Citrus Sinensis ID: 031468

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------16
Protein Sequence
MQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccEEEEEEcccHHHHHHHHHHHHHHHHHHHcccccEEEEEccccccccccccccccccccccEEEEcccccEEEcccHHHHHHHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccEEEEEcHHHHHHHHHHHHHHHHHHHHHHcccccEEEEccccccccccccccccccccccEEEEEccccEEEEcccHHHHHHHHHHHccHHHHHHHHcHccc
Coil and Loop (DISEMBL)
MQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKlqvhppeiivdhhiylppgpghhnahgpscsggvvvasrdgkivCENTLDARLDVVFRKKLPEIRKQLVSQVAA
Flexible Loop (DISEMBL)
MQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA
Low Complexity Region (SEG)
MQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLppgpghhnahgpSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA
Disordered region (IsUnstruct)
**********************************DHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEI**********
Disordered Region (DISOPRED)
***NASRIKVLQAQDDLVSNMMEAASKEVLN*SRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGH**AHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQ***
Disordered Region (DISEMBL)
MQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRK********
Disordered Region (DISPRO)
*QLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGH****GPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQV**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	159	2.2.26 [Sep-21-2011]
Q9MB46	230	V-type proton ATPase subu	N/A	no	1.0	0.691	1.0	2e-89
Q9SWE7	230	V-type proton ATPase subu	N/A	no	1.0	0.691	0.993	2e-88
O23948	237	V-type proton ATPase subu	N/A	no	0.993	0.666	0.748	7e-63
Q41396	229	V-type proton ATPase subu	N/A	no	0.993	0.689	0.742	3e-61
Q39258	230	V-type proton ATPase subu	yes	no	1.0	0.691	0.698	2e-58
Q40272	226	V-type proton ATPase subu	N/A	no	0.968	0.681	0.716	2e-55
P0CAN7	237	V-type proton ATPase subu	no	no	1.0	0.670	0.654	5e-55
Q9C9Z8	235	V-type proton ATPase subu	no	no	0.962	0.651	0.632	8e-50
O00780	233	V-type proton ATPase subu	yes	no	0.943	0.643	0.342	1e-23
P50518	226	V-type proton ATPase subu	yes	no	0.880	0.619	0.348	2e-19

>sp|Q9MB46|VATE_CITUN V-type proton ATPase subunit E OS=Citrus unshiu GN=VATE PE=2 SV=1

 Score =  327 bits (838), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 159/159 (100%), Positives = 159/159 (100%)

Query: 1   MQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVL 60
           MQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVL
Sbjct: 72  MQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVL 131

Query: 61  LRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVV 120
           LRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVV
Sbjct: 132 LRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVV 191

Query: 121 VASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA 159
           VASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA
Sbjct: 192 VASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA 230

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.
Citrus unshiu (taxid: 55188)

>sp|Q9SWE7|VATE_CITLI V-type proton ATPase subunit E OS=Citrus limon GN=VATE PE=2 SV=1

 Score =  324 bits (830), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 158/159 (99%), Positives = 158/159 (99%)

Query: 1   MQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVL 60
           MQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLK LIVQSLLRLKEPAVL
Sbjct: 72  MQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKDLIVQSLLRLKEPAVL 131

Query: 61  LRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVV 120
           LRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVV
Sbjct: 132 LRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVV 191

Query: 121 VASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA 159
           VASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA
Sbjct: 192 VASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA 230

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Citrus limon (taxid: 2708)

>sp|O23948|VATE_GOSHI V-type proton ATPase subunit E OS=Gossypium hirsutum GN=VATE PE=2 SV=1

 Score =  239 bits (609), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 125/167 (74%), Positives = 138/167 (82%), Gaps = 9/167 (5%)

Query: 1   MQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVL 60
           MQLNASRIKVLQAQDD+V+ M E+ASK+ LNVS DH+ YK+LLK LIVQSL+RLKEP VL
Sbjct: 72  MQLNASRIKVLQAQDDVVNAMKESASKDFLNVSHDHHVYKRLLKDLIVQSLVRLKEPGVL 131

Query: 61  LRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHH--------NAHG 112
           LRCRK+D HLVESVL+SAKEEYA K+ VHPPEIIVD  ++LPPGP HH         AHG
Sbjct: 132 LRCRKEDLHLVESVLDSAKEEYASKVNVHPPEIIVD-DVHLPPGPSHHHGFFHHHAEAHG 190

Query: 113 PSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA 159
           P CSGGVV+ASRDGKIV ENTLDARLDV F KKLPEIRK L  QVAA
Sbjct: 191 PFCSGGVVIASRDGKIVFENTLDARLDVAFNKKLPEIRKWLFGQVAA 237

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Gossypium hirsutum (taxid: 3635)

>sp|Q41396|VATE_SPIOL V-type proton ATPase subunit E OS=Spinacia oleracea GN=VATE PE=2 SV=1

 Score =  233 bits (595), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 118/159 (74%), Positives = 134/159 (84%), Gaps = 1/159 (0%)

Query: 1   MQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVL 60
           MQLNASRIKVLQAQDDLV++M E A+KE+L VS DH+ YK+LLK L+VQSLLRL+EP VL
Sbjct: 72  MQLNASRIKVLQAQDDLVNSMKEEAAKELLRVSGDHHHYKRLLKELVVQSLLRLREPGVL 131

Query: 61  LRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVV 120
           LRCR+DD HLVE VL SAKEEYA+K +VH PEIIVD  I+LP GP HH  HG  CSGGVV
Sbjct: 132 LRCREDDVHLVEHVLNSAKEEYAEKAEVHTPEIIVD-SIHLPAGPSHHKEHGLHCSGGVV 190

Query: 121 VASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA 159
           +ASRDGKIV ENTLDARL+V FRKKLP+IRKQL +  AA
Sbjct: 191 LASRDGKIVFENTLDARLEVAFRKKLPQIRKQLFAVAAA 229

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Spinacia oleracea (taxid: 3562)

>sp|Q39258|VATE1_ARATH V-type proton ATPase subunit E1 OS=Arabidopsis thaliana GN=VHA-E1 PE=1 SV=2

 Score =  224 bits (570), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 111/159 (69%), Positives = 130/159 (81%)

Query: 1   MQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVL 60
           MQLNASRIKVLQAQDD+V+ M + A+K++LNVSRD  +YK+LLK LIVQ LLRLKEP+VL
Sbjct: 72  MQLNASRIKVLQAQDDIVNAMKDQAAKDLLNVSRDEYAYKQLLKDLIVQCLLRLKEPSVL 131

Query: 61  LRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVV 120
           LRCR++D  LVE+VL+ AKEEYA K +VH PE+ VD  I+LPP P  ++ HG  CSGGVV
Sbjct: 132 LRCREEDLGLVEAVLDDAKEEYAGKAKVHAPEVAVDTKIFLPPPPKSNDPHGLHCSGGVV 191

Query: 121 VASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA 159
           +ASRDGKIVCENTLDARLDV FR KLP IRK L  QV A
Sbjct: 192 LASRDGKIVCENTLDARLDVAFRMKLPVIRKSLFGQVTA 230

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells. Required for Golgi organization and vacuole function in embryogenesis.

Arabidopsis thaliana (taxid: 3702)

>sp|Q40272|VATE_MESCR V-type proton ATPase subunit E OS=Mesembryanthemum crystallinum GN=VATE PE=2 SV=1

 Score =  214 bits (545), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 111/155 (71%), Positives = 128/155 (82%), Gaps = 1/155 (0%)

Query: 1   MQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVL 60
           MQLNASRIKVLQAQDDLV+ M EAASKE+L VS DH+ Y+ LLK LIVQSLLRLKEPAVL
Sbjct: 72  MQLNASRIKVLQAQDDLVNAMKEAASKELLLVSGDHHQYRNLLKELIVQSLLRLKEPAVL 131

Query: 61  LRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVV 120
           LRCR++D H V  VL SA+EEY +K  V  PE+IVD  I+LPP P  +++H  SCSGGVV
Sbjct: 132 LRCREEDKHHVHRVLHSAREEYGEKACVSHPEVIVD-DIHLPPAPTSYDSHELSCSGGVV 190

Query: 121 VASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVS 155
           +ASRDGKIV ENTLDARL+V FRKKLP+IRKQL +
Sbjct: 191 MASRDGKIVFENTLDARLEVAFRKKLPQIRKQLFA 225

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Mesembryanthemum crystallinum (taxid: 3544)

>sp|P0CAN7|VATE3_ARATH V-type proton ATPase subunit E3 OS=Arabidopsis thaliana GN=VHA-E3 PE=2 SV=1

 Score =  213 bits (541), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 108/165 (65%), Positives = 128/165 (77%), Gaps = 6/165 (3%)

Query: 1   MQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRD------HNSYKKLLKGLIVQSLLRL 54
           MQLNASRIKVLQAQDD+V+ M E A+K++L VS+       H+ YK LLK LIVQ LLRL
Sbjct: 72  MQLNASRIKVLQAQDDIVNAMKEEAAKQLLKVSQHGFFNHHHHQYKHLLKDLIVQCLLRL 131

Query: 55  KEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPS 114
           KEPAVLLRCR++D  +VES+L+ A EEY +K +VH PEIIVD  I+LPP P   + H  S
Sbjct: 132 KEPAVLLRCREEDLDIVESMLDDASEEYCKKAKVHAPEIIVDKDIFLPPAPSDDDPHALS 191

Query: 115 CSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA 159
           C+GGVV+ASRDGKIVCENTLDARL+V FR KLPEIRK L  +V A
Sbjct: 192 CAGGVVLASRDGKIVCENTLDARLEVAFRNKLPEIRKSLFGKVGA 236

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C9Z8|VATE2_ARATH V-type proton ATPase subunit E2 OS=Arabidopsis thaliana GN=VHA-E2 PE=2 SV=1

 Score =  195 bits (496), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 98/155 (63%), Positives = 126/155 (81%), Gaps = 2/155 (1%)

Query: 2   QLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLL 61
           QLNASRIK LQAQDD+V+ M ++A+K++L VS D N+YKKLLK LI++SLLRLKEP+VLL
Sbjct: 73  QLNASRIKYLQAQDDVVTAMKDSAAKDLLRVSNDKNNYKKLLKSLIIESLLRLKEPSVLL 132

Query: 62  RCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIY--LPPGPGHHNAHGPSCSGGV 119
           RCR+ D  +VESV+E AK +YA+K +V  P+I +D  ++   PP P   ++H P CSGGV
Sbjct: 133 RCREMDKKVVESVIEDAKRQYAEKAKVGSPKITIDEKVFLPPPPNPKLPDSHDPHCSGGV 192

Query: 120 VVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLV 154
           V+AS+DGKIVCENTLDARLDV FR+KLP+IR +LV
Sbjct: 193 VLASQDGKIVCENTLDARLDVAFRQKLPQIRTRLV 227

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Arabidopsis thaliana (taxid: 3702)

>sp|O00780|VATE_DICDI V-type proton ATPase subunit E OS=Dictyostelium discoideum GN=vatE PE=1 SV=1

 Score =  108 bits (271), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 52/152 (34%), Positives = 96/152 (63%), Gaps = 2/152 (1%)

Query: 2   QLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLL 61
           +LN SR+ VL+ +++ + ++++ A K++  +S D + Y+ +LK LI Q  ++L E  + +
Sbjct: 73  ELNKSRLSVLKVREECLRDVIKEAQKKLATISDDKDKYQTILKNLIYQGFVKLNENKIQV 132

Query: 62  RCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVV 121
             RK+D  L+E     A  +Y + +     ++ VD   +LP GP   + +GP+C GGV++
Sbjct: 133 VGRKEDAGLLEKATTEAAAQYKKNVG-KSIDVSVDKERFLPQGP-KSDYNGPTCCGGVIL 190

Query: 122 ASRDGKIVCENTLDARLDVVFRKKLPEIRKQL 153
           ++ +G+I+C+NTLD+RL++ F +  P IR QL
Sbjct: 191 SALEGRIICKNTLDSRLEICFDQLTPVIRTQL 222

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Dictyostelium discoideum (taxid: 44689)

>sp|P50518|VATE1_MOUSE V-type proton ATPase subunit E 1 OS=Mus musculus GN=Atp6v1e1 PE=1 SV=2

 Score = 95.1 bits (235), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 54/155 (34%), Positives = 92/155 (59%), Gaps = 15/155 (9%)

Query: 3   LNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLR 62
           +N +R+KVL+A+DDL+++++  A + +  V +D   Y+ LL GL++Q L +L EP +++R
Sbjct: 76  MNQARLKVLRARDDLITDLLNEAKQRLSKVVKDTTRYQVLLDGLVLQGLYQLLEPRMIVR 135

Query: 63  CRKDDHHLVESVLESAKEEY--AQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVV 120
           CRK D  LV++ ++ A   Y  A K  V   ++ +D   YLP             +GGV 
Sbjct: 136 CRKQDFPLVKAAVQKAIPMYKIATKKDV---DVQIDQEAYLP----------EEIAGGVE 182

Query: 121 VASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVS 155
           + + D KI   NTL++RLD++ ++ +PE+R  L  
Sbjct: 183 IYNGDRKIKVSNTLESRLDLIAQQMMPEVRGALFG 217

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	159
12585474	230	RecName: Full=V-type proton ATPase subun	1.0	0.691	1.0	1e-87
12585492	230	RecName: Full=V-type proton ATPase subun	1.0	0.691	0.993	8e-87
255537687	230	vacuolar ATP synthase subunit E, putativ	1.0	0.691	0.823	6e-72
225426050	230	PREDICTED: V-type proton ATPase subunit	1.0	0.691	0.817	7e-70
118488420	229	unknown [Populus trichocarpa]	0.987	0.685	0.802	2e-67
224118820	229	predicted protein [Populus trichocarpa]	0.987	0.685	0.802	3e-67
224123646	229	predicted protein [Populus trichocarpa]	0.981	0.681	0.794	2e-65
212276266	230	uncharacterized protein LOC100192065 [Ze	1.0	0.691	0.767	3e-65
242051543	230	hypothetical protein SORBIDRAFT_03g00136	1.0	0.691	0.767	3e-65
388495094	230	unknown [Lotus japonicus] gi|388510568|g	0.993	0.686	0.772	2e-64

>gi|12585474|sp|Q9MB46.1|VATE_CITUN RecName: Full=V-type proton ATPase subunit E; Short=V-ATPase subunit E; AltName: Full=Vacuolar proton pump subunit E gi|6729085|dbj|BAA89661.1| vacuolar H+-ATPase E subunit-1 [Citrus unshiu]

 Score =  327 bits (838), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 159/159 (100%), Positives = 159/159 (100%)

Query: 1   MQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVL 60
           MQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVL
Sbjct: 72  MQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVL 131

Query: 61  LRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVV 120
           LRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVV
Sbjct: 132 LRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVV 191

Query: 121 VASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA 159
           VASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA
Sbjct: 192 VASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA 230

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|12585492|sp|Q9SWE7.1|VATE_CITLI RecName: Full=V-type proton ATPase subunit E; Short=V-ATPase subunit E; AltName: Full=ClVE-1; AltName: Full=Vacuolar proton pump subunit E gi|5733660|gb|AAD49706.1| vacuolar V-H+ATPase subunit E [Citrus limon]

 Score =  324 bits (830), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 158/159 (99%), Positives = 158/159 (99%)

Query: 1   MQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVL 60
           MQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLK LIVQSLLRLKEPAVL
Sbjct: 72  MQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKDLIVQSLLRLKEPAVL 131

Query: 61  LRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVV 120
           LRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVV
Sbjct: 132 LRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVV 191

Query: 121 VASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA 159
           VASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA
Sbjct: 192 VASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA 230

Source: Citrus limon

Species: Citrus limon

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537687|ref|XP_002509910.1| vacuolar ATP synthase subunit E, putative [Ricinus communis] gi|223549809|gb|EEF51297.1| vacuolar ATP synthase subunit E, putative [Ricinus communis]

 Score =  275 bits (702), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 131/159 (82%), Positives = 147/159 (92%)

Query: 1   MQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVL 60
           MQLNASRIKVLQAQDD+V+ M EAA+K++LNVSRDH+ Y+KLLK LIVQSLLRLKEPAVL
Sbjct: 72  MQLNASRIKVLQAQDDVVNAMKEAATKDLLNVSRDHHVYRKLLKDLIVQSLLRLKEPAVL 131

Query: 61  LRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVV 120
           LRCRKDD HL+ESVL+SAKEEYA+K+ VH PEIIVD+H++LPP P HHN HGP CSGGVV
Sbjct: 132 LRCRKDDLHLLESVLDSAKEEYAEKVNVHAPEIIVDNHVFLPPAPSHHNVHGPYCSGGVV 191

Query: 121 VASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA 159
           +ASRDGKIVCENTLDARLDVVFRKKLPEIRK+L SQVAA
Sbjct: 192 LASRDGKIVCENTLDARLDVVFRKKLPEIRKKLFSQVAA 230

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225426050|ref|XP_002274995.1| PREDICTED: V-type proton ATPase subunit E [Vitis vinifera] gi|297742293|emb|CBI34442.3| unnamed protein product [Vitis vinifera]

 Score =  268 bits (684), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 130/159 (81%), Positives = 144/159 (90%)

Query: 1   MQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVL 60
           MQLNASRIKVLQAQDDLVS+M EAASKE+L+VS DH+ YK+LL+ L+VQSLLRLKEPAVL
Sbjct: 72  MQLNASRIKVLQAQDDLVSSMKEAASKELLHVSHDHHVYKRLLRDLVVQSLLRLKEPAVL 131

Query: 61  LRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVV 120
           LRCRKDD HLVES+L+SAK+EYA K  V+PPEIIVDH +YLPP P HH+AHGP CSGGVV
Sbjct: 132 LRCRKDDLHLVESILDSAKDEYAGKANVYPPEIIVDHQVYLPPAPSHHHAHGPFCSGGVV 191

Query: 121 VASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA 159
           +ASRDGKIVCENTLDARLDVVFRKKLPEIRK L  QVAA
Sbjct: 192 LASRDGKIVCENTLDARLDVVFRKKLPEIRKWLFGQVAA 230

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118488420|gb|ABK96025.1| unknown [Populus trichocarpa]

 Score =  259 bits (663), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 126/157 (80%), Positives = 140/157 (89%)

