Citrus Sinensis ID: 031432

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------16
MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALKDIGPK
ccccccccccccccccccEEEEEcccccccEEEEEcccEEEEEEEEEcccccccccEEEEEEEEcccccEEEEEEccccEEEccEEEEcEEEEEEEccccEEEEEEccccEEEEEcccccHHHHHHHHHHHcccccEEEEEEccccEEEEEEEcccccc
ccccccccccccccccccccHHHHHHcccccEEEEccEEEEEEEEEEcccccccccEEEEEEEEcccccEEEEEEEcccEEEEEcEEEEEEEEEEEEcccEEEEEccccccccHccccccHHHHHHHHHHHHccccEEEEEEHHccHHHHHHHHHcccc
msdeehhfeskadagasktfpqqagtirkngyivikgrpckvvevstsktgkhghakchfvgidifngkkledivpsshncdvphvtrtdyqlidisEDGFVSLLTengntkddlrlptdenLLSQIKDGFESGKDLVVSVQCAMGEEQINALKDIGPK
msdeehhfeskadagasktfpqqagtirkngyivikGRPCKVVEVStsktgkhghakchFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTEngntkddlrlptDENLLSQIKDGFESGKDLVVSVQCAMGeeqinalkdigpk
MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALKDIGPK
*************************TIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTEN******************IKDGFESGKDLVVSVQCAM**************
******H***********TFPQQAGTIRKNGYIVIKGRPCKVVEV*******HGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALKDIG**
*****************KTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALKDIGPK
*****************KTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALKDIG**
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALKDIGPK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query159 2.2.26 [Sep-21-2011]
Q9AXQ5160 Eukaryotic translation in N/A no 1.0 0.993 0.924 2e-83
Q9AXQ4159 Eukaryotic translation in N/A no 1.0 1.0 0.930 6e-83
P56335160 Eukaryotic translation in N/A no 1.0 0.993 0.918 8e-83
Q9AXJ4160 Eukaryotic translation in N/A no 1.0 0.993 0.930 1e-82
P56336159 Eukaryotic translation in N/A no 1.0 1.0 0.918 3e-82
P24922159 Eukaryotic translation in N/A no 1.0 1.0 0.918 2e-81
Q9AXQ3160 Eukaryotic translation in N/A no 1.0 0.993 0.899 2e-80
P56333160 Eukaryotic translation in N/A no 1.0 0.993 0.899 4e-80
Q945F4159 Eukaryotic translation in N/A no 1.0 1.0 0.893 1e-79
P80639160 Eukaryotic translation in N/A no 1.0 0.993 0.881 2e-79
>sp|Q9AXQ5|IF5A2_SOLLC Eukaryotic translation initiation factor 5A-2 OS=Solanum lycopersicum PE=2 SV=1 Back     alignment and function desciption
 Score =  307 bits (787), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 147/159 (92%), Positives = 152/159 (95%)

Query: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120
           V IDIFNGKKLEDIVPSSHNCDVPHV RTDYQLIDISEDGFVSLLTE+GNTKDDLRLPTD
Sbjct: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTESGNTKDDLRLPTD 120

Query: 121 ENLLSQIKDGFESGKDLVVSVQCAMGEEQINALKDIGPK 159
           ENLL Q+KDGF+ GKDLVVSV  AMGEEQINA+KD+G K
Sbjct: 121 ENLLKQVKDGFQEGKDLVVSVMSAMGEEQINAVKDVGTK 159
The precise role of eIF-5A in protein biosynthesis is not known but it functions by promoting the formation of the first peptide bond.
Solanum lycopersicum (taxid: 4081)
>sp|Q9AXQ4|IF5A3_SOLLC Eukaryotic translation initiation factor 5A-3 OS=Solanum lycopersicum PE=2 SV=1 Back     alignment and function description
>sp|P56335|IF5A3_SOLTU Eukaryotic translation initiation factor 5A-3 OS=Solanum tuberosum GN=EIF5A3 PE=2 SV=1 Back     alignment and function description
>sp|Q9AXJ4|IF5A_MANES Eukaryotic translation initiation factor 5A OS=Manihot esculenta PE=2 SV=2 Back     alignment and function description
>sp|P56336|IF5A4_SOLTU Eukaryotic translation initiation factor 5A-4 OS=Solanum tuberosum GN=EIF5A4 PE=2 SV=1 Back     alignment and function description
>sp|P24922|IF5A2_NICPL Eukaryotic translation initiation factor 5A-2 OS=Nicotiana plumbaginifolia GN=EIF-5A2 PE=2 SV=1 Back     alignment and function description
>sp|Q9AXQ3|IF5A4_SOLLC Eukaryotic translation initiation factor 5A-4 OS=Solanum lycopersicum PE=2 SV=1 Back     alignment and function description
>sp|P56333|IF5A1_SOLTU Eukaryotic translation initiation factor 5A-1/2 OS=Solanum tuberosum GN=EIF5A1 PE=2 SV=1 Back     alignment and function description
>sp|Q945F4|IF5A2_MEDSA Eukaryotic translation initiation factor 5A-2 OS=Medicago sativa PE=2 SV=1 Back     alignment and function description
>sp|P80639|IF5A_MAIZE Eukaryotic translation initiation factor 5A OS=Zea mays GN=TIF5A PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query159
255542136 509 initiation factor 5a, putative [Ricinus 1.0 0.312 0.937 1e-82
33325127159 eukaryotic translation initiation factor 1.0 1.0 0.937 6e-82
151347490159 translation initiation factor [Carica pa 1.0 1.0 0.937 7e-82
192910692159 eukaryotic translation initiation factor 1.0 1.0 0.943 8e-82
350536449160 eukaryotic translation initiation factor 1.0 0.993 0.924 9e-82
33325117160 eukaryotic translation initiation factor 1.0 0.993 0.937 1e-81
33325129159 eukaryotic translation initiation factor 1.0 1.0 0.930 2e-81
33325131158 eukaryotic translation initiation factor 0.993 1.0 0.936 3e-81
350536527159 eukaryotic translation initiation factor 1.0 1.0 0.930 3e-81
3024020160 RecName: Full=Eukaryotic translation ini 1.0 0.993 0.918 4e-81
>gi|255542136|ref|XP_002512132.1| initiation factor 5a, putative [Ricinus communis] gi|223549312|gb|EEF50801.1| initiation factor 5a, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  310 bits (795), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 149/159 (93%), Positives = 152/159 (95%)

