD
Sbjct: 119 KIETKGDAQPNEEEGKAAKARGDAFFKAIESYLSAHPD 156

>2flh_A Cytokinin-specific binding protein; zeatin, pathogenesis-related proteins, multiple- ligand binding, plant protein; HET: ZEA; 1.20A {Vigna radiata} PDB: 3c0v_A* Length = 155

 Score =  140 bits (354), Expect = 1e-43
 Identities = 32/155 (20%), Positives = 65/155 (41%), Gaps = 4/155 (2%)

Query: 3   VVTYESEETYAVPPARMFNALASD--NLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEG 60
           V  + ++   +V    ++  L+ D   +  K+ P +VK+V+++EG+GG G+I  F  +  
Sbjct: 2   VKEFNTQTELSVRLEALWAVLSKDFITVVPKVLPHIVKDVQLIEGDGGVGTILIFNFLPE 61

Query: 61  GQVKYAKHKIEEEDKVNLKLKYSVIEGNDLADYKLEKISFEHQWRASPNGGSICKTICKL 120
               Y + +I E D+ + ++   VIEG  L+   L       +        ++       
Sbjct: 62  VSPSYQREEITEFDESSHEIGLQVIEGGYLSQ-GLSYYKTTFKLSEIEEDKTLVNVKISY 120

Query: 121 HAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQANP 155
               ++E      K   +  L  ++ +E YL    
Sbjct: 121 DHDSDIEEKVTPTKT-SQSTLMYLRRLERYLSNGS 154

>1icx_A Protein LLR18A, LLPR10.1A; 7-stranded beta sheet, C-terminal helix, allergen; 1.95A {Lupinus luteus} SCOP: d.129.3.1 PDB: 1ifv_A Length = 155

 Score =  140 bits (354), Expect = 1e-43
 Identities = 61/157 (38%), Positives = 95/157 (60%), Gaps = 5/157 (3%)

Query: 2   GVVTYESEETYAVPPARMFNALA--SDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVE 59
           G+  +E+E++  V PA+++ AL   SD +  K+   + ++VE++EGNGGPG+IKK   + 
Sbjct: 1   GIFAFENEQSSTVAPAKLYKALTKDSDEIVPKVIEPI-QSVEIVEGNGGPGTIKKIIAIH 59

Query: 60  GGQVKYAKHKIEEEDKVNLKLKYSVIEGNDLADYKLEKISFEHQWRASPNGGSICKTICK 119
            G   +  HK++  D+ NL   YS+I G  L +  LEKIS+E +    P+GGSI K   K
Sbjct: 60  DGHTSFVLHKLDAIDEANLTYNYSIIGGEGLDE-SLEKISYESKILPGPDGGSIGKINVK 118

Query: 120 LHAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQANPD 156
            H KG+V ++E      K + LG+ K +E Y+ A+PD
Sbjct: 119 FHTKGDV-LSETVRDQAKFKGLGLFKAIEGYVLAHPD 154

>2vq5_A S-norcoclaurine synthase; lyase, S- norcoclaurine biosynthesis, dopamine, hydroxybenzaldehyde; HET: MSE LDP HBA; 2.09A {Thalictrum flavum} PDB: 2vne_A* Length = 201

 Score =  129 bits (325), Expect = 1e-38
 Identities = 28/159 (17%), Positives = 50/159 (31%), Gaps = 8/159 (5%)

Query: 5   TYESEETYAVPPARMFNALA---SDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGG 61
               E   A     ++   +          + P   + +E+  G+GG G+I   T V G 
Sbjct: 30  VIHHELEVAASADDIWTVYSWPGLAKHLPDLLPGAFEKLEI-IGDGGVGTILDMTFVPGE 88

Query: 62  QVKYAKHKIEEEDKVNLKLKYSVIEGNDLADYKLEKISFEHQWRASPNGGSICKTICKLH 121
                K K    D  +   K  +IEG  L    +           +     + K+  + H
Sbjct: 89  FPHEYKEKFILVDNEHRLKKVQMIEGGYLDL-GVTYYMDTIHVVPTGKDSCVIKSSTEYH 147

Query: 122 AKGE-VEVTEEQAKAGKERVLGVVKGVEAYLQANPDVCN 159
            K E V++ E     G      +   +   +  +    N
Sbjct: 148 VKPEFVKIVEPLITTGPLA--AMADAISKLVLEHKSKSN 184

>2i9y_A Major latex protein-like protein 28 or MLP-like protein 28; AT1G70830, BET V1-like, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} Length = 166

 Score =  111 bits (278), Expect = 6e-32
 Identities = 33/152 (21%), Positives = 61/152 (40%), Gaps = 6/152 (3%)

Query: 5   TYESEETYAVPPARMFNALA-SDNLPSKIFPDVVKNVEVLEGNGG-PGSIKKFTIVEGGQ 62
             E++        +  +  A   +  SK  P  ++  ++ EG+ G  GSI  +  V  G+
Sbjct: 18  KLETDVEIKASADKFHHMFAGKPHHVSKASPGNIQGCDLHEGDWGTVGSIVFWNYVHDGE 77

Query: 63  VKYAKHKIEEEDKVNLKLKYSVIEGNDLADYKLEKISFEHQWRASPNGGSICKTICKLHA 122
            K AK +IE  +     + + VIEG+ + +YK   ++ +         GSI     +   
Sbjct: 78  AKVAKERIEAVEPDKNLITFRVIEGDLMKEYKSFLLTIQVT-PKPGGPGSIVHWHLEYEK 136

Query: 123 KGEVEVTEEQAKAGKERVLGVVKGVEAYLQAN 154
             E     E      +  + V K ++ +L A 
Sbjct: 137 ISEEVAHPETL---LQFCVEVSKEIDEHLLAE 165

>3kl1_A PYL2, putative uncharacterized protein AT2G26040; abscisic acid receptor, crystal, high resolution, PP2C, HORM receptor; 1.55A {Arabidopsis thaliana} PDB: 3kdi_A* 3kdh_A 3nr4_A* 3ns2_A* 3nj0_A* 3nj1_A* 3nmh_A* 3kaz_A 3kb0_A* 3kb3_A* 3ujl_A* 3nmp_A* 3nmt_A* 3nmv_A* Length = 190

 Score = 59.0 bits (142), Expect = 1e-11
 Identities = 16/108 (14%), Positives = 46/108 (42%), Gaps = 2/108 (1%)

Query: 10  ETYAVPPARMFNALASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQVKYAKHK 69
           +    P + ++  +   + P +     VK   ++ G+G  GS+++ T++ G     +  +
Sbjct: 41  QRIHAPASVVWPLIRRFDNPERYKH-FVKRCRLISGDGDVGSVREVTVISGLPASTSTER 99

Query: 70  IEEEDKVNLKLKYSVIEGNDLADYKLEKISFEHQWRASPNGGSICKTI 117
           +E  D  +  L + V+ G +      + ++  +++    +G      +
Sbjct: 100 LEFVDDDHRVLSFRVVGG-EHRLKNYKSVTSVNEFLNQDSGKVYTVVL 146

>3rt2_A Abscisic acid receptor PYL10; ABA-independent PP2C inhibitor, PP2CS, hydrolase inhibitor; 1.50A {Arabidopsis thaliana} PDB: 3r6p_A* 3qtj_A* 3uqh_A 3rt0_C Length = 183

 Score = 41.2 bits (96), Expect = 3e-05
 Identities = 12/79 (15%), Positives = 28/79 (35%), Gaps = 1/79 (1%)

Query: 10  ETYAVPPARMFNALASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQVKYAKHK 69
           +    P   +++ +   + P K  P  +    V       GS+++  +  G     +   
Sbjct: 33  KHIKAPLHLVWSIVRRFDEPQKYKP-FISRCVVQGKKLEVGSVREVDLKSGLPATKSTEV 91

Query: 70  IEEEDKVNLKLKYSVIEGN 88
           +E  D     L   ++ G+
Sbjct: 92  LEILDDNEHILGIRIVGGD 110

>2le1_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, unknown function; NMR {Thermobifida fusca} Length = 151

 Score = 39.8 bits (92), Expect = 7e-05
 Identities = 13/88 (14%), Positives = 30/88 (34%), Gaps = 5/88 (5%)

Query: 1  MGVVTYESEETYAVPPARMFNALASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEG 60
          M  +        A P A ++  +   +   +  P V            PG+ + F     
Sbjct: 1  MATLRRS--VEVAAPAADVWTLVGDFSAIHRWHPQVSAPTLRGASPHTPGAERVFGAGTE 58

Query: 61 GQVKYAKHKIEEEDKVNLKLKYSVIEGN 88
           ++     ++ E D+   +L Y++ +  
Sbjct: 59 EEL---VERLVERDESARRLVYTMPDPP 83

>3k3k_A Abscisic acid receptor PYR1; ABA receptor, plant hormone receptor, A sensor, drought tolerance, plant development; HET: A8S; 1.70A {Arabidopsis thaliana} PDB: 3njo_A* 3qn1_A* 3k90_A* 3jrq_B* 3kdj_A* 3nef_A* 3neg_A* 3nmn_A* 3kay_A* Length = 211

 Score = 40.2 bits (93), Expect = 9e-05
 Identities = 11/80 (13%), Positives = 29/80 (36%), Gaps = 2/80 (2%)

Query: 10  ETYAVPPARMFNALASDNLPSKIFPDVVKNVEVLEG-NGGPGSIKKFTIVEGGQVKYAKH 68
           +    PP  +++ +   + P       +K+  V +      G  +   ++ G     +  
Sbjct: 56  QRIHAPPELVWSIVRRFDKPQTYKH-FIKSCSVEQNFEMRVGCTRDVIVISGLPANTSTE 114

Query: 69  KIEEEDKVNLKLKYSVIEGN 88
           +++  D       +S+I G 
Sbjct: 115 RLDILDDERRVTGFSIIGGE 134

>3jrs_A PYL1, putative uncharacterized protein AT5G46790; plant hormone receptor, abscisic acid, hormone recepto; HET: A8S; 2.05A {Arabidopsis thaliana} Length = 208

 Score = 39.4 bits (91), Expect = 1e-04
 Identities = 8/76 (10%), Positives = 25/76 (32%)

Query: 13  AVPPARMFNALASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQVKYAKHKIEE 72
             PP  +++ +   + P      +       +     G  +   ++ G     ++ +++ 
Sbjct: 63  HAPPETVWSVVRRFDRPQIYKHFIKSCNVSEDFEMRVGCTRDVNVISGLPANTSRERLDL 122

Query: 73  EDKVNLKLKYSVIEGN 88
            D       +S+  G 
Sbjct: 123 LDDDRRVTGFSITGGE 138

>1vjh_A BET V I allergen family; structural genomics, center for eukaryotic structural genomics, protein structure initiative, CESG, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.129.3.1 PDB: 2q3q_A Length = 122

 Score = 36.8 bits (85), Expect = 5e-04
 Identities = 12/96 (12%), Positives = 22/96 (22%), Gaps = 4/96 (4%)

Query: 59  EGGQVKYAKHKIEEEDKVNLKLKYSVIEGNDLADYKLEKISFEHQWRASPNGGSICKTIC 118
                K  K +IE  D V   +   +        +K  K S           GS      
Sbjct: 29  NRPFEKNGKTEIEAVDLVKKTMTIQMSGSEIQKYFKTLKGSI-AVTPIGVGDGSHVVWTF 87

Query: 119 KLHAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQAN 154
                 +            +  +   K ++  +   
Sbjct: 88  HFEKVHKDIDDPHSI---IDESVKYFKKLDEAILNF 120

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	159
3ie5_A	165	Phenolic oxidative coupling protein HYP-1; hyperic	100.0
4a8u_A	159	Major pollen allergen BET V 1-J; PR-10 protein; 1.	100.0
3rws_A	168	MTN13 protein; zeatin, cytokinin, hormone, lucerne	100.0
2vjg_A	154	Major allergen DAU C 1; major carrot allergen, pat	100.0
2wql_A	154	Major allergen DAU C 1; pathogenesis-related prote	100.0
2qim_A	158	PR10.2B; trans-zeatin, cytokinin, plant hormones,	100.0
1e09_A	159	PRU AV 1; allergen, major cherry allergen, pathoge	100.0
1tw0_A	157	Pathogenesis-related class 10 protein SPE-16; seve	100.0
1icx_A	155	Protein LLR18A, LLPR10.1A; 7-stranded beta sheet,	100.0
2flh_A	155	Cytokinin-specific binding protein; zeatin, pathog	100.0
2vq5_A	201	S-norcoclaurine synthase; lyase, S- norcoclaurine	100.0
2i9y_A	166	Major latex protein-like protein 28 or MLP-like pr	100.0
1vjh_A	122	BET V I allergen family; structural genomics, cent	99.96
3kl1_A	190	PYL2, putative uncharacterized protein AT2G26040;	99.96
3rt2_A	183	Abscisic acid receptor PYL10; ABA-independent PP2C	99.96
3jrs_A	208	PYL1, putative uncharacterized protein AT5G46790;	99.96
3oqu_A	205	Abscisic acid receptor PYL9; RCAR1, hormone recept	99.95
3f08_A	146	Uncharacterized protein Q6HG14; NESG Q6HG14_bachk	99.95
3k3k_A	211	Abscisic acid receptor PYR1; ABA receptor, plant h	99.95
3oji_A	189	Abscisic acid receptor PYL3; crystal, PP2C, pyraba	99.94
3p51_A	160	Uncharacterized protein; structural genomics, PSI-	99.94
3qrz_A	223	Abscisic acid receptor PYL5; crystal, hormone rece	99.92
2le1_A	151	Uncharacterized protein; structural genomics, nort	99.92
3tvq_A	169	Multifunctional cyclase-dehydratase-3-O-methyl TR	99.66
3tl1_A	159	WHIE ORF VI, polyketide cyclase; helix-GRIP fold,	99.66
2d4r_A	147	Hypothetical protein TTHA0849; start domain, struc	99.63
3tfz_A	172	Cyclase; helix-GRIP, BET V1-like superfamily, bios	99.61
3ijt_A	155	SMU.440, putative uncharacterized protein; hypothe	99.58
2pcs_A	162	Conserved protein; structural genomics, unknown fu	99.52
3ggn_A	155	Uncharacterized protein DR_A0006; structural genom	99.43
2ns9_A	157	Hypothetical protein APE2225; uncharacterized cons	99.41
1t17_A	148	Conserved hypothetical protein; beta-alpha-beta-BE	99.39
3p9v_A	161	Uncharacterized protein; structural genomics, PSI-	99.22
2leq_A	146	Uncharacterized protein; start domains, structural	99.08
2il5_A	171	Hypothetical protein; structural genomics, APC2365	99.06
1xuv_A	178	Hypothetical protein MM0500; alpha-beta protein, n	99.05
1z94_A	147	Conserved hypothetical protein; NESG, CV1439, stru	99.04
2lcg_A	142	Uncharacterized protein; start domain, structural	99.02
1xn6_A	143	Hypothetical protein BC4709; structural genomics,	98.99
3q6a_A	135	Uncharacterized protein; structural genomics, PSI-	98.89
3rd6_A	161	MLL3558 protein; structural genomics, PSI-biology,	98.86
2l8o_A	144	Uncharacterized protein; mixed alpha-beta protein,	98.86
3put_A	166	Hypothetical conserved protein; structural genomic	98.86
2ldk_A	172	Uncharacterized protein; structural genomics, nort	98.85
3q64_A	162	MLL3774 protein; structural genomics, PSI-biology,	98.83
3pu2_A	164	Uncharacterized protein; SRPBCC superfamily, PSI-b	98.81
2lgh_A	144	Uncharacterized protein; AHSA1, start domain, COG3	98.8
1xfs_A	178	NC_840354, conserved hypothetical protein; structu	98.8
3eli_A	152	AHSA1, AHA1 domain protein; alpha-beta protein, st	98.8
2lak_A	160	AHSA1-like protein RHE_CH02687; NESG, structural g	98.75
3q63_A	151	MLL2253 protein; structural genomics, PSI-biology,	98.71
1xn5_A	146	BH1534 unknown conserved protein; structural genom	98.69
3uid_A	168	Putative uncharacterized protein; SRPBCC superfami	98.68
2lf2_A	175	Uncharacterized protein; NESG, structural genomics	98.64
2kew_A	152	Uncharacterized protein YNDB; start domain, resona	98.58
2l9p_A	164	Uncharacterized protein; structural genomics, nort	98.58
2k5g_A	191	Uncharacterized protein; structural genomiccs, pro	98.56
2nn5_A	184	Hypothetical protein EF_2215; structural genomics,	98.52
3qsz_A	189	STAR-related lipid transfer protein; structural ge	98.31
4fpw_A	181	CALU16; structural genomics, PSI-biology, northeas	98.27
1x53_A	145	Activator of 90 kDa heat shock protein ATPase homo	98.26
3ni8_A	158	PFC0360W protein; heat shock, malaria, ATPase, str	98.24
2luz_A	192	CALU16; structural genomics, northeast structural	98.23
1ln1_A	214	PC-TP, phosphatidylcholine transfer protein; start	98.18
2qpv_A	156	Uncharacterized protein ATU1531; structural genomi	98.17
1zxf_A	155	CALC; SELF-sacrificing resistance protein, structu	97.9
2lio_A	136	Uncharacterized protein; structural genomics, nort	97.58
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	97.56
2ffs_A	157	Hypothetical protein PA1206; 7-stranded beta sheet	96.92
3p0l_A	221	Steroidogenic acute regulatory protein, mitochond;	96.56
1jss_A	224	Stard4, cholesterol-regulated start protein 4; sta	96.35
2e3n_A	255	Lipid-transfer protein CERT; ceramide transfer, li	96.23
1em2_A	229	MLN64 protein; beta barrel, lipid binding protein;	95.66
3fo5_A	258	Thioesterase, adipose associated, isoform BFIT2; o	95.21
2r55_A	231	STAR-related lipid transfer protein 5; alpha and b	93.42
2pso_A	237	STAR-related lipid transfer protein 13; alpha and	93.09

>3ie5_A Phenolic oxidative coupling protein HYP-1; hypericin, ST JOHN'S WORT, depression, allergy, PR-10 protein, cytokinin, plant hormones; HET: PGE PG4 PE8 1PE; 1.69A {Hypericum perforatum} SCOP: d.129.3.0

Probab=100.00  E-value=2.2e-48  Score=291.98  Aligned_cols=156  Identities=34%  Similarity=0.536  Sum_probs=144.8

Q ss_pred             CccEEEEEEEEEcCCHHHHHhh-h-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEecCCceeEEEEEEEEEecccc
Q 031431            1 MGVVTYESEETYAVPPARMFNA-L-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQVKYAKHKIEEEDKVNL   78 (159)
Q Consensus         1 m~~~~~~~e~~i~apa~~vW~~-~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~   78 (159)
                      ||+++++.|++|++||++||++ + ||++++|+|+|++|++|++++|+|++||||.|+|.+|++..++||||+.+|+++|
T Consensus         7 Mg~~~~~~ev~i~a~a~kvw~~~v~d~~~l~pk~~P~~v~s~e~~eGdg~~Gsir~~~~~~g~~~~~~kErl~~iD~~~~   86 (165)
T 3ie5_A            7 MAAYTIVKEEESPIAPHRLFKALVLERHQVLVKAQPHVFKSGEIIEGDGGVGTVTKITFVDGHPLTYMLHKFDEIDAANF   86 (165)
T ss_dssp             CSCEEEEEEEEESSCHHHHHHHHTTTHHHHHHHHCTTTEEEEEEEESSSSTTCEEEEEECTTSSCCEEEEEEEEEEGGGT
T ss_pred             eeeEEEEEEEEecCCHHHHHHHhcCCccccchhhCCcccceEEEecCCCCCCeEEEEEecCCCCCceEEEEEEEEchhcC
Confidence            9999999999999999999999 5 9999779999999999999999999999999999999888899999999999999


Q ss_pred             eEEEEEEeccccC-CCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHHHhHHHHHHHHHHHHHHHHhhCCCC
Q 031431           79 KLKYSVIEGNDLA-DYKLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQANPDV  157 (159)
Q Consensus        79 ~~~y~v~eg~~l~-~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~~~~~~~~~~~~k~le~~l~~~~~~  157 (159)
                      +++|+++||+++. .|++|++++++  + .++|+|+++|+++|++.++..++|+.+++.++.+.+|+|+||+||++|||+
T Consensus        87 ~~~Y~iieG~~l~~~~~~y~~~i~v--~-~~~ggs~vkwt~~y~~~~~~~~~~e~~k~~~~~~~~~~K~ie~yllanp~~  163 (165)
T 3ie5_A           87 YCKYTLFEGDVLRDNIEKVVYEVKL--E-AVGGGSKGKITVTYHPKPGCTVNEEEVKIGEKKAYEFYKQVEEYLAANPEV  163 (165)
T ss_dssp             EEEEEEEEEGGGTTTEEEEEEEEEE--E-EETTEEEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHCTTT
T ss_pred             EEEEEEecCCCCccceEEEEEEEEE--E-eCCCceEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhChhh
Confidence            9999999999874 57887776655  5 446789999999999999988888888888999999999999999999999


Q ss_pred             CC
Q 031431          158 CN  159 (159)
Q Consensus       158 y~  159 (159)
                      ||
T Consensus       164 ~~  165 (165)
T 3ie5_A          164 FA  165 (165)
T ss_dssp             TC
T ss_pred             hC
Confidence            97

>4a8u_A Major pollen allergen BET V 1-J; PR-10 protein; 1.16A {Betula pendula} PDB: 4a8v_A* 4a87_A* 4a81_A* 4a80_A* 4a83_A* 4a86_A* 4a85_A* 4a88_A 4a8g_A* 1b6f_A 1btv_A 1bv1_A 1fsk_A 4a84_A* 1llt_A 1fm4_A* 3k78_A 1qmr_A

Probab=100.00  E-value=1.2e-47  Score=286.51  Aligned_cols=156  Identities=46%  Similarity=0.696  Sum_probs=143.3

Q ss_pred             ccEEEEEEEEEcCCHHHHHhhh--cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEecCCceeEEEEEEEEEecccce
Q 031431            2 GVVTYESEETYAVPPARMFNAL--ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQVKYAKHKIEEEDKVNLK   79 (159)
Q Consensus         2 ~~~~~~~e~~i~apa~~vW~~~--d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~   79 (159)
                      |+.+++.|++|++||++||+++  ||++++|+|+|++|++|++++|+|++||||.|+|.+|++..++||||+.+|+++|+
T Consensus         1 ~~~~~~~ei~i~a~a~kvw~~~~~d~~~l~pk~~P~~i~s~e~~eGdgg~Gsir~~~~~~g~~~~~~kErl~~iD~~~~~   80 (159)
T 4a8u_A            1 GVFNYETEATSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPEGFPFKYVKDRVDEVDHTNFK   80 (159)
T ss_dssp             CEEEEEEEEEESSCHHHHHHHHTTTHHHHHHHHCTTTCCEEEEEECSSSTTCEEEEECCTTSSCSEEEEEEEEEETTTTE
T ss_pred             CcEEEEEEEEecCCHHHHHHHHhcCccccchhhCchhccEEEEEcCCCCCceEEEEEEecCCCccEEEEEEEEEccccCE
Confidence            6889999999999999999997  99998899999999999999999999999999999998888999999999999999


Q ss_pred             EEEEEEeccccCC-CceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHHHhHHHHHHHHHHHHHHHHhhCCCCC
Q 031431           80 LKYSVIEGNDLAD-YKLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQANPDVC  158 (159)
Q Consensus        80 ~~y~v~eg~~l~~-Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~~~~~~~~~~~~k~le~~l~~~~~~y  158 (159)
                      ++|+++||+++.. |++|++++  +|+|.++|+|+++|+++|++.++..++|+.+++.++++.+|+|+||+||++|||+|
T Consensus        81 ~~y~iiegd~l~~~~~~y~~ti--~v~p~~~ggs~v~wt~~y~~~~~~~~~~~~~k~~~~~~~~~~k~ie~yll~np~~~  158 (159)
T 4a8u_A           81 YSYSVIEGGPVGDTLEKISNEI--KIVATPNGGSILKINNKYHTKGDHEVKAEQIKASKEMGETLLRAVESYLLAHSDAY  158 (159)
T ss_dssp             EEEEEEEETTCBTTEEEEEEEE--EEEECTTSCEEEEEEEEEEESSSCCC-CHHHHHHHHHHHHHHHHHHHHHHHCTTTT
T ss_pred             EEEEEeeCCCCccceEEEEEEE--EEEECCCCceEEEEEEEEEECCCCcCCHHHHHHHHHHHHHHHHHHHHHHhhChhhh
Confidence            9999999998753 67766654  66898888999999999999998877777778788999999999999999999999


Q ss_pred             C
Q 031431          159 N  159 (159)
Q Consensus       159 ~  159 (159)
                      |
T Consensus       159 ~  159 (159)
T 4a8u_A          159 N  159 (159)
T ss_dssp             C
T ss_pred             C
Confidence            7

>2wql_A Major allergen DAU C 1; pathogenesis-related protein, plant defense; HET: P4C; 2.70A {Daucus carota} PDB: 2bk0_A

Probab=100.00  E-value=1.8e-45  Score=273.39  Aligned_cols=151  Identities=29%  Similarity=0.432  Sum_probs=138.1

Q ss_pred             CccEEEEEEEEEcCCHHHHHhhh--cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEecCCceeEEEEEEEEEecccc
Q 031431            1 MGVVTYESEETYAVPPARMFNAL--ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQVKYAKHKIEEEDKVNL   78 (159)
Q Consensus         1 m~~~~~~~e~~i~apa~~vW~~~--d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~   78 (159)
                      ||+++++.|+++++||+|+|+++  |+++++|+|+|+++++++ ++|+|++|+||.|+|..|++..++||||+.+|+++|
T Consensus         1 mgv~~~~~E~~~~v~a~kl~ka~v~d~~~l~Pk~~P~~iks~~-veGdg~~Gsir~~t~~~g~~~~~~kErle~iD~~~~   79 (154)
T 2wql_A            1 MGAQSHSLEITSSVSAEKIFSGIVLDVDTVIPKAATGAYKSVE-VKGDGGAGTVRIITLPEGSPITTMTVRTDAVNKEAL   79 (154)
T ss_dssp             --CCEEEEEEEESSCHHHHHHHHTTTHHHHHHHHSTTTCSEEE-EESSSSTTCEEEEECCTTCSCCEEEEEEEEEETTTT
T ss_pred             CCCeEEEEEEEecCCHHHHHHHHhhcccccchhhcccceeEEE-EECCCCCCeEEEEEEcCCCCceEEEEEEEEEehhhC
Confidence            99999999999999999999876  999989999999999999 699999999999999999888999999999999999


Q ss_pred             eEEEEEEeccccC-CCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHHHhHHHHHHHHHHHHHHHHhhC
Q 031431           79 KLKYSVIEGNDLA-DYKLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQAN  154 (159)
Q Consensus        79 ~~~y~v~eg~~l~-~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~~~~~~~~~~~~k~le~~l~~~  154 (159)
                      +++|+++||+++. .|++|++  ++++.|.++|+|+++|+++|++.+++.++|+.++.+++.+.+|+|++|+||++|
T Consensus        80 ~~~y~iieGd~l~~~~~~~~~--~ikv~p~~~ggsvvk~t~~Y~~~~~~~~~ee~~~~~~~~~~~~~KaiEayLlan  154 (154)
T 2wql_A           80 SYDSTVIDGDILLGFIESIET--HMVVVPTADGGSITKTTAIFHTKGDAVVPEENIKFADAQNTALFKAIEAYLIAN  154 (154)
T ss_dssp             EEEEEEEESGGGTTTEEEEEE--EEEEEECTTSCEEEEEEEEEEESTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             EEEEEEEeccccccceEEEEE--EEEEeeCCCCcEEEEEEEEEEECCCCCCCHHHHHHHHHHHHhHHHHHHHHHhcC
Confidence            9999999999854 4666655  556799999999999999999999999999998888899999999999999998

>2qim_A PR10.2B; trans-zeatin, cytokinin, plant hormones, plant protein, PR-1 protein, pathogenesis-related protein, allergen; HET: ZEA; 1.35A {Lupinus luteus} PDB: 3e85_A* 1xdf_A* 2k7h_A

Probab=100.00  E-value=2.7e-44  Score=267.70  Aligned_cols=155  Identities=41%  Similarity=0.682  Sum_probs=141.3

Q ss_pred             CccEEEEEEEEEcCCHHHHHhhh--cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEecCCceeEEEEEEEEEecccc
Q 031431            1 MGVVTYESEETYAVPPARMFNAL--ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQVKYAKHKIEEEDKVNL   78 (159)
Q Consensus         1 m~~~~~~~e~~i~apa~~vW~~~--d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~   78 (159)
                      ||+++++.+++|++||++||+++  ||++++|+|+| .|++|++++|+|++||||.|+|.+|.+..++||||+.+|+++|
T Consensus         1 M~~~~~~~e~~i~a~a~kvw~~~~~d~~~~~pk~~~-~i~s~~i~eGdgg~Gsir~~~~~~g~~~~~~kErl~~~D~~~~   79 (158)
T 2qim_A            1 MGVFTFQDEYTSTIAPAKLYKALVTDADIIIPKAVE-TIQSVEIVEGNGGPGTIKKLTFIEGGESKYVLHKIEAIDEANL   79 (158)
T ss_dssp             -CEEEEEEEEEESSCHHHHHHHHTTTHHHHHHHHCT-TEEEEEEEESSSSTTCEEEEEEEETTEEEEEEEEEEEEEGGGT
T ss_pred             CCCEEEEEEEEecCCHHHHHHHHhcCccchhhhHHh-hCcEEEEEecCCCCCeEEEEEEcCCCcceeEEEEEEEEecCCC
Confidence            99999999999999999999997  88887899995 7999999999999999999999988777899999999999999


Q ss_pred             eEEEEEEeccccC-CCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHHHhHHHHHHHHHHHHHHHHhhCCCC
Q 031431           79 KLKYSVIEGNDLA-DYKLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQANPDV  157 (159)
Q Consensus        79 ~~~y~v~eg~~l~-~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~~~~~~~~~~~~k~le~~l~~~~~~  157 (159)
                      +++|+++||++++ .|++|++++  +|+|.++|||+++|+++|++.++..++|+.++..++.+.+|+|+||+||++||| 
T Consensus        80 ~~~y~iieG~~~~~~~~~~~~~~--~v~~~~~~gs~v~wt~~y~~~~~~~~~~~~~~~~~~~~~~~~k~ie~yll~~p~-  156 (158)
T 2qim_A           80 GYNYSIVGGVGLPDTIEKISFET--KLVEGANGGSIGKVTIKIETKGDAQPNEEEGKAAKARGDAFFKAIESYLSAHPD-  156 (158)
T ss_dssp             EEEEEEEEESSCCCSEEEEEEEE--EEEECSTTCEEEEEEEEEEESTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHCSS-
T ss_pred             EEEEEEEeccCCccceEEEEEEE--EEEecCCCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCcC-
Confidence            9999999999876 477766655  569988778999999999999888888888877889999999999999999999 


Q ss_pred             CC
Q 031431          158 CN  159 (159)
Q Consensus       158 y~  159 (159)
                      ||
T Consensus       157 ~~  158 (158)
T 2qim_A          157 YN  158 (158)
T ss_dssp             CC
T ss_pred             cC
Confidence            97

>1e09_A PRU AV 1; allergen, major cherry allergen, pathogenesis-related protein, heteronuclear structure; NMR {Prunus avium} SCOP: d.129.3.1 PDB: 1h2o_A 2lpx_A

Probab=100.00  E-value=1.7e-44  Score=269.08  Aligned_cols=156  Identities=48%  Similarity=0.776  Sum_probs=142.1

Q ss_pred             ccEEEEEEEEEcCCHHHHHhhh--cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEecCCceeEEEEEEEEEecccce
Q 031431            2 GVVTYESEETYAVPPARMFNAL--ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQVKYAKHKIEEEDKVNLK   79 (159)
Q Consensus         2 ~~~~~~~e~~i~apa~~vW~~~--d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~   79 (159)
                      |+++++.+++|++||++||+++  ||++++|+|+|+.|++|++++|+|++||||.|+|.+|.+..+++|||+.+|+++|+
T Consensus         1 ~~~~~~~e~~i~ap~~~vw~~~~~d~~~~~pk~~P~~i~s~~~~eGdgg~Gsvr~~~~~~G~~~~~~kErl~~~D~~~~~   80 (159)
T 1e09_A            1 GVFTYESEFTSEIPPPRLFKAFVLDADNLVPKIAPQAIKHSEILEGDGGPGTIKKITFGEGSQYGYVKHKIDSIDKENYS   80 (159)
T ss_dssp             CEEEEEEEEEESSCHHHHHHHHTTTHHHHHHHHCTTTEEEEEEEESSSSTTCEEEEEECCSSSCEEEEEEEEEEETTTTE
T ss_pred             CcEEEEEEEEecCCHHHHHHHHhcCccccchhhChhhccEEEEEeCCCCCceEEEEEecCCCCceEEEEEEEEEcCCCCE
Confidence            6899999999999999999997  88887899999889999999999999999999999876668999999999999999


Q ss_pred             EEEEEEeccccC-CCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHHHhHHHHHHHHHHHHHHHHhhCCCCC
Q 031431           80 LKYSVIEGNDLA-DYKLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQANPDVC  158 (159)
Q Consensus        80 ~~y~v~eg~~l~-~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~~~~~~~~~~~~k~le~~l~~~~~~y  158 (159)
                      ++|+++||+++. .|++|+++  ++|.|.++|||+++|+++|++.++..++|+.++.+++.+.+|+|+||+||++|||+|
T Consensus        81 ~~y~iieG~~~~~~~~~~~~~--~~v~~~~~~gs~v~wt~~y~~~~~~~~~~~~~~~~~~~~~~~~k~ie~yll~~~~~~  158 (159)
T 1e09_A           81 YSYTLIEGDALGDTLEKISYE--TKLVASPSGGSIIKSTSHYHTKGNVEIKEEHVKAGKEKASNLFKLIETYLKGHPDAY  158 (159)
T ss_dssp             EEEEECCCTTTGGGEEEEEEE--EEECCCTTSSEEEEEEEEEEECSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHCTTSC
T ss_pred             EEEEEEecccCcccceEEEEE--EEEEecCCCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhChhhc
Confidence            999999999866 36666655  466898778899999999999988778888777788999999999999999999999


Q ss_pred             C
Q 031431          159 N  159 (159)
Q Consensus       159 ~  159 (159)
                      |
T Consensus       159 ~  159 (159)
T 1e09_A          159 N  159 (159)
T ss_dssp             C
T ss_pred             C
Confidence            7

>1tw0_A Pathogenesis-related class 10 protein SPE-16; seven antiparallel beta-sheet, plant protein; 2.20A {Pachyrhizus erosus} SCOP: d.129.3.1 PDB: 1txc_A*

Probab=100.00  E-value=2.5e-43  Score=262.38  Aligned_cols=154  Identities=32%  Similarity=0.569  Sum_probs=141.2

Q ss_pred             ccEEEEEEEEEcCCHHHHHhhh--cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEecCCceeEEEEEEEEEecccce
Q 031431            2 GVVTYESEETYAVPPARMFNAL--ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQVKYAKHKIEEEDKVNLK   79 (159)
Q Consensus         2 ~~~~~~~e~~i~apa~~vW~~~--d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~   79 (159)
                      |+++++.+++|++||++||+++  ||++++|+|+| .|++|++++|+|++||||.|+|.+|.+..++||||+.+|+++|+
T Consensus         1 ~~~~~~~e~~i~a~a~kvw~~~~~d~~~~~pk~~~-~i~s~~i~eG~g~~Gsir~~~~~~G~~~~~~kErl~~~D~~~~~   79 (157)
T 1tw0_A            1 GVFVFRDETSSSVAPAKLYKALTKDSDTIAQKIDG-PIQSIELVEGNGGVGTIKKITANEGDKTSFVLQKVDAIDEANLG   79 (157)
T ss_dssp             CEEEEEEEEEESSCHHHHHHHHHHTGGGGGGGSCS-SEEEEEEEESSSSTTCEEEEEEEETTEEEEEEEEEEEEETTTTE
T ss_pred             CcEEEEEEEEecCCHHHHHHHHhcCcchhhhhHHh-hccEEEEEeCCCCCCeEEEEEeeCCCccceEEEEEEEEeccCCE
Confidence            6899999999999999999997  99988999995 79999999999999999999999887778999999999999999


Q ss_pred             EEEEEEeccccC-CCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHHHhHHHHHHHHHHHHHHHHhhCCCCC
Q 031431           80 LKYSVIEGNDLA-DYKLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQANPDVC  158 (159)
Q Consensus        80 ~~y~v~eg~~l~-~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~~~~~~~~~~~~k~le~~l~~~~~~y  158 (159)
                      ++|+++||++++ .|++|++++  +|+|.++|||+++|+++|++.++..++|+.++..++.+.+|+|+||+||++|||+|
T Consensus        80 ~~y~iieGd~~~~~~~~~~~~~--~v~~~~~~gs~v~w~~~y~~~~~~~~~~~~~~~~~~~~~~~~k~ie~yll~~p~~~  157 (157)
T 1tw0_A           80 YDYSIVGGTGLPESLEKLSFET--KVVAGSGGGSISKVTLKFHTKGDAPLSDAVRDDALAKGAGFFKAIEGYVLANPAEY  157 (157)
T ss_dssp             EEEEEEECTTSCTTEEEEEEEE--EEEECSSSSEEEEEEEEEEESTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGC
T ss_pred             EEEEEEecCCCccceEEEEEEE--EEEecCCCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCcccC
Confidence            999999999876 477776655  56998777899999999999988878888887788999999999999999999998

>1icx_A Protein LLR18A, LLPR10.1A; 7-stranded beta sheet, C-terminal helix, allergen; 1.95A {Lupinus luteus} SCOP: d.129.3.1 PDB: 1ifv_A

Probab=100.00  E-value=2.9e-42  Score=256.03  Aligned_cols=152  Identities=36%  Similarity=0.674  Sum_probs=138.3

Q ss_pred             ccEEEEEEEEEcCCHHHHHhhh--cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEecCCceeEEEEEEEEEecccce
Q 031431            2 GVVTYESEETYAVPPARMFNAL--ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQVKYAKHKIEEEDKVNLK   79 (159)
Q Consensus         2 ~~~~~~~e~~i~apa~~vW~~~--d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~   79 (159)
                      |+++++.+++|++||++||+++  ||++++|+|+| .|++|++++|+|++||||.|+|.+|.+..++||||+.+|+++|+
T Consensus         1 ~~~~~~~e~~i~a~a~kvw~~~~~d~~~~~pk~~~-~i~s~~i~eG~g~~Gsir~~~~~~G~~~~~~kErl~~~D~~~~~   79 (155)
T 1icx_A            1 GIFAFENEQSSTVAPAKLYKALTKDSDEIVPKVIE-PIQSVEIVEGNGGPGTIKKIIAIHDGHTSFVLHKLDAIDEANLT   79 (155)
T ss_dssp             CEEEEEEEEEESSCHHHHHHHHTTTHHHHHHHHST-TEEEEEEEESSSSTTCEEEEEEESSSSEEEEEEEEEEEEGGGTE
T ss_pred             CcEEEEEEEEecCCHHHHHHHHhcCcchhcchhhh-hccEEEEEecCCCCCeEEEEEEecCCcceeEEEEEEEEeccCCE
Confidence            6899999999999999999997  88887899995 79999999999999999999999887778999999999999999


Q ss_pred             EEEEEEeccccC-CCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHHHhHHHHHHHHHHHHHHHHhhCCCC
Q 031431           80 LKYSVIEGNDLA-DYKLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQANPDV  157 (159)
Q Consensus        80 ~~y~v~eg~~l~-~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~~~~~~~~~~~~k~le~~l~~~~~~  157 (159)
                      ++|+++||++++ .|++|++++  +|+|.++|||+++|+++|++.++. ++|+.++..++.+.+|+|+||+||++|||+
T Consensus        80 ~~y~iieGd~~~~~~~~~~~~~--~v~~~~~~gs~v~w~~~y~~~~~~-~~~~~~~~~~~~~~~~~k~ie~yll~~p~~  155 (155)
T 1icx_A           80 YNYSIIGGEGLDESLEKISYES--KILPGPDGGSIGKINVKFHTKGDV-LSETVRDQAKFKGLGLFKAIEGYVLAHPDY  155 (155)
T ss_dssp             EEEEEEEETTSCTTEEEEEEEE--EEEECGGGCEEEEEEEEEEESSSS-CCHHHHTTHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             EEEEEEecCCCccceEEEEEEE--EEEecCCCCEEEEEEEEEEECCCC-CCHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            999999999876 477776655  568987778999999999999888 888777777889999999999999999986

>2flh_A Cytokinin-specific binding protein; zeatin, pathogenesis-related proteins, multiple- ligand binding, plant protein; HET: ZEA; 1.20A {Vigna radiata} PDB: 3c0v_A*

Probab=100.00  E-value=2.6e-42  Score=256.51  Aligned_cols=148  Identities=21%  Similarity=0.379  Sum_probs=124.9

Q ss_pred             CccEEEEEEEEEcCCHHHHHhh-h-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEecC-CceeEEEEEEEEEeccc
Q 031431            1 MGVVTYESEETYAVPPARMFNA-L-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEG-GQVKYAKHKIEEEDKVN   77 (159)
Q Consensus         1 m~~~~~~~e~~i~apa~~vW~~-~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g-~~~~~~kErl~~~D~~~   77 (159)
                      || ++++.+++|+|||++||++ + ||++++|+|+|+++++|++++|+|++||||.|+|.+| .+ .++||||+.+|+++
T Consensus         1 M~-~~~~~e~~i~a~a~kvw~~~v~d~~~l~pk~~P~~i~s~~~~eGdgg~Gsvr~~~~~~g~~~-~~~kErl~~iD~~~   78 (155)
T 2flh_A            1 MV-KEFNTQTELSVRLEALWAVLSKDFITVVPKVLPHIVKDVQLIEGDGGVGTILIFNFLPEVSP-SYQREEITEFDESS   78 (155)
T ss_dssp             CC-EEEEEEEEESSCHHHHHHHHHTSCTTHHHHHCTTTEEEEEEEECSSSTTCEEEEEECTTSSS-CEEEEEEEEEETTT
T ss_pred             CC-cEEEEEEEecCCHHHHHHHHhcccccccchhccccceEEEEEcCCCCCCeEEEEEeeCCCCC-cEEEEEEEEEeCCC
Confidence            99 9999999999999999999 6 9999779999999999999999999999999999988 66 89999999999999


Q ss_pred             ceEEEEEEeccccC-CCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHHHhHH--HHHHHHHHHHHHHHhhC
Q 031431           78 LKLKYSVIEGNDLA-DYKLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAKAGK--ERVLGVVKGVEAYLQAN  154 (159)
Q Consensus        78 ~~~~y~v~eg~~l~-~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~~~~~--~~~~~~~k~le~~l~~~  154 (159)
                      |+++|+++||+++. .|++|++++  +|+|.++|+|+++|+++|++.++..+.+   +..+  +.+.+|+|+||+||++|
T Consensus        79 ~~~~y~iieg~~l~~~~~~~~~~i--~v~p~~~ggs~v~wt~~y~~~~~~~~~~---~~~~~~~~~~~~~k~ie~yll~~  153 (155)
T 2flh_A           79 HEIGLQVIEGGYLSQGLSYYKTTF--KLSEIEEDKTLVNVKISYDHDSDIEEKV---TPTKTSQSTLMYLRRLERYLSNG  153 (155)
T ss_dssp             TEEEEEEEEEGGGGTTCSEEEEEE--EEEEEETTEEEEEEEEEEEC-------C---CHHHHHHHHHHHHHHHHHHHC--
T ss_pred             CEEEEEEEeccccccCceEEEEEE--EEEECCCCCEEEEEEEEEEECCCCccCh---hHhhhHHHHHHHHHHHHHHHhhC
Confidence            99999999999853 467777655  5688877889999999999988765522   2345  78999999999999998


