Citrus Sinensis ID: 031446

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------16
Protein Sequence
MLFFEKDKPVIPPVQPNVGLDMVLKHMIQYVEKTARRGSIKLFRTQSPRHFEGGDWDQGGSCQRLQPLLPEQVEELFSVQNNGTNVEARLVNQHLYKALKGSDFQILDITHMSEFRADAHPSTAGGKKHNDCMHWCLPGITDTWNDLFVTLLNNVKVRT
Secondary Structure (PSIPRED)
cEEEEccccccccccHHHHHHHHHHHHHHHHHHHcccccEEEEEEccccccccccccccccccccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccEEEEEcccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cEEEEccccEcccccHHHHHHHHHHHHHHHHHHccccccEEEEEEccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccEEEEEEHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
mlffekdkpvippvqpnvgLDMVLKHMIQYVEKTARrgsiklfrtqsprhfeggdwdqggscqrlqpllpEQVEELFSVQNNGTNVEARLVNQHLYKalkgsdfqildithmsefradahpstaggkkhndcmhwclpgitdTWNDLFVTLLNNVKVRT
Flexible Loop (DISEMBL)
mlffekdkpvippvqpnvgldMVLKHMIQYVEKTARRGSIKLFRTQSPRHFEGGDWDQGGSCQRLQPLLPEQVEELFSVQNNGTNVEARLVNQHLYKALKGSDFQILDITHMSEFRADAHPSTAGGKKHNDCMHWCLPGITDTWNDLFVTLLNNVKVRT
Low Complexity Region (SEG)
MLFFEKDKPVIPPVQPNVGLDMVLKHMIQYVEKTARRGSIKLFRTQSPRHFEGGDWDQGGSCQRlqpllpeqveelFSVQNNGTNVEARLVNQHLYKALKGSDFQILDITHMSEFRADAHPSTAGGKKHNDCMHWCLPGITDTWNDLFVTLLNNVKVRT
Disordered region (IsUnstruct)
**********I*PVQPNVGLDMVLKHMIQYVEKTARRGSIKLFRTQ***HFEGGDWDQGGSCQRLQPLLPEQVEELFSVQNNGTNVEARLVNQHLYKALKGSDFQILDITHMSEFRA**********KHNDCMHWCLPGITDTWNDLFVTLLNNV****
Disordered Region (DISOPRED)
MLFFEKDKPVIPPVQPNVGLDMVLKHMIQYVEKTARRGSIKLFRTQSPRHFEGGDWDQGGSCQRLQPLLPEQVEELFSVQNNGTNVEARLVNQHLYKALKGSDFQILDITHMSEFRADAHPSTAGGKKHNDCMHWCLPGITDTWNDLFVTLLNNV****
Disordered Region (DISEMBL)
MLFFEKDKPVIPPVQPNVGLDMVLKHMIQYVEKTARRGSIKLFRTQSPRHFEGGDWDQGGSCQRLQPLLPEQVEELFSVQNNGTNVEARLVNQHLYKALKGSDFQILDITHMSEFRAD**********HNDCMHWCLPGITDTWNDLFVTLLNNVKVRT
Disordered Region (DISPRO)
MLFFEKDKPVIPPVQPNVGLDMVLKHMIQYVEKTARRGSIKLFRTQSPRHFEGGDWDQGGSCQRLQPLLPEQVEELFSVQNNGTNVEARLVNQHLYKALKGSDFQILDITHMSEFRADAHPSTAGGKKHNDCMHWCLPGITDTWNDLFVTLLNNV****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLFFEKDKPVIPPVQPNVGLDMVLKHMIQYVEKTARRGSIKLFRTQSPRHFEGGDWDQGGSCQRLQPLLPEQVEELFSVQNNGTNVEARLVNQHLYKALKGSDFQILDITHMSEFRADAHPSTAGGKKHNDCMHWCLPGITDTWNDLFVTLLNNVKVRT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	159
224105809	407	predicted protein [Populus trichocarpa]	0.993	0.388	0.784	1e-71
297736366	315	unnamed protein product [Vitis vinifera]	0.993	0.501	0.791	1e-71
359475560	407	PREDICTED: uncharacterized protein LOC10	0.993	0.388	0.791	3e-71
356521269	410	PREDICTED: uncharacterized protein LOC10	0.968	0.375	0.785	6e-69
388518747	159	unknown [Medicago truncatula]	1.0	1.0	0.754	1e-67
147858857	422	hypothetical protein VITISV_006073 [Viti	0.993	0.374	0.791	2e-67
15225951	412	trichome birefringence-like 13 protein [	0.987	0.381	0.708	3e-64
255562098	410	conserved hypothetical protein [Ricinus	0.993	0.385	0.765	4e-63
242050282	407	hypothetical protein SORBIDRAFT_02g03380	0.981	0.383	0.685	5e-60
297831908	411	hypothetical protein ARALYDRAFT_480347 [	0.981	0.379	0.719	8e-60

>gi|224105809|ref|XP_002313938.1| predicted protein [Populus trichocarpa] gi|222850346|gb|EEE87893.1| predicted protein [Populus trichocarpa]

 Score =  274 bits (700), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 124/158 (78%), Positives = 142/158 (89%)

Query: 1   MLFFEKDKPVIPPVQPNVGLDMVLKHMIQYVEKTARRGSIKLFRTQSPRHFEGGDWDQGG 60
           MLFFEK++P+IPPV P VGLD VLKH+I +VE+  R G IKLFRTQSPRHFEGGDWDQGG
Sbjct: 249 MLFFEKNQPLIPPVLPAVGLDKVLKHVILFVERRMRPGGIKLFRTQSPRHFEGGDWDQGG 308

Query: 61  SCQRLQPLLPEQVEELFSVQNNGTNVEARLVNQHLYKALKGSDFQILDITHMSEFRADAH 120
           SC RLQPL PE+VEELFS++NNGTNVE+RLVNQHL+KALKGS F +LDITHMSEFRADAH
Sbjct: 309 SCPRLQPLSPEKVEELFSLKNNGTNVESRLVNQHLFKALKGSTFHVLDITHMSEFRADAH 368

Query: 121 PSTAGGKKHNDCMHWCLPGITDTWNDLFVTLLNNVKVR 158
           P+TAGGKKH+DCMHWCLPG+TD WNDLF+  LN++K R
Sbjct: 369 PATAGGKKHDDCMHWCLPGVTDIWNDLFIMHLNSIKAR 406

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297736366|emb|CBI25089.3| unnamed protein product [Vitis vinifera]

 Score =  274 bits (700), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 125/158 (79%), Positives = 139/158 (87%)

Query: 1   MLFFEKDKPVIPPVQPNVGLDMVLKHMIQYVEKTARRGSIKLFRTQSPRHFEGGDWDQGG 60
           MLFFE   P+IP + P+VGLD+VLKHMI +VE+  R G IK FRTQSPRHFEGGDWDQGG
Sbjct: 157 MLFFENGLPLIPALPPHVGLDLVLKHMISFVERRMRTGGIKFFRTQSPRHFEGGDWDQGG 216

Query: 61  SCQRLQPLLPEQVEELFSVQNNGTNVEARLVNQHLYKALKGSDFQILDITHMSEFRADAH 120
            CQ LQPLLPEQVEELFS++NNGTNVE RLVNQHLYKAL+GSDF IL+IT MSEFRADAH
Sbjct: 217 FCQHLQPLLPEQVEELFSLENNGTNVETRLVNQHLYKALQGSDFHILEITRMSEFRADAH 276

Query: 121 PSTAGGKKHNDCMHWCLPGITDTWNDLFVTLLNNVKVR 158
           PSTAGGKKH+DCMHWCLPG TDTWNDLF+T LNN+K +
Sbjct: 277 PSTAGGKKHDDCMHWCLPGTTDTWNDLFITHLNNIKFQ 314