Query: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKT+PQQAGTIRKNGYIVIK RPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 351 MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 410

Query: 61  VGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120
           VGIDIFN KKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD
Sbjct: 411 VGIDIFNAKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 470

Query: 121 ENLLSQIKDGFESGKDLVVSVQCAMGEEQINALKDIGPK 159
           ENLLSQIKDGF  GKDLVV+V  +MGEEQI ALKDIGPK
Sbjct: 471 ENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALKDIGPK 509

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|33325127|gb|AAQ08196.1| eukaryotic translation initiation factor 5A isoform VI [Hevea brasiliensis] Back     alignment and taxonomy information
>gi|151347490|gb|ABS01354.1| translation initiation factor [Carica papaya] Back     alignment and taxonomy information
>gi|192910692|gb|ACF06454.1| eukaryotic translation initiation factor 5A isoform IV [Elaeis guineensis] Back     alignment and taxonomy information
>gi|350536449|ref|NP_001234503.1| eukaryotic translation initiation factor 5A-2 [Solanum lycopersicum] gi|20138707|sp|Q9AXQ5.1|IF5A2_SOLLC RecName: Full=Eukaryotic translation initiation factor 5A-2; Short=eIF-5A-2 gi|12407789|gb|AAG53648.1|AF296084_1 eukaryotic translation initiation factor 5A-2 [Solanum lycopersicum] Back     alignment and taxonomy information
>gi|33325117|gb|AAQ08191.1| eukaryotic translation initiation factor 5A isoform I [Hevea brasiliensis] gi|33325119|gb|AAQ08192.1| eukaryotic translation initiation factor 5A isoform II [Hevea brasiliensis] Back     alignment and taxonomy information
>gi|33325129|gb|AAQ08197.1| eukaryotic translation initiation factor 5A isoform VII [Hevea brasiliensis] Back     alignment and taxonomy information
>gi|33325131|gb|AAQ08198.1| eukaryotic translation initiation factor 5A isoform VIII [Hevea brasiliensis] Back     alignment and taxonomy information
>gi|350536527|ref|NP_001234507.1| eukaryotic translation initiation factor 5A-3 [Solanum lycopersicum] gi|20138706|sp|Q9AXQ4.1|IF5A3_SOLLC RecName: Full=Eukaryotic translation initiation factor 5A-3; Short=eIF-5A-3 gi|12407791|gb|AAG53649.1|AF296085_1 eukaryotic translation initiation factor 5A-3 [Solanum lycopersicum] Back     alignment and taxonomy information
>gi|3024020|sp|P56335.1|IF5A3_SOLTU RecName: Full=Eukaryotic translation initiation factor 5A-3; Short=eIF-5A-3; AltName: Full=eIF-4D gi|2225881|dbj|BAA20877.1| eukaryotic initiation factor 5A3 [Solanum tuberosum] gi|77416917|gb|ABA81854.1| eukaryotic initiation factor 5A3-like [Solanum tuberosum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query159
TAIR|locus:2014784158 ELF5A-1 "eukaryotic elongation 0.993 1.0 0.867 5.3e-72
TAIR|locus:2007176158 ELF5A-3 "eukaryotic elongation 0.993 1.0 0.830 2.4e-69
TAIR|locus:2200570159 FBR12 "FUMONISIN B1-RESISTANT1 0.981 0.981 0.751 1.1e-62
POMBASE|SPBC336.10c169 tif512 "translation elongation 0.955 0.899 0.589 6.2e-46
SGD|S000003808157 ANB1 "Translation elongation f 0.955 0.968 0.587 7.9e-46
GENEDB_PFALCIPARUM|PFL0210c161 PFL0210c "eukaryotic initiatio 0.968 0.956 0.590 1.3e-45
UNIPROTKB|Q8I603161 PFL0210c "Eukaryotic initiatio 0.968 0.956 0.590 1.3e-45
POMBASE|SPAC26H5.10c157 tif51 "translation elongation 0.955 0.968 0.576 1.6e-45
SGD|S000000760157 HYP2 "Translation elongation f 0.955 0.968 0.580 4.4e-45
ZFIN|ZDB-GENE-040426-2229155 eif5a "eukaryotic translation 0.949 0.974 0.584 7.1e-45
TAIR|locus:2014784 ELF5A-1 "eukaryotic elongation factor 5A-1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 728 (261.3 bits), Expect = 5.3e-72, P = 5.3e-72
 Identities = 138/159 (86%), Positives = 146/159 (91%)

Query:     1 MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
             MSDEEHHFES +DAGASKT+PQQAGTIRKNGYIVIK RPCKVVEVSTSKTGKHGHAKCHF
Sbjct:     1 MSDEEHHFES-SDAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 59

Query:    61 VGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120
             V IDIF  KKLEDIVPSSHNCDVPHV RTDYQLIDISEDG+VSLLT+NG+TKDDL+LP D
Sbjct:    60 VAIDIFTSKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGYVSLLTDNGSTKDDLKLPND 119

