Citrus Sinensis ID: 031433
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 159 | 2.2.26 [Sep-21-2011] | |||||||
| Q2HFP1 | 397 | ATP-dependent RNA helicas | N/A | no | 0.515 | 0.206 | 0.272 | 2e-05 | |
| A7TK55 | 396 | ATP-dependent RNA helicas | N/A | no | 0.515 | 0.207 | 0.281 | 3e-05 | |
| A4QVP2 | 396 | ATP-dependent RNA helicas | N/A | no | 0.515 | 0.207 | 0.263 | 6e-05 | |
| Q7RV88 | 397 | ATP-dependent RNA helicas | N/A | no | 0.515 | 0.206 | 0.263 | 7e-05 | |
| Q0CXD0 | 396 | ATP-dependent RNA helicas | N/A | no | 0.515 | 0.207 | 0.254 | 7e-05 | |
| A6RJ45 | 398 | ATP-dependent RNA helicas | N/A | no | 0.515 | 0.206 | 0.263 | 8e-05 | |
| A7EGL7 | 398 | ATP-dependent RNA helicas | N/A | no | 0.515 | 0.206 | 0.263 | 8e-05 | |
| P0CQ70 | 401 | ATP-dependent RNA helicas | yes | no | 0.515 | 0.204 | 0.272 | 9e-05 | |
| P0CQ71 | 401 | ATP-dependent RNA helicas | N/A | no | 0.515 | 0.204 | 0.272 | 9e-05 | |
| O02494 | 405 | Eukaryotic initiation fac | yes | no | 0.534 | 0.209 | 0.256 | 9e-05 |
| >sp|Q2HFP1|IF4A_CHAGB ATP-dependent RNA helicase eIF4A OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) GN=TIF1 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 54/110 (49%), Gaps = 28/110 (25%)
Query: 29 IVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSG 88
++ C++R ++D + + D + S++H D+ +T+R LI++EFR SG
Sbjct: 267 VIFCNTRRKVDWLTDKL-QARDFTVSAMHGDMDQTQRDLIMKEFR-------------SG 312
Query: 89 DESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYI 138
S +++ TD LL+ G ++INY+LP +E YI
Sbjct: 313 ----------SSRVLIATD----LLARGIDVQQVSLVINYDLPANRENYI 348
|
ATP-dependent RNA helicase which is a subunit of the eIF4F complex involved in cap recognition and is required for mRNA binding to ribosome. In the current model of translation initiation, eIF4A unwinds RNA secondary structures in the 5'-UTR of mRNAs which is necessary to allow efficient binding of the small ribosomal subunit, and subsequent scanning for the initiator codon. Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) (taxid: 306901) EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 1EC: 3 |
| >sp|A7TK55|IF4A_VANPO ATP-dependent RNA helicase eIF4A OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=TIF1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 57/110 (51%), Gaps = 28/110 (25%)
Query: 29 IVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSG 88
++ C++R +++ + ++ ++ + SS++SDL + ER +I++EFR SG
Sbjct: 265 VIFCNTRRKVEELTQKLTE-SNFTVSSIYSDLPQQERDVIMKEFR-------------SG 310
Query: 89 DESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYI 138
S +++ TD LL+ G ++INY+LPT KE YI
Sbjct: 311 ----------SSRILISTD----LLARGIDVQQVSLVINYDLPTNKENYI 346
|
ATP-dependent RNA helicase which is a subunit of the eIF4F complex involved in cap recognition and is required for mRNA binding to ribosome. In the current model of translation initiation, eIF4A unwinds RNA secondary structures in the 5'-UTR of mRNAs which is necessary to allow efficient binding of the small ribosomal subunit, and subsequent scanning for the initiator codon. Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) (taxid: 436907) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|A4QVP2|IF4A_MAGO7 ATP-dependent RNA helicase eIF4A OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=TIF1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 54/110 (49%), Gaps = 28/110 (25%)
Query: 29 IVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSG 88
++ C++R ++D + ++ D + S++H D+ + +R LI++EFR SG
Sbjct: 266 VIFCNTRRKVDWLTDKLTA-RDFTVSAMHGDMDQAQRDLIMKEFR-------------SG 311
Query: 89 DESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYI 138
S +++ TD LL+ G ++INY+LP +E YI
Sbjct: 312 ----------SSRVLIATD----LLARGIDVQQVSLVINYDLPANRENYI 347
|
ATP-dependent RNA helicase which is a subunit of the eIF4F complex involved in cap recognition and is required for mRNA binding to ribosome. In the current model of translation initiation, eIF4A unwinds RNA secondary structures in the 5'-UTR of mRNAs which is necessary to allow efficient binding of the small ribosomal subunit, and subsequent scanning for the initiator codon. Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) (taxid: 242507) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|Q7RV88|IF4A_NEUCR ATP-dependent RNA helicase eIF4A OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=tif-1 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 54/110 (49%), Gaps = 28/110 (25%)
Query: 29 IVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSG 88
++ C++R ++D + ++ D + S++H D+ + +R LI++EFR SG
Sbjct: 267 VIFCNTRRKVDWLTDKLTA-RDFTVSAMHGDMDQAQRDLIMKEFR-------------SG 312
Query: 89 DESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYI 138
S +++ TD LL+ G ++INY+LP +E YI
Sbjct: 313 ----------SSRVLIATD----LLARGIDVQQVSLVINYDLPANRENYI 348
|
ATP-dependent RNA helicase which is a subunit of the eIF4F complex involved in cap recognition and is required for mRNA binding to ribosome. In the current model of translation initiation, eIF4A unwinds RNA secondary structures in the 5'-UTR of mRNAs which is necessary to allow efficient binding of the small ribosomal subunit, and subsequent scanning for the initiator codon. Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|Q0CXD0|IF4A_ASPTN ATP-dependent RNA helicase eIF4A OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=tif1 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 55/110 (50%), Gaps = 28/110 (25%)
Query: 29 IVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSG 88
++ C++R ++D + ++ D + S++H D+ +++R +I++EFR SG
Sbjct: 266 VIFCNTRRKVDWLTDKLTA-RDFTVSAMHGDMEQSQRDIIMKEFR-------------SG 311
Query: 89 DESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYI 138
S +++ TD LL+ G ++INY+LP +E YI
Sbjct: 312 ----------SSRVLIATD----LLARGIDVQQVSLVINYDLPANRENYI 347
|
ATP-dependent RNA helicase which is a subunit of the eIF4F complex involved in cap recognition and is required for mRNA binding to ribosome. In the current model of translation initiation, eIF4A unwinds RNA secondary structures in the 5'-UTR of mRNAs which is necessary to allow efficient binding of the small ribosomal subunit, and subsequent scanning for the initiator codon. Aspergillus terreus (strain NIH 2624 / FGSC A1156) (taxid: 341663) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|A6RJ45|IF4A_BOTFB ATP-dependent RNA helicase eIF4A OS=Botryotinia fuckeliana (strain B05.10) GN=tif1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 54/110 (49%), Gaps = 28/110 (25%)
Query: 29 IVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSG 88
++ C++R ++D + ++ D + S++H D+ + +R LI++EFR SG
Sbjct: 268 VIFCNTRRKVDWLTDKLTA-RDFTVSAMHGDMDQGQRDLIMKEFR-------------SG 313
Query: 89 DESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYI 138
S +++ TD LL+ G ++INY+LP +E YI
Sbjct: 314 ----------SSRVLIATD----LLARGIDVQQVSLVINYDLPANRENYI 349
|
ATP-dependent RNA helicase which is a subunit of the eIF4F complex involved in cap recognition and is required for mRNA binding to ribosome. In the current model of translation initiation, eIF4A unwinds RNA secondary structures in the 5'-UTR of mRNAs which is necessary to allow efficient binding of the small ribosomal subunit, and subsequent scanning for the initiator codon. Botryotinia fuckeliana (strain B05.10) (taxid: 332648) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|A7EGL7|IF4A_SCLS1 ATP-dependent RNA helicase eIF4A OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=tif1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 54/110 (49%), Gaps = 28/110 (25%)
Query: 29 IVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSG 88
++ C++R ++D + ++ D + S++H D+ + +R LI++EFR SG
Sbjct: 268 VIFCNTRRKVDWLTDKLTA-RDFTVSAMHGDMDQGQRDLIMKEFR-------------SG 313
Query: 89 DESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYI 138
S +++ TD LL+ G ++INY+LP +E YI
Sbjct: 314 ----------SSRVLIATD----LLARGIDVQQVSLVINYDLPANRENYI 349
|
ATP-dependent RNA helicase which is a subunit of the eIF4F complex involved in cap recognition and is required for mRNA binding to ribosome. In the current model of translation initiation, eIF4A unwinds RNA secondary structures in the 5'-UTR of mRNAs which is necessary to allow efficient binding of the small ribosomal subunit, and subsequent scanning for the initiator codon. Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) (taxid: 665079) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|P0CQ70|IF4A_CRYNJ ATP-dependent RNA helicase eIF4A OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=TIF1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 46.2 bits (108), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 54/110 (49%), Gaps = 28/110 (25%)
Query: 29 IVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSG 88
++ CS+R ++D + + + + S++H D+ + ER +I++EFR SG
Sbjct: 271 VIFCSTRRKVDWLTQQLHD-RQFTVSAMHGDMKQEEREVIMKEFR-------------SG 316
Query: 89 DESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYI 138
S +++ TD LL+ G ++INY+LP+ KE YI
Sbjct: 317 ----------SSRVLITTD----LLARGIDVQQVSLVINYDLPSSKENYI 352
|
ATP-dependent RNA helicase which is a subunit of the eIF4F complex involved in cap recognition and is required for mRNA binding to ribosome. In the current model of translation initiation, eIF4A unwinds RNA secondary structures in the 5'-UTR of mRNAs which is necessary to allow efficient binding of the small ribosomal subunit, and subsequent scanning for the initiator codon. Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) (taxid: 214684) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|P0CQ71|IF4A_CRYNB ATP-dependent RNA helicase eIF4A OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=TIF1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 46.2 bits (108), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 54/110 (49%), Gaps = 28/110 (25%)
Query: 29 IVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSG 88
++ CS+R ++D + + + + S++H D+ + ER +I++EFR SG
Sbjct: 271 VIFCSTRRKVDWLTQQLHD-RQFTVSAMHGDMKQEEREVIMKEFR-------------SG 316
Query: 89 DESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYI 138
S +++ TD LL+ G ++INY+LP+ KE YI
Sbjct: 317 ----------SSRVLITTD----LLARGIDVQQVSLVINYDLPSSKENYI 352
|
ATP-dependent RNA helicase which is a subunit of the eIF4F complex involved in cap recognition and is required for mRNA binding to ribosome. In the current model of translation initiation, eIF4A unwinds RNA secondary structures in the 5'-UTR of mRNAs which is necessary to allow efficient binding of the small ribosomal subunit, and subsequent scanning for the initiator codon. Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) (taxid: 283643) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|O02494|IF4A_CRYPV Eukaryotic initiation factor 4A OS=Cryptosporidium parvum GN=EIF4-A PE=2 SV=1 | Back alignment and function description |
|---|
Score = 46.2 bits (108), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 28/113 (24%)
Query: 29 IVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSG 88
I+ C++R +D + + D + SS+H D+ + +R +I+ +FR +
Sbjct: 274 IIYCNTRRRVDQLTKQMRE-RDFTCSSMHGDMDQKDREVIMRQFRSGS------------ 320
Query: 89 DESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRM 141
S +++ TD LL+ G ++INY+LP ETYI R+
Sbjct: 321 -----------SRVLITTD----LLARGIDVQQVSLVINYDLPVSPETYIHRI 358
|
ATP-dependent RNA helicase which is a subunit of the eIF4F complex involved in cap recognition and is required for mRNA binding to ribosome. In the current model of translation initiation, eIF4A unwinds RNA secondary structures in the 5'-UTR of mRNAs which is necessary to allow efficient binding of the small ribosomal subunit, and subsequent scanning for the initiator codon. Cryptosporidium parvum (taxid: 5807) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 159 | ||||||
| 255565156 | 207 | conserved hypothetical protein [Ricinus | 0.855 | 0.657 | 0.755 | 4e-53 | |
| 225438690 | 210 | PREDICTED: eukaryotic initiation factor | 0.855 | 0.647 | 0.712 | 3e-48 | |
| 449448326 | 233 | PREDICTED: ATP-dependent RNA helicase eI | 0.861 | 0.587 | 0.697 | 7e-48 | |
| 449448328 | 211 | PREDICTED: ATP-dependent RNA helicase eI | 0.861 | 0.649 | 0.697 | 1e-47 | |
| 449448332 | 208 | PREDICTED: ATP-dependent RNA helicase eI | 0.893 | 0.682 | 0.677 | 1e-47 | |
| 4006874 | 225 | putative protein [Arabidopsis thaliana] | 0.867 | 0.613 | 0.650 | 9e-41 | |
| 18419954 | 212 | uncharacterized protein [Arabidopsis tha | 0.867 | 0.650 | 0.650 | 1e-40 | |
| 334187233 | 258 | uncharacterized protein [Arabidopsis tha | 0.867 | 0.534 | 0.650 | 1e-40 | |
| 224094352 | 231 | predicted protein [Populus trichocarpa] | 0.911 | 0.627 | 0.571 | 2e-40 | |
| 356496882 | 209 | PREDICTED: eukaryotic initiation factor | 0.855 | 0.650 | 0.575 | 2e-39 |
| >gi|255565156|ref|XP_002523570.1| conserved hypothetical protein [Ricinus communis] gi|223537132|gb|EEF38765.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 212 bits (539), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 105/139 (75%), Positives = 117/139 (84%), Gaps = 3/139 (2%)
Query: 9 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLI 68
ETLVELL VAGRR GLPM+VCCSSRDELDAVCS VSNL ISF+SL+SDLAE ERT +
Sbjct: 34 ETLVELLG--VAGRRSGLPMVVCCSSRDELDAVCSVVSNLPYISFASLYSDLAEAERTSV 91
Query: 69 LEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINY 128
LE+FR M+WNQ +T QSG++ E K E KSHMIVVTD CLPLL+SGES ISARVLINY
Sbjct: 92 LEKFRQVTMRWNQNITAQSGNKDEIEK-EDKSHMIVVTDTCLPLLASGESPISARVLINY 150
Query: 129 ELPTKKETYIRRMTTCLAA 147
ELPTKKETY RRM++CLAA
Sbjct: 151 ELPTKKETYARRMSSCLAA 169
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225438690|ref|XP_002277554.1| PREDICTED: eukaryotic initiation factor 4A [Vitis vinifera] gi|296082429|emb|CBI21434.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 196 bits (498), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 99/139 (71%), Positives = 111/139 (79%), Gaps = 3/139 (2%)
Query: 9 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLI 68
ETLV+LL L A RP LP+ VCCSSRDELDAVCSAVSNL IS +SL+SDLAE ER LI
Sbjct: 37 ETLVDLLEL--ASHRPCLPIAVCCSSRDELDAVCSAVSNLPFISLASLYSDLAEAERALI 94
Query: 69 LEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINY 128
LE FR M++ Q V QSG++ E K E KSHM+VVTDACLP L+SGES+ISARVLINY
Sbjct: 95 LENFRQATMRY-QNVIAQSGEDKEIKKGEDKSHMVVVTDACLPFLASGESSISARVLINY 153
Query: 129 ELPTKKETYIRRMTTCLAA 147
ELPTKKETY+RRM TCL A
Sbjct: 154 ELPTKKETYMRRMATCLGA 172
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449448326|ref|XP_004141917.1| PREDICTED: ATP-dependent RNA helicase eIF4A-like isoform 1 [Cucumis sativus] gi|449530827|ref|XP_004172393.1| PREDICTED: ATP-dependent RNA helicase eIF4A-like isoform 1 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 194 bits (494), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 97/139 (69%), Positives = 114/139 (82%), Gaps = 2/139 (1%)
Query: 9 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLI 68
ETLV LL VAGRRP LPM+VCCSSRDELD+VCSAVSNL IS +SL+SDLAE +R+LI
Sbjct: 37 ETLVGLLD--VAGRRPSLPMVVCCSSRDELDSVCSAVSNLHYISLASLYSDLAEADRSLI 94
Query: 69 LEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINY 128
LE+FR T +W+QK + S ++ E K KSHMIVVTDACLPLL+SGES +SA VLINY
Sbjct: 95 LEKFRQTTSRWSQKFSSLSEEKCEAEKVGEKSHMIVVTDACLPLLASGESPLSAHVLINY 154
Query: 129 ELPTKKETYIRRMTTCLAA 147
E+PTKKETY+RRMTTC A+
Sbjct: 155 EIPTKKETYMRRMTTCSAS 173
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449448328|ref|XP_004141918.1| PREDICTED: ATP-dependent RNA helicase eIF4A-like isoform 2 [Cucumis sativus] gi|449448330|ref|XP_004141919.1| PREDICTED: ATP-dependent RNA helicase eIF4A-like isoform 3 [Cucumis sativus] gi|449530829|ref|XP_004172394.1| PREDICTED: ATP-dependent RNA helicase eIF4A-like isoform 2 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 194 bits (493), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 97/139 (69%), Positives = 114/139 (82%), Gaps = 2/139 (1%)
Query: 9 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLI 68
ETLV LL VAGRRP LPM+VCCSSRDELD+VCSAVSNL IS +SL+SDLAE +R+LI
Sbjct: 37 ETLVGLLD--VAGRRPSLPMVVCCSSRDELDSVCSAVSNLHYISLASLYSDLAEADRSLI 94
Query: 69 LEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINY 128
LE+FR T +W+QK + S ++ E K KSHMIVVTDACLPLL+SGES +SA VLINY
Sbjct: 95 LEKFRQTTSRWSQKFSSLSEEKCEAEKVGEKSHMIVVTDACLPLLASGESPLSAHVLINY 154
Query: 129 ELPTKKETYIRRMTTCLAA 147
E+PTKKETY+RRMTTC A+
Sbjct: 155 EIPTKKETYMRRMTTCSAS 173
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449448332|ref|XP_004141920.1| PREDICTED: ATP-dependent RNA helicase eIF4A-like isoform 4 [Cucumis sativus] gi|449530831|ref|XP_004172395.1| PREDICTED: ATP-dependent RNA helicase eIF4A-like isoform 3 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 194 bits (492), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 101/149 (67%), Positives = 118/149 (79%), Gaps = 7/149 (4%)
Query: 9 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLI 68
ETLV LL VAGRRP LPM+VCCSSRDELD+VCSAVSNL IS +SL+SDLAE +R+LI
Sbjct: 37 ETLVGLLD--VAGRRPSLPMVVCCSSRDELDSVCSAVSNLHYISLASLYSDLAEADRSLI 94
Query: 69 LEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINY 128
LE+FR T +W+QK + S ++ E K KSHMIVVTDACLPLL+SGES +SA VLINY
Sbjct: 95 LEKFRQTTSRWSQKFSSLSEEKCEAEKVGEKSHMIVVTDACLPLLASGESPLSAHVLINY 154
Query: 129 ELPTKKETYIRRMTTCLAAGTSFSDIILL 157
E+PTKKETY+RRMTTC S SD IL+
Sbjct: 155 EIPTKKETYMRRMTTC-----SASDGILI 178
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|4006874|emb|CAB16792.1| putative protein [Arabidopsis thaliana] gi|7270651|emb|CAB80368.1| putative protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 171 bits (433), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 93/143 (65%), Positives = 117/143 (81%), Gaps = 5/143 (3%)
Query: 9 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLI 68
ET+VELL V GRRP LP++VCCSSRDELDAVCS++S L IS ++L+SDLA+ ER ++
Sbjct: 2 ETVVELLG--VLGRRPWLPIVVCCSSRDELDAVCSSLSTLPYISLAALYSDLADRERAMV 59
Query: 69 LEEFRHTAMKWNQK---VTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVL 125
+E+FR + WNQ+ V E+ +ESE GK+E SH++VVTD CLPLLSSGES++SARVL
Sbjct: 60 IEKFRQATINWNQQLNSVVEEGLEESENGKEEKTSHLVVVTDVCLPLLSSGESSLSARVL 119
Query: 126 INYELPTKKETYIRRMTTCLAAG 148
INYELPTKKETY RR+TTCLA+G
Sbjct: 120 INYELPTKKETYTRRITTCLASG 142
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18419954|ref|NP_568013.1| uncharacterized protein [Arabidopsis thaliana] gi|11762152|gb|AAG40354.1|AF325002_1 AT4g37020 [Arabidopsis thaliana] gi|110736928|dbj|BAF00421.1| hypothetical protein [Arabidopsis thaliana] gi|332661336|gb|AEE86736.1| uncharacterized protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 171 bits (432), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 93/143 (65%), Positives = 117/143 (81%), Gaps = 5/143 (3%)
Query: 9 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLI 68
ET+VELL V GRRP LP++VCCSSRDELDAVCS++S L IS ++L+SDLA+ ER ++
Sbjct: 35 ETVVELLG--VLGRRPWLPIVVCCSSRDELDAVCSSLSTLPYISLAALYSDLADRERAMV 92
Query: 69 LEEFRHTAMKWNQK---VTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVL 125
+E+FR + WNQ+ V E+ +ESE GK+E SH++VVTD CLPLLSSGES++SARVL
Sbjct: 93 IEKFRQATINWNQQLNSVVEEGLEESENGKEEKTSHLVVVTDVCLPLLSSGESSLSARVL 152
Query: 126 INYELPTKKETYIRRMTTCLAAG 148
INYELPTKKETY RR+TTCLA+G
Sbjct: 153 INYELPTKKETYTRRITTCLASG 175
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|334187233|ref|NP_001190941.1| uncharacterized protein [Arabidopsis thaliana] gi|332661337|gb|AEE86737.1| uncharacterized protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 171 bits (432), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 93/143 (65%), Positives = 117/143 (81%), Gaps = 5/143 (3%)
Query: 9 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLI 68
ET+VELL V GRRP LP++VCCSSRDELDAVCS++S L IS ++L+SDLA+ ER ++
Sbjct: 35 ETVVELLG--VLGRRPWLPIVVCCSSRDELDAVCSSLSTLPYISLAALYSDLADRERAMV 92
Query: 69 LEEFRHTAMKWNQK---VTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVL 125
+E+FR + WNQ+ V E+ +ESE GK+E SH++VVTD CLPLLSSGES++SARVL
Sbjct: 93 IEKFRQATINWNQQLNSVVEEGLEESENGKEEKTSHLVVVTDVCLPLLSSGESSLSARVL 152
Query: 126 INYELPTKKETYIRRMTTCLAAG 148
INYELPTKKETY RR+TTCLA+G
Sbjct: 153 INYELPTKKETYTRRITTCLASG 175
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224094352|ref|XP_002310146.1| predicted protein [Populus trichocarpa] gi|222853049|gb|EEE90596.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 170 bits (430), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 92/161 (57%), Positives = 116/161 (72%), Gaps = 16/161 (9%)
Query: 9 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLI 68
+TLV LL VA RRP LP++VCC+SRD+LDAVCSAVSNL IS +SL+SDLAE++R +I
Sbjct: 30 DTLVHLLG--VAARRPALPIVVCCTSRDQLDAVCSAVSNLPFISLASLYSDLAESDRNVI 87
Query: 69 LEEFRHTAMKWNQKVT----EQSGDESETG---------KDEHKSHMIVVTDACLPLLSS 115
LEEFR ++W+Q V G ETG ++ KSHMIVVTDACLPLL+
Sbjct: 88 LEEFRKATVRWSQIVNAGQSAGGGSGGETGNNNDESNTNNNKTKSHMIVVTDACLPLLAL 147
Query: 116 GESAISARVLINYELPTKKETYIRRMTTCLAAGTSFSDIIL 156
GE+ +SARVLINYELP+ KETY+RRM TCLAA ++++
Sbjct: 148 GEAPVSARVLINYELPS-KETYLRRMATCLAADGIVINVVV 187
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356496882|ref|XP_003517294.1| PREDICTED: eukaryotic initiation factor 4A-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 167 bits (422), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 80/139 (57%), Positives = 107/139 (76%), Gaps = 3/139 (2%)
Query: 9 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLI 68
+T++EL+ LV RRP LP++VCCS+RD+LD++CS++S L +S S+L+SDL E ER+ I
Sbjct: 36 QTVIELVDLV--ARRPCLPIVVCCSTRDDLDSLCSSLSTLPFLSSSALYSDLGEDERSFI 93
Query: 69 LEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINY 128
LE+FR +WNQ + +E E GKDE +SHMI+VTDACLPLL+SGE ++A +LINY
Sbjct: 94 LEKFRQVTARWNQTNHGGAPNEDEIGKDE-RSHMIIVTDACLPLLASGEFPLNAHLLINY 152
Query: 129 ELPTKKETYIRRMTTCLAA 147
ELP KKETY RR+ TCL A
Sbjct: 153 ELPAKKETYGRRLATCLTA 171
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
No hits with e-value below 0.001 by BLAST
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00019480001 | SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (198 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 159 | |||
| PTZ00424 | 401 | PTZ00424, PTZ00424, helicase 45; Provisional | 2e-08 | |
| pfam00271 | 78 | pfam00271, Helicase_C, Helicase conserved C-termin | 5e-04 | |
| COG0513 | 513 | COG0513, SrmB, Superfamily II DNA and RNA helicase | 0.001 | |
| cd00079 | 131 | cd00079, HELICc, Helicase superfamily c-terminal d | 0.002 |
| >gnl|CDD|185609 PTZ00424, PTZ00424, helicase 45; Provisional | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 2e-08
Identities = 30/113 (26%), Positives = 52/113 (46%), Gaps = 28/113 (24%)
Query: 29 IVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSG 88
I+ C++R ++D + + D + S +H D+ + +R LI+ EFR SG
Sbjct: 271 IIYCNTRRKVDYLTKKMHE-RDFTVSCMHGDMDQKDRDLIMREFR-------------SG 316
Query: 89 DESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRM 141
+ +++ TD LL+ G ++INY+LP E YI R+
Sbjct: 317 ----------STRVLITTD----LLARGIDVQQVSLVINYDLPASPENYIHRI 355
|
Length = 401 |
| >gnl|CDD|201125 pfam00271, Helicase_C, Helicase conserved C-terminal domain | Back alignment and domain information |
|---|
Score = 36.7 bits (86), Expect = 5e-04
Identities = 25/98 (25%), Positives = 37/98 (37%), Gaps = 33/98 (33%)
Query: 47 NLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVT 106
I + LH L++ ER ILE+FR KS ++V T
Sbjct: 4 RKPGIKVARLHGGLSQEEREEILEDFR-----------------------NGKSKVLVAT 40
Query: 107 DACLPLLSSGESAI---SARVLINYELPTKKETYIRRM 141
D I ++INY+LP +YI+R+
Sbjct: 41 DV-------AGRGIDLPDVNLVINYDLPWNPASYIQRI 71
|
The Prosite family is restricted to DEAD/H helicases, whereas this domain family is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. Length = 78 |
| >gnl|CDD|223587 COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 38.2 bits (89), Expect = 0.001
Identities = 30/132 (22%), Positives = 52/132 (39%), Gaps = 33/132 (25%)
Query: 9 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLI 68
E L++LL GR +IV ++ ++ + ++ ++LH DL + ER
Sbjct: 262 ELLLKLLKDEDEGR-----VIVFVRTKRLVEELAESLRKR-GFKVAALHGDLPQEERDRA 315
Query: 69 LEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINY 128
LE+F+ G+ +V TD + + G +INY
Sbjct: 316 LEKFK-------------DGELRV----------LVATD----VAARGLDIPDVSHVINY 348
Query: 129 ELPTKKETYIRR 140
+LP E Y+ R
Sbjct: 349 DLPLDPEDYVHR 360
|
Length = 513 |
| >gnl|CDD|238034 cd00079, HELICc, Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process | Back alignment and domain information |
|---|
Score = 36.4 bits (85), Expect = 0.002
Identities = 32/133 (24%), Positives = 59/133 (44%), Gaps = 31/133 (23%)
Query: 9 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLI 68
E L+ELL + G +++ C S+ LD + + I ++LH D ++ ER +
Sbjct: 15 EALLELLKEHLK---KGGKVLIFCPSKKMLDELAELLRKP-GIKVAALHGDGSQEEREEV 70
Query: 69 LEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINY 128
L++FR E + ++V TD ++ G + V+INY
Sbjct: 71 LKDFR-----------------------EGEIVVLVATDV----IARGIDLPNVSVVINY 103
Query: 129 ELPTKKETYIRRM 141
+LP +Y++R+
Sbjct: 104 DLPWSPSSYLQRI 116
|
Length = 131 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 159 | |||
| KOG0331 | 519 | consensus ATP-dependent RNA helicase [RNA processi | 99.97 | |
| KOG0328 | 400 | consensus Predicted ATP-dependent RNA helicase FAL | 99.97 | |
| COG0513 | 513 | SrmB Superfamily II DNA and RNA helicases [DNA rep | 99.96 | |
| KOG0330 | 476 | consensus ATP-dependent RNA helicase [RNA processi | 99.96 | |
| KOG0333 | 673 | consensus U5 snRNP-like RNA helicase subunit [RNA | 99.96 | |
| KOG0326 | 459 | consensus ATP-dependent RNA helicase [RNA processi | 99.95 | |
| PRK04837 | 423 | ATP-dependent RNA helicase RhlB; Provisional | 99.95 | |
| KOG0340 | 442 | consensus ATP-dependent RNA helicase [RNA processi | 99.95 | |
| KOG0332 | 477 | consensus ATP-dependent RNA helicase [RNA processi | 99.94 | |
| PRK10590 | 456 | ATP-dependent RNA helicase RhlE; Provisional | 99.94 | |
| PTZ00110 | 545 | helicase; Provisional | 99.94 | |
| PRK04537 | 572 | ATP-dependent RNA helicase RhlB; Provisional | 99.94 | |
| PRK11776 | 460 | ATP-dependent RNA helicase DbpA; Provisional | 99.94 | |
| PRK11192 | 434 | ATP-dependent RNA helicase SrmB; Provisional | 99.93 | |
| KOG0335 | 482 | consensus ATP-dependent RNA helicase [RNA processi | 99.93 | |
| PLN00206 | 518 | DEAD-box ATP-dependent RNA helicase; Provisional | 99.93 | |
| PRK01297 | 475 | ATP-dependent RNA helicase RhlB; Provisional | 99.93 | |
| TIGR00614 | 470 | recQ_fam ATP-dependent DNA helicase, RecQ family. | 99.92 | |
| PRK11634 | 629 | ATP-dependent RNA helicase DeaD; Provisional | 99.92 | |
| KOG0336 | 629 | consensus ATP-dependent RNA helicase [RNA processi | 99.92 | |
| KOG0341 | 610 | consensus DEAD-box protein abstrakt [RNA processin | 99.92 | |
| KOG0342 | 543 | consensus ATP-dependent RNA helicase pitchoune [RN | 99.91 | |
| PLN03137 | 1195 | ATP-dependent DNA helicase; Q4-like; Provisional | 99.91 | |
| PTZ00424 | 401 | helicase 45; Provisional | 99.91 | |
| PRK11057 | 607 | ATP-dependent DNA helicase RecQ; Provisional | 99.91 | |
| KOG0343 | 758 | consensus RNA Helicase [RNA processing and modific | 99.91 | |
| TIGR03817 | 742 | DECH_helic helicase/secretion neighborhood putativ | 99.9 | |
| KOG0345 | 567 | consensus ATP-dependent RNA helicase [RNA processi | 99.9 | |
| KOG0327 | 397 | consensus Translation initiation factor 4F, helica | 99.89 | |
| KOG0338 | 691 | consensus ATP-dependent RNA helicase [RNA processi | 99.89 | |
| KOG0347 | 731 | consensus RNA helicase [RNA processing and modific | 99.89 | |
| TIGR01389 | 591 | recQ ATP-dependent DNA helicase RecQ. The ATP-depe | 99.89 | |
| KOG0344 | 593 | consensus ATP-dependent RNA helicase [RNA processi | 99.89 | |
| PRK04914 | 956 | ATP-dependent helicase HepA; Validated | 99.88 | |
| KOG0346 | 569 | consensus RNA helicase [RNA processing and modific | 99.88 | |
| COG1111 | 542 | MPH1 ERCC4-like helicases [DNA replication, recomb | 99.88 | |
| PRK13767 | 876 | ATP-dependent helicase; Provisional | 99.86 | |
| KOG0348 | 708 | consensus ATP-dependent RNA helicase [RNA processi | 99.86 | |
| PRK12898 | 656 | secA preprotein translocase subunit SecA; Reviewed | 99.86 | |
| COG0514 | 590 | RecQ Superfamily II DNA helicase [DNA replication, | 99.86 | |
| KOG4284 | 980 | consensus DEAD box protein [Transcription] | 99.86 | |
| PRK09200 | 790 | preprotein translocase subunit SecA; Reviewed | 99.86 | |
| KOG0339 | 731 | consensus ATP-dependent RNA helicase [RNA processi | 99.85 | |
| KOG0350 | 620 | consensus DEAD-box ATP-dependent RNA helicase [RNA | 99.85 | |
| TIGR00631 | 655 | uvrb excinuclease ABC, B subunit. This family is b | 99.84 | |
| PRK13766 | 773 | Hef nuclease; Provisional | 99.84 | |
| PRK09751 | 1490 | putative ATP-dependent helicase Lhr; Provisional | 99.84 | |
| PRK05298 | 652 | excinuclease ABC subunit B; Provisional | 99.83 | |
| cd00079 | 131 | HELICc Helicase superfamily c-terminal domain; ass | 99.83 | |
| PF00271 | 78 | Helicase_C: Helicase conserved C-terminal domain; | 99.82 | |
| TIGR03714 | 762 | secA2 accessory Sec system translocase SecA2. Memb | 99.82 | |
| KOG0334 | 997 | consensus RNA helicase [RNA processing and modific | 99.82 | |
| TIGR01587 | 358 | cas3_core CRISPR-associated helicase Cas3. This mo | 99.82 | |
| KOG0349 | 725 | consensus Putative DEAD-box RNA helicase DDX1 [RNA | 99.81 | |
| TIGR00963 | 745 | secA preprotein translocase, SecA subunit. The pro | 99.81 | |
| PHA02653 | 675 | RNA helicase NPH-II; Provisional | 99.8 | |
| TIGR00580 | 926 | mfd transcription-repair coupling factor (mfd). Al | 99.8 | |
| PRK10689 | 1147 | transcription-repair coupling factor; Provisional | 99.79 | |
| TIGR01970 | 819 | DEAH_box_HrpB ATP-dependent helicase HrpB. This mo | 99.78 | |
| PRK12906 | 796 | secA preprotein translocase subunit SecA; Reviewed | 99.78 | |
| TIGR02621 | 844 | cas3_GSU0051 CRISPR-associated helicase Cas3, Anae | 99.78 | |
| PRK10917 | 681 | ATP-dependent DNA helicase RecG; Provisional | 99.78 | |
| KOG0337 | 529 | consensus ATP-dependent RNA helicase [RNA processi | 99.77 | |
| PRK11664 | 812 | ATP-dependent RNA helicase HrpB; Provisional | 99.77 | |
| TIGR00643 | 630 | recG ATP-dependent DNA helicase RecG. | 99.77 | |
| KOG0354 | 746 | consensus DEAD-box like helicase [General function | 99.76 | |
| PHA02558 | 501 | uvsW UvsW helicase; Provisional | 99.75 | |
| PRK02362 | 737 | ski2-like helicase; Provisional | 99.75 | |
| PRK12900 | 1025 | secA preprotein translocase subunit SecA; Reviewed | 99.74 | |
| TIGR03158 | 357 | cas3_cyano CRISPR-associated helicase, Cyano-type. | 99.73 | |
| KOG0351 | 941 | consensus ATP-dependent DNA helicase [Replication, | 99.72 | |
| smart00490 | 82 | HELICc helicase superfamily c-terminal domain. | 99.72 | |
| TIGR00603 | 732 | rad25 DNA repair helicase rad25. All proteins in t | 99.7 | |
| COG1201 | 814 | Lhr Lhr-like helicases [General function predictio | 99.69 | |
| PRK00254 | 720 | ski2-like helicase; Provisional | 99.68 | |
| PRK11131 | 1294 | ATP-dependent RNA helicase HrpA; Provisional | 99.68 | |
| PRK09401 | 1176 | reverse gyrase; Reviewed | 99.65 | |
| PRK01172 | 674 | ski2-like helicase; Provisional | 99.63 | |
| TIGR01967 | 1283 | DEAH_box_HrpA ATP-dependent helicase HrpA. This mo | 99.63 | |
| PRK09694 | 878 | helicase Cas3; Provisional | 99.59 | |
| KOG0352 | 641 | consensus ATP-dependent DNA helicase [Replication, | 99.56 | |
| PLN03142 | 1033 | Probable chromatin-remodeling complex ATPase chain | 99.55 | |
| PRK14701 | 1638 | reverse gyrase; Provisional | 99.54 | |
| TIGR01054 | 1171 | rgy reverse gyrase. Generally, these gyrases are e | 99.5 | |
| COG1061 | 442 | SSL2 DNA or RNA helicases of superfamily II [Trans | 99.49 | |
| PRK13104 | 896 | secA preprotein translocase subunit SecA; Reviewed | 99.42 | |
| PRK12904 | 830 | preprotein translocase subunit SecA; Reviewed | 99.4 | |
| KOG0329 | 387 | consensus ATP-dependent RNA helicase [RNA processi | 99.39 | |
| KOG0353 | 695 | consensus ATP-dependent DNA helicase [General func | 99.39 | |
| PRK11448 | 1123 | hsdR type I restriction enzyme EcoKI subunit R; Pr | 99.39 | |
| COG0556 | 663 | UvrB Helicase subunit of the DNA excision repair c | 99.38 | |
| PRK13107 | 908 | preprotein translocase subunit SecA; Reviewed | 99.37 | |
| COG1202 | 830 | Superfamily II helicase, archaea-specific [General | 99.36 | |
| TIGR00595 | 505 | priA primosomal protein N'. All proteins in this f | 99.32 | |
| PRK05580 | 679 | primosome assembly protein PriA; Validated | 99.3 | |
| COG4098 | 441 | comFA Superfamily II DNA/RNA helicase required for | 99.26 | |
| COG1205 | 851 | Distinct helicase family with a unique C-terminal | 99.18 | |
| COG1200 | 677 | RecG RecG-like helicase [DNA replication, recombin | 99.1 | |
| COG1197 | 1139 | Mfd Transcription-repair coupling factor (superfam | 98.98 | |
| COG1203 | 733 | CRISPR-associated helicase Cas3 [Defense mechanism | 98.97 | |
| COG1204 | 766 | Superfamily II helicase [General function predicti | 98.95 | |
| KOG4150 | 1034 | consensus Predicted ATP-dependent RNA helicase [RN | 98.93 | |
| KOG0391 | 1958 | consensus SNF2 family DNA-dependent ATPase [Genera | 98.81 | |
| KOG0384 | 1373 | consensus Chromodomain-helicase DNA-binding protei | 98.77 | |
| PRK12903 | 925 | secA preprotein translocase subunit SecA; Reviewed | 98.77 | |
| KOG0385 | 971 | consensus Chromatin remodeling complex WSTF-ISWI, | 98.66 | |
| KOG0390 | 776 | consensus DNA repair protein, SNF2 family [Replica | 98.65 | |
| KOG0950 | 1008 | consensus DNA polymerase theta/eta, DEAD-box super | 98.64 | |
| PRK12326 | 764 | preprotein translocase subunit SecA; Reviewed | 98.63 | |
| KOG0392 | 1549 | consensus SNF2 family DNA-dependent ATPase domain- | 98.57 | |
| KOG0953 | 700 | consensus Mitochondrial RNA helicase SUV3, DEAD-bo | 98.53 | |
| COG1643 | 845 | HrpA HrpA-like helicases [DNA replication, recombi | 98.53 | |
| KOG0387 | 923 | consensus Transcription-coupled repair protein CSB | 98.51 | |
| COG0553 | 866 | HepA Superfamily II DNA/RNA helicases, SNF2 family | 98.46 | |
| PRK12899 | 970 | secA preprotein translocase subunit SecA; Reviewed | 98.44 | |
| KOG0947 | 1248 | consensus Cytoplasmic exosomal RNA helicase SKI2, | 98.4 | |
| PRK12901 | 1112 | secA preprotein translocase subunit SecA; Reviewed | 98.35 | |
| TIGR01407 | 850 | dinG_rel DnaQ family exonuclease/DinG family helic | 98.34 | |
| KOG0920 | 924 | consensus ATP-dependent RNA helicase A [RNA proces | 98.3 | |
| KOG0922 | 674 | consensus DEAH-box RNA helicase [RNA processing an | 98.3 | |
| KOG0951 | 1674 | consensus RNA helicase BRR2, DEAD-box superfamily | 98.29 | |
| KOG0389 | 941 | consensus SNF2 family DNA-dependent ATPase [Chroma | 98.26 | |
| COG4096 | 875 | HsdR Type I site-specific restriction-modification | 98.24 | |
| PRK13103 | 913 | secA preprotein translocase subunit SecA; Reviewed | 98.23 | |
| KOG0388 | 1185 | consensus SNF2 family DNA-dependent ATPase [Replic | 98.17 | |
| KOG1000 | 689 | consensus Chromatin remodeling protein HARP/SMARCA | 98.14 | |
| TIGR00348 | 667 | hsdR type I site-specific deoxyribonuclease, HsdR | 98.13 | |
| KOG0948 | 1041 | consensus Nuclear exosomal RNA helicase MTR4, DEAD | 98.1 | |
| KOG1002 | 791 | consensus Nucleotide excision repair protein RAD16 | 98.04 | |
| PF13307 | 167 | Helicase_C_2: Helicase C-terminal domain; PDB: 4A1 | 98.02 | |
| CHL00122 | 870 | secA preprotein translocase subunit SecA; Validate | 97.89 | |
| COG1110 | 1187 | Reverse gyrase [DNA replication, recombination, an | 97.83 | |
| KOG1123 | 776 | consensus RNA polymerase II transcription initiati | 97.81 | |
| KOG1015 | 1567 | consensus Transcription regulator XNP/ATRX, DEAD-b | 97.79 | |
| KOG0952 | 1230 | consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup | 97.74 | |
| KOG0923 | 902 | consensus mRNA splicing factor ATP-dependent RNA h | 97.73 | |
| KOG0924 | 1042 | consensus mRNA splicing factor ATP-dependent RNA h | 97.72 | |
| COG1199 | 654 | DinG Rad3-related DNA helicases [Transcription / D | 97.67 | |
| COG4889 | 1518 | Predicted helicase [General function prediction on | 97.61 | |
| KOG0386 | 1157 | consensus Chromatin remodeling complex SWI/SNF, co | 97.6 | |
| TIGR00596 | 814 | rad1 DNA repair protein (rad1). This family is bas | 97.59 | |
| KOG0949 | 1330 | consensus Predicted helicase, DEAD-box superfamily | 97.56 | |
| PRK08074 | 928 | bifunctional ATP-dependent DNA helicase/DNA polyme | 97.55 | |
| COG4581 | 1041 | Superfamily II RNA helicase [DNA replication, reco | 97.55 | |
| PRK11747 | 697 | dinG ATP-dependent DNA helicase DinG; Provisional | 97.44 | |
| PF06862 | 442 | DUF1253: Protein of unknown function (DUF1253); In | 97.37 | |
| PRK12902 | 939 | secA preprotein translocase subunit SecA; Reviewed | 97.29 | |
| PRK07246 | 820 | bifunctional ATP-dependent DNA helicase/DNA polyme | 97.29 | |
| TIGR00604 | 705 | rad3 DNA repair helicase (rad3). All proteins in t | 97.24 | |
| KOG4439 | 901 | consensus RNA polymerase II transcription terminat | 97.02 | |
| COG1198 | 730 | PriA Primosomal protein N' (replication factor Y) | 96.95 | |
| KOG0926 | 1172 | consensus DEAH-box RNA helicase [RNA processing an | 96.91 | |
| PRK10917 | 681 | ATP-dependent DNA helicase RecG; Provisional | 96.86 | |
| COG0653 | 822 | SecA Preprotein translocase subunit SecA (ATPase, | 96.85 | |
| PRK05580 | 679 | primosome assembly protein PriA; Validated | 96.64 | |
| smart00492 | 141 | HELICc3 helicase superfamily c-terminal domain. | 96.51 | |
| TIGR00595 | 505 | priA primosomal protein N'. All proteins in this f | 96.48 | |
| KOG0701 | 1606 | consensus dsRNA-specific nuclease Dicer and relate | 96.46 | |
| TIGR00643 | 630 | recG ATP-dependent DNA helicase RecG. | 96.44 | |
| PRK14873 | 665 | primosome assembly protein PriA; Provisional | 96.22 | |
| PF02399 | 824 | Herpes_ori_bp: Origin of replication binding prote | 96.19 | |
| TIGR00580 | 926 | mfd transcription-repair coupling factor (mfd). Al | 95.95 | |
| TIGR02562 | 1110 | cas3_yersinia CRISPR-associated helicase Cas3. The | 95.93 | |
| TIGR03117 | 636 | cas_csf4 CRISPR-associated DEAD/DEAH-box helicase | 95.89 | |
| KOG0925 | 699 | consensus mRNA splicing factor ATP-dependent RNA h | 95.67 | |
| PF13871 | 278 | Helicase_C_4: Helicase_C-like | 95.65 | |
| COG1110 | 1187 | Reverse gyrase [DNA replication, recombination, an | 95.35 | |
| COG1198 | 730 | PriA Primosomal protein N' (replication factor Y) | 95.29 | |
| smart00491 | 142 | HELICc2 helicase superfamily c-terminal domain. | 95.27 | |
| PRK10689 | 1147 | transcription-repair coupling factor; Provisional | 95.23 | |
| COG0513 | 513 | SrmB Superfamily II DNA and RNA helicases [DNA rep | 94.78 | |
| COG1200 | 677 | RecG RecG-like helicase [DNA replication, recombin | 94.45 | |
| PRK11776 | 460 | ATP-dependent RNA helicase DbpA; Provisional | 94.35 | |
| KOG1016 | 1387 | consensus Predicted DNA helicase, DEAD-box superfa | 94.34 | |
| PRK14701 | 1638 | reverse gyrase; Provisional | 94.32 | |
| cd00268 | 203 | DEADc DEAD-box helicases. A diverse family of prot | 94.25 | |
| PRK11634 | 629 | ATP-dependent RNA helicase DeaD; Provisional | 93.59 | |
| TIGR00614 | 470 | recQ_fam ATP-dependent DNA helicase, RecQ family. | 93.5 | |
| KOG1001 | 674 | consensus Helicase-like transcription factor HLTF/ | 92.79 | |
| cd01524 | 90 | RHOD_Pyr_redox Member of the Rhodanese Homology Do | 92.52 | |
| TIGR01389 | 591 | recQ ATP-dependent DNA helicase RecQ. The ATP-depe | 92.17 | |
| cd01528 | 101 | RHOD_2 Member of the Rhodanese Homology Domain sup | 92.14 | |
| TIGR01054 | 1171 | rgy reverse gyrase. Generally, these gyrases are e | 91.99 | |
| KOG2340 | 698 | consensus Uncharacterized conserved protein [Funct | 91.88 | |
| PRK11192 | 434 | ATP-dependent RNA helicase SrmB; Provisional | 91.6 | |
| PRK04537 | 572 | ATP-dependent RNA helicase RhlB; Provisional | 91.33 | |
| cd00158 | 89 | RHOD Rhodanese Homology Domain (RHOD); an alpha be | 91.16 | |
| cd01529 | 96 | 4RHOD_Repeats Member of the Rhodanese Homology Dom | 91.12 | |
| PRK10590 | 456 | ATP-dependent RNA helicase RhlE; Provisional | 91.11 | |
| cd01449 | 118 | TST_Repeat_2 Thiosulfate sulfurtransferase (TST), | 91.07 | |
| PRK04837 | 423 | ATP-dependent RNA helicase RhlB; Provisional | 90.33 | |
| cd01518 | 101 | RHOD_YceA Member of the Rhodanese Homology Domain | 90.26 | |
| KOG0347 | 731 | consensus RNA helicase [RNA processing and modific | 90.21 | |
| cd01444 | 96 | GlpE_ST GlpE sulfurtransferase (ST) and homologs a | 89.88 | |
| smart00450 | 100 | RHOD Rhodanese Homology Domain. An alpha beta fold | 89.74 | |
| cd01527 | 99 | RHOD_YgaP Member of the Rhodanese Homology Domain | 89.63 | |
| cd01448 | 122 | TST_Repeat_1 Thiosulfate sulfurtransferase (TST), | 89.44 | |
| PRK13766 | 773 | Hef nuclease; Provisional | 89.2 | |
| cd01523 | 100 | RHOD_Lact_B Member of the Rhodanese Homology Domai | 89.05 | |
| PRK11057 | 607 | ATP-dependent DNA helicase RecQ; Provisional | 88.84 | |
| PRK01297 | 475 | ATP-dependent RNA helicase RhlB; Provisional | 88.77 | |
| cd01520 | 128 | RHOD_YbbB Member of the Rhodanese Homology Domain | 88.24 | |
| PLN03137 | 1195 | ATP-dependent DNA helicase; Q4-like; Provisional | 88.18 | |
| cd01532 | 92 | 4RHOD_Repeat_1 Member of the Rhodanese Homology Do | 88.13 | |
| PTZ00110 | 545 | helicase; Provisional | 87.7 | |
| PF00270 | 169 | DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 | 87.29 | |
| cd01519 | 106 | RHOD_HSP67B2 Member of the Rhodanese Homology Doma | 87.28 | |
| KOG0330 | 476 | consensus ATP-dependent RNA helicase [RNA processi | 87.28 | |
| cd01533 | 109 | 4RHOD_Repeat_2 Member of the Rhodanese Homology Do | 87.22 | |
| COG1197 | 1139 | Mfd Transcription-repair coupling factor (superfam | 87.09 | |
| KOG0331 | 519 | consensus ATP-dependent RNA helicase [RNA processi | 86.97 | |
| cd01522 | 117 | RHOD_1 Member of the Rhodanese Homology Domain sup | 86.93 | |
| cd01526 | 122 | RHOD_ThiF Member of the Rhodanese Homology Domain | 86.41 | |
| KOG0339 | 731 | consensus ATP-dependent RNA helicase [RNA processi | 85.91 | |
| TIGR03817 | 742 | DECH_helic helicase/secretion neighborhood putativ | 85.15 | |
| PF00581 | 113 | Rhodanese: Rhodanese-like domain This Prosite entr | 85.09 | |
| cd01447 | 103 | Polysulfide_ST Polysulfide-sulfurtransferase - Rho | 85.08 | |
| PLN02160 | 136 | thiosulfate sulfurtransferase | 85.0 | |
| cd01525 | 105 | RHOD_Kc Member of the Rhodanese Homology Domain su | 84.99 | |
| TIGR03865 | 162 | PQQ_CXXCW PQQ-dependent catabolism-associated CXXC | 84.96 | |
| cd01535 | 145 | 4RHOD_Repeat_4 Member of the Rhodanese Homology Do | 84.61 | |
| cd01521 | 110 | RHOD_PspE2 Member of the Rhodanese Homology Domain | 83.86 | |
| PRK09751 | 1490 | putative ATP-dependent helicase Lhr; Provisional | 83.54 | |
| cd01445 | 138 | TST_Repeats Thiosulfate sulfurtransferases (TST) c | 83.51 | |
| cd01534 | 95 | 4RHOD_Repeat_3 Member of the Rhodanese Homology Do | 83.21 | |
| PRK09401 | 1176 | reverse gyrase; Reviewed | 82.83 | |
| cd00046 | 144 | DEXDc DEAD-like helicases superfamily. A diverse f | 82.52 | |
| cd01530 | 121 | Cdc25 Cdc25 phosphatases are members of the Rhodan | 82.44 | |
| PF10593 | 239 | Z1: Z1 domain; InterPro: IPR018310 This entry repr | 81.1 | |
| KOG0385 | 971 | consensus Chromatin remodeling complex WSTF-ISWI, | 81.02 | |
| PRK01415 | 247 | hypothetical protein; Validated | 80.77 | |
| COG1111 | 542 | MPH1 ERCC4-like helicases [DNA replication, recomb | 80.54 | |
| PRK10287 | 104 | thiosulfate:cyanide sulfurtransferase; Provisional | 80.29 |
| >KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-31 Score=229.99 Aligned_cols=121 Identities=21% Similarity=0.350 Sum_probs=110.5
Q ss_pred cHHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhccccccccccccc
Q 031433 7 FQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQ 86 (159)
Q Consensus 7 ~~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~ 86 (159)
+..+|.++|..+. ...+.|+||||+|+++|++|+..|+..+ +.+..|||+.++.+|..+|++|++|
T Consensus 325 K~~~l~~lL~~~~--~~~~~KvIIFc~tkr~~~~l~~~l~~~~-~~a~~iHGd~sQ~eR~~~L~~FreG----------- 390 (519)
T KOG0331|consen 325 KLRKLGKLLEDIS--SDSEGKVIIFCETKRTCDELARNLRRKG-WPAVAIHGDKSQSERDWVLKGFREG----------- 390 (519)
T ss_pred HHHHHHHHHHHHh--ccCCCcEEEEecchhhHHHHHHHHHhcC-cceeeecccccHHHHHHHHHhcccC-----------
Confidence 4556667777665 4567899999999999999999999988 5999999999999999999999999
Q ss_pred CCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccC--CCCeEEEEEEe
Q 031433 87 SGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLA--AGTSFSDIILL 157 (159)
Q Consensus 87 ~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~--~~g~~i~~v~~ 157 (159)
+..||||||+ ++||||+++|++|||||+|.++++|+||+||+|| +.|.+++|++.
T Consensus 391 ------------~~~vLVATdV----AaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~ 447 (519)
T KOG0331|consen 391 ------------KSPVLVATDV----AARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTS 447 (519)
T ss_pred ------------CcceEEEccc----ccccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeH
Confidence 8999999999 9999999999999999999999999999999977 67999999874
|
|
| >KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-31 Score=211.76 Aligned_cols=121 Identities=22% Similarity=0.411 Sum_probs=109.5
Q ss_pred cHHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhccccccccccccc
Q 031433 7 FQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQ 86 (159)
Q Consensus 7 ~~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~ 86 (159)
+++++.+-|..+.. ...-.+++|||||++.+++|.+.+++.+ +.+..+||+|++++|.+++++||.|
T Consensus 249 ~EewKfdtLcdLYd-~LtItQavIFcnTk~kVdwLtekm~~~n-ftVssmHGDm~qkERd~im~dFRsg----------- 315 (400)
T KOG0328|consen 249 KEEWKFDTLCDLYD-TLTITQAVIFCNTKRKVDWLTEKMREAN-FTVSSMHGDMEQKERDKIMNDFRSG----------- 315 (400)
T ss_pred hhhhhHhHHHHHhh-hhehheEEEEecccchhhHHHHHHHhhC-ceeeeccCCcchhHHHHHHHHhhcC-----------
Confidence 45555555555554 5556899999999999999999999998 5999999999999999999999999
Q ss_pred CCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcc--cCCCCeEEEEEE
Q 031433 87 SGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LAAGTSFSDIIL 156 (159)
Q Consensus 87 ~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~--~~~~g~~i~~v~ 156 (159)
+.+|||+||+ .+||+|+|.|++|||||+|.+.+.|+||+||. .++.|.+|+||.
T Consensus 316 ------------~SrvLitTDV----waRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkGvainFVk 371 (400)
T KOG0328|consen 316 ------------KSRVLITTDV----WARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVK 371 (400)
T ss_pred ------------CceEEEEech----hhccCCcceeEEEEecCCCccHHHHhhhhccccccCCcceEEEEec
Confidence 8999999999 99999999999999999999999999999999 567899999984
|
|
| >COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-29 Score=219.28 Aligned_cols=118 Identities=22% Similarity=0.352 Sum_probs=108.6
Q ss_pred HHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCC
Q 031433 10 TLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGD 89 (159)
Q Consensus 10 ~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~ 89 (159)
.+.++|..++. .....++||||+|+..++.|+..|...| +++..|||+|++++|.+++++|++|
T Consensus 259 ~k~~~L~~ll~-~~~~~~~IVF~~tk~~~~~l~~~l~~~g-~~~~~lhG~l~q~~R~~~l~~F~~g-------------- 322 (513)
T COG0513 259 EKLELLLKLLK-DEDEGRVIVFVRTKRLVEELAESLRKRG-FKVAALHGDLPQEERDRALEKFKDG-------------- 322 (513)
T ss_pred HHHHHHHHHHh-cCCCCeEEEEeCcHHHHHHHHHHHHHCC-CeEEEecCCCCHHHHHHHHHHHHcC--------------
Confidence 37777777777 4455689999999999999999999998 6999999999999999999999998
Q ss_pred CCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccC--CCCeEEEEEE
Q 031433 90 ESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLA--AGTSFSDIIL 156 (159)
Q Consensus 90 ~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~--~~g~~i~~v~ 156 (159)
+.+||||||+ ++||||+++|++|||||+|.++++|+||+||+|| ++|.+++|++
T Consensus 323 ---------~~~vLVaTDv----aaRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~ 378 (513)
T COG0513 323 ---------ELRVLVATDV----AARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVT 378 (513)
T ss_pred ---------CCCEEEEech----hhccCCccccceeEEccCCCCHHHheeccCccccCCCCCeEEEEeC
Confidence 8999999999 9999999999999999999999999999999955 5799999885
|
|
| >KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.2e-29 Score=206.54 Aligned_cols=114 Identities=25% Similarity=0.411 Sum_probs=105.4
Q ss_pred HHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCC
Q 031433 10 TLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGD 89 (159)
Q Consensus 10 ~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~ 89 (159)
.|+.||+ +..+..+|||||+..++++++-.|+..| +.+..|||+|++..|...++.|+++
T Consensus 290 yLV~ll~-----e~~g~s~iVF~~t~~tt~~la~~L~~lg-~~a~~LhGqmsq~~Rlg~l~~Fk~~-------------- 349 (476)
T KOG0330|consen 290 YLVYLLN-----ELAGNSVIVFCNTCNTTRFLALLLRNLG-FQAIPLHGQMSQSKRLGALNKFKAG-------------- 349 (476)
T ss_pred hHHHHHH-----hhcCCcEEEEEeccchHHHHHHHHHhcC-cceecccchhhHHHHHHHHHHHhcc--------------
Confidence 4455555 5556999999999999999999999999 6999999999999999999999999
Q ss_pred CCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcc--cCCCCeEEEEEE
Q 031433 90 ESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LAAGTSFSDIIL 156 (159)
Q Consensus 90 ~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~--~~~~g~~i~~v~ 156 (159)
...||+|||+ ++||+|+|.|++|||||+|.+..+||||+||+ .+++|.+|++|+
T Consensus 350 ---------~r~iLv~TDV----aSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVt 405 (476)
T KOG0330|consen 350 ---------ARSILVCTDV----ASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAGRSGKAITLVT 405 (476)
T ss_pred ---------CCcEEEecch----hcccCCCCCceEEEecCCCCcHHHHHHHcccccccCCCcceEEEEe
Confidence 8999999999 99999999999999999999999999999999 556799999986
|
|
| >KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.8e-29 Score=211.04 Aligned_cols=111 Identities=18% Similarity=0.342 Sum_probs=103.5
Q ss_pred HHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCC
Q 031433 18 VVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDE 97 (159)
Q Consensus 18 l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (159)
+++ .....++|||+|+++.|+.|++.|.+.| +++..|||+.++++|..+|+.|+.+
T Consensus 511 il~-~~~~ppiIIFvN~kk~~d~lAk~LeK~g-~~~~tlHg~k~qeQRe~aL~~fr~~---------------------- 566 (673)
T KOG0333|consen 511 ILE-SNFDPPIIIFVNTKKGADALAKILEKAG-YKVTTLHGGKSQEQRENALADFREG---------------------- 566 (673)
T ss_pred HHH-hCCCCCEEEEEechhhHHHHHHHHhhcc-ceEEEeeCCccHHHHHHHHHHHHhc----------------------
Confidence 444 4467899999999999999999999999 6999999999999999999999998
Q ss_pred CceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccC--CCCeEEEEEEe
Q 031433 98 HKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLA--AGTSFSDIILL 157 (159)
Q Consensus 98 ~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~--~~g~~i~~v~~ 157 (159)
...||||||+ ++||||+|+|++|||||++.++++|+|||||+|| +.|.+|+|++.
T Consensus 567 -t~dIlVaTDv----AgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiSflt~ 623 (673)
T KOG0333|consen 567 -TGDILVATDV----AGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAISFLTP 623 (673)
T ss_pred -CCCEEEEecc----cccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeEEEecc
Confidence 8999999999 9999999999999999999999999999999955 56999999873
|
|
| >KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-28 Score=198.78 Aligned_cols=124 Identities=22% Similarity=0.385 Sum_probs=114.5
Q ss_pred cCcHHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhccccccccccc
Q 031433 5 FTFQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVT 84 (159)
Q Consensus 5 ~~~~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~ 84 (159)
|+++..++..|..++. ..+-.++||||||..++|.|++.+.+.| ..++++|+.|.++.|.+++..|++|
T Consensus 303 fV~e~qKvhCLntLfs-kLqINQsIIFCNS~~rVELLAkKITelG-yscyyiHakM~Q~hRNrVFHdFr~G--------- 371 (459)
T KOG0326|consen 303 FVEERQKVHCLNTLFS-KLQINQSIIFCNSTNRVELLAKKITELG-YSCYYIHAKMAQEHRNRVFHDFRNG--------- 371 (459)
T ss_pred eechhhhhhhHHHHHH-HhcccceEEEeccchHhHHHHHHHHhcc-chhhHHHHHHHHhhhhhhhhhhhcc---------
Confidence 5566677778887777 6777999999999999999999999999 5999999999999999999999999
Q ss_pred ccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCC--CCeEEEEEEe
Q 031433 85 EQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAA--GTSFSDIILL 157 (159)
Q Consensus 85 ~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~--~g~~i~~v~~ 157 (159)
.++.|||||+ +.||||++.|++|||||+|.++++|+||+||.||- -|.+|++++.
T Consensus 372 --------------~crnLVctDL----~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhlGlAInLity 428 (459)
T KOG0326|consen 372 --------------KCRNLVCTDL----FTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLITY 428 (459)
T ss_pred --------------ccceeeehhh----hhcccccceeeEEEecCCCCCHHHHHHHccCCccCCCcceEEEEEeh
Confidence 8999999999 99999999999999999999999999999999665 5999999974
|
|
| >PRK04837 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.4e-27 Score=200.75 Aligned_cols=122 Identities=20% Similarity=0.291 Sum_probs=107.6
Q ss_pred CcHHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccc
Q 031433 6 TFQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTE 85 (159)
Q Consensus 6 ~~~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~ 85 (159)
...+.+..+|..++. .....++||||++++.++.+++.|+..+ +.+..+||+|++++|.+++++|++|
T Consensus 237 ~~~~~k~~~l~~ll~-~~~~~~~lVF~~t~~~~~~l~~~L~~~g-~~v~~lhg~~~~~~R~~~l~~F~~g---------- 304 (423)
T PRK04837 237 PSNEEKMRLLQTLIE-EEWPDRAIIFANTKHRCEEIWGHLAADG-HRVGLLTGDVAQKKRLRILEEFTRG---------- 304 (423)
T ss_pred CCHHHHHHHHHHHHH-hcCCCeEEEEECCHHHHHHHHHHHHhCC-CcEEEecCCCChhHHHHHHHHHHcC----------
Confidence 334445555555665 4456899999999999999999999988 6999999999999999999999999
Q ss_pred cCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCC--CCeEEEEEE
Q 031433 86 QSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAA--GTSFSDIIL 156 (159)
Q Consensus 86 ~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~--~g~~i~~v~ 156 (159)
+++||||||+ ++||+|+|++++|||||+|.++++|+||+||+||. .|.+++|++
T Consensus 305 -------------~~~vLVaTdv----~~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~ 360 (423)
T PRK04837 305 -------------DLDILVATDV----AARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLAC 360 (423)
T ss_pred -------------CCcEEEEech----hhcCCCccccCEEEEeCCCCchhheEeccccccCCCCCeeEEEEeC
Confidence 8999999999 99999999999999999999999999999999665 578888764
|
|
| >KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.9e-27 Score=193.23 Aligned_cols=119 Identities=22% Similarity=0.368 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccC
Q 031433 8 QETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQS 87 (159)
Q Consensus 8 ~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~ 87 (159)
.-.+..+|...-. + ....++||+|+..+|+.|+..|+..+ +.+..+|+.|++.+|...|.+|+.+
T Consensus 239 daYLv~~Lr~~~~-~-~~~simIFvnttr~cQ~l~~~l~~le-~r~~~lHs~m~Q~eR~~aLsrFrs~------------ 303 (442)
T KOG0340|consen 239 DAYLVHLLRDFEN-K-ENGSIMIFVNTTRECQLLSMTLKNLE-VRVVSLHSQMPQKERLAALSRFRSN------------ 303 (442)
T ss_pred HHHHHHHHhhhhh-c-cCceEEEEeehhHHHHHHHHHHhhhc-eeeeehhhcchHHHHHHHHHHHhhc------------
Confidence 3455666664432 2 56899999999999999999999998 7999999999999999999999998
Q ss_pred CCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcc--cCCCCeEEEEEE
Q 031433 88 GDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LAAGTSFSDIIL 156 (159)
Q Consensus 88 ~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~--~~~~g~~i~~v~ 156 (159)
..+||||||+ ++||+|+|.|++|||||+|++|.+|+||+||+ +++.|.+||||+
T Consensus 304 -----------~~~iliaTDV----AsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt 359 (442)
T KOG0340|consen 304 -----------AARILIATDV----ASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVT 359 (442)
T ss_pred -----------CccEEEEech----hhcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcceEEEec
Confidence 8999999999 99999999999999999999999999999999 677899999986
|
|
| >KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-26 Score=189.61 Aligned_cols=120 Identities=20% Similarity=0.324 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccC
Q 031433 8 QETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQS 87 (159)
Q Consensus 8 ~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~ 87 (159)
.+.+.+.|..++. ...-.+.||||.|++++.+|+..|+..| ..+..+||+|..++|.+++++|+.|
T Consensus 314 ~~~K~~~l~~lyg-~~tigqsiIFc~tk~ta~~l~~~m~~~G-h~V~~l~G~l~~~~R~~ii~~Fr~g------------ 379 (477)
T KOG0332|consen 314 RDDKYQALVNLYG-LLTIGQSIIFCHTKATAMWLYEEMRAEG-HQVSLLHGDLTVEQRAAIIDRFREG------------ 379 (477)
T ss_pred hhhHHHHHHHHHh-hhhhhheEEEEeehhhHHHHHHHHHhcC-ceeEEeeccchhHHHHHHHHHHhcC------------
Confidence 4444555555555 4455889999999999999999999999 5999999999999999999999999
Q ss_pred CCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCC------ChhHHHhhhhcc--cCCCCeEEEEEE
Q 031433 88 GDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPT------KKETYIRRMTTC--LAAGTSFSDIIL 156 (159)
Q Consensus 88 ~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~------~~~~yi~R~GR~--~~~~g~~i~~v~ 156 (159)
..+|||+|++ .+||||++.|++|||||+|- ++++|+||+||+ .++.|.+|+||.
T Consensus 380 -----------~~kVLitTnV----~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~ 441 (477)
T KOG0332|consen 380 -----------KEKVLITTNV----CARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVD 441 (477)
T ss_pred -----------cceEEEEech----hhcccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccceEEEeec
Confidence 8999999999 99999999999999999994 689999999999 556799999873
|
|
| >PRK10590 ATP-dependent RNA helicase RhlE; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.8e-26 Score=195.44 Aligned_cols=122 Identities=19% Similarity=0.293 Sum_probs=109.0
Q ss_pred CcHHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccc
Q 031433 6 TFQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTE 85 (159)
Q Consensus 6 ~~~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~ 85 (159)
...+.+.+++..++. ....+++|||||+++.++.+++.|...+ +.+..+||+|++++|.+++++|++|
T Consensus 227 ~~~~~k~~~l~~l~~-~~~~~~~lVF~~t~~~~~~l~~~L~~~g-~~~~~lhg~~~~~~R~~~l~~F~~g---------- 294 (456)
T PRK10590 227 VDKKRKRELLSQMIG-KGNWQQVLVFTRTKHGANHLAEQLNKDG-IRSAAIHGNKSQGARTRALADFKSG---------- 294 (456)
T ss_pred cCHHHHHHHHHHHHH-cCCCCcEEEEcCcHHHHHHHHHHHHHCC-CCEEEEECCCCHHHHHHHHHHHHcC----------
Confidence 344455667776665 5566899999999999999999999988 7999999999999999999999998
Q ss_pred cCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCC--CCeEEEEEE
Q 031433 86 QSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAA--GTSFSDIIL 156 (159)
Q Consensus 86 ~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~--~g~~i~~v~ 156 (159)
+++||||||+ ++||+|+|+|++|||||+|.++.+|+||+||++|. .|.+++|++
T Consensus 295 -------------~~~iLVaTdv----~~rGiDip~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~ 350 (456)
T PRK10590 295 -------------DIRVLVATDI----AARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVC 350 (456)
T ss_pred -------------CCcEEEEccH----HhcCCCcccCCEEEEeCCCCCHHHhhhhccccccCCCCeeEEEEec
Confidence 8999999999 99999999999999999999999999999999764 578887764
|
|
| >PTZ00110 helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.9e-26 Score=199.30 Aligned_cols=105 Identities=22% Similarity=0.365 Sum_probs=98.8
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEE
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMI 103 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL 103 (159)
.+.++||||++++.++.|++.|+..+ +.+..+||++++++|..++++|++| +.+||
T Consensus 376 ~~~k~LIF~~t~~~a~~l~~~L~~~g-~~~~~ihg~~~~~eR~~il~~F~~G-----------------------~~~IL 431 (545)
T PTZ00110 376 DGDKILIFVETKKGADFLTKELRLDG-WPALCIHGDKKQEERTWVLNEFKTG-----------------------KSPIM 431 (545)
T ss_pred cCCeEEEEecChHHHHHHHHHHHHcC-CcEEEEECCCcHHHHHHHHHHHhcC-----------------------CCcEE
Confidence 56899999999999999999999887 6999999999999999999999998 89999
Q ss_pred EEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCC--CCeEEEEEE
Q 031433 104 VVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAA--GTSFSDIIL 156 (159)
Q Consensus 104 V~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~--~g~~i~~v~ 156 (159)
||||+ ++||||+++|++|||||+|.++++|+||+||+||. .|.+++|++
T Consensus 432 VaTdv----~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~~~ 482 (545)
T PTZ00110 432 IATDV----ASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYTFLT 482 (545)
T ss_pred EEcch----hhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEC
Confidence 99999 99999999999999999999999999999999664 588888764
|
|
| >PRK04537 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.3e-26 Score=198.98 Aligned_cols=120 Identities=19% Similarity=0.322 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccC
Q 031433 8 QETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQS 87 (159)
Q Consensus 8 ~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~ 87 (159)
.+.+..+|..++. ...++++||||||++.++.|++.|.+.+ +.+..+||+|++.+|.++++.|+++
T Consensus 241 ~~~k~~~L~~ll~-~~~~~k~LVF~nt~~~ae~l~~~L~~~g-~~v~~lhg~l~~~eR~~il~~Fr~G------------ 306 (572)
T PRK04537 241 DEEKQTLLLGLLS-RSEGARTMVFVNTKAFVERVARTLERHG-YRVGVLSGDVPQKKRESLLNRFQKG------------ 306 (572)
T ss_pred HHHHHHHHHHHHh-cccCCcEEEEeCCHHHHHHHHHHHHHcC-CCEEEEeCCCCHHHHHHHHHHHHcC------------
Confidence 3444444444555 4567899999999999999999999998 6999999999999999999999998
Q ss_pred CCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccC--CCCeEEEEEE
Q 031433 88 GDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLA--AGTSFSDIIL 156 (159)
Q Consensus 88 ~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~--~~g~~i~~v~ 156 (159)
+++||||||+ ++||||+++|++|||||+|.++++|+||+||++| ..|.+++|++
T Consensus 307 -----------~~~VLVaTdv----~arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~ 362 (572)
T PRK04537 307 -----------QLEILVATDV----AARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFAC 362 (572)
T ss_pred -----------CCeEEEEehh----hhcCCCccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceEEEEec
Confidence 8999999999 9999999999999999999999999999999966 4588888874
|
|
| >PRK11776 ATP-dependent RNA helicase DbpA; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.6e-26 Score=193.78 Aligned_cols=118 Identities=23% Similarity=0.358 Sum_probs=104.9
Q ss_pred HHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCC
Q 031433 10 TLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGD 89 (159)
Q Consensus 10 ~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~ 89 (159)
.+.+.+..++. ...+.++|||||+++.++.+++.|.+.+ +.+..+||+|++++|..+++.|++|
T Consensus 228 ~k~~~l~~ll~-~~~~~~~lVF~~t~~~~~~l~~~L~~~~-~~v~~~hg~~~~~eR~~~l~~F~~g-------------- 291 (460)
T PRK11776 228 ERLPALQRLLL-HHQPESCVVFCNTKKECQEVADALNAQG-FSALALHGDLEQRDRDQVLVRFANR-------------- 291 (460)
T ss_pred HHHHHHHHHHH-hcCCCceEEEECCHHHHHHHHHHHHhCC-CcEEEEeCCCCHHHHHHHHHHHHcC--------------
Confidence 34455555554 4456899999999999999999999998 6999999999999999999999998
Q ss_pred CCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCCC--CeEEEEEE
Q 031433 90 ESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAG--TSFSDIIL 156 (159)
Q Consensus 90 ~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~~--g~~i~~v~ 156 (159)
+.++|||||+ ++||+|+|++++|||||+|.+++.|+||+||+||.+ |.+++|+.
T Consensus 292 ---------~~~vLVaTdv----~~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~ 347 (460)
T PRK11776 292 ---------SCSVLVATDV----AARGLDIKALEAVINYELARDPEVHVHRIGRTGRAGSKGLALSLVA 347 (460)
T ss_pred ---------CCcEEEEecc----cccccchhcCCeEEEecCCCCHhHhhhhcccccCCCCcceEEEEEc
Confidence 8999999999 999999999999999999999999999999997754 77777653
|
|
| >PRK11192 ATP-dependent RNA helicase SrmB; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-25 Score=190.34 Aligned_cols=120 Identities=17% Similarity=0.291 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccC
Q 031433 8 QETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQS 87 (159)
Q Consensus 8 ~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~ 87 (159)
.+.+.++|..++. .....++|||||+++.++.+++.|+..+ +.+..+||+|++++|..++++|++|
T Consensus 229 ~~~k~~~l~~l~~-~~~~~~~lVF~~s~~~~~~l~~~L~~~~-~~~~~l~g~~~~~~R~~~l~~f~~G------------ 294 (434)
T PRK11192 229 LEHKTALLCHLLK-QPEVTRSIVFVRTRERVHELAGWLRKAG-INCCYLEGEMVQAKRNEAIKRLTDG------------ 294 (434)
T ss_pred HHHHHHHHHHHHh-cCCCCeEEEEeCChHHHHHHHHHHHhCC-CCEEEecCCCCHHHHHHHHHHHhCC------------
Confidence 4556677777776 5556899999999999999999999987 7999999999999999999999999
Q ss_pred CCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCC--CCeEEEEEE
Q 031433 88 GDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAA--GTSFSDIIL 156 (159)
Q Consensus 88 ~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~--~g~~i~~v~ 156 (159)
+++||||||+ ++||+|+|++++|||||+|.+...|+||+||+||. .|.+++|+.
T Consensus 295 -----------~~~vLVaTd~----~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~ 350 (434)
T PRK11192 295 -----------RVNVLVATDV----AARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAISLVE 350 (434)
T ss_pred -----------CCcEEEEccc----cccCccCCCCCEEEEECCCCCHHHHhhcccccccCCCCceEEEEec
Confidence 8999999999 99999999999999999999999999999999775 477777763
|
|
| >KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.8e-26 Score=191.35 Aligned_cols=123 Identities=21% Similarity=0.327 Sum_probs=107.1
Q ss_pred CcHHHHHHHHHHHHccC-------CCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhccccc
Q 031433 6 TFQETLVELLHLVVAGR-------RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMK 78 (159)
Q Consensus 6 ~~~~~l~~ll~~l~~~~-------~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~ 78 (159)
.+.++..+|++.+.... ...++++|||++++.+..|+.+|...+ +.+..+||+.++.+|.++++.|+.|
T Consensus 311 ~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~-~~~~sIhg~~tq~er~~al~~Fr~g--- 386 (482)
T KOG0335|consen 311 NEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNG-YPAKSIHGDRTQIEREQALNDFRNG--- 386 (482)
T ss_pred cchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCC-CCceeecchhhhhHHHHHHHHhhcC---
Confidence 34455555665444322 223589999999999999999999998 6999999999999999999999999
Q ss_pred ccccccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhccc--CCCCeEEEEEE
Q 031433 79 WNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCL--AAGTSFSDIIL 156 (159)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~--~~~g~~i~~v~ 156 (159)
+.++||||++ ++||+|+++|+||||||+|.+..+|+|||||+| +++|.+++|+.
T Consensus 387 --------------------~~pvlVaT~V----aaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n 442 (482)
T KOG0335|consen 387 --------------------KAPVLVATNV----AARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFN 442 (482)
T ss_pred --------------------CcceEEEehh----hhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEec
Confidence 8999999999 999999999999999999999999999999994 46699999874
|
|
| >PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.3e-25 Score=193.44 Aligned_cols=106 Identities=21% Similarity=0.309 Sum_probs=97.2
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEE
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMI 103 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL 103 (159)
...++|||||++..++.+++.|....++.+..+||+|++++|..++++|++| +.+||
T Consensus 366 ~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G-----------------------~~~IL 422 (518)
T PLN00206 366 FKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVG-----------------------EVPVI 422 (518)
T ss_pred cCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCC-----------------------CCCEE
Confidence 3468999999999999999999864337999999999999999999999999 89999
Q ss_pred EEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCC--CCeEEEEEE
Q 031433 104 VVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAA--GTSFSDIIL 156 (159)
Q Consensus 104 V~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~--~g~~i~~v~ 156 (159)
||||+ ++||+|+|+|++|||||+|.++.+|+||+||+||. .|.+++|++
T Consensus 423 VaTdv----l~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~ 473 (518)
T PLN00206 423 VATGV----LGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFVN 473 (518)
T ss_pred EEecH----hhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEEEEEc
Confidence 99999 99999999999999999999999999999999775 577887764
|
|
| >PRK01297 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.2e-25 Score=187.88 Aligned_cols=117 Identities=24% Similarity=0.340 Sum_probs=104.7
Q ss_pred HHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCC
Q 031433 10 TLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGD 89 (159)
Q Consensus 10 ~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~ 89 (159)
...+++..++. .....++||||+++++++.+++.|.+.+ +.+..+||++++++|.+++++|++|
T Consensus 321 ~k~~~l~~ll~-~~~~~~~IVF~~s~~~~~~l~~~L~~~~-~~~~~~~g~~~~~~R~~~~~~Fr~G-------------- 384 (475)
T PRK01297 321 DKYKLLYNLVT-QNPWERVMVFANRKDEVRRIEERLVKDG-INAAQLSGDVPQHKRIKTLEGFREG-------------- 384 (475)
T ss_pred hHHHHHHHHHH-hcCCCeEEEEeCCHHHHHHHHHHHHHcC-CCEEEEECCCCHHHHHHHHHHHhCC--------------
Confidence 34455555655 4556799999999999999999999988 6999999999999999999999999
Q ss_pred CCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCCC--CeEEEEE
Q 031433 90 ESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAG--TSFSDII 155 (159)
Q Consensus 90 ~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~~--g~~i~~v 155 (159)
++++|||||+ ++||||++++++|||||+|.++.+|+||+||+||.+ |.+++|+
T Consensus 385 ---------~~~vLvaT~~----l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~ 439 (475)
T PRK01297 385 ---------KIRVLVATDV----AGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFA 439 (475)
T ss_pred ---------CCcEEEEccc----cccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEe
Confidence 8999999999 999999999999999999999999999999997764 6777765
|
|
| >TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.8e-25 Score=187.39 Aligned_cols=116 Identities=24% Similarity=0.399 Sum_probs=101.7
Q ss_pred HHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCC
Q 031433 11 LVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDE 90 (159)
Q Consensus 11 l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~ 90 (159)
+.+++..+.. ..+++++||||+|++.++.+++.|++.+ +.+..+||+|++++|.+++++|++|
T Consensus 213 ~~~l~~~l~~-~~~~~~~IIF~~s~~~~e~la~~L~~~g-~~~~~~H~~l~~~eR~~i~~~F~~g--------------- 275 (470)
T TIGR00614 213 LEDLLRFIRK-EFKGKSGIIYCPSRKKSEQVTASLQNLG-IAAGAYHAGLEISARDDVHHKFQRD--------------- 275 (470)
T ss_pred HHHHHHHHHH-hcCCCceEEEECcHHHHHHHHHHHHhcC-CCeeEeeCCCCHHHHHHHHHHHHcC---------------
Confidence 3445544433 4456788999999999999999999998 7999999999999999999999998
Q ss_pred CCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCCC--CeEEEEE
Q 031433 91 SETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAG--TSFSDII 155 (159)
Q Consensus 91 ~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~~--g~~i~~v 155 (159)
+++|||||++ +++|+|+|+|++|||||+|.+++.|+||+||+||.+ |.++.|.
T Consensus 276 --------~~~vLVaT~~----~~~GID~p~V~~VI~~~~P~s~~~y~Qr~GRaGR~G~~~~~~~~~ 330 (470)
T TIGR00614 276 --------EIQVVVATVA----FGMGINKPDVRFVIHYSLPKSMESYYQESGRAGRDGLPSECHLFY 330 (470)
T ss_pred --------CCcEEEEech----hhccCCcccceEEEEeCCCCCHHHHHhhhcCcCCCCCCceEEEEe
Confidence 8999999999 999999999999999999999999999999998765 5555543
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK11634 ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-24 Score=192.43 Aligned_cols=113 Identities=18% Similarity=0.288 Sum_probs=101.3
Q ss_pred HHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCC
Q 031433 15 LHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETG 94 (159)
Q Consensus 15 l~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~ 94 (159)
|..++. .....++||||+|+..++.|++.|...+ +.+..+||+|++.+|.+++++|+.|
T Consensus 236 L~~~L~-~~~~~~~IVF~~tk~~a~~l~~~L~~~g-~~~~~lhgd~~q~~R~~il~~Fr~G------------------- 294 (629)
T PRK11634 236 LVRFLE-AEDFDAAIIFVRTKNATLEVAEALERNG-YNSAALNGDMNQALREQTLERLKDG------------------- 294 (629)
T ss_pred HHHHHH-hcCCCCEEEEeccHHHHHHHHHHHHhCC-CCEEEeeCCCCHHHHHHHHHHHhCC-------------------
Confidence 333443 3445799999999999999999999998 6999999999999999999999998
Q ss_pred CCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCCC--CeEEEEEE
Q 031433 95 KDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAG--TSFSDIIL 156 (159)
Q Consensus 95 ~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~~--g~~i~~v~ 156 (159)
+++||||||+ ++||||+|+|++|||||+|.++++|+||+||++|.+ |.++.|+.
T Consensus 295 ----~~~ILVATdv----~arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~ 350 (629)
T PRK11634 295 ----RLDILIATDV----AARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVE 350 (629)
T ss_pred ----CCCEEEEcch----HhcCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCCcceEEEEec
Confidence 8999999999 999999999999999999999999999999997654 77777763
|
|
| >KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.2e-25 Score=182.36 Aligned_cols=121 Identities=22% Similarity=0.334 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccC
Q 031433 8 QETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQS 87 (159)
Q Consensus 8 ~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~ 87 (159)
...+.++.+.+.+...+..|+||||.++..++.|+.-|.-.| +.+..|||+-++.+|+..++.|+.|
T Consensus 448 d~~k~~~~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~g-i~~q~lHG~r~Q~DrE~al~~~ksG------------ 514 (629)
T KOG0336|consen 448 DSEKLEIVQFFVANMSSNDKVIIFVSRKVMADHLSSDFCLKG-ISSQSLHGNREQSDREMALEDFKSG------------ 514 (629)
T ss_pred cHHHHHHHHHHHHhcCCCceEEEEEechhhhhhccchhhhcc-cchhhccCChhhhhHHHHHHhhhcC------------
Confidence 345567888788777788999999999999999999998888 8999999999999999999999999
Q ss_pred CCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccC--CCCeEEEEEE
Q 031433 88 GDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLA--AGTSFSDIIL 156 (159)
Q Consensus 88 ~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~--~~g~~i~~v~ 156 (159)
.++|||+||+ ++||+|++++.||+|||+|.+++.|+||+||+|| +.|.+++|++
T Consensus 515 -----------~vrILvaTDl----aSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~sis~lt 570 (629)
T KOG0336|consen 515 -----------EVRILVATDL----ASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGTSISFLT 570 (629)
T ss_pred -----------ceEEEEEech----hhcCCCchhcceeeccCCCccHHHHHHHhcccccCCCCcceEEEEe
Confidence 8999999999 9999999999999999999999999999999955 5588888875
|
|
| >KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.2e-25 Score=181.81 Aligned_cols=121 Identities=21% Similarity=0.356 Sum_probs=108.2
Q ss_pred cCcH-HHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccc
Q 031433 5 FTFQ-ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKV 83 (159)
Q Consensus 5 ~~~~-~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~ 83 (159)
|+++ .+++.||+-+.+ ...+++|||..+..++.+.++|--+| +.++.+||+.++++|...++.|+.|
T Consensus 403 yVkqEaKiVylLeCLQK---T~PpVLIFaEkK~DVD~IhEYLLlKG-VEavaIHGGKDQedR~~ai~afr~g-------- 470 (610)
T KOG0341|consen 403 YVKQEAKIVYLLECLQK---TSPPVLIFAEKKADVDDIHEYLLLKG-VEAVAIHGGKDQEDRHYAIEAFRAG-------- 470 (610)
T ss_pred HHHhhhhhhhHHHHhcc---CCCceEEEeccccChHHHHHHHHHcc-ceeEEeecCcchhHHHHHHHHHhcC--------
Confidence 4443 456678887754 45799999999999999999999998 8999999999999999999999999
Q ss_pred cccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCC--CCeEEEEEE
Q 031433 84 TEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAA--GTSFSDIIL 156 (159)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~--~g~~i~~v~ 156 (159)
+-.|||+||+ ++.|+|||++.||||||+|..++.|+||+||+||. .|.+..|+.
T Consensus 471 ---------------kKDVLVATDV----ASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATTfIN 526 (610)
T KOG0341|consen 471 ---------------KKDVLVATDV----ASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATTFIN 526 (610)
T ss_pred ---------------CCceEEEecc----hhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcceeeeeec
Confidence 8999999999 99999999999999999999999999999999665 588887763
|
|
| >KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.9e-25 Score=184.27 Aligned_cols=112 Identities=19% Similarity=0.289 Sum_probs=100.4
Q ss_pred HHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCC
Q 031433 17 LVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKD 96 (159)
Q Consensus 17 ~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~ 96 (159)
.+++.....+|+||||.|...+.++++.|+... +.+.-+||++++..|..+..+|++.
T Consensus 322 ~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~d-lpv~eiHgk~~Q~kRT~~~~~F~ka--------------------- 379 (543)
T KOG0342|consen 322 TFLKKNIKRYKIIVFFSTCMSVKFHAELLNYID-LPVLEIHGKQKQNKRTSTFFEFCKA--------------------- 379 (543)
T ss_pred HHHHHhcCCceEEEEechhhHHHHHHHHHhhcC-CchhhhhcCCcccccchHHHHHhhc---------------------
Confidence 355424444999999999999999999999886 8999999999999999999999998
Q ss_pred CCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCCCCeEEEEEE
Q 031433 97 EHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAGTSFSDIIL 156 (159)
Q Consensus 97 ~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~~g~~i~~v~ 156 (159)
+.-||+|||+ ++||+|+|+|++||+||+|.++++||||+||++|.++.+-+++.
T Consensus 380 --esgIL~cTDV----aARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~ 433 (543)
T KOG0342|consen 380 --ESGILVCTDV----AARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLL 433 (543)
T ss_pred --ccceEEecch----hhccCCCCCceEEEEeCCCCCHHHHHHHhccccccCCCceEEEE
Confidence 8999999999 99999999999999999999999999999999887755555443
|
|
| >PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.5e-24 Score=195.52 Aligned_cols=106 Identities=18% Similarity=0.250 Sum_probs=98.1
Q ss_pred CCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCcee
Q 031433 22 RRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSH 101 (159)
Q Consensus 22 ~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (159)
...+.+.||||++++.++.+++.|+..| +.+..+||+|++++|..++++|+.| +++
T Consensus 677 ~~~~esgIIYC~SRke~E~LAe~L~~~G-ika~~YHAGLs~eeR~~vqe~F~~G-----------------------ei~ 732 (1195)
T PLN03137 677 NHFDECGIIYCLSRMDCEKVAERLQEFG-HKAAFYHGSMDPAQRAFVQKQWSKD-----------------------EIN 732 (1195)
T ss_pred cccCCCceeEeCchhHHHHHHHHHHHCC-CCeeeeeCCCCHHHHHHHHHHHhcC-----------------------CCc
Confidence 4446789999999999999999999998 7999999999999999999999999 899
Q ss_pred EEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCCC--CeEEEEE
Q 031433 102 MIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAG--TSFSDII 155 (159)
Q Consensus 102 vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~~--g~~i~~v 155 (159)
|||||++ ++||||+|+|++|||||+|.+++.|+||+||+||.+ |.++.|.