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359475560|ref|XP_003631702.1| PREDICTED: uncharacterized protein LOC100256594 [Vitis vinifera]

 Score =  272 bits (696), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 125/158 (79%), Positives = 139/158 (87%)

Query: 1   MLFFEKDKPVIPPVQPNVGLDMVLKHMIQYVEKTARRGSIKLFRTQSPRHFEGGDWDQGG 60
           MLFFE   P+IP + P+VGLD+VLKHMI +VE+  R G IK FRTQSPRHFEGGDWDQGG
Sbjct: 249 MLFFENGLPLIPALPPHVGLDLVLKHMISFVERRMRTGGIKFFRTQSPRHFEGGDWDQGG 308

Query: 61  SCQRLQPLLPEQVEELFSVQNNGTNVEARLVNQHLYKALKGSDFQILDITHMSEFRADAH 120
            CQ LQPLLPEQVEELFS++NNGTNVE RLVNQHLYKAL+GSDF IL+IT MSEFRADAH
Sbjct: 309 FCQHLQPLLPEQVEELFSLENNGTNVETRLVNQHLYKALQGSDFHILEITRMSEFRADAH 368

Query: 121 PSTAGGKKHNDCMHWCLPGITDTWNDLFVTLLNNVKVR 158
           PSTAGGKKH+DCMHWCLPG TDTWNDLF+T LNN+K +
Sbjct: 369 PSTAGGKKHDDCMHWCLPGTTDTWNDLFITHLNNIKFQ 406

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521269|ref|XP_003529279.1| PREDICTED: uncharacterized protein LOC100802467 [Glycine max]

 Score =  265 bits (676), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 121/154 (78%), Positives = 138/154 (89%)

Query: 1   MLFFEKDKPVIPPVQPNVGLDMVLKHMIQYVEKTARRGSIKLFRTQSPRHFEGGDWDQGG 60
           MLFF K +PVIPP++P+ GLDMVLKHMI Y+E+ AR G++K FRTQSPRHFEGGDWDQGG
Sbjct: 253 MLFFNKGQPVIPPLRPDQGLDMVLKHMIPYMEEKARLGALKFFRTQSPRHFEGGDWDQGG 312

Query: 61  SCQRLQPLLPEQVEELFSVQNNGTNVEARLVNQHLYKALKGSDFQILDITHMSEFRADAH 120
           SCQR +PL  EQVEELFS +NNGTNVE RLVN+HLYKALKGS F ILDITH+SEFRADAH
Sbjct: 313 SCQRDRPLSIEQVEELFSEKNNGTNVETRLVNKHLYKALKGSSFIILDITHLSEFRADAH 372

Query: 121 PSTAGGKKHNDCMHWCLPGITDTWNDLFVTLLNN 154
           P++AGGKKH+DCMHWCLPGITDTWNDLF+ LL +
Sbjct: 373 PASAGGKKHDDCMHWCLPGITDTWNDLFIELLKS 406

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388518747|gb|AFK47435.1| unknown [Medicago truncatula]

 Score =  261 bits (666), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 120/159 (75%), Positives = 142/159 (89%)

Query: 1   MLFFEKDKPVIPPVQPNVGLDMVLKHMIQYVEKTARRGSIKLFRTQSPRHFEGGDWDQGG 60
           MLFF+K +PVIPP++P+ GLDMVL+HMI YVE+ AR G+IK FRTQSPRHFEGGDWDQGG
Sbjct: 1   MLFFKKGQPVIPPLRPDQGLDMVLEHMIPYVEERARPGAIKFFRTQSPRHFEGGDWDQGG 60

Query: 61  SCQRLQPLLPEQVEELFSVQNNGTNVEARLVNQHLYKALKGSDFQILDITHMSEFRADAH 120
           SCQR +PL  +QVE+LFSV+NNGTNVE RLVN+HL KALKGS F  L+IT++SEFRADAH
Sbjct: 61  SCQRDRPLSAQQVEKLFSVKNNGTNVEVRLVNEHLDKALKGSGFVALNITYLSEFRADAH 120

Query: 121 PSTAGGKKHNDCMHWCLPGITDTWNDLFVTLLNNVKVRT 159
           P++AGGKKH+DCMHWCLPGITDTWNDLFV  LN++K R+
Sbjct: 121 PASAGGKKHDDCMHWCLPGITDTWNDLFVEHLNSIKHRS 159

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147858857|emb|CAN78688.1| hypothetical protein VITISV_006073 [Vitis vinifera]

 Score =  259 bits (663), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 125/158 (79%), Positives = 139/158 (87%)

Query: 1   MLFFEKDKPVIPPVQPNVGLDMVLKHMIQYVEKTARRGSIKLFRTQSPRHFEGGDWDQGG 60
           MLFFE   P+IP + P+VGLD+VLKHMI +VE+  R G IK FRTQSPRHFEGGDWDQGG
Sbjct: 264 MLFFENGLPLIPXLPPHVGLDLVLKHMISFVERRMRTGGIKFFRTQSPRHFEGGDWDQGG 323

Query: 61  SCQRLQPLLPEQVEELFSVQNNGTNVEARLVNQHLYKALKGSDFQILDITHMSEFRADAH 120
            CQ LQPLLPEQVEELFS++NNGTNVE RLVNQHLYKAL+GSDF IL+IT MSEFRADAH
Sbjct: 324 FCQHLQPLLPEQVEELFSLENNGTNVETRLVNQHLYKALQGSDFHILEITRMSEFRADAH 383

Query: 121 PSTAGGKKHNDCMHWCLPGITDTWNDLFVTLLNNVKVR 158
           PSTAGGKKH+DCMHWCLPG TDTWNDLF+T LNN+K +
Sbjct: 384 PSTAGGKKHDDCMHWCLPGTTDTWNDLFITHLNNIKFQ 421

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15225951|ref|NP_179059.1| trichome birefringence-like 13 protein [Arabidopsis thaliana] gi|4263820|gb|AAD15463.1| hypothetical protein [Arabidopsis thaliana] gi|18650652|gb|AAL75895.1| At2g14530/T13P21.9 [Arabidopsis thaliana] gi|21700859|gb|AAM70553.1| At2g14530/T13P21.9 [Arabidopsis thaliana] gi|330251215|gb|AEC06309.1| trichome birefringence-like 13 protein [Arabidopsis thaliana]

 Score =  249 bits (636), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 112/158 (70%), Positives = 129/158 (81%), Gaps = 1/158 (0%)

Query: 1   MLFFEKDKPVIPPVQPNVGLDMVLKHMIQYVEKTARRGSIKLFRTQSPRHFEGGDWDQGG 60
           MLFFE  +P++PP+ P  GLD VL +M+ +VEKT R G I  FRTQSPRHFEGGDWDQGG
Sbjct: 254 MLFFEGGRPILPPIPPATGLDRVLNNMVNFVEKTKRPGGIIFFRTQSPRHFEGGDWDQGG 313

Query: 61  SCQRLQPLLPEQVEELFSVQNNGTNVEARLVNQHLYKALKG-SDFQILDITHMSEFRADA 119
           +CQRLQPLLP +VEE FSV NNGTNVE RLVNQHLY +LK  S F +LDIT MSE+RADA
Sbjct: 314 TCQRLQPLLPGKVEEFFSVGNNGTNVEVRLVNQHLYNSLKSRSAFHVLDITRMSEYRADA 373

Query: 120 HPSTAGGKKHNDCMHWCLPGITDTWNDLFVTLLNNVKV 157
           HP+ AGGK H+DCMHWCLPG+TDTWNDLFV  L+ +K 
Sbjct: 374 HPAAAGGKNHDDCMHWCLPGLTDTWNDLFVATLHTIKA 411

