Citrus Sinensis ID: 031445

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------16
Protein Sequence
MRLQTVLIAVIVAAAFCGGDVAAQSSDCNNVLISMSPCLDYITGNSSRPSSSCCSELSNTVKSQPQCLCEVIKGGGSSASSLGINVNQTQAMALPSACNVQTPPVSRCNAASPNSPSGNGSKTVPSTNRVDSSNATKLTFSLLFFWLFVASYTSSFSAV
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHcccccccccccHHHHHcccccHHHHccccccccHHHHHHHHHHHccccccHHHHHHccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHccccccHHHHHHHHHccccccHHcccccccccccHHHHHHHHHccccHHHHHEEcccccccccccEEEcHHHHHccccHccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MRLQTVLIAVIVAAAFCggdvaaqssdcnnvlismspcldyitgnssrpsssccselsntvksqpqCLCEvikgggssasslginvnqtqamalpsacnvqtppvsrcnaaspnspsgngsktvpstnrvdssnatKLTFSLLFFWLFVASytssfsav
Flexible Loop (DISEMBL)
MRLQTVLIAVIVAAAFCGGDVAAQSSDCNNVLISMSPCLDYITGNSSRPSSSCCSELSNTVKSQPQCLCEVIKGGGSSASSLGINVNQTQAMALPSACNVQTPPVSRCNaaspnspsgngsktvpstnrvdSSNATKLTFSLLFFWLFVASYTSSFSAV
Low Complexity Region (SEG)
MRLQTVLIAVIVAAAFCGGDVAAQSSDCNNVLISMSPCLDYITGNssrpsssccselsNTVKSQPQCLCEVIKGGGSSASSLGINVNQTQAMALPSACNVQTPPVSRCNAASPNSPSGNGSKTVPSTNRVDSSNATKLTFSLLFFWLFVASYTSSFSAV
Disordered region (IsUnstruct)
***QTVLIAVIVAAAFCGGDVAAQSSDCNNVLISMSPCLDYITG*********************QCLCEVIKG*************************************************************TKLTFSLLFFWLFVASYT******
Disordered Region (DISOPRED)
**LQTVLIAVIVAAAFCGGD*******CNNVLISMSPCLDYIT*NSSRPS**CCSELSNTVKSQPQCLCEVIKGGGSSASSLGINVNQTQAMALPSACNVQTPPV*************************************LFFWLFVASYTSSFSAV
Disordered Region (DISEMBL)
MRLQTVLIAVIVAAAFCGGDVAAQSSDCNNVLISMSPCLDYIT******************KSQPQCLCEVIKGGGSSASSLGINVNQTQAMALPSACNVQT***************************VDSSNATKLTFSLLFFWLFVASYTSSFSAV
Disordered Region (DISPRO)
MRLQTVLIAVIVAAAFCGGDVAAQSSDCNNVLISMSPCLDYITGNSSRPSSSCCSELSNTVKSQPQCLCEVIKGGGSSASSLGINVNQTQAMALPSACNVQTPPVSRCNAA*************************KLTFSLLFFWLFVASYTSSFSAV
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MRLQTVLIAVIVAAAFCGGDVAAQSSDCNNVLISMSPCLDYITGNSSRPSSSCCSELSNTVKSQPQCLCEVIKGGGSSASSLGINVNQTQAMALPSACNVQTPPVSRCNAASPNSPSGNGSKTVPSTNRVDSSNATKLTFSLLFFWLFVASYTSSFSAV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	159	2.2.26 [Sep-21-2011]
Q9ZQI8	169	Non-specific lipid-transf	no	no	0.924	0.869	0.283	6e-16
Q8VYI9	182	Non-specific lipid-transf	no	no	0.522	0.456	0.370	1e-12
Q9FFY3	151	Lipid transfer-like prote	no	no	0.685	0.721	0.327	1e-08
Q9C7F7	193	Uncharacterized GPI-ancho	no	no	0.773	0.637	0.287	1e-08
Q6ASY2	178	Non-specific lipid transf	no	no	0.654	0.584	0.336	7e-07
Q9ZVC7	176	Xylogen-like protein 11 O	no	no	0.484	0.437	0.345	3e-06
Q43767	115	Non-specific lipid-transf	N/A	no	0.566	0.782	0.333	2e-05
P07597	117	Non-specific lipid-transf	N/A	no	0.610	0.829	0.317	5e-05
Q42842	115	Non-specific lipid-transf	N/A	no	0.566	0.782	0.333	0.0001
Q43875	115	Non-specific lipid-transf	N/A	no	0.566	0.782	0.333	0.0001

>sp|Q9ZQI8|NLTL2_ARATH Non-specific lipid-transfer protein-like protein At2g13820 OS=Arabidopsis thaliana GN=At2g13820 PE=1 SV=1

 Score = 83.2 bits (204), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 88/173 (50%), Gaps = 26/173 (15%)

Query: 1   MRLQTVLIAVIVAAAFCGGDVAAQSSDCNNVLISMSPCLDYITGNSS--RPSSSCCSELS 58
           M   T+L+ +    A   G+ A  + DC++++++M+ CL ++T  S+  +P  +CCS L 
Sbjct: 1   MAYATILM-IFSVVALMSGERAHAAVDCSSLILNMADCLSFVTSGSTVVKPEGTCCSGLK 59

Query: 59  NTVKSQPQCLCEVIKGGGSSASSLGINVNQTQAMALPSACNVQTPPVSRC---------- 108
             V++ P+CLCE  K  G    SLG+ ++ ++A +LPS C V  PP +RC          
Sbjct: 60  TVVRTGPECLCEAFKNSG----SLGLTLDLSKAASLPSVCKVAAPPSARCGLSVSGDPPA 115

Query: 109 ---------NAASPNSPSGNGSKTVPSTNRVDSSNATKLTFSLLFFWLFVASY 152
                     A +P   SG  + T  S+ R   ++   ++F+ + F   ++S+
Sbjct: 116 TAPGLSPTAGAGAPALSSGANAATPVSSPRSSDASLLSVSFAFVIFMALISSF 168

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VYI9|NLTL5_ARATH Non-specific lipid-transfer protein-like protein At5g64080 OS=Arabidopsis thaliana GN=At5g64080 PE=1 SV=1

 Score = 72.4 bits (176), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 56/89 (62%), Gaps = 6/89 (6%)

Query: 23  AQSSDCNNVLISMSPCLDYIT--GNSSRPSSSCCSELSNTVKSQPQCLCEVIKGGGSSAS 80
           A S DC+ ++++M+ CL +++  G  ++P  +CCS L   +K+  QCLCE  K    S++
Sbjct: 38  APSVDCSTLILNMADCLSFVSSGGTVAKPEGTCCSGLKTVLKADSQCLCEAFK----SSA 93

Query: 81  SLGINVNQTQAMALPSACNVQTPPVSRCN 109
           SLG+ +N T+A  LP+AC +  P ++ C 
Sbjct: 94  SLGVTLNITKASTLPAACKLHAPSIATCG 122

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FFY3|VAS_ARATH Lipid transfer-like protein VAS OS=Arabidopsis thaliana GN=VAS PE=2 SV=1

 Score = 59.3 bits (142), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 60/119 (50%), Gaps = 10/119 (8%)

Query: 1   MRLQTVLIAVIVAAAFCGGDVAAQSSDCNNVLISMSPCLDYITGNSSRPSSSCCSELSNT 60
           M+  +  + +++ AA  G  +  QS  C N L   +PCL+Y+ G    P   CC+ L + 
Sbjct: 5   MKFFSFYVVLLLVAASSGMRINGQSVSCLNQL---APCLNYLNGTKEVPQV-CCNPLKSV 60

Query: 61  VKSQPQCLCEVIKGGGSS-ASSLGINVNQTQAMALPSACNVQTPPV---SRCNAASPNS 115
           +++ P+CLC +I    SS A   GI+VN  Q   LP+ C     P+   +R    S NS
Sbjct: 61  IRNNPECLCRMISNRWSSQAERAGIDVNDAQ--MLPARCGEHVNPIACLTRSRGGSTNS 117

Promotes the number of phloem (pro)cambial and pericycle cells.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C7F7|UGPI5_ARATH Uncharacterized GPI-anchored protein At1g27950 OS=Arabidopsis thaliana GN=At1g27950 PE=1 SV=1

 Score = 59.3 bits (142), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 66/139 (47%), Gaps = 16/139 (11%)

Query: 1   MRLQTVLIAVIVAAAFCGGDVAAQS----SDCNNVLISMSPCLDYITGNSSRPSSSCCSE 56
           + L  VL+ + + A+      AA       +CN     ++ CLD+ TG ++ PS  CC  
Sbjct: 4   LHLHLVLVTMTIVASIAAAAPAAPGGALADECNQDFQKVTLCLDFATGKATIPSKKCCDA 63

Query: 57  LSNTVKSQPQCLCEVI---KGGGSSASSLGINVNQTQAMALPSACNVQTPPVSRCN---A 110
           + +  +  P+CLC VI   K GG +   LG  V + + + LP++C +    ++ C     
Sbjct: 64  VEDIKERDPKCLCFVIQQAKTGGQALKDLG--VQEDKLIQLPTSCQLHNASITNCPKLLG 121

Query: 111 ASPNSPSG----NGSKTVP 125
            SP+SP      N + T P
Sbjct: 122 ISPSSPDAAVFTNNATTTP 140

Arabidopsis thaliana (taxid: 3702)

>sp|Q6ASY2|NLTL1_ORYSJ Non-specific lipid transfer protein-like 1 OS=Oryza sativa subsp. japonica GN=LTPL1 PE=1 SV=1

 Score = 53.1 bits (126), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 41/122 (33%), Positives = 59/122 (48%), Gaps = 18/122 (14%)

Query: 8   IAVIVAAAFCGGDVAAQSS-------DCNNVLISMSPCLDYITGNS---SRPSSSCCSEL 57
           + V+  AA  G D A  SS       DC    + ++ CLDY+T      SRPS  CC E+
Sbjct: 13  LLVVGLAAVAGVDGATASSPAPAPAVDCTAEALKLADCLDYVTPGKTAPSRPSKLCCGEV 72

Query: 58  SNTVKSQPQ--CLCEVIKGGGSSASSLGINVNQTQAMALPSACNVQTPPVSRCNAASPNS 115
              +K      CLC        ++ +L + +N T+A+ LP+AC       S+C A +P S
Sbjct: 73  KGALKDSAAVGCLCAAF-----TSKTLPLPINITRALHLPAACGADASAFSKCLAPAP-S 126

Query: 116 PS 117
           PS
Sbjct: 127 PS 128

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9ZVC7|XYP11_ARATH Xylogen-like protein 11 OS=Arabidopsis thaliana GN=XYP11 PE=1 SV=2

 Score = 51.2 bits (121), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 7/84 (8%)

Query: 30  NVLISM---SPCLDYIT--GNSSRPSSSCCSELSNTVKSQPQCLCEVIKGGGSSASSLGI 84
           N L+SM   S C  Y+    N  +P ++CC EL+  V+S P+C+C +  GG S     G+
Sbjct: 39  NCLVSMLNVSDCFSYVQVGSNEIKPEAACCPELAGMVQSSPECVCNLYGGGAS--PRFGV 96

Query: 85  NVNQTQAMALPSACNVQTPPVSRC 108
            +++ +A  L + C V+ P  S C
Sbjct: 97  KLDKQRAEQLSTICGVKAPSPSLC 120

Arabidopsis thaliana (taxid: 3702)

>sp|Q43767|NLT41_HORVU Non-specific lipid-transfer protein 4.1 OS=Hordeum vulgare GN=LTP4.1 PE=1 SV=1

 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 51/105 (48%), Gaps = 15/105 (14%)

Query: 4   QTVLIAVIVAAAFCGGDVAAQSSDCNNVLISMSPCLDYITGNSSRPSSSCCS---ELSNT 60
           Q VL+A++ A      D A     C  V  ++SPC+ Y  GN ++P ++CCS    L+  
Sbjct: 8   QLVLVALVAAMLLVAADAAI---SCGQVSSALSPCISYARGNGAKPPAACCSGVKRLAGA 64

Query: 61  VKS--QPQCLCEVIKGGGSSASSLGINVNQTQAMALPSACNVQTP 103
            +S    Q  C+ IK   S+A  L    N  +A  +PS C V  P
Sbjct: 65  AQSTADKQAACKCIK---SAAGGL----NAGKAAGIPSMCGVSVP 102

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.

Hordeum vulgare (taxid: 4513)

>sp|P07597|NLTP1_HORVU Non-specific lipid-transfer protein 1 OS=Hordeum vulgare GN=LTP1 PE=1 SV=1

 Score = 47.0 bits (110), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 49/107 (45%), Gaps = 10/107 (9%)

Query: 2   RLQTVLIAVIVAAAFCGGDVAAQSSDCNNVLISMSPCLDYITGNSSRPSSSCCS---ELS 58
           R Q +L+A  +         AA + +C  V   M PCL Y+ G    PS  CC+   +L 
Sbjct: 3   RAQVLLMAAALVLMLTAAPRAAVALNCGQVDSKMKPCLTYVQGGPG-PSGECCNGVRDLH 61

Query: 59  NTVKS--QPQCLCEVIKGGGSSASSLGINVNQTQAMALPSACNVQTP 103
           N  +S    Q +C  +KG      +L +N     A ++PS CNV  P
Sbjct: 62  NQAQSSGDRQTVCNCLKGIARGIHNLNLN----NAASIPSKCNVNVP 104

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.

Hordeum vulgare (taxid: 4513)

>sp|Q42842|NLT43_HORVU Non-specific lipid-transfer protein 4.3 OS=Hordeum vulgare GN=LTP4.3 PE=2 SV=1

 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 50/105 (47%), Gaps = 15/105 (14%)

Query: 4   QTVLIAVIVAAAFCGGDVAAQSSDCNNVLISMSPCLDYITGNSSRPSSSCCS---ELSNT 60
           Q VL+A++ A      D A     C  V  ++SPC+ Y  GN ++P  +CCS    L+  
Sbjct: 8   QLVLVAMVAAMLLVATDAAI---SCGQVSSALSPCISYARGNGAKPPVACCSGVKRLAGA 64

Query: 61  VKS--QPQCLCEVIKGGGSSASSLGINVNQTQAMALPSACNVQTP 103
            +S    Q  C+ IK   S+A  L    N  +A  +PS C V  P
Sbjct: 65  AQSTADKQAACKCIK---SAAGGL----NAGKAAGIPSMCGVSVP 102

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.

Hordeum vulgare (taxid: 4513)

>sp|Q43875|NLT42_HORVU Non-specific lipid-transfer protein 4.2 OS=Hordeum vulgare GN=LTP4.2 PE=2 SV=1

 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 50/105 (47%), Gaps = 15/105 (14%)

Query: 4   QTVLIAVIVAAAFCGGDVAAQSSDCNNVLISMSPCLDYITGNSSRPSSSCCS---ELSNT 60
           Q VL+A++ A      D A     C  V  ++SPC+ Y  GN ++P  +CCS    L+  
Sbjct: 8   QLVLVAMVAAMLIVATDAAI---SCGQVSSALSPCISYARGNGAKPPVACCSGVKRLAGA 64

Query: 61  VKS--QPQCLCEVIKGGGSSASSLGINVNQTQAMALPSACNVQTP 103
            +S    Q  C+ IK   S+A  L    N  +A  +PS C V  P
Sbjct: 65  AQSTADKQAACKCIK---SAAGGL----NAGKAAGIPSMCGVSVP 102

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.

Hordeum vulgare (taxid: 4513)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	159
255567562	170	lipid binding protein, putative [Ricinus	0.955	0.894	0.615	4e-41
359479639	163	PREDICTED: non-specific lipid-transfer p	0.949	0.926	0.578	2e-40
224085499	166	predicted protein [Populus trichocarpa]	0.955	0.915	0.607	2e-39
449432688	169	PREDICTED: non-specific lipid-transfer p	0.937	0.881	0.559	3e-39
449513419	169	PREDICTED: non-specific lipid-transfer p	0.937	0.881	0.559	3e-39
388510816	159	unknown [Lotus japonicus]	0.899	0.899	0.589	2e-38
359477539	171	PREDICTED: non-specific lipid-transfer p	0.911	0.847	0.567	2e-37
224062420	166	predicted protein [Populus trichocarpa]	0.968	0.927	0.562	6e-37
297737079	153	unnamed protein product [Vitis vinifera]	0.836	0.869	0.613	2e-36
388517463	169	unknown [Lotus japonicus]	0.930	0.875	0.552	2e-36

>gi|255567562|ref|XP_002524760.1| lipid binding protein, putative [Ricinus communis] gi|223535944|gb|EEF37603.1| lipid binding protein, putative [Ricinus communis]

 Score =  172 bits (436), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 104/169 (61%), Positives = 123/169 (72%), Gaps = 17/169 (10%)

Query: 2   RLQTVLIAVIVAAAFCGGDVAAQSSDCNNVLISMSPCLDYITGNSSRPSSSCCSELSNTV 61
           R++ +LI   VAA +C G V AQSS C NVLISMSPCL+YITGNSS PSS CC++L++ V
Sbjct: 5   RMEIILITFAVAATWCAGGVKAQSSSCTNVLISMSPCLNYITGNSSTPSSQCCTQLASVV 64

Query: 62  KSQPQCLCEVIKGGGSSASSLGINVNQTQAMALPSACNVQTPPVSRCNA----------A 111
           +SQPQCLCEV+ GG   ASSLGINVNQTQA+ALP+ CNVQTPP+SRC             
Sbjct: 65  RSQPQCLCEVLNGG---ASSLGINVNQTQALALPTTCNVQTPPISRCGGTASSPADSPSG 121

Query: 112 SPNSPS-GN-GSKTVPST-NRVDSSNATKLTFS-LLFFWLFVASYTSSF 156
           +P+SPS GN GSKTVP+T N     N+TK T S   FF LFVASY S+F
Sbjct: 122 TPDSPSTGNGGSKTVPTTDNGTSDGNSTKSTSSFFFFFLLFVASYASAF 170

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359479639|ref|XP_003632312.1| PREDICTED: non-specific lipid-transfer protein-like protein At2g13820-like [Vitis vinifera] gi|296085218|emb|CBI28713.3| unnamed protein product [Vitis vinifera]

 Score =  170 bits (431), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 96/166 (57%), Positives = 126/166 (75%), Gaps = 15/166 (9%)

Query: 2   RLQTVLIAVIVAAAFCGGDVAAQSSDCNNVLISMSPCLDYITGNSSRPSSSCCSELSNTV 61
           R++TVL  ++VA+ + G   A   S C NV+ISMSPCL+YITGNSS PSS CC++L++ V
Sbjct: 5   RMETVLTMILVASLWAG---AMAQSSCTNVIISMSPCLNYITGNSSTPSSGCCTQLASVV 61

Query: 62  KSQPQCLCEVIKGGGSSASSLGINVNQTQAMALPSACNVQTPPVSRCNAASP-NSP---- 116
           +SQPQCLCEV+ GGG   SSLGI +NQTQA+ALP+AC+VQTPP+SRCNA+SP +SP    
Sbjct: 62  RSQPQCLCEVLNGGG---SSLGIQINQTQALALPTACSVQTPPISRCNASSPADSPAGTP 118