Query: 1   MQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVL 60
           MQLNASRIKVLQAQDD+V++M + A K++LNVS+ H+ YK LLK LIVQSLLRLKEPAVL
Sbjct: 72  MQLNASRIKVLQAQDDVVNSMKDVAGKDLLNVSQHHHRYKHLLKDLIVQSLLRLKEPAVL 131

Query: 61  LRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVV 120
           LRCRKDDHHLVESVL SAKEEYA+K  V+PPE+IVDH +YLPP P HHNAHGP CSGGVV
Sbjct: 132 LRCRKDDHHLVESVLNSAKEEYAEKANVYPPEVIVDHDVYLPPAPSHHNAHGPFCSGGVV 191

Query: 121 VASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQV 157
           +ASRDGKIV EN+LDARLDVVFRKKLPEIRK LV QV
Sbjct: 192 LASRDGKIVFENSLDARLDVVFRKKLPEIRKLLVGQV 228

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224118820|ref|XP_002331357.1| predicted protein [Populus trichocarpa] gi|222874395|gb|EEF11526.1| predicted protein [Populus trichocarpa]

 Score =  259 bits (661), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 126/157 (80%), Positives = 140/157 (89%)

Query: 1   MQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVL 60
           MQLNASRIKVLQAQDD+V++M + A K++LNVS+ H+ YK LLK LIVQSLLRLKEPAVL
Sbjct: 72  MQLNASRIKVLQAQDDVVNSMKDVAGKDLLNVSQHHHRYKHLLKDLIVQSLLRLKEPAVL 131

Query: 61  LRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVV 120
           LRCRKDDHHLVESVL SAKEEYA+K  V+PPE+IVDH +YLPP P HHNAHGP CSGGVV
Sbjct: 132 LRCRKDDHHLVESVLHSAKEEYAEKANVYPPEVIVDHDVYLPPAPSHHNAHGPFCSGGVV 191

Query: 121 VASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQV 157
           +ASRDGKIV EN+LDARLDVVFRKKLPEIRK LV QV
Sbjct: 192 LASRDGKIVFENSLDARLDVVFRKKLPEIRKLLVGQV 228

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123646|ref|XP_002319131.1| predicted protein [Populus trichocarpa] gi|118481235|gb|ABK92567.1| unknown [Populus trichocarpa] gi|118486319|gb|ABK95001.1| unknown [Populus trichocarpa] gi|222857507|gb|EEE95054.1| predicted protein [Populus trichocarpa]

 Score =  253 bits (647), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 124/156 (79%), Positives = 138/156 (88%)

Query: 1   MQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVL 60
           MQLNASRIKVLQAQDD+V++M + A KE+LNVS++ + YK LLK LIVQSLLRLKEPAVL
Sbjct: 72  MQLNASRIKVLQAQDDMVNSMKDGAGKELLNVSQNQHHYKNLLKDLIVQSLLRLKEPAVL 131

Query: 61  LRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVV 120
           LRCRKDDH+LVESVL SAK+EYA+K  V PPEIIVDH+IYLPP P HHNAHG SCSGGVV
Sbjct: 132 LRCRKDDHNLVESVLHSAKDEYAEKANVFPPEIIVDHNIYLPPAPSHHNAHGLSCSGGVV 191

Query: 121 VASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQ 156
           +ASRDGKIV EN+LDARLDV FRKKLPEIRK LV Q
Sbjct: 192 LASRDGKIVFENSLDARLDVAFRKKLPEIRKLLVGQ 227

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|212276266|ref|NP_001130960.1| uncharacterized protein LOC100192065 [Zea mays] gi|194690560|gb|ACF79364.1| unknown [Zea mays] gi|195628324|gb|ACG35992.1| vacuolar ATP synthase subunit E [Zea mays] gi|414875669|tpg|DAA52800.1| TPA: Vacuolar ATP synthase subunit E [Zea mays]

 Score =  252 bits (644), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 122/159 (76%), Positives = 138/159 (86%)

Query: 1   MQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVL 60
           MQLNASRIKVLQAQDDLV++M+E+A KE+L +SRDH +YKKLLK LIVQSLLRLKEPAVL
Sbjct: 72  MQLNASRIKVLQAQDDLVTDMLESARKELLCISRDHPTYKKLLKTLIVQSLLRLKEPAVL 131

Query: 61  LRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVV 120
           LRCRK+D  LV+ VLESA+ EYA K +V+PPEI+VD  IYLP  P H+ A GPSCSGGVV
Sbjct: 132 LRCRKEDLQLVDLVLESARNEYADKAKVYPPEIVVDRQIYLPSAPSHYQAPGPSCSGGVV 191

Query: 121 VASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA 159
           +ASRDGKIVCENTLDARL VVFRKKLPEIR+ L  QVAA
Sbjct: 192 LASRDGKIVCENTLDARLQVVFRKKLPEIRQSLFGQVAA 230

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242051543|ref|XP_002454917.1| hypothetical protein SORBIDRAFT_03g001360 [Sorghum bicolor] gi|241926892|gb|EES00037.1| hypothetical protein SORBIDRAFT_03g001360 [Sorghum bicolor]

 Score =  252 bits (644), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 122/159 (76%), Positives = 138/159 (86%)

Query: 1   MQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVL 60
           MQLNASRIKVLQAQDDLV++M+E+A K++L +SRDH +YKKLLK LIVQSLLRLKEPAVL
Sbjct: 72  MQLNASRIKVLQAQDDLVTDMLESARKDLLCISRDHQTYKKLLKILIVQSLLRLKEPAVL 131

Query: 61  LRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVV 120
           LRCRK+D  LV+SVLESA  EYA K  V+PPEI+VD HI+LP  P H+ A GPSCSGGVV
Sbjct: 132 LRCRKEDLELVDSVLESASNEYADKANVYPPEIVVDRHIFLPSAPSHYQAPGPSCSGGVV 191

Query: 121 VASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA 159
           +ASRDGKIVCENTLDARL VVFRKKLPEIR+ L  QVAA
Sbjct: 192 LASRDGKIVCENTLDARLQVVFRKKLPEIRQSLFVQVAA 230

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388495094|gb|AFK35613.1| unknown [Lotus japonicus] gi|388510568|gb|AFK43350.1| unknown [Lotus japonicus]

 Score =  250 bits (638), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 122/158 (77%), Positives = 135/158 (85%)

Query: 1   MQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVL 60
           MQLNASRIKVLQAQDD+V+ M E+A+KE+LN  RDH+ YK LLK LIVQ LLRLKEPAVL
Sbjct: 72  MQLNASRIKVLQAQDDVVNKMKESATKELLNAGRDHHVYKNLLKDLIVQGLLRLKEPAVL 131

Query: 61  LRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVV 120
           LRCRKDD  LVE+VL+SA EEYA K  V+ PEIIVDH+IYLP  P H+ +H P CSGGVV
Sbjct: 132 LRCRKDDLQLVEAVLDSAAEEYAGKANVNQPEIIVDHNIYLPSAPSHYESHEPYCSGGVV 191

Query: 121 VASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVA 158
           +ASRDGKIVCENTLDARLDVVFRKKLPEIRKQL  QVA
Sbjct: 192 LASRDGKIVCENTLDARLDVVFRKKLPEIRKQLFGQVA 229

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	159
TAIR|locus:2136088	230	TUF "AT4G11150" [Arabidopsis t	1.0	0.691	0.666	2.3e-48
TAIR|locus:2024527	237	VHA-E3 "AT1G64200" [Arabidopsi	1.0	0.670	0.630	1.4e-46
TAIR|locus:2077893	235	VHA-E2 "vacuolar H+-ATPase sub	0.962	0.651	0.606	2.2e-43
UNIPROTKB|F1S5M0	226	ATP6V1E2 "Uncharacterized prot	0.874	0.615	0.38	4.9e-21
UNIPROTKB|Q32LB7	226	ATP6V1E2 "V-type proton ATPase	0.874	0.615	0.38	8e-21
ZFIN|ZDB-GENE-041212-51	226	atp6v1e1a "ATPase, H+ transpor	0.880	0.619	0.324	3.5e-20
FB|FBgn0015324	226	Vha26 "Vacuolar H[+]-ATPase 26	0.874	0.615	0.368	1.5e-19
UNIPROTKB|Q96A05	226	ATP6V1E2 "V-type proton ATPase	0.874	0.615	0.373	1.5e-19
UNIPROTKB|E2QUI3	226	ATP6V1E2 "Uncharacterized prot	0.874	0.615	0.38	1.9e-19
ZFIN|ZDB-GENE-030131-4183	226	si:ch211-266k8.3 "si:ch211-266	0.880	0.619	0.317	2.5e-19

TAIR|locus:2136088 TUF "AT4G11150" [Arabidopsis thaliana (taxid:3702)]

 Score = 505 (182.8 bits), Expect = 2.3e-48, P = 2.3e-48
 Identities = 106/159 (66%), Positives = 123/159 (77%)

Query:     1 MQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVL 60
             MQLNASRIKVLQAQDD+V+ M + A+K++LNVSRD  +YK+LLK LIVQ LLRLKEP+VL
Sbjct:    72 MQLNASRIKVLQAQDDIVNAMKDQAAKDLLNVSRDEYAYKQLLKDLIVQCLLRLKEPSVL 131

Query:    61 LRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLXXXXXXXXXXXXSCSGGVV 120
             LRCR++D  LVE+VL+ AKEEYA K +VH PE+ VD  I+L             CSGGVV
Sbjct:   132 LRCREEDLGLVEAVLDDAKEEYAGKAKVHAPEVAVDTKIFLPPPPKSNDPHGLHCSGGVV 191

Query:   121 VASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA 159
             +ASRDGKIVCENTLDARLDV FR KLP IRK L  QV A
Sbjct:   192 LASRDGKIVCENTLDARLDVAFRMKLPVIRKSLFGQVTA 230

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=ISS

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP;NAS

GO:0015986 "ATP synthesis coupled proton transport" evidence=ISS

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0033178 "proton-transporting two-sector ATPase complex, catalytic domain" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA;TAS

GO:0009409 "response to cold" evidence=IEP

GO:0005773 "vacuole" evidence=IDA

GO:0007030 "Golgi organization" evidence=RCA;IMP

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0009832 "plant-type cell wall biogenesis" evidence=IMP

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0000325 "plant-type vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IEP

GO:0009651 "response to salt stress" evidence=IEP;RCA

GO:0005829 "cytosol" evidence=RCA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006096 "glycolysis" evidence=RCA

GO:0006816 "calcium ion transport" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0006972 "hyperosmotic response" evidence=RCA

GO:0007033 "vacuole organization" evidence=RCA

GO:0009266 "response to temperature stimulus" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

TAIR|locus:2024527 VHA-E3 "AT1G64200" [Arabidopsis thaliana (taxid:3702)]

 Score = 488 (176.8 bits), Expect = 1.4e-46, P = 1.4e-46
 Identities = 104/165 (63%), Positives = 123/165 (74%)

Query:     1 MQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRD------HNSYKKLLKGLIVQSLLRL 54
             MQLNASRIKVLQAQDD+V+ M E A+K++L VS+       H+ YK LLK LIVQ LLRL
Sbjct:    72 MQLNASRIKVLQAQDDIVNAMKEEAAKQLLKVSQHGFFNHHHHQYKHLLKDLIVQCLLRL 131

Query:    55 KEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLXXXXXXXXXXXXS 114
             KEPAVLLRCR++D  +VES+L+ A EEY +K +VH PEIIVD  I+L            S
Sbjct:   132 KEPAVLLRCREEDLDIVESMLDDASEEYCKKAKVHAPEIIVDKDIFLPPAPSDDDPHALS 191

Query:   115 CSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA 159
             C+GGVV+ASRDGKIVCENTLDARL+V FR KLPEIRK L  +V A
Sbjct:   192 CAGGVVLASRDGKIVCENTLDARLEVAFRNKLPEIRKSLFGKVGA 236

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=ISS

GO:0015986 "ATP synthesis coupled proton transport" evidence=ISS

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0033178 "proton-transporting two-sector ATPase complex, catalytic domain" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

TAIR|locus:2077893 VHA-E2 "vacuolar H+-ATPase subunit E isoform 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 458 (166.3 bits), Expect = 2.2e-43, P = 2.2e-43
 Identities = 94/155 (60%), Positives = 120/155 (77%)

Query:     2 QLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLL 61
             QLNASRIK LQAQDD+V+ M ++A+K++L VS D N+YKKLLK LI++SLLRLKEP+VLL
Sbjct:    73 QLNASRIKYLQAQDDVVTAMKDSAAKDLLRVSNDKNNYKKLLKSLIIESLLRLKEPSVLL 132

Query:    62 RCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLXXXXXXXXXXXXS--CSGGV 119
             RCR+ D  +VESV+E AK +YA+K +V  P+I +D  ++L               CSGGV
Sbjct:   133 RCREMDKKVVESVIEDAKRQYAEKAKVGSPKITIDEKVFLPPPPNPKLPDSHDPHCSGGV 192

Query:   120 VVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLV 154
             V+AS+DGKIVCENTLDARLDV FR+KLP+IR +LV
Sbjct:   193 VLASQDGKIVCENTLDARLDVAFRQKLPQIRTRLV 227

GO:0005634 "nucleus" evidence=ISM

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=ISS

GO:0008553 "hydrogen-exporting ATPase activity, phosphorylative mechanism" evidence=ISS

GO:0015986 "ATP synthesis coupled proton transport" evidence=ISS

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0033178 "proton-transporting two-sector ATPase complex, catalytic domain" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

UNIPROTKB|F1S5M0 ATP6V1E2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 247 (92.0 bits), Expect = 4.9e-21, P = 4.9e-21
 Identities = 57/150 (38%), Positives = 88/150 (58%)

Query:     4 NASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRC 63
             N +R+KVL+A++DL+S ++  A   +  +  D   Y+ LL  L++Q LLRL EP V++RC
Sbjct:    77 NQARLKVLRARNDLISELLNDAKLSLSRIVADQEVYQALLDKLVLQGLLRLLEPVVIIRC 136

Query:    64 RKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLXXXXXXXXXXXXSCSGGVVVAS 123
             R  D  LV++ ++ A  +Y      H  E+ VD  + L              +GGV V S
Sbjct:   137 RPQDLFLVKAAVQKAIPQYTTISHKHV-EVQVDQEVQLAT----------DAAGGVEVYS 185

Query:   124 RDGKIVCENTLDARLDVVFRKKLPEIRKQL 153
              D +I   NTL++RLD++F++K+PEIRK L
Sbjct:   186 GDQRIKVSNTLESRLDLLFQQKMPEIRKAL 215

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0008553 "hydrogen-exporting ATPase activity, phosphorylative mechanism" evidence=IEA

GO:0001669 "acrosomal vesicle" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0033178 "proton-transporting two-sector ATPase complex, catalytic domain" evidence=IEA

UNIPROTKB|Q32LB7 ATP6V1E2 "V-type proton ATPase subunit E 2" [Bos taurus (taxid:9913)]

 Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
 Identities = 57/150 (38%), Positives = 89/150 (59%)

Query:     4 NASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRC 63
             N +R+KVL+A++DL+S ++  A   +  +  D   Y+ LL  L++Q LLRL EP V++RC
Sbjct:    77 NQARLKVLRARNDLISELLNDAKLRLSRIVTDPEFYQGLLDKLVLQGLLRLLEPVVIVRC 136

Query:    64 RKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLXXXXXXXXXXXXSCSGGVVVAS 123
             R  DH LVE+ ++ A  +Y   +     E+ VD  + L              +GGV V S
Sbjct:   137 RPQDHFLVEAAVQRAIPQYTA-VSHRCVEVQVDKEVQLATDT----------TGGVEVYS 185

Query:   124 RDGKIVCENTLDARLDVVFRKKLPEIRKQL 153
              D +I+  NTL++RLD++ ++K+PEIRK L
Sbjct:   186 SDQRIMVSNTLESRLDLLSQQKMPEIRKAL 215

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0008553 "hydrogen-exporting ATPase activity, phosphorylative mechanism" evidence=IEA

GO:0001669 "acrosomal vesicle" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0033178 "proton-transporting two-sector ATPase complex, catalytic domain" evidence=IEA

ZFIN|ZDB-GENE-041212-51 atp6v1e1a "ATPase, H+ transporting, lysosomal , V1 subunit E1a" [Danio rerio (taxid:7955)]

 Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
 Identities = 49/151 (32%), Positives = 95/151 (62%)

Query:     3 LNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLR 62
             +N +R+KVL+A+DD++ +++  A + +  +++D N Y+ LL+GL++Q   +L EP V++R
Sbjct:    76 MNQARLKVLKARDDMIKDLLNDARERLATIAKDPNQYQTLLEGLVLQGFYQLLEPRVIIR 135

Query:    63 CRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLXXXXXXXXXXXXSCSGGVVVA 122
             CRK+D  +V++ ++     Y + ++ +  E+ +D + +L              SGGV V 
Sbjct:   136 CRKEDVAMVQTAVQKNIPIYKEAVKSNI-EVRIDENTFLSP----------DISGGVEVY 184

Query:   123 SRDGKIVCENTLDARLDVVFRKKLPEIRKQL 153
             + DG+I   NTL++RLD++ ++ +P+IR  L
Sbjct:   185 NADGRIKASNTLESRLDLLAQQMMPDIRVSL 215

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0033178 "proton-transporting two-sector ATPase complex, catalytic domain" evidence=IEA

FB|FBgn0015324 Vha26 "Vacuolar H[+]-ATPase 26kD subunit" [Drosophila melanogaster (taxid:7227)]

 Score = 233 (87.1 bits), Expect = 1.5e-19, P = 1.5e-19
 Identities = 56/152 (36%), Positives = 96/152 (63%)

Query:     3 LNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLR 62
             LN +R+KVL+ ++D VS++++ A K +  V+++ + Y+ +L  LIVQ L ++ EP V+LR
Sbjct:    76 LNQARLKVLKVREDHVSSVLDDARKRLGEVTKNQSEYETVLTKLIVQGLFQIMEPKVILR 135

Query:    63 CRKDDHHLVESVLESAKEEYAQKLQVHPP-EIIVDHHIYLXXXXXXXXXXXXSCSGGVVV 121
             CR+ D  LV +VL +A E+Y  K Q++   E+ +D   +L            +C GGV +
Sbjct:   136 CREVDVPLVRNVLPAAVEQY--KAQINQNVELFIDEKDFLSAD---------TC-GGVEL 183