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255562098|ref|XP_002522057.1| conserved hypothetical protein [Ricinus communis] gi|223538656|gb|EEF40257.1| conserved hypothetical protein [Ricinus communis]

 Score =  245 bits (626), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 121/158 (76%), Positives = 140/158 (88%)

Query: 1   MLFFEKDKPVIPPVQPNVGLDMVLKHMIQYVEKTARRGSIKLFRTQSPRHFEGGDWDQGG 60
           MLFFE+ +PVIPP+ P+VGLD VLK+M+ +VEKT   G IK FRTQSPRHFEGGDWDQGG
Sbjct: 252 MLFFERGEPVIPPIPPDVGLDKVLKNMMLFVEKTMHPGGIKFFRTQSPRHFEGGDWDQGG 311

Query: 61  SCQRLQPLLPEQVEELFSVQNNGTNVEARLVNQHLYKALKGSDFQILDITHMSEFRADAH 120
           SC R+QP+LPE+ EELFS++NNGTNVE RLVNQHL+KAL+GSDF ILDIT MSE RADAH
Sbjct: 312 SCPRVQPMLPEEAEELFSIKNNGTNVETRLVNQHLFKALEGSDFHILDITPMSELRADAH 371

Query: 121 PSTAGGKKHNDCMHWCLPGITDTWNDLFVTLLNNVKVR 158
           PSTAGGK+H+DCMHWCLPGITDTW DLF+  LN++KVR
Sbjct: 372 PSTAGGKRHDDCMHWCLPGITDTWIDLFIMHLNSLKVR 409

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242050282|ref|XP_002462885.1| hypothetical protein SORBIDRAFT_02g033800 [Sorghum bicolor] gi|241926262|gb|EER99406.1| hypothetical protein SORBIDRAFT_02g033800 [Sorghum bicolor]

 Score =  235 bits (599), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 107/156 (68%), Positives = 125/156 (80%)

Query: 1   MLFFEKDKPVIPPVQPNVGLDMVLKHMIQYVEKTARRGSIKLFRTQSPRHFEGGDWDQGG 60
           MLFFEK KP++PP+ P  GLD+VL++MI YV K  R  ++K FRTQSPRHFEGGDW++GG
Sbjct: 251 MLFFEKGKPIVPPLLPPAGLDLVLQNMITYVNKAMRPNTVKFFRTQSPRHFEGGDWNEGG 310

Query: 61  SCQRLQPLLPEQVEELFSVQNNGTNVEARLVNQHLYKALKGSDFQILDITHMSEFRADAH 120
           SCQR  PL  E+VE+ FS+ NN TNVE RLVNQHL KAL+ S F++LDIT MSEFRADAH
Sbjct: 311 SCQRNLPLSSEEVEDFFSLDNNSTNVETRLVNQHLVKALEQSSFRVLDITRMSEFRADAH 370

Query: 121 PSTAGGKKHNDCMHWCLPGITDTWNDLFVTLLNNVK 156
           PST GGKKH+DCMHWCLPG TDTWNDL    L  V+
Sbjct: 371 PSTTGGKKHDDCMHWCLPGPTDTWNDLLALSLEAVE 406

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297831908|ref|XP_002883836.1| hypothetical protein ARALYDRAFT_480347 [Arabidopsis lyrata subsp. lyrata] gi|297329676|gb|EFH60095.1| hypothetical protein ARALYDRAFT_480347 [Arabidopsis lyrata subsp. lyrata]

 Score =  234 bits (598), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 113/157 (71%), Positives = 132/157 (84%), Gaps = 1/157 (0%)

Query: 1   MLFFEKDKPVIPPVQPNVGLDMVLKHMIQYVEKTARRGSIKLFRTQSPRHFEGGDWDQGG 60
           MLFFE  +P++PP+ P  GLD VL +M+ +VEKT R G I  FRTQSPRHFEGGDW+QGG
Sbjct: 254 MLFFEGGRPILPPIPPAAGLDQVLNNMVNFVEKTKRPGGIIFFRTQSPRHFEGGDWNQGG 313

Query: 61  SCQRLQPLLPEQVEELFSVQNNGTNVEARLVNQHLYKALKG-SDFQILDITHMSEFRADA 119
           +CQRLQPLLP +VEELFSV+NNGTNVE RLVNQHLY +LK  S F +LDIT MSE+RADA
Sbjct: 314 TCQRLQPLLPGKVEELFSVRNNGTNVEVRLVNQHLYSSLKSRSAFHVLDITRMSEYRADA 373

Query: 120 HPSTAGGKKHNDCMHWCLPGITDTWNDLFVTLLNNVK 156
           HP+TAGGK H+DCMHWCLPGITDTWNDLF+  L+ +K
Sbjct: 374 HPATAGGKNHDDCMHWCLPGITDTWNDLFIATLHTIK 410

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	159
TAIR|locus:2055200	412	TBL13 "AT2G14530" [Arabidopsis	0.981	0.378	0.656	1.4e-55
TAIR|locus:2179386	407	TBL12 "AT5G64470" [Arabidopsis	0.981	0.383	0.429	2.2e-34
TAIR|locus:2091388	414	TBL22 "AT3G28150" [Arabidopsis	0.905	0.347	0.286	2.1e-18
TAIR|locus:2035342	456	TBL25 "AT1G01430" [Arabidopsis	0.849	0.296	0.348	1.6e-15
TAIR|locus:2125048	442	TBL26 "AT4G01080" [Arabidopsis	0.691	0.248	0.408	4e-15
TAIR|locus:2160796	408	TBL14 "AT5G64020" [Arabidopsis	0.610	0.237	0.371	5.3e-15
TAIR|locus:2096094	475	TBL6 "AT3G62390" [Arabidopsis	0.893	0.298	0.268	1e-14
TAIR|locus:2180399	551	TBL16 "AT5G20680" [Arabidopsis	0.622	0.179	0.336	4.8e-14
TAIR|locus:2080767	427	TBL8 "AT3G11570" [Arabidopsis	0.855	0.318	0.319	2.6e-13
TAIR|locus:2088659	556	TBL1 "AT3G12060" [Arabidopsis	0.855	0.244	0.281	3.5e-13

TAIR|locus:2055200 TBL13 "AT2G14530" [Arabidopsis thaliana (taxid:3702)]

 Score = 573 (206.8 bits), Expect = 1.4e-55, P = 1.4e-55
 Identities = 103/157 (65%), Positives = 119/157 (75%)

Query:     1 MLFFEKDKPVIPPVQPNVGLDMVLKHMIQYVEKTARRGSIKLFRTQSPRHFEGGDWDQGG 60
             MLFFE  +P++PP+ P  GLD VL +M+ +VEKT R G I  FRTQSPRHFEGGDWDQGG
Sbjct:   254 MLFFEGGRPILPPIPPATGLDRVLNNMVNFVEKTKRPGGIIFFRTQSPRHFEGGDWDQGG 313

Query:    61 SCQRXXXXXXXXXXXXFSVQNNGTNVEARLVNQHLYKALKG-SDFQILDITHMSEFRADA 119
             +CQR            FSV NNGTNVE RLVNQHLY +LK  S F +LDIT MSE+RADA
Sbjct:   314 TCQRLQPLLPGKVEEFFSVGNNGTNVEVRLVNQHLYNSLKSRSAFHVLDITRMSEYRADA 373

Query:   120 HPSTAGGKKHNDCMHWCLPGITDTWNDLFVTLLNNVK 156
             HP+ AGGK H+DCMHWCLPG+TDTWNDLFV  L+ +K
Sbjct:   374 HPAAAGGKNHDDCMHWCLPGLTDTWNDLFVATLHTIK 410

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0005794 "Golgi apparatus" evidence=IDA