Query: 117 -SGNGSKTVPSTNRVDSSNAT--KLTFSLLFFWLFVASYTSSFSAV 159
            SG+ SKTVP+TN  DSS+ T  K  FSL  F +F AS  ++F+++
Sbjct: 119 NSGSRSKTVPATNG-DSSDGTSIKSPFSLTSFLVFFASCAATFTSI 163

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224085499|ref|XP_002307596.1| predicted protein [Populus trichocarpa] gi|222857045|gb|EEE94592.1| predicted protein [Populus trichocarpa]

 Score =  166 bits (421), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 102/168 (60%), Positives = 122/168 (72%), Gaps = 16/168 (9%)

Query: 2   RLQTVLIAVIVAAAFCGGDVAAQSSDCNNVLISMSPCLDYITGNSSRPSSSCCSELSNTV 61
           R++ +L    +A  + G   A   S C NV+ISMSPCL+YITGNSS PSSSCC++L+N V
Sbjct: 5   RMEVMLTISFIATLWAG---AMAQSSCTNVIISMSPCLNYITGNSSTPSSSCCTQLANVV 61

Query: 62  KSQPQCLCEVIKGGGSSASSLGINVNQTQAMALPSACNVQTPPVSRCNAAS--------P 113
           KSQPQCLCEV+ GG   ASSLG+NVNQTQA+ALPSACNVQTP +SRCNA+S        P
Sbjct: 62  KSQPQCLCEVVNGG---ASSLGVNVNQTQALALPSACNVQTPSISRCNASSPTDSPAGTP 118

Query: 114 NSPS-GNGSKTVPST-NRVDSSNATKLTFSLLFFWLFVASYTSSFSAV 159
           NSPS G GSKTVPST N    +N+TKLT SLLFF LF+ S  S+   +
Sbjct: 119 NSPSAGTGSKTVPSTDNGTSDANSTKLTMSLLFFLLFITSQASTLGTI 166

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432688|ref|XP_004134131.1| PREDICTED: non-specific lipid-transfer protein-like protein At2g13820-like [Cucumis sativus]

 Score =  166 bits (420), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 94/168 (55%), Positives = 114/168 (67%), Gaps = 19/168 (11%)

Query: 2   RLQTVLIAVIVAAAFCGGDVAAQSSDCNNVLISMSPCLDYITGNSSRPSSSCCSELSNTV 61
           R+   L+AVIVA  + G   AA  SDC NVLISM+PCL+YITGNSS PS SCC++LSN V
Sbjct: 5   RMVVGLVAVIVAVHWAG---AAAQSDCTNVLISMAPCLNYITGNSSTPSQSCCTQLSNVV 61

Query: 62  KSQPQCLCEVIKGGGSSASSLGINVNQTQAMALPSACNVQTPPVSRCNAASP-------- 113
           +S PQCLC+V+ GGG   SSLG+N+NQTQA+ALP ACNVQTP VS CN  SP        
Sbjct: 62  RSNPQCLCQVLNGGG---SSLGVNINQTQALALPQACNVQTPSVSSCNVDSPAGSPAGAP 118

Query: 114 ----NSPSGNGSKTVPSTNRVDSSNAT-KLTFSLLFFWLFVASYTSSF 156
               N PSG GSKTVPST+   S  ++  ++  LLF  L  + Y S+F
Sbjct: 119 DSSNNVPSGTGSKTVPSTDNGSSDGSSIHMSKPLLFSILLASIYASAF 166

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449513419|ref|XP_004164321.1| PREDICTED: non-specific lipid-transfer protein-like protein At2g13820-like [Cucumis sativus]

 Score =  166 bits (420), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 94/168 (55%), Positives = 114/168 (67%), Gaps = 19/168 (11%)

Query: 2   RLQTVLIAVIVAAAFCGGDVAAQSSDCNNVLISMSPCLDYITGNSSRPSSSCCSELSNTV 61
           R+   L+AVIVA  + G   AA  SDC NVLISM+PCL+YITGNSS PS SCC++LSN V
Sbjct: 5   RMVVGLVAVIVAVHWAG---AAAQSDCTNVLISMAPCLNYITGNSSTPSQSCCTQLSNVV 61

Query: 62  KSQPQCLCEVIKGGGSSASSLGINVNQTQAMALPSACNVQTPPVSRCNAASP-------- 113
           +S PQCLC+V+ GGG   SSLG+N+NQTQA+ALP ACNVQTP VS CN  SP        
Sbjct: 62  RSNPQCLCQVLNGGG---SSLGVNINQTQALALPQACNVQTPSVSSCNVDSPADSPAGAP 118

Query: 114 ----NSPSGNGSKTVPSTNRVDSSNAT-KLTFSLLFFWLFVASYTSSF 156
               N PSG GSKTVPST+   S  ++  ++  LLF  L  + Y S+F
Sbjct: 119 DSSNNVPSGTGSKTVPSTDNGSSDGSSIHMSKPLLFSILLASIYASAF 166

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388510816|gb|AFK43474.1| unknown [Lotus japonicus]

 Score =  163 bits (413), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 92/156 (58%), Positives = 118/156 (75%), Gaps = 13/156 (8%)

Query: 8   IAVIVAAAFCGGDVAAQSSDCNNVLISMSPCLDYITGNSSRPSSSCCSELSNTVKSQPQC 67
           + ++V A  C G  AA  S C +VL+++SPCL+YITGNSS PSS CCS+L++ V+SQPQC
Sbjct: 10  LVLVVIAILCVG--AAAQSSCTSVLVNLSPCLNYITGNSSTPSSGCCSQLASVVRSQPQC 67

Query: 68  LCEVIKGGGSSASSLGINVNQTQAMALPSACNVQTPPVSRCNAA-----SPNS-PSGNGS 121
           LC+V+ GGG   SSLGI++NQTQA+ALPSACNVQTPP S+CNAA     SPNS PSG GS
Sbjct: 68  LCQVLNGGG---SSLGISINQTQALALPSACNVQTPPTSQCNAAATPADSPNSDPSGTGS 124

Query: 122 KTVPSTNRVDSS-NATKLTFSLLFFWLFVASYTSSF 156
           +TVP+ +   SS N+ KL+  LLF  +F A+Y S+F
Sbjct: 125 RTVPTPDDGSSSGNSIKLSIPLLFI-VFAATYASTF 159

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359477539|ref|XP_002282896.2| PREDICTED: non-specific lipid-transfer protein-like protein At2g13820-like [Vitis vinifera]

 Score =  160 bits (405), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 93/164 (56%), Positives = 114/164 (69%), Gaps = 19/164 (11%)

Query: 10  VIVAAAFCGGDVAAQSSDCNNVLISMSPCLDYITGNSSRPSSSCCSELSNTVKSQPQCLC 69
           V+VA        AAQSS C +V+ISMSPCL+YI+GNSS PSS CC++L++ V+SQPQCLC
Sbjct: 11  VLVAVTMLWPGTAAQSS-CTSVIISMSPCLNYISGNSSTPSSGCCTQLASVVRSQPQCLC 69

Query: 70  EVIKGGGSSASSLGINVNQTQAMALPSACNVQTPPVSRCNA-------------ASPNS- 115
           EV+ GGG   SS+GIN+NQTQA+ALP ACNVQTPP+SRCN               SP + 
Sbjct: 70  EVLNGGG---SSVGININQTQALALPGACNVQTPPLSRCNGNAASPADSPAAMPESPTTV 126

Query: 116 PSGNGSKTVPST-NRVDSSNATKLTFSLLFFWLFVASYTSSFSA 158
           PS  GSKTVPST N   + ++TK + SLLF  L  ASY S+F A
Sbjct: 127 PSDGGSKTVPSTDNGTSNGSSTKSSMSLLFILLIAASYASTFIA 170

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224062420|ref|XP_002300831.1| predicted protein [Populus trichocarpa] gi|222842557|gb|EEE80104.1| predicted protein [Populus trichocarpa]

 Score =  158 bits (400), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 95/169 (56%), Positives = 117/169 (69%), Gaps = 15/169 (8%)

Query: 1   MRLQTVLIAVIVAAAFCGGDVAAQSSDCNNVLISMSPCLDYITGNSSRPSSSCCSELSNT 60
           +R   V+ A+ +      G  A   S C NV+ISMSPCL+YITGNSS PSSSCC++L+N 
Sbjct: 3   VRGMEVMFAIALIGTLWAG--AKAQSSCTNVIISMSPCLNYITGNSSTPSSSCCTQLANV 60

Query: 61  VKSQPQCLCEVIKGGGSSASSLGINVNQTQAMALPSACNVQTPPVSRCNAASPNS----- 115
           VKSQPQCLCEV+ GG   ASSLG+NVNQTQA+ALP ACNV+TP + RCNA+SP       
Sbjct: 61  VKSQPQCLCEVVNGG---ASSLGVNVNQTQALALPGACNVRTPSIGRCNASSPTDSPSGT 117

Query: 116 ----PSGNGSKTVPST-NRVDSSNATKLTFSLLFFWLFVASYTSSFSAV 159
               P+G+GSKTVPST N    +N+TKL  S LFF LF+ SY S+   +
Sbjct: 118 PNSPPTGSGSKTVPSTDNGTSDANSTKLAMSRLFFLLFITSYASTLVTI 166

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297737079|emb|CBI26280.3| unnamed protein product [Vitis vinifera]

 Score =  157 bits (396), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 92/150 (61%), Positives = 112/150 (74%), Gaps = 17/150 (11%)

Query: 22  AAQSSDCNNVLISMSPCLDYITGNSSRPSSSCCSELSNTVKSQPQCLCEVIKGGGSSASS 81
           AAQSS C +V+ISMSPCL+YI+GNSS PSS CC++L++ V+SQPQCLCEV+ GGG   SS
Sbjct: 7   AAQSS-CTSVIISMSPCLNYISGNSSTPSSGCCTQLASVVRSQPQCLCEVLNGGG---SS 62

Query: 82  LGINVNQTQAMALPSACNVQTPPVSRCNAA-----------SPNS-PSGNGSKTVPST-N 128
           +GIN+NQTQA+ALP ACNVQTPP+SRCNAA           SP + PS  GSKTVPST N
Sbjct: 63  VGININQTQALALPGACNVQTPPLSRCNAASPADSPAAMPESPTTVPSDGGSKTVPSTDN 122

Query: 129 RVDSSNATKLTFSLLFFWLFVASYTSSFSA 158
              + ++TK + SLLF  L  ASY S+F A
Sbjct: 123 GTSNGSSTKSSMSLLFILLIAASYASTFIA 152

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388517463|gb|AFK46793.1| unknown [Lotus japonicus]

 Score =  156 bits (395), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 94/170 (55%), Positives = 116/170 (68%), Gaps = 22/170 (12%)

Query: 2   RLQTVLIAVIVAAAFCGGDVAAQSSDCNNVLISMSPCLDYITGNSSRPSSSCCSELSNTV 61
           R   + + ++V A  C G VAAQSS C NVL+S+SPCL+YITGNSS PSS CCS+L+  V
Sbjct: 4   RKMNMGLILVVMAMLCAG-VAAQSS-CANVLVSLSPCLNYITGNSSTPSSGCCSQLAAVV 61

Query: 62  KSQPQCLCEVIKGGGSSASSLGINVNQTQAMALPSACNVQTPPVSRCN------------ 109
           +SQPQCLC+V+ GG   ASSLGIN+NQTQA+ALP AC VQTPP S+CN            
Sbjct: 62  RSQPQCLCQVLGGG---ASSLGININQTQALALPGACKVQTPPTSQCNTAATPANSPEEP 118

Query: 110 -AASPNS-PSGNGSKTVPSTNRVDSS-NATKLTFSLLFFWLFVASYTSSF 156
            A SPNS PSG GSK+ P+T    SS N+ KL+  LL   +  A+Y S+F
Sbjct: 119 AAESPNSGPSGTGSKSTPTTGDGSSSGNSIKLSIPLLL--VLAATYASTF 166

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	159
TAIR|locus:2077001	170	AT3G22600 [Arabidopsis thalian	0.962	0.9	0.450	1.2e-28
TAIR|locus:505006466	156	AT4G14815 [Arabidopsis thalian	0.792	0.807	0.518	3.5e-27
TAIR|locus:2039366	183	AT2G48130 [Arabidopsis thalian	0.761	0.661	0.370	1.5e-19
TAIR|locus:1006230669	171	AT1G03103 "AT1G03103" [Arabido	0.735	0.684	0.357	9.8e-16
TAIR|locus:2043750	169	XYP2 "xylogen protein 2" [Arab	0.817	0.769	0.297	7.1e-13
TAIR|locus:2184817	158	AT5G09370 [Arabidopsis thalian	0.597	0.601	0.349	2.4e-12
TAIR|locus:2035711	227	AT1G55260 [Arabidopsis thalian	0.842	0.590	0.242	5.8e-11
TAIR|locus:2164411	182	XYP1 "xylogen protein 1" [Arab	0.654	0.571	0.297	7.4e-11
TAIR|locus:2050482	205	AT2G44290 [Arabidopsis thalian	0.666	0.517	0.307	9.4e-11
TAIR|locus:2138586	208	AT4G08670 [Arabidopsis thalian	0.679	0.519	0.352	1.5e-10

TAIR|locus:2077001 AT3G22600 [Arabidopsis thaliana (taxid:3702)]

 Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
 Identities = 78/173 (45%), Positives = 95/173 (54%)

Query:     1 MRLQTVLIAVIVAAAFCGGDVAAQSSDCNNVLISMSPCLDYITGNXXXXXXXXXXXXXNT 60
             M+++  L+ + V  A     + +  S C N LISMSPCL+YITGN               
Sbjct:     1 MKMEMGLVFLTVFMAVMSSTMVSAQSSCTNALISMSPCLNYITGNSTSPNQQCCNQLSRV 60

Query:    61 VKSQPQCLCEVIKGGGSSASSLGINVNQTQAMALPSACNVQTPPVSRCN----------- 109
             V+S P CLC+V+ GGGS    LGINVNQTQA+ LP ACNVQTPPVSRCN           
Sbjct:    61 VQSSPDCLCQVLNGGGSQ---LGINVNQTQALGLPRACNVQTPPVSRCNTGGGGGGSTSD 117

Query:   110 --AASPNSPS-GNGSKTVP--STNRVDSSNATKLTFSLLFFWLFVA-SYTSSF 156
               A SPNS   GNGSKTVP    +   SS+ + + FS      F A SY + F
Sbjct:   118 SPAESPNSSGPGNGSKTVPVGEGDGPPSSDGSSIKFSFPLIAFFSAVSYMAIF 170

GO:0005886 "plasma membrane" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=IEA;ISS

GO:0031225 "anchored to membrane" evidence=TAS

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:505006466 AT4G14815 [Arabidopsis thaliana (taxid:3702)]

 Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
 Identities = 70/135 (51%), Positives = 87/135 (64%)

Query:    21 VAAQSSDCNNVLISMSPCLDYITGNXXXXXXXXXXXXXNTVKSQPQCLCEVIKGGGSSAS 80
             V+AQSS C NVLISM+PCL +IT N             + V+   +CLC+V+ GGGS   
Sbjct:    20 VSAQSS-CTNVLISMAPCLSFITQNTSLPSQQCCNQLAHVVRYSSECLCQVLDGGGSQ-- 76

Query:    81 SLGINVNQTQAMALPSACNVQTPPVSRCNAASP-NSPS--GNGSKTVPSTNRVDSSNATK 137
              LGINVN+TQA+ALP AC+V+TPP SRC++ S  NS S  GNGSKTVP   +  S  + K
Sbjct:    77 -LGINVNETQALALPKACHVETPPASRCHSGSSVNSHSEHGNGSKTVPR-EKSSSDGSIK 134

Query:   138 LTFSLLFFWLFVASY 152
              +F LL   LF ASY
Sbjct:   135 FSFPLLAI-LFTASY 148

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=IEA;ISS

GO:0031225 "anchored to membrane" evidence=TAS

TAIR|locus:2039366 AT2G48130 [Arabidopsis thaliana (taxid:3702)]

 Score = 233 (87.1 bits), Expect = 1.5e-19, P = 1.5e-19
 Identities = 47/127 (37%), Positives = 73/127 (57%)

Query:    10 VIVAAAFCGGDVAAQSSDCNNVLISMSPCLDYITGNXXXXXXXXXXXXXNTVKSQPQCLC 69
             V + AA      A  SS C + L ++SPCL YITGN             + +KS PQC+C
Sbjct:    12 VALVAALWSVTKAQPSSSCVSTLTTLSPCLSYITGNSTTPSQPCCSRLDSVIKSSPQCIC 71

Query:    70 EVIKGGGSSASSLGINVNQTQAMALPSACNVQTPPVSRCNAAS-PNS--PSGNGSKTVPS 126
               +    S   ++G+N+N+TQA+ LP+ACN+QTPP+++CNAA+ P +  P+ + ++  P 
Sbjct:    72 SAVN---SPIPNIGLNINRTQALQLPNACNIQTPPLTQCNAATGPTAQPPAPSPTEKTPD 128

Query:   127 TNRVDSS 133
                  +S
Sbjct:   129 VTLTPTS 135

GO:0005886 "plasma membrane" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=IEA;ISS

GO:0031225 "anchored to membrane" evidence=TAS

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:1006230669 AT1G03103 "AT1G03103" [Arabidopsis thaliana (taxid:3702)]

 Score = 197 (74.4 bits), Expect = 9.8e-16, P = 9.8e-16
 Identities = 45/126 (35%), Positives = 62/126 (49%)

Query:     7 LIAVIVAAAFCGGDVAAQSSDCNNVLISMSPCLDYITGNXXXXXXXXXXXXXNTVKSQPQ 66
             ++A+++A    GG    Q+  C + L S+SPCL Y+ G                V+S P+
Sbjct:     5 ILALVIATFLYGGATTVQAG-CRDTLTSLSPCLYYLNGGSSSPSWSCCRQFSTVVQSSPE 63

Query:    67 CLCEVIKGGGSSASSLGINVNQTQAMALPSACNVQTPPVSRCNAASPNSPSGNGSKTVPS 126
             CLC V+    SS    G   N+T A+ LP+ACNVQTP  S CN        GN   T+P+
Sbjct:    64 CLCSVVNSNESSF--YGFKFNRTLALNLPTACNVQTPSPSLCNTG------GNVPTTLPA 115

Query:   127 TNRVDS 132
                V S
Sbjct:   116 NTPVGS 121

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2043750 XYP2 "xylogen protein 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
 Identities = 42/141 (29%), Positives = 71/141 (50%)

Query:     1 MRLQTVLIAVIVAAAFCGGDVAAQSSDCNNVLISMSPCLDYIT-GNXXXXXXXXXXXXXN 59
             M   T+L+ +    A   G+ A  + DC++++++M+ CL ++T G+              
Sbjct:     1 MAYATILM-IFSVVALMSGERAHAAVDCSSLILNMADCLSFVTSGSTVVKPEGTCCSGLK 59

Query:    60 TV-KSQPQCLCEVIKGGGSSASSLGINVNQTQAMALPSACNVQTPPVSRCNAASPNSPSG 118
             TV ++ P+CLCE  K  GS    LG+ ++ ++A +LPS C V  PP +RC      S SG
Sbjct:    60 TVVRTGPECLCEAFKNSGS----LGLTLDLSKAASLPSVCKVAAPPSARCGL----SVSG 111

Query:   119 NGSKTVPSTNRVDSSNATKLT 139
             +   T P  +    + A  L+
Sbjct:   112 DPPATAPGLSPTAGAGAPALS 132

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=IEA;ISS

GO:0046658 "anchored to plasma membrane" evidence=IDA

GO:0006084 "acetyl-CoA metabolic process" evidence=RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