Query:   121 ENLLSQIKDGFESGKDLVVSVQCAMGEEQINALKDIGPK 159
             + LL QIK GF+ GKDLVVSV  AMGEEQINALKDIGPK
Sbjct:   120 DTLLQQIKSGFDDGKDLVVSVMSAMGEEQINALKDIGPK 158
GO:0003723 "RNA binding" evidence=IEA
GO:0003743 "translation initiation factor activity" evidence=ISS
GO:0003746 "translation elongation factor activity" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0006413 "translational initiation" evidence=ISS
GO:0006452 "translational frameshifting" evidence=IEA
GO:0008612 "peptidyl-lysine modification to hypusine" evidence=IEA
GO:0043022 "ribosome binding" evidence=IEA
GO:0045901 "positive regulation of translational elongation" evidence=IEA
GO:0045905 "positive regulation of translational termination" evidence=IEA
GO:0010089 "xylem development" evidence=IMP
TAIR|locus:2007176 ELF5A-3 "eukaryotic elongation factor 5A-3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2200570 FBR12 "FUMONISIN B1-RESISTANT12" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
POMBASE|SPBC336.10c tif512 "translation elongation factor eIF5A (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
SGD|S000003808 ANB1 "Translation elongation factor eIF-5A" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
GENEDB_PFALCIPARUM|PFL0210c PFL0210c "eukaryotic initiation factor 5a, putative" [Plasmodium falciparum (taxid:5833)] Back     alignment and assigned GO terms
UNIPROTKB|Q8I603 PFL0210c "Eukaryotic initiation factor 5a, putative" [Plasmodium falciparum 3D7 (taxid:36329)] Back     alignment and assigned GO terms
POMBASE|SPAC26H5.10c tif51 "translation elongation factor eIF5A (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
SGD|S000000760 HYP2 "Translation elongation factor eIF-5A" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-2229 eif5a "eukaryotic translation initiation factor 5A" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q5R898IF5A2_PONABNo assigned EC number0.60.89930.9346yesno
P19211IF5A2_YEASTNo assigned EC number0.58700.95590.9681yesno
Q93VP3IF5A2_ARATHNo assigned EC number0.75150.98110.9811nono
Q9GZV4IF5A2_HUMANNo assigned EC number0.60.89930.9346yesno
P69039IF5A1_NICPLNo assigned EC number0.88671.01.0N/Ano
Q07460IF5A2_CHICKNo assigned EC number0.58620.89930.9346yesno
Q9SC12IF5A_SENVENo assigned EC number0.89301.01.0N/Ano
P56289IF5A1_SCHPONo assigned EC number0.56770.96220.9745yesno
P80639IF5A_MAIZENo assigned EC number0.88121.00.9937N/Ano
Q9UST4IF5A2_SCHPONo assigned EC number0.58060.96220.9053yesno
P13651IF5A_DICDINo assigned EC number0.51030.89930.8993yesno
P38672IF5A_NEUCRNo assigned EC number0.56120.95590.9325N/Ano
P56337IF5A5_SOLTUNo assigned EC number0.88051.01.0N/Ano
P56336IF5A4_SOLTUNo assigned EC number0.91821.01.0N/Ano
P56335IF5A3_SOLTUNo assigned EC number0.91821.00.9937N/Ano
P69040IF5A1_TOBACNo assigned EC number0.88671.01.0N/Ano
P56333IF5A1_SOLTUNo assigned EC number0.89931.00.9937N/Ano
Q945F4IF5A2_MEDSANo assigned EC number0.89301.01.0N/Ano
P24922IF5A2_NICPLNo assigned EC number0.91821.01.0N/Ano
Q20751IF5A2_CAEELNo assigned EC number0.55550.88050.8695yesno
Q8BGY2IF5A2_MOUSENo assigned EC number0.60.89930.9346yesno
Q9XI91IF5A1_ARATHNo assigned EC number0.86790.99371.0yesno
P62925IF5A_SPOFRNo assigned EC number0.58700.95590.95N/Ano
P62924IF5A_SPOEXNo assigned EC number0.58700.95590.95N/Ano
Q9AXQ4IF5A3_SOLLCNo assigned EC number0.93081.01.0N/Ano
Q9AXQ5IF5A2_SOLLCNo assigned EC number0.92451.00.9937N/Ano
Q9AXQ6IF5A1_SOLLCNo assigned EC number0.88051.01.0N/Ano
Q9AXQ7IF5A_DIACANo assigned EC number0.81410.98110.975N/Ano
Q9AXQ3IF5A4_SOLLCNo assigned EC number0.89931.00.9937N/Ano
Q9C505IF5A3_ARATHNo assigned EC number0.83010.99371.0nono
O94083IF5A_CANALNo assigned EC number0.56410.95590.9681N/Ano
P26564IF5A1_MEDSANo assigned EC number0.8751.00.9875N/Ano
Q9GU68IF5A_DROMENo assigned EC number0.55190.95590.9559yesno
Q9AXJ4IF5A_MANESNo assigned EC number0.93081.00.9937N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00016285001
SubName- Full=Putative uncharacterized protein (Chromosome chr17 scaffold_12, whole genome shotgun sequence); (159 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00025575001
SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (307 aa)
   •  • 0.867
GSVIVG00023139001
SubName- Full=Chromosome chr8 scaffold_29, whole genome shotgun sequence; (136 aa)
   •  • 0.830
GSVIVG00017873001
SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (362 aa)
•  •••• 0.827
GSVIVG00031140001
SubName- Full=Chromosome chr14 scaffold_54, whole genome shotgun sequence; (234 aa)
   •• • 0.804
GSVIVG00036621001
SubName- Full=Putative uncharacterized protein (Chromosome chr3 scaffold_8, whole genome shotgu [...] (144 aa)
• ••  • 0.762
GSVIVG00019940001
SubName- Full=Putative uncharacterized protein (Chromosome chr5 scaffold_2, whole genome shotgu [...] (144 aa)
• ••  • 0.755
GSVIVG00016417001
SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (83 aa)
   •  • 0.750
GSVIVG00001285001
SubName- Full=Chromosome chr8 scaffold_115, whole genome shotgun sequence; (246 aa)
  ••  • 0.732
GSVIVG00024035001
SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (246 aa)
  ••  • 0.729
GSVIVG00018776001
SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (173 aa)
   •  • 0.722

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query159
PLN03107159 PLN03107, PLN03107, eukaryotic translation initiat 1e-109
PTZ00328166 PTZ00328, PTZ00328, eukaryotic initiation factor 5 2e-50
TIGR00037130 TIGR00037, eIF_5A, translation elongation factor I 5e-42
pfam0128769 pfam01287, eIF-5a, Eukaryotic elongation factor 5A 7e-31
cd0446869 cd04468, S1_eIF5A, S1_eIF5A: Eukaryotic translatio 3e-28
COG0231131 COG0231, Efp, Translation elongation factor P (EF- 5e-26
PRK03999129 PRK03999, PRK03999, translation initiation factor 2e-20
TIGR00038184 TIGR00038, efp, translation elongation factor P 0.001
cd0446975 cd04469, S1_Hex1, S1_Hex1: Hex1, S1-like RNA-bindi 0.002
>gnl|CDD|215580 PLN03107, PLN03107, eukaryotic translation initiation factor 5A; Provisional Back     alignment and domain information 
 Score =  307 bits (788), Expect = e-109
 Identities = 138/160 (86%), Positives = 146/160 (91%), Gaps = 2/160 (1%)