TAIR|locus:2179386 TBL12 "AT5G64470" [Arabidopsis thaliana (taxid:3702)]

 Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
 Identities = 70/163 (42%), Positives = 101/163 (61%)

Query:     1 MLFFEKDKPVIPPVQPNVGLDMVLKHMIQYVEKTARRGSIKLFRTQSPRHFEGGDWDQGG 60
             ++F+ K KP+ PP+    G ++VL++M+ Y+++     ++K +R QSPRHF GGDW+Q G
Sbjct:   243 LVFYRKGKPINPPLDILPGFELVLQNMVSYIQREVPAKTLKFWRLQSPRHFYGGDWNQNG 302

Query:    61 SCQRXXXXXXXXXXXXFSVQNNGTNVEARLVNQHLYKALKGSDFQILDITHMSEFRADAH 120
             SC              F  +NNG N EAR +NQ +   L+ +  ++LD+TH+SEFRADAH
Sbjct:   303 SCLLDKPLEENQLDLWFDPRNNGVNKEARKINQIIKNELQTTKIKLLDLTHLSEFRADAH 362

Query:   121 PSTAGGKKH------NDCMHWCLPGITDTWNDLFVTL-LNNVK 156
             P+   GK+        DCMHWCLPG+ DTW D+   L L N+K
Sbjct:   363 PAIWLGKQDAVAIWGQDCMHWCLPGVPDTWVDILAELILTNLK 405

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2091388 TBL22 "AT3G28150" [Arabidopsis thaliana (taxid:3702)]

 Score = 227 (85.0 bits), Expect = 2.1e-18, P = 2.1e-18
 Identities = 45/157 (28%), Positives = 75/157 (47%)

Query:     9 PVIPPVQPNVGLDMVLKHMIQYVEKT--ARRGSIKLFRTQSPRHFEGGDWDQGGSCQRXX 66
             P +  + P  G  +V   +++ + +    ++  + + RT SP HFE G WD GG+C R  
Sbjct:   262 PNMTQISPEEGFKLVYSAVLRQINECEMCKKDLVTVLRTISPAHFENGTWDTGGTCSRTS 321

Query:    67 XXXXXXXXXXFSVQNNGTNVEARLVNQH---LYKALKGSDFQILDITHMSEFRADAHPST 123
                         +Q+N   +    + Q      +  K   F +LD+T + + R D HP+ 
Sbjct:   322 PFGENK----IDLQSNEMKIRKSQIEQLEGITKRGNKAKKFAVLDVTRVMQMRPDGHPNG 377

Query:   124 AGGKK----HNDCMHWCLPGITDTWNDLFVTLLNNVK 156
               G K    +NDC+HWCLPG  D WND  + ++  ++
Sbjct:   378 YWGNKWMKGYNDCVHWCLPGPIDAWNDFLMAIIRQLR 414

GO:0010411 "xyloglucan metabolic process" evidence=IMP

GO:0005794 "Golgi apparatus" evidence=IDA

TAIR|locus:2035342 TBL25 "AT1G01430" [Arabidopsis thaliana (taxid:3702)]

 Score = 202 (76.2 bits), Expect = 1.6e-15, P = 1.6e-15
 Identities = 53/152 (34%), Positives = 71/152 (46%)

Query:    23 VLKHMIQYVEKTARRGSIKLFRTQSPRHFEGGDWDQGGSCQRXXXXXXXXXXXXFSVQNN 82
             VL  ++ +V +   +  + LFRT +P HFE G+WD GG C R             S   +
Sbjct:   304 VLHLVLDFVAEPNHKAQV-LFRTTTPDHFENGEWDSGGFCNRTMPFTEGSEGEMKSEDVS 362

Query:    83 GTNVEARLVNQHLYKALKGSDFQI--LDITHMSEFRADAHPST-------AGGKK----- 128
               ++E     +      +GS+  I  LD T MS  R D HP         AG K      
Sbjct:   363 MRDIELEEFYKTTTTQQEGSNSNIVLLDTTSMSLLRPDGHPGPYRYPNPFAGLKNKELNQ 422

Query:   129 -HNDCMHWCLPGITDTWNDLFV-TLLNNVKVR 158
               NDC+HWCLPG  D+WNDL V  +LN  + R
Sbjct:   423 VQNDCLHWCLPGPIDSWNDLMVEVMLNRERQR 454

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2125048 TBL26 "AT4G01080" [Arabidopsis thaliana (taxid:3702)]

 Score = 198 (74.8 bits), Expect = 4.0e-15, P = 4.0e-15
 Identities = 51/125 (40%), Positives = 63/125 (50%)

Query:    42 LFRTQSPRHFEGGDWDQGGSCQRXXXXXXXXXXXXFSVQNNGTNVEARLVNQHLYKALK- 100
             LFRT +P HFE G+W+ GG C R             +V +   +VE   V Q   K    
Sbjct:   310 LFRTTTPDHFENGEWNTGGYCNRTMPFKEGQANMK-TVDDVMRDVELE-VFQKFGKGFGL 367

Query:   101 GSDFQILDITHMSEFRADAHPST-------AGGKK----HNDCMHWCLPGITDTWNDLFV 149
             GS+ ++LD T MS  R D HP         AG K      NDC+HWCLPG  D+WND+ V
Sbjct:   368 GSNIRLLDTTGMSLLRPDGHPGPYRHPNPFAGVKNKSNVQNDCLHWCLPGPIDSWNDVMV 427

Query:   150 -TLLN 153
              T LN
Sbjct:   428 ETTLN 432

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2160796 TBL14 "AT5G64020" [Arabidopsis thaliana (taxid:3702)]

 Score = 196 (74.1 bits), Expect = 5.3e-15, P = 5.3e-15
 Identities = 45/121 (37%), Positives = 63/121 (52%)

Query:    43 FRTQSPRHFEGGDWDQGGSCQRXXXXXXXXXXXXFSVQNNGTNVEARLVNQHLYKALKGS 102
             FRT SPRHF+ GDW+ GG+C                +  +  +++A + +     A+ G+
Sbjct:   295 FRTISPRHFKNGDWNTGGNCNNTVPLSRGS-----EITGDDGSIDATVES-----AVNGT 344

Query:   103 DFQILDITHMSEFRADAH----------PSTAGGKKH----NDCMHWCLPGITDTWNDLF 148
               +ILDIT +SE R +AH          P  A         NDC+HWCLPGI DTWN+LF
Sbjct:   345 RIKILDITALSELRDEAHISGSKLKPRKPKKASNVTSTPTINDCLHWCLPGIPDTWNELF 404

Query:   149 V 149
             +
Sbjct:   405 I 405

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2096094 TBL6 "AT3G62390" [Arabidopsis thaliana (taxid:3702)]

 Score = 195 (73.7 bits), Expect = 1.0e-14, P = 1.0e-14
 Identities = 43/160 (26%), Positives = 80/160 (50%)

Query:     3 FFEKDKPVIPPVQPNVGLDMVLKHMIQYVEKTARRGSIKLF-RTQSPRHFEGGDWDQGGS 61
             ++++   + P +  +      L+    +V+K       ++F R+ +P HF GG+W+ GG 
Sbjct:   323 YYQEGDLIHPKLDVSTAFKKALQTWSSWVDKNVDPKKTRVFFRSAAPSHFSGGEWNSGGH 382

Query:    62 CQRXXXXXXXXXXXXFSVQNNGTNVEARLVNQHLYKALKGSDFQILDITHMSEFRADAHP 121
             C+             +S + +        + + + K ++ +   +L+++ +S++R DAHP
Sbjct:   383 CREANMPLNQTFKPSYSSKKS--------IVEDVLKQMR-TPVTLLNVSGLSQYRIDAHP 433