TAIR|locus:2184817 AT5G09370 [Arabidopsis thaliana (taxid:3702)]

 Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
 Identities = 36/103 (34%), Positives = 56/103 (54%)

Query:    25 SSDCNNVLISMSPCLDYIT--GNXXXXXXXXXXXXXNTVKSQPQCLCEVIKGGGSSASSL 82
             +SDC+ ++I++ PCL +I+  G              N + ++P CLCE +K      + L
Sbjct:    25 ASDCDTLVITLFPCLPFISIGGTADTPTASCCSSLKNILDTKPICLCEGLK-----KAPL 79

Query:    83 GINVNQTQAMALPSACNVQTPPVSRCNAASPNSP-SGNGSKTV 124
             GI +N T++  LP AC +  PPVS C++  P SP + NG   V
Sbjct:    80 GIKLNVTKSATLPVACKLNAPPVSACDSLPPASPPTANGQAPV 122

GO:0005886 "plasma membrane" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=IEA;ISS

GO:0031225 "anchored to membrane" evidence=TAS

TAIR|locus:2035711 AT1G55260 [Arabidopsis thaliana (taxid:3702)]

 Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
 Identities = 34/140 (24%), Positives = 65/140 (46%)

Query:     4 QTVLIAVIVAAAFCG---GDVAAQSSDCNNVLISMSPCLDYITGNXXXXXXXXXXXXXNT 60
             +T+ I +++ +   G    D+A    +C N LI +S C+ Y+ G+               
Sbjct:    49 RTLFITIVITSMLLGFGNSDLAQDREECTNQLIELSTCIPYVGGDAKAPTKDCCAGFGQV 108

Query:    61 VKSQPQCLCEVIKGGGSSASSLGINVNQTQAMALPSACNVQTPPVSRCNAASPNSPSGNG 120
             ++   +C+C +++        LGI +N T A  LPSAC++  P ++ C +      +   
Sbjct:   109 IRKSEKCVCILVRD--KDDPQLGIKINATLAAHLPSACHITAPNITDCISILHLPRNSTL 166

Query:   121 SKTVPSTNRV-DSSNATKLT 139
             +K   +  R+ D+ N+T  T
Sbjct:   167 AKEFENLGRIEDNYNSTSPT 186

GO:0005886 "plasma membrane" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=ISS

GO:0031225 "anchored to membrane" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0000038 "very long-chain fatty acid metabolic process" evidence=RCA

GO:0009664 "plant-type cell wall organization" evidence=RCA

GO:0009832 "plant-type cell wall biogenesis" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0042335 "cuticle development" evidence=RCA

GO:0042546 "cell wall biogenesis" evidence=RCA

TAIR|locus:2164411 XYP1 "xylogen protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
 Identities = 33/111 (29%), Positives = 59/111 (53%)

Query:    11 IVAAAFCGGDVAAQSSDCNNVLISMSPCLDYIT-GNXXXXXXXXXXXXXNTV-KSQPQCL 68
             ++ A+       A S DC+ ++++M+ CL +++ G               TV K+  QCL
Sbjct:    26 VLGASHHHATAPAPSVDCSTLILNMADCLSFVSSGGTVAKPEGTCCSGLKTVLKADSQCL 85

Query:    69 CEVIKGGGSSASSLGINVNQTQAMALPSACNVQTPPVSRCN-AASPNSPSG 118
             CE  K    S++SLG+ +N T+A  LP+AC +  P ++ C  + +P++  G
Sbjct:    86 CEAFK----SSASLGVTLNITKASTLPAACKLHAPSIATCGLSVAPSTAPG 132

GO:0005886 "plasma membrane" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=IEA;ISS

GO:0031225 "anchored to membrane" evidence=TAS

GO:0046658 "anchored to plasma membrane" evidence=IDA

TAIR|locus:2050482 AT2G44290 [Arabidopsis thaliana (taxid:3702)]

 Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
 Identities = 35/114 (30%), Positives = 55/114 (48%)

Query:     6 VLIAVIVAAAFCGGDVAAQSSDCNNVLISMSPCLDYITGNXXXXXXXXXXXXXNTVKSQP 65
             +++A++V AA  G D      +C   L+ M+ CL Y+ G                + S  
Sbjct:    16 IMVAMVVDAA--GADKGKDKEECTAQLVGMATCLPYVQGKAKSPTPDCCSGLKQVINSDM 73

Query:    66 QCLCEVIKGGGSSASSLGINVNQTQAMALPSACNVQTPPVSRCNAA---SPNSP 116
             +CLC +I+        LG+ VN + A+ALPS C+  T  +++C A     PNSP
Sbjct:    74 KCLCMIIQERNDP--DLGLQVNVSLALALPSVCHA-TADITKCPALLHLDPNSP 124

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=IEA;ISS

GO:0031225 "anchored to membrane" evidence=TAS

TAIR|locus:2138586 AT4G08670 [Arabidopsis thaliana (taxid:3702)]

 Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 43/122 (35%), Positives = 58/122 (47%)

Query:    25 SSDCNNVLISMSPCLDYI-TGNXXXXXXXXXXXXXNTV-KSQPQCLCEVIKGGGSSASSL 82
             SSDC+ V+ SM  CL Y+  G+              TV +  PQC+C     G  SA  +
Sbjct:    45 SSDCSTVIYSMMDCLGYLGVGSNETKPEKSCCTGIETVLQYNPQCIC----AGLVSAGEM 100

Query:    83 GINVNQTQAMALPSACNVQ-TPP---VSRCNA----ASPNSPSGNGSKTVPSTNRVDSSN 134
             GI +N T+A+A P AC +   PP   +    A    ASP SPS     T PS  +   ++
Sbjct:   101 GIELNSTRALATPKACKLSIAPPHCGIITSGATTPGASPVSPSAGAPTTSPSAAKSPETS 160

Query:   135 AT 136
             AT
Sbjct:   161 AT 162

GO:0005886 "plasma membrane" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=IEA;ISS

GO:0031225 "anchored to membrane" evidence=TAS

GO:0010584 "pollen exine formation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00023745001 SubName- Full=Chromosome chr7 scaffold_31, whole genome shotgun sequence;; Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues (By similarity) (163 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	159
cd00010	63	cd00010, AAI_LTSS, AAI_LTSS: Alpha-Amylase Inhibit	2e-19
pfam00234	74	pfam00234, Tryp_alpha_amyl, Protease inhibitor/see	3e-12
pfam14368	95	pfam14368, LTP_2, Probable lipid transfer	9e-12
smart00499	79	smart00499, AAI, Plant lipid transfer protein / se	2e-08
cd01960	89	cd01960, nsLTP1, nsLTP1: Non-specific lipid-transf	1e-07
cd01959	66	cd01959, nsLTP2, nsLTP2: Non-specific lipid-transf	0.004

>gnl|CDD|237980 cd00010, AAI_LTSS, AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins

 Score = 76.3 bits (188), Expect = 2e-19
 Identities = 31/66 (46%), Positives = 44/66 (66%), Gaps = 3/66 (4%)

Query: 35  MSPCLDYITGNSSRPSSSCCSELSNTVKSQPQCLCEVIKGGGSSASSLGINVNQTQAMAL 94
           ++PCL Y+TG ++ P S CCS L + VKS P+CLC  + G G   +SL    N T+A+AL
Sbjct: 1   LAPCLSYLTGGATAPPSDCCSGLKSVVKSDPKCLCAALNGPG---ASLLGLKNATRALAL 57

Query: 95  PSACNV 100
           P+AC +
Sbjct: 58  PAACGL 63

Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges. Length = 63

>gnl|CDD|215810 pfam00234, Tryp_alpha_amyl, Protease inhibitor/seed storage/LTP family

 Score = 58.3 bits (141), Expect = 3e-12
 Identities = 32/82 (39%), Positives = 38/82 (46%), Gaps = 9/82 (10%)

Query: 28  CNNVLISMSPCLDYITGNSSRPSSSCCSELSNTVKSQPQCLCEVIKGGGSSASSLGINVN 87
           C  VL+ ++PC  Y+ G    PS  CCS+L      Q QC C  I+     A  LGI   
Sbjct: 1   CGQVLLKLAPCAGYLQGGCQVPSQQCCSQLRQL---QAQCRCTAIR-----AIVLGIEGI 52

Query: 88  QTQAMA-LPSACNVQTPPVSRC 108
             QA A LPS C V  P    C
Sbjct: 53  NPQAAASLPSMCGVNVPYGIDC 74

This family is composed of trypsin-alpha amylase inhibitors, seed storage proteins and lipid transfer proteins from plants. Length = 74

>gnl|CDD|222713 pfam14368, LTP_2, Probable lipid transfer

 Score = 57.5 bits (139), Expect = 9e-12
 Identities = 29/98 (29%), Positives = 52/98 (53%), Gaps = 6/98 (6%)

Query: 7   LIAVIVAAAFCGGDVAAQSSDCNNVLISMSPCLDYITGNSSRPSSSCCSELSNTVKSQPQ 66
           ++AV++A+A       A ++ C + L+            ++ PS +CC+ L   VK+   
Sbjct: 1   VLAVLLASAAAAPPAPASAASCADSLLPC--LGYCYVNGTAAPSPACCAALKAAVKADVP 58

Query: 67  CLCEVIKGGGSSASSLGINVNQTQAMALPSACNVQTPP 104
           CLC+++     S  + G  +N T+A+ALP AC + +PP
Sbjct: 59  CLCDLVT----SPLAAGFGINLTRAVALPKACGLTSPP 92

The members of this family are probably involved in lipid transfer. The family has several highly conserved cysteines, paired in various ways. Length = 95

>gnl|CDD|214698 smart00499, AAI, Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family

 Score = 48.5 bits (115), Expect = 2e-08
 Identities = 27/79 (34%), Positives = 36/79 (45%), Gaps = 5/79 (6%)

Query: 28  CNNVLISMSPCLDYITGNSSR--PSSSCCSELSNTVKSQPQCLCEVIKGGGSSASSLGIN 85
           C  VL+ ++PCL Y+ G S    PS  CCS+L        QC C  ++            
Sbjct: 1   CGQVLLQLAPCLSYLVGGSRGAPPSQQCCSQLRGLN--SAQCRCLALRAAVLG-ILEIPG 57

Query: 86  VNQTQAMALPSACNVQTPP 104
           +N   A +LPSAC V  P 
Sbjct: 58  LNAQNAASLPSACGVPPPY 76

Length = 79

>gnl|CDD|238926 cd01960, nsLTP1, nsLTP1: Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes

 Score = 46.6 bits (111), Expect = 1e-07
 Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 10/87 (11%)

Query: 27  DCNNVLISMSPCLDYITGNSSRPSSSCCS---ELSNTVKSQP--QCLCEVIKGGGSSASS 81
            C  V   ++PCL Y+TG    PS +CCS    L+   K+    Q  C  +K   +  S 
Sbjct: 2   SCGQVTSLLAPCLGYLTGGGPAPSPACCSGVKSLNGLAKTTADRQAACNCLKSAAAGIS- 60

Query: 82  LGINVNQTQAMALPSACNVQTP-PVSR 107
               +N  +A  LP  C V  P P+S 
Sbjct: 61  ---GLNPGRAAGLPGKCGVSIPYPISP 84

In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. The hydrophobic cavity accommodates various fatty acid ligands containing from ten to 18 carbon atoms. In general, the cavity is larger in nsLTP1 than in nsLTP2. nsLTP1 proteins are located in extracellular layers and in vacuolar structures. They may be involved in the formation of cutin layers on plant surfaces by transporting cutin monomers. Many nsLTP1 proteins have been characterized as allergens in humans. Length = 89

>gnl|CDD|238925 cd01959, nsLTP2, nsLTP2: Non-specific lipid-transfer protein type 2 (nsLTP2) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes

 Score = 33.8 bits (78), Expect = 0.004
 Identities = 27/69 (39%), Positives = 35/69 (50%), Gaps = 10/69 (14%)

Query: 35  MSPCLDYITGNSSRPSSSCCSELSNTVKSQPQCLCEVIKGGGSSASSLGINVNQTQAMAL 94
           +SPCL  I G  S PS++CC++L    K Q  CLC+  K       SL   VN   A  +
Sbjct: 6   LSPCLPAILG-GSPPSAACCAKL----KEQQSCLCQYAKN-----PSLKQYVNSPNARKV 55

Query: 95  PSACNVQTP 103
            +AC V  P
Sbjct: 56  LAACGVPYP 64

In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. nsLTP2 can bind lipids and sterols. Structure studies of rice nsLTPs show that the plasticity of the hydrophobic cavity is an important factor in ligand binding. The flexibility of the sLTP2 cavity allows its binding to rigid sterol molecules, whereas nsLTP1 cannot bind sterols despite its larger cavity size. The resulting nsLTP2/sterol complexes may bind to receptors that trigger defense responses. nsLTP2 gene expression has been observed in barley and rice developing seeds, during Zinnia elegans cell differentiation, and under abiotic stress conditions in barley roots. The nsLTP2 of Brassica rapa has also been identified as a potent allergen. Length = 66

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	159
cd01960	89	nsLTP1 nsLTP1: Non-specific lipid-transfer protein	99.63
PF14368	96	LTP_2: Probable lipid transfer; PDB: 2RKN_A 1N89_A	99.62
cd04660	73	nsLTP_like nsLTP_like: Non-specific lipid-transfer	99.59
cd00010	63	AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI),	99.55
cd01959	66	nsLTP2 nsLTP2: Non-specific lipid-transfer protein	99.41
smart00499	79	AAI Plant lipid transfer protein / seed storage pr	99.16
PF00234	90	Tryp_alpha_amyl: Protease inhibitor/seed storage/L	98.85
PF14547	85	Hydrophob_seed: Hydrophobic seed protein	97.06
cd01958	85	HPS_like HPS_like: Hydrophobic Protein from Soybea	96.36
cd00261	110	AAI_SS AAI_SS: Alpha-Amylase Inhibitors (AAIs) and	86.37

>cd01960 nsLTP1 nsLTP1: Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes

Probab=99.63  E-value=2.4e-16  Score=111.53  Aligned_cols=73  Identities=32%  Similarity=0.728  Sum_probs=61.4

Q ss_pred             CchhhhcCcccchhhhhCCCCCCChhhHHHHHhhhcc-----CccccccccccCCCCCcccCCcCCHHHHhhhhhcCCCC
Q 031445           27 DCNNVLISMSPCLDYITGNSSRPSSSCCSELSNTVKS-----QPQCLCEVIKGGGSSASSLGINVNQTQAMALPSACNVQ  101 (159)
Q Consensus        27 ~C~~~l~~L~pCl~yvtg~~~~Ps~~CC~~l~~v~~~-----~~~CLC~~i~~~~~~~~~lg~~in~t~A~~LP~~Cgv~  101 (159)
                      +|.+++..|.||++|+++++..|+++||++++++++.     +.+|+|+++++...   .+. +||.+||++||++||++
T Consensus         2 ~C~~v~~~l~~C~~y~~g~~~~Ps~~CC~~v~~l~~~~~t~~~~~~~C~C~~~~~~---~~~-~i~~~~a~~LP~~C~v~   77 (89)
T cd01960           2 SCGQVTSLLAPCLGYLTGGGPAPSPACCSGVKSLNGLAKTTADRQAACNCLKSAAA---GIS-GLNPGRAAGLPGKCGVS   77 (89)
T ss_pred             CHHHHHhhHHhHHHHHhCCCCCCChHHhhhhHHHhhccCCCCchhhhhhccccccc---ccC-CCCHHHHHhChHhcccC
Confidence            6999999999999999998888999999999998753     45788888887543   221 39999999999999999


Q ss_pred             CC
Q 031445          102 TP  103 (159)
Q Consensus       102 ~p  103 (159)
                      ++
T Consensus        78 ~~   79 (89)
T cd01960          78 IP   79 (89)
T ss_pred             CC
Confidence            76

In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. The hydrophobic cavity accommodates various fatty acid ligands containing from ten to 18 carbon atoms. In general, the cavity is larger in nsLTP1 than in nsLTP2. nsLTP1 proteins are located in extracellular layers and in vacuolar structures. They may be involved in the formation of cutin layers on plant surfaces by transporting cutin monomers. Many nsLTP1 proteins have been characterized as allergens in humans.

>PF14368 LTP_2: Probable lipid transfer; PDB: 2RKN_A 1N89_A 1TUK_A

Probab=99.62  E-value=4.4e-17  Score=115.14  Aligned_cols=78  Identities=45%  Similarity=1.037  Sum_probs=48.9

Q ss_pred             CCCchhhhcCcccchhhhhCCCCCCChhhHHHHHhhhccCccccccccccCCCCCcccCCcCCHHHHhhhhhcCCCCCCC
Q 031445           25 SSDCNNVLISMSPCLDYITGNSSRPSSSCCSELSNTVKSQPQCLCEVIKGGGSSASSLGINVNQTQAMALPSACNVQTPP  104 (159)
Q Consensus        25 ~~~C~~~l~~L~pCl~yvtg~~~~Ps~~CC~~l~~v~~~~~~CLC~~i~~~~~~~~~lg~~in~t~A~~LP~~Cgv~~pp  104 (159)
                      ..+|.+.+....+|+.|+.++ ..|++.||++++++++.++.|||+++++...    .+++||.+|+++||++||++.++
T Consensus        19 ~~~c~~~l~~c~~~~~~~~~~-~~Ps~~CC~~l~~~~~~~~~ClC~~~~~~~~----~~~~in~~~a~~Lp~~Cg~~~~~   93 (96)
T PF14368_consen   19 CCSCANSLLPCCPCLCYVTGG-PAPSAACCSALKSVVQADPPCLCQLLNSPGA----PGFGINVTRALALPAACGVPVPP   93 (96)
T ss_dssp             TTB-HCCCCHH--HHHHHCC------HHHHHHHCC----HCCHHHCCCC-CCH----CHHCCTCHHHHHHHHHCTSS-S-
T ss_pred             cchhHHHHhccccchhccCCC-CCCCHHHHHHHHHhccCCCCCHHHhcCcccc----ccCCcCHHHHHHHHHHcCCCCCC
Confidence            367866433333448888844 6899999999999988899999999998751    24579999999999999999988


Q ss_pred             CCCC
Q 031445          105 VSRC  108 (159)
Q Consensus       105 ~s~C  108 (159)
                       ++|
T Consensus        94 -~~C   96 (96)
T PF14368_consen   94 -SKC   96 (96)
T ss_dssp             ----
T ss_pred             -CCC
Confidence             777

>cd04660 nsLTP_like nsLTP_like: Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of predominantly uncharacterized proteins with similarity to nsLTPs, including Medicago truncatula MtN5, the root-specific Phaseolus vulgaris PVR3, Antirrhinum majus FIL1, and Lilium longiflorum LIM3

Probab=99.59  E-value=9.7e-16  Score=105.16  Aligned_cols=71  Identities=34%  Similarity=0.733  Sum_probs=59.4

Q ss_pred             chhhhcCcccchhhhhCCC--CCCChhhHHHHHhhhccCccccccccccCCCCCcccCCcCCHHHHhhhhhcCCCCCCCC
Q 031445           28 CNNVLISMSPCLDYITGNS--SRPSSSCCSELSNTVKSQPQCLCEVIKGGGSSASSLGINVNQTQAMALPSACNVQTPPV  105 (159)
Q Consensus        28 C~~~l~~L~pCl~yvtg~~--~~Ps~~CC~~l~~v~~~~~~CLC~~i~~~~~~~~~lg~~in~t~A~~LP~~Cgv~~pp~  105 (159)
                      |...+..|.||++|+++++  ..|++.||++++++   +..|+|.+++...     +. .||.+||.+||++||+++|| 
T Consensus         1 C~~~~~~L~~C~~yl~~~~~~~~Ps~~CC~~vk~~---~~~C~C~~~~~~~-----~~-~i~~~~a~~Lp~~Cgv~~p~-   70 (73)
T cd04660           1 CNMDLDLLAECQPYVTGPNPPPPPSRECCAALRRA---DLPCLCRYKTSLV-----LQ-IIDPDKAVYLPAKCGLPLPP-   70 (73)
T ss_pred             CCCCHHHHHHHHHHHcCCCCCCCCCHHHHHHHHcC---CcCCEeeccCCCc-----cc-ccCHHHHHHHHHHcCCCCCC-
Confidence            5666778899999999876  36999999999974   5679998887542     33 49999999999999999998 


Q ss_pred             CCC
Q 031445          106 SRC  108 (159)
Q Consensus       106 s~C  108 (159)
                      ++|
T Consensus        71 ~~C   73 (73)
T cd04660          71 SSC   73 (73)
T ss_pred             CCC
Confidence            887

Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. The MtN5 gene is induced during root nodule development. FIL1 is thought to be important in petal and stamen formation. The LIM3 gene is induced during the early prophase stage of meiosis in lily microsporocytes.