Query: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFES ADAGASKT+PQQAGTIRK GYIVIKGRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFES-ADAGASKTYPQQAGTIRKGGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 59

Query: 61  VGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPT- 119
           V IDIF GKKLEDIVPSSHNCDVPHV RTDYQLIDISEDGFVSL+ E+GNTKDDL+LPT 
Sbjct: 60  VAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLMDESGNTKDDLKLPTE 119

Query: 120 DENLLSQIKDGFESGKDLVVSVQCAMGEEQINALKDIGPK 159
           D+ L  QIKDGF+ GKDLVV+V  AMGEEQI ALK+IGPK
Sbjct: 120 DDTLAEQIKDGFDEGKDLVVTVMSAMGEEQICALKEIGPK 159

Length = 159
>gnl|CDD|140349 PTZ00328, PTZ00328, eukaryotic initiation factor 5a; Provisional Back     alignment and domain information
>gnl|CDD|129148 TIGR00037, eIF_5A, translation elongation factor IF5A Back     alignment and domain information
>gnl|CDD|216413 pfam01287, eIF-5a, Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold Back     alignment and domain information
>gnl|CDD|239914 cd04468, S1_eIF5A, S1_eIF5A: Eukaryotic translation Initiation Factor 5A (eIF5A), S1-like RNA-binding domain Back     alignment and domain information
>gnl|CDD|223309 COG0231, Efp, Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|235193 PRK03999, PRK03999, translation initiation factor IF-5A; Provisional Back     alignment and domain information
>gnl|CDD|213496 TIGR00038, efp, translation elongation factor P Back     alignment and domain information
>gnl|CDD|239915 cd04469, S1_Hex1, S1_Hex1: Hex1, S1-like RNA-binding domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 159
PLN03107159 eukaryotic translation initiation factor 5A; Provi 100.0
PTZ00328166 eukaryotic initiation factor 5a; Provisional 100.0
TIGR00037130 eIF_5A translation initiation factor eIF-5A. Obser 100.0
PRK03999129 translation initiation factor IF-5A; Provisional 100.0
KOG3271156 consensus Translation initiation factor 5A (eIF-5A 100.0
COG0231131 Efp Translation elongation factor P (EF-P)/transla 100.0
PRK12426185 elongation factor P; Provisional 100.0
PRK14578187 elongation factor P; Provisional 100.0
PRK04542189 elongation factor P; Provisional 100.0
PRK00529186 elongation factor P; Validated 100.0
TIGR02178186 yeiP elongation factor P-like protein YeiP. This m 100.0
TIGR00038184 efp translation elongation factor P. function: inv 100.0
PF0820758 EFP_N: Elongation factor P (EF-P) KOW-like domain; 99.85
PF0128769 eIF-5a: Eukaryotic elongation factor 5A hypusine, 99.59
cd0447061 S1_EF-P_repeat_1 S1_EF-P_repeat_1: Translation elo 99.54
cd0446869 S1_eIF5A S1_eIF5A: Eukaryotic translation Initiati 99.49
PF0113255 EFP: Elongation factor P (EF-P) OB domain; InterPr 99.48
cd0446975 S1_Hex1 S1_Hex1: Hex1, S1-like RNA-binding domain. 99.38
cd0446355 S1_EF_like S1_EF_like: EF-like, S1-like RNA-bindin 99.29
cd0446757 S1_aIF5A S1_aIF5A: Archaeal translation Initiation 98.84
COG1499355 NMD3 NMD protein affecting ribosome stability and 96.99
>PLN03107 eukaryotic translation initiation factor 5A; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.8e-50  Score=314.80  Aligned_cols=155  Identities=83%  Similarity=1.236  Sum_probs=145.5

Q ss_pred             CCccccccccccCCCcceeeEEeccccCCceEEEEcCeEEEEEEeeeecCCCCCceEEEEEEEECCCCcEEEEEEeCCCc
Q 031432            1 MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHN   80 (159)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~t~~i~~~~ikkG~~i~~~g~p~~Vve~~~~kpGKhG~a~vr~k~knl~TG~~~E~t~~s~~~   80 (159)
                      |++.+++|+ +++|++|.|+|+++++||+|++|+++|+||+|++++|+||||||+|++|+++|||+||+++|.+|+|+++
T Consensus         1 ~~~~~~~~~-~~~~~~~~t~m~~~~~lKkG~~I~~~g~pc~V~e~~~~KpGKHG~A~vr~k~knl~TG~k~e~~f~s~~~   79 (159)
T PLN03107          1 MSDEEHHFE-SADAGASKTYPQQAGTIRKGGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTGKKLEDIVPSSHN   79 (159)
T ss_pred             CCccccccc-ccccCCCceeccchHhccCCCEEEECCEEEEEEEEEecCCCCCCcEEEEEEEEECCCCCEEEEEecCCCE
Confidence            788668999 9999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eecceEEeeeEEEEEeeCCCc-EEEecC--CCCeeeeccCCc-hhhHHHHHHhhccCCCeEEEEEEeeCCEEEEEEEecc
Q 031432           81 CDVPHVTRTDYQLIDISEDGF-VSLLTE--NGNTKDDLRLPT-DENLLSQIKDGFESGKDLVVSVQCAMGEEQINALKDI  156 (159)
Q Consensus        81 ve~~~v~~~~~qyly~d~~~~-~~fMD~--etyeq~~i~l~~-~~~l~~~~~~~l~eg~~v~V~~~~~~G~e~v~~~k~~  156 (159)
                      +++|+|++++|||||+|+ +. |+|||+  ++|+|+  .||. +++|...++.+|.+|.++.|++|++||+|+|+++|+.
T Consensus        80 ve~~~ve~~~~qyly~dg-d~y~~fMD~~get~eqi--~v~~~~~el~~~i~~~f~~g~~~~v~v~~~mg~e~i~~~k~~  156 (159)
T PLN03107         80 CDVPHVNRTDYQLIDISE-DGFVSLMDESGNTKDDL--KLPTEDDTLAEQIKDGFDEGKDLVVTVMSAMGEEQICALKEI  156 (159)
T ss_pred             EEEEEEEEEEEEEEEEcC-CceEEEEcCCCCcceeE--EccCcchHHHHHHHHHHhCCCeEEEEEEecCCeEEEEEEEcc
Confidence            999999999999999985 55 599999  588885  5574 3789999999999999999999999999999999999