Query:   122 STAGGKKHN-------DCMHWCLPGITDTWND-LFVTLLN 153
             S  G K  N       DC HWCLPG+ DTWN  L++ LL+
Sbjct:   434 SIYGTKPENRRSRAVQDCSHWCLPGVPDTWNHFLYLHLLH 473

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2180399 TBL16 "AT5G20680" [Arabidopsis thaliana (taxid:3702)]

 Score = 190 (71.9 bits), Expect = 4.8e-14, P = 4.8e-14
 Identities = 38/113 (33%), Positives = 60/113 (53%)

Query:    43 FRTQSPRHFEGGDWDQGGSCQRXXXXXXXXXXXXFSVQNNGTNVEARLVNQHLYKALKGS 102
             +R+ SPRHF GG+W+ GGSC                +Q   ++  A        +A+KG+
Sbjct:   450 YRSLSPRHFVGGEWNTGGSCNNTTPMSIGKEV----LQEESSDYSAG-------RAVKGT 498

Query:   103 DFQILDITHMSEFRADAHPST---AGGKKHNDCMHWCLPGITDTWNDLFVTLL 152
               ++LDIT +S  R + H S    +  +   DC+HWCLPG+ DTWN++   ++
Sbjct:   499 GVKLLDITALSHIRDEGHISRFSISASRGVQDCLHWCLPGVPDTWNEILFAMI 551

GO:0008150 "biological_process" evidence=ND

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2080767 TBL8 "AT3G11570" [Arabidopsis thaliana (taxid:3702)]

 Score = 181 (68.8 bits), Expect = 2.6e-13, P = 2.6e-13
 Identities = 47/147 (31%), Positives = 69/147 (46%)

Query:    19 GLDMVLKHMIQYV-EKTARRGSIKLFRTQSPRHFEGGDWDQGGSCQRXXXXXXXXXXXXF 77
             G +  LK    +V E+     S   FR+ SP H+  G W+ GG C               
Sbjct:   285 GFEKSLKTWKSWVLERLDSERSHVFFRSFSPVHYRNGTWNLGGLCDADTEPETDMKKMEP 344

Query:    78 SVQNNGTNVEARLVNQHLYKALKGSDFQILDITHMSEFRADAHPST--AGGKKHN---DC 132
                +N  N  ++ + +  Y+  K    + L+IT+++EFR DAHPS     G   +   DC
Sbjct:   345 DPIHN--NYISQAIQEMRYEHSK---VKFLNITYLTEFRKDAHPSRYREPGTPEDAPQDC 399

Query:   133 MHWCLPGITDTWNDLFVTLLNNVKVRT 159
              HWCLPG+ DTWN++    L  +  RT
Sbjct:   400 SHWCLPGVPDTWNEILYAQLLAMNYRT 426

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2088659 TBL1 "AT3G12060" [Arabidopsis thaliana (taxid:3702)]

 Score = 182 (69.1 bits), Expect = 3.5e-13, P = 3.5e-13
 Identities = 45/160 (28%), Positives = 75/160 (46%)

Query:     3 FFEKDKPVIPPVQPNVGLDMVLKHMIQYVEKTAR-RGSIKLFRTQSPRHFEGGDWDQGGS 61
             ++++   V P +  +      L    ++V+K    + S+  FR  SP HF GG W+ GG+
Sbjct:   382 YYQEGSTVHPKLDVDEAFRKALTTWGRWVDKNVNPKKSLVFFRGYSPSHFSGGQWNAGGA 441

Query:    62 CQRXXXXXXXXXXXXFSVQNNGTNVEARLVNQHLYKALKGSDFQI--LDITHMSEFRADA 119
             C                ++N        L  + L + L+G    +  L+IT ++++R DA
Sbjct:   442 CDDETE----------PIKNETYLTPYMLKMEILERVLRGMKTPVTYLNITRLTDYRKDA 491

Query:   120 HPSTAGGKK-----------HNDCMHWCLPGITDTWNDLF 148
             HPS    +K           + DC HWCLPG+ D+WN++F
Sbjct:   492 HPSIYRKQKLSAEESKSPLLYQDCSHWCLPGVPDSWNEIF 531

GO:0030244 "cellulose biosynthetic process" evidence=IMP

GO:0007129 "synapsis" evidence=RCA

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pm.C_LG_IX0384 hypothetical protein (407 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	159
pfam13839	270	pfam13839, PC-Esterase, GDSL/SGNH-like Acyl-Estera	2e-32
PLN02629	387	PLN02629, PLN02629, powdery mildew resistance 5	5e-14

>gnl|CDD|222410 pfam13839, PC-Esterase, GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

 Score =  115 bits (291), Expect = 2e-32
 Identities = 53/138 (38%), Positives = 75/138 (54%), Gaps = 14/138 (10%)

Query: 19  GLDMVLKHMIQYVEKTARRGSIKLFRTQSPRHFEGGDWDQGGSCQRLQPLLPEQVEELFS 78
            L+   K +   +  +  +  +  FRT SP HFEGG+W+ GGSC   +PLL        S
Sbjct: 143 ALETWAKWVDVNLPPS--KTRV-FFRTFSPVHFEGGEWNTGGSCYETEPLLG-------S 192

Query: 79  VQNNGTNVEARLVNQHLYKALKGSDFQILDITHMSEFRADAHPS----TAGGKKHNDCMH 134
                T     +VN+ L +A   +  ++LDIT +S++R D HPS        KK  DC+H
Sbjct: 193 EYKGLTPEMIDIVNEVLSRAAMKTPVKLLDITLLSQYRKDGHPSVYRKPGPPKKEQDCLH 252

Query: 135 WCLPGITDTWNDLFVTLL 152
           WCLPG+ DTWN+L + LL
Sbjct: 253 WCLPGVPDTWNELLLALL 270

The PC-Esterase family is comprised of Cas1p, the Homo sapiens C7orf58, Arabidopsis thaliana PMR5 and a group of plant freezing resistance/coldacclimatization proteins typified by Arabidopsis thaliana ESKIMO1, animal FAM55D proteins, and animal FAM113 proteins. The PC-Esterase family has features that are both similar and different from the canonical GDSL/SGNH superfamily. The members of this family are predicted to have Acyl esterase activity and predicted to modify cell-surface biopolymers such as glycans and glycoproteins. The Cas1p protein has a Cas1_AcylT domain, in addition, with the opposing acyltransferase activity. The C7orf58 family has a ATP-Grasp domain fused to the PC-Esterase and is the first identified secreted tubulin-tyrosine ligase like enzyme in eukaryotes. The plant family with PMR5, ESK1, TBL3 etc have a N-terminal C rich potential sugar binding domain followed by the PC-Esterase domain. Length = 270

>gnl|CDD|215338 PLN02629, PLN02629, powdery mildew resistance 5

 Score = 67.6 bits (165), Expect = 5e-14
 Identities = 42/146 (28%), Positives = 63/146 (43%), Gaps = 14/146 (9%)

Query: 18  VGLDMVLKHMIQYVEKTARRGSIK-LFRTQSPRHFEGGDWDQGGSCQRLQPLLPEQVEEL 76
           V L+  L+    +V+    R   +  F++ SP H+   +W  G S          +   +
Sbjct: 243 VALEKALRTWAYWVDTNVDRSRTRVFFQSISPTHYNPSEWSAGASTTTKNCY--GETTPM 300

Query: 77  FSVQNNGTNVEARLVNQHLYKALKGSDFQILDITHMSEFRADAHPSTAGG---------- 126
             +   G   +   V   + + +    + +LDIT +SE R D HPS   G          
Sbjct: 301 SGMTYPGAYPDQMRVVDEVIRGMHNPAY-LLDITLLSELRKDGHPSIYSGDLSPSQRANP 359