>cd00010 AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins

Probab=99.55  E-value=4.2e-15  Score=98.34  Aligned_cols=62  Identities=50%  Similarity=1.112  Sum_probs=53.8

Q ss_pred             cccchhhhhCCCCCCChhhHHHHHhhhccCccccccccccCCCCCcccCCcC-CHHHHhhhhhcCCC
Q 031445           35 MSPCLDYITGNSSRPSSSCCSELSNTVKSQPQCLCEVIKGGGSSASSLGINV-NQTQAMALPSACNV  100 (159)
Q Consensus        35 L~pCl~yvtg~~~~Ps~~CC~~l~~v~~~~~~CLC~~i~~~~~~~~~lg~~i-n~t~A~~LP~~Cgv  100 (159)
                      |.||++|++++...|++.||++++++.+.++.|+|+++++...   .. .++ |.+++++||++||+
T Consensus         1 L~~C~~y~~~~~~~Ps~~CC~~l~~~~~~~~~ClC~~~~~~~~---~~-~~~~~~~~a~~LP~~Cgv   63 (63)
T cd00010           1 LAPCLSYLTGGATAPPSDCCSGLKSVVKSDPKCLCAALNGPGA---SL-LGLKNATRALALPAACGL   63 (63)
T ss_pred             CcchHHHHcCCCCCCChHHHHHHHHHHhcChhhHHHHHcCccc---cc-cCcccHHHHHhchHhcCC
Confidence            5799999998877899999999999998889999999998754   22 234 79999999999996

Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges.

>cd01959 nsLTP2 nsLTP2: Non-specific lipid-transfer protein type 2 (nsLTP2) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes

Probab=99.41  E-value=1.9e-13  Score=92.70  Aligned_cols=60  Identities=42%  Similarity=0.791  Sum_probs=51.9

Q ss_pred             CcccchhhhhCCCCCCChhhHHHHHhhhccCccccccccccCCCCCcccCCcCCHHHHhhhhhcCCCCCC
Q 031445           34 SMSPCLDYITGNSSRPSSSCCSELSNTVKSQPQCLCEVIKGGGSSASSLGINVNQTQAMALPSACNVQTP  103 (159)
Q Consensus        34 ~L~pCl~yvtg~~~~Ps~~CC~~l~~v~~~~~~CLC~~i~~~~~~~~~lg~~in~t~A~~LP~~Cgv~~p  103 (159)
                      +|.+|++|++++ ..||++||+.|++    +..|||+|++++.     ++..||.++|++|+++||+++|
T Consensus         5 ~L~~C~~ai~~~-~~Ps~~CC~~Lk~----~~~CLC~y~~~p~-----l~~~i~~~~A~~l~~~Cgv~~P   64 (66)
T cd01959           5 QLSPCLPAILGG-SPPSAACCAKLKE----QQSCLCQYAKNPS-----LKQYVNSPNARKVLAACGVPYP   64 (66)
T ss_pred             hcccCHHHHhCC-CCCCHHHHHHHhc----CCCCeeeeecCcc-----HHhhcCcHHHHHHHHHcCCCCC
Confidence            789999999976 5799999999997    4489999998763     3445899999999999999986

In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. nsLTP2 can bind lipids and sterols. Structure studies of rice nsLTPs show that the plasticity of the hydrophobic cavity is an important factor in ligand binding. The flexibility of the sLTP2 cavity allows its binding to rigid sterol molecules, whereas nsLTP1 cannot bind sterols despite its larger cavity size. The resulting nsLTP2/sterol complexes may bind to receptors that trigger defense responses. nsLTP2 gene exp

>smart00499 AAI Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family

Probab=99.16  E-value=5.3e-11  Score=79.71  Aligned_cols=75  Identities=39%  Similarity=0.831  Sum_probs=59.2

Q ss_pred             chhhhcCcccchhhhhCC--CCCCChhhHHHHHhhhccCccccccccccCCCCCcccCC--cCCHHHHhhhhhcCCCCCC
Q 031445           28 CNNVLISMSPCLDYITGN--SSRPSSSCCSELSNTVKSQPQCLCEVIKGGGSSASSLGI--NVNQTQAMALPSACNVQTP  103 (159)
Q Consensus        28 C~~~l~~L~pCl~yvtg~--~~~Ps~~CC~~l~~v~~~~~~CLC~~i~~~~~~~~~lg~--~in~t~A~~LP~~Cgv~~p  103 (159)
                      |...+..+.+|++|+++.  ...|+.+||++++++.  +..|+|..++....   ....  .++..++.+||+.||+..+
T Consensus         1 C~~~~~~~~~c~~~~~~~~~~~~p~~~CC~~l~~~~--~~~C~C~~~~~~~~---~~~~~~~~~~~~a~~lp~~C~~~~~   75 (79)
T smart00499        1 CGQVLLQLAPCLSYLTGGSPGAPPSQQCCSQLRGLN--SAQCRCLALRAAVL---GILEIPGVNAQNAASLPSACGVPPP   75 (79)
T ss_pred             ChhhhhhHHhhHHHHcCCCCCCCCchHHHHHHHHhc--ccCCcchhhhcccc---cccchhhhhHHHHHhhHHhcCCCCC
Confidence            666777788999999987  4679999999999975  77899999887543   1111  2599999999999999976


Q ss_pred             CCCCC
Q 031445          104 PVSRC  108 (159)
Q Consensus       104 p~s~C  108 (159)
                      + +.|
T Consensus        76 ~-~~C   79 (79)
T smart00499       76 Y-TDC   79 (79)
T ss_pred             C-CCC
Confidence            4 455

>PF00234 Tryp_alpha_amyl: Protease inhibitor/seed storage/LTP family This is a small subfamily; InterPro: IPR003612 This domain is found is several proteins, including plant lipid transfer proteins [], seed storage proteins [] and trypsin-alpha amylase inhibitors [, ]

Probab=98.85  E-value=9.2e-11  Score=82.23  Aligned_cols=69  Identities=38%  Similarity=0.866  Sum_probs=55.6

Q ss_pred             cCcccchhhhhCCCCCCChhhHHHHHhhhccCccccccccccCCCCCccc---------CCcCCHHHHhhhhhcCCCCCC
Q 031445           33 ISMSPCLDYITGNSSRPSSSCCSELSNTVKSQPQCLCEVIKGGGSSASSL---------GINVNQTQAMALPSACNVQTP  103 (159)
Q Consensus        33 ~~L~pCl~yvtg~~~~Ps~~CC~~l~~v~~~~~~CLC~~i~~~~~~~~~l---------g~~in~t~A~~LP~~Cgv~~p  103 (159)
                      ..+.+|.+|++++...|+..||++|+++   ++.|.|..++....   ..         ...++..+|..||+.||+..+
T Consensus        13 ~~l~~c~~~~~~~~~~~~~~CC~~L~~l---~~~C~C~~i~~~~~---~~~~q~~~~~~~~~~~~~~a~~LP~~C~v~~~   86 (90)
T PF00234_consen   13 VRLSPCLPYLQGGCQQPSQQCCQQLRQL---DPQCRCEAIRQMVR---QVIQQQQQGGQEMQIMAQRAQNLPSMCNVSPP   86 (90)
T ss_dssp             SHHHGGHHHHTTSSSHHHHHHHHHHHHH---HHHHHHHHHHHHHH---HSHHCTSTCSHHHHHHHHHHHHHHHHTTSSSS
T ss_pred             ccccccHHHHhcccccchHHHhHHHHHH---hHHhhCHHHHHHHH---hhhhhhhhhHHHHHHHHHHHHHHHHHCCCCCC
Confidence            4588999999988778999999999997   77999999886532   10         126889999999999999987


Q ss_pred             CCCCC
Q 031445          104 PVSRC  108 (159)
Q Consensus       104 p~s~C  108 (159)
                      + ++|
T Consensus        87 ~-~~C   90 (90)
T PF00234_consen   87 Y-TDC   90 (90)
T ss_dssp             S-S-G
T ss_pred             C-CCC
Confidence            5 455

The domain forms a four-helical bundle in a right-handed superhelix with a folded leaf topology, which is stabilised by disulphide bonds, and which has an internal cavity. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; PDB: 1BFA_A 1BEA_A 1MID_A 1BE2_A 1LIP_A 3GSH_A 1JTB_A 1UVC_B 1BV2_A 1UVB_A ....

>PF14547 Hydrophob_seed: Hydrophobic seed protein

Probab=97.06  E-value=0.00027  Score=50.22  Aligned_cols=77  Identities=30%  Similarity=0.588  Sum_probs=53.6

Q ss_pred             chhhhcCcccchhhhh----CCCCCCChhhHHHHHhhhccCc-cccccccccCCCCCcccC-CcCCHHHHh-hhhhcCCC
Q 031445           28 CNNVLISMSPCLDYIT----GNSSRPSSSCCSELSNTVKSQP-QCLCEVIKGGGSSASSLG-INVNQTQAM-ALPSACNV  100 (159)
Q Consensus        28 C~~~l~~L~pCl~yvt----g~~~~Ps~~CC~~l~~v~~~~~-~CLC~~i~~~~~~~~~lg-~~in~t~A~-~LP~~Cgv  100 (159)
                      |.....+|--|.+.+.    .-+..+.++||.-++.+.+.+. .|||..++...     +| +++|....+ .|-+.||-
T Consensus         2 CP~d~lkLgvC~~vL~l~~~~~g~~~~~~CC~li~gL~d~~AA~CLC~aika~v-----lg~i~~~ipv~l~~lln~CGk   76 (85)
T PF14547_consen    2 CPRDALKLGVCANVLGLVNLVIGNPPRQPCCSLIAGLADLDAAVCLCTAIKANV-----LGLINVNIPVALNLLLNACGK   76 (85)
T ss_pred             CCCcchhhhhhhhhhhhhccccCCCCCCCcChHHhCcccchHHHHHHHHHhhhc-----ccccccccccHHHHHHHHhCC
Confidence            5444556777888771    1123478999999999876554 79999988753     45 454444444 56688999


Q ss_pred             CCCCCCCCC
Q 031445          101 QTPPVSRCN  109 (159)
Q Consensus       101 ~~pp~s~C~  109 (159)
                      +.|+.++|.
T Consensus        77 ~~p~gf~C~   85 (85)
T PF14547_consen   77 TVPSGFTCP   85 (85)
T ss_pred             cCcCCCcCC
Confidence            998888884

>cd01958 HPS_like HPS_like: Hydrophobic Protein from Soybean (HPS)-like subfamily; composed of proteins with similarity to HPS, a small hydrophobic protein with unknown function related to cereal-type alpha-amylase inhibitors and lipid transfer proteins

Probab=96.36  E-value=0.0034  Score=44.61  Aligned_cols=77  Identities=25%  Similarity=0.590  Sum_probs=54.2

Q ss_pred             CchhhhcCcccchhhhhCC----CCCCChhhHHHHHhhhccCc-cccccccccCCCCCcccCCcCCHHHHhhhh-hcCCC
Q 031445           27 DCNNVLISMSPCLDYITGN----SSRPSSSCCSELSNTVKSQP-QCLCEVIKGGGSSASSLGINVNQTQAMALP-SACNV  100 (159)
Q Consensus        27 ~C~~~l~~L~pCl~yvtg~----~~~Ps~~CC~~l~~v~~~~~-~CLC~~i~~~~~~~~~lg~~in~t~A~~LP-~~Cgv  100 (159)
                      .|..+..+|--|.+-+..-    ...|.++||.-++.+.+-+. .|||..++..     .+|+++|....+++- +.||-
T Consensus         3 ~CP~dalkLgvCanvL~l~~~~~g~~~~~~CC~ll~GL~dldAA~CLCtaikan-----~lgi~~~~pv~l~llln~CGk   77 (85)
T cd01958           3 TCPRDALKLGVCANVLGLSLLLLGTPAVQPCCPLIGGLADLDAAVCLCTAIKAN-----ILGISINIPVALSLLLNSCGR   77 (85)
T ss_pred             CCCcchHHhchhHhhhhccccccCCCccchHHHHHcCchhhheeeeeeeeeecc-----ccCcccccChhHHHHHHHHcC
Confidence            4555555666777766321    23677999999998876543 8999999875     356666666666444 67999


Q ss_pred             CCCCCCCC
Q 031445          101 QTPPVSRC  108 (159)
Q Consensus       101 ~~pp~s~C  108 (159)
                      ..|+.++|
T Consensus        78 ~~P~gf~C   85 (85)
T cd01958          78 NVPPGFTC   85 (85)
T ss_pred             cCCCCCcC
Confidence            99888877

In addition to HPS, members of this subfamily include a hybrid proline-rich protein (HyPRP) from maize, a dark-inducible protein (LeDI-2) from Lithospermum erythrorhizon, maize ZRP3 protein, and rice RcC3 protein. HyPRP is an embryo-specific protein that contains an N-terminal proline-rich domain and a C-terminal HPS-like cysteine-rich domain. It has been suggested that HyPRP may be involved in the stability and defense of the developing embryo. LeDI-2 is a root-specific protein that may be involved in regulating the biosynthesis of shikonin derivatives in L. erythrorhizon. Maize ZRP3 and rice RcC3 are root-specific proteins whose functions are yet to be determined. It has been reported that ZRP3 largely accumulates in a distinct subset

>cd00261 AAI_SS AAI_SS: Alpha-Amylase Inhibitors (AAIs) and Seed Storage (SS) Protein subfamily; composed of cereal-type AAIs and SS proteins

Probab=86.37  E-value=0.48  Score=34.05  Aligned_cols=71  Identities=25%  Similarity=0.579  Sum_probs=44.6

Q ss_pred             CcccchhhhhCCCC--------------CCChhhHHHHHhhhccCccccccccccCCCCCc-ccC----------CcCCH
Q 031445           34 SMSPCLDYITGNSS--------------RPSSSCCSELSNTVKSQPQCLCEVIKGGGSSAS-SLG----------INVNQ   88 (159)
Q Consensus        34 ~L~pCl~yvtg~~~--------------~Ps~~CC~~l~~v~~~~~~CLC~~i~~~~~~~~-~lg----------~~in~   88 (159)
                      .|.+|..|+.-...              ..-..||..|+.+   ++.|.|..|........ ..+          ...-.
T Consensus        14 ~L~~C~~yl~qq~~~~~~~~~~~~~~~~~~~qqCCqqL~~i---~~qcrC~al~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (110)
T cd00261          14 PLNSCREYLRQQCSGVGGPPVWPQQSCEVLRQQCCQQLAQI---PEQCRCEALRQMVQGVIQQQQQQQEQQQGQEVERMR   90 (110)
T ss_pred             cCcHHHHHHHHhccCCCCCCCcCccccHHHHHHHHHHHHhC---cHhhhHHHHHHHHHHHHHhhhccccccCcChHHHHH
Confidence            57789999864311              1247899999986   57899998853211000 000          11234


Q ss_pred             HHHhhhhhcCCCCCCCCCCCC
Q 031445           89 TQAMALPSACNVQTPPVSRCN  109 (159)
Q Consensus        89 t~A~~LP~~Cgv~~pp~s~C~  109 (159)
                      ..|..||..||+..+  ..|.
T Consensus        91 ~~a~~Lp~~C~~~~~--~~C~  109 (110)
T cd00261          91 QAAQNLPSMCNLYPP--PYCP  109 (110)
T ss_pred             HHHHhhchhcCCCCC--CCCC
Confidence            578899999999862  3574

They are mainly present in the seeds of a variety of plants. AAIs play an important role in the natural defenses of plants against insects and pathogens such as fungi, bacteria and viruses. AAIs impede the digestion of plant starch and proteins by inhibiting digestive alpha-amylases and proteinases. Also included in this subfamily are SS proteins such as 2S albumin, gamma-gliadin, napin, and prolamin. These AAIs and SS proteins are also known allergens in humans.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	159
1afh_A	93	Maize nonspecific lipid transfer protein; lipid-bi	2e-14
2alg_A	92	Non-specific lipid transfer protein; LTP, NS-LTP,	9e-12
1bwo_A	90	NS-LTP1, nonspecific lipid-transfer protein; wheat	2e-11
1t12_A	91	LTP 1, nonspecific lipid-transfer protein 1; cyste	2e-10
1siy_A	91	LTP 1, NS-LTP1, nonspecific lipid-transfer protein	4e-10
2rkn_A	77	DIR1 protein, AT5G48485; LTP, defense signaling pr	5e-06
1n89_A	67	Lipid transfer protein; lipid transport; HET: PGM;	5e-04
1l6h_A	69	LTP2, non-specific lipid transfer protein; NSLTP2,	8e-04

>1afh_A Maize nonspecific lipid transfer protein; lipid-binding protein, molecular modeling,; NMR {Zea mays} SCOP: a.52.1.1 PDB: 1fk0_A* 1fk1_A* 1fk2_A* 1fk3_A* 1fk4_A* 1fk5_A* 1fk6_A* 1fk7_A* 1mzl_A 1mzm_A* 1bv2_A 1rzl_A* 1uva_A* 1uvb_A* 1uvc_A* Length = 93

 Score = 64.1 bits (156), Expect = 2e-14
 Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 9/82 (10%)

Query: 27  DCNNVLISMSPCLDYITGNSSRPSSSCCS---ELSNTVKSQP--QCLCEVIKGGGSSASS 81
            C  V  +++PC+ Y  G  S PS+ CCS    L+N  ++    +  C  +K   +  S 
Sbjct: 3   SCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVS- 61

Query: 82  LGINVNQTQAMALPSACNVQTP 103
               +N   A ++PS C V  P
Sbjct: 62  ---GLNAGNAASIPSKCGVSIP 80

>2alg_A Non-specific lipid transfer protein; LTP, NS-LTP, FOOD allergen, lipid transport; HET: DAO P6G; 2.30A {Prunus persica} PDB: 2b5s_A* Length = 92

 Score = 57.1 bits (138), Expect = 9e-12
 Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 8/81 (9%)