Q ss_pred             C
Q 031431          155 P  155 (159)
Q Consensus       155 ~  155 (159)
                      |
T Consensus       154 ~  154 (155)
T 2flh_A          154 S  154 (155)
T ss_dssp             -
T ss_pred             C
Confidence            7

>2vq5_A S-norcoclaurine synthase; lyase, S- norcoclaurine biosynthesis, dopamine, hydroxybenzaldehyde; HET: MSE LDP HBA; 2.09A {Thalictrum flavum} PDB: 2vne_A*

Probab=100.00  E-value=3.8e-40  Score=253.95  Aligned_cols=151  Identities=17%  Similarity=0.228  Sum_probs=131.7

Q ss_pred             Ccc-EEEEEEEEEcCCHHHHHhhh---cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEecCCceeEEEEEEEEEecc
Q 031431            1 MGV-VTYESEETYAVPPARMFNAL---ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQVKYAKHKIEEEDKV   76 (159)
Q Consensus         1 m~~-~~~~~e~~i~apa~~vW~~~---d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~~~~kErl~~~D~~   76 (159)
                      |++ ++++.+++|+|||++||+++   ||++++|+|+|+++++|+++ |+|++||||.|+|.+|++..++||||+.+|++
T Consensus        25 ~~~~g~~~~eveI~apa~kvW~~~v~~df~~l~pk~~P~~i~s~e~~-GdGg~GsIR~lt~~~G~~~~~vkErle~iDde  103 (201)
T 2vq5_A           25 STVTKVIHHELEVAASADDIWTVYSWPGLAKHLPDLLPGAFEKLEII-GDGGVGTILDMTFVPGEFPHEYKEKFILVDNE  103 (201)
T ss_dssp             CCEEEEEEEEEEESSCHHHHHHHHTCGGGGGGHHHHSTTSCSEEEEE-SSSSTTCEEEEECCTTCSSCEEEEEEEEEETT
T ss_pred             cccceEEEEEEEecCCHHHHHhhhhcCCcccchhhhCcccceEEEEe-cCCCCCeEEEEEecCCCcccEEEEEEEEEchh
Confidence            454 88999999999999999995   69997799999999999999 99999999999999987778999999999999


Q ss_pred             cceEEEEEEeccccC-CCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCC-CCCHHHHHhHHHHHHHHHHHHHHHHhhC
Q 031431           77 NLKLKYSVIEGNDLA-DYKLEKISFEHQWRASPNGGSICKTICKLHAKGEV-EVTEEQAKAGKERVLGVVKGVEAYLQAN  154 (159)
Q Consensus        77 ~~~~~y~v~eg~~l~-~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~-~~~~~~~~~~~~~~~~~~k~le~~l~~~  154 (159)
                      +|+++|+++||+++. .|++|++++  +|+|.++|||+++|+++|++.++. +++++.  .+++.+.+|+|+||+||++|
T Consensus       104 ~~~~sYsiieGd~l~~~~~~y~~ti--kv~p~~dggs~vkWt~~ye~~~~~~~~~e~~--~~~~~~~~~~KaiE~yLlan  179 (201)
T 2vq5_A          104 HRLKKVQMIEGGYLDLGVTYYMDTI--HVVPTGKDSCVIKSSTEYHVKPEFVKIVEPL--ITTGPLAAMADAISKLVLEH  179 (201)
T ss_dssp             TTEEEEEEEEEGGGGTTEEEEEEEE--EEEEEETTEEEEEEEEEEEECGGGHHHHTTT--CCSHHHHHHHHHHHHHHHSC
T ss_pred             hCEEEEEEEecCccccceeEEEEEE--EEEECCCCCeEEEEEEEEEECCCCCCCChhH--HHHHHHHHHHHHHHHHHHhC
Confidence            999999999999863 477776655  568887889999999999998775 332222  35679999999999999999


Q ss_pred             CC
Q 031431          155 PD  156 (159)
Q Consensus       155 ~~  156 (159)
                      |+
T Consensus       180 p~  181 (201)
T 2vq5_A          180 KS  181 (201)
T ss_dssp             CC
T ss_pred             cc
Confidence            97

>2i9y_A Major latex protein-like protein 28 or MLP-like protein 28; AT1G70830, BET V1-like, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}

Probab=100.00  E-value=2.1e-39  Score=243.30  Aligned_cols=149  Identities=23%  Similarity=0.308  Sum_probs=129.9

Q ss_pred             Ccc-EEEEEEEEEcCCHHHHHhhh--cCCCCcccccCCceeEEEEEcCC-CCCCcEEEEEEecCCceeEEEEEEEEEecc
Q 031431            1 MGV-VTYESEETYAVPPARMFNAL--ASDNLPSKIFPDVVKNVEVLEGN-GGPGSIKKFTIVEGGQVKYAKHKIEEEDKV   76 (159)
Q Consensus         1 m~~-~~~~~e~~i~apa~~vW~~~--d~~~~lp~~~P~~v~s~~~~eG~-g~~GsvR~~~~~~g~~~~~~kErl~~~D~~   76 (159)
                      |+. ++++.+++|+|||++||+++  |+.. +|+|+|+.|++|++++|+ |++||||.|+|..|++..++||||+.+|++
T Consensus        13 ~~~~~k~~~ev~i~apa~kvw~~~~~d~~~-lpk~~P~~i~s~~~~eGd~gg~Gsir~~~~~~gg~~~~~kErl~~iD~~   91 (166)
T 2i9y_A           13 SSLVGKLETDVEIKASADKFHHMFAGKPHH-VSKASPGNIQGCDLHEGDWGTVGSIVFWNYVHDGEAKVAKERIEAVEPD   91 (166)
T ss_dssp             SSSEEEEEEEEEESSCHHHHHGGGSSCSSC-CCCSCSSCCSSCCCCSCCSCSTTCCCEEEEEETTEEEEEEEEEEEEETT
T ss_pred             cCCccEEEEEEEecCCHHHHHHHHhccccc-ccccccccceEEEEEcCCCCCCCeEEEEEEecCCCceEEEEEEEEEecc
Confidence            555 89999999999999999996  6654 899999889999999999 999999999999998888999999999999


Q ss_pred             cceEEEEEEeccccCCCceeEEEEEEEEEECCC-CCeEEEEEEEEEEcCCCCCCHHHHHhHHHHHHHHHHHHHHHHhhCC
Q 031431           77 NLKLKYSVIEGNDLADYKLEKISFEHQWRASPN-GGSICKTICKLHAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQANP  155 (159)
Q Consensus        77 ~~~~~y~v~eg~~l~~Y~~~~~~~~~~~~p~~~-g~t~v~W~~~~e~~~~~~~~~~~~~~~~~~~~~~~k~le~~l~~~~  155 (159)
                      +++++|+++||+++..|++|.+++  +|+|.++ +||+|+|+++|++.++..++++.+   ++++..|+|+||+||++||
T Consensus        92 ~~~~~y~iieGd~~~~~~~~~~ti--~v~p~~~g~gs~v~wt~~ye~~~~~~~~p~~~---~~~~~~~~k~ie~~l~~~~  166 (166)
T 2i9y_A           92 KNLITFRVIEGDLMKEYKSFLLTI--QVTPKPGGPGSIVHWHLEYEKISEEVAHPETL---LQFCVEVSKEIDEHLLAEE  166 (166)
T ss_dssp             TTEEEEEECCTTGGGTEEEEEEEE--EEEEEEETTEEEEEEEEEEEESSTTTCCTHHH---HHHHHHHHHHHHHHHHSCC
T ss_pred             CcEEEEEEEeCCCCCCeeEEEEEE--EEEECCCCCCcEEEEEEEEEECCCCCCCHHHH---HHHHHHHHHHHHHHHhhCC
Confidence            999999999999866678777665  5588754 389999999999987754544433   3699999999999999986

>1vjh_A BET V I allergen family; structural genomics, center for eukaryotic structural genomics, protein structure initiative, CESG, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.129.3.1 PDB: 2q3q_A

Probab=99.96  E-value=1.2e-28  Score=176.23  Aligned_cols=119  Identities=12%  Similarity=0.037  Sum_probs=97.7

Q ss_pred             Ccc-EEEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEecCCceeEEEEEEEEEecccc
Q 031431            1 MGV-VTYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQVKYAKHKIEEEDKVNL   78 (159)
Q Consensus         1 m~~-~~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~   78 (159)
                      |++ ++++.+++|++||+++|+++ ++ +++| |.+                 +       |.   .   |++++|++++
T Consensus         1 m~~~g~~~~e~~i~~~a~k~w~~~~~~-~~~p-~g~-----------------~-------G~---~---~ie~iD~~~~   48 (122)
T 1vjh_A            1 STLKGALSVKFDVKCPADKFFSAFVED-TNRP-FEK-----------------N-------GK---T---EIEAVDLVKK   48 (122)
T ss_dssp             CCSEEEEEEEEEESSCHHHHHHHHHHH-TTSC-SST-----------------T-------CE---E---EEEEEETTTT
T ss_pred             CCCCcEEEEEEEecCCHHHHHHHHhhc-ccCC-ccC-----------------C-------Cc---c---EEEEEecccC
Confidence            887 99999999999999999999 87 5687 533                 1       21   1   9999999999


Q ss_pred             eEEEEEEeccccCCCceeEEEEEEEEEECC-CCCeEEEEEEEEEEcCCCCCCHHHHHhHHHHHHHHHHHHHHHHhhCCC
Q 031431           79 KLKYSVIEGNDLADYKLEKISFEHQWRASP-NGGSICKTICKLHAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQANPD  156 (159)
Q Consensus        79 ~~~y~v~eg~~l~~Y~~~~~~~~~~~~p~~-~g~t~v~W~~~~e~~~~~~~~~~~~~~~~~~~~~~~k~le~~l~~~~~  156 (159)
                      +++|+++||+++..|++|++++  +|+|.+ ++||+++|+++|++.++..++|+.++   +.+.+|+|+||+||++|||
T Consensus        49 ~~~y~iieGd~~~~~~~~~~~~--~v~~~~~~~gs~vkwt~~ye~~~~~~~~p~~~~---~~~~~~~k~ie~yll~~p~  122 (122)
T 1vjh_A           49 TMTIQMSGSEIQKYFKTLKGSI--AVTPIGVGDGSHVVWTFHFEKVHKDIDDPHSII---DESVKYFKKLDEAILNFKE  122 (122)
T ss_dssp             EEEEEEECTTGGGTEEEEEEEE--EEEECSSSSCEEEEEEEEEEESSTTSCCSHHHH---HHHHHHHHHHHHHHHHC--
T ss_pred             EEEEEEEEccccccEEEEEEEE--EEEEecCCCCeEEEEEEEEEECCCCCCCHHHHH---HHHHHHHHHHHHHHhhCCC
Confidence            9999999999876667766655  668985 56899999999999887655555543   6999999999999999996

>3kl1_A PYL2, putative uncharacterized protein AT2G26040; abscisic acid receptor, crystal, high resolution, PP2C, HORM receptor; 1.55A {Arabidopsis thaliana} PDB: 3kdi_A* 3kdh_A 3nr4_A* 3ns2_A* 3nj0_A* 3nj1_A* 3nmh_A* 3kaz_A 3kb0_A* 3kb3_A* 3ujl_A* 3nmp_A* 3nmt_A* 3nmv_A*

Probab=99.96  E-value=1.3e-27  Score=182.70  Aligned_cols=116  Identities=18%  Similarity=0.284  Sum_probs=96.8

Q ss_pred             EEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEecCCceeEEEEEEEEEecccceEEEEE
Q 031431            6 YESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQVKYAKHKIEEEDKVNLKLKYSV   84 (159)
Q Consensus         6 ~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~y~v   84 (159)
                      .....+|+|||++||+++ ||++ ++.|.| .|++|++++|+|++|+||.|+|.+|++..++||||+.+|+++|+|+|++
T Consensus        37 ~~~~~~I~Apa~~vW~lv~df~~-~~~w~p-~I~s~e~~eGdg~vGsVR~~t~~~G~p~~~vkErL~~iD~~~~~~sY~i  114 (190)
T 3kl1_A           37 SLITQRIHAPASVVWPLIRRFDN-PERYKH-FVKRCRLISGDGDVGSVREVTVISGLPASTSTERLEFVDDDHRVLSFRV  114 (190)
T ss_dssp             EEEEEEESSCHHHHHHHHHCTTC-GGGTCS-SEEEEEEEESSSSTTCEEEEEECSSSSCEEEEEEEEEEETTTTEEEEEE
T ss_pred             EEEEEEecCCHHHHHHHHhCCCC-hhHccc-ccCEEEEEcCCCCCCeEEEEEecCCCccceEEEEEEEEeccCCEEEEEE
Confidence            344569999999999999 9998 455666 6999999999999999999999999888899999999999999999999


Q ss_pred             Eeccc-cCCCceeEEEEEEEEEE--CCCCCeEEEEEEEEEEcCC
Q 031431           85 IEGND-LADYKLEKISFEHQWRA--SPNGGSICKTICKLHAKGE  125 (159)
Q Consensus        85 ~eg~~-l~~Y~~~~~~~~~~~~p--~~~g~t~v~W~~~~e~~~~  125 (159)
                      ++|++ +.+|+++....  ++++  .++++|+|+|+++|++..+
T Consensus       115 ieG~~~~~~Y~s~~~v~--~~~~~~~~~~gt~V~Ws~~f~~p~g  156 (190)
T 3kl1_A          115 VGGEHRLKNYKSVTSVN--EFLNQDSGKVYTVVLESYTVDIPEG  156 (190)
T ss_dssp             EEESSSCCSCEEEEEEE--EEEC-CCCCEEEEEEEEEEEECCTT
T ss_pred             EecCCccccEEEEEEEE--ecccccCCCCcEEEEEEEEEEcCCC
Confidence            99998 67777643332  3344  3456899999999996544

>3rt2_A Abscisic acid receptor PYL10; ABA-independent PP2C inhibitor, PP2CS, hydrolase inhibitor; 1.50A {Arabidopsis thaliana} PDB: 3r6p_A* 3qtj_A* 3uqh_A 3rt0_C

Probab=99.96  E-value=5.1e-28  Score=183.91  Aligned_cols=115  Identities=15%  Similarity=0.223  Sum_probs=97.8

Q ss_pred             EEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcC-CCCCCcEEEEEEecCCceeEEEEEEEEEecccceEEE
Q 031431            5 TYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEG-NGGPGSIKKFTIVEGGQVKYAKHKIEEEDKVNLKLKY   82 (159)
Q Consensus         5 ~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG-~g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~y   82 (159)
                      +.....+|+|||++||+++ ||++ +++|+| .|++| .++| +|++|+||.|+|.+|.+..+++|||+.+|+++|+++|
T Consensus        28 ~~~v~~~I~Apa~~VW~~v~df~~-l~~w~P-~V~s~-~~eG~~ggvGsvR~lt~~~G~p~~~vkErL~~~D~~~~~~sY  104 (183)
T 3rt2_A           28 SSTLVKHIKAPLHLVWSIVRRFDE-PQKYKP-FISRC-VVQGKKLEVGSVREVDLKSGLPATKSTEVLEILDDNEHILGI  104 (183)
T ss_dssp             EEEEEEEESSCHHHHHHHHTCTTC-GGGTCT-TEEEE-EESSSCCCTTCEEEEEECCSSTTCEEEEEEEEEETTTTEEEE
T ss_pred             EEEEEEEEeCCHHHHHHHHhCcCc-hhhcCc-cceEE-EeeCCCCCCCcEEEEEeCCCCccceEEEEEEEEECCCCEEEE
Confidence            4456679999999999999 9999 699999 49999 6799 6899999999999886667999999999999999999


Q ss_pred             EEEeccccCCCceeEEEEEEEEEECC-CC--CeEEEEEEEEEEcCCC
Q 031431           83 SVIEGNDLADYKLEKISFEHQWRASP-NG--GSICKTICKLHAKGEV  126 (159)
Q Consensus        83 ~v~eg~~l~~Y~~~~~~~~~~~~p~~-~g--~t~v~W~~~~e~~~~~  126 (159)
                      +|++|++.  |+.|.+++  +|.|.+ +|  +|.|+|+++|++.+++
T Consensus       105 ~Iieg~lp--~~~y~ati--~v~p~~~dG~~gt~V~Ws~~fd~~~g~  147 (183)
T 3rt2_A          105 RIVGGDHR--LKNYSSTI--SLHSETIDGKTGTLAIESFVVDVPEGN  147 (183)
T ss_dssp             EEEEESCS--CTTCEEEE--EEEEEEETTEEEEEEEEEEEEECCTTC
T ss_pred             EEecCCcc--eeEEEEEE--EEEEecCCCCCCEEEEEEEEEEcCCCC
Confidence            99999761  35555655  558876 55  6999999999986654

>3jrs_A PYL1, putative uncharacterized protein AT5G46790; plant hormone receptor, abscisic acid, hormone recepto; HET: A8S; 2.05A {Arabidopsis thaliana}

Probab=99.96  E-value=4.2e-28  Score=187.44  Aligned_cols=111  Identities=14%  Similarity=0.179  Sum_probs=92.6

Q ss_pred             EEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCC-CCCCcEEEEEEecCCceeEEEEEEEEEecccceEEE
Q 031431            5 TYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGN-GGPGSIKKFTIVEGGQVKYAKHKIEEEDKVNLKLKY   82 (159)
Q Consensus         5 ~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~-g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~y   82 (159)
                      ......+|+|||++||+++ ||++ +|+|+| .|++|++++|+ |++|+||.|+|.+|.+..+++|||+.+|+++|+|+|
T Consensus        55 ~~~v~~~I~ApadkVW~lv~Df~~-l~~w~p-~V~s~e~~eGd~g~vGsVR~lt~~~G~p~~~vkErL~~lDde~~~~sY  132 (208)
T 3jrs_A           55 SSLLAQRIHAPPETVWSVVRRFDR-PQIYKH-FIKSCNVSEDFEMRVGCTRDVNVISGLPANTSRERLDLLDDDRRVTGF  132 (208)
T ss_dssp             EEEEEEEESSCHHHHHHHHTCTTC-GGGTCT-TEEEEECCTTCCCSTTCEEEEEECTTSSCCEEEEEEEEEETTTTEEEE
T ss_pred             eEEEEEEEeCCHHHHHHHHhCcCC-hhHccc-cceEEEEecCCCCCCCeEEEEEecCCCccceEEEEEEEEeccCCEEEE
Confidence            3445569999999999999 9999 699999 59999999997 689999999999998778999999999999999999


Q ss_pred             EEEeccc-cCCCceeEEEEEEEEEECC-CCCeEEEEEEEEEE
Q 031431           83 SVIEGND-LADYKLEKISFEHQWRASP-NGGSICKTICKLHA  122 (159)
Q Consensus        83 ~v~eg~~-l~~Y~~~~~~~~~~~~p~~-~g~t~v~W~~~~e~  122 (159)
                      +|++|++ +.+|+   +++  +|.|.+ +++|.++|+++|++
T Consensus       133 sIieG~lpv~~Y~---sti--~V~p~~~g~~t~V~Wt~~fes  169 (208)
T 3jrs_A          133 SITGGEHRLRNYK---SVT--TVHRFEKEEEEERIWTVVLES  169 (208)
T ss_dssp             EEEESSSSCTTCE---EEE--EEEEEEC-----CEEEEEEEE
T ss_pred             EEeeCCcceeeEE---EEE--EEEEccCCCccEEEEEEEEEE
Confidence            9999986 65654   444  568854 35899999999985

>3oqu_A Abscisic acid receptor PYL9; RCAR1, hormone receptor; HET: A8S; 2.68A {Arabidopsis thaliana}

Probab=99.95  E-value=9.9e-27  Score=179.31  Aligned_cols=117  Identities=16%  Similarity=0.189  Sum_probs=100.6

Q ss_pred             cEEEEEEE--EEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEecCCceeEEEEEEEEEecccce
Q 031431            3 VVTYESEE--TYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQVKYAKHKIEEEDKVNLK   79 (159)
Q Consensus         3 ~~~~~~e~--~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~   79 (159)
                      ..+++.++  +|+|||++||+++ ||++ +++|+| .|++|+ ++|+|++|+||.|+|.+|.+..+++|||+.+|+++|+
T Consensus        49 ~~k~~~~V~~~I~ApadkVW~lV~Df~~-l~kW~P-~V~s~e-veGdg~vGsVR~vt~~~G~p~~~vkErL~~lDde~~~  125 (205)
T 3oqu_A           49 ENQCTSALVKHIKAPLHLVWSLVRRFDQ-PQKYKP-FVSRCT-VIGDPEIGSLREVNVKSGLPATTSTERLELLDDEEHI  125 (205)
T ss_dssp             TTEEEEEEEEEESSCHHHHHHHHTCTTC-GGGTCT-TEEEEE-CCSSCCTTCEEEEEECTTSSCSEEEEEEEEEETTTTE
T ss_pred             CcEEEEEEeeEEcCCHHHHHHHHhCcCC-hhHcCc-cceEEE-eeCCCCCCcEEEEEEcCCCccceEEEEEEEEECCCCE
Confidence            36788899  9999999999999 9999 789999 699998 4899999999999999887778999999999999999


Q ss_pred             EEEEEEeccccCCCceeEEEEEEEEEECC-CC--CeEEEEEEEEEEcCCC
Q 031431           80 LKYSVIEGNDLADYKLEKISFEHQWRASP-NG--GSICKTICKLHAKGEV  126 (159)
Q Consensus        80 ~~y~v~eg~~l~~Y~~~~~~~~~~~~p~~-~g--~t~v~W~~~~e~~~~~  126 (159)
                      |+|+|++|++.  |+.|.+++  +|.|.+ +|  +|++.|++.+++.+++
T Consensus       126 ~sYsIieG~lp--v~~Y~ati--~V~p~~~dG~~~T~v~ws~~~D~p~g~  171 (205)
T 3oqu_A          126 LGIKIIGGDHR--LKNYSSIL--TVHPEIIEGRAGTMVIESFVVDVPQGN  171 (205)
T ss_dssp             EEEEEEEESSS--CTTCEEEE--EEEEECCCC-CEEEEEEEEEEECCTTC
T ss_pred             EEEEEEecCcc--eeEEEEEE--EEEEccCCCCceEEEEEEEeccCCCCC
Confidence            99999999762  35565655  568877 34  6899999999876554

>3f08_A Uncharacterized protein Q6HG14; NESG Q6HG14_bachk Q6HG14 BUR153, structural genomics, PSI-2; 2.20A {Bacillus thuringiensis serovar konkukiorganism_taxid} SCOP: d.129.3.8 PDB: 3cnw_A

Probab=99.95  E-value=2.5e-26  Score=168.39  Aligned_cols=131  Identities=10%  Similarity=0.109  Sum_probs=103.3

Q ss_pred             EEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEecCCceeEEEEEEEEEecccceEEEE
Q 031431            5 TYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQVKYAKHKIEEEDKVNLKLKYS   83 (159)
Q Consensus         5 ~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~y~   83 (159)
                      +++.+++|+|||++||+++ ||.+ +|+|+|. +++|++++|    |++|.+++.+|+   +++|||+.+|+++++++|+
T Consensus         3 ~v~~si~I~Ap~~~VW~~l~d~~~-~~~w~p~-v~~~~~~~G----G~vR~~~~~~G~---~~~Erl~~~D~~~~~~~y~   73 (146)
T 3f08_A            3 HTTTSMEIFGSTEQVWQLIGGFNS-LPDWLPY-IPSSKLTEG----GRVRHLANPDGE---TIIERLEVFNDKERYYTYS   73 (146)
T ss_dssp             EEEEEEEESSCHHHHHHHHCSTTC-HHHHCTT-CCEEEEEGG----GTEEEEECTTSC---EEEEEEEEEETTTTEEEEE
T ss_pred             EEEEEEEEeCCHHHHHHHHhcccc-HHHhCCC-eEEEEEeCC----CeEEEEEeCCCC---EEEEEEEEEeCCCCEEEEE
Confidence            5899999999999999999 9999 7999995 899998876    899999998774   8999999999999999999


Q ss_pred             EEeccccCCCceeEEEEEEEEEE-CCCCCeEEEEEEEEEEcCCCCCCHHHHH-hHHHHHHHHHHHHHHHH
Q 031431           84 VIEGNDLADYKLEKISFEHQWRA-SPNGGSICKTICKLHAKGEVEVTEEQAK-AGKERVLGVVKGVEAYL  151 (159)
Q Consensus        84 v~eg~~l~~Y~~~~~~~~~~~~p-~~~g~t~v~W~~~~e~~~~~~~~~~~~~-~~~~~~~~~~k~le~~l  151 (159)
                      +++|++ + ++.|.++  ++|.| .+++||.++|+++|+|.+.   .++.++ .....+..-++.|.+.+
T Consensus        74 iv~g~~-~-~~~~~~~--~~v~p~~~~~gt~v~w~~~~~p~g~---~~~~~~~~~~~~~~~~L~~Lk~~~  136 (146)
T 3f08_A           74 IMNAPF-P-VTNYLST--IQVKEGTESNTSLVEWSGTFTPVAV---SDEEAINLVHGIYSDGLKALQHAF  136 (146)
T ss_dssp             EEECSS-S-EEEEEEE--EEEEECSSTTCEEEEEEEEEEESSS---CHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             EecCCC-c-eeEEEEE--EEEEEecCCCcEEEEEEEEEEeCCC---CHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999965 2 3565554  46689 5677999999999998432   233333 33334455556665544

>3k3k_A Abscisic acid receptor PYR1; ABA receptor, plant hormone receptor, A sensor, drought tolerance, plant development; HET: A8S; 1.70A {Arabidopsis thaliana} PDB: 3njo_A* 3qn1_A* 3k90_A* 3zvu_A* 3jrq_B* 3kdj_A* 3nef_A* 3neg_A* 3nmn_A* 3kay_A*

Probab=99.95  E-value=2.2e-26  Score=178.04  Aligned_cols=109  Identities=14%  Similarity=0.150  Sum_probs=94.2

Q ss_pred             EEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCC-CCCCcEEEEEEecCCceeEEEEEEEEEecccceEEE
Q 031431            5 TYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGN-GGPGSIKKFTIVEGGQVKYAKHKIEEEDKVNLKLKY   82 (159)
Q Consensus         5 ~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~-g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~y   82 (159)
                      ......+|+|||++||+++ ||++ +++|+| .|++|++++|+ |++|+||.|++.+|.+..+++|||+.+|+++|+|+|
T Consensus        51 ~~~v~~~I~ApadkVW~lv~dF~~-l~~w~p-~V~s~e~~eGd~g~vGsVR~lt~~~G~p~~~vkErL~~lDd~~~~~sY  128 (211)
T 3k3k_A           51 SSLHAQRIHAPPELVWSIVRRFDK-PQTYKH-FIKSCSVEQNFEMRVGCTRDVIVISGLPANTSTERLDILDDERRVTGF  128 (211)
T ss_dssp             EEEEEEEESSCHHHHHHHHTCTTC-GGGTCS-SEEEEECCTTCCCCTTCEEEEEESSSSSCEEEEEEEEEEETTTTEEEE
T ss_pred             eEEEEEEEcCCHHHHHHHHhCcCC-hhHcCc-cceEEEEecCCCCCCCcEEEEEecCCCccceEEEEEEEEeccCCEEEE
Confidence            3445569999999999999 9998 799999 59999999997 589999999999998778999999999999999999


Q ss_pred             EEEeccc-cCCCceeEEEEEEEEEECCCCCeEEEEEEEEEE
Q 031431           83 SVIEGND-LADYKLEKISFEHQWRASPNGGSICKTICKLHA  122 (159)
Q Consensus        83 ~v~eg~~-l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~  122 (159)
                      +|++|++ +   +.|.+++  +|.|.++|+  ++|+++|+.
T Consensus       129 sIieg~lpv---~~Y~sti--~V~p~~~gg--V~Wt~~fes  162 (211)
T 3k3k_A          129 SIIGGEHRL---TNYKSVT--TVHRFEKEN--RIWTVVLES  162 (211)
T ss_dssp             EEEEETTGG---GTCEEEE--EEEEEEETT--EEEEEEEEE
T ss_pred             EEeecCcce---eEEEEEE--EEEECCCCC--EEEEEEEEE
Confidence            9999986 4   4444555  568887665  999999985

>3oji_A Abscisic acid receptor PYL3; crystal, PP2C, pyrabactin, HOR receptor; HET: PYV; 1.84A {Arabidopsis thaliana} PDB: 4ds8_A* 3klx_A* 4dsb_A* 4dsc_A*

Probab=99.94  E-value=1.6e-25  Score=170.36  Aligned_cols=117  Identities=18%  Similarity=0.206  Sum_probs=92.7

Q ss_pred             EEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEc-CCCC----CCcEEEEEEecCCceeEEEEEEEEEecccc
Q 031431            5 TYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLE-GNGG----PGSIKKFTIVEGGQVKYAKHKIEEEDKVNL   78 (159)
Q Consensus         5 ~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~e-G~g~----~GsvR~~~~~~g~~~~~~kErl~~~D~~~~   78 (159)
                      +-....+|+|||++||+++ ||++ ++.|+| +|++|++++ |+|+    +|+||.|+|.+|.+..+++|||+.+|+++|
T Consensus        31 ~s~~~~~I~Ap~d~VWalVrdF~~-p~~w~p-~V~s~~~~e~Gdg~~~~~vGsVR~ltl~~G~P~~~i~ErL~~lDde~~  108 (189)
T 3oji_A           31 TSLIAHRVDAPAHAIWRFVRDFAN-PNKYKH-FIKSCTIRVNGNGIKEIKVGTIREVSVVSGLPASTSVEILEVLDEEKR  108 (189)
T ss_dssp             EEEEEEEESSCHHHHHHHHSCTTC-GGGTCT-TEEEEEECCC----CCCSTTCEEEEEECSSSSBSEEEEEEEEEETTTT
T ss_pred             ceeEEEEEcCCHHHHHHHHhCCCC-hhhCcc-ccceEEEEecCCCCccCCCCcEEEEEecCCCcCceEEEEEEEEeccCC
Confidence            3456779999999999999 9998 789999 599999887 8876    999999999998777799999999999999


Q ss_pred             eEEEEEEeccc-cCCCceeEEEEEEEEEEC-CCC-----CeEEEEEEEEEEcCCC
Q 031431           79 KLKYSVIEGND-LADYKLEKISFEHQWRAS-PNG-----GSICKTICKLHAKGEV  126 (159)
Q Consensus        79 ~~~y~v~eg~~-l~~Y~~~~~~~~~~~~p~-~~g-----~t~v~W~~~~e~~~~~  126 (159)
                      +++|+|++|++ +.+|+   +++++...+. ++|     +|++.|++.+++..++
T Consensus       109 ~~sY~Iieg~~pv~nY~---StitV~~~~~~~~G~~~~~~T~v~es~~~D~P~g~  160 (189)
T 3oji_A          109 ILSFRVLGGEHRLNNYR---SVTSVNEFVVLEKDKKKRVYSVVLESYIVDIPQGN  160 (189)
T ss_dssp             EEEEEEEECSBSSCSCE---EEEEEEEEEEECTTSCEEEEEEEEEEEEEECCTTS
T ss_pred             EEEEEEEecCCccccEE---EEEEEEeccccCCCccccCcEEEEEeEecCCCCCC
Confidence            99999999986 66665   4555433322 123     6899999999875543

>3p51_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 2.06A {Nitrosospira multiformis}

Probab=99.94  E-value=2.1e-25  Score=166.05  Aligned_cols=133  Identities=11%  Similarity=0.133  Sum_probs=104.5

Q ss_pred             EEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCC--CCCcEEEEEEecCCceeEEEEEEEEEecccceEE
Q 031431            5 TYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNG--GPGSIKKFTIVEGGQVKYAKHKIEEEDKVNLKLK   81 (159)
Q Consensus         5 ~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g--~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~   81 (159)
                      +++.+++|+|||++||+++ ||.+ + +|+|.++++|++++|+|  ++|+||.+    |+   +++|||+.+|+++++++
T Consensus         3 ~v~~si~I~Ap~~~VW~~v~Df~~-~-~w~P~v~~s~e~~eg~~~~~vGsvR~~----gg---~v~Erl~~~D~~~~~~s   73 (160)
T 3p51_A            3 KVYNSIVVDAPVERVWSRIRNFHD-F-SWAPSLIKSCKKVGGGGGYSVGARRLL----NG---EFLDTLIAYSEIERRIM   73 (160)
T ss_dssp             EEEEEEEESSCHHHHHHHHCCTTC-C-TTCTTTCCCEEEESSCCTTCTTCEEEE----TT---TEEEEEEEEETTTTEEE
T ss_pred             EEEEEEEECCCHHHHHHHHhCcCC-C-eEccCceEEEEEEecCCCCCCCCEEEE----CC---EEEEEEEEEcCCCcEEE
Confidence            5899999999999999999 9999 5 99998777779999974  79999998    33   78999999999999999


Q ss_pred             EEEEeccccC---CCceeEEEEEEEEEECC-CCCeEEEEEEEEEEcCCCCCCHHHHHhHHHHHHHHHHHHHHHHhh
Q 031431           82 YSVIEGNDLA---DYKLEKISFEHQWRASP-NGGSICKTICKLHAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQA  153 (159)
Q Consensus        82 y~v~eg~~l~---~Y~~~~~~~~~~~~p~~-~g~t~v~W~~~~e~~~~~~~~~~~~~~~~~~~~~~~k~le~~l~~  153 (159)
                      |++++|++..   .|+.|.+++  +|.|.+ +++|.|+|+++|++.++     ...+.....+...++.|.+.+.+
T Consensus        74 Y~ii~g~l~~~~~~~~~y~~~~--~v~p~~~~ggt~V~w~~~~~~~~~-----~~~~~~~~~~~~~L~~Lk~~~e~  142 (160)
T 3p51_A           74 YSMDEGPSPVSSGEIYNYVGNL--HLLPVTIDDTTFVEWSGSWESAST-----EAVEYMNTVYRSLLADLAAEFTS  142 (160)
T ss_dssp             EEEEECSTTSSTTTEEEEEEEE--EEEEETTTTEEEEEEEEEEEESCS-----HHHHHHHHHHHHHHHHHHHHSCT
T ss_pred             EEEecCCCcccccceeEEEEEE--EEEEecCCCCEEEEEEEEEEeCHH-----HHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999996521   256666655  568886 67899999999999752     22222234556666666665544

>2le1_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, unknown function; NMR {Thermobifida fusca}

Probab=99.92  E-value=6.5e-24  Score=154.84  Aligned_cols=138  Identities=11%  Similarity=0.085  Sum_probs=104.8

Q ss_pred             EEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCC-CCCCcEEEEEEecCCceeEEEEEEEEEecccceEEE
Q 031431            5 TYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGN-GGPGSIKKFTIVEGGQVKYAKHKIEEEDKVNLKLKY   82 (159)
Q Consensus         5 ~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~-g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~y   82 (159)
                      +++.+++|+|||++||+++ |+.+ +|+|+|. ++++++++|+ +++|++|.+++..|+   +++|+|+.+|+++++++|
T Consensus         3 ~v~~si~I~ap~e~Vw~~l~d~~~-~~~w~p~-v~~~~~~~g~~~~~G~~r~~~~~~G~---~~~e~i~~~d~~~~~~~~   77 (151)
T 2le1_A            3 TLRRSVEVAAPAADVWTLVGDFSA-IHRWHPQ-VSAPTLRGASPHTPGAERVFGAGTEE---ELVERLVERDESARRLVY   77 (151)
T ss_dssp             EEEEEEEESSCHHHHHHHHTTSGG-GGGTCTT-CCCEEEESSCTTSTTCEEEESSSSSS---CEEEEEEEEETTTTEEEE
T ss_pred             eEEEEEEecCCHHHHHHHHhCcCc-HHHhcCC-ceEEEEECCCCCCCCeEEEEEeCCCC---EEEEEEEEEeCCCCEEEE
Confidence            7999999999999999999 9998 7999997 8999998887 689999999987664   799999999999999999


Q ss_pred             EEEeccccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEc-CCCCCCHHHHHhHHHHHHHHHHHHHHHHhh
Q 031431           83 SVIEGNDLADYKLEKISFEHQWRASPNGGSICKTICKLHAK-GEVEVTEEQAKAGKERVLGVVKGVEAYLQA  153 (159)
Q Consensus        83 ~v~eg~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~-~~~~~~~~~~~~~~~~~~~~~k~le~~l~~  153 (159)
                      ++++|+. + +..+.+  +++|.|.++++|.++|+++|++. .+  .....++........-++.|.+++.+
T Consensus        78 ~~~~g~~-~-~~~~~~--~~~l~~~~~~gt~v~w~~~f~~~p~~--~~~~~~~~~~~~~~~~L~~Lk~~~e~  143 (151)
T 2le1_A           78 TMPDPPF-P-ITNHRA--VLEVVPRDDRHCTVVWTAMFDCSPET--ARELESVIGDGVFAVGLNALAERYGR  143 (151)
T ss_dssp             EEEECSS-S-EEEEEE--EEEEEESSSSCEEEEEEEEEEECHHH--HHHHHHHTTTTHHHHHHHHHHHHTTT
T ss_pred             EEecCCC-C-ceeEEE--EEEEEECCCCcEEEEEEEEEEecCCC--CCHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            9999864 1 244444  45678865678999999999982 11  11111111122445556666655443

>3tvq_A Multifunctional cyclase-dehydratase-3-O-methyl TR TCMN; tetracenomycin, aromatase, taxifolin, dihyroquercet helix-GRIP fold; HET: DQH; 1.67A {Streptomyces glaucescens} PDB: 2rer_A 2res_A 2rez_A

Probab=99.66  E-value=3.7e-15  Score=111.45  Aligned_cols=136  Identities=10%  Similarity=0.177  Sum_probs=93.0

Q ss_pred             cEEEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEE-EE--Ee-cCCceeEEEEEEEEEeccc
Q 031431            3 VVTYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKK-FT--IV-EGGQVKYAKHKIEEEDKVN   77 (159)
Q Consensus         3 ~~~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~-~~--~~-~g~~~~~~kErl~~~D~~~   77 (159)
                      ...++.++.|++||++||+++ |+.+ +|.|+|. +.+++++++++.  .+|. +.  .. .|....+..++  .+|++.
T Consensus         2 a~~v~~si~I~a~~~~v~~lv~Dv~~-~p~w~p~-~~~~~~~~~~~~--~~~~~l~~~~~~~G~~~~~ts~~--~~d~~~   75 (169)
T 3tvq_A            2 AARTDNSIVVNAPFELVWDVTNDIEA-WPELFSE-YAEAEILRQDGD--GFDFRLKTRPDANGRVWEWVSHR--VPDKGS   75 (169)
T ss_dssp             CEEEEEEEEESSCHHHHHHHHTCGGG-HHHHCTT-EEEEEEEEEETT--EEEEEEEECCCTTSCCCEEEEEE--EEEGGG
T ss_pred             CCeEEEEEEecCCHHHHHHHHHhhhH-HHHHHhh-eeEEEEEecCCC--EEEEEEEEEecCCCeEEEEEEEE--EEcCCC
Confidence            357899999999999999999 9998 8999997 888888877642  3332 33  22 33223444454  478999


Q ss_pred             ceEEEEEEeccccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHHH-hHHHHHHHHHHHHHHH
Q 031431           78 LKLKYSVIEGNDLADYKLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAK-AGKERVLGVVKGVEAY  150 (159)
Q Consensus        78 ~~~~y~v~eg~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~~-~~~~~~~~~~k~le~~  150 (159)
                      ++++|+.++++++   +.+..  +++|+|.++| |.|+|..+|+..++.+.+...++ +........+..|-+.
T Consensus        76 ~~I~~~~l~~gPf---~~~~g--~W~f~p~~~g-t~V~~~~df~~~~~~p~~~~~~~~av~~~~~~~L~~LK~~  143 (169)
T 3tvq_A           76 RTVRAHRVETGPF---AYMNL--HWTYRAVAGG-TEMRWVQEFDMKPGAPFDNAHMTAHLNTTTRANMERIKKI  143 (169)
T ss_dssp             TEEEEEESSCTTE---EEEEE--EEEEEEETTE-EEEEEEEEEEECTTCSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cEEEEEEcCCCCh---hheee--EEEEEECCCC-EEEEEEEEEEecCCCcccHHHHHHHHHhhHHHHHHHHHHH
Confidence            9999987644354   33444  5567898776 99999999999876555555444 3333334455554443

>3tl1_A WHIE ORF VI, polyketide cyclase; helix-GRIP fold, polyketide C9-C14 aromatase/cyclase, linear beta-ketone intermediate; HET: JRO; 1.80A {Streptomyces coelicolor} PDB: 3tvr_A 2kf2_A

Probab=99.66  E-value=9.5e-15  Score=108.19  Aligned_cols=134  Identities=14%  Similarity=0.190  Sum_probs=92.5

Q ss_pred             EEEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEE--Eec-CCceeEEEEEEEEEecccce
Q 031431            4 VTYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFT--IVE-GGQVKYAKHKIEEEDKVNLK   79 (159)
Q Consensus         4 ~~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~--~~~-g~~~~~~kErl~~~D~~~~~   79 (159)
                      .+++.++.|++||++||+++ |+.+ +|.|+|. +.++++++++|..-.+| ++  ... |....+..++  .+|++.++
T Consensus         3 ~~v~~si~I~a~~~~V~~lV~Dve~-yP~~~p~-~~~~~vl~~~~~~~~~r-l~~~~~~~G~~~~~ts~~--~~d~~~~~   77 (159)
T 3tl1_A            3 GHTDNEITIAAPMELVWNMTNDIEK-WPGLFSE-YASVEVLGRDDDKVTFR-LTMHPDADGKVWSWVSER--VADPVTRT   77 (159)
T ss_dssp             SEEEEEEEESSCHHHHHHHHTCGGG-HHHHCSS-EEEEEEEEECSSEEEEE-EEECCCTTSCCCEEEEEE--EEETTTTE
T ss_pred             CeeEEEEEecCCHHHHHHHHHhHHH-hhhhhhC-ceEEEEEecCCCEEEEE-EEEEeccCceEEEEEEEE--EEcCCCCE
Confidence            36899999999999999999 9998 8999997 88889888775433334 33  333 3333444443  58999999


Q ss_pred             EEEEEE-eccccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHHH-hHHHHHHHHHHHHHH
Q 031431           80 LKYSVI-EGNDLADYKLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAK-AGKERVLGVVKGVEA  149 (159)
Q Consensus        80 ~~y~v~-eg~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~~-~~~~~~~~~~k~le~  149 (159)
                      ++|+++ +| ++   +.+..  +++|+|.++ ||.|+|..+|+..++.+.+.+.+. +........+..|-+
T Consensus        78 I~~~~~~~g-Pf---~~l~g--~W~f~p~~~-gt~V~~~~df~~~~~~p~~~~~~~~~~~~~~~~~L~~lK~  142 (159)
T 3tl1_A           78 VRAQRVETG-PF---QYMNI--VWEYAETAE-GTVMRWTQDFAMKPDAPVDDAWMTDNINRNSRTQMALIRD  142 (159)
T ss_dssp             EEEEESSCT-TE---EEEEE--EEEEEEETT-EEEEEEEEEEEECTTCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEccCC-Ch---hhccC--EEEEEECCC-CEEEEEEEEEEecCCCCCCHHHHHHHHHhhHHHHHHHHHH
Confidence            999987 55 43   44444  445688766 699999999999876555544333 333333444444443

>2d4r_A Hypothetical protein TTHA0849; start domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.40A {Thermus thermophilus} SCOP: d.129.3.6

Probab=99.63  E-value=8.5e-14  Score=98.07  Aligned_cols=139  Identities=17%  Similarity=0.186  Sum_probs=95.0