Query: 127 KKHNDCMHWCLPGITDTWNDLFVTLL 152
            +  DC HWCLPG+ DTWN LF T L
Sbjct: 360 DRSADCSHWCLPGLPDTWNQLFYTAL 385

Length = 387

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	159
PLN02629	387	powdery mildew resistance 5	100.0
PF13839	263	PC-Esterase: GDSL/SGNH-like Acyl-Esterase family f	99.98
cd01841	174	NnaC_like NnaC (CMP-NeuNAc synthetase) _like subfa	90.98
cd01827	188	sialate_O-acetylesterase_like1 sialate O-acetylest	88.76
cd04502	171	SGNH_hydrolase_like_7 Members of the SGNH-hydrolas	86.52
cd01842	183	SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SG	82.21
cd01838	199	Isoamyl_acetate_hydrolase_like Isoamyl-acetate hyd	80.14

>PLN02629 powdery mildew resistance 5

Probab=100.00  E-value=2e-52  Score=362.91  Aligned_cols=142  Identities=31%  Similarity=0.617  Sum_probs=118.4

Q ss_pred             eeecCcccCCCCChHHHHHHHHHHHHHHHHHhCCC-CceEEEeecCCCCCCCCCCCCCC-----CCC-ccccCCCcchhh
Q 031446            3 FFEKDKPVIPPVQPNVGLDMVLKHMIQYVEKTARR-GSIKLFRTQSPRHFEGGDWDQGG-----SCQ-RLQPLLPEQVEE   75 (159)
Q Consensus         3 y~~~g~~~~~~~~~~~ay~~al~t~~~wv~~~~~~-~~~vffRt~SP~Hfe~g~W~~gg-----~C~-~t~P~~~~e~~~   75 (159)
                      |++.|+.++++|++.+||++||+||++||++++++ +++|||||+||+|||||+||+||     +|. +|+|+.+++.  
T Consensus       228 ~~~~g~~~~~~~~~~~A~r~al~T~~~wv~~~~~~~kt~vffrT~SP~Hfe~g~Wn~gg~~~~~~C~~et~P~~~~~~--  305 (387)
T PLN02629        228 YIESGGTYYQDMDRLVALEKALRTWAYWVDTNVDRSRTRVFFQSISPTHYNPSEWSAGASTTTKNCYGETTPMSGMTY--  305 (387)
T ss_pred             eeccCCccccCccHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEecCcccccCCCcCCCCCCCCCCCccCCccCcCccc--
Confidence            78888888999999999999999999999998865 78999999999999999999875     475 4788874432  


Q ss_pred             hhhccCCCChHHHHHHHHHHHHHhcCCceEEeeccccccccccCCCCCCCCC----------CCCCccccccCCcchHHH
Q 031446           76 LFSVQNNGTNVEARLVNQHLYKALKGSDFQILDITHMSEFRADAHPSTAGGK----------KHNDCMHWCLPGITDTWN  145 (159)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lLdiT~~s~~R~DgHps~y~~~----------~~~DC~HWCLPGv~D~WN  145 (159)
                           ..+...+++++++++++.  +.+|+|||||+||++|||||||+|++.          .++||+||||||||||||
T Consensus       306 -----~~~~~~~~~~ve~v~~~~--~~~v~lLDIT~ls~lR~DgHPs~Y~~~~~~~~~~~p~~~~DC~HWCLPGvpDTWN  378 (387)
T PLN02629        306 -----PGAYPDQMRVVDEVIRGM--HNPAYLLDITLLSELRKDGHPSIYSGDLSPSQRANPDRSADCSHWCLPGLPDTWN  378 (387)
T ss_pred             -----cCcchHHHHHHHHHHHhc--CCceEEEechhhhhcCCCCCcccccCCCchhhccCCCCCCCcccccCCCCCccHH
Confidence                 122334555565555432  478999999999999999999999632          238999999999999999


Q ss_pred             HHHHHHHh
Q 031446          146 DLFVTLLN  153 (159)
Q Consensus       146 elL~~~L~  153 (159)
                      ||||++|.
T Consensus       379 elL~a~L~  386 (387)
T PLN02629        379 QLFYTALF  386 (387)
T ss_pred             HHHHHHHh
Confidence            99999986

>PF13839 PC-Esterase: GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Probab=99.98  E-value=9.3e-32  Score=216.99  Aligned_cols=130  Identities=42%  Similarity=0.783  Sum_probs=106.8

Q ss_pred             CCCChHHHHHHHHHHHHHHHHHhCC-CC--ceEEEeecCCCCCCCCCCCCCCCCCccccCCCcchhhhhhccCCCChHHH
Q 031446           12 PPVQPNVGLDMVLKHMIQYVEKTAR-RG--SIKLFRTQSPRHFEGGDWDQGGSCQRLQPLLPEQVEELFSVQNNGTNVEA   88 (159)
Q Consensus        12 ~~~~~~~ay~~al~t~~~wv~~~~~-~~--~~vffRt~SP~Hfe~g~W~~gg~C~~t~P~~~~e~~~~~~~~~~~~~~~~   88 (159)
                      .+++..++|+.+++++++++.+.++ .+  ++||||+++|.||++++|++||.|..   ....+          ......
T Consensus       125 ~~~~~~~~y~~~l~~~~~~~~~~~~~~~~~~~v~~r~~~P~h~~~~~~~~gg~c~~---~~~~~----------~~~~~~  191 (263)
T PF13839_consen  125 KEINPLEAYRNRLRTLADWVRRLLDRSKPPTRVFWRTTSPVHFEGGDWNSGGSCNP---PRREE----------ITNEQI  191 (263)
T ss_pred             cCcchHHHHHHHHHHHHHHHHhhhccccccceEEEEecCCccccccccccCCCcCc---ccccC----------CCHHHH
Confidence            5678999999999999999997774 33  89999999999999999999999981   11111          112234


Q ss_pred             HHHHHHHHHHh-cCCceEEeec-cccccccc-cCCCCCCCCC---CCCCccccccCCcchHHHHHHHHHHhh
Q 031446           89 RLVNQHLYKAL-KGSDFQILDI-THMSEFRA-DAHPSTAGGK---KHNDCMHWCLPGITDTWNDLFVTLLNN  154 (159)
Q Consensus        89 ~~~~~~~~~~~-~~~~v~lLdi-T~~s~~R~-DgHps~y~~~---~~~DC~HWCLPGv~D~WNelL~~~L~~  154 (159)
                      ..+++++.++. +..++++||| |.|+.+|+ |||||+|+..   ...||+|||+|||+|+||+|||++|+.
T Consensus       192 ~~~~~~~~~~~~~~~~~~~ldi~~~~~~~r~~d~H~~~~~~~~~~~~~Dc~Hw~~p~v~d~~~~lL~~~lcn  263 (263)
T PF13839_consen  192 DELNEALREALKKNSRVHLLDIFTMLSSFRPDDAHPGIYRNQWPRQPQDCLHWCLPGVIDTWNELLLNLLCN  263 (263)
T ss_pred             HHHHHHHHHHhhcCCCceeeeecchhhhccccccCcccccCCCCCCCCCCcCcCCCcHHHHHHHHHHHHhhC
Confidence            45666776666 6789999999 99999999 9999999753   248999999999999999999999863

>cd01841 NnaC_like NnaC (CMP-NeuNAc synthetase) _like subfamily of SGNH_hydrolases, a diverse family of lipases and esterases

Probab=90.98  E-value=2.4  Score=31.73  Aligned_cols=72  Identities=8%  Similarity=0.077  Sum_probs=44.8