Query:   122 ASRDGKIVCENTLDARLDVVFRKKLPEIRKQL 153
              + +G+I   NTL++RLD++ ++ +PEIR  L
Sbjct:   184 LALNGRIKVPNTLESRLDLISQQLVPEIRNAL 215

GO:0000221 "vacuolar proton-transporting V-type ATPase, V1 domain" evidence=ISS;NAS

GO:0015992 "proton transport" evidence=NAS

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0033181 "plasma membrane proton-transporting V-type ATPase complex" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|Q96A05 ATP6V1E2 "V-type proton ATPase subunit E 2" [Homo sapiens (taxid:9606)]

 Score = 233 (87.1 bits), Expect = 1.5e-19, P = 1.5e-19
 Identities = 56/150 (37%), Positives = 88/150 (58%)

Query:     4 NASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRC 63
             N +R+KVL+A++DL+S+++  A   +  +  D   Y+ LL  L++Q LLRL EP +++RC
Sbjct:    77 NQARLKVLRARNDLISDLLSEAKLRLSRIVEDPEVYQGLLDKLVLQGLLRLLEPVMIVRC 136

Query:    64 RKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLXXXXXXXXXXXXSCSGGVVVAS 123
             R  D  LVE+ ++ A  EY    Q H  E+ +D   YL            + +GGV V S
Sbjct:   137 RPQDLLLVEAAVQKAIPEYMTISQKHV-EVQIDKEAYLAV----------NAAGGVEVYS 185

Query:   124 RDGKIVCENTLDARLDVVFRKKLPEIRKQL 153
              + +I   NTL++RLD+  ++K+PEIR  L
Sbjct:   186 GNQRIKVSNTLESRLDLSAKQKMPEIRMAL 215

GO:0033178 "proton-transporting two-sector ATPase complex, catalytic domain" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0001669 "acrosomal vesicle" evidence=IEA

GO:0008553 "hydrogen-exporting ATPase activity, phosphorylative mechanism" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0005829 "cytosol" evidence=TAS

GO:0006879 "cellular iron ion homeostasis" evidence=TAS

GO:0008286 "insulin receptor signaling pathway" evidence=TAS

GO:0033572 "transferrin transport" evidence=TAS

GO:0051701 "interaction with host" evidence=TAS

GO:0055085 "transmembrane transport" evidence=TAS

GO:0090382 "phagosome maturation" evidence=TAS

UNIPROTKB|E2QUI3 ATP6V1E2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
 Identities = 57/150 (38%), Positives = 88/150 (58%)

Query:     4 NASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRC 63
             N +R+KVL+A+DDL+S ++  A   +  +  D   Y+ LL  L++Q LLRL EP V++RC
Sbjct:    77 NQARLKVLRARDDLISELLNDAKLRLSRIVADPEVYQGLLDKLVLQGLLRLLEPVVIIRC 136

Query:    64 RKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLXXXXXXXXXXXXSCSGGVVVAS 123
             R  D  LVE+ +  A  EY   +     E+ VD  ++L            + +GGV V S
Sbjct:   137 RPQDLLLVEAAVLKAIPEY-MAVSHKCVEVQVDQEVHLSM----------NAAGGVEVYS 185

Query:   124 RDGKIVCENTLDARLDVVFRKKLPEIRKQL 153
              + +I   NTL++RLD++ ++K+PEIRK L
Sbjct:   186 GNQRIKVSNTLESRLDLLAQQKMPEIRKAL 215

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0008553 "hydrogen-exporting ATPase activity, phosphorylative mechanism" evidence=IEA

GO:0001669 "acrosomal vesicle" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0033178 "proton-transporting two-sector ATPase complex, catalytic domain" evidence=IEA

ZFIN|ZDB-GENE-030131-4183 si:ch211-266k8.3 "si:ch211-266k8.3" [Danio rerio (taxid:7955)]

 Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
 Identities = 48/151 (31%), Positives = 94/151 (62%)

Query:     3 LNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLR 62
             +N +R+KVL+A+DD++ +++  A + +  +++D N Y+ LL+GL++Q   +L E  V++R
Sbjct:    76 MNQARLKVLKARDDMIKDLLNDARERLATIAKDPNQYQTLLEGLVLQGFYQLLESRVIIR 135

Query:    63 CRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLXXXXXXXXXXXXSCSGGVVVA 122
             CRK+D  +V++ ++     Y + ++ +  E+ +D + +L              SGGV V 
Sbjct:   136 CRKEDVAMVQTAVQKNIPIYKEAVKSNI-EVRIDENTFLSP----------DISGGVEVY 184

Query:   123 SRDGKIVCENTLDARLDVVFRKKLPEIRKQL 153
             + DG+I   NTL++RLD++ ++ +P+IR  L
Sbjct:   185 NADGRIKASNTLESRLDLLAQQMMPDIRVSL 215

GO:0033178 "proton-transporting two-sector ATPase complex, catalytic domain" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q40272	VATE_MESCR	No assigned EC number	0.7161	0.9685	0.6814	N/A	no
O23948	VATE_GOSHI	No assigned EC number	0.7485	0.9937	0.6666	N/A	no
Q39258	VATE1_ARATH	No assigned EC number	0.6981	1.0	0.6913	yes	no
Q9SWE7	VATE_CITLI	No assigned EC number	0.9937	1.0	0.6913	N/A	no
Q41396	VATE_SPIOL	No assigned EC number	0.7421	0.9937	0.6899	N/A	no
Q9MB46	VATE_CITUN	No assigned EC number	1.0	1.0	0.6913	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	159
pfam01991	195	pfam01991, vATP-synt_E, ATP synthase (E/31 kDa) su	1e-50
COG1390	194	COG1390, NtpE, Archaeal/vacuolar-type H+-ATPase su	2e-11
PRK03963	198	PRK03963, PRK03963, V-type ATP synthase subunit E;	8e-07
PRK02292	188	PRK02292, PRK02292, V-type ATP synthase subunit E;	1e-04

>gnl|CDD|216833 pfam01991, vATP-synt_E, ATP synthase (E/31 kDa) subunit

 Score =  160 bits (407), Expect = 1e-50
 Identities = 65/153 (42%), Positives = 94/153 (61%), Gaps = 15/153 (9%)

Query: 1   MQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVL 60
              N +R+KVL A+++L+ ++ E A + + N+S D + YK LLK LI Q+L++L EP V+
Sbjct: 57  NAKNEARLKVLNAREELLDSVFEEAKERLANLSEDKDEYKDLLKDLIKQALVKLGEPKVI 116

Query: 61  LRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVV 120
           +R R++D  LV+S L+ AKEEY +K      E I D+                 C GGVV
Sbjct: 117 VRSREEDEELVKSALDEAKEEYKEKTGKDTVETIGDN---------------IDCIGGVV 161

Query: 121 VASRDGKIVCENTLDARLDVVFRKKLPEIRKQL 153
           + + DGKI  +NTL+ARL+ VF + LPEIRK L
Sbjct: 162 LETEDGKIRVDNTLEARLERVFEQLLPEIRKAL 194

This family includes the vacuolar ATP synthase E subunit, as well as the archaebacterial ATP synthase E subunit. Length = 195

>gnl|CDD|224308 COG1390, NtpE, Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion]

 Score = 58.9 bits (143), Expect = 2e-11
 Identities = 41/151 (27%), Positives = 75/151 (49%), Gaps = 27/151 (17%)

Query: 3   LNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLR 62
           L  +R K+L+A+++++ ++ EA  +++ N++ D     + L+ L++++L +L    +++ 
Sbjct: 68  LLEARRKLLEAKEEILESVFEAVEEKLRNIASD--PEYESLQELLIEALEKLLGGELVVY 125

Query: 63  CRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVA 122
             + D  LVE +L   K                          G     G    GGVVV 
Sbjct: 126 LNEKDKALVEQILRELK-------------------------IGVELGEGIDIIGGVVVE 160

Query: 123 SRDGKIVCENTLDARLDVVFRKKLPEIRKQL 153
           SRDGKI  +NT ++ L+ V  + LPEI ++L
Sbjct: 161 SRDGKIRLDNTFESILERVLEELLPEISEKL 191

Length = 194

>gnl|CDD|167649 PRK03963, PRK03963, V-type ATP synthase subunit E; Provisional

 Score = 46.3 bits (110), Expect = 8e-07
 Identities = 36/133 (27%), Positives = 63/133 (47%), Gaps = 22/133 (16%)

Query: 7   RIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKD 66
           R K L  Q++L+S ++EA  + +  +  D   Y + LK L  +++  L E  V++R  + 
Sbjct: 72  RRKRLAVQEELISEVLEAVRERLAELPEDE--YFETLKALTKEAVEELGEDKVVVRSNER 129

Query: 67  DHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDG 126
              L++S LE  ++E          EI +   I                 GGV+V ++DG
Sbjct: 130 TLKLIDSRLEEIRDELGDV------EIELGEPI--------------ETIGGVIVETKDG 169

Query: 127 KIVCENTLDARLD 139
            I  +NT +AR++
Sbjct: 170 TIRVDNTFEARME 182

Length = 198

>gnl|CDD|235026 PRK02292, PRK02292, V-type ATP synthase subunit E; Provisional

 Score = 40.4 bits (95), Expect = 1e-04
 Identities = 40/155 (25%), Positives = 65/155 (41%), Gaps = 35/155 (22%)

Query: 3   LNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLR 62
           L A R + L A+ +++ ++      E+ ++  D    ++L K L+  +        V + 
Sbjct: 68  LEAKRER-LNARKEVLEDVRNQVEDEIASLDGDKR--EELTKSLLDAA----DADGVRVY 120

Query: 63  CRKDDHHLVESVLESAKE-EYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVV 121
            RKDD  LV+S+L      EYA  +                            C GGVVV
Sbjct: 121 SRKDDEDLVKSLLSDYDGLEYAGNID---------------------------CLGGVVV 153

Query: 122 ASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQ 156
            S DG++   NT D+ L+ V+   L EI  +L  +
Sbjct: 154 ESEDGRVRVNNTFDSILEDVWEDNLKEISDRLFGE 188

Length = 188

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	159
KOG1664	220	consensus Vacuolar H+-ATPase V1 sector, subunit E	100.0
PRK03963	198	V-type ATP synthase subunit E; Provisional	99.97
PF01991	198	vATP-synt_E: ATP synthase (E/31 kDa) subunit; Inte	99.95
PRK02292	188	V-type ATP synthase subunit E; Provisional	99.95
PRK01194	185	V-type ATP synthase subunit E; Provisional	99.91
COG1390	194	NtpE Archaeal/vacuolar-type H+-ATPase subunit E [E	99.89
PRK01558	198	V-type ATP synthase subunit E; Provisional	99.7
PRK01005	207	V-type ATP synthase subunit E; Provisional	99.53
TIGR03825	255	FliH_bacil flagellar assembly protein FliH. This b	99.06
PRK06937	204	type III secretion system protein; Reviewed	99.0
PRK06669	281	fliH flagellar assembly protein H; Validated	98.94
PRK06328	223	type III secretion system protein; Validated	98.9
PRK13386	236	fliH flagellar assembly protein H; Provisional	98.76
PF02108	128	FliH: Flagellar assembly protein FliH; InterPro: I	98.73
PRK05687	246	fliH flagellar assembly protein H; Validated	98.63
PRK09098	233	type III secretion system protein HrpB; Validated	98.62
COG1317	234	FliH Flagellar biosynthesis/type III secretory pat	98.61
PRK06032	199	fliH flagellar assembly protein H; Validated	98.28
TIGR02499	166	HrpE_YscL_not type III secretion apparatus protein	98.2
TIGR03321	246	alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B.	97.67
PRK13436	179	F0F1 ATP synthase subunit delta; Provisional	97.58
PRK13430	271	F0F1 ATP synthase subunit delta; Provisional	97.42
PF06188	191	HrpE: HrpE/YscL/FliH and V-type ATPase subunit E;	97.31
PRK13434	184	F0F1 ATP synthase subunit delta; Provisional	97.24
PF06635	207	NolV: Nodulation protein NolV; InterPro: IPR010586	97.22
PRK13428	445	F0F1 ATP synthase subunit delta; Provisional	97.2
PRK13441	180	F0F1 ATP synthase subunit delta; Provisional	96.57
COG0712	178	AtpH F0F1-type ATP synthase, delta subunit (mitoch	96.55
PRK05758	177	F0F1 ATP synthase subunit delta; Validated	96.14
TIGR01145	172	ATP_synt_delta ATP synthase, F1 delta subunit. Thi	95.96
PRK13429	181	F0F1 ATP synthase subunit delta; Provisional	95.66
CHL00119	184	atpD ATP synthase CF1 delta subunit; Validated	94.3
PRK08474	176	F0F1 ATP synthase subunit delta; Validated	92.68
PF00213	172	OSCP: ATP synthase delta (OSCP) subunit; InterPro:	91.16
KOG1662	210	consensus Mitochondrial F1F0-ATP synthase, subunit	89.7
PRK14474	250	F0F1 ATP synthase subunit B; Provisional	86.01

>KOG1664 consensus Vacuolar H+-ATPase V1 sector, subunit E [Energy production and conversion]

Probab=100.00  E-value=3.4e-39  Score=248.67  Aligned_cols=147  Identities=50%  Similarity=0.791  Sum_probs=142.7

Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhhCCCcEEEEeccccHHHHHHHHHHHHH
Q 031468            1 MQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKE   80 (159)
Q Consensus         1 ~~~n~aR~~~L~ar~~~i~~v~~~a~~~L~~~~~~~~~Y~~~L~~Li~e~~~~l~~~~v~v~~~~~D~~~v~~~i~~~~~   80 (159)
                      |.+|++|+++|++|+++++.+|++|+++|...+.+++.|+.+|.+||.||+..|.+|.++|+||+.|..+|+..++++..
T Consensus        72 ~~lN~~RlKvL~ar~d~i~~i~~ea~k~Ls~i~~~~~~Y~~lL~~LivQ~Ll~L~Ep~~Ivrcre~D~~lVe~~~~~a~~  151 (220)
T KOG1664|consen   72 NLLNQSRLKVLRARDDIIDDILDEAKKRLSKVSKDTDRYKKLLKDLIVQGLLQLLEPEVIVRCREKDLKLVEAALPKAIE  151 (220)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHhCCCeeEEeehhhhhHHHHHHHHHHHH
Confidence            56899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhCCCCCeEEecCccCCCCCCCCCCCCCCCccccEEEEecCCcEEEeccHHHHHHHHHHhchHHHHHHhcCCCC
Q 031468           81 EYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVA  158 (159)
Q Consensus        81 ~~~~~~~~~~~~v~vd~~~~L~~~~~~~~~~~~~~~GGviv~s~dg~i~vdnTle~RL~~~~~~~~p~I~~~LF~~~~  158 (159)
                      +|+...|. +.++.+|++.|||+          +|.|||++.|.||+|.|+|||++||+.++++.+|+||+.|||.++
T Consensus       152 ~y~~ka~~-~~e~~id~~~fL~~----------~~~GGVvl~s~dgkI~v~NTLesRLeli~~q~lPeIR~aLFG~n~  218 (220)
T KOG1664|consen  152 EYKEKAGV-GVEVQIDKKDFLPP----------DVAGGVVLYSRDGKIKVSNTLESRLELIAEQKLPEIRKALFGANP  218 (220)
T ss_pred             HHHHHhcC-CceeeechhccCCc----------cccCCeEEEcCCCceEecCcHHHHHHHHHHHhhHHHHHHhcCCCC
Confidence            99999998 49999999999987          799999999999999999999999999999999999999999876

>PRK03963 V-type ATP synthase subunit E; Provisional

Probab=99.97  E-value=1.6e-29  Score=197.33  Aligned_cols=131  Identities=30%  Similarity=0.458  Sum_probs=118.3

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhhCCCcEEEEeccccHHHHHHHHHHHHHHH
Q 031468            3 LNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEY   82 (159)
Q Consensus         3 ~n~aR~~~L~ar~~~i~~v~~~a~~~L~~~~~~~~~Y~~~L~~Li~e~~~~l~~~~v~v~~~~~D~~~v~~~i~~~~~~~   82 (159)
                      .+++|+++|.+|+++++++|++|+++|.+++.+  +|+++|.+||.+|+..+++++++|+|+|.|..++++++.++.+.+
T Consensus        68 ~~e~r~~~l~ar~el~~~v~~~a~~~l~~~~~~--~Y~~~l~~li~~a~~~l~~~~i~i~~~~~D~~~~~~~~~~~~~~~  145 (198)
T PRK03963         68 KLEVRRKRLAVQEELISEVLEAVRERLAELPED--EYFETLKALTKEAVEELGEDKVVVRSNERTLKLIDSRLEEIRDEL  145 (198)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh--hHHHHHHHHHHHHHHHhCCCcEEEEEccccHHHHHHHHHHHHHHh
Confidence            467899999999999999999999999999887  799999999999999999889999999999999999988776543


Q ss_pred             HHhhCCCCCeEEecCccCCCCCCCCCCCCCCCccccEEEEecCCcEEEeccHHHHHHHHHHhchHHHHHHhcC
Q 031468           83 AQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVS  155 (159)
Q Consensus        83 ~~~~~~~~~~v~vd~~~~L~~~~~~~~~~~~~~~GGviv~s~dg~i~vdnTle~RL~~~~~~~~p~I~~~LF~  155 (159)
                      +      ++++.++.       |       .+|.|||||+|.+|+|+|||||++||+.+|++++|+|+++|||
T Consensus       146 ~------~~~i~~~~-------~-------~~~~GGvil~s~~g~i~~dnT~e~~l~~~~~~~~~~i~~~LF~  198 (198)
T PRK03963        146 G------DVEIELGE-------P-------IETIGGVIVETKDGTIRVDNTFEARMERLESELRAKIAKALFG  198 (198)
T ss_pred             C------CeEEEECC-------C-------CCccceEEEEeCCCCEEEeCcHHHHHHHHHHHhHHHHHHHhcC
Confidence            2      35666652       1       3789999999999999999999999999999999999999997

>PF01991 vATP-synt_E: ATP synthase (E/31 kDa) subunit; InterPro: IPR002842 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.95  E-value=4.3e-28  Score=187.94  Aligned_cols=140  Identities=32%  Similarity=0.491  Sum_probs=120.9

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhhCCCcEEEEeccccHHHHHHHHHHHHHHH
Q 031468            3 LNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEY   82 (159)
Q Consensus         3 ~n~aR~~~L~ar~~~i~~v~~~a~~~L~~~~~~~~~Y~~~L~~Li~e~~~~l~~~~v~v~~~~~D~~~v~~~i~~~~~~~   82 (159)
                      .+++|+.+|.+|+++++++|++++++|.+++.+++.|+++|.+||.+++..+++++++|+|++.|.+++++++..+...|
T Consensus        59 ~~~~r~~~l~~k~~~i~~v~~~~~~~L~~~~~~~~~Y~~~L~~li~~~~~~~~~~~~~v~~~~~D~~~~~~~l~~~~~~~  138 (198)
T PF01991_consen   59 ELEARRELLEAKQEIIDEVFEEVKEKLKSFSKDPDDYKKFLKKLIEEAAEKLGEGEVIVYVNKKDLELVKEILKRIKKEL  138 (198)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCC-THHHHHHHHHHHHHHCCTTSCEEEEECCHHHHCCHCCHCCCCCCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhcCCceEEecccchHHHHHHHHHHHHHHH
Confidence            36789999999999999999999999999999976899999999999999999889999999999999999887766677


Q ss_pred             HHhhCCCCCeEEecCccCCCCCCCCCCCCCCCccccEEEEecCCcEEEeccHHHHHHHHHHhchHHHHHHhc
Q 031468           83 AQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLV  154 (159)
Q Consensus        83 ~~~~~~~~~~v~vd~~~~L~~~~~~~~~~~~~~~GGviv~s~dg~i~vdnTle~RL~~~~~~~~p~I~~~LF  154 (159)
                      +...++..+.+..++ .++           .+|+|||+++++||+|+|||||++||+.+++.+.|+|++.||
T Consensus       139 ~~~~~~~~~~~~~~~-~~~-----------~~~~GG~il~~~dg~i~vd~T~e~~l~~~~~~~~~~i~~~LF  198 (198)
T PF01991_consen  139 KSKAGKDSVEVSVDS-DYL-----------IDIIGGFILESEDGKIRVDNTFESRLERLKEEIRPEIAKILF  198 (198)
T ss_dssp             CCCSSTTTEEEEE-T---------------BSSSSEEEEECSSSSCEEEEEHHHHHHHCHHHHHHHHHHHHC
T ss_pred             HHHhCCCcceeecCc-ccc-----------CCccceEEEEECCCCEEEECCHHHHHHHHHHHhHHHHHHHcC
Confidence            655444234455543 222           278999999999999999999999999999999999999999

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit E from the V1 and A1 complexes of V- and A-ATPases, respectively. Subunit E appears to form a tight interaction with subunit G in the F0 complex, which together may act as stators to prevent certain subunits from rotating with the central rotary element, much in the same way as the F0 complex subunit B does in F-ATPases []. In addition to its key role in stator structure, subunit E appears to have a role in mediating interactions with putative regulatory subunits []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3LG8_A 2KK7_A 4DT0_A 2DM9_A 2DMA_A 3V6I_A 3K5B_A 3J0J_L 2KZ9_A.

>PRK02292 V-type ATP synthase subunit E; Provisional

Probab=99.95  E-value=1e-26  Score=180.34  Aligned_cols=122  Identities=29%  Similarity=0.448  Sum_probs=107.6

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhhCCCcEEEEeccccHHHHHHHHHHHHHHH
Q 031468            3 LNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEY   82 (159)
Q Consensus         3 ~n~aR~~~L~ar~~~i~~v~~~a~~~L~~~~~~~~~Y~~~L~~Li~e~~~~l~~~~v~v~~~~~D~~~v~~~i~~~~~~~   82 (159)
                      .+.+|+.+|.+|+++++++|..|+++|.+++.+  .|..+|.+||.++    .+++++|+|+|.|..++++++.++    
T Consensus        67 ~~~~rr~~L~~r~~~l~~v~~~a~~kL~~~~~~--~y~~~l~~li~~~----~~~~~~i~~~~~D~~~~~~~~~~~----  136 (188)
T PRK02292         67 KLEAKRERLNARKEVLEDVRNQVEDEIASLDGD--KREELTKSLLDAA----DADGVRVYSRKDDEDLVKSLLSDY----  136 (188)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh--hHHHHHHHHHHhc----CCCCeEEEEccccHHHHHHHHHhc----
Confidence            478899999999999999999999999999986  7999999999998    467899999999999999987743    


Q ss_pred             HHhhCCCCCeEEecCccCCCCCCCCCCCCCCCccccEEEEecCCcEEEeccHHHHHHHHHHhchHHHHHHhcCC
Q 031468           83 AQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQ  156 (159)
Q Consensus        83 ~~~~~~~~~~v~vd~~~~L~~~~~~~~~~~~~~~GGviv~s~dg~i~vdnTle~RL~~~~~~~~p~I~~~LF~~  156 (159)
                      +      .+++  .      +.        .+|.|||||++++|+|+|||||++||+.+|++++|+|+++|||.
T Consensus       137 ~------~~~~--~------~~--------~~~~GGvil~~~~g~I~~dnT~~~rl~~~~~~~~~~i~~~LF~~  188 (188)
T PRK02292        137 D------GLEY--A------GN--------IDCLGGVVVESEDGRVRVNNTFDSILEDVWEDNLKEISDRLFGE  188 (188)
T ss_pred             c------cCee--C------CC--------CCCCceEEEEecCCceEEeccHHHHHHHHHHHhhHHHHHHhcCC
Confidence            1      1222  1      11        26899999999999999999999999999999999999999984

>PRK01194 V-type ATP synthase subunit E; Provisional

Probab=99.91  E-value=7.1e-24  Score=164.56  Aligned_cols=114  Identities=16%  Similarity=0.338  Sum_probs=99.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhhCCCcEEEEeccccHHHHHHHHHHHHHHHHH
Q 031468            5 ASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQ   84 (159)
Q Consensus         5 ~aR~~~L~ar~~~i~~v~~~a~~~L~~~~~~~~~Y~~~L~~Li~e~~~~l~~~~v~v~~~~~D~~~v~~~i~~~~~~~~~   84 (159)
                      ++|+++|++|+++++++|+.|+++|.++++++ .|+++|++||.+++..+ +++++|+|++.|..++++.          
T Consensus        69 e~R~~~L~aree~I~~v~~~a~e~L~~l~~~~-~Y~~~L~~LI~~a~~~l-~~~~~v~~~~~D~~~i~~~----------  136 (185)
T PRK01194         69 EARSIKREKRREILKDYLDIAYEHLMNITKSK-EYDSILNKMIEVAIKTL-GEDCIIKVSESDKKKINNA----------  136 (185)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcccCCc-hHHHHHHHHHHHHHHhc-CCCeEEEEcHHhHHHHHhC----------
Confidence            57999999999999999999999999999876 89999999999999985 5789999999999988752          


Q ss_pred             hhCCCCCeEEecCccCCCCCCCCCCCCCCCccccEEEEecCCcEEEeccHHHHHHHHHHhchHHHHHHhcCC
Q 031468           85 KLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQ  156 (159)
Q Consensus        85 ~~~~~~~~v~vd~~~~L~~~~~~~~~~~~~~~GGviv~s~dg~i~vdnTle~RL~~~~~~~~p~I~~~LF~~  156 (159)
                             ++++.     +          .+|.|||||+|.+|+|++||||++++    ++++|+||..||..
T Consensus       137 -------~l~~~-----~----------~~~~GGvil~s~dG~I~ld~~l~~~~----~~~~~~iR~~lf~~  182 (185)
T PRK01194        137 -------KIKFA-----D----------IDPYGGILAYSRDGKRELDLRLSSIF----ENILEDLKVYFYEN  182 (185)
T ss_pred             -------ceeeC-----C----------ccccccEEEEeCCCcEEehhhHHHHH----HHhHHHHHHHHHhh
Confidence                   22222     1          27999999999999999999988876    88899999999964

>COG1390 NtpE Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion]

Probab=99.89  E-value=4.6e-22  Score=155.30  Aligned_cols=127  Identities=31%  Similarity=0.528  Sum_probs=111.6

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhhCCCcEEEEeccccHHHHHHHHHHHHHHH
Q 031468            3 LNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEY   82 (159)
Q Consensus         3 ~n~aR~~~L~ar~~~i~~v~~~a~~~L~~~~~~~~~Y~~~L~~Li~e~~~~l~~~~v~v~~~~~D~~~v~~~i~~~~~~~   82 (159)
                      .+++|+++|++++++++.+|+.+.++|..++++| +|.. |..|+.+++..+.+++++|++++.|..++.+++.+.    
T Consensus        68 ~le~r~~~Le~~ee~l~~~~~~~~e~L~~i~~~~-~~~~-l~~ll~~~~~~~~~~~~iV~~~e~d~~~v~~~~~~~----  141 (194)
T COG1390          68 LLEARRKLLEAKEEILESVFEAVEEKLRNIASDP-EYES-LQELLIEALEKLLGGELVVYLNEKDKALVEQILREL----  141 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCCc-chHH-HHHHHHHHHHhcCCCCeEEEeCcccHHHHHHHHhhc----
Confidence            5789999999999999999999999999999998 6666 999999999999999999999999999988877641    


Q ss_pred             HHhhCCCCCeEEecCccCCCCCCCCCCCCCCCccccEEEEecCCcEEEeccHHHHHHHHHHhchHHHHHHhcCC
Q 031468           83 AQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQ  156 (159)
Q Consensus        83 ~~~~~~~~~~v~vd~~~~L~~~~~~~~~~~~~~~GGviv~s~dg~i~vdnTle~RL~~~~~~~~p~I~~~LF~~  156 (159)
                             .+...+.      +        +.+|.|||++++.||++++||||++||+..++.+.|.|++.||+.
T Consensus       142 -------~~~~~~~------~--------~~d~~GGvvv~~~dG~i~~dnt~~sil~~~~e~~~~~i~~~lf~~  194 (194)
T COG1390         142 -------KIGVELG------E--------GIDIIGGVVVESRDGKIRLDNTFESILERVLEELLPEISEKLFGV  194 (194)
T ss_pred             -------ccchhcc------c--------cCCCcceEEEEeCCCceeecCcHHHHHHHHHHHHHHHHHHHHcCC
Confidence                   1222222      1        137999999999999999999999999999999999999999984

>PRK01558 V-type ATP synthase subunit E; Provisional

Probab=99.70  E-value=1e-15  Score=120.00  Aligned_cols=126  Identities=21%  Similarity=0.269  Sum_probs=97.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhhCCCcEEEEeccccHHHHHHHHHHHHHHHH
Q 031468            4 NASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYA   83 (159)
Q Consensus         4 n~aR~~~L~ar~~~i~~v~~~a~~~L~~~~~~~~~Y~~~L~~Li~e~~~~l~~~~v~v~~~~~D~~~v~~~i~~~~~~~~   83 (159)
                      ...|..+|.+++++++.+.+.+.+.+.+.. +++.|..++..|+....   +++++.|+++++|...+.+.+..   .++
T Consensus        70 l~~r~~ll~~k~~i~~~~~~~~~~~~~~~~-~~e~~~~li~~ll~~~~---~~~~~~I~~~~~D~~~l~~~~~~---~~~  142 (198)
T PRK01558         70 QAGRDLLISFEKSIKSLFKAALKDEVAEVY-DSNFLRELIIRVVDSWV---KGDKLEIILNESDLSELESILRA---ALG  142 (198)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhc---CCCCeeEEECHHHHHHhHHHHHH---HHH
Confidence            356777888888888766555555556444 45589999999999864   45678999999999999877653   333


Q ss_pred             HhhCCCCCeEEecCccCCCCCCCCCCCCCCCccccEEEEecCCcEEEeccHHHHHHHHHHhchHHHHHHh
Q 031468           84 QKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQL  153 (159)
Q Consensus        84 ~~~~~~~~~v~vd~~~~L~~~~~~~~~~~~~~~GGviv~s~dg~i~vdnTle~RL~~~~~~~~p~I~~~L  153 (159)
                      ...+. +  +++..      .        ..|.|||+|.+.||++.+||||+++++..++.+.|.++++|
T Consensus       143 ~~l~~-g--i~i~~------~--------~~~~gG~iv~~~dg~i~id~T~ea~~~~l~~~L~~~~~~~l  195 (198)
T PRK01558        143 NKLKK-G--IELKP------F--------KGISKGFKIQQKDGSLYYDFSAEAIADILFSYLNPRFKEVI  195 (198)
T ss_pred             HHhcC-C--eEEcc------c--------CCcccceEEEEcCCCeEEeCcHHHHHHHHHHHhcHHHHHHH
Confidence            33321 2  44442      1        37999999999999999999999999999999999999987

>PRK01005 V-type ATP synthase subunit E; Provisional

Probab=99.53  E-value=2.6e-13  Score=107.09  Aligned_cols=123  Identities=12%  Similarity=0.141  Sum_probs=89.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccChhHHHHHHHHHHHHHHHhhCCC--------cEEEEeccccHHHHHHHH
Q 031468            5 ASRIKVLQAQDDLVSNMMEAASKEVLNV-SRDHNSYKKLLKGLIVQSLLRLKEP--------AVLLRCRKDDHHLVESVL   75 (159)
Q Consensus         5 ~aR~~~L~ar~~~i~~v~~~a~~~L~~~-~~~~~~Y~~~L~~Li~e~~~~l~~~--------~v~v~~~~~D~~~v~~~i   75 (159)
                      .+|..+|.+++++++.+|..+.+++.+- ..+|    +||.+||..-+......        -+...++|++..-.  +.
T Consensus        76 ~~R~~~l~aKqevi~~vf~~a~~~lv~~~~~d~----~~l~~lI~~~v~~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~  149 (207)
T PRK01005         76 AGKRSLESLKQAVENKIFRESLGEWLEHVLTDP----EVSAKLIQALVQAIEAQGISGNLTAYIGKHVSARAVNEL--LG  149 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH----HHHHHHHHHHHHHHhhcccccccchhhhhcCCHHHHHHH--HH
Confidence            4689999999999999999999998864 3344    66777777655555322        13345566555443  33


Q ss_pred             HHHHHHHHHhhCCCCCeEEecCccCCCCCCCCCCCCCCCccccEEEEecCCcEEEeccHHHHHHHHHHhchHHHHHHhcC
Q 031468           76 ESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVS  155 (159)
Q Consensus        76 ~~~~~~~~~~~~~~~~~v~vd~~~~L~~~~~~~~~~~~~~~GGviv~s~dg~i~vdnTle~RL~~~~~~~~p~I~~~LF~  155 (159)
                      ..+.+.+...    +  |++..                 ..|||+|.+.||++.+|||++++++.+|+.+.|.++.+|||
T Consensus       150 ~~~~~~l~~~----g--v~~~~-----------------~~gG~~v~~~dg~~~vd~t~d~i~~~~~~~l~~~~~~~LF~  206 (207)
T PRK01005        150 KEVTKKLKEK----G--VSVGS-----------------FVGGAQLKVEEKNWVLDLSSQTLLDLLTRYLQKDFREMIFQ  206 (207)
T ss_pred             HHHHHHHHHc----C--eEEec-----------------cCCceEEEecCCeeEEeCcHHHHHHHHHHHhhHHHHHHhcC
Confidence            3323333221    2  44441                 26999999999999999999999999999999999999998


Q ss_pred             C
Q 031468          156 Q  156 (159)
Q Consensus       156 ~  156 (159)
                      .
T Consensus       207 ~  207 (207)
T PRK01005        207 G  207 (207)
T ss_pred             C
Confidence            4

>TIGR03825 FliH_bacil flagellar assembly protein FliH

Probab=99.06  E-value=5.9e-09  Score=84.60  Aligned_cols=114  Identities=17%  Similarity=0.151  Sum_probs=83.5

Q ss_pred             HHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhhCCC-cEEEEeccccHHHHHHHHHHHHHHHHHhhCCCCCe
Q 031468           14 QDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEP-AVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPE   92 (159)
Q Consensus        14 r~~~i~~v~~~a~~~L~~~~~~~~~Y~~~L~~Li~e~~~~l~~~-~v~v~~~~~D~~~v~~~i~~~~~~~~~~~~~~~~~   92 (159)
                      +.++++=++.-|++=+......   -++.+..|+.+++..+... .++|+|+|.|.+.+......+...++..   ..+.
T Consensus       135 e~el~~La~~iAeKIi~~el~~---~~e~i~~lv~~al~~l~~~~~i~I~v~p~d~~~v~~~~~~l~~~~~~~---~~i~  208 (255)
T TIGR03825       135 QPLIIELACALAEKVIGVSLAE---DKNAFQALVRQVLSEVREFDEVSIYVHPHWYERVAAQKDELQSILPAC---EHLA  208 (255)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhccCCCcEEEEECHHHHHHHHHhHHHHHhhcCCC---CceE
Confidence            4455555555555555554321   2346788888998888764 7999999999999998877665555432   2466


Q ss_pred             EEecCccCCCCCCCCCCCCCCCccccEEEEecCCcEEEeccHHHHHHHHHHhchHHHH
Q 031468           93 IIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIR  150 (159)
Q Consensus        93 v~vd~~~~L~~~~~~~~~~~~~~~GGviv~s~dg~i~vdnTle~RL~~~~~~~~p~I~  150 (159)
                      |..|+  .             -..||++|.+.+|.  ||+|+++||+.+++.++..+.
T Consensus       209 i~~D~--~-------------l~~GgcvIEt~~G~--iDasldtqLe~l~~~l~~~l~  249 (255)
T TIGR03825       209 VYPDE--K-------------LPDGGCYVETNFGR--IDASVDTQLEQLKEKLLEALK  249 (255)
T ss_pred             EEeCC--C-------------CCCCCeEEEcCCce--EEeeHHHHHHHHHHHHHHHHh
Confidence            76663  1             45699999999998  799999999999998877664

This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.

>PRK06937 type III secretion system protein; Reviewed

Probab=99.00  E-value=1.2e-08  Score=80.21  Aligned_cols=112  Identities=14%  Similarity=0.226  Sum_probs=81.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhhCCC-cEEEEeccccHHHHHHHHHHHHHHHHHhhCCCC
Q 031468           12 QAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEP-AVLLRCRKDDHHLVESVLESAKEEYAQKLQVHP   90 (159)
Q Consensus        12 ~ar~~~i~~v~~~a~~~L~~~~~~~~~Y~~~L~~Li~e~~~~l~~~-~v~v~~~~~D~~~v~~~i~~~~~~~~~~~~~~~   90 (159)
                      ...+++++=++.-+++-+..+     .-++++..++.+++..+.+. .++|+++|.|.+.+++.+......+++.   +.
T Consensus        90 ~~e~~l~~Lvl~ia~kil~~~-----~~~e~i~~lv~~al~~l~~~~~v~I~V~P~D~~~v~~~~~~~~~~~~~~---~~  161 (204)
T PRK06937         90 GVEQQMSEVVLEAVRKILNDY-----DDVERTLQVVREALALVSNQKQVVVRVNPDQAAAVREQIAKVLKDFPEV---GY  161 (204)
T ss_pred             HHHHHHHHHHHHHHHHHHhcc-----CcHHHHHHHHHHHHHhcccCCeEEEEECHHHHHHHHHHHHHHHHhCCCC---cc
Confidence            345566665666555555543     23578889999999988764 7999999999999998877655544431   13


Q ss_pred             CeEEecCccCCCCCCCCCCCCCCCccccEEEEecCCcEEEeccHHHHHHHHHHhchHH
Q 031468           91 PEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPE  148 (159)
Q Consensus        91 ~~v~vd~~~~L~~~~~~~~~~~~~~~GGviv~s~dg~i~vdnTle~RL~~~~~~~~p~  148 (159)
                      +.|..|+  .             -..||+++++..|.  ||+|+++||+.+.+.+...
T Consensus       162 l~i~~D~--~-------------L~~Ggc~iET~~G~--vDasl~tql~~l~~al~~~  202 (204)
T PRK06937        162 LEVVADA--R-------------LDQGGCILETEVGI--IDASLDGQLEALEQAFHST  202 (204)
T ss_pred             EEEEeCC--C-------------CCCCCeEEecCCce--EEccHHHHHHHHHHHHHHH
Confidence            5676663  2             34699999999997  7999999998888776543

>PRK06669 fliH flagellar assembly protein H; Validated

Probab=98.94  E-value=3e-08  Score=81.38  Aligned_cols=112  Identities=19%  Similarity=0.304  Sum_probs=85.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhhCCC-cEEEEeccccHHHHHHHHHHHHHHHHHhhCCCCC
Q 031468           13 AQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEP-AVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPP   91 (159)
Q Consensus        13 ar~~~i~~v~~~a~~~L~~~~~~~~~Y~~~L~~Li~e~~~~l~~~-~v~v~~~~~D~~~v~~~i~~~~~~~~~~~~~~~~   91 (159)
                      ...++++-++.-|++-|.....   ..+.++..++.+++..+.+. .++|+++|.|.++++.....+...+...   .++
T Consensus       164 ~e~elv~Lal~iaekvi~~~~~---~~~~~i~~li~~al~~l~~~~~i~I~V~p~d~~~l~~~~~~l~~~l~~~---~~i  237 (281)
T PRK06669        164 SEEEIVELALDIAKKVIKEISE---NSKEIALALVKELLKEVKDATDITIRVNPEDYEYVKEQKDELISLLDNE---EHL  237 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhc---cCHHHHHHHHHHHHHHcCcCCcEEEEECHHHHHHHHHhHHHHHHhcCCC---CCe
Confidence            4556677777777766644444   36788899999999988764 7999999999999999888766555432   246


Q ss_pred             eEEecCccCCCCCCCCCCCCCCCccccEEEEecCCcEEEeccHHHHHHHHHHhchH
Q 031468           92 EIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLP  147 (159)
Q Consensus        92 ~v~vd~~~~L~~~~~~~~~~~~~~~GGviv~s~dg~i~vdnTle~RL~~~~~~~~p  147 (159)
                      .|..|+  .             -..||++|.+.+|.  ||+|+++||+.+++.++.
T Consensus       238 ~I~~D~--~-------------l~~GgcvIet~~G~--IDasi~tqLe~l~~~L~e  276 (281)
T PRK06669        238 KIYEDD--A-------------ISKGGCVIETDFGN--IDARIDTQLKQLKEKLLE  276 (281)
T ss_pred             EEEECC--C-------------CCCCCeEEEcCCCe--eeccHHHHHHHHHHHHHh
Confidence            777763  1             34599999999997  799999999998887654

>PRK06328 type III secretion system protein; Validated

Probab=98.90  E-value=6.2e-08  Score=77.35  Aligned_cols=113  Identities=16%  Similarity=0.194  Sum_probs=82.4

Q ss_pred             HHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhhCCC-cEEEEeccccHHHHHHHHHHHHHHHHHhhCCCCCe
Q 031468           14 QDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEP-AVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPE   92 (159)
Q Consensus        14 r~~~i~~v~~~a~~~L~~~~~~~~~Y~~~L~~Li~e~~~~l~~~-~v~v~~~~~D~~~v~~~i~~~~~~~~~~~~~~~~~   92 (159)
                      ++++++=++.-|++=+..-..   .-++.+..++.+++..+... .++|+|+|.|.+++++..+++...+.+.   ..|.
T Consensus        91 e~~lv~Lal~ia~kVi~~el~---~d~e~il~lV~~aL~~l~~~~~v~I~VnP~D~~~v~~~~~~l~~~~~~~---~~~~  164 (223)
T PRK06328         91 KEALVPLAIASVKKIIGKELE---LHPETIVSIIANSLKELTQHKRIIIHVNPKDLAIVEKSRPELKKIVEYA---DSLI  164 (223)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh---hCHHHHHHHHHHHHHhcccCCceEEEECHHHHHHHHHHHHHHHHhccCC---CceE
Confidence            445566666666666654322   12477779999999888654 7999999999999998877666555433   2577


Q ss_pred             EEecCccCCCCCCCCCCCCCCCccccEEEEecCCcEEEeccHHHHHHHHHHhchHHH
Q 031468           93 IIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEI  149 (159)
Q Consensus        93 v~vd~~~~L~~~~~~~~~~~~~~~GGviv~s~dg~i~vdnTle~RL~~~~~~~~p~I  149 (159)
                      |..|+  .|             -.||++|++..|.  ||.|+++||+.+.+.+.-.+
T Consensus       165 I~~D~--~L-------------~~GgCiIET~~G~--VDasle~ql~~l~~al~~~l  204 (223)
T PRK06328        165 ISPKA--DV-------------TPGGCIIETEAGI--INAQLDVQLAALEKAFSTIL  204 (223)
T ss_pred             EEeCC--CC-------------CCCCeEEEeCCce--EEecHHHHHHHHHHHHHHHH
Confidence            87774  22             3599999999997  69999999988877665444

>PRK13386 fliH flagellar assembly protein H; Provisional

Probab=98.76  E-value=1.4e-07  Score=75.94  Aligned_cols=104  Identities=11%  Similarity=0.177  Sum_probs=72.7

Q ss_pred             HHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhhCC--CcEEEEeccccHHHHHHHHHHHHHHHHHhhCCCCC
Q 031468           14 QDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKE--PAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPP   91 (159)
Q Consensus        14 r~~~i~~v~~~a~~~L~~~~~~~~~Y~~~L~~Li~e~~~~l~~--~~v~v~~~~~D~~~v~~~i~~~~~~~~~~~~~~~~   91 (159)
                      ++.+++-++.-|++-+..-..   .-++.+..++.+++..+..  ..++|+|+|.|.+++++...+.         ...|
T Consensus       121 ~~~ll~La~~iA~~vi~~el~---~~p~~il~~v~eaL~~lp~~~~~v~I~vnP~D~~~l~~~~~e~---------~~~~  188 (236)
T PRK13386        121 RDELLDLVEKVTRQVIRCELT---LQPQQILALVEETLAALPDDPEQLKVHLNPEEFGRLKDLAPEK---------VQAW  188 (236)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHhccccCCCeEEEECHHHHHHHHHhhhcc---------ccCe
Confidence            344555555555544444222   2345677999999999854  4799999999999999776531         1157


Q ss_pred             eEEecCccCCCCCCCCCCCCCCCccccEEEEecCCcEEEeccHHHHHHHHHHhch
Q 031468           92 EIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKL  146 (159)
Q Consensus        92 ~v~vd~~~~L~~~~~~~~~~~~~~~GGviv~s~dg~i~vdnTle~RL~~~~~~~~  146 (159)
                      ++..|+  .             -..||++|++..|.  ||.|+++||+.+.+.+.
T Consensus       189 ~l~~D~--~-------------l~~GgC~Iet~~g~--iDa~ietRl~~~~~~l~  226 (236)
T PRK13386        189 GLVADP--S-------------LSAGECRIVTDTSE--ADAGCEHRLDACMDAVK  226 (236)
T ss_pred             EEEeCC--C-------------cCCCCEEEEeCCce--EeeCHHHHHHHHHHHHH
Confidence            888774  2             34699999998887  69999999977655443

>PF02108 FliH: Flagellar assembly protein FliH; InterPro: IPR018035 This entry represents a region found in the flagellar assembly protein FliH, as well as in type III secretion system protein HrpE

Probab=98.73  E-value=3.7e-07  Score=65.68  Aligned_cols=101  Identities=22%  Similarity=0.316  Sum_probs=71.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHH-HhhCCC-cEEEEeccccHHHHHHHHHHHHHHHHHhhCCCC
Q 031468           13 AQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSL-LRLKEP-AVLLRCRKDDHHLVESVLESAKEEYAQKLQVHP   90 (159)
Q Consensus        13 ar~~~i~~v~~~a~~~L~~~~~~~~~Y~~~L~~Li~e~~-~~l~~~-~v~v~~~~~D~~~v~~~i~~~~~~~~~~~~~~~   90 (159)
                      .++++++-++.-|++-+.....   .-++.+..+|.+++ ...... .++|+++|.|.+.+++.+.+....+       +
T Consensus        25 ~~~~l~~l~~~iae~vi~~~l~---~~~~~i~~~i~~al~~~~~~~~~v~I~v~p~d~~~l~~~~~~~~~~~-------~   94 (128)
T PF02108_consen   25 LEQELVELALAIAEKVIGRELE---EDPEAILNLIREALQELPRDEEKVTIRVHPDDYEALEELLEDELPEL-------G   94 (128)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHhhccCCCeEEEECHHHHHHHHHHHHHHHhhc-------C
Confidence            3566666666666666653322   23467778888888 555444 7999999999999998877432211       4


Q ss_pred             CeEEecCccCCCCCCCCCCCCCCCccccEEEEecCCcEEEeccHHHHHHH
Q 031468           91 PEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDV  140 (159)
Q Consensus        91 ~~v~vd~~~~L~~~~~~~~~~~~~~~GGviv~s~dg~i~vdnTle~RL~~  140 (159)
                      +++..|+  .|             -.||+++++.+|.  +|.|+++||+.
T Consensus        95 ~~l~~D~--~l-------------~~G~c~iet~~g~--iD~~i~~ql~~  127 (128)
T PF02108_consen   95 WELVADP--SL-------------APGDCRIETEDGI--IDASIETQLEA  127 (128)
T ss_pred             CEEEecC--CC-------------CCCCEEEEECCee--EEeCHHHHHhc
Confidence            6777774  22             4599999998886  69999999964

Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export []. The sequence of fliH has been deduced and shown to encode a protein of molecular mass of 25,782 Da. Bacterial HrpE proteins are belived to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) [].

>PRK05687 fliH flagellar assembly protein H; Validated

Probab=98.63  E-value=7.8e-07  Score=71.69  Aligned_cols=107  Identities=24%  Similarity=0.308  Sum_probs=76.3

Q ss_pred             HHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhhC--CCcEEEEeccccHHHHHHHHHHHHHHHHHhhCCCCC
Q 031468           14 QDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLK--EPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPP   91 (159)
Q Consensus        14 r~~~i~~v~~~a~~~L~~~~~~~~~Y~~~L~~Li~e~~~~l~--~~~v~v~~~~~D~~~v~~~i~~~~~~~~~~~~~~~~   91 (159)
                      .+++++-++.-|++-+.....   .-++.+..+|.+++..+.  .+.++|+|+|.|.+++++.+..   .... .   ++
T Consensus       134 e~~Lv~Lal~ia~~vi~~el~---~~~~~il~~v~~al~~lp~~~~~v~i~v~P~D~~~v~~~~~~---~~~~-~---~~  203 (246)
T PRK05687        134 ESRLVQLALELARQVIGQELK---TDPSAILAAIRELLQALPMFSGKPQLRVNPDDLELVEQLLGA---ELSL-H---GW  203 (246)
T ss_pred             HHHHHHHHHHHHHHHHHhhhc---cCHHHHHHHHHHHHHhccccCCCceEEECHHHHHHHHHHHhh---HHHh-C---Ce
Confidence            344555555555555554222   234677789999998874  3579999999999999988763   2221 1   57


Q ss_pred             eEEecCccCCCCCCCCCCCCCCCccccEEEEecCCcEEEeccHHHHHHHHHHhchH
Q 031468           92 EIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLP  147 (159)
Q Consensus        92 ~v~vd~~~~L~~~~~~~~~~~~~~~GGviv~s~dg~i~vdnTle~RL~~~~~~~~p  147 (159)
                      +|..|+  .|             -.||++|++.+|.  ||.|+++||+.+.+.+.+
T Consensus       204 ~l~~D~--~l-------------~~Ggc~iet~~g~--vDa~l~~r~~~l~~~l~~  242 (246)
T PRK05687        204 RLLADP--SL-------------HRGGCRISAEEGD--VDASLETRWQEVCRLLAP  242 (246)
T ss_pred             EEEeCC--Cc-------------CCCCeEEEeCCCc--eeccHHHHHHHHHHHHhc
Confidence            888874  22             3599999999998  689999999998887754

>PRK09098 type III secretion system protein HrpB; Validated

Probab=98.62  E-value=1.6e-06  Score=69.67  Aligned_cols=110  Identities=21%  Similarity=0.236  Sum_probs=76.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhh--CCCcEEEEeccccHHHHHHHHHHHHHHHHHhhCCCC
Q 031468           13 AQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRL--KEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHP   90 (159)
Q Consensus        13 ar~~~i~~v~~~a~~~L~~~~~~~~~Y~~~L~~Li~e~~~~l--~~~~v~v~~~~~D~~~v~~~i~~~~~~~~~~~~~~~   90 (159)
                      .++++++=++..+++-+...  +    +..|-..+.+++..+  +.+.++|+|+|.|.+.++..+......++.   ...
T Consensus       111 ~e~~Lv~lv~~~v~kiv~~~--d----~~~ll~~v~~al~~~~~~~~~v~IrV~P~D~~~v~~~~~~~~~~~g~---~~~  181 (233)
T PRK09098        111 MRERLAEIVAAAVEQIVLGE--D----RAALFARAAQTLERVVDGASYLTVRVHPADLDAARAAFGAAAAAGGR---NVP  181 (233)
T ss_pred             HHHHHHHHHHHHHHHHHHhc--C----HHHHHHHHHHHHHHHhccCCcEEEEECHHHHHHHHHHHHHHHHhcCC---Ccc
Confidence            36677777777777666543  2    344556666777554  234799999999999999887765443221   113


Q ss_pred             CeEEecCccCCCCCCCCCCCCCCCccccEEEEecCCcEEEeccHHHHHHHHHHhchHH
Q 031468           91 PEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPE  148 (159)
Q Consensus        91 ~~v~vd~~~~L~~~~~~~~~~~~~~~GGviv~s~dg~i~vdnTle~RL~~~~~~~~p~  148 (159)
                      +.|..|+  .|             -.||+++++..|.  ||+|+++||+.+.+.+...
T Consensus       182 l~Iv~Dp--~L-------------~~GgCviET~~G~--IDasl~~ql~~L~~al~~~  222 (233)
T PRK09098        182 VEVVGDP--RL-------------APGACVCEWDFGV--FDASLDTQLRALRRALARA  222 (233)
T ss_pred             eEEEeCC--CC-------------CCCCeEEEeCCCe--EecCHHHHHHHHHHHHHHH
Confidence            5566663  33             3599999999997  6999999998887766543

>COG1317 FliH Flagellar biosynthesis/type III secretory pathway protein [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.61  E-value=1.4e-06  Score=70.04  Aligned_cols=112  Identities=21%  Similarity=0.263  Sum_probs=80.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhhCCC--cEEEEeccccHHHHHHHHHHHHHHHHHhhCCCC
Q 031468           13 AQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEP--AVLLRCRKDDHHLVESVLESAKEEYAQKLQVHP   90 (159)
Q Consensus        13 ar~~~i~~v~~~a~~~L~~~~~~~~~Y~~~L~~Li~e~~~~l~~~--~v~v~~~~~D~~~v~~~i~~~~~~~~~~~~~~~   90 (159)
                      ...++++-+++-|++=|.....   .-++.|..++.+++......  .++|+|+|.|.++++....+....+    ++. 
T Consensus       115 ~e~qLv~lvl~ia~~Vi~~~~~---~~~~~ll~~v~e~L~~~~~~~~~i~l~VnP~d~e~i~~~~~~~~~~~----~~~-  186 (234)
T COG1317         115 VEKQLVQLVLEIARKVIGKELE---LDPEALLAAVREALEEVPLFAAAITLRVNPDDLEIIRQQLDEELSLL----GWR-  186 (234)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHh---cCHHHHHHHHHHHHHhccccccCeEEEECHHHHHHHHHHHHHHHhhc----chh-
Confidence            3555666666666666665544   35678889999998877544  6999999999999998887543322    221 


Q ss_pred             CeEEecCccCCCCCCCCCCCCCCCccccEEEEecCCcEEEeccHHHHHHHHHHhchHHH
Q 031468           91 PEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEI  149 (159)
Q Consensus        91 ~~v~vd~~~~L~~~~~~~~~~~~~~~GGviv~s~dg~i~vdnTle~RL~~~~~~~~p~I  149 (159)
                      +.|..|+  .             --.||+++++..|.  ||-|+++||..+.+.+.+..
T Consensus       187 l~l~~D~--~-------------l~~GgC~IeTe~G~--iDasld~ql~~L~~~~~~~~  228 (234)
T COG1317         187 LELVADP--A-------------LSPGGCIIETEFGI--IDASLDTQLAALKRALLESL  228 (234)
T ss_pred             eeeccCC--C-------------CCCCCeEEEecCcc--ccccHHHHHHHHHHHHHhhh
Confidence            2244442  1             34699999999997  69999999999988887754

>PRK06032 fliH flagellar assembly protein H; Validated

Probab=98.28  E-value=2.1e-05  Score=61.65  Aligned_cols=109  Identities=12%  Similarity=0.066  Sum_probs=71.4

Q ss_pred             HHHHHHHHHHHHHHHHHhh-ccChhHHHHHHHHHHHHHHHhhCCC-cEEEEeccccHHHHHHHHHHHHHHHHHhhCCCCC
Q 031468           14 QDDLVSNMMEAASKEVLNV-SRDHNSYKKLLKGLIVQSLLRLKEP-AVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPP   91 (159)
Q Consensus        14 r~~~i~~v~~~a~~~L~~~-~~~~~~Y~~~L~~Li~e~~~~l~~~-~v~v~~~~~D~~~v~~~i~~~~~~~~~~~~~~~~   91 (159)
                      ++++++=++.-|++-+... ..+|   ...+..++.+++..+.+. .++|+++|.|.+.+++.+.+........   ..+
T Consensus        86 ~~~lv~La~~iarkvi~~~l~~~p---~a~v~~~v~eal~~l~~~~~v~I~v~P~d~~~l~~~l~~~~~~~~~~---~~~  159 (199)
T PRK06032         86 ETEAADLALAVARKIAGAALAAEP---LAEITAAVRDCLRHLVATPHLVVRVNDALVEAARERLERLARESGFE---GRL  159 (199)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCc---hhHHHHHHHHHHHHhcCCCcEEEEECHHHHHHHHHHHHHHHHhcCcC---ccE
Confidence            3444444444455444443 3332   224667777777766554 6999999999999999888655443321   135


Q ss_pred             eEEecCccCCCCCCCCCCCCCCCccccEEEEecCCcEEEeccHHHHHHHHHHhc
Q 031468           92 EIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKK  145 (159)
Q Consensus        92 ~v~vd~~~~L~~~~~~~~~~~~~~~GGviv~s~dg~i~vdnTle~RL~~~~~~~  145 (159)
                      .|..|+  .|             -.||++|+..+|+  +|+|+++++.++.+.+
T Consensus       160 ~l~~D~--~L-------------~~G~c~vet~~G~--vd~d~~~~~~~I~~al  196 (199)
T PRK06032        160 VVLADP--DM-------------APGDCRLEWADGG--VVRDRAAIEARIEEAV  196 (199)
T ss_pred             EEeeCC--CC-------------CCCCeEEEeCCCe--EecCHHHHHHHHHHHh
Confidence            666663  33             3599999999998  5888888887776543

>TIGR02499 HrpE_YscL_not type III secretion apparatus protein, HrpE/YscL family

Probab=98.20  E-value=2e-05  Score=59.33  Aligned_cols=70  Identities=20%  Similarity=0.192  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHHHHHHhhCCC-cEEEEeccccHHHHHHHHHHHHHHHHHhhCCCCCeEEecCccCCCCCCCCCCCCCCCcc
Q 031468           38 SYKKLLKGLIVQSLLRLKEP-AVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCS  116 (159)
Q Consensus        38 ~Y~~~L~~Li~e~~~~l~~~-~v~v~~~~~D~~~v~~~i~~~~~~~~~~~~~~~~~v~vd~~~~L~~~~~~~~~~~~~~~  116 (159)
                      ..++++..++.+++..+.+. .++|+|+|.|.+.+++.+.+...    ..   ++++..|+  .             -..
T Consensus        94 ~~~e~l~~lv~~al~~~~~~~~v~I~v~P~d~~~l~~~l~~~~~----~~---~~~i~~D~--~-------------l~~  151 (166)
T TIGR02499        94 DEPERLVRLLRQLLRAVANQGRLTLRVHPEQLDEVREALAERLA----LE---PWELEPDA--S-------------LAP  151 (166)
T ss_pred             CCHHHHHHHHHHHHHhCCCCCceEEEECHHHHHHHHHHHHHHhc----cC---CeEEeeCC--C-------------CCC
Confidence            45678888888888888764 79999999999999988775321    11   24555553  1             457


Q ss_pred             ccEEEEecCCcEE
Q 031468          117 GGVVVASRDGKIV  129 (159)
Q Consensus       117 GGviv~s~dg~i~  129 (159)
                      ||++|++.+|.|.
T Consensus       152 G~c~vet~~G~vd  164 (166)
T TIGR02499       152 GACVLETESGVVD  164 (166)
T ss_pred             CCEEEEeCCceee
Confidence            9999999999864

This model is related to Pfam model pfam06188, but is broader. pfam06188 describes HrpE-like proteins, components of bacterial type III secretion systems primarily in bacteria that infect plants. This model includes also the homologous proteins of animal pathogens, such as YscL of Yersinia pestis. This model excludes the related protein FliH of the bacterial flagellar apparatus (see pfam02108)

>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B

Probab=97.67  E-value=0.0027  Score=51.31  Aligned_cols=109  Identities=13%  Similarity=0.174  Sum_probs=66.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhh--------------CCCcEEEE-eccccHHHHHHHHHHH
Q 031468           14 QDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRL--------------KEPAVLLR-CRKDDHHLVESVLESA   78 (159)
Q Consensus        14 r~~~i~~v~~~a~~~L~~~~~~~~~Y~~~L~~Li~e~~~~l--------------~~~~v~v~-~~~~D~~~v~~~i~~~   78 (159)
                      |.++.+-.+..|.+-|....... ....++...|.+- ..+              .+..++|. ..|=+.+....+...+
T Consensus       122 ~~ei~~la~~~A~kil~~~~d~~-~~~~lid~~i~~l-~~l~~~~~~~l~~~~~~~~~~~~v~sa~~l~~~~~~~i~~~l  199 (246)
T TIGR03321       122 RRRTGAEVFAIARKVLTDLADTD-LEERMVDVFVQRL-RTLDPDEKAALAEALADSGNPVLVRSAFELPEEQREQIRDTI  199 (246)
T ss_pred             HHHHHHHHHHHHHHHHHHhcChH-HHHHHHHHHHHHh-hcCCHHHHHHHHHHHhCCCCceEEEecCCCCHHHHHHHHHHH
Confidence            55555666777777777655443 5666776666431 111              11124433 4444455555554444


Q ss_pred             HHHHHHhhCCCCCeEEecCccCCCCCCCCCCCCCCCccccEEEEecCCcEEEeccHHHHHHHHHHhc
Q 031468           79 KEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKK  145 (159)
Q Consensus        79 ~~~~~~~~~~~~~~v~vd~~~~L~~~~~~~~~~~~~~~GGviv~s~dg~i~vdnTle~RL~~~~~~~  145 (159)
                      .+.|+.   ...+++.+|                ++++|||++..  |..++|.|+.++|+.+...+
T Consensus       200 ~~~~~~---~v~~~~~vd----------------p~ligGi~l~~--g~~~id~Si~~~L~~l~~~~  245 (246)
T TIGR03321       200 RETLGP---EIRLRFQTE----------------PDLIGGIELTA--GGHKLAWSVDDYLESLEEDV  245 (246)
T ss_pred             HHHHCC---CeeEEeeeC----------------chhcCceEEEE--CCEEEechHHHHHHHHHhhc
Confidence            444421   113445555                27999999998  88999999999998877653

CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.

>PRK13436 F0F1 ATP synthase subunit delta; Provisional

Probab=97.58  E-value=0.0016  Score=50.14  Aligned_cols=64  Identities=14%  Similarity=0.199  Sum_probs=43.4

Q ss_pred             EeccccHHHHHHHHHHHHHHHHHhhCCCCCeEEecCccCCCCCCCCCCCCCCCccccEEEEecCCcEEEeccHHHHHHHH
Q 031468           62 RCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVV  141 (159)
Q Consensus        62 ~~~~~D~~~v~~~i~~~~~~~~~~~~~~~~~v~vd~~~~L~~~~~~~~~~~~~~~GGviv~s~dg~i~vdnTle~RL~~~  141 (159)
                      ...|=+.+..+.+...+.+.|....   .++..||                ++++||+++.-  |.-++|.|+.+||+.+
T Consensus       115 sA~~Ls~~~~~~i~~~l~~~~g~~v---~l~~~vD----------------pslIGGi~i~~--gd~viD~Sik~~L~~l  173 (179)
T PRK13436        115 TTEPLSEVQISRFESKLSKKLNKKV---HLVNKID----------------PKLIAGIKIKV--DNKVFENSIKSKLKEL  173 (179)
T ss_pred             ecCCCCHHHHHHHHHHHHHHHCCeE---EEEeecC----------------HHHcCceEEEE--CCEEeehhHHHHHHHH
Confidence            3556666666666665555443110   1233334                38999999998  8889999999999988


Q ss_pred             HHhch
Q 031468          142 FRKKL  146 (159)
Q Consensus       142 ~~~~~  146 (159)
                      ...+.
T Consensus       174 ~~~l~  178 (179)
T PRK13436        174 KKQVL  178 (179)
T ss_pred             HHHHh
Confidence            87654

>PRK13430 F0F1 ATP synthase subunit delta; Provisional

Probab=97.42  E-value=0.004  Score=51.11  Aligned_cols=87  Identities=20%  Similarity=0.190  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHHHHHHhhCCCcEE-EEeccccHHHHHHHHHHHHHHHHHhhCCCCCeEEecCccCCCCCCCCCCCCCCCcc
Q 031468           38 SYKKLLKGLIVQSLLRLKEPAVL-LRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCS  116 (159)
Q Consensus        38 ~Y~~~L~~Li~e~~~~l~~~~v~-v~~~~~D~~~v~~~i~~~~~~~~~~~~~~~~~v~vd~~~~L~~~~~~~~~~~~~~~  116 (159)
                      .+..++..+.......-+.-.++ ....|=+.+..+.+...+.+.|...   -.++..||                ++++
T Consensus       182 ~l~~i~~~f~~l~~~~~~~~~a~VtSA~pLs~~q~~~L~~~L~k~~g~~---V~l~~~VD----------------psLI  242 (271)
T PRK13430        182 SIEEGLDELSNLAAARRGRSVATVTTAVPLSDEQKQRLAAALSRIYGRP---VHLNSEVD----------------PSVL  242 (271)
T ss_pred             hHHHHHHHHHHHHHHHcCeeEEEEEecCCCCHHHHHHHHHHHHHHHCCc---eEEEeeEC----------------cccc
Confidence            34455555555444433322232 3344555555555555555555321   13555555                3899


Q ss_pred             ccEEEEecCCcEEEeccHHHHHHHHHHhc
Q 031468          117 GGVVVASRDGKIVCENTLDARLDVVFRKK  145 (159)
Q Consensus       117 GGviv~s~dg~i~vdnTle~RL~~~~~~~  145 (159)
                      ||++|.-  |.-++|+|+.+||+.+...+
T Consensus       243 GGivI~v--Gd~viD~Sv~~rL~~L~~~L  269 (271)
T PRK13430        243 GGMRVQV--GDEVIDGSVAGRLERLRRRL  269 (271)
T ss_pred             CcEEEEE--CCEEEehhHHHHHHHHHHHh
Confidence            9999998  88899999999999888765

>PF06188 HrpE: HrpE/YscL/FliH and V-type ATPase subunit E; InterPro: IPR009335 This family consists of several bacterial HrpE proteins, which are believed to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) []

Probab=97.31  E-value=0.0066  Score=47.41  Aligned_cols=100  Identities=19%  Similarity=0.317  Sum_probs=72.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhhCCCcEEEEeccccHHHHHHHHHHHHHHHHHh
Q 031468            6 SRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQK   85 (159)
Q Consensus         6 aR~~~L~ar~~~i~~v~~~a~~~L~~~~~~~~~Y~~~L~~Li~e~~~~l~~~~v~v~~~~~D~~~v~~~i~~~~~~~~~~   85 (159)
                      .|..+...-.+....++..+.++|..-..++..+..+++.|+.+.   .++..++++|.|.+.+.|...+.+.    .. 
T Consensus        83 ~~e~l~~~l~~~~~~ll~~al~~lL~e~~~~qrv~aLlr~l~~~~---~~~~~~tL~~hP~~~~~V~~~L~~~----~~-  154 (191)
T PF06188_consen   83 QREQLLQQLEEQAEELLSQALERLLDETPDQQRVAALLRQLLASQ---RQESEATLRCHPDQLEEVAAWLAEH----PA-  154 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhc---ccccceEEEECHHHHHHHHHHHHhC----CC-
Confidence            445555556666777778777777765555558888888887653   3456899999999999999888742    21 


Q ss_pred             hCCCCCeEEecCccCCCCCCCCCCCCCCCccccEEEEecCCcEEEe
Q 031468           86 LQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCE  131 (159)
Q Consensus        86 ~~~~~~~v~vd~~~~L~~~~~~~~~~~~~~~GGviv~s~dg~i~vd  131 (159)
                         ..|++..|.  .|+             .|..++++..|.+.+|
T Consensus       155 ---~~w~l~~D~--sl~-------------~~~l~L~t~~G~~~l~  182 (191)
T PF06188_consen  155 ---LHWQLQADE--SLA-------------PDQLKLETANGEFRLD  182 (191)
T ss_pred             ---cceeeccCC--CCC-------------CCceEEEcCCCcEEEC
Confidence               147777774  443             4889999999998776

This family also includes V-type proton ATPase subunit E proteins. This subunit appears to form a tight interaction with subunit G in the F0 complex. Subunits E and G may act together as stators to prevent certain subunits from rotating with the central rotary element []. PF01991 from PFAM also contains V-type ATPase subunit E proteins. There is an evolutionary link between type III secretion systems and membrane-associated proton translocating ATPases [].

>PRK13434 F0F1 ATP synthase subunit delta; Provisional

Probab=97.24  E-value=0.009  Score=46.15  Aligned_cols=31  Identities=23%  Similarity=0.358  Sum_probs=28.3

Q ss_pred             CccccEEEEecCCcEEEeccHHHHHHHHHHhch
Q 031468          114 SCSGGVVVASRDGKIVCENTLDARLDVVFRKKL  146 (159)
Q Consensus       114 ~~~GGviv~s~dg~i~vdnTle~RL~~~~~~~~  146 (159)
                      +++||+++.-  |..++|.|+.+||+++...+.
T Consensus       144 sLIGG~ii~i--gd~viD~Svk~~L~~l~~~l~  174 (184)
T PRK13434        144 NLLGGFVVQF--NDLKIEKSIASQLGEIKKAML  174 (184)
T ss_pred             HHcCceEEEE--CCEEEeHhHHHHHHHHHHHHH
Confidence            8999999998  888999999999999888774

>PF06635 NolV: Nodulation protein NolV; InterPro: IPR010586 This family consists of several nodulation protein NolV sequences from different Rhizobium species []

Probab=97.22  E-value=0.013  Score=46.29  Aligned_cols=109  Identities=22%  Similarity=0.250  Sum_probs=79.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhhCCC-cEEEEeccccHHHHHHHHHHHHHHHHHhhCCCCC
Q 031468           13 AQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEP-AVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPP   91 (159)
Q Consensus        13 ar~~~i~~v~~~a~~~L~~~~~~~~~Y~~~L~~Li~e~~~~l~~~-~v~v~~~~~D~~~v~~~i~~~~~~~~~~~~~~~~   91 (159)
                      -.+++.+=+++-+++-|..|..     .++|.+.+.+++..+..+ .++|++.|.|.+.+...+..+. .+   .|...+
T Consensus        91 LE~~l~~LVl~~Vr~ILg~fd~-----~ell~r~vr~Al~~~~~~~~v~l~V~P~~vd~l~~~la~~~-~~---~g~~~i  161 (207)
T PF06635_consen   91 LEQELAELVLEIVRKILGEFDP-----DELLVRAVRQALSQIRQGAEVTLRVAPADVDMLRRELAALE-GR---PGRPKI  161 (207)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCh-----HHHHHHHHHHHHHHHhcCCeEEEEECHHHHHHHHHHHHhhh-cc---CCCCce
Confidence            3466666677777777776744     467888888888888766 7999999999999998887552 22   222235


Q ss_pred             eEEecCccCCCCCCCCCCCCCCCccccEEEEecCCcEEEeccHHHHHHHHHHhchH
Q 031468           92 EIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLP  147 (159)
Q Consensus        92 ~v~vd~~~~L~~~~~~~~~~~~~~~GGviv~s~dg~i~vdnTle~RL~~~~~~~~p  147 (159)
                      .|..|+  -|             -.|.+++.|.-|.  ||-+|++-|+.++..+.|
T Consensus       162 ~I~aDp--~L-------------a~~~Cvlese~G~--VdagL~aQL~ALr~a~~~  200 (207)
T PF06635_consen  162 RIVADP--RL-------------AAGQCVLESEFGV--VDAGLDAQLRALRLAFGP  200 (207)
T ss_pred             eeecCC--CC-------------CCCCeeeecccch--hhccHHHHHHHHHHHhcc
Confidence            555553  34             3488999999998  689999999888877665

The function of this family is unclear.; GO: 0009877 nodulation

>PRK13428 F0F1 ATP synthase subunit delta; Provisional

Probab=97.20  E-value=0.0076  Score=52.80  Aligned_cols=86  Identities=19%  Similarity=0.212  Sum_probs=53.1

Q ss_pred             HHHHHHHHHHHHHHhhCCCcE-EEEeccccHHHHHHHHHHHHHHHHHhhCCCCCeEEecCccCCCCCCCCCCCCCCCccc
Q 031468           39 YKKLLKGLIVQSLLRLKEPAV-LLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSG  117 (159)
Q Consensus        39 Y~~~L~~Li~e~~~~l~~~~v-~v~~~~~D~~~v~~~i~~~~~~~~~~~~~~~~~v~vd~~~~L~~~~~~~~~~~~~~~G  117 (159)
                      ..+++.....-....-+.-.+ +....|=+.+..+.+...+.+.|+...   .+++.||                ++++|
T Consensus       357 l~~i~~~~~~l~~~~~g~~~a~VtsA~pLs~~q~~~L~~~L~k~~g~~V---~l~~~VD----------------psLiG  417 (445)
T PRK13428        357 AEEAVLFLAELAVARRGEVVAQVSAAAELSDAQRTRLTEVLSRIYGRPV---SVQLHID----------------PELLG  417 (445)
T ss_pred             HHHHHHHHHHHHHHHCCeeEEEEEeecCCCHHHHHHHHHHHHHHHCCce---EEEeeeC----------------chhhC
Confidence            344444444433333222222 334556666666666665555554211   2444555                38999


Q ss_pred             cEEEEecCCcEEEeccHHHHHHHHHHhc
Q 031468          118 GVVVASRDGKIVCENTLDARLDVVFRKK  145 (159)
Q Consensus       118 Gviv~s~dg~i~vdnTle~RL~~~~~~~  145 (159)
                      |++|.-  |..++|.|+.+||+.+..++
T Consensus       418 GivI~v--Gd~viD~Sv~~rL~~l~~~l  443 (445)
T PRK13428        418 GLSIAV--GDEVIDGTLSSRLAAAEAQL  443 (445)
T ss_pred             ceEEEE--CCEEeehhHHHHHHHHHhhC
Confidence            999998  88999999999999887664

>PRK13441 F0F1 ATP synthase subunit delta; Provisional

Probab=96.57  E-value=0.06  Score=41.32  Aligned_cols=31  Identities=29%  Similarity=0.274  Sum_probs=27.8

Q ss_pred             CccccEEEEecCCcEEEeccHHHHHHHHHHhch
Q 031468          114 SCSGGVVVASRDGKIVCENTLDARLDVVFRKKL  146 (159)
Q Consensus       114 ~~~GGviv~s~dg~i~vdnTle~RL~~~~~~~~  146 (159)
                      +++||+++.-  |.-++|.|+.++|+.+...++
T Consensus       147 sliGG~~i~i--g~~~~D~Sik~~L~~l~~~l~  177 (180)
T PRK13441        147 SLIAGAVVEF--EGKRLDVTVQGRLKKIAREVL  177 (180)
T ss_pred             HHhCcEEEEE--CCEEEeHhHHHHHHHHHHHHh
Confidence            7899999998  778899999999999888774

>COG0712 AtpH F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) [Energy production and conversion]

Probab=96.55  E-value=0.054  Score=41.87  Aligned_cols=30  Identities=20%  Similarity=0.411  Sum_probs=26.7

Q ss_pred             CccccEEEEecCCcEEEeccHHHHHHHHHHhc
Q 031468          114 SCSGGVVVASRDGKIVCENTLDARLDVVFRKK  145 (159)
Q Consensus       114 ~~~GGviv~s~dg~i~vdnTle~RL~~~~~~~  145 (159)
                      +++||+++..  |.-++|.|+.++|+++...+
T Consensus       148 sliGG~iI~v--gd~viD~Svr~~L~~l~~~l  177 (178)
T COG0712         148 SLIGGLIIKV--GDEVIDGSVRGKLKRLAKAL  177 (178)
T ss_pred             HHhCceEEEE--CCEEEechHHHHHHHHHHhc
Confidence            8999999998  88999999999998876654

>PRK05758 F0F1 ATP synthase subunit delta; Validated

Probab=96.14  E-value=0.18  Score=38.38  Aligned_cols=30  Identities=23%  Similarity=0.412  Sum_probs=26.4

Q ss_pred             CccccEEEEecCCcEEEeccHHHHHHHHHHhc
Q 031468          114 SCSGGVVVASRDGKIVCENTLDARLDVVFRKK  145 (159)
Q Consensus       114 ~~~GGviv~s~dg~i~vdnTle~RL~~~~~~~  145 (159)
                      +.+||+++.-  |...+|.|+.++|+...+.+
T Consensus       146 ~ligG~~i~~--~~~~~d~Si~~~L~~l~~~l  175 (177)
T PRK05758        146 SLIGGVIIKV--GDRVIDGSVRGKLERLKDAL  175 (177)
T ss_pred             HHhCceEEEE--CCEEeehhHHHHHHHHHHHh
Confidence            7899999998  67889999999998887765

>TIGR01145 ATP_synt_delta ATP synthase, F1 delta subunit

Probab=95.96  E-value=0.22  Score=37.78  Aligned_cols=29  Identities=24%  Similarity=0.465  Sum_probs=25.3

Q ss_pred             CccccEEEEecCCcEEEeccHHHHHHHHHHh
Q 031468          114 SCSGGVVVASRDGKIVCENTLDARLDVVFRK  144 (159)
Q Consensus       114 ~~~GGviv~s~dg~i~vdnTle~RL~~~~~~  144 (159)
                      +.+||+++..  |...+|.|+.++|+.+...
T Consensus       143 ~ligGi~i~~--~~~~iD~Si~~~L~~l~~~  171 (172)
T TIGR01145       143 DLIGGVIIRI--GDRVIDGSVRGQLKRLSRQ  171 (172)
T ss_pred             HHhCceEEEE--CCEEEehhHHHHHHHHHhh
Confidence            7899999998  7788999999999887654

This model describes the ATP synthase delta subunit in bacteria, mitochondria, and chloroplasts. It is sometimes called OSCP for Oligomycin Sensitivity Conferring Protein. F1/F0-ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and organelles of higher eukaryotes, namely, mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. Delta subunit belongs to the F1 cluster or sector and functionally implicated in the overall stability of the complex. Expression of truncated forms of this subunit results in low ATPase activity.

>PRK13429 F0F1 ATP synthase subunit delta; Provisional

Probab=95.66  E-value=0.35  Score=36.90  Aligned_cols=30  Identities=30%  Similarity=0.369  Sum_probs=26.4

Q ss_pred             CccccEEEEecCCcEEEeccHHHHHHHHHHhc
Q 031468          114 SCSGGVVVASRDGKIVCENTLDARLDVVFRKK  145 (159)
Q Consensus       114 ~~~GGviv~s~dg~i~vdnTle~RL~~~~~~~  145 (159)
                      +.+||+++.-  |.-.+|.|+.++|+.+.+.+
T Consensus       148 sligG~~i~~--~~~~iD~Si~~~L~~l~~~l  177 (181)
T PRK13429        148 SLIGGVVVKI--GDKVLDASVRTQLRRLKETL  177 (181)
T ss_pred             hhhCceEEEE--CCEEEehhHHHHHHHHHHHH
Confidence            7899999998  66889999999998887765

>CHL00119 atpD ATP synthase CF1 delta subunit; Validated

Probab=94.30  E-value=0.79  Score=35.22  Aligned_cols=31  Identities=19%  Similarity=0.309  Sum_probs=26.4

Q ss_pred             CccccEEEEecCCcEEEeccHHHHHHHHHHhch
Q 031468          114 SCSGGVVVASRDGKIVCENTLDARLDVVFRKKL  146 (159)
Q Consensus       114 ~~~GGviv~s~dg~i~vdnTle~RL~~~~~~~~  146 (159)
                      +.+||+++.-  |..++|.|+.++|+.....+.
T Consensus       150 ~ligGi~i~~--g~~~~D~Si~~~L~~l~~~l~  180 (184)
T CHL00119        150 SLIGGFLIKI--GSKVIDTSIKGQLKQLASHLD  180 (184)
T ss_pred             HHhCcEEEEE--CCEEEeHhHHHHHHHHHHHHH
Confidence            7899999998  778899999999987776553

>PRK08474 F0F1 ATP synthase subunit delta; Validated

Probab=92.68  E-value=3  Score=31.80  Aligned_cols=32  Identities=19%  Similarity=0.132  Sum_probs=23.9

Q ss_pred             cccEEEEecCCcEEEeccHHHHHHHHHHhchHHHHH
Q 031468          116 SGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRK  151 (159)
Q Consensus       116 ~GGviv~s~dg~i~vdnTle~RL~~~~~~~~p~I~~  151 (159)
                      +||+++..  |..++|.|  ..|+.+..++..-|-+
T Consensus       143 IGG~ii~i--gd~v~D~s--~~l~~~~~~~~~~~~~  174 (176)
T PRK08474        143 YDGIKVEV--DDLGVEVS--FSKDRLKNQLIEYILK  174 (176)
T ss_pred             CCCEEEEE--CCEEEEee--eeHHHHHHHHHHHHHh
Confidence            89999998  88889984  5677776666555443

>PF00213 OSCP: ATP synthase delta (OSCP) subunit; InterPro: IPR000711 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=91.16  E-value=0.017  Score=43.67  Aligned_cols=80  Identities=20%  Similarity=0.292  Sum_probs=32.6

Q ss_pred             EEeccccHHHHHHHHHHHHHHHHHhhCCCCCeEEecCccCCCCCCCC-----------------CCCCCCCccccEEEEe
Q 031468           61 LRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGH-----------------HNAHGPSCSGGVVVAS  123 (159)
Q Consensus        61 v~~~~~D~~~v~~~i~~~~~~~~~~~~~~~~~v~vd~~~~L~~~~~~-----------------~~~~~~~~~GGviv~s  123 (159)
                      +.+...-..++.+++.++...+....+.  ..++|-...+|.++...                 ....|++++||+++.-
T Consensus        75 ~l~~~~r~~~l~~i~~~~~~~~~~~~~~--~~~~V~sA~~l~~~q~~~l~~~l~~~~~~~~v~~~~~vD~sLigG~~i~~  152 (172)
T PF00213_consen   75 LLIDNNRLSLLPEILEEFEELVNEHNGI--VEATVTSAFPLSEEQKKKLEKKLKKKYGKKKVELNYKVDPSLIGGFIIEV  152 (172)
T ss_dssp             HHCCTT-CCCHHHHHHHHHHHHHHHCCT--S-B-SSS-B----SSSTTTTTTCCCTTTT---------------------
T ss_pred             HHHhcCCcccHHHHHHHHHHHHHHHcCe--EEEEEEEecCCCHHHHHHHHHHHHHHHCCCeeeEEEEEccccCcEEEEEE
Confidence            4455556667777777777766665553  33334333444444221                 1224578999999998


Q ss_pred             cCCcEEEeccHHHHHHHHHHh
Q 031468          124 RDGKIVCENTLDARLDVVFRK  144 (159)
Q Consensus       124 ~dg~i~vdnTle~RL~~~~~~  144 (159)
                        |..++|.|+.+||+.+..+
T Consensus       153 --~~~~iD~Sv~~~L~~l~~~  171 (172)
T PF00213_consen  153 --GDKVIDASVKSRLEQLKKE  171 (172)
T ss_dssp             ------TTTTTTTTTTTT-TT
T ss_pred             --CCEEEehhHHHHHHHHHhc
Confidence              8888999999999776654

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This family represents subunits called delta in bacterial and chloroplast ATPase, or OSCP (oligomycin sensitivity conferral protein) in mitochondrial ATPase (note that in mitochondria there is a different delta subunit, IPR001469 from INTERPRO). The OSCP/delta subunit appears to be part of the peripheral stalk that holds the F1 complex alpha3beta3 catalytic core stationary against the torque of the rotating central stalk, and links subunit A of the F0 complex with the F1 complex. In mitochondria, the peripheral stalk consists of OSCP, as well as F0 components F6, B and D. In bacteria and chloroplasts the peripheral stalks have different subunit compositions: delta and two copies of F0 component B (bacteria), or delta and F0 components B and B' (chloroplasts) [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0015986 ATP synthesis coupled proton transport; PDB: 2A7U_B 1ABV_A 2WSS_S 2BO5_A 2JMX_A.

>KOG1662 consensus Mitochondrial F1F0-ATP synthase, subunit OSCP/ATP5 [Energy production and conversion]

Probab=89.70  E-value=1  Score=35.52  Aligned_cols=29  Identities=28%  Similarity=0.526  Sum_probs=25.1

Q ss_pred             CCccccEEEEecCCcEEEeccHHHHHHHHHH
Q 031468          113 PSCSGGVVVASRDGKIVCENTLDARLDVVFR  143 (159)
Q Consensus       113 ~~~~GGviv~s~dg~i~vdnTle~RL~~~~~  143 (159)
                      ++++||+||+.  |.-.||-++.+|++.+-.
T Consensus       176 PSI~GGliVei--GdK~vDmSI~tr~q~l~~  204 (210)
T KOG1662|consen  176 PSIIGGLIVEI--GDKYVDMSIKTRLQKLNK  204 (210)
T ss_pred             hhhhcceEEEE--cCeeEeeeHHHHHHHHHH
Confidence            38999999988  778899999999977654

>PRK14474 F0F1 ATP synthase subunit B; Provisional

Probab=86.01  E-value=17  Score=29.46  Aligned_cols=108  Identities=14%  Similarity=0.126  Sum_probs=61.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhh-------------CCCcEEEEe----ccccHHHHHHHH
Q 031468           13 AQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRL-------------KEPAVLLRC----RKDDHHLVESVL   75 (159)
Q Consensus        13 ar~~~i~~v~~~a~~~L~~~~~~~~~Y~~~L~~Li~e~~~~l-------------~~~~v~v~~----~~~D~~~v~~~i   75 (159)
                      .+.++.+-++.-|.+-|.+..+.. ....++..+|.+- ..+             ++..++|+.    .|.+...++..+
T Consensus       121 L~~~v~~la~~~A~kiL~~~~d~~-~~~~lid~~i~~l-~~l~~~~r~~l~~~~~~~~~~~i~ta~~l~~~~~~~~~~~l  198 (250)
T PRK14474        121 LQQQTGQQMVKIIRAALADLANAT-LEQQIVGIFIARL-EHLSEAERQALANSNTTPEMLRIRTSFELSQDLRAQILESL  198 (250)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCHH-HHHHHHHHHHHHh-cccCHHHHHHHHhhhcCCCCeEEEeCCCCCHHHHHHHHHHH
Confidence            366677777777888888766543 5666666666422 112             112344443    233344444443


Q ss_pred             HHHHHHHHHhhCCCCCeEEecCccCCCCCCCCCCCCCCCccccEEEEecCCcEEEeccHHHHHHHHHHhc
Q 031468           76 ESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKK  145 (159)
Q Consensus        76 ~~~~~~~~~~~~~~~~~v~vd~~~~L~~~~~~~~~~~~~~~GGviv~s~dg~i~vdnTle~RL~~~~~~~  145 (159)
                      .+.      ..|. ++.+.+..      +        ++.+.|+.+..  |+-.|.+|+++-|+...+.+
T Consensus       199 ~~~------~~~~-~~~~~f~~------~--------p~li~Giel~~--~~~~i~ws~~~yl~~l~~~~  245 (250)
T PRK14474        199 HQT------HLIP-GTDIHFVT------S--------PELICGIELKT--EGYKIAWTLAEYLDALESQL  245 (250)
T ss_pred             HHH------hcCC-CCceeeec------C--------cccccCeEEec--CCceEeccHHHHHHHHHHHH
Confidence            320      1221 23333331      1        27899999998  66678999999997665443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	159
4dl0_J	233	Crystal Structure Of The Heterotrimeric Egchead Per		6e-16

>pdb|4DL0|J Chain J, Crystal Structure Of The Heterotrimeric Egchead Peripheral Stalk Complex Of The Yeast Vacuolar Atpase Length = 233

Iteration: 1
 Score = 79.7 bits (195), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 83/150 (55%), Gaps = 9/150 (6%)
Query: 4   NASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRC 63
           N  R+KVL A++  +  + E   +++  ++ + + YK +L+ LIV++LL+L EP  +++ 
Sbjct: 82  NKMRLKVLSAREQSLDGIFEETKEKLSGIANNRDEYKPILQSLIVEALLKLLEPKAIVKA 141
Query: 64  RKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLXXXXXXXXXXXXSCSGGVVVAS 123
            + D  L+ES+ +    EY +K Q  P E IV  + YL              SGGVVV++
Sbjct: 142 LERDVDLIESMKDDIMREYGEKAQRAPLEEIVISNDYLNKDL---------VSGGVVVSN 192
Query: 124 RDGKIVCENTLDARLDVVFRKKLPEIRKQL 153
              KI   NTL+ RL ++  + LP IR +L
Sbjct: 193 ASDKIEINNTLEERLKLLSEEALPAIRLEL 222

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	159
2dm9_A	198	V-type ATP synthase subunit E; A-ATPase, structura	9e-33
3v6i_A	187	V-type ATP synthase subunit E; peripheral stator s	4e-28
3lg8_A	106	A-type ATP synthase subunit E; archaea, peripheral	2e-17

>2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics, NPPSFA, national project on P structural and functional analyses; 1.85A {Pyrococcus horikoshii} SCOP: d.81.4.1 PDB: 2dma_A 4dt0_A Length = 198

 Score =  114 bits (286), Expect = 9e-33
 Identities = 33/153 (21%), Positives = 62/153 (40%), Gaps = 22/153 (14%)

Query: 1   MQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVL 60
                 R K L  Q++++S+++E   + +  +S D   Y + +K L+ +++  L E  V 
Sbjct: 66  NARLEVRRKRLAIQEEIISSVLEEVKRRLETMSED--EYFESVKALLKEAIKELNEKKVR 123

Query: 61  LRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVV 120
           +   +    L+ S +E  K E           +                       GGV+
Sbjct: 124 VMSNEKTLGLIASRIEEIKSELGDVSIELGETV--------------------DTMGGVI 163

Query: 121 VASRDGKIVCENTLDARLDVVFRKKLPEIRKQL 153
           V + DG+I  +NT +AR++    +    I K L
Sbjct: 164 VETEDGRIRIDNTFEARMERFEGEIRSTIAKVL 196

>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J Length = 187

 Score =  101 bits (254), Expect = 4e-28
 Identities = 22/147 (14%), Positives = 52/147 (35%), Gaps = 29/147 (19%)

Query: 7   RIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKD 66
                QA+ +++  +     + +  + +    + ++++ L +++L  L     L+    +
Sbjct: 68  ATARTQARGEVLEEVRRRVREALEALPQKPE-WPEVVRKLALEALEALPGAKALV-ANPE 125

Query: 67  DHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDG 126
           D   +E++      E   +                           P+   GV     +G
Sbjct: 126 DLPHLEALARERGVELQAE---------------------------PALRLGVRAVGAEG 158

Query: 127 KIVCENTLDARLDVVFRKKLPEIRKQL 153
           K   EN+L ARLD  +     ++ + L
Sbjct: 159 KTQVENSLLARLDRAWDALSSKVAQAL 185

>3lg8_A A-type ATP synthase subunit E; archaea, peripheral stalk, hydrolase, structural protein, TR protein; 4.10A {Methanocaldococcus jannaschii} Length = 106

 Score = 72.0 bits (176), Expect = 2e-17
 Identities = 23/120 (19%), Positives = 44/120 (36%), Gaps = 16/120 (13%)

Query: 35  DHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVE-SVLESAKEEYAQKLQVHPPEI 93
           +   YK  L  LI    + L    +++R  K D  L++ S L + ++E     +      
Sbjct: 1   EQPEYKDKLIKLIKDGAISLGGGELIVRLNKRDMELIDDSTLWNLEKEVENATKKV---- 56

Query: 94  IVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQL 153
                   P             +GG ++ + DG    +N+L+A  +         I ++L
Sbjct: 57  -TVLKKGEPV----------DIAGGCIIETADGLKSLDNSLEAIFNRNLNVIRARITEKL 105

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	159
4efa_E	233	V-type proton ATPase subunit E; heterotrimer, peri	100.0
3v6i_A	187	V-type ATP synthase subunit E; peripheral stator s	99.97
3lg8_A	106	A-type ATP synthase subunit E; archaea, peripheral	99.94
2dm9_A	198	V-type ATP synthase subunit E; A-ATPase, structura	99.93
2wss_S	190	ATP synthase subunit O, mitochondrial; hydrogen IO	87.65

>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A

Probab=100.00  E-value=6.8e-38  Score=249.19  Aligned_cols=149  Identities=34%  Similarity=0.529  Sum_probs=135.4

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhhCCCcEEEEeccccHHHHHHHHHHHHHH
Q 031468            2 QLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEE   81 (159)
Q Consensus         2 ~~n~aR~~~L~ar~~~i~~v~~~a~~~L~~~~~~~~~Y~~~L~~Li~e~~~~l~~~~v~v~~~~~D~~~v~~~i~~~~~~   81 (159)
                      ..|++|+++|.+|+++++++|+.|+++|..++.++..|+++|.+||.||+..+++++++|+|+|+|..++++++.++..+
T Consensus        80 ~~~~aR~~vL~ar~e~i~~v~~~a~~~L~~~~~d~~~Y~~lL~~Li~eal~~l~e~~v~V~~~~~D~~lv~~~l~~~~~~  159 (233)
T 4efa_E           80 IANKMRLKVLSAREQSLDGIFEETKEKLSGIANNRDEYKPILQSLIVEALLKLLEPKAIVKALERDVDLIESMKDDIMRE  159 (233)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHCCSEEEEEECTTTHHHHTTSHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCCCcEEEEecHhhHHHHHHHHHHHHHH
Confidence            46899999999999999999999999999999998899999999999999999999999999999999999999999999


Q ss_pred             HHHhhCCCCCeEEecCccCCCCCCCCCCCCCCCccccEEEEecCCcEEEeccHHHHHHHHHHhchHHHHHHhcCCCCC
Q 031468           82 YAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA  159 (159)
Q Consensus        82 ~~~~~~~~~~~v~vd~~~~L~~~~~~~~~~~~~~~GGviv~s~dg~i~vdnTle~RL~~~~~~~~p~I~~~LF~~~~~  159 (159)
                      |+..+++......++...+|+++         .|+|||+|++.||+|+|||||++||+.++++++|+||+.|||.|++
T Consensus       160 ~~~~~~~~~~~~~~~~~~~l~~~---------~~~GGvil~s~dGkI~vdNTle~RL~~~~~~~lp~Ir~~LFG~~~~  228 (233)
T 4efa_E          160 YGEKAQRAPLEEIVISNDYLNKD---------LVSGGVVVSNASDKIEINNTLEERLKLLSEEALPAIRLELYGPSKT  228 (233)
T ss_dssp             HHHHTTTSCCCEEEECSSCCCTT---------TCSSEEEEECTTSCCEEEEEHHHHHHHHHHHHHHHHHHHHSCCC--
T ss_pred             HHHHhCCCCccccccccccCCcc---------cccCceEEEECCCCEEEECCHHHHHHHHHHHHHHHHHHHHCCcCCC
Confidence            99988875444444445666553         7999999999999999999999999999999999999999999874

>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J

Probab=99.97  E-value=1.4e-29  Score=195.18  Aligned_cols=123  Identities=18%  Similarity=0.261  Sum_probs=110.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhhCCCcEEEEeccccHHHHHHHHHHHHHHHH
Q 031468            4 NASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYA   83 (159)
Q Consensus         4 n~aR~~~L~ar~~~i~~v~~~a~~~L~~~~~~~~~Y~~~L~~Li~e~~~~l~~~~v~v~~~~~D~~~v~~~i~~~~~~~~   83 (159)
                      .++|+++|.+|+++++++|+.|+++|.+++.++ .|+++|.+||.+|+..+++++++| |+|.|.+++++++.+    + 
T Consensus        65 le~r~~~L~ar~eli~~v~~~a~~~L~~~~~~~-~Y~~~L~~Li~ea~~~l~~~~~vv-~~~~D~~~v~~~~~~----~-  137 (187)
T 3v6i_A           65 LLVATARTQARGEVLEEVRRRVREALEALPQKP-EWPEVVRKLALEALEALPGAKALV-ANPEDLPHLEALARE----R-  137 (187)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGST-THHHHHHHHHHHHHHHCTTCCEEE-ECTTTHHHHHHHHHH----H-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCc-cHHHHHHHHHHHHHHHcCCCCeEE-ECHHHHHHHHHHHHh----c-
Confidence            578999999999999999999999999999985 799999999999999999998866 999999999988774    2 


Q ss_pred             HhhCCCCCeEEecCccCCCCCCCCCCCCCCCccccEEEEecCCcEEEeccHHHHHHHHHHhchHHHHHHhcC
Q 031468           84 QKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVS  155 (159)
Q Consensus        84 ~~~~~~~~~v~vd~~~~L~~~~~~~~~~~~~~~GGviv~s~dg~i~vdnTle~RL~~~~~~~~p~I~~~LF~  155 (159)
                            ++++..+                .+|.|||+|.+.||+|+|||||++||+.+|+.++|+|++.|||
T Consensus       138 ------~~~~~~~----------------~~~~GGvil~~~dG~I~vdnTle~rL~~~~~~~~~~I~~~LFg  187 (187)
T 3v6i_A          138 ------GVELQAE----------------PALRLGVRAVGAEGKTQVENSLLARLDRAWDALSSKVAQALWG  187 (187)
T ss_dssp             ------TCEEEEC----------------TTCCSEEEEECTTSSCEEEEEHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             ------CeeeCCC----------------CcccCceEEEeCCCCEEEECCHHHHHHHHHHHhHHHHHHHhcC
Confidence                  1343222                2789999999999999999999999999999999999999998

>3lg8_A A-type ATP synthase subunit E; archaea, peripheral stalk, hydrolase, structural protein, TR protein; 4.10A {Methanocaldococcus jannaschii}

Probab=99.94  E-value=7.8e-30  Score=180.79  Aligned_cols=102  Identities=22%  Similarity=0.323  Sum_probs=94.5

Q ss_pred             HHHHHHHHHHHHHHHhhCCCcEEEEeccccHHHHHHH-HHHHHHHHHHhhCCCCCeEEecCccCCCCCCCCCCCCCCCcc
Q 031468           38 SYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESV-LESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCS  116 (159)
Q Consensus        38 ~Y~~~L~~Li~e~~~~l~~~~v~v~~~~~D~~~v~~~-i~~~~~~~~~~~~~~~~~v~vd~~~~L~~~~~~~~~~~~~~~  116 (159)
                      +|+++|++||.||+..+++++++|+||++|.+++++. ++++.++|+.++|+ +++++++.       |       .+|+
T Consensus         4 ~Y~~lL~~LI~q~~~~l~e~~v~v~~r~~D~~lv~~~~l~~~~~e~~~~~g~-~~~v~~~~-------~-------~~~~   68 (106)
T 3lg8_A            4 EYKDKLIKLIKDGAISLGGGELIVRLNKRDMELIDDSTLWNLEKEVENATKK-VTVLKKGE-------P-------VDIA   68 (106)
T ss_dssp             STTTHHHHHHHHHHHHHTCSSCCCBCSSHHHHTTTTSSCTTTTTTHHHHSSS-CCCCCCCC-------C-------CSSS
T ss_pred             HHHHHHHHHHHHHHHHcCCCcEEEEECHhhHHHHHHhhHHHHHHHHHHHhCC-eEEEEeCC-------C-------cccc
Confidence            7999999999999999999999999999999999999 99999999998887 56666542       2       3899


Q ss_pred             ccEEEEecCCcEEEeccHHHHHHHHHHhchHHHHHHhc
Q 031468          117 GGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLV  154 (159)
Q Consensus       117 GGviv~s~dg~i~vdnTle~RL~~~~~~~~p~I~~~LF  154 (159)
                      |||++.+.+|+|+|||||++||++++++++|+|++.||
T Consensus        69 GGvil~s~dg~I~vdNTle~rL~~l~~~~~~eI~~~LF  106 (106)
T 3lg8_A           69 GGCIIETADGLKSLDNSLEAIFNRNLNVIRARITEKLF  106 (106)
T ss_dssp             CBCBCSSCSCBCCCCSHHHHSHHHHHHHHHHHTTTSCC
T ss_pred             ccEEEEeCCCCEEEECCHHHHHHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999

>2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics, NPPSFA, national project on P structural and functional analyses; 1.85A {Pyrococcus horikoshii} SCOP: d.81.4.1 PDB: 2dma_A 4dt0_A

Probab=99.93  E-value=1.7e-25  Score=171.48  Aligned_cols=131  Identities=25%  Similarity=0.371  Sum_probs=106.7

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhhCCCcEEEEeccccHHHHHHHHHHHHHHH
Q 031468            3 LNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEY   82 (159)
Q Consensus         3 ~n~aR~~~L~ar~~~i~~v~~~a~~~L~~~~~~~~~Y~~~L~~Li~e~~~~l~~~~v~v~~~~~D~~~v~~~i~~~~~~~   82 (159)
                      .+++|..++.+|+++++.+|..|++.|.+++  ++.|+++|.+||.+++..++++.++|+|+|.|.+.+++++..+...|
T Consensus        68 ~~~~r~~~l~~~~ev~~~~~~~a~~~l~~l~--~~~y~~~l~~li~e~~~~~~~~~v~i~v~~~D~~~v~~~~~~~~~~~  145 (198)
T 2dm9_A           68 RLEVRRKRLAIQEEIISSVLEEVKRRLETMS--EDEYFESVKALLKEAIKELNEKKVRVMSNEKTLGLIASRIEEIKSEL  145 (198)
T ss_dssp             -------------CHHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHHHHTCSEEEEECCHHHHHHHHHTHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHcCCCCEEEEECHhHHHHHHHHHHHHHHHh
Confidence            4678999999999999999999999999965  33899999999999999998889999999999999999999887777


Q ss_pred             HHhhCCCCCeEEecCccCCCCCCCCCCCCCCCccccEEEEecCCcEEEeccHHHHHHHHHHhchHHHHHHhcC
Q 031468           83 AQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVS  155 (159)
Q Consensus        83 ~~~~~~~~~~v~vd~~~~L~~~~~~~~~~~~~~~GGviv~s~dg~i~vdnTle~RL~~~~~~~~p~I~~~LF~  155 (159)
                      +      ++.++++.       |       ..+.|||+|.+.+|+|.|||||++||+.+++.+.|+|++.|||
T Consensus       146 ~------~~~l~i~~-------~-------~~~~GG~~i~~~~G~i~id~tl~~rl~~~~~~l~~~i~~~LF~  198 (198)
T 2dm9_A          146 G------DVSIELGE-------T-------VDTMGGVIVETEDGRIRIDNTFEARMERFEGEIRSTIAKVLFG  198 (198)
T ss_dssp             T------TCEEEECC-------C-------CCCSSEEEEEETTSSCEEEEEHHHHHHHTHHHHHHHHHHHHHC
T ss_pred             c------CceEEECC-------C-------CCccCceEEEeCCCCEEEECcHHHHHHHHHHHhHHHHHHHhcC
Confidence            5      25677752       1       2689999999999999999999999999999999999999997

>2wss_S ATP synthase subunit O, mitochondrial; hydrogen ION transport, ATP synthesis, phosphoprotein, UBL conjugation, transit peptide; HET: ANP ADP; 3.20A {Bos taurus} PDB: 2bo5_A 2jmx_A

Probab=87.65  E-value=0.019  Score=43.32  Aligned_cols=81  Identities=14%  Similarity=0.096  Sum_probs=39.0

Q ss_pred             EEeccccHHHHHHHHHHHHHHHHHhhCCCCCeEEecCccCCCCCCCC--------C----------CCCCCCccccEEEE
Q 031468           61 LRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGH--------H----------NAHGPSCSGGVVVA  122 (159)
Q Consensus        61 v~~~~~D~~~v~~~i~~~~~~~~~~~~~~~~~v~vd~~~~L~~~~~~--------~----------~~~~~~~~GGviv~  122 (159)
                      +-+...-...+.+++..+..-+....|.  ..++|-...+|+++...        .          ...|++++||++|.
T Consensus        88 ll~~~~R~~~l~~I~~~f~~l~~~~~~~--~~a~V~sA~~Ls~~q~~~l~~~L~~~~g~~~~v~l~~~vDpsLiGG~~v~  165 (190)
T 2wss_S           88 LLAENGRLTNTPAVISAFSTMMSVHRGE--VPCTVTTASALDETTLTELKTVLKSFLSKGQVLKLEVKIDPSIMGGMIVR  165 (190)
T ss_dssp             HHHHTTCGGGHHHHHHHHHHHHTTTSCC--CCBCSSSCBCCCCSSSTTTTTTTTSSTTTCC-------------------
T ss_pred             HHHhCCcHhhHHHHHHHHHHHHHHHcCe--eEEEEEECCCCCHHHHHHHHHHHHHHHCCCCeEEEEEEEChhHhCeEEEE
Confidence            3444455667777777666665554443  34444444556554321        0          11357899999999


Q ss_pred             ecCCcEEEeccHHHHHHHHHHhc
Q 031468          123 SRDGKIVCENTLDARLDVVFRKK  145 (159)
Q Consensus       123 s~dg~i~vdnTle~RL~~~~~~~  145 (159)
                      -  |.-++|.|+.+||+.+...+
T Consensus       166 v--gd~viD~Sv~~~L~~l~~~L  186 (190)
T 2wss_S          166 I--GEKYVDMSAKTKIQKLSRAM  186 (190)
T ss_dssp             -----CCTTTTTTTTTTTTCTTT
T ss_pred             E--CCEEEehhHHHHHHHHHHHH
Confidence            8  77789999999998776554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	159
d2dm9a1	118	d.81.4.1 (A:81-198) V-type ATP synthase subunit E	2e-30

>d2dm9a1 d.81.4.1 (A:81-198) V-type ATP synthase subunit E {Pyrococcus horikoshii [TaxId: 53953]} Length = 118

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: V-type ATPase subunit E-like
family: V-type ATPase subunit E
domain: V-type ATP synthase subunit E
species: Pyrococcus horikoshii [TaxId: 53953]

 Score =  104 bits (262), Expect = 2e-30
 Identities = 30/138 (21%), Positives = 58/138 (42%), Gaps = 22/138 (15%)

Query: 16  DLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVL 75
           +++S+++E   + +  +S D   Y + +K L+ +++  L E  V +   +    L+ S +
Sbjct: 1   EIISSVLEEVKRRLETMSEDE--YFESVKALLKEAIKELNEKKVRVMSNEKTLGLIASRI 58

Query: 76  ESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLD 135
           E  K E           I +                     GGV+V + DG+I  +NT +
Sbjct: 59  EEIKSELGDV------SIELGE--------------TVDTMGGVIVETEDGRIRIDNTFE 98

Query: 136 ARLDVVFRKKLPEIRKQL 153
           AR++    +    I K L
Sbjct: 99  ARMERFEGEIRSTIAKVL 116

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	159
d2dm9a1	118	V-type ATP synthase subunit E {Pyrococcus horikosh	99.97

>d2dm9a1 d.81.4.1 (A:81-198) V-type ATP synthase subunit E {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: V-type ATPase subunit E-like
family: V-type ATPase subunit E
domain: V-type ATP synthase subunit E
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.97  E-value=4e-31  Score=188.45  Aligned_cols=118  Identities=25%  Similarity=0.403  Sum_probs=107.3

Q ss_pred             HHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhhCCCcEEEEeccccHHHHHHHHHHHHHHHHHhhCCCCCeEEe
Q 031468           16 DLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIV   95 (159)
Q Consensus        16 ~~i~~v~~~a~~~L~~~~~~~~~Y~~~L~~Li~e~~~~l~~~~v~v~~~~~D~~~v~~~i~~~~~~~~~~~~~~~~~v~v   95 (159)
                      ++++++|++|+++|.+++++  +|+++|++||.+|+..+++++++|+|+|+|.+++++++.++..+|+      +..+++
T Consensus         1 E~i~~v~~~a~~~l~~~~~~--~Y~~~L~~Li~~a~~~l~~~ev~v~~~~~D~~~v~~~~~~~~~~~~------~~~~~~   72 (118)
T d2dm9a1           1 EIISSVLEEVKRRLETMSED--EYFESVKALLKEAIKELNEKKVRVMSNEKTLGLIASRIEEIKSELG------DVSIEL   72 (118)
T ss_dssp             CHHHHHHHHHHHHHHHCCHH--HHHHHHHHHHHHHHHHHTCSEEEEECCHHHHHHHHHTHHHHHHHCT------TCEEEE
T ss_pred             CHHHHHHHHHHHHHHccChh--HHHHHHHHHHHHHHHHhCCCcEEEEEchhhHHHHHHHHHHHHHHcC------CceeEe
Confidence            47999999999999999764  8999999999999999999999999999999999999998877665      356666


Q ss_pred             cCccCCCCCCCCCCCCCCCccccEEEEecCCcEEEeccHHHHHHHHHHhchHHHHHHhcC
Q 031468           96 DHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVS  155 (159)
Q Consensus        96 d~~~~L~~~~~~~~~~~~~~~GGviv~s~dg~i~vdnTle~RL~~~~~~~~p~I~~~LF~  155 (159)
                      +.       |       .+|.|||+|+|.||+|.|||||++||+++|++++|+|++.|||
T Consensus        73 ~~-------~-------~~~~GGvil~s~dG~I~vdnTle~rl~~~~e~~~~~i~~~LFG  118 (118)
T d2dm9a1          73 GE-------T-------VDTMGGVIVETEDGRIRIDNTFEARMERFEGEIRSTIAKVLFG  118 (118)
T ss_dssp             CC-------C-------CCCSSEEEEEETTSSCEEEEEHHHHHHHTHHHHHHHHHHHHHC
T ss_pred             CC-------C-------CccCCCEEEEecCCCEEEECcHHHHHHHHHHHhHHHHHHHccC
Confidence            52       1       3899999999999999999999999999999999999999998