Q ss_pred             EEEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEecCCceeEEEEEEEEEecccceEEE
Q 031431            4 VTYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQVKYAKHKIEEEDKVNLKLKY   82 (159)
Q Consensus         4 ~~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~y   82 (159)
                      .+++.+++|+||+++||+++ |+.+ +|+|+|. +.+++++++++ .|....+++..++.......++. .+++++++.|
T Consensus         2 ~~~~~~~~i~ap~~~V~~~l~d~~~-~~~w~p~-~~~~~~~~~~~-~g~~~~~~~~~~g~~~~~~~~~~-~~~~~~~i~~   77 (147)
T 2d4r_A            2 PEVRAERYIPAPPERVYRLAKDLEG-LKPYLKE-VESLEVVAREG-ARTRSRWVAVAMGKKVRWLEEEE-WDDENLRNRF   77 (147)
T ss_dssp             CEEEEEEEESSCHHHHHHHHHCHHH-HGGGCTT-EEEEEEEEEET-TEEEEEEEEEETTEEEEEEEEEE-EETTTTEEEE
T ss_pred             CeEEEEEEeCCCHHHHHHHHhChhh-hhhhccc-ccEEEEEEeCC-CccEEEEEEEeCCceEEEEEEEE-EcCCCcEEEE
Confidence            36889999999999999999 9998 8999997 78888776542 25666666654432233445544 4567778999


Q ss_pred             EEEeccccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCC--CCHHHHH-hHHHHHHHHHHHHHHHHhh
Q 031431           83 SVIEGNDLADYKLEKISFEHQWRASPNGGSICKTICKLHAKGEVE--VTEEQAK-AGKERVLGVVKGVEAYLQA  153 (159)
Q Consensus        83 ~v~eg~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~--~~~~~~~-~~~~~~~~~~k~le~~l~~  153 (159)
                      +..+|++    +.+..  +++|+|.++| |.++|+.+|++.+...  .-...++ ...+....+++.|.+++.+
T Consensus        78 ~~~~g~~----~~~~~--~~~~~~~~~g-T~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~e~  144 (147)
T 2d4r_A           78 FSPEGDF----DRYEG--TWVFLPEGEG-TRVVLTLTYELTIPIFGGLLRKLVQKLMQENVESLLKGLEERVLA  144 (147)
T ss_dssp             EEEEESC----SEEEE--EEEEEECSSS-EEEEEEEEEECCCTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EeccCCh----hheEE--EEEEEECCCC-cEEEEEEEEecCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9988864    23333  4566888665 9999999999865321  1121222 2335667777777777654

>3tfz_A Cyclase; helix-GRIP, BET V1-like superfamily, biosynthetic protein; HET: CXS; 2.39A {Streptomyces SP}

Probab=99.61  E-value=7.2e-14  Score=103.95  Aligned_cols=114  Identities=16%  Similarity=0.175  Sum_probs=82.1

Q ss_pred             cEEEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEecCCceeEEEEEEEEEecccceEE
Q 031431            3 VVTYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQVKYAKHKIEEEDKVNLKLK   81 (159)
Q Consensus         3 ~~~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~   81 (159)
                      +.+++.++.|++||++||+++ |+.+ +|+|+|. +.++++++++++ +..-.+....++.......+ ..+|++.+.+.
T Consensus         4 M~~v~~si~I~ap~~~V~~~v~D~~~-~p~~~P~-~~~~~v~~~~~~-~~~~~~~~~~~G~~~~~~s~-~~~~~~~~~i~   79 (172)
T 3tfz_A            4 MRHVEHTVTVAAPADLVWEVLADVLG-YADIFPP-TEKVEILEEGQG-YQVVRLHVDVAGEINTWTSR-RDLDPARRVIA   79 (172)
T ss_dssp             CEEEEEEEEESSCHHHHHHHHHCGGG-HHHHCSS-EEEEEEEEEETT-EEEEEEEEEETTEEEEEEEE-EEEETTTTEEE
T ss_pred             CcEEEEEEEeCCCHHHHHHHHHhHHH-HHhhCcc-cceEEEEecCCC-EEEEEEEEecCCEEEEEEEE-EEEeCCCCEEE
Confidence            357999999999999999999 9998 8999997 889998876532 22223444444432223334 34788888999


Q ss_pred             EEEEecc-ccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCC
Q 031431           82 YSVIEGN-DLADYKLEKISFEHQWRASPNGGSICKTICKLHAKGE  125 (159)
Q Consensus        82 y~v~eg~-~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~  125 (159)
                      |++++++ ++   +.+..  +++|.|.++++|.|+|+.+|+....
T Consensus        80 ~~~~~~~gpf---~~~~g--~w~f~~~~~~~t~V~~~~~~~~~~~  119 (172)
T 3tfz_A           80 YRQLETAPIV---GHMSG--EWRAFTLDAERTQLVLTHDFVTRAA  119 (172)
T ss_dssp             EEEEECCTTE---EEEEE--EEEEEEEETTEEEEEEEEEEEECCC
T ss_pred             EEEeeCCCCh---hhcEE--EEEEEECCCCcEEEEEEEEEEEcCh
Confidence            9999653 22   33333  4566887667899999999998643

>3ijt_A SMU.440, putative uncharacterized protein; hypothetical protein, unknown function; 2.38A {Streptococcus mutans} SCOP: d.129.3.9 PDB: 2b79_A

Probab=99.58  E-value=1.9e-13  Score=100.72  Aligned_cols=104  Identities=13%  Similarity=0.094  Sum_probs=81.5

Q ss_pred             EEEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEecCCceeEEEEEEEEEecccceEEE
Q 031431            4 VTYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQVKYAKHKIEEEDKVNLKLKY   82 (159)
Q Consensus         4 ~~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~y   82 (159)
                      ++++.+++|+|||++||+++ |+.+ .|.|.|. +.++++ +|.-.+|+.+.+++..+.   .+.++|+++|+.++ +++
T Consensus        18 ~~i~~si~I~Appe~VW~~ltD~~~-~~~W~p~-v~~~~~-~G~~~~G~~~~~~~~~~~---~~~~~v~~~~p~~~-~~~   90 (155)
T 3ijt_A           18 MKFSFELAVNTKKEDAWTYYSQVNQ-WFVWEGD-LEQISL-EGEFTTGQKGKMKMEDMP---ELAFTLVEVRENQC-FSD   90 (155)
T ss_dssp             EEEEEEEEESSCHHHHHHHHHCGGG-GGGTSTT-EEEEEE-SSSSSTTCEEEEEETTSC---CEEEEECCCBTTTE-EEE
T ss_pred             EEEEEEEEEcCCHHHHHHHHhCccc-ccccchh-hEeeec-cCCCCCCCEEEEEeCCCC---cEEEEEEEEeCCcE-EEE
Confidence            79999999999999999999 9998 8999996 888874 676578999888876553   57789999988876 677


Q ss_pred             EEEeccccCCCceeEEEEEEEEEECCCCCeEEEEEEEEE
Q 031431           83 SVIEGNDLADYKLEKISFEHQWRASPNGGSICKTICKLH  121 (159)
Q Consensus        83 ~v~eg~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e  121 (159)
                      ...-+  .   ..+.  .+..|+|.++++|.++|+.+|.
T Consensus        91 ~~~~p--~---~~~~--~~h~l~p~~~ggTrvt~~~~~~  122 (155)
T 3ijt_A           91 LTATP--F---GNVL--FEHEILENPDGTISLRHSVSLT  122 (155)
T ss_dssp             EEEET--T---EEEE--EEEEEEECTTSCEEEEEEEEES
T ss_pred             EEecC--C---eEEE--EEEEEEEcCCCcEEEEEEEEEE
Confidence            54322  1   2222  3445688777899999999993

>2pcs_A Conserved protein; structural genomics, unknown function, ligand binding, PSI-2 structure initiative; HET: UNL; 2.40A {Geobacillus kaustophilus} SCOP: d.129.3.10

Probab=99.52  E-value=1.5e-12  Score=94.92  Aligned_cols=143  Identities=8%  Similarity=-0.009  Sum_probs=93.3

Q ss_pred             EEEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEecCCceeEE--EEEEEEEecccceE
Q 031431            4 VTYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQVKYA--KHKIEEEDKVNLKL   80 (159)
Q Consensus         4 ~~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~~~~--kErl~~~D~~~~~~   80 (159)
                      ++++.++.|++|+++||+++ |+.+ +|+|+|+ +.+++.+.|+   +....+++..|+....+  +-++..+|+.. ++
T Consensus         3 m~i~~~~~i~ap~e~Vw~~l~D~e~-~~~w~p~-~~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~   76 (162)
T 2pcs_A            3 LNGNGSIELKGTVEEVWSKLMDPSI-LSKCIMG-CKSLELIGED---KYKADLQIGIAAVKGKYDAIIEVTDIKPPY-HY   76 (162)
T ss_dssp             CEEEEEEEEESCHHHHHHHHTCHHH-HHHHSTT-EEEEEEEETT---EEEEEEEECCGGGCEEEEEEEEEEEEETTT-EE
T ss_pred             EEEeeEEEecCCHHHHHHHhcCHHH-HHhhCCC-ceEeEEeCCC---eEEEEEEEEeeeEEEEEEEEEEEEecCCCc-EE
Confidence            57999999999999999999 9997 8999997 7788876542   12223344333211223  33666677765 45


Q ss_pred             EEEEEeccccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCC-CCCCHHHHH-hHHHHHHHHHHHHHHHHhhCC
Q 031431           81 KYSVIEGNDLADYKLEKISFEHQWRASPNGGSICKTICKLHAKGE-VEVTEEQAK-AGKERVLGVVKGVEAYLQANP  155 (159)
Q Consensus        81 ~y~v~eg~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~-~~~~~~~~~-~~~~~~~~~~k~le~~l~~~~  155 (159)
                      .++....+.  . .....+.+++|+|.++++|.++|+++++..+. ..+....++ .++..+..+++.|.++|.++.
T Consensus        77 ~~~~~~~~~--~-~~~~~~~~~~l~~~~~~gT~v~~~~~~~~~g~l~~~~~~l~~~~~~~~~~~~~~~lk~~~e~~~  150 (162)
T 2pcs_A           77 KLLVNGEGG--P-GFVNAEGVIDLTPINDECTQLTYTYSAEVGGKVAAIGQRMLGGVAKLLISDFFKKIQKEIAKSK  150 (162)
T ss_dssp             EEEEEEEET--T-EEEEEEEEEEEEESSSSEEEEEEEEEEEEESGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             EEEEEecCC--C-ccEEEEEEEEEEecCCCcEEEEEEEEEEECCCHHHhhHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence            665542211  0 22334567778885566899999999998654 233344444 445666888888888887654

>3ggn_A Uncharacterized protein DR_A0006; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Deinococcus radiodurans R1} PDB: 2kcz_A

Probab=99.43  E-value=6.4e-12  Score=91.74  Aligned_cols=110  Identities=15%  Similarity=0.264  Sum_probs=75.0

Q ss_pred             CccEEEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEecC-C-ceeEEEEEEEEEeccc
Q 031431            1 MGVVTYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEG-G-QVKYAKHKIEEEDKVN   77 (159)
Q Consensus         1 m~~~~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g-~-~~~~~kErl~~~D~~~   77 (159)
                      ||..+++.++.|++|+++||+++ |+.+ +|+|+|. +.+++.+++    |. -.|..... | ......-++..+++ .
T Consensus         1 ~~~~~v~~s~~I~ap~e~V~~~~~D~e~-~p~w~p~-~~~v~~~~~----~~-~~~~~~~~~G~~~~~~~~~v~e~~p-~   72 (155)
T 3ggn_A            1 MGETVVRDAVTIGKPAEQLYAVWRDLPG-LPLLMTH-LRSVEVLDD----KR-SRWTVEAPAPLGTVSWEAELTADEP-G   72 (155)
T ss_dssp             ---CEEEEEEEESSCHHHHHHHHHCGGG-HHHHSTT-CCEEEECSS----SE-EEEEEECCTTTCEEEEEEEEEEEET-T
T ss_pred             CCccEEEEEEEEcCCHHHHHHHHhCHHH-hHHHhhh-ceEEEEecC----Ce-eEEEEEecCCcceEEEEEEEEEecC-C
Confidence            88899999999999999999999 9998 8999997 888887654    22 22333321 3 22334556665544 4


Q ss_pred             ceEEEEEEeccccCCCceeEEEEEEEEEECC-CCCeEEEEEEEEEEcC
Q 031431           78 LKLKYSVIEGNDLADYKLEKISFEHQWRASP-NGGSICKTICKLHAKG  124 (159)
Q Consensus        78 ~~~~y~v~eg~~l~~Y~~~~~~~~~~~~p~~-~g~t~v~W~~~~e~~~  124 (159)
                      +.+.++.++|+..    ..  ..+++|.|.+ +++|.|+++++|++.+
T Consensus        73 ~~i~~~~~~g~~~----~~--~g~~~F~~~~~~~gT~V~~~~~~~~~~  114 (155)
T 3ggn_A           73 KRIAWRSLPGARI----EN--SGEVLFRPAPGARGTEVVVRLTYRPPG  114 (155)
T ss_dssp             TEEEEEECTTCSS----CE--EEEEEEEECSSSSCEEEEEEEEEC---
T ss_pred             CEEEEEECCCCCc----ce--EEEEEEEECCCCCceEEEEEEEEECCC
Confidence            5588999888642    22  2345668873 5689999999999855

>2ns9_A Hypothetical protein APE2225; uncharacterized conserved protein, structural genomics, PSI, structure initiative; 1.80A {Aeropyrum pernix} SCOP: d.129.3.10

Probab=99.41  E-value=4.7e-11  Score=86.04  Aligned_cols=137  Identities=20%  Similarity=0.221  Sum_probs=84.9

Q ss_pred             EEEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEecCCceeEEE--EEEEEEecccceE
Q 031431            4 VTYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQVKYAK--HKIEEEDKVNLKL   80 (159)
Q Consensus         4 ~~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~~~~k--Erl~~~D~~~~~~   80 (159)
                      ++++.+++|++|+++||+++ |+.+ +|+|+|+ +.+++ +.|+   +....++...|.......  -++..+++.+ ++
T Consensus        13 m~i~~~~~i~ap~e~Vw~~l~D~~~-~~~w~p~-~~~~~-~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~i   85 (157)
T 2ns9_A           13 VRYEGSFEVSKTPEEVFEFLTDPKR-FSRAFPG-FKSVE-VEDG---SFTIELRLSLGPLRGDARVRASFEDLEKPS-KA   85 (157)
T ss_dssp             EEEEEEEEESSCHHHHHHHHTCHHH-HGGGSTT-EEEEE-EETT---EEEEEEEEESSSSEEEEEEEEEEEEEETTT-EE
T ss_pred             EEEeeEEEEcCCHHHHHHHHcCHHH-HHhhCCC-ceEEE-ECCC---EEEEEEEEEEcceeEEEEEEEEEEecCCCc-EE
Confidence            48999999999999999999 9997 8999997 67777 5443   222223333332112233  3555677654 56


Q ss_pred             EEEEEeccccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCC-CCCCHHHHH-hHHHHHHHHHHHHHHHH
Q 031431           81 KYSVIEGNDLADYKLEKISFEHQWRASPNGGSICKTICKLHAKGE-VEVTEEQAK-AGKERVLGVVKGVEAYL  151 (159)
Q Consensus        81 ~y~v~eg~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~-~~~~~~~~~-~~~~~~~~~~k~le~~l  151 (159)
                      .|+....+..   .......+++|.|.+ ++|.++|+.+|+..+. ..+....++ ........+++.|.+++
T Consensus        86 ~~~~~~~~~~---~~~~~~~~~~l~~~~-~gT~v~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~lk~~~  154 (157)
T 2ns9_A           86 TVKGSGRGAG---STLDFTLRFAVEPSG-GGSRVSWVFEGNVGGLAASMGGRVLDSLARRMINDVISGVKREL  154 (157)
T ss_dssp             EEEEEEECSS---EEEEEEEEEEEEEET-TEEEEEEEEEEEEEEGGGGSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEecCCC---ccEEEEEEEEEEeCC-CcEEEEEEEEEEECcCHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7764322111   123345566778876 6899999999987653 233333444 23334556666666655

>1t17_A Conserved hypothetical protein; beta-alpha-beta-BETA-beta-BETA-beta-BETA-helix, structural G protein structure initiative, PSI, NESG; NMR {Caulobacter crescentus} SCOP: d.129.3.6

Probab=99.39  E-value=8.3e-12  Score=90.01  Aligned_cols=136  Identities=12%  Similarity=0.089  Sum_probs=92.1

Q ss_pred             EEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCC--C-CCCcEEEEEEecCCceeEEEEEEEEEecccceE
Q 031431            5 TYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGN--G-GPGSIKKFTIVEGGQVKYAKHKIEEEDKVNLKL   80 (159)
Q Consensus         5 ~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~--g-~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~   80 (159)
                      +++.++.|++|+++||+++ |..+ +|+|+|. +.++++++.+  | +.+....++..-++-.....-|+. +|+.++.+
T Consensus         3 ~~~~s~~i~ap~~~v~~~v~D~~~-~p~~~p~-~~~~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~i   79 (148)
T 1t17_A            3 RHVVTKVLPYTPDQLFELVGDVDA-YPKFVPW-ITGMRTWNGRVDGAVSTVDAEAQVGFSFLREKFATRVR-RDKDARSI   79 (148)
T ss_dssp             EEEEEEEESSCTHHHHHHHTTTTC-CSSCCSS-CCCCCEEEEEEETTEEEEEEEEECSTTSSCCEEEEEEE-EETTTCEE
T ss_pred             EEEEEEEecCCHHHHHHHHHHHhh-HHhhCCC-cCeeEEEEecCCCCCceEEEEEEEEecceeEEEEEEEE-EcCCCcEE
Confidence            6899999999999999999 9998 8999997 7777777542  2 134455566654432334445655 57777789


Q ss_pred             EEEEEeccccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHHH-hHHHHHHHHHHHHHHHHh
Q 031431           81 KYSVIEGNDLADYKLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAK-AGKERVLGVVKGVEAYLQ  152 (159)
Q Consensus        81 ~y~v~eg~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~~-~~~~~~~~~~k~le~~l~  152 (159)
                      .++.++|++    +....  +++|.|.++| |.|++..+|+..+.  .....+. .....+..|++++++.+.
T Consensus        80 ~~~~~~G~f----~~~~g--~w~f~~~~~g-t~v~~~~~~~~~~~--l~~~l~~~~~~~~~~~~~~~f~~r~~  143 (148)
T 1t17_A           80 DVSLLYGPF----KRLNN--GWRFMPEGDA-TRVEFVIEFAFKSA--LLDAMLAANVDRAAGKLIACFEARAQ  143 (148)
T ss_dssp             EEEESSTTS----SCEEE--EEEEEEETTE-EEEEEEEEECCSCH--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEECCCCh----hccEE--EEEEEECCCC-eEEEEEEEEEECcH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999998853    22333  5566888776 99999999998643  1112222 233445667777666553

>3p9v_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.78A {Marinobacter aquaeolei}

Probab=99.22  E-value=7.6e-10  Score=81.30  Aligned_cols=135  Identities=16%  Similarity=0.119  Sum_probs=84.7

Q ss_pred             EEEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEE---ecCCc--eeEEEEEEEEEeccc
Q 031431            4 VTYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTI---VEGGQ--VKYAKHKIEEEDKVN   77 (159)
Q Consensus         4 ~~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~---~~g~~--~~~~kErl~~~D~~~   77 (159)
                      .+++.++.|++||++||+++ |+.+ +|.+.|+++. .+- .++   |.. .+..   ..|+.  .....-|. ..|++.
T Consensus         7 i~v~~s~~I~ap~e~v~~lv~Dve~-w~~~yp~~~p-~~~-~~~---~~~-~~~~a~l~vg~~~~~~~~~s~~-~~~~~~   78 (161)
T 3p9v_A            7 IELNRDLEIPASYDEVFDLLADVPK-SASHFPKVDK-LVD-LGN---NAY-RWEMEKVGVDKHAIQSVYACTY-HADKEA   78 (161)
T ss_dssp             EEEEEEEEESSCHHHHHHHHTCHHH-HHTTSTTEEE-EEE-EET---TEE-EEEECCBSSGGGCBCCEEEEEE-EEETTT
T ss_pred             EEEEEEEEEcCCHHHHHHHHhChhh-hHhhCCCeEE-EEE-cCC---Cce-EEEEEEEeeeeEEEEEEEEEEE-EEcCCC
Confidence            67889999999999999999 9998 7888887443 321 233   222 2333   23322  11333343 367768


Q ss_pred             ceEEEEEEeccccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCC-CCCCHHHHH-hHHHHHHHHHHHHHHHH
Q 031431           78 LKLKYSVIEGNDLADYKLEKISFEHQWRASPNGGSICKTICKLHAKGE-VEVTEEQAK-AGKERVLGVVKGVEAYL  151 (159)
Q Consensus        78 ~~~~y~v~eg~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~-~~~~~~~~~-~~~~~~~~~~k~le~~l  151 (159)
                      +++.+++++|+..   +..  ..+++|+|.++|+|.|+|..+|+.... +..-...+. ...+.+..|.+++++-+
T Consensus        79 ~~I~~~~~~g~~~---~~l--~g~w~f~p~~~g~t~V~~~~~~e~~~pl~~ll~~~~~~~~~~~~~~~v~af~~ra  149 (161)
T 3p9v_A           79 GKITWSPIKGEGN---GVV--SGSWTLSAKGDNATAVKFQTSAELTVPLPSLLKLAISPVIKHEFNSLVDTYMANL  149 (161)
T ss_dssp             TEEEEEECTTSTT---EEE--EEEEEEEESSSSCEEEEEEEEEEEEECSCGGGHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEEecCccc---eeE--EEEEEEEECCCCeEEEEEEEEEEEcCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8899999988753   222  345667998887899999999999743 222222222 22234455666655543

>2leq_A Uncharacterized protein; start domains, structural genomics, PSI-biology, protein STR initiative; NMR {Cytophaga hutchinsonii}

Probab=99.08  E-value=1.7e-08  Score=71.23  Aligned_cols=134  Identities=13%  Similarity=0.143  Sum_probs=85.7

Q ss_pred             EEEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEecCCceeEEEEEEEEEecccceEEE
Q 031431            4 VTYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQVKYAKHKIEEEDKVNLKLKY   82 (159)
Q Consensus         4 ~~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~y   82 (159)
                      .+++.++.|+||+++||+++ |+.+ +++|.++..  +   +++-.+|..-.+....++..-.+..++.++++.++ +.|
T Consensus         5 ~~i~~~~~i~ap~e~Vw~~ltd~~~-~~~W~~~~~--~---~~~~~~G~~~~~~~~~~g~~~~~~~~v~~~~p~~~-l~~   77 (146)
T 2leq_A            5 LIAQVKTVINAPIEKVWEALVNPEI-IKEYMFGTT--V---VSDWKEGSQIVWKGEWKGKAYEDKGTILQFNERSI-LQY   77 (146)
T ss_dssp             EEEEEEEEECSCHHHHHHHHSCTTH-HHHHSSSCE--E---ECCCSTTCEEEEEEEETTEEEEEEEEEEEEETTTE-EEE
T ss_pred             ceEEEEEEECCCHHHHHHHHcCHHH-hceeEcCCc--c---eeccCCCCEEEEEecCCCceecccEEEEEEcCCCE-EEE
Confidence            68999999999999999999 9887 899963222  1   34434555555666555433356778888988655 677


Q ss_pred             EEEec-ccc---CCCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHHHhHHHHHHHHHHHHHHHHhhC
Q 031431           83 SVIEG-NDL---ADYKLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQAN  154 (159)
Q Consensus        83 ~v~eg-~~l---~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~~~~~~~~~~~~k~le~~l~~~  154 (159)
                      +.... +.+   .. ..  .+.+++|+|.+ ++|.++|+.+..+.      ........+....++..|.++|.+.
T Consensus        78 ~~~~~~~g~~~~~~-~~--~~~~~~l~~~~-~gT~l~~~~~~~~~------~~~~~~~~~gw~~~l~~Lk~~le~~  143 (146)
T 2leq_A           78 SHFSPLTGKPDLPE-NY--HVVTITLTALK-KGVEVELTQDNNET------EKEQKHSEDNWNTMLEGLKKFLENK  143 (146)
T ss_dssp             ECBCGGGCCCSCGG-GS--CEEEEEEEECS-SCEEEEEEEEEESS------HHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred             EEccCccCCCCCCC-Cc--eEEEEEEEEcC-CCeEEEEEEecCCc------hhhHhhHHhhHHHHHHHHHHHHhcc
Confidence            76432 101   11 11  23456678874 47999998754331      1223334455677888888887654

>2il5_A Hypothetical protein; structural genomics, APC23650, PSI-2, structure initiative; 2.30A {Staphylococcus aureus subsp} SCOP: d.129.3.5

Probab=99.06  E-value=2.3e-08  Score=73.34  Aligned_cols=146  Identities=14%  Similarity=0.107  Sum_probs=88.5

Q ss_pred             EEEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEe-cCCceeEEEEEEEEEecccceEE
Q 031431            4 VTYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIV-EGGQVKYAKHKIEEEDKVNLKLK   81 (159)
Q Consensus         4 ~~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~-~g~~~~~~kErl~~~D~~~~~~~   81 (159)
                      .+++.+++|+||+++||+++ |... +++|.+..--.+...+++-.+|..-.+.+. ++|..-...-++.++++.++ +.
T Consensus        14 ~~i~~~~~i~ap~e~Vw~altdp~~-~~~W~~p~~~~~~~~~~d~~~Gg~~~~~~~~~~G~~~~~~~~v~e~~p~~r-l~   91 (171)
T 2il5_A           14 VEVEIEKLYKFSPELVYEAWTKKDL-LKQWFMTSARTNKEIEADVKEGGKYRIVDQQRNGKVNVIEGIYESLVMDEY-VK   91 (171)
T ss_dssp             EEEEEEEEESSCHHHHHHHTTCHHH-HTTTSSSCTTTEEEEEECCSTTCEEEEEEECGGGCEEEEEEEEEEEETTTE-EE
T ss_pred             ceEEEEEEeCCCHHHHHHHHCCHHH-HHhccCCCCccceEEEecccCCCEEEEEEECCCCCEEEEEEEEEEEcCCCE-EE
Confidence            57899999999999999999 8876 778775321112333455455655545544 23332346678888887666 67


Q ss_pred             EEEEeccccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCC--CCCC------HHHHHhHHHHHHHHHHHHHHHHhh
Q 031431           82 YSVIEGNDLADYKLEKISFEHQWRASPNGGSICKTICKLHAKGE--VEVT------EEQAKAGKERVLGVVKGVEAYLQA  153 (159)
Q Consensus        82 y~v~eg~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~--~~~~------~~~~~~~~~~~~~~~k~le~~l~~  153 (159)
                      |+...++. +. .  ....+++|.|.++|+|.++++.+..+..+  ....      ........+.-..++..|.++|.+
T Consensus        92 ~~~~~~~~-~~-~--~~~~~~~l~~~~~g~T~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gw~~~L~~L~~~le~  167 (171)
T 2il5_A           92 MTIGMPGL-SE-T--QDVIEVEFFERETGGTQMLFYYRSLVEKERRFTNLEYKQKKKEYHDAMVHGFELMFDKMYHVIET  167 (171)
T ss_dssp             EEESCC---CC-C--CEEEEEEEEECSSSSEEEEEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             EEEEecCC-CC-C--cEEEEEEEEECCCCCEEEEEEEEeccCcccccccchhccchhHHHHHHHHHHHHHHHHHHHHHhh
Confidence            77653332 21 1  13456677888666899999986544311  1000      122223334556778888888765


Q ss_pred             CC
Q 031431          154 NP  155 (159)
Q Consensus       154 ~~  155 (159)
                      .+
T Consensus       168 ~~  169 (171)
T 2il5_A          168 ST  169 (171)
T ss_dssp             TS
T ss_pred             cc
Confidence            43

>1xuv_A Hypothetical protein MM0500; alpha-beta protein, northeast structural genomics consortium, NESG, structural genomics; 2.10A {Methanosarcina mazei GO1} SCOP: d.129.3.5

Probab=99.05  E-value=2.8e-08  Score=73.69  Aligned_cols=138  Identities=9%  Similarity=0.002  Sum_probs=85.2

Q ss_pred             EEEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEe-cCCceeEEEEEEEEEecccceEE
Q 031431            4 VTYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIV-EGGQVKYAKHKIEEEDKVNLKLK   81 (159)
Q Consensus         4 ~~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~-~g~~~~~~kErl~~~D~~~~~~~   81 (159)
                      .+++.++.|+||+++||+++ |... +++|++..--.+...+++-.+|..-.+.+. +++......-++.++++.++ +.
T Consensus        22 ~~i~~~r~i~Ap~e~Vw~altdpe~-~~~W~~~~~~~~~~~~~d~~~Gg~~~~~~~~~~G~~~~~~~~v~e~~p~~r-l~   99 (178)
T 1xuv_A           22 QEIIITREFDAPRELVFKAFTDPDL-YTQWIGPRGFTTALKIFEPKNGGSWQYIQKDPEGNEYAFHGVNHDVTEPER-II   99 (178)
T ss_dssp             SEEEEEEEESSCHHHHHHHHHCHHH-HTTTCSSTTCEEEEEEECCSTTCEEEEEEECTTSCEEEEEEEEEEEETTTE-EE
T ss_pred             cEEEEEEEECCCHHHHHHHhCCHHH-HHhCCCCCCccceEEEEecccCCEEEEEEECCCCCEEEEEEEEEEEeCCCE-EE
Confidence            46889999999999999999 9886 788865321123333455455655545544 34433446778888988766 67


Q ss_pred             EEEEecc-ccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHHHh-----HHHHHHHHHHHHHHHHhh
Q 031431           82 YSVIEGN-DLADYKLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAKA-----GKERVLGVVKGVEAYLQA  153 (159)
Q Consensus        82 y~v~eg~-~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~~~-----~~~~~~~~~k~le~~l~~  153 (159)
                      |+...++ .... .  ....+++|.|.++++|.++++..|..       ++....     ..+.-..++..|.++|..
T Consensus       100 ~~~~~~~~~~~~-~--~~~v~~~l~~~~~ggT~lt~~~~~~~-------~~~~~~~~~~~~~~Gw~~~L~~Lk~~le~  167 (178)
T 1xuv_A          100 STFEFEGLPEKG-H--VILDTARFEALPGDRTKLTSHSVFQT-------IEDRDGMLQSGMEEGINDSYERLDELLEK  167 (178)
T ss_dssp             EEEEETTSSSSC-C--CEEEEEEEEEETTTEEEEEEEEECSS-------HHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEecCCCCCC-C--cEEEEEEEEEcCCCCEEEEEEEEeCC-------HHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence            7765332 2101 1  13456677888656899999988521       111111     123456677777777654

>1z94_A Conserved hypothetical protein; NESG, CV1439, structural genomics, PSI structure initiative; 2.10A {Chromobacterium violaceum} SCOP: d.129.3.5

Probab=99.04  E-value=1.3e-08  Score=72.21  Aligned_cols=137  Identities=15%  Similarity=0.106  Sum_probs=87.7

Q ss_pred             EEEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEe--cCCceeEEEEEEEEEecccceE
Q 031431            4 VTYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIV--EGGQVKYAKHKIEEEDKVNLKL   80 (159)
Q Consensus         4 ~~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~--~g~~~~~~kErl~~~D~~~~~~   80 (159)
                      .+++.+++|+||+++||+++ |... +++|.|..--.+...+++-.+|..-.+.+.  .++......-++.++++.++ +
T Consensus         3 ~~~~~~~~i~ap~e~Vw~altd~~~-~~~W~~~~~~~~~~~~~~~~~Gg~~~~~~~~~~~g~~~~~~~~v~~~~p~~~-l   80 (147)
T 1z94_A            3 NTIRLHRVLSAPPERVYRAFLDPLA-LAKWLPPEGFVCKVLEHDARVGGAYKMEFLAFASGQKHAFGGRYLELVPGER-I   80 (147)
T ss_dssp             CCEEEEEEESSCHHHHHHHTTCHHH-HHHHSSCTTEEEEEEEECCSTTCEEEEEEEETTTCCEEEEEEEEEEEETTTE-E
T ss_pred             cEEEEEEEeCCCHHHHHHHhCCHHH-HhhccCCCCEeeeEEEEccCCCcEEEEEEEECCCCCEEEEEEEEEEEcCCCE-E
Confidence            36888999999999999999 8886 789887531122233455456666666554  33333456778888988665 7


Q ss_pred             EEEEEeccc-cCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHHHhHHHHHHHHHHHHHHHHhh
Q 031431           81 KYSVIEGND-LADYKLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQA  153 (159)
Q Consensus        81 ~y~v~eg~~-l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~~~~~~~~~~~~k~le~~l~~  153 (159)
                      .|+...++. ...    ....+++|.|.+ ++|.++++.++.+...   ..+.   ....-..++..|.++|.+
T Consensus        81 ~~~~~~~~~~~~~----~~~~~~~l~~~~-~gT~l~~~~~~~~~~~---~~~~---~~~gw~~~L~~L~~~le~  143 (147)
T 1z94_A           81 RYTDRFDDAGLPG----DMITTITLAPLS-CGADLSIVQEGIPDAI---PPEN---CYLGWQQSLKQLAALVEP  143 (147)
T ss_dssp             EEEEEESCCC-------CEEEEEEEEEET-TEEEEEEEEECCCTTS---CHHH---HHHHHHHHHHHHHHHHSC
T ss_pred             EEEEEEeCCCCCC----cEEEEEEEEecC-CCEEEEEEEEcCCchh---hHHH---HHHHHHHHHHHHHHHHHh
Confidence            888765432 211    134566778875 4799999988754221   1222   234556778888888754

>2lcg_A Uncharacterized protein; start domain, structural genomics, northeast structural GENO consortium, NESG, unknown function, AHSA1; NMR {Ralstonia metallidurans}

Probab=99.02  E-value=4e-08  Score=70.07  Aligned_cols=131  Identities=10%  Similarity=0.094  Sum_probs=86.1

Q ss_pred             EEEEEEEEEcCCHHHHHhhh-cCCCCcccc-cCC-ceeEEEEEcCCCCCCcEEEEEEec--CCceeEEEEEEEEEecccc
Q 031431            4 VTYESEETYAVPPARMFNAL-ASDNLPSKI-FPD-VVKNVEVLEGNGGPGSIKKFTIVE--GGQVKYAKHKIEEEDKVNL   78 (159)
Q Consensus         4 ~~~~~e~~i~apa~~vW~~~-d~~~~lp~~-~P~-~v~s~~~~eG~g~~GsvR~~~~~~--g~~~~~~kErl~~~D~~~~   78 (159)
                      ++++.++.|+||+++||+++ |... +++| .+. -+. +...+++-.+|..-.+.+..  |.......-++.++++.++
T Consensus         1 m~i~~~~~i~ap~e~Vw~altd~~~-~~~W~~~~~~~~-~~~~~~d~~~Gg~~~~~~~~~~g~~~~~~~~~v~~~~p~~~   78 (142)
T 2lcg_A            1 MNITVETTVAAPVGKVWRAYTTPED-IKQWNAASDDWH-TTAATVDLREGGAFSSRMEAKDGSMGFDFAGTYTKVVENKR   78 (142)
T ss_dssp             CEEEEEEEESSCHHHHHHHTTCHHH-HHHHCCSSTTEE-EEEEEECCSTTCEEEEEEEETTSSCEEEEEEEEEEEETTTE
T ss_pred             CeEEEEEEeCCCHHHHHHHhCCHHH-HhcCCCCCCCcc-ceeeEEccccCCEEEEEEEcCCCCceeeeEEEEEEEcCCCE
Confidence            37899999999999999999 9886 7888 653 232 22334555566666555542  3223456778888988766


Q ss_pred             eEEEEEEeccccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHHHhHHHHHHHHHHHHHHHHhhCCC
Q 031431           79 KLKYSVIEGNDLADYKLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQANPD  156 (159)
Q Consensus        79 ~~~y~v~eg~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~~~~~~~~~~~~k~le~~l~~~~~  156 (159)
                       +.|+. .|          .+.+++|.|.+ ++|.++++.++.  .  ....+.+   .+.-..++..|+++|...++
T Consensus        79 -l~~~~-~g----------~~~~~~l~~~~-~gT~l~~~~~~~--~--~~~~~~~---~~Gw~~~L~~L~~~le~~~~  136 (142)
T 2lcg_A           79 -IEYAF-GD----------RTAKVEFLEAP-QGVTVRVSFVAE--T--EYPVEQQ---QQGWQAILNNFKRHVESHLE  136 (142)
T ss_dssp             -EEEEE-TT----------EEEEEEEEEET-TEEEEEEEEECC--S--SSCHHHH---HHHHHHHHHHHHHHHHHSCC
T ss_pred             -EEEEc-CC----------CEEEEEEEEcC-CCEEEEEEEecC--C--HHHHHHH---HHHHHHHHHHHHHHHHHHHh
Confidence             67875 11          34566778875 479999986652  1  1222333   34556778888888877664

>1xn6_A Hypothetical protein BC4709; structural genomics, protein structure initiative, PSI, NESG target protein BCR68, alpha + beta; NMR {Bacillus cereus} SCOP: d.129.3.5

Probab=98.99  E-value=2.4e-09  Score=76.43  Aligned_cols=127  Identities=9%  Similarity=0.032  Sum_probs=81.9

Q ss_pred             EEEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEecCCceeEEEEEEEEEecccceEEE
Q 031431            4 VTYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQVKYAKHKIEEEDKVNLKLKY   82 (159)
Q Consensus         4 ~~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~y   82 (159)
                      .+++.++.|+||+++||+++ |... +++|.|. +      +++-.+|....+.+ +++.   +.-++.++++.++ +.|
T Consensus         8 ~~i~~~~~i~ap~e~Vw~~ltd~~~-~~~W~~~-~------~~~~~~G~~~~~~~-~~g~---~~~~v~e~~p~~~-l~~   74 (143)
T 1xn6_A            8 NDIKQTIVFNASIQKVWSVVSTAEG-IASWFMP-N------DFVLEVGHEFHVQS-PFGP---SPCKVLEIDEPNH-LSF   74 (143)
T ss_dssp             CCEEEEEEESSCHHHHHHTTSCSHH-HHTTSCC-B------CCCCCTTCEECBCC-TTCC---CCEEEEEEETTTE-EEE
T ss_pred             CEEEEEEEEcCCHHHHHHHHhCHhH-HHHhcCC-C------CcCcCCCCEEEEEE-cCCC---ceEEEEEEeCCCE-EEE
Confidence            46899999999999999999 9887 8999986 2      34434565555555 3332   5668888998654 677


Q ss_pred             EEEeccccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEc-CCCCC-----CHHHHHhHHHHHHHHH-HHHHHHHh
Q 031431           83 SVIEGNDLADYKLEKISFEHQWRASPNGGSICKTICKLHAK-GEVEV-----TEEQAKAGKERVLGVV-KGVEAYLQ  152 (159)
Q Consensus        83 ~v~eg~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~-~~~~~-----~~~~~~~~~~~~~~~~-k~le~~l~  152 (159)
                      +...+    .     ...+++|+|.++|+|.++++.+..+. ++..+     .........+.-..++ ..|.++|.
T Consensus        75 ~~~~~----~-----~~~~~~l~~~~~g~T~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gw~~~l~~~L~~~le  142 (143)
T 1xn6_A           75 SWDTD----G-----WVVSFDLKDLGDNKTEFTLIHGGWKHPDEILPKANAKSSIIRDRMSGGWVAIVNEKLKKVVE  142 (143)
T ss_dssp             EETTT----T-----EEEEEEEEEEETTEEEEEEEEECCCSTTCBCTTTCSBHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred             EEeCC----C-----EEEEEEEEECCCCcEEEEEEEEccCccccccccccchhhHHHHHHHHhHHHHHHHHHHHHhc
Confidence            76433    1     23456678876657999988774442 22211     1223333344556666 77777663

>3q6a_A Uncharacterized protein; structural genomics, PSI-biology; 1.80A {Staphylococcus saprophyticus subsp}

Probab=98.89  E-value=8.3e-08  Score=67.82  Aligned_cols=127  Identities=15%  Similarity=0.154  Sum_probs=82.3

Q ss_pred             EEEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEecCCceeEEEEEEEEEecccceEEE
Q 031431            4 VTYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQVKYAKHKIEEEDKVNLKLKY   82 (159)
Q Consensus         4 ~~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~y   82 (159)
                      ++++.++.|+||+++||+++ |... +++|.+.   .   .+++-.+|..-.+.+....  ....-++.++++.++ +.|
T Consensus         1 M~i~~~~~i~ap~e~Vw~altd~~~-~~~W~~~---~---~~~~~~~Gg~~~~~~~~~~--~~~~~~v~~~~p~~~-l~~   70 (135)
T 3q6a_A            1 MDIITKMQVDVPRETVFEAFVDPEK-IGGFWFS---S---SSERWEQGKTITLRYEEYD--AELNINIERVEDNQL-IAF   70 (135)
T ss_dssp             CCEEEEEEESSCHHHHHHHHHCTTT-GGGTSSS---E---ESSCCCTTCEEEEECGGGT--C-CEEEEEEEETTTE-EEE
T ss_pred             CeEEEEEEeCCCHHHHHHHHcCHHH-hcccCCC---C---CcccccCCCEEEEEEcCcC--ceEEEEEEEEcCCCE-EEE
Confidence            46899999999999999999 9887 8898764   1   2455456666556654221  123446777888765 677


Q ss_pred             EEEeccccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHHHhHHHHHHHHHHHHHHHHhhCCC
Q 031431           83 SVIEGNDLADYKLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQANPD  156 (159)
Q Consensus        83 ~v~eg~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~~~~~~~~~~~~k~le~~l~~~~~  156 (159)
                      +...|           ..+++|+|.+ ++|.++++-...+..    +.+......+.-..++..|.+||.....
T Consensus        71 ~~~~g-----------~~~~~l~~~~-~gT~l~~~~~~~~~~----~~~~~~~~~~GW~~~l~~L~~~le~g~~  128 (135)
T 3q6a_A           71 TWGAH-----------PITIQFEESE-AGTVVTTTEKDFDTQ----DVKQLLGQKEGWVYMLSCLKVYLEHGVT  128 (135)
T ss_dssp             EETTE-----------EEEEEEEEET-TEEEEEEEECCCCSS----CHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             EEcCC-----------eEEEEEEECC-CCEEEEEEEcCCCcc----hHHHHhhchhCHHHHHHHHHHHHhcCcc
Confidence            76421           3466678864 679988874422211    1222233445667788999999877654

>3rd6_A MLL3558 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, unknown function; 2.80A {Mesorhizobium loti}

Probab=98.86  E-value=2e-07  Score=68.08  Aligned_cols=139  Identities=17%  Similarity=0.136  Sum_probs=83.2

Q ss_pred             cEEEEEEEEEcCCHHHHHhhh-cCCCCcccccCCc--eeEEEEEcCCCCCCcEEEEEEe-cCCceeEEEEEEEEEecccc
Q 031431            3 VVTYESEETYAVPPARMFNAL-ASDNLPSKIFPDV--VKNVEVLEGNGGPGSIKKFTIV-EGGQVKYAKHKIEEEDKVNL   78 (159)
Q Consensus         3 ~~~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~--v~s~~~~eG~g~~GsvR~~~~~-~g~~~~~~kErl~~~D~~~~   78 (159)
                      -.++..++.|+||+++||+++ |... +++|.+..  +. +...+++-.+|..-.+.+. ++|..-.+.=++.++++.++
T Consensus         7 ~~~i~~~r~i~Ap~e~Vw~altdp~~-~~~W~~~~~~~~-~~~~~~d~~~Gg~~~~~~~~~~G~~~~~~g~v~e~~p~~r   84 (161)
T 3rd6_A            7 HSTFTIERTYPQSPDRVFHAFADKAT-VRRWRVDGDGFT-VAEFSFDFRVGGGEVSRFSYGGGPEVRLDAQFQDIVPDQR   84 (161)
T ss_dssp             EEEEEEEEEESSCHHHHHHHHHCHHH-HHHHTCCCCC----CEEEECCSTTCEEEEEECSTTSCCEEEEEEEEEEETTTE
T ss_pred             CceEEEEEEECCCHHHHHHHhcCHHH-HhhccCCCCCce-eeEEEEccCcCCEEEEEEECCCCCEEEEEEEEEEEcCCCE
Confidence            368899999999999999999 9886 78888532  21 1223445445555445543 23332346668888988776