Query: 27  DCNNVLISMSPCLDYITGNSSRPSSSCCS--ELSNTVKSQP--QCLCEVIKGGGSSASSL 82
            C  V  S++PC+ Y+ G  + P + C     ++N  ++ P  Q  C  +K   +S    
Sbjct: 3   TCGQVSSSLAPCIPYVRGGGAVPPACCNGIRNVNNLARTTPDRQAACNCLKQLSASVP-- 60

Query: 83  GINVNQTQAMALPSACNVQTP 103
              VN   A ALP  C V  P
Sbjct: 61  --GVNPNNAAALPGKCGVSIP 79

>1bwo_A NS-LTP1, nonspecific lipid-transfer protein; wheat, lipid binding, crystallography; HET: LPC; 2.10A {Triticum aestivum} SCOP: a.52.1.1 PDB: 1cz2_A* 1gh1_A 1be2_A* 1jtb_A* 1lip_A 1mid_A* 3cee_A* 3gsh_A* Length = 90

 Score = 56.0 bits (135), Expect = 2e-11
 Identities = 24/81 (29%), Positives = 33/81 (40%), Gaps = 8/81 (9%)

Query: 27  DCNNVLISMSPCLDYITGNSSRPSSSCCS--ELSNTVKSQP--QCLCEVIKGGGSSASSL 82
           DC +V   + PCL Y+ G        C     L N  +SQ   Q  C  +KG        
Sbjct: 2   DCGHVDSLVRPCLSYVQGGPGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIH-- 59

Query: 83  GINVNQTQAMALPSACNVQTP 103
             N+N+  A ++P  C V  P
Sbjct: 60  --NLNEDNARSIPPKCGVNLP 78

>1t12_A LTP 1, nonspecific lipid-transfer protein 1; cystein rich protein, lipid transport; NMR {Nicotiana tabacum} Length = 91

 Score = 53.7 bits (129), Expect = 2e-10
 Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 11/82 (13%)

Query: 27  DCNNVLISMSPCLDYITGNSSRPSSSCCS---ELSNTVKSQP--QCLCEVIKGGGSSASS 81
            C  V  +++PCL Y+      P   CC     L N+ ++    Q  C  +K    + S 
Sbjct: 3   TCGQVTSNLAPCLAYLRNTG--PLGRCCGGVKALVNSARTTEDRQIACTCLKSAAGAIS- 59

Query: 82  LGINVNQTQAMALPSACNVQTP 103
               +N  +A  LPS C V  P
Sbjct: 60  ---GINLGKAAGLPSTCGVNIP 78

>1siy_A LTP 1, NS-LTP1, nonspecific lipid-transfer protein 1; alpha helix, lipid binding protein; NMR {Vigna radiata var} Length = 91

 Score = 52.6 bits (126), Expect = 4e-10
 Identities = 17/81 (20%), Positives = 32/81 (39%), Gaps = 8/81 (9%)

Query: 27  DCNNVLISMSPCLDYITGNSSRPSSSCCS--ELSNTVKSQP--QCLCEVIKGGGSSASSL 82
            C  V  +++ C+ ++      P S C     + N+ ++    + +C  +K    +    
Sbjct: 2   TCGQVQGNLAQCIGFLQKGGVVPPSCCTGVKNILNSSRTTADRRAVCSCLKAAAGAVR-- 59

Query: 83  GINVNQTQAMALPSACNVQTP 103
              +N   A ALP  C V  P
Sbjct: 60  --GINPNNAEALPGKCGVNIP 78

>2rkn_A DIR1 protein, AT5G48485; LTP, defense signaling protein, signaling protein, lipid TRA; HET: LP3; 1.60A {Arabidopsis thaliana} Length = 77

 Score = 41.6 bits (97), Expect = 5e-06
 Identities = 18/78 (23%), Positives = 28/78 (35%), Gaps = 8/78 (10%)

Query: 28  CNNVLISMSPCLDYITG-NSSRPSSSCCSELSNTVKSQPQCLCEVIKGGGSSASSLGINV 86
           C      ++ C   ++  N + PS  CC+ L     +   CLC         +      V
Sbjct: 5   CGMSQDELNECKPAVSKENPTSPSQPCCTALQ---HADFACLCGYKNSPWLGS----FGV 57

Query: 87  NQTQAMALPSACNVQTPP 104
           +   A ALP  C +   P
Sbjct: 58  DPELASALPKQCGLANAP 75

>1n89_A Lipid transfer protein; lipid transport; HET: PGM; NMR {Triticum turgidum subsp} SCOP: a.52.1.1 PDB: 1tuk_A* Length = 67

 Score = 36.0 bits (83), Expect = 5e-04
 Identities = 15/71 (21%), Positives = 27/71 (38%), Gaps = 10/71 (14%)

Query: 33  ISMSPCLDYITGNSSRPSSSCCSELSNTVKSQPQCLCEVIKGGGSSASSLGINVNQTQAM 92
             ++ C   I    ++PS  CC  L    ++Q  C C+  K       + G  +    A 
Sbjct: 5   SQLAVCASAILS-GAKPSGECCGNL----RAQQGCFCQYAKD-----PTYGQYIRSPHAR 54

Query: 93  ALPSACNVQTP 103
              ++C +  P
Sbjct: 55  DTLTSCGLAVP 65

>1l6h_A LTP2, non-specific lipid transfer protein; NSLTP2, plant LTP, lipid transport; NMR {Oryza sativa} SCOP: a.52.1.1 Length = 69

 Score = 35.2 bits (81), Expect = 8e-04
 Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 13/77 (16%)

Query: 33  ISMSPCLDYITGNSSRPSSSCCSELSNTVKSQPQCLCEVIKGGGSSASSLGINVNQTQAM 92
             ++ C   I G +  P+++CCS L    ++Q  C C+  K         G  VN   A 
Sbjct: 6   GQLTVCTGAIAGGAR-PTAACCSSL----RAQQGCFCQFAKD-----PRYGRYVNSPNAR 55

Query: 93  ALPSACNVQTPPVSRCN 109
              S+C +    +  C+
Sbjct: 56  KAVSSCGI---ALPTCH 69

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	159
2ljo_A	93	Non-specific lipid-transfer protein 2; lipid trans	99.7
1afh_A	93	Maize nonspecific lipid transfer protein; lipid-bi	99.68
2alg_A	92	Non-specific lipid transfer protein; LTP, NS-LTP,	99.66
1bwo_A	90	NS-LTP1, nonspecific lipid-transfer protein; wheat	99.66
1t12_A	91	LTP 1, nonspecific lipid-transfer protein 1; cyste	99.66
1siy_A	91	LTP 1, NS-LTP1, nonspecific lipid-transfer protein	99.66
2rkn_A	77	DIR1 protein, AT5G48485; LTP, defense signaling pr	99.6
1n89_A	67	Lipid transfer protein; lipid transport; HET: PGM;	99.47
1l6h_A	69	LTP2, non-specific lipid transfer protein; NSLTP2,	99.45
1hyp_A	80	Hydrophobic protein from soybean; hydrophobic SEED	97.07
3ob4_A	500	Conglutin, maltose ABC transporter periplasmic pro	95.6
1sm7_A	109	Recombinant IB pronapin; all alpha-helix, right-ha	92.14
1pnb_B	75	Napin BNIB; napin IA and IB, albumin SEED protein,	90.14
1s6d_A	103	Albumin 8; all helix, folded LEAF, right-handed su	89.83
1psy_A	125	2S albumin, RICC3; albumin SEED protein, SEED stor	89.76
1hss_A	124	0.19 alpha-amylase inhibitor; cereal inhibitor, an	89.76
2ds2_B	72	Sweet protein mabinlin-2 chain B; plant protein, S	89.1
2lvf_A	114	2S albumin; allergen, copper binding, hydrophobic	87.35
1bea_A	127	Bifunctional amylase/serine protease inhibitor; am	85.87
1w2q_A	127	Conglutin, ARA H 6; allergen, allergene; NMR {Arac	84.13
1b1u_A	122	Protein (alpha-amylase/trypsin inhibitor RATI); bi	83.58

>2ljo_A Non-specific lipid-transfer protein 2; lipid transport; NMR {Lens culinaris}

Probab=99.70  E-value=1.7e-18  Score=123.44  Aligned_cols=81  Identities=33%  Similarity=0.734  Sum_probs=68.6

Q ss_pred             CCchhhhcCcccchhhhhCCCCCCChhhHHHHHhhhc-----cCccccccccccCCCCCcccCCcCCHHHHhhhhhcCCC
Q 031445           26 SDCNNVLISMSPCLDYITGNSSRPSSSCCSELSNTVK-----SQPQCLCEVIKGGGSSASSLGINVNQTQAMALPSACNV  100 (159)
Q Consensus        26 ~~C~~~l~~L~pCl~yvtg~~~~Ps~~CC~~l~~v~~-----~~~~CLC~~i~~~~~~~~~lg~~in~t~A~~LP~~Cgv  100 (159)
                      .+|.+++..|+||++|++|++ .|++.||++++++..     .+++|+|+++++...   . ..+||.+||++||++|||
T Consensus         2 isC~~v~~~L~pCl~Yv~g~~-~p~~~CC~gv~~l~~~a~t~~dr~~~C~clk~~a~---~-~~~in~~~a~~LP~~CgV   76 (93)
T 2ljo_A            2 ISCGAVTSDLSPCLTYLTGGP-GPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAG---S-ITKLNTNNAAALPGKCGV   76 (93)
T ss_dssp             CSSHHHHHHHHHHHHHHTTSS-CCCHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHGG---G-CTTCCHHHHHHHHHHHTC
T ss_pred             CCHHHHHHHHHhHHHHHcCCC-CCCCchhhHHHHHHHHhcCcccHHHHHHhHHhhhh---c-cCCcCHHHHHhhhHhcCC
Confidence            579999999999999999874 699999999998864     246899999998654   3 357999999999999999


Q ss_pred             CCC----CCCCCCCC
Q 031445          101 QTP----PVSRCNAA  111 (159)
Q Consensus       101 ~~p----p~s~C~~~  111 (159)
                      ++|    |.++|+..
T Consensus        77 ~~p~~Is~~~dC~~v   91 (93)
T 2ljo_A           77 NIPYKISTTTNCNTV   91 (93)
T ss_dssp             CCSSCCSTTCCGGGC
T ss_pred             CCCCCCCCCCCCCCC
Confidence            998    56688764

>1afh_A Maize nonspecific lipid transfer protein; lipid-binding protein, molecular modeling,; NMR {Zea mays} SCOP: a.52.1.1 PDB: 1fk0_A* 1fk1_A* 1fk2_A* 1fk3_A* 1fk4_A* 1fk5_A* 1fk6_A* 1fk7_A* 1mzl_A 1mzm_A* 1bv2_A 1rzl_A* 1uva_A* 1uvb_A* 1uvc_A*

Probab=99.68  E-value=6.8e-18  Score=120.04  Aligned_cols=80  Identities=29%  Similarity=0.717  Sum_probs=65.0

Q ss_pred             CCchhhhcCcccchhhhhCCCCCCChhhHHHHHhhhc-------cCccccccccccCCCCCcccCCcCCHHHHhhhhhcC
Q 031445           26 SDCNNVLISMSPCLDYITGNSSRPSSSCCSELSNTVK-------SQPQCLCEVIKGGGSSASSLGINVNQTQAMALPSAC   98 (159)
Q Consensus        26 ~~C~~~l~~L~pCl~yvtg~~~~Ps~~CC~~l~~v~~-------~~~~CLC~~i~~~~~~~~~lg~~in~t~A~~LP~~C   98 (159)
                      .+|.+++..|.||++|++++.+.|+++||++++++.+       ++..|+|.  +....   .++ +||.++|++||++|
T Consensus         2 ~~C~~v~~~L~pCl~y~~~~~~~Ps~~CC~gv~~l~~~a~t~~dr~~~ClC~--~~~~~---~~~-~in~~~A~~LP~~C   75 (93)
T 1afh_A            2 ISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCL--KNAAA---GVS-GLNAGNAASIPSKC   75 (93)
T ss_dssp             CSSHHHHHHHGGGHHHHTTSCCSCCHHHHHHHHHHHHHCCSSHHHHHHHHHH--HHHHT---TST-TCCHHHHHHHHHHH
T ss_pred             CChHHHHHhccCcHHHHcCCCCCChHHHHHHHHHHHHhhcCCCCCcccCEee--ccccc---ccc-CcCHHHHHHHHHHc
Confidence            5799999999999999999887899999999999862       23579994  43322   344 79999999999999


Q ss_pred             CCCCC----CCCCCCCC
Q 031445           99 NVQTP----PVSRCNAA  111 (159)
Q Consensus        99 gv~~p----p~s~C~~~  111 (159)
                      |+++|    +.++|+..
T Consensus        76 ~v~~p~~is~~~dC~~v   92 (93)
T 1afh_A           76 GVSIPYTISTSTDCSRV   92 (93)
T ss_dssp             HCCCSSCCSTTCCSSSC
T ss_pred             CCCCCCCCCCCCCCccC
Confidence            99986    45688764

>2alg_A Non-specific lipid transfer protein; LTP, NS-LTP, FOOD allergen, lipid transport; HET: DAO P6G; 2.30A {Prunus persica} PDB: 2b5s_A*

Probab=99.66  E-value=1.1e-17  Score=118.71  Aligned_cols=79  Identities=30%  Similarity=0.676  Sum_probs=64.8

Q ss_pred             CCchhhhcCcccchhhhhCCCCCCChhhHHHHHhhh-------ccCccccccccccCCCCCcccCCcCCHHHHhhhhhcC
Q 031445           26 SDCNNVLISMSPCLDYITGNSSRPSSSCCSELSNTV-------KSQPQCLCEVIKGGGSSASSLGINVNQTQAMALPSAC   98 (159)
Q Consensus        26 ~~C~~~l~~L~pCl~yvtg~~~~Ps~~CC~~l~~v~-------~~~~~CLC~~i~~~~~~~~~lg~~in~t~A~~LP~~C   98 (159)
                      .+|++++..|.||++|+++++ .|+++||+++++++       ++++.|+|.+....     .++ +||.++|++||++|
T Consensus         2 ~~C~~v~~~L~pCl~y~~~~~-~p~~~CC~~lk~l~~~a~t~~d~~~~ClC~~~~~~-----~~~-~in~~~A~~LP~~C   74 (92)
T 2alg_A            2 ITCGQVSSSLAPCIPYVRGGG-AVPPACCNGIRNVNNLARTTPDRQAACNCLKQLSA-----SVP-GVNPNNAAALPGKC   74 (92)
T ss_dssp             CCHHHHHHHHGGGHHHHHHCS-CCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHH-----HST-TCCHHHHHHHHHHT
T ss_pred             CChHHHHHhccCcHHHHcCCC-CCCHHHHHHHHHHHhhhcccCCCCcCCccccCccc-----ccC-ccChHHHHHHHHHc
Confidence            579999999999999999876 48999999999987       45578999754322     455 89999999999999


Q ss_pred             CCCCC----CCCCCCCC
Q 031445           99 NVQTP----PVSRCNAA  111 (159)
Q Consensus        99 gv~~p----p~s~C~~~  111 (159)
                      ||++|    +.++|+..
T Consensus        75 gv~~p~~is~~~dC~~v   91 (92)
T 2alg_A           75 GVSIPYKISASTNCATV   91 (92)
T ss_dssp             TCCCSSCSSTTSCGGGC
T ss_pred             CCCCCCCCCCCCCCccC
Confidence            99987    44688754

>1bwo_A NS-LTP1, nonspecific lipid-transfer protein; wheat, lipid binding, crystallography; HET: LPC; 2.10A {Triticum aestivum} SCOP: a.52.1.1 PDB: 1cz2_A* 1gh1_A 1be2_A* 1jtb_A* 1lip_A 1mid_A* 3cee_A* 3gsh_A*

Probab=99.66  E-value=9.8e-18  Score=118.63  Aligned_cols=77  Identities=34%  Similarity=0.769  Sum_probs=63.3

Q ss_pred             CchhhhcCcccchhhhhCCCCCCChhhHHHHHhhhc-------cCccccccccccCCCCCcccCCcCCHHHHhhhhhcCC
Q 031445           27 DCNNVLISMSPCLDYITGNSSRPSSSCCSELSNTVK-------SQPQCLCEVIKGGGSSASSLGINVNQTQAMALPSACN   99 (159)
Q Consensus        27 ~C~~~l~~L~pCl~yvtg~~~~Ps~~CC~~l~~v~~-------~~~~CLC~~i~~~~~~~~~lg~~in~t~A~~LP~~Cg   99 (159)
                      +|.+++..|.||++|++++++ |+++||++++++.+       ++..|+|  +++...   .++ +||.++|++||++||
T Consensus         2 ~C~~v~~~L~pCl~y~~~~~~-Ps~~CC~~lk~l~~~a~t~~dr~~~ClC--lk~~~~---~~~-~in~~~A~~LP~~C~   74 (90)
T 1bwo_A            2 DCGHVDSLVRPCLSYVQGGPG-PSGQCCDGVKNLHNQARSQSDRQSACNC--LKGIAR---GIH-NLNEDNARSIPPKCG   74 (90)
T ss_dssp             CHHHHHHHHGGGHHHHTTCSC-CCHHHHHHHHHHHHHCCSHHHHHHHHHH--HHHHHT---TCT-TCCHHHHHTHHHHHT
T ss_pred             CHHHHHHhhcccHHHHcCCCC-CCHHHhHHHHHHHhhccCCCCCCccCcC--ccCchh---ccC-CcCHHHHHHHHHHcC
Confidence            699999999999999999876 99999999999873       2468999  555433   444 799999999999999


Q ss_pred             CCCC----CCCCCCC
Q 031445          100 VQTP----PVSRCNA  110 (159)
Q Consensus       100 v~~p----p~s~C~~  110 (159)
                      |++|    |.++|+.
T Consensus        75 v~~p~~is~~~dC~~   89 (90)
T 1bwo_A           75 VNLPYTISLNIDCSR   89 (90)
T ss_dssp             CCCSSCCCTTCCGGG
T ss_pred             CCCCCCCCCCCCCCC
Confidence            9986    4457764

>1t12_A LTP 1, nonspecific lipid-transfer protein 1; cystein rich protein, lipid transport; NMR {Nicotiana tabacum}

Probab=99.66  E-value=1.2e-17  Score=118.51  Aligned_cols=78  Identities=31%  Similarity=0.758  Sum_probs=64.5

Q ss_pred             CCchhhhcCcccchhhhhCCCCCCChhhHHHHHhhhcc-------CccccccccccCCCCCcccCCcCCHHHHhhhhhcC
Q 031445           26 SDCNNVLISMSPCLDYITGNSSRPSSSCCSELSNTVKS-------QPQCLCEVIKGGGSSASSLGINVNQTQAMALPSAC   98 (159)
Q Consensus        26 ~~C~~~l~~L~pCl~yvtg~~~~Ps~~CC~~l~~v~~~-------~~~CLC~~i~~~~~~~~~lg~~in~t~A~~LP~~C   98 (159)
                      .+|.+++..|.||++|++++++ |+ .||++++++.+.       ++.|+|  +++...   .++ +||.++|++||++|
T Consensus         2 ~~C~~v~~~L~pCl~y~~~~~~-P~-~CC~gv~~l~~~a~t~~dr~~~ClC--lk~~~~---~~~-~in~~~A~~LP~~C   73 (91)
T 1t12_A            2 ITCGQVTSNLAPCLAYLRNTGP-LG-RCCGGVKALVNSARTTEDRQIACTC--LKSAAG---AIS-GINLGKAAGLPSTC   73 (91)
T ss_dssp             CCHHHHHHHTHHHHHHHTTSSC-CT-THHHHHHHHHHTTCSTHHHHHHHHH--HHHHHH---HCT-TCCHHHHHHHHHHT
T ss_pred             CChHHHHHhccCcHHHHcCCCC-hH-HHHHHHHHHHhhccCCCCCCccCCC--cccccc---ccC-CcChhHHHHHHHHc
Confidence            5799999999999999999877 88 999999998752       578999  454432   455 89999999999999