Q ss_pred             CCC
Q 031432          157 GPK  159 (159)
Q Consensus       157 ~~~  159 (159)
                      .|+
T Consensus       157 ~~~  159 (159)
T PLN03107        157 GPK  159 (159)
T ss_pred             CCC
Confidence            875

>PTZ00328 eukaryotic initiation factor 5a; Provisional Back     alignment and domain information
>TIGR00037 eIF_5A translation initiation factor eIF-5A Back     alignment and domain information
>PRK03999 translation initiation factor IF-5A; Provisional Back     alignment and domain information
>KOG3271 consensus Translation initiation factor 5A (eIF-5A) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG0231 Efp Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK12426 elongation factor P; Provisional Back     alignment and domain information
>PRK14578 elongation factor P; Provisional Back     alignment and domain information
>PRK04542 elongation factor P; Provisional Back     alignment and domain information
>PRK00529 elongation factor P; Validated Back     alignment and domain information
>TIGR02178 yeiP elongation factor P-like protein YeiP Back     alignment and domain information
>TIGR00038 efp translation elongation factor P Back     alignment and domain information
>PF08207 EFP_N: Elongation factor P (EF-P) KOW-like domain; InterPro: IPR013185 This entry represents the N-terminal domain of homologues of elongation factor P, which probably are translation initiation factors Back     alignment and domain information
>PF01287 eIF-5a: Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold; InterPro: IPR020189 A five-stranded beta-barrel was first noted as a common structure among four proteins binding single-stranded nucleic acids (staphylococcal nuclease and aspartyl-tRNA synthetase) or oligosaccharides (B subunits of enterotoxin and verotoxin-1), and has been termed the oligonucleotide/oligosaccharide binding motif, or OB fold, a five-stranded beta-sheet coiled to form a closed beta-barrel capped by an alpha helix located between the third and fourth strands [] Back     alignment and domain information
>cd04470 S1_EF-P_repeat_1 S1_EF-P_repeat_1: Translation elongation factor P (EF-P), S1-like RNA-binding domain, repeat 1 Back     alignment and domain information
>cd04468 S1_eIF5A S1_eIF5A: Eukaryotic translation Initiation Factor 5A (eIF5A), S1-like RNA-binding domain Back     alignment and domain information
>PF01132 EFP: Elongation factor P (EF-P) OB domain; InterPro: IPR001059 Elongation factor P (EF-P) is a prokaryotic protein translation factor required for efficient peptide bond synthesis on 70S ribosomes from fMet-tRNAfMet [] Back     alignment and domain information
>cd04469 S1_Hex1 S1_Hex1: Hex1, S1-like RNA-binding domain Back     alignment and domain information
>cd04463 S1_EF_like S1_EF_like: EF-like, S1-like RNA-binding domain Back     alignment and domain information
>cd04467 S1_aIF5A S1_aIF5A: Archaeal translation Initiation Factor 5A (aIF5A), S1-like RNA-binding domain Back     alignment and domain information
>COG1499 NMD3 NMD protein affecting ribosome stability and mRNA decay [Translation, ribosomal structure and biogenesis] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query159
3hks_A167 Crystal Structure Of Eukaryotic Translation Initiat 8e-63
3er0_A167 Crystal Structure Of The Full Length Eif5a From Sac 4e-48
3cpf_A138 Crystal Structure Of Human Eukaryotic Translation I 2e-41
1x6o_A174 Structural Analysis Of Leishmania Braziliensis Euka 3e-38
1xtd_A174 Structural Analysis Of Leishmania Mexicana Eukaryot 4e-35
2eif_A136 Eukaryotic Translation Initiation Factor 5a From Me 3e-13
1eif_A135 Eukaryotic Translation Initiation Factor 5a From Me 3e-13
1bkb_A136 Initiation Factor 5a From Archebacterium Pyrobaculu 1e-12
1iz6_A138 Crystal Structure Of Translation Initiation Factor 7e-12
1khi_A176 Crystal Structure Of Hex1 Length = 176 3e-09
>pdb|3HKS|A Chain A, Crystal Structure Of Eukaryotic Translation Initiation Factor Eif-5a2 From Arabidopsis Thaliana Length = 167 Back     alignment and structure 
Iteration: 1