Q ss_pred             eEEEEEEe--ccccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHHHhHHHHHHHHHHHHHHHHhh
Q 031431           79 KLKYSVIE--GNDLADYKLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQA  153 (159)
Q Consensus        79 ~~~y~v~e--g~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~~~~~~~~~~~~k~le~~l~~  153 (159)
                       +.|+..-  .+.    .....+.+++|.|.++ +|.++++-+.-...+.. ..+.+.   ++-..++..|++||..
T Consensus        85 -l~~~~~~~~~~~----~~~~s~v~~~l~~~~~-gT~lt~~~~~~~~~~~~-~~~~~~---~GW~~~L~~L~~~le~  151 (161)
T 3rd6_A           85 -IVFSYRMAIGPQ----PMSASLTTVELTPSGD-GTRLTYTEQGAFFDGVD-SAKGRE---EGTRGLLEALAAELQK  151 (161)
T ss_dssp             -EEEEEEEEETTE----EEEEEEEEEEEEEETT-EEEEEEEEEEEEETTCC-CHHHHH---HHHHHHHHHHHHHC--
T ss_pred             -EEEEEEecCCCC----CCCceEEEEEEEECCC-CEEEEEEEEecCcchhh-hHHHHH---HHHHHHHHHHHHHHhh
Confidence             5666431  111    1122456677788754 69999998865332211 122333   4556677777777653

>2l8o_A Uncharacterized protein; mixed alpha-beta protein, PSI-biology, structural genomics, structure initiative; NMR {Cytophaga hutchinsonii}

Probab=98.86  E-value=9e-08  Score=68.66  Aligned_cols=131  Identities=10%  Similarity=0.075  Sum_probs=82.9

Q ss_pred             EEEEEEEEcCCHHHHHhhh-cCCCCcccc-cCC-ceeEEEEEcCCCCCCcEEEEEEe-cCCc-eeEEEEEEEEEecccce
Q 031431            5 TYESEETYAVPPARMFNAL-ASDNLPSKI-FPD-VVKNVEVLEGNGGPGSIKKFTIV-EGGQ-VKYAKHKIEEEDKVNLK   79 (159)
Q Consensus         5 ~~~~e~~i~apa~~vW~~~-d~~~~lp~~-~P~-~v~s~~~~eG~g~~GsvR~~~~~-~g~~-~~~~kErl~~~D~~~~~   79 (159)
                      +++.++.|+||+++||+++ |... +++| .+. -+ .+...+++-.+|..-.+.+. +++. ...+.-++.++++.++ 
T Consensus         3 ~i~~~~~i~Ap~e~Vw~altdpe~-~~~W~~~p~~~-~~~~~~~d~~~Gg~~~~~~~~~~G~~~~~~~g~v~e~~p~~~-   79 (144)
T 2l8o_A            3 KITVEVTVYAAIEKVWKYWNEPAH-IMKWCQASPEW-HVPAAQNDLKAGGTFTTTMAAKDGSMSFDFGGVYDQVKTNDL-   79 (144)
T ss_dssp             SEEEEEEECSCHHHHHHHHHCHHH-HHHHSTTCTTC-EEEEEECCCSTTCEEEEEEECTTSSCEEEEEEEEEEEETTTE-
T ss_pred             EEEEEEEECCCHHHHHHHHCCHHH-HhhccCCCCCc-ccceeEEccCCCCEEEEEEECCCCCceeeeeEEEEEEeCCCE-
Confidence            4788999999999999999 9886 7888 652 22 23334566445554444443 2333 2345667888988776 


Q ss_pred             EEEEEEeccccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHHHhHHHHHHHHHHHHHHHHhhCCC
Q 031431           80 LKYSVIEGNDLADYKLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQANPD  156 (159)
Q Consensus        80 ~~y~v~eg~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~~~~~~~~~~~~k~le~~l~~~~~  156 (159)
                      +.|+. .|    .     .+.+++|.|.+ ++|.++.+..+ +  + ....+.+   .+.-..++..|+++|...++
T Consensus        80 l~~~~-~g----~-----~~v~~~l~~~~-~gT~l~~~~~~-~--~-~~~~~~~---~~Gw~~~L~~L~~~le~~~~  138 (144)
T 2l8o_A           80 IEYTI-GD----G-----RKVRIVFTHTG-DTTNIVESFDP-E--E-TNPRELQ---QSGWQAILNSFKSYTENNLE  138 (144)
T ss_dssp             EEEEE-TT----C-----CEEEEEEEECS-SSEEEEEEECC-C--S-SSCHHHH---HHHHHHHHHHHHHHHGGGTT
T ss_pred             EEEEe-CC----C-----eEEEEEEEEcC-CCEEEEEEEeC-C--C-HHHHHHH---HHHHHHHHHHHHHHHHhHhh
Confidence            67875 23    1     23466778875 57998887655 1  1 1222232   34556778888888876554

>3put_A Hypothetical conserved protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium; 1.83A {Rhizobium etli cfn 42} PDB: 3otl_A*

Probab=98.86  E-value=2.3e-07  Score=68.17  Aligned_cols=139  Identities=12%  Similarity=0.058  Sum_probs=84.7

Q ss_pred             EEEEEEEEEcCCHHHHHhhh-cCCCCcccccCCc--eeEEEEEcCCCCCCcEEEEEE-ecCCceeEEEEEEEEEecccce
Q 031431            4 VTYESEETYAVPPARMFNAL-ASDNLPSKIFPDV--VKNVEVLEGNGGPGSIKKFTI-VEGGQVKYAKHKIEEEDKVNLK   79 (159)
Q Consensus         4 ~~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~--v~s~~~~eG~g~~GsvR~~~~-~~g~~~~~~kErl~~~D~~~~~   79 (159)
                      .++..++.|+||+++||+++ |... +.+|.+..  .. +...+++-.+|..-.+.+ .++|..-.+.-++.++++.++ 
T Consensus         9 ~~i~~~r~i~Ap~e~Vw~a~Tdpe~-l~~W~~~~~~~~-~~~~~~d~~~GG~~~~~~~~~~G~~~~~~g~v~ev~p~~r-   85 (166)
T 3put_A            9 TTFVIERRLTAPVARVFRAWSTPES-KRQWFACHGEWV-PLEYALDFRPGGTERNYTADTDGLLHAYDARYIDIVPDTR-   85 (166)
T ss_dssp             EEEEEEEEESSCHHHHHHHHHCHHH-HHHHHTCC---C-CSEEEECCSTTCEEEEEEECTTSCEEEEEEEEEEEETTTE-
T ss_pred             ceEEEEEEECCCHHHHHHHhCCHHH-HHhcCCCCCCce-eeEEEeCcccCCEEEEEEECCCCCEEEEEEEEEEEcCCcE-
Confidence            57899999999999999999 8876 78887421  11 111234433444433443 233433346678888988776 


Q ss_pred             EEEEEEe---ccccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHHHhHHHHHHHHHHHHHHHHhhCC
Q 031431           80 LKYSVIE---GNDLADYKLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQANP  155 (159)
Q Consensus        80 ~~y~v~e---g~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~~~~~~~~~~~~k~le~~l~~~~  155 (159)
                      +.|+..-   |..     ......+++|.+.+ ++|.++.+-..-+..+.... +.+.   ++-..++..|++||....
T Consensus        86 lv~t~~~~~~~~~-----~~~s~vt~~l~~~~-~gT~ltl~~~~~~~~~~~~~-~~~~---~GW~~~L~~L~~~le~~~  154 (166)
T 3put_A           86 IIYAYEMKLGQTR-----ISASLVTVAFDVEP-SGTRMVFTEQVVFLDGYGDN-GARL---QGTEIGLDNLELFLVRET  154 (166)
T ss_dssp             EEEEEEEEETTEE-----EEEEEEEEEEEECS-SSEEEEEEEEEEEETTCCCT-THHH---HHHHHHHHHHHHHHHHHC
T ss_pred             EEEEEEecCCCCC-----CCceEEEEEEEECC-CCEEEEEEEEecCccchhhH-HHHH---HHHHHHHHHHHHHHhcCC
Confidence            5665431   211     11234667778875 57999998776543321111 2233   455678888888887654

>2ldk_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Arthrobacter aurescens}

Probab=98.85  E-value=6.4e-07  Score=65.67  Aligned_cols=144  Identities=6%  Similarity=0.073  Sum_probs=86.2

Q ss_pred             EEEEEEEEEcCCHHHHHhhh-cCCCCcccccCC-ceeEEEEEcCCCCCCcEEEEEEe-cCCceeEEEEEEEEEecccceE
Q 031431            4 VTYESEETYAVPPARMFNAL-ASDNLPSKIFPD-VVKNVEVLEGNGGPGSIKKFTIV-EGGQVKYAKHKIEEEDKVNLKL   80 (159)
Q Consensus         4 ~~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~-~v~s~~~~eG~g~~GsvR~~~~~-~g~~~~~~kErl~~~D~~~~~~   80 (159)
                      .+++.++.|+||+++||+++ |... +++|.+. -+. +...+++-.+|..-.+.+. +++......-++.++++.++ +
T Consensus        12 ~~i~~~~~i~Ap~e~Vw~altdp~~-~~~W~~p~~~~-~~~~~~d~~~Gg~~~~~~~~~~g~~~~~~~~v~e~~p~~r-l   88 (172)
T 2ldk_A           12 LSFSIVAEFDADVKRVWAIWEDPRQ-LERWWGPPTWP-ATFETHEFTVGGKAAYYMTGPDGTKARGWWQFTTIEAPDH-L   88 (172)
T ss_dssp             TEEEEEEEESSCHHHHHHHHHCHHH-HHTTSSCTTSC-EEEEEECCSTTCEEEEEEECTTSCEEEEEEEEEEECSSSE-E
T ss_pred             ceEEEEEEeCCCHHHHHHHhCCHHH-HHhccCCCCcc-cceEEEeecCCCEEEEEEECCCCCEEeeEEEEEEEcCCCE-E
Confidence            47899999999999999999 8876 6777542 222 2223455455655444443 23433346778888988766 5


Q ss_pred             EEEEEecc----ccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHHH-hHHHHHHHHHHHHHHHHhhCC
Q 031431           81 KYSVIEGN----DLADYKLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAK-AGKERVLGVVKGVEAYLQANP  155 (159)
Q Consensus        81 ~y~v~eg~----~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~~-~~~~~~~~~~k~le~~l~~~~  155 (159)
                      .|+....+    +.....  ..+.+++|.|.+ ++|.++++..+.+..   .-+..+. ...+.-..++..|.++|.+.+
T Consensus        89 ~~~~~~~~~~g~p~~~~~--~~~v~~~l~~~~-~gT~lt~~~~~~~~~---~~~~~~~~~~~~Gw~~~L~~L~~~le~~~  162 (172)
T 2ldk_A           89 EFDDGFADEHGAPVDELG--VTHATVKLEPLE-NRTRMTIISTFESEE---QMQKMAEMGMEEGMREAIEQIDAVLSEPA  162 (172)
T ss_dssp             EEEEEEBCSSCCBCTTTC--EEEEEEEEEEET-TEEEEEEEEEESCHH---HHHHHHHHTHHHHHHHHHHHHHHHHTCCS
T ss_pred             EEEEeecCCCCCccCCCc--cEEEEEEEEEcC-CCEEEEEEEEcCCHH---HHHHHHHhhHHHHHHHHHHHHHHHHHHhH
Confidence            77754322    111101  234566778875 479999998753210   0011111 123455778888888887654


Q ss_pred             C
Q 031431          156 D  156 (159)
Q Consensus       156 ~  156 (159)
                      .
T Consensus       163 ~  163 (172)
T 2ldk_A          163 N  163 (172)
T ss_dssp             S
T ss_pred             H
Confidence            3

>3q64_A MLL3774 protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.50A {Mesorhizobium loti}

Probab=98.83  E-value=2.1e-07  Score=67.99  Aligned_cols=135  Identities=16%  Similarity=0.111  Sum_probs=82.3

Q ss_pred             EEEEEEEEEcCCHHHHHhhh-cCCCCcccccCCc----eeEEEEEcCCCCCCcEEEEEEe-cCCceeEEEEEEEEEeccc
Q 031431            4 VTYESEETYAVPPARMFNAL-ASDNLPSKIFPDV----VKNVEVLEGNGGPGSIKKFTIV-EGGQVKYAKHKIEEEDKVN   77 (159)
Q Consensus         4 ~~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~----v~s~~~~eG~g~~GsvR~~~~~-~g~~~~~~kErl~~~D~~~   77 (159)
                      .++..++.|+||+++||+++ |... +++|.+..    +..+   +++-.+|..-.+.+. ++|....+.=++.++++.+
T Consensus         9 ~~i~~~r~i~Ap~e~Vw~altdp~~-~~~W~~~~~g~~~~~~---~~d~~~Gg~~~~~~~~~~G~~~~~~g~v~e~~p~~   84 (162)
T 3q64_A            9 STFIIERLYPAPPSKVFFALGNADA-KRRWFTDPDNPMPGRF---EMDFRVGGKEVNAGGPKDGPIHVYTATYQDIVPDQ   84 (162)
T ss_dssp             EEEEEEEEESSCHHHHHHHHHCHHH-HHHHSSCTTSCCGGGC---EECCSTTCEEEEEECCTTSCCEEEEEEEEEEETTT
T ss_pred             ceEEEEEEeCCCHHHHHHHHCCHHH-HhhcCCCCCCccceEE---EECCccCCEEEEEEECCCCCEEEEEEEEEEEcCCC
Confidence            57899999999999999999 9886 78888542    1112   233334444444443 3333235667888898877


Q ss_pred             ceEEEEEE---eccccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHHHhHHHHHHHHHHHHHHHHhh
Q 031431           78 LKLKYSVI---EGNDLADYKLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQA  153 (159)
Q Consensus        78 ~~~~y~v~---eg~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~~~~~~~~~~~~k~le~~l~~  153 (159)
                      + +.|+..   +|..     ......+++|.|.++ +|.++++-+.-+..+.. ..+.+.   ++-..++..|++||..
T Consensus        85 r-l~~~~~~~~~~~~-----~~~s~v~~~l~~~~~-gT~lt~~~~~~~~~~~~-~~~~~~---~GW~~~L~~L~~~le~  152 (162)
T 3q64_A           85 R-IVYSYDMLFGETR-----ISVSLATIQLFAEGE-GTRLVLTEQGAFLDGHD-TPSTRE---HGTGVLLDLLDAFLDK  152 (162)
T ss_dssp             E-EEEEEEEEETTEE-----EEEEEEEEEEEEETT-EEEEEEEEEEEEETTSS-CHHHHH---HHHHHHHHHHHHHHHH
T ss_pred             E-EEEEEEecCCCCC-----CCceEEEEEEEEcCC-CEEEEEEEEecCccchh-HHHHHH---HHHHHHHHHHHHHHhh
Confidence            6 566643   2221     122446677788754 69999998764332211 122333   4556677777777653

>3pu2_A Uncharacterized protein; SRPBCC superfamily, PSI-biology, NESG, RHR263, structural GE protein structure initiative; HET: MSE; 2.61A {Rhodobacter sphaeroides}

Probab=98.81  E-value=5.6e-07  Score=65.92  Aligned_cols=140  Identities=11%  Similarity=0.044  Sum_probs=83.7

Q ss_pred             EEEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEe-cCCceeEEEEEEEEEecccceEE
Q 031431            4 VTYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIV-EGGQVKYAKHKIEEEDKVNLKLK   81 (159)
Q Consensus         4 ~~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~-~g~~~~~~kErl~~~D~~~~~~~   81 (159)
                      .+++.++.|+||+++||+++ |... +++|.+..--.+...+++-.+|..-.+.+. ++|..-.+.-++.++++.++ +.
T Consensus        13 ~~i~~~~~i~Ap~e~Vw~altdp~~-~~~W~~~~~~~~~~~~~d~~~Gg~~~~~~~~~~G~~~~~~g~v~e~~p~~r-l~   90 (164)
T 3pu2_A           13 TRLEFRRHFAATPEQLWAALTSPAL-LPAWLFARGWPMTECVFEPHKGGLIRQVWTGPEGRTRGLTGRVILAEPPHR-LI   90 (164)
T ss_dssp             TEEEEEEEESSCHHHHHHHHHCTTT-GGGTSCBTTBCEEEEEECCSTTCEEEEEEECGGGCEEEEEEEEEEEETTTE-EE
T ss_pred             ceEEEEEEECCCHHHHHHHhcCHHH-HhhEeCCCCeeeEEEEEeccCCCEEEEEEECCCCCEEEEEEEEEEEcCCCE-EE
Confidence            47899999999999999999 9886 788876321122233455445554444442 33322356668888888776 56


Q ss_pred             EEEEe-ccccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHH-HhHHHHHHHHHHHHHHHHhh
Q 031431           82 YSVIE-GNDLADYKLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQA-KAGKERVLGVVKGVEAYLQA  153 (159)
Q Consensus        82 y~v~e-g~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~-~~~~~~~~~~~k~le~~l~~  153 (159)
                      |+..- ++-.+.    ....+++|+|.++ +|.++++-.|... +  ..+..+ ....++-..++..|++||.+
T Consensus        91 ~t~~~~~~~~~~----~s~vt~~l~~~~~-gT~l~l~~~~~~~-~--~~~~~~~~~~~~GW~~~L~~L~~~l~~  156 (164)
T 3pu2_A           91 HSELYDEDWTGG----ETLVTLQLLPVEG-GTELAMAVDYATP-E--ARDAVAASAMATEMEEAYRHLDVMLAA  156 (164)
T ss_dssp             EEEBCC---CCS----CEEEEEEEEEETT-EEEEEEEEECSST-T--HHHHHHTSTHHHHHHHHHHHHHHHHHH
T ss_pred             EEEeccCCCCCC----CEEEEEEEEEcCC-CEEEEEEEEeCCH-H--HHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            76531 211112    1345667788754 6999998875211 0  001111 12234557788888888875

>2lgh_A Uncharacterized protein; AHSA1, start domain, COG3832, PF08327, HSP90, heat shock, ST genomics, PSI-biology; NMR {Aeromonas hydrophila subsp}

Probab=98.80  E-value=2.7e-07  Score=66.10  Aligned_cols=130  Identities=12%  Similarity=0.098  Sum_probs=80.4

Q ss_pred             EEEEEEEEEcCCHHHHHhhh-cCCCCcccc-cCC-ceeEEEEEcCCCCCCcEEEEEEe-cCCc-eeEEEEEEEEEecccc
Q 031431            4 VTYESEETYAVPPARMFNAL-ASDNLPSKI-FPD-VVKNVEVLEGNGGPGSIKKFTIV-EGGQ-VKYAKHKIEEEDKVNL   78 (159)
Q Consensus         4 ~~~~~e~~i~apa~~vW~~~-d~~~~lp~~-~P~-~v~s~~~~eG~g~~GsvR~~~~~-~g~~-~~~~kErl~~~D~~~~   78 (159)
                      ++++.++.|+||+++||+++ |... +++| .+. -+ .+...+++-.+|..-.+.+. ++|. .-.+.-++.++++.++
T Consensus         1 m~i~~~~~i~Ap~e~Vw~altdp~~-~~~W~~~p~~~-~~~~~~~d~~~Gg~~~~~~~~~~G~~~~~~~g~v~e~~p~~~   78 (144)
T 2lgh_A            1 MKISIEAHIEQEIEAVWWAWNDPDC-IARWNAASSDW-HTTGSRVDLVVGGRFCHHMAAKDGSAGFDFTGTFTRVEAPTR   78 (144)
T ss_dssp             CEEEEEEEESSCHHHHHHHHHCHHH-HTTSSSCSTTE-EEEEEEECCSTTCEEEEEEEETTSSCEEEEEEEEEEEETTTE
T ss_pred             CEEEEEEEeCCCHHHHHHHhCCHHH-HhccCCCCCCc-ccceEEECCCCCCEEEEEEECCCCCceEEeEEEEEEEeCCCE
Confidence            36889999999999999999 9886 7888 542 22 12223455344444344443 3333 2345667888988766


Q ss_pred             eEEEEEEeccccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHHHhHHHHHHHHHHHHHHHHhhC
Q 031431           79 KLKYSVIEGNDLADYKLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQAN  154 (159)
Q Consensus        79 ~~~y~v~eg~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~~~~~~~~~~~~k~le~~l~~~  154 (159)
                       +.|+. .|    .     .+.+++|.|.+ ++|.++.+..+.  +.  ...+.   ..+.-..++..|+++|...
T Consensus        79 -l~~~~-~~----~-----~~~~~~l~~~~-~gT~l~~~~~~~--~~--~~~~~---~~~Gw~~~L~~L~~~le~~  135 (144)
T 2lgh_A           79 -LSFVM-DD----G-----REVDVQFASEP-GGTWVQETFDAE--TS--HTPAQ---QQAGWQGILDNFKRYVEAA  135 (144)
T ss_dssp             -EEEEE-TT----C-----CEEEEEEEEET-TEEEEEEEEECC--TT--SCHHH---HHHHHHHHHHHHHHHHHHS
T ss_pred             -EEEEe-cC----C-----cEEEEEEEEcC-CCEEEEEEEECC--CH--HHHHH---HHHHHHHHHHHHHHHHhhC
Confidence             67875 23    1     23466678874 478888776652  11  12222   2345567788888887654

>1xfs_A NC_840354, conserved hypothetical protein; structural genomics, protein structure initiative, NESG, ALP protein, PSI; 1.70A {Nitrosomonas europaea} SCOP: d.129.3.5

Probab=98.80  E-value=2.6e-07  Score=68.25  Aligned_cols=140  Identities=13%  Similarity=0.054  Sum_probs=83.8

Q ss_pred             EEEEEEEEEcCCHHHHHhhh-cCCCCcccccCC-ceeEEEEEcCCCCCCcEEEEEEec-CCceeEEEEEEEEEecccceE
Q 031431            4 VTYESEETYAVPPARMFNAL-ASDNLPSKIFPD-VVKNVEVLEGNGGPGSIKKFTIVE-GGQVKYAKHKIEEEDKVNLKL   80 (159)
Q Consensus         4 ~~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~-~v~s~~~~eG~g~~GsvR~~~~~~-g~~~~~~kErl~~~D~~~~~~   80 (159)
                      .++..+++|+||+++||+++ |... +++|.+. -++ +...+++-.+|..-.+.+.. ++......-++.++++.++ +
T Consensus        10 ~~i~~~r~i~Ap~e~Vw~altdp~~-~~~W~~p~~~~-~~~~~~d~~~Gg~~~~~~~~~~G~~~~~~~~v~e~~p~~r-l   86 (178)
T 1xfs_A           10 LDLMLKRELAVPVNLVWRGLTEPEL-LKKWFVPKPWS-ISDCRVDLRPGGEFYTVMQDPEGNKFPNSGCFLEVTDEKR-L   86 (178)
T ss_dssp             TEEEEEEEESSCHHHHHHHHHCHHH-HTTTSSCTTCE-EEEEEECCSTTCEEEEEEECTTCCEEEEEEEEEEEETTTE-E
T ss_pred             ceEEEEEEecCCHHHHHHHhCCHHH-HhhCCCCCCee-eeEEEEeeECCcEEEEEEECCCCCEEEEEEEEEEEeCCCE-E
Confidence            46889999999999999999 9886 7888653 222 22344555566665555542 3333346678888988766 5


Q ss_pred             EEEEE-ec--cccC-----CCce--eEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHHHh-----HHHHHHHHHH
Q 031431           81 KYSVI-EG--NDLA-----DYKL--EKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAKA-----GKERVLGVVK  145 (159)
Q Consensus        81 ~y~v~-eg--~~l~-----~Y~~--~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~~~-----~~~~~~~~~k  145 (159)
                      .|+.. .+  ....     ....  ...+.+++|+|.+ ++|.++++.+|..       ++....     ..+.-..++.
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~l~~~~-~gT~l~~~~~~~~-------~~~~~~~~~~~~~~Gw~~~l~  158 (178)
T 1xfs_A           87 IWTSALVKNYRPAVPATTSDKECAHIVMTAVIELQPTS-SGTRYTACAMHNT-------PGQRKLHEEMGFHEGWGTTIT  158 (178)
T ss_dssp             EEESSEEGGGEECCC-----------CCEEEEEEEECS-SSEEEEEEEECSS-------HHHHHHHHTTTHHHHHHHHHH
T ss_pred             EEEEEEcCCCCccccccccccccccccEEEEEEEEECC-CCEEEEEEEEcCC-------HHHHHHHHhhhHHHHHHHHHH
Confidence            67643 11  1110     0000  0134566778875 4799999887521       111111     1345567778


Q ss_pred             HHHHHHhhC
Q 031431          146 GVEAYLQAN  154 (159)
Q Consensus       146 ~le~~l~~~  154 (159)
                      .|.++|.+.
T Consensus       159 ~L~~~le~~  167 (178)
T 1xfs_A          159 QLEELLKQE  167 (178)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhh
Confidence            888877653

>3eli_A AHSA1, AHA1 domain protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.80A {Silicibacter pomeroyi} SCOP: d.129.3.5

Probab=98.80  E-value=4.5e-07  Score=65.29  Aligned_cols=138  Identities=11%  Similarity=-0.011  Sum_probs=80.4

Q ss_pred             EEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEE--EEcCCCCCCcEEEEEEe-cCCceeEEEEEEEEEecccceE
Q 031431            5 TYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVE--VLEGNGGPGSIKKFTIV-EGGQVKYAKHKIEEEDKVNLKL   80 (159)
Q Consensus         5 ~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~--~~eG~g~~GsvR~~~~~-~g~~~~~~kErl~~~D~~~~~~   80 (159)
                      +++.++.|+||+++||+++ |... +++|.+..--.+.  ..+++-.+|..-.+.+. ++|..-...-++.++++.++ +
T Consensus         3 ~i~~~r~i~Ap~e~Vw~altdp~~-~~~W~~~~~~~~~~~~~~~d~~~Gg~~~~~~~~~~G~~~~~~g~v~e~~p~~~-l   80 (152)
T 3eli_A            3 DLRLEREFAVAPEALFAWVSDGAK-LLQWWGPEGLHVPADQHDLDFTRLGPWFSVMVNGEGQRYKVSGQVTHVKPPQS-V   80 (152)
T ss_dssp             EEEEEEEESSCHHHHHHHTTCHHH-HHHHCSSTTCBCCTTSBCCCCSSSEEEEEEEECTTCCEEEEEEEEEEEETTTE-E
T ss_pred             eEEEEEEECCCHHHHHHHHcCHHH-HhhccCCCCcccccceeEEcccCCcEEEEEEECCCCCEEEEEEEEEEEcCCCE-E
Confidence            5888999999999999999 8876 7888653111111  12344345555445543 33333356678888988766 5


Q ss_pred             EEEEEeccccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHHHhHHHHHHHHHHHHHHHHh
Q 031431           81 KYSVIEGNDLADYKLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQ  152 (159)
Q Consensus        81 ~y~v~eg~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~~~~~~~~~~~~k~le~~l~  152 (159)
                      .|+....+.-.. .......+++|.|.++ +|.++++-.  ..    ++.+......++-..++..|++||.
T Consensus        81 ~~~~~~~~~~~~-~~~~~~v~~~l~~~~~-gT~l~l~~~--~~----~~~~~~~~~~~GW~~~L~~L~~~l~  144 (152)
T 3eli_A           81 GFTWGWHDDDDR-RGAESHVMFIVEPCAK-GARLILDHR--EL----GDDEMSLRHEEGWTSSLRKLAAELA  144 (152)
T ss_dssp             EEEEEEECTTSC-EEEEEEEEEECCBC---CEEEEEEEE--SC----SCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEeecCCCCC-CCCcEEEEEEEEECCC-CEEEEEEEc--cC----CCHHHHHHHHHHHHHHHHHHHHHHh
Confidence            676543221111 1123456677788754 688887532  11    1223333344555778888888875

>2lak_A AHSA1-like protein RHE_CH02687; NESG, structural genomics, northeast structural genomics CON PSI-biology, structure genomics, unknown function; NMR {Rhizobium etli}

Probab=98.75  E-value=4e-08  Score=71.40  Aligned_cols=131  Identities=17%  Similarity=0.205  Sum_probs=81.5

Q ss_pred             EEEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEecCCceeEEEEEEEEEecccceEEE
Q 031431            4 VTYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQVKYAKHKIEEEDKVNLKLKY   82 (159)
Q Consensus         4 ~~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~y   82 (159)
                      .+++.+++|+||+++||+++ |... +++|+|. ..+.     +-.+|..-.+.+. |..  .+..++.++++.++ +.|
T Consensus         9 ~~i~~~~~i~Ap~e~Vw~altdp~~-~~~W~~~-~~~~-----~~~~Gg~~~~~~~-g~~--~~~~~v~e~~p~~~-l~~   77 (160)
T 2lak_A            9 FVVRREAHLAAPPAAVFALMTDPEK-ILRWMGT-EAEV-----EPEPGGLYLVNVT-GAR--FARGSFREVVPVHR-LAY   77 (160)
T ss_dssp             CEEEEEEEESSCHHHHHHHHHCHHH-HHHTSCS-SEEE-----SCSTTCCEEECSS-TTC--CSSCCEEEEETTTE-EEE
T ss_pred             ceEEEEEEeCCCHHHHHHHhcChHH-HhhhCCC-ccee-----eccCCCEEEEEEe-CCc--eEEEEEEEEcCCCE-EEE
Confidence            57999999999999999999 9887 8899886 3232     2223433334444 322  44557888887655 677


Q ss_pred             EEEeccc--cCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHHHhHHHHHHHHHHHHHHHHhhCC
Q 031431           83 SVIEGND--LADYKLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQANP  155 (159)
Q Consensus        83 ~v~eg~~--l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~~~~~~~~~~~~k~le~~l~~~~  155 (159)
                      +...++.  ... ..  .+.+++|.|.+ ++|.++|+.+-.+      ..+......+....++..|.++|.+.+
T Consensus        78 ~~~~~~~~~~~~-~~--~~~~~~l~~~~-~gT~l~~~~~~~~------~~~~~~~~~~gw~~~L~~Lk~~le~~~  142 (160)
T 2lak_A           78 SFGWDGSEVVPP-GS--SLVEIDLIEQG-GGTLLRLTHSGLP------SAEQCAGHEEGWAHYLGRLTEVAAGRD  142 (160)
T ss_dssp             CCCCCSSSCCCT-TS--CEEEEEEEECS-SSEEEEEEEECCC------SHHHHHHHHHHHHHHHHHHHHHHHCSS
T ss_pred             EEEecCCCCCCC-Cc--EEEEEEEEECC-CCEEEEEEEeCCC------CHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            6543321  111 11  23466678875 4799999865111      122233334456778888888886643

>3q63_A MLL2253 protein; structural genomics, PSI-biology, protein structure initiati alpha-beta protein, unknown, structure genomics; 2.00A {Mesorhizobium loti}

Probab=98.71  E-value=4.7e-07  Score=65.39  Aligned_cols=132  Identities=12%  Similarity=0.084  Sum_probs=80.4

Q ss_pred             ccEEEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEecCCceeEEEEEEEEEecccceE
Q 031431            2 GVVTYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQVKYAKHKIEEEDKVNLKL   80 (159)
Q Consensus         2 ~~~~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~   80 (159)
                      ...+++.++.|+||+++||+++ |... +++|.|.    +   +++-.+|..-.+. .+.+  ..+.=++.++++.++ +
T Consensus         7 ~~~~i~~~~~i~Ap~e~Vw~altdp~~-~~~W~~~----~---~~~~~~Gg~~~~~-~~~g--~~~~g~v~e~~p~~~-l   74 (151)
T 3q63_A            7 ENRTVVVERQISHPPEKLWRALTQPHL-IEEWLMK----N---DFKPAVGHRFNIS-ADWG--GVLDCEVLAVEPNKT-L   74 (151)
T ss_dssp             --CEEEEEEEESSCHHHHHHHHHCHHH-HHHHSCE----E---CCCSSTTCEEEEE-CTTS--CEEEEEEEEEETTTE-E
T ss_pred             CCCeEEEEEEeCCCHHHHHHHHcCHHH-HHhhcCc----C---CCccCCCCEEEEE-CCCC--CEEEEEEEEEeCCCE-E
Confidence            3467899999999999999999 9876 8899983    2   3443455554444 2222  246667888888776 5


Q ss_pred             EEEEEecc--ccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHHHhHHHHHHHHHHHHHHHHhh
Q 031431           81 KYSVIEGN--DLADYKLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQA  153 (159)
Q Consensus        81 ~y~v~eg~--~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~~~~~~~~~~~~k~le~~l~~  153 (159)
                      .|+...++  ....   ...+.+++|.|.++ +|.++++-..-+..+    ........++-..++..|++||..
T Consensus        75 ~~~~~~~~~~~~~~---~~s~v~~~l~~~~~-gT~l~l~~~g~~~~~----~~~~~~~~~GW~~~L~~L~~~le~  141 (151)
T 3q63_A           75 SYTWNLAHQDPAFD---LRSVVTFTLTPTPT-GTHLRMEQSGFRPDQ----RRAYGGAKMGWPQFFEKLEQLLDR  141 (151)
T ss_dssp             EEECBBCCSSTTTC---BCCEEEEEEEECSS-SEEEEEEEECCCTTC----HHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             EEEEecCCCCCCCC---CCeEEEEEEEEcCC-CEEEEEEEeCCCcch----HHHHHhhhhCHHHHHHHHHHHHhc
Confidence            77654322  1111   11345667788754 699888755222111    112222334556778888887754

>1xn5_A BH1534 unknown conserved protein; structural genomics, protein structure initiative, PSI, BACI halodurans protein BH1534, alpha + beta; NMR {Bacillus halodurans} SCOP: d.129.3.5

Probab=98.69  E-value=1.6e-07  Score=67.28  Aligned_cols=93  Identities=14%  Similarity=0.203  Sum_probs=65.6

Q ss_pred             EEEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEecCCceeEEEEEEEEEecccceEEE
Q 031431            4 VTYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQVKYAKHKIEEEDKVNLKLKY   82 (159)
Q Consensus         4 ~~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~y   82 (159)
                      .+++.+++|+||+++||+++ |... +++|+|. .      +++-.+|..-.+.+ +++   .+.-++.++++.++ +.|
T Consensus         5 ~~i~~~~~i~Ap~e~Vw~altd~~~-~~~W~~~-~------~~~~~~Gg~~~~~~-~~g---~~~~~v~e~~p~~~-l~~   71 (146)
T 1xn5_A            5 PDIKKEVRFNAPIEKVWEAVSTSEG-LAFWFME-N------DLKAETGHHFHLQS-PFG---PSPCQVTDVERPIK-LSF   71 (146)
T ss_dssp             CCEEEEEEESSCHHHHHHHTTSHHH-HHTTSCC-B------CCCSCTTCEEEEEC-SSC---EEEEEEEEEETTTE-EEE
T ss_pred             cEEEEEEEEcCCHHHHHHHHhChhH-HHHhcCC-C------CCCccCCCEEEEEe-cCC---ceEEEEEEEeCCcE-EEE
Confidence            57899999999999999999 9886 8999885 2      34434566555555 333   36778888988765 677


Q ss_pred             EEEeccccCCCceeEEEEEEEEEECCCCCeEEEEEEE
Q 031431           83 SVIEGNDLADYKLEKISFEHQWRASPNGGSICKTICK  119 (159)
Q Consensus        83 ~v~eg~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~  119 (159)
                      +.. +    . .   ...+++|+|.++ +|.++++.+
T Consensus        72 ~~~-~----~-~---~~~~~~l~~~~~-gT~l~~~~~   98 (146)
T 1xn5_A           72 TWD-T----D-G---WSVTFHLKEEEN-GTIFTIVHS   98 (146)
T ss_dssp             EET-T----T-T---EEEEEEEEECSS-SEEEEEEEE
T ss_pred             EEe-C----C-C---EEEEEEEEEcCC-CEEEEEEEE
Confidence            764 2    1 1   234566788754 699988765

>3uid_A Putative uncharacterized protein; SRPBCC superfamily, beta sandwich, function, structural genomics, TB structural genomics conso TBSGC; 1.57A {Mycobacterium smegmatis} SCOP: d.129.3.0

Probab=98.68  E-value=1.3e-06  Score=64.44  Aligned_cols=142  Identities=15%  Similarity=0.183  Sum_probs=82.4

Q ss_pred             EEEEEEEEEcCCHHHHHhhh-cCCCCccccc-CCceeEEEEEcCCCCCCcEEEEEE-ecCCceeEEEEEEEEEecccceE
Q 031431            4 VTYESEETYAVPPARMFNAL-ASDNLPSKIF-PDVVKNVEVLEGNGGPGSIKKFTI-VEGGQVKYAKHKIEEEDKVNLKL   80 (159)
Q Consensus         4 ~~~~~e~~i~apa~~vW~~~-d~~~~lp~~~-P~~v~s~~~~eG~g~~GsvR~~~~-~~g~~~~~~kErl~~~D~~~~~~   80 (159)
                      .++..++.|+||+++||+++ |... +.+|. |.-+. +...+.+-.+|..-.+.+ .++|..-...-++.++++.++ +
T Consensus        13 ~~i~~~r~i~Ap~e~Vw~a~Tdpe~-l~~W~~p~~~~-~~~~~~d~r~GG~~~~~~~~~~G~~~~~~g~~~ev~p~~r-l   89 (168)
T 3uid_A           13 LTLTITAEFAAPVTRIWQIYADPRQ-LEKVWGPPSHP-ATVVDHDLRPGGRVTYFMTGPDGEKYAGYWEITAVDEPHS-F   89 (168)
T ss_dssp             TEEEEEEEESSCHHHHHHHHHSHHH-HHHHHCCTTSC-CEEEEECCSTTCEEEEEEECTTSCEEEEEEEEEEEETTTE-E
T ss_pred             CEEEEEEEEcCCHHHHHHHhCCHHH-HhhEeCCCCee-eeEEEEcccCCcEEEEEEECCCCCEEeeEEEEEEEeCCcE-E
Confidence            35889999999999999999 8776 67764 43221 222344533443333343 233432346678888988776 5


Q ss_pred             EEEEEe----ccccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHHH-hHHHHHHHHHHHHHHHHhhC
Q 031431           81 KYSVIE----GNDLADYKLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAK-AGKERVLGVVKGVEAYLQAN  154 (159)
Q Consensus        81 ~y~v~e----g~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~~-~~~~~~~~~~k~le~~l~~~  154 (159)
                      .|+..-    |.+...-.  ....+++|.+.+ ++|.++++..|...   +..+..+. ...++-...+..|++||.+.
T Consensus        90 v~t~~~~~~~g~p~~~~~--~s~vt~~l~~~~-~gT~lt~~~~~~~~---~~~~~~~~~g~~~GW~~~L~~L~~~l~~~  162 (168)
T 3uid_A           90 SFLDGFADEDFNPNTDLP--VSTNVYTFTEHD-GGTRATYVGTYASA---EALQQVLDMGVIEGASSAINQIDALLTAT  162 (168)
T ss_dssp             EEEEEEECTTSCBCSSCC--CEEEEEEEEEET-TEEEEEEEEECSCH---HHHHHHHHTTHHHHHHHHHHHHHHHTCSC
T ss_pred             EEEEeeccCCCCcCCCCC--cEEEEEEEEECC-CCEEEEEEEecCCH---HHHHHHHHhcHHHHHHHHHHHHHHHHHhh
Confidence            666432    32211101  134566778874 57999988544211   00011111 13456678899999988764

>2lf2_A Uncharacterized protein; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics consortium; NMR {Cytophaga hutchinsonii}

Probab=98.64  E-value=2.4e-06  Score=63.03  Aligned_cols=137  Identities=9%  Similarity=0.050  Sum_probs=81.5

Q ss_pred             EEEEEEEEEcCCHHHHHhhh-cCCCCcccccC-CceeEEEEEcCCCCCCcEEEEEEe-cCCceeEEEEEEEEEecccceE
Q 031431            4 VTYESEETYAVPPARMFNAL-ASDNLPSKIFP-DVVKNVEVLEGNGGPGSIKKFTIV-EGGQVKYAKHKIEEEDKVNLKL   80 (159)
Q Consensus         4 ~~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P-~~v~s~~~~eG~g~~GsvR~~~~~-~g~~~~~~kErl~~~D~~~~~~   80 (159)
                      .+++.++.|+||+++||+++ |... +++|.+ .-+. +...+++-.+|..-.+.+. +++......-++.++++.++ +
T Consensus        16 ~~i~~~~~i~Ap~e~Vw~a~tdpe~-~~~W~~p~~~~-~~~~~~d~~~Gg~~~~~~~~~~G~~~~~~g~v~e~~p~~r-l   92 (175)
T 2lf2_A           16 KTITIKREFAAVRAIVWEAFTRAEI-LDQWWAPKPWK-AKTKSMDFKEGGTWLYAMVGPNGEEHWSICEYAIIKPIER-F   92 (175)
T ss_dssp             TEEEEEEEESSCHHHHHHHHTCHHH-HHHSSSSSSSE-EEEEEECCSTTCEEEEEEECSSSCEEEEEEEECCCCSSSE-E
T ss_pred             ceEEEEEEEcCCHHHHHHHhCCHHH-HhhCcCCCCcc-ceEEEEeccCCCEEEEEEECCCCCEEEeEEEEEEEcCCCE-E
Confidence            46889999999999999999 9886 788764 2221 2233455445554444443 34433346678888888776 5


Q ss_pred             EEEEEec----cccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHHHh-----HHHHHHHHHHHHHHHH
Q 031431           81 KYSVIEG----NDLADYKLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAKA-----GKERVLGVVKGVEAYL  151 (159)
Q Consensus        81 ~y~v~eg----~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~~~-----~~~~~~~~~k~le~~l  151 (159)
                      .|+..-+    .+.....  ..+.+++|+|.+ ++|.++.+..|.       +++....     ..+.-...+..|++||
T Consensus        93 ~~t~~~~~~~g~p~~~~~--~~~v~~~l~~~~-~gT~l~~~~~~~-------~~~~~~~~~~~~~~~Gw~~~L~~L~~~l  162 (175)
T 2lf2_A           93 TGKDGFTDASGKLNTEMP--RSNWDMRFIDKG-EITEVQYHISYD-------DVAQLEATIQMGFKEGITMAMENLDELL  162 (175)
T ss_dssp             EEEEEEESSTTCCCTTSC--CEEEEEEEEEET-TEEEEEEEEECS-------CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEecCCCCCcCCCCC--cEEEEEEEEECC-CCEEEEEEEecC-------CHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            6664322    1111101  134566778874 478888886641       2222221     2344566778888887


Q ss_pred             hh
Q 031431          152 QA  153 (159)
Q Consensus       152 ~~  153 (159)
                      ..
T Consensus       163 e~  164 (175)
T 2lf2_A          163 VS  164 (175)
T ss_dssp             HH
T ss_pred             Hh
Confidence            54

>2kew_A Uncharacterized protein YNDB; start domain, resonance assignments, lipid binding, structural genomics, unknown FU PSI-2; NMR {Bacillus subtilis subsp} PDB: 2kte_A