Q ss_pred             CCCCC----CCCCCCCC
Q 031445           99 NVQTP----PVSRCNAA  111 (159)
Q Consensus        99 gv~~p----p~s~C~~~  111 (159)
                      |+++|    |.++|+.+
T Consensus        74 ~v~~p~~is~~~dC~~v   90 (91)
T 1t12_A           74 GVNIPYKISPSTDCSKV   90 (91)
T ss_dssp             TCCCSSCSSSSSCCTTC
T ss_pred             CCCCCCCCCCCCCCccC
Confidence            99987    45688764

>1siy_A LTP 1, NS-LTP1, nonspecific lipid-transfer protein 1; alpha helix, lipid binding protein; NMR {Vigna radiata var}

Probab=99.66  E-value=1.7e-17  Score=117.58  Aligned_cols=78  Identities=26%  Similarity=0.665  Sum_probs=63.9

Q ss_pred             CchhhhcCcccchhhhhCCCCCCChhhHHHHHhhhc-------cCccccccccccCCCCCcccCCcCCHHHHhhhhhcCC
Q 031445           27 DCNNVLISMSPCLDYITGNSSRPSSSCCSELSNTVK-------SQPQCLCEVIKGGGSSASSLGINVNQTQAMALPSACN   99 (159)
Q Consensus        27 ~C~~~l~~L~pCl~yvtg~~~~Ps~~CC~~l~~v~~-------~~~~CLC~~i~~~~~~~~~lg~~in~t~A~~LP~~Cg   99 (159)
                      +|.+++..|.||++|++++++ |+++||++++++++       ++..|+|.  ++...   .++ +||.++|++||++||
T Consensus         2 ~C~~v~~~L~pCl~yv~~~~~-Ps~~CC~~lk~l~~~a~t~~d~~~~ClC~--k~~~~---~~~-~in~~~A~~LP~~Cg   74 (91)
T 1siy_A            2 TCGQVQGNLAQCIGFLQKGGV-VPPSCCTGVKNILNSSRTTADRRAVCSCL--KAAAG---AVR-GINPNNAEALPGKCG   74 (91)
T ss_dssp             CTTTTHHHHHHHHHHHTSCSC-CCHHHHHHHHHHHTTTCSSHHHHHHHHHH--HHHTT---CCS-SCCHHHHHHHHHHHT
T ss_pred             CHHHHHHhccCcHHHHhCCCC-CcHHHHHHHHHHHhhhccCCCCCcCCccc--CCccc---ccC-CcCHHHHHHHHHHcC
Confidence            699999999999999999876 99999999999863       24579994  55433   444 799999999999999


Q ss_pred             CCCC----CCCCCCCC
Q 031445          100 VQTP----PVSRCNAA  111 (159)
Q Consensus       100 v~~p----p~s~C~~~  111 (159)
                      +++|    +.++|+..
T Consensus        75 v~~p~~is~~~dC~~v   90 (91)
T 1siy_A           75 VNIPYKISTSTNCNSI   90 (91)
T ss_dssp             CCCSSCSCTTSCSSTT
T ss_pred             CCCCCCCCCCCCCccC
Confidence            9986    45688764

>2rkn_A DIR1 protein, AT5G48485; LTP, defense signaling protein, signaling protein, lipid TRA; HET: LP3; 1.60A {Arabidopsis thaliana}

Probab=99.60  E-value=7e-17  Score=110.90  Aligned_cols=72  Identities=25%  Similarity=0.534  Sum_probs=60.8

Q ss_pred             CCchhhhcCcccchhhhhCC-CCCCChhhHHHHHhhhccCccccccccccCCCCCcccCCcCCHHHHhhhhhcCCCCCCC
Q 031445           26 SDCNNVLISMSPCLDYITGN-SSRPSSSCCSELSNTVKSQPQCLCEVIKGGGSSASSLGINVNQTQAMALPSACNVQTPP  104 (159)
Q Consensus        26 ~~C~~~l~~L~pCl~yvtg~-~~~Ps~~CC~~l~~v~~~~~~CLC~~i~~~~~~~~~lg~~in~t~A~~LP~~Cgv~~pp  104 (159)
                      .+|++++.+|.||++|++++ ...|++.||+++++   .|+.|||.+++++..  +.  ++||.++|++||++||+++|+
T Consensus         3 ~~C~~~~~~L~pC~~yv~~~~~~~Ps~~CC~~lk~---~~~~ClC~~~~~~~~--~~--~gin~~~A~~LP~~Cgv~~p~   75 (77)
T 2rkn_A            3 DLCGMSQDELNECKPAVSKENPTSPSQPCCTALQH---ADFACLCGYKNSPWL--GS--FGVDPELASALPKQCGLANAP   75 (77)
T ss_dssp             CBTTBCHHHHHHHGGGGBSSSCCCCCHHHHHHHTT---CCHHHHHTTTTCHHH--HH--HTBCHHHHHHHHHHTTCSCCC
T ss_pred             chHHhHHHhHhhCHHHHcCCCCCCCCHHHHHHHHh---cCcCCcCcccCCcch--hh--cCcCHHHHHHHHHHcCCCCCC
Confidence            67999999999999999983 46899999999997   467999998886421  13  369999999999999999875

>1n89_A Lipid transfer protein; lipid transport; HET: PGM; NMR {Triticum turgidum subsp} SCOP: a.52.1.1 PDB: 1tuk_A*

Probab=99.47  E-value=5.6e-15  Score=99.19  Aligned_cols=60  Identities=25%  Similarity=0.623  Sum_probs=52.1

Q ss_pred             CcccchhhhhCCCCCCChhhHHHHHhhhccCccccccccccCCCCCcccCCcCCHHHHhhhhhcCCCCCC
Q 031445           34 SMSPCLDYITGNSSRPSSSCCSELSNTVKSQPQCLCEVIKGGGSSASSLGINVNQTQAMALPSACNVQTP  103 (159)
Q Consensus        34 ~L~pCl~yvtg~~~~Ps~~CC~~l~~v~~~~~~CLC~~i~~~~~~~~~lg~~in~t~A~~LP~~Cgv~~p  103 (159)
                      +|.||++|++++ ..|+.+||++|++    +..|+|.++++..     ++.+||.++|++||++|||++|
T Consensus         6 ~L~pC~~~v~~~-~~Ps~~CC~~lk~----~~~ClC~~~k~~~-----~~~~in~~~A~~Lp~~Cgv~~P   65 (67)
T 1n89_A            6 QLAVCASAILSG-AKPSGECCGNLRA----QQGCFCQYAKDPT-----YGQYIRSPHARDTLTSCGLAVP   65 (67)
T ss_dssp             TTHHHHHHHTTC-CCCCHHHHHHHHH----HSSHHHHGGGCST-----THHHHTCHHHHHHHHHHTSCCS
T ss_pred             hcccCHHHHcCC-CCCCHHHHHhhCC----CCCCCCccccCcc-----cccccCHHHHHHHHHHcCCCCC
Confidence            789999999987 4699999999997    3689999999864     3346999999999999999986

>1l6h_A LTP2, non-specific lipid transfer protein; NSLTP2, plant LTP, lipid transport; NMR {Oryza sativa} SCOP: a.52.1.1

Probab=99.45  E-value=7.2e-15  Score=99.17  Aligned_cols=65  Identities=34%  Similarity=0.724  Sum_probs=54.6

Q ss_pred             CchhhhcCcccchhhhhCCCCCCChhhHHHHHhhhccCccccccccccCCCCCcccCCcCCHHHHhhhhhcCCCCCC
Q 031445           27 DCNNVLISMSPCLDYITGNSSRPSSSCCSELSNTVKSQPQCLCEVIKGGGSSASSLGINVNQTQAMALPSACNVQTP  103 (159)
Q Consensus        27 ~C~~~l~~L~pCl~yvtg~~~~Ps~~CC~~l~~v~~~~~~CLC~~i~~~~~~~~~lg~~in~t~A~~LP~~Cgv~~p  103 (159)
                      .|+..  +|.||++|++++. .|+.+||++||+    +..|+|.++++..     ++.+||.++|++||++|||++|
T Consensus         2 ~C~~~--~L~pC~~~v~~~~-~Ps~~CC~~lk~----~~~ClC~~~k~~~-----~~~~in~~~A~~Lp~~Cgv~~P   66 (69)
T 1l6h_A            2 GCNAG--QLTVCTGAIAGGA-RPTAACCSSLRA----QQGCFCQFAKDPR-----YGRYVNSPNARKAVSSCGIALP   66 (69)
T ss_dssp             CSTTT--THHHHHHHHTTCC-STTHHHHHHHHH----HHHHHHHHTTCSS-----HHHHTTTTTGGGCCCCCSSCSC
T ss_pred             CCChh--hcccCHHHHcCCC-CCCHHHHHhhCC----CCCCCCccccCcc-----cccccCHHHHHHHHHHcCCCCC
Confidence            36554  7899999999874 699999999997    3689999998863     3346999999999999999985

>1hyp_A Hydrophobic protein from soybean; hydrophobic SEED protein; 1.80A {Glycine max} SCOP: a.52.1.1

Probab=97.07  E-value=0.0003  Score=48.43  Aligned_cols=73  Identities=23%  Similarity=0.608  Sum_probs=54.4

Q ss_pred             CCCchhhhcCcccchhhhhCCCCCCChhhHHHHHhhhccC-ccccccccccCCCCCcccCCcCCHHHHhh-hhhcCCCCC
Q 031445           25 SSDCNNVLISMSPCLDYITGNSSRPSSSCCSELSNTVKSQ-PQCLCEVIKGGGSSASSLGINVNQTQAMA-LPSACNVQT  102 (159)
Q Consensus        25 ~~~C~~~l~~L~pCl~yvtg~~~~Ps~~CC~~l~~v~~~~-~~CLC~~i~~~~~~~~~lg~~in~t~A~~-LP~~Cgv~~  102 (159)
                      +..|.    +|--|.+-+.+. ..|.++||.-++.+++-+ ..|||..++-       +|+ +|...+++ |-+.||...
T Consensus         5 ~~~CP----kLgvCanvL~g~-~~~~~~CC~Ll~GL~dleAAvCLCtaik~-------Lgi-lnlpv~L~llln~Cgk~~   71 (80)
T 1hyp_A            5 RPSCP----DLSICLNILGGS-LGTVDDCCALIGGLGDIEAIVCLCIQLRA-------LGI-LNLNRNLQLILNSCGRSY   71 (80)
T ss_dssp             -CCSC----CCGGGGGGGGTC-CTTHHHHHHHHHTSCHHHHHHHHHHHHHH-------HTC-SCHHHHHHHHHHHTTCSS
T ss_pred             CCCCC----chhHHHHHhCcC-CCCCCccchhhhCcchhhhhhhhhhhccc-------cce-eecChhHHHHHHHhCCcC
Confidence            36787    577899988543 347789999999887544 3799988872       355 67766666 557899999


Q ss_pred             CCCCCCCC
Q 031445          103 PPVSRCNA  110 (159)
Q Consensus       103 pp~s~C~~  110 (159)
                      |+.++|..
T Consensus        72 P~gF~C~~   79 (80)
T 1hyp_A           72 PSNATCPR   79 (80)
T ss_dssp             CCCCCCSC
T ss_pred             cCCCCCCC
Confidence            99999973

>3ob4_A Conglutin, maltose ABC transporter periplasmic protein, ARAH; alpha-amylase inhibitors (AAI), lipid transfer (LT) and SEED (SS) protein family; HET: MLR; 2.71A {Escherichia coli}

Probab=95.60  E-value=0.00057  Score=59.42  Aligned_cols=54  Identities=26%  Similarity=0.703  Sum_probs=36.7

Q ss_pred             hhhHHHHHhhhccCccccccccccCCCCCccc----C----CcCCHHHHhhhhhcCCCCCCCCCCCCC
Q 031445           51 SSCCSELSNTVKSQPQCLCEVIKGGGSSASSL----G----INVNQTQAMALPSACNVQTPPVSRCNA  110 (159)
Q Consensus        51 ~~CC~~l~~v~~~~~~CLC~~i~~~~~~~~~l----g----~~in~t~A~~LP~~Cgv~~pp~s~C~~  110 (159)
                      .+||+.|+++- .+++|.|..|.....+  ..    +    ..+ ..+|..||..||+..|  .+|+-
T Consensus       429 ~~cc~~l~~~~-~~~~c~c~~~~~~~~~--~~~~~~~~~~~~~~-~~~a~~~p~~c~~~~~--~~c~~  490 (500)
T 3ob4_A          429 ERCCNELNEFE-NNQRCMCEALQQIMEN--QSDRLQGRQQEQQF-KRELRNLPQQCGLRAP--QRCDL  490 (500)
T ss_dssp             HHHHHHHGGGT-TCHHHHHHHHHHHHHH--HHTTCCSSHHHHHH-HHHHHTHHHHTTCCCC--SCCCC
T ss_pred             HHHHHHHHhCC-cccccccHHHHHHHHH--HHHHhhhHHHHHHH-HHHHhhCchhcCCCCC--ccCCc
Confidence            79999999862 2289999988653210  00    0    112 3459999999999843  57983

>1sm7_A Recombinant IB pronapin; all alpha-helix, right-handed superhelix, plant protein; NMR {Brassica napus}

Probab=92.14  E-value=0.019  Score=41.05  Aligned_cols=78  Identities=23%  Similarity=0.545  Sum_probs=47.5

Q ss_pred             chhhhcC---cccchhhhhCC----C--CCC---------ChhhHHHHHhhhccCccccccccccCCCC---CcccCC--
Q 031445           28 CNNVLIS---MSPCLDYITGN----S--SRP---------SSSCCSELSNTVKSQPQCLCEVIKGGGSS---ASSLGI--   84 (159)
Q Consensus        28 C~~~l~~---L~pCl~yvtg~----~--~~P---------s~~CC~~l~~v~~~~~~CLC~~i~~~~~~---~~~lg~--   84 (159)
                      |...+..   |.+|..|+.-.    .  ..|         -..||+.|+.+   ++.|.|..|+.....   ...++-  
T Consensus         5 C~~q~q~~q~L~~C~~yv~qq~~~~~~~~~~~~~~~~~~~~qqCC~qL~~v---~~qCrC~al~~~v~~~~~qgq~~~~~   81 (109)
T 1sm7_A            5 CQREFQQEQHLRACQQWIRQQLAGSPFSENQWGPQQGPSLREQCCNELYQE---DQVCVCPTLKQAAKSVRVQGQHGPFQ   81 (109)
T ss_dssp             HHTTHHHHCCCSSHHHHGGGGTTSSCCCSCSSSCTTCCTTHHHHHHHTTTT---CHHHHTTTTHHHHHTSSCSSCCCTTH
T ss_pred             hHHHHHcCccHHHHHHHHHHHhcCCCcccccccccccHHHHHHHHHHHHhc---CccCCCHHHHHHHHHHHHhcccchHH
Confidence            4444443   88999999731    1  122         36899999985   679999988653210   000110  


Q ss_pred             -cCCHHHHhhhhhcCCCCCCCCCCCCC
Q 031445           85 -NVNQTQAMALPSACNVQTPPVSRCNA  110 (159)
Q Consensus        85 -~in~t~A~~LP~~Cgv~~pp~s~C~~  110 (159)
                       .-...+|..||..||+..+  ..|+-
T Consensus        82 ~~~~~~~a~~LP~~Cnl~~~--~~C~~  106 (109)
T 1sm7_A           82 STRIYQIAKNLPNVCNMKQI--GTCPF  106 (109)
T ss_dssp             HHHHHHTTSSHHHHSCCCSS--CSSCC
T ss_pred             HHHHHHHHHhCHHhcCCCCC--CCCCC
Confidence             0123347789999999743  46763

>1pnb_B Napin BNIB; napin IA and IB, albumin SEED protein, SEED storage protein; NMR {Brassica napus} SCOP: a.52.1.3

Probab=90.14  E-value=0.056  Score=36.23  Aligned_cols=58  Identities=26%  Similarity=0.521  Sum_probs=37.8

Q ss_pred             CCChhhHHHHHhhhccCccccccccccCCCC---CcccCC---cCCHHHHhhhhhcCCCCCCCCCCCCC
Q 031445           48 RPSSSCCSELSNTVKSQPQCLCEVIKGGGSS---ASSLGI---NVNQTQAMALPSACNVQTPPVSRCNA  110 (159)
Q Consensus        48 ~Ps~~CC~~l~~v~~~~~~CLC~~i~~~~~~---~~~lg~---~in~t~A~~LP~~Cgv~~pp~s~C~~  110 (159)
                      ..-..||+.|+.+   ++.|.|..++.....   ...++-   .-...+|..||..||+..+  ..|+-
T Consensus         9 ~~~qqCC~qL~~~---~~~CrC~aL~~~~~~~~~qgq~~~~q~~~~~q~a~~LP~~Cnl~~~--~~C~~   72 (75)
T 1pnb_B            9 WLREQCCNELYQE---DQVCVCPTLKQAAKSVRVQGQHGPFQSTRIYQIAKNLPNVCNMKQI--GTCPF   72 (75)
T ss_dssp             SCTHHHHHHHHTS---CGGGSHHHHHHHHHHHHSGGGCSSCCHHHHHHHCCSCSCSSCCTTT--CCCCC
T ss_pred             HHHHHHHHHHHhC---CcccccHHHHHHHHHHHHHcccchHHHHHHHHHHHhhHHhcCCCCC--CCCCc
Confidence            4568999999985   689999988654210   001111   1124567789999999743  57763

>1s6d_A Albumin 8; all helix, folded LEAF, right-handed superhelix, disulphide rich, plant protein; NMR {Helianthus annuus} SCOP: a.52.1.3

Probab=89.83  E-value=0.2  Score=35.50  Aligned_cols=76  Identities=24%  Similarity=0.470  Sum_probs=51.3

Q ss_pred             CCchhhhc--C-cccchhhhhCCC------------CCCChhhHHHHHhhhccCccccccccccCCCCCccc-CC--cCC
Q 031445           26 SDCNNVLI--S-MSPCLDYITGNS------------SRPSSSCCSELSNTVKSQPQCLCEVIKGGGSSASSL-GI--NVN   87 (159)
Q Consensus        26 ~~C~~~l~--~-L~pCl~yvtg~~------------~~Ps~~CC~~l~~v~~~~~~CLC~~i~~~~~~~~~l-g~--~in   87 (159)
                      ..|...+.  . |.+|..|+.-..            ...-..||+.|+.+   ++.|.|..|+....  ..+ |-  .-.
T Consensus         9 q~C~qq~q~~q~L~~Cq~yv~qq~~~~~~~~~~~~~e~~~qqCC~qL~~~---~~~CrC~al~~~~Q--~q~~g~q~~~~   83 (103)
T 1s6d_A            9 SGCYQQMEEAEMLNHCGMYLMKNLGERSQVSPRMREEDHKQLCCMQLKNL---DEKCMCPAIMMMLN--EPMWIRMRDQV   83 (103)
T ss_dssp             SSHHHHHHHTCSTTHHHHHHTTTTSSCCCCSSSCCCCCCSHHHHHHHHHS---CGGGSSHHHHHHTT--STTCSSTHHHH
T ss_pred             cccHHHHHhChhHHHHHHHHHHHhhccCCcccccccHHHHHHHHHHHHhc---CcccCcHHHHHHHH--HHhcchhHHHH
Confidence            56877763  4 889999997431            12458999999985   68999999865431  022 11  112