Q ss_pred             hHHHHHHHHHHHHHHHHHhCCCCceEEEeecCCCCCCCCCCCCCCCCCccccCCCcchhhhhhccCCCChHHHHHHHHHH
Q 031446           16 PNVGLDMVLKHMIQYVEKTARRGSIKLFRTQSPRHFEGGDWDQGGSCQRLQPLLPEQVEELFSVQNNGTNVEARLVNQHL   95 (159)
Q Consensus        16 ~~~ay~~al~t~~~wv~~~~~~~~~vffRt~SP~Hfe~g~W~~gg~C~~t~P~~~~e~~~~~~~~~~~~~~~~~~~~~~~   95 (159)
                      ..+.|+..++++++-+.+. .+++.|++-++.|...+.-       +    +              .........+++++
T Consensus        69 ~~~~~~~~~~~l~~~~~~~-~p~~~vi~~~~~p~~~~~~-------~----~--------------~~~~~~~~~~n~~l  122 (174)
T cd01841          69 SSNQFIKWYRDIIEQIREE-FPNTKIYLLSVLPVLEEDE-------I----K--------------TRSNTRIQRLNDAI  122 (174)
T ss_pred             CHHHHHHHHHHHHHHHHHH-CCCCEEEEEeeCCcCcccc-------c----c--------------cCCHHHHHHHHHHH
Confidence            4566888889888888654 3567788888877654210       0    0              00112233466666


Q ss_pred             HHHhcCCceEEeeccccc
Q 031446           96 YKALKGSDFQILDITHMS  113 (159)
Q Consensus        96 ~~~~~~~~v~lLdiT~~s  113 (159)
                      ++.....++.++|+..+.
T Consensus       123 ~~~a~~~~~~~id~~~~~  140 (174)
T cd01841         123 KELAPELGVTFIDLNDVL  140 (174)
T ss_pred             HHHHHHCCCEEEEcHHHH
Confidence            665545569999999864

The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases. E. coli NnaC appears to be involved in polysaccharide synthesis.

>cd01827 sialate_O-acetylesterase_like1 sialate O-acetylesterase_like family of the SGNH hydrolases, a diverse family of lipases and esterases

Probab=88.76  E-value=3.7  Score=31.06  Aligned_cols=81  Identities=12%  Similarity=0.120  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCCceEEEeecCCCCCCCCCCCCCCCCCccccCCCcchhhhhhccCCCChHHHHHHHHHHH
Q 031446           17 NVGLDMVLKHMIQYVEKTARRGSIKLFRTQSPRHFEGGDWDQGGSCQRLQPLLPEQVEELFSVQNNGTNVEARLVNQHLY   96 (159)
Q Consensus        17 ~~ay~~al~t~~~wv~~~~~~~~~vffRt~SP~Hfe~g~W~~gg~C~~t~P~~~~e~~~~~~~~~~~~~~~~~~~~~~~~   96 (159)
                      .+.|+..++.+++.+.+. .+++.+++.|..|....  .|.         +....+              ....++++++
T Consensus        88 ~~~~~~~l~~li~~i~~~-~~~~~iil~t~~p~~~~--~~~---------~~~~~~--------------~~~~~~~~~~  141 (188)
T cd01827          88 KDDFKKDYETMIDSFQAL-PSKPKIYICYPIPAYYG--DGG---------FINDNI--------------IKKEIQPMID  141 (188)
T ss_pred             HHHHHHHHHHHHHHHHHH-CCCCeEEEEeCCccccc--CCC---------ccchHH--------------HHHHHHHHHH
Confidence            567888888888887654 45667888887775432  110         111111              0112344444


Q ss_pred             HHhcCCceEEeecccccc----ccccC-CCCC
Q 031446           97 KALKGSDFQILDITHMSE----FRADA-HPST  123 (159)
Q Consensus        97 ~~~~~~~v~lLdiT~~s~----~R~Dg-Hps~  123 (159)
                      +..+...+.++|+.....    +-+|+ ||+.
T Consensus       142 ~~a~~~~~~~vD~~~~~~~~~~~~~Dg~Hpn~  173 (188)
T cd01827         142 KIAKKLNLKLIDLHTPLKGKPELVPDWVHPNE  173 (188)
T ss_pred             HHHHHcCCcEEEccccccCCccccCCCCCcCH
Confidence            444446788999887643    33577 8874

The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.

>cd04502 SGNH_hydrolase_like_7 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases

Probab=86.52  E-value=11  Score=28.02  Aligned_cols=31  Identities=3%  Similarity=0.026  Sum_probs=22.7

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCCceEEEeecCC
Q 031446           17 NVGLDMVLKHMIQYVEKTARRGSIKLFRTQSP   48 (159)
Q Consensus        17 ~~ay~~al~t~~~wv~~~~~~~~~vffRt~SP   48 (159)
                      .+.|+..++++++-+.+.. ++..+++-+..|
T Consensus        69 ~~~~~~~~~~lv~~i~~~~-~~~~iil~~~~p   99 (171)
T cd04502          69 PEEVLRDFRELVNRIRAKL-PDTPIAIISIKP   99 (171)
T ss_pred             HHHHHHHHHHHHHHHHHHC-CCCcEEEEEecC
Confidence            6779999999999887553 455677767655

The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.

>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily

Probab=82.21  E-value=8.9  Score=30.81  Aligned_cols=99  Identities=18%  Similarity=0.208  Sum_probs=59.3

Q ss_pred             hHHHHHHHHHHHHHHHHHhCCCCceEEEeecCCCCCCCCCCCCCCCCCccccCCCcchhhhhhccCCCChHHHHHHHHHH
Q 031446           16 PNVGLDMVLKHMIQYVEKTARRGSIKLFRTQSPRHFEGGDWDQGGSCQRLQPLLPEQVEELFSVQNNGTNVEARLVNQHL   95 (159)
Q Consensus        16 ~~~ay~~al~t~~~wv~~~~~~~~~vffRt~SP~Hfe~g~W~~gg~C~~t~P~~~~e~~~~~~~~~~~~~~~~~~~~~~~   95 (159)
                      ..+-|+.-|.+...-+.+-++++++++|.|++|-=-+    -+||   +-.|-... .       ......+.-..|.++
T Consensus        70 ~~~~Y~~NL~~Lf~rLk~~lp~~allIW~tt~Pv~~~----~~gg---fl~~~~~~-~-------~~~lr~dv~eaN~~A  134 (183)
T cd01842          70 SMKTYRENLERLFSKLDSVLPIECLIVWNTAMPVAEE----IKGG---FLLPELHD-L-------SKSLRYDVLEGNFYS  134 (183)
T ss_pred             CHHHHHHHHHHHHHHHHhhCCCccEEEEecCCCCCcC----CcCc---eecccccc-c-------cccchhHHHHHHHHH
Confidence            5788999999999988877788899999999997221    1111   11110000 0       000011122245555


Q ss_pred             HHHhcCCceEEeeccccccccccCCCCCCCCCCCCCcccccc
Q 031446           96 YKALKGSDFQILDITHMSEFRADAHPSTAGGKKHNDCMHWCL  137 (159)
Q Consensus        96 ~~~~~~~~v~lLdiT~~s~~R~DgHps~y~~~~~~DC~HWCL  137 (159)
                      .+.++...+.++|+..-.  |-..|   +   ...|=+||--
T Consensus       135 ~~va~~~~~dVlDLh~~f--r~~~~---~---~~~DgVHwn~  168 (183)
T cd01842         135 ATLAKCYGFDVLDLHYHF--RHAMQ---H---RVRDGVHWNY  168 (183)
T ss_pred             HHHHHHcCceeeehHHHH--HhHHh---h---cCCCCcCcCH
Confidence            566666789999999887  32221   1   2368888853

SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.