Probab=98.58  E-value=4.4e-08  Score=70.87  Aligned_cols=127  Identities=10%  Similarity=0.026  Sum_probs=77.2

Q ss_pred             EEEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEecCCceeEEEEEEEEEecccceEEE
Q 031431            4 VTYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQVKYAKHKIEEEDKVNLKLKY   82 (159)
Q Consensus         4 ~~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~y   82 (159)
                      .+++.++.|+||+++||+++ |... +++|+|. +      +++-.+|....+.+. ++.   +.-++.++++.++ +.|
T Consensus        10 ~~i~~~~~i~Ap~e~Vw~altd~~~-~~~W~~~-~------~~~~~~Gg~~~~~~~-~g~---~~~~v~e~~p~~~-l~~   76 (152)
T 2kew_A           10 PDITKSITLEAPIQKVWETVSTSEG-IAKWFMP-N------DFQLKEGQEFHLQSP-FGP---SPCKVLAVQAPTE-LSF   76 (152)
T ss_dssp             CCEEEEEEECSCHHHHHHHSSSSHH-HHHHHCS-C------CCCSCSSCCBCSSSS-CCS---CCBEEEEEETTTE-EEE
T ss_pred             cEEEEEEEECCCHHHHHHHHhCHHH-HHHhcCC-C------CCCCCCCCEEEEEec-CCc---eEEEEEEEeCCcE-EEE
Confidence            46999999999999999999 9886 8999885 1      344334544334442 232   4557888888765 677


Q ss_pred             EEEeccccCCCceeEEEEEEEEEECCCCCeEEEEEEE-EEEcC-CCCC----CHHHHHhHHHHHHHHH-HHHHHHHhh
Q 031431           83 SVIEGNDLADYKLEKISFEHQWRASPNGGSICKTICK-LHAKG-EVEV----TEEQAKAGKERVLGVV-KGVEAYLQA  153 (159)
Q Consensus        83 ~v~eg~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~-~e~~~-~~~~----~~~~~~~~~~~~~~~~-k~le~~l~~  153 (159)
                      +...+    .     .+.+++|+|.++ +|.++++-+ |...+ +.+.    .........++-..++ ..|.++|..
T Consensus        77 ~~~~~----~-----~~~~~~l~~~~~-gT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GW~~~l~~~L~~~le~  144 (152)
T 2kew_A           77 EWDTE----G-----WVVTFQLEDLGE-KTGFTLIHSGWKEPNQVIGKANEKSSVVRGKMDGGWTGIVNERLRKAVEE  144 (152)
T ss_dssp             ECTTS----C-----CEEEEEEECCSS-CEEEEEEECCSSCCSBCSSSSSSBHHHHHHHHHHHHHHHTTTHHHHHHTC
T ss_pred             EEccC----C-----EEEEEEEEECCC-CEEEEEEEEeccCcccccccccchhHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence            65322    1     234566788754 688887644 32110 1110    1223333344556777 888877754

>2l9p_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Staphylococcus epidermidis}

Probab=98.58  E-value=1.1e-06  Score=64.15  Aligned_cols=144  Identities=11%  Similarity=0.120  Sum_probs=83.9

Q ss_pred             EEEEEEEEEcCCHHHHHhhh-cCCCCcccccCC-ceeEEEEEcCCCCCCcEEEEEEe-cCCceeEEEEEEEEEecccceE
Q 031431            4 VTYESEETYAVPPARMFNAL-ASDNLPSKIFPD-VVKNVEVLEGNGGPGSIKKFTIV-EGGQVKYAKHKIEEEDKVNLKL   80 (159)
Q Consensus         4 ~~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~-~v~s~~~~eG~g~~GsvR~~~~~-~g~~~~~~kErl~~~D~~~~~~   80 (159)
                      .+++.++.|+||+++||+++ |... +++|.+. -+. +...+++-.+|..-.+.+. +++..- +.-++.++++.++ +
T Consensus         8 ~~i~~~~~i~Ap~e~Vw~a~tdpe~-~~~W~~p~~~~-~~~~~~d~~~Gg~~~~~~~~~~G~~~-~~g~v~e~~p~~r-l   83 (164)
T 2l9p_A            8 NKIIFTRTFSAPINKVFDAYTKREL-FEQWFHPQDAS-VTVYDFNATKGGSAFYAIQAPQMISY-TIAEYLQVDAPYY-I   83 (164)
T ss_dssp             SEEEECCEESSCHHHHHHHHHCHHH-HTTTCCCTTCE-EEEEECCCSTTEEEEEEEEETTEEEE-EEEEESCCBTTTE-E
T ss_pred             ceEEEEEEeCCCHHHHHHHhCCHHH-HHhccCCCCce-eeEEEEeccCCCEEEEEEECCCCCEE-EEEEEEEEcCCCE-E
Confidence            47899999999999999999 9886 6777542 222 2334566455654444443 333222 6778888988776 5


Q ss_pred             EEEEEeccc--cCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHHH-hHHHHHHHHHHHHHHHHhhCC
Q 031431           81 KYSVIEGND--LADYKLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAK-AGKERVLGVVKGVEAYLQANP  155 (159)
Q Consensus        81 ~y~v~eg~~--l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~~-~~~~~~~~~~k~le~~l~~~~  155 (159)
                      .|+...++.  .+.-.......+++|++.+ ++|.++.+..|...   ...+..+. ...++-..++..|+++|.+-.
T Consensus        84 ~~t~~~~~~~g~p~~~~~~~~v~~~l~~~~-~gT~l~~~~~~~~~---~~~~~~~~~~~~~Gw~~~L~~L~~~le~~~  157 (164)
T 2l9p_A           84 EYLDYFATSKGEKDTSMPGMHITLNFEEVK-GKTTVTSTSTFPTE---SAAQQAIDMGVETGMNSTLNQLEKLLNQKL  157 (164)
T ss_dssp             EEEEEEEBTTBSCCSSSCCEEEEEEECCCS-SSEEEEEEEECSST---THHHHHHHHTHHHHHHHHHHHHHHHHHSSC
T ss_pred             EEEEEecCCCCCccCCCCceEEEEEEEECC-CCEEEEEEEEcCCH---HHHHHHHHhhHHHHHHHHHHHHHHHHHHhh
Confidence            676543211  1100000134566778764 57998888764321   11111111 123455677888888886643

>2k5g_A Uncharacterized protein; structural genomiccs, protein structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} SCOP: d.129.3.5

Probab=98.56  E-value=8.5e-07  Score=66.68  Aligned_cols=133  Identities=11%  Similarity=0.058  Sum_probs=83.8

Q ss_pred             CccEEEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEecC--------------CceeE
Q 031431            1 MGVVTYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEG--------------GQVKY   65 (159)
Q Consensus         1 m~~~~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g--------------~~~~~   65 (159)
                      |...+++.++.|+||+++||+++ |... +++|.+. .      +++-.+|..-.+.+...              +....
T Consensus        16 ~~~~~i~~~~~i~Ap~e~Vw~altdpe~-~~~W~~~-~------~~d~~~Gg~~~~~~~~~~~~~~~~p~~~~~~g~~~~   87 (191)
T 2k5g_A           16 LDAQSIRFERLLPGPIERVWAWLADADK-RARWLAG-G------ELPRQPGQTFELHFNHAALTAETAPARYAQYDRPIV   87 (191)
T ss_dssp             SCCSSEEEEEEESSSSHHHHHHHHCHHH-HTTTSCC-C------CCCSSTTCEEEEEECGGGSCCSSCCSSCSGGGSCEE
T ss_pred             cCCCeEEEEEEeCCCHHHHHHHHcCHHH-HhhcCCC-C------CCCccCCCEEEEEEcCCccccccCcccccccCCCce
Confidence            34457899999999999999999 9886 7899985 1      34444566666666431              01124


Q ss_pred             EEEEEEEEecccceEEEEEEeccccCCCceeEEEEEEEEEECCCCCeEEEEEEE-EEEcCCCCCCHHHHHhHHHHHHHHH
Q 031431           66 AKHKIEEEDKVNLKLKYSVIEGNDLADYKLEKISFEHQWRASPNGGSICKTICK-LHAKGEVEVTEEQAKAGKERVLGVV  144 (159)
Q Consensus        66 ~kErl~~~D~~~~~~~y~v~eg~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~-~e~~~~~~~~~~~~~~~~~~~~~~~  144 (159)
                      +.-++.++++.++ +.|+...++. ..    ..+.+++|++.++ +|.++++-+ |.   +    .+........-..++
T Consensus        88 ~~g~v~e~~pp~r-l~~~~~~~~~-~~----~~~v~~~l~~~~~-gT~l~~~~~~~~---~----~~~~~~~~~GW~~~L  153 (191)
T 2k5g_A           88 ARHTLLRCEPPRV-LALTWGGGAG-EA----PSEVLFELSEAGE-QVRLVLTHTRLA---D----RAAMLDVAGGWHAHL  153 (191)
T ss_dssp             EEEEEEEEETTTE-EEEECCCCSS-SS----CCEEEEEEEECSS-SEEEEEEEECCC---S----HHHHHHHTTTTTTHH
T ss_pred             eEEEEEEecCCCE-EEEEeecCCC-CC----CEEEEEEEEEcCC-CEEEEEEEecCC---C----HHHHHHHHHhHHHHH
Confidence            5667888888776 6776543321 11    1245667788754 688887765 32   1    122222223446778


Q ss_pred             HHHHHHHhhCC
Q 031431          145 KGVEAYLQANP  155 (159)
Q Consensus       145 k~le~~l~~~~  155 (159)
                      ..|.++|...+
T Consensus       154 ~~L~~~le~~~  164 (191)
T 2k5g_A          154 AVLAGKLAGQA  164 (191)
T ss_dssp             HHHHHHHHTSC
T ss_pred             HHHHHHHCCCC
Confidence            88888887654

>2nn5_A Hypothetical protein EF_2215; structural genomics, APC29336, PSI-2, structure initiative; HET: MSE; 1.45A {Enterococcus faecalis} SCOP: d.129.3.5

Probab=98.52  E-value=1.7e-06  Score=64.89  Aligned_cols=121  Identities=10%  Similarity=0.135  Sum_probs=76.8

Q ss_pred             EEEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEecCCceeEEEEEEEEEecccceEEE
Q 031431            4 VTYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQVKYAKHKIEEEDKVNLKLKY   82 (159)
Q Consensus         4 ~~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~y   82 (159)
                      .+++.+++|+||+++||+++ |... +++|+|. ....+.     .+|..-.+.+..    ....-++.++++.++ +.|
T Consensus        36 ~~i~~~~~i~Ap~e~VW~altdp~~-l~~W~~~-~~~~d~-----~~Gg~~~~~~~~----~~~~~~v~e~~p~~r-l~~  103 (184)
T 2nn5_A           36 IYFGTERAISASPQTIWRYLTETDK-LKQWFPE-LEIGEL-----GVNGFWRFILPD----FEETMPFTDYAEEKY-LGV  103 (184)
T ss_dssp             EEEEEEEEESSCHHHHHHHHHCHHH-HHHHCTT-EEEEEC-----STTCEEEEEETT----EEEEEEEEEEETTTE-EEE
T ss_pred             cEEEEEEEeCCCHHHHHHHHcCHHH-HHHhCCC-cccccc-----CCCCEEEEEEeC----CCceEEEEEecCCCE-EEE
Confidence            46899999999999999999 9886 8999985 332232     233333344432    134557888888775 566


Q ss_pred             EEEeccccCCCceeEEEEEEEEEE-CCCCCeEEEEEEEEEEcCCCCCCHHHHHhHHHHHHHHHHHHHHHHhh
Q 031431           83 SVIEGNDLADYKLEKISFEHQWRA-SPNGGSICKTICKLHAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQA  153 (159)
Q Consensus        83 ~v~eg~~l~~Y~~~~~~~~~~~~p-~~~g~t~v~W~~~~e~~~~~~~~~~~~~~~~~~~~~~~k~le~~l~~  153 (159)
                      +.- +          .+.+++|.| . +++|.++++-.|..  +.......   ....-..++..|.++|..
T Consensus       104 ~~~-~----------~~v~~~l~~~~-~~gT~l~~~~~~~~--g~~~~~~~---~~~GW~~~L~~Lk~~le~  158 (184)
T 2nn5_A          104 TWD-T----------GIIYFDLKEQA-PHQTLLVFSESLPE--NFTTPRHK---DIAGWSIVLNRLKQVVET  158 (184)
T ss_dssp             EET-T----------EEEEEEEEEEE-TTEEEEEEEEEECT--TCSSCHHH---HHHHHHHHHHHHHHHHHC
T ss_pred             EEc-C----------eEEEEEEEECC-CCCEEEEEEEeccC--CccchhhH---HHHHHHHHHHHHHHHHhc
Confidence            652 1          234666788 5 45799999844322  11111222   234567788888888876

>3qsz_A STAR-related lipid transfer protein; structural genomics, PSI-biology; 2.39A {Xanthomonas axonopodis PV}

Probab=98.31  E-value=0.00015  Score=53.65  Aligned_cols=143  Identities=13%  Similarity=0.100  Sum_probs=86.0

Q ss_pred             EEEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEecC---CceeEEEEEEEEEecccce
Q 031431            4 VTYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEG---GQVKYAKHKIEEEDKVNLK   79 (159)
Q Consensus         4 ~~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g---~~~~~~kErl~~~D~~~~~   79 (159)
                      ..+..+..|++||+++|+++ |... .|+|.|. +.++++++-+++ -.+-.+.+...   .+-.++-.+-...+.+. .
T Consensus        27 ~~~k~~~~v~~s~~~v~~~l~D~~~-~~~W~~~-~~~~~vle~~~~-~~i~y~~~~~p~p~~~RD~v~~~~~~~~~~g-~  102 (189)
T 3qsz_A           27 REFRGEVRLKAAADDVVKVLRDANA-FRQWMPD-VAASELLKATDT-EQYHYLDNSAPWPVSNRDGVYHFTYEKAGDG-A  102 (189)
T ss_dssp             CEEEEEEEESSCHHHHHHHHHCGGG-GGGTSTT-EEEEEEEEECSS-EEEEEEEECCSSSCCCEEEEEEEEEEECTTS-C
T ss_pred             EEEEEEEEEECCHHHHHHHHHhHHH-hhhHHHh-cCEEEEEeecCC-ceEEEEEeecCCCcCCcceEEEEEEEECCCC-e
Confidence            45778889999999999999 9887 8999996 888888876432 22333344322   11123333323233333 3


Q ss_pred             EEEEEEeccc----cCCC-ceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHHH-hHHHHHHHHHHHHHHHHhh
Q 031431           80 LKYSVIEGND----LADY-KLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAK-AGKERVLGVVKGVEAYLQA  153 (159)
Q Consensus        80 ~~y~v~eg~~----l~~Y-~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~~-~~~~~~~~~~k~le~~l~~  153 (159)
                      +...+.....    .++| +.......+.++| ++++|.+++....++.+.  .|.-.++ .+++....+++.|.+.+.+
T Consensus       103 ~~i~~~~~~~~~P~~~~~VR~~~~~~~~~i~p-~~~~t~vt~~~~~dp~G~--iP~~lvn~~~~~~~~~~l~~L~k~~~~  179 (189)
T 3qsz_A          103 ITVRVEAVPDYLPLRKGKVRIPRAKGQWTLVP-DADGVDVTYQMHASPGGS--IPSWLANQTVVETPFGTLKALRSHLRQ  179 (189)
T ss_dssp             EEEEEEECTTSSCCCTTSEECCCEEEEEEEEE-CSSSEEEEEEEEECSCSS--SCHHHHHHTTTHHHHHHHHHHHHHHTC
T ss_pred             EEEEEEcCCCccCCCCCeEEeeEeeEEEEEEE-CCCeEEEEEEEEeCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            3333222211    1121 1112223445688 778899999999999864  4455544 4555667788888776653

>4fpw_A CALU16; structural genomics, PSI-biology, northeast structural genom consortium, NESG, unknown function; 2.50A {Micromonospora echinospora} PDB: 2luz_A

Probab=98.27  E-value=4.4e-06  Score=62.59  Aligned_cols=121  Identities=10%  Similarity=0.057  Sum_probs=75.5

Q ss_pred             EEEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEecCCceeEEEEEEEEEecccceEEE
Q 031431            4 VTYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQVKYAKHKIEEEDKVNLKLKY   82 (159)
Q Consensus         4 ~~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~y   82 (159)
                      .++..++.|+||+++||+++ |... +++|.+. .      +++-.+|..-.+.+..+       =++.++++.++ +.|
T Consensus        21 ~~i~~~r~i~Appe~Vw~alTdpe~-l~~W~~p-~------~~d~~~Gg~~~~~~~~~-------g~v~e~~pp~r-l~~   84 (181)
T 4fpw_A           21 RSIIIRQRYDAPVDEVWSACTDPNR-INRWFIE-P------KGDLREGGNFALQGNAS-------GDILRCEPPRR-LTI   84 (181)
T ss_dssp             EEEEEEEEESSCHHHHHHHHHCHHH-HHHHSCC-E------ESCCSTTCEEEESSSCE-------EECCEEETTTE-EEE
T ss_pred             ceEEEEEEECCCHHHHHHHHcChHH-HhhccCC-C------ccCCCCCCEEEEEecCC-------EEEEEEcCCcE-EEE
Confidence            47889999999999999999 8876 7888764 2      24434454433332211       26667777665 677


Q ss_pred             EEEeccccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHHHhHHHHHHHHHHHHHHHHhhC
Q 031431           83 SVIEGNDLADYKLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQAN  154 (159)
Q Consensus        83 ~v~eg~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~~~~~~~~~~~~k~le~~l~~~  154 (159)
                      +...++.    ..  ...+++|.|. +++|.++++-...+       ++......+.-..++..|.+||...
T Consensus        85 tw~~~~~----~~--s~vt~~l~~~-~~gT~Ltl~~~~~~-------~e~~~~~~~GW~~~L~~L~~~L~G~  142 (181)
T 4fpw_A           85 SWVYEGK----PD--SEVELRLSEE-GDGTLLELEHATTS-------EQMLVEVGVGWEMALDFLGMFIRGD  142 (181)
T ss_dssp             EEBCTTS----CC--EEEEEEEEEE-TTEEEEEEEEEESC-------HHHHHHHHHHHHHHHHHHHHHC---
T ss_pred             EEEcCCC----Cc--EEEEEEEEEC-CCcEEEEEEEEcCC-------HHHHHHHHHhHHHHHHHHHHHhCCC
Confidence            7654332    11  2456677886 46798888755422       1223333445577888888888543

>1x53_A Activator of 90 kDa heat shock protein ATPase homolog 1; AHA1, HSP90,DUF704, C-terminal domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.129.3.5

Probab=98.26  E-value=2.6e-06  Score=60.78  Aligned_cols=128  Identities=9%  Similarity=0.089  Sum_probs=75.8

Q ss_pred             CccEEEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEecCCceeEEEEEEEEEecccce
Q 031431            1 MGVVTYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQVKYAKHKIEEEDKVNLK   79 (159)
Q Consensus         1 m~~~~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~   79 (159)
                      |.-.+++.++.|+||+++||+++ |... +++|.+.. ..     .+-.+|..  +.+..|.    +.=++.++++.++ 
T Consensus         8 m~~~~i~~~~~i~ap~e~Vw~altdp~~-~~~W~~~~-~~-----~d~~~Gg~--~~~~~G~----~~g~v~e~~p~~~-   73 (145)
T 1x53_A            8 IPTCKITLKETFLTSPEELYRVFTTQEL-VQAFTHAP-AT-----LEADRGGK--FHMVDGN----VSGEFTDLVPEKH-   73 (145)
T ss_dssp             CCEEEEEEEEEESSCHHHHHHHTTCHHH-HHHHSCSC-CB-----CCCSTTCC--CBBTTTT----EECCEEEEETTTE-
T ss_pred             ccccEEEEEEEECCCHHHHHHHhCCHHH-HHHhcCCC-ce-----EECCCCCE--EEEECCe----eEEEEEEEeCCCE-
Confidence            44468999999999999999999 8876 78997642 22     22122221  2222332    3336677877665 


Q ss_pred             EEEEEEeccc-cCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHHHhHHHHHHH-HHHHHHHHHhhC
Q 031431           80 LKYSVIEGND-LADYKLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAKAGKERVLG-VVKGVEAYLQAN  154 (159)
Q Consensus        80 ~~y~v~eg~~-l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~~~~~~~~~~-~~k~le~~l~~~  154 (159)
                      +.|+-...+. ...|    .+.+++|.+. +++|.++++-...+..      + .....+.-.. ++..|.++|-..
T Consensus        74 l~~~~~~~~~~~~~~----~~v~~~l~~~-~~gT~l~~~~~~~~~~------~-~~~~~~Gw~~~~l~~L~~~le~g  138 (145)
T 1x53_A           74 IVMKWRFKSWPEGHF----ATITLTFIDK-NGETELCMEGRGIPAP------E-EERTRQGWQRYYFEGIKQTFGYG  138 (145)
T ss_dssp             EEEEEEETTSCTTCC----EEEEEECCBC-SSCEEEEEEEEEEEHH------H-HHHHHHTTHHHHHHHHHHHTCCC
T ss_pred             EEEEEecCCCCCCCc----EEEEEEEEEC-CCCEEEEEEEECCCHH------H-HHHHHhchhHHHHHHHHHHHhcC
Confidence            6776543332 1111    2456666775 4579999885443321      1 2222334455 688888887543

>3ni8_A PFC0360W protein; heat shock, malaria, ATPase, structural genomics consortium, unknown function; 2.50A {Plasmodium falciparum}

Probab=98.24  E-value=9.4e-06  Score=59.30  Aligned_cols=133  Identities=14%  Similarity=0.134  Sum_probs=73.7

Q ss_pred             EEEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEecCCceeEEEEEEEEEecccceEEE
Q 031431            4 VTYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQVKYAKHKIEEEDKVNLKLKY   82 (159)
Q Consensus         4 ~~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~y   82 (159)
                      .++..++.|+||+++||+++ |... +.+|.++...+.+...|    |..+   +..|    .+.=++.++++.++ +.|
T Consensus        19 ~~i~~~r~~~ap~e~Vw~A~Tdpe~-l~~W~~g~~~~~d~~~G----G~~~---~~~G----~~~g~v~ev~p~~r-lv~   85 (158)
T 3ni8_A           19 MSFEITEEYYVPPEVLFNAFTDAYT-LTRLSRGSLAEVDLKVG----GKFS---LFSG----SILGEFTEITKPHK-IVE   85 (158)
T ss_dssp             CCEEEEEEESSCHHHHHHHHHCHHH-HHHHTTTSCCEECCSTT----CEEE---ETTT----TEEEEEEEEETTTE-EEE
T ss_pred             ceEEEEEEECCCHHHHHHHhcCHHH-HHhhcCCCccEEEccCC----CEEE---EecC----CEEEEEEEEeCCcE-EEE
Confidence            46888999999999999999 8775 78888731222322222    3333   3333    23446677888766 556


Q ss_pred             EEEeccccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHHHhHHHHHHH-HHHHHHHHHh
Q 031431           83 SVIEGNDLADYKLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAKAGKERVLG-VVKGVEAYLQ  152 (159)
Q Consensus        83 ~v~eg~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~~~~~~~~~~-~~k~le~~l~  152 (159)
                      +---.+.-.. ..  .+.+++|.+..+++|.++.+-+--+..+............++-.. ++..|.+||-
T Consensus        86 tw~~~~~~~~-~~--s~vt~~l~~~~~~~T~ltl~~~g~~~~~~~~~~~~~~~~~~GW~~~~L~~Lk~~Le  153 (158)
T 3ni8_A           86 KWKFRDWNEC-DY--STVTVEFISVKENHTKLKLTHNNIPASNKYNEGGVLERCKNGWTQNFLHNIEVILG  153 (158)
T ss_dssp             EEEETTSCSS-CC--EEEEEEEEEEETTEEEEEEEEECCCSSCTTCCCCHHHHHHHHHHHTHHHHHHHTSC
T ss_pred             EEEecCCCCC-Cc--EEEEEEEEecCCCCEEEEEEEEccCchhhhccchhHHHHHhChhHHHHHHHHHHhC
Confidence            5432222111 11  245667788545678888775533322211000011222234455 5888888874

>2luz_A CALU16; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Micromonospora echinospora}

Probab=98.23  E-value=2.7e-05  Score=58.93  Aligned_cols=121  Identities=10%  Similarity=0.058  Sum_probs=74.2

Q ss_pred             EEEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEecCCceeEEEEEEEEEecccceEEE
Q 031431            4 VTYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQVKYAKHKIEEEDKVNLKLKY   82 (159)
Q Consensus         4 ~~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~y   82 (159)
                      -++..+.++++|+++||+++ |... +.+|++. .      +++-.+|..-.+.+..       .-++.++++.++ +.|
T Consensus        32 ~~l~i~R~f~Ap~e~VW~AlTdpe~-l~~W~~~-~------~~d~r~GG~~~~~~~~-------~g~v~ev~pp~r-L~~   95 (192)
T 2luz_A           32 RSIIIRQRYDAPVDEVWSACTDPNR-INRWFIE-P------KGDLREGGNFALQGNA-------SGDILRCEPPRR-LTI   95 (192)
T ss_dssp             EEEEEEEEESSCHHHHHHHHHCHHH-HTTTSCC-E------EECCSTTSEEEETTSE-------EEEEEEEETTTE-EEE
T ss_pred             eEEEEEEEeCCCHHHHHHHHcCHHH-HheeeCC-C------cccCccCcEEEeeccc-------cceEEEEecCee-EEE
Confidence            36788999999999999999 8876 7888874 2      2343344332232221       125677887766 677


Q ss_pred             EEEeccccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHHHhHHHHHHHHHHHHHHHHhhC
Q 031431           83 SVIEGNDLADYKLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQAN  154 (159)
Q Consensus        83 ~v~eg~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~~~~~~~~~~~~k~le~~l~~~  154 (159)
                      +-...+.    ..  .+.+++|.|.++ +|.++.+=+.       ++++.......+=..++..|+.||...
T Consensus        96 tw~~~~~----~~--~~vt~~L~~~g~-gT~Ltl~h~~-------~~~~~~~~~~~GW~~~Ld~L~~~L~g~  153 (192)
T 2luz_A           96 SWVYEGK----PD--SEVELRLSEEGD-GTLLELEHAT-------TSEQMLVEVGVGWEMALDFLGMFIRGD  153 (192)
T ss_dssp             EEEESSS----CE--EEEEEEEEEETT-EEEEEEEEEE-------SCHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             EEeecCC----CC--ceEEEEEEEcCC-cEEEEEEEEC-------CCHHHHHHHhccHHHHHHHHHHHhCCC
Confidence            7543322    11  245667788754 6887765432       233333332334467888999999754

>1ln1_A PC-TP, phosphatidylcholine transfer protein; start domain, lipid binding protein; HET: DLP; 2.40A {Homo sapiens} SCOP: d.129.3.2 PDB: 1ln2_A* 1ln3_A*

Probab=98.18  E-value=0.00028  Score=53.06  Aligned_cols=146  Identities=14%  Similarity=0.081  Sum_probs=89.8

Q ss_pred             EEEEEEEEEc-CCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEecCCce---eEEEEE-EEEEeccc
Q 031431            4 VTYESEETYA-VPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQV---KYAKHK-IEEEDKVN   77 (159)
Q Consensus         4 ~~~~~e~~i~-apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~---~~~kEr-l~~~D~~~   77 (159)
                      ..+..+.+|+ +|++++++++ |... .++|.|. +.++++++-+|  ..|..+.+....+.   .++-.| ...+++..
T Consensus        52 ~~~k~~~~i~~~~~~~v~~~l~d~~~-r~~Wd~~-~~~~~vle~~~--~~i~~~~~~~p~p~~~RD~v~~~~~~~~~~~g  127 (214)
T 1ln1_A           52 YEYKVFGVLEDCSPTLLADIYMDSDY-RKQWDQY-VKELYEQECNG--ETVVYWEVKYPFPMSNRDYVYLRQRRDLDMEG  127 (214)
T ss_dssp             EEEEEEEEETTSCHHHHHHHHHCHHH-HHHHCTT-EEEEEEEEETT--EEEEEEEECCCTTSCCEEEEEEEEEEEECSTT
T ss_pred             EEEEEEEEECCCCHHHHHHHHcCHHH-HHHHHHH-HhhEEEeccCC--CEEEEEEEEcCCCCCCceEEEEEEEEecccCC
Confidence            4577889995 9999999999 9876 7999996 88888887764  45666666532221   233222 22344333


Q ss_pred             ceEEEEE---Eecc---ccCCC-ceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHHH-hHHHHHHHHHHHHHH
Q 031431           78 LKLKYSV---IEGN---DLADY-KLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAK-AGKERVLGVVKGVEA  149 (159)
Q Consensus        78 ~~~~y~v---~eg~---~l~~Y-~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~~-~~~~~~~~~~k~le~  149 (159)
                      ..+.+.+   ++.+   ...+| +.......+.+.|.++++|.+++....++.+.  .|.-.++ .++..+..+++.|.+
T Consensus       128 ~~~~~i~~~Sv~~p~~P~~~~~VR~~~~~~~~~i~p~~~~~t~v~~~~~~Dp~G~--iP~~l~n~~~~~~~~~~l~~l~k  205 (214)
T 1ln1_A          128 RKIHVILARSTSMPQLGERSGVIRVKQYKQSLAIESDGKKGSKVFMYYFDNPGGQ--IPSWLINWAAKNGVPNFLKDMAR  205 (214)
T ss_dssp             CCEEEEEEEECCBTTBCCCTTSEEECCEEEEEEEEECSSSSEEEEEEEEECCSSC--CCHHHHHHHHHTHHHHHHHHHHH
T ss_pred             CeEEEEEEecccCCCCCCCCCcEEEEEEEEEEEEecCCCCceEEEEEEEECCCCc--ccHHHHHHHHHHHhHHHHHHHHH
Confidence            2221111   1211   11222 11112233456787777899999999999864  4444444 556667889999999


Q ss_pred             HHhhCC
Q 031431          150 YLQANP  155 (159)
Q Consensus       150 ~l~~~~  155 (159)
                      ++.+.+
T Consensus       206 ~~~~y~  211 (214)
T 1ln1_A          206 ACQNYL  211 (214)
T ss_dssp             HHHTC-
T ss_pred             HHHhcc
Confidence            988766

>2qpv_A Uncharacterized protein ATU1531; structural genomics, PSI protein structure initiative, midwest center for structural genomics; 2.35A {Agrobacterium tumefaciens str} SCOP: d.129.3.8

Probab=98.17  E-value=2e-05  Score=57.67  Aligned_cols=34  Identities=9%  Similarity=0.020  Sum_probs=30.7

Q ss_pred             EEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEE
Q 031431            5 TYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNV   40 (159)
Q Consensus         5 ~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~   40 (159)
                      ..+.+++|++|+++||+.+ |+.+ +|.|+|+ ++++
T Consensus        28 ~~~~si~I~ap~eeVy~~~~D~e~-lP~W~~~-l~~~   62 (156)
T 2qpv_A           28 SRIIHLSVEKPWAEVYDFAANPGN-MPRWAAG-LAGG   62 (156)
T ss_dssp             EEEEEEEESSCHHHHHHHHHCGGG-GGGTCGG-GTTC
T ss_pred             ceEEEEEEcCCHHHHHHHHHChhh-HHHHHHh-hhhh
Confidence            5689999999999999999 9999 8999997 6654

>1zxf_A CALC; SELF-sacrificing resistance protein, structural genomics, PSI, protein structure initiative; NMR {Micromonospora echinospora} SCOP: d.129.3.5 PDB: 2gkc_A* 2gkd_A 2l65_A*

Probab=97.90  E-value=1.4e-05  Score=57.82  Aligned_cols=134  Identities=10%  Similarity=0.080  Sum_probs=70.3

Q ss_pred             EEEEEEEEcCCHHHHHhhh-cCCCCcccccCCce------eEEEEEcCCCCCCcEEEEEEecCCceeEEEEEEEEEeccc
Q 031431            5 TYESEETYAVPPARMFNAL-ASDNLPSKIFPDVV------KNVEVLEGNGGPGSIKKFTIVEGGQVKYAKHKIEEEDKVN   77 (159)
Q Consensus         5 ~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v------~s~~~~eG~g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~   77 (159)
                      .+..++.|+||+++||+++ |  . +.+|.+..+      ..+++. -.|  |.. .+...+|...  ..=++.++++.+
T Consensus         5 ~i~~~r~~~Ap~e~Vw~A~Td--~-l~~W~~p~~~~~~~~~~~~~d-r~G--G~~-~~~~~~G~~~--~~g~v~ev~pp~   75 (155)
T 1zxf_A            5 FVRHSVTVKADRKTAFKTFLE--G-FPEWWPNNFRTTKVGAPLGVD-KKG--GRW-YEIDEQGEEH--TFGLIRKVDEPD   75 (155)
T ss_dssp             CEEEEEEESSHHHHHHHHHTT--C-SSSSSSGGGSTTTTCSSCEEE-TTT--TEE-ECCCTTTSCC--CCEEEEEEETTT
T ss_pred             eEEEEEEEeCCHHHHHHHHHh--h-HHhhcCCCccccCCCceEEEE-CCC--CEE-EEECCCCCeE--eEEEEEEECCCC
Confidence            5788999999999999999 8  2 556653222      223332 212  333 2222233211  112567788777


Q ss_pred             ceEEEEE-Eeccc--cCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCC-CHHHHH-hHHHHHHHHHHHHHHHHh
Q 031431           78 LKLKYSV-IEGND--LADYKLEKISFEHQWRASPNGGSICKTICKLHAKGEVEV-TEEQAK-AGKERVLGVVKGVEAYLQ  152 (159)
Q Consensus        78 ~~~~y~v-~eg~~--l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~-~~~~~~-~~~~~~~~~~k~le~~l~  152 (159)
                      | +.|+- .+++.  .+. ..  .+.+++|++.++|+|.++.+-..-.  ...+ ....++ ....+-..++..|+++|.
T Consensus        76 r-l~~tw~~~~~~~~~~~-~~--s~vt~~l~~~~~g~T~ltl~~~~~~--~~~~~~~~~~~~~~~~GW~~~l~~L~~~l~  149 (155)
T 1zxf_A           76 T-LVIGWRLNGFGRIDPD-NS--SEFTVTFVADGQKKTRVDVEHTHFD--RMGTKHAKRVRNGMDKGWPTILQSFQDKID  149 (155)
T ss_dssp             E-EEEECCCSSSSSCCCS-SC--CCEEEEEEEETTTEEEEEEEECSST--TSCHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred             E-EEEEEecCCCCCCCCC-Cc--EEEEEEEEECCCCcEEEEEEEeccc--ccccchhHHHHHHHHhhHHHHHHHHHHHHh
Confidence            6 56763 23311  111 11  2346677887665588776644211  1101 112222 111234677888888876


Q ss_pred             h
Q 031431          153 A  153 (159)
Q Consensus       153 ~  153 (159)
                      +
T Consensus       150 ~  150 (155)
T 1zxf_A          150 E  150 (155)
T ss_dssp             H
T ss_pred             h
Confidence            4

>2lio_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Bacteroides fragilis}

Probab=97.58  E-value=0.0042  Score=44.31  Aligned_cols=100  Identities=11%  Similarity=0.148  Sum_probs=63.1

Q ss_pred             CccEEEEEEEEEcCCH-HHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEecCCceeEEEEEEEEEecccc
Q 031431            1 MGVVTYESEETYAVPP-ARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQVKYAKHKIEEEDKVNL   78 (159)
Q Consensus         1 m~~~~~~~e~~i~apa-~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~   78 (159)
                      |...+++.++.|+||+ ++||+++ +... |..|+.+.+.    ..|.     .-.+.....+   ...=++.++++.++
T Consensus         1 m~k~~i~~e~~i~A~~~~~VW~~IStPeg-L~~Wfad~v~----~~g~-----~~~F~w~~~~---~~~~~v~~~~~~~~   67 (136)
T 2lio_A            1 MKKEKIHLEYLLNATSKNILWSAISTPTG-LEDWFADKVV----SDDK-----TVTFCWGKTE---QRQAGIVAIRAYSF   67 (136)
T ss_dssp             CCCEEEEEEEEECTTSCTHHHHGGGSHHH-HTTTSSSEEE----EETT-----EEEEESSSSS---EEEEEEEEEETTTE
T ss_pred             CCCCcEEEEEEecCChHHHHHHHhCChhh-hhcccCCCCc----ccCc-----eEEEEeCCCC---cEeEEEEEEcCCCE
Confidence            7668999999999999 9999999 7665 7888876433    2332     2222333212   33446777888777


Q ss_pred             eEEEEEEeccccCCCceeEEEEEEEEEECCC-CCeEEEEEEEEE
Q 031431           79 KLKYSVIEGNDLADYKLEKISFEHQWRASPN-GGSICKTICKLH  121 (159)
Q Consensus        79 ~~~y~v~eg~~l~~Y~~~~~~~~~~~~p~~~-g~t~v~W~~~~e  121 (159)
                       ++|+-..-+.    .+.  .+++++.+.+. +++.++.+ .|-
T Consensus        68 -i~FrW~~~~~----~~~--~~e~~l~~~~~t~~~~L~vt-dFa  103 (136)
T 2lio_A           68 -IRFHWLDDEN----ERD--YFEIKMSYNELTGDYVLEIT-DFS  103 (136)
T ss_dssp             -EEEEESSSSS----SSC--EEEEEEEECTTTSCEEEEEE-EEE
T ss_pred             -EEEEccCCCC----Cce--EEEEEEEecCCCCcEEEEEe-cCC
Confidence             6888754321    211  24566666642 46777666 443

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=97.56  E-value=0.00014  Score=61.95  Aligned_cols=109  Identities=6%  Similarity=0.088  Sum_probs=76.8

Q ss_pred             EEEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCC--CCCcEEEEEEecCCceeEEEEEE--EEEecccc
Q 031431            4 VTYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNG--GPGSIKKFTIVEGGQVKYAKHKI--EEEDKVNL   78 (159)
Q Consensus         4 ~~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g--~~GsvR~~~~~~g~~~~~~kErl--~~~D~~~~   78 (159)
                      ++++.+..|++|++.||+.+ +..+ +++|.|. ...++++.+.|  .+|++- +.+..+  ..|.-| +  ..+|+..+
T Consensus         1 ~~~~~~~~i~~p~~~v~~~~~~~~~-~~~~~p~-~~~~~~~~~~~~~~~G~~~-~~~~~~--~~w~~~-~~~t~~~~~~~   74 (516)
T 3oh8_A            1 MSLTTSHFIPFPREMVWDWHTRKGA-VARLTPP-FIPLNPITQAERLADGTTI-FSLPAG--LKWVAR-HDLSGFLNGSR   74 (516)
T ss_dssp             -CEEEEEEESSCHHHHHHHHHSTTH-HHHHSCT-TSSCEECSCCSCSSSCEEE-EECSTT--CEEEEE-ECGGGCBTTTE
T ss_pred             CeEEEEEEccCCHHHHHHHhcCcch-HHHhCCC-CCceEEecCCCCCcCCeEE-EecCCC--cEEEEE-EccccccCCCe
Confidence            35889999999999999999 9998 7999997 77788775544  478877 776543  355444 4  55666654


Q ss_pred             eEEEEEEeccccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEc
Q 031431           79 KLKYSVIEGNDLADYKLEKISFEHQWRASPNGGSICKTICKLHAK  123 (159)
Q Consensus        79 ~~~y~v~eg~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~  123 (159)
                       +.-....|++. .|.....+..  |.+.++ ||.++..++|...
T Consensus        75 -F~d~~~~gp~~-~~~~w~h~h~--f~~~~~-gt~~~d~~~~~~p  114 (516)
T 3oh8_A           75 -FTDVCLTAPVK-ALANWRHVHN--FVDQDG-GTLITDSVSTRLP  114 (516)
T ss_dssp             -EEEECCSCSSG-GGSSCEEEEE--EEEETT-EEEEEEEEECSSC
T ss_pred             -EEEEeccCccc-ceeeeEEEEE--EEEcCC-CcEEEEEEEeeCc
Confidence             67777777631 1345555554  577644 6999999988643

>2ffs_A Hypothetical protein PA1206; 7-stranded beta sheet, C-terminal helix, structural genomics protein structure initiative; HET: MSE; 2.50A {Pseudomonas aeruginosa} SCOP: d.129.3.7

Probab=96.92  E-value=0.061  Score=39.21  Aligned_cols=133  Identities=8%  Similarity=0.073  Sum_probs=78.7

Q ss_pred             EEEEEEEEEcCC---------HHHHHhhh--cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEecCCceeEEEEEEEE
Q 031431            4 VTYESEETYAVP---------PARMFNAL--ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQVKYAKHKIEE   72 (159)
Q Consensus         4 ~~~~~e~~i~ap---------a~~vW~~~--d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~~~~kErl~~   72 (159)
                      ++++..+.||-|         .+++|+-+  ...+ -...+|+ +.+|++++.+++ .-.|.++|+.+    .++|++. 
T Consensus         1 m~f~htvpIN~p~~p~~p~LTr~QlW~GL~~kar~-p~~Fvp~-i~~c~Vlse~~~-~~~R~l~fg~~----~i~e~vt-   72 (157)
T 2ffs_A            1 MQFEHLVQVNDRTLVDLPVLDRLQLWEGLVCRARE-PQYFVVG-LERFEILVDDGD-RLHRRLYLPGL----VVEDEVV-   72 (157)
T ss_dssp             CCEEEEEECCCCCC---CCCCHHHHHHHHHHHHHC-GGGTCTT-CCEEEEEEECSS-EEEEEEEETTE----EEEEEEE-
T ss_pred             CceeEEEecCCCCCCCCCccCHHHHHHHHHHHhcC-hhhcccc-cCeEEEEecCCC-eEEEEEEECCC----ccceEEE-
Confidence            357788888876         36899998  3333 2356775 999999976533 66799999766    6888876 


Q ss_pred             EecccceEEEEEEeccccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEE-cCCC----CCCHHHHH-hHHHHHHHHHHH
Q 031431           73 EDKVNLKLKYSVIEGNDLADYKLEKISFEHQWRASPNGGSICKTICKLHA-KGEV----EVTEEQAK-AGKERVLGVVKG  146 (159)
Q Consensus        73 ~D~~~~~~~y~v~eg~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~-~~~~----~~~~~~~~-~~~~~~~~~~k~  146 (159)
                      +.+..+ +.|.+-...--   .-.+.+.+  +... ++| .+-.++.|+- .++.    ..-.+..+ +.++......+.
T Consensus        73 l~~~~~-v~f~~~~t~~~---~gs~ltn~--Iee~-~~g-~L~lrF~ye~~~p~~s~e~~~~~~~~~~ay~~ad~~Tv~~  144 (157)
T 2ffs_A           73 LKAPDS-AHYSIKPSAEV---AGGSLDMT--IEEP-EPG-SLFVRFAYCTRYLQPLGDELPYDAFVKQAYIAMDVETIAT  144 (157)
T ss_dssp             EETTTE-EEEEECCCSSS---BEEEEEEE--EEEE-ETT-EEEEEEEEEEECSCC--CCCCCBHHHHHHHHHHHHHHHHH
T ss_pred             EcCCcE-EEEEcccccCC---CCceEEEE--EeeC-CCC-cEEEEEEEEccCCCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666665 67888652211   22223333  3332 223 5555566654 2321    12223334 455555777777


Q ss_pred             HHHHHh
Q 031431          147 VEAYLQ  152 (159)
Q Consensus       147 le~~l~  152 (159)
                      |-+++.
T Consensus       145 iRel~~  150 (157)
T 2ffs_A          145 IRDRFG  150 (157)
T ss_dssp             HHHHHC
T ss_pred             HHHHHH
Confidence            765543

>3p0l_A Steroidogenic acute regulatory protein, mitochond; structural genomics consortium, SGC, start domain, cholester transport, cholesterol; 3.40A {Homo sapiens}