 Score =  235 bits (599), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 112/150 (74%), Positives = 132/150 (88%), Gaps = 1/150 (0%)
Query: 8   FESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFN 67
           FE+ +++GASKT+PQ AG IRK G+IVIK RPCKVVEVSTSKTGKHGHAKCHFV IDIF 
Sbjct: 16  FEA-SESGASKTYPQSAGNIRKGGHIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFT 74
Query: 68  GKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQI 127
            KKLEDIVPSSHNCDVPHV R DYQLIDI+EDGFVSLLT++G TKDDL+LPTD+ L +Q+
Sbjct: 75  AKKLEDIVPSSHNCDVPHVNRVDYQLIDITEDGFVSLLTDSGGTKDDLKLPTDDGLTAQM 134
Query: 128 KDGFESGKDLVVSVQCAMGEEQINALKDIG 157
           + GF+ GKD+VVSV  +MGEEQI A+K++G
Sbjct: 135 RLGFDEGKDIVVSVMSSMGEEQICAVKEVG 164
>pdb|3ER0|A Chain A, Crystal Structure Of The Full Length Eif5a From Saccharomyces Cerevisiae Length = 167 Back     alignment and structure
>pdb|3CPF|A Chain A, Crystal Structure Of Human Eukaryotic Translation Initiation Factor Eif5a Length = 138 Back     alignment and structure
>pdb|1X6O|A Chain A, Structural Analysis Of Leishmania Braziliensis Eukaryotic Initiation Factor 5a Length = 174 Back     alignment and structure
>pdb|1XTD|A Chain A, Structural Analysis Of Leishmania Mexicana Eukaryotic Initiation Factor 5a Length = 174 Back     alignment and structure
>pdb|2EIF|A Chain A, Eukaryotic Translation Initiation Factor 5a From Methanococcus Jannaschii Length = 136 Back     alignment and structure
>pdb|1EIF|A Chain A, Eukaryotic Translation Initiation Factor 5a From Methanococcus Jannaschii Length = 135 Back     alignment and structure
>pdb|1BKB|A Chain A, Initiation Factor 5a From Archebacterium Pyrobaculum Aerophilum Length = 136 Back     alignment and structure
>pdb|1IZ6|A Chain A, Crystal Structure Of Translation Initiation Factor 5a From Pyrococcus Horikoshii Length = 138 Back     alignment and structure
>pdb|1KHI|A Chain A, Crystal Structure Of Hex1 Length = 176 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query159
3hks_A167 EIF-5A-2, eukaryotic translation initiation factor 3e-69
1x6o_A174 Eukaryotic initiation factor 5A; SGPP, structural 2e-65
3er0_A167 Eukaryotic translation initiation factor 5A-2; yea 5e-58
1khi_A176 HEX1; membrane sealing, peroxisomal target, struct 4e-57
3cpf_A138 Eukaryotic translation initiation factor 5A-1; str 2e-55
1iz6_A138 Initiation factor 5A; SH3-like barrel, OB fold, bi 3e-52
1bkb_A136 Translation initiation factor 5A; 1.75A {Pyrobacul 1e-46
2eif_A136 IF-5A, protein (eukaryotic translation initiation 4e-45
>3hks_A EIF-5A-2, eukaryotic translation initiation factor 5A-2; beta barrel, alternative splicing, hypusine, protein biosynthesis; 2.30A {Arabidopsis thaliana} Length = 167 Back     alignment and structure
 Score =  206 bits (524), Expect = 3e-69
 Identities = 118/157 (75%), Positives = 139/157 (88%), Gaps = 1/157 (0%)

Query: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSD+EHHFE+ +++GASKT+PQ AG IRK G+IVIK RPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 9   MSDDEHHFEA-SESGASKTYPQSAGNIRKGGHIVIKNRPCKVVEVSTSKTGKHGHAKCHF 67

Query: 61  VGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120
           V IDIF  KKLEDIVPSSHNCDVPHV R DYQLIDI+EDGFVSLLT++G TKDDL+LPTD
Sbjct: 68  VAIDIFTAKKLEDIVPSSHNCDVPHVNRVDYQLIDITEDGFVSLLTDSGGTKDDLKLPTD 127

Query: 121 ENLLSQIKDGFESGKDLVVSVQCAMGEEQINALKDIG 157
           + L +Q++ GF+ GKD+VVSV  +MGEEQI A+K++G
Sbjct: 128 DGLTAQMRLGFDEGKDIVVSVMSSMGEEQICAVKEVG 164
>1x6o_A Eukaryotic initiation factor 5A; SGPP, structural genomics, PSI; 1.60A {Leishmania braziliensis} SCOP: b.34.5.2 b.40.4.5 PDB: 1xtd_A Length = 174 Back     alignment and structure
>3er0_A Eukaryotic translation initiation factor 5A-2; yeast, low resolution, acetylation, hypusine, phosphoprotein, protein biosynthesis; 3.35A {Saccharomyces cerevisiae} Length = 167 Back     alignment and structure
>1khi_A HEX1; membrane sealing, peroxisomal target, structural protein; 1.78A {Neurospora crassa} SCOP: b.34.5.2 b.40.4.5 Length = 176 Back     alignment and structure
>3cpf_A Eukaryotic translation initiation factor 5A-1; structural genomics consortium, leukemia, apoptosis, SGC, HY initiation factor, nucleus; 2.50A {Homo sapiens} Length = 138 Back     alignment and structure
>1iz6_A Initiation factor 5A; SH3-like barrel, OB fold, biosynthetic protein; 2.00A {Pyrococcus horikoshii} SCOP: b.34.5.2 b.40.4.5 Length = 138 Back     alignment and structure
>1bkb_A Translation initiation factor 5A; 1.75A {Pyrobaculum aerophilum} SCOP: b.34.5.2 b.40.4.5 Length = 136 Back     alignment and structure
>2eif_A IF-5A, protein (eukaryotic translation initiation factor; EIF-5A, OB-fold, structural genomics, BSGC STRU funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: b.34.5.2 b.40.4.5 PDB: 1eif_A Length = 136 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query159
3hks_A167 EIF-5A-2, eukaryotic translation initiation factor 100.0
1x6o_A174 Eukaryotic initiation factor 5A; SGPP, structural 100.0
3er0_A167 Eukaryotic translation initiation factor 5A-2; yea 100.0
3cpf_A138 Eukaryotic translation initiation factor 5A-1; str 100.0
1iz6_A138 Initiation factor 5A; SH3-like barrel, OB fold, bi 100.0
1bkb_A136 Translation initiation factor 5A; 1.75A {Pyrobacul 100.0
2eif_A136 IF-5A, protein (eukaryotic translation initiation 100.0
3a5z_B191 EF-P, elongation factor P; aminoacyl-tRNA syntheta 100.0
1ueb_A184 EF-P, TT0860, elongation factor P; beta barrel, ri 100.0
3tre_A191 EF-P, elongation factor P; protein synthesis, tran 100.0
1yby_A215 Translation elongation factor P; conserved hypothe 100.0
3oyy_A191 EF-P, elongation factor P; translation; 1.75A {Pse 100.0
1khi_A176 HEX1; membrane sealing, peroxisomal target, struct 100.0
3r8s_P114 50S ribosomal protein L19; protein biosynthesis, R 80.38
>3hks_A EIF-5A-2, eukaryotic translation initiation factor 5A-2; beta barrel, alternative splicing, hypusine, protein biosynthesis; 2.30A {Arabidopsis thaliana} Back     alignment and structure
Probab=100.00  E-value=1.3e-55  Score=344.74  Aligned_cols=156  Identities=75%  Similarity=1.197  Sum_probs=136.4