>cd01838 Isoamyl_acetate_hydrolase_like Isoamyl-acetate hydrolyzing esterase-like proteins

Probab=80.14  E-value=7.5  Score=29.21  Aligned_cols=82  Identities=11%  Similarity=0.095  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCCceEEEeecCCCCCCCCCCCCCCCCCccccCCCcchhhhhhccCCCChHHHHHHHHHHH
Q 031446           17 NVGLDMVLKHMIQYVEKTARRGSIKLFRTQSPRHFEGGDWDQGGSCQRLQPLLPEQVEELFSVQNNGTNVEARLVNQHLY   96 (159)
Q Consensus        17 ~~ay~~al~t~~~wv~~~~~~~~~vffRt~SP~Hfe~g~W~~gg~C~~t~P~~~~e~~~~~~~~~~~~~~~~~~~~~~~~   96 (159)
                      .+.|+..++.+++-+.+. .+.+.|++-|..|....  .|..  .|....+.            ....+.....++.+++
T Consensus        87 ~~~~~~~~~~~i~~~~~~-~~~~~ii~~t~~~~~~~--~~~~--~~~~~~~~------------~~~~~~~~~~~~~~~~  149 (199)
T cd01838          87 LDEYKENLRKIVSHLKSL-SPKTKVILITPPPVDEE--AWEK--SLEDGGSQ------------PGRTNELLKQYAEACV  149 (199)
T ss_pred             HHHHHHHHHHHHHHHHhh-CCCCeEEEeCCCCCCHH--HHhh--hhccccCC------------ccccHHHHHHHHHHHH
Confidence            677888899988888753 34567888887774322  1211  01000000            0011122233555555


Q ss_pred             HHhcCCceEEeeccccccc
Q 031446           97 KALKGSDFQILDITHMSEF  115 (159)
Q Consensus        97 ~~~~~~~v~lLdiT~~s~~  115 (159)
                      +..+..++.++|+...+..
T Consensus       150 ~~a~~~~~~~iD~~~~~~~  168 (199)
T cd01838         150 EVAEELGVPVIDLWTAMQE  168 (199)
T ss_pred             HHHHHhCCcEEEHHHHHHh
Confidence            5444457999999876543

SGNH_hydrolase subfamily similar to the Saccharomyces cerevisiae IAH1. IAH1 may be the major esterase that hydrolyses isoamyl acetate in sake mash. The SGNH-family of hydrolases is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	159
2hsj_A	214	Putative platelet activating factor; structr genom	82.98
4h08_A	200	Putative hydrolase; GDSL-like lipase/acylhydrolase	81.91

>2hsj_A Putative platelet activating factor; structr genomics, structural genomics, PSI-2; HET: MSE; 1.50A {Streptococcus pneumoniae} SCOP: c.23.10.3

Probab=82.98  E-value=11  Score=27.29  Aligned_cols=76  Identities=11%  Similarity=-0.026  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCCceEEEeecCCCCCCCCCCCCCCCCCccccCCCcchhhhhhccCCCChHHHHHHHHHHH
Q 031446           17 NVGLDMVLKHMIQYVEKTARRGSIKLFRTQSPRHFEGGDWDQGGSCQRLQPLLPEQVEELFSVQNNGTNVEARLVNQHLY   96 (159)
Q Consensus        17 ~~ay~~al~t~~~wv~~~~~~~~~vffRt~SP~Hfe~g~W~~gg~C~~t~P~~~~e~~~~~~~~~~~~~~~~~~~~~~~~   96 (159)
                      .+.|...++.+++.+.+. .++..|++-+..|..... .|.       ..+             ..........++++++
T Consensus       104 ~~~~~~~l~~~i~~l~~~-~p~~~iil~~~~p~~~~~-~~~-------~~~-------------~~~~~~~~~~~n~~l~  161 (214)
T 2hsj_A          104 VNEALNNLEAIIQSVARD-YPLTEIKLLSILPVNERE-EYQ-------QAV-------------YIRSNEKIQNWNQAYQ  161 (214)
T ss_dssp             HHHHHHHHHHHHHHHHHH-CTTCEEEEECCCCCCCSG-GGH-------HHH-------------TTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHh-CCCCeEEEEecCCCCccc-ccc-------ccc-------------ccccHHHHHHHHHHHH
Confidence            456788888888888755 356678888887754310 010       000             0011223344677777


Q ss_pred             HHhcCC-ceEEeecccccc
Q 031446           97 KALKGS-DFQILDITHMSE  114 (159)
Q Consensus        97 ~~~~~~-~v~lLdiT~~s~  114 (159)
                      +..+.. ++.++|+.....
T Consensus       162 ~~a~~~~~~~~iD~~~~~~  180 (214)
T 2hsj_A          162 ELASAYMQVEFVPVFDCLT  180 (214)
T ss_dssp             HHHTTCTTEEEECCGGGSB
T ss_pred             HHHHHcCCCEEEEhHHHHh
Confidence            766656 899999987543

>4h08_A Putative hydrolase; GDSL-like lipase/acylhydrolase family protein, structural GE joint center for structural genomics, JCSG; HET: GOL; 1.80A {Bacteroides thetaiotaomicron}

Probab=81.91  E-value=7.5  Score=28.26  Aligned_cols=106  Identities=10%  Similarity=0.089  Sum_probs=60.3

Q ss_pred             hHHHHHHHHHHHHHHHHHhCCCCceEEEeecCCCCCCCCCCCCCCCCCccccCCCcchhhhhhccCCCChHHHHHHHHHH
Q 031446           16 PNVGLDMVLKHMIQYVEKTARRGSIKLFRTQSPRHFEGGDWDQGGSCQRLQPLLPEQVEELFSVQNNGTNVEARLVNQHL   95 (159)
Q Consensus        16 ~~~ay~~al~t~~~wv~~~~~~~~~vffRt~SP~Hfe~g~W~~gg~C~~t~P~~~~e~~~~~~~~~~~~~~~~~~~~~~~   95 (159)
                      ..+.|+..|+++++-+.+. .++..++|-|..|-...  .+.           ..          ..........+++++
T Consensus        90 ~~~~~~~~l~~ii~~l~~~-~p~~~ii~~~~~P~~~~--~~~-----------~~----------~~~~~~~~~~~n~~~  145 (200)
T 4h08_A           90 TEEEYDKSFPKLIKIIRKY-APKAKLIWANTTPVRTG--EGM-----------KE----------FAPITERLNVRNQIA  145 (200)
T ss_dssp             CHHHHHHHHHHHHHHHHHH-CTTCEEEEECCCCCEES--GGG-----------CE----------ECTHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhhh-CCCccEEEeccCCCccc--ccc-----------cc----------cchhHHHHHHHHHHH
Confidence            3567899999999888654 56677888888875432  000           00          001112223355555


Q ss_pred             HHHhcCCceEEeeccccccccccCCCCCCCCCCCCCccccccCCcchHHHHHHHHHHh
Q 031446           96 YKALKGSDFQILDITHMSEFRADAHPSTAGGKKHNDCMHWCLPGITDTWNDLFVTLLN  153 (159)
Q Consensus        96 ~~~~~~~~v~lLdiT~~s~~R~DgHps~y~~~~~~DC~HWCLPGv~D~WNelL~~~L~  153 (159)
                      ++..+...+.++|+...+.-+++..       ...|-+|..--|- ..|-+.++..|+
T Consensus       146 ~~~a~~~~v~~iD~~~~~~~~~~~~-------~~~Dg~Hpn~~Gy-~~~A~~i~~~i~  195 (200)
T 4h08_A          146 LKHINRASIEVNDLWKVVIDHPEYY-------AGGDGTHPIDAGY-SALANQVIKVIK  195 (200)
T ss_dssp             HHHHHHTTCEEECHHHHHTTCGGGT-------TTSCSSSCCHHHH-HHHHHHHHHHHH
T ss_pred             HHHhhhcceEEEecHHhHhcCHHHh-------cCCCCCCCCHHHH-HHHHHHHHHHHH
Confidence            5544446799999987765333221       1258888665552 344455555444

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00