Probab=96.56  E-value=0.14  Score=38.41  Aligned_cols=148  Identities=13%  Similarity=0.124  Sum_probs=79.8

Q ss_pred             EEEEEEEEcCCHHHHHhhh--cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEec--CCc---eeEEEEEEEEEeccc
Q 031431            5 TYESEETYAVPPARMFNAL--ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVE--GGQ---VKYAKHKIEEEDKVN   77 (159)
Q Consensus         5 ~~~~e~~i~apa~~vW~~~--d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~--g~~---~~~~kErl~~~D~~~   77 (159)
                      .+..+..+++|++++|+++  |... .++|.+. +.++++++--+.--.|-......  ..+   -.++--|....++..
T Consensus        56 ~~k~~~~v~~~~~~v~~~l~~d~~~-r~~Wd~~-~~~~~vle~~~~~t~I~y~~~~~~~~~~v~~RDfv~~r~~~~~~~~  133 (221)
T 3p0l_A           56 VFRLEVVVDQPMERLYEELVERMEA-MGEWNPN-VKEIKVLQKIGKDTFITHELAAEAAGNLVGPRDFVSVRCAKRRGST  133 (221)
T ss_dssp             EEEEEEEESSCHHHHHHHHTTTGGG-TTTSCTT-CSEEEEEEECSSSEEEEEEEECC---CCSCCEEEEEEEEEEECSSC
T ss_pred             EEEEEEEEcCCHHHHHHHHHhccch-hhhcCcc-hheEEEEEecCCCeEEEEEeeccccCCccCCceEEEEEEEEEcCCe
Confidence            3566778899999999986  6565 7899996 88888876542211232222222  111   123322222223322


Q ss_pred             ceEEEEEEeccc---cCCCc-eeEEEEEEEEEECCCC--CeEEEEEEEEEEcCCCCCCHHHHH-hHHHHHHHHHHHHHHH
Q 031431           78 LKLKYSVIEGND---LADYK-LEKISFEHQWRASPNG--GSICKTICKLHAKGEVEVTEEQAK-AGKERVLGVVKGVEAY  150 (159)
Q Consensus        78 ~~~~y~v~eg~~---l~~Y~-~~~~~~~~~~~p~~~g--~t~v~W~~~~e~~~~~~~~~~~~~-~~~~~~~~~~k~le~~  150 (159)
                      ..+...=++-+.   .++|- .......+.+.|.++|  +|.++|....++.+.  .|.-.++ .+......+++.|.++
T Consensus       134 ~vi~~~Sv~~~~~P~~~g~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~--iP~~lvn~~~~~~~~~~~~~Lr~~  211 (221)
T 3p0l_A          134 CVLAGMATDFGNMPEQKGVIRAEHGPTCMVLHPLAGSPSKTKLTWLLSIDLKGW--LPKSIINQVLSQTQVDFANHLRKR  211 (221)
T ss_dssp             EEECCEECCCTTSCCCTTSEECEECSCEEEEEEETTEEEEEEEEEEECEECCSS--CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEeccCCCCCCCCCeEEEeccceEEEEEECCCCCCcEEEEEEEEecCCCC--CCHHHHHHHHHHHHHHHHHHHHHH
Confidence            222111112211   12221 1111123445777665  799999998888875  4455555 3345667888888888


Q ss_pred             HhhCCC
Q 031431          151 LQANPD  156 (159)
Q Consensus       151 l~~~~~  156 (159)
                      +...+.
T Consensus       212 ~~~~~~  217 (221)
T 3p0l_A          212 LESHPA  217 (221)
T ss_dssp             TC----
T ss_pred             Hhhchh
Confidence            875543

>1jss_A Stard4, cholesterol-regulated start protein 4; start domain, structural genomics, PSI, protein structure initiative; 2.20A {Mus musculus} SCOP: d.129.3.2

Probab=96.35  E-value=0.22  Score=37.56  Aligned_cols=144  Identities=8%  Similarity=0.026  Sum_probs=77.3

Q ss_pred             EEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEec--C---CceeEEEEEEEEEecccc
Q 031431            5 TYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVE--G---GQVKYAKHKIEEEDKVNL   78 (159)
Q Consensus         5 ~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~--g---~~~~~~kErl~~~D~~~~   78 (159)
                      -+..+.+|++|++++++++ |... -++|-+. +.++++++--+.--.|-...+..  .   .+-.++--|-..-++...
T Consensus        68 ~~k~~~~v~~~~~~v~~~l~d~~~-r~~Wd~~-~~~~~vle~id~~~~I~y~~~~~~~~~~v~~RDfv~~r~~~~~~~~~  145 (224)
T 1jss_A           68 LYKAQGVMDDVVNNVIDHIRPGPW-RLDWDRL-MTSLDVLEHFEENCCVMRYTTAGQLLNIISPREFVDFSYTVGYEEGL  145 (224)
T ss_dssp             EEEEEEEESSCHHHHHHHHSSSTT-HHHHCSS-EEEEEEEEECSTTEEEEEEEECCBTTTTBCCEEEEEEEEEEEETTEE
T ss_pred             EEEEEEEEeCCHHHHHHHHhCccc-ccccccc-eeeEEEEEEcCCCeEEEEEEcccccCCCCCCCeEEEEEEEEEcCCeE
Confidence            3567788899999999999 8776 5899996 88888886532111233323322  1   111233333222223332


Q ss_pred             eEEEEEEeccc-cCCC-ceeEEEEEEEEEECCC--CCeEEEEEEEEEEcCCCCCCHHHHH-hHHHHHHHHHHHHHHHHh
Q 031431           79 KLKYSVIEGND-LADY-KLEKISFEHQWRASPN--GGSICKTICKLHAKGEVEVTEEQAK-AGKERVLGVVKGVEAYLQ  152 (159)
Q Consensus        79 ~~~y~v~eg~~-l~~Y-~~~~~~~~~~~~p~~~--g~t~v~W~~~~e~~~~~~~~~~~~~-~~~~~~~~~~k~le~~l~  152 (159)
                      .+...=++-+. -+.| +.......+.+.|.++  ++|.++|.+..++.|.  .|.-.++ .+......+++.|.+++.
T Consensus       146 vi~~~Sv~hp~~~~g~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~--iP~~lvn~~~~~~~~~~~~~Lr~~~~  222 (224)
T 1jss_A          146 LSCGVSVEWSETRPEFVRGYNHPCGWFCVPLKDSPSQSLLTGYIQTDLRGM--IPQSAVDTAMASTLANFYSDLRKGLR  222 (224)
T ss_dssp             EEEEEECCCCCCCTTSEECEECSEEEEEEEETTEEEEEEEEEEECEECCSC--CCHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             EEEEeeeecCCCCCCCEEEEecccEEEEEEcCCCCCceEEEEEEEeCCCCC--ccHHHHHHHHHHhHHHHHHHHHHHHh
Confidence            22111112111 1111 1111112344577654  3799999998898875  3444444 334445667777766654

>2e3n_A Lipid-transfer protein CERT; ceramide transfer, lipid transport; HET: 6CM; 1.40A {Homo sapiens} PDB: 2e3m_A* 2e3o_A* 2e3p_A* 2e3q_A* 2e3r_A* 2e3s_A 2z9y_A* 3h3q_A* 3h3r_A* 3h3s_A* 3h3t_A* 2z9z_A*

Probab=96.23  E-value=0.08  Score=40.72  Aligned_cols=140  Identities=12%  Similarity=0.029  Sum_probs=74.5

Q ss_pred             EEEE-cCCHHHHHhhh-cCCCCcccccCCceeEEEEEcC-CCCCCcEEEEEEecCCce---eEEEEEEEEEe----cc--
Q 031431            9 EETY-AVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEG-NGGPGSIKKFTIVEGGQV---KYAKHKIEEED----KV--   76 (159)
Q Consensus         9 e~~i-~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG-~g~~GsvR~~~~~~g~~~---~~~kErl~~~D----~~--   76 (159)
                      ..++ +++++.+++++ |... .++|-|. +.++++++- ++. +.|..+.+....+.   .++--|-...+    +.  
T Consensus        78 ~~~~~~~~~~~v~~~l~d~~~-r~~Wd~~-~~~~~vle~i~~~-~~i~y~~~~~p~p~s~RDfV~~r~~~~~~~~~~~g~  154 (255)
T 2e3n_A           78 THAVKGVTGHEVCNYFWNVDV-RNDWETT-IENFHVVETLADN-AIIIYQTHKRVWPASQRDVLYLSVIRKIPALTENDP  154 (255)
T ss_dssp             EEEEETCCHHHHHHHHHCGGG-HHHHCCS-EEEEEEEEEEETT-EEEEEEEECCCTTSCCEEEEEEEEEEEECCSSTTSC
T ss_pred             EEEEcCCCHHHHHHHHhCcch-Hhhhhhh-cceeEEEEEcCCC-CEEEEEEeecCCCcCCceeEEEEEEEeccccccCCC
Confidence            4445 59999999999 9886 8999996 888888876 322 35666666532221   23333322222    21  


Q ss_pred             cc--eEEEEEEeccc--cCCCceeE----EEEEEEEEEC-C-------CCCeEEEEEEEEEEcCCCCCCHHHHH-hHHHH
Q 031431           77 NL--KLKYSVIEGND--LADYKLEK----ISFEHQWRAS-P-------NGGSICKTICKLHAKGEVEVTEEQAK-AGKER  139 (159)
Q Consensus        77 ~~--~~~y~v~eg~~--l~~Y~~~~----~~~~~~~~p~-~-------~g~t~v~W~~~~e~~~~~~~~~~~~~-~~~~~  139 (159)
                      +.  .+.+++--...  .+.|-.-.    .....-+.|. +       +++|.++|....+|.+.  .|.-.++ .++..
T Consensus       155 ~~~~i~~~Sv~~~~~P~~~g~VR~~~~~~~~~~~~i~~~~g~~~l~~~~~~t~vt~~~~~Dp~G~--iP~~lvn~~~~~~  232 (255)
T 2e3n_A          155 ETWIVCNFSVDHDSAPLNNRCVRAKINVAMICQTLVSPPEGNQEISRDNILCKITYVANVNPGGW--APASVLRAVAKRE  232 (255)
T ss_dssp             CEEEEEEEECCCTTSCCCSSSEECEEEEEEEEEEEEC---CCCCCCGGGEEEEEEEEEEEECSSC--CCHHHHHHHHHHH
T ss_pred             CEEEEEEeccCCCCCCCCCCCEEEEEEeeeeeeeEeccCCCCcccccCCCcEEEEEEEEeCCCCc--cCHHHHHHHHhcc
Confidence            11  12223221111  11221111    0011112231 1       24789999988888864  4444444 44555


Q ss_pred             HHHHHHHHHHHHhh
Q 031431          140 VLGVVKGVEAYLQA  153 (159)
Q Consensus       140 ~~~~~k~le~~l~~  153 (159)
                      ...+++.|.+|+.+
T Consensus       233 ~~~~l~~L~k~v~~  246 (255)
T 2e3n_A          233 YPKFLKRFTSYVQE  246 (255)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHH
Confidence            66788888887764

>1em2_A MLN64 protein; beta barrel, lipid binding protein; HET: TAR; 2.20A {Homo sapiens} SCOP: d.129.3.2

Probab=95.66  E-value=0.47  Score=35.63  Aligned_cols=146  Identities=9%  Similarity=-0.007  Sum_probs=79.4

Q ss_pred             EEEEEEEcCCHHHHH-hhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEec--CCc---eeEEEEEEEEEecccc
Q 031431            6 YESEETYAVPPARMF-NAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVE--GGQ---VKYAKHKIEEEDKVNL   78 (159)
Q Consensus         6 ~~~e~~i~apa~~vW-~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~--g~~---~~~~kErl~~~D~~~~   78 (159)
                      +..+..+++|+++++ .++ |... .++|-+. +.++++++--..--.|-.....+  ..+   -.++--|-...++...
T Consensus        68 ~k~~~~v~~~~~~v~~~~~~d~~~-r~~Wd~~-~~~~~vle~~~~~t~I~~~~~~p~~~~~~~~RDfv~~r~~~~~~~~~  145 (229)
T 1em2_A           68 FILKTFLPCPAELVYQEVILQPER-MVLWNKT-VTACQILQRVEDNTLISYDVSAGAAGGVVSPRDFVNVRRIERRRDRY  145 (229)
T ss_dssp             EEEEEEESSCHHHHHHHTTTCHHH-HTTTCTT-EEEEEEEEEETTTEEEEEEEECCBTTTTBCCEEEEEEEEEEECSSEE
T ss_pred             EEEEEEecCCHHHHHHHHHhCccc-hhhcccc-cceEEEEEecCCCeEEEEEEecCcCCCCcCCCeeEEEEEEEEcCCEE
Confidence            445667899999999 777 8776 7899996 88888876532111232222222  122   1233323233333332


Q ss_pred             eEEEEEEecccc---CCC-ceeEEEEEEEEEECC--CCCeEEEEEEEEEEcCCCCCCHHHHH-hHHHHHHHHHHHHHHHH
Q 031431           79 KLKYSVIEGNDL---ADY-KLEKISFEHQWRASP--NGGSICKTICKLHAKGEVEVTEEQAK-AGKERVLGVVKGVEAYL  151 (159)
Q Consensus        79 ~~~y~v~eg~~l---~~Y-~~~~~~~~~~~~p~~--~g~t~v~W~~~~e~~~~~~~~~~~~~-~~~~~~~~~~k~le~~l  151 (159)
                      .+...=++.+..   ..| +.......+.+.|.+  +++|.++|....++.+.  .|.-..+ .+......+++.|.+++
T Consensus       146 vi~~~Sv~~~~~P~~~~~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~--iP~~l~n~~~~~~~~~~~~~Lr~~~  223 (229)
T 1em2_A          146 LSSGIATSHSAKPPTHKYVRGENGPGGMIVLKSASNPRVCTFVWILNTDLKGR--LPRYLIHQSLAATMFEFAFHLRQRI  223 (229)
T ss_dssp             EEEEEECCCTTSCCCTTSEECEECSEEEEEEECSSCTTCEEEEEEECEECCSS--SCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEecccCCCCCCCCCCEeeeecccEEEEEecCCCCCcEEEEEEEEECCCCC--CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222211222211   111 111111234456743  35799999998888874  3444333 44556677888888887


Q ss_pred             hhCC
Q 031431          152 QANP  155 (159)
Q Consensus       152 ~~~~  155 (159)
                      .+.+
T Consensus       224 ~~~~  227 (229)
T 1em2_A          224 SELG  227 (229)
T ss_dssp             HHTT
T ss_pred             HHhc
Confidence            6643

>3fo5_A Thioesterase, adipose associated, isoform BFIT2; orthogonal bundle, consortium, lipid transport; HET: 1PE TCE; 2.00A {Homo sapiens}

Probab=95.21  E-value=0.086  Score=41.27  Aligned_cols=147  Identities=13%  Similarity=0.121  Sum_probs=77.8

Q ss_pred             EEEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCC-CCCCcEEEEEEecC-C---ceeEEEEEEEEE--ec
Q 031431            4 VTYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGN-GGPGSIKKFTIVEG-G---QVKYAKHKIEEE--DK   75 (159)
Q Consensus         4 ~~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~-g~~GsvR~~~~~~g-~---~~~~~kErl~~~--D~   75 (159)
                      ..+..+.+|++|++.||+++ |... .+.|.+. +.++++++-- +. -.|-++....- +   +-.++--|...-  ++
T Consensus        88 l~~k~~~~v~~~~~~v~~~L~D~~~-R~~WD~~-~~~~~vle~id~~-~ivY~~~~p~~~~~v~~RDFV~lr~~r~~~~~  164 (258)
T 3fo5_A           88 LSFHMEMVVHVDAAQAFLLLSDLRQ-RPEWDKH-YRSVELVQQVDED-DAIYHVTSPALGGHTKPQDFVILASRRKPCDN  164 (258)
T ss_dssp             EEEEEEEEESSCHHHHHHHHHCGGG-GGGTCTT-CCEEEEEEEEETT-EEEEEEEECCCTTCSSCEEEEEEEEEECCSST
T ss_pred             eEEEEEEEEeCCHHHHHHHHhCchh-HhHhhhh-ccEEEEEEEcCCC-eEEEEEecCCccCCCCCCEEEEEEEEEeccCC
Confidence            35677888999999999999 9887 7999996 8888877532 22 12334443321 1   113444343322  12


Q ss_pred             cc-ceEEEEEEecc---ccCCC-ceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHHHh--H-HHHHHHHHHHH
Q 031431           76 VN-LKLKYSVIEGN---DLADY-KLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAKA--G-KERVLGVVKGV  147 (159)
Q Consensus        76 ~~-~~~~y~v~eg~---~l~~Y-~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~~~--~-~~~~~~~~k~l  147 (159)
                      .+ ..+...=++-+   ..++| +.......+.+.|.++++|.+.+...-+|.  . . |-....  . -......++.+
T Consensus       165 G~~yvi~~~SV~hp~~Pp~~g~VR~~~~~sg~~I~P~~~~~t~VtY~~q~dpG--~-l-P~~~~n~~g~s~~~~~t~~~~  240 (258)
T 3fo5_A          165 GDPYVIALRSVTLPTHRETPEYRRGETLCSGFCLWREGDQLTKVSYYNQATPG--V-L-NYVTTNVAGLSSEFYTTFKAC  240 (258)
T ss_dssp             TCCEEEEEEEEECTTSCCCTTSEECCCSSEEEEEEEEETTEEEEEEEESCCGG--G-H-HHHHHHHHTSCCHHHHHHHHH
T ss_pred             CCEEEEEEEeccCCCCCCCCCCEEEEEcCcEEEEEECCCCCEEEEEEEeeCCC--C-C-CceEEeccccchHHHHHHHHH
Confidence            22 23332222221   11111 111111234457877778999887666652  1 1 111110  0 01224567789


Q ss_pred             HHHHhhCCCC
Q 031431          148 EAYLQANPDV  157 (159)
Q Consensus       148 e~~l~~~~~~  157 (159)
                      .+||.++.+.
T Consensus       241 ~~fl~~~~~~  250 (258)
T 3fo5_A          241 EQFLLDNRND  250 (258)
T ss_dssp             HHHHHHTC--
T ss_pred             HHHHHhcccc
Confidence            9999988764

>2r55_A STAR-related lipid transfer protein 5; alpha and beta protein, cholesterol binding, structural GENO structural genomics consortium, SGC; 2.50A {Homo sapiens}

Probab=93.42  E-value=1.8  Score=32.32  Aligned_cols=146  Identities=7%  Similarity=-0.017  Sum_probs=79.6

Q ss_pred             EEEEEEEEcCCHHHHHhhh-c--CCCCcccccCCceeEEEEEcCCCCCCcEEEEEEec--CCc---eeEEEEEEEEEecc
Q 031431            5 TYESEETYAVPPARMFNAL-A--SDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVE--GGQ---VKYAKHKIEEEDKV   76 (159)
Q Consensus         5 ~~~~e~~i~apa~~vW~~~-d--~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~--g~~---~~~~kErl~~~D~~   76 (159)
                      .+..+..+++|++++++++ +  ... .++|.+. +.++++++--.+...|-.....+  +.+   -.++--|-...++.
T Consensus        68 ~~k~~~~v~~~~~~v~~~l~~~d~~~-r~~Wd~~-~~~~~vle~i~~~~~i~~~~~~~~~~~~v~~RDfv~~r~~~~~~~  145 (231)
T 2r55_A           68 LYRGEGIVYGTLEEVWDCVKPAVGGL-RVKWDEN-VTGFEIIQSITDTLCVSRTSTPSAAMKLISPRDFVDLVLVKRYED  145 (231)
T ss_dssp             EEEEEEEESSCHHHHHHHHCC--CCS-HHHHCTT-CSEEEEEEECSSSEEEEEEECCCBTTTTBCCEEEEEEEEEEECTT
T ss_pred             EEEEEEEECCCHHHHHHHHHhhCcch-hhhhccc-cceeEEEEEcCCCEEEEEEEeccccCCccCCCeEEEEEEEEEcCC
Confidence            3566778899999999999 4  454 7899986 77888776543222332211111  111   13333333333333


Q ss_pred             c-ceE-EEEEEeccc---cCCCc-eeEEEEEEEEEECC--CCCeEEEEEEEEEEcCCCCCCHHHHH-hHHHHHHHHHHHH
Q 031431           77 N-LKL-KYSVIEGND---LADYK-LEKISFEHQWRASP--NGGSICKTICKLHAKGEVEVTEEQAK-AGKERVLGVVKGV  147 (159)
Q Consensus        77 ~-~~~-~y~v~eg~~---l~~Y~-~~~~~~~~~~~p~~--~g~t~v~W~~~~e~~~~~~~~~~~~~-~~~~~~~~~~k~l  147 (159)
                      + ..+ ..++ +-+.   .+.|- .......+.+.|.+  +++|.++|....++.+.  .|...++ .+......+++.|
T Consensus       146 g~~vi~~~Sv-~~~~~P~~~~~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~--iP~~lvn~~~~~~~~~~~~~L  222 (231)
T 2r55_A          146 GTISSNATHV-EHPLCPPKPGFVRGFNHPCGCFCEPLPGEPTKTNLVTFFHTDLSGY--LPQNVVDSFFPRSMTRFYANL  222 (231)
T ss_dssp             SCEEEEEEEC-CCTTSCCCTTCEEEEECSEEEEEEECC--CCCEEEEEEECEECCSS--CCHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEEEec-cCCCCCCCCCCEEEEEEeeEEEEEEeCCCCCcEEEEEEEEeCCCCC--ccHHHHHHHHhHhHHHHHHHH
Confidence            2 222 2222 2211   22221 11111223456754  45899999998888875  3344444 4445557788888


Q ss_pred             HHHHhhCC
Q 031431          148 EAYLQANP  155 (159)
Q Consensus       148 e~~l~~~~  155 (159)
                      .+++.+.+
T Consensus       223 r~~~~~~~  230 (231)
T 2r55_A          223 QKAVKQFH  230 (231)
T ss_dssp             HHHHHGGG
T ss_pred             HHHHHHhc
Confidence            88876644

>2pso_A STAR-related lipid transfer protein 13; alpha and beta protein, lipid binding, helix swapping, struc genomics, structural genomics consortium, SGC; 2.80A {Homo sapiens} SCOP: d.129.3.2

Probab=93.09  E-value=2.2  Score=32.40  Aligned_cols=143  Identities=14%  Similarity=0.109  Sum_probs=79.8

Q ss_pred             EEEEEEEEcCCHHHHHhhh--cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEecCCc---eeEEEEEEEEE--eccc
Q 031431            5 TYESEETYAVPPARMFNAL--ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQ---VKYAKHKIEEE--DKVN   77 (159)
Q Consensus         5 ~~~~e~~i~apa~~vW~~~--d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~---~~~~kErl~~~--D~~~   77 (159)
                      .+..+.+|++++++++..+  |    .++|.|. +.++++++--+.--.|-...+..-.+   -.++--|-...  ++..
T Consensus        76 ~~K~~~~v~~~~~~v~~~ll~d----r~~Wd~~-~~~~~vle~id~~~~I~y~~~~~p~p~~~RDfv~~r~~r~~~~~g~  150 (237)
T 2pso_A           76 LWKASVEVEAPPSVVLNRVLRE----RHLWDED-FVQWKVVETLDRQTEIYQYVLNSMAPHPSRDFVVLRTWKTDLPKGM  150 (237)
T ss_dssp             EEEEEEEESSCHHHHHHHHHHC----GGGTCTT-BCCCEEEEEEETTEEEEEEEECCSSSCCCEEEEEEEEEESCCGGGC
T ss_pred             EEEEEEEEcCChHHHHHHHHhh----hhhHHhh-hceEEEEEEcCCCcEEEEEEecCCCCcCCeEEEEEEEEEEECCCCE
Confidence            4677889999999987654  6    4799996 77777776521111243444432211   13333333322  3444


Q ss_pred             ceEEEEEEeccccC--CC-ceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHHHhHHHHHHHHHHHHHHHHhhC
Q 031431           78 LKLKYSVIEGNDLA--DY-KLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQAN  154 (159)
Q Consensus        78 ~~~~y~v~eg~~l~--~Y-~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~~~~~~~~~~~~k~le~~l~~~  154 (159)
                      ..+...-++.+-.+  +| +.......+.+.|.++++|.++|....++.+..+  .-..+.+.......++.|-+++.+.
T Consensus       151 ~vi~~~Sv~h~~~P~~g~VR~~~~~~g~~i~P~~~~~t~vt~~~~~Dp~G~iP--~~ln~~~~~~~~~~l~~LR~~~~~~  228 (237)
T 2pso_A          151 CTLVSLSVEHEEAQLLGGVRAVVMDSQYLIEPCGSGKSRLTHICRIDLKGHSP--EWYSKGFGHLCAAEVARIRNSFQPL  228 (237)
T ss_dssp             EEEEEEECCCTTCCCCSSEECCEEEEEEEEEECSTTCEEEEEEEEECCSSSCT--TTTTTHHHHHHHHHHHHHHHTTSCC
T ss_pred             EEEEEEcccCCCCCCCCcEEEEEeccEEEEEECCCCCEEEEEEEEeCCCCCch--HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            44433333322111  11 2233334555688877789999999999986432  2223344455566777777776553

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	159
d1fm4a_	159	d.129.3.1 (A:) Major tree pollen allergen {Europea	2e-50
d1e09a_	159	d.129.3.1 (A:) Major tree pollen allergen {Sweet c	2e-49
d1xdfa1	157	d.129.3.1 (A:1-157) Plant pathogenesis-related pro	4e-48
d2bk0a1	153	d.129.3.1 (A:2-154) Major allergen api g 1 {Celery	7e-45
d1icxa_	155	d.129.3.1 (A:) Plant pathogenesis-related protein	2e-43
d1txca1	147	d.129.3.1 (A:1-147) Plant pathogenesis-related pro	3e-36
d1vjha_	120	d.129.3.1 (A:) Hypothetical protein At1G24000 {Tha	2e-10

>d1fm4a_ d.129.3.1 (A:) Major tree pollen allergen {European white birch (Betula pendula), Bet v 1-l [TaxId: 3505]} Length = 159

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Major tree pollen allergen
species: European white birch (Betula pendula), Bet v 1-l [TaxId: 3505]

 Score =  156 bits (396), Expect = 2e-50
 Identities = 74/160 (46%), Positives = 94/160 (58%), Gaps = 3/160 (1%)

Query: 2   GVVTYESEETYAVPPARMFNALASD--NLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVE 59
           GV  YE+E T  +P ARMF A   D   L  K+ P  + +VE +EGNGGPG+IKK    E
Sbjct: 1   GVFNYETEATSVIPAARMFKAFILDGDKLVPKVAPQAISSVENIEGNGGPGTIKKINFPE 60

Query: 60  GGQVKYAKHKIEEEDKVNLKLKYSVIEGNDLADYKLEKISFEHQWRASPNGGSICKTICK 119
           G   KY K +++E D  N K  YSVIEG  + D  LEKIS E +  A+P+GG + K   K
Sbjct: 61  GFPFKYVKDRVDEVDHTNFKYNYSVIEGGPVGD-TLEKISNEIKIVATPDGGCVLKISNK 119

Query: 120 LHAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQANPDVCN 159
            H KG  EV  EQ KA KE    +++ VE+YL A+ D  N
Sbjct: 120 YHTKGNHEVKAEQVKASKEMGETLLRAVESYLLAHSDAYN 159

>d1e09a_ d.129.3.1 (A:) Major tree pollen allergen {Sweet cherry (Prunus avium), pru av 1 [TaxId: 42229]} Length = 159

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Major tree pollen allergen
species: Sweet cherry (Prunus avium), pru av 1 [TaxId: 42229]

 Score =  154 bits (390), Expect = 2e-49
 Identities = 82/160 (51%), Positives = 103/160 (64%), Gaps = 3/160 (1%)

Query: 2   GVVTYESEETYAVPPARMFNALASD--NLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVE 59
           GV TYESE T  +PP R+F A   D  NL  KI P  +K+ E+LEG+GGPG+IKK T  E
Sbjct: 1   GVFTYESEFTSEIPPPRLFKAFVLDADNLVPKIAPQAIKHSEILEGDGGPGTIKKITFGE 60

Query: 60  GGQVKYAKHKIEEEDKVNLKLKYSVIEGNDLADYKLEKISFEHQWRASPNGGSICKTICK 119
           G Q  Y KHKI+  DK N    Y++IEG+ L D  LEKIS+E +  ASP+GGSI K+   
Sbjct: 61  GSQYGYVKHKIDSIDKENYSYSYTLIEGDALGD-TLEKISYETKLVASPSGGSIIKSTSH 119

Query: 120 LHAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQANPDVCN 159
            H KG VE+ EE  KAGKE+   + K +E YL+ +PD  N
Sbjct: 120 YHTKGNVEIKEEHVKAGKEKASNLFKLIETYLKGHPDAYN 159

>d1xdfa1 d.129.3.1 (A:1-157) Plant pathogenesis-related protein PR10 {Yellow lupine (Lupinus luteus) [TaxId: 3873]} Length = 157

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Plant pathogenesis-related protein PR10
species: Yellow lupine (Lupinus luteus) [TaxId: 3873]

 Score =  150 bits (381), Expect = 4e-48
 Identities = 69/157 (43%), Positives = 97/157 (61%), Gaps = 4/157 (2%)

Query: 2   GVVTYESEETYAVPPARMFNALASD--NLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVE 59
           GV T+E E T  + PAR++ AL  D   +  K   + ++++E +EGNGGPG+IKK T++E
Sbjct: 1   GVFTFEDESTSTIAPARLYKALVKDADAIIPK-AVEAIQSIETVEGNGGPGTIKKLTLIE 59

Query: 60  GGQVKYAKHKIEEEDKVNLKLKYSVIEGNDLADYKLEKISFEHQWRASPNGGSICKTICK 119
           GG+ KY  HKIE  D+ NL+  YS++ G  L D  +EKISFE +     NGGSI K   K
Sbjct: 60  GGETKYVLHKIEAVDEANLRYNYSIVGGVGLPD-TIEKISFETKLVEGANGGSIGKVTIK 118

Query: 120 LHAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQANPD 156
           +  KG+ +  EE+ KA K R     K +E YL A+P+
Sbjct: 119 IETKGDAQPNEEEGKAAKARGDAFFKAIENYLSAHPE 155

>d2bk0a1 d.129.3.1 (A:2-154) Major allergen api g 1 {Celery (Apium graveolens) [TaxId: 4045]} Length = 153

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Major allergen api g 1
species: Celery (Apium graveolens) [TaxId: 4045]

 Score =  142 bits (360), Expect = 7e-45
 Identities = 55/155 (35%), Positives = 81/155 (52%), Gaps = 4/155 (2%)

Query: 2   GVVTYESEETYAVPPARMFNALA--SDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVE 59
           GV T+  E T +V   ++F       D +  K  P   K+VE+ +G+GGPG++K  T+ +
Sbjct: 1   GVQTHVLELTSSVSAEKIFQGFVIDVDTVLPKAAPGAYKSVEI-KGDGGPGTLKIITLPD 59

Query: 60  GGQVKYAKHKIEEEDKVNLKLKYSVIEGNDLADYKLEKISFEHQWRASPNGGSICKTICK 119
           GG +     +I+  +K  L   YSVI+G+ L    +E I        + +GGSICKT   
Sbjct: 60  GGPITTMTLRIDGVNKEALTFDYSVIDGDILLG-FIESIENHVVLVPTADGGSICKTTAI 118

Query: 120 LHAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQAN 154
            H KG+  V EE  K   E+   + K +EAYL AN
Sbjct: 119 FHTKGDAVVPEENIKYANEQNTALFKALEAYLIAN 153

>d1icxa_ d.129.3.1 (A:) Plant pathogenesis-related protein PR10 {Yellow lupine (Lupinus luteus) [TaxId: 3873]} Length = 155

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Plant pathogenesis-related protein PR10
species: Yellow lupine (Lupinus luteus) [TaxId: 3873]

 Score =  138 bits (350), Expect = 2e-43
 Identities = 59/157 (37%), Positives = 91/157 (57%), Gaps = 5/157 (3%)

Query: 2   GVVTYESEETYAVPPARMFNALASD--NLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVE 59
           G+  +E+E++  V PA+++ AL  D   +  K+   +    E++EGNGGPG+IKK   + 
Sbjct: 1   GIFAFENEQSSTVAPAKLYKALTKDSDEIVPKVIEPIQSV-EIVEGNGGPGTIKKIIAIH 59

Query: 60  GGQVKYAKHKIEEEDKVNLKLKYSVIEGNDLADYKLEKISFEHQWRASPNGGSICKTICK 119
            G   +  HK++  D+ NL   YS+I G  L +  LEKIS+E +    P+GGSI K   K
Sbjct: 60  DGHTSFVLHKLDAIDEANLTYNYSIIGGEGLDE-SLEKISYESKILPGPDGGSIGKINVK 118

Query: 120 LHAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQANPD 156
            H KG+V ++E      K + LG+ K +E Y+ A+PD
Sbjct: 119 FHTKGDV-LSETVRDQAKFKGLGLFKAIEGYVLAHPD 154

>d1txca1 d.129.3.1 (A:1-147) Plant pathogenesis-related protein PR10 {Jicama (Pachyrhizus erosus), SPE-16 [TaxId: 109171]} Length = 147

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Plant pathogenesis-related protein PR10
species: Jicama (Pachyrhizus erosus), SPE-16 [TaxId: 109171]

 Score =  120 bits (302), Expect = 3e-36
 Identities = 49/149 (32%), Positives = 80/149 (53%), Gaps = 4/149 (2%)

Query: 2   GVVTYESEETYAVPPARMFNALASD--NLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVE 59
           GV  +  E + +V PA+++ AL  D   +  +     ++++E++EGNGG G+IKK T  E
Sbjct: 1   GVFVFRDETSSSVAPAKLYKALTKDSDTIA-QKIDGPIQSIELVEGNGGVGTIKKITANE 59

Query: 60  GGQVKYAKHKIEEEDKVNLKLKYSVIEGNDLADYKLEKISFEHQWRASPNGGSICKTICK 119
           G +  +   K++  D+ NL   YS++ G  L +  LEK+SFE +  A   GGSI K   K
Sbjct: 60  GDKTSFVLQKVDAIDEANLGYDYSIVGGTGLPE-SLEKLSFETKVVAGSGGGSISKVTLK 118

Query: 120 LHAKGEVEVTEEQAKAGKERVLGVVKGVE 148
            H KG+  +++        +  G  K +E
Sbjct: 119 FHTKGDAPLSDAVRDDALAKGAGFFKAIE 147

>d1vjha_ d.129.3.1 (A:) Hypothetical protein At1G24000 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 120

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Hypothetical protein At1G24000
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 53.2 bits (128), Expect = 2e-10
 Identities = 11/94 (11%), Positives = 22/94 (23%), Gaps = 6/94 (6%)

Query: 59  EGGQVKYAKHKIEEEDKVNLKLKYSVIEGNDLADYKLEKISFEHQWRASPNG-GSICKTI 117
                K  K +IE  D V   +   +        +K   +           G GS     
Sbjct: 29  NRPFEKNGKTEIEAVDLVKKTMTIQMSGSEIQKYFK--TLKGSIAVTPIGVGDGSHVVWT 86

Query: 118 CKLHAKGEVEVTEEQAKAGKERVLGVVKGVEAYL 151
                  +            +  +   K ++  +
Sbjct: 87  FHFEKVHKDIDDPHSI---IDESVKYFKKLDEAI 117

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	159
d1fm4a_	159	Major tree pollen allergen {European white birch (	100.0
d1e09a_	159	Major tree pollen allergen {Sweet cherry (Prunus a	100.0
d1xdfa1	157	Plant pathogenesis-related protein PR10 {Yellow lu	100.0
d2bk0a1	153	Major allergen api g 1 {Celery (Apium graveolens)	100.0
d1icxa_	155	Plant pathogenesis-related protein PR10 {Yellow lu	100.0
d1txca1	147	Plant pathogenesis-related protein PR10 {Jicama (P	100.0
d1vjha_	120	Hypothetical protein At1G24000 {Thale cress (Arabi	99.94
d3cnwa1	138	Uncharacterized protein XoxI {Bacillus cereus [Tax	99.93
d2d4ra1	146	Hypothetical protein TTHA0849 {Thermus thermophilu	99.63
d2b79a1	137	Hypothetical protein SMU440 {Streptococcus mutans	99.6
d2rera1	155	Multifunctional enzyme TcmN, cyclase/aromatase dom	99.56
d2ns9a1	147	Hypothetical protein APE2225 {Aeropyrum pernix [Ta	99.45
d2pcsa1	147	Hypothetical protein GKP20 {Geobacillus kaustophil	99.3
d1xuva_	163	Hypothetical protein MM0500 {Methanosarcina mazei	99.06
d2qpva1	133	Uncharacterized protein Atu1531 {Agrobacterium tum	98.99
d2il5a1	164	Hypothetical protein SA2116 {Staphylococcus aureus	98.91
d1t17a_	148	Hypothetical protein CC1736 {Caulobacter crescentu	98.84
d1z94a1	143	Hypothetical protein CV1439 {Chromobacterium viola	98.73
d1xfsa_	165	Hypothetical protein NE0264 {Nitrosomonas europaea	98.58
d3elia1	143	Uncharacterized protein SPO3351 {Silicibacter pome	98.55
d2nn5a1	160	Hypothetical protein EF2215 {Enterococcus faecalis	98.21
d1xn5a_	138	Hypothetical protein BH1534 {Bacillus halodurans [	98.16
d1zxfa1	155	Calicheamicin gene cluster protein CalC {Micromono	98.12
d1xn6a_	143	Hypothetical protein BC4709 {Bacillus cereus [TaxI	97.97
d2k5ga1	183	Uncharacterized protein BPP1335 {Bordetella parape	97.97
d1x53a1	132	Activator of 90 kda heat shock protein ATPase homo	97.66
d1jssa_	199	Cholesterol-regulated Start protein 4 (Stard4). {M	97.55
d2ffsa1	151	Hypothetical protein PA1206 {Pseudomonas aeruginos	97.29
d1em2a_	214	Lipid transport domain of Mln64 {Human (Homo sapie	97.16
d1ln1a_	203	Phosphatidylcholine transfer protein {Human (Homo	96.4
d2psoa1	197	Star-related lipid transfer protein 13 {Human (Hom	86.97

>d1fm4a_ d.129.3.1 (A:) Major tree pollen allergen {European white birch (Betula pendula), Bet v 1-l [TaxId: 3505]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Major tree pollen allergen
species: European white birch (Betula pendula), Bet v 1-l [TaxId: 3505]

Probab=100.00  E-value=1.8e-47  Score=283.65  Aligned_cols=156  Identities=43%  Similarity=0.668  Sum_probs=144.8

Q ss_pred             ccEEEEEEEEEcCCHHHHHhhh--cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEecCCceeEEEEEEEEEecccce
Q 031431            2 GVVTYESEETYAVPPARMFNAL--ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQVKYAKHKIEEEDKVNLK   79 (159)
Q Consensus         2 ~~~~~~~e~~i~apa~~vW~~~--d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~   79 (159)
                      |+.+++.|+++++||+|+|+++  |+++++|+|+|+.+++|++++|+|++||||.|+|..|++..++||||+.+|+++|+
T Consensus         1 Gv~~~e~E~~~~v~a~k~~k~~~~d~~~l~pk~~p~~i~~ie~~eGdg~~GsIr~~~~~~~~~~~~~Kerve~iD~~~~~   80 (159)
T d1fm4a_           1 GVFNYETEATSVIPAARMFKAFILDGDKLVPKVAPQAISSVENIEGNGGPGTIKKINFPEGFPFKYVKDRVDEVDHTNFK   80 (159)
T ss_dssp             CEEEEEEEEEESSCHHHHHHHHTTTHHHHHHHHCTTTCCEEEEEECSSSTTCEEEEECCTTSSSSEEEEEEEEEETTTTE
T ss_pred             CceEEEEEeeccCCHHHHHHHHHhCcccccccccCcceEEEEEECCCCCCCCEEEEEecCCCCceEEEEEEEEEcccccE
Confidence            7899999999999999999986  99998899999999999999999999999999999999889999999999999999


Q ss_pred             EEEEEEecccc-CCCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHHHhHHHHHHHHHHHHHHHHhhCCCCC
Q 031431           80 LKYSVIEGNDL-ADYKLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQANPDVC  158 (159)
Q Consensus        80 ~~y~v~eg~~l-~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~~~~~~~~~~~~k~le~~l~~~~~~y  158 (159)
                      ++|+++||+.+ ..|++++++  ++|+|.++|+|+++|+++|++.++..++++.++..++.+.+|+|+||+||++||++|
T Consensus        81 ~~y~viEGd~l~~~~~s~~~~--~k~~~~~~gg~v~kwt~eYe~~~~~~~~~e~~k~~ke~~~~~~K~iE~YLlanp~~y  158 (159)
T d1fm4a_          81 YNYSVIEGGPVGDTLEKISNE--IKIVATPDGGCVLKISNKYHTKGNHEVKAEQVKASKEMGETLLRAVESYLLAHSDAY  158 (159)
T ss_dssp             EEEEEEEBTTBTTTEEEEEEE--EEEEECTTSCEEEEEEEEEEESTTCCCCTTTTHHHHHHHHHHHHHHHHHHHHCTTTT
T ss_pred             EEEEEEeccccccceEEEEEE--EEEecCCCCceEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhChhhc
Confidence            99999999975 457776665  467999899999999999999999888888888889999999999999999999999


Q ss_pred             C
Q 031431          159 N  159 (159)
Q Consensus       159 ~  159 (159)
                      |
T Consensus       159 ~  159 (159)
T d1fm4a_         159 N  159 (159)
T ss_dssp             C
T ss_pred             C
Confidence            8

>d1e09a_ d.129.3.1 (A:) Major tree pollen allergen {Sweet cherry (Prunus avium), pru av 1 [TaxId: 42229]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Major tree pollen allergen
species: Sweet cherry (Prunus avium), pru av 1 [TaxId: 42229]

Probab=100.00  E-value=2.8e-47  Score=282.61  Aligned_cols=156  Identities=49%  Similarity=0.783  Sum_probs=144.5

Q ss_pred             ccEEEEEEEEEcCCHHHHHhhh--cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEecCCceeEEEEEEEEEecccce
Q 031431            2 GVVTYESEETYAVPPARMFNAL--ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQVKYAKHKIEEEDKVNLK   79 (159)
Q Consensus         2 ~~~~~~~e~~i~apa~~vW~~~--d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~   79 (159)
                      |+.+++.|+++++||+|+|+++  |+++++|+++|+.+++|++++|||++||||.|+|.+|++..++||||+.+|+++|+
T Consensus         1 gv~~~~~E~~~~vpa~k~~k~~~~d~~~l~pk~~p~~i~~ie~~eGdg~~GsIr~~~~~~~~~~~~~KErie~iD~~~~~   80 (159)
T d1e09a_           1 GVFTYESEFTSEIPPPRLFKAFVLDADNLVPKIAPQAIKHSEILEGDGGPGTIKKITFGEGSQYGYVKHKIDSIDKENYS   80 (159)
T ss_dssp             CEEEEEEEEEESSCHHHHHHHHTTTHHHHHHHHCTTTEEEEEEEESSSSTTCEEEEEECCSSSCEEEEEEEEEEETTTTE
T ss_pred             CceEEEEEEeecCCHHHHHHHHhcChhhcCcccCCcceeEEEEEcCCCCcCcEEEEEEcCCCCcEEEEEEEEEEcccccE
Confidence            7899999999999999999986  99998899999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEeccccC-CCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHHHhHHHHHHHHHHHHHHHHhhCCCCC
Q 031431           80 LKYSVIEGNDLA-DYKLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQANPDVC  158 (159)
Q Consensus        80 ~~y~v~eg~~l~-~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~~~~~~~~~~~~k~le~~l~~~~~~y  158 (159)
                      ++|+++||+++. .|++++.  ++++.|.+++||+++|+++|++.++..++++..+..++.+..|+|+||+||++||++|
T Consensus        81 ~~y~viEGd~l~~~~~s~~~--~~~~~~~~~~g~vvkwt~eYe~~~~~~~~~e~~~~~~e~~~~~~K~iEayLlanp~~y  158 (159)
T d1e09a_          81 YSYTLIEGDALGDTLEKISY--ETKLVASPSGGSIIKSTSHYHTKGNVEIKEEHVKAGKEKASNLFKLIETYLKGHPDAY  158 (159)
T ss_dssp             EEEEECCCTTTGGGEEEEEE--EEEECCCTTSSEEEEEEEEEEECSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHCTTSC
T ss_pred             EEEEEEecccccccEEEEEE--EEEEccCCCCCcEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhChhhc
Confidence            999999999864 4666555  4466888888999999999999999888888888888999999999999999999999