Q ss_pred             CCccccccccccCCCcceeeEEeccccCCceEEEEcCeEEEEEEeeeecCCCCCceEEEEEEEECCCCcEEEEEEeCCCc
Q 031432            1 MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHN   80 (159)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~t~~i~~~~ikkG~~i~~~g~p~~Vve~~~~kpGKhG~a~vr~k~knl~TG~~~E~t~~s~~~   80 (159)
                      |||-+|+|+ +++|++|.|+||++++||+|++|+++|+||+|++++|+||||||+||+|+++|||+||+++|.+|+|+++
T Consensus         9 ~~~~~~~~~-~~~~gas~t~pi~~~dlrkG~~I~idG~P~~Vve~~~~KpGKhG~A~vr~k~knl~TGk~~E~tf~s~~k   87 (167)
T 3hks_A            9 MSDDEHHFE-ASESGASKTYPQSAGNIRKGGHIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTAKKLEDIVPSSHN   87 (167)
T ss_dssp             ----------------CCEEEEEGGGCCTTSEEEETTEEEEEEEEEEECSSTTCCCEEEEEEEETTTCCEEEEEEETTSE
T ss_pred             cCccccccc-ccCCCCCccEEEEHHHccCCCEEEECCEEEEEEEEEEeCCCCCCceEEEEEEEEcCCCCEEEEEEcCCCE
Confidence            789889999 9999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eecceEEeeeEEEEEeeCCCcEEEecCCCCeeeeccCCchh-hHHHHHHhhccCCCeEEEEEEeeCCEEEEEEEeccCC
Q 031432           81 CDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDE-NLLSQIKDGFESGKDLVVSVQCAMGEEQINALKDIGP  158 (159)
Q Consensus        81 ve~~~v~~~~~qyly~d~~~~~~fMD~etyeq~~i~l~~~~-~l~~~~~~~l~eg~~v~V~~~~~~G~e~v~~~k~~~~  158 (159)
                      +++|.|++++|||||+|+|+.|+|||++||+|++|+||+ + +|+++++.||++|++|.|++|++||+|+|+++|++++
T Consensus        88 ve~~~ver~~~QyLY~d~d~~~~fMD~etyeQ~~l~lp~-~~~lg~~i~~~l~eG~~v~V~v~~~mg~e~i~~~k~~~~  165 (167)
T 3hks_A           88 CDVPHVNRVDYQLIDITEDGFVSLLTDSGGTKDDLKLPT-DDGLTAQMRLGFDEGKDIVVSVMSSMGEEQICAVKEVGG  165 (167)
T ss_dssp             EEEECCEEEEEEEEEECTTSBEEEECTTSCEECCCBCCS-CHHHHHHHHHHHHTTEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEeeeEEEEEEEEEEECCCCEEEEEcCCCceEEEEecCc-hHHHHHHHHHHhhCCCEEEEEEEeeCCeEEEEEEEecCC
Confidence            999999999999999975679999999999999999998 6 9999999999999999999999999999999998653
>1x6o_A Eukaryotic initiation factor 5A; SGPP, structural genomics, PSI; 1.60A {Leishmania braziliensis} SCOP: b.34.5.2 b.40.4.5 PDB: 1xtd_A Back     alignment and structure
>3er0_A Eukaryotic translation initiation factor 5A-2; yeast, low resolution, acetylation, hypusine, phosphoprotein, protein biosynthesis; 3.35A {Saccharomyces cerevisiae} Back     alignment and structure
>3cpf_A Eukaryotic translation initiation factor 5A-1; structural genomics consortium, leukemia, apoptosis, SGC, HY initiation factor, nucleus; 2.50A {Homo sapiens} Back     alignment and structure
>1iz6_A Initiation factor 5A; SH3-like barrel, OB fold, biosynthetic protein; 2.00A {Pyrococcus horikoshii} SCOP: b.34.5.2 b.40.4.5 Back     alignment and structure
>1bkb_A Translation initiation factor 5A; 1.75A {Pyrobaculum aerophilum} SCOP: b.34.5.2 b.40.4.5 Back     alignment and structure
>2eif_A IF-5A, protein (eukaryotic translation initiation factor; EIF-5A, OB-fold, structural genomics, BSGC STRU funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: b.34.5.2 b.40.4.5 PDB: 1eif_A Back     alignment and structure
>3a5z_B EF-P, elongation factor P; aminoacyl-tRNA synthetase paralog, translation, tRNA, lysyl- synthetase, structural genomics, NPPSFA; HET: KAA; 2.50A {Escherichia coli} Back     alignment and structure
>1ueb_A EF-P, TT0860, elongation factor P; beta barrel, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.65A {Thermus thermophilus} SCOP: b.34.5.2 b.40.4.5 b.40.4.5 PDB: 3huw_V 3huy_V Back     alignment and structure
>3tre_A EF-P, elongation factor P; protein synthesis, translation; 2.90A {Coxiella burnetii} Back     alignment and structure
>1yby_A Translation elongation factor P; conserved hypothetical protein, structural genomics, PSI, protein structure initiative; 1.95A {Clostridium thermocellum} Back     alignment and structure
>3oyy_A EF-P, elongation factor P; translation; 1.75A {Pseudomonas aeruginosa} Back     alignment and structure
>1khi_A HEX1; membrane sealing, peroxisomal target, structural protein; 1.78A {Neurospora crassa} SCOP: b.34.5.2 b.40.4.5 Back     alignment and structure
>3r8s_P 50S ribosomal protein L19; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_N 1p86_N 2awb_P 2gya_N 2gyc_N 2aw4_P 2i2v_P 2j28_P 2i2t_P* 2qao_P* 2qba_P* 2qbc_P* 2qbe_P 2qbg_P 2qbi_P* 2qbk_P* 2qov_P 2qox_P 2qoz_P* 2qp1_P* ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 159
d1x6oa168 b.34.5.2 (A:19-86) Eukaryotic initiation translati 5e-36
d1x6oa279 b.40.4.5 (A:87-165) C-terminal domain of eukaryoti 4e-32
d1khia176 b.34.5.2 (A:27-102) Woronin body major protein (He 1e-28
d1khia271 b.40.4.5 (A:103-173) C-terminal domain of eIF5a ho 2e-25
d2eifa173 b.34.5.2 (A:1-73) Eukaryotic initiation translatio 3e-24
d1bkba171 b.34.5.2 (A:4-74) Eukaryotic initiation translatio 3e-22
d1iz6a169 b.34.5.2 (A:2-70) Eukaryotic initiation translatio 5e-22
>d1x6oa1 b.34.5.2 (A:19-86) Eukaryotic initiation translation factor 5a (eIF5a) {Leishmania infantum [TaxId: 5671]} Length = 68 Back     information, alignment and structure