Q ss_pred             HHHHhhhhhcCCCCCCCCCCCC
Q 031445           88 QTQAMALPSACNVQTPPVSRCN  109 (159)
Q Consensus        88 ~t~A~~LP~~Cgv~~pp~s~C~  109 (159)
                      ..+|..||..||+.  |. .|+
T Consensus        84 ~q~A~~LP~~C~i~--p~-~C~  102 (103)
T 1s6d_A           84 MSMAHNLPIECNLM--SQ-PCQ  102 (103)
T ss_dssp             HHHHHHHHHHTTSS--SS-CSC
T ss_pred             HHHHHhcHHhcCCC--cc-cCC
Confidence            45688999999996  32 475

>1psy_A 2S albumin, RICC3; albumin SEED protein, SEED storage protein, plant protein; NMR {Ricinus communis} SCOP: a.52.1.3

Probab=89.76  E-value=0.097  Score=38.44  Aligned_cols=72  Identities=28%  Similarity=0.580  Sum_probs=47.5

Q ss_pred             CCchhhh--cCcccchhhhhCCC---C-------CC-----------ChhhHHHHHhhhccCccccccccccCCCC---C
Q 031445           26 SDCNNVL--ISMSPCLDYITGNS---S-------RP-----------SSSCCSELSNTVKSQPQCLCEVIKGGGSS---A   79 (159)
Q Consensus        26 ~~C~~~l--~~L~pCl~yvtg~~---~-------~P-----------s~~CC~~l~~v~~~~~~CLC~~i~~~~~~---~   79 (159)
                      ..|...+  ..|.+|..||.-..   .       .|           -..||+.|+.+   ++.|.|..|+.....   -
T Consensus        16 q~C~~e~qq~~L~~Cq~yv~qq~~~~~~~~~~~~~~~~e~~~qe~~~~qqCC~qL~~~---~~~C~C~aL~~~v~~~~qQ   92 (125)
T 1psy_A           16 QQCRQEVQRKDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQV---RDECQCEAIKYIAEDQIQQ   92 (125)
T ss_dssp             SSHHHHHTTSTTSSHHHHHHSSSCCCCSCSCCCCSSCSSSCSSSCHHHHHHHHHHTTC---CSSHHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHhhHHHHHHHHHHHHhcccCcchhhhcchhhcccccHHHHHHHHHHHHhc---CcccccHHHHHHHHHHHHH
Confidence            4698877  46899999998531   0       12           37899999985   789999988543200   0


Q ss_pred             ccc-CCc--CCHHHHhhhhhcCCC
Q 031445           80 SSL-GIN--VNQTQAMALPSACNV  100 (159)
Q Consensus        80 ~~l-g~~--in~t~A~~LP~~Cgv  100 (159)
                      ..+ +-.  =-..+|..||..||+
T Consensus        93 gq~~gqq~~~~~q~A~~LP~~C~i  116 (125)
T 1psy_A           93 GQLHGEESERVAQRAGEIVSSCGV  116 (125)
T ss_dssp             TTCCTTCSHHHHHHHHHHHHHHTC
T ss_pred             hhhhHHHHHHHHHHHHhhHHHcCC
Confidence            011 111  124567899999999

>1hss_A 0.19 alpha-amylase inhibitor; cereal inhibitor, animal amylase; 2.06A {Triticum aestivum} SCOP: a.52.1.2

Probab=89.76  E-value=0.026  Score=41.65  Aligned_cols=67  Identities=19%  Similarity=0.403  Sum_probs=41.3

Q ss_pred             CcccchhhhhCC---CCCC---ChhhHHHHHhhhccCccccccccccCCCCC-cccC--------Cc-------CCHHHH
Q 031445           34 SMSPCLDYITGN---SSRP---SSSCCSELSNTVKSQPQCLCEVIKGGGSSA-SSLG--------IN-------VNQTQA   91 (159)
Q Consensus        34 ~L~pCl~yvtg~---~~~P---s~~CC~~l~~v~~~~~~CLC~~i~~~~~~~-~~lg--------~~-------in~t~A   91 (159)
                      .|..|..|+...   ...|   -.+||+.|+++   ++.|.|..|....... +..|        -.       +-...|
T Consensus        16 pL~~Cr~Yv~~~C~g~~~p~~~~~~CC~QL~~i---~~~CRC~ALr~m~~~~~~~~g~~~g~~~~e~~pgCrre~~~~~A   92 (124)
T 1hss_A           16 ALPACRPLLRLQCNGSQVPEAVLRDCCQQLAHI---SEWCRCGALYSMLDSMYKEHGAQEGQAGTGAFPRCRREVVKLTA   92 (124)
T ss_dssp             CCTTHHHHHHHHTTTCCCCHHHHHHHHHHHHTS---CTTTHHHHHHHHHHHHHHHC---------CCSTTCCHHHHHHHH
T ss_pred             cchHHHHHHHHHccCCCCcHHHHHHHHHHHHhc---CcccchHHHHHHHHhhhhhhhhhccccchhhccCCcHHHHHHHH
Confidence            466899998632   1113   46899999986   5799998875432100 0001        01       112257


Q ss_pred             hhhhhcCCCCCC
Q 031445           92 MALPSACNVQTP  103 (159)
Q Consensus        92 ~~LP~~Cgv~~p  103 (159)
                      ..||..||+.++
T Consensus        93 ~~LP~~Cnl~~~  104 (124)
T 1hss_A           93 ASITAVCRLPIV  104 (124)
T ss_dssp             TTHHHHTTCCEE
T ss_pred             HhchhhcCCCCC
Confidence            889999999886

>2ds2_B Sweet protein mabinlin-2 chain B; plant protein, SEED storage protein; 1.70A {Capparis masaikai}

Probab=89.10  E-value=0.094  Score=34.96  Aligned_cols=56  Identities=23%  Similarity=0.575  Sum_probs=36.7

Q ss_pred             ChhhHHHHHhhhccCccccccccccCCCCC---cc-cC---CcCCHHHHhhhhhcCCCCCCCCCCCCC
Q 031445           50 SSSCCSELSNTVKSQPQCLCEVIKGGGSSA---SS-LG---INVNQTQAMALPSACNVQTPPVSRCNA  110 (159)
Q Consensus        50 s~~CC~~l~~v~~~~~~CLC~~i~~~~~~~---~~-lg---~~in~t~A~~LP~~Cgv~~pp~s~C~~  110 (159)
                      -..||+.|+.+   ++.|.|..++......   .. ++   ..-...+|..||..||+..+  ..|+-
T Consensus         7 ~qqCC~eL~~~---~~~CrC~aL~~~~~~~~qqgq~~~~qq~~~~~q~a~~LP~~C~l~~~--~~C~~   69 (72)
T 2ds2_B            7 LRQCCNQLRQV---DRPCVCPVLRQAAQQVLQRQIIQGPQQLRRLFDAARNLPNICNIPNI--GACPF   69 (72)
T ss_dssp             HHHHHHHHTTS---CGGGHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCTTC--CCCCC
T ss_pred             HHHHHHHHHhc---CccccCHHHHHHHHHHHHhhhhhchHHHHHHHHHHHhhHHhcCCCCC--CcCCC
Confidence            36899999985   7899999887543100   00 11   01235678899999999643  46763

>2lvf_A 2S albumin; allergen, copper binding, hydrophobic interaction; NMR {Bertholletia excelsa}

Probab=87.35  E-value=0.058  Score=39.00  Aligned_cols=79  Identities=25%  Similarity=0.535  Sum_probs=48.4

Q ss_pred             CCchhhhc---CcccchhhhhC----CC--CCCC-------hhhHHHHHhhhccCccccccccccCCCCCc-ccC-Cc--
Q 031445           26 SDCNNVLI---SMSPCLDYITG----NS--SRPS-------SSCCSELSNTVKSQPQCLCEVIKGGGSSAS-SLG-IN--   85 (159)
Q Consensus        26 ~~C~~~l~---~L~pCl~yvtg----~~--~~Ps-------~~CC~~l~~v~~~~~~CLC~~i~~~~~~~~-~lg-~~--   85 (159)
                      ..|...+.   +|..|..||.-    ..  ..+.       ..||+.|+.+   ++.|.|..|+....+.. ..+ +.  
T Consensus         6 q~C~~q~q~~~~L~~Cq~yv~qq~~~~~~~~~~~~~~~~~l~~CC~qL~qv---~~~CrC~aL~~~v~~~~qq~~~~~~~   82 (114)
T 2lvf_A            6 EECREQMQRQQMLSHCRMYMRQQMEESTYQTMPRRGMEPHMSECCEQLEGM---DESCRCEGLRMMMRMMQQKEMQPRGE   82 (114)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHHTTTTCSCCSSSCCHHHHHHHHHHHHS---CHHHHHHHHHHHHHHHHHHHCCCCSH
T ss_pred             HhhHHHHHHhHhHHHHHHHHHHHHhccCCccccccchHHHHHHHHHHHHHC---CcCccCHHHHHHHHHHHHHHhhhhhh
Confidence            34665432   47899999872    11  1111       4599999996   78999998865322000 001 00  


Q ss_pred             -C--CHHHHhhhhhcCCCCCCCCCCCCC
Q 031445           86 -V--NQTQAMALPSACNVQTPPVSRCNA  110 (159)
Q Consensus        86 -i--n~t~A~~LP~~Cgv~~pp~s~C~~  110 (159)
                       +  -...|..||..||+.  | ..|.-
T Consensus        83 ~~~~~~q~A~~LP~~C~i~--p-~~C~f  107 (114)
T 2lvf_A           83 QMRRMMRLAENIPSRCNLS--P-MRCPM  107 (114)
T ss_dssp             HHHHHHHHHHHHHHHHCCC--C-SCCTT
T ss_pred             HHHHHHHHHHhChHhcCCC--c-ccCCC
Confidence             0  134688999999997  3 57875

>1bea_A Bifunctional amylase/serine protease inhibitor; amylase/protease bifunctional inhibitor; 1.95A {Zea mays} SCOP: a.52.1.2 PDB: 1bfa_A

Probab=85.87  E-value=0.36  Score=35.60  Aligned_cols=75  Identities=24%  Similarity=0.468  Sum_probs=46.0

Q ss_pred             CcccchhhhhCC----CC-CC----ChhhHHHHHhhhccCccccccccccCCCCC--c----c-cCC--cC-------CH
Q 031445           34 SMSPCLDYITGN----SS-RP----SSSCCSELSNTVKSQPQCLCEVIKGGGSSA--S----S-LGI--NV-------NQ   88 (159)
Q Consensus        34 ~L~pCl~yvtg~----~~-~P----s~~CC~~l~~v~~~~~~CLC~~i~~~~~~~--~----~-lg~--~i-------n~   88 (159)
                      .|..|.+|+...    .+ .|    -..||+.|+++   .+.|.|..|.....+.  .    . -|.  .+       -.
T Consensus        16 pL~~CR~Yv~~q~C~~g~~~p~e~~~~~CC~QL~~i---~~~CRC~ALr~m~~~~~~~~~~~~~~G~~~~~pgC~re~~~   92 (127)
T 1bea_A           16 PLPSCRWYVTSRTCGIGPRLPWPELKRRCCRELADI---PAYCRCTALSILMDGAIPPGPDAQLEGRLEDLPGCPREVQR   92 (127)
T ss_dssp             CCHHHHHHHHHHHHSCCCSSCHHHHHHHHHHHHHTS---CGGGHHHHHHHHHHCBCCCSSSCCCBCCCCCBTTBCHHHHH
T ss_pred             cchHHHHHHHHhhcccCCCCchHHHHHHHHHHHHhc---CcccchHHHHHHHHhhhcccccccccccccccCCCcHHHHH
Confidence            466899999632    22 23    35699999996   5799998875422100  0    0 011  11       13


Q ss_pred             HHHhhh--hhcCCCCCCCCC-CCCCC
Q 031445           89 TQAMAL--PSACNVQTPPVS-RCNAA  111 (159)
Q Consensus        89 t~A~~L--P~~Cgv~~pp~s-~C~~~  111 (159)
                      ..|..|  |..||+.+++.+ .|...
T Consensus        93 ~~A~~Lv~P~~Cnl~~~~g~~~C~~~  118 (127)
T 1bea_A           93 GFAATLVTEAECNLATISGVAECPWI  118 (127)
T ss_dssp             HHHTTTTSTTTTCCCCTTSSSCCTTT
T ss_pred             HHHHhcCCcccCCCCCCCCCCCCCcc
Confidence            357889  999999887433 67653

>1w2q_A Conglutin, ARA H 6; allergen, allergene; NMR {Arachis hypogaea}

Probab=84.13  E-value=0.39  Score=35.29  Aligned_cols=82  Identities=26%  Similarity=0.632  Sum_probs=53.1

Q ss_pred             CCchhhh--cCcccchhhhhCCC--C--------CC-------ChhhHHHHHhhhccCccccccccccCC-CCCccc-CC
Q 031445           26 SDCNNVL--ISMSPCLDYITGNS--S--------RP-------SSSCCSELSNTVKSQPQCLCEVIKGGG-SSASSL-GI   84 (159)
Q Consensus        26 ~~C~~~l--~~L~pCl~yvtg~~--~--------~P-------s~~CC~~l~~v~~~~~~CLC~~i~~~~-~~~~~l-g~   84 (159)
                      ..|...+  ..|.+|..|+.-..  .        ..       -..||+.|+.+. +++.|.|..|+... ....-+ +-
T Consensus        14 qqC~qq~q~~qL~~Cq~yl~q~~~~~~~~~~~~~~~~~~~e~~lqqCC~qL~q~~-~~~qCrCeaL~q~~Q~qq~q~~gq   92 (127)
T 1w2q_A           14 SSCERQVDRVNLKPCEQHIMQRIMGEQEQYDSYDIRSTRSSDQQQRCCDELNEME-NTQGCMCEALQQIMENQCDRLQDR   92 (127)
T ss_dssp             CCHHHHHTTCCCHHHHHHHHTGGGSSSSSCSCCCTTSCCHHHHHHHHHHHHHHTS-CCCTTHHHHHHHHHHHSCTTTTTS
T ss_pred             cccHHHHHHhhHHHHHHHHHHHHhhccCCccchhhcccccHHHHHHHHHHHHhhc-cCCCccCHHHHHHHHHHHhhhhhH
Confidence            5688766  36889999998531  0        11       378999999853 46899999987543 000011 11


Q ss_pred             cCC---HHHHhhhhhcCCCCCCCCCCCCC
Q 031445           85 NVN---QTQAMALPSACNVQTPPVSRCNA  110 (159)
Q Consensus        85 ~in---~t~A~~LP~~Cgv~~pp~s~C~~  110 (159)
                      ...   ..+|..||..||+.-|  ..|+-
T Consensus        93 q~~~~~~q~A~~LP~~C~i~~~--~~C~~  119 (127)
T 1w2q_A           93 QMVQQFKRELMSLPQQCNFRAP--QRCDL  119 (127)
T ss_dssp             TTHHHHHHHHHHHHHHHTCCCS--SCCSC
T ss_pred             HHHHHHHHHHHHhHHhcCCCCC--CcCCC
Confidence            222   3568899999999533  46764

>1b1u_A Protein (alpha-amylase/trypsin inhibitor RATI); bifunctional, hydrolase inhibitor; 2.20A {Eleusine coracana} SCOP: a.52.1.2 PDB: 1bip_A 1tmq_B

Probab=83.58  E-value=0.28  Score=35.97  Aligned_cols=73  Identities=21%  Similarity=0.432  Sum_probs=44.8

Q ss_pred             CcccchhhhhCC----CC-CC----ChhhHHHHHhhhccCccccccccccCCCCC-----cccC--Cc-C-------CHH
Q 031445           34 SMSPCLDYITGN----SS-RP----SSSCCSELSNTVKSQPQCLCEVIKGGGSSA-----SSLG--IN-V-------NQT   89 (159)
Q Consensus        34 ~L~pCl~yvtg~----~~-~P----s~~CC~~l~~v~~~~~~CLC~~i~~~~~~~-----~~lg--~~-i-------n~t   89 (159)
                      .|..|.+|+...    .+ .|    -.+||+.|+++   ++.|.|..|.......     ...|  +. +       -..
T Consensus        16 ~L~~Cr~Yv~~q~C~~g~~~p~~~~~~~CC~QL~~i---~~~CRC~ALr~m~~~~~~~~g~~~g~~~~~~pgC~re~~~~   92 (122)
T 1b1u_A           16 PLDSCRWYVSTRTCGVGPRLATQEMKARCCRQLEAI---PAYCRCEAVRILMDGVVTPSGQHEGRLLQDLPGCPRQVQRA   92 (122)
T ss_dssp             TTTHHHHHHHHHHHCCCCSSCHHHHHHHHHHHHHHS---CHHHHHHHHHHHHTCEECTTSCEECCCCCCCTTCCHHHHHH
T ss_pred             cchHHHHHHHHhcccCCCCCchHHHHHHHHHHHHhC---CccccHHHHHHHHHhhhhhhcccccccchhccCCcHHHHHH
Confidence            477899999633    12 23    45799999996   5899998875432100     0001  01 1       113


Q ss_pred             HHhhh--hhcCCCCCCCCC-CCC
Q 031445           90 QAMAL--PSACNVQTPPVS-RCN  109 (159)
Q Consensus        90 ~A~~L--P~~Cgv~~pp~s-~C~  109 (159)
                      .|..|  |..||+.+++.+ .|.
T Consensus        93 ~A~~Lv~P~~Cnl~~~~g~~~C~  115 (122)
T 1b1u_A           93 FAPKLVTEVECNLATIHGGPFCL  115 (122)
T ss_dssp             HGGGTTSTTTTCCCCTTSSSCCS
T ss_pred             HHHhcCCcccCCCCCCCCCcccc
Confidence            57789  999999987432 554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	159
d1mida_	91	a.52.1.1 (A:) Plant non-specific lipid-transfer pr	2e-15
d1fk5a_	93	a.52.1.1 (A:) Plant non-specific lipid-transfer pr	4e-15
d1l6ha_	69	a.52.1.1 (A:) Non-specific lipid-transfer protein	6e-05
g1pnb.1	106	a.52.1.3 (A:,B:) Napin BNIb {Rape (Brassica napus)	9e-05
d1tuka1	67	a.52.1.1 (A:1-67) Non-specific lipid-transfer prot	1e-04

>d1mida_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 91

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1)
species: Barley (Hordeum vulgare) [TaxId: 4513]

 Score = 65.2 bits (159), Expect = 2e-15
 Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 10/82 (12%)

Query: 27  DCNNVLISMSPCLDYITGNSSRPSSSCCS---ELSNTVKSQP--QCLCEVIKGGGSSASS 81
           +C  V   M PCL Y+ G    PS  CC+   +L N  +S    Q +C  +KG     + 
Sbjct: 2   NCGQVDSKMKPCLTYVQGGPG-PSGECCNGVRDLHNQAQSSGDRQTVCNCLKG----IAR 56