Q ss_pred             C
Q 031431          159 N  159 (159)
Q Consensus       159 ~  159 (159)
                      |
T Consensus       159 ~  159 (159)
T d1e09a_         159 N  159 (159)
T ss_dssp             C
T ss_pred             C
Confidence            7

>d1xdfa1 d.129.3.1 (A:1-157) Plant pathogenesis-related protein PR10 {Yellow lupine (Lupinus luteus) [TaxId: 3873]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Plant pathogenesis-related protein PR10
species: Yellow lupine (Lupinus luteus) [TaxId: 3873]

Probab=100.00  E-value=2.7e-46  Score=276.46  Aligned_cols=154  Identities=42%  Similarity=0.713  Sum_probs=142.1

Q ss_pred             ccEEEEEEEEEcCCHHHHHhhh--cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEecCCceeEEEEEEEEEecccce
Q 031431            2 GVVTYESEETYAVPPARMFNAL--ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQVKYAKHKIEEEDKVNLK   79 (159)
Q Consensus         2 ~~~~~~~e~~i~apa~~vW~~~--d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~   79 (159)
                      |+.+++.|+++++||+|+|+++  |+++++|++ |+.|++|+++||||++||||.|+|..|++..++|||++.+|+++++
T Consensus         1 gv~t~~~E~~~~v~a~k~fka~~~d~~~l~pk~-p~~i~s~e~~eGdG~~GsIr~~~~~~g~~~~~~Kerie~vD~e~~~   79 (157)
T d1xdfa1           1 GVFTFEDESTSTIAPARLYKALVKDADAIIPKA-VEAIQSIETVEGNGGPGTIKKLTLIEGGETKYVLHKIEAVDEANLR   79 (157)
T ss_dssp             CEEEEEEEEEESSCHHHHHHHHHHSHHHHHHHH-CTTEEEEEEEESSSSTTCEEEEEEEETTEEEEEEEEEEEEEGGGTE
T ss_pred             CceEEEEEEeccCCHHHHHHHHhhchhhccccc-hhheecceeecCCCCCCcEEEEEEcCCCccEEEEEEEEEEechhcE
Confidence            7899999999999999999987  999988997 6689999999999999999999999999999999999999999999


Q ss_pred             EEEEEEeccccC-CCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHHHhHHHHHHHHHHHHHHHHhhCCCCC
Q 031431           80 LKYSVIEGNDLA-DYKLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQANPDVC  158 (159)
Q Consensus        80 ~~y~v~eg~~l~-~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~~~~~~~~~~~~k~le~~l~~~~~~y  158 (159)
                      ++|+++||+.|. .|++++.  +++++|.++|||+++|+++|++.++..++++.++.+++.+.+|+|++|+||++||| |
T Consensus        80 ~~y~viEGd~l~~~~~s~~~--~~k~~~~~~ggsv~k~t~eYe~~~~~~~~~e~ik~~~e~~~~~~K~iEaYLlanpd-y  156 (157)
T d1xdfa1          80 YNYSIVGGVGLPDTIEKISF--ETKLVEGANGGSIGKVTIKIETKGDAQPNEEEGKAAKARGDAFFKAIENYLSAHPE-Y  156 (157)
T ss_dssp             EEEEEESSTTSCTTEEEEEE--EEEEEECTTSSEEEEEEEEEEESSSSCCCHHHHHHHHHHHHTTTHHHHHHHHTSGG-G
T ss_pred             EEEEEEecccccccEEEEEE--EEEEEcCCCCceEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhCCC-C
Confidence            999999999864 4666555  55779998999999999999999998899998888899999999999999999998 8


Q ss_pred             C
Q 031431          159 N  159 (159)
Q Consensus       159 ~  159 (159)
                      |
T Consensus       157 ~  157 (157)
T d1xdfa1         157 N  157 (157)
T ss_dssp             C
T ss_pred             C
Confidence            7

>d2bk0a1 d.129.3.1 (A:2-154) Major allergen api g 1 {Celery (Apium graveolens) [TaxId: 4045]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Major allergen api g 1
species: Celery (Apium graveolens) [TaxId: 4045]

Probab=100.00  E-value=8.7e-44  Score=262.14  Aligned_cols=150  Identities=35%  Similarity=0.545  Sum_probs=139.4

Q ss_pred             ccEEEEEEEEEcCCHHHHHhhh--cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEecCCceeEEEEEEEEEecccce
Q 031431            2 GVVTYESEETYAVPPARMFNAL--ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQVKYAKHKIEEEDKVNLK   79 (159)
Q Consensus         2 ~~~~~~~e~~i~apa~~vW~~~--d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~   79 (159)
                      |+.+++.|+++++||+|+|+++  |+++++|+++|+++++|+ ++|||++||||.|+|..|++...+|||++++|+++|+
T Consensus         1 gv~t~e~E~~~~v~a~k~~ka~~~d~~~l~Pk~~P~~i~sve-veGdG~~GsIr~~~~~~~~~~~~~Kerve~iD~~~~~   79 (153)
T d2bk0a1           1 GVQTHVLELTSSVSAEKIFQGFVIDVDTVLPKAAPGAYKSVE-IKGDGGPGTLKIITLPDGGPITTMTLRIDGVNKEALT   79 (153)
T ss_dssp             CEEEEEEEEEESSCHHHHHHHHTTSHHHHHHHHCGGGCSEEE-EESSSSTTCEEEEECCTTSSCCEEEEEEEEEETTTTE
T ss_pred             CceEEEEEEeccCCHHHHHHHHhhcccccccccccceeeEEE-EECCCCCCeEEEEEEecCccceeeEEEEEEEecCccE
Confidence            6889999999999999999987  889888999999999999 5999999999999999999999999999999999999


Q ss_pred             EEEEEEecccc-CCCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHHHhHHHHHHHHHHHHHHHHhhC
Q 031431           80 LKYSVIEGNDL-ADYKLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQAN  154 (159)
Q Consensus        80 ~~y~v~eg~~l-~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~~~~~~~~~~~~k~le~~l~~~  154 (159)
                      ++|+++||+.+ ..|++++.+  ++++|.++|+|+++|+++|++.++..++|+.++..++.+.+|+|+||+||++|
T Consensus        80 ~~y~viEGd~l~~~y~s~~~~--~~~~~~~~ggsv~k~t~eYe~~~~~~~~~e~~k~~~e~~~~~~K~iE~YLlan  153 (153)
T d2bk0a1          80 FDYSVIDGDILLGFIESIENH--VVLVPTADGGSICKTTAIFHTKGDAVVPEENIKYANEQNTALFKALEAYLIAN  153 (153)
T ss_dssp             EEEEEEESGGGTTTEEEEEEE--EEEEECTTSCEEEEEEEEEEESTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             EEEEEEecccccccEEEEEEE--EEEecCCCCCeEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999975 567776664  46799998999999999999999988899999989999999999999999998

>d1icxa_ d.129.3.1 (A:) Plant pathogenesis-related protein PR10 {Yellow lupine (Lupinus luteus) [TaxId: 3873]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Plant pathogenesis-related protein PR10
species: Yellow lupine (Lupinus luteus) [TaxId: 3873]

Probab=100.00  E-value=1.2e-43  Score=261.79  Aligned_cols=152  Identities=37%  Similarity=0.702  Sum_probs=138.1

Q ss_pred             ccEEEEEEEEEcCCHHHHHhhh--cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEecCCceeEEEEEEEEEecccce
Q 031431            2 GVVTYESEETYAVPPARMFNAL--ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQVKYAKHKIEEEDKVNLK   79 (159)
Q Consensus         2 ~~~~~~~e~~i~apa~~vW~~~--d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~   79 (159)
                      |+.+++.|+++++||+|+|+++  |+++++|+++|. ++++++++|||++||||.|+|..|++..++|||++++|+++|+
T Consensus         1 Gv~t~~~E~~~~v~a~klfka~~~d~~~l~pk~~~~-i~s~e~~eGdGg~GsIk~~~~~~~~~~~~~Kerie~iD~en~~   79 (155)
T d1icxa_           1 GIFAFENEQSSTVAPAKLYKALTKDSDEIVPKVIEP-IQSVEIVEGNGGPGTIKKIIAIHDGHTSFVLHKLDAIDEANLT   79 (155)
T ss_dssp             CEEEEEEEEEESSCHHHHHHHHTTTHHHHHHHHSTT-EEEEEEEESSSSTTCEEEEEEESSSSEEEEEEEEEEEEGGGTE
T ss_pred             CceEEEEeEEecCCHHHHhhhheeccchhchhhhhh-eeeeeEecCCCccceEEEEEeccCCceEEEEEEEEEEcccccE
Confidence            7899999999999999999997  999988999996 9999999999999999999999999999999999999999999


Q ss_pred             EEEEEEeccccC-CCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHHHhHHHHHHHHHHHHHHHHhhCCCC
Q 031431           80 LKYSVIEGNDLA-DYKLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQANPDV  157 (159)
Q Consensus        80 ~~y~v~eg~~l~-~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~~~~~~~~~~~~k~le~~l~~~~~~  157 (159)
                      ++|+++||++|. .|++++  .++++.|.++|||+++|+++|++.++. .+++..+..++.+.+|+|++|+||++|||.
T Consensus        80 ~~y~viEGd~l~~~~~~~~--~~~k~~~~~~~g~i~k~t~eYe~~g~~-~~e~~~~~~ke~~~~~fK~iE~YLlanPd~  155 (155)
T d1icxa_          80 YNYSIIGGEGLDESLEKIS--YESKILPGPDGGSIGKINVKFHTKGDV-LSETVRDQAKFKGLGLFKAIEGYVLAHPDY  155 (155)
T ss_dssp             EEEEEEEETTSCTTEEEEE--EEEEEEECGGGCEEEEEEEEEEESSSS-CCHHHHTTHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             EEEEEEecccccccEEEEE--EEEEEecCCCCCeEEEEEEEEEECCCC-CChhhHHHHHHHHHHHHHHHHHHHhhCcCC
Confidence            999999999865 455554  455779998889999999999999875 556667778899999999999999999973

>d1txca1 d.129.3.1 (A:1-147) Plant pathogenesis-related protein PR10 {Jicama (Pachyrhizus erosus), SPE-16 [TaxId: 109171]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Plant pathogenesis-related protein PR10
species: Jicama (Pachyrhizus erosus), SPE-16 [TaxId: 109171]

Probab=100.00  E-value=3e-40  Score=241.79  Aligned_cols=144  Identities=31%  Similarity=0.562  Sum_probs=131.5

Q ss_pred             ccEEEEEEEEEcCCHHHHHhhh--cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEecCCceeEEEEEEEEEecccce
Q 031431            2 GVVTYESEETYAVPPARMFNAL--ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQVKYAKHKIEEEDKVNLK   79 (159)
Q Consensus         2 ~~~~~~~e~~i~apa~~vW~~~--d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~   79 (159)
                      |+.+++.|+++++||+|+|+++  |+++ ||+|+|+.|+++++++|||++||||.|+|.+|++..++||||+.+|+++|+
T Consensus         1 gv~~~~~E~~~~v~a~k~~ka~~~d~~~-l~~~~p~~i~s~e~~eGdg~~GsIr~~~~~~g~~~~~~kErl~~iD~~~~~   79 (147)
T d1txca1           1 GVFVFRDETSSSVAPAKLYKALTKDSDT-IAQKIDGPIQSIELVEGNGGVGTIKKITANEGDKTSFVLQKVDAIDEANLG   79 (147)
T ss_dssp             CEEEEEEEEEESSCHHHHHHHHHTTHHH-HHHHTTSSEEEEEEEESSSSTTCEEEEEEEETTEEEEEEEEEEEEEGGGTE
T ss_pred             CceEEEEEEeccCCHHHHHHhhhccccc-CccccccccccceeecCCCCcceEEEEEEcCCCcceEEEEEEEEEccCCcE
Confidence            7899999999999999999877  8888 688899999999999999999999999999999889999999999999999


Q ss_pred             EEEEEEeccccC-CCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHHHhHHHHHHHHHHHHH
Q 031431           80 LKYSVIEGNDLA-DYKLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAKAGKERVLGVVKGVE  148 (159)
Q Consensus        80 ~~y~v~eg~~l~-~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~~~~~~~~~~~~k~le  148 (159)
                      ++|+++||+++. .|.+|++  ++++.|.++|||+++|+++|++.++.++|++.++++++.+.+|+|++|
T Consensus        80 ~~y~iiEGd~l~~~~~s~~~--~~~~~~~~~ggs~vkw~~~y~~~~~~~~~ee~~k~~k~~~~~~~KavE  147 (147)
T d1txca1          80 YDYSIVGGTGLPESLEKLSF--ETKVVAGSGGGSISKVTLKFHTKGDAPLSDAVRDDALAKGAGFFKAIE  147 (147)
T ss_dssp             EEEEEEESTTSCTTEEEEEE--EEEEEECSTTCEEEEEEEEEEETTSCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEccCccccceEEEEE--EEEEecCCCCCcEEEEEEEEEECCCCCCCHHHHHHHHHHHhhhheecC
Confidence            999999999854 4555554  556799888899999999999999888999988889999999999997

>d1vjha_ d.129.3.1 (A:) Hypothetical protein At1G24000 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Hypothetical protein At1G24000
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.94  E-value=2.5e-26  Score=161.74  Aligned_cols=114  Identities=15%  Similarity=0.089  Sum_probs=96.5

Q ss_pred             cEEEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEecCCceeEEEEEEEEEecccceEE
Q 031431            3 VVTYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQVKYAKHKIEEEDKVNLKLK   81 (159)
Q Consensus         3 ~~~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~   81 (159)
                      .++++.+++|++||+++|+++ +... .| |                              ....|||++++|+++++++
T Consensus         4 ~gkl~~eveik~~a~kf~~~~~~~~~-~~-~------------------------------~~~~KerVe~vD~en~sit   51 (120)
T d1vjha_           4 KGALSVKFDVKCPADKFFSAFVEDTN-RP-F------------------------------EKNGKTEIEAVDLVKKTMT   51 (120)
T ss_dssp             EEEEEEEEEESSCHHHHHHHHHHHTT-SC-S------------------------------STTCEEEEEEEETTTTEEE
T ss_pred             ceEEEEEEEecCCHHHHHHHhhhccC-CC-C------------------------------CcccEEEEEEEcCCCCEEE
Confidence            489999999999999999999 6443 11 1                              0234899999999999999


Q ss_pred             EEEEeccccCCCceeEEEEEEEEEECCCC-CeEEEEEEEEEEcCCCCCCHHHHHhHHHHHHHHHHHHHHHHhh
Q 031431           82 YSVIEGNDLADYKLEKISFEHQWRASPNG-GSICKTICKLHAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQA  153 (159)
Q Consensus        82 y~v~eg~~l~~Y~~~~~~~~~~~~p~~~g-~t~v~W~~~~e~~~~~~~~~~~~~~~~~~~~~~~k~le~~l~~  153 (159)
                      |+++||+++..|++|+++++  ++|.++| ||+++|+++|++.++..|+|+.++   +++..|+|+||+||++
T Consensus        52 y~vieGdvl~~yksf~~~i~--~~p~~~g~gsi~kwt~eYek~~~~~p~p~~~~---e~~~~~~K~id~yLL~  119 (120)
T d1vjha_          52 IQMSGSEIQKYFKTLKGSIA--VTPIGVGDGSHVVWTFHFEKVHKDIDDPHSII---DESVKYFKKLDEAILN  119 (120)
T ss_dssp             EEEECTTGGGTEEEEEEEEE--EEECSSSSCEEEEEEEEEEESSTTSCCSHHHH---HHHHHHHHHHHHHHHH
T ss_pred             EEEEeeccccceeEEEEEEE--EEecCCCCceEEEEEEEEEeCCCCCCCHHHHH---HHHHHHHHHHHHHHhc
Confidence            99999999989999888764  5998876 899999999999988766666543   6999999999999997

>d3cnwa1 d.129.3.8 (A:3-140) Uncharacterized protein XoxI {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Atu1531-like
domain: Uncharacterized protein XoxI
species: Bacillus cereus [TaxId: 1396]

Probab=99.93  E-value=3.7e-24  Score=152.91  Aligned_cols=133  Identities=11%  Similarity=0.106  Sum_probs=105.0

Q ss_pred             EEEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEecCCceeEEEEEEEEEecccceEEE
Q 031431            4 VTYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQVKYAKHKIEEEDKVNLKLKY   82 (159)
Q Consensus         4 ~~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~y   82 (159)
                      .+++.+++|+|||++||+++ ||.+ +|+|+|. +.+|+..++    |++|.+++..|+   .+.|||+.+|+++|.++|
T Consensus         2 ~~~~~si~I~A~pe~VW~~v~df~~-~~~W~p~-v~~~~~~~~----G~~R~~~~~~g~---~~~E~l~~~d~~~~~~~y   72 (138)
T d3cnwa1           2 AHTTTSMEIFGSPEQVWQLIGGFNS-LPDWLPY-IPSSKLTEG----GRVRHLANPDGD---TIIERLEVFNDKERYYTY   72 (138)
T ss_dssp             EEEEEEEEESSCHHHHHHHHCCTTC-GGGTCTT-CSEEEEEGG----GTEEEEECTTCC---EEEEEEEEEETTTTEEEE
T ss_pred             CcEEEEEEEeCCHHHHHHHHhCccc-hHHHhcc-cceeEeecC----ceeEEEEecCCc---eeEEEEEEEeCCCcEEEE
Confidence            35899999999999999999 9998 7999996 889986533    899999998774   799999999999999999


Q ss_pred             EEEeccccCCCceeEEEEEEEEEECCCC-CeEEEEEEEEEEcCCCCCCHHHHH-hHHHHHHHHHHHHHHHHh
Q 031431           83 SVIEGNDLADYKLEKISFEHQWRASPNG-GSICKTICKLHAKGEVEVTEEQAK-AGKERVLGVVKGVEAYLQ  152 (159)
Q Consensus        83 ~v~eg~~l~~Y~~~~~~~~~~~~p~~~g-~t~v~W~~~~e~~~~~~~~~~~~~-~~~~~~~~~~k~le~~l~  152 (159)
                      ++++|++.  ++.|.+  +++|.|.++| +|.++|+++|+|.+.   +++.+. .........++.|++.++
T Consensus        73 ~~~~~~~p--~~~~~~--~~~l~p~~~g~~t~v~w~~~f~p~~~---~~~~~~~~~~~~~~~~l~~L~~~f~  137 (138)
T d3cnwa1          73 SIMNAPFP--VTNYLS--TIQVKEGTESNTSLVEWSGTFTPVEV---SDEEAINLFHGIYSDGLKALQQAFL  137 (138)
T ss_dssp             EEEECSSS--EEEEEE--EEEEEECSSTTCEEEEEEEEEEESSS---CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEecCCCc--ceeeEE--EEEEEECCCCCeEEEEEEEEEecCCC---CHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            99999761  244444  5567998764 699999999998653   333333 333445677888877654

>d2d4ra1 d.129.3.6 (A:2-147) Hypothetical protein TTHA0849 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: oligoketide cyclase/dehydrase-like
domain: Hypothetical protein TTHA0849
species: Thermus thermophilus [TaxId: 274]

Probab=99.63  E-value=4.1e-14  Score=99.60  Aligned_cols=138  Identities=17%  Similarity=0.184  Sum_probs=97.6

Q ss_pred             EEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEecCCceeEEEEEEEEEecccceEEEE
Q 031431            5 TYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQVKYAKHKIEEEDKVNLKLKYS   83 (159)
Q Consensus         5 ~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~y~   83 (159)
                      +++.++.|+||+++||+++ |+.+ +|+|+|. ++++++++++|. +....+.+...+.......++. .+++++.+.|+
T Consensus         2 ~v~~~~~I~ap~~~V~~~l~D~~~-~~~w~p~-~~~~~il~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~   77 (146)
T d2d4ra1           2 EVRAERYIPAPPERVYRLAKDLEG-LKPYLKE-VESLEVVAREGA-RTRSRWVAVAMGKKVRWLEEEE-WDDENLRNRFF   77 (146)
T ss_dssp             EEEEEEEESSCHHHHHHHHHCHHH-HGGGCTT-EEEEEEEEEETT-EEEEEEEEEETTEEEEEEEEEE-EETTTTEEEEE
T ss_pred             EEEEEEEECCCHHHHHHHHHChhh-HHhhccc-cEEEEEEEecCC-cceEEEEEEeeeeeEEEEEEEE-EcCCCCEEEEE
Confidence            5789999999999999999 9998 8999997 889998866542 3344445443333234455544 67888899999


Q ss_pred             EEeccccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCC--CCCCHHHHH-hHHHHHHHHHHHHHHHHhh
Q 031431           84 VIEGNDLADYKLEKISFEHQWRASPNGGSICKTICKLHAKGE--VEVTEEQAK-AGKERVLGVVKGVEAYLQA  153 (159)
Q Consensus        84 v~eg~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~--~~~~~~~~~-~~~~~~~~~~k~le~~l~~  153 (159)
                      +..|++    ..+..  +++|+|.++ ||.++|+.+|+...+  .......++ ...+....+++.|++.+.+
T Consensus        78 ~~~g~~----~~~~g--~w~l~~~~~-gT~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~  143 (146)
T d2d4ra1          78 SPEGDF----DRYEG--TWVFLPEGE-GTRVVLTLTYELTIPIFGGLLRKLVQKLMQENVESLLKGLEERVLA  143 (146)
T ss_dssp             EEEESC----SEEEE--EEEEEECSS-SEEEEEEEEEECCCTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EccCCc----ceEEE--EEEEEecCC-ceEEEEEEEEEEcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            998875    33444  445688754 699999999997543  223333333 4555667888888877655

>d2b79a1 d.129.3.9 (A:1-137) Hypothetical protein SMU440 {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Smu440-like
domain: Hypothetical protein SMU440
species: Streptococcus mutans [TaxId: 1309]

Probab=99.60  E-value=4.6e-14  Score=98.31  Aligned_cols=106  Identities=12%  Similarity=0.056  Sum_probs=81.0

Q ss_pred             EEEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEecCCceeEEEEEEEEEecccceEEE
Q 031431            4 VTYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQVKYAKHKIEEEDKVNLKLKY   82 (159)
Q Consensus         4 ~~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~y   82 (159)
                      ++++.++.|+||+|+||+++ |+.+ +|.|+|. +.+++. +|+.++|+...+++..+.   .+..++.++++.. ++++
T Consensus         1 m~~s~si~I~Ap~e~Vw~~~~d~~~-~~~W~~~-~~~~~~-~~~~~~G~~~~~~~~~~~---~~~~~v~~~~p~~-~~~~   73 (137)
T d2b79a1           1 MKFSFELAVNTKKEDAWTYYSQVNQ-WFVWEGD-LEQISL-EGEFTTGQKGKMKMEDMP---ELAFTLVEVRENQ-CFSD   73 (137)
T ss_dssp             EEEEEEEEESSCHHHHHHHHHCGGG-GGGTSTT-EEEEEE-SSSSSTTCEEEEEETTSC---CEEEEECCCBTTT-EEEE
T ss_pred             CceEEEEEEcCCHHHHHHHHhhhhh-CccccCc-ccceee-cccccceEEEEEEEcCCc---ceeeeeecccCCc-EEEE
Confidence            57999999999999999999 9998 8999996 888884 566678999888887664   4566788776655 5788


Q ss_pred             EEEeccccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEc
Q 031431           83 SVIEGNDLADYKLEKISFEHQWRASPNGGSICKTICKLHAK  123 (159)
Q Consensus        83 ~v~eg~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~  123 (159)
                      ....+ ..    ..  .....+.+.++|+|.++|+.+|...
T Consensus        74 ~~~~~-~~----~~--~~~~~~~~~~~g~t~vt~~~~~~g~  107 (137)
T d2b79a1          74 LTATP-FG----NV--LFEHEILENPDGTISLRHSVSLTDS  107 (137)
T ss_dssp             EEEET-TE----EE--EEEEEEEECTTSCEEEEEEEEECSC
T ss_pred             Eeccc-ce----ee--eeEEEEccCCCCcEEEEEEEecccc
Confidence            76432 21    12  2234457887888999999999753

>d2rera1 d.129.3.6 (A:1-155) Multifunctional enzyme TcmN, cyclase/aromatase domain {Streptomyces glaucescens [TaxId: 1907]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: oligoketide cyclase/dehydrase-like
domain: Multifunctional enzyme TcmN, cyclase/aromatase domain
species: Streptomyces glaucescens [TaxId: 1907]

Probab=99.56  E-value=3.7e-13  Score=95.21  Aligned_cols=140  Identities=12%  Similarity=0.174  Sum_probs=91.3

Q ss_pred             EEEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCC-CCCcEEEEEEecCCceeEEEEEEEEEecccceEE
Q 031431            4 VTYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNG-GPGSIKKFTIVEGGQVKYAKHKIEEEDKVNLKLK   81 (159)
Q Consensus         4 ~~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g-~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~   81 (159)
                      .+++.+++|+|||++||+++ |+.+ +|+|+|+ +.++++++.++ +.+....+....++.. ...+.....++..+.+.
T Consensus         3 ~~~e~si~I~Ap~~~Vw~~l~D~~~-~~~w~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~   79 (155)
T d2rera1           3 ARTDNSIVVNAPFELVWDVTNDIEA-WPELFSE-YAEAEILRQDGDGFDFRLKTRPDANGRV-WEWVSHRVPDKGSRTVR   79 (155)
T ss_dssp             EEEEEEEEESSCHHHHHHHHTCGGG-HHHHCSS-EEEEEEEECCSSCEEEEEEECCCTTSCC-CEEEEEEEEEGGGTEEE
T ss_pred             CEEEEEEEECCCHHHHHHHHHChhh-Hhhhhhh-ceEEEEeecCCCceEEEEEEEEeeeeee-EEEEEEEEEcCCccEEE
Confidence            46799999999999999999 9998 8999997 88888776653 2233333333333322 22333345777787777


Q ss_pred             EEEEeccccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHHH-hHHHHHHHHHHHHHHHHh
Q 031431           82 YSVIEGNDLADYKLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAK-AGKERVLGVVKGVEAYLQ  152 (159)
Q Consensus        82 y~v~eg~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~~-~~~~~~~~~~k~le~~l~  152 (159)
                      +....++.+     ...+.+++|.|.+ +||.++|+.+|+..+..+.+...+. ........+++.|.+.+-
T Consensus        80 ~~~~~~~~~-----~~~~~~w~~~~~~-~gT~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~~E  145 (155)
T d2rera1          80 AHRVETGPF-----AYMNLHWTYRAVA-GGTEMRWVQEFDMKPGAPFDNAHMTAHLNTTTRANMERIKKIIE  145 (155)
T ss_dssp             EEESSCTTE-----EEEEEEEEEEEET-TEEEEEEEEEEEECTTCSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEeecCccc-----eeeEEEEEEeecC-CccEEEEEEEEEECCCccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            776544432     2234456678875 4799999999998876555444433 333444556666655543

>d2ns9a1 d.129.3.10 (A:10-156) Hypothetical protein APE2225 {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: CoxG-like
domain: Hypothetical protein APE2225
species: Aeropyrum pernix [TaxId: 56636]

Probab=99.45  E-value=6.7e-12  Score=86.78  Aligned_cols=139  Identities=18%  Similarity=0.184  Sum_probs=81.3

Q ss_pred             EEEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEecCCceeEEEEEEEEEecccceEEE
Q 031431            4 VTYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQVKYAKHKIEEEDKVNLKLKY   82 (159)
Q Consensus         4 ~~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~y   82 (159)
                      ++++.+++|+|||++||+++ |+.+ +|.|+|+ +++++...+.  .+.......................++.... ..
T Consensus         3 ~k~e~si~I~ap~e~Vw~~l~D~~~-~~~w~p~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~   77 (147)
T d2ns9a1           3 VRYEGSFEVSKTPEEVFEFLTDPKR-FSRAFPG-FKSVEVEDGS--FTIELRLSLGPLRGDARVRASFEDLEKPSKA-TV   77 (147)
T ss_dssp             EEEEEEEEESSCHHHHHHHHTCHHH-HGGGSTT-EEEEEEETTE--EEEEEEEESSSSEEEEEEEEEEEEEETTTEE-EE
T ss_pred             EEEEEEEEEcCCHHHHHHHHhCHhh-hhhcccc-hhheeecccc--cceeEEEEEEEEeeEeeeeeeeeeecCCcce-eE
Confidence            68999999999999999999 9998 8999997 8887753332  1222222222111112233444444554443 33


Q ss_pred             EEEeccccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCC-CCCCHHHHH-hHHHHHHHHHHHHHHHH
Q 031431           83 SVIEGNDLADYKLEKISFEHQWRASPNGGSICKTICKLHAKGE-VEVTEEQAK-AGKERVLGVVKGVEAYL  151 (159)
Q Consensus        83 ~v~eg~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~-~~~~~~~~~-~~~~~~~~~~k~le~~l  151 (159)
                      ........   .......++++.|.+ +||.++|+.+++..+- .......++ ...+....+++.|.+.|
T Consensus        78 ~~~~~~~~---~~~~~~~~~~l~~~~-~gt~v~~~~~~~~~g~~~~l~~~~v~~~~~~~~~~~l~~lk~~~  144 (147)
T d2ns9a1          78 KGSGRGAG---STLDFTLRFAVEPSG-GGSRVSWVFEGNVGGLAASMGGRVLDSLARRMINDVISGVKREL  144 (147)
T ss_dssp             EEEEECSS---EEEEEEEEEEEEEET-TEEEEEEEEEEEEEEGGGGSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEeeeccc---cceeeEEEEEEEecC-CCcEEEEEEEEEeCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33222221   223344556677764 4799999999988653 233444444 23334455555555444

>d2pcsa1 d.129.3.10 (A:1-147) Hypothetical protein GKP20 {Geobacillus kaustophilus [TaxId: 1462]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: CoxG-like
domain: Hypothetical protein GKP20
species: Geobacillus kaustophilus [TaxId: 1462]

Probab=99.30  E-value=9.8e-11  Score=81.74  Aligned_cols=141  Identities=9%  Similarity=-0.012  Sum_probs=83.1

Q ss_pred             EEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEecCCceeEEEEEEEEEecccceEEEE
Q 031431            5 TYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQVKYAKHKIEEEDKVNLKLKYS   83 (159)
Q Consensus         5 ~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~y~   83 (159)
                      .++.+++|++|+|+||+++ |..+ +|+++|+ +++++.++.+...+.++ +.++.-...-..+.++...+...+. ...
T Consensus         2 n~s~~~~i~~~~e~v~~~l~D~~~-~~~~~Pg-~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~-~~~   77 (147)
T d2pcsa1           2 NGNGSIELKGTVEEVWSKLMDPSI-LSKCIMG-CKSLELIGEDKYKADLQ-IGIAAVKGKYDAIIEVTDIKPPYHY-KLL   77 (147)
T ss_dssp             EEEEEEEEESCHHHHHHHHTCHHH-HHHHSTT-EEEEEEEETTEEEEEEE-ECCGGGCEEEEEEEEEEEEETTTEE-EEE
T ss_pred             CCCceEEeCCCHHHHHHHHcCHHH-HHhhCcc-hhhceecCCCEEEEEEE-EeecceeeeeEEEEEEeccCcccce-eEe
Confidence            5788999999999999999 9998 8999998 78888775542222222 2222211112344555666666553 222


Q ss_pred             EEeccccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCC-CCCCHHHHH-hHHHHHHHHHHHHHHHHh
Q 031431           84 VIEGNDLADYKLEKISFEHQWRASPNGGSICKTICKLHAKGE-VEVTEEQAK-AGKERVLGVVKGVEAYLQ  152 (159)
Q Consensus        84 v~eg~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~-~~~~~~~~~-~~~~~~~~~~k~le~~l~  152 (159)
                      .......   ..........+.+.++++|.++|+++|+..+. .......++ .+.+++..+.+.+++.|.
T Consensus        78 ~~~~~~~---~~~~~~~~~~~~~~~~~~T~v~~~~~~~~~g~l~~l~~~li~~~~~~~~~~f~~~~~~~l~  145 (147)
T d2pcsa1          78 VNGEGGP---GFVNAEGVIDLTPINDECTQLTYTYSAEVGGKVAAIGQRMLGGVAKLLISDFFKKIQKEIA  145 (147)
T ss_dssp             EEEEETT---EEEEEEEEEEEEESSSSEEEEEEEEEEEEESGGGGGCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ecccccc---chhcceeEEeeecccCCcEEEEEEEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            2211111   12222333445666677899999999998553 223444444 333444555565655553

>d1xuva_ d.129.3.5 (A:) Hypothetical protein MM0500 {Methanosarcina mazei [TaxId: 2209]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein MM0500
species: Methanosarcina mazei [TaxId: 2209]

Probab=99.06  E-value=2.2e-09  Score=76.67  Aligned_cols=142  Identities=9%  Similarity=0.013  Sum_probs=88.0

Q ss_pred             EEEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEe-cCCceeEEEEEEEEEecccceEE
Q 031431            4 VTYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIV-EGGQVKYAKHKIEEEDKVNLKLK   81 (159)
Q Consensus         4 ~~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~-~g~~~~~~kErl~~~D~~~~~~~   81 (159)
                      ..+..+.+|+||+++||+++ |... +++|++..--++...+.+..+|....+.+. .++....+.-++..+++.++ +.
T Consensus        12 ~~i~i~r~i~Ap~e~Vw~a~tdpe~-l~~W~~p~~~~~~~~~~d~~~gg~~~~~~~~~~g~~~~~~g~v~~i~~~~r-l~   89 (163)
T d1xuva_          12 QEIIITREFDAPRELVFKAFTDPDL-YTQWIGPRGFTTALKIFEPKNGGSWQYIQKDPEGNEYAFHGVNHDVTEPER-II   89 (163)
T ss_dssp             SEEEEEEEESSCHHHHHHHHHCHHH-HTTTCSSTTCEEEEEEECCSTTCEEEEEEECTTSCEEEEEEEEEEEETTTE-EE
T ss_pred             ceEEEEEEeCCCHHHHHHHHcChHH-hhhccCCCCccceeeeeeceeCceEEEEEEecCCCceEEEEEEEEecCCCE-EE
Confidence            46888999999999999999 9886 788764322234445566555555444443 23333457778899999877 66


Q ss_pred             EEEE-eccccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHHH-hHHHHHHHHHHHHHHHHhh
Q 031431           82 YSVI-EGNDLADYKLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAK-AGKERVLGVVKGVEAYLQA  153 (159)
Q Consensus        82 y~v~-eg~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~~-~~~~~~~~~~k~le~~l~~  153 (159)
                      |+.- ++.....   .....+++|++.++|+|.+.++..|....   ..+..+. ...++-..++..|++||.+
T Consensus        90 ~tw~~~~~~~~~---~~~~v~~~~e~~~~g~t~~~~~~~~~~~~---~~~~~~~~g~~~GW~~~L~~L~~~le~  157 (163)
T d1xuva_          90 STFEFEGLPEKG---HVILDTARFEALPGDRTKLTSHSVFQTIE---DRDGMLQSGMEEGINDSYERLDELLEK  157 (163)
T ss_dssp             EEEEETTSSSSC---CCEEEEEEEEEETTTEEEEEEEEECSSHH---HHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred             EEEeccCCCCCC---CcEEEEEEEEEeCCCcEEEEEEEcCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            6643 3322222   22345667788877778888876653221   1111111 2234456788888888865

>d2qpva1 d.129.3.8 (A:1-133) Uncharacterized protein Atu1531 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Atu1531-like
domain: Uncharacterized protein Atu1531
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.99  E-value=3.6e-09  Score=73.91  Aligned_cols=101  Identities=8%  Similarity=-0.058  Sum_probs=67.3

Q ss_pred             EEEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEecCCceeEEEEEEEEEecccceEEE
Q 031431            4 VTYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQVKYAKHKIEEEDKVNLKLKY   82 (159)
Q Consensus         4 ~~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~y   82 (159)
                      .+...+++|++|+++||+.+ |+.+ +|+|+|+ +.+++..+|    +  +.+....+.  ...+-++.. +++.+.+.|
T Consensus         5 ~~~~~~i~I~~p~~~v~~~~~d~~~-~p~w~~~-l~~~~~~~~----~--~~~~~~~~~--G~~~~~i~~-~~p~~~i~w   73 (133)
T d2qpva1           5 QSRIIHLSVEKPWAEVYDFAANPGN-MPRWAAG-LAGGLEADG----E--DWIAKGGPL--GEVRVNFAP-HNEFGVIDH   73 (133)
T ss_dssp             CEEEEEEEESSCHHHHHHHHHCGGG-GGGTCGG-GTTCCEEET----T--EEEEECSSS--CEEEEEECC-CCSSCBCCE
T ss_pred             eEEEEEEEECCCHHHHHHHHhChhh-cchhhhc-cceeEEecC----C--cEEEEecCC--CcEEEEEEE-cCCCCEEEE
Confidence            36778899999999999999 9998 8999997 777765554    2  334443222  234445554 677888999


Q ss_pred             EEEeccccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEc
Q 031431           83 SVIEGNDLADYKLEKISFEHQWRASPNGGSICKTICKLHAK  123 (159)
Q Consensus        83 ~v~eg~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~  123 (159)
                      +...|+..    .  ...++.+.|.++ +|.+.|+. |.+.
T Consensus        74 ~~~~~~~~----~--g~v~fr~~~~g~-gt~v~~~~-~~pp  106 (133)
T d2qpva1          74 VVTLPDGL----K--VYNALRVTPNGS-GTEVSFTL-LRLE  106 (133)
T ss_dssp             EEECTTSC----E--EEEEEEEEEETT-EEEEEEEE-ECCT
T ss_pred             EEecCCCC----E--EEEEEEEccCCC-eEEEEEEE-EeCC
Confidence            98877541    1  223444555533 57777765 4443

>d2il5a1 d.129.3.5 (A:5-168) Hypothetical protein SA2116 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein SA2116
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.91  E-value=1.1e-07  Score=67.53  Aligned_cols=145  Identities=14%  Similarity=0.118  Sum_probs=87.9

Q ss_pred             EEEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEe-cCCceeEEEEEEEEEecccceEE
Q 031431            4 VTYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIV-EGGQVKYAKHKIEEEDKVNLKLK   81 (159)
Q Consensus         4 ~~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~-~g~~~~~~kErl~~~D~~~~~~~   81 (159)
                      ..+..+..|+||+++||+++ |... +++|.+..--.+...+.+-.+|..-.+.+. .++....+.-++.++++.++ +.
T Consensus         7 ~~i~ier~i~Ap~e~Vw~a~tdpe~-l~~W~~p~~~~~~~~~~d~~~Gg~~~~~~~~~~g~~~~~~g~v~e~~p~~~-i~   84 (164)
T d2il5a1           7 VEVEIEKLYKFSPELVYEAWTKKDL-LKQWFMTSARTNKEIEADVKEGGKYRIVDQQRNGKVNVIEGIYESLVMDEY-VK   84 (164)
T ss_dssp             EEEEEEEEESSCHHHHHHHTTCHHH-HTTTSSSCTTTEEEEEECCSTTCEEEEEEECGGGCEEEEEEEEEEEETTTE-EE
T ss_pred             EEEEEEEEECCCHHHHHHHHcCHHH-HhCcccCCCccceEEEeecccCceEEEEEecCCcceEEEEEEEEEEcCCCE-EE
Confidence            56888999999999999999 8886 677654211123334556555655445543 23333456667888988877 56


Q ss_pred             EEEE-eccccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHH--------HHHhHHHHHHHHHHHHHHHHh
Q 031431           82 YSVI-EGNDLADYKLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEE--------QAKAGKERVLGVVKGVEAYLQ  152 (159)
Q Consensus        82 y~v~-eg~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~--------~~~~~~~~~~~~~k~le~~l~  152 (159)
                      |+.- ++..  . ..  ...++.+.+..+|+|.++++.+..+.........        .+.....+-..++..|.+||-
T Consensus        85 ~t~~~~~~~--~-~~--~~~~~~~~e~~~ggT~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gw~~~l~~L~~~lE  159 (164)
T d2il5a1          85 MTIGMPGLS--E-TQ--DVIEVEFFERETGGTQMLFYYRSLVEKERRFTNLEYKQKKKEYHDAMVHGFELMFDKMYHVIE  159 (164)
T ss_dssp             EEESCC--C--C-CC--EEEEEEEEECSSSSEEEEEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEeccCCC--C-Cc--eEEEEEEEEcCCCCEEEEEEEeecChhHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            6641 2222  1 11  1234455666678999999998877544222111        122233455778888888886


Q ss_pred             hCC
Q 031431          153 ANP  155 (159)
Q Consensus       153 ~~~  155 (159)
                      +-+
T Consensus       160 ~g~  162 (164)
T d2il5a1         160 TST  162 (164)
T ss_dssp             TTS
T ss_pred             ccC
Confidence            543

>d1t17a_ d.129.3.6 (A:) Hypothetical protein CC1736 {Caulobacter crescentus [TaxId: 155892]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: oligoketide cyclase/dehydrase-like
domain: Hypothetical protein CC1736
species: Caulobacter crescentus [TaxId: 155892]

Probab=98.84  E-value=3.8e-08  Score=69.13  Aligned_cols=134  Identities=11%  Similarity=0.068  Sum_probs=81.6

Q ss_pred             EEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCC-CCCCcEEEEEE--ecCCceeEEEEEEEEEecccceE
Q 031431            5 TYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGN-GGPGSIKKFTI--VEGGQVKYAKHKIEEEDKVNLKL   80 (159)
Q Consensus         5 ~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~-g~~GsvR~~~~--~~g~~~~~~kErl~~~D~~~~~~   80 (159)
                      ....+..|++||+++|+++ |+.+ .|+|+|. ++++++++.. .+.|......+  .-++.......+ ...+..++.+
T Consensus         3 ~~~~~~vi~~~~e~vf~vV~Dve~-Yp~FlP~-c~~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~   79 (148)
T d1t17a_           3 RHVVTKVLPYTPDQLFELVGDVDA-YPKFVPW-ITGMRTWNGRVDGAVSTVDAEAQVGFSFLREKFATR-VRRDKDARSI   79 (148)
T ss_dssp             EEEEEEEESSCTHHHHHHHTTTTC-CSSCCSS-CCCCCEEEEEEETTEEEEEEEEECSTTSSCCEEEEE-EEEETTTCEE
T ss_pred             cceEEEEeCCCHHHHHHHHHHHHh-hhhhccc-cCccEEEecccccccceeeEEEEEEeeeeEEEEEEE-eeecCCceEE
Confidence            3567789999999999999 9998 8999996 7777766543 12233333333  323322333333 3356777766