T Consensus 733 VLVATdA----FGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILly 784 (1195)
T PLN03137 733 IICATVA----FGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYY 784 (1195)
T ss_pred EEEEech----hhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEe
Confidence 9999999 999999999999999999999999999999998876 5555554
|
|
| >PTZ00424 helicase 45; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.3e-24 Score=177.80 Aligned_cols=118 Identities=24% Similarity=0.419 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCC
Q 031433 9 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSG 88 (159)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~ 88 (159)
+...+.+..+.. .....++||||++++.++.+++.|++.+ +.+..+||+|++++|..+++.|++|
T Consensus 252 ~~~~~~l~~~~~-~~~~~~~ivF~~t~~~~~~l~~~l~~~~-~~~~~~h~~~~~~~R~~i~~~f~~g------------- 316 (401)
T PTZ00424 252 EWKFDTLCDLYE-TLTITQAIIYCNTRRKVDYLTKKMHERD-FTVSCMHGDMDQKDRDLIMREFRSG------------- 316 (401)
T ss_pred HHHHHHHHHHHH-hcCCCeEEEEecCcHHHHHHHHHHHHCC-CcEEEEeCCCCHHHHHHHHHHHHcC-------------
Confidence 334444444544 4456789999999999999999999987 6999999999999999999999998
Q ss_pred CCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCC--CCeEEEEE
Q 031433 89 DESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAA--GTSFSDII 155 (159)
Q Consensus 89 ~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~--~g~~i~~v 155 (159)
+++|||||++ +++|+|+|++++||+||+|.+...|+||+||+||. .|.++.|+
T Consensus 317 ----------~~~vLvaT~~----l~~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~G~~i~l~ 371 (401)
T PTZ00424 317 ----------STRVLITTDL----LARGIDVQQVSLVINYDLPASPENYIHRIGRSGRFGRKGVAINFV 371 (401)
T ss_pred ----------CCCEEEEccc----ccCCcCcccCCEEEEECCCCCHHHEeecccccccCCCCceEEEEE
Confidence 8999999999 99999999999999999999999999999999775 47777765
|
|
| >PRK11057 ATP-dependent DNA helicase RecQ; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.4e-24 Score=186.40 Aligned_cols=106 Identities=20% Similarity=0.368 Sum_probs=98.2
Q ss_pred CCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCcee
Q 031433 22 RRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSH 101 (159)
Q Consensus 22 ~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (159)
...++++||||+|++.++.+++.|++.+ +.+..+||+|++++|.++++.|+.+ +++
T Consensus 233 ~~~~~~~IIFc~tr~~~e~la~~L~~~g-~~v~~~Ha~l~~~~R~~i~~~F~~g-----------------------~~~ 288 (607)
T PRK11057 233 EQRGKSGIIYCNSRAKVEDTAARLQSRG-ISAAAYHAGLDNDVRADVQEAFQRD-----------------------DLQ 288 (607)
T ss_pred hcCCCCEEEEECcHHHHHHHHHHHHhCC-CCEEEecCCCCHHHHHHHHHHHHCC-----------------------CCC
Confidence 3456899999999999999999999998 7999999999999999999999998 899
Q ss_pred EEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCCC--CeEEEEE
Q 031433 102 MIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAG--TSFSDII 155 (159)
Q Consensus 102 vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~~--g~~i~~v 155 (159)
|||||++ +++|||+|+|++|||||+|.+.++|+||+||+||.+ |.++.|+
T Consensus 289 VLVaT~a----~~~GIDip~V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~ill~ 340 (607)
T PRK11057 289 IVVATVA----FGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFY 340 (607)
T ss_pred EEEEech----hhccCCCCCcCEEEEeCCCCCHHHHHHHhhhccCCCCCceEEEEe
Confidence 9999999 999999999999999999999999999999998865 5555554
|
|
| >KOG0343 consensus RNA Helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.6e-24 Score=180.74 Aligned_cols=127 Identities=18% Similarity=0.270 Sum_probs=112.8
Q ss_pred eecCcHHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcC-CCccEEEeecCCCHHHHHHHHHHHhcccccccc
Q 031433 3 VSFTFQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL-ADISFSSLHSDLAETERTLILEEFRHTAMKWNQ 81 (159)
Q Consensus 3 v~~~~~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~-~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~ 81 (159)
++.++.+.++.+|..+.+ .+..+|.|||..|++.+.++++.+.+. +++....|||.|.+..|..++++|.+.
T Consensus 292 y~~v~l~~Ki~~L~sFI~-shlk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~------ 364 (758)
T KOG0343|consen 292 YVIVPLEDKIDMLWSFIK-SHLKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRK------ 364 (758)
T ss_pred EEEEehhhHHHHHHHHHH-hccccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHh------
Confidence 445567778888887887 777899999999999999999999986 448999999999999999999999997
Q ss_pred cccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCCCCeEEEEEEe
Q 031433 82 KVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAGTSFSDIILL 157 (159)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~~g~~i~~v~~ 157 (159)
+.-||+|||+ ++||+|||.|++||+||.|.++++|+||+||++|.+..+-+++.|
T Consensus 365 -----------------~~~vLF~TDv----~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L 419 (758)
T KOG0343|consen 365 -----------------RAVVLFCTDV----AARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLML 419 (758)
T ss_pred -----------------cceEEEeehh----hhccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEE
Confidence 7889999999 999999999999999999999999999999998776555555544
|
|
| >TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.8e-23 Score=186.78 Aligned_cols=114 Identities=16% Similarity=0.182 Sum_probs=99.5
Q ss_pred HHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcC--------CCccEEEeecCCCHHHHHHHHHHHhcccccccc
Q 031433 10 TLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL--------ADISFSSLHSDLAETERTLILEEFRHTAMKWNQ 81 (159)
Q Consensus 10 ~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~--------~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~ 81 (159)
...+++..+.. .+.++||||||++.++.+++.|++. + ..+..+||++++++|.+++++|++|
T Consensus 259 ~~~~~l~~l~~---~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~-~~v~~~hgg~~~~eR~~ie~~f~~G------ 328 (742)
T TIGR03817 259 EAADLLADLVA---EGARTLTFVRSRRGAELVAAIARRLLGEVDPDLA-ERVAAYRAGYLPEDRRELERALRDG------ 328 (742)
T ss_pred HHHHHHHHHHH---CCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccc-cchhheecCCCHHHHHHHHHHHHcC------
Confidence 34456665654 2579999999999999999998763 3 4788999999999999999999999
Q ss_pred cccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCCC--CeEEEE
Q 031433 82 KVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAG--TSFSDI 154 (159)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~~--g~~i~~ 154 (159)
++++|||||+ ++||||++++++|||||+|.+.++|+||+||+||.+ |.++.+
T Consensus 329 -----------------~i~vLVaTd~----lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v 382 (742)
T TIGR03817 329 -----------------ELLGVATTNA----LELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLV 382 (742)
T ss_pred -----------------CceEEEECch----HhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEE
Confidence 8999999999 999999999999999999999999999999998765 555544
|
A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA. |
| >KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.2e-23 Score=174.41 Aligned_cols=120 Identities=18% Similarity=0.303 Sum_probs=105.3
Q ss_pred cHHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcC-CCccEEEeecCCCHHHHHHHHHHHhcccccccccccc
Q 031433 7 FQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL-ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTE 85 (159)
Q Consensus 7 ~~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~-~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~ 85 (159)
+.+++..+++.+ . ....+|+|||..|...+++....|... +...+..+||.|.+.+|.+++++|++.
T Consensus 239 a~eK~~~lv~~L-~-~~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~---------- 306 (567)
T KOG0345|consen 239 ADEKLSQLVHLL-N-NNKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKL---------- 306 (567)
T ss_pred HHHHHHHHHHHH-h-ccccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhc----------
Confidence 445666666644 3 466799999999999999999999876 557999999999999999999999996
Q ss_pred cCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccC--CCCeEEEEE
Q 031433 86 QSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLA--AGTSFSDII 155 (159)
Q Consensus 86 ~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~--~~g~~i~~v 155 (159)
+-.+|+|||+ ++||||+|+|++||+||+|.+++.|+||+||++| +.|.+|.|+
T Consensus 307 -------------~~~vl~~TDV----aARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl 361 (567)
T KOG0345|consen 307 -------------SNGVLFCTDV----AARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFL 361 (567)
T ss_pred -------------cCceEEeehh----hhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEe
Confidence 7889999999 9999999999999999999999999999999955 457777765
|
|
| >KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3e-23 Score=170.73 Aligned_cols=104 Identities=24% Similarity=0.527 Sum_probs=99.5
Q ss_pred CCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEEE
Q 031433 25 GLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIV 104 (159)
Q Consensus 25 ~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLV 104 (159)
-.+.+||||+++.+..+..+|...+ ..+..+|++|++.+|..++.+|+.| ..+|||
T Consensus 263 ~~q~~if~nt~r~v~~l~~~L~~~~-~~~s~~~~d~~q~~R~~~~~ef~~g-----------------------ssrvlI 318 (397)
T KOG0327|consen 263 VTQAVIFCNTRRKVDNLTDKLRAHG-FTVSAIHGDMEQNERDTLMREFRSG-----------------------SSRVLI 318 (397)
T ss_pred hhcceEEecchhhHHHHHHHHhhCC-ceEEEeecccchhhhhHHHHHhhcC-----------------------CceEEe
Confidence 4789999999999999999998888 6999999999999999999999999 899999
Q ss_pred EecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcc--cCCCCeEEEEEE
Q 031433 105 VTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LAAGTSFSDIIL 156 (159)
Q Consensus 105 ~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~--~~~~g~~i~~v~ 156 (159)
+||+ ++||+|+.+++.|||||+|.+.++|+||+||+ .+++|.+++|++
T Consensus 319 ttdl----~argidv~~~slvinydlP~~~~~yihR~gr~gr~grkg~~in~v~ 368 (397)
T KOG0327|consen 319 TTDL----LARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRKGVAINFVT 368 (397)
T ss_pred eccc----cccccchhhcceeeeeccccchhhhhhhcccccccCCCceeeeeeh
Confidence 9999 99999999999999999999999999999999 667899999985
|
|
| >KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.9e-23 Score=176.21 Aligned_cols=105 Identities=20% Similarity=0.313 Sum_probs=98.5
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEE
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMI 103 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL 103 (159)
...++|||+.|++.+..+.=.|.-.| +++.-|||.+++++|...++.|+.. ++.+|
T Consensus 425 f~~~~ivFv~tKk~AHRl~IllGLlg-l~agElHGsLtQ~QRlesL~kFk~~-----------------------eidvL 480 (691)
T KOG0338|consen 425 FQDRTIVFVRTKKQAHRLRILLGLLG-LKAGELHGSLTQEQRLESLEKFKKE-----------------------EIDVL 480 (691)
T ss_pred cccceEEEEehHHHHHHHHHHHHHhh-chhhhhcccccHHHHHHHHHHHHhc-----------------------cCCEE
Confidence 35899999999999999988888888 8999999999999999999999998 99999
Q ss_pred EEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcc--cCCCCeEEEEEE
Q 031433 104 VVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LAAGTSFSDIIL 156 (159)
Q Consensus 104 V~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~--~~~~g~~i~~v~ 156 (159)
||||+ ++||+|+++|..||||++|.+.+.|+||+||+ +++.|.+++|+.
T Consensus 481 iaTDv----AsRGLDI~gV~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvg 531 (691)
T KOG0338|consen 481 IATDV----ASRGLDIEGVQTVINYAMPKTIEHYLHRVGRTARAGRAGRSVTLVG 531 (691)
T ss_pred EEech----hhccCCccceeEEEeccCchhHHHHHHHhhhhhhcccCcceEEEec
Confidence 99999 99999999999999999999999999999999 556688888874
|
|
| >KOG0347 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-23 Score=180.03 Aligned_cols=105 Identities=24% Similarity=0.375 Sum_probs=96.7
Q ss_pred CCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCcee
Q 031433 22 RRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSH 101 (159)
Q Consensus 22 ~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (159)
...+.++|||||+.+.+..|+-+|+..+ +....||+.|.+.+|.+.|++|++. ...
T Consensus 460 ~ryPGrTlVF~NsId~vKRLt~~L~~L~-i~p~~LHA~M~QKqRLknLEkF~~~-----------------------~~~ 515 (731)
T KOG0347|consen 460 TRYPGRTLVFCNSIDCVKRLTVLLNNLD-IPPLPLHASMIQKQRLKNLEKFKQS-----------------------PSG 515 (731)
T ss_pred eecCCceEEEechHHHHHHHHHHHhhcC-CCCchhhHHHHHHHHHHhHHHHhcC-----------------------CCe
Confidence 4456899999999999999999999998 8999999999999999999999997 788
Q ss_pred EEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCCCCeEEEE
Q 031433 102 MIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAGTSFSDI 154 (159)
Q Consensus 102 vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~~g~~i~~ 154 (159)
||||||+ ++||+|+|+|.|||||.+|.+.+.|+||.||++|.+..++++
T Consensus 516 VLiaTDV----AARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsv 564 (731)
T KOG0347|consen 516 VLIATDV----AARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSV 564 (731)
T ss_pred EEEeehh----hhccCCCCCcceEEEeecCCccceeEecccccccccCCCeEE
Confidence 9999999 999999999999999999999999999999997766444443
|
|
| >TIGR01389 recQ ATP-dependent DNA helicase RecQ | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-22 Score=178.60 Aligned_cols=102 Identities=23% Similarity=0.340 Sum_probs=95.3
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEE
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMI 103 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL 103 (159)
.+.++||||+|++.++.+++.|...+ +.+..+||+|+.++|..++++|++| +++||
T Consensus 223 ~~~~~IIf~~sr~~~e~la~~L~~~g-~~~~~~H~~l~~~~R~~i~~~F~~g-----------------------~~~vl 278 (591)
T TIGR01389 223 RGQSGIIYASSRKKVEELAERLESQG-ISALAYHAGLSNKVRAENQEDFLYD-----------------------DVKVM 278 (591)
T ss_pred CCCCEEEEECcHHHHHHHHHHHHhCC-CCEEEEECCCCHHHHHHHHHHHHcC-----------------------CCcEE
Confidence 36899999999999999999999988 7999999999999999999999998 89999
Q ss_pred EEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCCC--CeEEE
Q 031433 104 VVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAG--TSFSD 153 (159)
Q Consensus 104 V~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~~--g~~i~ 153 (159)
|||++ +++|+|+|+|++|||||+|.+.+.|+||+||+||.+ +.++.
T Consensus 279 VaT~a----~~~GID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR~G~~~~~il 326 (591)
T TIGR01389 279 VATNA----FGMGIDKPNVRFVIHYDMPGNLESYYQEAGRAGRDGLPAEAIL 326 (591)
T ss_pred EEech----hhccCcCCCCCEEEEcCCCCCHHHHhhhhccccCCCCCceEEE
Confidence 99999 999999999999999999999999999999998866 44443
|
The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ. |
| >KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-22 Score=173.62 Aligned_cols=119 Identities=20% Similarity=0.348 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCC
Q 031433 9 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSG 88 (159)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~ 88 (159)
.+++.+.+ +.. .....+++||+.+.+++.+|.+.|.....+++.++||+.++.+|..++++|+.|
T Consensus 373 ~K~lA~rq-~v~-~g~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g------------- 437 (593)
T KOG0344|consen 373 GKLLALRQ-LVA-SGFKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIG------------- 437 (593)
T ss_pred hHHHHHHH-HHh-ccCCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhcc-------------
Confidence 34444444 444 445689999999999999999999544448999999999999999999999999
Q ss_pred CCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccC--CCCeEEEEEE
Q 031433 89 DESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLA--AGTSFSDIIL 156 (159)
Q Consensus 89 ~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~--~~g~~i~~v~ 156 (159)
++.+|||||+ ++||+||.+|++|||||+|.+..+|+||+||+|| ++|.|+.|.+
T Consensus 438 ----------~IwvLicTdl----l~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfyt 493 (593)
T KOG0344|consen 438 ----------KIWVLICTDL----LARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYT 493 (593)
T ss_pred ----------CeeEEEehhh----hhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEec
Confidence 8999999999 9999999999999999999999999999999955 5699999864
|
|
| >PRK04914 ATP-dependent helicase HepA; Validated | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.7e-22 Score=183.38 Aligned_cols=117 Identities=16% Similarity=0.185 Sum_probs=97.8
Q ss_pred HHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCC
Q 031433 12 VELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDES 91 (159)
Q Consensus 12 ~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~ 91 (159)
.+.|..++. ...+.|+||||+++++++.+.+.|+...++.+..+||+|++.+|.++++.|+++
T Consensus 481 i~~L~~~L~-~~~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~---------------- 543 (956)
T PRK04914 481 VEWLIDFLK-SHRSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADE---------------- 543 (956)
T ss_pred HHHHHHHHH-hcCCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcC----------------
Confidence 333333444 444789999999999999999999654237999999999999999999999985
Q ss_pred CCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCC--CCeEEEE
Q 031433 92 ETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAA--GTSFSDI 154 (159)
Q Consensus 92 ~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~--~g~~i~~ 154 (159)
++..+|||||++ +++|+|++.+++|||||+||+++.|.||+||++|. .+.+..+
T Consensus 544 -----~~~~~VLIsTdv----gseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~ 599 (956)
T PRK04914 544 -----EDGAQVLLCSEI----GSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIH 599 (956)
T ss_pred -----CCCccEEEechh----hccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEE
Confidence 125899999999 99999999999999999999999999999999554 3444433
|
|
| >KOG0346 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.1e-23 Score=171.34 Aligned_cols=142 Identities=15% Similarity=0.203 Sum_probs=107.4
Q ss_pred cHHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhccccccccccccc
Q 031433 7 FQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQ 86 (159)
Q Consensus 7 ~~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~ 86 (159)
.+|+++-++ .+++...-..|.|||+||.+.+-.|--.|...| ++...|+|+|+...|.+++++|.+|.+++..+...+
T Consensus 251 e~DKfllly-allKL~LI~gKsliFVNtIdr~YrLkLfLeqFG-iksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s 328 (569)
T KOG0346|consen 251 EEDKFLLLY-ALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFG-IKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDS 328 (569)
T ss_pred cchhHHHHH-HHHHHHHhcCceEEEEechhhhHHHHHHHHHhC-cHhhhhcccccccchhhHHHHhhCcceeEEEEccCc
Confidence 445544433 355545556899999999999999999999998 899999999999999999999999988776554311
Q ss_pred C----------CCCC----CCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcc--cCCCCe
Q 031433 87 S----------GDES----ETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LAAGTS 150 (159)
Q Consensus 87 ~----------~~~~----~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~--~~~~g~ 150 (159)
. |..+ +++..+++ -.--+.+ .+|||||+.|+.|||||+|.++..|+||+||+ +.++|.
T Consensus 329 ~~~~~~eee~kgk~~e~~~kndkkskk---K~D~E~G---VsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~Gt 402 (569)
T KOG0346|consen 329 ADGDKLEEEVKGKSDEKNPKNDKKSKK---KLDKESG---VSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGT 402 (569)
T ss_pred cchhhhhccccccccccCCCCcccccc---ccCchhc---hhccccchheeeeeecCCCCchHHHHHhccccccCCCCCc
Confidence 0 1111 11111111 1111222 79999999999999999999999999999999 667899
Q ss_pred EEEEEE
Q 031433 151 FSDIIL 156 (159)
Q Consensus 151 ~i~~v~ 156 (159)
++|||+
T Consensus 403 alSfv~ 408 (569)
T KOG0346|consen 403 ALSFVS 408 (569)
T ss_pred eEEEec
Confidence 999985
|
|
| >COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-21 Score=166.21 Aligned_cols=126 Identities=17% Similarity=0.224 Sum_probs=111.5
Q ss_pred ceecCcHHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEE--Eee-------cCCCHHHHHHHHHHH
Q 031433 2 SVSFTFQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFS--SLH-------SDLAETERTLILEEF 72 (159)
Q Consensus 2 ~v~~~~~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~--~l~-------~~~~~~~R~~~l~~F 72 (159)
.+-.++++.+.+++...++ .+.+.++|||++.+++++.+.++|.+.+ +.+. ++- .||++.++.+++++|
T Consensus 344 ~v~HPKl~~l~eilke~~~-k~~~~RvIVFT~yRdTae~i~~~L~~~~-~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~F 421 (542)
T COG1111 344 GVEHPKLEKLREILKEQLE-KNGDSRVIVFTEYRDTAEEIVNFLKKIG-IKARVRFIGQASREGDKGMSQKEQKEIIDQF 421 (542)
T ss_pred cCCCccHHHHHHHHHHHHh-cCCCceEEEEehhHhHHHHHHHHHHhcC-CcceeEEeeccccccccccCHHHHHHHHHHH
Confidence 3557889999999998887 6667999999999999999999999987 4553 222 469999999999999
Q ss_pred hcccccccccccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCC-CCeE
Q 031433 73 RHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAA-GTSF 151 (159)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~-~g~~ 151 (159)
++| ..+|||||++ +++|+|+|++++||.||+-.|+..++||.||+||. +|.+
T Consensus 422 r~G-----------------------e~nVLVaTSV----gEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~r~Grv 474 (542)
T COG1111 422 RKG-----------------------EYNVLVATSV----GEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRKRKGRV 474 (542)
T ss_pred hcC-----------------------CceEEEEccc----ccccCCCCcccEEEEecCCcHHHHHHHhhCccccCCCCeE
Confidence 999 8999999999 99999999999999999999999999999999775 5888
Q ss_pred EEEEE
Q 031433 152 SDIIL 156 (159)
Q Consensus 152 i~~v~ 156 (159)
+.+++
T Consensus 475 ~vLvt 479 (542)
T COG1111 475 VVLVT 479 (542)
T ss_pred EEEEe
Confidence 77664
|
|
| >PRK13767 ATP-dependent helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.2e-21 Score=177.24 Aligned_cols=98 Identities=12% Similarity=0.146 Sum_probs=91.0
Q ss_pred CCcEEEEeCchHHHHHHHHHHhcCC-----CccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCc
Q 031433 25 GLPMIVCCSSRDELDAVCSAVSNLA-----DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHK 99 (159)
Q Consensus 25 ~~k~iIF~ns~~~~~~l~~~L~~~~-----~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (159)
.+++||||||++.++.+++.|++.. ...+..+||+|++++|..++++|++| +
T Consensus 284 ~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G-----------------------~ 340 (876)
T PRK13767 284 HRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKRG-----------------------E 340 (876)
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHcC-----------------------C
Confidence 5799999999999999999998731 14799999999999999999999999 8
Q ss_pred eeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCCCC
Q 031433 100 SHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAGT 149 (159)
Q Consensus 100 ~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~~g 149 (159)
+++||||+. +++|||++++++||+|+.|.++.+|+||+||+||+.|
T Consensus 341 i~vLVaTs~----Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g 386 (876)
T PRK13767 341 LKVVVSSTS----LELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLG 386 (876)
T ss_pred CeEEEECCh----HHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCC
Confidence 999999999 9999999999999999999999999999999987753
|
|
| >KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2e-21 Score=165.76 Aligned_cols=117 Identities=24% Similarity=0.357 Sum_probs=97.8
Q ss_pred HHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcC---------------------CCccEEEeecCCCHHHHHHHH
Q 031433 11 LVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL---------------------ADISFSSLHSDLAETERTLIL 69 (159)
Q Consensus 11 l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~---------------------~~i~~~~l~~~~~~~~R~~~l 69 (159)
|..+|....+ .....|+|||..+.+.+++=++.|+.. -..+++-|||+|++++|..++
T Consensus 412 Laa~L~~~~k-~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f 490 (708)
T KOG0348|consen 412 LAALLLNKVK-FEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVF 490 (708)
T ss_pred HHHHHHHHhh-hhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHH
Confidence 3344554555 445679999999999999877777643 024789999999999999999
Q ss_pred HHHhcccccccccccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccC--C
Q 031433 70 EEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLA--A 147 (159)
Q Consensus 70 ~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~--~ 147 (159)
+.|... .-.||+|||+ ++||+|+|+|.+||.||.|.++.+|+||+||++| .
T Consensus 491 ~~Fs~~-----------------------~~~VLLcTDV----AaRGLDlP~V~~vVQYd~P~s~adylHRvGRTARaG~ 543 (708)
T KOG0348|consen 491 QEFSHS-----------------------RRAVLLCTDV----AARGLDLPHVGLVVQYDPPFSTADYLHRVGRTARAGE 543 (708)
T ss_pred Hhhccc-----------------------cceEEEehhh----hhccCCCCCcCeEEEeCCCCCHHHHHHHhhhhhhccC
Confidence 999997 5669999999 9999999999999999999999999999999955 4
Q ss_pred CCeEEEEE
Q 031433 148 GTSFSDII 155 (159)
Q Consensus 148 ~g~~i~~v 155 (159)
.|.++.|+
T Consensus 544 kG~alLfL 551 (708)
T KOG0348|consen 544 KGEALLFL 551 (708)
T ss_pred CCceEEEe
Confidence 57776665
|
|
| >PRK12898 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.6e-21 Score=169.92 Aligned_cols=123 Identities=14% Similarity=0.144 Sum_probs=97.4
Q ss_pred cCcHHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhccccccccccc
Q 031433 5 FTFQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVT 84 (159)
Q Consensus 5 ~~~~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~ 84 (159)
.+..++...|.+.+......+.++||||+|++.++.+++.|.+.| +.+..|||++.+ |.+.+..|..+
T Consensus 453 ~t~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se~L~~~L~~~g-i~~~~Lhg~~~~--rE~~ii~~ag~--------- 520 (656)
T PRK12898 453 LTAAAKWAAVAARVRELHAQGRPVLVGTRSVAASERLSALLREAG-LPHQVLNAKQDA--EEAAIVARAGQ--------- 520 (656)
T ss_pred eCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCC-CCEEEeeCCcHH--HHHHHHHHcCC---------
Confidence 334445445554433323346789999999999999999999998 799999998654 45555566655
Q ss_pred ccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCC---CCC-----eEEEccCCCChhHHHhhhhcccCCC--CeEEEE
Q 031433 85 EQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAI---SAR-----VLINYELPTKKETYIRRMTTCLAAG--TSFSDI 154 (159)
Q Consensus 85 ~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~---~v~-----~VI~~d~P~~~~~yi~R~GR~~~~~--g~~i~~ 154 (159)
+..|+||||+ ++||+|++ +|. +|||||+|.+...|.||+||+||.+ |.+++|
T Consensus 521 --------------~g~VlVATdm----AgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s~~~ 582 (656)
T PRK12898 521 --------------RGRITVATNM----AGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSYEAI 582 (656)
T ss_pred --------------CCcEEEEccc----hhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCCeEEEEE
Confidence 5679999999 99999999 676 9999999999999999999997655 888887
Q ss_pred EEe
Q 031433 155 ILL 157 (159)
Q Consensus 155 v~~ 157 (159)
+++
T Consensus 583 is~ 585 (656)
T PRK12898 583 LSL 585 (656)
T ss_pred ech
Confidence 763
|
|
| >COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.7e-21 Score=167.62 Aligned_cols=108 Identities=22% Similarity=0.385 Sum_probs=100.6
Q ss_pred CCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCcee
Q 031433 22 RRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSH 101 (159)
Q Consensus 22 ~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (159)
.......||||.|++.++.++++|+..| +.+..+|++|+.++|..+.++|..+ +.+
T Consensus 227 ~~~~~~GIIYc~sRk~~E~ia~~L~~~g-~~a~~YHaGl~~~eR~~~q~~f~~~-----------------------~~~ 282 (590)
T COG0514 227 PQLSKSGIIYCLTRKKVEELAEWLRKNG-ISAGAYHAGLSNEERERVQQAFLND-----------------------EIK 282 (590)
T ss_pred cccCCCeEEEEeeHHhHHHHHHHHHHCC-CceEEecCCCCHHHHHHHHHHHhcC-----------------------CCc
Confidence 4445778999999999999999999997 7999999999999999999999998 899
Q ss_pred EEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCCCCeEEEEEEe
Q 031433 102 MIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAGTSFSDIILL 157 (159)
Q Consensus 102 vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~~g~~i~~v~~ 157 (159)
|+|||.+ +++|||-|+|++|||||+|.++++|.|-+||+||.+..+..++.+
T Consensus 283 iiVAT~A----FGMGIdKpdVRfViH~~lP~s~EsYyQE~GRAGRDG~~a~aill~ 334 (590)
T COG0514 283 VMVATNA----FGMGIDKPDVRFVIHYDLPGSIESYYQETGRAGRDGLPAEAILLY 334 (590)
T ss_pred EEEEecc----ccCccCCCCceEEEEecCCCCHHHHHHHHhhccCCCCcceEEEee
Confidence 9999999 999999999999999999999999999999999998777766543
|
|
| >KOG4284 consensus DEAD box protein [Transcription] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.5e-21 Score=169.60 Aligned_cols=119 Identities=16% Similarity=0.315 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCC
Q 031433 9 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSG 88 (159)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~ 88 (159)
+.+++.|..+++ ..+..++||||+....|+-++.+|...| +.+.++.|.|++.+|..+++++++-
T Consensus 257 rlklq~L~~vf~-~ipy~QAlVF~~~~sra~~~a~~L~ssG-~d~~~ISgaM~Q~~Rl~a~~~lr~f------------- 321 (980)
T KOG4284|consen 257 RLKLQKLTHVFK-SIPYVQALVFCDQISRAEPIATHLKSSG-LDVTFISGAMSQKDRLLAVDQLRAF------------- 321 (980)
T ss_pred HHHHHHHHHHHh-hCchHHHHhhhhhhhhhhHHHHHhhccC-CCeEEeccccchhHHHHHHHHhhhc-------------
Confidence 345566666776 7778999999999999999999999998 7999999999999999999999997
Q ss_pred CCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCC--CCeEEEEEE
Q 031433 89 DESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAA--GTSFSDIIL 156 (159)
Q Consensus 89 ~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~--~g~~i~~v~ 156 (159)
.++|||+||+ .+||||-+.|++|||.|.|.+-++|+|||||+||- .|.++.|+.
T Consensus 322 ----------~~rILVsTDL----taRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~ 377 (980)
T KOG4284|consen 322 ----------RVRILVSTDL----TARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLE 377 (980)
T ss_pred ----------eEEEEEecch----hhccCCccccceEEecCCCcchHHHHHHhhhcccccccceeEEEec
Confidence 8999999999 99999999999999999999999999999999654 577777653
|
|
| >PRK09200 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.86 E-value=5e-21 Score=171.98 Aligned_cols=124 Identities=17% Similarity=0.182 Sum_probs=103.6
Q ss_pred ecCcHHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccc
Q 031433 4 SFTFQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKV 83 (159)
Q Consensus 4 ~~~~~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~ 83 (159)
+.+..++...+++.+......+.++||||+|++.++.+++.|.+.| +.+..+||++.++++..+.++++.|
T Consensus 407 ~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~g-i~~~~L~~~~~~~e~~~i~~ag~~g-------- 477 (790)
T PRK09200 407 FVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAG-IPHNLLNAKNAAKEAQIIAEAGQKG-------- 477 (790)
T ss_pred EcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCC-CCEEEecCCccHHHHHHHHHcCCCC--------
Confidence 3445555555666554423568999999999999999999999998 7999999999998888777776553
Q ss_pred cccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCC---CCCC-----eEEEccCCCChhHHHhhhhcccCCC--CeEEE
Q 031433 84 TEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESA---ISAR-----VLINYELPTKKETYIRRMTTCLAAG--TSFSD 153 (159)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~---~~v~-----~VI~~d~P~~~~~yi~R~GR~~~~~--g~~i~ 153 (159)
.|+||||+ ++||+|+ ++|. +|||||+|.+...|+||+||+||.+ |.++.
T Consensus 478 -----------------~VlIATdm----AgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~ 536 (790)
T PRK09200 478 -----------------AVTVATNM----AGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQF 536 (790)
T ss_pred -----------------eEEEEccc----hhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEEE
Confidence 69999999 9999999 6999 9999999999999999999997765 77787
Q ss_pred EEEe
Q 031433 154 IILL 157 (159)
Q Consensus 154 ~v~~ 157 (159)
|+++
T Consensus 537 ~is~ 540 (790)
T PRK09200 537 FISL 540 (790)
T ss_pred EEcc
Confidence 7763
|
|
| >KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.7e-21 Score=163.51 Aligned_cols=126 Identities=19% Similarity=0.282 Sum_probs=114.2
Q ss_pred ceecCcHHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccc
Q 031433 2 SVSFTFQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQ 81 (159)
Q Consensus 2 ~v~~~~~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~ 81 (159)
+|......++..|++.|.+ .....++|||+-.+..++.++..|.-++ +++..+||+|.+.+|.++|.+|++.
T Consensus 446 ~V~~s~~~Kl~wl~~~L~~-f~S~gkvlifVTKk~~~e~i~a~Lklk~-~~v~llhgdkdqa~rn~~ls~fKkk------ 517 (731)
T KOG0339|consen 446 SVCPSEEKKLNWLLRHLVE-FSSEGKVLIFVTKKADAEEIAANLKLKG-FNVSLLHGDKDQAERNEVLSKFKKK------ 517 (731)
T ss_pred eeccCcHHHHHHHHHHhhh-hccCCcEEEEEeccCCHHHHHHHhcccc-ceeeeecCchhhHHHHHHHHHHhhc------
Confidence 4555667788888887776 5556899999999999999999999998 6999999999999999999999998
Q ss_pred cccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCC--CCeEEEEEE
Q 031433 82 KVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAA--GTSFSDIIL 156 (159)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~--~g~~i~~v~ 156 (159)
...|||+||+ ++||+|++++..|||||+-.+++.|.||+||++|. .|.+.++|+
T Consensus 518 -----------------~~~VlvatDv----aargldI~~ikTVvnyD~ardIdththrigrtgRag~kGvayTlvT 573 (731)
T KOG0339|consen 518 -----------------RKPVLVATDV----AARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEKGVAYTLVT 573 (731)
T ss_pred -----------------CCceEEEeeH----hhcCCCccccceeecccccchhHHHHHHhhhcccccccceeeEEec
Confidence 8999999999 99999999999999999999999999999999665 488888876
|
|
| >KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.1e-21 Score=163.45 Aligned_cols=108 Identities=17% Similarity=0.279 Sum_probs=97.1
Q ss_pred CCCCCcEEEEeCchHHHHHHHHHHh-cC--CCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCC
Q 031433 22 RRPGLPMIVCCSSRDELDAVCSAVS-NL--ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEH 98 (159)
Q Consensus 22 ~~~~~k~iIF~ns~~~~~~l~~~L~-~~--~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (159)
.....++|+|+|+.+.+..+++.|+ .. ...++..++|.++...|.+.+++|..|
T Consensus 426 ~~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g----------------------- 482 (620)
T KOG0350|consen 426 SNKLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKG----------------------- 482 (620)
T ss_pred HhhcceEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcC-----------------------
Confidence 5567999999999999999999998 22 225788899999999999999999999
Q ss_pred ceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhccc--CCCCeEEEEEE
Q 031433 99 KSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCL--AAGTSFSDIIL 156 (159)
Q Consensus 99 ~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~--~~~g~~i~~v~ 156 (159)
.+++|||||+ ++||||+.+|+.|||||+|.+...|+||+||++ ++.|.++++++
T Consensus 483 ~i~vLIcSD~----laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G~a~tll~ 538 (620)
T KOG0350|consen 483 DINVLICSDA----LARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDGYAITLLD 538 (620)
T ss_pred CceEEEehhh----hhcCCcccccceEeecCCCchhhHHHHhhcccccccCCceEEEeec
Confidence 8999999999 999999999999999999999999999999994 45588888653
|
|
| >TIGR00631 uvrb excinuclease ABC, B subunit | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.1e-20 Score=166.17 Aligned_cols=118 Identities=14% Similarity=0.172 Sum_probs=104.5
Q ss_pred HHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCC
Q 031433 11 LVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDE 90 (159)
Q Consensus 11 l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~ 90 (159)
+..+++.+......+.++||||+|++.++.|++.|.+.| +.+..+||++++.+|.+++++|+.|
T Consensus 428 i~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~g-i~~~~lh~~~~~~eR~~~l~~fr~G--------------- 491 (655)
T TIGR00631 428 VDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELG-IKVRYLHSEIDTLERVEIIRDLRLG--------------- 491 (655)
T ss_pred HHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhc-cceeeeeCCCCHHHHHHHHHHHhcC---------------
Confidence 344555444434567899999999999999999999998 7999999999999999999999998
Q ss_pred CCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEcc-----CCCChhHHHhhhhcccCC-CCeEEEEEE
Q 031433 91 SETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYE-----LPTKKETYIRRMTTCLAA-GTSFSDIIL 156 (159)
Q Consensus 91 ~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d-----~P~~~~~yi~R~GR~~~~-~g~~i~~v~ 156 (159)
++.|||||++ ++||+|+|++++||++| .|.+..+|+||+||++|. .|.++.|+.
T Consensus 492 --------~i~VLV~t~~----L~rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~~~G~vi~~~~ 551 (655)
T TIGR00631 492 --------EFDVLVGINL----LREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKVIMYAD 551 (655)
T ss_pred --------CceEEEEcCh----hcCCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCCCCCEEEEEEc
Confidence 8999999999 99999999999999999 899999999999999775 577777754
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) |
| >PRK13766 Hef nuclease; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.8e-20 Score=167.06 Aligned_cols=121 Identities=20% Similarity=0.248 Sum_probs=105.7
Q ss_pred CcHHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecC--------CCHHHHHHHHHHHhcccc
Q 031433 6 TFQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSD--------LAETERTLILEEFRHTAM 77 (159)
Q Consensus 6 ~~~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~--------~~~~~R~~~l~~F~~~~~ 77 (159)
++.+.|.++|+.+.. ...+.++||||+++++++.|++.|...+ +.+..+||. |++.+|.+++++|+.+
T Consensus 347 pK~~~L~~il~~~~~-~~~~~kvlIF~~~~~t~~~L~~~L~~~~-~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g-- 422 (773)
T PRK13766 347 PKLEKLREIVKEQLG-KNPDSRIIVFTQYRDTAEKIVDLLEKEG-IKAVRFVGQASKDGDKGMSQKEQIEILDKFRAG-- 422 (773)
T ss_pred hHHHHHHHHHHHHHh-cCCCCeEEEEeCcHHHHHHHHHHHHhCC-CceEEEEccccccccCCCCHHHHHHHHHHHHcC--
Confidence 345666777776654 4577999999999999999999998887 688999886 9999999999999998
Q ss_pred cccccccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCCC-CeEEEEE
Q 031433 78 KWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAG-TSFSDII 155 (159)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~~-g~~i~~v 155 (159)
+.++||+|++ +++|+|+|++++||+||+|+++..|+||+||++|.+ |.++.++
T Consensus 423 ---------------------~~~vLvaT~~----~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~~~~v~~l~ 476 (773)
T PRK13766 423 ---------------------EFNVLVSTSV----AEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQEEGRVVVLI 476 (773)
T ss_pred ---------------------CCCEEEECCh----hhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCCCCEEEEEE
Confidence 8999999999 999999999999999999999999999999997753 5655554
|
|
| >PRK09751 putative ATP-dependent helicase Lhr; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.3e-20 Score=175.95 Aligned_cols=104 Identities=14% Similarity=0.180 Sum_probs=91.9
Q ss_pred CCcEEEEeCchHHHHHHHHHHhcCCC--------------------------------ccEEEeecCCCHHHHHHHHHHH
Q 031433 25 GLPMIVCCSSRDELDAVCSAVSNLAD--------------------------------ISFSSLHSDLAETERTLILEEF 72 (159)
Q Consensus 25 ~~k~iIF~ns~~~~~~l~~~L~~~~~--------------------------------i~~~~l~~~~~~~~R~~~l~~F 72 (159)
.+++||||||++.++.++..|++... ..+..+||+|++++|..+.+.|
T Consensus 244 ~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~f 323 (1490)
T PRK09751 244 HRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQAL 323 (1490)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHHHH
Confidence 58999999999999999999986410 1256889999999999999999
Q ss_pred hcccccccccccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCCC-CeE
Q 031433 73 RHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAG-TSF 151 (159)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~~-g~~ 151 (159)
++| ++++||||+. +++|||++++++||||+.|.++.+|+||+||+|+.. +.+
T Consensus 324 K~G-----------------------~LrvLVATss----LELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s 376 (1490)
T PRK09751 324 KSG-----------------------ELRCVVATSS----LELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVS 376 (1490)
T ss_pred HhC-----------------------CceEEEeCcH----HHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCcc
Confidence 999 8999999999 999999999999999999999999999999998864 444
Q ss_pred EEEE
Q 031433 152 SDII 155 (159)
Q Consensus 152 i~~v 155 (159)
..++
T Consensus 377 ~gli 380 (1490)
T PRK09751 377 KGLF 380 (1490)
T ss_pred EEEE
Confidence 4443
|
|
| >PRK05298 excinuclease ABC subunit B; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.4e-20 Score=163.70 Aligned_cols=117 Identities=15% Similarity=0.179 Sum_probs=103.3
Q ss_pred HHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCC
Q 031433 12 VELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDES 91 (159)
Q Consensus 12 ~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~ 91 (159)
..++..+......+.++||||+|++.++.|++.|.+.| +.+..+||++++.+|..++++|+.|
T Consensus 433 ~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~g-i~~~~~h~~~~~~~R~~~l~~f~~g---------------- 495 (652)
T PRK05298 433 DDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELG-IKVRYLHSDIDTLERVEIIRDLRLG---------------- 495 (652)
T ss_pred HHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcc-eeEEEEECCCCHHHHHHHHHHHHcC----------------
Confidence 34444443323457899999999999999999999998 7999999999999999999999998
Q ss_pred CCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccC-----CCChhHHHhhhhcccCC-CCeEEEEEE
Q 031433 92 ETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYEL-----PTKKETYIRRMTTCLAA-GTSFSDIIL 156 (159)
Q Consensus 92 ~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~-----P~~~~~yi~R~GR~~~~-~g~~i~~v~ 156 (159)
++.|+|||+. +++|+|+|++++||++|. |.+...|+||+||+||. .|.+++|++
T Consensus 496 -------~i~vlV~t~~----L~rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~~~G~~i~~~~ 555 (652)
T PRK05298 496 -------EFDVLVGINL----LREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKVILYAD 555 (652)
T ss_pred -------CceEEEEeCH----HhCCccccCCcEEEEeCCcccccCCCHHHHHHHhccccCCCCCEEEEEec
Confidence 8999999999 999999999999999985 88999999999999665 588888875
|
|
| >cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.4e-19 Score=127.01 Aligned_cols=98 Identities=29% Similarity=0.524 Sum_probs=92.5
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEE
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMI 103 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL 103 (159)
.+.++||||++.+.++.+.+.|.+.+ ..+..+||+++.++|..+++.|.++ ...+|
T Consensus 27 ~~~~~lvf~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~f~~~-----------------------~~~il 82 (131)
T cd00079 27 KGGKVLIFCPSKKMLDELAELLRKPG-IKVAALHGDGSQEEREEVLKDFREG-----------------------EIVVL 82 (131)
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhcC-CcEEEEECCCCHHHHHHHHHHHHcC-----------------------CCcEE
Confidence 57899999999999999999999876 6999999999999999999999998 79999
Q ss_pred EEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCCCC
Q 031433 104 VVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAGT 149 (159)
Q Consensus 104 V~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~~g 149 (159)
++|.. +++|+|++.+++||.++.|++...|+|++||++|.+.
T Consensus 83 i~t~~----~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~ 124 (131)
T cd00079 83 VATDV----IARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQ 124 (131)
T ss_pred EEcCh----hhcCcChhhCCEEEEeCCCCCHHHheecccccccCCC
Confidence 99999 9999999999999999999999999999999977653
|
|
| >PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.8e-20 Score=121.84 Aligned_cols=78 Identities=27% Similarity=0.439 Sum_probs=73.5
Q ss_pred HHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCC
Q 031433 43 SAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISA 122 (159)
Q Consensus 43 ~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v 122 (159)
+.|+..+ +.+..+||++++++|..++++|+.+ ...+||||++ +++|+|+|++
T Consensus 1 ~~L~~~~-~~~~~i~~~~~~~~r~~~~~~f~~~-----------------------~~~vli~t~~----~~~Gid~~~~ 52 (78)
T PF00271_consen 1 KFLEKKG-IKVAIIHGDMSQKERQEILKKFNSG-----------------------EIRVLIATDI----LGEGIDLPDA 52 (78)
T ss_dssp HHHHHTT-SSEEEESTTSHHHHHHHHHHHHHTT-----------------------SSSEEEESCG----GTTSSTSTTE
T ss_pred CChHHCC-CcEEEEECCCCHHHHHHHHHHhhcc-----------------------CceEEEeecc----cccccccccc
Confidence 3577777 7999999999999999999999998 7899999999 9999999999
Q ss_pred CeEEEccCCCChhHHHhhhhcccCCC
Q 031433 123 RVLINYELPTKKETYIRRMTTCLAAG 148 (159)
Q Consensus 123 ~~VI~~d~P~~~~~yi~R~GR~~~~~ 148 (159)
++||+|++|+++..|.|++||++|.+
T Consensus 53 ~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 53 SHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp SEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred ccccccccCCCHHHHHHHhhcCCCCC
Confidence 99999999999999999999998864
|
It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B .... |
| >TIGR03714 secA2 accessory Sec system translocase SecA2 | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.5e-19 Score=161.63 Aligned_cols=124 Identities=17% Similarity=0.151 Sum_probs=103.2
Q ss_pred eecCcHHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhccccccccc
Q 031433 3 VSFTFQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQK 82 (159)
Q Consensus 3 v~~~~~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~ 82 (159)
++.+..++...+++.+......+.++||||+|++.++.+++.|.+.| +.+..+||++.+++|..+.++|+.
T Consensus 402 i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~g-i~~~~L~a~~~~~E~~ii~~ag~~-------- 472 (762)
T TIGR03714 402 IYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREG-IPHNLLNAQNAAKEAQIIAEAGQK-------- 472 (762)
T ss_pred EEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCC-CCEEEecCCChHHHHHHHHHcCCC--------
Confidence 45555666666666554434567999999999999999999999998 799999999999888777665555
Q ss_pred ccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCC---------CCCeEEEccCCCChhHHHhhhhcccCCC--CeE
Q 031433 83 VTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAI---------SARVLINYELPTKKETYIRRMTTCLAAG--TSF 151 (159)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~---------~v~~VI~~d~P~~~~~yi~R~GR~~~~~--g~~ 151 (159)
..|+||||+ ++||+|++ ++++|++|++|....+ .||+||+||.+ |.+
T Consensus 473 -----------------g~VlIATdm----AgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G~s 530 (762)
T TIGR03714 473 -----------------GAVTVATSM----AGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDPGSS 530 (762)
T ss_pred -----------------CeEEEEccc----cccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCceeE
Confidence 369999999 99999999 9999999999998877 99999997765 777
Q ss_pred EEEEEe
Q 031433 152 SDIILL 157 (159)
Q Consensus 152 i~~v~~ 157 (159)
+.|+++
T Consensus 531 ~~~is~ 536 (762)
T TIGR03714 531 QFFVSL 536 (762)
T ss_pred EEEEcc
Confidence 777753
|
Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii. |
| >KOG0334 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.2e-20 Score=165.08 Aligned_cols=121 Identities=20% Similarity=0.369 Sum_probs=107.4
Q ss_pred cHHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhccccccccccccc
Q 031433 7 FQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQ 86 (159)
Q Consensus 7 ~~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~ 86 (159)
+.+++.+|+..|-. .....++||||.+...|+.+.+.|.+.| +.+..|||+.++.+|..+++.|+++
T Consensus 596 e~eKf~kL~eLl~e-~~e~~~tiiFv~~qe~~d~l~~~L~~ag-~~~~slHGgv~q~dR~sti~dfK~~----------- 662 (997)
T KOG0334|consen 596 ENEKFLKLLELLGE-RYEDGKTIIFVDKQEKADALLRDLQKAG-YNCDSLHGGVDQHDRSSTIEDFKNG----------- 662 (997)
T ss_pred chHHHHHHHHHHHH-HhhcCCEEEEEcCchHHHHHHHHHHhcC-cchhhhcCCCchHHHHhHHHHHhcc-----------
Confidence 45666666663333 3347899999999999999999999888 6888899999999999999999999
Q ss_pred CCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcc--cCCCCeEEEEEE
Q 031433 87 SGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LAAGTSFSDIIL 156 (159)
Q Consensus 87 ~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~--~~~~g~~i~~v~ 156 (159)
.+.+||+|++ ++||+|+++..+|||||+|...++|+||+||+ .++.|.|++|++
T Consensus 663 ------------~~~LLvaTsv----varGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~AvtFi~ 718 (997)
T KOG0334|consen 663 ------------VVNLLVATSV----VARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTFIT 718 (997)
T ss_pred ------------CceEEEehhh----hhcccccccceEEEEcccchhHHHHHHHhcccccCCccceeEEEeC
Confidence 8999999999 99999999999999999999999999999999 556689999875
|
|
| >TIGR01587 cas3_core CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.3e-19 Score=148.43 Aligned_cols=96 Identities=22% Similarity=0.309 Sum_probs=85.0
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhcCCC-ccEEEeecCCCHHHHHHH----HHHHhcccccccccccccCCCCCCCCCCC
Q 031433 23 RPGLPMIVCCSSRDELDAVCSAVSNLAD-ISFSSLHSDLAETERTLI----LEEFRHTAMKWNQKVTEQSGDESETGKDE 97 (159)
Q Consensus 23 ~~~~k~iIF~ns~~~~~~l~~~L~~~~~-i~~~~l~~~~~~~~R~~~----l~~F~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (159)
..++++||||||++.++.+++.|++.+. ..+..+||++++.+|.+. ++.|+++
T Consensus 220 ~~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~---------------------- 277 (358)
T TIGR01587 220 KKGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKN---------------------- 277 (358)
T ss_pred hCCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCC----------------------
Confidence 3468999999999999999999988752 259999999999999764 8899998
Q ss_pred CceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCCC
Q 031433 98 HKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAG 148 (159)
Q Consensus 98 ~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~~ 148 (159)
+.++|||||+ +++|+|++ +++||+++.| +++|+||+||++|.+
T Consensus 278 -~~~ilvaT~~----~~~GiDi~-~~~vi~~~~~--~~~~iqr~GR~gR~g 320 (358)
T TIGR01587 278 -EKFVIVATQV----IEASLDIS-ADVMITELAP--IDSLIQRLGRLHRYG 320 (358)
T ss_pred -CCeEEEECcc----hhceeccC-CCEEEEcCCC--HHHHHHHhccccCCC
Confidence 8999999999 99999995 8999999887 789999999997753
|
This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model. |
| >KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.81 E-value=6e-20 Score=154.15 Aligned_cols=110 Identities=23% Similarity=0.340 Sum_probs=101.3
Q ss_pred CCCCCcEEEEeCchHHHHHHHHHHhcCCC--ccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCc
Q 031433 22 RRPGLPMIVCCSSRDELDAVCSAVSNLAD--ISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHK 99 (159)
Q Consensus 22 ~~~~~k~iIF~ns~~~~~~l~~~L~~~~~--i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (159)
+..-.|+||||.|+..|+.|.++++.+|+ ..++.+||+..+++|++.++.|+++ .
T Consensus 502 ~h~mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~-----------------------d 558 (725)
T KOG0349|consen 502 RHAMDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKF-----------------------D 558 (725)
T ss_pred hhccCceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhc-----------------------C
Confidence 34458999999999999999999998853 5899999999999999999999998 8
Q ss_pred eeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCCC--CeEEEEEEee
Q 031433 100 SHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAG--TSFSDIILLV 158 (159)
Q Consensus 100 ~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~~--g~~i~~v~~~ 158 (159)
.+.|||||+ ++||+|+..+.++||.-+|.+...|+|||||+||.. |.+||+|..|
T Consensus 559 vkflictdv----aargldi~g~p~~invtlpd~k~nyvhrigrvgraermglaislvat~ 615 (725)
T KOG0349|consen 559 VKFLICTDV----AARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRAERMGLAISLVATV 615 (725)
T ss_pred eEEEEEehh----hhccccccCCceEEEEecCcccchhhhhhhccchhhhcceeEEEeecc
Confidence 999999999 999999999999999999999999999999997754 9999988654
|
|
| >TIGR00963 secA preprotein translocase, SecA subunit | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.2e-19 Score=158.89 Aligned_cols=125 Identities=15% Similarity=0.123 Sum_probs=108.8
Q ss_pred eecCcHHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhccccccccc
Q 031433 3 VSFTFQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQK 82 (159)
Q Consensus 3 v~~~~~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~ 82 (159)
++.+..++...+.+.+......+.++||||+|++.++.+++.|.+.| +.+..+|++ +.+|...+..|+.+
T Consensus 383 i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~g-i~~~~Lna~--q~~rEa~ii~~ag~------- 452 (745)
T TIGR00963 383 VYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERG-IPHNVLNAK--NHEREAEIIAQAGR------- 452 (745)
T ss_pred EEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcC-CCeEEeeCC--hHHHHHHHHHhcCC-------
Confidence 44555666666666665445678999999999999999999999998 799999998 88999999999998
Q ss_pred ccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCC-------CCeEEEccCCCChhHHHhhhhcccCCC--CeEEE
Q 031433 83 VTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAIS-------ARVLINYELPTKKETYIRRMTTCLAAG--TSFSD 153 (159)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~-------v~~VI~~d~P~~~~~yi~R~GR~~~~~--g~~i~ 153 (159)
+..|+||||+ ++||+|++. .-+||+++.|.+...|.||+||+||.+ |.+..
T Consensus 453 ----------------~g~VtIATnm----AgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~ 512 (745)
T TIGR00963 453 ----------------KGAVTIATNM----AGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRF 512 (745)
T ss_pred ----------------CceEEEEecc----ccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEE
Confidence 8999999999 999999998 559999999999999999999997765 88777
Q ss_pred EEEe
Q 031433 154 IILL 157 (159)
Q Consensus 154 ~v~~ 157 (159)
|+++
T Consensus 513 ~ls~ 516 (745)
T TIGR00963 513 FLSL 516 (745)
T ss_pred EEec
Confidence 7764
|
The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus. |
| >PHA02653 RNA helicase NPH-II; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.1e-19 Score=157.49 Aligned_cols=104 Identities=16% Similarity=0.148 Sum_probs=90.7
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcCC-CccEEEeecCCCHHHHHHHHHHH-hcccccccccccccCCCCCCCCCCCCcee
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSNLA-DISFSSLHSDLAETERTLILEEF-RHTAMKWNQKVTEQSGDESETGKDEHKSH 101 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~~~-~i~~~~l~~~~~~~~R~~~l~~F-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (159)
.+.++||||+++++++.+++.|++.. ++.+..|||+|+++ .+.+++| ++| +.+
T Consensus 394 ~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~g-----------------------k~k 448 (675)
T PHA02653 394 KGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSK-----------------------NPS 448 (675)
T ss_pred cCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccC-----------------------cee
Confidence 35789999999999999999999872 37999999999975 5677887 566 899
Q ss_pred EEEEecCCCCCCcCCCCCCCCCeEEEcc---CCC---------ChhHHHhhhhcccCC-CCeEEEEEE
Q 031433 102 MIVVTDACLPLLSSGESAISARVLINYE---LPT---------KKETYIRRMTTCLAA-GTSFSDIIL 156 (159)
Q Consensus 102 vLV~Td~~~~~~~rGid~~~v~~VI~~d---~P~---------~~~~yi~R~GR~~~~-~g~~i~~v~ 156 (159)
||||||+ ++||||+++|++||++| .|. +.++|+||+||+||. .|.++.|.+
T Consensus 449 ILVATdI----AERGIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~~~G~c~rLyt 512 (675)
T PHA02653 449 IIISTPY----LESSVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRVSPGTYVYFYD 512 (675)
T ss_pred EEeccCh----hhccccccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCCCCCeEEEEEC
Confidence 9999999 99999999999999999 676 788999999999775 588887764
|
|
| >TIGR00580 mfd transcription-repair coupling factor (mfd) | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.5e-19 Score=160.89 Aligned_cols=104 Identities=12% Similarity=0.138 Sum_probs=93.4
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcC-CCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeE
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSNL-ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHM 102 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~~-~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 102 (159)
.+.+++||||++++++.+++.|++. +.+.+..+||+|++++|.+++++|++| +.+|
T Consensus 659 ~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~G-----------------------k~~I 715 (926)
T TIGR00580 659 RGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKG-----------------------EFQV 715 (926)
T ss_pred cCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcC-----------------------CCCE
Confidence 3689999999999999999999985 336999999999999999999999999 8999
Q ss_pred EEEecCCCCCCcCCCCCCCCCeEEEccCCC-ChhHHHhhhhcccCCC--CeEEEE
Q 031433 103 IVVTDACLPLLSSGESAISARVLINYELPT-KKETYIRRMTTCLAAG--TSFSDI 154 (159)
Q Consensus 103 LV~Td~~~~~~~rGid~~~v~~VI~~d~P~-~~~~yi~R~GR~~~~~--g~~i~~ 154 (159)
||||++ +++|+|+|++++||+++.|. ....|.||+||+||.+ |.|+.+
T Consensus 716 LVaT~i----ie~GIDIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~g~aill 766 (926)
T TIGR00580 716 LVCTTI----IETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSKKKAYAYLL 766 (926)
T ss_pred EEECCh----hhcccccccCCEEEEecCCCCCHHHHHHHhcCCCCCCCCeEEEEE
Confidence 999999 99999999999999999975 6789999999997766 445444
|
All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families. |
| >PRK10689 transcription-repair coupling factor; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.4e-19 Score=164.21 Aligned_cols=105 Identities=12% Similarity=0.164 Sum_probs=90.4
Q ss_pred CCcEEEEeCchHHHHHHHHHHhcC-CCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEE
Q 031433 25 GLPMIVCCSSRDELDAVCSAVSNL-ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMI 103 (159)
Q Consensus 25 ~~k~iIF~ns~~~~~~l~~~L~~~-~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL 103 (159)
+.+++||||+++.++.+++.|++. +...+..+||+|++++|.+++++|++| +.+||
T Consensus 809 ~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~G-----------------------k~~VL 865 (1147)
T PRK10689 809 GGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQ-----------------------RFNVL 865 (1147)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhc-----------------------CCCEE
Confidence 578999999999999999999987 236899999999999999999999999 89999
Q ss_pred EEecCCCCCCcCCCCCCCCCeEEEccCC-CChhHHHhhhhcccCCCCeEEEEEE
Q 031433 104 VVTDACLPLLSSGESAISARVLINYELP-TKKETYIRRMTTCLAAGTSFSDIIL 156 (159)
Q Consensus 104 V~Td~~~~~~~rGid~~~v~~VI~~d~P-~~~~~yi~R~GR~~~~~g~~i~~v~ 156 (159)
|||++ ++||+|+|++++||..+.. .+...|+||+||+||.+..+..++.
T Consensus 866 VaTdI----ierGIDIP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g~a~ll 915 (1147)
T PRK10689 866 VCTTI----IETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLL 915 (1147)
T ss_pred EECch----hhcccccccCCEEEEecCCCCCHHHHHHHhhccCCCCCceEEEEE
Confidence 99999 9999999999999943322 2345699999999888766665543
|
|
| >TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.2e-18 Score=158.01 Aligned_cols=105 Identities=11% Similarity=0.128 Sum_probs=94.1
Q ss_pred CCcEEEEeCchHHHHHHHHHHhcC--CCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeE
Q 031433 25 GLPMIVCCSSRDELDAVCSAVSNL--ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHM 102 (159)
Q Consensus 25 ~~k~iIF~ns~~~~~~l~~~L~~~--~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 102 (159)
..++||||+++++++.+++.|++. ..+.+..+||+|++++|.++++.|++| +.+|
T Consensus 209 ~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G-----------------------~rkV 265 (819)
T TIGR01970 209 TGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQG-----------------------RRKV 265 (819)
T ss_pred CCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccC-----------------------CeEE
Confidence 478999999999999999999873 237999999999999999999999998 8999
Q ss_pred EEEecCCCCCCcCCCCCCCCCeEEEccCCCCh------------------hHHHhhhhcccC-CCCeEEEEEE
Q 031433 103 IVVTDACLPLLSSGESAISARVLINYELPTKK------------------ETYIRRMTTCLA-AGTSFSDIIL 156 (159)
Q Consensus 103 LV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~------------------~~yi~R~GR~~~-~~g~~i~~v~ 156 (159)
+||||+ +++|||+++|++|||+++|..+ .+|.||+||+|| ..|.|+.+.+
T Consensus 266 lVATnI----AErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~~~G~cyrL~t 334 (819)
T TIGR01970 266 VLATNI----AETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRLEPGVCYRLWS 334 (819)
T ss_pred EEecch----HhhcccccCceEEEEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCCCCCEEEEeCC
Confidence 999999 9999999999999999998632 358999999988 5689888764
|
This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. |
| >PRK12906 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.6e-18 Score=155.48 Aligned_cols=125 Identities=12% Similarity=0.140 Sum_probs=106.1
Q ss_pred eecCcHHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhccccccccc
Q 031433 3 VSFTFQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQK 82 (159)
Q Consensus 3 v~~~~~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~ 82 (159)
++.+..++...+.+.+......+.++||||+|+..++.+++.|.+.+ +.+..||+++.++++..+.++++.|
T Consensus 418 i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~g-i~~~~Lna~~~~~Ea~ii~~ag~~g------- 489 (796)
T PRK12906 418 LYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAG-IPHAVLNAKNHAKEAEIIMNAGQRG------- 489 (796)
T ss_pred EEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHCC-CCeeEecCCcHHHHHHHHHhcCCCc-------
Confidence 34455566666666554435578999999999999999999999998 7999999999988888888877776
Q ss_pred ccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCC---CCC-----eEEEccCCCChhHHHhhhhcccCCC--CeEE
Q 031433 83 VTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAI---SAR-----VLINYELPTKKETYIRRMTTCLAAG--TSFS 152 (159)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~---~v~-----~VI~~d~P~~~~~yi~R~GR~~~~~--g~~i 152 (159)
.|+|||++ ++||+|++ +|. |||+++.|.+...|.||.||+||.| |.++
T Consensus 490 ------------------~VtIATnm----AGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s~ 547 (796)
T PRK12906 490 ------------------AVTIATNM----AGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSSR 547 (796)
T ss_pred ------------------eEEEEecc----ccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCcceE
Confidence 49999999 99999994 899 9999999999999999999997765 7777
Q ss_pred EEEEe
Q 031433 153 DIILL 157 (159)
Q Consensus 153 ~~v~~ 157 (159)
.|+++
T Consensus 548 ~~~sl 552 (796)
T PRK12906 548 FYLSL 552 (796)
T ss_pred EEEec
Confidence 77764
|
|
| >TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.4e-18 Score=155.30 Aligned_cols=111 Identities=18% Similarity=0.239 Sum_probs=87.6
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHH-----HHHHHHhcccccccccccccCCCCCCCCCCCC
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERT-----LILEEFRHTAMKWNQKVTEQSGDESETGKDEH 98 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~-----~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (159)
.+.++||||||++.++.+++.|++.+ + ..+||+|++.+|. +++++|++... .++ ++ ...+
T Consensus 271 ~g~~vLVF~NTv~~Aq~L~~~L~~~g-~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~---------~g~--~~-~~~~ 335 (844)
T TIGR02621 271 SGGAILVFCRTVKHVRKVFAKLPKEK-F--ELLTGTLRGAERDDLVKKEIFNRFLPQML---------SGS--RA-RPQQ 335 (844)
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhcC-C--eEeeCCCCHHHHhhHHHHHHHHHHhcccc---------ccc--cc-cccc
Confidence 46899999999999999999999886 4 8999999999999 88999987200 000 00 0112
Q ss_pred ceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCC---CCeEEEEEE
Q 031433 99 KSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAA---GTSFSDIIL 156 (159)
Q Consensus 99 ~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~---~g~~i~~v~ 156 (159)
...||||||+ ++||+|++. ++||++..| .++|+||+||++|. ++..+.++.
T Consensus 336 g~~ILVATdV----aerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv~ 389 (844)
T TIGR02621 336 GTVYLVCTSA----GEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIAVVH 389 (844)
T ss_pred cceEEeccch----hhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEEEEe
Confidence 3689999999 999999986 899998877 68999999999664 345566654
|
This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs. |
| >PRK10917 ATP-dependent DNA helicase RecG; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.8e-18 Score=153.46 Aligned_cols=105 Identities=11% Similarity=0.183 Sum_probs=89.8
Q ss_pred CCCCcEEEEeCch--------HHHHHHHHHHhcC-CCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCC
Q 031433 23 RPGLPMIVCCSSR--------DELDAVCSAVSNL-ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESET 93 (159)
Q Consensus 23 ~~~~k~iIF~ns~--------~~~~~l~~~L~~~-~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~ 93 (159)
..+.+++|||+.. ..++.+++.|.+. +.+.+..+||+|++++|.+++++|++|
T Consensus 469 ~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g------------------ 530 (681)
T PRK10917 469 AKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAG------------------ 530 (681)
T ss_pred HcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcC------------------
Confidence 3578999999954 4567788888775 226899999999999999999999998
Q ss_pred CCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCC-ChhHHHhhhhcccCCC--CeEEEE
Q 031433 94 GKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPT-KKETYIRRMTTCLAAG--TSFSDI 154 (159)
Q Consensus 94 ~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~-~~~~yi~R~GR~~~~~--g~~i~~ 154 (159)
+.+|||||++ +++|+|+|++++||+|+.|. ....|.||+||+||.+ |.|+.+
T Consensus 531 -----~~~ILVaT~v----ie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill 585 (681)
T PRK10917 531 -----EIDILVATTV----IEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLL 585 (681)
T ss_pred -----CCCEEEECcc----eeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEE
Confidence 8999999999 99999999999999999997 4678888999998866 455444
|
|
| >KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.2e-19 Score=147.62 Aligned_cols=119 Identities=21% Similarity=0.330 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCC
Q 031433 9 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSG 88 (159)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~ 88 (159)
++...||. +......+++.+|||.|+..++++...|+..| +.+..++|.|+++.|...+..|+.+
T Consensus 246 ~K~aaLl~-il~~~~~~~~t~vf~~tk~hve~~~~ll~~~g-~~~s~iysslD~~aRk~~~~~F~~~------------- 310 (529)
T KOG0337|consen 246 EKEAALLS-ILGGRIKDKQTIVFVATKHHVEYVRGLLRDFG-GEGSDIYSSLDQEARKINGRDFRGR------------- 310 (529)
T ss_pred HHHHHHHH-HHhccccccceeEEecccchHHHHHHHHHhcC-CCccccccccChHhhhhccccccCC-------------
Confidence 34344444 44435557899999999999999999999998 6999999999999999999999998
Q ss_pred CCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcc--cCCCCeEEEEEE
Q 031433 89 DESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LAAGTSFSDIIL 156 (159)
Q Consensus 89 ~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~--~~~~g~~i~~v~ 156 (159)
+..+||+||+ ++||+|+|..+.|||||+|.+..-|+||+||+ .++.|.++++|+
T Consensus 311 ----------k~~~lvvTdv----aaRG~diplldnvinyd~p~~~klFvhRVgr~aragrtg~aYs~V~ 366 (529)
T KOG0337|consen 311 ----------KTSILVVTDV----AARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGRTGRAYSLVA 366 (529)
T ss_pred ----------ccceEEEehh----hhccCCCccccccccccCCCCCceEEEEecchhhccccceEEEEEe
Confidence 8999999999 99999999999999999999999999999999 467799999986
|
|
| >PRK11664 ATP-dependent RNA helicase HrpB; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.2e-18 Score=156.35 Aligned_cols=105 Identities=10% Similarity=0.114 Sum_probs=93.6
Q ss_pred CCcEEEEeCchHHHHHHHHHHhcC--CCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeE
Q 031433 25 GLPMIVCCSSRDELDAVCSAVSNL--ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHM 102 (159)
Q Consensus 25 ~~k~iIF~ns~~~~~~l~~~L~~~--~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 102 (159)
..++||||+++++++.+++.|++. ..+.+..+||+|++++|.++++.|++| +.+|
T Consensus 212 ~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G-----------------------~rkV 268 (812)
T PRK11664 212 SGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAG-----------------------RRKV 268 (812)
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCC-----------------------CeEE
Confidence 578999999999999999999872 237899999999999999999999998 8999
Q ss_pred EEEecCCCCCCcCCCCCCCCCeEEEccCCCCh------------------hHHHhhhhcccC-CCCeEEEEEE
Q 031433 103 IVVTDACLPLLSSGESAISARVLINYELPTKK------------------ETYIRRMTTCLA-AGTSFSDIIL 156 (159)
Q Consensus 103 LV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~------------------~~yi~R~GR~~~-~~g~~i~~v~ 156 (159)
+||||+ +++|||+++|++|||+++|... .+|.||+||+|| ..|.|+.+.+
T Consensus 269 lvATnI----AErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~~~G~cyrL~t 337 (812)
T PRK11664 269 VLATNI----AETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRLEPGICLHLYS 337 (812)
T ss_pred EEecch----HHhcccccCceEEEECCCcccccccccCCcceeEEEeechhhhhhhccccCCCCCcEEEEecC
Confidence 999999 9999999999999998887643 579999999977 4688887653
|
|
| >TIGR00643 recG ATP-dependent DNA helicase RecG | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.8e-18 Score=150.77 Aligned_cols=105 Identities=14% Similarity=0.178 Sum_probs=90.1
Q ss_pred CCCCcEEEEeCch--------HHHHHHHHHHhcC-CCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCC
Q 031433 23 RPGLPMIVCCSSR--------DELDAVCSAVSNL-ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESET 93 (159)
Q Consensus 23 ~~~~k~iIF~ns~--------~~~~~l~~~L~~~-~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~ 93 (159)
..+.+++|||+.. ..++.+++.|.+. +.+.+..+||+|++++|.+++++|++|
T Consensus 446 ~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g------------------ 507 (630)
T TIGR00643 446 AKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREG------------------ 507 (630)
T ss_pred HhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcC------------------
Confidence 3568999999875 4567788888764 336899999999999999999999998
Q ss_pred CCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCC-ChhHHHhhhhcccCCC--CeEEEE
Q 031433 94 GKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPT-KKETYIRRMTTCLAAG--TSFSDI 154 (159)
Q Consensus 94 ~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~-~~~~yi~R~GR~~~~~--g~~i~~ 154 (159)
+.+|||||++ +++|+|+|++++||+|+.|. ....|.||+||+||.+ |.|+.+
T Consensus 508 -----~~~ILVaT~v----ie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~ 562 (630)
T TIGR00643 508 -----EVDILVATTV----IEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLV 562 (630)
T ss_pred -----CCCEEEECce----eecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEE
Confidence 8999999999 99999999999999999997 5778888999998765 555543
|
|
| >KOG0354 consensus DEAD-box like helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.1e-17 Score=148.15 Aligned_cols=123 Identities=18% Similarity=0.231 Sum_probs=103.1
Q ss_pred cCcHHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcC--CCccEEEee--------cCCCHHHHHHHHHHHhc
Q 031433 5 FTFQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL--ADISFSSLH--------SDLAETERTLILEEFRH 74 (159)
Q Consensus 5 ~~~~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~--~~i~~~~l~--------~~~~~~~R~~~l~~F~~ 74 (159)
.++.+++.+.+...+. ..+..++||||+++..|++|.++|... .+++...+- .+|++.+.++++++|+.
T Consensus 394 npkle~l~~~l~e~f~-~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~ 472 (746)
T KOG0354|consen 394 NPKLEKLVEILVEQFE-QNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRD 472 (746)
T ss_pred ChhHHHHHHHHHHHhh-cCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhC
Confidence 4567888888887777 888999999999999999999999842 113333333 37999999999999999
Q ss_pred ccccccccccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCCCCeEEEE
Q 031433 75 TAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAGTSFSDI 154 (159)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~~g~~i~~ 154 (159)
| ++++||||++ +++|||+++|++||.||.-.++...+||+||+..++|.++.+
T Consensus 473 G-----------------------~~NvLVATSV----~EEGLDI~ec~lVIcYd~~snpIrmIQrrGRgRa~ns~~vll 525 (746)
T KOG0354|consen 473 G-----------------------EINVLVATSV----AEEGLDIGECNLVICYDYSSNPIRMVQRRGRGRARNSKCVLL 525 (746)
T ss_pred C-----------------------CccEEEEecc----hhccCCcccccEEEEecCCccHHHHHHHhccccccCCeEEEE
Confidence 9 9999999999 999999999999999999999999999999943344655544
Q ss_pred E
Q 031433 155 I 155 (159)
Q Consensus 155 v 155 (159)
.
T Consensus 526 ~ 526 (746)
T KOG0354|consen 526 T 526 (746)
T ss_pred E
Confidence 3
|
|
| >PHA02558 uvsW UvsW helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.8e-17 Score=143.58 Aligned_cols=97 Identities=12% Similarity=0.094 Sum_probs=90.2
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEE
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMI 103 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL 103 (159)
.+.+++|||++.++++.|++.|++.+ .++..+||+|++++|.++++.|+.+ +..+|
T Consensus 343 ~~~~~lV~~~~~~h~~~L~~~L~~~g-~~v~~i~G~~~~~eR~~i~~~~~~~-----------------------~~~vL 398 (501)
T PHA02558 343 KGENTFVMFKYVEHGKPLYEMLKKVY-DKVYYVSGEVDTEDRNEMKKIAEGG-----------------------KGIII 398 (501)
T ss_pred cCCCEEEEEEEHHHHHHHHHHHHHcC-CCEEEEeCCCCHHHHHHHHHHHhCC-----------------------CCeEE
Confidence 45788999999999999999999988 6999999999999999999999988 78899
Q ss_pred EEe-cCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCCC
Q 031433 104 VVT-DACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAG 148 (159)
Q Consensus 104 V~T-d~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~~ 148 (159)
||| ++ +++|+|+|++++||++++|.+...|+||+||++|..
T Consensus 399 vaT~~~----l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~ 440 (501)
T PHA02558 399 VASYGV----FSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKH 440 (501)
T ss_pred EEEcce----eccccccccccEEEEecCCcchhhhhhhhhccccCC
Confidence 998 89 999999999999999999999999999999997653
|
|
| >PRK02362 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1e-17 Score=151.00 Aligned_cols=105 Identities=21% Similarity=0.264 Sum_probs=91.7
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcCCC-----------------------------------ccEEEeecCCCHHHHHHH
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSNLAD-----------------------------------ISFSSLHSDLAETERTLI 68 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~~~~-----------------------------------i~~~~l~~~~~~~~R~~~ 68 (159)
.+.++||||+|++.++.+++.|..... ..+..+|++|++++|..+
T Consensus 242 ~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~v 321 (737)
T PRK02362 242 EGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHRELV 321 (737)
T ss_pred cCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHHHHH
Confidence 468999999999999999888875310 147889999999999999
Q ss_pred HHHHhcccccccccccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEE----cc-----CCCChhHHHh
Q 031433 69 LEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLIN----YE-----LPTKKETYIR 139 (159)
Q Consensus 69 l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~----~d-----~P~~~~~yi~ 139 (159)
++.|++| .++|||||+. +++|+|+|.+++||+ || .|.+..+|.|
T Consensus 322 e~~Fr~G-----------------------~i~VLvaT~t----la~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Q 374 (737)
T PRK02362 322 EDAFRDR-----------------------LIKVISSTPT----LAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQ 374 (737)
T ss_pred HHHHHcC-----------------------CCeEEEechh----hhhhcCCCceEEEEecceeecCCCCceeCCHHHHHH
Confidence 9999999 8999999999 999999999999998 87 6899999999
Q ss_pred hhhcccCCC----CeEEEEE
Q 031433 140 RMTTCLAAG----TSFSDII 155 (159)
Q Consensus 140 R~GR~~~~~----g~~i~~v 155 (159)
|+||+||.+ |.++.+.
T Consensus 375 m~GRAGR~g~d~~G~~ii~~ 394 (737)
T PRK02362 375 MAGRAGRPGLDPYGEAVLLA 394 (737)
T ss_pred HhhcCCCCCCCCCceEEEEe
Confidence 999998854 6666553
|
|
| >PRK12900 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.1e-17 Score=151.73 Aligned_cols=125 Identities=14% Similarity=0.129 Sum_probs=107.1
Q ss_pred eecCcHHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhccccccccc
Q 031433 3 VSFTFQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQK 82 (159)
Q Consensus 3 v~~~~~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~ 82 (159)
||.+..++...+.+.+......+.++||||+|++.++.|++.|...+ +.+.+||+ .+.+|.+.+.+|..+
T Consensus 576 vy~t~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~g-I~h~vLna--kq~~REa~Iia~AG~------- 645 (1025)
T PRK12900 576 VYKTRREKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKR-IAHNVLNA--KQHDREAEIVAEAGQ------- 645 (1025)
T ss_pred EecCHHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcC-CCceeecC--CHHHhHHHHHHhcCC-------
Confidence 45566667667776654434568999999999999999999999998 79999997 688999999999998
Q ss_pred ccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCC---CCC-----eEEEccCCCChhHHHhhhhcccCCC--CeEE
Q 031433 83 VTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAI---SAR-----VLINYELPTKKETYIRRMTTCLAAG--TSFS 152 (159)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~---~v~-----~VI~~d~P~~~~~yi~R~GR~~~~~--g~~i 152 (159)
+..|+||||+ ++||+||+ .|. +||+++.|.+...|.||+||+||.| |.++
T Consensus 646 ----------------~g~VtIATNM----AGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ 705 (1025)
T PRK12900 646 ----------------KGAVTIATNM----AGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESV 705 (1025)
T ss_pred ----------------CCeEEEeccC----cCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceE
Confidence 8999999999 99999999 554 3499999999999999999997665 8888
Q ss_pred EEEEe
Q 031433 153 DIILL 157 (159)
Q Consensus 153 ~~v~~ 157 (159)
.|+++
T Consensus 706 ffvSl 710 (1025)
T PRK12900 706 FYVSL 710 (1025)
T ss_pred EEech
Confidence 87764
|
|
| >TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.5e-17 Score=137.36 Aligned_cols=87 Identities=13% Similarity=0.173 Sum_probs=75.3
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhcCC-CccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCcee
Q 031433 23 RPGLPMIVCCSSRDELDAVCSAVSNLA-DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSH 101 (159)
Q Consensus 23 ~~~~k~iIF~ns~~~~~~l~~~L~~~~-~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (159)
.+++++||||||++.++.+++.|++.+ .+.+..+||.+++++|.+. + +..
T Consensus 270 ~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~------~-----------------------~~~ 320 (357)
T TIGR03158 270 LPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERA------M-----------------------QFD 320 (357)
T ss_pred cCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHh------c-----------------------cCC
Confidence 356899999999999999999999864 2478899999999988643 3 578
Q ss_pred EEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhccc
Q 031433 102 MIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCL 145 (159)
Q Consensus 102 vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~ 145 (159)
+|||||+ ++||+|++.+ +|| ++ |.+.++|+||+||+|
T Consensus 321 iLVaTdv----~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 321 ILLGTST----VDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred EEEEecH----HhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 9999999 9999999987 666 56 999999999999985
|
subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system. |
| >KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.2e-17 Score=150.74 Aligned_cols=116 Identities=27% Similarity=0.374 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCC
Q 031433 9 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSG 88 (159)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~ 88 (159)
+.+..++..+.. ..+....||||.++.+|+.++..|++.+ +.+..+|++|++.+|..+.++|..+
T Consensus 470 ~~~~~~~~~~~~-~~~~~s~IIYC~sr~~ce~vs~~L~~~~-~~a~~YHAGl~~~~R~~Vq~~w~~~------------- 534 (941)
T KOG0351|consen 470 DALLDILEESKL-RHPDQSGIIYCLSRKECEQVSAVLRSLG-KSAAFYHAGLPPKERETVQKAWMSD------------- 534 (941)
T ss_pred cchHHHHHHhhh-cCCCCCeEEEeCCcchHHHHHHHHHHhc-hhhHhhhcCCCHHHHHHHHHHHhcC-------------
Confidence 344445554433 6778999999999999999999999998 7999999999999999999999999
Q ss_pred CCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCCCCeEEE
Q 031433 89 DESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAGTSFSD 153 (159)
Q Consensus 89 ~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~~g~~i~ 153 (159)
+++|++||=+ +++|||.++|+.||||.+|.+.+.|.|-+||+||.+-.+.+
T Consensus 535 ----------~~~VivATVA----FGMGIdK~DVR~ViH~~lPks~E~YYQE~GRAGRDG~~s~C 585 (941)
T KOG0351|consen 535 ----------KIRVIVATVA----FGMGIDKPDVRFVIHYSLPKSFEGYYQEAGRAGRDGLPSSC 585 (941)
T ss_pred ----------CCeEEEEEee----ccCCCCCCceeEEEECCCchhHHHHHHhccccCcCCCccee
Confidence 8999999999 99999999999999999999999999999999888754444
|
|
| >smart00490 HELICc helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.9e-17 Score=106.67 Aligned_cols=81 Identities=31% Similarity=0.500 Sum_probs=75.3
Q ss_pred HHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCC
Q 031433 40 AVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESA 119 (159)
Q Consensus 40 ~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~ 119 (159)
.+++.|+..+ +.+..+||++++++|..+++.|+.+ ...+||+|++ +++|+|+
T Consensus 2 ~l~~~l~~~~-~~~~~~~~~~~~~~r~~~~~~f~~~-----------------------~~~vli~t~~----~~~Gi~~ 53 (82)
T smart00490 2 ELAELLKELG-IKVARLHGGLSQEEREEILEKFNNG-----------------------KIKVLVATDV----AERGLDL 53 (82)
T ss_pred HHHHHHHHCC-CeEEEEECCCCHHHHHHHHHHHHcC-----------------------CCeEEEECCh----hhCCcCh
Confidence 5677888877 6999999999999999999999998 7899999999 9999999
Q ss_pred CCCCeEEEccCCCChhHHHhhhhcccCCC
Q 031433 120 ISARVLINYELPTKKETYIRRMTTCLAAG 148 (159)
Q Consensus 120 ~~v~~VI~~d~P~~~~~yi~R~GR~~~~~ 148 (159)
+++++||.+++|++...|.|++||++|.+
T Consensus 54 ~~~~~vi~~~~~~~~~~~~Q~~gR~~R~g 82 (82)
T smart00490 54 PGVDLVIIYDLPWSPASYIQRIGRAGRAG 82 (82)
T ss_pred hcCCEEEEeCCCCCHHHHHHhhcccccCC
Confidence 99999999999999999999999997753
|
|
| >TIGR00603 rad25 DNA repair helicase rad25 | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.9e-16 Score=141.61 Aligned_cols=93 Identities=20% Similarity=0.216 Sum_probs=83.9
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEE
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMI 103 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL 103 (159)
.+.++||||++.+.++.+++.|. +..+||++++.+|.+++++|+.+ +.+++|
T Consensus 495 ~g~kiLVF~~~~~~l~~~a~~L~------~~~I~G~ts~~ER~~il~~Fr~~----------------------~~i~vL 546 (732)
T TIGR00603 495 RGDKIIVFSDNVFALKEYAIKLG------KPFIYGPTSQQERMQILQNFQHN----------------------PKVNTI 546 (732)
T ss_pred cCCeEEEEeCCHHHHHHHHHHcC------CceEECCCCHHHHHHHHHHHHhC----------------------CCccEE
Confidence 67899999999999999998872 35699999999999999999975 278999
Q ss_pred EEecCCCCCCcCCCCCCCCCeEEEccCC-CChhHHHhhhhcccCCC
Q 031433 104 VVTDACLPLLSSGESAISARVLINYELP-TKKETYIRRMTTCLAAG 148 (159)
Q Consensus 104 V~Td~~~~~~~rGid~~~v~~VI~~d~P-~~~~~yi~R~GR~~~~~ 148 (159)
|+|++ +.+|+|+|++++||+++.| .+...|+||+||++|.+
T Consensus 547 v~SkV----gdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~ 588 (732)
T TIGR00603 547 FLSKV----GDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAK 588 (732)
T ss_pred EEecc----cccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCC
Confidence 99999 9999999999999999998 49999999999996653
|
All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >COG1201 Lhr Lhr-like helicases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=9.9e-17 Score=144.32 Aligned_cols=108 Identities=15% Similarity=0.189 Sum_probs=96.6
Q ss_pred HHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCC
Q 031433 11 LVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDE 90 (159)
Q Consensus 11 l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~ 90 (159)
..+.+..+.+ ..+.+|||+||+.++|.++..|++.+...+...||.++.++|..+-++|++|
T Consensus 242 ~~~~i~~~v~---~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G--------------- 303 (814)
T COG1201 242 LYERIAELVK---KHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEG--------------- 303 (814)
T ss_pred HHHHHHHHHh---hcCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcC---------------
Confidence 4444444544 3468999999999999999999998656899999999999999999999999
Q ss_pred CCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCCC
Q 031433 91 SETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAG 148 (159)
Q Consensus 91 ~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~~ 148 (159)
+++++|||.- ++-|||+.+++.||+|..|.++...+||+||+|.+-
T Consensus 304 --------~lravV~TSS----LELGIDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~ 349 (814)
T COG1201 304 --------ELKAVVATSS----LELGIDIGDIDLVIQLGSPKSVNRFLQRIGRAGHRL 349 (814)
T ss_pred --------CceEEEEccc----hhhccccCCceEEEEeCCcHHHHHHhHhcccccccc
Confidence 8999999999 999999999999999999999999999999995543
|
|
| >PRK00254 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.2e-16 Score=141.98 Aligned_cols=104 Identities=20% Similarity=0.188 Sum_probs=88.1
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcC---------------------------------CCccEEEeecCCCHHHHHHHHH
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSNL---------------------------------ADISFSSLHSDLAETERTLILE 70 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~~---------------------------------~~i~~~~l~~~~~~~~R~~~l~ 70 (159)
.++++||||||++.++.++..|... . ..+..+|++|++++|..+.+
T Consensus 237 ~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~-~gv~~hHagl~~~eR~~ve~ 315 (720)
T PRK00254 237 KGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALR-GGVAFHHAGLGRTERVLIED 315 (720)
T ss_pred hCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHh-hCEEEeCCCCCHHHHHHHHH
Confidence 3689999999999998887766421 1 14889999999999999999
Q ss_pred HHhcccccccccccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEE-------ccCCC-ChhHHHhhhh
Q 031433 71 EFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLIN-------YELPT-KKETYIRRMT 142 (159)
Q Consensus 71 ~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~-------~d~P~-~~~~yi~R~G 142 (159)
.|++| .++|||||+. +++|+|+|.+++||. |+.|. +..+|.||+|
T Consensus 316 ~F~~G-----------------------~i~VLvaT~t----La~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~G 368 (720)
T PRK00254 316 AFREG-----------------------LIKVITATPT----LSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMG 368 (720)
T ss_pred HHHCC-----------------------CCeEEEeCcH----HhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhh
Confidence 99999 8999999999 999999999999994 66665 4679999999
Q ss_pred cccCC----CCeEEEEE
Q 031433 143 TCLAA----GTSFSDII 155 (159)
Q Consensus 143 R~~~~----~g~~i~~v 155 (159)
|+||. .|.++.+.
T Consensus 369 RAGR~~~d~~G~~ii~~ 385 (720)
T PRK00254 369 RAGRPKYDEVGEAIIVA 385 (720)
T ss_pred ccCCCCcCCCceEEEEe
Confidence 99885 37777654
|
|
| >PRK11131 ATP-dependent RNA helicase HrpA; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.8e-16 Score=146.76 Aligned_cols=105 Identities=13% Similarity=0.216 Sum_probs=89.1
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhcCCC--ccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCce
Q 031433 23 RPGLPMIVCCSSRDELDAVCSAVSNLAD--ISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKS 100 (159)
Q Consensus 23 ~~~~k~iIF~ns~~~~~~l~~~L~~~~~--i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (159)
....++||||++.+.++.+++.|++.+. ..+..+||+|++++|.++++. .+ ..
T Consensus 284 ~~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g-----------------------~r 338 (1294)
T PRK11131 284 EGPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HS-----------------------GR 338 (1294)
T ss_pred CCCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cC-----------------------Ce
Confidence 3457899999999999999999998752 347899999999999998875 34 68
Q ss_pred eEEEEecCCCCCCcCCCCCCCCCeEEEcc---------------CCC---ChhHHHhhhhcccCC-CCeEEEEEE
Q 031433 101 HMIVVTDACLPLLSSGESAISARVLINYE---------------LPT---KKETYIRRMTTCLAA-GTSFSDIIL 156 (159)
Q Consensus 101 ~vLV~Td~~~~~~~rGid~~~v~~VI~~d---------------~P~---~~~~yi~R~GR~~~~-~g~~i~~v~ 156 (159)
+|+||||+ +++|||+++|++|||++ +|. |..+|.||+|||||. .|.|+.+.+
T Consensus 339 kIIVATNI----AEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~~~G~c~rLyt 409 (1294)
T PRK11131 339 RIVLATNV----AETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICIRLYS 409 (1294)
T ss_pred eEEEeccH----HhhccccCcceEEEECCCccccccccccCcccCCeeecCHhhHhhhccccCCCCCcEEEEeCC
Confidence 99999999 99999999999999996 453 457899999999775 588887653
|
|
| >PRK09401 reverse gyrase; Reviewed | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.1e-16 Score=145.87 Aligned_cols=86 Identities=15% Similarity=0.134 Sum_probs=79.4
Q ss_pred CcEEEEeCchHH---HHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeE
Q 031433 26 LPMIVCCSSRDE---LDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHM 102 (159)
Q Consensus 26 ~k~iIF~ns~~~---~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 102 (159)
.++||||++++. ++.+++.|+..| +++..+||+| .+.+++|++| +.+|
T Consensus 329 ~~~LIFv~t~~~~~~ae~l~~~L~~~g-i~v~~~hg~l-----~~~l~~F~~G-----------------------~~~V 379 (1176)
T PRK09401 329 DGGLIFVPSDKGKEYAEELAEYLEDLG-INAELAISGF-----ERKFEKFEEG-----------------------EVDV 379 (1176)
T ss_pred CCEEEEEecccChHHHHHHHHHHHHCC-CcEEEEeCcH-----HHHHHHHHCC-----------------------CCCE
Confidence 589999999877 999999999998 7999999999 2346999999 8999
Q ss_pred EEE----ecCCCCCCcCCCCCCC-CCeEEEccCCC------ChhHHHhhhhcc
Q 031433 103 IVV----TDACLPLLSSGESAIS-ARVLINYELPT------KKETYIRRMTTC 144 (159)
Q Consensus 103 LV~----Td~~~~~~~rGid~~~-v~~VI~~d~P~------~~~~yi~R~GR~ 144 (159)
||+ ||+ ++||||+|+ |++|||||+|. ..+.|.||+||+
T Consensus 380 LVatas~tdv----~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~ 428 (1176)
T PRK09401 380 LVGVASYYGV----LVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRL 428 (1176)
T ss_pred EEEecCCCCc----eeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHH
Confidence 999 699 999999999 89999999998 778999999998
|
|
| >PRK01172 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.8e-15 Score=133.95 Aligned_cols=97 Identities=21% Similarity=0.251 Sum_probs=82.6
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcCC----C--------------------ccEEEeecCCCHHHHHHHHHHHhcccccc
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSNLA----D--------------------ISFSSLHSDLAETERTLILEEFRHTAMKW 79 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~~~----~--------------------i~~~~l~~~~~~~~R~~~l~~F~~~~~~~ 79 (159)
.++++||||++++.++.+++.|.+.. . ..+..+||+|++++|..+.+.|++|
T Consensus 235 ~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g---- 310 (674)
T PRK01172 235 DGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNR---- 310 (674)
T ss_pred CCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcC----
Confidence 46899999999999999999887531 0 1367899999999999999999998
Q ss_pred cccccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccC---------CCChhHHHhhhhcccCCC
Q 031433 80 NQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYEL---------PTKKETYIRRMTTCLAAG 148 (159)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~---------P~~~~~yi~R~GR~~~~~ 148 (159)
.++|||||+. +++|+|+|.. .||.+|. |-++.+|.||+||+||.+
T Consensus 311 -------------------~i~VLvaT~~----la~Gvnipa~-~VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g 364 (674)
T PRK01172 311 -------------------YIKVIVATPT----LAAGVNLPAR-LVIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPG 364 (674)
T ss_pred -------------------CCeEEEecch----hhccCCCcce-EEEEcCceEeCCCCceeCCHHHHHHHhhcCCCCC
Confidence 8999999999 9999999985 5555554 457889999999998865
|
|
| >TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.8e-15 Score=141.60 Aligned_cols=115 Identities=8% Similarity=0.132 Sum_probs=92.2
Q ss_pred HHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCC--CccEEEeecCCCHHHHHHHHHHHhcccccccccccccCC
Q 031433 11 LVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLA--DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSG 88 (159)
Q Consensus 11 l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~--~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~ 88 (159)
+.+.+..+.. .....+|||+++++.++.+++.|++.+ .+.+..+||+|++++|.++++ .+.
T Consensus 267 i~~~I~~l~~--~~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~---~~~------------ 329 (1283)
T TIGR01967 267 ILDAVDELFA--EGPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQ---PHS------------ 329 (1283)
T ss_pred HHHHHHHHHh--hCCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhC---CCC------------
Confidence 3344444443 235789999999999999999999763 256899999999999998854 331
Q ss_pred CCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCC------------------ChhHHHhhhhcccCC-CC
Q 031433 89 DESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPT------------------KKETYIRRMTTCLAA-GT 149 (159)
Q Consensus 89 ~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~------------------~~~~yi~R~GR~~~~-~g 149 (159)
..+|+||||+ +++|||+++|++||++++|. |..+|.||+||+||. .|
T Consensus 330 ----------~rkIVLATNI----AEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~~G 395 (1283)
T TIGR01967 330 ----------GRRIVLATNV----AETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVAPG 395 (1283)
T ss_pred ----------CceEEEeccH----HHhccccCCeeEEEeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCCCc
Confidence 4689999999 99999999999999999653 457999999999775 48
Q ss_pred eEEEEEE
Q 031433 150 SFSDIIL 156 (159)
Q Consensus 150 ~~i~~v~ 156 (159)
.|+.+.+
T Consensus 396 ~cyRLyt 402 (1283)
T TIGR01967 396 ICIRLYS 402 (1283)
T ss_pred eEEEecC
Confidence 8877653
|
This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. |
| >PRK09694 helicase Cas3; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1e-14 Score=133.13 Aligned_cols=99 Identities=14% Similarity=0.306 Sum_probs=82.6
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhcCC--CccEEEeecCCCHHHH----HHHHHHH-hcccccccccccccCCCCCCCCC
Q 031433 23 RPGLPMIVCCSSRDELDAVCSAVSNLA--DISFSSLHSDLAETER----TLILEEF-RHTAMKWNQKVTEQSGDESETGK 95 (159)
Q Consensus 23 ~~~~k~iIF~ns~~~~~~l~~~L~~~~--~i~~~~l~~~~~~~~R----~~~l~~F-~~~~~~~~~~~~~~~~~~~~~~~ 95 (159)
..+++++|||||++.++.+++.|++.+ ...+..+||.++..+| .++++.| ++++
T Consensus 558 ~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~------------------- 618 (878)
T PRK09694 558 NAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGK------------------- 618 (878)
T ss_pred hcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCC-------------------
Confidence 357899999999999999999999763 2479999999999999 4577888 4441
Q ss_pred CCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCCC
Q 031433 96 DEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAG 148 (159)
Q Consensus 96 ~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~~ 148 (159)
.+...|||+|++ +++|+|+ +++++|....| .+.|+||+||++|.+
T Consensus 619 -r~~~~ILVaTQV----iE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~ 663 (878)
T PRK09694 619 -RNQGRILVATQV----VEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHH 663 (878)
T ss_pred -cCCCeEEEECcc----hhheeec-CCCeEEECCCC--HHHHHHHHhccCCCC
Confidence 112589999999 9999999 68999999888 789999999996643
|
|
| >KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.2e-15 Score=123.94 Aligned_cols=99 Identities=20% Similarity=0.256 Sum_probs=93.7
Q ss_pred CcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEEEE
Q 031433 26 LPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVV 105 (159)
Q Consensus 26 ~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLV~ 105 (159)
.--||||.|++.||.++=.|...| |.+..+|.++...+|..+.++|.++ +..|+++
T Consensus 256 GCGIVYCRTR~~cEq~AI~l~~~G-i~A~AYHAGLK~~ERTeVQe~WM~~-----------------------~~PvI~A 311 (641)
T KOG0352|consen 256 GCGIVYCRTRNECEQVAIMLEIAG-IPAMAYHAGLKKKERTEVQEKWMNN-----------------------EIPVIAA 311 (641)
T ss_pred cceEEEeccHHHHHHHHHHhhhcC-cchHHHhcccccchhHHHHHHHhcC-----------------------CCCEEEE
Confidence 457999999999999999999998 8999999999999999999999998 8999999
Q ss_pred ecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCCCCeEE
Q 031433 106 TDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAGTSFS 152 (159)
Q Consensus 106 Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~~g~~i 152 (159)
|.. +++|+|-|+|+.|||||+|.+...|.|..||+||.+....
T Consensus 312 T~S----FGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~Sy 354 (641)
T KOG0352|consen 312 TVS----FGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSY 354 (641)
T ss_pred Eec----cccccCCcceeEEEecCchhhhHHHHHhccccccCCCccc
Confidence 999 9999999999999999999999999999999988876544
|
|
| >PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=8.5e-14 Score=128.60 Aligned_cols=106 Identities=13% Similarity=0.180 Sum_probs=92.2
Q ss_pred HHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCC
Q 031433 11 LVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDE 90 (159)
Q Consensus 11 l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~ 90 (159)
|..||..+. ..+.|+||||+.....+.|.++|...+ +....++|+++.++|..++++|....
T Consensus 476 LdkLL~~Lk---~~g~KVLIFSQft~~LdiLed~L~~~g-~~y~rIdGsts~~eRq~~Id~Fn~~~-------------- 537 (1033)
T PLN03142 476 LDKLLPKLK---ERDSRVLIFSQMTRLLDILEDYLMYRG-YQYCRIDGNTGGEDRDASIDAFNKPG-------------- 537 (1033)
T ss_pred HHHHHHHHH---hcCCeEEeehhHHHHHHHHHHHHHHcC-CcEEEECCCCCHHHHHHHHHHhcccc--------------
Confidence 344444443 357899999999999999999999888 69999999999999999999998741
Q ss_pred CCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcc
Q 031433 91 SETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC 144 (159)
Q Consensus 91 ~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~ 144 (159)
++..-+|++|.+ .+.|||++.+++||+||+||||..+.|++||+
T Consensus 538 ------s~~~VfLLSTrA----GGlGINLt~Ad~VIiyD~dWNP~~d~QAidRa 581 (1033)
T PLN03142 538 ------SEKFVFLLSTRA----GGLGINLATADIVILYDSDWNPQVDLQAQDRA 581 (1033)
T ss_pred ------CCceEEEEeccc----cccCCchhhCCEEEEeCCCCChHHHHHHHHHh
Confidence 113567899999 99999999999999999999999999999999
|
|
| >PRK14701 reverse gyrase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.5e-14 Score=138.45 Aligned_cols=84 Identities=8% Similarity=0.122 Sum_probs=76.2
Q ss_pred CCcEEEEeCchHH---HHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCcee
Q 031433 25 GLPMIVCCSSRDE---LDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSH 101 (159)
Q Consensus 25 ~~k~iIF~ns~~~---~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (159)
+.+.||||++++. ++.+++.|.+.| +++..+||+ |.+++++|++| +.+
T Consensus 330 g~~gIVF~~t~~~~e~ae~la~~L~~~G-i~a~~~h~~-----R~~~l~~F~~G-----------------------~~~ 380 (1638)
T PRK14701 330 GKGGLIFVPIDEGAEKAEEIEKYLLEDG-FKIELVSAK-----NKKGFDLFEEG-----------------------EID 380 (1638)
T ss_pred CCCeEEEEeccccchHHHHHHHHHHHCC-CeEEEecch-----HHHHHHHHHcC-----------------------CCC
Confidence 4789999999886 489999999998 799999995 88999999999 899
Q ss_pred EEEEe----cCCCCCCcCCCCCCC-CCeEEEccCCC---ChhHHHhhh
Q 031433 102 MIVVT----DACLPLLSSGESAIS-ARVLINYELPT---KKETYIRRM 141 (159)
Q Consensus 102 vLV~T----d~~~~~~~rGid~~~-v~~VI~~d~P~---~~~~yi~R~ 141 (159)
|||+| |+ ++||||+|+ |++|||||+|. +.+.|.|..
T Consensus 381 VLVaT~s~~gv----aaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~ 424 (1638)
T PRK14701 381 YLIGVATYYGT----LVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTI 424 (1638)
T ss_pred EEEEecCCCCe----eEecCccCCccCEEEEeCCCCCCcchhhcccch
Confidence 99999 58 999999999 99999999999 888777765
|
|
| >TIGR01054 rgy reverse gyrase | Back alignment and domain information |
|---|
Probab=99.50 E-value=9.2e-14 Score=130.31 Aligned_cols=77 Identities=16% Similarity=0.193 Sum_probs=71.1
Q ss_pred CCcEEEEeCch---HHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCcee
Q 031433 25 GLPMIVCCSSR---DELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSH 101 (159)
Q Consensus 25 ~~k~iIF~ns~---~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (159)
+.++||||+++ +.++++++.|++.| +.+..+||+|++ .++++|++| +.+
T Consensus 326 ~~~~IVFv~t~~~~~~a~~l~~~L~~~g-~~a~~lhg~~~~----~~l~~Fr~G-----------------------~~~ 377 (1171)
T TIGR01054 326 GTGGIVYVSIDYGKEKAEEIAEFLENHG-VKAVAYHATKPK----EDYEKFAEG-----------------------EID 377 (1171)
T ss_pred CCCEEEEEeccccHHHHHHHHHHHHhCC-ceEEEEeCCCCH----HHHHHHHcC-----------------------CCC
Confidence 36899999999 99999999999998 799999999973 689999999 899
Q ss_pred EEEE----ecCCCCCCcCCCCCCC-CCeEEEccCCCC
Q 031433 102 MIVV----TDACLPLLSSGESAIS-ARVLINYELPTK 133 (159)
Q Consensus 102 vLV~----Td~~~~~~~rGid~~~-v~~VI~~d~P~~ 133 (159)
|||+ ||+ ++||||+|+ |++|||||+|..
T Consensus 378 vLVata~~tdv----~aRGIDip~~V~~vI~~~~P~~ 410 (1171)
T TIGR01054 378 VLIGVASYYGT----LVRGLDLPERVRYAVFLGVPKF 410 (1171)
T ss_pred EEEEeccccCc----ccccCCCCccccEEEEECCCCE
Confidence 9999 499 999999999 899999999974
|
Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA. |
| >COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.49 E-value=9.1e-13 Score=112.88 Aligned_cols=94 Identities=21% Similarity=0.305 Sum_probs=89.7
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEE
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMI 103 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL 103 (159)
.+.+++|||.++.+++.++..+...+ + +..++++.++++|..++++|+.+ .+++|
T Consensus 282 ~~~~~lif~~~~~~a~~i~~~~~~~~-~-~~~it~~t~~~eR~~il~~fr~g-----------------------~~~~l 336 (442)
T COG1061 282 RGDKTLIFASDVEHAYEIAKLFLAPG-I-VEAITGETPKEEREAILERFRTG-----------------------GIKVL 336 (442)
T ss_pred CCCcEEEEeccHHHHHHHHHHhcCCC-c-eEEEECCCCHHHHHHHHHHHHcC-----------------------CCCEE
Confidence 46899999999999999999999887 4 89999999999999999999998 79999
Q ss_pred EEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccC
Q 031433 104 VVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLA 146 (159)
Q Consensus 104 V~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~ 146 (159)
+++.+ +.+|+|+|+++++|......++..|+||+||..|
T Consensus 337 v~~~v----l~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR 375 (442)
T COG1061 337 VTVKV----LDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLR 375 (442)
T ss_pred EEeee----ccceecCCCCcEEEEeCCCCcHHHHHHHhhhhcc
Confidence 99999 9999999999999999999999999999999955
|
|
| >PRK13104 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.7e-12 Score=116.54 Aligned_cols=125 Identities=16% Similarity=0.129 Sum_probs=106.5
Q ss_pred eecCcHHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhccccccccc
Q 031433 3 VSFTFQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQK 82 (159)
Q Consensus 3 v~~~~~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~ 82 (159)
||.+..++...+++.+......+.++||||+|++.++.+++.|.+.| +.+..||+.+.+++|..+.++|+.|
T Consensus 422 v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~~g-i~h~vLnak~~q~Ea~iia~Ag~~G------- 493 (896)
T PRK13104 422 VYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKKEN-IKHQVLNAKFHEKEAQIIAEAGRPG------- 493 (896)
T ss_pred EEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcC-CCeEeecCCCChHHHHHHHhCCCCC-------
Confidence 56677777777777776556778999999999999999999999998 8999999999999999999999997
Q ss_pred ccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCC--------------------------------------Ce
Q 031433 83 VTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISA--------------------------------------RV 124 (159)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v--------------------------------------~~ 124 (159)
. |+||||+ ++||+|+.-- =+
T Consensus 494 ----------------~--VtIATNm----AGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~ 551 (896)
T PRK13104 494 ----------------A--VTIATNM----AGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLR 551 (896)
T ss_pred ----------------c--EEEeccC----ccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCE
Confidence 3 9999999 9999999732 26
Q ss_pred EEEccCCCChhHHHhhhhcccCCC--CeEEEEEEe
Q 031433 125 LINYELPTKKETYIRRMTTCLAAG--TSFSDIILL 157 (159)
Q Consensus 125 VI~~d~P~~~~~yi~R~GR~~~~~--g~~i~~v~~ 157 (159)
||--+.+.|..-=-|=.||+||+| |.+--|++|
T Consensus 552 VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSl 586 (896)
T PRK13104 552 IIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSL 586 (896)
T ss_pred EEeeccCchHHHHHHhccccccCCCCCceEEEEEc
Confidence 888888888888889899998775 666666654
|
|
| >PRK12904 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.40 E-value=5e-12 Score=114.46 Aligned_cols=125 Identities=14% Similarity=0.107 Sum_probs=104.0
Q ss_pred eecCcHHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhccccccccc
Q 031433 3 VSFTFQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQK 82 (159)
Q Consensus 3 v~~~~~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~ 82 (159)
++.+..++...+.+.+......+.++||||+|++.++.+++.|.+.+ +.+..||+. +.+|...+.+|+.+
T Consensus 408 i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~g-i~~~vLnak--q~eREa~Iia~Ag~------- 477 (830)
T PRK12904 408 IYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAG-IPHNVLNAK--NHEREAEIIAQAGR------- 477 (830)
T ss_pred EEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCC-CceEeccCc--hHHHHHHHHHhcCC-------
Confidence 45555666666666554324567999999999999999999999998 799999995 88999999999998
Q ss_pred ccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCC--------------------------------------Ce
Q 031433 83 VTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISA--------------------------------------RV 124 (159)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v--------------------------------------~~ 124 (159)
+..|+||||+ ++||+|++-- =|
T Consensus 478 ----------------~g~VtIATNm----AGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLh 537 (830)
T PRK12904 478 ----------------PGAVTIATNM----AGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLH 537 (830)
T ss_pred ----------------CceEEEeccc----ccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCE
Confidence 8999999999 9999999754 26
Q ss_pred EEEccCCCChhHHHhhhhcccCCC--CeEEEEEEe
Q 031433 125 LINYELPTKKETYIRRMTTCLAAG--TSFSDIILL 157 (159)
Q Consensus 125 VI~~d~P~~~~~yi~R~GR~~~~~--g~~i~~v~~ 157 (159)
||--..|.|..---|=.||+||+| |.+--|++|
T Consensus 538 VigTerhesrRid~QlrGRagRQGdpGss~f~lSl 572 (830)
T PRK12904 538 VIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSL 572 (830)
T ss_pred EEecccCchHHHHHHhhcccccCCCCCceeEEEEc
Confidence 899999999999999999998775 666666654
|
|
| >KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.6e-13 Score=108.03 Aligned_cols=51 Identities=20% Similarity=0.369 Sum_probs=47.1
Q ss_pred EEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccC--CCCeEEEEEEe
Q 031433 103 IVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLA--AGTSFSDIILL 157 (159)
Q Consensus 103 LV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~--~~g~~i~~v~~ 157 (159)
+|+|++ ++||+|+..++.|+|||+|.++++|+||+||+|| .+|.+|+|+..
T Consensus 302 ~vat~l----fgrgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfGtkglaitfvs~ 354 (387)
T KOG0329|consen 302 LVATDL----FGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSD 354 (387)
T ss_pred hHHhhh----hccccCcccceeeeccCCCCCchHHHHHhhhhhccccccceeehhcc
Confidence 899999 9999999999999999999999999999999954 56899998763
|
|
| >KOG0353 consensus ATP-dependent DNA helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.1e-12 Score=109.46 Aligned_cols=105 Identities=21% Similarity=0.350 Sum_probs=93.5
Q ss_pred HHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCC
Q 031433 10 TLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGD 89 (159)
Q Consensus 10 ~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~ 89 (159)
...++.+ +.+..-.++.-||||-+++.++.++..|.+.| |.+..+|..|.+++|..+-+.|-.|
T Consensus 303 ~~edi~k-~i~~~f~gqsgiiyc~sq~d~ekva~alkn~g-i~a~~yha~lep~dks~~hq~w~a~-------------- 366 (695)
T KOG0353|consen 303 CIEDIAK-LIKGDFAGQSGIIYCFSQKDCEKVAKALKNHG-IHAGAYHANLEPEDKSGAHQGWIAG-------------- 366 (695)
T ss_pred HHHHHHH-HhccccCCCcceEEEeccccHHHHHHHHHhcC-ccccccccccCcccccccccccccc--------------
Confidence 3334444 55546678999999999999999999999998 8999999999999999999999998
Q ss_pred CCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhc
Q 031433 90 ESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTT 143 (159)
Q Consensus 90 ~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR 143 (159)
+++|+|+|-+ +++|||-|+|+.|||-.+|.+++.|.|...|
T Consensus 367 ---------eiqvivatva----fgmgidkpdvrfvihhsl~ksienyyqasar 407 (695)
T KOG0353|consen 367 ---------EIQVIVATVA----FGMGIDKPDVRFVIHHSLPKSIENYYQASAR 407 (695)
T ss_pred ---------ceEEEEEEee----ecccCCCCCeeEEEecccchhHHHHHHHHHH
Confidence 8999999999 9999999999999999999999999994433
|
|
| >PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=6.9e-12 Score=117.33 Aligned_cols=95 Identities=11% Similarity=0.167 Sum_probs=81.4
Q ss_pred CCcEEEEeCchHHHHHHHHHHhcC-----CC---ccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCC
Q 031433 25 GLPMIVCCSSRDELDAVCSAVSNL-----AD---ISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKD 96 (159)
Q Consensus 25 ~~k~iIF~ns~~~~~~l~~~L~~~-----~~---i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~ 96 (159)
+.|+||||.++++++.+++.|.+. +. -.+..+||+++ ++.+++++|++++
T Consensus 698 ~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~-------------------- 755 (1123)
T PRK11448 698 EGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNER-------------------- 755 (1123)
T ss_pred CCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCC--------------------
Confidence 479999999999999999988753 11 24567999875 5678999999872
Q ss_pred CCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCC
Q 031433 97 EHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAA 147 (159)
Q Consensus 97 ~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~ 147 (159)
..+|+|++|+ +++|+|+|.+++||+++.|.|...|+|++||+.|.
T Consensus 756 --~p~IlVsvdm----L~TG~DvP~v~~vVf~rpvkS~~lf~QmIGRgtR~ 800 (1123)
T PRK11448 756 --LPNIVVTVDL----LTTGIDVPSICNLVFLRRVRSRILYEQMLGRATRL 800 (1123)
T ss_pred --CCeEEEEecc----cccCCCcccccEEEEecCCCCHHHHHHHHhhhccC
Confidence 3479999999 99999999999999999999999999999999663
|
|
| >COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.2e-12 Score=110.02 Aligned_cols=116 Identities=15% Similarity=0.191 Sum_probs=102.9
Q ss_pred HHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCC
Q 031433 11 LVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDE 90 (159)
Q Consensus 11 l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~ 90 (159)
..+|+..+......+.+++|-+=|++.++.|.++|.+.| +++.++|++...-+|.+++++.|.|
T Consensus 432 vdDL~~EI~~r~~~~eRvLVTtLTKkmAEdLT~Yl~e~g-ikv~YlHSdidTlER~eIirdLR~G--------------- 495 (663)
T COG0556 432 VDDLLSEIRKRVAKNERVLVTTLTKKMAEDLTEYLKELG-IKVRYLHSDIDTLERVEIIRDLRLG--------------- 495 (663)
T ss_pred HHHHHHHHHHHHhcCCeEEEEeehHHHHHHHHHHHHhcC-ceEEeeeccchHHHHHHHHHHHhcC---------------
Confidence 344555554434456999999999999999999999998 8999999999999999999999999
Q ss_pred CCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEcc-----CCCChhHHHhhhhcccCC-CCeEEEE
Q 031433 91 SETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYE-----LPTKKETYIRRMTTCLAA-GTSFSDI 154 (159)
Q Consensus 91 ~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d-----~P~~~~~yi~R~GR~~~~-~g~~i~~ 154 (159)
...|||--++ +.+|+|+|.|++|..+| +.++-.+++|=+||++|+ .|.+|.+
T Consensus 496 --------~~DvLVGINL----LREGLDiPEVsLVAIlDADKeGFLRse~SLIQtIGRAARN~~GkvIlY 553 (663)
T COG0556 496 --------EFDVLVGINL----LREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKVILY 553 (663)
T ss_pred --------CccEEEeehh----hhccCCCcceeEEEEeecCccccccccchHHHHHHHHhhccCCeEEEE
Confidence 8999999999 99999999999999888 568899999999999776 5888875
|
|
| >PRK13107 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.37 E-value=6.2e-12 Score=114.14 Aligned_cols=125 Identities=14% Similarity=0.163 Sum_probs=107.5
Q ss_pred eecCcHHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhccccccccc
Q 031433 3 VSFTFQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQK 82 (159)
Q Consensus 3 v~~~~~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~ 82 (159)
+|.+..++...+++.+......+.++||||+|++.++.+++.|...+ +.+..||+++.+.++..+.+.|+.|
T Consensus 427 iy~t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ls~~L~~~g-i~~~vLnak~~~~Ea~ii~~Ag~~G------- 498 (908)
T PRK13107 427 VYLTADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLARLMVKEK-IPHEVLNAKFHEREAEIVAQAGRTG------- 498 (908)
T ss_pred EEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHHHHHHHHCC-CCeEeccCcccHHHHHHHHhCCCCC-------
Confidence 56677777777887776656779999999999999999999999998 7999999999999999999999998
Q ss_pred ccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCC-------------------------------------CeE
Q 031433 83 VTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISA-------------------------------------RVL 125 (159)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v-------------------------------------~~V 125 (159)
. |+|||++ ++||+|+.-- =+|
T Consensus 499 ----------------~--VtIATnm----AGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~V 556 (908)
T PRK13107 499 ----------------A--VTIATNM----AGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHI 556 (908)
T ss_pred ----------------c--EEEecCC----cCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEE
Confidence 4 9999999 9999999732 278
Q ss_pred EEccCCCChhHHHhhhhcccCCC--CeEEEEEEe
Q 031433 126 INYELPTKKETYIRRMTTCLAAG--TSFSDIILL 157 (159)
Q Consensus 126 I~~d~P~~~~~yi~R~GR~~~~~--g~~i~~v~~ 157 (159)
|--+.|.|..-=-|=.||+||+| |.+.-|++|
T Consensus 557 IgTerheSrRID~QLrGRaGRQGDPGss~f~lSl 590 (908)
T PRK13107 557 LGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSM 590 (908)
T ss_pred EecccCchHHHHhhhhcccccCCCCCceeEEEEe
Confidence 88889998888889999998775 666666654
|
|
| >COG1202 Superfamily II helicase, archaea-specific [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.6e-12 Score=111.44 Aligned_cols=103 Identities=16% Similarity=0.182 Sum_probs=88.6
Q ss_pred CCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEEE
Q 031433 25 GLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIV 104 (159)
Q Consensus 25 ~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLV 104 (159)
..|+|||+||++.|..|+++|..+| +++..+|++|+..+|+.+-.+|.++ .+.++|
T Consensus 440 rGQtIVFT~SRrr~h~lA~~L~~kG-~~a~pYHaGL~y~eRk~vE~~F~~q-----------------------~l~~VV 495 (830)
T COG1202 440 RGQTIVFTYSRRRCHELADALTGKG-LKAAPYHAGLPYKERKSVERAFAAQ-----------------------ELAAVV 495 (830)
T ss_pred CCceEEEecchhhHHHHHHHhhcCC-cccccccCCCcHHHHHHHHHHHhcC-----------------------CcceEe
Confidence 4899999999999999999999998 8999999999999999999999998 899999
Q ss_pred EecCCCCCCcCCCCCCCCCeEE---EccCCC-ChhHHHhhhhcccCC----CCeEEEEE
Q 031433 105 VTDACLPLLSSGESAISARVLI---NYELPT-KKETYIRRMTTCLAA----GTSFSDII 155 (159)
Q Consensus 105 ~Td~~~~~~~rGid~~~v~~VI---~~d~P~-~~~~yi~R~GR~~~~----~g~~i~~v 155 (159)
+|-+ ++-|+|||.-.+|+ -...-| ++.+|.|..||+||- .|.++-++
T Consensus 496 TTAA----L~AGVDFPASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllv 550 (830)
T COG1202 496 TTAA----LAAGVDFPASQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLV 550 (830)
T ss_pred ehhh----hhcCCCCchHHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEe
Confidence 9999 99999999765442 122333 789999999999775 46666554
|
|
| >TIGR00595 priA primosomal protein N' | Back alignment and domain information |
|---|
Probab=99.32 E-value=5.2e-12 Score=109.88 Aligned_cols=88 Identities=11% Similarity=0.172 Sum_probs=72.0
Q ss_pred HHHHHHHHhcC-CCccEEEeecCCCHHHH--HHHHHHHhcccccccccccccCCCCCCCCCCCCceeEEEEecCCCCCCc
Q 031433 38 LDAVCSAVSNL-ADISFSSLHSDLAETER--TLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLS 114 (159)
Q Consensus 38 ~~~l~~~L~~~-~~i~~~~l~~~~~~~~R--~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~ 114 (159)
++.+.+.|.+. +...+..+|++++...+ .+++++|++| +.+|||+|++ ++
T Consensus 271 te~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g-----------------------~~~ILVgT~~----i~ 323 (505)
T TIGR00595 271 TEQVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFANG-----------------------KADILIGTQM----IA 323 (505)
T ss_pred HHHHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhcC-----------------------CCCEEEeCcc----cc
Confidence 57888888876 33689999999987666 8899999998 8999999999 99
Q ss_pred CCCCCCCCCeE--EEccCCC----------ChhHHHhhhhcccCC--CCeEE
Q 031433 115 SGESAISARVL--INYELPT----------KKETYIRRMTTCLAA--GTSFS 152 (159)
Q Consensus 115 rGid~~~v~~V--I~~d~P~----------~~~~yi~R~GR~~~~--~g~~i 152 (159)
+|+|+++|++| +|+|..- ....|+|++||+||. +|.++
T Consensus 324 kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~vi 375 (505)
T TIGR00595 324 KGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVI 375 (505)
T ss_pred cCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEE
Confidence 99999999987 5777532 245789999999774 45554
|
All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK05580 primosome assembly protein PriA; Validated | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.3e-11 Score=110.64 Aligned_cols=89 Identities=10% Similarity=0.159 Sum_probs=72.8
Q ss_pred HHHHHHHHHhcC-CCccEEEeecCCC--HHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEEEEecCCCCCC
Q 031433 37 ELDAVCSAVSNL-ADISFSSLHSDLA--ETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLL 113 (159)
Q Consensus 37 ~~~~l~~~L~~~-~~i~~~~l~~~~~--~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~ 113 (159)
.++.+.+.|++. ++..+..+|+++. ++++.+++++|++| +.+|||+|++ +
T Consensus 438 G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g-----------------------~~~ILVgT~~----i 490 (679)
T PRK05580 438 GTERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARG-----------------------EADILIGTQM----L 490 (679)
T ss_pred cHHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcC-----------------------CCCEEEEChh----h
Confidence 467888888875 3368999999986 56799999999998 8999999999 9
Q ss_pred cCCCCCCCCCeE--EEccCCCCh----------hHHHhhhhcccCC--CCeEE
Q 031433 114 SSGESAISARVL--INYELPTKK----------ETYIRRMTTCLAA--GTSFS 152 (159)
Q Consensus 114 ~rGid~~~v~~V--I~~d~P~~~----------~~yi~R~GR~~~~--~g~~i 152 (159)
++|+|+|+|++| ++.|.+-+. ..|+|++||+||. +|.++
T Consensus 491 akG~d~p~v~lV~il~aD~~l~~pdfra~Er~~~~l~q~~GRagR~~~~g~vi 543 (679)
T PRK05580 491 AKGHDFPNVTLVGVLDADLGLFSPDFRASERTFQLLTQVAGRAGRAEKPGEVL 543 (679)
T ss_pred ccCCCCCCcCEEEEEcCchhccCCccchHHHHHHHHHHHHhhccCCCCCCEEE
Confidence 999999999998 566666443 5689999999774 45544
|
|
| >COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.26 E-value=6.6e-11 Score=97.49 Aligned_cols=100 Identities=19% Similarity=0.323 Sum_probs=84.9
Q ss_pred ccCCCCCcEEEEeCchHHHHHHHHHHhc-CCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCC
Q 031433 20 AGRRPGLPMIVCCSSRDELDAVCSAVSN-LADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEH 98 (159)
Q Consensus 20 ~~~~~~~k~iIF~ns~~~~~~l~~~L~~-~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (159)
+....+.+++||+++....+.++..|+. .+...+..+|+. ...|.+..++||+|
T Consensus 300 kq~~~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~G----------------------- 354 (441)
T COG4098 300 KQRKTGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSE--DQHRKEKVEAFRDG----------------------- 354 (441)
T ss_pred HHHhcCCcEEEEecchHHHHHHHHHHHhhCCccceeeeecc--CccHHHHHHHHHcC-----------------------
Confidence 3356689999999999999999999954 455677899985 46889999999999
Q ss_pred ceeEEEEecCCCCCCcCCCCCCCCCe-EEEccCC-CChhHHHhhhhcccCCC
Q 031433 99 KSHMIVVTDACLPLLSSGESAISARV-LINYELP-TKKETYIRRMTTCLAAG 148 (159)
Q Consensus 99 ~~~vLV~Td~~~~~~~rGid~~~v~~-VI~~d~P-~~~~~yi~R~GR~~~~~ 148 (159)
+.++||+|.+ ++||+.+|+|++ |+.-+-+ .+.+.++|-+||+||.-
T Consensus 355 ~~~lLiTTTI----LERGVTfp~vdV~Vlgaeh~vfTesaLVQIaGRvGRs~ 402 (441)
T COG4098 355 KITLLITTTI----LERGVTFPNVDVFVLGAEHRVFTESALVQIAGRVGRSL 402 (441)
T ss_pred ceEEEEEeeh----hhcccccccceEEEecCCcccccHHHHHHHhhhccCCC
Confidence 9999999999 999999999998 5555444 57889999999998763
|
|
| >COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=9.7e-11 Score=107.22 Aligned_cols=106 Identities=20% Similarity=0.252 Sum_probs=92.6
Q ss_pred CCCcEEEEeCchHHHHHHH----HHHhcCC---CccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCC
Q 031433 24 PGLPMIVCCSSRDELDAVC----SAVSNLA---DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKD 96 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~----~~L~~~~---~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~ 96 (159)
.+-++|+|+.+++.++.+. +.+...+ ...+...+++|..++|.++..+|+.|
T Consensus 305 ~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g--------------------- 363 (851)
T COG1205 305 NGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEG--------------------- 363 (851)
T ss_pred cCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcC---------------------
Confidence 4689999999999999996 3333333 12688888999999999999999999
Q ss_pred CCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCC-ChhHHHhhhhcccCCCCeEEEEEE
Q 031433 97 EHKSHMIVVTDACLPLLSSGESAISARVLINYELPT-KKETYIRRMTTCLAAGTSFSDIIL 156 (159)
Q Consensus 97 ~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~-~~~~yi~R~GR~~~~~g~~i~~v~ 156 (159)
++.++++|.+ +.-|+|+.+++.||++..|. +..++.||.||+||++..+..+++
T Consensus 364 --~~~~~~st~A----lelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v 418 (851)
T COG1205 364 --ELLGVIATNA----LELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVV 418 (851)
T ss_pred --CccEEecchh----hhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEE
Confidence 8999999999 99999999999999999999 899999999999999866665554
|
|
| >COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=99.10 E-value=7.2e-10 Score=97.90 Aligned_cols=121 Identities=12% Similarity=0.193 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEeCchH--------HHHHHHHHHhcC-CCccEEEeecCCCHHHHHHHHHHHhcccccc
Q 031433 9 ETLVELLHLVVAGRRPGLPMIVCCSSRD--------ELDAVCSAVSNL-ADISFSSLHSDLAETERTLILEEFRHTAMKW 79 (159)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~k~iIF~ns~~--------~~~~l~~~L~~~-~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~ 79 (159)
+.+-++++.+.++-..+.|+.+-|+-.+ .++.+++.|+.. +..++..+||.|..+++.++|++|+++
T Consensus 457 ~~~~~v~e~i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~---- 532 (677)
T COG1200 457 ERRPEVYERIREEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEG---- 532 (677)
T ss_pred ccHHHHHHHHHHHHHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcC----
Confidence 4445555555554456899999998553 566777888754 345799999999999999999999999
Q ss_pred cccccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCC-CChhHHHhhhhcccCCCCeEEEEEE
Q 031433 80 NQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELP-TKKETYIRRMTTCLAAGTSFSDIIL 156 (159)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P-~~~~~yi~R~GR~~~~~g~~i~~v~ 156 (159)
+++|||||.+ .+-|+|+|+++++|-+|.= .-...+-|=-||+||.+-.+.+++.
T Consensus 533 -------------------e~~ILVaTTV----IEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll 587 (677)
T COG1200 533 -------------------EIDILVATTV----IEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLL 587 (677)
T ss_pred -------------------CCcEEEEeeE----EEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEE
Confidence 8999999999 9999999999998887754 3566777878899887777766654
|
|
| >COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=98.98 E-value=6.7e-09 Score=96.25 Aligned_cols=109 Identities=11% Similarity=0.118 Sum_probs=96.4
Q ss_pred CCCCCcEEEEeCchHHHHHHHHHHhcC-CCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCce
Q 031433 22 RRPGLPMIVCCSSRDELDAVCSAVSNL-ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKS 100 (159)
Q Consensus 22 ~~~~~k~iIF~ns~~~~~~l~~~L~~~-~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (159)
...+.|+..-+|..++.+.+++.|++. +...+.+.||.|+.++-..++.+|.+| +.
T Consensus 800 l~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g-----------------------~~ 856 (1139)
T COG1197 800 LLRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNG-----------------------EY 856 (1139)
T ss_pred HhcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcC-----------------------CC
Confidence 334789999999999999999999987 446899999999999999999999999 89
Q ss_pred eEEEEecCCCCCCcCCCCCCCCCeEEEccCC-CChhHHHhhhhcccCCCCeEEEEEEe
Q 031433 101 HMIVVTDACLPLLSSGESAISARVLINYELP-TKKETYIRRMTTCLAAGTSFSDIILL 157 (159)
Q Consensus 101 ~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P-~~~~~yi~R~GR~~~~~g~~i~~v~~ 157 (159)
+|||||.+ .+-|||+|+++.+|--+.- --.+.+-|=-||+||..-.++.++++
T Consensus 857 dVLv~TTI----IEtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS~~~AYAYfl~ 910 (1139)
T COG1197 857 DVLVCTTI----IETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSNKQAYAYFLY 910 (1139)
T ss_pred CEEEEeee----eecCcCCCCCceEEEeccccccHHHHHHhccccCCccceEEEEEee
Confidence 99999999 9999999999998765543 35778889999999999999888764
|
|
| >COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.9e-09 Score=96.41 Aligned_cols=103 Identities=17% Similarity=0.206 Sum_probs=84.0
Q ss_pred HccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCC
Q 031433 19 VAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEH 98 (159)
Q Consensus 19 ~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (159)
......+++++|-|||++.|.++++.|+..+. ++..+||.+....|.+.+++.++-- ...
T Consensus 434 ~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~-~v~LlHSRf~~~dR~~ke~~l~~~~-------------------~~~ 493 (733)
T COG1203 434 SEEVKEGKKVLVIVNTVDRAIELYEKLKEKGP-KVLLLHSRFTLKDREEKERELKKLF-------------------KQN 493 (733)
T ss_pred hhhhccCCcEEEEEecHHHHHHHHHHHHhcCC-CEEEEecccchhhHHHHHHHHHHHH-------------------hcc
Confidence 33356689999999999999999999999985 7999999999999999988765310 001
Q ss_pred ceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCCC
Q 031433 99 KSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAG 148 (159)
Q Consensus 99 ~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~~ 148 (159)
...|+|+|.+ .+-|+|+. .+++|- =+..+++.+||+|||.|.+
T Consensus 494 ~~~IvVaTQV----IEagvDid-fd~mIT--e~aPidSLIQR~GRv~R~g 536 (733)
T COG1203 494 EGFIVVATQV----IEAGVDID-FDVLIT--ELAPIDSLIQRAGRVNRHG 536 (733)
T ss_pred CCeEEEEeeE----EEEEeccc-cCeeee--cCCCHHHHHHHHHHHhhcc
Confidence 6899999999 99999976 566553 3556899999999996654
|
|
| >COG1204 Superfamily II helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.95 E-value=2e-09 Score=97.66 Aligned_cols=99 Identities=20% Similarity=0.281 Sum_probs=83.4
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhcC------------------CC------------------ccEEEeecCCCHHHHH
Q 031433 23 RPGLPMIVCCSSRDELDAVCSAVSNL------------------AD------------------ISFSSLHSDLAETERT 66 (159)
Q Consensus 23 ~~~~k~iIF~ns~~~~~~l~~~L~~~------------------~~------------------i~~~~l~~~~~~~~R~ 66 (159)
..+.+++|||+|++.+...++.|++. .. .-+...|++|+.++|.
T Consensus 251 ~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~ 330 (766)
T COG1204 251 AEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQ 330 (766)
T ss_pred hcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCCCHHHHH
Confidence 35789999999999999999999941 00 1245678999999999
Q ss_pred HHHHHHhcccccccccccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEE----Ecc-----CCCChhHH
Q 031433 67 LILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLI----NYE-----LPTKKETY 137 (159)
Q Consensus 67 ~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI----~~d-----~P~~~~~y 137 (159)
.+-+.|+.| .++||+||+. ++.|++.|.=..|| -|| .+-++.+|
T Consensus 331 ~vE~~Fr~g-----------------------~ikVlv~TpT----LA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv 383 (766)
T COG1204 331 LVEDAFRKG-----------------------KIKVLVSTPT----LAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDV 383 (766)
T ss_pred HHHHHHhcC-----------------------CceEEEechH----HhhhcCCcceEEEEeeeEEEcCCCCeEECchhhH
Confidence 999999999 8999999999 99999999766665 566 56678999
Q ss_pred HhhhhcccCCC
Q 031433 138 IRRMTTCLAAG 148 (159)
Q Consensus 138 i~R~GR~~~~~ 148 (159)
+|.+||+||-+
T Consensus 384 ~QM~GRAGRPg 394 (766)
T COG1204 384 LQMAGRAGRPG 394 (766)
T ss_pred hhccCcCCCCC
Confidence 99999997753
|
|
| >KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.3e-09 Score=92.50 Aligned_cols=105 Identities=17% Similarity=0.185 Sum_probs=88.9
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcC----C-C--ccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCC
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSNL----A-D--ISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKD 96 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~~----~-~--i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~ 96 (159)
.+-++|-||.+++.|+.+-...++. + + -.+..+.|+...++|.++-.+.-.|
T Consensus 524 ~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G--------------------- 582 (1034)
T KOG4150|consen 524 HGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGG--------------------- 582 (1034)
T ss_pred cCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCC---------------------
Confidence 3689999999999999887766653 1 1 1345667899999999999998887
Q ss_pred CCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCCCCeEEEEE
Q 031433 97 EHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAGTSFSDII 155 (159)
Q Consensus 97 ~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~~g~~i~~v 155 (159)
++.-+|+|++ ++-|||+...+.|++.++|.+...+.|..||+||+......++
T Consensus 583 --~L~giIaTNA----LELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavy 635 (1034)
T KOG4150|consen 583 --KLCGIIATNA----LELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVY 635 (1034)
T ss_pred --eeeEEEecch----hhhccccccceeEEEccCchhHHHHHHHhccccccCCCceEEE
Confidence 8999999999 9999999999999999999999999999999988775554433
|
|
| >KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.81 E-value=4.2e-08 Score=90.90 Aligned_cols=108 Identities=16% Similarity=0.215 Sum_probs=94.6
Q ss_pred cHHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhccccccccccccc
Q 031433 7 FQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQ 86 (159)
Q Consensus 7 ~~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~ 86 (159)
++++|.-||++|.. .+.+||||+.-.+..+-|...|+.+| ...+-|.|....++|+..+++|...+
T Consensus 1261 KLQtLAiLLqQLk~---eghRvLIfTQMtkmLDVLeqFLnyHg-ylY~RLDg~t~vEqRQaLmerFNaD~---------- 1326 (1958)
T KOG0391|consen 1261 KLQTLAILLQQLKS---EGHRVLIFTQMTKMLDVLEQFLNYHG-YLYVRLDGNTSVEQRQALMERFNADR---------- 1326 (1958)
T ss_pred hHHHHHHHHHHHHh---cCceEEehhHHHHHHHHHHHHHhhcc-eEEEEecCCccHHHHHHHHHHhcCCC----------
Confidence 67788888887754 57999999999999999999999998 59999999999999999999999973
Q ss_pred CCCCCCCCCCCCce-eEEEEecCCCCCCcCCCCCCCCCeEEEccCCCCh------hHHHhhhhcc
Q 031433 87 SGDESETGKDEHKS-HMIVVTDACLPLLSSGESAISARVLINYELPTKK------ETYIRRMTTC 144 (159)
Q Consensus 87 ~~~~~~~~~~~~~~-~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~------~~yi~R~GR~ 144 (159)
++ ..+++|-- .+-||++.+++.||.||--||+ .+..||||+|
T Consensus 1327 ------------RIfcfILSTrS----ggvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqt 1375 (1958)
T KOG0391|consen 1327 ------------RIFCFILSTRS----GGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQT 1375 (1958)
T ss_pred ------------ceEEEEEeccC----CccccccccCceEEEecCCCCchhhhHHHHHHHhhcCc
Confidence 33 45577888 8999999999999999999985 5788999987
|
|
| >KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription] | Back alignment and domain information |
|---|
Probab=98.77 E-value=6.6e-08 Score=89.78 Aligned_cols=98 Identities=13% Similarity=0.179 Sum_probs=90.1
Q ss_pred CCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCcee
Q 031433 22 RRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSH 101 (159)
Q Consensus 22 ~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (159)
...+.++|||..-++..+.|+++|...+ ...--|.|.+.-+-|+.+++.|.... +...-
T Consensus 696 k~~GHrVLIFSQMVRmLDIL~eYL~~r~-ypfQRLDGsvrgelRq~AIDhFnap~--------------------SddFv 754 (1373)
T KOG0384|consen 696 KEGGHRVLIFSQMVRMLDILAEYLSLRG-YPFQRLDGSVRGELRQQAIDHFNAPD--------------------SDDFV 754 (1373)
T ss_pred hcCCceEEEhHHHHHHHHHHHHHHHHcC-CcceeccCCcchHHHHHHHHhccCCC--------------------CCceE
Confidence 4467999999999999999999999998 59999999999999999999999873 22688
Q ss_pred EEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcc
Q 031433 102 MIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC 144 (159)
Q Consensus 102 vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~ 144 (159)
.|+||-+ .+-||++..++.||.||.-|||..=+|-..||
T Consensus 755 FLLSTRA----GGLGINLatADTVIIFDSDWNPQNDLQAqARa 793 (1373)
T KOG0384|consen 755 FLLSTRA----GGLGINLATADTVIIFDSDWNPQNDLQAQARA 793 (1373)
T ss_pred EEEeccc----CcccccccccceEEEeCCCCCcchHHHHHHHH
Confidence 9999999 99999999999999999999999999988887
|
|
| >PRK12903 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=98.77 E-value=9e-08 Score=87.14 Aligned_cols=125 Identities=10% Similarity=0.114 Sum_probs=97.7
Q ss_pred eecCcHHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhccccccccc
Q 031433 3 VSFTFQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQK 82 (159)
Q Consensus 3 v~~~~~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~ 82 (159)
++.+..++...+++.+......+.++||.|.|.+..+.|++.|.+.| +...+|+..-. ++...+=. +.|.
T Consensus 404 iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~g-i~h~vLNAk~~--e~EA~IIa-~AG~------ 473 (925)
T PRK12903 404 IFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEAN-IPHTVLNAKQN--AREAEIIA-KAGQ------ 473 (925)
T ss_pred EEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCC-CCceeecccch--hhHHHHHH-hCCC------
Confidence 45566677777777776655678999999999999999999999998 79999998533 33333322 3441
Q ss_pred ccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCC--------eEEEccCCCChhHHHhhhhcccCCC--CeEE
Q 031433 83 VTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISAR--------VLINYELPTKKETYIRRMTTCLAAG--TSFS 152 (159)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~--------~VI~~d~P~~~~~yi~R~GR~~~~~--g~~i 152 (159)
.-.|.|||++ ++||.|+.--. |||.-+.|.|..---|-.||+||+| |.+-
T Consensus 474 ----------------~GaVTIATNM----AGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~ 533 (925)
T PRK12903 474 ----------------KGAITIATNM----AGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESR 533 (925)
T ss_pred ----------------CCeEEEeccc----ccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcce
Confidence 5789999999 99999997544 8999999999988889999998776 6555
Q ss_pred EEEEe
Q 031433 153 DIILL 157 (159)
Q Consensus 153 ~~v~~ 157 (159)
-|++|
T Consensus 534 f~lSL 538 (925)
T PRK12903 534 FFISL 538 (925)
T ss_pred EEEec
Confidence 55553
|
|
| >KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription] | Back alignment and domain information |
|---|
Probab=98.66 E-value=3e-07 Score=82.39 Aligned_cols=106 Identities=18% Similarity=0.195 Sum_probs=91.0
Q ss_pred HHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCC
Q 031433 11 LVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDE 90 (159)
Q Consensus 11 l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~ 90 (159)
|-.||..|. ..+.++|||..--...+.|.++..-.+ ....-+.|.++.++|...++.|...++
T Consensus 476 LDkLL~~Lk---~~GhRVLIFSQmt~mLDILeDyc~~R~-y~ycRiDGSt~~eeR~~aI~~fn~~~s------------- 538 (971)
T KOG0385|consen 476 LDKLLPKLK---EQGHRVLIFSQMTRMLDILEDYCMLRG-YEYCRLDGSTSHEEREDAIEAFNAPPS------------- 538 (971)
T ss_pred HHHHHHHHH---hCCCeEEEeHHHHHHHHHHHHHHHhcC-ceeEeecCCCCcHHHHHHHHhcCCCCc-------------
Confidence 334555443 467999999999999999999998888 499999999999999999999998731
Q ss_pred CCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcc
Q 031433 91 SETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC 144 (159)
Q Consensus 91 ~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~ 144 (159)
...-.|++|-+ .+-||++..++.||.||.-|+|..=+|-+-||
T Consensus 539 -------~~FiFlLSTRA----GGLGINL~aADtVIlyDSDWNPQ~DLQAmDRa 581 (971)
T KOG0385|consen 539 -------EKFIFLLSTRA----GGLGINLTAADTVILYDSDWNPQVDLQAMDRA 581 (971)
T ss_pred -------ceEEEEEeccc----cccccccccccEEEEecCCCCchhhhHHHHHH
Confidence 15667899999 99999999999999999999999888877777
|
|
| >KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.5e-07 Score=82.59 Aligned_cols=101 Identities=13% Similarity=0.123 Sum_probs=83.5
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeE
Q 031433 23 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHM 102 (159)
Q Consensus 23 ~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 102 (159)
....++++-.|.+.+.+.+.+..+-.| ..+..|||.|+..+|+++++.|....+. ..-.
T Consensus 593 k~~~~~v~Isny~~tldl~e~~~~~~g-~~~~rLdG~~~~~qRq~~vd~FN~p~~~--------------------~~vf 651 (776)
T KOG0390|consen 593 KLLVKSVLISNYTQTLDLFEQLCRWRG-YEVLRLDGKTSIKQRQKLVDTFNDPESP--------------------SFVF 651 (776)
T ss_pred hcceEEEEeccHHHHHHHHHHHHhhcC-ceEEEEcCCCchHHHHHHHHhccCCCCC--------------------ceEE
Confidence 334666666777788787777777777 6999999999999999999999987311 2335
Q ss_pred EEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCCC
Q 031433 103 IVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAG 148 (159)
Q Consensus 103 LV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~~ 148 (159)
|.+|-+ .+.||++-+++.||.||++|||..=.|-++|+.|.|
T Consensus 652 LlSsKA----gg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdG 693 (776)
T KOG0390|consen 652 LLSSKA----GGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDG 693 (776)
T ss_pred EEeccc----ccCceeecccceEEEeCCCCCchhHHHHHHHhccCC
Confidence 577888 899999999999999999999999999999995544
|
|
| >KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.2e-07 Score=86.39 Aligned_cols=97 Identities=23% Similarity=0.364 Sum_probs=81.0
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcC--------------------------------------CCccEEEeecCCCHHHH
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSNL--------------------------------------ADISFSSLHSDLAETER 65 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~~--------------------------------------~~i~~~~l~~~~~~~~R 65 (159)
.+.++||||.+++.|+.++..+... . .-+.+.|.+++.++|
T Consensus 459 e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~-~GvAyHhaGLT~eER 537 (1008)
T KOG0950|consen 459 EGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTIP-YGVAYHHAGLTSEER 537 (1008)
T ss_pred cCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheecc-ccceecccccccchH
Confidence 3577999999999998877655432 1 247788999999999
Q ss_pred HHHHHHHhcccccccccccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccC----CCChhHHHhhh
Q 031433 66 TLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYEL----PTKKETYIRRM 141 (159)
Q Consensus 66 ~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~----P~~~~~yi~R~ 141 (159)
+.+-..|+.| ...|++||+. ++-|.+.|..+++|-.-. +-+.-.|.|++
T Consensus 538 ~~iE~afr~g-----------------------~i~vl~aTST----laaGVNLPArRVIiraP~~g~~~l~~~~YkQM~ 590 (1008)
T KOG0950|consen 538 EIIEAAFREG-----------------------NIFVLVATST----LAAGVNLPARRVIIRAPYVGREFLTRLEYKQMV 590 (1008)
T ss_pred HHHHHHHHhc-----------------------CeEEEEecch----hhccCcCCcceeEEeCCccccchhhhhhHHhhh
Confidence 9999999999 8999999999 999999999999986543 24677999999
Q ss_pred hcccCCC
Q 031433 142 TTCLAAG 148 (159)
Q Consensus 142 GR~~~~~ 148 (159)
||+||.+
T Consensus 591 GRAGR~g 597 (1008)
T KOG0950|consen 591 GRAGRTG 597 (1008)
T ss_pred hhhhhcc
Confidence 9997764
|
|
| >PRK12326 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=98.63 E-value=5.8e-07 Score=80.82 Aligned_cols=125 Identities=14% Similarity=0.079 Sum_probs=98.6
Q ss_pred eecCcHHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhccccccccc
Q 031433 3 VSFTFQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQK 82 (159)
Q Consensus 3 v~~~~~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~ 82 (159)
+|.+..++...+++.+......+.++||.|.|.+..+.+++.|.+.+ ++..+|+..-..+| .+++.+ .|.
T Consensus 405 iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~g-I~h~vLNAk~~~~E-A~IIa~--AG~------ 474 (764)
T PRK12326 405 VYATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAG-VPAVVLNAKNDAEE-ARIIAE--AGK------ 474 (764)
T ss_pred eEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCC-CcceeeccCchHhH-HHHHHh--cCC------
Confidence 56667778888888777656789999999999999999999999998 89999998644333 333332 221
Q ss_pred ccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCC---------------CeEEEccCCCChhHHHhhhhcccCC
Q 031433 83 VTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISA---------------RVLINYELPTKKETYIRRMTTCLAA 147 (159)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v---------------~~VI~~d~P~~~~~yi~R~GR~~~~ 147 (159)
.-.|-|||++ ++||.|+.-- =|||--..|.|..---|=.||+||+
T Consensus 475 ----------------~gaVTIATNM----AGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQ 534 (764)
T PRK12326 475 ----------------YGAVTVSTQM----AGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQ 534 (764)
T ss_pred ----------------CCcEEEEecC----CCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccC
Confidence 5679999999 9999999732 2799999999999999999999877
Q ss_pred C--CeEEEEEEe
Q 031433 148 G--TSFSDIILL 157 (159)
Q Consensus 148 ~--g~~i~~v~~ 157 (159)
+ |.+.-|++|
T Consensus 535 GDpGss~f~lSl 546 (764)
T PRK12326 535 GDPGSSVFFVSL 546 (764)
T ss_pred CCCCceeEEEEc
Confidence 5 666666654
|
|
| >KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] | Back alignment and domain information |
|---|
Probab=98.57 E-value=3.9e-07 Score=84.90 Aligned_cols=95 Identities=15% Similarity=0.237 Sum_probs=83.4
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcC--CCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCcee
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSNL--ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSH 101 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~~--~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (159)
.+.+++|||.-++..+-+.+-|-+. +.+....|.|..++.+|.++.++|.+++ .++
T Consensus 1339 sqHRiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~Dp----------------------tID 1396 (1549)
T KOG0392|consen 1339 SQHRILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFNEDP----------------------TID 1396 (1549)
T ss_pred ccceeEEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHHhcCCC----------------------cee
Confidence 4689999999999999999988776 3234447889999999999999999984 788
Q ss_pred EE-EEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcc
Q 031433 102 MI-VVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC 144 (159)
Q Consensus 102 vL-V~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~ 144 (159)
|| ++|.+ .+-|+++.+++.||.++--|||..=+|-+-|+
T Consensus 1397 vLlLTThV----GGLGLNLTGADTVVFvEHDWNPMrDLQAMDRA 1436 (1549)
T KOG0392|consen 1397 VLLLTTHV----GGLGLNLTGADTVVFVEHDWNPMRDLQAMDRA 1436 (1549)
T ss_pred EEEEeeec----cccccccCCCceEEEEecCCCchhhHHHHHHH
Confidence 76 67889 99999999999999999999999888877777
|
|
| >KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.53 E-value=5.4e-07 Score=78.46 Aligned_cols=99 Identities=17% Similarity=0.231 Sum_probs=80.2
Q ss_pred CCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCcee
Q 031433 22 RRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSH 101 (159)
Q Consensus 22 ~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (159)
-.++. |||.. |++..-.+...+.+.+...+.+++|+++++.|.+.-..|... +.+.+
T Consensus 355 lk~GD-CvV~F-Skk~I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~---------------------~~e~d 411 (700)
T KOG0953|consen 355 LKPGD-CVVAF-SKKDIFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDP---------------------SNECD 411 (700)
T ss_pred CCCCC-eEEEe-ehhhHHHHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCCC---------------------CCccc
Confidence 33444 44433 677889999999998866799999999999999999999885 23799
Q ss_pred EEEEecCCCCCCcCCCCCCCCCeEEEccCC---------CChhHHHhhhhcccCCC
Q 031433 102 MIVVTDACLPLLSSGESAISARVLINYELP---------TKKETYIRRMTTCLAAG 148 (159)
Q Consensus 102 vLV~Td~~~~~~~rGid~~~v~~VI~~d~P---------~~~~~yi~R~GR~~~~~ 148 (159)
||||||+ .++|+++ +++-||.|++- -+...-.|-+||+||-+
T Consensus 412 vlVAsDA----IGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~ 462 (700)
T KOG0953|consen 412 VLVASDA----IGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFG 462 (700)
T ss_pred eEEeecc----ccccccc-ceeEEEEeecccCCcccceeccHHHHHHHhhcccccc
Confidence 9999999 9999996 57888888853 35677889999997764
|
|
| >COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.53 E-value=5.5e-07 Score=82.39 Aligned_cols=115 Identities=15% Similarity=0.200 Sum_probs=90.5
Q ss_pred HHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhc--C-CCccEEEeecCCCHHHHHHHHHHHhcccccccccccccC
Q 031433 11 LVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSN--L-ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQS 87 (159)
Q Consensus 11 l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~--~-~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~ 87 (159)
+...++.... ....-+|||.+-.+..+..++.|.+ . ..+.+..|||.++.++..++++.--.+
T Consensus 247 i~~~v~~~~~--~~~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~------------ 312 (845)
T COG1643 247 IVAAVDIHLR--EGSGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGG------------ 312 (845)
T ss_pred HHHHHHHhcc--CCCCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCC------------
Confidence 3344443333 3368899999999999999999997 2 247899999999999998866655554
Q ss_pred CCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccC------------------CCChhHHHhhhhcccCC-C
Q 031433 88 GDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYEL------------------PTKKETYIRRMTTCLAA-G 148 (159)
Q Consensus 88 ~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~------------------P~~~~~yi~R~GR~~~~-~ 148 (159)
+.+|+++|++ ++-+|.+++|++||.-.. |-+-.+-.||.|||||- .
T Consensus 313 -----------~RKVVlATNI----AETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~p 377 (845)
T COG1643 313 -----------KRKVVLATNI----AETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTGP 377 (845)
T ss_pred -----------cceEEEEccc----cccceeeCCeEEEecCCcccccccccccCceeeeEEEechhhhhhhccccccCCC
Confidence 5779999999 999999999999996553 23456778999999886 4
Q ss_pred CeEEEE
Q 031433 149 TSFSDI 154 (159)
Q Consensus 149 g~~i~~ 154 (159)
|.|+-+
T Consensus 378 GicyRL 383 (845)
T COG1643 378 GICYRL 383 (845)
T ss_pred ceEEEe
Confidence 888765
|
|
| >KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.9e-06 Score=77.52 Aligned_cols=107 Identities=16% Similarity=0.192 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhc-CCCccEEEeecCCCHHHHHHHHHHHhccccccccccccc
Q 031433 8 QETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSN-LADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQ 86 (159)
Q Consensus 8 ~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~-~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~ 86 (159)
.+.+.+||..- ..++.++|.|..++...+.|...|.. .+ +.+.-+.|..+...|..++++|..+.
T Consensus 532 m~vl~~ll~~W---~kqg~rvllFsqs~~mLdilE~fL~~~~~-ysylRmDGtT~~~~R~~lVd~Fne~~---------- 597 (923)
T KOG0387|consen 532 MKVLAKLLKDW---KKQGDRVLLFSQSRQMLDILESFLRRAKG-YSYLRMDGTTPAALRQKLVDRFNEDE---------- 597 (923)
T ss_pred HHHHHHHHHHH---hhCCCEEEEehhHHHHHHHHHHHHHhcCC-ceEEEecCCCccchhhHHHHhhcCCC----------
Confidence 34455555533 33567999999999999999999994 55 79999999999999999999999873
Q ss_pred CCCCCCCCCCCCcee-EEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcc
Q 031433 87 SGDESETGKDEHKSH-MIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC 144 (159)
Q Consensus 87 ~~~~~~~~~~~~~~~-vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~ 144 (159)
... .|++|-+ .+-|+++..++-||.||+-|||.+=.|-.-|+
T Consensus 598 ------------s~~VFLLTTrv----GGLGlNLTgAnRVIIfDPdWNPStD~QAreRa 640 (923)
T KOG0387|consen 598 ------------SIFVFLLTTRV----GGLGLNLTGANRVIIFDPDWNPSTDNQARERA 640 (923)
T ss_pred ------------ceEEEEEEecc----cccccccccCceEEEECCCCCCccchHHHHHH
Confidence 444 5688999 99999999999999999999999999987777
|
|
| >COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.46 E-value=3.4e-06 Score=76.59 Aligned_cols=108 Identities=15% Similarity=0.219 Sum_probs=90.7
Q ss_pred HHHHHHHH-HHHHccCCCCC--cEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhccccccccccc
Q 031433 8 QETLVELL-HLVVAGRRPGL--PMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVT 84 (159)
Q Consensus 8 ~~~l~~ll-~~l~~~~~~~~--k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~ 84 (159)
...+.+++ ..+.. .+. +++||++.....+.+.+.|...+ +....++|.++.++|...+++|..++
T Consensus 694 ~~~l~~ll~~~~~~---~~~~~kvlifsq~t~~l~il~~~l~~~~-~~~~~ldG~~~~~~r~~~i~~f~~~~-------- 761 (866)
T COG0553 694 LQALDELLLDKLLE---EGHYHKVLIFSQFTPVLDLLEDYLKALG-IKYVRLDGSTPAKRRQELIDRFNADE-------- 761 (866)
T ss_pred HHHHHHHHHHHHHh---hcccccEEEEeCcHHHHHHHHHHHHhcC-CcEEEEeCCCChhhHHHHHHHhhcCC--------
Confidence 34445555 33332 345 99999999999999999999998 79999999999999999999999962
Q ss_pred ccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcc
Q 031433 85 EQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC 144 (159)
Q Consensus 85 ~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~ 144 (159)
+..-.+++|.+ .+.|++...+++||+||..|++....|.+.|+
T Consensus 762 -------------~~~v~lls~ka----gg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa 804 (866)
T COG0553 762 -------------EEKVFLLSLKA----GGLGLNLTGADTVILFDPWWNPAVELQAIDRA 804 (866)
T ss_pred -------------CCceEEEEecc----cccceeecccceEEEeccccChHHHHHHHHHH
Confidence 13456677788 99999999999999999999999999988887
|
|
| >PRK12899 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.7e-06 Score=78.27 Aligned_cols=125 Identities=13% Similarity=0.137 Sum_probs=96.3
Q ss_pred eecCcHHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhccccccccc
Q 031433 3 VSFTFQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQK 82 (159)
Q Consensus 3 v~~~~~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~ 82 (159)
+|.+..++...+++.+......+.++||-|.|....+.++..|.+.+ +...+|+..-..+| ..++. ..|.
T Consensus 546 iy~t~~~k~~ai~~ei~~~~~~grPvLigt~si~~se~ls~~L~~~g-i~h~vLNak~~~~E-a~iia--~AG~------ 615 (970)
T PRK12899 546 FYMTEREKYHAIVAEIASIHRKGNPILIGTESVEVSEKLSRILRQNR-IEHTVLNAKNHAQE-AEIIA--GAGK------ 615 (970)
T ss_pred EecCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcC-CcceecccchhhhH-HHHHH--hcCC------
Confidence 45556677777777776656778999999999999999999999998 89999998633332 12332 2231
Q ss_pred ccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCC--------eEEEccCCCChhHHHhhhhcccCCC--CeEE
Q 031433 83 VTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISAR--------VLINYELPTKKETYIRRMTTCLAAG--TSFS 152 (159)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~--------~VI~~d~P~~~~~yi~R~GR~~~~~--g~~i 152 (159)
.-.|-|||++ ++||.|+.--. |||--..|.+...--|=.||+||+| |.+.
T Consensus 616 ----------------~g~VTIATNm----AGRGTDIkl~~~v~~~GGLhVIgTer~es~Rid~Ql~GRagRQGdpGss~ 675 (970)
T PRK12899 616 ----------------LGAVTVATNM----AGRGTDIKLDEEAVAVGGLYVIGTSRHQSRRIDRQLRGRCARLGDPGAAK 675 (970)
T ss_pred ----------------CCcEEEeecc----ccCCcccccCchHHhcCCcEEEeeccCchHHHHHHHhcccccCCCCCcee
Confidence 4679999999 99999995332 7999999999999999999998775 7666
Q ss_pred EEEEe
Q 031433 153 DIILL 157 (159)
Q Consensus 153 ~~v~~ 157 (159)
-|++|
T Consensus 676 f~lSl 680 (970)
T PRK12899 676 FFLSF 680 (970)
T ss_pred EEEEc
Confidence 66654
|
|
| >KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.7e-06 Score=79.30 Aligned_cols=109 Identities=17% Similarity=0.218 Sum_probs=80.9
Q ss_pred HHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCC--------------------------------------c
Q 031433 10 TLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLAD--------------------------------------I 51 (159)
Q Consensus 10 ~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~--------------------------------------i 51 (159)
...+++..+.+ ...-++||||=+++.|++-+++|...+. -
T Consensus 554 ~~l~lin~L~k--~~lLP~VvFvFSkkrCde~a~~L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~R 631 (1248)
T KOG0947|consen 554 TWLDLINHLRK--KNLLPVVVFVFSKKRCDEYADYLTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLR 631 (1248)
T ss_pred hHHHHHHHHhh--cccCceEEEEEccccHHHHHHHHhccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhh
Confidence 35566665543 3458999999999999999999987510 0
Q ss_pred cEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCC
Q 031433 52 SFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELP 131 (159)
Q Consensus 52 ~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P 131 (159)
-+.+.||++-+--+.-+--=|.+| -++||+||+. +++|++.|.-.+|+ -.+-
T Consensus 632 GiaVHH~GlLPivKE~VE~LFqrG-----------------------lVKVLFATET----FAMGVNMPARtvVF-~Sl~ 683 (1248)
T KOG0947|consen 632 GIAVHHGGLLPIVKEVVELLFQRG-----------------------LVKVLFATET----FAMGVNMPARTVVF-SSLR 683 (1248)
T ss_pred cchhhcccchHHHHHHHHHHHhcC-----------------------ceEEEeehhh----hhhhcCCCceeEEe-eehh
Confidence 145567777666655555567777 8999999999 99999999655554 3333
Q ss_pred ---------CChhHHHhhhhcccCCC
Q 031433 132 ---------TKKETYIRRMTTCLAAG 148 (159)
Q Consensus 132 ---------~~~~~yi~R~GR~~~~~ 148 (159)
-.|-+|.|.+||+||++
T Consensus 684 KhDG~efR~L~PGEytQMAGRAGRRG 709 (1248)
T KOG0947|consen 684 KHDGNEFRELLPGEYTQMAGRAGRRG 709 (1248)
T ss_pred hccCcceeecCChhHHhhhccccccc
Confidence 24789999999999986
|
|
| >PRK12901 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=98.35 E-value=3.9e-06 Score=77.83 Aligned_cols=125 Identities=16% Similarity=0.139 Sum_probs=98.2
Q ss_pred eecCcHHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhccccccccc
Q 031433 3 VSFTFQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQK 82 (159)
Q Consensus 3 v~~~~~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~ 82 (159)
||.+..++...+++.+......+.|+||-|.|.+..+.|++.|...+ +..-+|+.....+|- .++.+ .|.
T Consensus 606 vy~t~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~g-I~H~VLNAK~h~~EA-eIVA~--AG~------ 675 (1112)
T PRK12901 606 VYKTKREKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRK-IPHNVLNAKLHQKEA-EIVAE--AGQ------ 675 (1112)
T ss_pred EecCHHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcC-CcHHHhhccchhhHH-HHHHh--cCC------
Confidence 56677788888888777767789999999999999999999999998 788888876443332 22222 221
Q ss_pred ccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCC--------CCCeEEEccCCCChhHHHhhhhcccCCC--CeEE
Q 031433 83 VTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAI--------SARVLINYELPTKKETYIRRMTTCLAAG--TSFS 152 (159)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~--------~v~~VI~~d~P~~~~~yi~R~GR~~~~~--g~~i 152 (159)
.-.|-|||++ ++||.|+. +-=+||--..|.|..---|=.||+||+| |.+.
T Consensus 676 ----------------~GaVTIATNM----AGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~ 735 (1112)
T PRK12901 676 ----------------PGTVTIATNM----AGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQ 735 (1112)
T ss_pred ----------------CCcEEEeccC----cCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcce
Confidence 5679999999 99999997 3347999999999999999999998876 6666
Q ss_pred EEEEe
Q 031433 153 DIILL 157 (159)
Q Consensus 153 ~~v~~ 157 (159)
-|++|
T Consensus 736 f~lSL 740 (1112)
T PRK12901 736 FYVSL 740 (1112)
T ss_pred EEEEc
Confidence 66654
|
|
| >TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative | Back alignment and domain information |
|---|
Probab=98.34 E-value=9.2e-06 Score=74.96 Aligned_cols=92 Identities=16% Similarity=0.257 Sum_probs=66.9
Q ss_pred HHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCC-ccEEEeecCCCHHHHHHHHHHHhcccccccccccccCC
Q 031433 10 TLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLAD-ISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSG 88 (159)
Q Consensus 10 ~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~-i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~ 88 (159)
.+.+.+..+.. ..+.+++||++|.+..+.+++.|..... .....+..+.. ..|.+++++|+++
T Consensus 661 ~ia~~i~~l~~--~~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~~l~q~~~-~~r~~ll~~F~~~------------- 724 (850)
T TIGR01407 661 EIASYIIEITA--ITSPKILVLFTSYEMLHMVYDMLNELPEFEGYEVLAQGIN-GSRAKIKKRFNNG------------- 724 (850)
T ss_pred HHHHHHHHHHH--hcCCCEEEEeCCHHHHHHHHHHHhhhccccCceEEecCCC-ccHHHHHHHHHhC-------------
Confidence 44445554543 2346899999999999999999976210 01223333333 5788999999998
Q ss_pred CCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCe--EEEccCC
Q 031433 89 DESETGKDEHKSHMIVVTDACLPLLSSGESAISARV--LINYELP 131 (159)
Q Consensus 89 ~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~--VI~~d~P 131 (159)
+..||++|+. +.+|+|+++..+ ||...+|
T Consensus 725 ----------~~~iLlgt~s----f~EGVD~~g~~l~~viI~~LP 755 (850)
T TIGR01407 725 ----------EKAILLGTSS----FWEGVDFPGNGLVCLVIPRLP 755 (850)
T ss_pred ----------CCeEEEEcce----eecccccCCCceEEEEEeCCC
Confidence 7889999999 999999999885 5656655
|
This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli. |
| >KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.30 E-value=2.6e-06 Score=78.29 Aligned_cols=121 Identities=12% Similarity=0.140 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcC------CCccEEEeecCCCHHHHHHHHHHHhcccccccc
Q 031433 8 QETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL------ADISFSSLHSDLAETERTLILEEFRHTAMKWNQ 81 (159)
Q Consensus 8 ~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~------~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~ 81 (159)
.+-+.+++..+.. ......+|||-.....+..+.+.|... ..+.+..+|+.|+..+.+.+...--.|
T Consensus 397 ~~Li~~li~~I~~-~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g------ 469 (924)
T KOG0920|consen 397 YDLIEDLIEYIDE-REFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKG------ 469 (924)
T ss_pred HHHHHHHHHhccc-CCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCC------
Confidence 3445567776665 566799999999999999999999753 125788999999999988776666555
Q ss_pred cccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEE--------ccCCCC----------hhHHHhhhhc
Q 031433 82 KVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLIN--------YELPTK----------KETYIRRMTT 143 (159)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~--------~d~P~~----------~~~yi~R~GR 143 (159)
..+|+++|++ ++-.|.+++|-+||. ||.-.+ ...-.||.||
T Consensus 470 -----------------~RKIIlaTNI----AETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GR 528 (924)
T KOG0920|consen 470 -----------------TRKIILATNI----AETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGR 528 (924)
T ss_pred -----------------cchhhhhhhh----HhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhccc
Confidence 7999999999 999999999999995 443333 3344699999
Q ss_pred ccC-CCCeEEEEEE
Q 031433 144 CLA-AGTSFSDIIL 156 (159)
Q Consensus 144 ~~~-~~g~~i~~v~ 156 (159)
+|| ..|.++.+.+
T Consensus 529 AGRv~~G~cy~L~~ 542 (924)
T KOG0920|consen 529 AGRVRPGICYHLYT 542 (924)
T ss_pred ccCccCCeeEEeec
Confidence 977 5698887764
|
|
| >KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.30 E-value=3.3e-06 Score=74.71 Aligned_cols=106 Identities=16% Similarity=0.244 Sum_probs=85.7
Q ss_pred CCCCCcEEEEeCchHHHHHHHHHHhcCCC-------ccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCC
Q 031433 22 RRPGLPMIVCCSSRDELDAVCSAVSNLAD-------ISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETG 94 (159)
Q Consensus 22 ~~~~~k~iIF~ns~~~~~~l~~~L~~~~~-------i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~ 94 (159)
.++..-+|||-...++++.+++.|.+... .-+..+||.|+.++..++++.--.|
T Consensus 255 ~E~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g------------------- 315 (674)
T KOG0922|consen 255 TEPPGDILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPG------------------- 315 (674)
T ss_pred cCCCCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCC-------------------
Confidence 35556899999999999999999988611 1357899999999988776655555
Q ss_pred CCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccC------------------CCChhHHHhhhhcccCCC-CeEEEE
Q 031433 95 KDEHKSHMIVVTDACLPLLSSGESAISARVLINYEL------------------PTKKETYIRRMTTCLAAG-TSFSDI 154 (159)
Q Consensus 95 ~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~------------------P~~~~~yi~R~GR~~~~~-g~~i~~ 154 (159)
..+|+++|++ ++-.+.++++.+||.-++ |-|..+=.||.||+||.+ |.++-+
T Consensus 316 ----~RKvIlsTNI----AETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~pGkcyRL 386 (674)
T KOG0922|consen 316 ----KRKVILSTNI----AETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTGPGKCYRL 386 (674)
T ss_pred ----cceEEEEcce----eeeeEEecceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCCCceEEEe
Confidence 7999999999 999999999999996442 446677889999998864 777654
|
|
| >KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.29 E-value=5.1e-06 Score=77.95 Aligned_cols=103 Identities=18% Similarity=0.244 Sum_probs=82.7
Q ss_pred HHHHccCCCCCcEEEEeCchHHHHHHHHHHhcC-------------------------------------CCccEEEeec
Q 031433 16 HLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL-------------------------------------ADISFSSLHS 58 (159)
Q Consensus 16 ~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~-------------------------------------~~i~~~~l~~ 58 (159)
+++++ .-...++|||+.+++.+...+++++.. + .-+...|.
T Consensus 538 eKVm~-~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLp-ygfaIHhA 615 (1674)
T KOG0951|consen 538 EKVLE-HAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLP-YGFAIHHA 615 (1674)
T ss_pred HHHHH-hCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhh-ccceeecc
Confidence 34444 333489999999999988888877722 1 24667789
Q ss_pred CCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEE----EccC----
Q 031433 59 DLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLI----NYEL---- 130 (159)
Q Consensus 59 ~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI----~~d~---- 130 (159)
+|+..+|...-+-|+.| .+++||+|-. ++.|++.|.=.++| -||+
T Consensus 616 Gl~R~dR~~~EdLf~~g-----------------------~iqvlvstat----lawgvnlpahtViikgtqvy~pekg~ 668 (1674)
T KOG0951|consen 616 GLNRKDRELVEDLFADG-----------------------HIQVLVSTAT----LAWGVNLPAHTVIIKGTQVYDPEKGR 668 (1674)
T ss_pred CCCcchHHHHHHHHhcC-----------------------ceeEEEeehh----hhhhcCCCcceEEecCccccCcccCc
Confidence 99999999999999999 9999999999 99999999766665 3553
Q ss_pred --CCChhHHHhhhhcccCC
Q 031433 131 --PTKKETYIRRMTTCLAA 147 (159)
Q Consensus 131 --P~~~~~yi~R~GR~~~~ 147 (159)
+-++.+-+|+.||+||.
T Consensus 669 w~elsp~dv~qmlgragrp 687 (1674)
T KOG0951|consen 669 WTELSPLDVMQMLGRAGRP 687 (1674)
T ss_pred cccCCHHHHHHHHhhcCCC
Confidence 45789999999999774
|
|
| >KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.6e-05 Score=71.73 Aligned_cols=102 Identities=17% Similarity=0.195 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccC
Q 031433 8 QETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQS 87 (159)
Q Consensus 8 ~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~ 87 (159)
-++|..||..+.. .+.+++||..--...+.|...|...+ +...-|.|.....+|+.++++|...+
T Consensus 763 ~r~L~~LLp~~k~---~G~RVLiFSQFTqmLDILE~~L~~l~-~~ylRLDGsTqV~~RQ~lId~Fn~d~----------- 827 (941)
T KOG0389|consen 763 CRKLKELLPKIKK---KGDRVLIFSQFTQMLDILEVVLDTLG-YKYLRLDGSTQVNDRQDLIDEFNTDK----------- 827 (941)
T ss_pred HhHHHHHHHHHhh---cCCEEEEeeHHHHHHHHHHHHHHhcC-ceEEeecCCccchHHHHHHHhhccCC-----------
Confidence 3556666665543 56999999999999999999999998 69999999999999999999999874
Q ss_pred CCCCCCCCCCCcee-EEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHh
Q 031433 88 GDESETGKDEHKSH-MIVVTDACLPLLSSGESAISARVLINYELPTKKETYIR 139 (159)
Q Consensus 88 ~~~~~~~~~~~~~~-vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~ 139 (159)
.+. .|++|-+ .+.||++..+++||.||+..+|-+=.|
T Consensus 828 -----------difVFLLSTKA----GG~GINLt~An~VIihD~dFNP~dD~Q 865 (941)
T KOG0389|consen 828 -----------DIFVFLLSTKA----GGFGINLTCANTVIIHDIDFNPYDDKQ 865 (941)
T ss_pred -----------ceEEEEEeecc----CcceecccccceEEEeecCCCCcccch
Confidence 444 5789999 999999999999999999877654444
|
|
| >COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.6e-05 Score=72.07 Aligned_cols=110 Identities=14% Similarity=0.126 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHcc--CCC-CCcEEEEeCchHHHHHHHHHHhcC----CCccEEEeecCCCHHHHHHHHHHHhccccccc
Q 031433 8 QETLVELLHLVVAG--RRP-GLPMIVCCSSRDELDAVCSAVSNL----ADISFSSLHSDLAETERTLILEEFRHTAMKWN 80 (159)
Q Consensus 8 ~~~l~~ll~~l~~~--~~~-~~k~iIF~ns~~~~~~l~~~L~~~----~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~ 80 (159)
.+.....+...+.. ... ..|+||||.+.++++.+...|.+. ++--+..++|+-.+. +..++.|... .
T Consensus 406 ~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~~~--q~~Id~f~~k-e--- 479 (875)
T COG4096 406 TETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAEQA--QALIDNFIDK-E--- 479 (875)
T ss_pred HHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccchhh--HHHHHHHHhc-C---
Confidence 34455555555553 222 479999999999999999999875 212567788865544 4557777662 1
Q ss_pred ccccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcc
Q 031433 81 QKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC 144 (159)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~ 144 (159)
.-++|-|+.|+ +.-|+|+|.|..++.+-.=.|...|.|.+||.
T Consensus 480 -----------------~~P~Iaitvdl----L~TGiDvpev~nlVF~r~VrSktkF~QMvGRG 522 (875)
T COG4096 480 -----------------KYPRIAITVDL----LTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRG 522 (875)
T ss_pred -----------------CCCceEEehhh----hhcCCCchheeeeeehhhhhhHHHHHHHhcCc
Confidence 25889999999 99999999999999999999999999999997
|
|
| >PRK13103 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=98.23 E-value=9.5e-06 Score=74.55 Aligned_cols=125 Identities=14% Similarity=0.147 Sum_probs=96.8
Q ss_pred eecCcHHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhccccccccc
Q 031433 3 VSFTFQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQK 82 (159)
Q Consensus 3 v~~~~~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~ 82 (159)
||.+..++...+++.+......+.++||-|.|.+..+.|++.|...+ +...+|+.....+| ..++. +.|.
T Consensus 427 vy~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls~~L~~~g-i~h~VLNAk~~~~E-A~IIa--~AG~------ 496 (913)
T PRK13103 427 VYLTAEEKYAAIITDIKECMALGRPVLVGTATIETSEHMSNLLKKEG-IEHKVLNAKYHEKE-AEIIA--QAGR------ 496 (913)
T ss_pred EEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHHcC-CcHHHhccccchhH-HHHHH--cCCC------
Confidence 56677788888888777656789999999999999999999999998 78888887644333 22333 2331
Q ss_pred ccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCC-------------------------------------CCeE
Q 031433 83 VTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAIS-------------------------------------ARVL 125 (159)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~-------------------------------------v~~V 125 (159)
.-.|-|||++ ++||.||.- -=+|
T Consensus 497 ----------------~GaVTIATNM----AGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhV 556 (913)
T PRK13103 497 ----------------PGALTIATNM----AGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQKRHQQVIEAGGLHV 556 (913)
T ss_pred ----------------CCcEEEeccC----CCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCCCEE
Confidence 5679999999 999999951 1278
Q ss_pred EEccCCCChhHHHhhhhcccCCC--CeEEEEEEe
Q 031433 126 INYELPTKKETYIRRMTTCLAAG--TSFSDIILL 157 (159)
Q Consensus 126 I~~d~P~~~~~yi~R~GR~~~~~--g~~i~~v~~ 157 (159)
|--..|.|..-=-|=.||+||+| |.+--|++|
T Consensus 557 IgTerheSrRID~QLrGRaGRQGDPGsS~f~lSl 590 (913)
T PRK13103 557 IASERHESRRIDNQLRGRAGRQGDPGSSRFYLSL 590 (913)
T ss_pred EeeccCchHHHHHHhccccccCCCCCceEEEEEc
Confidence 88899999888889999998775 666666654
|
|
| >KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.6e-05 Score=71.32 Aligned_cols=107 Identities=15% Similarity=0.164 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccC
Q 031433 8 QETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQS 87 (159)
Q Consensus 8 ~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~ 87 (159)
+..|-+||..+-. .+.++|+|..--+..+.+.++|...+ ....-|.|.....+|...+.+|+...
T Consensus 1030 L~~LDeLL~kLka---egHRvL~yfQMTkM~dl~EdYl~yr~-Y~ylRLDGSsk~~dRrd~vrDwQ~sd----------- 1094 (1185)
T KOG0388|consen 1030 LVVLDELLPKLKA---EGHRVLMYFQMTKMIDLIEDYLVYRG-YTYLRLDGSSKASDRRDVVRDWQASD----------- 1094 (1185)
T ss_pred eeeHHHHHHHhhc---CCceEEehhHHHHHHHHHHHHHHhhc-cceEEecCcchhhHHHHHHhhccCCc-----------
Confidence 3445566665543 46899999999999999999999998 49999999999999999999999962
Q ss_pred CCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcc
Q 031433 88 GDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC 144 (159)
Q Consensus 88 ~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~ 144 (159)
..-.|++|-+ .+-||++..++.||.||.-|+|..=.|-+-|+
T Consensus 1095 -----------iFvFLLSTRA----GGLGINLTAADTViFYdSDWNPT~D~QAMDRA 1136 (1185)
T KOG0388|consen 1095 -----------IFVFLLSTRA----GGLGINLTAADTVIFYDSDWNPTADQQAMDRA 1136 (1185)
T ss_pred -----------eEEEEEeccc----CcccccccccceEEEecCCCCcchhhHHHHHH
Confidence 4556789999 99999999999999999999987777766666
|
|
| >KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.7e-05 Score=68.62 Aligned_cols=106 Identities=16% Similarity=0.215 Sum_probs=85.1
Q ss_pred CCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCcee
Q 031433 22 RRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSH 101 (159)
Q Consensus 22 ~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (159)
..++.|.+|||.-....+.+...+.+++ +...-+.|..+..+|....++|+..+ +.+
T Consensus 489 d~~~~KflVFaHH~~vLd~Iq~~~~~r~-vg~IRIDGst~s~~R~ll~qsFQ~se----------------------ev~ 545 (689)
T KOG1000|consen 489 DAPPRKFLVFAHHQIVLDTIQVEVNKRK-VGSIRIDGSTPSHRRTLLCQSFQTSE----------------------EVR 545 (689)
T ss_pred cCCCceEEEEehhHHHHHHHHHHHHHcC-CCeEEecCCCCchhHHHHHHHhcccc----------------------ceE
Confidence 5667999999999999999999999997 89999999999999999999999862 333
Q ss_pred -EEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHh---hhhcccCCCCeEEEE
Q 031433 102 -MIVVTDACLPLLSSGESAISARVLINYELPTKKETYIR---RMTTCLAAGTSFSDI 154 (159)
Q Consensus 102 -vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~---R~GR~~~~~g~~i~~ 154 (159)
.+++-.+ ++.|+++...+.|+..++||||.-++| |+-|.|..+.+.+-+
T Consensus 546 VAvlsItA----~gvGLt~tAa~~VVFaEL~wnPgvLlQAEDRaHRiGQkssV~v~y 598 (689)
T KOG1000|consen 546 VAVLSITA----AGVGLTLTAASVVVFAELHWNPGVLLQAEDRAHRIGQKSSVFVQY 598 (689)
T ss_pred EEEEEEee----cccceeeeccceEEEEEecCCCceEEechhhhhhccccceeeEEE
Confidence 3445556 899999999999999999999876665 333334444444443
|
|
| >TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family | Back alignment and domain information |
|---|
Probab=98.13 E-value=4.2e-05 Score=68.97 Aligned_cols=95 Identities=15% Similarity=0.097 Sum_probs=72.4
Q ss_pred CCcEEEEeCchHHHHHHHHHHhcCC----CccEEEeecCCCHH---------------------HHHHHHHHHhcccccc
Q 031433 25 GLPMIVCCSSRDELDAVCSAVSNLA----DISFSSLHSDLAET---------------------ERTLILEEFRHTAMKW 79 (159)
Q Consensus 25 ~~k~iIF~ns~~~~~~l~~~L~~~~----~i~~~~l~~~~~~~---------------------~R~~~l~~F~~~~~~~ 79 (159)
+.|++|||.++..|..+.+.|.+.. .....++++..+.+ ....++++|+..
T Consensus 514 ~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~---- 589 (667)
T TIGR00348 514 KFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKE---- 589 (667)
T ss_pred cCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCC----
Confidence 5899999999999999999887651 12556666654433 123566666653
Q ss_pred cccccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccC
Q 031433 80 NQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLA 146 (159)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~ 146 (159)
+.+++||++|. +..|.|.|.++.++..-+-.+ -.++|-+||+.|
T Consensus 590 ------------------~~~~ilIVvdm----llTGFDaP~l~tLyldKplk~-h~LlQai~R~nR 633 (667)
T TIGR00348 590 ------------------ENPKLLIVVDM----LLTGFDAPILNTLYLDKPLKY-HGLLQAIARTNR 633 (667)
T ss_pred ------------------CCceEEEEEcc----cccccCCCccceEEEeccccc-cHHHHHHHHhcc
Confidence 27899999999 999999999999987665554 468999999966
|
Members of this family are assumed to differ from each other in DNA site specificity. |
| >KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.10 E-value=7.6e-06 Score=73.62 Aligned_cols=117 Identities=20% Similarity=0.244 Sum_probs=81.8
Q ss_pred HHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCC--------------------------------------cc
Q 031433 11 LVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLAD--------------------------------------IS 52 (159)
Q Consensus 11 l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~--------------------------------------i~ 52 (159)
+..+.+-+. .+...++|||+=+++.|+..+-.+.+... --
T Consensus 371 i~kiVkmi~--~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~LseeDr~LPqie~iLPLL~RG 448 (1041)
T KOG0948|consen 371 IYKIVKMIM--ERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQLSEEDRELPQIENILPLLRRG 448 (1041)
T ss_pred HHHHHHHHH--hhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhcChhhccchHHHHHHHHHHhc
Confidence 344555444 45678999999999999999988876510 01
Q ss_pred EEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEE----c
Q 031433 53 FSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLIN----Y 128 (159)
Q Consensus 53 ~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~----~ 128 (159)
+...|+++-+--+.-+-==|+.| -+++|.||+. ++.|++.|.-.+|+- |
T Consensus 449 IGIHHsGLLPIlKE~IEILFqEG-----------------------LvKvLFATET----FsiGLNMPAkTVvFT~~rKf 501 (1041)
T KOG0948|consen 449 IGIHHSGLLPILKEVIEILFQEG-----------------------LVKVLFATET----FSIGLNMPAKTVVFTAVRKF 501 (1041)
T ss_pred cccccccchHHHHHHHHHHHhcc-----------------------HHHHHHhhhh----hhhccCCcceeEEEeecccc
Confidence 33445665554444443446666 8999999999 999999997666552 2
Q ss_pred c---CCC-ChhHHHhhhhcccCCC----CeEEEEEE
Q 031433 129 E---LPT-KKETYIRRMTTCLAAG----TSFSDIIL 156 (159)
Q Consensus 129 d---~P~-~~~~yi~R~GR~~~~~----g~~i~~v~ 156 (159)
| +-| +.-.|+|..||+||++ |.+|.++.
T Consensus 502 DG~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiD 537 (1041)
T KOG0948|consen 502 DGKKFRWISSGEYIQMSGRAGRRGIDDRGIVILMID 537 (1041)
T ss_pred CCcceeeecccceEEecccccccCCCCCceEEEEec
Confidence 2 111 4568999999998876 88887764
|
|
| >KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.04 E-value=4.2e-05 Score=66.44 Aligned_cols=112 Identities=18% Similarity=0.144 Sum_probs=91.6
Q ss_pred cCcHHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhccccccccccc
Q 031433 5 FTFQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVT 84 (159)
Q Consensus 5 ~~~~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~ 84 (159)
+++-|.|.+-|..+.+ ...--|.|||..--...+.+...|.+.| +.++-|-|+|++..|..+++.|.+..
T Consensus 619 STKIEAL~EEl~~l~~-rd~t~KsIVFSQFTSmLDLi~~rL~kaG-fscVkL~GsMs~~ardatik~F~nd~-------- 688 (791)
T KOG1002|consen 619 STKIEALVEELYFLRE-RDRTAKSIVFSQFTSMLDLIEWRLGKAG-FSCVKLVGSMSPAARDATIKYFKNDI-------- 688 (791)
T ss_pred hhHHHHHHHHHHHHHH-cccchhhhhHHHHHHHHHHHHHHhhccC-ceEEEeccCCChHHHHHHHHHhccCC--------
Confidence 4566778877776665 5556789999999999999999999998 69999999999999999999999973
Q ss_pred ccCCCCCCCCCCCCceeEEEEe-cCCCCCCcCCCCCCCCCeEEEccCCCChh------HHHhhhhcc
Q 031433 85 EQSGDESETGKDEHKSHMIVVT-DACLPLLSSGESAISARVLINYELPTKKE------TYIRRMTTC 144 (159)
Q Consensus 85 ~~~~~~~~~~~~~~~~~vLV~T-d~~~~~~~rGid~~~v~~VI~~d~P~~~~------~yi~R~GR~ 144 (159)
.++|++.+ .+ .+-.+++..+++|++.|+=|++. +-+||||..
T Consensus 689 --------------~c~vfLvSLkA----GGVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~ 737 (791)
T KOG1002|consen 689 --------------DCRVFLVSLKA----GGVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQY 737 (791)
T ss_pred --------------CeEEEEEEecc----CceEeeechhceeEeecccccHHHHhhhhhhHHhhcCc
Confidence 77776554 44 55668999999999999888765 556777743
|
|
| >PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A | Back alignment and domain information |
|---|
Probab=98.02 E-value=4e-05 Score=57.49 Aligned_cols=79 Identities=19% Similarity=0.266 Sum_probs=57.1
Q ss_pred CCcEEEEeCchHHHHHHHHHHhcCCC-ccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEE
Q 031433 25 GLPMIVCCSSRDELDAVCSAVSNLAD-ISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMI 103 (159)
Q Consensus 25 ~~k~iIF~ns~~~~~~l~~~L~~~~~-i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL 103 (159)
+..++||++|.+..+.+.+.+..... -....+.. +..++...+++|+.+ .-.||
T Consensus 9 ~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~-----------------------~~~il 63 (167)
T PF13307_consen 9 PGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRG-----------------------EGAIL 63 (167)
T ss_dssp SSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCS-----------------------SSEEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhc-----------------------cCeEE
Confidence 48999999999999999999987630 01122222 356788999999998 78899
Q ss_pred EEec--CCCCCCcCCCCCCC--CCeEEEccCCC
Q 031433 104 VVTD--ACLPLLSSGESAIS--ARVLINYELPT 132 (159)
Q Consensus 104 V~Td--~~~~~~~rGid~~~--v~~VI~~d~P~ 132 (159)
+++. - +.+|+|+++ ++.||...+|.
T Consensus 64 ~~v~~g~----~~EGiD~~~~~~r~vii~glPf 92 (167)
T PF13307_consen 64 LAVAGGS----FSEGIDFPGDLLRAVIIVGLPF 92 (167)
T ss_dssp EEETTSC----CGSSS--ECESEEEEEEES---
T ss_pred EEEeccc----EEEeecCCCchhheeeecCCCC
Confidence 9997 7 899999986 66799999884
|
|
| >CHL00122 secA preprotein translocase subunit SecA; Validated | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00026 Score=65.10 Aligned_cols=88 Identities=10% Similarity=0.188 Sum_probs=67.7
Q ss_pred eecCcHHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCC-C-HHHHHHHHHHHhccccccc
Q 031433 3 VSFTFQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDL-A-ETERTLILEEFRHTAMKWN 80 (159)
Q Consensus 3 v~~~~~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~-~-~~~R~~~l~~F~~~~~~~~ 80 (159)
|+.+..++...+++.+......+.|+||-|.|.+..+.+++.|...+ +...+|+..- . .+| ..++.+ .|.
T Consensus 402 v~~t~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~g-i~h~vLNAk~~~~~~E-A~IIA~--AG~---- 473 (870)
T CHL00122 402 IYKDELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYR-LPHQLLNAKPENVRRE-SEIVAQ--AGR---- 473 (870)
T ss_pred EEeCHHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcC-CccceeeCCCccchhH-HHHHHh--cCC----
Confidence 45556667777777766656789999999999999999999999998 8999999863 2 222 334443 331
Q ss_pred ccccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCC
Q 031433 81 QKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAI 120 (159)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~ 120 (159)
.-.|-|||++ ++||.|+.
T Consensus 474 ------------------~G~VTIATNM----AGRGTDI~ 491 (870)
T CHL00122 474 ------------------KGSITIATNM----AGRGTDII 491 (870)
T ss_pred ------------------CCcEEEeccc----cCCCcCee
Confidence 5779999999 99999984
|
|
| >COG1110 Reverse gyrase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00011 Score=68.12 Aligned_cols=91 Identities=19% Similarity=0.306 Sum_probs=74.5
Q ss_pred cHHHHHHHHHHHHccCCCCCcEEEEeCc---hHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccc
Q 031433 7 FQETLVELLHLVVAGRRPGLPMIVCCSS---RDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKV 83 (159)
Q Consensus 7 ~~~~l~~ll~~l~~~~~~~~k~iIF~ns---~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~ 83 (159)
..++..++++.+ ++-.|||++. ++.+++++++|++.| +++..+|+. ..+.++.|..|
T Consensus 323 ~~e~~~elvk~l------G~GgLIfV~~d~G~e~aeel~e~Lr~~G-i~a~~~~a~-----~~~~le~F~~G-------- 382 (1187)
T COG1110 323 SLEKVVELVKKL------GDGGLIFVPIDYGREKAEELAEYLRSHG-INAELIHAE-----KEEALEDFEEG-------- 382 (1187)
T ss_pred cHHHHHHHHHHh------CCCeEEEEEcHHhHHHHHHHHHHHHhcC-ceEEEeecc-----chhhhhhhccC--------
Confidence 345666666644 3567999999 999999999999998 799999983 26779999999
Q ss_pred cccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCC-CCeEEEccCCC
Q 031433 84 TEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAIS-ARVLINYELPT 132 (159)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~-v~~VI~~d~P~ 132 (159)
++++||....-+--+.||||.|. ++++|.|+.|.
T Consensus 383 ---------------eidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvPk 417 (1187)
T COG1110 383 ---------------EVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVPK 417 (1187)
T ss_pred ---------------ceeEEEEecccccceeecCCchhheeEEEEecCCc
Confidence 89999986554445899999975 67899999994
|
|
| >KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00038 Score=60.74 Aligned_cols=102 Identities=19% Similarity=0.195 Sum_probs=76.3
Q ss_pred HHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCC
Q 031433 11 LVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDE 90 (159)
Q Consensus 11 l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~ 90 (159)
.++.|-..- +..+.|+|||..+.-...+.+-.| + --.++|..++.+|.++|+.|+..+
T Consensus 531 aCqfLI~~H--E~RgDKiIVFsDnvfALk~YAikl---~---KpfIYG~Tsq~ERm~ILqnFq~n~-------------- 588 (776)
T KOG1123|consen 531 ACQFLIKFH--ERRGDKIIVFSDNVFALKEYAIKL---G---KPFIYGPTSQNERMKILQNFQTNP-------------- 588 (776)
T ss_pred HHHHHHHHH--HhcCCeEEEEeccHHHHHHHHHHc---C---CceEECCCchhHHHHHHHhcccCC--------------
Confidence 344444333 346799999987755544444333 3 246899999999999999999873
Q ss_pred CCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCC-CChhHHHhhhhcccC
Q 031433 91 SETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELP-TKKETYIRRMTTCLA 146 (159)
Q Consensus 91 ~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P-~~~~~yi~R~GR~~~ 146 (159)
.++-+..+-+ ..-.+|+|+++++|+...- .+...=.||.||..|
T Consensus 589 --------~vNTIFlSKV----gDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILR 633 (776)
T KOG1123|consen 589 --------KVNTIFLSKV----GDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILR 633 (776)
T ss_pred --------ccceEEEeec----cCccccCCcccEEEEEcccccchHHHHHHHHHHHH
Confidence 7887888888 8899999999999987754 456677899999844
|
|
| >KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00012 Score=67.70 Aligned_cols=108 Identities=15% Similarity=0.138 Sum_probs=87.7
Q ss_pred CCCCCcEEEEeCchHHHHHHHHHHhcC---------------------CCccEEEeecCCCHHHHHHHHHHHhccccccc
Q 031433 22 RRPGLPMIVCCSSRDELDAVCSAVSNL---------------------ADISFSSLHSDLAETERTLILEEFRHTAMKWN 80 (159)
Q Consensus 22 ~~~~~k~iIF~ns~~~~~~l~~~L~~~---------------------~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~ 80 (159)
+.-+.|+|||..+..+.+.+-.+|..- .+....-|.|.....+|.+..++|.....
T Consensus 1139 eeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~~~FNdp~N--- 1215 (1567)
T KOG1015|consen 1139 EEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWAEEFNDPTN--- 1215 (1567)
T ss_pred HHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHHHHHhcCccc---
Confidence 456899999999999999998888742 12467788899999999999999988621
Q ss_pred ccccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcc--cCCCCeEE
Q 031433 81 QKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LAAGTSFS 152 (159)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~--~~~~g~~i 152 (159)
-...-.||+|-+ .+-||++-.++-||.||..|+|..=.|-|=|+ .++...++
T Consensus 1216 ----------------lRaRl~LISTRA----GsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvy 1269 (1567)
T KOG1015|consen 1216 ----------------LRARLFLISTRA----GSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVY 1269 (1567)
T ss_pred ----------------ceeEEEEEeecc----CccccceeecceEEEEecccCCccchHHHHHHHhhcCcCcee
Confidence 112347899999 99999999999999999999999999988888 44444443
|
|
| >KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00021 Score=66.47 Aligned_cols=103 Identities=16% Similarity=0.197 Sum_probs=78.0
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcC----CC------------------ccEEEeecCCCHHHHHHHHHHHhcccccccc
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSNL----AD------------------ISFSSLHSDLAETERTLILEEFRHTAMKWNQ 81 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~~----~~------------------i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~ 81 (159)
.+.+++|||.++..+...++.|.+. |. --....|.+|..++|.-.-+.|..|
T Consensus 348 ~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G------ 421 (1230)
T KOG0952|consen 348 EGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEG------ 421 (1230)
T ss_pred cCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcC------
Confidence 3799999999999999888888864 10 1234567899999999999999999
Q ss_pred cccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEE-----ccCCC------ChhHHHhhhhcccC----
Q 031433 82 KVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLIN-----YELPT------KKETYIRRMTTCLA---- 146 (159)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~-----~d~P~------~~~~yi~R~GR~~~---- 146 (159)
.++||+||.. ++=|+++|. .+||- ||.-. ..-+-+|-.||+||
T Consensus 422 -----------------~i~vL~cTaT----LAwGVNLPA-~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd 479 (1230)
T KOG0952|consen 422 -----------------HIKVLCCTAT----LAWGVNLPA-YAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFD 479 (1230)
T ss_pred -----------------CceEEEecce----eeeccCCcc-eEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCC
Confidence 8999999999 999999996 45553 33332 23456777777755
Q ss_pred CCCeEEEE
Q 031433 147 AGTSFSDI 154 (159)
Q Consensus 147 ~~g~~i~~ 154 (159)
..|.++-+
T Consensus 480 ~~G~giIi 487 (1230)
T KOG0952|consen 480 SSGEGIII 487 (1230)
T ss_pred CCceEEEE
Confidence 45666654
|
|
| >KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.73 E-value=8e-05 Score=66.48 Aligned_cols=108 Identities=11% Similarity=0.146 Sum_probs=83.2
Q ss_pred CCCCCcEEEEeCchHHHHHHHHHHhcC--------CCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCC
Q 031433 22 RRPGLPMIVCCSSRDELDAVCSAVSNL--------ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESET 93 (159)
Q Consensus 22 ~~~~~k~iIF~ns~~~~~~l~~~L~~~--------~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~ 93 (159)
..+..-+|||---.+..+...+.|... ..+-+..+|+.++.+.+.++++.--.|
T Consensus 470 tqp~GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~g------------------ 531 (902)
T KOG0923|consen 470 TQPLGDILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPG------------------ 531 (902)
T ss_pred ccCCccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCC------------------
Confidence 445578999988877777666555543 236788999999999988887655444
Q ss_pred CCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCC------------------CChhHHHhhhhcccCCC-CeEEEE
Q 031433 94 GKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELP------------------TKKETYIRRMTTCLAAG-TSFSDI 154 (159)
Q Consensus 94 ~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P------------------~~~~~yi~R~GR~~~~~-g~~i~~ 154 (159)
..+|++||++ ++-.|.+++|.+||.=++. =+..+-.||+||+||-+ |.|+-+
T Consensus 532 -----aRKVVLATNI----AETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtgPGKCfRL 602 (902)
T KOG0923|consen 532 -----ARKVVLATNI----AETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTGPGKCFRL 602 (902)
T ss_pred -----ceeEEEeecc----hhhceeecCeEEEecCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCCCCceEEe
Confidence 6899999999 9999999999999965432 24556689999998865 888776
Q ss_pred EE
Q 031433 155 IL 156 (159)
Q Consensus 155 v~ 156 (159)
-+
T Consensus 603 Yt 604 (902)
T KOG0923|consen 603 YT 604 (902)
T ss_pred ec
Confidence 54
|
|
| >KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.72 E-value=8.8e-05 Score=66.49 Aligned_cols=119 Identities=13% Similarity=0.225 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHcc--CCCCCcEEEEeCchHHHHHHHH----HHhcC---C--CccEEEeecCCCHHHHHHHHHHHhcccc
Q 031433 9 ETLVELLHLVVAG--RRPGLPMIVCCSSRDELDAVCS----AVSNL---A--DISFSSLHSDLAETERTLILEEFRHTAM 77 (159)
Q Consensus 9 ~~l~~ll~~l~~~--~~~~~k~iIF~ns~~~~~~l~~----~L~~~---~--~i~~~~l~~~~~~~~R~~~l~~F~~~~~ 77 (159)
+.....+.+.+.. .....-+|||..-.+.++..+. .|.+. + .+.+..+++.|+.+-+.++++.--.+
T Consensus 545 DYVeaavkq~v~Ihl~~~~GdilIfmtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~-- 622 (1042)
T KOG0924|consen 545 DYVEAAVKQAVQIHLSGPPGDILIFMTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGG-- 622 (1042)
T ss_pred HHHHHHHhhheEeeccCCCCCEEEecCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCC--
Confidence 4444444443322 2334678999887766555444 44432 2 47899999999999888776655555
Q ss_pred cccccccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccC------------------CCChhHHHh
Q 031433 78 KWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYEL------------------PTKKETYIR 139 (159)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~------------------P~~~~~yi~ 139 (159)
..+++|+|++ ++-.+.++++.+||..+. |-+...--|
T Consensus 623 ---------------------vRK~IvATNI----AETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~Q 677 (1042)
T KOG0924|consen 623 ---------------------VRKCIVATNI----AETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQ 677 (1042)
T ss_pred ---------------------ceeEEEeccc----hhhceeecceEEEEecCceeeeecccccccceeEEEechhccchh
Confidence 8999999999 999999999999997664 334555679
Q ss_pred hhhcccCCC-CeEEEE
Q 031433 140 RMTTCLAAG-TSFSDI 154 (159)
Q Consensus 140 R~GR~~~~~-g~~i~~ 154 (159)
|.||+||.+ |.|+-+
T Consensus 678 RaGRAGRt~pG~cYRl 693 (1042)
T KOG0924|consen 678 RAGRAGRTGPGTCYRL 693 (1042)
T ss_pred hccccCCCCCcceeee
Confidence 999998864 777654
|
|
| >COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00078 Score=60.34 Aligned_cols=92 Identities=17% Similarity=0.215 Sum_probs=66.0
Q ss_pred HHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCC
Q 031433 10 TLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGD 89 (159)
Q Consensus 10 ~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~ 89 (159)
.+...+..+.. .. +.+++||+.|.+..+.+.+.|...........+|+ ..+...+++|+...
T Consensus 466 ~~~~~i~~~~~-~~-~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~---~~~~~~l~~f~~~~------------- 527 (654)
T COG1199 466 KLAAYLREILK-AS-PGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGE---DEREELLEKFKASG------------- 527 (654)
T ss_pred HHHHHHHHHHh-hc-CCCEEEEeccHHHHHHHHHHHhhcCccceeeecCC---CcHHHHHHHHHHhc-------------
Confidence 34444444544 33 34999999999999999999988752123444443 44458999999961
Q ss_pred CCCCCCCCCceeEEEEecCCCCCCcCCCCCCCC--CeEEEccCCC
Q 031433 90 ESETGKDEHKSHMIVVTDACLPLLSSGESAISA--RVLINYELPT 132 (159)
Q Consensus 90 ~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v--~~VI~~d~P~ 132 (159)
..-++|+|.- +++|+|+++= +.||...+|.
T Consensus 528 ---------~~~~lv~~gs----f~EGVD~~g~~l~~vvI~~lPf 559 (654)
T COG1199 528 ---------EGLILVGGGS----FWEGVDFPGDALRLVVIVGLPF 559 (654)
T ss_pred ---------CCeEEEeecc----ccCcccCCCCCeeEEEEEecCC
Confidence 2279999999 9999999876 5688888774
|
|
| >COG4889 Predicted helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.61 E-value=3.4e-05 Score=70.77 Aligned_cols=99 Identities=11% Similarity=0.154 Sum_probs=70.3
Q ss_pred CCcEEEEeCchHHHHHHHHHHhc-----------C-CCccEEEe--ecCCCHHHHHHHHHHHhcccccccccccccCCCC
Q 031433 25 GLPMIVCCSSRDELDAVCSAVSN-----------L-ADISFSSL--HSDLAETERTLILEEFRHTAMKWNQKVTEQSGDE 90 (159)
Q Consensus 25 ~~k~iIF~ns~~~~~~l~~~L~~-----------~-~~i~~~~l--~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~ 90 (159)
-+++|-||.+.++...+++.+.. . ..+++..= .|.|.-.+|.+.+. ..+.
T Consensus 460 ~~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~-l~~~--------------- 523 (1518)
T COG4889 460 MQRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLE-LKNT--------------- 523 (1518)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHh-ccCC---------------
Confidence 36788899988887666554332 2 12444444 48899988843332 2211
Q ss_pred CCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCC
Q 031433 91 SETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAA 147 (159)
Q Consensus 91 ~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~ 147 (159)
.....++||----+ +++|+|+|..+-||.||+-.+..+.+|-+||++|.
T Consensus 524 ----~~~neckIlSNaRc----LSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRK 572 (1518)
T COG4889 524 ----FEPNECKILSNARC----LSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRK 572 (1518)
T ss_pred ----CCcchheeeccchh----hhcCCCccccceEEEecCchhHHHHHHHHHHHHHh
Confidence 11126777766666 99999999999999999999999999999999664
|
|
| >KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00033 Score=64.85 Aligned_cols=108 Identities=15% Similarity=0.141 Sum_probs=89.9
Q ss_pred HHHHHHHHc-cCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCC
Q 031433 12 VELLHLVVA-GRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDE 90 (159)
Q Consensus 12 ~~ll~~l~~-~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~ 90 (159)
.+||+.++- ....+.+++.||.-..-.+.+..+|.-.+ +...-+.|....++|-..++.|..+.++
T Consensus 712 fELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~-~kYlRLDG~TK~~eRg~ll~~FN~Pds~------------ 778 (1157)
T KOG0386|consen 712 FELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIRE-YKYLRLDGQTKVEERGDLLEIFNAPDSP------------ 778 (1157)
T ss_pred HHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhh-hheeeecCCcchhhHHHHHHHhcCCCCc------------
Confidence 345554442 23467999999999999999999999887 5999999999999999999999997433
Q ss_pred CCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcc
Q 031433 91 SETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC 144 (159)
Q Consensus 91 ~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~ 144 (159)
-...|.+|.+ .+.|++.+-++.||-||.-|++-...|+--|+
T Consensus 779 --------yf~Fllstra----gglglNlQtadtviifdsdwnp~~d~qaqdra 820 (1157)
T KOG0386|consen 779 --------YFIFLLSTRA----GGLGLNLQTADTVIIFDSDWNPHQDLQAQDRA 820 (1157)
T ss_pred --------eeeeeeeecc----cccccchhhcceEEEecCCCCchhHHHHHHHH
Confidence 3667899999 99999999999999999999987776655554
|
|
| >TIGR00596 rad1 DNA repair protein (rad1) | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00028 Score=64.90 Aligned_cols=43 Identities=12% Similarity=0.108 Sum_probs=34.1
Q ss_pred cCcHHHHHHHHHHHHccC------CCCCcEEEEeCchHHHHHHHHHHhc
Q 031433 5 FTFQETLVELLHLVVAGR------RPGLPMIVCCSSRDELDAVCSAVSN 47 (159)
Q Consensus 5 ~~~~~~l~~ll~~l~~~~------~~~~k~iIF~ns~~~~~~l~~~L~~ 47 (159)
.++-+.|.++|+.+..+. ....++||||+..++|..|.++|..
T Consensus 269 ~PKw~~L~eiL~eI~~~~~~~~~~~~~~~iLI~~~d~~T~~qL~~~L~~ 317 (814)
T TIGR00596 269 NPKWEVLTDVLKEISHEMRMTNRLQGPGKVLIMCSDNRTCLQLRDYLTT 317 (814)
T ss_pred CCCHHHHHHHHHHHHhHHhhhcccCCCCcEEEEEcchHHHHHHHHHHHh
Confidence 356677888888776531 4457899999999999999999965
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit |
| >KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00013 Score=67.43 Aligned_cols=69 Identities=19% Similarity=0.211 Sum_probs=61.4
Q ss_pred EEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccC-C
Q 031433 53 FSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYEL-P 131 (159)
Q Consensus 53 ~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~-P 131 (159)
+.+.|++|+...|..+--=||.| ...||++|.. ++-||+.|.-.+|+--|. -
T Consensus 965 iG~HHaglNr~yR~~VEvLFR~g-----------------------~L~VlfaT~T----LsLGiNMPCrTVvF~gDsLQ 1017 (1330)
T KOG0949|consen 965 IGVHHAGLNRKYRSLVEVLFRQG-----------------------HLQVLFATET----LSLGINMPCRTVVFAGDSLQ 1017 (1330)
T ss_pred ccccccccchHHHHHHHHHhhcC-----------------------ceEEEEEeee----hhcccCCCceeEEEeccccc
Confidence 45678999999999998899999 9999999999 999999998777777664 4
Q ss_pred CChhHHHhhhhcccCCC
Q 031433 132 TKKETYIRRMTTCLAAG 148 (159)
Q Consensus 132 ~~~~~yi~R~GR~~~~~ 148 (159)
-++-.|-|.+||+||++
T Consensus 1018 L~plny~QmaGRAGRRG 1034 (1330)
T KOG0949|consen 1018 LDPLNYKQMAGRAGRRG 1034 (1330)
T ss_pred cCchhHHhhhccccccc
Confidence 58999999999999986
|
|
| >PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0015 Score=61.07 Aligned_cols=94 Identities=14% Similarity=0.221 Sum_probs=67.2
Q ss_pred HHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCc-cEEEeecCCCHHHHHHHHHHHhcccccccccccccCC
Q 031433 10 TLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADI-SFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSG 88 (159)
Q Consensus 10 ~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i-~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~ 88 (159)
.+.+.+..+.. ..+.+++||++|.+..+.+++.|...... ....+.-+++...|.+++++|+++
T Consensus 739 ~la~~i~~l~~--~~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~------------- 803 (928)
T PRK08074 739 EVAAYIAKIAK--ATKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQF------------- 803 (928)
T ss_pred HHHHHHHHHHH--hCCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhc-------------
Confidence 34444444443 23468999999999999999999865210 122333344445678899999987
Q ss_pred CCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCC--CeEEEccCCC
Q 031433 89 DESETGKDEHKSHMIVVTDACLPLLSSGESAISA--RVLINYELPT 132 (159)
Q Consensus 89 ~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v--~~VI~~d~P~ 132 (159)
+-.||++|.. +.+|+|+|+- ++||...+|.
T Consensus 804 ----------~~~iLlG~~s----FwEGVD~pg~~l~~viI~kLPF 835 (928)
T PRK08074 804 ----------DKAILLGTSS----FWEGIDIPGDELSCLVIVRLPF 835 (928)
T ss_pred ----------CCeEEEecCc----ccCccccCCCceEEEEEecCCC
Confidence 6779999999 9999999876 6687777664
|
|
| >COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00039 Score=65.06 Aligned_cols=105 Identities=18% Similarity=0.237 Sum_probs=80.1
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhcCC---------------------------Ccc-------------EEEeecCCCH
Q 031433 23 RPGLPMIVCCSSRDELDAVCSAVSNLA---------------------------DIS-------------FSSLHSDLAE 62 (159)
Q Consensus 23 ~~~~k~iIF~ns~~~~~~l~~~L~~~~---------------------------~i~-------------~~~l~~~~~~ 62 (159)
....++|+||-+++.|+..+..+.... .+. ..+.|++|=+
T Consensus 377 ~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP 456 (1041)
T COG4581 377 DNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLP 456 (1041)
T ss_pred hcCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccch
Confidence 445899999999999999888887320 011 2356788888
Q ss_pred HHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEE----Ecc----CCCCh
Q 031433 63 TERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLI----NYE----LPTKK 134 (159)
Q Consensus 63 ~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI----~~d----~P~~~ 134 (159)
..|..+-.-|..| -++|+++|+. ++.|++.|.=++|+ .|| -+-++
T Consensus 457 ~~K~~vE~Lfq~G-----------------------LvkvvFaTeT----~s~GiNmPartvv~~~l~K~dG~~~r~L~~ 509 (1041)
T COG4581 457 AIKELVEELFQEG-----------------------LVKVVFATET----FAIGINMPARTVVFTSLSKFDGNGHRWLSP 509 (1041)
T ss_pred HHHHHHHHHHhcc-----------------------ceeEEeehhh----hhhhcCCcccceeeeeeEEecCCceeecCh
Confidence 8888888888888 8999999999 99999999655543 222 24478
Q ss_pred hHHHhhhhcccCCC----CeEEEE
Q 031433 135 ETYIRRMTTCLAAG----TSFSDI 154 (159)
Q Consensus 135 ~~yi~R~GR~~~~~----g~~i~~ 154 (159)
..|.|..||+||++ |.+|.+
T Consensus 510 gEy~QmsGRAGRRGlD~~G~vI~~ 533 (1041)
T COG4581 510 GEYTQMSGRAGRRGLDVLGTVIVI 533 (1041)
T ss_pred hHHHHhhhhhccccccccceEEEe
Confidence 99999999998886 666554
|
|
| >PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0037 Score=56.86 Aligned_cols=94 Identities=16% Similarity=0.222 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCC
Q 031433 9 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSG 88 (159)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~ 88 (159)
+.+.+.+..+.. ....++||++|.+..+.+++.|..... .....+|. ..|.+++++|++.
T Consensus 521 ~~~~~~i~~l~~---~~gg~LVlFtSy~~l~~v~~~l~~~~~-~~ll~Q~~---~~~~~ll~~f~~~------------- 580 (697)
T PRK11747 521 AEMAEFLPELLE---KHKGSLVLFASRRQMQKVADLLPRDLR-LMLLVQGD---QPRQRLLEKHKKR------------- 580 (697)
T ss_pred HHHHHHHHHHHh---cCCCEEEEeCcHHHHHHHHHHHHHhcC-CcEEEeCC---chHHHHHHHHHHH-------------
Confidence 344444544543 345689999999999999999975422 33455664 3567888888752
Q ss_pred CCCCCCCCCCceeEEEEecCCCCCCcCCCCCCC--CCeEEEccCCC
Q 031433 89 DESETGKDEHKSHMIVVTDACLPLLSSGESAIS--ARVLINYELPT 132 (159)
Q Consensus 89 ~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~--v~~VI~~d~P~ 132 (159)
...++..||++|.. +.+|+|+|+ +++||...+|.
T Consensus 581 ------~~~~~~~VL~g~~s----f~EGVD~pGd~l~~vII~kLPF 616 (697)
T PRK11747 581 ------VDEGEGSVLFGLQS----FAEGLDLPGDYLTQVIITKIPF 616 (697)
T ss_pred ------hccCCCeEEEEecc----ccccccCCCCceEEEEEEcCCC
Confidence 00015679999999 999999987 67888877763
|
|
| >PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0047 Score=53.27 Aligned_cols=97 Identities=12% Similarity=0.116 Sum_probs=82.0
Q ss_pred CCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCcee
Q 031433 22 RRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSH 101 (159)
Q Consensus 22 ~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (159)
......+|||++|-=.--.|-++|++.+ +....+|.-.+..+-.++-..|.+| +.+
T Consensus 297 ~~~~~~~LIfIPSYfDfVRlRN~lk~~~-~sF~~i~EYts~~~isRAR~~F~~G-----------------------~~~ 352 (442)
T PF06862_consen 297 DSKMSGTLIFIPSYFDFVRLRNYLKKEN-ISFVQISEYTSNSDISRARSQFFHG-----------------------RKP 352 (442)
T ss_pred ccCCCcEEEEecchhhhHHHHHHHHhcC-CeEEEecccCCHHHHHHHHHHHHcC-----------------------Cce
Confidence 3456899999999998889999999887 7999999999999999999999999 899
Q ss_pred EEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcc
Q 031433 102 MIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC 144 (159)
Q Consensus 102 vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~ 144 (159)
+|+.|+- -..=|=..+.++++||.|.+|..+.-|-.-+.-.
T Consensus 353 iLL~TER--~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~ 393 (442)
T PF06862_consen 353 ILLYTER--FHFFRRYRIRGIRHVIFYGPPENPQFYSELLNML 393 (442)
T ss_pred EEEEEhH--HhhhhhceecCCcEEEEECCCCChhHHHHHHhhh
Confidence 9999985 0123445678899999999999999887766544
|
; GO: 0005634 nucleus |
| >PRK12902 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0012 Score=61.03 Aligned_cols=90 Identities=14% Similarity=0.163 Sum_probs=68.8
Q ss_pred eecCcHHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecC-CCHHHHHHHHHHHhcccccccc
Q 031433 3 VSFTFQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSD-LAETERTLILEEFRHTAMKWNQ 81 (159)
Q Consensus 3 v~~~~~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~-~~~~~R~~~l~~F~~~~~~~~~ 81 (159)
++.+..++...+++.+......+.|+||-|.|.+..+.+++.|...| +...+|+.. ...+.=..++.+ .|.
T Consensus 417 vy~t~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L~~~g-i~h~vLNAk~~~~~~EA~IIa~--AG~----- 488 (939)
T PRK12902 417 VYKTEIAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLQEQG-IPHNLLNAKPENVEREAEIVAQ--AGR----- 488 (939)
T ss_pred EEcCHHHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHHHHcC-CchheeeCCCcchHhHHHHHHh--cCC-----
Confidence 45566777777777777656789999999999999999999999998 899999986 222222334443 331
Q ss_pred cccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCC
Q 031433 82 KVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAIS 121 (159)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~ 121 (159)
.-.|-|||++ ++||.|+.-
T Consensus 489 -----------------~GaVTIATNM----AGRGTDIkL 507 (939)
T PRK12902 489 -----------------KGAVTIATNM----AGRGTDIIL 507 (939)
T ss_pred -----------------CCcEEEeccC----CCCCcCEee
Confidence 5679999999 999999853
|
|
| >PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.006 Score=56.49 Aligned_cols=77 Identities=16% Similarity=0.211 Sum_probs=58.3
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEE
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMI 103 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL 103 (159)
.+.+++|+++|.+..+.+++.|.... ... ...|.-. .|.+++++|+++ +..||
T Consensus 646 ~~g~~LVLFtS~~~l~~v~~~l~~~~-~~~-l~Qg~~~--~~~~l~~~F~~~-----------------------~~~vL 698 (820)
T PRK07246 646 LQQPILVLFNSKKHLLAVSDLLDQWQ-VSH-LAQEKNG--TAYNIKKRFDRG-----------------------EQQIL 698 (820)
T ss_pred cCCCEEEEECcHHHHHHHHHHHhhcC-CcE-EEeCCCc--cHHHHHHHHHcC-----------------------CCeEE
Confidence 45799999999999999999997653 344 4444322 245689999987 67899
Q ss_pred EEecCCCCCCcCCCCCCC--CCeEEEccCC
Q 031433 104 VVTDACLPLLSSGESAIS--ARVLINYELP 131 (159)
Q Consensus 104 V~Td~~~~~~~rGid~~~--v~~VI~~d~P 131 (159)
+.|+. +.+|+|+|+ ...||...+|
T Consensus 699 lG~~s----FwEGVD~p~~~~~~viI~kLP 724 (820)
T PRK07246 699 LGLGS----FWEGVDFVQADRMIEVITRLP 724 (820)
T ss_pred Eecch----hhCCCCCCCCCeEEEEEecCC
Confidence 99999 999999973 4555555555
|
|
| >TIGR00604 rad3 DNA repair helicase (rad3) | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0087 Score=54.42 Aligned_cols=97 Identities=18% Similarity=0.221 Sum_probs=66.1
Q ss_pred HHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCc------cEEEeecCCCHHHHHHHHHHHhcccccccccc
Q 031433 10 TLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADI------SFSSLHSDLAETERTLILEEFRHTAMKWNQKV 83 (159)
Q Consensus 10 ~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i------~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~ 83 (159)
.+.+++..+.. ..+..++||.+|-...+.+.+.+.+.+.. .....-+. ...++..++++|+..-
T Consensus 509 ~l~~~i~~~~~--~~pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~~-~~~~~~~~l~~f~~~~------- 578 (705)
T TIGR00604 509 NLGELLVEFSK--IIPDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVETK-DAQETSDALERYKQAV------- 578 (705)
T ss_pred HHHHHHHHHhh--cCCCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeCC-CcchHHHHHHHHHHHH-------
Confidence 34444444443 23578999999999999999988865310 12222222 2257889999997630
Q ss_pred cccCCCCCCCCCCCCceeEEEEe--cCCCCCCcCCCCCCC--CCeEEEccCCC
Q 031433 84 TEQSGDESETGKDEHKSHMIVVT--DACLPLLSSGESAIS--ARVLINYELPT 132 (159)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~vLV~T--d~~~~~~~rGid~~~--v~~VI~~d~P~ 132 (159)
..++..||+++ .- +++|||+++ ++.||...+|.
T Consensus 579 ------------~~~~gavL~av~gGk----~sEGIDf~~~~~r~ViivGlPf 615 (705)
T TIGR00604 579 ------------SEGRGAVLLSVAGGK----VSEGIDFCDDLGRAVIMVGIPY 615 (705)
T ss_pred ------------hcCCceEEEEecCCc----ccCccccCCCCCcEEEEEccCC
Confidence 00145699998 77 999999987 67899999886
|
All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0072 Score=54.62 Aligned_cols=110 Identities=15% Similarity=0.174 Sum_probs=85.1
Q ss_pred cHHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhccccccccccccc
Q 031433 7 FQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQ 86 (159)
Q Consensus 7 ~~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~ 86 (159)
+..+.++.++.++ .....|++|-..=....+.+...|.+.| .....+||.....+|+.++++|...+
T Consensus 730 Ki~~~l~~le~i~--~~skeK~viVSQwtsvLniv~~hi~~~g-~~y~si~Gqv~vK~Rq~iv~~FN~~k---------- 796 (901)
T KOG4439|consen 730 KIAMVLEILETIL--TSSKEKVVIVSQWTSVLNIVRKHIQKGG-HIYTSITGQVLVKDRQEIVDEFNQEK---------- 796 (901)
T ss_pred HHHHHHHHHHHHh--hcccceeeehhHHHHHHHHHHHHHhhCC-eeeeeecCccchhHHHHHHHHHHhcc----------
Confidence 4455666777663 3455777777776677788889999988 59999999999999999999998852
Q ss_pred CCCCCCCCCCCCceeEE-EEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcc
Q 031433 87 SGDESETGKDEHKSHMI-VVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC 144 (159)
Q Consensus 87 ~~~~~~~~~~~~~~~vL-V~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~ 144 (159)
+..+|+ ++=.+ .+-|+++.+.+|+|..|+=|++.==-|-+-|.
T Consensus 797 -----------~~~rVmLlSLtA----GGVGLNL~GaNHlilvDlHWNPaLEqQAcDRI 840 (901)
T KOG4439|consen 797 -----------GGARVMLLSLTA----GGVGLNLIGANHLILVDLHWNPALEQQACDRI 840 (901)
T ss_pred -----------CCceEEEEEEcc----CcceeeecccceEEEEecccCHHHHHHHHHHH
Confidence 234444 45455 78899999999999999999997666655555
|
|
| >COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0031 Score=57.48 Aligned_cols=83 Identities=11% Similarity=0.193 Sum_probs=61.7
Q ss_pred HHHHHHHHhcC-CCccEEEeecCCCHH--HHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEEEEecCCCCCCc
Q 031433 38 LDAVCSAVSNL-ADISFSSLHSDLAET--ERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLS 114 (159)
Q Consensus 38 ~~~l~~~L~~~-~~i~~~~l~~~~~~~--~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~ 114 (159)
++.+.+.|.+. +...+..+.+|.... .-...+++|.+| +..|||-|.+ ++
T Consensus 493 terieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~g-----------------------e~dILiGTQm----ia 545 (730)
T COG1198 493 TERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANG-----------------------EADILIGTQM----IA 545 (730)
T ss_pred HHHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCC-----------------------CCCeeecchh----hh
Confidence 56777777765 335888888886543 345689999998 8999999999 99
Q ss_pred CCCCCCCCCeEE--EccC----C--C----ChhHHHhhhhcccCC
Q 031433 115 SGESAISARVLI--NYEL----P--T----KKETYIRRMTTCLAA 147 (159)
Q Consensus 115 rGid~~~v~~VI--~~d~----P--~----~~~~yi~R~GR~~~~ 147 (159)
.|.|||++.+|. |-|. | + ...-+.|=.||+||.
T Consensus 546 KG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fqll~QvaGRAgR~ 590 (730)
T COG1198 546 KGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLLMQVAGRAGRA 590 (730)
T ss_pred cCCCcccceEEEEEechhhhcCCCcchHHHHHHHHHHHHhhhccC
Confidence 999999999865 4442 2 1 234567888888774
|
|
| >KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.00071 Score=61.77 Aligned_cols=52 Identities=10% Similarity=0.119 Sum_probs=41.1
Q ss_pred ceeEEEEecCCCCCCcCCCCCCCCCeEEEcc--------CCCChhHH----------HhhhhcccCCC-CeEEEE
Q 031433 99 KSHMIVVTDACLPLLSSGESAISARVLINYE--------LPTKKETY----------IRRMTTCLAAG-TSFSDI 154 (159)
Q Consensus 99 ~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d--------~P~~~~~y----------i~R~GR~~~~~-g~~i~~ 154 (159)
..-++|+|++ ++-.+.+|++.+||..+ --..++.| -||+||+||.+ |+|+-+
T Consensus 630 ~RLcVVaTNV----AETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtgpGHcYRL 700 (1172)
T KOG0926|consen 630 ERLCVVATNV----AETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTGPGHCYRL 700 (1172)
T ss_pred ceEEEEeccc----hhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCCCCceeeh
Confidence 6779999999 99999999999999654 33333333 59999998876 888754
|
|
| >PRK10917 ATP-dependent DNA helicase RecG; Provisional | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.007 Score=54.87 Aligned_cols=77 Identities=18% Similarity=0.231 Sum_probs=66.3
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcC----CCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCc
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSNL----ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHK 99 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~~----~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (159)
.+.+++|.++|+.-++..++.+++. + +++..+||+++..+|.++++...+| +
T Consensus 309 ~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~-i~v~ll~G~~~~~~r~~~~~~l~~g-----------------------~ 364 (681)
T PRK10917 309 AGYQAALMAPTEILAEQHYENLKKLLEPLG-IRVALLTGSLKGKERREILEAIASG-----------------------E 364 (681)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcC-cEEEEEcCCCCHHHHHHHHHHHhCC-----------------------C
Confidence 4679999999999999888777654 4 7999999999999999999999998 8
Q ss_pred eeEEEEecCCCCCCcCCCCCCCCCeEEE
Q 031433 100 SHMIVVTDACLPLLSSGESAISARVLIN 127 (159)
Q Consensus 100 ~~vLV~Td~~~~~~~rGid~~~v~~VI~ 127 (159)
..|+|+|.. ++...+.+.++.+||.
T Consensus 365 ~~IvVgT~~---ll~~~v~~~~l~lvVI 389 (681)
T PRK10917 365 ADIVIGTHA---LIQDDVEFHNLGLVII 389 (681)
T ss_pred CCEEEchHH---HhcccchhcccceEEE
Confidence 999999986 2566778899998884
|
|
| >COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0028 Score=58.16 Aligned_cols=91 Identities=13% Similarity=0.137 Sum_probs=71.5
Q ss_pred eecCcHHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhccccccccc
Q 031433 3 VSFTFQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQK 82 (159)
Q Consensus 3 v~~~~~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~ 82 (159)
+|.+..++...+++.+......++|+||-+.+.+..+.+++.|.+.+ ++..+|...-..++ .-+=.+...
T Consensus 407 vy~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~-i~h~VLNAk~h~~E--A~Iia~AG~------- 476 (822)
T COG0653 407 VYKTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAG-IPHNVLNAKNHARE--AEIIAQAGQ------- 476 (822)
T ss_pred cccchHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcC-CCceeeccccHHHH--HHHHhhcCC-------
Confidence 56777888888888888777889999999999999999999999998 78888887655333 323222222
Q ss_pred ccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCC
Q 031433 83 VTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISAR 123 (159)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~ 123 (159)
...|-|+|++ ++||-|+.--.
T Consensus 477 ----------------~gaVTiATNM----AGRGTDIkLg~ 497 (822)
T COG0653 477 ----------------PGAVTIATNM----AGRGTDIKLGG 497 (822)
T ss_pred ----------------CCcccccccc----ccCCcccccCC
Confidence 4568899999 99999986443
|
|
| >PRK05580 primosome assembly protein PriA; Validated | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.021 Score=51.78 Aligned_cols=77 Identities=13% Similarity=0.073 Sum_probs=64.1
Q ss_pred CCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEEE
Q 031433 25 GLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIV 104 (159)
Q Consensus 25 ~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLV 104 (159)
++++||.+++++-+..+.+.|++.-+..+..+||+++..+|.+.+.+...+ ..+|+|
T Consensus 190 g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g-----------------------~~~IVV 246 (679)
T PRK05580 190 GKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRG-----------------------EAKVVI 246 (679)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcC-----------------------CCCEEE
Confidence 689999999999999999999875226899999999999999999998888 789999
Q ss_pred EecCCCCCCcCCCCCCCCCeEEEcc
Q 031433 105 VTDACLPLLSSGESAISARVLINYE 129 (159)
Q Consensus 105 ~Td~~~~~~~rGid~~~v~~VI~~d 129 (159)
+|.- .. -+.+.++.+||--+
T Consensus 247 gTrs----al-~~p~~~l~liVvDE 266 (679)
T PRK05580 247 GARS----AL-FLPFKNLGLIIVDE 266 (679)
T ss_pred eccH----Hh-cccccCCCEEEEEC
Confidence 9974 22 25567788877555
|
|
| >smart00492 HELICc3 helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.056 Score=39.53 Aligned_cols=51 Identities=22% Similarity=0.285 Sum_probs=38.2
Q ss_pred eecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCC--CeEEEccCCC
Q 031433 56 LHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISA--RVLINYELPT 132 (159)
Q Consensus 56 l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v--~~VI~~d~P~ 132 (159)
+.-+....+...++++|+... +..||+++.- +++|+|+++- +.||...+|.
T Consensus 27 ~~e~~~~~~~~~~l~~f~~~~----------------------~~~iL~~~~~----~~EGiD~~g~~~r~vii~glPf 79 (141)
T smart00492 27 LVQGEDGKETGKLLEKYVEAC----------------------ENAILLATAR----FSEGVDFPGDYLRAVIIDGLPF 79 (141)
T ss_pred EEeCCChhHHHHHHHHHHHcC----------------------CCEEEEEccc----eecceecCCCCeeEEEEEecCC
Confidence 333445556788999999851 2369999988 9999999874 5788888773
|
|
| >TIGR00595 priA primosomal protein N' | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.025 Score=49.62 Aligned_cols=90 Identities=14% Similarity=0.126 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCC
Q 031433 9 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSG 88 (159)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~ 88 (159)
+....++...+. .++++||.+++..-+..+++.|++.-...+..+||+++..+|.+.+.+-.+|
T Consensus 12 ~v~l~~i~~~l~---~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g------------- 75 (505)
T TIGR00595 12 EVYLQAIEKVLA---LGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNG------------- 75 (505)
T ss_pred HHHHHHHHHHHH---cCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcC-------------
Confidence 334444444433 3679999999999999999999875335899999999999999999888887
Q ss_pred CCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEcc
Q 031433 89 DESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYE 129 (159)
Q Consensus 89 ~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d 129 (159)
+.+|+|+|.. +. =..+++..+||--+
T Consensus 76 ----------~~~IVVGTrs----al-f~p~~~l~lIIVDE 101 (505)
T TIGR00595 76 ----------EILVVIGTRS----AL-FLPFKNLGLIIVDE 101 (505)
T ss_pred ----------CCCEEECChH----HH-cCcccCCCEEEEEC
Confidence 7889999875 22 24567778877544
|
All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.0022 Score=62.40 Aligned_cols=92 Identities=13% Similarity=0.240 Sum_probs=75.7
Q ss_pred CcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCC-----------HHHHHHHHHHHhcccccccccccccCCCCCCCC
Q 031433 26 LPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA-----------ETERTLILEEFRHTAMKWNQKVTEQSGDESETG 94 (159)
Q Consensus 26 ~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~-----------~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~ 94 (159)
-..|+||+.+.++-.+.+.+++..-..+..+.|.+. .-.+.+++..|+..
T Consensus 293 l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~------------------- 353 (1606)
T KOG0701|consen 293 LSGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFH------------------- 353 (1606)
T ss_pred hhheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhh-------------------
Confidence 455999999999998888888763224444555432 12356688888887
Q ss_pred CCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcc
Q 031433 95 KDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC 144 (159)
Q Consensus 95 ~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~ 144 (159)
.+++|+.|.+ +.+|+|++.++.|+.++.|.....|+|+.||+
T Consensus 354 ----~ln~L~~~~~----~~e~~d~~~~~~~~~~~~~~~~~~~vq~~~r~ 395 (1606)
T KOG0701|consen 354 ----ELNLLIATSV----LEEGVDVPKCNLVVLFDAPTYYRSYVQKKGRA 395 (1606)
T ss_pred ----hhhHHHHHHH----HHhhcchhhhhhheeccCcchHHHHHHhhccc
Confidence 8999999999 99999999999999999999999999999997
|
|
| >TIGR00643 recG ATP-dependent DNA helicase RecG | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.018 Score=51.82 Aligned_cols=77 Identities=19% Similarity=0.251 Sum_probs=65.9
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcC----CCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCc
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSNL----ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHK 99 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~~----~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (159)
.+.+++|-++|+.-++..++.+++. + +++..+||+++..+|...++...+| +
T Consensus 283 ~g~qvlilaPT~~LA~Q~~~~~~~l~~~~g-i~v~lltg~~~~~~r~~~~~~i~~g-----------------------~ 338 (630)
T TIGR00643 283 AGYQVALMAPTEILAEQHYNSLRNLLAPLG-IEVALLTGSLKGKRRKELLETIASG-----------------------Q 338 (630)
T ss_pred cCCcEEEECCHHHHHHHHHHHHHHHhcccC-cEEEEEecCCCHHHHHHHHHHHhCC-----------------------C
Confidence 4679999999999999888777653 4 7999999999999999999999998 8
Q ss_pred eeEEEEecCCCCCCcCCCCCCCCCeEEE
Q 031433 100 SHMIVVTDACLPLLSSGESAISARVLIN 127 (159)
Q Consensus 100 ~~vLV~Td~~~~~~~rGid~~~v~~VI~ 127 (159)
.+|+|+|.. ++...+.+.++.+||-
T Consensus 339 ~~IiVgT~~---ll~~~~~~~~l~lvVI 363 (630)
T TIGR00643 339 IHLVVGTHA---LIQEKVEFKRLALVII 363 (630)
T ss_pred CCEEEecHH---HHhccccccccceEEE
Confidence 999999987 3556788888988874
|
|
| >PRK14873 primosome assembly protein PriA; Provisional | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.058 Score=48.96 Aligned_cols=92 Identities=12% Similarity=0.147 Sum_probs=71.7
Q ss_pred cHHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCC-ccEEEeecCCCHHHHHHHHHHHhcccccccccccc
Q 031433 7 FQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLAD-ISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTE 85 (159)
Q Consensus 7 ~~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~-i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~ 85 (159)
+.+..++++...+. .++++||.++....+..+.+.|+..-+ -.+..+|++++..+|.+.+.+.++|
T Consensus 173 KTevyl~~i~~~l~---~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G---------- 239 (665)
T PRK14873 173 WARRLAAAAAATLR---AGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRG---------- 239 (665)
T ss_pred HHHHHHHHHHHHHH---cCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCC----------
Confidence 34555666665554 478999999999999999999997632 4799999999999999999999998
Q ss_pred cCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEcc
Q 031433 86 QSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYE 129 (159)
Q Consensus 86 ~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d 129 (159)
+.+|+|-|-. +-=.=+++..+||-.|
T Consensus 240 -------------~~~IViGtRS-----AvFaP~~~LgLIIvdE 265 (665)
T PRK14873 240 -------------QARVVVGTRS-----AVFAPVEDLGLVAIWD 265 (665)
T ss_pred -------------CCcEEEEcce-----eEEeccCCCCEEEEEc
Confidence 8899998874 3334456666766554
|
|
| >PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.049 Score=50.16 Aligned_cols=94 Identities=16% Similarity=0.216 Sum_probs=69.3
Q ss_pred HHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCC
Q 031433 13 ELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESE 92 (159)
Q Consensus 13 ~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~ 92 (159)
.|+..+. .++++-|||+|...++.+++..+..+. ++..++++-+..+ ++.|.
T Consensus 274 ~L~~~L~----~gknIcvfsSt~~~~~~v~~~~~~~~~-~Vl~l~s~~~~~d----v~~W~------------------- 325 (824)
T PF02399_consen 274 ELLARLN----AGKNICVFSSTVSFAEIVARFCARFTK-KVLVLNSTDKLED----VESWK------------------- 325 (824)
T ss_pred HHHHHHh----CCCcEEEEeChHHHHHHHHHHHHhcCC-eEEEEcCCCCccc----ccccc-------------------
Confidence 4444444 378899999999999999999998874 8888888665552 23332
Q ss_pred CCCCCCceeEEEEecCCCCCCcCCCCCCCCCe--EEEc--cCC--CChhHHHhhhhcc
Q 031433 93 TGKDEHKSHMIVVTDACLPLLSSGESAISARV--LINY--ELP--TKKETYIRRMTTC 144 (159)
Q Consensus 93 ~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~--VI~~--d~P--~~~~~yi~R~GR~ 144 (159)
+.+|++-|.+ ..-|+++.+... |.-| ... .+..+..|.+||+
T Consensus 326 ------~~~VviYT~~----itvG~Sf~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRv 373 (824)
T PF02399_consen 326 ------KYDVVIYTPV----ITVGLSFEEKHFDSMFAYVKPMSYGPDMVSVYQMLGRV 373 (824)
T ss_pred ------ceeEEEEece----EEEEeccchhhceEEEEEecCCCCCCcHHHHHHHHHHH
Confidence 6899999999 999999976543 4444 222 3455788999998
|
It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication |
| >TIGR00580 mfd transcription-repair coupling factor (mfd) | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.043 Score=51.57 Aligned_cols=78 Identities=17% Similarity=0.128 Sum_probs=66.6
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcC----CCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCc
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSNL----ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHK 99 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~~----~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (159)
.+.+++|.++|..-++..++.+++. + +.+..++|..+..++.+++++++.| +
T Consensus 499 ~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~-i~v~~Lsg~~~~~e~~~~~~~l~~g-----------------------~ 554 (926)
T TIGR00580 499 DGKQVAVLVPTTLLAQQHFETFKERFANFP-VTIELLSRFRSAKEQNEILKELASG-----------------------K 554 (926)
T ss_pred hCCeEEEEeCcHHHHHHHHHHHHHHhccCC-cEEEEEeccccHHHHHHHHHHHHcC-----------------------C
Confidence 3589999999999999988877753 4 6888999999999999999999998 8
Q ss_pred eeEEEEecCCCCCCcCCCCCCCCCeEEEc
Q 031433 100 SHMIVVTDACLPLLSSGESAISARVLINY 128 (159)
Q Consensus 100 ~~vLV~Td~~~~~~~rGid~~~v~~VI~~ 128 (159)
++|+|+|.. ++.+.+.+.++.++|--
T Consensus 555 ~dIVIGTp~---ll~~~v~f~~L~llVID 580 (926)
T TIGR00580 555 IDILIGTHK---LLQKDVKFKDLGLLIID 580 (926)
T ss_pred ceEEEchHH---HhhCCCCcccCCEEEee
Confidence 999999985 36677889999988753
|
All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families. |
| >TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.036 Score=52.42 Aligned_cols=110 Identities=11% Similarity=0.062 Sum_probs=68.3
Q ss_pred EEEeCchHHHHHHHHHHhcC-----CCccEEEeecCCCHHHHHHHHHHHhccccccccc------ccccCCCCCCCCCCC
Q 031433 29 IVCCSSRDELDAVCSAVSNL-----ADISFSSLHSDLAETERTLILEEFRHTAMKWNQK------VTEQSGDESETGKDE 97 (159)
Q Consensus 29 iIF~ns~~~~~~l~~~L~~~-----~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~------~~~~~~~~~~~~~~~ 97 (159)
+|=.++++.+-.+++.|-.. ..+...++|+..+...|..+.++...--.+..+. ....-+. .....
T Consensus 760 liR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~---~~~~~ 836 (1110)
T TIGR02562 760 LIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQ---NSPAL 836 (1110)
T ss_pred EEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHh---ccccc
Confidence 45567777777777777654 2256888999998888877655532211111100 0000000 11122
Q ss_pred CceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCCC
Q 031433 98 HKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAG 148 (159)
Q Consensus 98 ~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~~ 148 (159)
+...|+|+|.+ .+-|+|+. .+++| --|.+..+.+||+||+.|.+
T Consensus 837 ~~~~i~v~Tqv----~E~g~D~d-fd~~~--~~~~~~~sliQ~aGR~~R~~ 880 (1110)
T TIGR02562 837 NHLFIVLATPV----EEVGRDHD-YDWAI--ADPSSMRSIIQLAGRVNRHR 880 (1110)
T ss_pred CCCeEEEEeee----EEEEeccc-CCeee--eccCcHHHHHHHhhcccccc
Confidence 36789999999 99999954 34433 34778999999999995544
|
The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc. |
| >TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4 | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.086 Score=47.62 Aligned_cols=94 Identities=10% Similarity=-0.013 Sum_probs=66.5
Q ss_pred HHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCC
Q 031433 11 LVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDE 90 (159)
Q Consensus 11 l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~ 90 (159)
+.+.+..++. ..+.+++|-+.|.+..+.+++.|+..-. ....+.|+.+ .|...+++|+..-
T Consensus 458 ~~~~~~~~~~--~~~G~~lvLfTS~~~~~~~~~~l~~~l~-~~~l~qg~~~--~~~~l~~~f~~~~-------------- 518 (636)
T TIGR03117 458 VSLSTAAILR--KAQGGTLVLTTAFSHISAIGQLVELGIP-AEIVIQSEKN--RLASAEQQFLALY-------------- 518 (636)
T ss_pred HHHHHHHHHH--HcCCCEEEEechHHHHHHHHHHHHhhcC-CCEEEeCCCc--cHHHHHHHHHHhh--------------
Confidence 4444444443 2346888888899999999999977522 4456666543 4566889998830
Q ss_pred CCCCCCCCceeEEEEecCCCCCCcCCCCC----------CCCCeEEEccCCC
Q 031433 91 SETGKDEHKSHMIVVTDACLPLLSSGESA----------ISARVLINYELPT 132 (159)
Q Consensus 91 ~~~~~~~~~~~vLV~Td~~~~~~~rGid~----------~~v~~VI~~d~P~ 132 (159)
..+.-.||+.|+- +-+|+|+ ..+++||..-+|.
T Consensus 519 -----~~~~~~vL~gt~s----fweGvDv~~~~~~p~~G~~Ls~ViI~kLPF 561 (636)
T TIGR03117 519 -----ANGIQPVLIAAGG----AWTGIDLTHKPVSPDKDNLLTDLIITCAPF 561 (636)
T ss_pred -----cCCCCcEEEeCCc----cccccccCCccCCCCCCCcccEEEEEeCCC
Confidence 0115789999999 9999999 3478899888884
|
Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome. |
| >KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.087 Score=46.25 Aligned_cols=122 Identities=13% Similarity=0.160 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHcc--CCCCCcEEEEeCchHHHHHHHHHHhcC--------CCccEEEeecCCCHHHHHHHHHHHhcccc
Q 031433 8 QETLVELLHLVVAG--RRPGLPMIVCCSSRDELDAVCSAVSNL--------ADISFSSLHSDLAETERTLILEEFRHTAM 77 (159)
Q Consensus 8 ~~~l~~ll~~l~~~--~~~~~k~iIF~ns~~~~~~l~~~L~~~--------~~i~~~~l~~~~~~~~R~~~l~~F~~~~~ 77 (159)
.+.+...++..+.. .+...-++||-...+..+..++.+... |.+++..|| +.+..++ |+..
T Consensus 234 rDylEaairtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~i---Fep~-- 304 (699)
T KOG0925|consen 234 RDYLEAAIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRI---FEPA-- 304 (699)
T ss_pred hhHHHHHHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccc---cCCC--
Confidence 35555444433321 223577999999999999999888743 457888998 2222222 2221
Q ss_pred cccccccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccC------------------CCChhHHHh
Q 031433 78 KWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYEL------------------PTKKETYIR 139 (159)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~------------------P~~~~~yi~ 139 (159)
+ ++.......+|+|+|.+ ++-.+.++++.+||.-++ |-+..+-.|
T Consensus 305 -----p--------~~~~~~~~RkvVvstni----aetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~q 367 (699)
T KOG0925|consen 305 -----P--------EKRNGAYGRKVVVSTNI----AETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQ 367 (699)
T ss_pred -----C--------cccCCCccceEEEEecc----hheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHH
Confidence 0 12222336889999999 999999999999997654 345566789
Q ss_pred hhhcccC-CCCeEEEEE
Q 031433 140 RMTTCLA-AGTSFSDII 155 (159)
Q Consensus 140 R~GR~~~-~~g~~i~~v 155 (159)
|.||+|| ++|.+..+-
T Consensus 368 R~gragrt~pGkcfrLY 384 (699)
T KOG0925|consen 368 RAGRAGRTRPGKCFRLY 384 (699)
T ss_pred HhhhccCCCCCceEEee
Confidence 9999966 568887653
|
|
| >PF13871 Helicase_C_4: Helicase_C-like | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.033 Score=45.39 Aligned_cols=46 Identities=26% Similarity=0.351 Sum_probs=39.1
Q ss_pred ceeEEEEecCCCCCCcCCCCCCC--------CCeEEEccCCCChhHHHhhhhcccCCC
Q 031433 99 KSHMIVVTDACLPLLSSGESAIS--------ARVLINYELPTKKETYIRRMTTCLAAG 148 (159)
Q Consensus 99 ~~~vLV~Td~~~~~~~rGid~~~--------v~~VI~~d~P~~~~~yi~R~GR~~~~~ 148 (159)
+..|+|.|++ .+-||.++. -++-|..++||+++..+|..||+-|.+
T Consensus 61 ~k~v~iis~A----gstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsn 114 (278)
T PF13871_consen 61 EKDVAIISDA----GSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSN 114 (278)
T ss_pred CceEEEEecc----cccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccc
Confidence 8899999999 999998874 235678899999999999999995543
|
|
| >COG1110 Reverse gyrase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.067 Score=50.37 Aligned_cols=63 Identities=16% Similarity=0.281 Sum_probs=53.3
Q ss_pred CCCCCcEEEEeCchHHHHHHHHHHhcC----C--CccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCC
Q 031433 22 RRPGLPMIVCCSSRDELDAVCSAVSNL----A--DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGK 95 (159)
Q Consensus 22 ~~~~~k~iIF~ns~~~~~~l~~~L~~~----~--~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~ 95 (159)
..+++++++.++|..-+...++.|.+. + .+.+. +|+.|+.++++.++++|.+|
T Consensus 122 a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~-yh~~l~~~ekee~le~i~~g-------------------- 180 (1187)
T COG1110 122 AKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVV-YHSALPTKEKEEALERIESG-------------------- 180 (1187)
T ss_pred HhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeee-eccccchHHHHHHHHHHhcC--------------------
Confidence 455699999999999999998888865 2 12333 99999999999999999999
Q ss_pred CCCceeEEEEecC
Q 031433 96 DEHKSHMIVVTDA 108 (159)
Q Consensus 96 ~~~~~~vLV~Td~ 108 (159)
..+|||+|..
T Consensus 181 ---dfdIlitTs~ 190 (1187)
T COG1110 181 ---DFDILITTSQ 190 (1187)
T ss_pred ---CccEEEEeHH
Confidence 8999999986
|
|
| >COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.058 Score=49.38 Aligned_cols=90 Identities=17% Similarity=0.146 Sum_probs=71.5
Q ss_pred cHHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhccccccccccccc
Q 031433 7 FQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQ 86 (159)
Q Consensus 7 ~~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~ 86 (159)
+.|..++++...++ .++++||-++.......+.+.++..-+.++..+|+++++.+|...+.+.+.|
T Consensus 230 KTEvYl~~i~~~L~---~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G----------- 295 (730)
T COG1198 230 KTEVYLEAIAKVLA---QGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRG----------- 295 (730)
T ss_pred HHHHHHHHHHHHHH---cCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcC-----------
Confidence 44666777776665 5799999999999999999999887336999999999999999999999998
Q ss_pred CCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEE
Q 031433 87 SGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLIN 127 (159)
Q Consensus 87 ~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~ 127 (159)
+.+|+|-|-. +-=.=+++..+||-
T Consensus 296 ------------~~~vVIGtRS-----AlF~Pf~~LGLIIv 319 (730)
T COG1198 296 ------------EARVVIGTRS-----ALFLPFKNLGLIIV 319 (730)
T ss_pred ------------CceEEEEech-----hhcCchhhccEEEE
Confidence 8899988764 22334556666553
|
|
| >smart00491 HELICc2 helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.29 Score=35.73 Aligned_cols=70 Identities=14% Similarity=0.165 Sum_probs=40.9
Q ss_pred HHHHHHHHhcCCC---ccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEEEEec--CCCCC
Q 031433 38 LDAVCSAVSNLAD---ISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTD--ACLPL 112 (159)
Q Consensus 38 ~~~l~~~L~~~~~---i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLV~Td--~~~~~ 112 (159)
.+.+.+.+.+.+. -.....-+ ....+..+++++|++.. . .+ ..||+++. -
T Consensus 4 m~~v~~~~~~~~~~~~~~~i~~e~-~~~~~~~~~l~~f~~~~------------------~-~~-g~iL~~v~~G~---- 58 (142)
T smart00491 4 LEQVVEYWKENGILEINKPVFIEG-KDSGETEELLEKYSAAC------------------E-AR-GALLLAVARGK---- 58 (142)
T ss_pred HHHHHHHHHhcCccccCceEEEEC-CCCchHHHHHHHHHHhc------------------C-CC-CEEEEEEeCCe----
Confidence 4555566655431 02222223 22334578899999851 0 00 24776663 3
Q ss_pred CcCCCCCCC--CCeEEEccCCC
Q 031433 113 LSSGESAIS--ARVLINYELPT 132 (159)
Q Consensus 113 ~~rGid~~~--v~~VI~~d~P~ 132 (159)
+++|+|+++ ++.||...+|.
T Consensus 59 ~~EGiD~~g~~~r~vii~glPf 80 (142)
T smart00491 59 VSEGIDFPDDLGRAVIIVGIPF 80 (142)
T ss_pred eecceecCCCccEEEEEEecCC
Confidence 689999987 56798888873
|
|
| >PRK10689 transcription-repair coupling factor; Provisional | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.12 Score=49.67 Aligned_cols=78 Identities=19% Similarity=0.109 Sum_probs=64.4
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcC-C--CccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCce
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSNL-A--DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKS 100 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~~-~--~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (159)
.+.+++|.|+|+.-+..+++.+++. + .+.+..++|..+..++.++++...++ .+
T Consensus 648 ~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g-----------------------~~ 704 (1147)
T PRK10689 648 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEG-----------------------KI 704 (1147)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhC-----------------------CC
Confidence 4689999999999999998888753 1 26788899999999999999999887 79
Q ss_pred eEEEEecCCCCCCcCCCCCCCCCeEEE
Q 031433 101 HMIVVTDACLPLLSSGESAISARVLIN 127 (159)
Q Consensus 101 ~vLV~Td~~~~~~~rGid~~~v~~VI~ 127 (159)
+|+|+|.- ++...+.+.++.++|-
T Consensus 705 dIVVgTp~---lL~~~v~~~~L~lLVI 728 (1147)
T PRK10689 705 DILIGTHK---LLQSDVKWKDLGLLIV 728 (1147)
T ss_pred CEEEECHH---HHhCCCCHhhCCEEEE
Confidence 99999964 2555677888888773
|
|
| >COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.2 Score=44.07 Aligned_cols=90 Identities=14% Similarity=0.254 Sum_probs=61.3
Q ss_pred HHHHHHHHHcc-CCCCCcEEEEeCchHHHHHHHHHHhcCC----CccEEEeecCCCHHHHHHHHHHHhcccccccccccc
Q 031433 11 LVELLHLVVAG-RRPGLPMIVCCSSRDELDAVCSAVSNLA----DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTE 85 (159)
Q Consensus 11 l~~ll~~l~~~-~~~~~k~iIF~ns~~~~~~l~~~L~~~~----~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~ 85 (159)
++-+|+.+... .....++||.++|++-+..+++.+...+ .+.+..++|+++...+...++ .+
T Consensus 84 ~lP~l~~l~~~~~~~~~~aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~---~~---------- 150 (513)
T COG0513 84 LLPLLQKILKSVERKYVSALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALK---RG---------- 150 (513)
T ss_pred HHHHHHHHhcccccCCCceEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHh---cC----------
Confidence 44566654421 2222229999999999999988887642 367899999999887764444 34
Q ss_pred cCCCCCCCCCCCCceeEEEEecCCC-CCCcCC-CCCCCCCeEEE
Q 031433 86 QSGDESETGKDEHKSHMIVVTDACL-PLLSSG-ESAISARVLIN 127 (159)
Q Consensus 86 ~~~~~~~~~~~~~~~~vLV~Td~~~-~~~~rG-id~~~v~~VI~ 127 (159)
.+|+|+|+-++ -++.+| +|+..+.++|.
T Consensus 151 --------------~~ivVaTPGRllD~i~~~~l~l~~v~~lVl 180 (513)
T COG0513 151 --------------VDIVVATPGRLLDLIKRGKLDLSGVETLVL 180 (513)
T ss_pred --------------CCEEEECccHHHHHHHcCCcchhhcCEEEe
Confidence 78999997410 014555 88888888774
|
|
| >COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=94.45 E-value=0.31 Score=44.16 Aligned_cols=99 Identities=20% Similarity=0.235 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEeCchHHH----HHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhccccccccccc
Q 031433 9 ETLVELLHLVVAGRRPGLPMIVCCSSRDEL----DAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVT 84 (159)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~----~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~ 84 (159)
.+++.++..+.. -..+.++..-++|-=-+ +.+.++|...| +.+..+.|.+...+|.+++++..+|
T Consensus 296 KTvVA~laml~a-i~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~-i~V~lLtG~~kgk~r~~~l~~l~~G--------- 364 (677)
T COG1200 296 KTVVALLAMLAA-IEAGYQAALMAPTEILAEQHYESLRKWLEPLG-IRVALLTGSLKGKARKEILEQLASG--------- 364 (677)
T ss_pred HHHHHHHHHHHH-HHcCCeeEEeccHHHHHHHHHHHHHHHhhhcC-CeEEEeecccchhHHHHHHHHHhCC---------
Confidence 345556654444 56688999999986444 46666666667 8999999999999999999999999
Q ss_pred ccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhc
Q 031433 85 EQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTT 143 (159)
Q Consensus 85 ~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR 143 (159)
+++++|-|-+ |+...++|.+.-+||- +=-||.|-
T Consensus 365 --------------~~~ivVGTHA---LiQd~V~F~~LgLVIi--------DEQHRFGV 398 (677)
T COG1200 365 --------------EIDIVVGTHA---LIQDKVEFHNLGLVII--------DEQHRFGV 398 (677)
T ss_pred --------------CCCEEEEcch---hhhcceeecceeEEEE--------eccccccH
Confidence 8999999998 5788899999998874 23477774
|
|
| >PRK11776 ATP-dependent RNA helicase DbpA; Provisional | Back alignment and domain information |
|---|
Probab=94.35 E-value=0.19 Score=43.14 Aligned_cols=89 Identities=22% Similarity=0.262 Sum_probs=59.7
Q ss_pred HHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcC----CCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCC
Q 031433 13 ELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL----ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSG 88 (159)
Q Consensus 13 ~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~----~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~ 88 (159)
-++..+.. .....++||.|+|++-+..+++.++.. ..+.+..++|+.+...+...+ ..
T Consensus 61 pil~~l~~-~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l---~~-------------- 122 (460)
T PRK11776 61 GLLQKLDV-KRFRVQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSL---EH-------------- 122 (460)
T ss_pred HHHHHhhh-ccCCceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHh---cC--------------
Confidence 34444432 333457999999999999988877753 237899999999887655433 33
Q ss_pred CCCCCCCCCCceeEEEEecCCCCC-Cc-CCCCCCCCCeEEEcc
Q 031433 89 DESETGKDEHKSHMIVVTDACLPL-LS-SGESAISARVLINYE 129 (159)
Q Consensus 89 ~~~~~~~~~~~~~vLV~Td~~~~~-~~-rGid~~~v~~VI~~d 129 (159)
..+|+|+|+-.+.. +. ..+++.++++||.-+
T Consensus 123 ----------~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDE 155 (460)
T PRK11776 123 ----------GAHIIVGTPGRILDHLRKGTLDLDALNTLVLDE 155 (460)
T ss_pred ----------CCCEEEEChHHHHHHHHcCCccHHHCCEEEEEC
Confidence 57899999531100 33 357888999888544
|
|
| >KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.2 Score=46.45 Aligned_cols=98 Identities=15% Similarity=0.175 Sum_probs=79.3
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhcC------C-----------CccEEEeecCCCHHHHHHHHHHHhcccccccccccc
Q 031433 23 RPGLPMIVCCSSRDELDAVCSAVSNL------A-----------DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTE 85 (159)
Q Consensus 23 ~~~~k~iIF~ns~~~~~~l~~~L~~~------~-----------~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~ 85 (159)
.-+.++|||..+....+-+.+.|.+. | ....+-+.|..+..+|++.+++|....
T Consensus 717 ~~g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~--------- 787 (1387)
T KOG1016|consen 717 QIGEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEP--------- 787 (1387)
T ss_pred ccCceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCC---------
Confidence 34689999999999988888888765 1 124456778889999999999998852
Q ss_pred cCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcc
Q 031433 86 QSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC 144 (159)
Q Consensus 86 ~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~ 144 (159)
+-..-+|++|-. ..-|+++-..+-+|.||..|++.-=.|.+-|+
T Consensus 788 -----------~lsWlfllstra----g~lGinLIsanr~~ifda~wnpchdaqavcRv 831 (1387)
T KOG1016|consen 788 -----------GLSWLFLLSTRA----GSLGINLISANRCIIFDACWNPCHDAQAVCRV 831 (1387)
T ss_pred -----------Cceeeeeehhcc----ccccceeeccceEEEEEeecCccccchhhhhh
Confidence 113458899999 99999999999999999999998888877776
|
|
| >PRK14701 reverse gyrase; Provisional | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.27 Score=48.96 Aligned_cols=63 Identities=16% Similarity=0.263 Sum_probs=54.4
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcCC-----CccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCC
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSNLA-----DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEH 98 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~~~-----~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (159)
.+.+++|.++|+.-+..+++.|+... .+.+..+||+++.+++.+.++.+++|
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g----------------------- 177 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENG----------------------- 177 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcC-----------------------
Confidence 46799999999999999999888731 25788999999999999999999987
Q ss_pred ceeEEEEecCC
Q 031433 99 KSHMIVVTDAC 109 (159)
Q Consensus 99 ~~~vLV~Td~~ 109 (159)
..+|||+|+-.
T Consensus 178 ~~dILV~TPgr 188 (1638)
T PRK14701 178 DFDILVTTAQF 188 (1638)
T ss_pred CCCEEEECCch
Confidence 78999999874
|
|
| >cd00268 DEADc DEAD-box helicases | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.48 Score=35.59 Aligned_cols=90 Identities=13% Similarity=0.191 Sum_probs=57.6
Q ss_pred HHHHHHHHHccC-CCCCcEEEEeCchHHHHHHHHHHhcC---CCccEEEeecCCCHHHHHHHHHHHhccccccccccccc
Q 031433 11 LVELLHLVVAGR-RPGLPMIVCCSSRDELDAVCSAVSNL---ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQ 86 (159)
Q Consensus 11 l~~ll~~l~~~~-~~~~k~iIF~ns~~~~~~l~~~L~~~---~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~ 86 (159)
+..++..+.... ..+.++||.|+++.-+....+.++.. ..+.+..++|+.+..++...++ .
T Consensus 54 ~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~----------- 118 (203)
T cd00268 54 LIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLK----R----------- 118 (203)
T ss_pred HHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhc----C-----------
Confidence 344555554411 35678999999999998877766554 2378889999988766543332 2
Q ss_pred CCCCCCCCCCCCceeEEEEecCCCCC-C-cCCCCCCCCCeEEE
Q 031433 87 SGDESETGKDEHKSHMIVVTDACLPL-L-SSGESAISARVLIN 127 (159)
Q Consensus 87 ~~~~~~~~~~~~~~~vLV~Td~~~~~-~-~rGid~~~v~~VI~ 127 (159)
...|+|+|.-.+.. + ..-.++++++++|.
T Consensus 119 ------------~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIv 149 (203)
T cd00268 119 ------------GPHIVVATPGRLLDLLERGKLDLSKVKYLVL 149 (203)
T ss_pred ------------CCCEEEEChHHHHHHHHcCCCChhhCCEEEE
Confidence 57899999521000 1 22256777888774
|
A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region. |
| >PRK11634 ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
Probab=93.59 E-value=0.38 Score=43.45 Aligned_cols=86 Identities=17% Similarity=0.153 Sum_probs=56.9
Q ss_pred HHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcC----CCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCC
Q 031433 14 LLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL----ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGD 89 (159)
Q Consensus 14 ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~----~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~ 89 (159)
+++.+.. .....++||.|+|++-+..+++.+... ..+.+..+||+.+.+.+...+ +.
T Consensus 64 ll~~l~~-~~~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l---~~--------------- 124 (629)
T PRK11634 64 LLHNLDP-ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL---RQ--------------- 124 (629)
T ss_pred HHHHhhh-ccCCCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHh---cC---------------
Confidence 3444433 334568999999999999888776643 237899999998776554433 33
Q ss_pred CCCCCCCCCceeEEEEecCCCC-CCcC-CCCCCCCCeEEE
Q 031433 90 ESETGKDEHKSHMIVVTDACLP-LLSS-GESAISARVLIN 127 (159)
Q Consensus 90 ~~~~~~~~~~~~vLV~Td~~~~-~~~r-Gid~~~v~~VI~ 127 (159)
..+|+|+|+-.+- .+.+ .+++.++.+||.
T Consensus 125 ---------~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVl 155 (629)
T PRK11634 125 ---------GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVL 155 (629)
T ss_pred ---------CCCEEEECHHHHHHHHHcCCcchhhceEEEe
Confidence 4789999942100 0334 377888888774
|
|
| >TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family | Back alignment and domain information |
|---|
Probab=93.50 E-value=0.67 Score=40.11 Aligned_cols=60 Identities=13% Similarity=0.156 Sum_probs=53.3
Q ss_pred CCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEEE
Q 031433 25 GLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIV 104 (159)
Q Consensus 25 ~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLV 104 (159)
...+||.+++++-++...+.|...+ +.+..++++.+.+++..++.....+ +.++++
T Consensus 51 ~~~~lVi~P~~~L~~dq~~~l~~~g-i~~~~l~~~~~~~~~~~i~~~~~~~-----------------------~~~il~ 106 (470)
T TIGR00614 51 DGITLVISPLISLMEDQVLQLKASG-IPATFLNSSQSKEQQKNVLTDLKDG-----------------------KIKLLY 106 (470)
T ss_pred CCcEEEEecHHHHHHHHHHHHHHcC-CcEEEEeCCCCHHHHHHHHHHHhcC-----------------------CCCEEE
Confidence 4679999999999999999999887 7999999999999999999998887 788888
Q ss_pred EecC
Q 031433 105 VTDA 108 (159)
Q Consensus 105 ~Td~ 108 (159)
+|+-
T Consensus 107 ~TPe 110 (470)
T TIGR00614 107 VTPE 110 (470)
T ss_pred ECHH
Confidence 8875
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=92.79 E-value=0.035 Score=50.37 Aligned_cols=92 Identities=11% Similarity=0.052 Sum_probs=78.0
Q ss_pred CcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEE-E
Q 031433 26 LPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMI-V 104 (159)
Q Consensus 26 ~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL-V 104 (159)
.+++||++-..-.+.+...|...+ +....+.|+|+...|.+.+..|..++ ..++| +
T Consensus 540 ~kiiifsq~~~~l~l~~~~l~~~~-~~~~~~~g~~~~~~r~~s~~~~~~~~----------------------~~~vll~ 596 (674)
T KOG1001|consen 540 PKIVIFSQLIWGLALVCLRLFFKG-FVFLRYDGEMLMKIRTKSFTDFPCDP----------------------LVTALLM 596 (674)
T ss_pred CceeeehhHHHHHHHhhhhhhhcc-cccchhhhhhHHHHHHhhhcccccCc----------------------cHHHHHH
Confidence 499999999999999999999777 68888899999999999999999762 55655 5
Q ss_pred EecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcc
Q 031433 105 VTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC 144 (159)
Q Consensus 105 ~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~ 144 (159)
+.-+ ..-|+++..+++|+..|+=|++..--|-+-|+
T Consensus 597 Slka----g~~glnlt~a~~v~~~d~~wnp~~eeQaidR~ 632 (674)
T KOG1001|consen 597 SLKA----GKVGLNLTAASHVLLMDPWWNPAVEEQAIDRA 632 (674)
T ss_pred HHHH----hhhhhchhhhhHHHhhchhcChHHHHHHHHHH
Confidence 5666 88999999999999999999887776655555
|
|
| >cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily | Back alignment and domain information |
|---|
Probab=92.52 E-value=0.26 Score=32.52 Aligned_cols=38 Identities=11% Similarity=0.061 Sum_probs=33.0
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCC
Q 031433 23 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 61 (159)
Q Consensus 23 ~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~ 61 (159)
.+++++++||++-..+...+..|+..|+ ++..+.|++.
T Consensus 49 ~~~~~vvl~c~~g~~a~~~a~~L~~~G~-~v~~l~GG~~ 86 (90)
T cd01524 49 PKDKEIIVYCAVGLRGYIAARILTQNGF-KVKNLDGGYK 86 (90)
T ss_pred CCCCcEEEEcCCChhHHHHHHHHHHCCC-CEEEecCCHH
Confidence 4568999999998888899999999996 9999999874
|
Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain. |
| >TIGR01389 recQ ATP-dependent DNA helicase RecQ | Back alignment and domain information |
|---|
Probab=92.17 E-value=1.3 Score=39.35 Aligned_cols=62 Identities=11% Similarity=0.081 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcc
Q 031433 9 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHT 75 (159)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~ 75 (159)
..++.++-.+.. ...++|.++++.-++.-.+.|+..| +.+..+|++++..++..+++....+
T Consensus 41 KTl~y~lpal~~----~g~~lVisPl~sL~~dq~~~l~~~g-i~~~~~~s~~~~~~~~~~~~~l~~~ 102 (591)
T TIGR01389 41 KSLCYQVPALLL----KGLTVVISPLISLMKDQVDQLRAAG-VAAAYLNSTLSAKEQQDIEKALVNG 102 (591)
T ss_pred HhHHHHHHHHHc----CCcEEEEcCCHHHHHHHHHHHHHcC-CcEEEEeCCCCHHHHHHHHHHHhCC
Confidence 344444444432 4578999999999998889999987 7999999999999999999999887
|
The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ. |
| >cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2 | Back alignment and domain information |
|---|
Probab=92.14 E-value=0.64 Score=31.21 Aligned_cols=52 Identities=12% Similarity=0.107 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCC
Q 031433 9 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 61 (159)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~ 61 (159)
+.+.+.+..+.. ..+.++++++|++-..+...+..|.+.|+-++..+.|++.
T Consensus 43 ~~~~~~~~~~~~-~~~~~~vv~~c~~g~rs~~~~~~l~~~G~~~v~~l~GG~~ 94 (101)
T cd01528 43 SEIPERSKELDS-DNPDKDIVVLCHHGGRSMQVAQWLLRQGFENVYNLQGGID 94 (101)
T ss_pred HHHHHHHHHhcc-cCCCCeEEEEeCCCchHHHHHHHHHHcCCccEEEecCCHH
Confidence 344444444332 2346899999999888888999999988546888888864
|
Subgroup 2 includes uncharacterized putative rhodanese-related domains. |
| >TIGR01054 rgy reverse gyrase | Back alignment and domain information |
|---|
Probab=91.99 E-value=0.47 Score=45.86 Aligned_cols=62 Identities=18% Similarity=0.273 Sum_probs=51.0
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcCC---Ccc---EEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCC
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSNLA---DIS---FSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDE 97 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~~~---~i~---~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (159)
.+.+++|.++|+.-+..+++.++... ++. +..+||+++..++...++.+.++
T Consensus 120 ~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~---------------------- 177 (1171)
T TIGR01054 120 KGKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENG---------------------- 177 (1171)
T ss_pred cCCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcC----------------------
Confidence 36899999999999999988887642 123 33589999999999999999887
Q ss_pred CceeEEEEecC
Q 031433 98 HKSHMIVVTDA 108 (159)
Q Consensus 98 ~~~~vLV~Td~ 108 (159)
..+|+|+|+-
T Consensus 178 -~~dIlV~Tp~ 187 (1171)
T TIGR01054 178 -DFDILITTTM 187 (1171)
T ss_pred -CCCEEEECHH
Confidence 6889999986
|
Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA. |
| >KOG2340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.88 E-value=1.6 Score=38.92 Aligned_cols=94 Identities=13% Similarity=0.149 Sum_probs=73.0
Q ss_pred CCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEEE
Q 031433 25 GLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIV 104 (159)
Q Consensus 25 ~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLV 104 (159)
...++|+.++--.--.+-+++.+.. +....+|.=-++..-.++-+-|.+| ...+|+
T Consensus 552 ~s~~LiyIPSYfDFVRvRNy~K~e~-i~F~~i~EYssk~~vsRAR~lF~qg-----------------------r~~vlL 607 (698)
T KOG2340|consen 552 ESGILIYIPSYFDFVRVRNYMKKEE-ISFVMINEYSSKSKVSRARELFFQG-----------------------RKSVLL 607 (698)
T ss_pred cCceEEEecchhhHHHHHHHhhhhh-cchHHHhhhhhHhhhhHHHHHHHhc-----------------------CceEEE
Confidence 4678999999888888999998886 6777776544455555566778888 789999
Q ss_pred EecCCCCCCcCCCCCCCCCeEEEccCCCChhHH---Hhhhhcc
Q 031433 105 VTDACLPLLSSGESAISARVLINYELPTKKETY---IRRMTTC 144 (159)
Q Consensus 105 ~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~y---i~R~GR~ 144 (159)
-|+- .-.=|--++.+|+.||.|.+|.+|.-| +..++|+
T Consensus 608 yTER--~hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~ 648 (698)
T KOG2340|consen 608 YTER--AHFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKT 648 (698)
T ss_pred Eehh--hhhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhh
Confidence 9986 112466889999999999999998766 5677777
|
|
| >PRK11192 ATP-dependent RNA helicase SrmB; Provisional | Back alignment and domain information |
|---|
Probab=91.60 E-value=1.2 Score=37.81 Aligned_cols=78 Identities=13% Similarity=0.191 Sum_probs=53.6
Q ss_pred CCcEEEEeCchHHHHHHHHHHhcC---CCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCcee
Q 031433 25 GLPMIVCCSSRDELDAVCSAVSNL---ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSH 101 (159)
Q Consensus 25 ~~k~iIF~ns~~~~~~l~~~L~~~---~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (159)
..++||.++|++-+..+.+.++.. ..+.+..++|+.+...+...+ .. ..+
T Consensus 73 ~~~~lil~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l---~~------------------------~~~ 125 (434)
T PRK11192 73 PPRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVF---SE------------------------NQD 125 (434)
T ss_pred CceEEEECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHh---cC------------------------CCC
Confidence 468999999999988877665542 237999999999887655433 22 478
Q ss_pred EEEEecCCC--CCCcCCCCCCCCCeEEEcc
Q 031433 102 MIVVTDACL--PLLSSGESAISARVLINYE 129 (159)
Q Consensus 102 vLV~Td~~~--~~~~rGid~~~v~~VI~~d 129 (159)
|+|+|+-.+ -+....+++.++++||.=+
T Consensus 126 IlV~Tp~rl~~~~~~~~~~~~~v~~lViDE 155 (434)
T PRK11192 126 IVVATPGRLLQYIKEENFDCRAVETLILDE 155 (434)
T ss_pred EEEEChHHHHHHHHcCCcCcccCCEEEEEC
Confidence 999996210 0023456788888877544
|
|
| >PRK04537 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=91.33 E-value=1.3 Score=39.63 Aligned_cols=76 Identities=9% Similarity=0.135 Sum_probs=52.3
Q ss_pred CCcEEEEeCchHHHHHHHHHHhcCC---CccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCcee
Q 031433 25 GLPMIVCCSSRDELDAVCSAVSNLA---DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSH 101 (159)
Q Consensus 25 ~~k~iIF~ns~~~~~~l~~~L~~~~---~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (159)
..++||.++|++-+..+.+.+...+ .+.+..+||+.+.+.+...++ . ..+
T Consensus 84 ~~raLIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~----~-----------------------~~d 136 (572)
T PRK04537 84 DPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQ----Q-----------------------GVD 136 (572)
T ss_pred CceEEEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHh----C-----------------------CCC
Confidence 3689999999999998888776541 268999999998776554432 2 478
Q ss_pred EEEEecCCCC-CCcC--CCCCCCCCeEEE
Q 031433 102 MIVVTDACLP-LLSS--GESAISARVLIN 127 (159)
Q Consensus 102 vLV~Td~~~~-~~~r--Gid~~~v~~VI~ 127 (159)
|+|+|.-.+- ++.+ .+++..++++|.
T Consensus 137 IiV~TP~rL~~~l~~~~~~~l~~v~~lVi 165 (572)
T PRK04537 137 VIIATPGRLIDYVKQHKVVSLHACEICVL 165 (572)
T ss_pred EEEECHHHHHHHHHhccccchhheeeeEe
Confidence 9999952100 0222 366777777664
|
|
| >cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein | Back alignment and domain information |
|---|
Probab=91.16 E-value=0.46 Score=30.42 Aligned_cols=40 Identities=13% Similarity=0.254 Sum_probs=34.1
Q ss_pred CCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCC
Q 031433 22 RRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 61 (159)
Q Consensus 22 ~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~ 61 (159)
..+..++|++|++...+..++..|+..|+.++..+-|++.
T Consensus 47 ~~~~~~vv~~c~~~~~a~~~~~~l~~~G~~~v~~l~gG~~ 86 (89)
T cd00158 47 LDKDKPIVVYCRSGNRSARAAKLLRKAGGTNVYNLEGGML 86 (89)
T ss_pred cCCCCeEEEEeCCCchHHHHHHHHHHhCcccEEEecCChh
Confidence 4567999999999889999999999998667888888764
|
The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins. |
| >cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily | Back alignment and domain information |
|---|
Probab=91.12 E-value=0.56 Score=31.20 Aligned_cols=40 Identities=8% Similarity=0.071 Sum_probs=33.2
Q ss_pred CCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCC
Q 031433 22 RRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 61 (159)
Q Consensus 22 ~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~ 61 (159)
..+++++|++|++.......+..|...|+-++..+.|++.
T Consensus 53 ~~~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~l~GG~~ 92 (96)
T cd01529 53 PGRATRYVLTCDGSLLARFAAQELLALGGKPVALLDGGTS 92 (96)
T ss_pred CCCCCCEEEEeCChHHHHHHHHHHHHcCCCCEEEeCCCHH
Confidence 3567899999999888889999998888546888888873
|
This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats. |
| >PRK10590 ATP-dependent RNA helicase RhlE; Provisional | Back alignment and domain information |
|---|
Probab=91.11 E-value=2 Score=37.06 Aligned_cols=76 Identities=11% Similarity=0.134 Sum_probs=52.8
Q ss_pred CcEEEEeCchHHHHHHHHHHhcC---CCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeE
Q 031433 26 LPMIVCCSSRDELDAVCSAVSNL---ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHM 102 (159)
Q Consensus 26 ~k~iIF~ns~~~~~~l~~~L~~~---~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 102 (159)
.++||.|+|++-+..+.+.++.. -.+.+..++|+.+.+.... .+.. ..+|
T Consensus 76 ~~aLil~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~---~l~~------------------------~~~I 128 (456)
T PRK10590 76 VRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM---KLRG------------------------GVDV 128 (456)
T ss_pred ceEEEEeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHH---HHcC------------------------CCcE
Confidence 47999999999999888877753 1268888999988766432 2333 5789
Q ss_pred EEEecCCCC--CCcCCCCCCCCCeEEEc
Q 031433 103 IVVTDACLP--LLSSGESAISARVLINY 128 (159)
Q Consensus 103 LV~Td~~~~--~~~rGid~~~v~~VI~~ 128 (159)
+|+|.-.+- +....+++..++++|.=
T Consensus 129 iV~TP~rL~~~~~~~~~~l~~v~~lViD 156 (456)
T PRK10590 129 LVATPGRLLDLEHQNAVKLDQVEILVLD 156 (456)
T ss_pred EEEChHHHHHHHHcCCcccccceEEEee
Confidence 999962100 02445678888887753
|
|
| >cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain | Back alignment and domain information |
|---|
Probab=91.07 E-value=0.78 Score=31.49 Aligned_cols=38 Identities=21% Similarity=0.228 Sum_probs=31.4
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCC
Q 031433 23 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDL 60 (159)
Q Consensus 23 ~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~ 60 (159)
.+.+++|+||++-..+..++..|+..|+-++..+.|++
T Consensus 76 ~~~~~iv~yc~~g~~s~~~~~~l~~~G~~~v~~l~GG~ 113 (118)
T cd01449 76 TPDKPVIVYCGSGVTACVLLLALELLGYKNVRLYDGSW 113 (118)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHHHcCCCCeeeeCChH
Confidence 35789999999988888999999999853577778876
|
TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue. |
| >PRK04837 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=90.33 E-value=2.6 Score=35.83 Aligned_cols=78 Identities=8% Similarity=0.057 Sum_probs=52.7
Q ss_pred CCcEEEEeCchHHHHHHHHHHhcC---CCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCcee
Q 031433 25 GLPMIVCCSSRDELDAVCSAVSNL---ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSH 101 (159)
Q Consensus 25 ~~k~iIF~ns~~~~~~l~~~L~~~---~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (159)
+.++||.++|++-+..+.+.+... -++.+..++|+.+.+..... +.. ..+
T Consensus 83 ~~~~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~---l~~------------------------~~~ 135 (423)
T PRK04837 83 QPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKV---LES------------------------GVD 135 (423)
T ss_pred CceEEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHH---hcC------------------------CCC
Confidence 468999999999999887655432 23788999998876654433 333 478
Q ss_pred EEEEecCCCC-CC-cCCCCCCCCCeEEEcc
Q 031433 102 MIVVTDACLP-LL-SSGESAISARVLINYE 129 (159)
Q Consensus 102 vLV~Td~~~~-~~-~rGid~~~v~~VI~~d 129 (159)
|+|+|.-.+- ++ ...+++..+.++|.-+
T Consensus 136 IlV~TP~~l~~~l~~~~~~l~~v~~lViDE 165 (423)
T PRK04837 136 ILIGTTGRLIDYAKQNHINLGAIQVVVLDE 165 (423)
T ss_pred EEEECHHHHHHHHHcCCcccccccEEEEec
Confidence 9999973110 01 2357788888887544
|
|
| >cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily | Back alignment and domain information |
|---|
Probab=90.26 E-value=0.97 Score=30.29 Aligned_cols=39 Identities=8% Similarity=0.139 Sum_probs=31.6
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCC
Q 031433 23 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 61 (159)
Q Consensus 23 ~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~ 61 (159)
.++++++|+|++-......+..|...|+-++..|.|++.
T Consensus 59 ~~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~ 97 (101)
T cd01518 59 LKGKKVLMYCTGGIRCEKASAYLKERGFKNVYQLKGGIL 97 (101)
T ss_pred cCCCEEEEECCCchhHHHHHHHHHHhCCcceeeechhHH
Confidence 456899999999877888888999888535788888764
|
This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins. |
| >KOG0347 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=90.21 E-value=0.83 Score=40.84 Aligned_cols=44 Identities=18% Similarity=0.312 Sum_probs=39.1
Q ss_pred EEEEeCchHHHHHHHHHHhcC---CCccEEEeecCCCHHHHHHHHHH
Q 031433 28 MIVCCSSRDELDAVCSAVSNL---ADISFSSLHSDLAETERTLILEE 71 (159)
Q Consensus 28 ~iIF~ns~~~~~~l~~~L~~~---~~i~~~~l~~~~~~~~R~~~l~~ 71 (159)
.|||++|++-+-.+.+.|... ..+.+..|.|+|+....+++|++
T Consensus 266 ~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~ 312 (731)
T KOG0347|consen 266 ALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQ 312 (731)
T ss_pred eEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhc
Confidence 899999999999999988764 34899999999999998888876
|
|
| >cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily | Back alignment and domain information |
|---|
Probab=89.88 E-value=0.82 Score=30.04 Aligned_cols=38 Identities=16% Similarity=0.265 Sum_probs=32.6
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCC
Q 031433 23 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDL 60 (159)
Q Consensus 23 ~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~ 60 (159)
.++++++|+|++-..+...+..|...|+-++..+.|++
T Consensus 54 ~~~~~ivv~c~~g~~s~~a~~~l~~~G~~~v~~l~gG~ 91 (96)
T cd01444 54 DRDRPVVVYCYHGNSSAQLAQALREAGFTDVRSLAGGF 91 (96)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHcCCceEEEcCCCH
Confidence 45789999999999999999999999865677888876
|
Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine. |
| >smart00450 RHOD Rhodanese Homology Domain | Back alignment and domain information |
|---|
Probab=89.74 E-value=0.58 Score=30.31 Aligned_cols=40 Identities=15% Similarity=0.172 Sum_probs=33.9
Q ss_pred CCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCC
Q 031433 22 RRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 61 (159)
Q Consensus 22 ~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~ 61 (159)
..+.+++||||++...+..++..|...|+-.+..|.|++.
T Consensus 53 ~~~~~~iv~~c~~g~~a~~~~~~l~~~G~~~v~~l~GG~~ 92 (100)
T smart00450 53 LDKDKPVVVYCRSGNRSAKAAWLLRELGFKNVYLLDGGYK 92 (100)
T ss_pred CCCCCeEEEEeCCCcHHHHHHHHHHHcCCCceEEecCCHH
Confidence 4567899999999999999999999998545888888874
|
An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions. |
| >cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily | Back alignment and domain information |
|---|
Probab=89.63 E-value=0.7 Score=30.78 Aligned_cols=40 Identities=13% Similarity=0.084 Sum_probs=32.6
Q ss_pred CCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCC
Q 031433 22 RRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 61 (159)
Q Consensus 22 ~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~ 61 (159)
...+++++++|++-..+...+..|.+.|+-.+..+.|++.
T Consensus 51 ~~~~~~iv~~c~~g~~s~~~~~~L~~~g~~~v~~l~gG~~ 90 (99)
T cd01527 51 LVGANAIIFHCRSGMRTQQNAERLAAISAGEAYVLEGGLD 90 (99)
T ss_pred CCCCCcEEEEeCCCchHHHHHHHHHHcCCccEEEeeCCHH
Confidence 3456899999999888889999999887546788999863
|
This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases. |
| >cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain | Back alignment and domain information |
|---|
Probab=89.44 E-value=1.2 Score=30.84 Aligned_cols=51 Identities=14% Similarity=0.053 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEeCc-hHHHHHHHHHHhcCCCccEEEeecCCC
Q 031433 9 ETLVELLHLVVAGRRPGLPMIVCCSS-RDELDAVCSAVSNLADISFSSLHSDLA 61 (159)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~k~iIF~ns-~~~~~~l~~~L~~~~~i~~~~l~~~~~ 61 (159)
+.+.+.+..+ . ..+.+++++||++ -..+...+..|+..|+-++..+.|++.
T Consensus 65 ~~~~~~~~~~-~-~~~~~~vv~~c~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~ 116 (122)
T cd01448 65 EEFAELLGSL-G-ISNDDTVVVYDDGGGFFAARAWWTLRYFGHENVRVLDGGLQ 116 (122)
T ss_pred HHHHHHHHHc-C-CCCCCEEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHH
Confidence 4455555432 1 4457899999999 578888889999988545888888873
|
TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction. |
| >PRK13766 Hef nuclease; Provisional | Back alignment and domain information |
|---|
Probab=89.20 E-value=2.5 Score=38.80 Aligned_cols=79 Identities=16% Similarity=0.271 Sum_probs=53.4
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhcCCCc---cEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCc
Q 031433 23 RPGLPMIVCCSSRDELDAVCSAVSNLADI---SFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHK 99 (159)
Q Consensus 23 ~~~~k~iIF~ns~~~~~~l~~~L~~~~~i---~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (159)
.++.++||.|+++.-++...+.+++...+ .+..++|+.+..+|.+.++ +
T Consensus 56 ~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~r~~~~~----------------------------~ 107 (773)
T PRK13766 56 KKGGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIVVFTGEVSPEKRAELWE----------------------------K 107 (773)
T ss_pred hCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEEEEeCCCCHHHHHHHHh----------------------------C
Confidence 35689999999999998877777764223 7888999999888764432 3
Q ss_pred eeEEEEecCCC--CCCcCCCCCCCCCeEEEcc
Q 031433 100 SHMIVVTDACL--PLLSSGESAISARVLINYE 129 (159)
Q Consensus 100 ~~vLV~Td~~~--~~~~rGid~~~v~~VI~~d 129 (159)
..|+|+|.-.+ -++..-+++.++++||.-+
T Consensus 108 ~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDE 139 (773)
T PRK13766 108 AKVIVATPQVIENDLIAGRISLEDVSLLIFDE 139 (773)
T ss_pred CCEEEECHHHHHHHHHcCCCChhhCcEEEEEC
Confidence 56888885200 0023446677778777443
|
|
| >cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily | Back alignment and domain information |
|---|
Probab=89.05 E-value=0.91 Score=30.32 Aligned_cols=38 Identities=11% Similarity=0.152 Sum_probs=32.4
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCC
Q 031433 23 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 61 (159)
Q Consensus 23 ~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~ 61 (159)
.++++++|+|.+-......+..|+..|+ .+..+.|++.
T Consensus 59 ~~~~~ivv~C~~G~rs~~aa~~L~~~G~-~~~~l~GG~~ 96 (100)
T cd01523 59 PDDQEVTVICAKEGSSQFVAELLAERGY-DVDYLAGGMK 96 (100)
T ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHcCc-eeEEeCCcHH
Confidence 4568999999998888999999999984 7888888874
|
This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain. |
| >PRK11057 ATP-dependent DNA helicase RecQ; Provisional | Back alignment and domain information |
|---|
Probab=88.84 E-value=3.8 Score=36.77 Aligned_cols=50 Identities=8% Similarity=0.055 Sum_probs=44.9
Q ss_pred CCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcc
Q 031433 25 GLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHT 75 (159)
Q Consensus 25 ~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~ 75 (159)
...+||.+++++-+....+.|+..| +.+..+++..+.+++..+++....+
T Consensus 65 ~g~tlVisPl~sL~~dqv~~l~~~g-i~~~~~~s~~~~~~~~~~~~~~~~g 114 (607)
T PRK11057 65 DGLTLVVSPLISLMKDQVDQLLANG-VAAACLNSTQTREQQLEVMAGCRTG 114 (607)
T ss_pred CCCEEEEecHHHHHHHHHHHHHHcC-CcEEEEcCCCCHHHHHHHHHHHhCC
Confidence 3578999999999999999999987 7999999999999999888888887
|
|
| >PRK01297 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=88.77 E-value=4.4 Score=35.00 Aligned_cols=77 Identities=8% Similarity=0.132 Sum_probs=52.6
Q ss_pred CCcEEEEeCchHHHHHHHHHHhcC---CCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCcee
Q 031433 25 GLPMIVCCSSRDELDAVCSAVSNL---ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSH 101 (159)
Q Consensus 25 ~~k~iIF~ns~~~~~~l~~~L~~~---~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (159)
..++||.++|++-+..+.+.++.. -++.+..++|+.+..... +.+... ..+
T Consensus 162 ~~~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~---~~~~~~-----------------------~~~ 215 (475)
T PRK01297 162 EPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQL---KQLEAR-----------------------FCD 215 (475)
T ss_pred CceEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHH---HHHhCC-----------------------CCC
Confidence 368999999999999888877654 126888999988765433 344444 688
Q ss_pred EEEEecCCC-CCCc-CCCCCCCCCeEEE
Q 031433 102 MIVVTDACL-PLLS-SGESAISARVLIN 127 (159)
Q Consensus 102 vLV~Td~~~-~~~~-rGid~~~v~~VI~ 127 (159)
|+|+|.-.+ ++.. ..+.+..+++||.
T Consensus 216 Iiv~TP~~Ll~~~~~~~~~l~~l~~lVi 243 (475)
T PRK01297 216 ILVATPGRLLDFNQRGEVHLDMVEVMVL 243 (475)
T ss_pred EEEECHHHHHHHHHcCCcccccCceEEe
Confidence 999997421 1122 2456777887774
|
|
| >cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily | Back alignment and domain information |
|---|
Probab=88.24 E-value=1.5 Score=30.97 Aligned_cols=39 Identities=8% Similarity=0.146 Sum_probs=31.4
Q ss_pred CCCCCcEEEEeC-chHHHHHHHHHHhcCCCccEEEeecCCC
Q 031433 22 RRPGLPMIVCCS-SRDELDAVCSAVSNLADISFSSLHSDLA 61 (159)
Q Consensus 22 ~~~~~k~iIF~n-s~~~~~~l~~~L~~~~~i~~~~l~~~~~ 61 (159)
..+.++++|||+ +-..+...+..|+..|+ ++..|.|++.
T Consensus 83 i~~~~~vvvyC~~~G~rs~~a~~~L~~~G~-~v~~L~GG~~ 122 (128)
T cd01520 83 LERDPKLLIYCARGGMRSQSLAWLLESLGI-DVPLLEGGYK 122 (128)
T ss_pred cCCCCeEEEEeCCCCccHHHHHHHHHHcCC-ceeEeCCcHH
Confidence 456789999997 45667788888888885 8999999874
|
This CD includes several putative ATP /GTP binding proteins including E. coli YbbB. |
| >PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional | Back alignment and domain information |
|---|
Probab=88.18 E-value=4.3 Score=39.34 Aligned_cols=72 Identities=18% Similarity=0.169 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhc--cccccccccccc
Q 031433 9 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRH--TAMKWNQKVTEQ 86 (159)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~--~~~~~~~~~~~~ 86 (159)
..++.+|-.+.. +..+||.+++++-+..-...|...+ +.+..+.++++..++.++++++.. +
T Consensus 488 KSLcYQLPAL~~----~GiTLVISPLiSLmqDQV~~L~~~G-I~Aa~L~s~~s~~eq~~ilr~l~s~~g----------- 551 (1195)
T PLN03137 488 KSLTYQLPALIC----PGITLVISPLVSLIQDQIMNLLQAN-IPAASLSAGMEWAEQLEILQELSSEYS----------- 551 (1195)
T ss_pred HHHHHHHHHHHc----CCcEEEEeCHHHHHHHHHHHHHhCC-CeEEEEECCCCHHHHHHHHHHHHhcCC-----------
Confidence 344444443432 3679999999999886667777777 899999999999999999998876 5
Q ss_pred CCCCCCCCCCCCceeEEEEecC
Q 031433 87 SGDESETGKDEHKSHMIVVTDA 108 (159)
Q Consensus 87 ~~~~~~~~~~~~~~~vLV~Td~ 108 (159)
.+++|++|+-
T Consensus 552 ------------~~~ILyvTPE 561 (1195)
T PLN03137 552 ------------KYKLLYVTPE 561 (1195)
T ss_pred ------------CCCEEEEChH
Confidence 7899999985
|
|
| >cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1 | Back alignment and domain information |
|---|
Probab=88.13 E-value=0.94 Score=30.00 Aligned_cols=38 Identities=18% Similarity=0.234 Sum_probs=30.2
Q ss_pred CCCcEEEEeCc--hHHHHHHHHHHhcCCCccEEEeecCCC
Q 031433 24 PGLPMIVCCSS--RDELDAVCSAVSNLADISFSSLHSDLA 61 (159)
Q Consensus 24 ~~~k~iIF~ns--~~~~~~l~~~L~~~~~i~~~~l~~~~~ 61 (159)
+.++++|+|.+ +..+...+..|...|+-++..+.|++.
T Consensus 49 ~~~~ivl~c~~G~~~~s~~aa~~L~~~G~~~v~~l~GG~~ 88 (92)
T cd01532 49 RDTPIVVYGEGGGEDLAPRAARRLSELGYTDVALLEGGLQ 88 (92)
T ss_pred CCCeEEEEeCCCCchHHHHHHHHHHHcCccCEEEccCCHH
Confidence 46799999999 444678888998888657888888874
|
This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue. |
| >PTZ00110 helicase; Provisional | Back alignment and domain information |
|---|
Probab=87.70 E-value=3 Score=36.94 Aligned_cols=77 Identities=12% Similarity=0.192 Sum_probs=52.5
Q ss_pred CCcEEEEeCchHHHHHHHHHHhcCC---CccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCcee
Q 031433 25 GLPMIVCCSSRDELDAVCSAVSNLA---DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSH 101 (159)
Q Consensus 25 ~~k~iIF~ns~~~~~~l~~~L~~~~---~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (159)
+..+||.|+|++-+..+.+.+...+ .+.+..++|+.+...... ..++ ..+
T Consensus 203 gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~---~l~~------------------------~~~ 255 (545)
T PTZ00110 203 GPIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIY---ALRR------------------------GVE 255 (545)
T ss_pred CcEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHH---HHHc------------------------CCC
Confidence 4679999999999998888877642 267888999887665433 3344 378
Q ss_pred EEEEecCCC-CCCcCC-CCCCCCCeEEEc
Q 031433 102 MIVVTDACL-PLLSSG-ESAISARVLINY 128 (159)
Q Consensus 102 vLV~Td~~~-~~~~rG-id~~~v~~VI~~ 128 (159)
|+|+|+-.+ -++.++ +++..+++||.=
T Consensus 256 IlVaTPgrL~d~l~~~~~~l~~v~~lViD 284 (545)
T PTZ00110 256 ILIACPGRLIDFLESNVTNLRRVTYLVLD 284 (545)
T ss_pred EEEECHHHHHHHHHcCCCChhhCcEEEee
Confidence 999995210 003333 667788877743
|
|
| >PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases | Back alignment and domain information |
|---|
Probab=87.29 E-value=7.3 Score=27.87 Aligned_cols=94 Identities=10% Similarity=0.144 Sum_probs=59.2
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcCC---CccEEEeecCCCHH-HHHHHHHHHhcccccccccccccCCCCCCCCCCCCc
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSNLA---DISFSSLHSDLAET-ERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHK 99 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~~~---~i~~~~l~~~~~~~-~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (159)
...++||.|++++.++...+.+.+.. .+.+..+|++.+.. +....+ .+ .
T Consensus 43 ~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-----------------------~ 95 (169)
T PF00270_consen 43 KDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHGGQSISEDQREVL----SN-----------------------Q 95 (169)
T ss_dssp SSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEESTTSCHHHHHHHHH----HT-----------------------T
T ss_pred CCceEEEEeecccccccccccccccccccccccccccccccccccccccc----cc-----------------------c
Confidence 44699999999999999988887753 25789999988854 222222 33 5
Q ss_pred eeEEEEecCCCCCC--cCCCCCCCCCeEEEccC----CCChhHHHhhhhcc
Q 031433 100 SHMIVVTDACLPLL--SSGESAISARVLINYEL----PTKKETYIRRMTTC 144 (159)
Q Consensus 100 ~~vLV~Td~~~~~~--~rGid~~~v~~VI~~d~----P~~~~~yi~R~GR~ 144 (159)
..|+|+|...+-.. ...+++..+++||.=+. .++....+..+.+.
T Consensus 96 ~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~ 146 (169)
T PF00270_consen 96 ADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRR 146 (169)
T ss_dssp SSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHH
T ss_pred ccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHH
Confidence 88999997521111 22356777888775331 22334444554444
|
Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A .... |
| >cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily | Back alignment and domain information |
|---|
Probab=87.28 E-value=0.9 Score=30.49 Aligned_cols=39 Identities=10% Similarity=0.111 Sum_probs=31.8
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCC
Q 031433 23 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 61 (159)
Q Consensus 23 ~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~ 61 (159)
.+.+++++||++-..+...+..|...|+-++..+.|++.
T Consensus 64 ~~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~~~Gg~~ 102 (106)
T cd01519 64 SKDKELIFYCKAGVRSKAAAELARSLGYENVGNYPGSWL 102 (106)
T ss_pred CCCCeEEEECCCcHHHHHHHHHHHHcCCccceecCCcHH
Confidence 346899999999888889999999998545777778763
|
This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized. |
| >KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=87.28 E-value=4.1 Score=35.06 Aligned_cols=89 Identities=15% Similarity=0.152 Sum_probs=61.3
Q ss_pred HHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCC---CccEEEeecCCCHHHHHHHHHHHhccccccccccccc
Q 031433 10 TLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLA---DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQ 86 (159)
Q Consensus 10 ~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~---~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~ 86 (159)
.++-+++.|+. ++....++|.++|++-+..+++.+...| ++.+..+-|+|+..... +.-++
T Consensus 115 faLPIl~~LL~-~p~~~~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~--~~L~k------------- 178 (476)
T KOG0330|consen 115 FALPILQRLLQ-EPKLFFALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQA--NQLSK------------- 178 (476)
T ss_pred hHHHHHHHHHc-CCCCceEEEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHH--HHhhc-------------
Confidence 34567777776 6666899999999999998888877652 27899999999865432 33333
Q ss_pred CCCCCCCCCCCCceeEEEEecCCCCC--C-cCCCCCCCCCeEE
Q 031433 87 SGDESETGKDEHKSHMIVVTDACLPL--L-SSGESAISARVLI 126 (159)
Q Consensus 87 ~~~~~~~~~~~~~~~vLV~Td~~~~~--~-~rGid~~~v~~VI 126 (159)
+++|||||+-++-- - .+|.....+++.|
T Consensus 179 ------------kPhilVaTPGrL~dhl~~Tkgf~le~lk~LV 209 (476)
T KOG0330|consen 179 ------------KPHILVATPGRLWDHLENTKGFSLEQLKFLV 209 (476)
T ss_pred ------------CCCEEEeCcHHHHHHHHhccCccHHHhHHHh
Confidence 47889999741000 0 4577766666654
|
|
| >cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2 | Back alignment and domain information |
|---|
Probab=87.22 E-value=2.5 Score=28.69 Aligned_cols=38 Identities=18% Similarity=0.298 Sum_probs=30.8
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcCCCcc-EEEeecCCC
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSNLADIS-FSSLHSDLA 61 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~~~~i~-~~~l~~~~~ 61 (159)
++++++|||++-......+..|+..|+-+ +..+.|++.
T Consensus 65 ~~~~ivv~C~~G~rs~~a~~~L~~~G~~~~v~~l~gG~~ 103 (109)
T cd01533 65 PRTPIVVNCAGRTRSIIGAQSLINAGLPNPVAALRNGTQ 103 (109)
T ss_pred CCCeEEEECCCCchHHHHHHHHHHCCCCcceeEecCCHH
Confidence 45789999999877777889999998434 788999874
|
This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue. |
| >COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=87.09 E-value=3.7 Score=39.56 Aligned_cols=79 Identities=16% Similarity=0.132 Sum_probs=66.6
Q ss_pred CCCCCcEEEEeCchHHHHHHHHHHh----cCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCC
Q 031433 22 RRPGLPMIVCCSSRDELDAVCSAVS----NLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDE 97 (159)
Q Consensus 22 ~~~~~k~iIF~ns~~~~~~l~~~L~----~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (159)
-..++++.|.|+|-=-++.=++.++ ..+ +++..|..-.+.++...++++..+|
T Consensus 640 V~~GKQVAvLVPTTlLA~QHy~tFkeRF~~fP-V~I~~LSRF~s~kE~~~il~~la~G---------------------- 696 (1139)
T COG1197 640 VMDGKQVAVLVPTTLLAQQHYETFKERFAGFP-VRIEVLSRFRSAKEQKEILKGLAEG---------------------- 696 (1139)
T ss_pred hcCCCeEEEEcccHHhHHHHHHHHHHHhcCCC-eeEEEecccCCHHHHHHHHHHHhcC----------------------
Confidence 4457999999999766665555554 446 8999999999999999999999999
Q ss_pred CceeEEEEecCCCCCCcCCCCCCCCCeEEE
Q 031433 98 HKSHMIVVTDACLPLLSSGESAISARVLIN 127 (159)
Q Consensus 98 ~~~~vLV~Td~~~~~~~rGid~~~v~~VI~ 127 (159)
++.|+|-|-- |++.++-+.+.-++|-
T Consensus 697 -~vDIvIGTHr---LL~kdv~FkdLGLlII 722 (1139)
T COG1197 697 -KVDIVIGTHR---LLSKDVKFKDLGLLII 722 (1139)
T ss_pred -CccEEEechH---hhCCCcEEecCCeEEE
Confidence 9999999986 5888899999998873
|
|
| >KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=86.97 E-value=2.9 Score=37.00 Aligned_cols=97 Identities=11% Similarity=0.151 Sum_probs=67.3
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhcCC---CccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCc
Q 031433 23 RPGLPMIVCCSSRDELDAVCSAVSNLA---DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHK 99 (159)
Q Consensus 23 ~~~~k~iIF~ns~~~~~~l~~~L~~~~---~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (159)
.....+||-++|++-+..+.+...+.+ .+.+.+++|+.+..... ++.++|
T Consensus 163 ~~~P~vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~---~~l~~g------------------------ 215 (519)
T KOG0331|consen 163 GDGPIVLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQL---RDLERG------------------------ 215 (519)
T ss_pred CCCCeEEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHH---HHHhcC------------------------
Confidence 335779999999999999988887752 25699999999877654 444554
Q ss_pred eeEEEEecCCC-CCCcCC-CCCCCCCeEEEcc--------CCCChhHHHhhhhcccC
Q 031433 100 SHMIVVTDACL-PLLSSG-ESAISARVLINYE--------LPTKKETYIRRMTTCLA 146 (159)
Q Consensus 100 ~~vLV~Td~~~-~~~~rG-id~~~v~~VI~~d--------~P~~~~~yi~R~GR~~~ 146 (159)
+.|+|+|+-++ -++.+| +|+..+.++|.=+ +=..+...+++++|+-+
T Consensus 216 vdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADrMldmGFe~qI~~Il~~i~~~~r 272 (519)
T KOG0331|consen 216 VDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRMLDMGFEPQIRKILSQIPRPDR 272 (519)
T ss_pred CcEEEeCChHHHHHHHcCCccccceeEEEeccHHhhhccccHHHHHHHHHhcCCCcc
Confidence 88999996310 003445 7888888887422 33456667777776644
|
|
| >cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1 | Back alignment and domain information |
|---|
Probab=86.93 E-value=1.7 Score=30.21 Aligned_cols=39 Identities=13% Similarity=0.187 Sum_probs=32.5
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCC
Q 031433 23 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 61 (159)
Q Consensus 23 ~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~ 61 (159)
.+.+++|++|++-..+...+..|+..|+-++..+.|++.
T Consensus 62 ~~~~~ivv~C~~G~rs~~aa~~L~~~G~~~v~~l~gG~~ 100 (117)
T cd01522 62 GKDRPVLLLCRSGNRSIAAAEAAAQAGFTNVYNVLEGFE 100 (117)
T ss_pred CCCCeEEEEcCCCccHHHHHHHHHHCCCCeEEECcCcee
Confidence 456889999999888889999999998656777888875
|
This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins. |
| >cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily | Back alignment and domain information |
|---|
Probab=86.41 E-value=0.93 Score=31.67 Aligned_cols=39 Identities=13% Similarity=0.233 Sum_probs=32.9
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhcCCC-ccEEEeecCCC
Q 031433 23 RPGLPMIVCCSSRDELDAVCSAVSNLAD-ISFSSLHSDLA 61 (159)
Q Consensus 23 ~~~~k~iIF~ns~~~~~~l~~~L~~~~~-i~~~~l~~~~~ 61 (159)
.+.++++++|++-..+...+..|+..|+ -++..+.|++.
T Consensus 70 ~~~~~ivv~C~~G~rs~~aa~~L~~~G~~~~v~~l~GG~~ 109 (122)
T cd01526 70 DKDSPIYVVCRRGNDSQTAVRKLKELGLERFVRDIIGGLK 109 (122)
T ss_pred CCCCcEEEECCCCCcHHHHHHHHHHcCCccceeeecchHH
Confidence 4568999999998888899999999984 36889999873
|
This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains. |
| >KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=85.91 E-value=4.3 Score=36.23 Aligned_cols=75 Identities=11% Similarity=0.124 Sum_probs=51.7
Q ss_pred CCcEEEEeCchHHHHHHH---HHHhc-CCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCce
Q 031433 25 GLPMIVCCSSRDELDAVC---SAVSN-LADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKS 100 (159)
Q Consensus 25 ~~k~iIF~ns~~~~~~l~---~~L~~-~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (159)
+.=.+|.|+|++-+..+. +.|.+ +| +.++++||+++..+....|+ .| .
T Consensus 296 gPi~vilvPTrela~Qi~~eaKkf~K~yg-l~~v~~ygGgsk~eQ~k~Lk---~g------------------------~ 347 (731)
T KOG0339|consen 296 GPIGVILVPTRELASQIFSEAKKFGKAYG-LRVVAVYGGGSKWEQSKELK---EG------------------------A 347 (731)
T ss_pred CCeEEEEeccHHHHHHHHHHHHHhhhhcc-ceEEEeecCCcHHHHHHhhh---cC------------------------C
Confidence 344678899998887654 44522 35 89999999999998776665 43 7
Q ss_pred eEEEEecCCCC--CCcCCCCCCCCCeEEE
Q 031433 101 HMIVVTDACLP--LLSSGESAISARVLIN 127 (159)
Q Consensus 101 ~vLV~Td~~~~--~~~rGid~~~v~~VI~ 127 (159)
.++|||+-++= .--.+.|+..|++.+.
T Consensus 348 EivVaTPgRlid~VkmKatn~~rvS~LV~ 376 (731)
T KOG0339|consen 348 EIVVATPGRLIDMVKMKATNLSRVSYLVL 376 (731)
T ss_pred eEEEechHHHHHHHHhhcccceeeeEEEE
Confidence 88999964100 0123778888887663
|
|
| >TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase | Back alignment and domain information |
|---|
Probab=85.15 E-value=4.5 Score=37.32 Aligned_cols=52 Identities=15% Similarity=0.210 Sum_probs=39.4
Q ss_pred HHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCC--CccEEEeecCCCHHHHH
Q 031433 13 ELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLA--DISFSSLHSDLAETERT 66 (159)
Q Consensus 13 ~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~--~i~~~~l~~~~~~~~R~ 66 (159)
-+|+.+.. .+..++|+.+++++-+....+.|++.+ .+.+..++|+.+.++|.
T Consensus 71 PiL~~l~~--~~~~~aL~l~PtraLa~q~~~~l~~l~~~~i~v~~~~Gdt~~~~r~ 124 (742)
T TIGR03817 71 PVLSALAD--DPRATALYLAPTKALAADQLRAVRELTLRGVRPATYDGDTPTEERR 124 (742)
T ss_pred HHHHHHhh--CCCcEEEEEcChHHHHHHHHHHHHHhccCCeEEEEEeCCCCHHHHH
Confidence 34554443 345789999999999999998888752 36888999999987763
|
A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA. |
| >PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family | Back alignment and domain information |
|---|
Probab=85.09 E-value=2.8 Score=27.90 Aligned_cols=54 Identities=17% Similarity=0.171 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHH-----HhcCCCccEEEeecCCC
Q 031433 8 QETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSA-----VSNLADISFSSLHSDLA 61 (159)
Q Consensus 8 ~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~-----L~~~~~i~~~~l~~~~~ 61 (159)
.+.+.+.+..........+++|+||++.......+.. |...|+-++..+.|++.
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~iv~yc~~~~~~~~~~~~~~~~~l~~~g~~~v~~l~GG~~ 108 (113)
T PF00581_consen 50 EDKLDEFLKELGKKIDKDKDIVFYCSSGWRSGSAAAARVAWILKKLGFKNVYILDGGFE 108 (113)
T ss_dssp HHHHHHHHHHHTHGSTTTSEEEEEESSSCHHHHHHHHHHHHHHHHTTTSSEEEETTHHH
T ss_pred ccccccccccccccccccccceeeeecccccchhHHHHHHHHHHHcCCCCEEEecChHH
Confidence 3444444554444345667899999655555555444 77777558888888864
|
; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A .... |
| >cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain | Back alignment and domain information |
|---|
Probab=85.08 E-value=0.96 Score=30.07 Aligned_cols=39 Identities=8% Similarity=0.166 Sum_probs=31.1
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCC
Q 031433 23 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 61 (159)
Q Consensus 23 ~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~ 61 (159)
.+.++++|||++-..+...+..|+..|+-++..+.|++.
T Consensus 59 ~~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~l~Gg~~ 97 (103)
T cd01447 59 AEDKPFVFYCASGWRSALAGKTLQDMGLKPVYNIEGGFK 97 (103)
T ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHcChHHhEeecCcHH
Confidence 456899999998777888889999988534778888763
|
This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins. |
| >PLN02160 thiosulfate sulfurtransferase | Back alignment and domain information |
|---|
Probab=85.00 E-value=2.8 Score=30.19 Aligned_cols=38 Identities=11% Similarity=0.097 Sum_probs=32.5
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCC
Q 031433 23 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDL 60 (159)
Q Consensus 23 ~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~ 60 (159)
.+++++|++|++-.+....+..|...|+-.+..+.|++
T Consensus 79 ~~~~~IivyC~sG~RS~~Aa~~L~~~G~~~v~~l~GG~ 116 (136)
T PLN02160 79 NPADDILVGCQSGARSLKATTELVAAGYKKVRNKGGGY 116 (136)
T ss_pred CCCCcEEEECCCcHHHHHHHHHHHHcCCCCeeecCCcH
Confidence 45689999999999999999999998854677788876
|
|
| >cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily | Back alignment and domain information |
|---|
Probab=84.99 E-value=1.4 Score=29.51 Aligned_cols=37 Identities=8% Similarity=0.107 Sum_probs=31.0
Q ss_pred CCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCC
Q 031433 25 GLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 61 (159)
Q Consensus 25 ~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~ 61 (159)
+++++++|.+-..+...+..|...|+-++..+.|++.
T Consensus 65 ~~~vv~~c~~g~~s~~~a~~L~~~G~~~v~~l~GG~~ 101 (105)
T cd01525 65 GKIIVIVSHSHKHAALFAAFLVKCGVPRVCILDGGIN 101 (105)
T ss_pred CCeEEEEeCCCccHHHHHHHHHHcCCCCEEEEeCcHH
Confidence 5789999998888888899999998646788999874
|
Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD. |
| >TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein | Back alignment and domain information |
|---|
Probab=84.96 E-value=3.2 Score=30.88 Aligned_cols=38 Identities=5% Similarity=-0.039 Sum_probs=30.5
Q ss_pred CCCCcEEEEeCchH-HHHHHHHHHhcCCCccEEEeecCC
Q 031433 23 RPGLPMIVCCSSRD-ELDAVCSAVSNLADISFSSLHSDL 60 (159)
Q Consensus 23 ~~~~k~iIF~ns~~-~~~~l~~~L~~~~~i~~~~l~~~~ 60 (159)
.+++++|+||++-. .....+..|...|+-++..+.|++
T Consensus 114 ~~d~~IVvYC~~G~~~S~~aa~~L~~~G~~~V~~l~GG~ 152 (162)
T TIGR03865 114 DKDRPLVFYCLADCWMSWNAAKRALAYGYSNVYWYPDGT 152 (162)
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHhcCCcceEEecCCH
Confidence 46789999999753 566778888888876788898986
|
Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes. |
| >cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4 | Back alignment and domain information |
|---|
Probab=84.61 E-value=3.1 Score=30.28 Aligned_cols=37 Identities=11% Similarity=0.079 Sum_probs=32.5
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCC
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDL 60 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~ 60 (159)
...++||+|.+...+...+..|+..|+.++..|.|++
T Consensus 48 ~~~~vVv~c~~g~~a~~aa~~L~~~G~~~v~~L~GG~ 84 (145)
T cd01535 48 AAERYVLTCGSSLLARFAAADLAALTVKPVFVLEGGT 84 (145)
T ss_pred CCCCEEEEeCCChHHHHHHHHHHHcCCcCeEEecCcH
Confidence 4689999999988888899999998866899999987
|
This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue. |
| >cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily | Back alignment and domain information |
|---|
Probab=83.86 E-value=1.9 Score=29.41 Aligned_cols=39 Identities=10% Similarity=0.157 Sum_probs=31.3
Q ss_pred CCCCCcEEEEeCch--HHHHHHHHHHhcCCCccEEEeecCCC
Q 031433 22 RRPGLPMIVCCSSR--DELDAVCSAVSNLADISFSSLHSDLA 61 (159)
Q Consensus 22 ~~~~~k~iIF~ns~--~~~~~l~~~L~~~~~i~~~~l~~~~~ 61 (159)
-.+.++++|+|++. ..+..++..|+..|+ .+..+.|++.
T Consensus 61 i~~~~~vvvyc~~g~~~~s~~~a~~l~~~G~-~v~~l~GG~~ 101 (110)
T cd01521 61 LDKEKLFVVYCDGPGCNGATKAALKLAELGF-PVKEMIGGLD 101 (110)
T ss_pred CCCCCeEEEEECCCCCchHHHHHHHHHHcCC-eEEEecCCHH
Confidence 34578999999975 367888899999985 7888998873
|
This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins. |
| >PRK09751 putative ATP-dependent helicase Lhr; Provisional | Back alignment and domain information |
|---|
Probab=83.54 E-value=6.4 Score=39.22 Aligned_cols=78 Identities=14% Similarity=0.138 Sum_probs=56.1
Q ss_pred CCcEEEEeCchHHHHHHHHHHhc---------------CCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCC
Q 031433 25 GLPMIVCCSSRDELDAVCSAVSN---------------LADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGD 89 (159)
Q Consensus 25 ~~k~iIF~ns~~~~~~l~~~L~~---------------~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~ 89 (159)
+.++|+.+++++-+.++.+.|+. ...+.+...||+.+.++|.+.++ .
T Consensus 37 ~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V~vrtGDt~~~eR~rll~----~-------------- 98 (1490)
T PRK09751 37 TSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRVGIRTGDTPAQERSKLTR----N-------------- 98 (1490)
T ss_pred CCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEEEEEECCCCHHHHHHHhc----C--------------
Confidence 47899999999999988887752 11378999999999999876433 2
Q ss_pred CCCCCCCCCceeEEEEecCCCCCC--cCC-CCCCCCCeEEEcc
Q 031433 90 ESETGKDEHKSHMIVVTDACLPLL--SSG-ESAISARVLINYE 129 (159)
Q Consensus 90 ~~~~~~~~~~~~vLV~Td~~~~~~--~rG-id~~~v~~VI~~d 129 (159)
..+|||+|.-.+-++ .++ ..+.++++||-=+
T Consensus 99 ---------ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE 132 (1490)
T PRK09751 99 ---------PPDILITTPESLYLMLTSRARETLRGVETVIIDE 132 (1490)
T ss_pred ---------CCCEEEecHHHHHHHHhhhhhhhhccCCEEEEec
Confidence 578999997532211 222 3578889888544
|
|
| >cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain | Back alignment and domain information |
|---|
Probab=83.51 E-value=3.9 Score=29.46 Aligned_cols=51 Identities=6% Similarity=-0.074 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEeCc---hHHHHHHHHHHhcCCCccEEEeecCCC
Q 031433 9 ETLVELLHLVVAGRRPGLPMIVCCSS---RDELDAVCSAVSNLADISFSSLHSDLA 61 (159)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~k~iIF~ns---~~~~~~l~~~L~~~~~i~~~~l~~~~~ 61 (159)
+.+.+++..+- -.+..++||||++ -..+-.+.-.|+..|+-++..+.|++.
T Consensus 81 ~~~~~~~~~~G--I~~~~~vVvY~~~~~~g~~A~r~~~~l~~~G~~~v~ildGG~~ 134 (138)
T cd01445 81 AEFAAMFEAKG--IDLDKHLIATDGDDLGGFTACHIALAARLCGHPDVAILDGGFF 134 (138)
T ss_pred HHHHHHHHHcC--CCCCCeEEEECCCCCcchHHHHHHHHHHHcCCCCeEEeCCCHH
Confidence 45556665432 4457899999986 445566677777778656788888764
|
Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats. |
| >cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3 | Back alignment and domain information |
|---|
Probab=83.21 E-value=1.9 Score=28.51 Aligned_cols=37 Identities=16% Similarity=0.165 Sum_probs=30.4
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCC
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 61 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~ 61 (159)
.++++++||.+-......+..|...|+ .+..+.|++.
T Consensus 55 ~~~~iv~~c~~G~rs~~aa~~L~~~G~-~v~~l~GG~~ 91 (95)
T cd01534 55 RGARIVLADDDGVRADMTASWLAQMGW-EVYVLEGGLA 91 (95)
T ss_pred CCCeEEEECCCCChHHHHHHHHHHcCC-EEEEecCcHH
Confidence 357899999998778888899988885 6777888873
|
This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue. |
| >PRK09401 reverse gyrase; Reviewed | Back alignment and domain information |
|---|
Probab=82.83 E-value=3.8 Score=39.87 Aligned_cols=62 Identities=19% Similarity=0.305 Sum_probs=47.9
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcCC---CccEEEe--ecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCC
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSNLA---DISFSSL--HSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEH 98 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~~~---~i~~~~l--~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (159)
.+.+++|.++|+.-+..+++.++..+ .+.+..+ |++++..++....+.+.++
T Consensus 122 ~g~~alIL~PTreLa~Qi~~~l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~----------------------- 178 (1176)
T PRK09401 122 KGKKSYIIFPTRLLVEQVVEKLEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEG----------------------- 178 (1176)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHhhhcCceEEEEEccCCcchhHHHHHHHHHhcC-----------------------
Confidence 46899999999999999999888752 1344444 4556678888888888887
Q ss_pred ceeEEEEecC
Q 031433 99 KSHMIVVTDA 108 (159)
Q Consensus 99 ~~~vLV~Td~ 108 (159)
..+|+|+|.-
T Consensus 179 ~~~IlV~Tp~ 188 (1176)
T PRK09401 179 DFDILVTTSQ 188 (1176)
T ss_pred CCCEEEECHH
Confidence 6899999963
|
|
| >cd00046 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=82.52 E-value=12 Score=24.98 Aligned_cols=54 Identities=13% Similarity=0.154 Sum_probs=37.5
Q ss_pred HHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCC--CccEEEeecCCCHHHHH
Q 031433 12 VELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLA--DISFSSLHSDLAETERT 66 (159)
Q Consensus 12 ~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~--~i~~~~l~~~~~~~~R~ 66 (159)
..++..+.. ....++++|+|+++..+++..+.+.... ...+..++++....+..
T Consensus 18 ~~~~~~~~~-~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (144)
T cd00046 18 LLPILELLD-SLKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQE 73 (144)
T ss_pred HHHHHHHHh-cccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHH
Confidence 333443443 2356899999999999998888877764 26788888876655544
|
A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region. |
| >cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily | Back alignment and domain information |
|---|
Probab=82.44 E-value=1.9 Score=30.34 Aligned_cols=39 Identities=15% Similarity=0.143 Sum_probs=30.5
Q ss_pred CCCCcEEEEeC-chHHHHHHHHHHhcC------------CCccEEEeecCCC
Q 031433 23 RPGLPMIVCCS-SRDELDAVCSAVSNL------------ADISFSSLHSDLA 61 (159)
Q Consensus 23 ~~~~k~iIF~n-s~~~~~~l~~~L~~~------------~~i~~~~l~~~~~ 61 (159)
.+.++++++|+ +-......+..|+.. |+.++..|.|++.
T Consensus 66 ~~~~~vv~yC~~sg~rs~~aa~~L~~~~~~~~~~~~~~~g~~~v~~L~GG~~ 117 (121)
T cd01530 66 KKRRVLIFHCEFSSKRGPRMARHLRNLDRELNSNRYPLLYYPEIYILEGGYK 117 (121)
T ss_pred CCCCEEEEECCCccccHHHHHHHHHHHhhhhccccCCCCCCCeEEEEcChhH
Confidence 45688999997 777777788888874 6558999999874
|
They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR). |
| >PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases | Back alignment and domain information |
|---|
Probab=81.10 E-value=4.1 Score=32.39 Aligned_cols=46 Identities=13% Similarity=-0.028 Sum_probs=37.4
Q ss_pred ceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcc-cCCCC
Q 031433 99 KSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC-LAAGT 149 (159)
Q Consensus 99 ~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~-~~~~g 149 (159)
...|+|.=+. ++||+.+++....+..--|.+.++++|+ ||= |-++|
T Consensus 135 ~~~I~VGGn~----LsRGlTleGL~vsYf~R~s~~~DTL~Qm-gRwFGYR~g 181 (239)
T PF10593_consen 135 LNVIAVGGNK----LSRGLTLEGLTVSYFLRNSKQYDTLMQM-GRWFGYRPG 181 (239)
T ss_pred ceEEEECCcc----ccCceeECCcEEEEecCCCchHHHHHHH-hhcccCCcc
Confidence 3788899898 9999999999999999989977777774 776 44443
|
This domain is found associated with a helicase domain of superfamily type II []. |
| >KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription] | Back alignment and domain information |
|---|
Probab=81.02 E-value=12 Score=34.95 Aligned_cols=60 Identities=13% Similarity=0.121 Sum_probs=44.4
Q ss_pred HHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcc
Q 031433 14 LLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHT 75 (159)
Q Consensus 14 ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~ 75 (159)
+|..+......+.+.+|.|+---.-+++.+.-+-.+.+.+..+||+ +++|....+.+...
T Consensus 206 ~l~yl~~~~~~~GPfLVi~P~StL~NW~~Ef~rf~P~l~~~~~~Gd--k~eR~~~~r~~~~~ 265 (971)
T KOG0385|consen 206 LLGYLKGRKGIPGPFLVIAPKSTLDNWMNEFKRFTPSLNVVVYHGD--KEERAALRRDIMLP 265 (971)
T ss_pred HHHHHHHhcCCCCCeEEEeeHhhHHHHHHHHHHhCCCcceEEEeCC--HHHHHHHHHHhhcc
Confidence 3443333244568999999977666777766666677899999994 69999999987775
|
|
| >PRK01415 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=80.77 E-value=4 Score=32.69 Aligned_cols=40 Identities=10% Similarity=0.135 Sum_probs=34.7
Q ss_pred CCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCC
Q 031433 22 RRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 61 (159)
Q Consensus 22 ~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~ 61 (159)
..+++++++||.+--.++..+..|++.|+-++..|.|++.
T Consensus 168 ~~k~k~Iv~yCtgGiRs~kAa~~L~~~Gf~~Vy~L~GGi~ 207 (247)
T PRK01415 168 LLKGKKIAMVCTGGIRCEKSTSLLKSIGYDEVYHLKGGIL 207 (247)
T ss_pred hcCCCeEEEECCCChHHHHHHHHHHHcCCCcEEEechHHH
Confidence 3457899999999999999999999999656889999874
|
|
| >COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=80.54 E-value=8.7 Score=34.03 Aligned_cols=79 Identities=14% Similarity=0.132 Sum_probs=55.8
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhcC-C--CccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCc
Q 031433 23 RPGLPMIVCCSSRDELDAVCSAVSNL-A--DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHK 99 (159)
Q Consensus 23 ~~~~k~iIF~ns~~~~~~l~~~L~~~-~--~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (159)
+.++|+|+-.+|+--+..=+..+++- + .-.+..++|+.++++|...+. +
T Consensus 56 ~~~~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~~ltGev~p~~R~~~w~----------------------------~ 107 (542)
T COG1111 56 WFGGKVLFLAPTKPLVLQHAEFCRKVTGIPEDEIAALTGEVRPEEREELWA----------------------------K 107 (542)
T ss_pred hcCCeEEEecCCchHHHHHHHHHHHHhCCChhheeeecCCCChHHHHHHHh----------------------------h
Confidence 34458999999998877766666654 1 127889999999999986554 4
Q ss_pred eeEEEEecCCC--CCCcCCCCCCCCCeEEEcc
Q 031433 100 SHMIVVTDACL--PLLSSGESAISARVLINYE 129 (159)
Q Consensus 100 ~~vLV~Td~~~--~~~~rGid~~~v~~VI~~d 129 (159)
.+|+|+|+-.. -+.+-=+|..++.++|.-+
T Consensus 108 ~kVfvaTPQvveNDl~~Grid~~dv~~lifDE 139 (542)
T COG1111 108 KKVFVATPQVVENDLKAGRIDLDDVSLLIFDE 139 (542)
T ss_pred CCEEEeccHHHHhHHhcCccChHHceEEEech
Confidence 68899985300 0034448999999988533
|
|
| >PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional | Back alignment and domain information |
|---|
Probab=80.29 E-value=8.1 Score=26.55 Aligned_cols=51 Identities=10% Similarity=0.117 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCC
Q 031433 8 QETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 61 (159)
Q Consensus 8 ~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~ 61 (159)
.+.+.+.++.+. ....+++++||++-..+...+..|...|+ ......|++.
T Consensus 45 ~~~l~~~l~~l~--~~~~~~IVlyC~~G~rS~~aa~~L~~~G~-~~v~~~GG~~ 95 (104)
T PRK10287 45 LKEVKERIATAV--PDKNDTVKLYCNAGRQSGQAKEILSEMGY-THAENAGGLK 95 (104)
T ss_pred HHHHHHHHHhcC--CCCCCeEEEEeCCChHHHHHHHHHHHcCC-CeEEecCCHH
Confidence 334444444332 23457899999998888888999998884 5445567653
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 159 | ||||
| 2vso_A | 395 | Crystal Structure Of A Translation Initiation Compl | 2e-05 | ||
| 2j0u_B | 374 | The Crystal Structure Of Eif4aiii-Barentsz Complex | 3e-05 | ||
| 2j0u_A | 374 | The Crystal Structure Of Eif4aiii-Barentsz Complex | 3e-05 | ||
| 2hxy_A | 391 | Crystal Structure Of Human Apo-Eif4aiii Length = 39 | 3e-05 | ||
| 2j0q_A | 410 | The Crystal Structure Of The Exon Junction Complex | 3e-05 | ||
| 2xb2_A | 411 | Crystal Structure Of The Core Mago-Y14-Eif4aiii-Bar | 3e-05 | ||
| 2hyi_C | 413 | Structure Of The Human Exon Junction Complex With A | 4e-05 | ||
| 3eiq_A | 414 | Crystal Structure Of Pdcd4-eif4a Length = 414 | 5e-05 | ||
| 2zu6_A | 388 | Crystal Structure Of The Eif4a-Pdcd4 Complex Length | 6e-05 | ||
| 1fuk_A | 165 | Crystal Structure Of The Carboxy Terminal Domain Of | 6e-05 | ||
| 1fuu_A | 394 | Yeast Initiation Factor 4a Length = 394 | 8e-05 |
| >pdb|2VSO|A Chain A, Crystal Structure Of A Translation Initiation Complex Length = 395 | Back alignment and structure |
|
| >pdb|2J0U|B Chain B, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0 A Resolution Length = 374 | Back alignment and structure |
|
| >pdb|2J0U|A Chain A, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0 A Resolution Length = 374 | Back alignment and structure |
|
| >pdb|2HXY|A Chain A, Crystal Structure Of Human Apo-Eif4aiii Length = 391 | Back alignment and structure |
|
| >pdb|2J0Q|A Chain A, The Crystal Structure Of The Exon Junction Complex At 3.2 A Resolution Length = 410 | Back alignment and structure |
|
| >pdb|2XB2|A Chain A, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz- Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd Machinery Length = 411 | Back alignment and structure |
|
| >pdb|2HYI|C Chain C, Structure Of The Human Exon Junction Complex With A Trapped Dead-Box Helicase Bound To Rna Length = 413 | Back alignment and structure |
|
| >pdb|3EIQ|A Chain A, Crystal Structure Of Pdcd4-eif4a Length = 414 | Back alignment and structure |
|
| >pdb|2ZU6|A Chain A, Crystal Structure Of The Eif4a-Pdcd4 Complex Length = 388 | Back alignment and structure |
|
| >pdb|1FUK|A Chain A, Crystal Structure Of The Carboxy Terminal Domain Of Yeast Eif4a Length = 165 | Back alignment and structure |
|
| >pdb|1FUU|A Chain A, Yeast Initiation Factor 4a Length = 394 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 Length = 165 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 5e-06
Identities = 31/112 (27%), Positives = 55/112 (49%), Gaps = 28/112 (25%)
Query: 29 IVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSG 88
++ C++R +++ + + + N + S+++SDL + ER I++EFR SG
Sbjct: 34 VIFCNTRRKVEELTTKLRND-KFTVSAIYSDLPQQERDTIMKEFR-------------SG 79
Query: 89 DESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRR 140
S +++ TD LL+ G ++INY+LP KE YI R
Sbjct: 80 ----------SSRILISTD----LLARGIDVQQVSLVINYDLPANKENYIHR 117
|
| >2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis} Length = 163 | Back alignment and structure |
|---|
Score = 39.8 bits (94), Expect = 6e-05
Identities = 20/121 (16%), Positives = 45/121 (37%), Gaps = 44/121 (36%)
Query: 28 MIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQS 87
I+ C +++ ++ + + + +H + + +R ++ EF+
Sbjct: 38 CIIFCRTKEHVNQLTDEL-DDLGYPCDKIHGGMIQEDRFDVMNEFK-------------- 82
Query: 88 GDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVL--------INYELPTKKETYIR 139
+ +V TD ++AR + INY+LP +KE+Y+
Sbjct: 83 ---------RGEYRYLVATD------------VAARGIDIENISLVINYDLPLEKESYVH 121
Query: 140 R 140
R
Sbjct: 122 R 122
|
| >3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} Length = 414 | Back alignment and structure |
|---|
Score = 40.2 bits (95), Expect = 1e-04
Identities = 31/115 (26%), Positives = 55/115 (47%), Gaps = 32/115 (27%)
Query: 28 MIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQS 87
++ ++R ++D + + D + S++H D+ + ER +I+ EFR S
Sbjct: 283 AVIFINTRRKVDWLTEKMHAR-DFTVSAMHGDMDQKERDVIMREFR-------------S 328
Query: 88 GDESETGKDEHKSHMIVVTDACLPLLSSG--ESAISARVLINYELPTKKETYIRR 140
G S +++ TD LL+ G +S ++INY+LPT +E YI R
Sbjct: 329 G----------SSRVLITTD----LLARGIDVQQVS--LVINYDLPTNRENYIHR 367
|
| >1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* Length = 394 | Back alignment and structure |
|---|
Score = 39.8 bits (94), Expect = 2e-04
Identities = 32/115 (27%), Positives = 57/115 (49%), Gaps = 32/115 (27%)
Query: 28 MIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQS 87
++ C++R +++ + + + N + S+++SDL + ER I++EFR S
Sbjct: 262 AVIFCNTRRKVEELTTKLRND-KFTVSAIYSDLPQQERDTIMKEFR-------------S 307
Query: 88 GDESETGKDEHKSHMIVVTDACLPLLSSG--ESAISARVLINYELPTKKETYIRR 140
G S +++ TD LL+ G +S ++INY+LP KE YI R
Sbjct: 308 G----------SSRILISTD----LLARGIDVQQVS--LVINYDLPANKENYIHR 346
|
| >2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A Length = 410 | Back alignment and structure |
|---|
Score = 39.5 bits (93), Expect = 2e-04
Identities = 28/115 (24%), Positives = 54/115 (46%), Gaps = 32/115 (27%)
Query: 28 MIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQS 87
++ C+++ ++D + + + + SS+H D+ + ER I++EFR S
Sbjct: 279 AVIFCNTKRKVDWLTEKMREA-NFTVSSMHGDMPQKERESIMKEFR-------------S 324
Query: 88 GDESETGKDEHKSHMIVVTDACLPLLSSG--ESAISARVLINYELPTKKETYIRR 140
G S +++ TD + + G +S ++INY+LP +E YI R
Sbjct: 325 G----------ASRVLISTD----VWARGLDVPQVS--LIINYDLPNNRELYIHR 363
|
| >1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A Length = 400 | Back alignment and structure |
|---|
Score = 38.7 bits (91), Expect = 4e-04
Identities = 23/121 (19%), Positives = 44/121 (36%), Gaps = 44/121 (36%)
Query: 28 MIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQS 87
I+ C+S + ++ + +++L S H+ + + ER + EFR
Sbjct: 261 AIIFCNSTNRVELLAKKITDL-GYSCYYSHARMKQQERNKVFHEFR-------------- 305
Query: 88 GDESETGKDEHKSHMIVVTDACLPLLSSGESAISAR--------VLINYELPTKKETYIR 139
+ K +V +D + R V+IN++ P ETY+
Sbjct: 306 ---------QGKVRTLVCSD------------LLTRGIDIQAVNVVINFDFPKTAETYLH 344
Query: 140 R 140
R
Sbjct: 345 R 345
|
| >3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} Length = 579 | Back alignment and structure |
|---|
Score = 37.9 bits (88), Expect = 7e-04
Identities = 19/123 (15%), Positives = 41/123 (33%), Gaps = 45/123 (36%)
Query: 28 MIVCCSSRDELDAVCSAVSNLA--DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTE 85
I+ + +CS + N D+ H + + +RT +++ F+
Sbjct: 291 AIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFK------------ 338
Query: 86 QSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVL--------INYELPTKKETY 137
+ +S ++V TD + AR + + +P++ Y
Sbjct: 339 -----------KDESGILVCTD------------VGARGMDFPNVHEVLQIGVPSELANY 375
Query: 138 IRR 140
I R
Sbjct: 376 IHR 378
|
| >1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19 Length = 172 | Back alignment and structure |
|---|
Score = 37.2 bits (87), Expect = 8e-04
Identities = 15/120 (12%), Positives = 38/120 (31%), Gaps = 44/120 (36%)
Query: 29 IVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSG 88
++ S A+ + + ++H + + ER ++F+
Sbjct: 35 VIFVKSVQRCIALAQLLVEQ-NFPAIAIHRGMPQEERLSRYQQFK--------------- 78
Query: 89 DESETGKDEHKSHMIVVTDACLPLLSSGESAISAR--------VLINYELPTKKETYIRR 140
+ + ++V T+ + R + NY++P +TY+ R
Sbjct: 79 --------DFQRRILVATN------------LFGRGMDIERVNIAFNYDMPEDSDTYLHR 118
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 159 | |||
| 2hjv_A | 163 | ATP-dependent RNA helicase DBPA; parallel alpha-be | 99.96 | |
| 1t5i_A | 172 | C_terminal domain of A probable ATP-dependent RNA | 99.96 | |
| 3eaq_A | 212 | Heat resistant RNA dependent ATPase; DEAD box RNA | 99.96 | |
| 2rb4_A | 175 | ATP-dependent RNA helicase DDX25; rossmann fold, s | 99.95 | |
| 1fuk_A | 165 | Eukaryotic initiation factor 4A; helicase, DEAD-bo | 99.95 | |
| 2jgn_A | 185 | DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosp | 99.95 | |
| 2p6n_A | 191 | ATP-dependent RNA helicase DDX41; DEAD, structural | 99.95 | |
| 3i32_A | 300 | Heat resistant RNA dependent ATPase; RNA helicase, | 99.94 | |
| 2yjt_D | 170 | ATP-dependent RNA helicase SRMB, regulator of ribo | 99.88 | |
| 2db3_A | 434 | ATP-dependent RNA helicase VASA; DEAD-BOX, protein | 99.93 | |
| 2i4i_A | 417 | ATP-dependent RNA helicase DDX3X; DEAD, structural | 99.92 | |
| 3pey_A | 395 | ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A | 99.91 | |
| 2j0s_A | 410 | ATP-dependent RNA helicase DDX48; mRNA processing, | 99.91 | |
| 2v1x_A | 591 | ATP-dependent DNA helicase Q1; DNA strand annealin | 99.91 | |
| 3i5x_A | 563 | ATP-dependent RNA helicase MSS116; protein-RNA com | 99.91 | |
| 3fht_A | 412 | ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box | 99.91 | |
| 1oyw_A | 523 | RECQ helicase, ATP-dependent DNA helicase; winged | 99.91 | |
| 3sqw_A | 579 | ATP-dependent RNA helicase MSS116, mitochondrial; | 99.91 | |
| 1s2m_A | 400 | Putative ATP-dependent RNA helicase DHH1; ATP-bind | 99.91 | |
| 4gl2_A | 699 | Interferon-induced helicase C domain-containing P; | 99.9 | |
| 3tbk_A | 555 | RIG-I helicase domain; DECH helicase, ATP binding, | 99.9 | |
| 1xti_A | 391 | Probable ATP-dependent RNA helicase P47; alpha-bet | 99.9 | |
| 4a2p_A | 556 | RIG-I, retinoic acid inducible protein I; hydrolas | 99.9 | |
| 3eiq_A | 414 | Eukaryotic initiation factor 4A-I; PDCD4, anti-onc | 99.9 | |
| 1hv8_A | 367 | Putative ATP-dependent RNA helicase MJ0669; RNA-bi | 99.9 | |
| 1wp9_A | 494 | ATP-dependent RNA helicase, putative; ATPase, DNA | 99.89 | |
| 2ykg_A | 696 | Probable ATP-dependent RNA helicase DDX58; hydrola | 99.88 | |
| 2d7d_A | 661 | Uvrabc system protein B; helicase, protein-DNA-ADP | 99.87 | |
| 4a2q_A | 797 | RIG-I, retinoic acid inducible protein I; hydrolas | 99.87 | |
| 1tf5_A | 844 | Preprotein translocase SECA subunit; ATPase, helic | 99.87 | |
| 3jux_A | 822 | Protein translocase subunit SECA; protein transloc | 99.87 | |
| 3oiy_A | 414 | Reverse gyrase helicase domain; topoisomerase, DNA | 99.87 | |
| 1c4o_A | 664 | DNA nucleotide excision repair enzyme UVRB; uvrabc | 99.87 | |
| 3fmp_B | 479 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 99.86 | |
| 1z5z_A | 271 | Helicase of the SNF2/RAD54 family; hydrolase, reco | 99.86 | |
| 4a2w_A | 936 | RIG-I, retinoic acid inducible protein I; hydrolas | 99.86 | |
| 2z0m_A | 337 | 337AA long hypothetical ATP-dependent RNA helicase | 99.86 | |
| 1fuu_A | 394 | Yeast initiation factor 4A; IF4A, helicase, DEAD-b | 99.85 | |
| 3fho_A | 508 | ATP-dependent RNA helicase DBP5; mRNA export, ATPa | 99.84 | |
| 2fsf_A | 853 | Preprotein translocase SECA subunit; ATPase, DNA-R | 99.83 | |
| 3dmq_A | 968 | RNA polymerase-associated protein RAPA; SWF2/SNF2, | 99.83 | |
| 1yks_A | 440 | Genome polyprotein [contains: flavivirin protease | 99.82 | |
| 1nkt_A | 922 | Preprotein translocase SECA 1 subunit; preprotein | 99.81 | |
| 2whx_A | 618 | Serine protease/ntpase/helicase NS3; transcription | 99.81 | |
| 2z83_A | 459 | Helicase/nucleoside triphosphatase; hydrolase, mem | 99.81 | |
| 2jlq_A | 451 | Serine protease subunit NS3; ribonucleoprotein, nu | 99.81 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 99.8 | |
| 4ddu_A | 1104 | Reverse gyrase; topoisomerase, DNA supercoiling, a | 99.8 | |
| 2fwr_A | 472 | DNA repair protein RAD25; DNA unwinding, XPB, DNA | 99.8 | |
| 3l9o_A | 1108 | ATP-dependent RNA helicase DOB1; REC-A fold, winge | 99.8 | |
| 2wv9_A | 673 | Flavivirin protease NS2B regulatory subunit, FLAV | 99.79 | |
| 3h1t_A | 590 | Type I site-specific restriction-modification syst | 99.79 | |
| 2xgj_A | 1010 | ATP-dependent RNA helicase DOB1; hydrolase-RNA com | 99.79 | |
| 1z63_A | 500 | Helicase of the SNF2/RAD54 hamily; protein-DNA com | 99.78 | |
| 2va8_A | 715 | SSO2462, SKI2-type helicase; hydrolase, DNA repair | 99.78 | |
| 3rc3_A | 677 | ATP-dependent RNA helicase SUPV3L1, mitochondrial; | 99.78 | |
| 2oca_A | 510 | DAR protein, ATP-dependent DNA helicase UVSW; ATP- | 99.77 | |
| 2v6i_A | 431 | RNA helicase; membrane, hydrolase, transmembrane, | 99.77 | |
| 1gku_B | 1054 | Reverse gyrase, TOP-RG; topoisomerase, DNA superco | 99.76 | |
| 3o8b_A | 666 | HCV NS3 protease/helicase; ntpase, RNA, translocat | 99.76 | |
| 2p6r_A | 702 | Afuhel308 helicase; protein-DNA complex, SF2 helic | 99.76 | |
| 2eyq_A | 1151 | TRCF, transcription-repair coupling factor; MFD, S | 99.76 | |
| 2zj8_A | 720 | DNA helicase, putative SKI2-type helicase; RECA fo | 99.75 | |
| 1z3i_X | 644 | Similar to RAD54-like; recombination ATPase helica | 99.74 | |
| 4a4z_A | 997 | Antiviral helicase SKI2; hydrolase, ATPase, mRNA d | 99.72 | |
| 1gm5_A | 780 | RECG; helicase, replication restart; HET: DNA ADP; | 99.71 | |
| 3mwy_W | 800 | Chromo domain-containing protein 1; SWI2/SNF2 ATPa | 99.71 | |
| 4f92_B | 1724 | U5 small nuclear ribonucleoprotein 200 kDa helica; | 99.54 | |
| 4f92_B | 1724 | U5 small nuclear ribonucleoprotein 200 kDa helica; | 99.52 | |
| 2w00_A | 1038 | HSDR, R.ECOR124I; ATP-binding, DNA-binding, restri | 99.37 | |
| 2vl7_A | 540 | XPD; helicase, unknown function; 2.25A {Sulfolobus | 98.49 | |
| 2ipc_A | 997 | Preprotein translocase SECA subunit; nucleotide bi | 98.0 | |
| 3hgt_A | 328 | HDA1 complex subunit 3; RECA-like domain, SWI2/SNF | 98.0 | |
| 4a15_A | 620 | XPD helicase, ATP-dependent DNA helicase TA0057; h | 96.94 | |
| 1gm5_A | 780 | RECG; helicase, replication restart; HET: DNA ADP; | 96.27 | |
| 3oiy_A | 414 | Reverse gyrase helicase domain; topoisomerase, DNA | 96.18 | |
| 3crv_A | 551 | XPD/RAD3 related DNA helicase; XPD helicase DNA re | 95.59 | |
| 4ddu_A | 1104 | Reverse gyrase; topoisomerase, DNA supercoiling, a | 94.54 | |
| 2eyq_A | 1151 | TRCF, transcription-repair coupling factor; MFD, S | 94.24 | |
| 1oyw_A | 523 | RECQ helicase, ATP-dependent DNA helicase; winged | 93.99 | |
| 3ber_A | 249 | Probable ATP-dependent RNA helicase DDX47; DEAD, A | 93.87 | |
| 1vec_A | 206 | ATP-dependent RNA helicase P54; DEAD-box protein, | 93.5 | |
| 3gk5_A | 108 | Uncharacterized rhodanese-related protein TVG08686 | 93.4 | |
| 1t6n_A | 220 | Probable ATP-dependent RNA helicase; RECA-like fol | 93.05 | |
| 2oxc_A | 230 | Probable ATP-dependent RNA helicase DDX20; DEAD, s | 92.92 | |
| 2jtq_A | 85 | Phage shock protein E; solution structure rhodanes | 92.65 | |
| 2v1x_A | 591 | ATP-dependent DNA helicase Q1; DNA strand annealin | 92.47 | |
| 3hix_A | 106 | ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q | 92.06 | |
| 3foj_A | 100 | Uncharacterized protein; protein SSP1007, structur | 91.57 | |
| 3bor_A | 237 | Human initiation factor 4A-II; translation initiat | 91.51 | |
| 3g5j_A | 134 | Putative ATP/GTP binding protein; N-terminal domai | 91.18 | |
| 2gxq_A | 207 | Heat resistant RNA dependent ATPase; RNA helicase, | 91.01 | |
| 3eme_A | 103 | Rhodanese-like domain protein; alpha-beta-alpha sa | 90.98 | |
| 1tq1_A | 129 | AT5G66040, senescence-associated family protein; C | 90.88 | |
| 1xti_A | 391 | Probable ATP-dependent RNA helicase P47; alpha-bet | 90.84 | |
| 3iuy_A | 228 | Probable ATP-dependent RNA helicase DDX53; REC-A-l | 90.47 | |
| 1gmx_A | 108 | GLPE protein; transferase, rhodanese, sulfurtransf | 90.25 | |
| 1qde_A | 224 | EIF4A, translation initiation factor 4A; DEAD box | 89.65 | |
| 3fe2_A | 242 | Probable ATP-dependent RNA helicase DDX5; DEAD, AD | 89.64 | |
| 3iwh_A | 103 | Rhodanese-like domain protein; alpha-beta-alpha sa | 89.5 | |
| 3ilm_A | 141 | ALR3790 protein; rhodanese-like, NSR437H, NESG, st | 88.81 | |
| 2k0z_A | 110 | Uncharacterized protein HP1203; A/B domain, struct | 88.45 | |
| 2l82_A | 162 | Designed protein OR32; structural genomics, northe | 88.15 | |
| 3ly5_A | 262 | ATP-dependent RNA helicase DDX18; alpha-beta, stru | 87.85 | |
| 1wv9_A | 94 | Rhodanese homolog TT1651; CDC25, phosphatase, sulf | 87.76 | |
| 2fsx_A | 148 | RV0390, COG0607: rhodanese-related sulfurtransfera | 87.5 | |
| 2pl3_A | 236 | Probable ATP-dependent RNA helicase DDX10; DEAD, s | 87.23 | |
| 3d1p_A | 139 | Putative thiosulfate sulfurtransferase YOR285W; at | 87.19 | |
| 1qxn_A | 137 | SUD, sulfide dehydrogenase; polysulfide-sulfur tra | 86.88 | |
| 1s2m_A | 400 | Putative ATP-dependent RNA helicase DHH1; ATP-bind | 86.85 | |
| 3flh_A | 124 | Uncharacterized protein LP_1913; alpha-beta protei | 86.81 | |
| 2hhg_A | 139 | Hypothetical protein RPA3614; MCSG, structural gen | 86.67 | |
| 1vee_A | 134 | Proline-rich protein family; hypothetical protein, | 85.81 | |
| 2j0s_A | 410 | ATP-dependent RNA helicase DDX48; mRNA processing, | 85.72 | |
| 1wp9_A | 494 | ATP-dependent RNA helicase, putative; ATPase, DNA | 85.68 | |
| 3fmo_B | 300 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 85.58 | |
| 3dkp_A | 245 | Probable ATP-dependent RNA helicase DDX52; DEAD, A | 85.44 | |
| 1fuu_A | 394 | Yeast initiation factor 4A; IF4A, helicase, DEAD-b | 85.03 | |
| 3nhv_A | 144 | BH2092 protein; alpha-beta protein, structural gen | 84.35 | |
| 1q0u_A | 219 | Bstdead; DEAD protein, RNA binding protein; 1.85A | 84.22 | |
| 1wrb_A | 253 | DJVLGB; RNA helicase, DEAD BOX, VASA, structural g | 84.03 | |
| 2db3_A | 434 | ATP-dependent RNA helicase VASA; DEAD-BOX, protein | 83.99 | |
| 2lnd_A | 112 | De novo designed protein, PFK fold; structural gen | 83.43 | |
| 2i4i_A | 417 | ATP-dependent RNA helicase DDX3X; DEAD, structural | 82.67 | |
| 4a2p_A | 556 | RIG-I, retinoic acid inducible protein I; hydrolas | 81.02 | |
| 3tbk_A | 555 | RIG-I helicase domain; DECH helicase, ATP binding, | 80.73 | |
| 3aay_A | 277 | Putative thiosulfate sulfurtransferase; sulfurtran | 80.21 | |
| 3eiq_A | 414 | Eukaryotic initiation factor 4A-I; PDCD4, anti-onc | 80.18 |
| >2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-28 Score=181.77 Aligned_cols=119 Identities=21% Similarity=0.396 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCC
Q 031433 9 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSG 88 (159)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~ 88 (159)
+.+.+.|..++. ...+.++||||++++.++.+++.|...+ +.+..+||+|++++|..++++|+++
T Consensus 20 ~~K~~~L~~ll~-~~~~~~~lVF~~~~~~~~~l~~~L~~~~-~~~~~~hg~~~~~~r~~~~~~f~~g------------- 84 (163)
T 2hjv_A 20 ENKFSLLKDVLM-TENPDSCIIFCRTKEHVNQLTDELDDLG-YPCDKIHGGMIQEDRFDVMNEFKRG------------- 84 (163)
T ss_dssp GGHHHHHHHHHH-HHCCSSEEEECSSHHHHHHHHHHHHHTT-CCEEEECTTSCHHHHHHHHHHHHTT-------------
T ss_pred HHHHHHHHHHHH-hcCCCcEEEEECCHHHHHHHHHHHHHcC-CcEEEEeCCCCHHHHHHHHHHHHcC-------------
Confidence 334444444554 3456899999999999999999999998 6999999999999999999999998
Q ss_pred CCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCC--CCeEEEEEE
Q 031433 89 DESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAA--GTSFSDIIL 156 (159)
Q Consensus 89 ~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~--~g~~i~~v~ 156 (159)
+.+|||||++ +++|+|+|++++||+||+|+++..|+||+||++|. .|.++.|++
T Consensus 85 ----------~~~vlv~T~~----~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~ 140 (163)
T 2hjv_A 85 ----------EYRYLVATDV----AARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVT 140 (163)
T ss_dssp ----------SCSEEEECGG----GTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEEC
T ss_pred ----------CCeEEEECCh----hhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEec
Confidence 8999999999 99999999999999999999999999999999765 467776653
|
| >1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.1e-28 Score=182.92 Aligned_cols=117 Identities=14% Similarity=0.217 Sum_probs=103.6
Q ss_pred HHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCC
Q 031433 11 LVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDE 90 (159)
Q Consensus 11 l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~ 90 (159)
+.+.|..++. ...+.++||||++++.++.+++.|...+ +.+..+||+|++++|..++++|++|
T Consensus 18 K~~~L~~ll~-~~~~~~~lVF~~~~~~~~~l~~~L~~~~-~~~~~~hg~~~~~~r~~~~~~f~~g--------------- 80 (172)
T 1t5i_A 18 KNRKLFDLLD-VLEFNQVVIFVKSVQRCIALAQLLVEQN-FPAIAIHRGMPQEERLSRYQQFKDF--------------- 80 (172)
T ss_dssp HHHHHHHHHH-HSCCSSEEEECSSHHHHHHHHHHHHHTT-CCEEEECTTSCHHHHHHHHHHHHTT---------------
T ss_pred HHHHHHHHHH-hCCCCcEEEEECCHHHHHHHHHHHHhcC-CCEEEEECCCCHHHHHHHHHHHHCC---------------
Confidence 3344444554 4456899999999999999999999998 6999999999999999999999998
Q ss_pred CCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccC--CCCeEEEEEE
Q 031433 91 SETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLA--AGTSFSDIIL 156 (159)
Q Consensus 91 ~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~--~~g~~i~~v~ 156 (159)
+.+|||||++ +++|+|+|++++|||||+|+++..|+||+||++| +.|.++.|++
T Consensus 81 --------~~~vLvaT~~----~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~ 136 (172)
T 1t5i_A 81 --------QRRILVATNL----FGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVS 136 (172)
T ss_dssp --------SCSEEEESSC----CSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEEC
T ss_pred --------CCcEEEECCc----hhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEc
Confidence 8999999999 9999999999999999999999999999999955 4578887764
|
| >3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A | Back alignment and structure |
|---|
Probab=99.96 E-value=3.3e-28 Score=187.50 Aligned_cols=117 Identities=22% Similarity=0.330 Sum_probs=103.0
Q ss_pred HHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCC
Q 031433 11 LVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDE 90 (159)
Q Consensus 11 l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~ 90 (159)
+.+.|..++. ...+.++||||++++.++.+++.|...+ +.+..+||+|++++|.++++.|++|
T Consensus 18 k~~~l~~ll~-~~~~~~~lVF~~~~~~~~~l~~~L~~~~-~~~~~lhg~~~~~~r~~~~~~f~~g--------------- 80 (212)
T 3eaq_A 18 RLEVLSDLLY-VASPDRAMVFTRTKAETEEIAQGLLRLG-HPAQALHGDLSQGERERVLGAFRQG--------------- 80 (212)
T ss_dssp HHHHHHHHHH-HHCCSCEEEECSSHHHHHHHHHHHHHHT-CCEEEECSSSCHHHHHHHHHHHHSS---------------
T ss_pred HHHHHHHHHH-hCCCCeEEEEeCCHHHHHHHHHHHHHcC-CCEEEEECCCCHHHHHHHHHHHHCC---------------
Confidence 3333333444 3446899999999999999999999988 6999999999999999999999998
Q ss_pred CCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCC--CCeEEEEEE
Q 031433 91 SETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAA--GTSFSDIIL 156 (159)
Q Consensus 91 ~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~--~g~~i~~v~ 156 (159)
+.+|||||++ +++|+|+|++++|||||+|+++..|+||+||+||. .|.++.|++
T Consensus 81 --------~~~vlvaT~~----~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~ 136 (212)
T 3eaq_A 81 --------EVRVLVATDV----AARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYG 136 (212)
T ss_dssp --------SCCEEEECTT----TTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEEC
T ss_pred --------CCeEEEecCh----hhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEc
Confidence 8999999999 99999999999999999999999999999999776 477777764
|
| >2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-27 Score=178.67 Aligned_cols=120 Identities=18% Similarity=0.279 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccC
Q 031433 8 QETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQS 87 (159)
Q Consensus 8 ~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~ 87 (159)
.+.+.+.|..++. .....++||||++++.++.+++.|...+ +.+..+||+|++++|..++++|++|
T Consensus 18 ~~~K~~~L~~ll~-~~~~~~~lVF~~~~~~~~~l~~~L~~~~-~~~~~~~g~~~~~~R~~~~~~f~~g------------ 83 (175)
T 2rb4_A 18 RKDKYQALCNIYG-SITIGQAIIFCQTRRNAKWLTVEMIQDG-HQVSLLSGELTVEQRASIIQRFRDG------------ 83 (175)
T ss_dssp HHHHHHHHHHHHT-TSCCSEEEEECSCHHHHHHHHHHHHTTT-CCEEEECSSCCHHHHHHHHHHHHTT------------
T ss_pred hHhHHHHHHHHHH-hCCCCCEEEEECCHHHHHHHHHHHHHcC-CcEEEEeCCCCHHHHHHHHHHHHcC------------
Confidence 3435555555666 4567899999999999999999999998 6999999999999999999999998
Q ss_pred CCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCC------CChhHHHhhhhcccCC--CCeEEEEEE
Q 031433 88 GDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELP------TKKETYIRRMTTCLAA--GTSFSDIIL 156 (159)
Q Consensus 88 ~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P------~~~~~yi~R~GR~~~~--~g~~i~~v~ 156 (159)
+.+|||||++ +++|+|+|++++|||||+| .++.+|+||+||++|. .|.++.|++
T Consensus 84 -----------~~~vLvaT~~----~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~ 145 (175)
T 2rb4_A 84 -----------KEKVLITTNV----CARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIE 145 (175)
T ss_dssp -----------SCSEEEECCS----CCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEEC
T ss_pred -----------CCeEEEEecc----hhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEc
Confidence 8999999999 9999999999999999999 8999999999999764 567776653
|
| >1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-27 Score=176.60 Aligned_cols=117 Identities=26% Similarity=0.415 Sum_probs=102.4
Q ss_pred HHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCC
Q 031433 11 LVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDE 90 (159)
Q Consensus 11 l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~ 90 (159)
+.+.|..++. ...+.++||||++++.++.+++.|+..+ +.+..+||+|++++|.+++++|+++
T Consensus 17 K~~~l~~ll~-~~~~~~~lVF~~~~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~r~~~~~~f~~g--------------- 79 (165)
T 1fuk_A 17 KYECLTDLYD-SISVTQAVIFCNTRRKVEELTTKLRNDK-FTVSAIYSDLPQQERDTIMKEFRSG--------------- 79 (165)
T ss_dssp HHHHHHHHHH-HTTCSCEEEEESSHHHHHHHHHHHHHTT-CCEEEECTTSCHHHHHHHHHHHHTT---------------
T ss_pred HHHHHHHHHH-hCCCCCEEEEECCHHHHHHHHHHHHHcC-CCEEEEECCCCHHHHHHHHHHHHcC---------------
Confidence 4444444554 3456899999999999999999999988 6999999999999999999999998
Q ss_pred CCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCC--CCeEEEEEE
Q 031433 91 SETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAA--GTSFSDIIL 156 (159)
Q Consensus 91 ~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~--~g~~i~~v~ 156 (159)
+.+|||||++ +++|+|+|++++||+||+|+++..|+||+||++|. .|.++.|++
T Consensus 80 --------~~~vlv~T~~----~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~ 135 (165)
T 1fuk_A 80 --------SSRILISTDL----LARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVT 135 (165)
T ss_dssp --------SCSEEEEEGG----GTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEE
T ss_pred --------CCEEEEEcCh----hhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEc
Confidence 8999999999 99999999999999999999999999999999765 578877764
|
| >2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-27 Score=180.73 Aligned_cols=119 Identities=19% Similarity=0.290 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCC
Q 031433 9 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSG 88 (159)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~ 88 (159)
+++..|++ ++....++.++||||++++.++.+++.|...+ +.+..+||+|++++|.+++++|+.|
T Consensus 31 ~K~~~L~~-ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g-~~~~~lhg~~~~~~r~~~~~~f~~g------------- 95 (185)
T 2jgn_A 31 DKRSFLLD-LLNATGKDSLTLVFVETKKGADSLEDFLYHEG-YACTSIHGDRSQRDREEALHQFRSG------------- 95 (185)
T ss_dssp GHHHHHHH-HHHHC-CCSCEEEEESCHHHHHHHHHHHHHTT-CCEEEEC--------CHHHHHHHHT-------------
T ss_pred HHHHHHHH-HHHhcCCCCeEEEEECCHHHHHHHHHHHHHcC-CceEEEeCCCCHHHHHHHHHHHHcC-------------
Confidence 33333333 44434467899999999999999999999998 7999999999999999999999998
Q ss_pred CCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCC--CCeEEEEEE
Q 031433 89 DESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAA--GTSFSDIIL 156 (159)
Q Consensus 89 ~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~--~g~~i~~v~ 156 (159)
+.+|||||++ +++|+|+|++++||+||+|+++..|+||+||++|. .|.++.|++
T Consensus 96 ----------~~~vLvaT~~----~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~ 151 (185)
T 2jgn_A 96 ----------KSPILVATAV----AARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFN 151 (185)
T ss_dssp ----------SSSEEEEEC----------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEEC
T ss_pred ----------CCeEEEEcCh----hhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEc
Confidence 8999999999 99999999999999999999999999999999775 477776653
|
| >2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-27 Score=181.20 Aligned_cols=119 Identities=22% Similarity=0.355 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccC
Q 031433 8 QETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQS 87 (159)
Q Consensus 8 ~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~ 87 (159)
.+.+.+.|..++. . .+.++||||++++.++.+++.|+..+ +.+..+||+|++++|.+++++|+++
T Consensus 39 ~~~K~~~L~~~l~-~-~~~~~lVF~~~~~~~~~l~~~L~~~g-~~~~~lhg~~~~~~R~~~l~~F~~g------------ 103 (191)
T 2p6n_A 39 EEAKMVYLLECLQ-K-TPPPVLIFAEKKADVDAIHEYLLLKG-VEAVAIHGGKDQEERTKAIEAFREG------------ 103 (191)
T ss_dssp GGGHHHHHHHHHT-T-SCSCEEEECSCHHHHHHHHHHHHHHT-CCEEEECTTSCHHHHHHHHHHHHHT------------
T ss_pred hHHHHHHHHHHHH-h-CCCCEEEEECCHHHHHHHHHHHHHcC-CcEEEEeCCCCHHHHHHHHHHHhcC------------
Confidence 3333444444554 2 24689999999999999999999987 7999999999999999999999998
Q ss_pred CCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCC--CCeEEEEEE
Q 031433 88 GDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAA--GTSFSDIIL 156 (159)
Q Consensus 88 ~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~--~g~~i~~v~ 156 (159)
+.+|||||++ +++|+|++++++|||||+|+++..|+||+||++|. .|.+++|++
T Consensus 104 -----------~~~vLvaT~~----~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~ 159 (191)
T 2p6n_A 104 -----------KKDVLVATDV----ASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFIN 159 (191)
T ss_dssp -----------SCSEEEECHH----HHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEEC
T ss_pred -----------CCEEEEEcCc----hhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEc
Confidence 8999999999 99999999999999999999999999999999665 588888764
|
| >3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.8e-27 Score=189.96 Aligned_cols=117 Identities=20% Similarity=0.320 Sum_probs=102.0
Q ss_pred HHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCC
Q 031433 11 LVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDE 90 (159)
Q Consensus 11 l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~ 90 (159)
+.+.|..++. ...+.++||||++++.++.+++.|...+ +.+..+||+|++++|.++++.|++|
T Consensus 15 K~~~L~~ll~-~~~~~~~LVF~~t~~~~~~l~~~L~~~g-~~~~~lhg~l~~~~r~~~~~~f~~g--------------- 77 (300)
T 3i32_A 15 RLEVLSDLLY-VASPDRAMVFTRTKAETEEIAQGLLRLG-HPAQALHGDMSQGERERVMGAFRQG--------------- 77 (300)
T ss_dssp HHHHHHHHHH-HHCCSSEEEECSSHHHHHHHHHHHHTTT-CCEEEECSCCCTHHHHHHHHHHHHT---------------
T ss_pred HHHHHHHHHH-hcCCCCEEEEECCHHHHHHHHHHHHhCC-CCEEEEeCCCCHHHHHHHHHHhhcC---------------
Confidence 3344444444 3337899999999999999999999988 6999999999999999999999998
Q ss_pred CCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCC--CCeEEEEEE
Q 031433 91 SETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAA--GTSFSDIIL 156 (159)
Q Consensus 91 ~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~--~g~~i~~v~ 156 (159)
+.+|||||++ +++|+|++++++|||||+|+++..|+||+||+||. .|.++.|++
T Consensus 78 --------~~~vLVaT~v----a~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~ 133 (300)
T 3i32_A 78 --------EVRVLVATDV----AARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYG 133 (300)
T ss_dssp --------SCCEEEECST----TTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEEC
T ss_pred --------CceEEEEech----hhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeC
Confidence 8999999999 99999999999999999999999999999999775 588887764
|
| >2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.88 E-value=6.4e-28 Score=179.55 Aligned_cols=118 Identities=16% Similarity=0.305 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCC
Q 031433 9 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSG 88 (159)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~ 88 (159)
+.+.++|..++. ...+.++||||++++.++.+++.|+..+ +.+..+||+|++++|.+++++|++|
T Consensus 15 ~~k~~~l~~ll~-~~~~~~~iVF~~~~~~~~~l~~~L~~~~-~~~~~~~g~~~~~~r~~~~~~f~~g------------- 79 (170)
T 2yjt_D 15 EHKTALLVHLLK-QPEATRSIVFVRKRERVHELANWLREAG-INNCYLEGEMVQGKRNEAIKRLTEG------------- 79 (170)
Confidence 445555555655 4456899999999999999999999987 6999999999999999999999998
Q ss_pred CCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCC--CCeEEEEE
Q 031433 89 DESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAA--GTSFSDII 155 (159)
Q Consensus 89 ~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~--~g~~i~~v 155 (159)
+.+|||||++ +++|+|+|++++||+||+|+++..|+||+||++|. .|.++.|+
T Consensus 80 ----------~~~vLvaT~~----~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~ 134 (170)
T 2yjt_D 80 ----------RVNVLVATDV----AARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLV 134 (170)
Confidence 8999999999 99999999999999999999999999999999665 46666654
|
| >2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.1e-25 Score=187.55 Aligned_cols=103 Identities=20% Similarity=0.341 Sum_probs=96.7
Q ss_pred CcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEEEE
Q 031433 26 LPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVV 105 (159)
Q Consensus 26 ~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLV~ 105 (159)
.++||||++++.++.+++.|++.+ +.+..+||++++++|.+++++|++| +.+||||
T Consensus 301 ~~~lVF~~t~~~a~~l~~~L~~~~-~~~~~lhg~~~~~~R~~~l~~F~~g-----------------------~~~vLva 356 (434)
T 2db3_A 301 DGTIVFVETKRGADFLASFLSEKE-FPTTSIHGDRLQSQREQALRDFKNG-----------------------SMKVLIA 356 (434)
T ss_dssp TTEEEECSSHHHHHHHHHHHHHTT-CCEEEESTTSCHHHHHHHHHHHHTS-----------------------SCSEEEE
T ss_pred CCEEEEEeCcHHHHHHHHHHHhCC-CCEEEEeCCCCHHHHHHHHHHHHcC-----------------------CCcEEEE
Confidence 459999999999999999999998 6999999999999999999999998 8999999
Q ss_pred ecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCC--CCeEEEEEE
Q 031433 106 TDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAA--GTSFSDIIL 156 (159)
Q Consensus 106 Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~--~g~~i~~v~ 156 (159)
|++ ++||+|++++++|||||+|+++++|+||+||+||. .|.+++|++
T Consensus 357 T~v----~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~ 405 (434)
T 2db3_A 357 TSV----ASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFD 405 (434)
T ss_dssp CGG----GTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEEC
T ss_pred chh----hhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEe
Confidence 999 99999999999999999999999999999999665 578887764
|
| >2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.3e-24 Score=179.30 Aligned_cols=117 Identities=20% Similarity=0.309 Sum_probs=102.3
Q ss_pred HHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCC
Q 031433 12 VELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDES 91 (159)
Q Consensus 12 ~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~ 91 (159)
.+.+..++.....+.++||||++++.++.+++.|.+.+ +.+..+||++++++|.+++++|+++
T Consensus 263 ~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~-~~~~~~h~~~~~~~r~~~~~~f~~g---------------- 325 (417)
T 2i4i_A 263 RSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEG-YACTSIHGDRSQRDREEALHQFRSG---------------- 325 (417)
T ss_dssp HHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTT-CCEEEECTTSCHHHHHHHHHHHHHT----------------
T ss_pred HHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCC-CCeeEecCCCCHHHHHHHHHHHHcC----------------
Confidence 33344455434567899999999999999999999998 6999999999999999999999998
Q ss_pred CCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCCC--CeEEEEEE
Q 031433 92 ETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAG--TSFSDIIL 156 (159)
Q Consensus 92 ~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~~--g~~i~~v~ 156 (159)
+.+|||||++ +++|+|+|++++||+||+|+++..|+||+||++|.+ |.++.|++
T Consensus 326 -------~~~vlvaT~~----~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~ 381 (417)
T 2i4i_A 326 -------KSPILVATAV----AARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFN 381 (417)
T ss_dssp -------SSCEEEECHH----HHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEEC
T ss_pred -------CCCEEEECCh----hhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEc
Confidence 8999999999 999999999999999999999999999999997764 67766653
|
| >3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=8.1e-24 Score=172.37 Aligned_cols=120 Identities=21% Similarity=0.356 Sum_probs=106.1
Q ss_pred cHHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhccccccccccccc
Q 031433 7 FQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQ 86 (159)
Q Consensus 7 ~~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~ 86 (159)
......+.+..+.. .....++||||++++.++.+++.|++.+ +.+..+||+|++++|.+++++|++|
T Consensus 226 ~~~~~~~~l~~~~~-~~~~~~~lvf~~~~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~r~~~~~~f~~g----------- 292 (395)
T 3pey_A 226 NEADKFDVLTELYG-LMTIGSSIIFVATKKTANVLYGKLKSEG-HEVSILHGDLQTQERDRLIDDFREG----------- 292 (395)
T ss_dssp SHHHHHHHHHHHHT-TTTSSEEEEECSCHHHHHHHHHHHHHTT-CCCEEECTTSCHHHHHHHHHHHHTT-----------
T ss_pred chHHHHHHHHHHHH-hccCCCEEEEeCCHHHHHHHHHHHHhcC-CcEEEeCCCCCHHHHHHHHHHHHCC-----------
Confidence 34455566666665 5567899999999999999999999998 6999999999999999999999998
Q ss_pred CCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCC------ChhHHHhhhhcccCCC--CeEEEEE
Q 031433 87 SGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPT------KKETYIRRMTTCLAAG--TSFSDII 155 (159)
Q Consensus 87 ~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~------~~~~yi~R~GR~~~~~--g~~i~~v 155 (159)
+.+|||||++ +++|+|+|++++||+||+|+ ++..|+||+||++|.+ |.++.|+
T Consensus 293 ------------~~~vlv~T~~----~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~ 353 (395)
T 3pey_A 293 ------------RSKVLITTNV----LARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFV 353 (395)
T ss_dssp ------------SCCEEEECGG----GSSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEE
T ss_pred ------------CCCEEEECCh----hhcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEE
Confidence 8999999999 99999999999999999999 9999999999997764 5666554
|
| >2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A | Back alignment and structure |
|---|
Probab=99.91 E-value=3.8e-24 Score=176.51 Aligned_cols=105 Identities=24% Similarity=0.452 Sum_probs=97.7
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEE
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMI 103 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL 103 (159)
...++||||++++.++.+++.|++.+ +.+..+||++++++|.+++++|++| +.+||
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~~-~~~~~~h~~~~~~~r~~~~~~f~~g-----------------------~~~vl 330 (410)
T 2j0s_A 275 TITQAVIFCNTKRKVDWLTEKMREAN-FTVSSMHGDMPQKERESIMKEFRSG-----------------------ASRVL 330 (410)
T ss_dssp TSSEEEEECSSHHHHHHHHHHHHHTT-CCCEEECTTSCHHHHHHHHHHHHHT-----------------------SSCEE
T ss_pred CCCcEEEEEcCHHHHHHHHHHHHhCC-CceEEeeCCCCHHHHHHHHHHHHCC-----------------------CCCEE
Confidence 34799999999999999999999998 6999999999999999999999998 89999
Q ss_pred EEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCC--CCeEEEEEE
Q 031433 104 VVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAA--GTSFSDIIL 156 (159)
Q Consensus 104 V~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~--~g~~i~~v~ 156 (159)
|||++ +++|+|+|++++||+||+|+++..|+||+||++|. .|.++.|++
T Consensus 331 v~T~~----~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~ 381 (410)
T 2j0s_A 331 ISTDV----WARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVK 381 (410)
T ss_dssp EECGG----GSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEE
T ss_pred EECCh----hhCcCCcccCCEEEEECCCCCHHHHHHhcccccCCCCceEEEEEec
Confidence 99999 99999999999999999999999999999999664 577777654
|
| >2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.1e-23 Score=184.06 Aligned_cols=116 Identities=19% Similarity=0.334 Sum_probs=102.0
Q ss_pred HHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCC
Q 031433 10 TLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGD 89 (159)
Q Consensus 10 ~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~ 89 (159)
.+..+++ ++.....+.++||||+|++.++.+++.|+..+ +.+..+||+|++++|.+++++|+.+
T Consensus 253 ~~~~l~~-~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g-~~~~~~h~~l~~~~R~~~~~~F~~g-------------- 316 (591)
T 2v1x_A 253 FIEDIVK-LINGRYKGQSGIIYCFSQKDSEQVTVSLQNLG-IHAGAYHANLEPEDKTTVHRKWSAN-------------- 316 (591)
T ss_dssp HHHHHHH-HHTTTTTTCEEEEECSSHHHHHHHHHHHHHTT-CCEEEECTTSCHHHHHHHHHHHHTT--------------
T ss_pred HHHHHHH-HHHHhccCCCeEEEeCcHHHHHHHHHHHHHCC-CCEEEecCCCCHHHHHHHHHHHHcC--------------
Confidence 3344444 44324467899999999999999999999998 7999999999999999999999998
Q ss_pred CCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCCCCeEEEE
Q 031433 90 ESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAGTSFSDI 154 (159)
Q Consensus 90 ~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~~g~~i~~ 154 (159)
+.+|||||++ +++|||+|+|++|||||+|.+++.|+||+||+||.+..+..+
T Consensus 317 ---------~~~VlVAT~a----~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i 368 (591)
T 2v1x_A 317 ---------EIQVVVATVA----FGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCI 368 (591)
T ss_dssp ---------SSSEEEECTT----SCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEE
T ss_pred ---------CCeEEEEech----hhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEE
Confidence 8999999999 999999999999999999999999999999998876444433
|
| >3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A | Back alignment and structure |
|---|
Probab=99.91 E-value=8.7e-24 Score=181.75 Aligned_cols=107 Identities=20% Similarity=0.345 Sum_probs=98.7
Q ss_pred CCCCCcEEEEeCchHHHHHHHHHHhcC---CCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCC
Q 031433 22 RRPGLPMIVCCSSRDELDAVCSAVSNL---ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEH 98 (159)
Q Consensus 22 ~~~~~k~iIF~ns~~~~~~l~~~L~~~---~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (159)
...+.++||||+|++.++.+++.|++. + +.+..+||+|++++|.+++++|+++
T Consensus 336 ~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~-~~v~~~h~~~~~~~R~~~~~~f~~g----------------------- 391 (563)
T 3i5x_A 336 RDSNYKAIIFAPTVKFTSFLCSILKNEFKKD-LPILEFHGKITQNKRTSLVKRFKKD----------------------- 391 (563)
T ss_dssp TTTCCEEEEECSCHHHHHHHHHHHHHHHTTT-SCEEEESTTSCHHHHHHHHHHHHHC-----------------------
T ss_pred cCCCCcEEEEcCcHHHHHHHHHHHHHhccCC-ceEEEecCCCCHHHHHHHHHHHhcC-----------------------
Confidence 466789999999999999999999986 5 6999999999999999999999998
Q ss_pred ceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCCC--CeEEEEEE
Q 031433 99 KSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAG--TSFSDIIL 156 (159)
Q Consensus 99 ~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~~--g~~i~~v~ 156 (159)
+.+|||||++ +++|+|+|++++||+||+|.++..|+||+||++|.+ |.++.|++
T Consensus 392 ~~~vLvaT~~----~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~ 447 (563)
T 3i5x_A 392 ESGILVCTDV----GARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFIC 447 (563)
T ss_dssp SSEEEEECGG----GTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEE
T ss_pred CCCEEEEcch----hhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEc
Confidence 8999999999 999999999999999999999999999999997765 66666653
|
| >3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B | Back alignment and structure |
|---|
Probab=99.91 E-value=8.3e-24 Score=173.66 Aligned_cols=118 Identities=19% Similarity=0.326 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCC
Q 031433 9 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSG 88 (159)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~ 88 (159)
+.+...+..+.. .....++||||++++.++.+++.|++.+ +.+..+||+|++++|.+++++|++|
T Consensus 251 ~~~~~~l~~~~~-~~~~~~~lvf~~~~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~r~~~~~~f~~g------------- 315 (412)
T 3fht_A 251 DEKFQALCNLYG-AITIAQAMIFCHTRKTASWLAAELSKEG-HQVALLSGEMMVEQRAAVIERFREG------------- 315 (412)
T ss_dssp HHHHHHHHHHHH-HHSSSEEEEECSSHHHHHHHHHHHHHTT-CCCEEECTTSCHHHHHHHHHHHHTT-------------
T ss_pred HHHHHHHHHHHh-hcCCCCEEEEeCCHHHHHHHHHHHHhCC-CeEEEecCCCCHHHHHHHHHHHHCC-------------
Confidence 334444444444 3446799999999999999999999997 6999999999999999999999998
Q ss_pred CCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCC------ChhHHHhhhhcccCC--CCeEEEEE
Q 031433 89 DESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPT------KKETYIRRMTTCLAA--GTSFSDII 155 (159)
Q Consensus 89 ~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~------~~~~yi~R~GR~~~~--~g~~i~~v 155 (159)
+.+|||||++ +++|+|+|++++||+||+|+ +...|+||+||++|. .|.++.++
T Consensus 316 ----------~~~vlv~T~~----~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~ 376 (412)
T 3fht_A 316 ----------KEKVLVTTNV----CARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMV 376 (412)
T ss_dssp ----------SCSEEEECGG----GTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEE
T ss_pred ----------CCcEEEEcCc----cccCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEE
Confidence 8999999999 99999999999999999995 668999999999775 46666655
|
| >1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.6e-23 Score=180.49 Aligned_cols=104 Identities=20% Similarity=0.383 Sum_probs=96.8
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeE
Q 031433 23 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHM 102 (159)
Q Consensus 23 ~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 102 (159)
..++++||||+|++.++.+++.|++.+ +.+..+||+|++++|.+++++|+++ +.+|
T Consensus 234 ~~~~~~IVf~~sr~~~e~l~~~L~~~g-~~~~~~h~~l~~~~R~~~~~~f~~g-----------------------~~~v 289 (523)
T 1oyw_A 234 QRGKSGIIYCNSRAKVEDTAARLQSKG-ISAAAYHAGLENNVRADVQEKFQRD-----------------------DLQI 289 (523)
T ss_dssp TTTCCEEEECSSHHHHHHHHHHHHHTT-CCEEEECTTSCHHHHHHHHHHHHTT-----------------------SCSE
T ss_pred cCCCcEEEEeCCHHHHHHHHHHHHHCC-CCEEEecCCCCHHHHHHHHHHHHcC-----------------------CCeE
Confidence 356899999999999999999999998 7999999999999999999999998 8999
Q ss_pred EEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCCC--CeEEEE
Q 031433 103 IVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAG--TSFSDI 154 (159)
Q Consensus 103 LV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~~--g~~i~~ 154 (159)
||||++ +++|+|+|+|++|||||+|++++.|+||+||+||.+ |.++.|
T Consensus 290 lVaT~a----~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~ 339 (523)
T 1oyw_A 290 VVATVA----FGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLF 339 (523)
T ss_dssp EEECTT----SCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEE
T ss_pred EEEech----hhCCCCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEE
Confidence 999999 999999999999999999999999999999998765 444444
|
| >3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.4e-23 Score=181.88 Aligned_cols=107 Identities=20% Similarity=0.345 Sum_probs=98.4
Q ss_pred CCCCCcEEEEeCchHHHHHHHHHHhcC---CCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCC
Q 031433 22 RRPGLPMIVCCSSRDELDAVCSAVSNL---ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEH 98 (159)
Q Consensus 22 ~~~~~k~iIF~ns~~~~~~l~~~L~~~---~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (159)
...+.++||||+|++.++.+++.|++. + +.+..+||+|++++|.+++++|+++
T Consensus 285 ~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~-~~v~~~hg~~~~~~R~~~~~~F~~g----------------------- 340 (579)
T 3sqw_A 285 RDSNYKAIIFAPTVKFTSFLCSILKNEFKKD-LPILEFHGKITQNKRTSLVKRFKKD----------------------- 340 (579)
T ss_dssp TTTCCEEEEECSSHHHHHHHHHHHHHHHTTT-SCEEEESTTSCHHHHHHHHHHHHHC-----------------------
T ss_pred cCCCCcEEEECCcHHHHHHHHHHHHHhhcCC-CcEEEecCCCCHHHHHHHHHHhhcC-----------------------
Confidence 466789999999999999999999976 5 6999999999999999999999998
Q ss_pred ceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCCC--CeEEEEEE
Q 031433 99 KSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAG--TSFSDIIL 156 (159)
Q Consensus 99 ~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~~--g~~i~~v~ 156 (159)
+.+|||||++ +++|+|+|++++||+||+|.++..|+||+||++|.+ |.++.|++
T Consensus 341 ~~~vLVaT~~----~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~ 396 (579)
T 3sqw_A 341 ESGILVCTDV----GARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFIC 396 (579)
T ss_dssp SSEEEEECGG----GTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEE
T ss_pred CCeEEEEcch----hhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEc
Confidence 8999999999 999999999999999999999999999999997765 66666553
|
| >1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.6e-23 Score=172.12 Aligned_cols=115 Identities=23% Similarity=0.433 Sum_probs=101.8
Q ss_pred HHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCC
Q 031433 12 VELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDES 91 (159)
Q Consensus 12 ~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~ 91 (159)
...+..++. .....++||||++++.++.+++.|++.+ +.+..+||+|++++|..+++.|+++
T Consensus 246 ~~~l~~~~~-~~~~~~~lVf~~~~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~r~~~~~~f~~g---------------- 307 (400)
T 1s2m_A 246 LHCLNTLFS-KLQINQAIIFCNSTNRVELLAKKITDLG-YSCYYSHARMKQQERNKVFHEFRQG---------------- 307 (400)
T ss_dssp HHHHHHHHH-HSCCSEEEEECSSHHHHHHHHHHHHHHT-CCEEEECTTSCHHHHHHHHHHHHTT----------------
T ss_pred HHHHHHHHh-hcCCCcEEEEEecHHHHHHHHHHHHhcC-CCeEEecCCCCHHHHHHHHHHHhcC----------------
Confidence 333444444 3456799999999999999999999988 6999999999999999999999998
Q ss_pred CCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCCC--CeEEEEE
Q 031433 92 ETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAG--TSFSDII 155 (159)
Q Consensus 92 ~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~~--g~~i~~v 155 (159)
+.+|||||++ +++|+|+|++++||+||+|+++..|+||+||++|.+ |.++.|+
T Consensus 308 -------~~~vLv~T~~----~~~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~ 362 (400)
T 1s2m_A 308 -------KVRTLVCSDL----LTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLI 362 (400)
T ss_dssp -------SSSEEEESSC----SSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEE
T ss_pred -------CCcEEEEcCc----cccCCCccCCCEEEEeCCCCCHHHHHHhcchhcCCCCCceEEEEe
Confidence 8999999999 999999999999999999999999999999997764 6666665
|
| >4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=4.6e-24 Score=187.45 Aligned_cols=120 Identities=14% Similarity=0.198 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcC------CCccEEEeecC--------CCHHHHHHHHHHHh
Q 031433 8 QETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL------ADISFSSLHSD--------LAETERTLILEEFR 73 (159)
Q Consensus 8 ~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~------~~i~~~~l~~~--------~~~~~R~~~l~~F~ 73 (159)
.+.+.++|.........+.++||||+++++++.+++.|++. | +.+..+||+ |++++|.+++++|+
T Consensus 383 ~~~L~~~L~~~~~~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g-~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~ 461 (699)
T 4gl2_A 383 LTKLRNTIMEQYTRTEESARGIIFTKTRQSAYALSQWITENEKFAEVG-VKAHHLIGAGHSSEFKPMTQNEQKEVISKFR 461 (699)
T ss_dssp SSCSHHHHHHHHHHSSSCCCEEEECSCHHHHHHHHHHHHSSCSCC------CEECCCSCCCTTCCCCCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCCCCCcEEEEECcHHHHHHHHHHHHhCccccccC-cceEEEECCCCccCCCCCCHHHHHHHHHHHh
Confidence 34455566554442222799999999999999999999987 6 799999999 99999999999999
Q ss_pred cccccccccccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCCCCeEEE
Q 031433 74 HTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAGTSFSD 153 (159)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~~g~~i~ 153 (159)
+| +.+|||||++ +++|||+|+|++|||||+|+|+..|+||+||+ |++|.++.
T Consensus 462 ~g-----------------------~~~VLVaT~~----~~~GIDip~v~~VI~~d~p~s~~~~~Qr~GRA-rr~g~~~~ 513 (699)
T 4gl2_A 462 TG-----------------------KINLLIATTV----AEEGLDIKECNIVIRYGLVTNEIAMVQARGRA-RADESTYV 513 (699)
T ss_dssp C--------------------------CCSEEECS----CCTTSCCCSCCCCEEESCCCCHHHHHHHHTTS-CSSSCEEE
T ss_pred cC-----------------------CCcEEEEccc----cccCCccccCCEEEEeCCCCCHHHHHHHcCCC-CCCCceEE
Confidence 98 8999999999 99999999999999999999999999999996 55566666
Q ss_pred EEE
Q 031433 154 IIL 156 (159)
Q Consensus 154 ~v~ 156 (159)
+++
T Consensus 514 l~~ 516 (699)
T 4gl2_A 514 LVA 516 (699)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
|
| >3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.3e-24 Score=182.92 Aligned_cols=122 Identities=15% Similarity=0.147 Sum_probs=81.6
Q ss_pred cHHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCC-----------CccEEEeecCCCHHHHHHHHHHHhc-
Q 031433 7 FQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLA-----------DISFSSLHSDLAETERTLILEEFRH- 74 (159)
Q Consensus 7 ~~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~-----------~i~~~~l~~~~~~~~R~~~l~~F~~- 74 (159)
+.+.+.++|..+.. ..++.++||||+++++++.+++.|+..+ +.....+||+|++++|.+++++|++
T Consensus 372 k~~~l~~~l~~~~~-~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~ 450 (555)
T 3tbk_A 372 KLRDLYLVLQEEYH-LKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRAS 450 (555)
T ss_dssp HHHHHHHHHHHHHH-HCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC-------------------------
T ss_pred HHHHHHHHHHHHhc-cCCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcC
Confidence 44566666666554 4567999999999999999999999763 1244555669999999999999999
Q ss_pred ccccccccccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCCCCeEEEE
Q 031433 75 TAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAGTSFSDI 154 (159)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~~g~~i~~ 154 (159)
| +.+|||||++ +++|+|+|+|++|||||+|+++..|+||+||+..++|.++.|
T Consensus 451 g-----------------------~~~vLvaT~~----~~~GlDlp~v~~VI~~d~p~s~~~~~Qr~GRgR~~~g~~~~l 503 (555)
T 3tbk_A 451 G-----------------------DNNILIATSV----ADEGIDIAECNLVILYEYVGNVIKMIQTRGRGRARDSKCFLL 503 (555)
T ss_dssp ------------------------CCSEEEECCC----TTCCEETTSCSEEEEESCCSSCCCEECSSCCCTTTSCEEEEE
T ss_pred C-----------------------CeeEEEEcch----hhcCCccccCCEEEEeCCCCCHHHHHHhcCcCcCCCceEEEE
Confidence 7 8999999999 999999999999999999999999999999943345777776
Q ss_pred EE
Q 031433 155 IL 156 (159)
Q Consensus 155 v~ 156 (159)
++
T Consensus 504 ~~ 505 (555)
T 3tbk_A 504 TS 505 (555)
T ss_dssp ES
T ss_pred Ec
Confidence 53
|
| >1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A | Back alignment and structure |
|---|
Probab=99.90 E-value=2.7e-23 Score=169.76 Aligned_cols=106 Identities=14% Similarity=0.245 Sum_probs=98.7
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeE
Q 031433 23 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHM 102 (159)
Q Consensus 23 ~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 102 (159)
..+.++||||++++.++.+++.|.+.+ +.+..+||++++++|.+++++|+++ +.+|
T Consensus 248 ~~~~~~lvf~~~~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~r~~~~~~f~~~-----------------------~~~v 303 (391)
T 1xti_A 248 LEFNQVVIFVKSVQRCIALAQLLVEQN-FPAIAIHRGMPQEERLSRYQQFKDF-----------------------QRRI 303 (391)
T ss_dssp SCCSEEEEECSCHHHHHHHHHHHHHTT-CCEEEECTTSCHHHHHHHHHHHHTT-----------------------CCSE
T ss_pred cCCCcEEEEeCcHHHHHHHHHHHHhCC-CcEEEEeCCCCHHHHHHHHHHHhcC-----------------------CCcE
Confidence 356899999999999999999999998 6999999999999999999999998 8999
Q ss_pred EEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCC--CCeEEEEEE
Q 031433 103 IVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAA--GTSFSDIIL 156 (159)
Q Consensus 103 LV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~--~g~~i~~v~ 156 (159)
||||++ +++|+|+|++++||+||+|+++..|+||+||++|. .|.++.+++
T Consensus 304 lv~T~~----~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~ 355 (391)
T 1xti_A 304 LVATNL----FGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVS 355 (391)
T ss_dssp EEESCC----CSSCBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEEC
T ss_pred EEECCh----hhcCCCcccCCEEEEeCCCCCHHHHHHhcccccCCCCceEEEEEEc
Confidence 999999 99999999999999999999999999999999775 477777653
|
| >4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=5e-24 Score=181.34 Aligned_cols=119 Identities=13% Similarity=0.191 Sum_probs=61.7
Q ss_pred cHHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcC------------CCccEEEeecCCCHHHHHHHHHHHhc
Q 031433 7 FQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL------------ADISFSSLHSDLAETERTLILEEFRH 74 (159)
Q Consensus 7 ~~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~------------~~i~~~~l~~~~~~~~R~~~l~~F~~ 74 (159)
+.+.+.++|..... ...+.++||||+++++++.+++.|++. | .....+||+|++++|.+++++|++
T Consensus 373 K~~~L~~~l~~~~~-~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~R~~~~~~F~~ 450 (556)
T 4a2p_A 373 KLEELVCILDDAYR-YNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMG-RGRRDQTTGMTLPSQKGVLDAFKT 450 (556)
T ss_dssp HHHHHHHHHHHHHH-HCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC----------------------------
T ss_pred HHHHHHHHHHHHhc-CCCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEc-cCCcccccccCHHHHHHHHHHhcc
Confidence 34455555554443 356789999999999999999999876 3 355666888999999999999999
Q ss_pred -ccccccccccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCC-CCeEE
Q 031433 75 -TAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAA-GTSFS 152 (159)
Q Consensus 75 -~~~~~~~~~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~-~g~~i 152 (159)
| +.+|||||++ +++|+|+|+|++|||||+|+++..|+||+|| ||. .|.++
T Consensus 451 ~g-----------------------~~~vLvaT~~----~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-gR~~~g~~~ 502 (556)
T 4a2p_A 451 SK-----------------------DNRLLIATSV----ADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRAAGSKCI 502 (556)
T ss_dssp --------------------------CCEEEEEC---------------CEEEEETCCSCHHHHHHC---------CCEE
T ss_pred cC-----------------------ceEEEEEcCc----hhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCCCCceEE
Confidence 7 8999999999 9999999999999999999999999999999 654 46676
Q ss_pred EEE
Q 031433 153 DII 155 (159)
Q Consensus 153 ~~v 155 (159)
.|+
T Consensus 503 ~l~ 505 (556)
T 4a2p_A 503 LVT 505 (556)
T ss_dssp EEE
T ss_pred EEE
Confidence 665
|
| >3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=1e-23 Score=173.51 Aligned_cols=117 Identities=23% Similarity=0.393 Sum_probs=92.9
Q ss_pred HHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCC
Q 031433 11 LVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDE 90 (159)
Q Consensus 11 l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~ 90 (159)
+.+.+..+.. .....++||||++++.++.+++.|.+.+ +.+..+||+|++++|.+++++|+++
T Consensus 267 ~~~~l~~~~~-~~~~~~~lvf~~~~~~~~~l~~~l~~~~-~~~~~~h~~~~~~~r~~~~~~f~~g--------------- 329 (414)
T 3eiq_A 267 KLDTLCDLYE-TLTITQAVIFINTRRKVDWLTEKMHARD-FTVSAMHGDMDQKERDVIMREFRSG--------------- 329 (414)
T ss_dssp HHHHHHHHHH-SSCCSSCEEECSCHHHHHHHHHHHHTTT-CCCEEC---CHHHHHHHHHHHHSCC---------------
T ss_pred HHHHHHHHHH-hCCCCcEEEEeCCHHHHHHHHHHHHhcC-CeEEEecCCCCHHHHHHHHHHHHcC---------------
Confidence 3444444554 4566899999999999999999999998 6999999999999999999999998
Q ss_pred CCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCC--CCeEEEEEE
Q 031433 91 SETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAA--GTSFSDIIL 156 (159)
Q Consensus 91 ~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~--~g~~i~~v~ 156 (159)
+.+|||||++ +++|+|+|++++||+||+|+++..|+||+||++|. .|.++.|++
T Consensus 330 --------~~~vlv~T~~----~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~ 385 (414)
T 3eiq_A 330 --------SSRVLITTDL----LARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVT 385 (414)
T ss_dssp -----------CEEECSS----CC--CCGGGCSCEEESSCCSSTHHHHHHSCCC-------CEEEEEC
T ss_pred --------CCcEEEECCc----cccCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCceEEEEEc
Confidence 8999999999 99999999999999999999999999999999775 477777653
|
| >1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=99.90 E-value=6.1e-23 Score=165.68 Aligned_cols=116 Identities=22% Similarity=0.442 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCC
Q 031433 9 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSG 88 (159)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~ 88 (159)
+++..+.+ ++. ..+.++||||++++.++.+++.|++.+ +.+..+||+++.++|.++++.|+++
T Consensus 225 ~~~~~l~~-~l~--~~~~~~lvf~~~~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~r~~~~~~f~~~------------- 287 (367)
T 1hv8_A 225 ERFEALCR-LLK--NKEFYGLVFCKTKRDTKELASMLRDIG-FKAGAIHGDLSQSQREKVIRLFKQK------------- 287 (367)
T ss_dssp GHHHHHHH-HHC--STTCCEEEECSSHHHHHHHHHHHHHTT-CCEEEECSSSCHHHHHHHHHHHHTT-------------
T ss_pred HHHHHHHH-HHh--cCCCcEEEEECCHHHHHHHHHHHHhcC-CCeEEeeCCCCHHHHHHHHHHHHcC-------------
Confidence 33334444 443 456899999999999999999999998 6999999999999999999999998
Q ss_pred CCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCC--CCeEEEEE
Q 031433 89 DESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAA--GTSFSDII 155 (159)
Q Consensus 89 ~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~--~g~~i~~v 155 (159)
+.+|||||++ +++|+|+|++++||+||+|+++..|+||+||++|. .|.++.++
T Consensus 288 ----------~~~vlv~T~~----~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~ 342 (367)
T 1hv8_A 288 ----------KIRILIATDV----MSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISII 342 (367)
T ss_dssp ----------SSSEEEECTT----HHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEE
T ss_pred ----------CCeEEEECCh----hhcCCCcccCCEEEEecCCCCHHHhhhcccccccCCCccEEEEEE
Confidence 8999999999 99999999999999999999999999999999775 47777765
|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=99.89 E-value=3.4e-23 Score=171.24 Aligned_cols=120 Identities=18% Similarity=0.222 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeec--------CCCHHHHHHHHHHHhcccccc
Q 031433 8 QETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHS--------DLAETERTLILEEFRHTAMKW 79 (159)
Q Consensus 8 ~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~--------~~~~~~R~~~l~~F~~~~~~~ 79 (159)
.+.+.+++..... ...+.++||||++++.++.+++.|...+ +.+..+|| +|+.++|.+++++|+++
T Consensus 345 ~~~l~~~l~~~~~-~~~~~k~lVF~~~~~~~~~l~~~L~~~~-~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~---- 418 (494)
T 1wp9_A 345 MDKLKEIIREQLQ-RKQNSKIIVFTNYRETAKKIVNELVKDG-IKAKRFVGQASKENDRGLSQREQKLILDEFARG---- 418 (494)
T ss_dssp HHHHHHHHHHHHH-HCTTCCEEEECSCHHHHHHHHHHHHHTT-CCEEEECCSSCC-------CCHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHhc-cCCCCeEEEEEccHHHHHHHHHHHHHcC-CCcEEEeccccccccccCCHHHHHHHHHHHhcC----
Confidence 3455555555443 2567999999999999999999999997 79999999 99999999999999998
Q ss_pred cccccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCCC-CeEEEEEE
Q 031433 80 NQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAG-TSFSDIIL 156 (159)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~~-g~~i~~v~ 156 (159)
+.+|||||++ +++|+|+|++++||+||+|+++..|+||+||++|.+ |.++.|++
T Consensus 419 -------------------~~~vLv~T~~----~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~g~~~~l~~ 473 (494)
T 1wp9_A 419 -------------------EFNVLVATSV----GEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMPGRVIILMA 473 (494)
T ss_dssp -------------------SCSEEEECGG----GGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCCSEEEEEEE
T ss_pred -------------------CceEEEECCc----cccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCCceEEEEEe
Confidence 7999999999 999999999999999999999999999999997654 66665553
|
| >2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=6.3e-23 Score=180.16 Aligned_cols=118 Identities=16% Similarity=0.185 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCC---ccEEEe--------ecCCCHHHHHHHHHHHhc-cc
Q 031433 9 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLAD---ISFSSL--------HSDLAETERTLILEEFRH-TA 76 (159)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~---i~~~~l--------~~~~~~~~R~~~l~~F~~-~~ 76 (159)
+.+.+++..... ..++.++||||+++++++.+++.|+..+. +.+..+ ||+|++++|.+++++|++ |
T Consensus 383 ~~L~~ll~~~~~-~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g- 460 (696)
T 2ykg_A 383 EDLCFILQEEYH-LNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASG- 460 (696)
T ss_dssp HHHHHHHHHHHT-TCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC------------------------------
T ss_pred HHHHHHHHHHhc-cCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcC-
Confidence 444455544433 34678999999999999999999998752 578888 559999999999999998 8
Q ss_pred ccccccccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCCC-CeEEEEE
Q 031433 77 MKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAG-TSFSDII 155 (159)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~~-g~~i~~v 155 (159)
+.+|||||++ +++|||+|+|++|||||+|++++.|+||+|| ||.. |.++.++
T Consensus 461 ----------------------~~~vLVaT~v----~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~~~g~~~~l~ 513 (696)
T 2ykg_A 461 ----------------------DHNILIATSV----ADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSKCFLLT 513 (696)
T ss_dssp ----------------------CCSCSEEEES----SCCC---CCCSEEEEESCC--CCCC----------CCCEEEEEE
T ss_pred ----------------------CccEEEEech----hhcCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcCCCceEEEEe
Confidence 8999999999 9999999999999999999999999999999 7754 5555443
|
| >2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B* | Back alignment and structure |
|---|
Probab=99.87 E-value=5.3e-22 Score=175.41 Aligned_cols=117 Identities=14% Similarity=0.183 Sum_probs=102.9
Q ss_pred HHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCC
Q 031433 11 LVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDE 90 (159)
Q Consensus 11 l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~ 90 (159)
+..++..+......+.++||||+|++.++.+++.|++.| +.+..+||++++.+|.+++++|+.|
T Consensus 431 ~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~g-i~~~~lh~~~~~~~R~~~l~~f~~g--------------- 494 (661)
T 2d7d_A 431 IDDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEIG-IKVNYLHSEIKTLERIEIIRDLRLG--------------- 494 (661)
T ss_dssp HHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHTT-CCEEEECTTCCHHHHHHHHHHHHHT---------------
T ss_pred HHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHhcC-CCeEEEeCCCCHHHHHHHHHHHhcC---------------
Confidence 334444443323356899999999999999999999998 7999999999999999999999998
Q ss_pred CCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccC-----CCChhHHHhhhhcccCC-CCeEEEEE
Q 031433 91 SETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYEL-----PTKKETYIRRMTTCLAA-GTSFSDII 155 (159)
Q Consensus 91 ~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~-----P~~~~~yi~R~GR~~~~-~g~~i~~v 155 (159)
+.+|||+|++ +++|+|+|++++||+||. |.+..+|+||+||+||. .|.++.|+
T Consensus 495 --------~~~VLVaT~~----l~~GlDip~v~lVi~~d~d~~G~p~s~~~~iQr~GRagR~~~G~~i~~~ 553 (661)
T 2d7d_A 495 --------KYDVLVGINL----LREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNAEGRVIMYA 553 (661)
T ss_dssp --------SCSEEEESCC----CSTTCCCTTEEEEEETTTTCCTTTTSHHHHHHHHHTTTTSTTCEEEEEC
T ss_pred --------CeEEEEecch----hhCCcccCCCCEEEEeCcccccCCCCHHHHHHHhCcccCCCCCEEEEEE
Confidence 8999999999 999999999999999997 99999999999999775 58887765
|
| >4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} | Back alignment and structure |
|---|
Probab=99.87 E-value=2e-22 Score=180.65 Aligned_cols=120 Identities=13% Similarity=0.184 Sum_probs=68.0
Q ss_pred cHHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcC------------CCccEEEeecCCCHHHHHHHHHHHhc
Q 031433 7 FQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL------------ADISFSSLHSDLAETERTLILEEFRH 74 (159)
Q Consensus 7 ~~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~------------~~i~~~~l~~~~~~~~R~~~l~~F~~ 74 (159)
+.+.|.++|...+. ...+.++||||+++++++.+++.|++. | .....+||+|++++|.+++++|++
T Consensus 614 K~~~L~~lL~~~~~-~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G-~~~~~~hg~~~~~eR~~~l~~F~~ 691 (797)
T 4a2q_A 614 KLEELVCILDDAYR-YNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMG-RGRRDQTTGMTLPSQKGVLDAFKT 691 (797)
T ss_dssp HHHHHHHHHHHHHH-HCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC---------------------------
T ss_pred HHHHHHHHHHHHhc-cCCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEe-cCCcccCCCCCHHHHHHHHHHhhc
Confidence 44555566655443 356799999999999999999999874 3 356677899999999999999999
Q ss_pred -ccccccccccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCC-CCeEE
Q 031433 75 -TAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAA-GTSFS 152 (159)
Q Consensus 75 -~~~~~~~~~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~-~g~~i 152 (159)
| +.+|||||++ +++|||+|+|++|||||+|+++..|+||+|| ||. .|.++
T Consensus 692 ~g-----------------------~~~vLVaT~~----~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR-GR~~~g~~i 743 (797)
T 4a2q_A 692 SK-----------------------DNRLLIATSV----ADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRAAGSKCI 743 (797)
T ss_dssp -------------------------CCSEEEEECC-----------CCCSEEEEESCCSCHHHHHTC--------CCCEE
T ss_pred cC-----------------------CceEEEEcCc----hhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCCCCceEE
Confidence 7 8999999999 9999999999999999999999999999999 654 57777
Q ss_pred EEEE
Q 031433 153 DIIL 156 (159)
Q Consensus 153 ~~v~ 156 (159)
.|++
T Consensus 744 ~l~~ 747 (797)
T 4a2q_A 744 LVTS 747 (797)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 7653
|
| >1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A | Back alignment and structure |
|---|
Probab=99.87 E-value=3.3e-22 Score=179.37 Aligned_cols=122 Identities=12% Similarity=0.097 Sum_probs=99.8
Q ss_pred CcHHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccc
Q 031433 6 TFQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTE 85 (159)
Q Consensus 6 ~~~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~ 85 (159)
+..++...+++.+......+.++||||+|++.++.|++.|...| +.+.+|||++.+++|..+.++|+.+
T Consensus 413 ~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~g-i~~~vLhg~~~~rEr~ii~~ag~~g---------- 481 (844)
T 1tf5_A 413 TMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKG-IPHQVLNAKNHEREAQIIEEAGQKG---------- 481 (844)
T ss_dssp SHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTT-CCCEEECSSCHHHHHHHHTTTTSTT----------
T ss_pred CHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCC-CCEEEeeCCccHHHHHHHHHcCCCC----------
Confidence 34455545554443212346899999999999999999999998 7999999999888887666555543
Q ss_pred cCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCC--------CCCeEEEccCCCChhHHHhhhhcccCC--CCeEEEEE
Q 031433 86 QSGDESETGKDEHKSHMIVVTDACLPLLSSGESAI--------SARVLINYELPTKKETYIRRMTTCLAA--GTSFSDII 155 (159)
Q Consensus 86 ~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~--------~v~~VI~~d~P~~~~~yi~R~GR~~~~--~g~~i~~v 155 (159)
.|+||||+ ++||+|++ ++.+|||||+|.+...|+||+||+||. +|.+++|+
T Consensus 482 ---------------~VlIATdm----AgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~~v 542 (844)
T 1tf5_A 482 ---------------AVTIATNM----AGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYL 542 (844)
T ss_dssp ---------------CEEEEETT----SSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEE
T ss_pred ---------------eEEEeCCc----cccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEEEEe
Confidence 69999999 99999999 788999999999999999999999664 58888887
Q ss_pred Ee
Q 031433 156 LL 157 (159)
Q Consensus 156 ~~ 157 (159)
++
T Consensus 543 s~ 544 (844)
T 1tf5_A 543 SM 544 (844)
T ss_dssp ET
T ss_pred cH
Confidence 63
|
| >3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1e-21 Score=174.13 Aligned_cols=125 Identities=14% Similarity=0.124 Sum_probs=101.8
Q ss_pred eecCcHHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhccccccccc
Q 031433 3 VSFTFQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQK 82 (159)
Q Consensus 3 v~~~~~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~ 82 (159)
++.+..++...+++.+......+.++||||+|++.++.|++.|.+.| +.+.++||+..+++|..+.++|+.+
T Consensus 452 vy~t~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~G-i~~~vLhgkq~~rE~~ii~~ag~~g------- 523 (822)
T 3jux_A 452 VFRTQKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKG-IPHQVLNAKYHEKEAEIVAKAGQKG------- 523 (822)
T ss_dssp EESSHHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTT-CCCEEECSCHHHHHHHHHHHHHSTT-------
T ss_pred EEecHHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCC-CCEEEeeCCchHHHHHHHHhCCCCC-------
Confidence 44555666666666554422357899999999999999999999998 7999999996666665555555554
Q ss_pred ccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCC--------CCCeEEEccCCCChhHHHhhhhcccCC--CCeEE
Q 031433 83 VTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAI--------SARVLINYELPTKKETYIRRMTTCLAA--GTSFS 152 (159)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~--------~v~~VI~~d~P~~~~~yi~R~GR~~~~--~g~~i 152 (159)
.|+||||+ ++||+|++ +..+|||||+|.+...|+||+||+||. +|.++
T Consensus 524 ------------------~VtVATdm----AgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~ 581 (822)
T 3jux_A 524 ------------------MVTIATNM----AGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESI 581 (822)
T ss_dssp ------------------CEEEEETT----TTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEE
T ss_pred ------------------eEEEEcch----hhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEE
Confidence 59999999 99999998 667999999999999999999999665 58888
Q ss_pred EEEEe
Q 031433 153 DIILL 157 (159)
Q Consensus 153 ~~v~~ 157 (159)
+|+++
T Consensus 582 ~fvsl 586 (822)
T 3jux_A 582 FFLSL 586 (822)
T ss_dssp EEEET
T ss_pred EEech
Confidence 88864
|
| >3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.4e-21 Score=162.18 Aligned_cols=109 Identities=17% Similarity=0.212 Sum_probs=93.7
Q ss_pred cHHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEE-EeecCCCHHHHHHHHHHHhcccccccccccc
Q 031433 7 FQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFS-SLHSDLAETERTLILEEFRHTAMKWNQKVTE 85 (159)
Q Consensus 7 ~~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~-~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~ 85 (159)
+.+.+.++++. .+.++||||++++.++.+++.|++.+ +.+. .+||+ +|. +++|++|
T Consensus 240 ~~~~l~~~l~~------~~~~~lVF~~~~~~~~~l~~~L~~~~-~~~~~~~h~~----~r~--~~~f~~g---------- 296 (414)
T 3oiy_A 240 SKEKLVELLEI------FRDGILIFAQTEEEGKELYEYLKRFK-FNVGETWSEF----EKN--FEDFKVG---------- 296 (414)
T ss_dssp CHHHHHHHHHH------HCSSEEEEESSHHHHHHHHHHHHHTT-CCEEESSSCH----HHH--HHHHHTT----------
T ss_pred HHHHHHHHHHH------cCCCEEEEECCHHHHHHHHHHHHHcC-CceehhhcCc----chH--HHHHhCC----------
Confidence 44556666654 13899999999999999999999998 6888 99985 444 9999998
Q ss_pred cCCCCCCCCCCCCceeEEEE----ecCCCCCCcCCCCCCC-CCeEEEccCC--CChhHHHhhhhcccCC------CCeEE
Q 031433 86 QSGDESETGKDEHKSHMIVV----TDACLPLLSSGESAIS-ARVLINYELP--TKKETYIRRMTTCLAA------GTSFS 152 (159)
Q Consensus 86 ~~~~~~~~~~~~~~~~vLV~----Td~~~~~~~rGid~~~-v~~VI~~d~P--~~~~~yi~R~GR~~~~------~g~~i 152 (159)
+.+|||| |++ +++|+|+|+ |++|||||+| .++.+|+||+||+||. .|.++
T Consensus 297 -------------~~~vLvat~s~T~~----~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i 359 (414)
T 3oiy_A 297 -------------KINILIGVQAYYGK----LTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSV 359 (414)
T ss_dssp -------------SCSEEEEECCTTCC----CCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEE
T ss_pred -------------CCeEEEEecCcCch----hhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEE
Confidence 8999999 999 999999999 9999999999 9999999999999874 46666
Q ss_pred EEE
Q 031433 153 DII 155 (159)
Q Consensus 153 ~~v 155 (159)
.|+
T Consensus 360 ~~~ 362 (414)
T 3oiy_A 360 IFE 362 (414)
T ss_dssp EEC
T ss_pred EEE
Confidence 653
|
| >1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=9.3e-22 Score=173.93 Aligned_cols=104 Identities=13% Similarity=0.126 Sum_probs=97.3
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEE
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMI 103 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL 103 (159)
.+.++||||+|++.++.+++.|.+.+ +.+..+||+|++.+|.+++++|+.| +.+||
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L~~~g-i~~~~lh~~~~~~~R~~~~~~f~~g-----------------------~~~VL 493 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFLVEHG-IRARYLHHELDAFKRQALIRDLRLG-----------------------HYDCL 493 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTT-CCEEEECTTCCHHHHHHHHHHHHTT-----------------------SCSEE
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhcC-CCceeecCCCCHHHHHHHHHHhhcC-----------------------CceEE
Confidence 46899999999999999999999998 7999999999999999999999998 89999
Q ss_pred EEecCCCCCCcCCCCCCCCCeEEEccC-----CCChhHHHhhhhcccCC-CCeEEEEE
Q 031433 104 VVTDACLPLLSSGESAISARVLINYEL-----PTKKETYIRRMTTCLAA-GTSFSDII 155 (159)
Q Consensus 104 V~Td~~~~~~~rGid~~~v~~VI~~d~-----P~~~~~yi~R~GR~~~~-~g~~i~~v 155 (159)
|+|++ +++|+|+|++++||+||. |.+..+|+||+||+||. .|.++.|+
T Consensus 494 vaT~~----l~~GlDip~v~lVI~~d~d~~G~p~s~~~~iQr~GRagR~~~G~~i~~~ 547 (664)
T 1c4o_A 494 VGINL----LREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNARGEVWLYA 547 (664)
T ss_dssp EESCC----CCTTCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTSTTCEEEEEC
T ss_pred EccCh----hhcCccCCCCCEEEEeCCcccCCCCCHHHHHHHHCccCcCCCCEEEEEE
Confidence 99999 999999999999999997 99999999999999776 47777664
|
| >3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-23 Score=178.04 Aligned_cols=107 Identities=20% Similarity=0.341 Sum_probs=0.0
Q ss_pred CCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCcee
Q 031433 22 RRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSH 101 (159)
Q Consensus 22 ~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (159)
.....++||||++++.++.+++.|...+ +.+..+||+|++++|..+++.|++| +.+
T Consensus 330 ~~~~~~~lvF~~s~~~~~~l~~~L~~~~-~~v~~lh~~~~~~~R~~~~~~f~~g-----------------------~~~ 385 (479)
T 3fmp_B 330 AITIAQAMIFCHTRKTASWLAAELSKEG-HQVALLSGEMMVEQRAAVIERFREG-----------------------KEK 385 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hccCCceEEEeCcHHHHHHHHHHHHhCC-ccEEEecCCCCHHHHHHHHHHHHcC-----------------------CCc
Confidence 3445799999999999999999999987 6999999999999999999999998 899
Q ss_pred EEEEecCCCCCCcCCCCCCCCCeEEEccCCC------ChhHHHhhhhcccCC--CCeEEEEEE
Q 031433 102 MIVVTDACLPLLSSGESAISARVLINYELPT------KKETYIRRMTTCLAA--GTSFSDIIL 156 (159)
Q Consensus 102 vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~------~~~~yi~R~GR~~~~--~g~~i~~v~ 156 (159)
|||||++ +++|+|+|++++|||||+|. +...|+||+||+||. .|.++.|+.
T Consensus 386 iLv~T~~----~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~ 444 (479)
T 3fmp_B 386 VLVTTNV----CARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVD 444 (479)
T ss_dssp ---------------------------------------------------------------
T ss_pred EEEEccc----cccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEc
Confidence 9999999 99999999999999999995 568999999999774 477777653
|
| >1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.5e-21 Score=155.95 Aligned_cols=111 Identities=13% Similarity=0.117 Sum_probs=88.4
Q ss_pred cHHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcC-CCccEEEeecCCCHHHHHHHHHHHhcccccccccccc
Q 031433 7 FQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL-ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTE 85 (159)
Q Consensus 7 ~~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~-~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~ 85 (159)
+.+.+.++|..+.. .+.|+||||++...++.+.+.|... | +.+..+||++++++|.+++++|++++
T Consensus 97 K~~~L~~ll~~~~~---~~~kvlIFs~~~~~~~~l~~~L~~~~g-~~~~~l~G~~~~~~R~~~i~~F~~~~--------- 163 (271)
T 1z5z_A 97 KMIRTMEIIEEALD---EGDKIAIFTQFVDMGKIIRNIIEKELN-TEVPFLYGELSKKERDDIISKFQNNP--------- 163 (271)
T ss_dssp HHHHHHHHHHHHHH---TTCCEEEEESCHHHHHHHHHHHHHHHC-SCCCEECTTSCHHHHHHHHHHHHHCT---------
T ss_pred HHHHHHHHHHHHHh---CCCeEEEEeccHHHHHHHHHHHHHhcC-CcEEEEECCCCHHHHHHHHHHhcCCC---------
Confidence 44555566665543 4689999999999999999999885 6 69999999999999999999999972
Q ss_pred cCCCCCCCCCCCCcee-EEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCC
Q 031433 86 QSGDESETGKDEHKSH-MIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAA 147 (159)
Q Consensus 86 ~~~~~~~~~~~~~~~~-vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~ 147 (159)
..+ +|++|++ +++|+|++.+++||+||+||++..|.||+||+.|.
T Consensus 164 -------------~~~v~L~st~~----~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~ 209 (271)
T 1z5z_A 164 -------------SVKFIVLSVKA----GGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRI 209 (271)
T ss_dssp -------------TCCEEEEECCT----TCCCCCCTTCSEEEECSCCSCTTTC----------
T ss_pred -------------CCCEEEEehhh----hcCCcCcccCCEEEEECCCCChhHHHHHHHhcccc
Confidence 455 7899999 99999999999999999999999999999999554
|
| >4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} | Back alignment and structure |
|---|
Probab=99.86 E-value=4.3e-22 Score=181.66 Aligned_cols=118 Identities=14% Similarity=0.202 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcC------------CCccEEEeecCCCHHHHHHHHHHHhc-
Q 031433 8 QETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL------------ADISFSSLHSDLAETERTLILEEFRH- 74 (159)
Q Consensus 8 ~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~------------~~i~~~~l~~~~~~~~R~~~l~~F~~- 74 (159)
.+.+.++|..... ...+.++||||+++++++.|+++|.+. | .....+||+|++++|.+++++|++
T Consensus 615 ~~~L~~lL~~~~~-~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G-~~~~~~hg~m~~~eR~~il~~Fr~~ 692 (936)
T 4a2w_A 615 LEELVCILDDAYR-YNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMG-RGRRDQTTGMTLPSQKGVLDAFKTS 692 (936)
T ss_dssp HHHHHHHHHHTTT-SCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------
T ss_pred HHHHHHHHHHHhc-cCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEec-CCCcccCCCCCHHHHHHHHHHhhcc
Confidence 3445555554433 356799999999999999999999976 3 356667899999999999999999
Q ss_pred ccccccccccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCC-CCeEEE
Q 031433 75 TAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAA-GTSFSD 153 (159)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~-~g~~i~ 153 (159)
| +++|||||++ +++|||+|+|++|||||+|+|+..|+||+|| ||. .|.++.
T Consensus 693 g-----------------------~~~VLVaT~~----~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR-GR~~~g~vi~ 744 (936)
T 4a2w_A 693 K-----------------------DNRLLIATSV----ADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRAAGSKCIL 744 (936)
T ss_dssp ------------------------CCSEEEEECC----------CCCCSEEEEESCCSCSHHHHCC--------CCCEEE
T ss_pred C-----------------------CeeEEEEeCc----hhcCCcchhCCEEEEeCCCCCHHHHHHhcCC-CCCCCCEEEE
Confidence 7 8999999999 9999999999999999999999999999999 665 466666
Q ss_pred EE
Q 031433 154 II 155 (159)
Q Consensus 154 ~v 155 (159)
++
T Consensus 745 Li 746 (936)
T 4a2w_A 745 VT 746 (936)
T ss_dssp EE
T ss_pred EE
Confidence 64
|
| >2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.7e-21 Score=155.73 Aligned_cols=102 Identities=22% Similarity=0.316 Sum_probs=93.1
Q ss_pred CCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCcee
Q 031433 22 RRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSH 101 (159)
Q Consensus 22 ~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (159)
...++++||||++++.++.+++.|. .+..+||+++.++|.+++++|+++ +.+
T Consensus 217 ~~~~~~~lvf~~~~~~~~~l~~~l~-----~~~~~~~~~~~~~r~~~~~~f~~~-----------------------~~~ 268 (337)
T 2z0m_A 217 ENKDKGVIVFVRTRNRVAKLVRLFD-----NAIELRGDLPQSVRNRNIDAFREG-----------------------EYD 268 (337)
T ss_dssp TCCCSSEEEECSCHHHHHHHHTTCT-----TEEEECTTSCHHHHHHHHHHHHTT-----------------------SCS
T ss_pred hCCCCcEEEEEcCHHHHHHHHHHhh-----hhhhhcCCCCHHHHHHHHHHHHcC-----------------------CCc
Confidence 4567899999999999999998885 578899999999999999999998 899
Q ss_pred EEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCC--CCeEEEEE
Q 031433 102 MIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAA--GTSFSDII 155 (159)
Q Consensus 102 vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~--~g~~i~~v 155 (159)
|||||++ +++|+|+|++++||+||+|+++..|+||+||++|. .|.++.|+
T Consensus 269 vlv~T~~----~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~gR~g~~g~~~~~~ 320 (337)
T 2z0m_A 269 MLITTDV----ASRGLDIPLVEKVINFDAPQDLRTYIHRIGRTGRMGRKGEAITFI 320 (337)
T ss_dssp EEEECHH----HHTTCCCCCBSEEEESSCCSSHHHHHHHHTTBCGGGCCEEEEEEE
T ss_pred EEEEcCc----cccCCCccCCCEEEEecCCCCHHHhhHhcCccccCCCCceEEEEE
Confidence 9999999 99999999999999999999999999999999775 46666655
|
| >1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=4e-23 Score=168.67 Aligned_cols=114 Identities=26% Similarity=0.439 Sum_probs=0.0
Q ss_pred HHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCC
Q 031433 13 ELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESE 92 (159)
Q Consensus 13 ~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~ 92 (159)
+.+..+.. .....++||||++++.++.+++.|++.+ +.+..+||++++++|.+++++|+++
T Consensus 248 ~~l~~~~~-~~~~~~~lVf~~~~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~r~~~~~~f~~~----------------- 308 (394)
T 1fuu_A 248 ECLTDLYD-SISVTQAVIFCNTRRKVEELTTKLRNDK-FTVSAIYSDLPQQERDTIMKEFRSG----------------- 308 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHh-cCCCCcEEEEECCHHHHHHHHHHHHHcC-CeEEEeeCCCCHHHHHHHHHHHHCC-----------------
Confidence 33443443 3456799999999999999999999987 6999999999999999999999998
Q ss_pred CCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCC--CCeEEEEE
Q 031433 93 TGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAA--GTSFSDII 155 (159)
Q Consensus 93 ~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~--~g~~i~~v 155 (159)
+.+|||||++ +++|+|+|++++||+||+|+++..|+||+||++|. .|.++.++
T Consensus 309 ------~~~vlv~T~~----~~~Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~ 363 (394)
T 1fuu_A 309 ------SSRILISTDL----LARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFV 363 (394)
T ss_dssp -----------------------------------------------------------------
T ss_pred ------CCcEEEECCh----hhcCCCcccCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEEEEE
Confidence 8999999999 99999999999999999999999999999999775 46666654
|
| >2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=2.2e-20 Score=167.46 Aligned_cols=125 Identities=13% Similarity=0.135 Sum_probs=104.1
Q ss_pred eecCcHHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhccccccccc
Q 031433 3 VSFTFQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQK 82 (159)
Q Consensus 3 v~~~~~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~ 82 (159)
++.+..++...+.+.+......+.++||||+|++.++.|++.|.+.| +.+.+|||++.+++|..+.++|+.|
T Consensus 419 v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~~g-i~~~vLnak~~~rEa~iia~agr~G------- 490 (853)
T 2fsf_A 419 VYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAG-IKHNVLNAKFHANEAAIVAQAGYPA------- 490 (853)
T ss_dssp EESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHTT-CCCEECCTTCHHHHHHHHHTTTSTT-------
T ss_pred EEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHCC-CCEEEecCChhHHHHHHHHhcCCCC-------
Confidence 34445555555555443323467899999999999999999999998 7999999999888888888888775
Q ss_pred ccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCC-------------------------------------CeE
Q 031433 83 VTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISA-------------------------------------RVL 125 (159)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v-------------------------------------~~V 125 (159)
.|+||||+ ++||+|++.. .+|
T Consensus 491 ------------------~VtIATnm----AgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~V 548 (853)
T 2fsf_A 491 ------------------AVTIATNM----AGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHI 548 (853)
T ss_dssp ------------------CEEEEESC----CSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEE
T ss_pred ------------------eEEEeccc----ccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEE
Confidence 59999999 9999999974 599
Q ss_pred EEccCCCChhHHHhhhhcccCC--CCeEEEEEEe
Q 031433 126 INYELPTKKETYIRRMTTCLAA--GTSFSDIILL 157 (159)
Q Consensus 126 I~~d~P~~~~~yi~R~GR~~~~--~g~~i~~v~~ 157 (159)
||||+|.+...|.||+||+||. +|.++.|+++
T Consensus 549 I~te~pes~riy~qr~GRTGRqGd~G~s~~fls~ 582 (853)
T 2fsf_A 549 IGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSM 582 (853)
T ss_dssp EESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEET
T ss_pred EEccCCCCHHHHHhhccccccCCCCeeEEEEecc
Confidence 9999999999999999999665 5888888764
|
| >3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.2e-20 Score=169.86 Aligned_cols=115 Identities=14% Similarity=0.173 Sum_probs=99.1
Q ss_pred HHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcC-CCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCC
Q 031433 11 LVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL-ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGD 89 (159)
Q Consensus 11 l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~-~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~ 89 (159)
+...|..++. ...+.++||||+++++++.+++.|.+. | +.+..+||+|++.+|.+++++|+++
T Consensus 490 K~~~L~~ll~-~~~~~k~iVF~~~~~~~~~l~~~L~~~~g-~~~~~lhG~~~~~~R~~~l~~F~~g-------------- 553 (968)
T 3dmq_A 490 RVEWLMGYLT-SHRSQKVLVICAKAATALQLEQVLREREG-IRAAVFHEGMSIIERDRAAAWFAEE-------------- 553 (968)
T ss_dssp HHHHHHHHHH-HTSSSCCCEECSSTHHHHHHHHHHHTTTC-CCEEEECTTSCTTHHHHHHHHHHST--------------
T ss_pred HHHHHHHHHH-hCCCCCEEEEeCcHHHHHHHHHHHHHHcC-CcEEEEeCCCCHHHHHHHHHHHhCC--------------
Confidence 3333443444 356789999999999999999999964 6 7999999999999999999999998
Q ss_pred CCCCCCCCCc--eeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCC--CCeEEEE
Q 031433 90 ESETGKDEHK--SHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAA--GTSFSDI 154 (159)
Q Consensus 90 ~~~~~~~~~~--~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~--~g~~i~~ 154 (159)
+ ++|||||++ +++|+|+|++++||+||+|+++..|.||+||++|. .+.++.+
T Consensus 554 ---------~~~~~vLvaT~v----~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~ 609 (968)
T 3dmq_A 554 ---------DTGAQVLLCSEI----GSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIH 609 (968)
T ss_dssp ---------TSSCEEEECSCC----TTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEE
T ss_pred ---------CCcccEEEecch----hhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEE
Confidence 5 999999999 99999999999999999999999999999999554 3544433
|
| >1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.6e-20 Score=158.66 Aligned_cols=98 Identities=11% Similarity=0.047 Sum_probs=82.2
Q ss_pred CCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEEE
Q 031433 25 GLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIV 104 (159)
Q Consensus 25 ~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLV 104 (159)
+.++||||++++.++.+++.|++.+ +.+..+|| ++|.+++++|++| +.+|||
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~~-~~v~~lhg----~~R~~~~~~F~~g-----------------------~~~vLV 228 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKAG-KSVVVLNR----KTFEREYPTIKQK-----------------------KPDFIL 228 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTT-CCEEECCS----SSCC--------C-----------------------CCSEEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHcC-CCEEEecc----hhHHHHHhhhcCC-----------------------CceEEE
Confidence 5799999999999999999999997 69999999 4688999999998 899999
Q ss_pred EecCCCCCCcCCCCCCCCCeEEE-------------------ccCCCChhHHHhhhhcccCC---CCeEEEEE
Q 031433 105 VTDACLPLLSSGESAISARVLIN-------------------YELPTKKETYIRRMTTCLAA---GTSFSDII 155 (159)
Q Consensus 105 ~Td~~~~~~~rGid~~~v~~VI~-------------------~d~P~~~~~yi~R~GR~~~~---~g~~i~~v 155 (159)
||++ +++|+|+| +++||| ||.|.+..+|+||+||+||. .|.++.|+
T Consensus 229 aT~v----~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l~ 296 (440)
T 1yks_A 229 ATDI----AEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYS 296 (440)
T ss_dssp ESSS----TTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEEC
T ss_pred ECCh----hheeeccC-ceEEEeCCccceeeecccccceeeccccccCHHHHHHhccccCCCCCCCceEEEEe
Confidence 9999 99999999 999996 99999999999999999875 47777664
|
| >1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A | Back alignment and structure |
|---|
Probab=99.81 E-value=7.9e-20 Score=164.51 Aligned_cols=125 Identities=14% Similarity=0.111 Sum_probs=102.8
Q ss_pred eecCcHHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhccccccccc
Q 031433 3 VSFTFQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQK 82 (159)
Q Consensus 3 v~~~~~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~ 82 (159)
++.+..++...+++.+......+.++||||+|++.++.|++.|.+.| +.+.+|||++.++++..+.++|+.|
T Consensus 438 v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~G-i~~~vLnak~~~rEa~iia~agr~G------- 509 (922)
T 1nkt_A 438 IYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRR-IPHNVLNAKYHEQEATIIAVAGRRG------- 509 (922)
T ss_dssp EESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTT-CCCEEECSSCHHHHHHHHHTTTSTT-------
T ss_pred EEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCC-CCEEEecCChhHHHHHHHHhcCCCC-------
Confidence 34444555555555444323456899999999999999999999998 7999999999888877777777765
Q ss_pred ccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCC----------------------------------------
Q 031433 83 VTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISA---------------------------------------- 122 (159)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v---------------------------------------- 122 (159)
.|+||||+ ++||+|++.+
T Consensus 510 ------------------~VtIATnm----AgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 567 (922)
T 1nkt_A 510 ------------------GVTVATNM----AGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEA 567 (922)
T ss_dssp ------------------CEEEEETT----CSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHT
T ss_pred ------------------eEEEecch----hhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHH
Confidence 58999999 9999999976
Q ss_pred ------------CeEEEccCCCChhHHHhhhhcccCC--CCeEEEEEEe
Q 031433 123 ------------RVLINYELPTKKETYIRRMTTCLAA--GTSFSDIILL 157 (159)
Q Consensus 123 ------------~~VI~~d~P~~~~~yi~R~GR~~~~--~g~~i~~v~~ 157 (159)
.+|||||.|.+...|.||+||+||. +|.++.|+++
T Consensus 568 ~~~~~~V~~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSl 616 (922)
T 1nkt_A 568 SKEAKEVIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSL 616 (922)
T ss_dssp THHHHHHHHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEET
T ss_pred HHhhhHHHhcCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEech
Confidence 4999999999999999999999665 5888888864
|
| >2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A | Back alignment and structure |
|---|
Probab=99.81 E-value=4e-20 Score=162.37 Aligned_cols=98 Identities=10% Similarity=0.000 Sum_probs=89.4
Q ss_pred CCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEEE
Q 031433 25 GLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIV 104 (159)
Q Consensus 25 ~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLV 104 (159)
..++||||+|++.++.+++.|++.+ +.+..+||+ +|.+++++|++| +.+|||
T Consensus 355 ~~~~LVF~~s~~~a~~l~~~L~~~g-~~v~~lhg~----~R~~~l~~F~~g-----------------------~~~VLV 406 (618)
T 2whx_A 355 QGKTVWFVPSIKAGNDIANCLRKSG-KRVIQLSRK----TFDTEYPKTKLT-----------------------DWDFVV 406 (618)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHTT-CCEEEECTT----THHHHTTHHHHS-----------------------CCSEEE
T ss_pred CCCEEEEECChhHHHHHHHHHHHcC-CcEEEEChH----HHHHHHHhhcCC-----------------------CcEEEE
Confidence 5799999999999999999999998 699999984 788899999998 899999
Q ss_pred EecCCCCCCcCCCCCCCCCeE--------------------EEccCCCChhHHHhhhhcccCC---CCeEEEEE
Q 031433 105 VTDACLPLLSSGESAISARVL--------------------INYELPTKKETYIRRMTTCLAA---GTSFSDII 155 (159)
Q Consensus 105 ~Td~~~~~~~rGid~~~v~~V--------------------I~~d~P~~~~~yi~R~GR~~~~---~g~~i~~v 155 (159)
|||+ ++||+|++ +++| ||||+|.+.++|+||+||+||. .|.++.|+
T Consensus 407 aTdv----~~rGiDi~-v~~VId~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~ 475 (618)
T 2whx_A 407 TTDI----SEMGANFR-AGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFS 475 (618)
T ss_dssp ECGG----GGTTCCCC-CSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEEC
T ss_pred ECcH----HHcCcccC-ceEEEECcceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEc
Confidence 9999 99999997 9988 8889999999999999999776 46777665
|
| >2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A | Back alignment and structure |
|---|
Probab=99.81 E-value=1.5e-20 Score=159.51 Aligned_cols=99 Identities=8% Similarity=-0.023 Sum_probs=87.2
Q ss_pred CCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEEE
Q 031433 25 GLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIV 104 (159)
Q Consensus 25 ~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLV 104 (159)
+.++||||++++.++.+++.|+..+ +.+..+||+ +|.+++++|++| +.+|||
T Consensus 190 ~~~~LVF~~s~~~~~~l~~~L~~~g-~~v~~lh~~----~R~~~~~~f~~g-----------------------~~~iLV 241 (459)
T 2z83_A 190 AGKTVWFVASVKMGNEIAMCLQRAG-KKVIQLNRK----SYDTEYPKCKNG-----------------------DWDFVI 241 (459)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTT-CCEEEESTT----CCCCCGGGSSSC-----------------------CCSEEE
T ss_pred CCCEEEEeCChHHHHHHHHHHHhcC-CcEEecCHH----HHHHHHhhccCC-----------------------CceEEE
Confidence 5799999999999999999999997 699999995 678889999998 899999
Q ss_pred EecCCCCCCcCCCCCCCCCeEEE--------------------ccCCCChhHHHhhhhcccCC---CCeEEEEEE
Q 031433 105 VTDACLPLLSSGESAISARVLIN--------------------YELPTKKETYIRRMTTCLAA---GTSFSDIIL 156 (159)
Q Consensus 105 ~Td~~~~~~~rGid~~~v~~VI~--------------------~d~P~~~~~yi~R~GR~~~~---~g~~i~~v~ 156 (159)
||++ +++|+|+|+ ++||| ||.|.++.+|+||+||+||. .|.++.|++
T Consensus 242 aT~v----~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~~~~~ 311 (459)
T 2z83_A 242 TTDI----SEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQVGDEYHYGG 311 (459)
T ss_dssp ESSC----C---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTCCCEEEEECS
T ss_pred ECCh----HHhCeecCC-CEEEECCcccccccccccccccccccCCCCCHHHHHHhccccCCCCCCCCeEEEEEc
Confidence 9999 999999999 99999 88999999999999999776 567776653
|
| >2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A | Back alignment and structure |
|---|
Probab=99.81 E-value=6.7e-20 Score=155.07 Aligned_cols=97 Identities=10% Similarity=0.017 Sum_probs=87.0
Q ss_pred CCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEEE
Q 031433 25 GLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIV 104 (159)
Q Consensus 25 ~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLV 104 (159)
..++||||++++.++.+++.|++.+ +.+..+||++. .+++++|++| +.+|||
T Consensus 188 ~~~~lVF~~s~~~a~~l~~~L~~~g-~~~~~lh~~~~----~~~~~~f~~g-----------------------~~~vLV 239 (451)
T 2jlq_A 188 QGKTVWFVPSIKAGNDIANCLRKSG-KRVIQLSRKTF----DTEYPKTKLT-----------------------DWDFVV 239 (451)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTTT-CCEEEECTTTH----HHHGGGGGSS-----------------------CCSEEE
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHcC-CeEEECCHHHH----HHHHHhhccC-----------------------CceEEE
Confidence 4699999999999999999999997 69999999764 5689999998 899999
Q ss_pred EecCCCCCCcCCCCCCCCCeEEEcc--------------------CCCChhHHHhhhhcccCCC---CeEEEE
Q 031433 105 VTDACLPLLSSGESAISARVLINYE--------------------LPTKKETYIRRMTTCLAAG---TSFSDI 154 (159)
Q Consensus 105 ~Td~~~~~~~rGid~~~v~~VI~~d--------------------~P~~~~~yi~R~GR~~~~~---g~~i~~ 154 (159)
|||+ +++|+|+|+ ++||||| .|.+..+|+||+||+||.+ |.++.|
T Consensus 240 aT~v----~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~ 307 (451)
T 2jlq_A 240 TTDI----SEMGANFRA-GRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVF 307 (451)
T ss_dssp ECGG----GGSSCCCCC-SEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEE
T ss_pred ECCH----HHhCcCCCC-CEEEECCCcccccccccccceeeecccccCCHHHHHHhccccCCCCCCCccEEEE
Confidence 9999 999999999 9999999 9999999999999997765 445433
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=99.80 E-value=2.4e-20 Score=167.36 Aligned_cols=105 Identities=11% Similarity=0.143 Sum_probs=94.1
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhc----------CCCccEEEeecCCCHHHHHHHHHHHh-----cccccccccccccC
Q 031433 23 RPGLPMIVCCSSRDELDAVCSAVSN----------LADISFSSLHSDLAETERTLILEEFR-----HTAMKWNQKVTEQS 87 (159)
Q Consensus 23 ~~~~k~iIF~ns~~~~~~l~~~L~~----------~~~i~~~~l~~~~~~~~R~~~l~~F~-----~~~~~~~~~~~~~~ 87 (159)
..+.++||||++++.++.+++.|++ ...+.+..+||+|++++|.++++.|+ .|
T Consensus 301 ~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g------------ 368 (773)
T 2xau_A 301 EEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRP------------ 368 (773)
T ss_dssp SCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSC------------
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCC------------
Confidence 3468999999999999999999985 13378999999999999999999998 66
Q ss_pred CCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccC------------------CCChhHHHhhhhcccCC-C
Q 031433 88 GDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYEL------------------PTKKETYIRRMTTCLAA-G 148 (159)
Q Consensus 88 ~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~------------------P~~~~~yi~R~GR~~~~-~ 148 (159)
..+|||||++ +++|+|++++++||+|++ |.+..+|+||+||+||. .
T Consensus 369 -----------~~kVlVAT~i----ae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~~~ 433 (773)
T 2xau_A 369 -----------GRKVVISTNI----AETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRP 433 (773)
T ss_dssp -----------CEEEEEECTH----HHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSSSS
T ss_pred -----------ceEEEEeCcH----HHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCCCC
Confidence 8999999999 999999999999999888 89999999999999885 5
Q ss_pred CeEEEE
Q 031433 149 TSFSDI 154 (159)
Q Consensus 149 g~~i~~ 154 (159)
|.++.|
T Consensus 434 G~~~~l 439 (773)
T 2xau_A 434 GKCFRL 439 (773)
T ss_dssp EEEEES
T ss_pred CEEEEE
Confidence 666654
|
| >4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A | Back alignment and structure |
|---|
Probab=99.80 E-value=1.7e-19 Score=167.01 Aligned_cols=86 Identities=16% Similarity=0.265 Sum_probs=75.3
Q ss_pred cHHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEE-EeecCCCHHHHHHHHHHHhcccccccccccc
Q 031433 7 FQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFS-SLHSDLAETERTLILEEFRHTAMKWNQKVTE 85 (159)
Q Consensus 7 ~~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~-~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~ 85 (159)
+.+.+.+++.. .+.++|||||+++.++.+++.|+..+ +.+. .+||+ |.+ +++|++|
T Consensus 297 k~~~L~~ll~~------~~~~~LVF~~s~~~a~~l~~~L~~~g-~~~~~~lhg~-----rr~-l~~F~~G---------- 353 (1104)
T 4ddu_A 297 SKEKLVELLEI------FRDGILIFAQTEEEGKELYEYLKRFK-FNVGETWSEF-----EKN-FEDFKVG---------- 353 (1104)
T ss_dssp CHHHHHHHHHH------HCSSEEEEESSSHHHHHHHHHHHHTT-CCEEESSSSH-----HHH-HHHHHHT----------
T ss_pred HHHHHHHHHHh------cCCCEEEEECcHHHHHHHHHHHHhCC-CCeeeEecCc-----HHH-HHHHHCC----------
Confidence 44556666654 13899999999999999999999998 6998 99992 555 9999999
Q ss_pred cCCCCCCCCCCCCceeEEEE----ecCCCCCCcCCCCCCC-CCeEEEccCCC
Q 031433 86 QSGDESETGKDEHKSHMIVV----TDACLPLLSSGESAIS-ARVLINYELPT 132 (159)
Q Consensus 86 ~~~~~~~~~~~~~~~~vLV~----Td~~~~~~~rGid~~~-v~~VI~~d~P~ 132 (159)
+.+|||| ||+ ++||+|+|+ |++|||||+|.
T Consensus 354 -------------~~~VLVatas~Tdv----larGIDip~~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 354 -------------KINILIGVQAYYGK----LTRGVDLPERIKYVIFWGTPS 388 (1104)
T ss_dssp -------------SCSEEEEETTTHHH----HCCSCCCTTTCCEEEEESCCE
T ss_pred -------------CCCEEEEecCCCCe----eEecCcCCCCCCEEEEECCCC
Confidence 8999999 999 999999999 99999999999
|
| >2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=5.7e-20 Score=154.88 Aligned_cols=102 Identities=20% Similarity=0.256 Sum_probs=90.4
Q ss_pred HHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCC
Q 031433 13 ELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESE 92 (159)
Q Consensus 13 ~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~ 92 (159)
+.+..++. ...+.++||||++++.++.+++.|. +..+||+++.++|.+++++|++|
T Consensus 338 ~~l~~~l~-~~~~~k~lvF~~~~~~~~~l~~~l~------~~~~~g~~~~~~R~~~~~~F~~g----------------- 393 (472)
T 2fwr_A 338 RKLREILE-RHRKDKIIIFTRHNELVYRISKVFL------IPAITHRTSREEREEILEGFRTG----------------- 393 (472)
T ss_dssp HHHHHHHH-HTSSSCBCCBCSCHHHHHHHHHHTT------CCBCCSSSCSHHHHTHHHHHHHS-----------------
T ss_pred HHHHHHHH-hCCCCcEEEEECCHHHHHHHHHHhC------cceeeCCCCHHHHHHHHHHHhCC-----------------
Confidence 33333444 3567899999999999999999983 45689999999999999999998
Q ss_pred CCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCCC
Q 031433 93 TGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAG 148 (159)
Q Consensus 93 ~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~~ 148 (159)
+.+|||+|++ +++|+|+|++++||+||.|+++..|+||+||++|.+
T Consensus 394 ------~~~vLv~T~~----~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g 439 (472)
T 2fwr_A 394 ------RFRAIVSSQV----LDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPS 439 (472)
T ss_dssp ------SCSBCBCSSC----CCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCC
T ss_pred ------CCCEEEEcCc----hhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCC
Confidence 8999999999 999999999999999999999999999999997654
|
| >3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.5e-19 Score=167.29 Aligned_cols=119 Identities=16% Similarity=0.185 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCcc-----------------------------------
Q 031433 8 QETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADIS----------------------------------- 52 (159)
Q Consensus 8 ~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~----------------------------------- 52 (159)
...+..++..+.. ....++||||++++.|+.++..|...+ +.
T Consensus 426 ~~~l~~li~~l~~--~~~~~vIVF~~sr~~~e~la~~L~~~~-~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~ 502 (1108)
T 3l9o_A 426 KGDIYKIVKMIWK--KKYNPVIVFSFSKRDCEELALKMSKLD-FNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPL 502 (1108)
T ss_dssp HHHHHHHHHHHHH--TTCCCEEEEESCHHHHHHHHHHTCSHH-HHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHH
T ss_pred hhHHHHHHHHHHh--cCCCCEEEEeCcHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHh
Confidence 4455566665544 346799999999999999999997642 11
Q ss_pred ----EEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEc
Q 031433 53 ----FSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINY 128 (159)
Q Consensus 53 ----~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~ 128 (159)
+..+||+|++.+|..+++.|++| .++|||||++ +++|+|+|++++||++
T Consensus 503 l~~gV~~~Hg~l~~~~R~~v~~~F~~G-----------------------~ikVLVAT~v----la~GIDiP~v~~VI~~ 555 (1108)
T 3l9o_A 503 LRRGIGIHHSGLLPILKEVIEILFQEG-----------------------FLKVLFATET----FSIGLNMPAKTVVFTS 555 (1108)
T ss_dssp HHHTEEEECSCSCHHHHHHHHHHHHHT-----------------------CCCEEEEESC----CCSCCCC--CEEEESC
T ss_pred hhcCeeeecCCCCHHHHHHHHHHHhCC-----------------------CCeEEEECcH----HhcCCCCCCceEEEec
Confidence 79999999999999999999999 8999999999 9999999999999988
Q ss_pred cCCC--------ChhHHHhhhhcccCCC--CeEEEEEE
Q 031433 129 ELPT--------KKETYIRRMTTCLAAG--TSFSDIIL 156 (159)
Q Consensus 129 d~P~--------~~~~yi~R~GR~~~~~--g~~i~~v~ 156 (159)
+.|+ ++.+|+||+||+||.+ +.++.++.
T Consensus 556 ~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill 593 (1108)
T 3l9o_A 556 VRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMM 593 (1108)
T ss_dssp SEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEE
T ss_pred CcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEE
Confidence 8754 5667999999998877 55555543
|
| >2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.6e-19 Score=159.91 Aligned_cols=99 Identities=8% Similarity=-0.030 Sum_probs=90.3
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEE
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMI 103 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL 103 (159)
.+.++||||++++.++.+++.|++.+ +.+..+||+ +|.+++++|++| +.+||
T Consensus 409 ~~~~~lVF~~s~~~~e~la~~L~~~g-~~v~~lHg~----eR~~v~~~F~~g-----------------------~~~VL 460 (673)
T 2wv9_A 409 YAGKTVWFVASVKMSNEIAQCLQRAG-KRVIQLNRK----SYDTEYPKCKNG-----------------------DWDFV 460 (673)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTTT-CCEEEECSS----SHHHHGGGGGTC-----------------------CCSEE
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhCC-CeEEEeChH----HHHHHHHHHHCC-----------------------CceEE
Confidence 46899999999999999999999997 799999994 789999999998 89999
Q ss_pred EEecCCCCCCcCCCCCCCCCeEEE--------------------ccCCCChhHHHhhhhcccCC---CCeEEEEE
Q 031433 104 VVTDACLPLLSSGESAISARVLIN--------------------YELPTKKETYIRRMTTCLAA---GTSFSDII 155 (159)
Q Consensus 104 V~Td~~~~~~~rGid~~~v~~VI~--------------------~d~P~~~~~yi~R~GR~~~~---~g~~i~~v 155 (159)
|||++ +++|+|+| +++||| ||+|.++++|+||+||+||. .|.++.|+
T Consensus 461 VaTdv----~e~GIDip-v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~ 530 (673)
T 2wv9_A 461 ITTDI----SEMGANFG-ASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYG 530 (673)
T ss_dssp EECGG----GGTTCCCC-CSEEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEEC
T ss_pred EECch----hhcceeeC-CcEEEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEE
Confidence 99999 99999999 999998 67999999999999999776 46667664
|
| >3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=99.79 E-value=4.7e-19 Score=153.56 Aligned_cols=105 Identities=12% Similarity=0.153 Sum_probs=87.2
Q ss_pred HHccCCCCCcEEEEeCchHHHHHHHHHHhcCCC-------ccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCC
Q 031433 18 VVAGRRPGLPMIVCCSSRDELDAVCSAVSNLAD-------ISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDE 90 (159)
Q Consensus 18 l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~-------i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~ 90 (159)
++.......|+||||+++++++.+++.|.+.+. -.+..+||++++ +|.+++++|++++..
T Consensus 432 ~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~-~r~~~l~~F~~~~~~------------ 498 (590)
T 3h1t_A 432 FMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGK-IGKGHLSRFQELETS------------ 498 (590)
T ss_dssp HHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHH-HHHHHHHHHHCTTCC------------
T ss_pred HHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChH-HHHHHHHHHhCCCCC------------
Confidence 343345568999999999999999999987531 137889999864 799999999997200
Q ss_pred CCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCC
Q 031433 91 SETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAA 147 (159)
Q Consensus 91 ~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~ 147 (159)
...|||||++ +++|+|+|++++||+|+.|+++..|+||+||++|.
T Consensus 499 --------~~~ilvtt~~----l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~ 543 (590)
T 3h1t_A 499 --------TPVILTTSQL----LTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRL 543 (590)
T ss_dssp --------CCCEEEESST----TTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCC
T ss_pred --------CCEEEEECCh----hhcCccchheeEEEEEecCCChHHHHHHHhhhccc
Confidence 1238899999 99999999999999999999999999999999774
|
| >2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.79 E-value=4.2e-19 Score=163.15 Aligned_cols=116 Identities=16% Similarity=0.183 Sum_probs=99.5
Q ss_pred HHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCc--------------------------------------c
Q 031433 11 LVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADI--------------------------------------S 52 (159)
Q Consensus 11 l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i--------------------------------------~ 52 (159)
+..++..+.. ....++||||++++.++.+++.|...+.. .
T Consensus 331 l~~l~~~l~~--~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~g 408 (1010)
T 2xgj_A 331 IYKIVKMIWK--KKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRG 408 (1010)
T ss_dssp HHHHHHHHHH--HTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHh--cCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCC
Confidence 4455554433 23469999999999999999999875421 1
Q ss_pred EEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEE----c
Q 031433 53 FSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLIN----Y 128 (159)
Q Consensus 53 ~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~----~ 128 (159)
+..+||+|++.+|..+++.|++| .++|||||++ +++|+|+|++++||+ |
T Consensus 409 I~~~Hggl~~~eR~~ve~~F~~G-----------------------~ikVLVAT~~----la~GIDiP~~~vVI~~~~kf 461 (1010)
T 2xgj_A 409 IGIHHSGLLPILKEVIEILFQEG-----------------------FLKVLFATET----FSIGLNMPAKTVVFTSVRKW 461 (1010)
T ss_dssp EEEESTTSCHHHHHHHHHHHHTT-----------------------CCSEEEEEGG----GGGSTTCCBSEEEESCSEEE
T ss_pred eeEECCCCCHHHHHHHHHHHhcC-----------------------CCcEEEEehH----hhccCCCCCceEEEeCCccc
Confidence 78899999999999999999998 8999999999 999999999999999 9
Q ss_pred cC----CCChhHHHhhhhcccCCC----CeEEEEE
Q 031433 129 EL----PTKKETYIRRMTTCLAAG----TSFSDII 155 (159)
Q Consensus 129 d~----P~~~~~yi~R~GR~~~~~----g~~i~~v 155 (159)
|. |.++.+|+||+||+||.+ |.++.++
T Consensus 462 d~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~ 496 (1010)
T 2xgj_A 462 DGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMI 496 (1010)
T ss_dssp CSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEE
T ss_pred CCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEE
Confidence 99 999999999999998876 6777665
|
| >1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.7e-18 Score=146.78 Aligned_cols=109 Identities=13% Similarity=0.132 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcC-CCccEEEeecCCCHHHHHHHHHHHhcccccccccccccC
Q 031433 9 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL-ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQS 87 (159)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~-~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~ 87 (159)
+.+.+++..+. ..+.|+||||++++.++.+.+.|... + +.+..+||+++.++|.+++++|++++
T Consensus 328 ~~l~~~l~~~~---~~~~k~lvF~~~~~~~~~l~~~l~~~~~-~~~~~~~g~~~~~~R~~~~~~F~~~~----------- 392 (500)
T 1z63_A 328 IRTMEIIEEAL---DEGDKIAIFTQFVDMGKIIRNIIEKELN-TEVPFLYGELSKKERDDIISKFQNNP----------- 392 (500)
T ss_dssp HHHHHHHHHHH---TTTCCEEEECSCHHHHHHHHHHHHHHHT-CCCCEEETTSCHHHHHHHHHHHHHCT-----------
T ss_pred HHHHHHHHHHH---ccCCcEEEEEehHHHHHHHHHHHHHhhC-CCeEEEECCCCHHHHHHHHHHhcCCC-----------
Confidence 34445555443 35689999999999999999999885 6 68999999999999999999999972
Q ss_pred CCCCCCCCCCCcee-EEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCC
Q 031433 88 GDESETGKDEHKSH-MIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAA 147 (159)
Q Consensus 88 ~~~~~~~~~~~~~~-vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~ 147 (159)
..+ +|++|++ +++|+|++.+++||+||+||++..|.||+||++|.
T Consensus 393 -----------~~~vil~st~~----~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~ 438 (500)
T 1z63_A 393 -----------SVKFIVLSVKA----GGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRI 438 (500)
T ss_dssp -----------TCCCCEEECCC----C-CCCCCTTCSEEEESSCCSCC---CHHHHTTTTT
T ss_pred -----------CCCEEEEeccc----ccCCCchhhCCEEEEeCCCCCcchHHHHHHHHHHc
Confidence 344 7999999 99999999999999999999999999999999554
|
| >2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.4e-18 Score=153.73 Aligned_cols=116 Identities=19% Similarity=0.235 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCC-----------------------------------ccE
Q 031433 9 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLAD-----------------------------------ISF 53 (159)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~-----------------------------------i~~ 53 (159)
+.+.+++..+.. .+.++||||++++.++.+++.|.+... ..+
T Consensus 239 ~~~~~~~~~~~~---~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v 315 (715)
T 2va8_A 239 DAIIAYTLDSLS---KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGV 315 (715)
T ss_dssp SHHHHHHHHHHT---TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTE
T ss_pred hHHHHHHHHHHh---cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCE
Confidence 344444444443 468999999999999999999986421 138
Q ss_pred EEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEE----cc
Q 031433 54 SSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLIN----YE 129 (159)
Q Consensus 54 ~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~----~d 129 (159)
..+||+|++++|..+++.|++| .++|||||++ +++|+|+|++++||+ ||
T Consensus 316 ~~~h~~l~~~~r~~v~~~f~~g-----------------------~~~vlvaT~~----l~~Gidip~~~~VI~~~~~~d 368 (715)
T 2va8_A 316 AYHHAGLSKALRDLIEEGFRQR-----------------------KIKVIVATPT----LAAGVNLPARTVIIGDIYRFN 368 (715)
T ss_dssp EEECTTSCHHHHHHHHHHHHTT-----------------------CSCEEEECGG----GGGSSCCCBSEEEECCC----
T ss_pred EEECCCCCHHHHHHHHHHHHcC-----------------------CCeEEEEChH----HhcccCCCceEEEEeCCeecc
Confidence 8999999999999999999998 8999999999 999999999999999 99
Q ss_pred -------CCCChhHHHhhhhcccCCC----CeEEEE
Q 031433 130 -------LPTKKETYIRRMTTCLAAG----TSFSDI 154 (159)
Q Consensus 130 -------~P~~~~~yi~R~GR~~~~~----g~~i~~ 154 (159)
.|.+..+|.||+||+||.+ |.++.+
T Consensus 369 ~~~~~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l 404 (715)
T 2va8_A 369 KKIAGYYDEIPIMEYKQMSGRAGRPGFDQIGESIVV 404 (715)
T ss_dssp ----------CHHHHHHHHTTBCCTTTCSCEEEEEE
T ss_pred ccCCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEE
Confidence 8999999999999998854 556554
|
| >3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A | Back alignment and structure |
|---|
Probab=99.78 E-value=8.3e-19 Score=155.45 Aligned_cols=94 Identities=17% Similarity=0.252 Sum_probs=88.8
Q ss_pred CcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhc--ccccccccccccCCCCCCCCCCCCceeEE
Q 031433 26 LPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRH--TAMKWNQKVTEQSGDESETGKDEHKSHMI 103 (159)
Q Consensus 26 ~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~vL 103 (159)
...+|||++++.++.+++.|++.+ +.+..+||+|++++|.++++.|+. | +.+||
T Consensus 321 ~g~iIf~~s~~~ie~la~~L~~~g-~~v~~lHG~L~~~~R~~~~~~F~~~~g-----------------------~~~VL 376 (677)
T 3rc3_A 321 PGDCIVCFSKNDIYSVSRQIEIRG-LESAVIYGSLPPGTKLAQAKKFNDPND-----------------------PCKIL 376 (677)
T ss_dssp TTEEEECSSHHHHHHHHHHHHHTT-CCCEEECTTSCHHHHHHHHHHHHCTTS-----------------------SCCEE
T ss_pred CCCEEEEcCHHHHHHHHHHHHhcC-CCeeeeeccCCHHHHHHHHHHHHccCC-----------------------CeEEE
Confidence 455899999999999999999987 699999999999999999999998 5 79999
Q ss_pred EEecCCCCCCcCCCCCCCCCeEEEccC--------------CCChhHHHhhhhcccCCC
Q 031433 104 VVTDACLPLLSSGESAISARVLINYEL--------------PTKKETYIRRMTTCLAAG 148 (159)
Q Consensus 104 V~Td~~~~~~~rGid~~~v~~VI~~d~--------------P~~~~~yi~R~GR~~~~~ 148 (159)
|||++ +++|+|+ ++++||++++ |.+..+|+||+||+||.+
T Consensus 377 VATdi----~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g 430 (677)
T 3rc3_A 377 VATDA----IGMGLNL-SIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFS 430 (677)
T ss_dssp EECGG----GGSSCCC-CBSEEEESCSBC-----------CBCCHHHHHHHHTTBTCTT
T ss_pred EeCcH----HHCCcCc-CccEEEECCccccccccCCccccccCCHHHHHHHhcCCCCCC
Confidence 99999 9999999 9999999999 889999999999998876
|
| >2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.4e-18 Score=147.62 Aligned_cols=105 Identities=11% Similarity=0.090 Sum_probs=92.7
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEE
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMI 103 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL 103 (159)
.++++||||+ .+.++.+++.|.+.+ ..+..+||+|++++|.+++++|+++ +.+||
T Consensus 347 ~~~~~ivf~~-~~~~~~l~~~L~~~~-~~v~~~~g~~~~~~r~~i~~~f~~g-----------------------~~~vL 401 (510)
T 2oca_A 347 DENAFVMFKH-VSHGKAIFDLIKNEY-DKVYYVSGEVDTETRNIMKTLAENG-----------------------KGIII 401 (510)
T ss_dssp TCEEEEEESS-HHHHHHHHHHHHTTC-SSEEEESSSTTHHHHHHHHHHHHHC-----------------------CSCEE
T ss_pred CCCeEEEEec-HHHHHHHHHHHHHcC-CCeEEEECCCCHHHHHHHHHHHhCC-----------------------CCCEE
Confidence 4567777777 888999999999987 4999999999999999999999998 89999
Q ss_pred EEe-cCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCCC--CeEEEEEEe
Q 031433 104 VVT-DACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAG--TSFSDIILL 157 (159)
Q Consensus 104 V~T-d~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~~--g~~i~~v~~ 157 (159)
||| ++ +++|+|+|++++||+++.|+++..|+||+||++|.+ +..+.++.+
T Consensus 402 v~T~~~----~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~~ 454 (510)
T 2oca_A 402 VASYGV----FSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWDL 454 (510)
T ss_dssp EEEHHH----HHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEEE
T ss_pred EEEcCh----hhcccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEEe
Confidence 999 99 999999999999999999999999999999996654 334555443
|
| >2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A | Back alignment and structure |
|---|
Probab=99.77 E-value=6.5e-19 Score=148.34 Aligned_cols=91 Identities=9% Similarity=-0.010 Sum_probs=83.6
Q ss_pred CCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEEE
Q 031433 25 GLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIV 104 (159)
Q Consensus 25 ~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLV 104 (159)
+.++||||++++.++.+++.|++.+ +.+..+||+ +|.+++++|++| +.+|||
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~~-~~v~~lhg~----~r~~~~~~f~~g-----------------------~~~vLV 222 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKAG-KKVLYLNRK----TFESEYPKCKSE-----------------------KWDFVI 222 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHTT-CCEEEESTT----THHHHTTHHHHS-----------------------CCSEEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHcC-CeEEEeCCc----cHHHHHHhhcCC-----------------------CCeEEE
Confidence 4689999999999999999999997 699999997 577899999998 899999
Q ss_pred EecCCCCCCcCCCCCCCCCe-----------------EEEccCCCChhHHHhhhhcccCCC
Q 031433 105 VTDACLPLLSSGESAISARV-----------------LINYELPTKKETYIRRMTTCLAAG 148 (159)
Q Consensus 105 ~Td~~~~~~~rGid~~~v~~-----------------VI~~d~P~~~~~yi~R~GR~~~~~ 148 (159)
||++ +++|+|+| +.+ ||+|+.|.+..+|+||+||+||.+
T Consensus 223 aT~v----~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g 278 (431)
T 2v6i_A 223 TTDI----SEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNP 278 (431)
T ss_dssp ECGG----GGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCT
T ss_pred ECch----HHcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHHhhhccCCCC
Confidence 9999 99999999 655 689999999999999999998764
|
| >1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.2e-18 Score=160.76 Aligned_cols=73 Identities=14% Similarity=0.161 Sum_probs=63.6
Q ss_pred CCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEEE
Q 031433 25 GLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIV 104 (159)
Q Consensus 25 ~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLV 104 (159)
+.++||||++++.++.+++.|+.. +.+..+||++. +++++|++| +.+|||
T Consensus 275 ~~~~LVF~~t~~~a~~l~~~L~~~--~~v~~lhg~~~-----~~l~~F~~G-----------------------~~~VLV 324 (1054)
T 1gku_B 275 GTGGIIYARTGEEAEEIYESLKNK--FRIGIVTATKK-----GDYEKFVEG-----------------------EIDHLI 324 (1054)
T ss_dssp CSCEEEEESSHHHHHHHHHTTTTS--SCEEECTTSSS-----HHHHHHHHT-----------------------SCSEEE
T ss_pred CCCEEEEEcCHHHHHHHHHHHhhc--cCeeEEeccHH-----HHHHHHHcC-----------------------CCcEEE
Confidence 478999999999999999999987 69999999983 778999998 899999
Q ss_pred E----ecCCCCCCcCCCCCCCC-CeEEEccCC
Q 031433 105 V----TDACLPLLSSGESAISA-RVLINYELP 131 (159)
Q Consensus 105 ~----Td~~~~~~~rGid~~~v-~~VI~~d~P 131 (159)
| ||+ ++||+|+|+| ++|||||+|
T Consensus 325 aTas~Tdv----~~rGIDip~VI~~VI~~~~P 352 (1054)
T 1gku_B 325 GTAHYYGT----LVRGLDLPERIRFAVFVGCP 352 (1054)
T ss_dssp EECC----------CCSCCTTTCCEEEEESCC
T ss_pred EecCCCCe----eEeccccCCcccEEEEeCCC
Confidence 9 999 9999999996 999999999
|
| >3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ... | Back alignment and structure |
|---|
Probab=99.76 E-value=5e-19 Score=156.34 Aligned_cols=92 Identities=20% Similarity=0.261 Sum_probs=81.2
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEE
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMI 103 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL 103 (159)
.+.++|||||+++.++.+++.|++.+ +.+..+||+|++++ |.++ ..+||
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~~g-~~v~~lHG~l~q~e-------r~~~-----------------------~~~VL 443 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSGLG-INAVAYYRGLDVSV-------IPTI-----------------------GDVVV 443 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHTTT-CCEEEECTTSCGGG-------SCSS-----------------------SCEEE
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHhCC-CcEEEecCCCCHHH-------HHhC-----------------------CCcEE
Confidence 46899999999999999999999998 79999999999875 4444 45999
Q ss_pred EEecCCCCCCcCCCCCCCCCeEE----------Ecc-----------CCCChhHHHhhhhcccCCCCeEE
Q 031433 104 VVTDACLPLLSSGESAISARVLI----------NYE-----------LPTKKETYIRRMTTCLAAGTSFS 152 (159)
Q Consensus 104 V~Td~~~~~~~rGid~~~v~~VI----------~~d-----------~P~~~~~yi~R~GR~~~~~g~~i 152 (159)
||||+ ++||||++ +++|| ||| +|.+.++|+||+||+|| +....
T Consensus 444 VATdV----aerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g~~G~ 507 (666)
T 3o8b_A 444 VATDA----LMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-GRRGI 507 (666)
T ss_dssp EECTT----HHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCEE
T ss_pred EECCh----HHccCCCC-CcEEEecCcccccccccccccccccccccCcCCHHHHHHHhccCCC-CCCCE
Confidence 99999 99999996 99988 788 99999999999999988 44443
|
| >2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A | Back alignment and structure |
|---|
Probab=99.76 E-value=2.3e-18 Score=152.31 Aligned_cols=104 Identities=18% Similarity=0.244 Sum_probs=91.5
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcC--C---------------------------CccEEEeecCCCHHHHHHHHHHHhc
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSNL--A---------------------------DISFSSLHSDLAETERTLILEEFRH 74 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~~--~---------------------------~i~~~~l~~~~~~~~R~~~l~~F~~ 74 (159)
.++++||||++++.++.+++.|.+. . ...+..+||+|++++|..+++.|++
T Consensus 241 ~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~ 320 (702)
T 2p6r_A 241 ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRR 320 (702)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHT
T ss_pred cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHC
Confidence 4689999999999999999998753 0 0147889999999999999999999
Q ss_pred ccccccccccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEE----cc---CCCChhHHHhhhhcccCC
Q 031433 75 TAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLIN----YE---LPTKKETYIRRMTTCLAA 147 (159)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~----~d---~P~~~~~yi~R~GR~~~~ 147 (159)
| .++|||||++ +++|+|+|++++||+ || .|.+..+|.||+||+||.
T Consensus 321 g-----------------------~~~vlvaT~~----l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~ 373 (702)
T 2p6r_A 321 G-----------------------NIKVVVATPT----LAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRP 373 (702)
T ss_dssp T-----------------------SCCEEEECST----TTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCT
T ss_pred C-----------------------CCeEEEECcH----HhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCC
Confidence 8 8999999999 999999999999999 77 799999999999999885
Q ss_pred C----CeEEEE
Q 031433 148 G----TSFSDI 154 (159)
Q Consensus 148 ~----g~~i~~ 154 (159)
+ |.++.+
T Consensus 374 g~~~~G~~~~l 384 (702)
T 2p6r_A 374 GMDERGEAIII 384 (702)
T ss_dssp TTCSCEEEEEE
T ss_pred CCCCCceEEEE
Confidence 4 555554
|
| >2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1 | Back alignment and structure |
|---|
Probab=99.76 E-value=2.7e-18 Score=159.55 Aligned_cols=104 Identities=12% Similarity=0.140 Sum_probs=94.1
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcC-CCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeE
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSNL-ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHM 102 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~~-~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 102 (159)
.+.+++||||++++++.+++.|++. +...+..+||+|++++|.+++++|++| +.+|
T Consensus 811 ~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g-----------------------~~~V 867 (1151)
T 2eyq_A 811 RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQ-----------------------RFNV 867 (1151)
T ss_dssp TTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTT-----------------------SCCE
T ss_pred cCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcC-----------------------CCcE
Confidence 4689999999999999999999986 226899999999999999999999998 8999
Q ss_pred EEEecCCCCCCcCCCCCCCCCeEEEccC-CCChhHHHhhhhcccCCCCeEEEE
Q 031433 103 IVVTDACLPLLSSGESAISARVLINYEL-PTKKETYIRRMTTCLAAGTSFSDI 154 (159)
Q Consensus 103 LV~Td~~~~~~~rGid~~~v~~VI~~d~-P~~~~~yi~R~GR~~~~~g~~i~~ 154 (159)
||||++ +++|+|+|++++||+++. ++++..|.||+||++|.+..+..+
T Consensus 868 LVaT~v----~e~GiDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ 916 (1151)
T 2eyq_A 868 LVCTTI----IETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAW 916 (1151)
T ss_dssp EEESST----TGGGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEE
T ss_pred EEECCc----ceeeecccCCcEEEEeCCCCCCHHHHHHHHhccCcCCCceEEE
Confidence 999999 999999999999999998 579999999999998876444444
|
| >2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.8e-18 Score=153.28 Aligned_cols=104 Identities=19% Similarity=0.176 Sum_probs=91.6
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcCC-----------------C---------------ccEEEeecCCCHHHHHHHHHH
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSNLA-----------------D---------------ISFSSLHSDLAETERTLILEE 71 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~~~-----------------~---------------i~~~~l~~~~~~~~R~~~l~~ 71 (159)
+++++||||++++.++.+++.|.+.. . ..+..+||+|++++|..+++.
T Consensus 236 ~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~ 315 (720)
T 2zj8_A 236 KKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEEN 315 (720)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHH
T ss_pred CCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHH
Confidence 35899999999999999999997531 0 138999999999999999999
Q ss_pred HhcccccccccccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEE----cc----CCCChhHHHhhhhc
Q 031433 72 FRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLIN----YE----LPTKKETYIRRMTT 143 (159)
Q Consensus 72 F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~----~d----~P~~~~~yi~R~GR 143 (159)
|++| .++|||||++ +++|+|+|++++||+ || .|.+..+|.||+||
T Consensus 316 f~~g-----------------------~~~vlvaT~~----l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GR 368 (720)
T 2zj8_A 316 FRKG-----------------------IIKAVVATPT----LSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGR 368 (720)
T ss_dssp HHTT-----------------------SSCEEEECST----TGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTT
T ss_pred HHCC-----------------------CCeEEEECcH----hhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhh
Confidence 9998 8999999999 999999999999999 88 69999999999999
Q ss_pred ccCCC----CeEEEE
Q 031433 144 CLAAG----TSFSDI 154 (159)
Q Consensus 144 ~~~~~----g~~i~~ 154 (159)
+||.+ |.++.+
T Consensus 369 aGR~g~~~~G~~~~l 383 (720)
T 2zj8_A 369 AGRPKYDEVGEGIIV 383 (720)
T ss_dssp BCCTTTCSEEEEEEE
T ss_pred cCCCCCCCCceEEEE
Confidence 98864 445544
|
| >1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=99.74 E-value=2.1e-17 Score=145.42 Aligned_cols=100 Identities=15% Similarity=0.193 Sum_probs=90.4
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEE
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMI 103 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL 103 (159)
.+.|+||||++.+.++.+.+.|...+ +.+..+||+++.++|.+++++|++++. +...+|
T Consensus 415 ~~~k~lIFs~~~~~~~~l~~~l~~~g-~~~~~l~G~~~~~~R~~~i~~F~~~~~--------------------~~~v~L 473 (644)
T 1z3i_X 415 TSDKVVLVSNYTQTLDLFEKLCRNRR-YLYVRLDGTMSIKKRAKIVERFNNPSS--------------------PEFIFM 473 (644)
T ss_dssp CCCEEEEEESCHHHHHHHHHHHHHHT-CCEEEECSSCCHHHHHHHHHHHHSTTC--------------------CCCEEE
T ss_pred CCCEEEEEEccHHHHHHHHHHHHHCC-CCEEEEeCCCCHHHHHHHHHHhcCCCC--------------------CcEEEE
Confidence 46899999999999999999999988 799999999999999999999999720 023589
Q ss_pred EEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCCC
Q 031433 104 VVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAG 148 (159)
Q Consensus 104 V~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~~ 148 (159)
++|++ +++|+|++.+++||+||+||++..|.||+||+.|.+
T Consensus 474 ~st~a----~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~G 514 (644)
T 1z3i_X 474 LSSKA----GGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDG 514 (644)
T ss_dssp EEGGG----SCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTT
T ss_pred Eeccc----ccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcC
Confidence 99999 999999999999999999999999999999995543
|
| >4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A | Back alignment and structure |
|---|
Probab=99.72 E-value=1.8e-17 Score=152.19 Aligned_cols=116 Identities=16% Similarity=0.198 Sum_probs=94.4
Q ss_pred HHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCc--------------------------------------
Q 031433 10 TLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADI-------------------------------------- 51 (159)
Q Consensus 10 ~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i-------------------------------------- 51 (159)
.+..+++.+.. ....++||||++++.|+.+++.|...+..
T Consensus 323 ~~~~li~~l~~--~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~ 400 (997)
T 4a4z_A 323 TWPEIVNYLRK--RELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLER 400 (997)
T ss_dssp HHHHHHHHHHH--TTCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHh--CCCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhc
Confidence 34455554433 34689999999999999999999876521
Q ss_pred cEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCC
Q 031433 52 SFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELP 131 (159)
Q Consensus 52 ~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P 131 (159)
.+..+||+|++.+|..+++.|++| .++|||||++ +++|+|+|+ ..||++++|
T Consensus 401 gi~~~H~gl~~~~R~~v~~~F~~G-----------------------~~kVLvAT~~----~a~GIDiP~-~~VVi~~~~ 452 (997)
T 4a4z_A 401 GIAVHHGGLLPIVKELIEILFSKG-----------------------FIKVLFATET----FAMGLNLPT-RTVIFSSIR 452 (997)
T ss_dssp TEEEECTTSCHHHHHHHHHHHHTT-----------------------CCSEEEECTH----HHHSCCCCC-SEEEESCSE
T ss_pred CeeeecCCCCHHHHHHHHHHHHCC-----------------------CCcEEEEchH----hhCCCCCCC-ceEEEeccc
Confidence 378999999999999999999999 8999999999 999999999 555555555
Q ss_pred C---------ChhHHHhhhhcccCCC--CeEEEEE
Q 031433 132 T---------KKETYIRRMTTCLAAG--TSFSDII 155 (159)
Q Consensus 132 ~---------~~~~yi~R~GR~~~~~--g~~i~~v 155 (159)
. ++.+|+||+||+||.+ +.+..++
T Consensus 453 k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~ 487 (997)
T 4a4z_A 453 KHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIV 487 (997)
T ss_dssp EEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEE
T ss_pred cccCccCCCCCHHHHhHHhcccccCCCCcceEEEE
Confidence 5 9999999999998865 4444443
|
| >1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=99.71 E-value=1.4e-18 Score=155.95 Aligned_cols=106 Identities=11% Similarity=0.110 Sum_probs=90.6
Q ss_pred CCCCCcEEEEeCch--------HHHHHHHHHHhc-C-CCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCC
Q 031433 22 RRPGLPMIVCCSSR--------DELDAVCSAVSN-L-ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDES 91 (159)
Q Consensus 22 ~~~~~k~iIF~ns~--------~~~~~l~~~L~~-~-~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~ 91 (159)
...+.+++|||++. ..++.+++.|.+ . +++.+..+||+|++++|.+++++|++|
T Consensus 575 l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G---------------- 638 (780)
T 1gm5_A 575 VMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEG---------------- 638 (780)
T ss_dssp TTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTT----------------
T ss_pred HhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCC----------------
Confidence 34578999999965 457889999988 2 236899999999999999999999998
Q ss_pred CCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCC-ChhHHHhhhhcccCC--CCeEEEE
Q 031433 92 ETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPT-KKETYIRRMTTCLAA--GTSFSDI 154 (159)
Q Consensus 92 ~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~-~~~~yi~R~GR~~~~--~g~~i~~ 154 (159)
+.+|||||++ +++|+|+|++++||+||.|+ +...|.||+||+||. .|.++.+
T Consensus 639 -------~~~ILVaT~v----ie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill 693 (780)
T 1gm5_A 639 -------RYDILVSTTV----IEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLV 693 (780)
T ss_dssp -------SSSBCCCSSC----CCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECC
T ss_pred -------CCeEEEECCC----CCccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEE
Confidence 8999999999 99999999999999999996 688899999999775 4666544
|
| >3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.71 E-value=6.8e-17 Score=145.19 Aligned_cols=112 Identities=15% Similarity=0.241 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccC
Q 031433 8 QETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQS 87 (159)
Q Consensus 8 ~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~ 87 (159)
...+.++|..+ ...+.|+||||+....++.|.++|...| +.+..+||+++.++|.+++++|+++.
T Consensus 558 ~~~L~~lL~~~---~~~g~kvLIFsq~~~~ld~L~~~L~~~g-~~~~~i~G~~~~~eR~~~i~~F~~~~----------- 622 (800)
T 3mwy_W 558 MVLLDQLLTRL---KKDGHRVLIFSQMVRMLDILGDYLSIKG-INFQRLDGTVPSAQRRISIDHFNSPD----------- 622 (800)
T ss_dssp HHHHHHHHHHH---TTTTCCEEEEESCHHHHHHHHHHHHHHT-CCCEEESTTSCHHHHHHHHHTTSSTT-----------
T ss_pred HHHHHHHHHHH---hhCCCeEEEEechHHHHHHHHHHHHhCC-CCEEEEeCCCCHHHHHHHHHHhhCCC-----------
Confidence 34445555544 3357899999999999999999999988 79999999999999999999999862
Q ss_pred CCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCC
Q 031433 88 GDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAA 147 (159)
Q Consensus 88 ~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~ 147 (159)
.+...+|++|.+ ++.|+|++.+++||+||+|||+..+.||+||+.|.
T Consensus 623 ---------~~~~v~LlSt~a----gg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~Ri 669 (800)
T 3mwy_W 623 ---------SNDFVFLLSTRA----GGLGINLMTADTVVIFDSDWNPQADLQAMARAHRI 669 (800)
T ss_dssp ---------CSCCCEEEEHHH----HTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCS
T ss_pred ---------CCceEEEEeccc----ccCCCCccccceEEEecCCCChhhHHHHHHHHHhc
Confidence 113469999999 99999999999999999999999999999999553
|
| >4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B | Back alignment and structure |
|---|
Probab=99.54 E-value=8.5e-15 Score=140.34 Aligned_cols=100 Identities=18% Similarity=0.262 Sum_probs=85.9
Q ss_pred CCCCCcEEEEeCchHHHHHHHHHHhcC----C--------------------------------CccEEEeecCCCHHHH
Q 031433 22 RRPGLPMIVCCSSRDELDAVCSAVSNL----A--------------------------------DISFSSLHSDLAETER 65 (159)
Q Consensus 22 ~~~~~k~iIF~ns~~~~~~l~~~L~~~----~--------------------------------~i~~~~l~~~~~~~~R 65 (159)
...++++||||+|++.|+.+++.|.+. + ..-+.+.||+|++++|
T Consensus 314 ~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R 393 (1724)
T 4f92_B 314 HAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDR 393 (1724)
T ss_dssp CCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHH
T ss_pred HhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHHH
Confidence 455689999999999999888887642 0 0127889999999999
Q ss_pred HHHHHHHhcccccccccccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEE----ccC------CCChh
Q 031433 66 TLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLIN----YEL------PTKKE 135 (159)
Q Consensus 66 ~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~----~d~------P~~~~ 135 (159)
..+.+.|++| .++|||||+. +++|+|+|..++||. ||. |-++.
T Consensus 394 ~~vE~~F~~G-----------------------~i~vlvaTsT----La~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~ 446 (1724)
T 4f92_B 394 TLVEDLFADK-----------------------HIQVLVSTAT----LAWGVNLPAHTVIIKGTQVYSPEKGRWTELGAL 446 (1724)
T ss_dssp HHHHHHHHTT-----------------------CCCEEEECHH----HHHHSCCCBSEEEEECCEEEETTTTEEEECCHH
T ss_pred HHHHHHHHCC-----------------------CCeEEEEcch----hHhhCCCCCceEEEeCCEEecCcCCCcccCCHH
Confidence 9999999999 8999999999 999999999999995 553 56899
Q ss_pred HHHhhhhcccCCC
Q 031433 136 TYIRRMTTCLAAG 148 (159)
Q Consensus 136 ~yi~R~GR~~~~~ 148 (159)
+|.||+||+||.+
T Consensus 447 ~~~Qm~GRAGR~g 459 (1724)
T 4f92_B 447 DILQMLGRAGRPQ 459 (1724)
T ss_dssp HHHHHHTTBSCTT
T ss_pred HHHHhhhhccCCC
Confidence 9999999998864
|
| >4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B | Back alignment and structure |
|---|
Probab=99.52 E-value=3.2e-14 Score=136.41 Aligned_cols=106 Identities=17% Similarity=0.155 Sum_probs=88.4
Q ss_pred CCCCCcEEEEeCchHHHHHHHHHHhcC----C-----------------------------CccEEEeecCCCHHHHHHH
Q 031433 22 RRPGLPMIVCCSSRDELDAVCSAVSNL----A-----------------------------DISFSSLHSDLAETERTLI 68 (159)
Q Consensus 22 ~~~~~k~iIF~ns~~~~~~l~~~L~~~----~-----------------------------~i~~~~l~~~~~~~~R~~~ 68 (159)
...++++||||+|++.|+.++..|... . ...+..+|++|++++|..+
T Consensus 1152 ~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~~V 1231 (1724)
T 4f92_B 1152 HSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLV 1231 (1724)
T ss_dssp HCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHHHH
T ss_pred hcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCCHHHHHHH
Confidence 456789999999999999888766431 0 0137889999999999999
Q ss_pred HHHHhcccccccccccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEE----------ccCCCChhHHH
Q 031433 69 LEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLIN----------YELPTKKETYI 138 (159)
Q Consensus 69 l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~----------~d~P~~~~~yi 138 (159)
.+.|++| .++|||||+. +++|+|+|...+||. ...|.++.+|+
T Consensus 1232 E~lF~~G-----------------------~i~VLvaT~t----lA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~ 1284 (1724)
T 4f92_B 1232 EQLFSSG-----------------------AIQVVVASRS----LCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVL 1284 (1724)
T ss_dssp HHHHHHT-----------------------SBCEEEEEGG----GSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHH
T ss_pred HHHHHCC-----------------------CCeEEEEChH----HHcCCCCCccEEEEecCccccCcccccCCCCHHHHH
Confidence 9999999 8999999999 999999999999993 34577899999
Q ss_pred hhhhcccCCC----CeEEEE
Q 031433 139 RRMTTCLAAG----TSFSDI 154 (159)
Q Consensus 139 ~R~GR~~~~~----g~~i~~ 154 (159)
||+||+||.+ |.++.+
T Consensus 1285 Qm~GRAGR~g~d~~G~avll 1304 (1724)
T 4f92_B 1285 QMVGHANRPLQDDEGRCVIM 1304 (1724)
T ss_dssp HHHTTBCCTTTCSCEEEEEE
T ss_pred HhhccccCCCCCCceEEEEE
Confidence 9999998864 555543
|
| >2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B* | Back alignment and structure |
|---|
Probab=99.37 E-value=1.3e-12 Score=120.39 Aligned_cols=104 Identities=9% Similarity=0.106 Sum_probs=83.5
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcCC-----------CccE-EEeecC----------C----------CH---------
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSNLA-----------DISF-SSLHSD----------L----------AE--------- 62 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~~~-----------~i~~-~~l~~~----------~----------~~--------- 62 (159)
.+.+++|||+|++.|..+++.|.+.+ .+++ .++|++ + ++
T Consensus 536 ~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~ 615 (1038)
T 2w00_A 536 KGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAA 615 (1038)
T ss_dssp CCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHH
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHH
Confidence 34689999999999999999997643 1344 455542 2 22
Q ss_pred --------------------HHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCC
Q 031433 63 --------------------TERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISA 122 (159)
Q Consensus 63 --------------------~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v 122 (159)
.+|..++++|+++ ++++||+||+ +.+|+|+|.+
T Consensus 616 I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g-----------------------~i~ILIvvd~----lltGfDiP~l 668 (1038)
T 2w00_A 616 IREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQ-----------------------DIDLLIVVGM----FLTGFDAPTL 668 (1038)
T ss_dssp HHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTT-----------------------SSSEEEESST----TSSSCCCTTE
T ss_pred HHHHHHHhcccccccchhhhHHHHHHHHHHHcC-----------------------CCeEEEEcch----HHhCcCcccc
Confidence 1478899999998 8999999999 9999999999
Q ss_pred CeEEEccCCCChhHHHhhhhcccCCC------CeEEEEE
Q 031433 123 RVLINYELPTKKETYIRRMTTCLAAG------TSFSDII 155 (159)
Q Consensus 123 ~~VI~~d~P~~~~~yi~R~GR~~~~~------g~~i~~v 155 (159)
.++++|.|.+...|+||+||++|.. |.++.|+
T Consensus 669 -~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~ 706 (1038)
T 2w00_A 669 -NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFR 706 (1038)
T ss_dssp -EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESS
T ss_pred -cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEcc
Confidence 7889999999999999999996643 5555543
|
| >2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.49 E-value=2.4e-07 Score=79.82 Aligned_cols=88 Identities=18% Similarity=0.181 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCC
Q 031433 9 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSG 88 (159)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~ 88 (159)
+.+.+.+..+.. . .+..++||++|.+.++.+++.|... . ...++.. .+|.+++++|+.+
T Consensus 370 ~~~~~~l~~~~~-~-~~g~~lvff~S~~~~~~v~~~l~~~---~-~~~q~~~--~~~~~~l~~f~~~------------- 428 (540)
T 2vl7_A 370 PIYSILLKRIYE-N-SSKSVLVFFPSYEMLESVRIHLSGI---P-VIEENKK--TRHEEVLELMKTG------------- 428 (540)
T ss_dssp HHHHHHHHHHHH-T-CSSEEEEEESCHHHHHHHHTTCTTS---C-EEESTTT--CCHHHHHHHHHTS-------------
T ss_pred HHHHHHHHHHHH-h-CCCCEEEEeCCHHHHHHHHHHhccC---c-eEecCCC--CcHHHHHHHHhcC-------------
Confidence 345566665654 2 4568999999999999999988653 2 4556654 4688899999886
Q ss_pred CCCCCCCCCCceeEEE--EecCCCCCCcCCCCCCC----CCeEEEccCCC
Q 031433 89 DESETGKDEHKSHMIV--VTDACLPLLSSGESAIS----ARVLINYELPT 132 (159)
Q Consensus 89 ~~~~~~~~~~~~~vLV--~Td~~~~~~~rGid~~~----v~~VI~~d~P~ 132 (159)
. .||+ +|+. +++|||+++ +++||++++|.
T Consensus 429 ----------~-~il~~V~~~~----~~EGiD~~~~~~~~~~Vii~~lPf 463 (540)
T 2vl7_A 429 ----------K-YLVMLVMRAK----ESEGVEFREKENLFESLVLAGLPY 463 (540)
T ss_dssp ----------C-CEEEEEC-------------------CEEEEEEESCCC
T ss_pred ----------C-eEEEEEecCc----eecceecCCCcccccEEEEECCCC
Confidence 3 5666 8899 999999997 89999999994
|
| >2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.00 E-value=2.8e-05 Score=70.81 Aligned_cols=44 Identities=14% Similarity=0.174 Sum_probs=36.8
Q ss_pred eecCcHHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHh
Q 031433 3 VSFTFQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVS 46 (159)
Q Consensus 3 v~~~~~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~ 46 (159)
||.+..++...+.+.+......+.++||+|.|.+..+.|++.|.
T Consensus 421 vy~t~~~K~~AIv~eI~~~~~~GqPVLVgT~SIe~SE~LS~~L~ 464 (997)
T 2ipc_A 421 VYRTEKGKFYAVVEEIAEKYERGQPVLVGTISIEKSERLSQMLK 464 (997)
T ss_dssp EESSHHHHHHHHHHHHHHHHHHTCCEEEECSSHHHHHHHHHHHH
T ss_pred EEcCHHHHHHHHHHHHHHHHHCCCCEEEEeCCHHHHHHHHHHHh
Confidence 56667777777777776545668999999999999999999999
|
| >3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A | Back alignment and structure |
|---|
Probab=98.00 E-value=7.1e-05 Score=60.95 Aligned_cols=101 Identities=9% Similarity=0.105 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccC
Q 031433 8 QETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQS 87 (159)
Q Consensus 8 ~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~ 87 (159)
...|.+||..+ ...+.|++||++..++.+.+.++|...+ +...-+.|....++++. .+.
T Consensus 111 f~~L~~LL~~l---~~~~~kVLIfsq~t~~LDilE~~l~~~~-~~y~RlDG~~~~~~~k~-----~~~------------ 169 (328)
T 3hgt_A 111 FSVLRDLINLV---QEYETETAIVCRPGRTMDLLEALLLGNK-VHIKRYDGHSIKSAAAA-----NDF------------ 169 (328)
T ss_dssp HHHHHHHHHHH---TTSCEEEEEEECSTHHHHHHHHHHTTSS-CEEEESSSCCC------------CC------------
T ss_pred HHHHHHHHHHH---HhCCCEEEEEECChhHHHHHHHHHhcCC-CceEeCCCCchhhhhhc-----ccC------------
Confidence 33444555544 3357899999999999999999999987 58889998855432111 122
Q ss_pred CCCCCCCCCCCceeEEEEecCCCCCCcCCCC-----CCCCCeEEEccCCCChhHH-Hhhhhcc
Q 031433 88 GDESETGKDEHKSHMIVVTDACLPLLSSGES-----AISARVLINYELPTKKETY-IRRMTTC 144 (159)
Q Consensus 88 ~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid-----~~~v~~VI~~d~P~~~~~y-i~R~GR~ 144 (159)
...+.+.|.. ..-|++ ...++.||-||.-|++..= +|.+-|+
T Consensus 170 -----------~~~i~Lltsa----g~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~ 217 (328)
T 3hgt_A 170 -----------SCTVHLFSSE----GINFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQY 217 (328)
T ss_dssp -----------SEEEEEEESS----CCCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCC
T ss_pred -----------CceEEEEECC----CCCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHH
Confidence 4555555666 566675 7899999999999999874 7766555
|
| >4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0015 Score=57.09 Aligned_cols=89 Identities=20% Similarity=0.209 Sum_probs=60.4
Q ss_pred HHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCC
Q 031433 10 TLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGD 89 (159)
Q Consensus 10 ~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~ 89 (159)
.+.+.+..+.. . .+..++||++|.+..+.+++.|+.. ..- ...+++..+|..++++|+ +
T Consensus 435 ~~~~~i~~l~~-~-~~g~~lvlF~Sy~~l~~v~~~l~~~---~~~-~~q~~~~~~~~~ll~~f~-~-------------- 493 (620)
T 4a15_A 435 RMATVIEDIIL-K-VKKNTIVYFPSYSLMDRVENRVSFE---HMK-EYRGIDQKELYSMLKKFR-R-------------- 493 (620)
T ss_dssp HHHHHHHHHHH-H-HCSCEEEEESCHHHHHHHTSSCCSC---CEE-CCTTCCSHHHHHHHHHHT-T--------------
T ss_pred HHHHHHHHHHH-h-CCCCEEEEeCCHHHHHHHHHHHHhc---chh-ccCCCChhHHHHHHHHhc-c--------------
Confidence 34444444543 2 2467999999999999999998732 222 666777788999999999 6
Q ss_pred CCCCCCCCCceeEEEEec--CCCCCCcCCCCCCC--CCeEEEccCCC
Q 031433 90 ESETGKDEHKSHMIVVTD--ACLPLLSSGESAIS--ARVLINYELPT 132 (159)
Q Consensus 90 ~~~~~~~~~~~~vLV~Td--~~~~~~~rGid~~~--v~~VI~~d~P~ 132 (159)
...||+++. . +.+|+|+++ .+.||...+|.
T Consensus 494 ---------~~~vL~~v~~gs----f~EGiD~~g~~l~~viI~~lPf 527 (620)
T 4a15_A 494 ---------DHGTIFAVSGGR----LSEGINFPGNELEMIILAGLPF 527 (620)
T ss_dssp ---------SCCEEEEETTSC----C--------CCCCEEEESSCCC
T ss_pred ---------CCcEEEEEecCc----eeccccCCCCceEEEEEEcCCC
Confidence 678999984 7 999999976 56799988884
|
| >1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=96.27 E-value=0.019 Score=51.55 Aligned_cols=78 Identities=14% Similarity=0.099 Sum_probs=65.9
Q ss_pred CCcEEEEeCchHHHHHHHHHHhcC----CCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCce
Q 031433 25 GLPMIVCCSSRDELDAVCSAVSNL----ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKS 100 (159)
Q Consensus 25 ~~k~iIF~ns~~~~~~l~~~L~~~----~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (159)
+.+++|.++++.-++..++.+++. + +.+..+||+++..+|...++...+| ..
T Consensus 417 g~qvlvlaPtr~La~Q~~~~l~~~~~~~g-i~v~~l~G~~~~~~r~~~~~~l~~g-----------------------~~ 472 (780)
T 1gm5_A 417 GFQTAFMVPTSILAIQHYRRTVESFSKFN-IHVALLIGATTPSEKEKIKSGLRNG-----------------------QI 472 (780)
T ss_dssp TSCEEEECSCHHHHHHHHHHHHHHHTCSS-CCEEECCSSSCHHHHHHHHHHHHSS-----------------------CC
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhhhcC-ceEEEEeCCCCHHHHHHHHHHHhcC-----------------------CC
Confidence 589999999999888877776653 5 7999999999999999999999998 89
Q ss_pred eEEEEecCCCCCCcCCCCCCCCCeEEEcc
Q 031433 101 HMIVVTDACLPLLSSGESAISARVLINYE 129 (159)
Q Consensus 101 ~vLV~Td~~~~~~~rGid~~~v~~VI~~d 129 (159)
+|+|+|.. ++...+.+.++++||--+
T Consensus 473 ~IvVgT~~---ll~~~~~~~~l~lVVIDE 498 (780)
T 1gm5_A 473 DVVIGTHA---LIQEDVHFKNLGLVIIDE 498 (780)
T ss_dssp CEEEECTT---HHHHCCCCSCCCEEEEES
T ss_pred CEEEECHH---HHhhhhhccCCceEEecc
Confidence 99999986 355678889999888544
|
| >3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* | Back alignment and structure |
|---|
Probab=96.18 E-value=0.031 Score=45.42 Aligned_cols=84 Identities=10% Similarity=0.120 Sum_probs=65.4
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhc---CCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCc
Q 031433 23 RPGLPMIVCCSSRDELDAVCSAVSN---LADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHK 99 (159)
Q Consensus 23 ~~~~k~iIF~ns~~~~~~l~~~L~~---~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (159)
..+.++||.++++.-+..+++.++. .+ +.+..+||+.+..+|...++.+..+ .
T Consensus 62 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~-~~v~~~~g~~~~~~~~~~~~~l~~~-----------------------~ 117 (414)
T 3oiy_A 62 RKGKKSALVFPTVTLVKQTLERLQKLADEK-VKIFGFYSSMKKEEKEKFEKSFEED-----------------------D 117 (414)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHHHCCSS-CCEEECCTTSCHHHHHHHHHHHHHT-----------------------C
T ss_pred cCCCEEEEEECCHHHHHHHHHHHHHHccCC-ceEEEEECCCChhhHHHHHHHhhcC-----------------------C
Confidence 4568999999999999999999988 35 7999999999999999999999887 7
Q ss_pred eeEEEEecCCCCCCcCCCCCCCCCeEEEccC
Q 031433 100 SHMIVVTDACLPLLSSGESAISARVLINYEL 130 (159)
Q Consensus 100 ~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~ 130 (159)
.+|+|+|+-.+--.-+-++...+++||.=+.
T Consensus 118 ~~Iiv~Tp~~l~~~l~~~~~~~~~~iViDEa 148 (414)
T 3oiy_A 118 YHILVFSTQFVSKNREKLSQKRFDFVFVDDV 148 (414)
T ss_dssp CSEEEEEHHHHHHCHHHHTTCCCSEEEESCH
T ss_pred CCEEEECHHHHHHHHHHhccccccEEEEeCh
Confidence 8999999752100011255567888875443
|
| >3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1* | Back alignment and structure |
|---|
Probab=95.59 E-value=0.064 Score=45.87 Aligned_cols=88 Identities=13% Similarity=0.115 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCC
Q 031433 9 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSG 88 (159)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~ 88 (159)
+.+.+.+..+.. . .+..++||++|.+..+.+++. .+ ..+..=..+++. ...++.|+..
T Consensus 379 ~~l~~~i~~l~~-~-~~g~~lvlF~Sy~~l~~v~~~---~~-~~v~~q~~~~~~---~~~~~~~~~~------------- 436 (551)
T 3crv_A 379 KRYADYLLKIYF-Q-AKANVLVVFPSYEIMDRVMSR---IS-LPKYVESEDSSV---EDLYSAISAN------------- 436 (551)
T ss_dssp HHHHHHHHHHHH-H-CSSEEEEEESCHHHHHHHHTT---CC-SSEEECCSSCCH---HHHHHHTTSS-------------
T ss_pred HHHHHHHHHHHH-h-CCCCEEEEecCHHHHHHHHHh---cC-CcEEEcCCCCCH---HHHHHHHHhc-------------
Confidence 445555555554 2 345899999999999998873 23 344443345554 4467777643
Q ss_pred CCCCCCCCCCceeEEEEe--cCCCCCCcCCCCCC-----CCCeEEEccCCC
Q 031433 89 DESETGKDEHKSHMIVVT--DACLPLLSSGESAI-----SARVLINYELPT 132 (159)
Q Consensus 89 ~~~~~~~~~~~~~vLV~T--d~~~~~~~rGid~~-----~v~~VI~~d~P~ 132 (159)
.-.||++| .- +.+|||++ .++.||...+|.
T Consensus 437 ----------~~~vl~~v~gg~----~~EGiD~~d~~g~~l~~viI~~lPf 473 (551)
T 3crv_A 437 ----------NKVLIGSVGKGK----LAEGIELRNNDRSLISDVVIVGIPY 473 (551)
T ss_dssp ----------SSCEEEEESSCC----SCCSSCCEETTEESEEEEEEESCCC
T ss_pred ----------CCeEEEEEecce----ecccccccccCCcceeEEEEEcCCC
Confidence 34799998 57 99999999 477899888774
|
| >4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A | Back alignment and structure |
|---|
Probab=94.54 E-value=0.15 Score=47.52 Aligned_cols=84 Identities=12% Similarity=0.165 Sum_probs=66.1
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhcCC--CccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCce
Q 031433 23 RPGLPMIVCCSSRDELDAVCSAVSNLA--DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKS 100 (159)
Q Consensus 23 ~~~~k~iIF~ns~~~~~~l~~~L~~~~--~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (159)
..+.++||.++++.-+..+++.+++.+ .+.+..+||+++..+|...++.+..+ ..
T Consensus 119 ~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g-----------------------~~ 175 (1104)
T 4ddu_A 119 RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEED-----------------------DY 175 (1104)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTS-----------------------CC
T ss_pred hcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCC-----------------------CC
Confidence 456899999999999999999999832 26999999999999999999999987 79
Q ss_pred eEEEEecCCCC-CCcCCCCCCCCCeEEEccC
Q 031433 101 HMIVVTDACLP-LLSSGESAISARVLINYEL 130 (159)
Q Consensus 101 ~vLV~Td~~~~-~~~rGid~~~v~~VI~~d~ 130 (159)
+|+|+|.-.+- ++.+ ++..++++||.=+.
T Consensus 176 ~IlV~Tp~rL~~~l~~-l~~~~l~~lViDEa 205 (1104)
T 4ddu_A 176 HILVFSTQFVSKNREK-LSQKRFDFVFVDDV 205 (1104)
T ss_dssp SEEEEEHHHHHHSHHH-HHTSCCSEEEESCH
T ss_pred CEEEECHHHHHHHHHh-hcccCcCEEEEeCC
Confidence 99999975210 0111 45678888886443
|
| >2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1 | Back alignment and structure |
|---|
Probab=94.24 E-value=0.14 Score=47.90 Aligned_cols=77 Identities=17% Similarity=0.115 Sum_probs=64.5
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcC----CCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCc
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSNL----ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHK 99 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~~----~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (159)
.+++++|.|+|+.-++..++.+++. + +.+..+++..+..++...++....| .
T Consensus 651 ~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~-i~v~~l~~~~~~~~~~~~~~~l~~g-----------------------~ 706 (1151)
T 2eyq_A 651 NHKQVAVLVPTTLLAQQHYDNFRDRFANWP-VRIEMISRFRSAKEQTQILAEVAEG-----------------------K 706 (1151)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHHSTTTT-CCEEEESTTSCHHHHHHHHHHHHTT-----------------------C
T ss_pred hCCeEEEEechHHHHHHHHHHHHHHhhcCC-CeEEEEeCCCCHHHHHHHHHHHhcC-----------------------C
Confidence 4679999999999998888877643 4 6899999999999999999999998 8
Q ss_pred eeEEEEecCCCCCCcCCCCCCCCCeEEE
Q 031433 100 SHMIVVTDACLPLLSSGESAISARVLIN 127 (159)
Q Consensus 100 ~~vLV~Td~~~~~~~rGid~~~v~~VI~ 127 (159)
.+|+|+|.- ++...+.+.++.+||-
T Consensus 707 ~dIvV~T~~---ll~~~~~~~~l~lvIi 731 (1151)
T 2eyq_A 707 IDILIGTHK---LLQSDVKFKDLGLLIV 731 (1151)
T ss_dssp CSEEEECTH---HHHSCCCCSSEEEEEE
T ss_pred CCEEEECHH---HHhCCccccccceEEE
Confidence 999999954 2666688888888774
|
| >1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A* | Back alignment and structure |
|---|
Probab=93.99 E-value=0.32 Score=41.30 Aligned_cols=60 Identities=7% Similarity=0.105 Sum_probs=53.5
Q ss_pred CCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEEE
Q 031433 25 GLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIV 104 (159)
Q Consensus 25 ~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLV 104 (159)
..++||.++++.-++...+.|+..+ +.+..+|++.+..++...++....+ ..++++
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~~g-i~~~~l~~~~~~~~~~~~~~~~~~~-----------------------~~~ilv 120 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQANG-VAAACLNSTQTREQQLEVMTGCRTG-----------------------QIRLLY 120 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTT-CCEEEECTTSCHHHHHHHHHHHHHT-----------------------CCSEEE
T ss_pred CCCEEEECChHHHHHHHHHHHHHcC-CcEEEEeCCCCHHHHHHHHHHHhcC-----------------------CCCEEE
Confidence 3679999999999999999999987 7999999999999999999999887 788888
Q ss_pred EecC
Q 031433 105 VTDA 108 (159)
Q Consensus 105 ~Td~ 108 (159)
+|+-
T Consensus 121 ~Tpe 124 (523)
T 1oyw_A 121 IAPE 124 (523)
T ss_dssp ECHH
T ss_pred ECHH
Confidence 8853
|
| >3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.87 E-value=0.5 Score=35.84 Aligned_cols=85 Identities=18% Similarity=0.258 Sum_probs=57.2
Q ss_pred HHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcC----CCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCC
Q 031433 14 LLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL----ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGD 89 (159)
Q Consensus 14 ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~----~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~ 89 (159)
++..+.. ...+.++||.|+++.-++.+++.+++. + +.+..++|+.+...+...+ ..
T Consensus 101 il~~l~~-~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~---~~--------------- 160 (249)
T 3ber_A 101 ILNALLE-TPQRLFALVLTPTRELAFQISEQFEALGSSIG-VQSAVIVGGIDSMSQSLAL---AK--------------- 160 (249)
T ss_dssp HHHHHHH-SCCSSCEEEECSSHHHHHHHHHHHHHHHGGGT-CCEEEECTTSCHHHHHHHH---HT---------------
T ss_pred HHHHHhc-CCCCceEEEEeCCHHHHHHHHHHHHHHhccCC-eeEEEEECCCChHHHHHHh---cC---------------
Confidence 4444443 444578999999999998888777654 4 6899999998866544322 23
Q ss_pred CCCCCCCCCceeEEEEecCCCC-CC--cCCCCCCCCCeEEE
Q 031433 90 ESETGKDEHKSHMIVVTDACLP-LL--SSGESAISARVLIN 127 (159)
Q Consensus 90 ~~~~~~~~~~~~vLV~Td~~~~-~~--~rGid~~~v~~VI~ 127 (159)
..+|+|+|.-.+- ++ ..++++..+++||.
T Consensus 161 ---------~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lVi 192 (249)
T 3ber_A 161 ---------KPHIIIATPGRLIDHLENTKGFNLRALKYLVM 192 (249)
T ss_dssp ---------CCSEEEECHHHHHHHHHHSTTCCCTTCCEEEE
T ss_pred ---------CCCEEEECHHHHHHHHHcCCCcCccccCEEEE
Confidence 5789999953100 01 14567888888775
|
| >1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=93.50 E-value=0.46 Score=34.35 Aligned_cols=78 Identities=8% Similarity=0.158 Sum_probs=52.6
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhcC----CCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCC
Q 031433 23 RPGLPMIVCCSSRDELDAVCSAVSNL----ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEH 98 (159)
Q Consensus 23 ~~~~k~iIF~ns~~~~~~l~~~L~~~----~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (159)
..+.++||.|+++.-++.+.+.+++. +.+.+..++|+.+..+... .+..
T Consensus 69 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~------------------------ 121 (206)
T 1vec_A 69 KDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIM---RLDD------------------------ 121 (206)
T ss_dssp SCSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHH---HTTS------------------------
T ss_pred CCCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHH---hcCC------------------------
Confidence 34578999999999999888887653 1468899999988665432 2222
Q ss_pred ceeEEEEecCCC-CCCc-CCCCCCCCCeEEE
Q 031433 99 KSHMIVVTDACL-PLLS-SGESAISARVLIN 127 (159)
Q Consensus 99 ~~~vLV~Td~~~-~~~~-rGid~~~v~~VI~ 127 (159)
..+|+|+|.-.+ ..+. ...++..++++|.
T Consensus 122 ~~~i~v~T~~~l~~~~~~~~~~~~~~~~lVi 152 (206)
T 1vec_A 122 TVHVVIATPGRILDLIKKGVAKVDHVQMIVL 152 (206)
T ss_dssp CCSEEEECHHHHHHHHHTTCSCCTTCCEEEE
T ss_pred CCCEEEeCHHHHHHHHHcCCcCcccCCEEEE
Confidence 578999997310 0012 2356778888774
|
| >3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1} | Back alignment and structure |
|---|
Probab=93.40 E-value=0.18 Score=33.57 Aligned_cols=39 Identities=13% Similarity=0.172 Sum_probs=34.4
Q ss_pred CCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCC
Q 031433 22 RRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 61 (159)
Q Consensus 22 ~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~ 61 (159)
..+++++++||++-..+...+..|+..|+ ++..+.|++.
T Consensus 52 l~~~~~ivvyC~~G~rs~~aa~~L~~~G~-~v~~l~GG~~ 90 (108)
T 3gk5_A 52 LERDKKYAVICAHGNRSAAAVEFLSQLGL-NIVDVEGGIQ 90 (108)
T ss_dssp SCTTSCEEEECSSSHHHHHHHHHHHTTTC-CEEEETTHHH
T ss_pred CCCCCeEEEEcCCCcHHHHHHHHHHHcCC-CEEEEcCcHH
Confidence 35678999999999999999999999997 9999999863
|
| >1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=93.05 E-value=0.56 Score=34.35 Aligned_cols=77 Identities=12% Similarity=0.234 Sum_probs=54.3
Q ss_pred CCcEEEEeCchHHHHHHHHHHhcC----CCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCce
Q 031433 25 GLPMIVCCSSRDELDAVCSAVSNL----ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKS 100 (159)
Q Consensus 25 ~~k~iIF~ns~~~~~~l~~~L~~~----~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (159)
..++||.|+++.-++.+++.+++. +.+.+..++|+.+..++.+. +.++ ..
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~---~~~~-----------------------~~ 135 (220)
T 1t6n_A 82 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV---LKKN-----------------------CP 135 (220)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHH---HHHS-----------------------CC
T ss_pred CEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHH---HhcC-----------------------CC
Confidence 458999999999999888877764 13789999999987765543 3444 57
Q ss_pred eEEEEecCCCC-CC-cCCCCCCCCCeEEE
Q 031433 101 HMIVVTDACLP-LL-SSGESAISARVLIN 127 (159)
Q Consensus 101 ~vLV~Td~~~~-~~-~rGid~~~v~~VI~ 127 (159)
+|+|+|.-.+- ++ ...+++..+++||.
T Consensus 136 ~i~v~T~~~l~~~~~~~~~~~~~~~~lVi 164 (220)
T 1t6n_A 136 HIVVGTPGRILALARNKSLNLKHIKHFIL 164 (220)
T ss_dssp SEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred CEEEeCHHHHHHHHHhCCCCcccCCEEEE
Confidence 89999963100 01 23467788888774
|
| >2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* | Back alignment and structure |
|---|
Probab=92.92 E-value=0.34 Score=36.09 Aligned_cols=78 Identities=12% Similarity=0.143 Sum_probs=54.0
Q ss_pred CCCCCcEEEEeCchHHHHHHHHHHhcCC----CccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCC
Q 031433 22 RRPGLPMIVCCSSRDELDAVCSAVSNLA----DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDE 97 (159)
Q Consensus 22 ~~~~~k~iIF~ns~~~~~~l~~~L~~~~----~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (159)
...+.++||.|++++-++.+.+.+++.+ .+.+..++|+.+..++...+ .
T Consensus 89 ~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~----------------------- 141 (230)
T 2oxc_A 89 ENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL----K----------------------- 141 (230)
T ss_dssp TSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT----T-----------------------
T ss_pred cCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc----c-----------------------
Confidence 3456799999999999999888887642 36889999998877654332 1
Q ss_pred CceeEEEEecCCCCC-C-cCCCCCCCCCeEEE
Q 031433 98 HKSHMIVVTDACLPL-L-SSGESAISARVLIN 127 (159)
Q Consensus 98 ~~~~vLV~Td~~~~~-~-~rGid~~~v~~VI~ 127 (159)
..+|+|+|.-.+-. + ...+++..+++||.
T Consensus 142 -~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lVi 172 (230)
T 2oxc_A 142 -KCHIAVGSPGRIKQLIELDYLNPGSIRLFIL 172 (230)
T ss_dssp -SCSEEEECHHHHHHHHHTTSSCGGGCCEEEE
T ss_pred -CCCEEEECHHHHHHHHhcCCcccccCCEEEe
Confidence 47899999741000 1 23456677777774
|
| >2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A | Back alignment and structure |
|---|
Probab=92.65 E-value=0.48 Score=29.74 Aligned_cols=52 Identities=12% Similarity=0.102 Sum_probs=37.1
Q ss_pred cHHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCC
Q 031433 7 FQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 61 (159)
Q Consensus 7 ~~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~ 61 (159)
+.+.+.+.+..+. ..+.++++++|++-..+...+..|++.|+-++..+ |++.
T Consensus 25 p~~~l~~~~~~l~--~~~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l-GG~~ 76 (85)
T 2jtq_A 25 PLKEVKERIATAV--PDKNDTVKVYCNAGRQSGQAKEILSEMGYTHVENA-GGLK 76 (85)
T ss_dssp CHHHHHHHHHHHC--CCTTSEEEEEESSSHHHHHHHHHHHHTTCSSEEEE-EETT
T ss_pred CHHHHHHHHHHhC--CCCCCcEEEEcCCCchHHHHHHHHHHcCCCCEEec-cCHH
Confidence 3444555555431 24568999999999899999999999985456666 7753
|
| >2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A* | Back alignment and structure |
|---|
Probab=92.47 E-value=0.29 Score=42.41 Aligned_cols=60 Identities=17% Similarity=0.201 Sum_probs=52.7
Q ss_pred CCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHh--cccccccccccccCCCCCCCCCCCCceeE
Q 031433 25 GLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFR--HTAMKWNQKVTEQSGDESETGKDEHKSHM 102 (159)
Q Consensus 25 ~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 102 (159)
..++||.++++.-++...+.|+..| +.+..++|+++..++..+++.+. .+ ..+|
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~~~g-i~~~~l~~~~~~~~~~~~~~~l~~~~~-----------------------~~~I 139 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLKQLG-ISATMLNASSSKEHVKWVHAEMVNKNS-----------------------ELKL 139 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHHT-CCEEECCSSCCHHHHHHHHHHHHCTTC-----------------------CCCE
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhcC-CcEEEEeCCCCHHHHHHHHHHhhcccC-----------------------CCCE
Confidence 4689999999999999999999987 79999999999999998888884 34 6889
Q ss_pred EEEecC
Q 031433 103 IVVTDA 108 (159)
Q Consensus 103 LV~Td~ 108 (159)
+++|+-
T Consensus 140 lv~Tpe 145 (591)
T 2v1x_A 140 IYVTPE 145 (591)
T ss_dssp EEECHH
T ss_pred EEEChh
Confidence 999873
|
| >3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A | Back alignment and structure |
|---|
Probab=92.06 E-value=0.23 Score=32.83 Aligned_cols=38 Identities=11% Similarity=0.093 Sum_probs=32.6
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCC
Q 031433 23 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDL 60 (159)
Q Consensus 23 ~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~ 60 (159)
.+.++++|||++-..+...+..|+..|+-++..|.|++
T Consensus 50 ~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~ 87 (106)
T 3hix_A 50 EKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGL 87 (106)
T ss_dssp CTTSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHH
T ss_pred CCCCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCH
Confidence 45689999999999999999999999854688888875
|
| >3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp} | Back alignment and structure |
|---|
Probab=91.57 E-value=0.2 Score=32.69 Aligned_cols=39 Identities=5% Similarity=0.064 Sum_probs=33.9
Q ss_pred CCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCC
Q 031433 22 RRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 61 (159)
Q Consensus 22 ~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~ 61 (159)
..+.+++++||.+-......+..|+..|+ ++..+.|++.
T Consensus 53 l~~~~~ivvyC~~g~rs~~a~~~L~~~G~-~v~~l~GG~~ 91 (100)
T 3foj_A 53 FNDNETYYIICKAGGRSAQVVQYLEQNGV-NAVNVEGGMD 91 (100)
T ss_dssp SCTTSEEEEECSSSHHHHHHHHHHHTTTC-EEEEETTHHH
T ss_pred CCCCCcEEEEcCCCchHHHHHHHHHHCCC-CEEEecccHH
Confidence 34568999999999999999999999996 9999998863
|
| >3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* | Back alignment and structure |
|---|
Probab=91.51 E-value=0.24 Score=37.13 Aligned_cols=78 Identities=10% Similarity=0.146 Sum_probs=46.1
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcCC---CccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCce
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSNLA---DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKS 100 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~~~---~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (159)
.+.++||.++++.-++.+.+.+++.+ .+.+..++|+.+.... .+.+..+ ..
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~l~~~-----------------------~~ 150 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNE---MQKLQAE-----------------------AP 150 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------C-----------------------CC
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHH---HHHHhcC-----------------------CC
Confidence 56799999999999998888887642 2577888887654432 2333443 58
Q ss_pred eEEEEecCCC-CCCcC-CCCCCCCCeEEE
Q 031433 101 HMIVVTDACL-PLLSS-GESAISARVLIN 127 (159)
Q Consensus 101 ~vLV~Td~~~-~~~~r-Gid~~~v~~VI~ 127 (159)
+|+|+|.-.+ -++.+ .+++..+++||.
T Consensus 151 ~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVi 179 (237)
T 3bor_A 151 HIVVGTPGRVFDMLNRRYLSPKWIKMFVL 179 (237)
T ss_dssp SEEEECHHHHHHHHHTTSSCSTTCCEEEE
T ss_pred CEEEECHHHHHHHHHhCCcCcccCcEEEE
Confidence 8999994200 00333 466778888774
|
| >3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=91.18 E-value=0.37 Score=32.59 Aligned_cols=35 Identities=11% Similarity=0.226 Sum_probs=31.0
Q ss_pred CcEEEEe-CchHHHHHHHHHHhcCCCccEEEeecCCC
Q 031433 26 LPMIVCC-SSRDELDAVCSAVSNLADISFSSLHSDLA 61 (159)
Q Consensus 26 ~k~iIF~-ns~~~~~~l~~~L~~~~~i~~~~l~~~~~ 61 (159)
+++||+| ++-..+...+..|+..|+ ++..|.|++.
T Consensus 90 ~~ivvyC~~~G~rs~~a~~~L~~~G~-~v~~l~GG~~ 125 (134)
T 3g5j_A 90 DNIVIYCARGGMRSGSIVNLLSSLGV-NVYQLEGGYK 125 (134)
T ss_dssp SEEEEECSSSSHHHHHHHHHHHHTTC-CCEEETTHHH
T ss_pred CeEEEEECCCChHHHHHHHHHHHcCC-ceEEEeCcHH
Confidence 8999999 587888899999999996 9999999874
|
| >2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A | Back alignment and structure |
|---|
Probab=91.01 E-value=0.9 Score=32.69 Aligned_cols=77 Identities=13% Similarity=0.066 Sum_probs=53.0
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcCC-CccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeE
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSNLA-DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHM 102 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~~~-~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 102 (159)
.+.++||.|+++.-++.+.+.+++.. .+.+..++|+.+.......+ .. ..+|
T Consensus 71 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~------------------------~~~i 123 (207)
T 2gxq_A 71 RKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEAL---LR------------------------GADA 123 (207)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHH---HH------------------------CCSE
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHh---hC------------------------CCCE
Confidence 46789999999999999999988762 36888999988765543332 23 4789
Q ss_pred EEEecCCCC-CC-cCCCCCCCCCeEEE
Q 031433 103 IVVTDACLP-LL-SSGESAISARVLIN 127 (159)
Q Consensus 103 LV~Td~~~~-~~-~rGid~~~v~~VI~ 127 (159)
+|+|.-.+- ++ ...+++..+++||.
T Consensus 124 ~v~T~~~l~~~~~~~~~~~~~~~~iVi 150 (207)
T 2gxq_A 124 VVATPGRALDYLRQGVLDLSRVEVAVL 150 (207)
T ss_dssp EEECHHHHHHHHHHTSSCCTTCSEEEE
T ss_pred EEECHHHHHHHHHcCCcchhhceEEEE
Confidence 999962100 01 22456778888774
|
| >1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3 | Back alignment and structure |
|---|
Probab=90.88 E-value=0.22 Score=34.20 Aligned_cols=39 Identities=10% Similarity=0.077 Sum_probs=33.1
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCC
Q 031433 23 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 61 (159)
Q Consensus 23 ~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~ 61 (159)
.++++++|||++-..+...+..|...|+-++..+.|++.
T Consensus 80 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 118 (129)
T 1tq1_A 80 GQSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYS 118 (129)
T ss_dssp CTTSSEEEEESSCSHHHHHHHHHHHHHCCSEEEEECCHH
T ss_pred CCCCeEEEECCCCcHHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 457899999999888999999999988545888999873
|
| >1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A | Back alignment and structure |
|---|
Probab=90.84 E-value=1.1 Score=35.36 Aligned_cols=79 Identities=10% Similarity=0.194 Sum_probs=55.0
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhcC----CCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCC
Q 031433 23 RPGLPMIVCCSSRDELDAVCSAVSNL----ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEH 98 (159)
Q Consensus 23 ~~~~k~iIF~ns~~~~~~l~~~L~~~----~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (159)
..+.++||.|+++.-++.+++.+++. +.+.+..++|+.+..+.... +..+
T Consensus 74 ~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~----------------------- 127 (391)
T 1xti_A 74 TGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV---LKKN----------------------- 127 (391)
T ss_dssp TTCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHH---HHHS-----------------------
T ss_pred CCCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHH---HhcC-----------------------
Confidence 34579999999999999888877764 23789999999987765543 3344
Q ss_pred ceeEEEEecCCCC--CCcCCCCCCCCCeEEE
Q 031433 99 KSHMIVVTDACLP--LLSSGESAISARVLIN 127 (159)
Q Consensus 99 ~~~vLV~Td~~~~--~~~rGid~~~v~~VI~ 127 (159)
..+|+|+|.-.+- +....+++..+++||.
T Consensus 128 ~~~iiv~T~~~l~~~~~~~~~~~~~~~~vVi 158 (391)
T 1xti_A 128 CPHIVVGTPGRILALARNKSLNLKHIKHFIL 158 (391)
T ss_dssp CCSEEEECHHHHHHHHHTTSSCCTTCSEEEE
T ss_pred CCCEEEECHHHHHHHHHcCCccccccCEEEE
Confidence 5789999963100 0123456778888774
|
| >3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.47 E-value=0.81 Score=33.72 Aligned_cols=77 Identities=16% Similarity=0.154 Sum_probs=50.0
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcC--CCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCcee
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSNL--ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSH 101 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~~--~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (159)
.+.++||.+++++-++.+.+.+++. ..+.+..++|+.+..++. +.+.+ ..+
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~------------------------~~~ 145 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQI---EDISK------------------------GVD 145 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CH---HHHHS------------------------CCS
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHH---HHhcC------------------------CCC
Confidence 5688999999999999999888874 236889999887655443 23334 478
Q ss_pred EEEEecCCCC--CCcCCCCCCCCCeEEE
Q 031433 102 MIVVTDACLP--LLSSGESAISARVLIN 127 (159)
Q Consensus 102 vLV~Td~~~~--~~~rGid~~~v~~VI~ 127 (159)
|+|+|.-.+- +....+++.++++||.
T Consensus 146 iiv~Tp~~l~~~~~~~~~~~~~~~~lVi 173 (228)
T 3iuy_A 146 IIIATPGRLNDLQMNNSVNLRSITYLVI 173 (228)
T ss_dssp EEEECHHHHHHHHHTTCCCCTTCCEEEE
T ss_pred EEEECHHHHHHHHHcCCcCcccceEEEE
Confidence 9999953100 0233567788888774
|
| >1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A | Back alignment and structure |
|---|
Probab=90.25 E-value=0.36 Score=31.83 Aligned_cols=39 Identities=10% Similarity=0.130 Sum_probs=33.1
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCC
Q 031433 23 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 61 (159)
Q Consensus 23 ~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~ 61 (159)
.++++++|+|++-......+..|+..|+-++..+.|++.
T Consensus 56 ~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 94 (108)
T 1gmx_A 56 DFDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFE 94 (108)
T ss_dssp CTTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHH
T ss_pred CCCCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCCHH
Confidence 457899999999888999999999998546888999863
|
| >1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A | Back alignment and structure |
|---|
Probab=89.65 E-value=0.8 Score=33.55 Aligned_cols=78 Identities=13% Similarity=0.072 Sum_probs=46.3
Q ss_pred CCCCCcEEEEeCchHHHHHHHHHHhcC---CCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCC
Q 031433 22 RRPGLPMIVCCSSRDELDAVCSAVSNL---ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEH 98 (159)
Q Consensus 22 ~~~~~k~iIF~ns~~~~~~l~~~L~~~---~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (159)
...+.++||.|+++.-++.+.+.+++. ..+.+..++|+.+..+....+ .
T Consensus 79 ~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~----------------------- 130 (224)
T 1qde_A 79 SVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGL-----R----------------------- 130 (224)
T ss_dssp TCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------C-----T-----------------------
T ss_pred cCCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcC-----C-----------------------
Confidence 345679999999999998888877653 136888899887654432211 1
Q ss_pred ceeEEEEecCCC--CCCcCCCCCCCCCeEEE
Q 031433 99 KSHMIVVTDACL--PLLSSGESAISARVLIN 127 (159)
Q Consensus 99 ~~~vLV~Td~~~--~~~~rGid~~~v~~VI~ 127 (159)
..+|+|+|.-.+ .+.....++..+++||.
T Consensus 131 ~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iVi 161 (224)
T 1qde_A 131 DAQIVVGTPGRVFDNIQRRRFRTDKIKMFIL 161 (224)
T ss_dssp TCSEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred CCCEEEECHHHHHHHHHhCCcchhhCcEEEE
Confidence 367999996310 00133566777888774
|
| >3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A | Back alignment and structure |
|---|
Probab=89.64 E-value=1.4 Score=32.81 Aligned_cols=77 Identities=12% Similarity=0.102 Sum_probs=54.3
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcC----CCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCc
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSNL----ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHK 99 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~~----~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (159)
.+.++||.|++++-++.+.+.+++. + +.+..++|+.+..+....+ .. .
T Consensus 101 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~---~~------------------------~ 152 (242)
T 3fe2_A 101 DGPICLVLAPTRELAQQVQQVAAEYCRACR-LKSTCIYGGAPKGPQIRDL---ER------------------------G 152 (242)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHHHHTT-CCEEEECTTSCHHHHHHHH---HH------------------------C
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHHHHhhcC-ceEEEEECCCChHHHHHHh---cC------------------------C
Confidence 4678999999999999887777653 4 6899999999877655443 33 4
Q ss_pred eeEEEEecCCCC-CCc-CCCCCCCCCeEEEc
Q 031433 100 SHMIVVTDACLP-LLS-SGESAISARVLINY 128 (159)
Q Consensus 100 ~~vLV~Td~~~~-~~~-rGid~~~v~~VI~~ 128 (159)
.+|+|+|.-.+- ++. ..+++.+++++|.-
T Consensus 153 ~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViD 183 (242)
T 3fe2_A 153 VEICIATPGRLIDFLECGKTNLRRTTYLVLD 183 (242)
T ss_dssp CSEEEECHHHHHHHHHHTSCCCTTCCEEEET
T ss_pred CCEEEECHHHHHHHHHcCCCCcccccEEEEe
Confidence 789999952100 022 24577888887743
|
| >3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A | Back alignment and structure |
|---|
Probab=89.50 E-value=0.3 Score=32.42 Aligned_cols=38 Identities=5% Similarity=0.010 Sum_probs=32.6
Q ss_pred CCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCC
Q 031433 22 RRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDL 60 (159)
Q Consensus 22 ~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~ 60 (159)
-.++++++++|.+-......+..|++.|+ ++..+.|++
T Consensus 53 l~~~~~ivv~C~~G~rS~~aa~~L~~~G~-~~~~l~GG~ 90 (103)
T 3iwh_A 53 FNKNEIYYIVCAGGVRSAKVVEYLEANGI-DAVNVEGGM 90 (103)
T ss_dssp CCTTSEEEEECSSSSHHHHHHHHHHTTTC-EEEEETTHH
T ss_pred hcCCCeEEEECCCCHHHHHHHHHHHHcCC-CEEEecChH
Confidence 34578999999999999999999999984 888888876
|
| >3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A | Back alignment and structure |
|---|
Probab=88.81 E-value=0.65 Score=32.41 Aligned_cols=39 Identities=10% Similarity=0.072 Sum_probs=33.1
Q ss_pred CCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCC
Q 031433 22 RRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDL 60 (159)
Q Consensus 22 ~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~ 60 (159)
..+.++++|||++-..+...+..|+..|+-++..|.|++
T Consensus 53 l~~~~~ivvyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~ 91 (141)
T 3ilm_A 53 LEKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGL 91 (141)
T ss_dssp SCTTSEEEEECSSHHHHHHHHHHHHHTTCCSEEECTTHH
T ss_pred CCCCCeEEEEECCChHHHHHHHHHHHcCCCCEEEecCHH
Confidence 345688999999999999999999999854688888885
|
| >2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=88.45 E-value=0.77 Score=30.39 Aligned_cols=39 Identities=8% Similarity=0.158 Sum_probs=32.9
Q ss_pred CCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCC
Q 031433 22 RRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 61 (159)
Q Consensus 22 ~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~ 61 (159)
..+.++++|||++-..+...+..|+..|+-. ..+.|++.
T Consensus 53 ~~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~-~~l~GG~~ 91 (110)
T 2k0z_A 53 QHKDKKVLLHCRAGRRALDAAKSMHELGYTP-YYLEGNVY 91 (110)
T ss_dssp SCSSSCEEEECSSSHHHHHHHHHHHHTTCCC-EEEESCGG
T ss_pred cCCCCEEEEEeCCCchHHHHHHHHHHCCCCE-EEecCCHH
Confidence 3457899999999999999999999998545 88889864
|
| >2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene} | Back alignment and structure |
|---|
Probab=88.15 E-value=2.4 Score=29.15 Aligned_cols=47 Identities=26% Similarity=0.344 Sum_probs=42.0
Q ss_pred EEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcc
Q 031433 28 MIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHT 75 (159)
Q Consensus 28 ~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~ 75 (159)
.+||....+-...+...++..| +.+..++++.+...|..-+++|.+.
T Consensus 5 fvvfssdpeilkeivreikrqg-vrvvllysdqdekrrrerleefekq 51 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQG-VRVVLLYSDQDEKRRRERLEEFEKQ 51 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTT-CEEEEEECCSCHHHHHHHHHHHHTT
T ss_pred EEEecCCHHHHHHHHHHHHhCC-eEEEEEecCchHHHHHHHHHHHHHc
Confidence 4788888888889999999998 7999999999999999999999875
|
| >3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=87.85 E-value=2.9 Score=31.69 Aligned_cols=77 Identities=12% Similarity=0.159 Sum_probs=52.7
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcC---CCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCce
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSNL---ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKS 100 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~~---~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (159)
.+.++||.++++.-++.+++.+++. ..+.+..++|+........ .... ..
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~------------------------~~ 177 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQ---KLGN------------------------GI 177 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHH---HHHH------------------------CC
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHH---HhcC------------------------CC
Confidence 4678999999999999988888763 1257888999887665443 2333 47
Q ss_pred eEEEEecCCCC-CC--cCCCCCCCCCeEEE
Q 031433 101 HMIVVTDACLP-LL--SSGESAISARVLIN 127 (159)
Q Consensus 101 ~vLV~Td~~~~-~~--~rGid~~~v~~VI~ 127 (159)
+|+|+|.-.+- .+ ..++++..+++||-
T Consensus 178 ~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lVi 207 (262)
T 3ly5_A 178 NIIVATPGRLLDHMQNTPGFMYKNLQCLVI 207 (262)
T ss_dssp SEEEECHHHHHHHHHHCTTCCCTTCCEEEE
T ss_pred CEEEEcHHHHHHHHHccCCcccccCCEEEE
Confidence 89999941000 01 22467888888774
|
| >1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=87.76 E-value=0.59 Score=29.96 Aligned_cols=37 Identities=14% Similarity=0.130 Sum_probs=31.9
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCC
Q 031433 23 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 61 (159)
Q Consensus 23 ~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~ 61 (159)
.+ +++++||++-......+..|+..|+ .+..+.|++.
T Consensus 52 ~~-~~ivvyC~~g~rs~~a~~~L~~~G~-~v~~l~GG~~ 88 (94)
T 1wv9_A 52 PR-RPLLLVCEKGLLSQVAALYLEAEGY-EAMSLEGGLQ 88 (94)
T ss_dssp CS-SCEEEECSSSHHHHHHHHHHHHHTC-CEEEETTGGG
T ss_pred CC-CCEEEEcCCCChHHHHHHHHHHcCC-cEEEEcccHH
Confidence 44 8999999999999999999999985 6888888864
|
| >2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=87.50 E-value=0.56 Score=32.77 Aligned_cols=39 Identities=10% Similarity=0.146 Sum_probs=31.6
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCC
Q 031433 23 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 61 (159)
Q Consensus 23 ~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~ 61 (159)
.+.+++||||++-......+..|+..|+-++..+.|++.
T Consensus 78 ~~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 116 (148)
T 2fsx_A 78 QHERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFE 116 (148)
T ss_dssp ---CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTT
T ss_pred CCCCEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCChh
Confidence 456899999999888889999999998546899999874
|
| >2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=87.23 E-value=2.3 Score=31.35 Aligned_cols=76 Identities=13% Similarity=0.167 Sum_probs=50.1
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcCC---CccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCce
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSNLA---DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKS 100 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~~~---~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (159)
.+.++||.|+++.-++.+.+.+++.+ .+.+..++|+.+.......+ . ..
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~-----------------------~~ 147 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----N-----------------------NI 147 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----T-----------------------TC
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----C-----------------------CC
Confidence 46789999999999998888887642 26888999987655443322 2 47
Q ss_pred eEEEEecCCCC-CCcC--CCCCCCCCeEEE
Q 031433 101 HMIVVTDACLP-LLSS--GESAISARVLIN 127 (159)
Q Consensus 101 ~vLV~Td~~~~-~~~r--Gid~~~v~~VI~ 127 (159)
+|+|+|.-.+- .+.+ .++...+++||.
T Consensus 148 ~iiv~Tp~~l~~~l~~~~~~~~~~~~~lVi 177 (236)
T 2pl3_A 148 NILVCTPGRLLQHMDETVSFHATDLQMLVL 177 (236)
T ss_dssp SEEEECHHHHHHHHHHCSSCCCTTCCEEEE
T ss_pred CEEEECHHHHHHHHHhcCCcccccccEEEE
Confidence 89999963100 0112 366677887774
|
| >3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=87.19 E-value=0.58 Score=32.21 Aligned_cols=39 Identities=13% Similarity=0.096 Sum_probs=33.1
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCC
Q 031433 23 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 61 (159)
Q Consensus 23 ~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~ 61 (159)
.+.++++++|++-..+...+..|+..|+-++..+.|++.
T Consensus 89 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 127 (139)
T 3d1p_A 89 DSAKELIFYCASGKRGGEAQKVASSHGYSNTSLYPGSMN 127 (139)
T ss_dssp CTTSEEEEECSSSHHHHHHHHHHHTTTCCSEEECTTHHH
T ss_pred CCCCeEEEECCCCchHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 456899999999999999999999998546888888863
|
| >1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3 | Back alignment and structure |
|---|
Probab=86.88 E-value=0.46 Score=32.96 Aligned_cols=39 Identities=10% Similarity=0.218 Sum_probs=33.6
Q ss_pred CCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCC
Q 031433 22 RRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDL 60 (159)
Q Consensus 22 ~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~ 60 (159)
..+.++++|||++-......+..|+..|+-++..+.|++
T Consensus 79 l~~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~ 117 (137)
T 1qxn_A 79 LDPEKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGM 117 (137)
T ss_dssp CCTTSCEEEECCSSSCHHHHHHHHHHHTCSCEEEESSCH
T ss_pred CCCCCeEEEEcCCCcHHHHHHHHHHHcCCcceEEEcCcH
Confidence 456789999999999999999999999854688999986
|
| >1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A | Back alignment and structure |
|---|
Probab=86.85 E-value=3.1 Score=32.93 Aligned_cols=78 Identities=14% Similarity=0.129 Sum_probs=52.0
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcCC---CccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCce
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSNLA---DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKS 100 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~~~---~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (159)
.+.++||.|+++.-++.+.+.+++.. .+.+..++|+....+.... .. + ..
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~-~-----------------------~~ 140 (400)
T 1s2m_A 88 NKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILR---LN-E-----------------------TV 140 (400)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHH---TT-S-----------------------CC
T ss_pred CCccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHH---hc-C-----------------------CC
Confidence 45789999999999988888877641 3688899998876543221 22 2 57
Q ss_pred eEEEEecCCC-CCC-cCCCCCCCCCeEEEc
Q 031433 101 HMIVVTDACL-PLL-SSGESAISARVLINY 128 (159)
Q Consensus 101 ~vLV~Td~~~-~~~-~rGid~~~v~~VI~~ 128 (159)
+|+|+|.-.+ .++ ....++.++++||.=
T Consensus 141 ~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiD 170 (400)
T 1s2m_A 141 HILVGTPGRVLDLASRKVADLSDCSLFIMD 170 (400)
T ss_dssp SEEEECHHHHHHHHHTTCSCCTTCCEEEEE
T ss_pred CEEEEchHHHHHHHHhCCcccccCCEEEEe
Confidence 8999994200 002 233567788887743
|
| >3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A | Back alignment and structure |
|---|
Probab=86.81 E-value=0.6 Score=31.63 Aligned_cols=38 Identities=11% Similarity=-0.036 Sum_probs=32.0
Q ss_pred CCCCCcEEEEeCchHH--HHHHHHHHhcCCCccEEEeecCC
Q 031433 22 RRPGLPMIVCCSSRDE--LDAVCSAVSNLADISFSSLHSDL 60 (159)
Q Consensus 22 ~~~~~k~iIF~ns~~~--~~~l~~~L~~~~~i~~~~l~~~~ 60 (159)
..++++++|+|++-.. +...+..|+..|+ ++..|.|++
T Consensus 68 l~~~~~ivvyC~~g~r~~s~~a~~~L~~~G~-~v~~l~GG~ 107 (124)
T 3flh_A 68 LDPAKTYVVYDWTGGTTLGKTALLVLLSAGF-EAYELAGAL 107 (124)
T ss_dssp SCTTSEEEEECSSSSCSHHHHHHHHHHHHTC-EEEEETTHH
T ss_pred CCCCCeEEEEeCCCCchHHHHHHHHHHHcCC-eEEEeCCcH
Confidence 4457899999999877 7889999999995 888888876
|
| >2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=86.67 E-value=0.45 Score=32.70 Aligned_cols=38 Identities=3% Similarity=0.139 Sum_probs=32.8
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCC
Q 031433 23 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDL 60 (159)
Q Consensus 23 ~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~ 60 (159)
..+++++|||++-..+...+..|+..|+-++..|.|++
T Consensus 84 ~~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~ 121 (139)
T 2hhg_A 84 QEDKKFVFYCAGGLRSALAAKTAQDMGLKPVAHIEGGF 121 (139)
T ss_dssp GSSSEEEEECSSSHHHHHHHHHHHHHTCCSEEEETTHH
T ss_pred CCCCeEEEECCCChHHHHHHHHHHHcCCCCeEEecCCH
Confidence 35689999999998899999999999854699999986
|
| >1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A | Back alignment and structure |
|---|
Probab=85.81 E-value=0.76 Score=31.55 Aligned_cols=39 Identities=8% Similarity=-0.058 Sum_probs=33.0
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCC
Q 031433 23 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 61 (159)
Q Consensus 23 ~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~ 61 (159)
.++++++|||++-......+..|+..|+-++..+.|++.
T Consensus 72 ~~~~~ivv~C~sG~RS~~aa~~L~~~G~~~v~~l~GG~~ 110 (134)
T 1vee_A 72 PENTTLYILDKFDGNSELVAELVALNGFKSAYAIKDGAE 110 (134)
T ss_dssp GGGCEEEEECSSSTTHHHHHHHHHHHTCSEEEECTTTTT
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHcCCcceEEecCCcc
Confidence 346899999999988889999999998546888999984
|
| >2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A | Back alignment and structure |
|---|
Probab=85.72 E-value=3.1 Score=33.06 Aligned_cols=78 Identities=9% Similarity=0.094 Sum_probs=52.9
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhcCC---CccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCc
Q 031433 23 RPGLPMIVCCSSRDELDAVCSAVSNLA---DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHK 99 (159)
Q Consensus 23 ~~~~k~iIF~ns~~~~~~l~~~L~~~~---~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (159)
..+.++||.|+++.-++.+++.++..+ .+.+..++|+....+....+ .. .
T Consensus 103 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~------------------------~ 155 (410)
T 2j0s_A 103 VRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKL---DY------------------------G 155 (410)
T ss_dssp SCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHH---HH------------------------C
T ss_pred cCCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHh---hc------------------------C
Confidence 456899999999999998888777542 36888899998876654433 23 3
Q ss_pred eeEEEEecCCC-CCCcC-CCCCCCCCeEEE
Q 031433 100 SHMIVVTDACL-PLLSS-GESAISARVLIN 127 (159)
Q Consensus 100 ~~vLV~Td~~~-~~~~r-Gid~~~v~~VI~ 127 (159)
.+|+|+|.-.+ -++.+ .++...+++||.
T Consensus 156 ~~ivv~Tp~~l~~~l~~~~~~~~~~~~vVi 185 (410)
T 2j0s_A 156 QHVVAGTPGRVFDMIRRRSLRTRAIKMLVL 185 (410)
T ss_dssp CSEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred CCEEEcCHHHHHHHHHhCCccHhheeEEEE
Confidence 68899984200 00223 466677787774
|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=85.68 E-value=2.3 Score=33.96 Aligned_cols=45 Identities=11% Similarity=0.166 Sum_probs=36.2
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcCCCc---cEEEeecCCCHHHHHHH
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSNLADI---SFSSLHSDLAETERTLI 68 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~~~~i---~~~~l~~~~~~~~R~~~ 68 (159)
.+.++||.|+++.-++...+.+++..+. .+..+||+....++...
T Consensus 51 ~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~ 98 (494)
T 1wp9_A 51 YGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKA 98 (494)
T ss_dssp SCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHH
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhh
Confidence 4689999999999999888888876224 89999999988765443
|
| >3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens} | Back alignment and structure |
|---|
Probab=85.58 E-value=0.73 Score=36.09 Aligned_cols=77 Identities=4% Similarity=-0.017 Sum_probs=47.7
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhcC----CCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCC
Q 031433 23 RPGLPMIVCCSSRDELDAVCSAVSNL----ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEH 98 (159)
Q Consensus 23 ~~~~k~iIF~ns~~~~~~l~~~L~~~----~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (159)
....++||.++|++-+..+.+.++.. +.+.+..++|+.....+. . .
T Consensus 160 ~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~-----------------------~ 209 (300)
T 3fmo_B 160 NKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ-------K-----------------------I 209 (300)
T ss_dssp SCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC-------C-----------------------C
T ss_pred CCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh-------c-----------------------C
Confidence 34457999999999888877776653 235666676654422110 1 1
Q ss_pred ceeEEEEecCCC-CCC-c-CCCCCCCCCeEEEcc
Q 031433 99 KSHMIVVTDACL-PLL-S-SGESAISARVLINYE 129 (159)
Q Consensus 99 ~~~vLV~Td~~~-~~~-~-rGid~~~v~~VI~~d 129 (159)
..+|+|+|.-.+ -++ . ..+++..++++|.-+
T Consensus 210 ~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDE 243 (300)
T 3fmo_B 210 SEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDE 243 (300)
T ss_dssp CCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETT
T ss_pred CCCEEEECHHHHHHHHHhcCCCChhhceEEEEeC
Confidence 568999997410 001 1 357788999888533
|
| >3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=85.44 E-value=0.87 Score=33.94 Aligned_cols=89 Identities=16% Similarity=0.246 Sum_probs=52.2
Q ss_pred HHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCC---CccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCC
Q 031433 14 LLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLA---DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDE 90 (159)
Q Consensus 14 ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~---~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~ 90 (159)
++..+......+.++||.+++++-++.+++.+++.. .+.+..++|+..... .+...
T Consensus 87 ~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~--------------- 145 (245)
T 3dkp_A 87 ILMQLKQPANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAK------KFGPK--------------- 145 (245)
T ss_dssp HHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHT------TTSTT---------------
T ss_pred HHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHH------Hhhhh---------------
Confidence 344333323456789999999999998888887641 256777776532211 11110
Q ss_pred CCCCCCCCceeEEEEecCCCC-CCcC---CCCCCCCCeEEEc
Q 031433 91 SETGKDEHKSHMIVVTDACLP-LLSS---GESAISARVLINY 128 (159)
Q Consensus 91 ~~~~~~~~~~~vLV~Td~~~~-~~~r---Gid~~~v~~VI~~ 128 (159)
.....+|+|+|.-.+- ++.+ .+++.++++||.=
T Consensus 146 -----~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViD 182 (245)
T 3dkp_A 146 -----SSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVD 182 (245)
T ss_dssp -----SCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEES
T ss_pred -----hcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEe
Confidence 1126789999953100 0112 4788889988753
|
| >1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* | Back alignment and structure |
|---|
Probab=85.03 E-value=3.7 Score=32.20 Aligned_cols=48 Identities=15% Similarity=0.058 Sum_probs=36.5
Q ss_pred CCCCCcEEEEeCchHHHHHHHHHHhcC---CCccEEEeecCCCHHHHHHHH
Q 031433 22 RRPGLPMIVCCSSRDELDAVCSAVSNL---ADISFSSLHSDLAETERTLIL 69 (159)
Q Consensus 22 ~~~~~k~iIF~ns~~~~~~l~~~L~~~---~~i~~~~l~~~~~~~~R~~~l 69 (159)
...+.++||.|+++.-++.+.+.+.+. ..+.+..++|+....+....+
T Consensus 86 ~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 136 (394)
T 1fuu_A 86 SVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGL 136 (394)
T ss_dssp TCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHH
T ss_pred cCCCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhc
Confidence 345679999999999999888877653 126899999998877655443
|
| >3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A | Back alignment and structure |
|---|
Probab=84.35 E-value=0.89 Score=31.79 Aligned_cols=38 Identities=11% Similarity=0.147 Sum_probs=32.3
Q ss_pred CCCCcEEEEeCch--HHHHHHHHHHhcCCCccEEEeecCCC
Q 031433 23 RPGLPMIVCCSSR--DELDAVCSAVSNLADISFSSLHSDLA 61 (159)
Q Consensus 23 ~~~~k~iIF~ns~--~~~~~l~~~L~~~~~i~~~~l~~~~~ 61 (159)
.+++++||||++- ..+...+..|+..|+ ++..|.|++.
T Consensus 70 ~~~~~ivvyC~~g~~~rs~~aa~~L~~~G~-~v~~l~GG~~ 109 (144)
T 3nhv_A 70 SKEKVIITYCWGPACNGATKAAAKFAQLGF-RVKELIGGIE 109 (144)
T ss_dssp CTTSEEEEECSCTTCCHHHHHHHHHHHTTC-EEEEEESHHH
T ss_pred CCCCeEEEEECCCCccHHHHHHHHHHHCCC-eEEEeCCcHH
Confidence 4568999999997 578899999999995 8999999863
|
| >1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=84.22 E-value=0.91 Score=33.27 Aligned_cols=41 Identities=10% Similarity=0.168 Sum_probs=30.9
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhcCC-------CccEEEeecCCCHH
Q 031433 23 RPGLPMIVCCSSRDELDAVCSAVSNLA-------DISFSSLHSDLAET 63 (159)
Q Consensus 23 ~~~~k~iIF~ns~~~~~~l~~~L~~~~-------~i~~~~l~~~~~~~ 63 (159)
..+.++||.|+++.-++.+.+.+++.. .+.+..++|+.+..
T Consensus 70 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 117 (219)
T 1q0u_A 70 RAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQ 117 (219)
T ss_dssp SCSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHH
T ss_pred cCCceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHH
Confidence 346789999999999988888776531 36788888887543
|
| >1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=84.03 E-value=2.7 Score=31.34 Aligned_cols=76 Identities=11% Similarity=0.076 Sum_probs=51.0
Q ss_pred CCcEEEEeCchHHHHHHHHHHhcC---CCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCcee
Q 031433 25 GLPMIVCCSSRDELDAVCSAVSNL---ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSH 101 (159)
Q Consensus 25 ~~k~iIF~ns~~~~~~l~~~L~~~---~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (159)
+.++||.|++++-++.+.+.+++. ..+.+..++|+.+..+... .... ..+
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~------------------------~~~ 152 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIR---EVQM------------------------GCH 152 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHH---HHSS------------------------CCS
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHH---HhCC------------------------CCC
Confidence 468999999999999888877653 1267888999887655432 2233 478
Q ss_pred EEEEecCCCCC-C-cCCCCCCCCCeEEE
Q 031433 102 MIVVTDACLPL-L-SSGESAISARVLIN 127 (159)
Q Consensus 102 vLV~Td~~~~~-~-~rGid~~~v~~VI~ 127 (159)
|+|+|.-.+-. + ...+++..+++||.
T Consensus 153 Ivv~Tp~~l~~~l~~~~~~~~~~~~lVi 180 (253)
T 1wrb_A 153 LLVATPGRLVDFIEKNKISLEFCKYIVL 180 (253)
T ss_dssp EEEECHHHHHHHHHTTSBCCTTCCEEEE
T ss_pred EEEECHHHHHHHHHcCCCChhhCCEEEE
Confidence 99999741000 1 22356778888774
|
| >2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=83.99 E-value=3.6 Score=33.56 Aligned_cols=76 Identities=8% Similarity=0.110 Sum_probs=52.9
Q ss_pred CCcEEEEeCchHHHHHHHHHHhcCC---CccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCcee
Q 031433 25 GLPMIVCCSSRDELDAVCSAVSNLA---DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSH 101 (159)
Q Consensus 25 ~~k~iIF~ns~~~~~~l~~~L~~~~---~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (159)
+.++||.|+|++-+..+.+.+++.. .+.+..++|+.+..+.... ... ..+
T Consensus 129 ~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l~~------------------------~~~ 181 (434)
T 2db3_A 129 RPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNEC---ITR------------------------GCH 181 (434)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHH---HTT------------------------CCS
T ss_pred CccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHH---hhc------------------------CCC
Confidence 5799999999999999988877642 3678899999987664432 333 478
Q ss_pred EEEEecCCCC-CCcC-CCCCCCCCeEEE
Q 031433 102 MIVVTDACLP-LLSS-GESAISARVLIN 127 (159)
Q Consensus 102 vLV~Td~~~~-~~~r-Gid~~~v~~VI~ 127 (159)
|+|+|.-.+- ++.+ .+++..++++|.
T Consensus 182 Ivv~Tp~~l~~~l~~~~~~l~~~~~lVl 209 (434)
T 2db3_A 182 VVIATPGRLLDFVDRTFITFEDTRFVVL 209 (434)
T ss_dssp EEEECHHHHHHHHHTTSCCCTTCCEEEE
T ss_pred EEEEChHHHHHHHHhCCcccccCCeEEE
Confidence 9999953100 0222 356788888774
|
| >2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene} | Back alignment and structure |
|---|
Probab=83.43 E-value=7 Score=25.25 Aligned_cols=64 Identities=19% Similarity=0.369 Sum_probs=45.7
Q ss_pred cHHHHHHHHHHHHccCCCCCcEEEEeC--chHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcc
Q 031433 7 FQETLVELLHLVVAGRRPGLPMIVCCS--SRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHT 75 (159)
Q Consensus 7 ~~~~l~~ll~~l~~~~~~~~k~iIF~n--s~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~ 75 (159)
....+.++++.+ ...+++.+||+| +...+++..+.-++.| +...++.+. ++++-.+-.++|.+.
T Consensus 36 ssqdirdiiksm---kdngkplvvfvngasqndvnefqneakkeg-vsydvlkst-dpeeltqrvreflkt 101 (112)
T 2lnd_A 36 SSQDIRDIIKSM---KDNGKPLVVFVNGASQNDVNEFQNEAKKEG-VSYDVLKST-DPEELTQRVREFLKT 101 (112)
T ss_dssp SHHHHHHHHHHH---TTCCSCEEEEECSCCHHHHHHHHHHHHHHT-CEEEEEECC-CHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHH---HhcCCeEEEEecCcccccHHHHHHHHHhcC-cchhhhccC-CHHHHHHHHHHHHHh
Confidence 345667777755 456899999998 5566777777777777 677777654 566667777788764
|
| >2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=82.67 E-value=6.6 Score=31.09 Aligned_cols=75 Identities=9% Similarity=0.109 Sum_probs=51.5
Q ss_pred CcEEEEeCchHHHHHHHHHHhcC---CCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeE
Q 031433 26 LPMIVCCSSRDELDAVCSAVSNL---ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHM 102 (159)
Q Consensus 26 ~k~iIF~ns~~~~~~l~~~L~~~---~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 102 (159)
.++||.++++.-++.+++.+++. ..+.+..++|+.+..+... .+.. ..+|
T Consensus 102 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~------------------------~~~I 154 (417)
T 2i4i_A 102 PISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIR---DLER------------------------GCHL 154 (417)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHH---HHTT------------------------CCSE
T ss_pred ccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHH---HhhC------------------------CCCE
Confidence 67999999999999888887753 2368999999988765433 3333 4789
Q ss_pred EEEecCCCC-CCc-CCCCCCCCCeEEE
Q 031433 103 IVVTDACLP-LLS-SGESAISARVLIN 127 (159)
Q Consensus 103 LV~Td~~~~-~~~-rGid~~~v~~VI~ 127 (159)
+|+|.-.+- ++. ..+++..+++||.
T Consensus 155 ~v~Tp~~l~~~l~~~~~~~~~~~~iVi 181 (417)
T 2i4i_A 155 LVATPGRLVDMMERGKIGLDFCKYLVL 181 (417)
T ss_dssp EEECHHHHHHHHHTTSBCCTTCCEEEE
T ss_pred EEEChHHHHHHHHcCCcChhhCcEEEE
Confidence 999973100 012 2356777888774
|
| >4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* | Back alignment and structure |
|---|
Probab=81.02 E-value=4.1 Score=33.62 Aligned_cols=76 Identities=13% Similarity=0.068 Sum_probs=48.1
Q ss_pred CCcEEEEeCchHHHHHHHHHHhcC----CCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCce
Q 031433 25 GLPMIVCCSSRDELDAVCSAVSNL----ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKS 100 (159)
Q Consensus 25 ~~k~iIF~ns~~~~~~l~~~L~~~----~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (159)
+.++||.|+++.-+....+.+++. + +.+..+||+.+...+.. .+.. ..
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~---~~~~------------------------~~ 106 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQG-YSVQGISGENFSNVSVE---KVIE------------------------DS 106 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGT-CCEEECCCC-----CHH---HHHH------------------------HC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccC-ceEEEEeCCCCcchhHH---HhhC------------------------CC
Confidence 689999999999988888777764 5 79999999987665432 2223 46
Q ss_pred eEEEEecCCCCC-CcCC-C-CCCCCCeEEEc
Q 031433 101 HMIVVTDACLPL-LSSG-E-SAISARVLINY 128 (159)
Q Consensus 101 ~vLV~Td~~~~~-~~rG-i-d~~~v~~VI~~ 128 (159)
+|+|+|.-.+-- +.++ + .+..+++||.=
T Consensus 107 ~i~v~T~~~l~~~~~~~~~~~~~~~~~vViD 137 (556)
T 4a2p_A 107 DIIVVTPQILVNSFEDGTLTSLSIFTLMIFD 137 (556)
T ss_dssp SEEEECHHHHHHHHHSSSCCCSTTCSEEEEE
T ss_pred CEEEECHHHHHHHHHhCcccccccCCEEEEE
Confidence 789988641000 1122 3 56778877753
|
| >3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} | Back alignment and structure |
|---|
Probab=80.73 E-value=3.3 Score=34.10 Aligned_cols=40 Identities=5% Similarity=0.084 Sum_probs=32.7
Q ss_pred CCcEEEEeCchHHHHHHHHHHhcC----CCccEEEeecCCCHHHH
Q 031433 25 GLPMIVCCSSRDELDAVCSAVSNL----ADISFSSLHSDLAETER 65 (159)
Q Consensus 25 ~~k~iIF~ns~~~~~~l~~~L~~~----~~i~~~~l~~~~~~~~R 65 (159)
+.++||.|+++.-+....+.+++. + +.+..++|+.+...+
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~-~~~~~~~g~~~~~~~ 95 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLG-YNIASISGATSDSVS 95 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTT-CCEEEECTTTGGGSC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCC-cEEEEEcCCCcchhh
Confidence 689999999999888877777664 5 799999999865544
|
| >3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A | Back alignment and structure |
|---|
Probab=80.21 E-value=5.1 Score=30.49 Aligned_cols=50 Identities=12% Similarity=0.108 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhc-CCCccEEEeecCC
Q 031433 9 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSN-LADISFSSLHSDL 60 (159)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~-~~~i~~~~l~~~~ 60 (159)
+.+.+.+..+- ..+++++|+||.+-..+...+..|++ .|+-++..+.|++
T Consensus 212 ~~l~~~~~~~~--~~~~~~iv~yC~~G~rs~~a~~~L~~~~G~~~v~~l~GG~ 262 (277)
T 3aay_A 212 EELAKLYADAG--LDNSKETIAYCRIGERSSHTWFVLRELLGHQNVKNYDGSW 262 (277)
T ss_dssp HHHHHHHHHHT--CCTTSCEEEECSSHHHHHHHHHHHHTTSCCSCEEEESSHH
T ss_pred HHHHHHHHHcC--CCCCCCEEEEcCcHHHHHHHHHHHHHHcCCCcceeeCchH
Confidence 34555554321 34578999999999988889999986 7854688888875
|
| >3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=80.18 E-value=1.8 Score=34.43 Aligned_cols=79 Identities=14% Similarity=0.142 Sum_probs=52.3
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhcCC---CccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCc
Q 031433 23 RPGLPMIVCCSSRDELDAVCSAVSNLA---DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHK 99 (159)
Q Consensus 23 ~~~~k~iIF~ns~~~~~~l~~~L~~~~---~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (159)
..+.++||.|+++.-++.+.+.+++.+ ...+..++|+...... ++....+ .
T Consensus 106 ~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-----------------------~ 159 (414)
T 3eiq_A 106 LKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAE---VQKLQME-----------------------A 159 (414)
T ss_dssp SCSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHH---HHHHTTT-----------------------C
T ss_pred CCceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHH---HHHHhcC-----------------------C
Confidence 356899999999999988888887642 2577888887765543 3444444 6
Q ss_pred eeEEEEecCCC-CCC-cCCCCCCCCCeEEE
Q 031433 100 SHMIVVTDACL-PLL-SSGESAISARVLIN 127 (159)
Q Consensus 100 ~~vLV~Td~~~-~~~-~rGid~~~v~~VI~ 127 (159)
.+|+|+|.-.+ ..+ ...++...+++||.
T Consensus 160 ~~iiv~T~~~l~~~l~~~~~~~~~~~~vVi 189 (414)
T 3eiq_A 160 PHIIVGTPGRVFDMLNRRYLSPKYIKMFVL 189 (414)
T ss_dssp CSEEEECHHHHHHHHHHTSSCSTTCCEEEE
T ss_pred CCEEEECHHHHHHHHHcCCcccccCcEEEE
Confidence 88999995200 002 22356677777764
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 159 | ||||
| d1a1va2 | 299 | c.37.1.14 (A:326-624) HCV helicase domain {Human h | 0.002 |
| >d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Score = 34.9 bits (80), Expect = 0.002
Identities = 16/139 (11%), Positives = 38/139 (27%), Gaps = 15/139 (10%)
Query: 3 VSFTFQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAE 62
V+ + + + G ++ C S+ + D + + + L I+ + + L
Sbjct: 14 VALSTTGEIPFYGKAIPLEVIKGGRHLIFCHSKKKCDELAAKLVAL-GINAVAYYRGLDV 72
Query: 63 TERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISA 122
+ + V + D TG +I +
Sbjct: 73 SVIPT------------SGDVVVVATDALMTGFTGDFDSVIDCNTCVTQTVDFSLDPTF- 119
Query: 123 RVLINYELPTKKETYIRRM 141
+ LP + +R
Sbjct: 120 -TIETTTLPQDAVSRTQRR 137
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 159 | |||
| d1fuka_ | 162 | Initiation factor 4a {Baker's yeast (Saccharomyces | 100.0 | |
| d2j0sa2 | 168 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 99.97 | |
| d1s2ma2 | 171 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 99.97 | |
| d2rb4a1 | 168 | ATP-dependent RNA helicase DDX25 {Human (Homo sapi | 99.97 | |
| d1hv8a2 | 155 | Putative DEAD box RNA helicase {Archaeon Methanoco | 99.97 | |
| d1oywa3 | 200 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 99.97 | |
| d1t5ia_ | 168 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 99.97 | |
| d1t5la2 | 181 | Nucleotide excision repair enzyme UvrB {Bacillus c | 99.97 | |
| d1c4oa2 | 174 | Nucleotide excision repair enzyme UvrB {Thermus th | 99.96 | |
| d1wp9a2 | 286 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 99.94 | |
| d1jr6a_ | 138 | HCV helicase domain {Human hepatitis C virus (HCV) | 99.91 | |
| d1gkub2 | 248 | Helicase-like "domain" of reverse gyrase {Archaeon | 99.86 | |
| d1a1va2 | 299 | HCV helicase domain {Human hepatitis C virus (HCV) | 99.85 | |
| d2fwra1 | 200 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 99.85 | |
| d2p6ra4 | 201 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 99.84 | |
| d1gm5a4 | 206 | RecG helicase domain {Thermotoga maritima [TaxId: | 99.76 | |
| d1z5za1 | 244 | Helicase of the SNF2/Rad54 hamily {Sulfolobus solf | 99.7 | |
| d2eyqa5 | 211 | Transcription-repair coupling factor, TRCF {Escher | 99.68 | |
| d1z3ix1 | 346 | Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI | 99.66 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 99.59 | |
| d1yksa2 | 299 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 99.51 | |
| d1tf5a4 | 175 | Translocation ATPase SecA, nucleotide-binding doma | 99.36 | |
| d1nkta4 | 219 | Translocation ATPase SecA, nucleotide-binding doma | 98.45 | |
| d1gm5a3 | 264 | RecG helicase domain {Thermotoga maritima [TaxId: | 96.93 | |
| d2eyqa3 | 233 | Transcription-repair coupling factor, TRCF {Escher | 96.46 | |
| d1hv8a1 | 208 | Putative DEAD box RNA helicase {Archaeon Methanoco | 94.04 | |
| d1tq1a_ | 119 | Thiosulfate sulfurtransferase/Senescence-associate | 93.86 | |
| d2j0sa1 | 222 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 93.11 | |
| d1gmxa_ | 108 | Sulfurtransferase GlpE {Escherichia coli [TaxId: 5 | 91.54 | |
| d1urha2 | 120 | 3-mercaptopyruvate sulfurtransferase {Escherichia | 90.44 | |
| d1t6na_ | 207 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 89.93 | |
| d1gkub1 | 237 | Helicase-like "domain" of reverse gyrase {Archaeon | 89.09 | |
| d1yt8a1 | 136 | Thiosulfate sulfurtransferase PA2603 {Pseudomonas | 89.04 | |
| d1yt8a4 | 130 | Thiosulfate sulfurtransferase PA2603 {Pseudomonas | 88.92 | |
| d2eyqa2 | 117 | Transcription-repair coupling factor, TRCF {Escher | 88.88 | |
| d1qxna_ | 137 | Polysulfide-sulfur transferase (sulfide dehydrogen | 88.87 | |
| d1yt8a2 | 101 | Thiosulfate sulfurtransferase PA2603 {Pseudomonas | 87.3 | |
| d1e0ca2 | 136 | Sulfurtransferase {Azotobacter vinelandii [TaxId: | 84.78 | |
| d1yt8a3 | 157 | Thiosulfate sulfurtransferase PA2603 {Pseudomonas | 84.5 | |
| d1uara2 | 141 | Sulfurtransferase {Thermus thermophilus [TaxId: 27 | 83.77 | |
| d1qdea_ | 212 | Initiation factor 4a {Baker's yeast (Saccharomyces | 83.48 | |
| d2g9na1 | 218 | Initiation factor 4a {Human (Homo sapiens) [TaxId: | 83.36 | |
| d1veca_ | 206 | DEAD box RNA helicase rck/p54 {Human (Homo sapiens | 82.83 | |
| d1wp9a1 | 200 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 81.34 | |
| d1s2ma1 | 206 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 81.06 | |
| d1rhsa2 | 144 | Rhodanese {Cow (Bos taurus) [TaxId: 9913]} | 80.47 | |
| d1wrba1 | 238 | putative ATP-dependent RNA helicase VlgB {Flatworm | 80.02 |
| >d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=4.8e-33 Score=205.64 Aligned_cols=121 Identities=26% Similarity=0.405 Sum_probs=107.8
Q ss_pred cHHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhccccccccccccc
Q 031433 7 FQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQ 86 (159)
Q Consensus 7 ~~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~ 86 (159)
..+.+.++|..+++ ..+.+|+||||||+++++.+++.|...+ +.+..+||+|++++|..+++.|+.+
T Consensus 10 ~~e~K~~~L~~ll~-~~~~~k~iIF~~s~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~r~~~l~~f~~~----------- 76 (162)
T d1fuka_ 10 EEEYKYECLTDLYD-SISVTQAVIFCNTRRKVEELTTKLRNDK-FTVSAIYSDLPQQERDTIMKEFRSG----------- 76 (162)
T ss_dssp SGGGHHHHHHHHHH-HTTCSCEEEEESSHHHHHHHHHHHHHTT-CCEEEECTTSCHHHHHHHHHHHHTT-----------
T ss_pred CcHHHHHHHHHHHH-hCCCCcEEEEEEEEchHHHHHHHHhhcC-ceEEEeccCCchhhHHHHHHHHhhc-----------
Confidence 34556666666766 5667899999999999999999999998 6999999999999999999999998
Q ss_pred CCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccC--CCCeEEEEEE
Q 031433 87 SGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLA--AGTSFSDIIL 156 (159)
Q Consensus 87 ~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~--~~g~~i~~v~ 156 (159)
+.++|||||+ ++||+|+++|++|||||+|++++.|+||+||++| +.|.+++|++
T Consensus 77 ------------~~~iLv~Tdv----~~rGiDi~~v~~VI~~d~P~~~~~yihR~GR~gR~g~~g~~i~~~~ 132 (162)
T d1fuka_ 77 ------------SSRILISTDL----LARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVT 132 (162)
T ss_dssp ------------SCSEEEEEGG----GTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEE
T ss_pred ------------ccceeecccc----ccccccCCCceEEEEeccchhHHHHHhhccccccCCCccEEEEEcC
Confidence 8999999999 9999999999999999999999999999999955 5588888875
|
| >d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=6e-32 Score=200.83 Aligned_cols=117 Identities=22% Similarity=0.400 Sum_probs=104.2
Q ss_pred HHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCC
Q 031433 11 LVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDE 90 (159)
Q Consensus 11 l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~ 90 (159)
+.+.|..++. ..+..++|||||++++++.+++.|+..+ +.+..+||++++++|..+++.|++|
T Consensus 21 K~~~L~~ll~-~~~~~k~iiF~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~r~~~~~~fk~g--------------- 83 (168)
T d2j0sa2 21 KFDTLCDLYD-TLTITQAVIFCNTKRKVDWLTEKMREAN-FTVSSMHGDMPQKERESIMKEFRSG--------------- 83 (168)
T ss_dssp HHHHHHHHHH-HHTSSEEEEECSSHHHHHHHHHHHHHTT-CCCEEECTTSCHHHHHHHHHHHHHT---------------
T ss_pred HHHHHHHHHH-hCCCCceEEEeeeHHHHHHHHHHhhhcc-cchhhhhhhhhHHHHHHHHHHHhcC---------------
Confidence 3343444444 4456899999999999999999999998 6999999999999999999999999
Q ss_pred CCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccC--CCCeEEEEEE
Q 031433 91 SETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLA--AGTSFSDIIL 156 (159)
Q Consensus 91 ~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~--~~g~~i~~v~ 156 (159)
+.++|||||+ ++||+|+|++++|||||+|+++..|+||+||++| +.|.+++|++
T Consensus 84 --------~~~iLv~Td~----~~rGiDi~~v~~VIn~d~P~~~~~yihR~GR~gR~g~~G~~i~~~~ 139 (168)
T d2j0sa2 84 --------ASRVLISTDV----WARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVK 139 (168)
T ss_dssp --------SSCEEEECGG----GSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEE
T ss_pred --------CccEEeccch----hcccccccCcceEEEecCCcCHHHHHhhhccccccCCCcEEEEEEC
Confidence 8999999999 9999999999999999999999999999999955 5588888874
|
| >d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=1.2e-31 Score=199.37 Aligned_cols=121 Identities=21% Similarity=0.367 Sum_probs=107.0
Q ss_pred cHHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhccccccccccccc
Q 031433 7 FQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQ 86 (159)
Q Consensus 7 ~~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~ 86 (159)
+.+.+.+.|..+++ ..++.|+||||+++++++.+++.|+..+ +.+..+||+|++++|.+++++|+.+
T Consensus 15 ~~~~K~~~L~~ll~-~~~~~k~iVF~~~~~~~~~l~~~L~~~g-~~~~~~h~~~~~~~r~~~~~~f~~~----------- 81 (171)
T d1s2ma2 15 EERQKLHCLNTLFS-KLQINQAIIFCNSTNRVELLAKKITDLG-YSCYYSHARMKQQERNKVFHEFRQG----------- 81 (171)
T ss_dssp CGGGHHHHHHHHHH-HSCCSEEEEECSSHHHHHHHHHHHHHHT-CCEEEECTTSCHHHHHHHHHHHHTT-----------
T ss_pred CHHHHHHHHHHHHH-hCCCCceEEEEeeeehhhHhHHhhhccc-ccccccccccchhhhhhhhhhcccC-----------
Confidence 34444544554655 5567899999999999999999999998 6999999999999999999999999
Q ss_pred CCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccC--CCCeEEEEEE
Q 031433 87 SGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLA--AGTSFSDIIL 156 (159)
Q Consensus 87 ~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~--~~g~~i~~v~ 156 (159)
+.++|||||+ ++||+|+|++++|||||+|+++.+|+||+||++| +.|.+++|++
T Consensus 82 ------------~~~ilv~Td~----~~~Gid~~~v~~VI~~d~p~~~~~y~qr~GR~gR~g~~g~~i~~v~ 137 (171)
T d1s2ma2 82 ------------KVRTLVCSDL----LTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLIN 137 (171)
T ss_dssp ------------SSSEEEESSC----SSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEEC
T ss_pred ------------ccccccchhH----hhhccccceeEEEEecCCcchHHHHHHHhhhcccCCCccEEEEEeC
Confidence 8999999999 9999999999999999999999999999999966 4577877764
|
| >d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.97 E-value=1.3e-30 Score=190.78 Aligned_cols=119 Identities=21% Similarity=0.406 Sum_probs=104.6
Q ss_pred HHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccC
Q 031433 8 QETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQS 87 (159)
Q Consensus 8 ~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~ 87 (159)
.+.+.+.|..++. . .+.++||||+++++++.+++.|++.+ +.+..+||++++++|..++++|+.|
T Consensus 13 ~~~K~~~L~~ll~-~-~~~k~IIF~~s~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~r~~~~~~f~~~------------ 77 (155)
T d1hv8a2 13 ENERFEALCRLLK-N-KEFYGLVFCKTKRDTKELASMLRDIG-FKAGAIHGDLSQSQREKVIRLFKQK------------ 77 (155)
T ss_dssp GGGHHHHHHHHHC-S-TTCCEEEECSSHHHHHHHHHHHHHTT-CCEEEECSSSCHHHHHHHHHHHHTT------------
T ss_pred hHHHHHHHHHHHc-c-CCCCEEEEECchHHHHHHHhhhcccc-cccccccccchhhhhhhhhhhhhcc------------
Confidence 3344444444665 2 35689999999999999999999998 6999999999999999999999999
Q ss_pred CCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccC--CCCeEEEEEE
Q 031433 88 GDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLA--AGTSFSDIIL 156 (159)
Q Consensus 88 ~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~--~~g~~i~~v~ 156 (159)
+.++|||||+ ++||+|+|++++|||||+|+++..|+||+||++| +.|.+++|+.
T Consensus 78 -----------~~~ilv~T~~----~~~Gid~~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~g~~i~~~~ 133 (155)
T d1hv8a2 78 -----------KIRILIATDV----MSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIIN 133 (155)
T ss_dssp -----------SSSEEEECTT----HHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEEC
T ss_pred -----------cceeeeehhH----HhhhhhhccCcEEEEecCCCCHHHHHHHHHhcCcCCCCceEEEEEc
Confidence 8999999999 9999999999999999999999999999999966 5677877653
|
| >d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=2.8e-30 Score=196.75 Aligned_cols=116 Identities=21% Similarity=0.378 Sum_probs=102.2
Q ss_pred HHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCC
Q 031433 10 TLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGD 89 (159)
Q Consensus 10 ~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~ 89 (159)
++..|++ ++. ...+.++||||+|++.++.|+..|...+ +.+..+||++++++|.+++++|++|
T Consensus 17 k~~~L~~-~l~-~~~~~~~IIF~~t~~~~~~l~~~l~~~~-~~~~~~h~~~~~~~r~~~~~~f~~g-------------- 79 (200)
T d1oywa3 17 PLDQLMR-YVQ-EQRGKSGIIYCNSRAKVEDTAARLQSKG-ISAAAYHAGLENNVRADVQEKFQRD-------------- 79 (200)
T ss_dssp HHHHHHH-HHH-HTTTCCEEEECSSHHHHHHHHHHHHHTT-CCEEEECTTSCHHHHHHHHHHHHTT--------------
T ss_pred HHHHHHH-HHH-hcCCCCEEEEEeeehhhHHhhhhhccCC-ceeEEecCCCcHHHHHHHHHHHhcc--------------
Confidence 3344444 333 3456899999999999999999999998 7999999999999999999999999
Q ss_pred CCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCCC--CeEEEEE
Q 031433 90 ESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAG--TSFSDII 155 (159)
Q Consensus 90 ~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~~--g~~i~~v 155 (159)
+.+||||||+ ++||||+|+|++|||||+|+++.+|+||+||+||.+ |.++.|+
T Consensus 80 ---------~~~ilvaTd~----~~~GiD~p~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~ai~~~ 134 (200)
T d1oywa3 80 ---------DLQIVVATVA----FGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFY 134 (200)
T ss_dssp ---------SCSEEEECTT----SCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEE
T ss_pred ---------cceEEEecch----hhhccCCCCCCEEEECCCccchHHHHHHhhhhhcCCCCceEEEec
Confidence 8999999999 999999999999999999999999999999997765 5555554
|
| >d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=2.9e-30 Score=191.52 Aligned_cols=117 Identities=14% Similarity=0.217 Sum_probs=103.8
Q ss_pred HHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCC
Q 031433 11 LVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDE 90 (159)
Q Consensus 11 l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~ 90 (159)
+.+.|..++. .....|+|||||++++++.|++.|.+.+ +.+..+||+|++++|.+++++|+.|
T Consensus 14 K~~~L~~ll~-~~~~~k~iIF~~~~~~~~~l~~~L~~~~-~~~~~ihg~~~~~~r~~~l~~F~~g--------------- 76 (168)
T d1t5ia_ 14 KNRKLFDLLD-VLEFNQVVIFVKSVQRCIALAQLLVEQN-FPAIAIHRGMPQEERLSRYQQFKDF--------------- 76 (168)
T ss_dssp HHHHHHHHHH-HSCCSSEEEECSSHHHHHHHHHHHHHTT-CCEEEECTTSCHHHHHHHHHHHHTT---------------
T ss_pred HHHHHHHHHH-hCCCCeEEEEEeeeecchhhhhhhcccc-ccccccccccchhhhhhhhhhhccc---------------
Confidence 3333333554 3456899999999999999999999998 6999999999999999999999998
Q ss_pred CCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccC--CCCeEEEEEE
Q 031433 91 SETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLA--AGTSFSDIIL 156 (159)
Q Consensus 91 ~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~--~~g~~i~~v~ 156 (159)
+.++||||++ +++|+|+|.+++|||||+|+++..|+||+||++| +.|.+++|++
T Consensus 77 --------~~~iLv~T~~----~~~Gid~~~~~~vi~~~~p~~~~~yiqr~GR~gR~g~~g~~i~l~~ 132 (168)
T d1t5ia_ 77 --------QRRILVATNL----FGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVS 132 (168)
T ss_dssp --------SCSEEEESSC----CSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEEC
T ss_pred --------cceeeecccc----ccchhhcccchhhhhhhcccchhhHhhhhhhcccCCCccEEEEEEC
Confidence 8999999999 9999999999999999999999999999999955 6688888764
|
| >d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Probab=99.97 E-value=4.6e-30 Score=192.93 Aligned_cols=110 Identities=14% Similarity=0.196 Sum_probs=98.2
Q ss_pred HHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCC
Q 031433 12 VELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDES 91 (159)
Q Consensus 12 ~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~ 91 (159)
.+++..+......+.++||||++++.++.++..|.+.| +.+..+||+|++++|.+++++|++|
T Consensus 18 d~ll~~i~~~~~~~~~~iif~~~~~~~~~~~~~l~~~g-~~~~~~hg~~~~~eR~~~l~~Fr~g---------------- 80 (181)
T d1t5la2 18 DDLIGEIRERVERNERTLVTTLTKKMAEDLTDYLKEAG-IKVAYLHSEIKTLERIEIIRDLRLG---------------- 80 (181)
T ss_dssp HHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHTTT-CCEEEECSSCCHHHHHHHHHHHHHT----------------
T ss_pred HHHHHHHHHHHhcCCeEEEEeehhhhhHHHHHHHHhCC-cceeEecCCccHHHHHHHHHHHHCC----------------
Confidence 34555444322346899999999999999999999998 7999999999999999999999999
Q ss_pred CCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCC-----ChhHHHhhhhcccCCCC
Q 031433 92 ETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPT-----KKETYIRRMTTCLAAGT 149 (159)
Q Consensus 92 ~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~-----~~~~yi~R~GR~~~~~g 149 (159)
+.+||||||+ ++||+|+|+|++|||||+|. +...|+||+||+||.+.
T Consensus 81 -------~~~vLVaTdv----~~rGiDip~v~~VI~~d~p~~~~~~s~~~yi~R~GRagR~g~ 132 (181)
T d1t5la2 81 -------KYDVLVGINL----LREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNAN 132 (181)
T ss_dssp -------SCSEEEESCC----CSSSCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTSTT
T ss_pred -------CCCEEEehhH----HHccCCCCCCCEEEEecCCcccccccHHHHHHHHHhhccccC
Confidence 8999999999 99999999999999999995 68999999999988763
|
| >d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Thermus thermophilus [TaxId: 274]
Probab=99.96 E-value=5.6e-29 Score=185.74 Aligned_cols=111 Identities=13% Similarity=0.184 Sum_probs=98.4
Q ss_pred HHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCC
Q 031433 10 TLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGD 89 (159)
Q Consensus 10 ~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~ 89 (159)
.+.+|++.+.+....++++||||+|++.++.|++.|.+.| +.+..+||+|++.+|.+++++|++|
T Consensus 16 qv~dll~~i~~~~~~g~r~lvfc~t~~~~~~l~~~L~~~G-i~a~~~Hg~~~~~eR~~~l~~F~~G-------------- 80 (174)
T d1c4oa2 16 QILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHG-IRARYLHHELDAFKRQALIRDLRLG-------------- 80 (174)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTT-CCEEEECTTCCHHHHHHHHHHHHTT--------------
T ss_pred CHHHHHHHHHHHHhcCCcEEEEEcchhHHHHHHHHHHhcC-CceEEEecccchHHHHHHHHHHHCC--------------
Confidence 3444555554433457899999999999999999999998 7999999999999999999999999
Q ss_pred CCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCC-----ChhHHHhhhhcccCCC
Q 031433 90 ESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPT-----KKETYIRRMTTCLAAG 148 (159)
Q Consensus 90 ~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~-----~~~~yi~R~GR~~~~~ 148 (159)
+++|||+|++ ++||+|+|+|++|||||+|. +.+.|+||+||++|.+
T Consensus 81 ---------~~~vLVaT~v----~~~GiDip~V~~Vi~~~~~~~~~~~~~~~~iq~~GR~gR~~ 131 (174)
T d1c4oa2 81 ---------HYDCLVGINL----LREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNA 131 (174)
T ss_dssp ---------SCSEEEESCC----CCTTCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTST
T ss_pred ---------CeEEEEeeee----eeeeccCCCCcEEEEeccccccccchhHHHHHHhhhhhhcC
Confidence 8999999999 99999999999999999765 5588999999998865
|
| >d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.94 E-value=9.3e-27 Score=184.25 Aligned_cols=122 Identities=17% Similarity=0.209 Sum_probs=104.4
Q ss_pred CcHHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeec--------CCCHHHHHHHHHHHhcccc
Q 031433 6 TFQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHS--------DLAETERTLILEEFRHTAM 77 (159)
Q Consensus 6 ~~~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~--------~~~~~~R~~~l~~F~~~~~ 77 (159)
++.+.+.++|..++. ..++.++||||+++++++.+++.|.+.+ +.+..+|| +++.++|..++++|++|
T Consensus 143 pK~~~l~~~l~~~~~-~~~~~k~iiF~~~~~~~~~~~~~L~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~F~~g-- 218 (286)
T d1wp9a2 143 PKMDKLKEIIREQLQ-RKQNSKIIVFTNYRETAKKIVNELVKDG-IKAKRFVGQASKENDRGLSQREQKLILDEFARG-- 218 (286)
T ss_dssp HHHHHHHHHHHHHHH-HCTTCCEEEECSCHHHHHHHHHHHHHTT-CCEEEECCSSCC-------CCHHHHHHHHHHHT--
T ss_pred cHHHHHHHHHHHHHH-hCCCCcEEEEeCcHHhHHHHHHHHHHcC-CceEEeeccccccccchhchHHHHHHHHHHHcC--
Confidence 455677778877766 5667899999999999999999999987 68888876 56777899999999998
Q ss_pred cccccccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCCC-CeEEEEEE
Q 031433 78 KWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAG-TSFSDIIL 156 (159)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~~-g~~i~~v~ 156 (159)
+++|||||++ +++|+|+|+|++|||||+|+++..|+||+||+||.+ |.++.|++
T Consensus 219 ---------------------~~~vLv~T~~----~~~Gld~~~~~~Vi~~d~~~~~~~~~Qr~GR~gR~~~~~~~~l~~ 273 (286)
T d1wp9a2 219 ---------------------EFNVLVATSV----GEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMPGRVIILMA 273 (286)
T ss_dssp ---------------------SCSEEEECGG----GGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCCSEEEEEEE
T ss_pred ---------------------CCcEEEEccc----eeccccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCCCCEEEEEEe
Confidence 8999999999 999999999999999999999999999999997653 66666554
|
| >d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=99.91 E-value=1.9e-25 Score=160.83 Aligned_cols=91 Identities=19% Similarity=0.230 Sum_probs=81.5
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEE
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMI 103 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL 103 (159)
.++++||||||++.|+.|++.|+..| +.+..+|++|+++ +|+++ +.++|
T Consensus 34 ~~~k~IVFc~t~~~ae~la~~L~~~G-~~~~~~H~~~~~~-------~~~~~-----------------------~~~vl 82 (138)
T d1jr6a_ 34 KGGRHLIFCHSKKKCDELAAKLVALG-INAVAYYRGLDVS-------VIPTN-----------------------GDVVV 82 (138)
T ss_dssp TTSCEEEECSCHHHHHHHHHHHHHHT-CEEEEECTTCCSC-------CCTTS-----------------------SCEEE
T ss_pred CCCCEEEEeCcHHHHHHHHHHHhccc-cchhhhhccchhh-------hhhhh-----------------------hccee
Confidence 45799999999999999999999998 7999999999854 46777 89999
Q ss_pred EEecCCCCCCcCCCCCCCCCeEEEcc----CCCChhHHHhhhhcccCCCCeE
Q 031433 104 VVTDACLPLLSSGESAISARVLINYE----LPTKKETYIRRMTTCLAAGTSF 151 (159)
Q Consensus 104 V~Td~~~~~~~rGid~~~v~~VI~~d----~P~~~~~yi~R~GR~~~~~g~~ 151 (159)
||||+ ++||+| +++++||||| +|.++++|+||+||+|| +..+
T Consensus 83 vaTd~----~~~GiD-~~v~~Vi~~~~~~~~P~~~~~y~qr~GR~gR-g~~G 128 (138)
T d1jr6a_ 83 VATDA----LMTGFT-GDFDSVIDCNTSDGKPQDAVSRTQRRGRTGR-GKPG 128 (138)
T ss_dssp EESSS----SCSSSC-CCBSEEEECSEETTEECCHHHHHHHHTTBCS-SSCE
T ss_pred ehhHH----HHhccc-cccceEEEEEecCCCCCCHHHHHhHhccccC-CCCc
Confidence 99999 999999 9999999865 69999999999999988 4333
|
| >d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.86 E-value=2.8e-23 Score=161.51 Aligned_cols=87 Identities=13% Similarity=0.176 Sum_probs=76.5
Q ss_pred CCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEEE
Q 031433 25 GLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIV 104 (159)
Q Consensus 25 ~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLV 104 (159)
+.++||||+|++++++|+++|++. +||++++++|.+++++|++| +++|||
T Consensus 25 ~~~~iif~~~~~~~~~l~~~l~~~-------~hg~~~~~~R~~~~~~f~~g-----------------------~~~vLV 74 (248)
T d1gkub2 25 GTGGIIYARTGEEAEEIYESLKNK-------FRIGIVTATKKGDYEKFVEG-----------------------EIDHLI 74 (248)
T ss_dssp CSCEEEEESSHHHHHHHHHTTTTS-------SCEEECTTSSSHHHHHHHHT-----------------------SCSEEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHHh-------ccCCCCHHHHHHHHHHHHhC-----------------------CCeEEE
Confidence 468999999999999999999753 79999999999999999999 899999
Q ss_pred Ee----cCCCCCCcCCCCCCC-CCeEEEccCCCChhHHHhhhhcccCCCC
Q 031433 105 VT----DACLPLLSSGESAIS-ARVLINYELPTKKETYIRRMTTCLAAGT 149 (159)
Q Consensus 105 ~T----d~~~~~~~rGid~~~-v~~VI~~d~P~~~~~yi~R~GR~~~~~g 149 (159)
|| |+ ++||||+|+ |++|||||+|+ |.||+||++|.+.
T Consensus 75 aT~a~~~v----~~rGlDip~~v~~VI~~d~P~----~~~r~gR~~R~g~ 116 (248)
T d1gkub2 75 GTAHYYGT----LVRGLDLPERIRFAVFVGCPS----FRVTIEDIDSLSP 116 (248)
T ss_dssp EECC----------CCSCCTTTCCEEEEESCCE----EEEECSCGGGSCH
T ss_pred Eeccccch----hhhccCccccccEEEEeCCCc----chhhhhhhhccCc
Confidence 99 88 999999996 99999999995 8999999977653
|
| >d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=99.85 E-value=1.1e-22 Score=161.76 Aligned_cols=101 Identities=13% Similarity=0.068 Sum_probs=86.4
Q ss_pred CCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHH----------HHHHHHHhcccccccccccccCCCCCCCC
Q 031433 25 GLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETER----------TLILEEFRHTAMKWNQKVTEQSGDESETG 94 (159)
Q Consensus 25 ~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R----------~~~l~~F~~~~~~~~~~~~~~~~~~~~~~ 94 (159)
+.|+||||||++.++.|++.|++.| +++..+|++++++.| ..+++.|+.|
T Consensus 36 ggk~LVFcnSR~~aE~La~~L~~~G-i~a~~~Hgglsq~~R~~~gd~~i~~~~aLe~f~~G------------------- 95 (299)
T d1a1va2 36 GGRHLIFCHSKKKCDELAAKLVALG-INAVAYYRGLDVSVIPTSGDVVVVATDALMTGFTG------------------- 95 (299)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHTT-CCEEEECTTSCGGGSCSSSSEEEEECTTC---CCC-------------------
T ss_pred CCCEEEECCcHHHHHHHHHHHHHCC-CCEEEEeCCchHHHHHhccchHHHHHHHHHHHhcC-------------------
Confidence 5799999999999999999999998 799999999999887 4577788887
Q ss_pred CCCCceeEEEEecCCCCCCcC---CCCCCCCCeEEEccCCCChhHHHhhhhcccCCCCeEEE
Q 031433 95 KDEHKSHMIVVTDACLPLLSS---GESAISARVLINYELPTKKETYIRRMTTCLAAGTSFSD 153 (159)
Q Consensus 95 ~~~~~~~vLV~Td~~~~~~~r---Gid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~~g~~i~ 153 (159)
+.+++|+|++ +++ |+|++.+.+|||||+|.++++|+||+||+||..+-...
T Consensus 96 ----~~dvVVaT~~----~a~g~~giDid~V~~VI~~d~P~SvesyIQRiGRTGRGr~G~~~ 149 (299)
T d1a1va2 96 ----DFDSVIDCNT----CVTQTVDFSLDPTFTIETTTLPQDAVSRTQRRGRTGRGKPGIYR 149 (299)
T ss_dssp ----CBSEEEECCE----EEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCSSSCEEEE
T ss_pred ----CCcEEEEEee----hhccCCCCCCCcceEEEeCCCCCCHHHHHhhccccCCCCCceEE
Confidence 8999999999 999 67777888999999999999999999999884333333
|
| >d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.85 E-value=4.7e-22 Score=149.69 Aligned_cols=100 Identities=20% Similarity=0.267 Sum_probs=88.2
Q ss_pred HHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCC
Q 031433 15 LHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETG 94 (159)
Q Consensus 15 l~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~ 94 (159)
|..++. ..++.++||||++.+.++.|++.|. +..+||+++.++|..++++|+++
T Consensus 84 l~~ll~-~~~~~k~lvf~~~~~~~~~l~~~l~------~~~i~g~~~~~~R~~~l~~F~~~------------------- 137 (200)
T d2fwra1 84 LREILE-RHRKDKIIIFTRHNELVYRISKVFL------IPAITHRTSREEREEILEGFRTG------------------- 137 (200)
T ss_dssp HHHHHH-HTSSSCBCCBCSCHHHHHHHHHHTT------CCBCCSSSCSHHHHTHHHHHHHS-------------------
T ss_pred HHHHHH-hCCCCcEEEEeCcHHHHHHHHhhcC------cceeeCCCCHHHHHHHHHHhhcC-------------------
Confidence 333444 4557899999999999999988873 33479999999999999999998
Q ss_pred CCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCCC
Q 031433 95 KDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAG 148 (159)
Q Consensus 95 ~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~~ 148 (159)
+.+|||+|++ +++|+|+|.+++||+||+|+++..|+||+||++|.+
T Consensus 138 ----~~~vLv~~~~----~~~Gidl~~~~~vi~~~~~~s~~~~~Q~iGR~~R~~ 183 (200)
T d2fwra1 138 ----RFRAIVSSQV----LDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPS 183 (200)
T ss_dssp ----SCSBCBCSSC----CCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCC
T ss_pred ----Ceeeeeecch----hhcccCCCCCCEEEEeCCCCCHHHHHHHHHhcCCCC
Confidence 8999999999 999999999999999999999999999999996653
|
| >d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.84 E-value=6.3e-21 Score=144.48 Aligned_cols=109 Identities=21% Similarity=0.300 Sum_probs=92.5
Q ss_pred HHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCC----C-------------------------ccEEEeecCC
Q 031433 10 TLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLA----D-------------------------ISFSSLHSDL 60 (159)
Q Consensus 10 ~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~----~-------------------------i~~~~l~~~~ 60 (159)
+..+++..+.. .+.++||||+|++.|+.++..|.+.. . .-+..+|++|
T Consensus 28 ~~~~l~~~~i~---~~~~~LVF~~sRk~~~~~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~GIa~hh~~l 104 (201)
T d2p6ra4 28 KFEELVEECVA---ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGL 104 (201)
T ss_dssp CHHHHHHHHHH---TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTS
T ss_pred hHHHHHHHHHH---cCCcEEEEeCCHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhhhhhhhHHHHHHHhccHHHHHHHh
Confidence 34456665554 35799999999999998888877530 0 0167899999
Q ss_pred CHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEE-------ccCCCC
Q 031433 61 AETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLIN-------YELPTK 133 (159)
Q Consensus 61 ~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~-------~d~P~~ 133 (159)
++++|..+.+.|++| .++|||||+. +++|+|+|..++||+ ++.|.+
T Consensus 105 ~~~~r~~ie~~f~~g-----------------------~i~vlvaT~~----l~~Gin~p~~~vvi~~~~~~d~~~~~~~ 157 (201)
T d2p6ra4 105 LNGQRRVVEDAFRRG-----------------------NIKVVVATPT----LAAGVNLPARRVIVRSLYRFDGYSKRIK 157 (201)
T ss_dssp CHHHHHHHHHHHHTT-----------------------SCCEEEECST----TTSSSCCCBSEEEECCSEEESSSEEECC
T ss_pred hhhhHHHHHHHHhCC-----------------------CceEEEechH----HHhhcCCCCceEEEecceeccCCcCCCC
Confidence 999999999999999 8999999999 999999999999996 788999
Q ss_pred hhHHHhhhhcccCCC
Q 031433 134 KETYIRRMTTCLAAG 148 (159)
Q Consensus 134 ~~~yi~R~GR~~~~~ 148 (159)
+.+|+||+|||||.+
T Consensus 158 ~~~~~q~~GRAGR~g 172 (201)
T d2p6ra4 158 VSEYKQMAGRAGRPG 172 (201)
T ss_dssp HHHHHHHHTTBSCTT
T ss_pred HHHHHHHhcccCCCC
Confidence 999999999998864
|
| >d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.76 E-value=4.1e-20 Score=140.72 Aligned_cols=116 Identities=15% Similarity=0.160 Sum_probs=86.3
Q ss_pred HHHHHHHHccCCCCCcEEEEeCchHHHH--------HHHHHHhcC--CCccEEEeecCCCHHHHHHHHHHHhcccccccc
Q 031433 12 VELLHLVVAGRRPGLPMIVCCSSRDELD--------AVCSAVSNL--ADISFSSLHSDLAETERTLILEEFRHTAMKWNQ 81 (159)
Q Consensus 12 ~~ll~~l~~~~~~~~k~iIF~ns~~~~~--------~l~~~L~~~--~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~ 81 (159)
.++++.+..+-..+.++.+.|+..+..+ ...+.|.+. +..++..+||.|++++|.+++++|++|
T Consensus 16 ~~v~~~I~~el~~g~QvyvVcP~Ieese~~~~~~~~e~~~~l~~~~~p~~~v~~lHG~m~~~eke~~m~~F~~g------ 89 (206)
T d1gm5a4 16 NEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEG------ 89 (206)
T ss_dssp HHHHHHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTT------
T ss_pred HHHHHHHHHHHHcCCCEEEEEeeecccccccchhhHHHHHHHHHhcCCCCeEEEEeecccHHHHHHHHHHHHCC------
Confidence 3344444443456789889998765443 344455433 235888999999999999999999999
Q ss_pred cccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCC-ChhHHHhhhhcccCCCCeEEEE
Q 031433 82 KVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPT-KKETYIRRMTTCLAAGTSFSDI 154 (159)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~-~~~~yi~R~GR~~~~~g~~i~~ 154 (159)
+++|||||++ +++|||+|++++||+++.|. ..+.|.|..||+||.+..+.++
T Consensus 90 -----------------~~~iLVaTtV----iE~GIDip~a~~iii~~a~~fglsqlhQlrGRvGR~~~~~~~~ 142 (206)
T d1gm5a4 90 -----------------RYDILVSTTV----IEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCF 142 (206)
T ss_dssp -----------------SSSBCCCSSC----CCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEE
T ss_pred -----------------CEEEEEEehh----hhccccccCCcEEEEEccCCccHHHHHhhhhheeeccccceeE
Confidence 8999999999 99999999999999999998 4566666689997776555544
|
| >d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Helicase of the SNF2/Rad54 hamily species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.70 E-value=7.3e-17 Score=124.38 Aligned_cols=111 Identities=14% Similarity=0.136 Sum_probs=85.7
Q ss_pred cHHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhccccccccccccc
Q 031433 7 FQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQ 86 (159)
Q Consensus 7 ~~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~ 86 (159)
+.+.+.+++..+.. .++|+||||+.....+.+...|....++.+..+||+++.++|.+++++|++++
T Consensus 70 K~~~l~~~l~~~~~---~g~kviIFs~~~~~~~~l~~~l~~~~~~~~~~i~G~~~~~~R~~~i~~F~~~~---------- 136 (244)
T d1z5za1 70 KMIRTMEIIEEALD---EGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNP---------- 136 (244)
T ss_dssp HHHHHHHHHHHHHH---TTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCT----------
T ss_pred HHHHHHHHHHhhcc---cccceEEEeeceehHHHHHHHHHhhccceEEEEecccchhccchhhhhhhccc----------
Confidence 45566666665443 57899999999999999999997652268889999999999999999999872
Q ss_pred CCCCCCCCCCCCceeEEEE-ecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccC
Q 031433 87 SGDESETGKDEHKSHMIVV-TDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLA 146 (159)
Q Consensus 87 ~~~~~~~~~~~~~~~vLV~-Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~ 146 (159)
...++++ |.+ .+.|+|++.+++||+||+||++..+.|++||+-|
T Consensus 137 ------------~~~vll~~~~~----~g~Glnl~~a~~vi~~~~~wn~~~~~Qa~~R~~R 181 (244)
T d1z5za1 137 ------------SVKFIVLSVKA----GGFGINLTSANRVIHFDRWWNPAVEDQATDRVYR 181 (244)
T ss_dssp ------------TCCEEEEECCT----TCCCCCCTTCSEEEECSCCSCTTTC---------
T ss_pred ------------cchhccccccc----cccccccchhhhhhhcCchhhhHHHhhhcceeee
Confidence 5666655 577 9999999999999999999999999999999933
|
| >d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=99.68 E-value=1.6e-16 Score=120.63 Aligned_cols=116 Identities=11% Similarity=0.145 Sum_probs=101.3
Q ss_pred HHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcC-CCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCC
Q 031433 14 LLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL-ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESE 92 (159)
Q Consensus 14 ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~-~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~ 92 (159)
+.+.+..+-..+.|+.+.||..+..+.+.+.|.+. +..++..+||.|+++++.+++++|+++
T Consensus 20 i~~~I~~El~rGgQvy~V~p~I~~~e~~~~~l~~~~p~~~i~~lHGkm~~~eke~im~~F~~g----------------- 82 (211)
T d2eyqa5 20 VREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQ----------------- 82 (211)
T ss_dssp HHHHHHHHHTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTT-----------------
T ss_pred HHHHHHHHHHcCCeEEEEEcCccchhhHHHHHHHhCCceEEEEEEeccCHHHHHHHHHHHHcC-----------------
Confidence 34444444556899999999999999999998875 447999999999999999999999999
Q ss_pred CCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCC-ChhHHHhhhhcccCCCCeEEEEEE
Q 031433 93 TGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPT-KKETYIRRMTTCLAAGTSFSDIIL 156 (159)
Q Consensus 93 ~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~-~~~~yi~R~GR~~~~~g~~i~~v~ 156 (159)
+.+|||||.+ .+.|+|+|+++++|.++.+. ....+-|-.||+||.+..+++++.
T Consensus 83 ------~~~ILv~Ttv----IEvGiDvpnA~~iiI~~a~rfGLaQLhQLRGRVGR~~~~s~c~l~ 137 (211)
T d2eyqa5 83 ------RFNVLVCTTI----IETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLL 137 (211)
T ss_dssp ------SCCEEEESST----TGGGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEE
T ss_pred ------CcceEEEehh----hhhccCCCCCcEEEEecchhccccccccccceeeecCccceEEEE
Confidence 8999999999 99999999999999999885 788888888999998887777765
|
| >d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Rad54-like, Rad54L species: Zebra fish (Danio rerio) [TaxId: 7955]
Probab=99.66 E-value=5.5e-16 Score=125.75 Aligned_cols=112 Identities=14% Similarity=0.161 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccC
Q 031433 8 QETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQS 87 (159)
Q Consensus 8 ~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~ 87 (159)
...+.++|..+. ..++.|+|||++...+.+.|.+.|...| +.+..++|+++..+|.+++++|+.+.
T Consensus 103 l~~L~~ll~~~~--~~~g~KvlIFs~~~~~ld~l~~~l~~~g-~~~~~l~G~~~~~~R~~~i~~F~~~~----------- 168 (346)
T d1z3ix1 103 MLVLDYILAMTR--TTTSDKVVLVSNYTQTLDLFEKLCRNRR-YLYVRLDGTMSIKKRAKIVERFNNPS----------- 168 (346)
T ss_dssp HHHHHHHHHHHH--HHCCCEEEEEESCHHHHHHHHHHHHHHT-CCEEEECSSCCHHHHHHHHHHHHSTT-----------
T ss_pred HHHHHHHHHHHH--HhcCCceeEEeehhhhhHHHHHHHhhhh-ccccccccchhHHHHHHHHHhhhccc-----------
Confidence 344555555432 2346899999999999999999999998 79999999999999999999999862
Q ss_pred CCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccC
Q 031433 88 GDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLA 146 (159)
Q Consensus 88 ~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~ 146 (159)
.+..-+|++|.+ .+.|+|++.+++||+||++|++..+.|++||+-|
T Consensus 169 ---------~~~~vlLls~~a----gg~GlnL~~a~~vi~~d~~wnp~~~~Qa~~R~~R 214 (346)
T d1z3ix1 169 ---------SPEFIFMLSSKA----GGCGLNLIGANRLVMFDPDWNPANDEQAMARVWR 214 (346)
T ss_dssp ---------CCCCEEEEEGGG----SCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSS
T ss_pred ---------ccceeeeecchh----hhhccccccceEEEEecCCCccchHhHhhhcccc
Confidence 001236778888 9999999999999999999999999999999933
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Probab=99.59 E-value=1.2e-15 Score=119.13 Aligned_cols=92 Identities=13% Similarity=0.053 Sum_probs=77.1
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEE
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMI 103 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL 103 (159)
.+.+++|||++++.++.+++.|++.+ ..+..+||++.++.+ ..|+++ ..+++
T Consensus 177 ~~~~~lvf~~~~~~~~~l~~~L~~~~-~~~~~l~~~~~~~~~----~~~~~~-----------------------~~~~l 228 (305)
T d2bmfa2 177 FKGKTVWFVPSIKAGNDIAACLRKNG-KKVIQLSRKTFDSEY----IKTRTN-----------------------DWDFV 228 (305)
T ss_dssp SCSCEEEECSCHHHHHHHHHHHHHHT-CCCEECCTTCHHHHG----GGGGTS-----------------------CCSEE
T ss_pred hCCCEEEEeccHHHHHHHHHHHHhCC-CCEEEeCCcChHHHH----hhhhcc-----------------------chhhh
Confidence 45789999999999999999999998 599999999876554 457777 89999
Q ss_pred EEecCCCCCCcCCCCCCCCCeEE----------EccC----------CCChhHHHhhhhcccCCC
Q 031433 104 VVTDACLPLLSSGESAISARVLI----------NYEL----------PTKKETYIRRMTTCLAAG 148 (159)
Q Consensus 104 V~Td~~~~~~~rGid~~~v~~VI----------~~d~----------P~~~~~yi~R~GR~~~~~ 148 (159)
|+|++ +++|+|+ +++.|| +||. |-+..+|+||+||+||.+
T Consensus 229 vaT~~----~~~G~~~-~~~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GR~GR~~ 288 (305)
T d2bmfa2 229 VTTDI----SEMGANF-KAERVIDPRRCMKPVILTDGEERVILAGPMPVTHSSAAQRRGRVGRNP 288 (305)
T ss_dssp EECGG----GGTTCCC-CCSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCSS
T ss_pred hhhHH----HHhcCCC-CccEEEEcCCceeeeEecCCCCceEEeccccCCHHHHhhhhcCcCcCC
Confidence 99999 9999999 455554 4454 457889999999998876
|
| >d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=99.51 E-value=7.5e-15 Score=116.90 Aligned_cols=97 Identities=13% Similarity=0.117 Sum_probs=76.9
Q ss_pred CCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEEE
Q 031433 25 GLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIV 104 (159)
Q Consensus 25 ~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLV 104 (159)
+.+++|||++...++.+++.|++.| .++..|||.+..+++. +|+++ +.+++|
T Consensus 36 ~g~~~~F~~s~~~~~~~a~~L~~~g-~~V~~l~~~~~~~e~~----~~~~~-----------------------~~~~~~ 87 (299)
T d1yksa2 36 KRPTAWFLPSIRAANVMAASLRKAG-KSVVVLNRKTFEREYP----TIKQK-----------------------KPDFIL 87 (299)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTT-CCEEECCSSSCC------------C-----------------------CCSEEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhcC-CeEEEEcCcCcHhHHh----hhhcC-----------------------CcCEEE
Confidence 5789999999999999999999998 5999999999987754 46777 799999
Q ss_pred EecCCCCCCcCCCCCCCCCeEEEccCC-------------------CChhHHHhhhhcccCCCCeEEEE
Q 031433 105 VTDACLPLLSSGESAISARVLINYELP-------------------TKKETYIRRMTTCLAAGTSFSDI 154 (159)
Q Consensus 105 ~Td~~~~~~~rGid~~~v~~VI~~d~P-------------------~~~~~yi~R~GR~~~~~g~~i~~ 154 (159)
|||+ ++.|+|+ ++.+||++.++ -+..+-.||.||+||.++.+..+
T Consensus 88 ~t~~----~~~~~~~-~~~~vid~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~qr~gr~gr~~~~~~~~ 151 (299)
T d1yksa2 88 ATDI----AEMGANL-CVERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDS 151 (299)
T ss_dssp ESSS----TTCCTTC-CCSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEE
T ss_pred Eech----hhhceec-CceEEEecCceeceeeecCCCCeeEEeeeecCHHHHHHhcccccccCCCceEE
Confidence 9999 9999999 69999977653 24566689999999976555443
|
| >d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Bacillus subtilis [TaxId: 1423]
Probab=99.36 E-value=2.7e-12 Score=94.35 Aligned_cols=125 Identities=13% Similarity=0.105 Sum_probs=98.5
Q ss_pred eecCcHHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhccccccccc
Q 031433 3 VSFTFQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQK 82 (159)
Q Consensus 3 v~~~~~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~ 82 (159)
||.+..++...+++.+......+.++||+|.|.+..+.+++.|++.+ +...+++.....++ ..+-.....
T Consensus 12 vf~T~~eK~~AIi~eV~~~~~~grPVLIgT~SIe~SE~ls~~L~~~g-i~h~vLnAk~~~~E--a~II~~Ag~------- 81 (175)
T d1tf5a4 12 IYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKG-IPHQVLNAKNHERE--AQIIEEAGQ------- 81 (175)
T ss_dssp EESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTT-CCCEEECSSCHHHH--HHHHTTTTS-------
T ss_pred EEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcC-CCceeehhhhHHHH--HHHHHhccC-------
Confidence 67777888888888776656678999999999999999999999998 79999998754333 222222221
Q ss_pred ccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCC---CC-----eEEEccCCCChhHHHhhhhcccCCC--CeEE
Q 031433 83 VTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAIS---AR-----VLINYELPTKKETYIRRMTTCLAAG--TSFS 152 (159)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~---v~-----~VI~~d~P~~~~~yi~R~GR~~~~~--g~~i 152 (159)
.-.|.|+|++ ++||.|+.- |. |||.-..|.+.....|-.||++|++ |.+.
T Consensus 82 ----------------~g~VtIATNm----AGRGtDikl~~~v~~~GGLhVI~t~~~~s~Rid~Ql~GR~gRQGdpGs~~ 141 (175)
T d1tf5a4 82 ----------------KGAVTIATNM----AGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQ 141 (175)
T ss_dssp ----------------TTCEEEEETT----SSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEE
T ss_pred ----------------CCceeehhhH----HHcCCCccchHHHHhCCCcEEEEeccCcchhHHHHHhcchhhhCCCcccE
Confidence 5679999999 999999854 22 7999999999999999999997765 6666
Q ss_pred EEEEe
Q 031433 153 DIILL 157 (159)
Q Consensus 153 ~~v~~ 157 (159)
-|+++
T Consensus 142 ~~~sl 146 (175)
T d1tf5a4 142 FYLSM 146 (175)
T ss_dssp EEEET
T ss_pred EEEEc
Confidence 66654
|
| >d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.45 E-value=1.9e-06 Score=64.23 Aligned_cols=123 Identities=11% Similarity=0.117 Sum_probs=93.7
Q ss_pred eecCcHHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHH-HHHHHhcccccccc
Q 031433 3 VSFTFQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTL-ILEEFRHTAMKWNQ 81 (159)
Q Consensus 3 v~~~~~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~-~l~~F~~~~~~~~~ 81 (159)
||.+..++...+++.+......+.|+||.+.|.+..+.+++.|.+.+ +.+.+|+..-. +|+. ++.+ .|.
T Consensus 12 Vy~T~~~K~~Avv~ei~~~h~~GqPVLVGT~SVe~SE~lS~lL~~~g-i~h~vLNAK~h--erEAeIIAq--AG~----- 81 (219)
T d1nkta4 12 IYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRR-IPHNVLNAKYH--EQEATIIAV--AGR----- 81 (219)
T ss_dssp EESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTT-CCCEEECSSCH--HHHHHHHHT--TTS-----
T ss_pred EEcCHHHHHHHHHHHHHHHHhcCCCEEEeeCcHHHHHHHHHHHHHhc-cchhccchhhH--HHHHHHHHh--ccc-----
Confidence 56777888888888777767789999999999999999999999998 89999999643 3333 3332 221
Q ss_pred cccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCC---------------------------------------
Q 031433 82 KVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISA--------------------------------------- 122 (159)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v--------------------------------------- 122 (159)
.-.|-|+|++ ++||.|+.--
T Consensus 82 -----------------~GaVTIATNM----AGRGTDI~LGgn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (219)
T d1nkta4 82 -----------------RGGVTVATNM----AGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEE 140 (219)
T ss_dssp -----------------TTCEEEEETT----CSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHH
T ss_pred -----------------CCcEEeeccc----cCCCCceeecCchhhhhHHHhhhcccCcccCHHHHHHHHHHHHHHHHHH
Confidence 5679999999 9999999431
Q ss_pred -------------CeEEEccCCCChhHHHhhhhcccCCC--CeEEEEEE
Q 031433 123 -------------RVLINYELPTKKETYIRRMTTCLAAG--TSFSDIIL 156 (159)
Q Consensus 123 -------------~~VI~~d~P~~~~~yi~R~GR~~~~~--g~~i~~v~ 156 (159)
=+||--+--.+..-=-|=.||+||++ |...-|++
T Consensus 141 ~~~~~~~V~~~GGL~VIGTErHeSrRIDnQLRGRsGRQGDPGsSrFflS 189 (219)
T d1nkta4 141 ASKEAKEVIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLS 189 (219)
T ss_dssp TTHHHHHHHHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEE
T ss_pred HHHHHHHHHhcCCcEEEeccccccccccccccccccccCCCccceeEEe
Confidence 15777777777777778889998876 44444443
|
| >d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.93 E-value=0.0028 Score=48.12 Aligned_cols=91 Identities=13% Similarity=0.096 Sum_probs=68.5
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhc----CCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCc
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSN----LADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHK 99 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~----~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (159)
.+.++++-++|.--+....+.+++ .| +.+..+||+++..+|.+++.+.++| +
T Consensus 131 ~g~q~~~m~Pt~~La~Qh~~~~~~~f~~~~-~~v~~l~~~~~~~~r~~~~~~~~~g-----------------------~ 186 (264)
T d1gm5a3 131 AGFQTAFMVPTSILAIQHYRRTVESFSKFN-IHVALLIGATTPSEKEKIKSGLRNG-----------------------Q 186 (264)
T ss_dssp HTSCEEEECSCHHHHHHHHHHHHHHHTCSS-CCEEECCSSSCHHHHHHHHHHHHSS-----------------------C
T ss_pred cccceeEEeehHhhhHHHHHHHHHhhhhcc-ccceeeccccchHHHHHHHHHHHCC-----------------------C
Confidence 478999999998887766655554 45 7999999999999999999999998 8
Q ss_pred eeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhc
Q 031433 100 SHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTT 143 (159)
Q Consensus 100 ~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR 143 (159)
++|+|.|-. ++...+.+.+..+||--+ ..-..|-||-+-
T Consensus 187 ~~iiIGThs---l~~~~~~f~~LglviiDE--qH~fgv~Qr~~l 225 (264)
T d1gm5a3 187 IDVVIGTHA---LIQEDVHFKNLGLVIIDE--QHRFGVKQREAL 225 (264)
T ss_dssp CCEEEECTT---HHHHCCCCSCCCEEEEES--CCCC-----CCC
T ss_pred CCEEEeehH---HhcCCCCccccceeeecc--ccccchhhHHHH
Confidence 999999987 345568888998887544 334456666543
|
| >d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=96.46 E-value=0.012 Score=43.76 Aligned_cols=78 Identities=17% Similarity=0.118 Sum_probs=66.8
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhc----CCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCC
Q 031433 23 RPGLPMIVCCSSRDELDAVCSAVSN----LADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEH 98 (159)
Q Consensus 23 ~~~~k~iIF~ns~~~~~~l~~~L~~----~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (159)
..++++++-+++.--+....+.+++ .+ +.+..+||.++..+|.++++....|
T Consensus 102 ~~g~qv~~l~Pt~~La~Q~~~~~~~~~~~~~-~~v~~l~~~~~~~~~~~~~~~~~~g----------------------- 157 (233)
T d2eyqa3 102 DNHKQVAVLVPTTLLAQQHYDNFRDRFANWP-VRIEMISRFRSAKEQTQILAEVAEG----------------------- 157 (233)
T ss_dssp TTTCEEEEECSSHHHHHHHHHHHHHHSTTTT-CCEEEESTTSCHHHHHHHHHHHHTT-----------------------
T ss_pred HcCCceEEEccHHHhHHHHHHHHHHHHhhCC-CEEEeccCcccchhHHHHHHHHhCC-----------------------
Confidence 4689999999999999988888886 34 6899999999999999999999999
Q ss_pred ceeEEEEecCCCCCCcCCCCCCCCCeEEE
Q 031433 99 KSHMIVVTDACLPLLSSGESAISARVLIN 127 (159)
Q Consensus 99 ~~~vLV~Td~~~~~~~rGid~~~v~~VI~ 127 (159)
+.+|+|-|-. ++...+.+++..+||-
T Consensus 158 ~~~iviGths---~l~~~~~f~~LgLiIi 183 (233)
T d2eyqa3 158 KIDILIGTHK---LLQSDVKFKDLGLLIV 183 (233)
T ss_dssp CCSEEEECTH---HHHSCCCCSSEEEEEE
T ss_pred CCCEEEeehh---hhccCCccccccceee
Confidence 8999999986 1444688888888764
|
| >d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=94.04 E-value=0.14 Score=36.39 Aligned_cols=80 Identities=14% Similarity=0.189 Sum_probs=56.9
Q ss_pred CCCCCcEEEEeCchHHHHHHHHHHhcC---CCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCC
Q 031433 22 RRPGLPMIVCCSSRDELDAVCSAVSNL---ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEH 98 (159)
Q Consensus 22 ~~~~~k~iIF~ns~~~~~~l~~~L~~~---~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (159)
...+.+++|.|++++.+..+.+.+... ....+...+|+.+..+..+.+ +
T Consensus 69 ~~~~~~~lil~pt~~l~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l----~------------------------ 120 (208)
T d1hv8a1 69 ENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKAL----K------------------------ 120 (208)
T ss_dssp SSSSCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHH----H------------------------
T ss_pred cccCcceEEEeeccccchhhhhhhhhhcccCCeEEEEeeCCCChHHHHHhc----C------------------------
Confidence 455679999999999999887777653 336888999998877755443 2
Q ss_pred ceeEEEEecCCC-CCC-cCCCCCCCCCeEEEcc
Q 031433 99 KSHMIVVTDACL-PLL-SSGESAISARVLINYE 129 (159)
Q Consensus 99 ~~~vLV~Td~~~-~~~-~rGid~~~v~~VI~~d 129 (159)
..+|+|+|+-++ .++ ...+++.+++++|--+
T Consensus 121 ~~~IlV~TP~~l~~~l~~~~~~~~~l~~lViDE 153 (208)
T d1hv8a1 121 NANIVVGTPGRILDHINRGTLNLKNVKYFILDE 153 (208)
T ss_dssp TCSEEEECHHHHHHHHHTTCSCTTSCCEEEEET
T ss_pred CCCEEEEChHHHHHHHHcCCCCcccCcEEEEEC
Confidence 367999995310 002 4467899999987544
|
| >d1tq1a_ c.46.1.3 (A:) Thiosulfate sulfurtransferase/Senescence-associated protein {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Rhodanese/Cell cycle control phosphatase superfamily: Rhodanese/Cell cycle control phosphatase family: Single-domain sulfurtransferase domain: Thiosulfate sulfurtransferase/Senescence-associated protein species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=93.86 E-value=0.025 Score=36.97 Aligned_cols=39 Identities=10% Similarity=0.040 Sum_probs=34.4
Q ss_pred CCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCC
Q 031433 22 RRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDL 60 (159)
Q Consensus 22 ~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~ 60 (159)
..+.+++|++|++-.+....+..|.+.|+-++..+.|++
T Consensus 69 ~~~~~~iv~~C~~G~rs~~a~~~L~~~G~~nv~~l~GG~ 107 (119)
T d1tq1a_ 69 FGQSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGY 107 (119)
T ss_dssp CCTTSSEEEEESSCSHHHHHHHHHHHHHCCSEEEEECCH
T ss_pred cCCCcEEEEEcCCcCcHHHHHHHHHhcccCCeEEecChH
Confidence 456789999999999999999999999866799999997
|
| >d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.11 E-value=0.22 Score=35.85 Aligned_cols=87 Identities=9% Similarity=0.074 Sum_probs=59.9
Q ss_pred HHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcC---CCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCC
Q 031433 13 ELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL---ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGD 89 (159)
Q Consensus 13 ~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~---~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~ 89 (159)
-+++.+.. .....+++|+|+|++-+..+++.++.. ..+.+..++|+.+..+....+ +.
T Consensus 74 Pil~~l~~-~~~~~~~lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~g~~~~~~~~~~l---~~--------------- 134 (222)
T d2j0sa1 74 SVLQCLDI-QVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKL---DY--------------- 134 (222)
T ss_dssp HHHHTCCT-TSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHH---HH---------------
T ss_pred cccccccc-cccCceeEEecchHHHHHHHHHHHHHHhCccceeEEEEeecccchhhHHHh---cc---------------
Confidence 34443333 344578999999999999888777653 236889999998877655444 33
Q ss_pred CCCCCCCCCceeEEEEecCCC--CCCcCCCCCCCCCeEEE
Q 031433 90 ESETGKDEHKSHMIVVTDACL--PLLSSGESAISARVLIN 127 (159)
Q Consensus 90 ~~~~~~~~~~~~vLV~Td~~~--~~~~rGid~~~v~~VI~ 127 (159)
..+|+|+|+-++ -+....+++.+++++|.
T Consensus 135 ---------~~~Ilv~TPgrl~~~~~~~~~~~~~l~~lVl 165 (222)
T d2j0sa1 135 ---------GQHVVAGTPGRVFDMIRRRSLRTRAIKMLVL 165 (222)
T ss_dssp ---------CCSEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred ---------CCeEEeCCCCcHHhcccccccccccceeeee
Confidence 478999996410 00256788899999884
|
| >d1gmxa_ c.46.1.3 (A:) Sulfurtransferase GlpE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Rhodanese/Cell cycle control phosphatase superfamily: Rhodanese/Cell cycle control phosphatase family: Single-domain sulfurtransferase domain: Sulfurtransferase GlpE species: Escherichia coli [TaxId: 562]
Probab=91.54 E-value=0.11 Score=33.17 Aligned_cols=51 Identities=12% Similarity=0.140 Sum_probs=39.1
Q ss_pred cHHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCC
Q 031433 7 FQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 61 (159)
Q Consensus 7 ~~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~ 61 (159)
+.+.+...+.. ..+.+++|++|++-..+...+..|.+.|+-++..+.|++.
T Consensus 44 p~~~l~~~~~~----~~~~~~ivv~c~~g~rs~~~a~~L~~~G~~~v~~l~GG~~ 94 (108)
T d1gmxa_ 44 TNDTLGAFMRD----NDFDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFE 94 (108)
T ss_dssp CHHHHHHHHHH----SCTTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHH
T ss_pred cchhHHHHhhh----ccccCcccccCCCChHHHHHHHHHHHcCCCCEEEEcChHH
Confidence 34445444443 3557899999999999999999999998546888999863
|
| >d1urha2 c.46.1.2 (A:149-268) 3-mercaptopyruvate sulfurtransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Rhodanese/Cell cycle control phosphatase superfamily: Rhodanese/Cell cycle control phosphatase family: Multidomain sulfurtransferase (rhodanese) domain: 3-mercaptopyruvate sulfurtransferase species: Escherichia coli [TaxId: 562]
Probab=90.44 E-value=0.25 Score=31.58 Aligned_cols=40 Identities=20% Similarity=0.191 Sum_probs=33.2
Q ss_pred CCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCC
Q 031433 22 RRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 61 (159)
Q Consensus 22 ~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~ 61 (159)
..+.+++|+||++-.++-..+..|+..|+-++..+.|++.
T Consensus 79 ~~~~~~ii~yC~sG~~A~~~~~~L~~lG~~~v~~y~Gs~~ 118 (120)
T d1urha2 79 VSYDKPIIVSCGSGVTAAVVLLALATLDVPNVKLYDGAWS 118 (120)
T ss_dssp CCSSSCEEEECCSSSTHHHHHHHHHHTTCSSCEEECCSCC
T ss_pred cCccCceEEEccchhHHHHHHHHHHHcCCCCceEcCCChh
Confidence 4556899999999988988899999888656888888875
|
| >d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.93 E-value=0.74 Score=32.33 Aligned_cols=90 Identities=11% Similarity=0.176 Sum_probs=59.7
Q ss_pred HHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcC----CCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCC
Q 031433 13 ELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL----ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSG 88 (159)
Q Consensus 13 ~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~----~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~ 88 (159)
-+++.+.. .....+++|.|++++-+..+.+.++.. +.+....++|+.+....... ..+.
T Consensus 58 p~l~~~~~-~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---l~~~------------- 120 (207)
T d1t6na_ 58 ATLQQLEP-VTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV---LKKN------------- 120 (207)
T ss_dssp HHHHHCCC-CTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHH---HHHS-------------
T ss_pred ceeeeecc-cCCCceEEEEeccchhhHHHHHHHHHHHhhCCCceeEEEeccccHHHHHHH---HHhc-------------
Confidence 34443333 444578999999999999888887754 23567888888876664433 3333
Q ss_pred CCCCCCCCCCceeEEEEecCCCCC--CcCCCCCCCCCeEEEcc
Q 031433 89 DESETGKDEHKSHMIVVTDACLPL--LSSGESAISARVLINYE 129 (159)
Q Consensus 89 ~~~~~~~~~~~~~vLV~Td~~~~~--~~rGid~~~v~~VI~~d 129 (159)
..+|+|+|+-++-. -...+++.++.++|--+
T Consensus 121 ----------~~~ilI~TP~rl~~~~~~~~~~l~~l~~lVlDE 153 (207)
T d1t6na_ 121 ----------CPHIVVGTPGRILALARNKSLNLKHIKHFILDE 153 (207)
T ss_dssp ----------CCSEEEECHHHHHHHHHTTSSCCTTCCEEEEES
T ss_pred ----------CCCEEEeCcchhhhhccCCceeccccceeehhh
Confidence 58899999752110 12467889999888544
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=89.09 E-value=0.71 Score=32.71 Aligned_cols=77 Identities=10% Similarity=0.133 Sum_probs=52.6
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhcC----C---CccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCC
Q 031433 23 RPGLPMIVCCSSRDELDAVCSAVSNL----A---DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGK 95 (159)
Q Consensus 23 ~~~~k~iIF~ns~~~~~~l~~~L~~~----~---~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~ 95 (159)
..++++||.++++.-++.+++.+++. + .......+++....++...++...
T Consensus 84 ~~~~rvliv~Pt~~La~Q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---------------------- 141 (237)
T d1gkub1 84 LKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLR---------------------- 141 (237)
T ss_dssp TTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGG----------------------
T ss_pred HhcCeEEEEeccHHHHHHHHHHHHHHHHHcCCceEEEEeeeecccchhhhhhhhcccc----------------------
Confidence 34689999999999999988888753 1 134566777777777766655332
Q ss_pred CCCceeEEEEecCCCCCCcCC-CCCCCCCeEEE
Q 031433 96 DEHKSHMIVVTDACLPLLSSG-ESAISARVLIN 127 (159)
Q Consensus 96 ~~~~~~vLV~Td~~~~~~~rG-id~~~v~~VI~ 127 (159)
...|+|+|.-. +.+. .+..++++||.
T Consensus 142 ---~~~Ilv~Tp~~---l~~~~~~~~~~~~vVv 168 (237)
T d1gkub1 142 ---NFKIVITTTQF---LSKHYRELGHFDFIFV 168 (237)
T ss_dssp ---GCSEEEEEHHH---HHHCSTTSCCCSEEEE
T ss_pred ---ccceeccChHH---HHHhhhhcCCCCEEEE
Confidence 36789998531 3333 45567888775
|
| >d1yt8a1 c.46.1.2 (A:107-242) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Rhodanese/Cell cycle control phosphatase superfamily: Rhodanese/Cell cycle control phosphatase family: Multidomain sulfurtransferase (rhodanese) domain: Thiosulfate sulfurtransferase PA2603 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=89.04 E-value=0.32 Score=32.20 Aligned_cols=51 Identities=18% Similarity=0.163 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCcc-EEEeecCC
Q 031433 8 QETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADIS-FSSLHSDL 60 (159)
Q Consensus 8 ~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~-~~~l~~~~ 60 (159)
...+...+..+. ..+..++++||++-......+.+|+..|+-+ +..|.|++
T Consensus 65 ~~~l~~~~~~l~--~~~~~~iV~~C~~g~rs~~aa~~L~~~G~~~~V~~L~GG~ 116 (136)
T d1yt8a1 65 GAELVLRVAELA--PDPRTRVIVNCAGRTRSIIGTQSLLNAGIPNPVAALRNGT 116 (136)
T ss_dssp GGGHHHHHHHHC--CSTTSEEEEECSSSHHHHHHHHHHHHTTCSSCEEEETTHH
T ss_pred hhHHHHHhhccc--ccccceEEEEcCCCCchHHHHHHHHHcCCCceEEEeCCcH
Confidence 344555555443 2345789999999999999999999998544 78899985
|
| >d1yt8a4 c.46.1.2 (A:243-372) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Rhodanese/Cell cycle control phosphatase superfamily: Rhodanese/Cell cycle control phosphatase family: Multidomain sulfurtransferase (rhodanese) domain: Thiosulfate sulfurtransferase PA2603 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=88.92 E-value=0.21 Score=32.77 Aligned_cols=39 Identities=8% Similarity=0.025 Sum_probs=34.2
Q ss_pred CCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCC
Q 031433 22 RRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 61 (159)
Q Consensus 22 ~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~ 61 (159)
..+.+++++||++-......+..|++.|+ ++..|.|++.
T Consensus 77 ~~~~~~ivl~C~~G~rS~~aa~~L~~~G~-~v~~l~GG~~ 115 (130)
T d1yt8a4 77 SVRGARLVLVDDDGVRANMSASWLAQMGW-QVAVLDGLSE 115 (130)
T ss_dssp CSBTCEEEEECSSSSHHHHHHHHHHHTTC-EEEEECSCCG
T ss_pred CCccceEEeecCCCccHHHHHHHHHHcCC-CeEEEcCchH
Confidence 45578999999999899999999999995 9999999874
|
| >d2eyqa2 c.37.1.19 (A:349-465) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=88.88 E-value=0.25 Score=32.09 Aligned_cols=63 Identities=11% Similarity=0.084 Sum_probs=45.6
Q ss_pred CCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEEE
Q 031433 25 GLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIV 104 (159)
Q Consensus 25 ~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLV 104 (159)
..++||+|.+....+.|.+.|++.+ +.+..+.+.. +|..+ . +.|
T Consensus 34 ~~~Vli~a~s~g~~erl~e~L~~~~-i~~~~~~~~~----------~~~~~-----------------------~--~~i 77 (117)
T d2eyqa2 34 DGPVVFSVESEGRREALGELLARIK-IAPQRIMRLD----------EASDR-----------------------G--RYL 77 (117)
T ss_dssp CSCCCEEESSHHHHHHHHHHHGGGT-CCCEECSSGG----------GCCTT-----------------------C--CEE
T ss_pred CCeEEEEECCccHHHHHHHHHHHcC-CCceEecChh----------hhcCc-----------------------e--EEE
Confidence 5689999999999999999999997 6765554321 23332 3 445
Q ss_pred EecCCCCCCcCCCCCCCCCeEEE
Q 031433 105 VTDACLPLLSSGESAISARVLIN 127 (159)
Q Consensus 105 ~Td~~~~~~~rGid~~~v~~VI~ 127 (159)
+... +..|.-+++.+++|-
T Consensus 78 ~~~~----l~~GF~~~~~~l~vI 96 (117)
T d2eyqa2 78 MIGA----AEHGFVDTVRNLALI 96 (117)
T ss_dssp EECC----CCSCEEETTTTEEEE
T ss_pred EEec----CccccccCCCCEEEE
Confidence 5555 889988888888764
|
| >d1qxna_ c.46.1.3 (A:) Polysulfide-sulfur transferase (sulfide dehydrogenase, Sud) {Wolinella succinogenes [TaxId: 844]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Rhodanese/Cell cycle control phosphatase superfamily: Rhodanese/Cell cycle control phosphatase family: Single-domain sulfurtransferase domain: Polysulfide-sulfur transferase (sulfide dehydrogenase, Sud) species: Wolinella succinogenes [TaxId: 844]
Probab=88.87 E-value=0.14 Score=34.19 Aligned_cols=39 Identities=10% Similarity=0.218 Sum_probs=33.8
Q ss_pred CCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCC
Q 031433 22 RRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDL 60 (159)
Q Consensus 22 ~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~ 60 (159)
..+.+++|+||++-..+...+..|++.|+-++..+.|++
T Consensus 79 ~~~~~~ivvyC~~G~rs~~aa~~L~~~G~~nV~~l~GG~ 117 (137)
T d1qxna_ 79 LDPEKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGM 117 (137)
T ss_dssp CCTTSCEEEECCSSSCHHHHHHHHHHHTCSCEEEESSCH
T ss_pred cCcccceeeeecccchHHHHHHHHHHcCCCcEEEecCHH
Confidence 456789999999999999999999999865788899985
|
| >d1yt8a2 c.46.1.2 (A:6-106) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Rhodanese/Cell cycle control phosphatase superfamily: Rhodanese/Cell cycle control phosphatase family: Multidomain sulfurtransferase (rhodanese) domain: Thiosulfate sulfurtransferase PA2603 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=87.30 E-value=0.62 Score=28.62 Aligned_cols=39 Identities=15% Similarity=0.174 Sum_probs=33.4
Q ss_pred CCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCC
Q 031433 22 RRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDL 60 (159)
Q Consensus 22 ~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~ 60 (159)
....++++++|++-..+...+..|.+.|+-++..|.|++
T Consensus 55 ~~~~~~vv~~~~~g~~s~~~~~~l~~~G~~nV~~l~GG~ 93 (101)
T d1yt8a2 55 PRRDTPITVYDDGEGLAPVAAQRLHDLGYSDVALLDGGL 93 (101)
T ss_dssp CCTTSCEEEECSSSSHHHHHHHHHHHTTCSSEEEETTHH
T ss_pred cccCceeeeccchhhhHHHHHHHHHHcCCCcEEEeCChH
Confidence 345688999999999999999999999866788888886
|
| >d1e0ca2 c.46.1.2 (A:136-271) Sulfurtransferase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Rhodanese/Cell cycle control phosphatase superfamily: Rhodanese/Cell cycle control phosphatase family: Multidomain sulfurtransferase (rhodanese) domain: Sulfurtransferase species: Azotobacter vinelandii [TaxId: 354]
Probab=84.78 E-value=0.26 Score=32.69 Aligned_cols=50 Identities=8% Similarity=0.092 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCC
Q 031433 9 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDL 60 (159)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~ 60 (159)
+.+.+++..+- ..+.+++|+||++-..+...+..|+..|+-++..+.|++
T Consensus 74 ~~l~~~~~~~g--i~~~~~vV~yC~~G~~a~~~~~~l~~~G~~~v~~ydGg~ 123 (136)
T d1e0ca2 74 TDIAGRLEELG--ITPDKEIVTHCQTHHRSGLTYLIAKALGYPRVKGYAGSW 123 (136)
T ss_dssp TTHHHHHHHTT--CCTTSEEEEECSSSSHHHHHHHHHHHTTCSCEEECSSHH
T ss_pred HHHhhhhhhcc--cCCCCceEEeCCChHHHHHHHHHHHHcCCCCcEEecCCH
Confidence 44555665432 355799999999988888888999988864677777864
|
| >d1yt8a3 c.46.1.2 (A:373-529) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Rhodanese/Cell cycle control phosphatase superfamily: Rhodanese/Cell cycle control phosphatase family: Multidomain sulfurtransferase (rhodanese) domain: Thiosulfate sulfurtransferase PA2603 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=84.50 E-value=0.5 Score=31.84 Aligned_cols=44 Identities=11% Similarity=0.092 Sum_probs=36.9
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcc
Q 031433 23 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHT 75 (159)
Q Consensus 23 ~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~ 75 (159)
.+.++++++|++-..+...+..|...|+-++..|.|++ +.|+..
T Consensus 56 ~~~~~vv~~c~~g~rs~~~a~~l~~~G~~~v~~L~GG~---------~~W~~a 99 (157)
T d1yt8a3 56 GTAERYVLTCGSSLLARFAVAEVQALSGKPVFLLDGGT---------SAWVAA 99 (157)
T ss_dssp CCCSEEEEECSSSHHHHHHHHHHHHHHCSCEEEETTHH---------HHHHHT
T ss_pred ccCcceeeccCCcchHHHHHHHHhcccCceEEEecCCH---------HHHhhC
Confidence 45689999999999999999999998866899999985 667664
|
| >d1uara2 c.46.1.2 (A:145-285) Sulfurtransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Rhodanese/Cell cycle control phosphatase superfamily: Rhodanese/Cell cycle control phosphatase family: Multidomain sulfurtransferase (rhodanese) domain: Sulfurtransferase species: Thermus thermophilus [TaxId: 274]
Probab=83.77 E-value=1.1 Score=29.63 Aligned_cols=51 Identities=12% Similarity=0.122 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhc-CCCccEEEeecCC
Q 031433 8 QETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSN-LADISFSSLHSDL 60 (159)
Q Consensus 8 ~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~-~~~i~~~~l~~~~ 60 (159)
.+.+.+++..+ . -.+++++|+||++-.++-..+-.|+. .|+-++..+.|++
T Consensus 74 ~~~~~~~~~~~-g-i~~d~~vV~yC~~G~~As~~~~~l~~~~G~~~v~~ydGs~ 125 (141)
T d1uara2 74 AEELRALYEPL-G-ITKDKDIVVYCRIAERSSHSWFVLKYLLGYPHVKNYDGSW 125 (141)
T ss_dssp HHHHHHHHGGG-T-CCTTSEEEEECSSHHHHHHHHHHHHTTSCCSCEEEESSHH
T ss_pred HHHHHHHHHHh-C-CCCCCeEEEEecCcchHHHHHHHHHHHcCCCCeeEeCCcH
Confidence 44455555422 1 35578999999998888888888875 5755688888875
|
| >d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.48 E-value=1.4 Score=31.04 Aligned_cols=88 Identities=14% Similarity=0.069 Sum_probs=50.8
Q ss_pred HHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcC---CCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCC
Q 031433 13 ELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL---ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGD 89 (159)
Q Consensus 13 ~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~---~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~ 89 (159)
-+++.+.. .....+++|.|++++.+..+...+... ..+....++++-+..++...+ +
T Consensus 67 p~i~~l~~-~~~~~~~lil~pt~el~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--------------- 126 (212)
T d1qdea_ 67 AALQRIDT-SVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGL----R--------------- 126 (212)
T ss_dssp HHHHHCCT-TCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------C----T---------------
T ss_pred hhHhhhhc-cCCCcceEEEcccHHHhhhhhhhhcccccccccceeeEeeccchhHHHHHh----c---------------
Confidence 34444433 445679999999999999888877653 224666667665544432211 1
Q ss_pred CCCCCCCCCceeEEEEecCCCC--CCcCCCCCCCCCeEEEcc
Q 031433 90 ESETGKDEHKSHMIVVTDACLP--LLSSGESAISARVLINYE 129 (159)
Q Consensus 90 ~~~~~~~~~~~~vLV~Td~~~~--~~~rGid~~~v~~VI~~d 129 (159)
..+|+|+|+-.+- +...++++.+++++|--+
T Consensus 127 ---------~~~IvI~TP~~l~~~~~~~~~~l~~l~~lVlDE 159 (212)
T d1qdea_ 127 ---------DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDE 159 (212)
T ss_dssp ---------TCSEEEECHHHHHHHHHTTSSCCTTCCEEEEET
T ss_pred ---------CCcEEEECCCccccccccCceecCcceEEeehh
Confidence 4689999953100 024567888999987533
|
| >d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.36 E-value=0.47 Score=33.80 Aligned_cols=91 Identities=13% Similarity=0.060 Sum_probs=51.6
Q ss_pred HHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcC---CCccEEEeecCCCHHHHHHHHHHHhcccccccccccccC
Q 031433 11 LVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL---ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQS 87 (159)
Q Consensus 11 l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~---~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~ 87 (159)
++-+++.+.. .....++||+|+|++-+..+++.+... .......++++....+
T Consensus 67 llp~l~~i~~-~~~~~~alil~Pt~eL~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------- 122 (218)
T d2g9na1 67 AISILQQIEL-DLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRA----------------------- 122 (218)
T ss_dssp HHHHHHHCCT-TCCSCCEEEECSSHHHHHHHHHHHHHHHTTTTCCEEEECC--CCCS-----------------------
T ss_pred hhhhhheecc-cccCccEEEEcccchhhhhHHHHHhhhccccceeEEeeecccchhH-----------------------
Confidence 3344444433 455688999999999998887766653 2245555555332211
Q ss_pred CCCCCCCCCCCceeEEEEecCCCC--CCcCCCCCCCCCeEEEc
Q 031433 88 GDESETGKDEHKSHMIVVTDACLP--LLSSGESAISARVLINY 128 (159)
Q Consensus 88 ~~~~~~~~~~~~~~vLV~Td~~~~--~~~rGid~~~v~~VI~~ 128 (159)
..........+|+|+|+-.+- +......+..++++|--
T Consensus 123 ---~~~~~~~~~~~IvV~TP~rl~~~l~~~~~~~~~l~~lVlD 162 (218)
T d2g9na1 123 ---EVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLD 162 (218)
T ss_dssp ---TTTSSSSCCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEE
T ss_pred ---HHHHHhcCCCEEEEeCChhHHHHHhcCCcccccceEEEee
Confidence 001111125789999962100 02445778888888743
|
| >d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEAD box RNA helicase rck/p54 species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.83 E-value=2.5 Score=29.32 Aligned_cols=90 Identities=10% Similarity=0.144 Sum_probs=58.5
Q ss_pred HHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcC----CCccEEEeecCCCHHHHHHHHHHHhcccccccccccccC
Q 031433 12 VELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL----ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQS 87 (159)
Q Consensus 12 ~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~----~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~ 87 (159)
+-++..+.. .....+++|.|++++.+..+.+.+... ..+.....+|+....++...+ ..
T Consensus 59 lP~l~~~~~-~~~~~~~lil~pt~el~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l----~~------------ 121 (206)
T d1veca_ 59 IPLLERLDL-KKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRL----DD------------ 121 (206)
T ss_dssp HHHHHHCCT-TSCSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHT----TS------------
T ss_pred cchhhcccc-cccCcceEEEeecchhhHHHHHHHHHHhhcccCcccccccCCccHHHHHHHH----Hh------------
Confidence 334444433 455678999999999999888877643 225777888888776654333 22
Q ss_pred CCCCCCCCCCCceeEEEEecCCCC--CCcCCCCCCCCCeEEEcc
Q 031433 88 GDESETGKDEHKSHMIVVTDACLP--LLSSGESAISARVLINYE 129 (159)
Q Consensus 88 ~~~~~~~~~~~~~~vLV~Td~~~~--~~~rGid~~~v~~VI~~d 129 (159)
..+++|+|+-++- +....+++.+++++|.-+
T Consensus 122 -----------~~~ivv~TPgrl~~~~~~~~~~~~~l~~lVlDE 154 (206)
T d1veca_ 122 -----------TVHVVIATPGRILDLIKKGVAKVDHVQMIVLDE 154 (206)
T ss_dssp -----------CCSEEEECHHHHHHHHHTTCSCCTTCCEEEEET
T ss_pred -----------ccCeEEeCCccccccccchhccccccceEEEec
Confidence 5789999953100 023357788888877533
|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=81.34 E-value=3 Score=28.05 Aligned_cols=47 Identities=11% Similarity=0.114 Sum_probs=36.8
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcC---CCccEEEeecCCCHHHHHHHHH
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSNL---ADISFSSLHSDLAETERTLILE 70 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~~---~~i~~~~l~~~~~~~~R~~~l~ 70 (159)
.++++++.++++.-++..++.+++. ....+..+|++....+|...+.
T Consensus 51 ~~~~il~i~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 100 (200)
T d1wp9a1 51 YGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWA 100 (200)
T ss_dssp SCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHH
T ss_pred cCCcEEEEcCchHHHHHHHHHHHHhhcccccceeeeecccchhHHHHhhh
Confidence 4578999999999888877777764 2257888999999988876553
|
| >d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.06 E-value=4.6 Score=27.68 Aligned_cols=86 Identities=15% Similarity=0.111 Sum_probs=58.4
Q ss_pred HHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcC---CCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCC
Q 031433 14 LLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL---ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDE 90 (159)
Q Consensus 14 ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~---~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~ 90 (159)
++..+.. .....++++.+.+...+......+... ..+.+...+|+.........+ ..
T Consensus 59 ~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l---~~---------------- 118 (206)
T d1s2ma1 59 TLEKVKP-KLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRL---NE---------------- 118 (206)
T ss_dssp HHHHCCT-TSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHT---TS----------------
T ss_pred ccccccc-ccccccceeeccchhhhhhhhhhhhhcccccCeeEEeecCccchhhHHHHh---cc----------------
Confidence 3443333 455688899999999887776666543 337999999998877654433 33
Q ss_pred CCCCCCCCceeEEEEecCCCCC--CcCCCCCCCCCeEEE
Q 031433 91 SETGKDEHKSHMIVVTDACLPL--LSSGESAISARVLIN 127 (159)
Q Consensus 91 ~~~~~~~~~~~vLV~Td~~~~~--~~rGid~~~v~~VI~ 127 (159)
...|+|+|+..+-- -...+++.+++++|-
T Consensus 119 --------~~~Ili~TP~~l~~~l~~~~~~l~~l~~lV~ 149 (206)
T d1s2ma1 119 --------TVHILVGTPGRVLDLASRKVADLSDCSLFIM 149 (206)
T ss_dssp --------CCSEEEECHHHHHHHHHTTCSCCTTCCEEEE
T ss_pred --------cceEEEECCcccccccccceeecccceEEEe
Confidence 58999999641000 134678889998874
|
| >d1rhsa2 c.46.1.2 (A:150-293) Rhodanese {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Rhodanese/Cell cycle control phosphatase superfamily: Rhodanese/Cell cycle control phosphatase family: Multidomain sulfurtransferase (rhodanese) domain: Rhodanese species: Cow (Bos taurus) [TaxId: 9913]
Probab=80.47 E-value=1 Score=29.97 Aligned_cols=52 Identities=12% Similarity=0.054 Sum_probs=37.0
Q ss_pred cHHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCC
Q 031433 7 FQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDL 60 (159)
Q Consensus 7 ~~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~ 60 (159)
..+.+.+++...- -.+.+++|+||++--++-.++-.|...|+-.+..+.|++
T Consensus 75 ~~~~l~~~~~~~g--i~~~~~iI~yC~sG~~A~~~~~~l~~lG~~~v~~YdGsw 126 (144)
T d1rhsa2 75 SPEELRAMFEAKK--VDLTKPLIATCRKGVTACHIALAAYLCGKPDVAIYDGSW 126 (144)
T ss_dssp CHHHHHHHHHHTT--CCTTSCEEEECSSSSTHHHHHHHHHHTTCCCCEEESSHH
T ss_pred CHHHHHHHHHHcC--CCCCCCEEEEecccchHHHHHHHHHHcCCCCCEEeCCCH
Confidence 3455666665432 456789999999877777777888888854677777864
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| >d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase VlgB species: Flatworm (Dugesia japonica) [TaxId: 6161]
Probab=80.02 E-value=3.9 Score=29.02 Aligned_cols=79 Identities=10% Similarity=0.016 Sum_probs=53.8
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcC---CCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCce
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSNL---ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKS 100 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~~---~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (159)
...+++|.|++++.++.+.+.+... ..+.+..+.|+....++.+ .... ..
T Consensus 97 ~~~~alil~pt~el~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~----~~~~-----------------------~~ 149 (238)
T d1wrba1 97 AYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIR----EVQM-----------------------GC 149 (238)
T ss_dssp BCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHH----HHSS-----------------------CC
T ss_pred CCceEEEeccchhhhcchheeeeecccCCCcEEEEEeccchhhHHHh----hccc-----------------------CC
Confidence 3568999999999999888766543 2378888888876655432 1222 57
Q ss_pred eEEEEecCCCCC--CcCCCCCCCCCeEEEcc
Q 031433 101 HMIVVTDACLPL--LSSGESAISARVLINYE 129 (159)
Q Consensus 101 ~vLV~Td~~~~~--~~rGid~~~v~~VI~~d 129 (159)
+|+|+|+-.+-- -...+++.++.++|.-+
T Consensus 150 ~ivV~TP~~l~~~~~~~~~~l~~v~~lViDE 180 (238)
T d1wrba1 150 HLLVATPGRLVDFIEKNKISLEFCKYIVLDE 180 (238)
T ss_dssp SEEEECHHHHHHHHHTTSBCCTTCCEEEEET
T ss_pred ceeecCHHHHHhHHccCceeccccceeeeeh
Confidence 899999752100 13467889999887533
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