Query: 82  LGINVNQTQAMALPSACNVQTP 103
              N+N   A ++PS CNV  P
Sbjct: 57  GIHNLNLNNAASIPSKCNVNVP 78

>d1fk5a_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Maize (Zea mays) [TaxId: 4577]} Length = 93

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1)
species: Maize (Zea mays) [TaxId: 4577]

 Score = 64.9 bits (158), Expect = 4e-15
 Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 9/82 (10%)

Query: 27  DCNNVLISMSPCLDYITGNSSRPSSSCCSELSNTV-----KSQPQCLCEVIKGGGSSASS 81
            C  V  +++PC+ Y  G  S PS+ CCS + +        +  +  C  +K   +    
Sbjct: 3   SCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAG--- 59

Query: 82  LGINVNQTQAMALPSACNVQTP 103
               +N   A ++PS C V  P
Sbjct: 60  -VSGLNAGNAASIPSKCGVSIP 80

>d1l6ha_ a.52.1.1 (A:) Non-specific lipid-transfer protein homologue (ns-LTP2) {Rice (Oryza sativa) [TaxId: 4530]} Length = 69

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Non-specific lipid-transfer protein homologue (ns-LTP2)
species: Rice (Oryza sativa) [TaxId: 4530]

 Score = 37.1 bits (86), Expect = 6e-05
 Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 10/69 (14%)

Query: 35  MSPCLDYITGNSSRPSSSCCSELSNTVKSQPQCLCEVIKGGGSSASSLGINVNQTQAMAL 94
           ++ C   I G  +RP+++CCS L    ++Q  C C+  K         G  VN   A   
Sbjct: 8   LTVCTGAIAG-GARPTAACCSSL----RAQQGCFCQFAKD-----PRYGRYVNSPNARKA 57

Query: 95  PSACNVQTP 103
            S+C +  P
Sbjct: 58  VSSCGIALP 66

>d1tuka1 a.52.1.1 (A:1-67) Non-specific lipid-transfer protein homologue (ns-LTP2) {Triticum turgidum [TaxId: 4571]} Length = 67

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Non-specific lipid-transfer protein homologue (ns-LTP2)
species: Triticum turgidum [TaxId: 4571]

 Score = 36.7 bits (85), Expect = 1e-04
 Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 10/69 (14%)

Query: 35  MSPCLDYITGNSSRPSSSCCSELSNTVKSQPQCLCEVIKGGGSSASSLGINVNQTQAMAL 94
           ++ C   I    ++PS  CC  L    ++Q  C C+  K       + G  +    A   
Sbjct: 7   LAVCASAILS-GAKPSGECCGNL----RAQQGCFCQYAKD-----PTYGQYIRSPHARDT 56

Query: 95  PSACNVQTP 103
            ++C +  P
Sbjct: 57  LTSCGLAVP 65

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	159
d1fk5a_	93	Plant non-specific lipid-transfer protein (ns-LTP,	99.72
d1mida_	91	Plant non-specific lipid-transfer protein (ns-LTP,	99.68
d1tuka1	67	Non-specific lipid-transfer protein homologue (ns-	99.13
d1l6ha_	69	Non-specific lipid-transfer protein homologue (ns-	99.07
d1hypa_	75	Soybean hydrophobic protein {Soybean (Glycine max)	95.5
g1pnb.1	106	Napin BNIb {Rape (Brassica napus) [TaxId: 3708]}	95.15
d1s6da_	103	Methionine-rich 2S protein (albumin 8) {Common sun	93.75
d1psya_	125	2S albumin RicC3 {Castor bean (Ricinus communis) [	93.03

>d1fk5a_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Maize (Zea mays) [TaxId: 4577]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1)
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.72  E-value=3.7e-19  Score=125.02  Aligned_cols=83  Identities=27%  Similarity=0.659  Sum_probs=70.4

Q ss_pred             CCchhhhcCcccchhhhhCCCCCCChhhHHHHHhhhc-----cCccccccccccCCCCCcccCCcCCHHHHhhhhhcCCC
Q 031445           26 SDCNNVLISMSPCLDYITGNSSRPSSSCCSELSNTVK-----SQPQCLCEVIKGGGSSASSLGINVNQTQAMALPSACNV  100 (159)
Q Consensus        26 ~~C~~~l~~L~pCl~yvtg~~~~Ps~~CC~~l~~v~~-----~~~~CLC~~i~~~~~~~~~lg~~in~t~A~~LP~~Cgv  100 (159)
                      .+|.+++..|.||++|++|++..|++.||++++++.+     .+++|+|+++++...   . ..+||.+|+.+||++||+
T Consensus         2 i~C~~v~~~l~pCl~Yltg~~~~Ps~~CC~gv~~l~~~a~t~~dr~~lC~cl~~~~~---~-~~~in~~ra~~LP~~C~v   77 (93)
T d1fk5a_           2 ISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAA---G-VSGLNAGNAASIPSKCGV   77 (93)
T ss_dssp             CCHHHHHHHHGGGHHHHTTCSSSCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHH---T-CTTCCHHHHHHHHHHTTC
T ss_pred             CCHHHHHHHhhhhHHHHhCCCCCCCCchhHHHHHHHHHccCCccHHHHHHhhhhccc---c-cCCcCHHHHHhhhHhcCC
Confidence            5799999999999999999988899999999998864     356899999987643   2 347999999999999999


Q ss_pred             CCC----CCCCCCCCC
Q 031445          101 QTP----PVSRCNAAS  112 (159)
Q Consensus       101 ~~p----p~s~C~~~~  112 (159)
                      ++|    |.++|+.++
T Consensus        78 ~l~~pis~~~dCs~i~   93 (93)
T d1fk5a_          78 SIPYTISTSTDCSRVN   93 (93)
T ss_dssp             CCSSCCSTTCCGGGCC
T ss_pred             CCCCCCCCCCCCCcCC
Confidence            887    567898653

>d1mida_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Barley (Hordeum vulgare) [TaxId: 4513]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1)
species: Barley (Hordeum vulgare) [TaxId: 4513]

Probab=99.68  E-value=2e-18  Score=120.84  Aligned_cols=80  Identities=34%  Similarity=0.732  Sum_probs=67.5

Q ss_pred             CchhhhcCcccchhhhhCCCCCCChhhHHHHHhhhc-----cCccccccccccCCCCCcccCCcCCHHHHhhhhhcCCCC
Q 031445           27 DCNNVLISMSPCLDYITGNSSRPSSSCCSELSNTVK-----SQPQCLCEVIKGGGSSASSLGINVNQTQAMALPSACNVQ  101 (159)
Q Consensus        27 ~C~~~l~~L~pCl~yvtg~~~~Ps~~CC~~l~~v~~-----~~~~CLC~~i~~~~~~~~~lg~~in~t~A~~LP~~Cgv~  101 (159)
                      +|.+++..|+||++|++|+ ..|++.||++++++.+     .+++|+|+++++...   . ..+||.+||.+||++||++
T Consensus         2 ~C~~v~~~l~pCl~Yl~g~-~~P~~~CC~gv~~L~~~a~t~~d~~~lC~cl~~~~~---~-~~~in~~ra~~LP~~C~v~   76 (91)
T d1mida_           2 NCGQVDSKMKPCLTYVQGG-PGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIAR---G-IHNLNLNNAASIPSKCNVN   76 (91)
T ss_dssp             CHHHHHHHHGGGHHHHTTC-SCCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHH---T-CTTCCHHHHHHHHHHTTCC
T ss_pred             CHHHHHHHHHhhHHHHcCC-CCCCcchhhhHHHHHHHhcCCCcHHHHHHhhhhhcc---c-CCCcCHHHHHhchHhcCCC
Confidence            6999999999999999987 4699999999998864     246899999987643   2 3479999999999999999


Q ss_pred             CC----CCCCCCCC
Q 031445          102 TP----PVSRCNAA  111 (159)
Q Consensus       102 ~p----p~s~C~~~  111 (159)
                      +|    |.++|+++
T Consensus        77 ~p~pis~~~dC~~i   90 (91)
T d1mida_          77 VPYTISPDIDCSRI   90 (91)
T ss_dssp             CCSCCCTTCCGGGC
T ss_pred             CCCCCCCCCCCCCC
Confidence            88    55689865

>d1tuka1 a.52.1.1 (A:1-67) Non-specific lipid-transfer protein homologue (ns-LTP2) {Triticum turgidum [TaxId: 4571]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Non-specific lipid-transfer protein homologue (ns-LTP2)
species: Triticum turgidum [TaxId: 4571]

Probab=99.13  E-value=7.4e-12  Score=82.40  Aligned_cols=64  Identities=25%  Similarity=0.640  Sum_probs=55.6

Q ss_pred             chhhhcCcccchhhhhCCCCCCChhhHHHHHhhhccCccccccccccCCCCCcccCCcCCHHHHhhhhhcCCCCCC
Q 031445           28 CNNVLISMSPCLDYITGNSSRPSSSCCSELSNTVKSQPQCLCEVIKGGGSSASSLGINVNQTQAMALPSACNVQTP  103 (159)
Q Consensus        28 C~~~l~~L~pCl~yvtg~~~~Ps~~CC~~l~~v~~~~~~CLC~~i~~~~~~~~~lg~~in~t~A~~LP~~Cgv~~p  103 (159)
                      |+..  +|.||++.++++. .||..||+-|++    |..|||+|++++.     +...||..+|.++.+.|||++|
T Consensus         2 C~p~--~L~~C~~Ai~~g~-~PS~~CC~kLke----Q~~ClC~Y~kdP~-----~~~yv~spnarkv~~aCgvp~P   65 (67)
T d1tuka1           2 CQAS--QLAVCASAILSGA-KPSGECCGNLRA----QQGCFCQYAKDPT-----YGQYIRSPHARDTLTSCGLAVP   65 (67)
T ss_dssp             CCGG--GGGGGHHHHHHCC-CCCHHHHHHHHH----HGGGHHHHTTCTT-----THHHHTSHHHHHHHHHTTCCCC
T ss_pred             CChh--hccccHHHHhcCC-CCcHHHHHHHHh----cCCccceecCCcc-----HHHHcCCHHHHHHHHhcCCCCC
Confidence            5555  7999999999875 699999999997    5689999999874     4457899999999999999987

>d1l6ha_ a.52.1.1 (A:) Non-specific lipid-transfer protein homologue (ns-LTP2) {Rice (Oryza sativa) [TaxId: 4530]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Non-specific lipid-transfer protein homologue (ns-LTP2)
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=99.07  E-value=6.8e-12  Score=83.03  Aligned_cols=65  Identities=34%  Similarity=0.724  Sum_probs=56.3

Q ss_pred             CchhhhcCcccchhhhhCCCCCCChhhHHHHHhhhccCccccccccccCCCCCcccCCcCCHHHHhhhhhcCCCCCC
Q 031445           27 DCNNVLISMSPCLDYITGNSSRPSSSCCSELSNTVKSQPQCLCEVIKGGGSSASSLGINVNQTQAMALPSACNVQTP  103 (159)
Q Consensus        27 ~C~~~l~~L~pCl~yvtg~~~~Ps~~CC~~l~~v~~~~~~CLC~~i~~~~~~~~~lg~~in~t~A~~LP~~Cgv~~p  103 (159)
                      .|+..  +|.||++.++++. .||..||+.|++    |..|||+|++++.     ++..||..+|.++...|||++|
T Consensus         2 ~C~p~--~L~~C~~ai~~g~-~PS~~CC~kLke----Q~~ClC~Y~k~P~-----~~~yv~spnarkv~~aCgvp~P   66 (69)
T d1l6ha_           2 GCNAG--QLTVCTGAIAGGA-RPTAACCSSLRA----QQGCFCQFAKDPR-----YGRYVNSPNARKAVSSCGIALP   66 (69)
T ss_dssp             CSTTT--THHHHHHHHTTCC-STTHHHHHHHHH----HHHHHHHHTTCSS-----HHHHTTTTTGGGCCCCCSSCSC
T ss_pred             CCChh--hccccHHHHhCCC-CCcHHHHHHHHh----cCCccceeccCcc-----HHHHcCCHHHHHHHHhcCCCCC
Confidence            37766  7999999999875 599999999997    5589999999874     4557899999999999999987

>d1hypa_ a.52.1.1 (A:) Soybean hydrophobic protein {Soybean (Glycine max) [TaxId: 3847]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Soybean hydrophobic protein
species: Soybean (Glycine max) [TaxId: 3847]

Probab=95.50  E-value=0.004  Score=40.63  Aligned_cols=68  Identities=22%  Similarity=0.557  Sum_probs=47.7

Q ss_pred             CcccchhhhhCCCCCCChhhHHHHHhhhccC-ccccccccccCCCCCcccCCcCCHHHHhh-hhhcCCCCCCCCCCCCC
Q 031445           34 SMSPCLDYITGNSSRPSSSCCSELSNTVKSQ-PQCLCEVIKGGGSSASSLGINVNQTQAMA-LPSACNVQTPPVSRCNA  110 (159)
Q Consensus        34 ~L~pCl~yvtg~~~~Ps~~CC~~l~~v~~~~-~~CLC~~i~~~~~~~~~lg~~in~t~A~~-LP~~Cgv~~pp~s~C~~  110 (159)
                      +|.-|.+-+.+.. .+.++||.-++.+++-+ ..|||..++...       + +|....+. |-+.||-..|+.++|.+
T Consensus         5 Klg~C~nvLg~~~-~~~~~CC~Ll~GL~dleAAvCLCtaika~~-------l-lnvpv~l~llln~Cgk~~P~gF~CP~   74 (75)
T d1hypa_           5 DLSICLNILGGSL-GTVDDCCALIGGLGDIEAIVCLCIQLRALG-------I-LNLNRNLQLILNSCGRSYPSNATCPR   74 (75)
T ss_dssp             CCGGGGGGGGTCC-TTHHHHHHHHHTSCHHHHHHHHHHHHHHHT-------C-SCHHHHHHHHHHHTTCSSCCCCCCSC
T ss_pred             chhhHHHHhcCcc-CCCCCcchHHhhHHHHHHHHHHHHHHHHhh-------h-ccccchHHHHHHHcCCcCcCCCcCCC
Confidence            3556777665543 46789999999887544 379999988532       2 44444443 55789999999999975

>d1s6da_ a.52.1.3 (A:) Methionine-rich 2S protein (albumin 8) {Common sunflower (Helianthus annuus) [TaxId: 4232]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Seed storage protein, 2S albumin
domain: Methionine-rich 2S protein (albumin 8)
species: Common sunflower (Helianthus annuus) [TaxId: 4232]

Probab=93.75  E-value=0.016  Score=39.82  Aligned_cols=73  Identities=23%  Similarity=0.424  Sum_probs=48.9

Q ss_pred             CCchhhh---cCcccchhhhhCCC-----C-------CCChhhHHHHHhhhccCccccccccccCCCCCcccC-CcCCHH
Q 031445           26 SDCNNVL---ISMSPCLDYITGNS-----S-------RPSSSCCSELSNTVKSQPQCLCEVIKGGGSSASSLG-INVNQT   89 (159)
Q Consensus        26 ~~C~~~l---~~L~pCl~yvtg~~-----~-------~Ps~~CC~~l~~v~~~~~~CLC~~i~~~~~~~~~lg-~~in~t   89 (159)
                      ..|...+   ..|..|..||....     .       .-=..||+.|+.+   ++.|.|..|.....+...-+ ..--..
T Consensus         9 q~C~~q~q~qq~L~~Cq~Yl~q~~~~~~~~~~~~~~e~~~~~CC~qL~q~---~~~CrC~~L~~avq~q~~q~~~~~~~q   85 (103)
T d1s6da_           9 SGCYQQMEEAEMLNHCGMYLMKNLGERSQVSPRMREEDHKQLCCMQLKNL---DEKCMCPAIMMMLNEPMWIRMRDQVMS   85 (103)
T ss_dssp             SSHHHHHHHTCSTTHHHHHHTTTTSSCCCCSSSCCCCCCSHHHHHHHHHS---CGGGSSHHHHHHTTSTTCSSTHHHHHH
T ss_pred             ccCHHHHHHhHhHHHHHHHHHHHHhccCCCCCccCchHHHHHHHHHHHcC---CCCCcCHHHHHHHHHHHhHHHHHHHHH
Confidence            5687554   36899999996421     1       1237899999985   88999998876543111111 111245


Q ss_pred             HHhhhhhcCCCC
Q 031445           90 QAMALPSACNVQ  101 (159)
Q Consensus        90 ~A~~LP~~Cgv~  101 (159)
                      .|.+||..||+.
T Consensus        86 ~Ak~LPs~C~i~   97 (103)
T d1s6da_          86 MAHNLPIECNLM   97 (103)
T ss_dssp             HHHHHHHHTTSS
T ss_pred             HHHhChHhcCCC
Confidence            688999999997

>d1psya_ a.52.1.3 (A:) 2S albumin RicC3 {Castor bean (Ricinus communis) [TaxId: 3988]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Seed storage protein, 2S albumin
domain: 2S albumin RicC3
species: Castor bean (Ricinus communis) [TaxId: 3988]

Probab=93.03  E-value=0.0066  Score=43.07  Aligned_cols=74  Identities=24%  Similarity=0.512  Sum_probs=48.1

Q ss_pred             CCchhhhc--CcccchhhhhCCCC-----CC-----C-----------hhhHHHHHhhhccCccccccccccCCCCCc--
Q 031445           26 SDCNNVLI--SMSPCLDYITGNSS-----RP-----S-----------SSCCSELSNTVKSQPQCLCEVIKGGGSSAS--   80 (159)
Q Consensus        26 ~~C~~~l~--~L~pCl~yvtg~~~-----~P-----s-----------~~CC~~l~~v~~~~~~CLC~~i~~~~~~~~--   80 (159)
                      ..|...+.  .|..|..||.-...     .+     .           ..||+.|+.+   ++.|.|..|+......+  
T Consensus        16 q~Crqe~q~q~L~sCq~Yl~qq~~~~~~~~~~~~~~~~~~~~~e~~~l~qCC~qL~q~---~~~CrC~~l~~~v~~~~qq   92 (125)
T d1psya_          16 QQCRQEVQRKDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQV---RDECQCEAIKYIAEDQIQQ   92 (125)
T ss_dssp             SSHHHHHTTSTTSSHHHHHHSSSCCCCSCSCCCCSSCSSSCSSSCHHHHHHHHHHTTC---CSSHHHHHHHHHHHHHHHH
T ss_pred             ccCHHHHHhhhHHHHHHHHHHHHhccCCCCcccccccccccccccHHHHHHHHHHHhC---CcCCcCHHHHHHHHHHHHH
Confidence            56877543  68999999985421     01     0           4799999985   78999998865321000  


Q ss_pred             --ccCCcC--CHHHHhhhhhcCCCCC
Q 031445           81 --SLGINV--NQTQAMALPSACNVQT  102 (159)
Q Consensus        81 --~lg~~i--n~t~A~~LP~~Cgv~~  102 (159)
                        ..+..+  -..+|..||..||+..
T Consensus        93 ~~~~~~~~~~~~q~Ak~LPs~C~i~~  118 (125)
T d1psya_          93 GQLHGEESERVAQRAGEIVSSCGVRC  118 (125)
T ss_dssp             TTCCTTCSHHHHHHHHHHHHHHTCST
T ss_pred             HHHHHHHHHHHHHHHHhChhhcCCcc
Confidence              011111  1567899999999985