Q ss_pred             EEEEEeccccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHHH-hHHHHHHHHHHHHHHH
Q 031431           81 KYSVIEGNDLADYKLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAK-AGKERVLGVVKGVEAY  150 (159)
Q Consensus        81 ~y~v~eg~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~~-~~~~~~~~~~k~le~~  150 (159)
                      .....+|.. .   ...  .++++.|.++ +|.|+|..+|+-...  .....++ ...+.+..|++++++-
T Consensus        80 ~~~~~~g~f-~---~l~--~~W~f~~~~~-~T~V~~~l~fe~~~~--l~~~~~~~~~~~~~~~~i~aF~~R  141 (148)
T d1t17a_          80 DVSLLYGPF-K---RLN--NGWRFMPEGD-ATRVEFVIEFAFKSA--LLDAMLAANVDRAAGKLIACFEAR  141 (148)
T ss_dssp             EEEESSTTS-S---CEE--EEEEEEEETT-EEEEEEEEEECCSCH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEeccCchh-h---hcc--cceeeccCCC-ceEEEEEEEEEECCH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666654543 2   222  3556688765 699999999986532  2222232 2334445666666543

>d1z94a1 d.129.3.5 (A:2-144) Hypothetical protein CV1439 {Chromobacterium violaceum [TaxId: 536]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein CV1439
species: Chromobacterium violaceum [TaxId: 536]

Probab=98.73  E-value=5e-07  Score=62.52  Aligned_cols=137  Identities=15%  Similarity=0.113  Sum_probs=81.8

Q ss_pred             EEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEe--cCCceeEEEEEEEEEecccceEE
Q 031431            5 TYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIV--EGGQVKYAKHKIEEEDKVNLKLK   81 (159)
Q Consensus         5 ~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~--~g~~~~~~kErl~~~D~~~~~~~   81 (159)
                      ++..+..|+||+++||+++ |... +.+|++..--.+...+++-.+|..-.+.+.  +++..-.+.=++..+++.++ +.
T Consensus         3 ti~~~r~i~ap~e~Vw~a~Tdp~~-~~~W~~p~~~~~~~~~~d~~~Gg~~~~~~~~~~~g~~~~~~g~v~~~~p~~~-i~   80 (143)
T d1z94a1           3 TIRLHRVLSAPPERVYRAFLDPLA-LAKWLPPEGFVCKVLEHDARVGGAYKMEFLAFASGQKHAFGGRYLELVPGER-IR   80 (143)
T ss_dssp             CEEEEEEESSCHHHHHHHTTCHHH-HHHHSSCTTEEEEEEEECCSTTCEEEEEEEETTTCCEEEEEEEEEEEETTTE-EE
T ss_pred             EEEEEEEECCCHHHHHHHhcCHHH-HhhhhCCCCccceeEeeccccceeEEEEEeeCCCCcEEEEEEEEEEecCCeE-EE
Confidence            6788999999999999999 8776 777764322233445566555655444443  34443445567888988888 56


Q ss_pred             EEEEeccccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHHHhHHHHHHHHHHHHHHHHhh
Q 031431           82 YSVIEGNDLADYKLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQA  153 (159)
Q Consensus        82 y~v~eg~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~~~~~~~~~~~~k~le~~l~~  153 (159)
                      |+..-.+.  . .....+.+++|.+.++ +|.++.+-  +..++. .....   ...+-..++..|++||-+
T Consensus        81 ~t~~~~~~--~-~~~~~~v~~~l~~~~~-gT~lt~~~--~~~~~~-~~~~~---~~~GW~~~l~~L~~~lE~  142 (143)
T d1z94a1          81 YTDRFDDA--G-LPGDMITTITLAPLSC-GADLSIVQ--EGIPDA-IPPEN---CYLGWQQSLKQLAALVEP  142 (143)
T ss_dssp             EEEEESCC--C----CEEEEEEEEEETT-EEEEEEEE--ECCCTT-SCHHH---HHHHHHHHHHHHHHHHSC
T ss_pred             EEEeccCC--C-CCCcEEEEEEEEEcCC-CEEEEEEE--EcCCCh-hHHHH---HHHHHHHHHHHHHHHHcC
Confidence            77543332  1 1112345667788755 57766543  333222 22222   234556778888888754

>d1xfsa_ d.129.3.5 (A:) Hypothetical protein NE0264 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein NE0264
species: Nitrosomonas europaea [TaxId: 915]

Probab=98.58  E-value=4.9e-07  Score=64.20  Aligned_cols=145  Identities=12%  Similarity=0.098  Sum_probs=82.8

Q ss_pred             EEEEEEEEEcCCHHHHHhhh-cCCCCccccc-CCceeEEEEEcCCCCCCcEEEEEEe-cCCceeEEEEEEEEEecccceE
Q 031431            4 VTYESEETYAVPPARMFNAL-ASDNLPSKIF-PDVVKNVEVLEGNGGPGSIKKFTIV-EGGQVKYAKHKIEEEDKVNLKL   80 (159)
Q Consensus         4 ~~~~~e~~i~apa~~vW~~~-d~~~~lp~~~-P~~v~s~~~~eG~g~~GsvR~~~~~-~g~~~~~~kErl~~~D~~~~~~   80 (159)
                      ..+..+.+|+||+++||+++ |... +.+|+ |.-. .+...+++-.+|..-.+.+. +++......=++.++++.++ +
T Consensus         5 ~~l~i~r~i~ap~e~Vw~a~tdpe~-~~~W~~p~~~-~~~~~~~d~~~GG~~~~~~~~~~g~~~~~~g~v~ei~p~~r-l   81 (165)
T d1xfsa_           5 LDLMLKRELAVPVNLVWRGLTEPEL-LKKWFVPKPW-SISDCRVDLRPGGEFYTVMQDPEGNKFPNSGCFLEVTDEKR-L   81 (165)
T ss_dssp             TEEEEEEEESSCHHHHHHHHHCHHH-HTTTSSCTTC-EEEEEEECCSTTCEEEEEEECTTCCEEEEEEEEEEEETTTE-E
T ss_pred             cEEEEEEEEcCCHHHHHHHHcCHHH-HhhcCCCCCc-cceeecccceeCceEEEEEECCCCceeeEEEEEEEecCCcE-E
Confidence            46889999999999999999 8776 67764 5433 23334566444554444443 33333455667888988877 4


Q ss_pred             EEE--EEeccc--cCC----C--ceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHHH-hHHHHHHHHHHHHHH
Q 031431           81 KYS--VIEGND--LAD----Y--KLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAK-AGKERVLGVVKGVEA  149 (159)
Q Consensus        81 ~y~--v~eg~~--l~~----Y--~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~~-~~~~~~~~~~k~le~  149 (159)
                      .|+  +..+..  ...    .  .....+.+++|.+.+ ++|.++++..+....+   .+...+ ...++-..++..|++
T Consensus        82 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~-~gT~lt~~~~~~~~~~---~~~~~~~g~~~GW~~~l~~L~~  157 (165)
T d1xfsa_          82 IWTSALVKNYRPAVPATTSDKECAHIVMTAVIELQPTS-SGTRYTACAMHNTPGQ---RKLHEEMGFHEGWGTTITQLEE  157 (165)
T ss_dssp             EEESSEEGGGEECCC-----------CCEEEEEEEECS-SSEEEEEEEECSSHHH---HHHHHTTTHHHHHHHHHHHHHH
T ss_pred             EEEEeecccccccccccccccCCCCccEEEEEEEEEcC-CcEEEEEEEEcCCHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence            664  221100  000    0  011123456667764 4689988754322111   011111 123455688999999


Q ss_pred             HHhhCC
Q 031431          150 YLQANP  155 (159)
Q Consensus       150 ~l~~~~  155 (159)
                      ||.+++
T Consensus       158 ~le~~~  163 (165)
T d1xfsa_         158 LLKQEK  163 (165)
T ss_dssp             HHHHHS
T ss_pred             HHHhcC
Confidence            998866

>d3elia1 d.129.3.5 (A:2-144) Uncharacterized protein SPO3351 {Silicibacter pomeroyi [TaxId: 89184]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Uncharacterized protein SPO3351
species: Silicibacter pomeroyi [TaxId: 89184]

Probab=98.55  E-value=2.2e-06  Score=59.08  Aligned_cols=135  Identities=11%  Similarity=0.030  Sum_probs=77.3

Q ss_pred             EEEEEEEEcCCHHHHHhhh-cCCCCcccccC-CceeEEEEEc--CCCCCCcEEEEEEe-cCCceeEEEEEEEEEecccce
Q 031431            5 TYESEETYAVPPARMFNAL-ASDNLPSKIFP-DVVKNVEVLE--GNGGPGSIKKFTIV-EGGQVKYAKHKIEEEDKVNLK   79 (159)
Q Consensus         5 ~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P-~~v~s~~~~e--G~g~~GsvR~~~~~-~g~~~~~~kErl~~~D~~~~~   79 (159)
                      .+..+.+|+||+++||+++ |... +.+|++ +.. .+...+  .+-.+|.-..+.+. ..+....+.-++..+++.++ 
T Consensus         2 el~i~r~i~a~~e~Vw~a~tdp~~-l~~W~~~~~~-~~~~~~~~~~~~~gg~~~~~~~~~~g~~~~~~g~v~~~~p~~r-   78 (143)
T d3elia1           2 DLRLEREFAVAPEALFAWVSDGAK-LLQWWGPEGL-HVPADQHDLDFTRLGPWFSVMVNGEGQRYKVSGQVTHVKPPQS-   78 (143)
T ss_dssp             EEEEEEEESSCHHHHHHHTTCHHH-HHHHCSSTTC-BCCTTSBCCCCSSSEEEEEEEECTTCCEEEEEEEEEEEETTTE-
T ss_pred             eEEEEEEECCCHHHHHHHhcCHHH-HhhhcCCCCc-eeeeeeEEEeeccCccEEEEEECCCCcEEEEEEEEEEcCCCCE-
Confidence            5788899999999999999 8886 677763 222 111111  22223333333333 22333445668888998877 


Q ss_pred             EEEE--EEeccccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHHHhHHHHHHHHHHHHHHHHh
Q 031431           80 LKYS--VIEGNDLADYKLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQ  152 (159)
Q Consensus        80 ~~y~--v~eg~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~~~~~~~~~~~~k~le~~l~  152 (159)
                      +.|+  ....+..   .....+++++|.|.+ ++|.++++-  ...    ++.+......++-..++..|++||.
T Consensus        79 l~~t~~~~~~~~~---~~~~~~vt~~l~~~~-~gT~l~~~~--~~~----~~~~~~~~~~~GW~~~L~~L~~~lA  143 (143)
T d3elia1          79 VGFTWGWHDDDDR---RGAESHVMFIVEPCA-KGARLILDH--REL----GDDEMSLRHEEGWTSSLRKLAAELA  143 (143)
T ss_dssp             EEEEEEEECTTSC---EEEEEEEEEECCBC---CEEEEEEE--ESC----SCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEeecCCCCC---CCCcEEEEEEEEEcC-CCEEEEEEE--EcC----CCHHHHHHHHHHHHHHHHHHHHHhC
Confidence            4554  4433221   223344566777764 468876653  222    2334444455666888888888873

>d2nn5a1 d.129.3.5 (A:1-160) Hypothetical protein EF2215 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein EF2215
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.21  E-value=1.1e-05  Score=57.53  Aligned_cols=123  Identities=11%  Similarity=0.111  Sum_probs=72.7

Q ss_pred             EEEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEecCCceeEEEEEEEEEecccceEEE
Q 031431            4 VTYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQVKYAKHKIEEEDKVNLKLKY   82 (159)
Q Consensus         4 ~~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~y   82 (159)
                      ..+..++.|+||+++||+++ |... +++|+|. ....+...|    |.+ .+.+..+    ...-++.++++.++ +.|
T Consensus        12 ~~f~~er~i~ap~e~Vw~AlTdpe~-l~~W~~~-~~~~d~~~G----G~~-~~~~~~~----~~~~~v~~~epp~r-L~~   79 (160)
T d2nn5a1          12 IYFGTERAISASPQTIWRYLTETDK-LKQWFPE-LEIGELGVN----GFW-RFILPDF----EETMPFTDYAEEKY-LGV   79 (160)
T ss_dssp             EEEEEEEEESSCHHHHHHHHHCHHH-HHHHCTT-EEEEECSTT----CEE-EEEETTE----EEEEEEEEEETTTE-EEE
T ss_pred             EEEEEEEEecCCHHHHHHHHcCHHH-HHhhCCC-CCcccccCC----Cee-EEEcCCC----CcceEEEEEecCCE-EEE
Confidence            56888999999999999999 8886 8999985 332222112    444 3455433    23446788887666 677


Q ss_pred             EEEeccccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHHHhHHHHHHHHHHHHHHHHhhC
Q 031431           83 SVIEGNDLADYKLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQAN  154 (159)
Q Consensus        83 ~v~eg~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~~~~~~~~~~~~k~le~~l~~~  154 (159)
                      +-  +.         ...++.|.|.++++|.+.-+=... ...... -.....   +=..++..|.+||-..
T Consensus        80 tW--~~---------~~v~~eL~~~~~~~t~l~l~~~~~-~~~~~~-~~~~~~---GW~~~Ld~L~~~leg~  135 (160)
T d2nn5a1          80 TW--DT---------GIIYFDLKEQAPHQTLLVFSESLP-ENFTTP-RHKDIA---GWSIVLNRLKQVVETP  135 (160)
T ss_dssp             EE--TT---------EEEEEEEEEEETTEEEEEEEEEEC-TTCSSC-HHHHHH---HHHHHHHHHHHHHHCT
T ss_pred             Ee--cC---------ceEEEEEecCCCCeEEEEEEEecC-ccccch-hhhhHH---HHHHHHHHHHHHHcCC
Confidence            74  21         124556678766677776554322 111111 111111   2255677777777543

>d1xn5a_ d.129.3.5 (A:) Hypothetical protein BH1534 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein BH1534
species: Bacillus halodurans [TaxId: 86665]

Probab=98.16  E-value=1.1e-05  Score=55.26  Aligned_cols=93  Identities=12%  Similarity=0.182  Sum_probs=59.5

Q ss_pred             EEEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEecCCceeEEEEEEEEEecccceEEE
Q 031431            4 VTYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQVKYAKHKIEEEDKVNLKLKY   82 (159)
Q Consensus         4 ~~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~y   82 (159)
                      -.+..++.|+||+++||+++ |... +.+|++..       +.+.++|..-.+....+    .+.=++.++++.++ +.|
T Consensus         5 p~i~~~~~i~ap~e~Vw~alt~p~~-~~~W~~~~-------~~~~~~g~~~~~~~~~~----~~~g~v~~~~~~~~-l~~   71 (138)
T d1xn5a_           5 PDIKKEVRFNAPIEKVWEAVSTSEG-LAFWFMEN-------DLKAETGHHFHLQSPFG----PSPCQVTDVERPIK-LSF   71 (138)
T ss_dssp             CCEEEEEEESSCHHHHHHHTTSHHH-HHTTSCCB-------CCCSCTTCEEEEECSSC----EEEEEEEEEETTTE-EEE
T ss_pred             CeEEEEEEECCCHHHHHHHHcCHHH-hceEccCC-------cccccceeeEEecCCcc----ceeEEEEEEeCCcE-EEE
Confidence            35889999999999999999 8776 78898752       12223344333332222    34447778888776 678


Q ss_pred             EEEeccccCCCceeEEEEEEEEEECCCCCeEEEEEEE
Q 031431           83 SVIEGNDLADYKLEKISFEHQWRASPNGGSICKTICK  119 (159)
Q Consensus        83 ~v~eg~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~  119 (159)
                      +.-.+    +     ...+++|.|.+ ++|.++++-+
T Consensus        72 ~~~~~----~-----~~v~~~l~~~~-~gT~lt~~~~   98 (138)
T d1xn5a_          72 TWDTD----G-----WSVTFHLKEEE-NGTIFTIVHS   98 (138)
T ss_dssp             EETTT----T-----EEEEEEEEECS-SSEEEEEEEE
T ss_pred             EecCC----C-----eEEEEEEEEcC-CcEEEEEEEe
Confidence            75211    1     13456678864 5788887654

>d1zxfa1 d.129.3.5 (A:1-155) Calicheamicin gene cluster protein CalC {Micromonospora echinospora [TaxId: 1877]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Calicheamicin gene cluster protein CalC
species: Micromonospora echinospora [TaxId: 1877]

Probab=98.12  E-value=5.8e-07  Score=63.16  Aligned_cols=135  Identities=11%  Similarity=0.051  Sum_probs=70.4

Q ss_pred             EEEEEEEcCCHHHHHhhh-cCCCCcccccCCc-----eeEEEEEcCCCCCCcEEEEEEecCCceeEEEEEEEEEecccce
Q 031431            6 YESEETYAVPPARMFNAL-ASDNLPSKIFPDV-----VKNVEVLEGNGGPGSIKKFTIVEGGQVKYAKHKIEEEDKVNLK   79 (159)
Q Consensus         6 ~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~-----v~s~~~~eG~g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~   79 (159)
                      +..+++|+||+++||+++ |  . +++|.|..     +.+.....+.|  |..+ +...+|.  ..+.=++.++++.++ 
T Consensus         6 v~~~~~i~Ap~e~Vf~a~te--~-~~~Ww~~~~~~~~~~~~~~~~~~g--G~~~-~~~~dG~--~~~~g~v~ei~p~~r-   76 (155)
T d1zxfa1           6 VRHSVTVKADRKTAFKTFLE--G-FPEWWPNNFRTTKVGAPLGVDKKG--GRWY-EIDEQGE--EHTFGLIRKVDEPDT-   76 (155)
T ss_dssp             EEEEEEESSHHHHHHHHHTT--C-SSSSSSGGGSTTTTCSSCEEETTT--TEEE-CCCTTTS--CCCCEEEEEEETTTE-
T ss_pred             EEEEEEEeCCHHHHHHHHHh--h-hHhhcCCCCCCceEEEEEEeeCCC--ceEE-EEccccc--eeeeEEEEEEecCcE-
Confidence            678999999999999999 7  2 45665432     22222222222  4332 2223332  123336788888887 


Q ss_pred             EEEEEEecc-ccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHHH----hHHHHHHHHHHHHHHHHhhC
Q 031431           80 LKYSVIEGN-DLADYKLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAK----AGKERVLGVVKGVEAYLQAN  154 (159)
Q Consensus        80 ~~y~v~eg~-~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~~----~~~~~~~~~~k~le~~l~~~  154 (159)
                      +.|+---++ .... ......+++.|++.++++|.++.+  ......  ..++...    ...+.=..++..|.+||-++
T Consensus        77 l~~tw~~~~~~~~~-~~~~s~v~~~~~~~~~~~T~ltl~--h~g~~~--~~~~~~~~~~~~~~~GW~~~L~~L~~~le~~  151 (155)
T d1zxfa1          77 LVIGWRLNGFGRID-PDNSSEFTVTFVADGQKKTRVDVE--HTHFDR--MGTKHAKRVRNGMDKGWPTILQSFQDKIDEE  151 (155)
T ss_dssp             EEEECCCSSSSSCC-CSSCCCEEEEEEEETTTEEEEEEE--ECSSTT--SCHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred             EEEEEecCCccccc-cccceEEEEEEEecCCCCEEEEEE--EeccCc--ccchhHHHHHhhhhhhHHHHHHHHHHHhhhh
Confidence            567633222 1111 111123566678877777877655  222221  1122111    11123356777888877653

>d1xn6a_ d.129.3.5 (A:) Hypothetical protein BC4709 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein BC4709
species: Bacillus cereus [TaxId: 1396]

Probab=97.97  E-value=7.2e-06  Score=56.97  Aligned_cols=90  Identities=12%  Similarity=0.110  Sum_probs=56.9

Q ss_pred             EEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEe-cCCceeEEEEEEEEEecccceEEE
Q 031431            5 TYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIV-EGGQVKYAKHKIEEEDKVNLKLKY   82 (159)
Q Consensus         5 ~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~-~g~~~~~~kErl~~~D~~~~~~~y   82 (159)
                      .+..++.|+||+++||+++ |... +.+|++..  .+     +-.+|..  +++. +++.   +.=++.++++..+ +.|
T Consensus         9 ~i~~~~~i~ap~e~Vw~alTdp~~-l~~W~~~~--~~-----~~~~G~~--~~~~~~~g~---~~g~v~~~~p~~~-l~~   74 (143)
T d1xn6a_           9 DIKQTIVFNASIQKVWSVVSTAEG-IASWFMPN--DF-----VLEVGHE--FHVQSPFGP---SPCKVLEIDEPNH-LSF   74 (143)
T ss_dssp             CEEEEEEESSCHHHHHHTTSCSHH-HHTTSCCB--CC-----CCCTTCE--ECBCCTTCC---CCEEEEEEETTTE-EEE
T ss_pred             eEEEEEEECCCHHHHHHHhcChHH-hceEeecc--Cc-----ccccCce--EEEeccccc---eeEEEEEEeCCcE-EEE
Confidence            4889999999999999999 8876 78888641  12     2123332  2332 2221   2336677877765 677


Q ss_pred             EEEeccccCCCceeEEEEEEEEEECCCCCeEEEEE
Q 031431           83 SVIEGNDLADYKLEKISFEHQWRASPNGGSICKTI  117 (159)
Q Consensus        83 ~v~eg~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~  117 (159)
                      +--.+       .  .+.+++|++.++|+|.++.+
T Consensus        75 tw~~~-------~--~~v~~~l~~~~~G~T~l~l~  100 (143)
T d1xn6a_          75 SWDTD-------G--WVVSFDLKDLGDNKTEFTLI  100 (143)
T ss_dssp             EETTT-------T--EEEEEEEEEEETTEEEEEEE
T ss_pred             EEcCC-------C--cEEEEEEEEcCCCcEEEEEE
Confidence            75211       1  13456678877777888765

>d2k5ga1 d.129.3.5 (A:1-183) Uncharacterized protein BPP1335 {Bordetella parapertussis [TaxId: 519]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Uncharacterized protein BPP1335
species: Bordetella parapertussis [TaxId: 519]

Probab=97.97  E-value=6.1e-05  Score=54.10  Aligned_cols=131  Identities=10%  Similarity=0.012  Sum_probs=75.5

Q ss_pred             EEEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEecC--------------CceeEEEE
Q 031431            4 VTYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEG--------------GQVKYAKH   68 (159)
Q Consensus         4 ~~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g--------------~~~~~~kE   68 (159)
                      .++..+..++||+++||+++ |... +.+|++..       +.+-.+|..-.+.+..+              +....+.=
T Consensus        19 ~~l~~er~~~Ap~e~VW~AlTdpe~-l~~W~~p~-------~~d~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g   90 (183)
T d2k5ga1          19 QSIRFERLLPGPIERVWAWLADADK-RARWLAGG-------ELPRQPGQTFELHFNHAALTAETAPARYAQYDRPIVARH   90 (183)
T ss_dssp             SSEEEEEEESSSSHHHHHHHHCHHH-HTTTSCCC-------CCCSSTTCEEEEEECGGGSCCSSCCSSCSGGGSCEEEEE
T ss_pred             ceEEEEEEeCCCHHHHHHHHhChHH-HhhhcCCC-------CccccCCCEEEEEecCCCCcccccccccccCCCceeEEE
Confidence            35788999999999999999 8886 77877531       12222333333333211              11134556


Q ss_pred             EEEEEecccceEEEEEEeccccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHHHhHHHHHHHHHHHHH
Q 031431           69 KIEEEDKVNLKLKYSVIEGNDLADYKLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAKAGKERVLGVVKGVE  148 (159)
Q Consensus        69 rl~~~D~~~~~~~y~v~eg~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~~~~~~~~~~~~k~le  148 (159)
                      ++.++++.++ +.|+...++.- .  .  ..++++|.+.+ ++|.++.+-  ...    ++.+.......+=..++..|.
T Consensus        91 ~v~~~~p~~r-l~~tw~~~~~~-~--~--s~v~~~l~~~g-~gT~ltl~~--~~~----~~~~~~~~~~~GW~~~L~~L~  157 (183)
T d2k5ga1          91 TLLRCEPPRV-LALTWGGGAGE-A--P--SEVLFELSEAG-EQVRLVLTH--TRL----ADRAAMLDVAGGWHAHLAVLA  157 (183)
T ss_dssp             EEEEEETTTE-EEEECCCCSSS-S--C--CEEEEEEEECS-SSEEEEEEE--ECC----CSHHHHHHHTTTTTTHHHHHH
T ss_pred             EEEEEeCCeE-EEEEeccCCCC-C--c--EEEEEEEEEcC-CcEEEEEEE--ecC----CChhhHHHHhhhHHHHHHHHH
Confidence            7888998766 67876544332 1  1  23456678875 467775442  211    222222222223367788888


Q ss_pred             HHHhhCC
Q 031431          149 AYLQANP  155 (159)
Q Consensus       149 ~~l~~~~  155 (159)
                      +||...+
T Consensus       158 ~~leg~~  164 (183)
T d2k5ga1         158 GKLAGQA  164 (183)
T ss_dssp             HHHHTSC
T ss_pred             HHHCCCC
Confidence            8887543

>d1x53a1 d.129.3.5 (A:8-139) Activator of 90 kda heat shock protein ATPase homolog 1, AHSA1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Activator of 90 kda heat shock protein ATPase homolog 1, AHSA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.66  E-value=6.7e-05  Score=51.37  Aligned_cols=102  Identities=9%  Similarity=0.057  Sum_probs=59.4

Q ss_pred             cEEEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEecCCceeEEEEEEEEEecccceEE
Q 031431            3 VVTYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQVKYAKHKIEEEDKVNLKLK   81 (159)
Q Consensus         3 ~~~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~   81 (159)
                      -.++..+.+++||+++||+++ |... +.+|+....      +.+-.+|..  +.+..|.    +.=++.++++.++ +.
T Consensus         3 T~~i~~~r~~~ap~e~Vw~a~tdpe~-l~~W~~~~~------~~d~~~Gg~--f~~~~g~----~~G~~~ev~p~~r-lv   68 (132)
T d1x53a1           3 TCKITLKETFLTSPEELYRVFTTQEL-VQAFTHAPA------TLEADRGGK--FHMVDGN----VSGEFTDLVPEKH-IV   68 (132)
T ss_dssp             EEEEEEEEEESSCHHHHHHHTTCHHH-HHHHSCSCC------BCCCSTTCC--CBBTTTT----EECCEEEEETTTE-EE
T ss_pred             ceEEEEEEEECCCHHHHHHHHcCHHH-HHhhhCCcc------ccccccCCE--EEEEecc----eeEEEEEEeCCCE-EE
Confidence            467899999999999999999 8775 788874312      233222221  2222221    2225677877776 44


Q ss_pred             EEEEeccccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEE
Q 031431           82 YSVIEGNDLADYKLEKISFEHQWRASPNGGSICKTICKLHA  122 (159)
Q Consensus        82 y~v~eg~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~  122 (159)
                      |+---.+.-.. .  ..+++++|++. +++|.++.+-+.-|
T Consensus        69 ~tw~~~~~~~~-~--~s~vt~~l~~~-~~~T~l~l~~~g~p  105 (132)
T d1x53a1          69 MKWRFKSWPEG-H--FATITLTFIDK-NGETELCMEGRGIP  105 (132)
T ss_dssp             EEEEETTSCTT-C--CEEEEEECCBC-SSCEEEEEEEEEEE
T ss_pred             EEEecCCCCCC-C--cEEEEEEEEEC-CCcEEEEEEEECCC
Confidence            54321221111 1  12456667776 45799888876544

>d1jssa_ d.129.3.2 (A:) Cholesterol-regulated Start protein 4 (Stard4). {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: STAR domain
domain: Cholesterol-regulated Start protein 4 (Stard4).
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.55  E-value=0.0054  Score=43.57  Aligned_cols=144  Identities=8%  Similarity=0.005  Sum_probs=81.7

Q ss_pred             EEEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEe--cCC---ceeEEEEEEEEEeccc
Q 031431            4 VTYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIV--EGG---QVKYAKHKIEEEDKVN   77 (159)
Q Consensus         4 ~~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~--~g~---~~~~~kErl~~~D~~~   77 (159)
                      ..+..+..|++|++++++.+ |... .++|.|. +.++++++..+.-..+-...+.  ...   +-..+--|...-++..
T Consensus        44 ~~~r~~~~i~~~~~~v~~~l~d~~~-~~~Wd~~-~~~~~~le~~~~~~~i~~~~~~~~~~~~v~~RD~v~~~~~~~~~~~  121 (199)
T d1jssa_          44 YLYKAQGVMDDVVNNVIDHIRPGPW-RLDWDRL-MTSLDVLEHFEENCCVMRYTTAGQLLNIISPREFVDFSYTVGYEEG  121 (199)
T ss_dssp             EEEEEEEEESSCHHHHHHHHSSSTT-HHHHCSS-EEEEEEEEECSTTEEEEEEEECCBTTTTBCCEEEEEEEEEEEETTE
T ss_pred             EEEEEEEEeCCCHHHHHHHHhChhh-hhhcccc-hheEEEEEEcCCCcEEEEEEEcccCCCCcCCcEEEEEEEEEEcCCc
Confidence            45788999999999999999 9887 8999996 8899988765332344332222  111   1122222222233333


Q ss_pred             ceEEEEEEeccc-cCCCc-eeEEEEEEEEEECCCC--CeEEEEEEEEEEcCCCCCCHHHHH-hHHHHHHHHHHHHHHHH
Q 031431           78 LKLKYSVIEGND-LADYK-LEKISFEHQWRASPNG--GSICKTICKLHAKGEVEVTEEQAK-AGKERVLGVVKGVEAYL  151 (159)
Q Consensus        78 ~~~~y~v~eg~~-l~~Y~-~~~~~~~~~~~p~~~g--~t~v~W~~~~e~~~~~~~~~~~~~-~~~~~~~~~~k~le~~l  151 (159)
                      ..+........+ .+.|- .......+.+.|.++|  +|.++|....++.|.  .|.-.++ .+......+++.|.+.|
T Consensus       122 ~~~~~~~~~~~p~~~~~VR~~~~~~~~~i~p~~~~~~~t~vt~~~~~Dp~G~--iP~~lvn~~~~~~~~~~~~~Lr~~l  198 (199)
T d1jssa_         122 LLSCGVSVEWSETRPEFVRGYNHPCGWFCVPLKDSPSQSLLTGYIQTDLRGM--IPQSAVDTAMASTLANFYSDLRKGL  198 (199)
T ss_dssp             EEEEEEECCCCCCCTTSEECEECSEEEEEEEETTEEEEEEEEEEECEECCSC--CCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             EEEEEEecCCCCCCCceEEEEEeeeeEEEEEcCCCCCcEEEEEEEEcCCCCC--CcHHHHHHHHHHHHHHHHHHHHHhc
Confidence            332222222222 22221 1111123345676554  699999998898874  4455544 34455566777776655

>d2ffsa1 d.129.3.7 (A:1-151) Hypothetical protein PA1206 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: PA1206-like
domain: Hypothetical protein PA1206
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.29  E-value=0.0063  Score=42.46  Aligned_cols=131  Identities=8%  Similarity=0.065  Sum_probs=77.5

Q ss_pred             EEEEEEEEcCCH---------HHHHhhh--cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEecCCceeEEEEEEEEE
Q 031431            5 TYESEETYAVPP---------ARMFNAL--ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQVKYAKHKIEEE   73 (159)
Q Consensus         5 ~~~~e~~i~apa---------~~vW~~~--d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~~~~kErl~~~   73 (159)
                      +|++-++||-|+         +++|+-+  ...+ -....|+ +.+|++++.++. +-.|.++|+++    .++|++. +
T Consensus         2 ~feHlv~IN~p~~p~~p~LTr~QlW~GL~lrar~-p~~Fv~~-l~~c~v~~~~~~-~~~Rel~fg~~----~v~e~Vt-l   73 (151)
T d2ffsa1           2 QFEHLVQVNDRTLVDLPVLDRLQLWEGLVCRARE-PQYFVVG-LERFEILVDDGD-RLHRRLYLPGL----VVEDEVV-L   73 (151)
T ss_dssp             CEEEEEECCCCCC---CCCCHHHHHHHHHHHHHC-GGGTCTT-CCEEEEEEECSS-EEEEEEEETTE----EEEEEEE-E
T ss_pred             cceEEEecCCCCCCCCCccCHHHHHHHHHHhhcC-Hhhcccc-cceEEEEEecCC-eEEEEEEECCc----eeEEEEE-E
Confidence            577778887764         5899988  4333 2256675 999999977644 78899999654    7899977 5


Q ss_pred             ecccceEEEEEEeccccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEE-cCC----CCCCHHHHHh-HHHHHHHHHHHH
Q 031431           74 DKVNLKLKYSVIEGNDLADYKLEKISFEHQWRASPNGGSICKTICKLHA-KGE----VEVTEEQAKA-GKERVLGVVKGV  147 (159)
Q Consensus        74 D~~~~~~~y~v~eg~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~-~~~----~~~~~~~~~~-~~~~~~~~~k~l  147 (159)
                      .+..+ +.|.+..-..-   .-.+.+.++  ....+|  -+-.++.|+. .++    ...-.+.++. .++...+..+.|
T Consensus        74 ~~~~~-v~f~~~a~~~~---~g~~l~~~I--eep~~g--~L~lrf~Ye~~~p~~~~~~~~~~e~~ksaY~~ad~dTvr~I  145 (151)
T d2ffsa1          74 KAPDS-AHYSIKPSAEV---AGGSLDMTI--EEPEPG--SLFVRFAYCTRYLQPLGDELPYDAFVKQAYIAMDVETIATI  145 (151)
T ss_dssp             ETTTE-EEEEECCCSSS---BEEEEEEEE--EEEETT--EEEEEEEEEEECSCC--CCCCCBHHHHHHHHHHHHHHHHHH
T ss_pred             cCCcE-EEEEcccccCC---CCcEEEEEE--ccCCCC--eEEEEEEEEcCCCCCCcchhhHHHHHHHHHHHHhHHHHHHH
Confidence            55555 47766542211   122233333  322233  3444556653 222    2234456663 455557777777


Q ss_pred             HHHH
Q 031431          148 EAYL  151 (159)
Q Consensus       148 e~~l  151 (159)
                      =+|+
T Consensus       146 Re~~  149 (151)
T d2ffsa1         146 RDRF  149 (151)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            6664

>d1em2a_ d.129.3.2 (A:) Lipid transport domain of Mln64 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: STAR domain
domain: Lipid transport domain of Mln64
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.16  E-value=0.02  Score=40.89  Aligned_cols=145  Identities=8%  Similarity=-0.021  Sum_probs=83.6

Q ss_pred             EEEEEEEcCCHHHHHh-hh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEe-cCC----ceeEEEEEEEEEecccc
Q 031431            6 YESEETYAVPPARMFN-AL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIV-EGG----QVKYAKHKIEEEDKVNL   78 (159)
Q Consensus         6 ~~~e~~i~apa~~vW~-~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~-~g~----~~~~~kErl~~~D~~~~   78 (159)
                      +..+.++++|+++++. ++ |... .++|.|. +.++++++--+.-..|-...+. ...    +-.++--|-...++...
T Consensus        54 ~k~~~~i~~~~~~v~~~~~~d~e~-~~~Wd~~-~~~~~ile~~~~~~~i~~~~~~~~~~~~vs~RD~v~~~~~~~~~~~~  131 (214)
T d1em2a_          54 FILKTFLPCPAELVYQEVILQPER-MVLWNKT-VTACQILQRVEDNTLISYDVSAGAAGGVVSPRDFVNVRRIERRRDRY  131 (214)
T ss_dssp             EEEEEEESSCHHHHHHHTTTCHHH-HTTTCTT-EEEEEEEEEETTTEEEEEEEECCBTTTTBCCEEEEEEEEEEECSSEE
T ss_pred             EEEEEEEeCCHHHHHHHHHhChHH-HHHHHHH-HhheEEEEEcCCCceEEEEEecccCCCCCCCcEEEEEEEEEEcCCcE
Confidence            5788899999999986 66 7776 7999996 8888887652211222222222 121    11344445444555555


Q ss_pred             eEEEEEEeccc---cCCCc-eeEEEEEEEEEECC--CCCeEEEEEEEEEEcCCCCCCHHHHH-hHHHHHHHHHHHHHHHH
Q 031431           79 KLKYSVIEGND---LADYK-LEKISFEHQWRASP--NGGSICKTICKLHAKGEVEVTEEQAK-AGKERVLGVVKGVEAYL  151 (159)
Q Consensus        79 ~~~y~v~eg~~---l~~Y~-~~~~~~~~~~~p~~--~g~t~v~W~~~~e~~~~~~~~~~~~~-~~~~~~~~~~k~le~~l  151 (159)
                      .+...-+.-+.   ...|. .........+.|.+  +++|.++|.+..+|.+.  .|.-.++ .+......+++.|.+++
T Consensus       132 ~~~~~s~~~~~~p~~~~~vR~~~~~~~~~i~p~~~~~~~t~vt~~~~~Dp~G~--iP~~lvn~~~~~~~~~~~~~Lrk~~  209 (214)
T d1em2a_         132 LSSGIATSHSAKPPTHKYVRGENGPGGMIVLKSASNPRVCTFVWILNTDLKGR--LPRYLIHQSLAATMFEFAFHLRQRI  209 (214)
T ss_dssp             EEEEEECCCTTSCCCTTSEECEECSEEEEEEECSSCTTCEEEEEEECEECCSS--SCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEeeccccccCCCCeEEEEEEeeeEEEEECCCCCCeEEEEEEEEeCCCCC--CCHHHHHHHHHHhHHHHHHHHHHHH
Confidence            44443332221   11211 11111223346644  35799999999999875  4455444 44455678888888888


Q ss_pred             hhC
Q 031431          152 QAN  154 (159)
Q Consensus       152 ~~~  154 (159)
                      .+.
T Consensus       210 ~k~  212 (214)
T d1em2a_         210 SEL  212 (214)
T ss_dssp             HHT
T ss_pred             HHh
Confidence            764

>d1ln1a_ d.129.3.2 (A:) Phosphatidylcholine transfer protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: STAR domain
domain: Phosphatidylcholine transfer protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.40  E-value=0.082  Score=37.09  Aligned_cols=143  Identities=14%  Similarity=0.058  Sum_probs=77.8

Q ss_pred             EEEEEEEEEc-CCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEecCCce---eEEE-EEEEEEeccc
Q 031431            4 VTYESEETYA-VPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQV---KYAK-HKIEEEDKVN   77 (159)
Q Consensus         4 ~~~~~e~~i~-apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~---~~~k-Erl~~~D~~~   77 (159)
                      ..+..+.+|. +|++.++.++ |... .++|.|. +.++.....++.  .|-.+.+..-.+.   ..+- -+....+++.
T Consensus        45 ~~~k~~~~i~~~~~~~~~~~l~d~~~-~~~Wd~~-~~~~~~~~~~~~--~i~y~~~~~p~p~~~RD~v~~~~~~~~~~~~  120 (203)
T d1ln1a_          45 YEYKVFGVLEDCSPTLLADIYMDSDY-RKQWDQY-VKELYEQECNGE--TVVYWEVKYPFPMSNRDYVYLRQRRDLDMEG  120 (203)
T ss_dssp             EEEEEEEEETTSCHHHHHHHHHCHHH-HHHHCTT-EEEEEEEEETTE--EEEEEEECCCTTSCCEEEEEEEEEEEECSTT
T ss_pred             EEEEEEEEEcCCCHHHHHHHHcCHhH-hhhhccc-ceEEEEEccCCc--EEEEEEcccccccCCceEEEEEEEEEccCCC
Confidence            4577888895 9999999999 8876 7999997 555543322221  2323333322221   2222 2223333443


Q ss_pred             ceEEEEEE---ecc-c--cCCCce-eEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHHH-hHHHHHHHHHHHHHH
Q 031431           78 LKLKYSVI---EGN-D--LADYKL-EKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAK-AGKERVLGVVKGVEA  149 (159)
Q Consensus        78 ~~~~y~v~---eg~-~--l~~Y~~-~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~~-~~~~~~~~~~k~le~  149 (159)
                      ..+...+.   +-+ .  .+.|.. ......+.++|.++++|.+++....+|.+.  .|.-.++ .++.....+++.|..
T Consensus       121 ~~~~v~~~~~~~~~~~p~~~~~vR~~~~~~~~~l~~~~~~~t~v~~~~~~Dp~G~--iP~~lvn~~~~~~~~~~~~~l~k  198 (203)
T d1ln1a_         121 RKIHVILARSTSMPQLGERSGVIRVKQYKQSLAIESDGKKGSKVFMYYFDNPGGQ--IPSWLINWAAKNGVPNFLKDMAR  198 (203)
T ss_dssp             CCEEEEEEEECCBTTBCCCTTSEEECCEEEEEEEEECSSSSEEEEEEEEECCSSC--CCHHHHHHHHHTHHHHHHHHHHH
T ss_pred             CeEEEEEeecccCCcCcccCCccccceeeEEEEEEecCCCcEEEEEEEEcCCCCc--CHHHHHHHHHHHHHHHHHHHHHH
Confidence            32222211   111 1  112211 111223456888778899999998888764  4444444 445555677777766


Q ss_pred             HHh
Q 031431          150 YLQ  152 (159)
Q Consensus       150 ~l~  152 (159)
                      ..+
T Consensus       199 ~~~  201 (203)
T d1ln1a_         199 ACQ  201 (203)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            554

>d2psoa1 d.129.3.2 (A:908-1104) Star-related lipid transfer protein 13 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: STAR domain
domain: Star-related lipid transfer protein 13
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.97  E-value=3.3  Score=28.30  Aligned_cols=117  Identities=15%  Similarity=0.169  Sum_probs=62.9

Q ss_pred             EEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEecCCc---eeEEEEEEEEEecccc--
Q 031431            5 TYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQ---VKYAKHKIEEEDKVNL--   78 (159)
Q Consensus         5 ~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~---~~~~kErl~~~D~~~~--   78 (159)
                      .+..+.+++++++++...+ +.   .+.|.|. +..+++++--+.--.|-...+..-.+   -..+-.+-...+.++.  
T Consensus        45 ~~k~~~~i~a~~~~vl~~~l~~---r~~Wd~~-~~~~~~le~~~~~~~i~y~~~~~p~pvs~RD~v~~~~~~~~~~~~~~  120 (197)
T d2psoa1          45 LWKASVEVEAPPSVVLNRVLRE---RHLWDED-FVQWKVVETLDRQTEIYQYVLNSMAPHPSRDFVVLRTWKTDLPKGMC  120 (197)
T ss_dssp             EEEEEEEESSCHHHHHHHHHHC---GGGTCTT-BCCCEEEEEEETTEEEEEEEECCSSSCCCEEEEEEEEEESCCGGGCE
T ss_pred             EEEEEEEEcCCHHHHHHHHHHh---HHHHhhh-hheEEEEEEcCCCCEEEEEEccCCCcccceeEEEEEEEEEeCCCCEE
Confidence            4567788999999998766 53   3689996 66777765321101122222221111   1233333333443333  


Q ss_pred             eEEEEEEeccc--cC-CCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCC
Q 031431           79 KLKYSVIEGND--LA-DYKLEKISFEHQWRASPNGGSICKTICKLHAKGE  125 (159)
Q Consensus        79 ~~~y~v~eg~~--l~-~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~  125 (159)
                      .+...-++.+.  .. ..+.......+.++|.++++|.+++.+..+|.|.
T Consensus       121 ~i~~~Sv~~~~~p~~~~VR~~~~~~~~~i~p~~~~~t~vt~~~~~Dp~G~  170 (197)
T d2psoa1         121 TLVSLSVEHEEAQLLGGVRAVVMDSQYLIEPCGSGKSRLTHICRIDLKGH  170 (197)
T ss_dssp             EEEEEECCCTTCCCCSSEECCEEEEEEEEEECSTTCEEEEEEEEECCSSS
T ss_pred             EEEEEeccccCCCCCCcEEEEEEeccEEEEECCCCcEEEEEEEEECCCCc
Confidence            33322233221  11 1122223334556898888899999999999765