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: eIF5a N-terminal domain-like
domain: Eukaryotic initiation translation factor 5a (eIF5a)
species: Leishmania infantum [TaxId: 5671]

 Score =  117 bits (294), Expect = 5e-36
 Identities = 40/67 (59%), Positives = 50/67 (74%)

Query: 18 KTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPS 77
          KT+P  AG ++K GY+ I GRPCKV+++S SKTGKHGHAK   V  DIF G +LED  PS
Sbjct: 1  KTYPLAAGALKKGGYVCINGRPCKVIDLSVSKTGKHGHAKVSIVATDIFTGNRLEDQAPS 60

Query: 78 SHNCDVP 84
          +HN +VP
Sbjct: 61 THNVEVP 67
>d1x6oa2 b.40.4.5 (A:87-165) C-terminal domain of eukaryotic initiation translation factor 5a (eIF5a) {Leishmania infantum [TaxId: 5671]} Length = 79 Back     information, alignment and structure
>d1khia1 b.34.5.2 (A:27-102) Woronin body major protein (Hex1) {Filamentous fungi (Neurospora crassa) [TaxId: 5141]} Length = 76 Back     information, alignment and structure
>d1khia2 b.40.4.5 (A:103-173) C-terminal domain of eIF5a homologue (Hex1) {Filamentous fungi (Neurospora crassa) [TaxId: 5141]} Length = 71 Back     information, alignment and structure
>d2eifa1 b.34.5.2 (A:1-73) Eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 73 Back     information, alignment and structure
>d1bkba1 b.34.5.2 (A:4-74) Eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 71 Back     information, alignment and structure
>d1iz6a1 b.34.5.2 (A:2-70) Eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 69 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query159
d2eifa173 Eukaryotic initiation translation factor 5a (eIF5a 99.93
d1bkba171 Eukaryotic initiation translation factor 5a (eIF5a 99.93
d1iz6a169 Eukaryotic initiation translation factor 5a (eIF5a 99.92
d1x6oa168 Eukaryotic initiation translation factor 5a (eIF5a 99.9
d1ueba163 Elongation factor P N-terminal domain {Thermus the 99.88
d1khia176 Woronin body major protein (Hex1) {Filamentous fun 99.8
d1x6oa279 C-terminal domain of eukaryotic initiation transla 99.52
d1ueba263 Elongation factor P middle and C-terminal domains 99.5
d1khia271 C-terminal domain of eIF5a homologue (Hex1) {Filam 99.47
d1iz6a267 C-terminal domain of eukaryotic initiation transla 99.02
d1bkba265 C-terminal domain of eukaryotic initiation transla 98.88
d2eifa259 C-terminal domain of eukaryotic initiation transla 98.86
>d2eifa1 b.34.5.2 (A:1-73) Eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: eIF5a N-terminal domain-like
domain: Eukaryotic initiation translation factor 5a (eIF5a)
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.93  E-value=6.4e-26  Score=153.59  Aligned_cols=70  Identities=40%  Similarity=0.704  Sum_probs=67.3

Q ss_pred             cceeeEEeccccCCceEEEEcCeEEEEEEeeeecCCCCCceEEEEEEEECCCCcEEEEEEeCCCceecce
Q 031432           16 ASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPH   85 (159)
Q Consensus        16 ~~~t~~i~~~~ikkG~~i~~~g~p~~Vve~~~~kpGKhG~a~vr~k~knl~TG~~~E~t~~s~~~ve~~~   85 (159)
                      ...|.+|++++||+|++|+++|+||+|++++|++|||||+|++|++++||+||+++|.+|+++|++|+|.
T Consensus         4 m~~~~~i~~~~lKkG~~i~~~g~p~~V~e~~~~kpGk~G~A~~r~k~kni~tG~~~e~~~~s~d~vevPi   73 (73)
T d2eifa1           4 MPGTKQVNVGSLKVGQYVMIDGVPCEIVDISVSKPGKHGGAKARVVGIGIFEKVKKEFVAPTSSKVEVPI   73 (73)
T ss_dssp             CSSEEEEEGGGCCTTSEEEETTEEEEEEEEEECCCCSSSCCEEEEEEEESSSCCEEEEEEETTSEEEEEC
T ss_pred             eccceEEEHHHccCCCEEEECCEEEEEEEEEEECCCCcccEEEEEEEEEEecCcEEEEEEcCCCEEeccC
Confidence            3568999999999999999999999999999999999999999999999999999999999999999984
>d1bkba1 b.34.5.2 (A:4-74) Eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Back     information, alignment and structure
>d1iz6a1 b.34.5.2 (A:2-70) Eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1x6oa1 b.34.5.2 (A:19-86) Eukaryotic initiation translation factor 5a (eIF5a) {Leishmania infantum [TaxId: 5671]} Back     information, alignment and structure
>d1ueba1 b.34.5.2 (A:1-63) Elongation factor P N-terminal domain {Thermus thermophilus HB8 [TaxId: 300852]} Back     information, alignment and structure
>d1khia1 b.34.5.2 (A:27-102) Woronin body major protein (Hex1) {Filamentous fungi (Neurospora crassa) [TaxId: 5141]} Back     information, alignment and structure
>d1x6oa2 b.40.4.5 (A:87-165) C-terminal domain of eukaryotic initiation translation factor 5a (eIF5a) {Leishmania infantum [TaxId: 5671]} Back     information, alignment and structure
>d1ueba2 b.40.4.5 (A:64-126) Elongation factor P middle and C-terminal domains {Thermus thermophilus HB8 [TaxId: 300852]} Back     information, alignment and structure
>d1khia2 b.40.4.5 (A:103-173) C-terminal domain of eIF5a homologue (Hex1) {Filamentous fungi (Neurospora crassa) [TaxId: 5141]} Back     information, alignment and structure
>d1iz6a2 b.40.4.5 (A:71-137) C-terminal domain of eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1bkba2 b.40.4.5 (A:75-139) C-terminal domain of eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Back     information, alignment and structure
>d2eifa2 b.40.4.5 (A:74-132) C-terminal domain of eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure