Citrus Sinensis ID: 031480

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------16
Protein Sequence
MAEQTEKAFLKQPKVFLSSKKAGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAFTAM
Secondary Structure (PSIPRED)
cccHHcccccccccEEcccccccccccccccccEEEEEEccccccccccccccccccccccccccEEEcEEEEEEEEEcccccEEEEEEEEEEEEccccEEEEEEEEEEEEcccccccccccEEEEcEEccccccEEEEEEEEEEcccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHccccEEEcccHccccccccccccEEEEEccccccccHHHHcccEEccccccccEEEEEEEEEEEEEEEcccccEEEEEHHHHHHHHHHHHHHHHcccccccccccEEEEcccEEEEEEEcccccEEEEEEEEEEccccccccccccccc
Coil and Loop (DISEMBL)
MAEQTEKAFLkqpkvflsskkagkgkrpgkggnrfwksiglgfktpreaiegtyidkkcpftgtvsirgrilagtchsakmNRTIIVRRNYLHFVKKYQRYEkrhsnipahispcfrvkegdhviigqcrplsktvrfnvlkvipagssggaKKAFTAM
Flexible Loop (DISEMBL)
maeqtekaflkqpkvflsskkagkgkrpgkggnrfwksiglgfktprEAIEgtyidkkcpftgtVSIRGRILagtchsakmnrtiivRRNYLHFVKKYQRyekrhsnipahispcfrvKEGDHVIIGQcrplsktvrFNVLkvipagssggakkaftam
Low Complexity Region (SEG)
MAEQTEKAFLKQPKVFLSSkkagkgkrpgkggNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAFTAM
Disordered region (IsUnstruct)
*********************************RFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIP**************
Disordered Region (DISOPRED)
*AEQTEKAFLKQPKVFL*****************FWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKV*********KKAFTAM
Disordered Region (DISEMBL)
*********LKQPKVFLSSK**********GGNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAFTAM
Disordered Region (DISPRO)
****TEKAFLKQPKVFLSSKKAG******KGGNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPA*************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAEQTEKAFLKQPKVFLSSKKAGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAFTAM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	159	2.2.26 [Sep-21-2011]
Q9M5M1	159	40S ribosomal protein S11	N/A	no	1.0	1.0	0.955	1e-78
P17093	159	40S ribosomal protein S11	yes	no	1.0	1.0	0.955	1e-77
P42733	159	40S ribosomal protein S11	yes	no	1.0	1.0	0.911	4e-75
P16181	160	40S ribosomal protein S11	no	no	1.0	0.993	0.912	6e-74
O65569	159	40S ribosomal protein S11	no	no	1.0	1.0	0.911	2e-73
P25460	159	40S ribosomal protein S11	N/A	no	0.993	0.993	0.949	6e-72
P42756	157	40S ribosomal protein S11	N/A	no	0.981	0.993	0.687	1e-57
P41115	158	40S ribosomal protein S11	N/A	no	0.962	0.968	0.601	1e-50
Q54S90	155	40S ribosomal protein S11	yes	no	0.968	0.993	0.636	2e-50
P62282	158	40S ribosomal protein S11	yes	no	0.962	0.968	0.607	9e-50

>sp|Q9M5M1|RS11_EUPES 40S ribosomal protein S11 OS=Euphorbia esula GN=RPS11 PE=2 SV=1

 Score =  291 bits (744), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 152/159 (95%), Positives = 157/159 (98%)

Query: 1   MAEQTEKAFLKQPKVFLSSKKAGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFL+SKK GKGKRPGKGGNRFWKSIGLGFKTPREAI+GTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLASKKTGKGKRPGKGGNRFWKSIGLGFKTPREAIDGTYIDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHF+KKYQRYEKRHSNIPAH+SPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFIKKYQRYEKRHSNIPAHVSPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAFTAM 159
           GDHVIIGQCRPLSKTVRFNVLKVIPAGSSGG KKAFTA+
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGVKKAFTAI 159

Euphorbia esula (taxid: 3993)

>sp|P17093|RS11_SOYBN 40S ribosomal protein S11 OS=Glycine max GN=RPS11 PE=2 SV=2

 Score =  288 bits (736), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 152/159 (95%), Positives = 154/159 (96%)

Query: 1   MAEQTEKAFLKQPKVFLSSKKAGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLS+KK GKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSTKKTGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTG VSIRGRILAGTCHSAKMNRTIIVRRNYLHF+KKYQRYEKRHSNIPAHISP FRVKE
Sbjct: 61  FTGNVSIRGRILAGTCHSAKMNRTIIVRRNYLHFIKKYQRYEKRHSNIPAHISPAFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAFTAM 159
           GDHVIIGQCRPLSKTVRFNVLKVIPAGSS GAKKAFT M
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSGAKKAFTGM 159

Glycine max (taxid: 3847)

>sp|P42733|RS113_ARATH 40S ribosomal protein S11-3 OS=Arabidopsis thaliana GN=RPS11C PE=2 SV=2

 Score =  279 bits (714), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 145/159 (91%), Positives = 151/159 (94%)

Query: 1   MAEQTEKAFLKQPKVFLSSKKAGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLSSK +GKGKRPGKGGNRFWK+IGLGFKTPREAI+G YID KCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKISGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYIDSKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTGTVSIRGRILAGTCHSAKM RTIIVRRNYLHFVKKYQRYEKRHSNIPAH+SPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMQRTIIVRRNYLHFVKKYQRYEKRHSNIPAHVSPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAFTAM 159
           GDHVIIGQCRPLSKTVRFNVLKVIPAG+S   KKAFT +
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGASAFGKKAFTGV 159

Arabidopsis thaliana (taxid: 3702)

>sp|P16181|RS111_ARATH 40S ribosomal protein S11-1 OS=Arabidopsis thaliana GN=RPS11A PE=2 SV=1

 Score =  276 bits (705), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 146/160 (91%), Positives = 153/160 (95%), Gaps = 1/160 (0%)

Query: 1   MAEQTEKAFLKQPKVFLSSKKAGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLSSKK+GKGKRPGKGGNRFWK+IGLGFKTPREAI+G Y+DKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYVDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTGTVSIRGRILAGTCHSAKM RTIIVRR+YLHFVKKYQRYEKRHSNIPAH+SPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMQRTIIVRRDYLHFVKKYQRYEKRHSNIPAHVSPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSGG-AKKAFTAM 159
           GDH+IIGQCRPLSKTVRFNVLKVIPAGSS    KKAFT M
Sbjct: 121 GDHIIIGQCRPLSKTVRFNVLKVIPAGSSSSFGKKAFTGM 160

Arabidopsis thaliana (taxid: 3702)

>sp|O65569|RS112_ARATH 40S ribosomal protein S11-2 OS=Arabidopsis thaliana GN=RPS11B PE=2 SV=2

 Score =  274 bits (700), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 145/159 (91%), Positives = 152/159 (95%)

Query: 1   MAEQTEKAFLKQPKVFLSSKKAGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLSSKK+GKGKRPGKGGNRFWK+IGLGFKTPREAIEGTYID+KCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIEGTYIDQKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTGTVSIRGRIL+GTCHSAKM RTIIVRR+YLHFVKKY+RYEKRHSNIPAH+SPCFRVKE
Sbjct: 61  FTGTVSIRGRILSGTCHSAKMQRTIIVRRDYLHFVKKYRRYEKRHSNIPAHVSPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAFTAM 159
           GD V IGQCRPLSKTVRFNVLKVIPAGSS   KKAFT M
Sbjct: 121 GDRVTIGQCRPLSKTVRFNVLKVIPAGSSSIGKKAFTGM 159

Arabidopsis thaliana (taxid: 3702)

>sp|P25460|RS11_MAIZE 40S ribosomal protein S11 OS=Zea mays GN=RPS11 PE=2 SV=1

 Score =  269 bits (687), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 150/158 (94%), Positives = 155/158 (98%)

Query: 1   MAEQTEKAFLKQPKVFLSSKKAGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLSSKK+GKGK+PGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKKPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTGTVSIRGRI+AGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKE
Sbjct: 61  FTGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAFTA 158
           GDHVIIGQCRPLSKTVRFNV+KVIPAGS+   KKAFTA
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVVKVIPAGSAAAGKKAFTA 158

Zea mays (taxid: 4577)

>sp|P42756|RS11_DUNTE 40S ribosomal protein S11 OS=Dunaliella tertiolecta GN=RPS11 PE=2 SV=1

 Score =  221 bits (564), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 110/160 (68%), Positives = 132/160 (82%), Gaps = 4/160 (2%)

Query: 1   MAEQTEKAFLKQPKVFLSSKKAGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60
           MAEQTEKAF KQ  V     K+ + K PGK G+RF+K++GL FKTP+EAI+G Y+DKKCP
Sbjct: 1   MAEQTEKAFQKQVGV-TGCFKSKEKKAPGKSGHRFFKNVGLNFKTPKEAIDGNYVDKKCP 59

Query: 61  FTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTG VSIRGRIL G   S+KM RTIIVRR+YLHF+ KY RYEKRH+NIPAH+SPCFRV++
Sbjct: 60  FTGNVSIRGRILTGVVKSSKMMRTIIVRRDYLHFIPKYARYEKRHTNIPAHVSPCFRVRD 119

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIP-AGSSGGAKKAFTAM 159
           GD VIIGQCRPLSKT+RFNVL+VIP AG++G  KK+F+  
Sbjct: 120 GDTVIIGQCRPLSKTIRFNVLRVIPQAGATG--KKSFSGF 157

Dunaliella tertiolecta (taxid: 3047)

>sp|P41115|RS11_XENLA 40S ribosomal protein S11 OS=Xenopus laevis GN=rps11 PE=2 SV=1

 Score =  198 bits (503), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 95/158 (60%), Positives = 122/158 (77%), Gaps = 5/158 (3%)

Query: 1   MAE-QTEKAFLKQPKVFLSSKKAGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKC 59
           MA+ QTE+A+ KQP +F + K+  +G+   +   R+++S+GLGFKTPREAI+GTYIDKKC
Sbjct: 1   MADIQTERAYQKQPTIFQNKKRVLEGETGKEKLPRYYRSVGLGFKTPREAIDGTYIDKKC 60

Query: 60  PFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFR-V 118
           PFTG VSIRGRIL+G     KM RTI++RR+YLH+++KY R+EKRH N+  H+SPCFR V
Sbjct: 61  PFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV 120

Query: 119 KEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAF 156
           + GD V +G+CRPLSKTVRFNVLKV  A    G KK F
Sbjct: 121 QVGDTVTVGECRPLSKTVRFNVLKVTKA---AGTKKQF 155

Xenopus laevis (taxid: 8355)

>sp|Q54S90|RS11_DICDI 40S ribosomal protein S11 OS=Dictyostelium discoideum GN=rps11 PE=1 SV=1

 Score =  197 bits (501), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 100/157 (63%), Positives = 119/157 (75%), Gaps = 3/157 (1%)

Query: 1   MAE-QTEKAFLKQPKVFLSSKKAGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKC 59
           MA+ Q EKAF KQ   F +  +    K  GK G R++K+IGLG++TP++AIEGTYIDKKC
Sbjct: 1   MADIQAEKAFQKQQVSFKNRFQLKASK--GKEGIRYYKNIGLGYRTPKDAIEGTYIDKKC 58

Query: 60  PFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVK 119
           PFT  VSIRG IL GT  S KM RT++VRRNYLH++KKY R+EKRHSNIPAH+SP F VK
Sbjct: 59  PFTSDVSIRGAILRGTVISTKMRRTLVVRRNYLHYIKKYNRFEKRHSNIPAHVSPAFNVK 118

Query: 120 EGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAF 156
           EGD V IGQCRPLSKTVRFNV+K   + +S    KAF
Sbjct: 119 EGDSVTIGQCRPLSKTVRFNVIKHDISAASKKQFKAF 155

Dictyostelium discoideum (taxid: 44689)

>sp|P62282|RS11_RAT 40S ribosomal protein S11 OS=Rattus norvegicus GN=Rps11 PE=1 SV=3

 Score =  195 bits (496), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 96/158 (60%), Positives = 121/158 (76%), Gaps = 5/158 (3%)

Query: 1   MAE-QTEKAFLKQPKVFLSSKKAGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKC 59
           MA+ QTE+A+ KQP +F + K+   G+   +   R++K+IGLGFKTP+EAIEGTYIDKKC
Sbjct: 1   MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC 60

Query: 60  PFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFR-V 118
           PFTG VSIRGRIL+G     KM RTI++RR+YLH+++KY R+EKRH N+  H+SPCFR V
Sbjct: 61  PFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV 120

Query: 119 KEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAF 156
           + GD V +G+CRPLSKTVRFNVLKV  A    G KK F
Sbjct: 121 QIGDIVTVGECRPLSKTVRFNVLKVTKA---AGTKKQF 155

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	159
255571087	159	40S ribosomal protein S11, putative [Ric	1.0	1.0	0.987	7e-87
326497551	159	predicted protein [Hordeum vulgare subsp	0.993	0.993	0.917	1e-81
242065758	160	hypothetical protein SORBIDRAFT_04g02587	0.993	0.987	0.943	1e-81
297802956	159	40S ribosomal protein S11 [Arabidopsis l	1.0	1.0	0.918	7e-81
414586503	571	TPA: 40S ribosomal protein S11 [Zea mays	0.993	0.276	0.924	1e-80
326496288	159	predicted protein [Hordeum vulgare subsp	0.993	0.993	0.911	1e-80
226506626	160	40S ribosomal protein S11 [Zea mays] gi|	0.993	0.987	0.924	2e-80
195626802	160	40S ribosomal protein S11 [Zea mays]	0.993	0.987	0.918	1e-79
357168464	169	PREDICTED: 40S ribosomal protein S11-lik	0.987	0.928	0.905	2e-79
449454301	159	PREDICTED: 40S ribosomal protein S11-3-l	1.0	1.0	0.899	2e-78

>gi|255571087|ref|XP_002526494.1| 40S ribosomal protein S11, putative [Ricinus communis] gi|223534169|gb|EEF35885.1| 40S ribosomal protein S11, putative [Ricinus communis]

 Score =  324 bits (831), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 157/159 (98%), Positives = 158/159 (99%)

Query: 1   MAEQTEKAFLKQPKVFLSSKKAGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLSSKK GKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKTGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHF+KKYQRYEKRHSNIPAHISPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFIKKYQRYEKRHSNIPAHISPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAFTAM 159
           GDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAFTAM
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAFTAM 159

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326497551|dbj|BAK05865.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  307 bits (786), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 145/158 (91%), Positives = 153/158 (96%)

Query: 1   MAEQTEKAFLKQPKVFLSSKKAGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60
           MAEQTEK+FLKQPKVFLS+KKA K KRPGK GNRFWKS+GLGFKTPREAIEGTYIDKKCP
Sbjct: 1   MAEQTEKSFLKQPKVFLSTKKADKAKRPGKAGNRFWKSVGLGFKTPREAIEGTYIDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTGTV+IRGRI+AGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKE
Sbjct: 61  FTGTVAIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAFTA 158
           GDHVIIGQCRPLSKTVRFNVLKV+PAG++GG KKAF A
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVVPAGTTGGGKKAFIA 158

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242065758|ref|XP_002454168.1| hypothetical protein SORBIDRAFT_04g025870 [Sorghum bicolor] gi|242076386|ref|XP_002448129.1| hypothetical protein SORBIDRAFT_06g021750 [Sorghum bicolor] gi|241933999|gb|EES07144.1| hypothetical protein SORBIDRAFT_04g025870 [Sorghum bicolor] gi|241939312|gb|EES12457.1| hypothetical protein SORBIDRAFT_06g021750 [Sorghum bicolor]

 Score =  306 bits (785), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 150/159 (94%), Positives = 153/159 (96%), Gaps = 1/159 (0%)

Query: 1   MAEQTEKAFLKQPKVFLSSKKAGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFL SKKA KG +PGKGGNRFWK+IGLGFKTPREAIEGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLCSKKAAKGNKPGKGGNRFWKNIGLGFKTPREAIEGTYIDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTGTVSIRGRI+AGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKE
Sbjct: 61  FTGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGS-SGGAKKAFTA 158
           GDHVIIGQCRPLSKTVRFNVLKVIPAGS SG  KKAFTA
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSKSGAVKKAFTA 159

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297802956|ref|XP_002869362.1| 40S ribosomal protein S11 [Arabidopsis lyrata subsp. lyrata] gi|297315198|gb|EFH45621.1| 40S ribosomal protein S11 [Arabidopsis lyrata subsp. lyrata]

 Score =  304 bits (779), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 146/159 (91%), Positives = 151/159 (94%)

Query: 1   MAEQTEKAFLKQPKVFLSSKKAGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLSSKK+GK KRPGKGGNRFWK+IGLGFKTPREAIEG Y+DKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKEKRPGKGGNRFWKNIGLGFKTPREAIEGAYVDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTGTVSIRGRILAGTCHSAKM RTIIVRR+YLHFVKKYQRYEKRHSNIPAH+SPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMQRTIIVRRDYLHFVKKYQRYEKRHSNIPAHVSPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAFTAM 159
           GDHV IGQCRPLSKTVRFNVLKVIPAGSS   KKAFT M
Sbjct: 121 GDHVTIGQCRPLSKTVRFNVLKVIPAGSSSIGKKAFTGM 159

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|414586503|tpg|DAA37074.1| TPA: 40S ribosomal protein S11 [Zea mays]

 Score =  304 bits (778), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 147/159 (92%), Positives = 152/159 (95%), Gaps = 1/159 (0%)

Query: 1   MAEQTEKAFLKQPKVFLSSKKAGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60
           MAEQTE+AFLKQPKVFL SKKA K  +PGKGGNRFWK+IGLGFKTPREAIEGTYIDKKCP
Sbjct: 412 MAEQTERAFLKQPKVFLCSKKATKVNKPGKGGNRFWKNIGLGFKTPREAIEGTYIDKKCP 471

Query: 61  FTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTGTVSIRGRI+AGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKE
Sbjct: 472 FTGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKE 531

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGS-SGGAKKAFTA 158
           GDHVIIGQCRP+SKTVRFNVLKVIPAGS SG  KKAFTA
Sbjct: 532 GDHVIIGQCRPVSKTVRFNVLKVIPAGSKSGAVKKAFTA 570

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326496288|dbj|BAJ94606.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  303 bits (777), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 144/158 (91%), Positives = 152/158 (96%)

Query: 1   MAEQTEKAFLKQPKVFLSSKKAGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60
           MAEQTEK+FLKQPKVFLS+KKA K KRPGK GNRFWKS+GLGFKTPREAIEGTYIDKKCP
Sbjct: 1   MAEQTEKSFLKQPKVFLSTKKADKAKRPGKAGNRFWKSVGLGFKTPREAIEGTYIDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTGTV+IRGRI+AGT HSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKE
Sbjct: 61  FTGTVAIRGRIIAGTYHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAFTA 158
           GDHVIIGQCRPLSKTVRFNVLKV+PAG++GG KKAF A
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVVPAGTTGGGKKAFIA 158

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226506626|ref|NP_001146950.1| 40S ribosomal protein S11 [Zea mays] gi|195605736|gb|ACG24698.1| 40S ribosomal protein S11 [Zea mays]

 Score =  303 bits (776), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 147/159 (92%), Positives = 153/159 (96%), Gaps = 1/159 (0%)

Query: 1   MAEQTEKAFLKQPKVFLSSKKAGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60
           MAEQTE+AFLKQPKVFL SKKA KG +PGKGGNRFWK+IGLGFKTPREAIEGTYIDKKCP
Sbjct: 1   MAEQTERAFLKQPKVFLCSKKASKGNKPGKGGNRFWKNIGLGFKTPREAIEGTYIDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTGTVSIRGRI+AGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKE
Sbjct: 61  FTGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGS-SGGAKKAFTA 158
           GDHVIIGQCRP+SKTVRFNV+KVIPAGS SG  KKAFTA
Sbjct: 121 GDHVIIGQCRPVSKTVRFNVVKVIPAGSKSGAVKKAFTA 159

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|195626802|gb|ACG35231.1| 40S ribosomal protein S11 [Zea mays]

 Score =  300 bits (768), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 146/159 (91%), Positives = 152/159 (95%), Gaps = 1/159 (0%)

Query: 1   MAEQTEKAFLKQPKVFLSSKKAGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60
           MAEQTE+AFLKQPKVFL SKKA K  +PGKGGNRFWK+IGLGFKTPREAIEGTYIDKKCP
Sbjct: 1   MAEQTERAFLKQPKVFLCSKKATKVNKPGKGGNRFWKNIGLGFKTPREAIEGTYIDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTGTVSIRGRI+AGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKE
Sbjct: 61  FTGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGS-SGGAKKAFTA 158
           GDHVIIGQCRP+SKTVRFNV+KVIPAGS SG  KKAFTA
Sbjct: 121 GDHVIIGQCRPVSKTVRFNVVKVIPAGSKSGAVKKAFTA 159

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357168464|ref|XP_003581660.1| PREDICTED: 40S ribosomal protein S11-like [Brachypodium distachyon]

 Score =  299 bits (766), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 143/158 (90%), Positives = 152/158 (96%), Gaps = 1/158 (0%)

Query: 1   MAEQTEKAFLKQPKVFLSSKKAGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60
           +A QTEKAFLKQPKVFLS+KKA K KRPGK GNRFWKS+GLGFKTPREAIEGTYIDKKCP
Sbjct: 12  LAVQTEKAFLKQPKVFLSTKKADKAKRPGKAGNRFWKSVGLGFKTPREAIEGTYIDKKCP 71

Query: 61  FTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTGTV+IRGRI+AGTCHSAKMNRTIIVRR+YLHFVKKYQRYEKRHSNIPAHISPCFR++E
Sbjct: 72  FTGTVAIRGRIIAGTCHSAKMNRTIIVRRDYLHFVKKYQRYEKRHSNIPAHISPCFRIRE 131

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAFTA 158
           GDHVIIGQCRPLSKTVRFNVLKVIPAGS+GG KKAF A
Sbjct: 132 GDHVIIGQCRPLSKTVRFNVLKVIPAGSTGG-KKAFVA 168

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449454301|ref|XP_004144894.1| PREDICTED: 40S ribosomal protein S11-3-like [Cucumis sativus] gi|449471994|ref|XP_004153463.1| PREDICTED: 40S ribosomal protein S11-3-like [Cucumis sativus] gi|449522568|ref|XP_004168298.1| PREDICTED: 40S ribosomal protein S11-3-like [Cucumis sativus]

 Score =  296 bits (759), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 143/159 (89%), Positives = 148/159 (93%)

Query: 1   MAEQTEKAFLKQPKVFLSSKKAGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFL SKK  KG +PGKGGNRFWK+IGLGFKTPR+AIEGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLCSKKTAKGNKPGKGGNRFWKNIGLGFKTPRDAIEGTYIDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKE 120
           F GTVSIRGRILAGTCHSAKM RTIIVRRNYLH+VKKYQRYEKRHSNIPAHISPCFRVKE
Sbjct: 61  FAGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAFTAM 159
           GDHVIIGQCRPLSKTVRFNVLKVIPAGSS   KKAF  +
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAFAGI 159

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	159
TAIR|locus:2172783	159	RPS11-BETA "ribosomal protein	1.0	1.0	0.842	3e-69
TAIR|locus:2101278	160	EMB1080 "embryo defective 1080	1.0	0.993	0.837	3.8e-69
TAIR|locus:2126639	159	AT4G30800 [Arabidopsis thalian	1.0	1.0	0.836	3.5e-68
ASPGD|ASPL0000026885	160	AN5222 [Emericella nidulans (t	0.949	0.943	0.616	2.6e-47
UNIPROTKB|Q3T0V4	158	RPS11 "40S ribosomal protein S	0.962	0.968	0.594	3.8e-46
UNIPROTKB|F2Z4N5	158	RPS11 "40S ribosomal protein S	0.962	0.968	0.594	3.8e-46
UNIPROTKB|P62280	158	RPS11 "40S ribosomal protein S	0.962	0.968	0.594	3.8e-46
UNIPROTKB|F2Z4Y8	158	RPS11 "Uncharacterized protein	0.962	0.968	0.594	3.8e-46
MGI|MGI:1351329	158	Rps11 "ribosomal protein S11"	0.962	0.968	0.594	3.8e-46
RGD|621026	158	Rps11 "ribosomal protein S11"	0.962	0.968	0.594	3.8e-46

TAIR|locus:2172783 RPS11-BETA "ribosomal protein S11-beta" [Arabidopsis thaliana (taxid:3702)]

 Score = 702 (252.2 bits), Expect = 3.0e-69, P = 3.0e-69
 Identities = 134/159 (84%), Positives = 139/159 (87%)

Query:     1 MAEQTEKAFLKQPKVFLSSXXXXXXXXXXXXXNRFWKSIGLGFKTPREAIEGTYIDKKCP 60
             MAEQTEKAFLKQPKVFLSS             NRFWK+IGLGFKTPREAI+G YID KCP
Sbjct:     1 MAEQTEKAFLKQPKVFLSSKISGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYIDSKCP 60

Query:    61 FTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKE 120
             FTGTVSIRGRILAGTCHSAKM RTIIVRRNYLHFVKKYQRYEKRHSNIPAH+SPCFRVKE
Sbjct:    61 FTGTVSIRGRILAGTCHSAKMQRTIIVRRNYLHFVKKYQRYEKRHSNIPAHVSPCFRVKE 120

Query:   121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAFTAM 159
             GDHVIIGQCRPLSKTVRFNVLKVIPAG+S   KKAFT +
Sbjct:   121 GDHVIIGQCRPLSKTVRFNVLKVIPAGASAFGKKAFTGV 159

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA;ISS

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS

GO:0016020 "membrane" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

TAIR|locus:2101278 EMB1080 "embryo defective 1080" [Arabidopsis thaliana (taxid:3702)]

 Score = 701 (251.8 bits), Expect = 3.8e-69, P = 3.8e-69
 Identities = 134/160 (83%), Positives = 140/160 (87%)

Query:     1 MAEQTEKAFLKQPKVFLSSXXXXXXXXXXXXXNRFWKSIGLGFKTPREAIEGTYIDKKCP 60
             MAEQTEKAFLKQPKVFLSS             NRFWK+IGLGFKTPREAI+G Y+DKKCP
Sbjct:     1 MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYVDKKCP 60

Query:    61 FTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKE 120
             FTGTVSIRGRILAGTCHSAKM RTIIVRR+YLHFVKKYQRYEKRHSNIPAH+SPCFRVKE
Sbjct:    61 FTGTVSIRGRILAGTCHSAKMQRTIIVRRDYLHFVKKYQRYEKRHSNIPAHVSPCFRVKE 120

Query:   121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSGG-AKKAFTAM 159
             GDH+IIGQCRPLSKTVRFNVLKVIPAGSS    KKAFT M
Sbjct:   121 GDHIIIGQCRPLSKTVRFNVLKVIPAGSSSSFGKKAFTGM 160

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA;ISS

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS;IDA

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2126639 AT4G30800 [Arabidopsis thaliana (taxid:3702)]

 Score = 692 (248.7 bits), Expect = 3.5e-68, P = 3.5e-68
 Identities = 133/159 (83%), Positives = 139/159 (87%)

Query:     1 MAEQTEKAFLKQPKVFLSSXXXXXXXXXXXXXNRFWKSIGLGFKTPREAIEGTYIDKKCP 60
             MAEQTEKAFLKQPKVFLSS             NRFWK+IGLGFKTPREAIEGTYID+KCP
Sbjct:     1 MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIEGTYIDQKCP 60

Query:    61 FTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKE 120
             FTGTVSIRGRIL+GTCHSAKM RTIIVRR+YLHFVKKY+RYEKRHSNIPAH+SPCFRVKE
Sbjct:    61 FTGTVSIRGRILSGTCHSAKMQRTIIVRRDYLHFVKKYRRYEKRHSNIPAHVSPCFRVKE 120

Query:   121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAFTAM 159
             GD V IGQCRPLSKTVRFNVLKVIPAGSS   KKAFT M
Sbjct:   121 GDRVTIGQCRPLSKTVRFNVLKVIPAGSSSIGKKAFTGM 159

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA;ISS

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS;IDA

GO:0005829 "cytosol" evidence=RCA

GO:0001510 "RNA methylation" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0034968 "histone lysine methylation" evidence=RCA

ASPGD|ASPL0000026885 AN5222 [Emericella nidulans (taxid:162425)]

 Score = 495 (179.3 bits), Expect = 2.6e-47, P = 2.6e-47
 Identities = 95/154 (61%), Positives = 116/154 (75%)

Query:     4 QTEKAFLKQPKVFLSSXXXXXXXXXXXXXNRFWKSIGLGFKTPREAIEGTYIDKKCPFTG 63
             Q+E+AF KQP +FL+               R++K +GLGF+TP+ AIEG+YIDKKCPFTG
Sbjct:     8 QSERAFQKQPHIFLNPKTKAKSKKVGQT-RRWYKDVGLGFRTPKTAIEGSYIDKKCPFTG 66

Query:    64 TVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDH 123
              VSIRGRIL G   S KM+RTII+RR YLH+V KY RYEKRH N+ AH+SP FRV+EGD 
Sbjct:    67 MVSIRGRILTGRVVSTKMHRTIIIRREYLHYVPKYNRYEKRHKNLAAHVSPAFRVEEGDW 126

Query:   124 VIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAFT 157
             V +GQCRPLSKTVRFNVL+V+P   +G A KAF+
Sbjct:   127 VTVGQCRPLSKTVRFNVLRVLPR--TGKAVKAFS 158

GO:0005634 "nucleus" evidence=IEA

GO:0030686 "90S preribosome" evidence=IEA

GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0000028 "ribosomal small subunit assembly" evidence=IEA

GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA

UNIPROTKB|Q3T0V4 RPS11 "40S ribosomal protein S11" [Bos taurus (taxid:9913)]

 Score = 484 (175.4 bits), Expect = 3.8e-46, P = 3.8e-46
 Identities = 94/158 (59%), Positives = 116/158 (73%)

Query:     1 MAE-QTEKAFLKQPKVFLSSXXXXXXXXXXXXXNRFWKSIGLGFKTPREAIEGTYIDKKC 59
             MA+ QTE+A+ KQP +F +               R++K+IGLGFKTP+EAIEGTYIDKKC
Sbjct:     1 MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC 60

Query:    60 PFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFR-V 118
             PFTG VSIRGRIL+G     KM RTI++RR+YLH+++KY R+EKRH N+  H+SPCFR V
Sbjct:    61 PFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV 120

Query:   119 KEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAF 156
             + GD V +G+CRPLSKTVRFNVLKV  A    G KK F
Sbjct:   121 QIGDIVTVGECRPLSKTVRFNVLKVTKAA---GTKKQF 155

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS

GO:0019843 "rRNA binding" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|F2Z4N5 RPS11 "40S ribosomal protein S11" [Canis lupus familiaris (taxid:9615)]

 Score = 484 (175.4 bits), Expect = 3.8e-46, P = 3.8e-46
 Identities = 94/158 (59%), Positives = 116/158 (73%)

Query:     1 MAE-QTEKAFLKQPKVFLSSXXXXXXXXXXXXXNRFWKSIGLGFKTPREAIEGTYIDKKC 59
             MA+ QTE+A+ KQP +F +               R++K+IGLGFKTP+EAIEGTYIDKKC
Sbjct:     1 MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC 60

Query:    60 PFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFR-V 118
             PFTG VSIRGRIL+G     KM RTI++RR+YLH+++KY R+EKRH N+  H+SPCFR V
Sbjct:    61 PFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV 120

Query:   119 KEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAF 156
             + GD V +G+CRPLSKTVRFNVLKV  A    G KK F
Sbjct:   121 QIGDIVTVGECRPLSKTVRFNVLKVTKAA---GTKKQF 155

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|P62280 RPS11 "40S ribosomal protein S11" [Homo sapiens (taxid:9606)]

 Score = 484 (175.4 bits), Expect = 3.8e-46, P = 3.8e-46
 Identities = 94/158 (59%), Positives = 116/158 (73%)

Query:     1 MAE-QTEKAFLKQPKVFLSSXXXXXXXXXXXXXNRFWKSIGLGFKTPREAIEGTYIDKKC 59
             MA+ QTE+A+ KQP +F +               R++K+IGLGFKTP+EAIEGTYIDKKC
Sbjct:     1 MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC 60

Query:    60 PFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFR-V 118
             PFTG VSIRGRIL+G     KM RTI++RR+YLH+++KY R+EKRH N+  H+SPCFR V
Sbjct:    61 PFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV 120

Query:   119 KEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAF 156
             + GD V +G+CRPLSKTVRFNVLKV  A    G KK F
Sbjct:   121 QIGDIVTVGECRPLSKTVRFNVLKVTKAA---GTKKQF 155

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0019843 "rRNA binding" evidence=IEA

GO:0005840 "ribosome" evidence=NAS

GO:0006412 "translation" evidence=IC;NAS;TAS

GO:0022627 "cytosolic small ribosomal subunit" evidence=IDA

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006413 "translational initiation" evidence=TAS

GO:0006414 "translational elongation" evidence=TAS

GO:0006415 "translational termination" evidence=TAS

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0019058 "viral infectious cycle" evidence=TAS

GO:0019083 "viral transcription" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

UNIPROTKB|F2Z4Y8 RPS11 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 484 (175.4 bits), Expect = 3.8e-46, P = 3.8e-46
 Identities = 94/158 (59%), Positives = 116/158 (73%)

Query:     1 MAE-QTEKAFLKQPKVFLSSXXXXXXXXXXXXXNRFWKSIGLGFKTPREAIEGTYIDKKC 59
             MA+ QTE+A+ KQP +F +               R++K+IGLGFKTP+EAIEGTYIDKKC
Sbjct:     1 MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC 60

Query:    60 PFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFR-V 118
             PFTG VSIRGRIL+G     KM RTI++RR+YLH+++KY R+EKRH N+  H+SPCFR V
Sbjct:    61 PFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV 120

Query:   119 KEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAF 156
             + GD V +G+CRPLSKTVRFNVLKV  A    G KK F
Sbjct:   121 QIGDIVTVGECRPLSKTVRFNVLKVTKAA---GTKKQF 155

GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

MGI|MGI:1351329 Rps11 "ribosomal protein S11" [Mus musculus (taxid:10090)]

 Score = 484 (175.4 bits), Expect = 3.8e-46, P = 3.8e-46
 Identities = 94/158 (59%), Positives = 116/158 (73%)

Query:     1 MAE-QTEKAFLKQPKVFLSSXXXXXXXXXXXXXNRFWKSIGLGFKTPREAIEGTYIDKKC 59
             MA+ QTE+A+ KQP +F +               R++K+IGLGFKTP+EAIEGTYIDKKC
Sbjct:     1 MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC 60

Query:    60 PFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFR-V 118
             PFTG VSIRGRIL+G     KM RTI++RR+YLH+++KY R+EKRH N+  H+SPCFR V
Sbjct:    61 PFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV 120

Query:   119 KEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAF 156
             + GD V +G+CRPLSKTVRFNVLKV  A    G KK F
Sbjct:   121 QIGDIVTVGECRPLSKTVRFNVLKVTKAA---GTKKQF 155

GO:0003723 "RNA binding" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0019843 "rRNA binding" evidence=IEA

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISO

GO:0030529 "ribonucleoprotein complex" evidence=IEA

RGD|621026 Rps11 "ribosomal protein S11" [Rattus norvegicus (taxid:10116)]

 Score = 484 (175.4 bits), Expect = 3.8e-46, P = 3.8e-46
 Identities = 94/158 (59%), Positives = 116/158 (73%)

Query:     1 MAE-QTEKAFLKQPKVFLSSXXXXXXXXXXXXXNRFWKSIGLGFKTPREAIEGTYIDKKC 59
             MA+ QTE+A+ KQP +F +               R++K+IGLGFKTP+EAIEGTYIDKKC
Sbjct:     1 MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC 60

Query:    60 PFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFR-V 118
             PFTG VSIRGRIL+G     KM RTI++RR+YLH+++KY R+EKRH N+  H+SPCFR V
Sbjct:    61 PFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV 120

Query:   119 KEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAF 156
             + GD V +G+CRPLSKTVRFNVLKV  A    G KK F
Sbjct:   121 QIGDIVTVGECRPLSKTVRFNVLKVTKAA---GTKKQF 155

GO:0003674 "molecular_function" evidence=ND

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0019843 "rRNA binding" evidence=IEA

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISO;IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P61270	RS11_MACFA	No assigned EC number	0.6075	0.9622	0.9683	N/A	no
P42756	RS11_DUNTE	No assigned EC number	0.6875	0.9811	0.9936	N/A	no
O65569	RS112_ARATH	No assigned EC number	0.9119	1.0	1.0	no	no
P42733	RS113_ARATH	No assigned EC number	0.9119	1.0	1.0	yes	no
Q6XHX5	RS11_DROYA	No assigned EC number	0.6062	0.9308	0.9548	N/A	no
Q0E9B6	RS11_DROME	No assigned EC number	0.6062	0.9308	0.9548	yes	no
P41115	RS11_XENLA	No assigned EC number	0.6012	0.9622	0.9683	N/A	no
P62280	RS11_HUMAN	No assigned EC number	0.6075	0.9622	0.9683	yes	no
P62281	RS11_MOUSE	No assigned EC number	0.6075	0.9622	0.9683	yes	no
P62282	RS11_RAT	No assigned EC number	0.6075	0.9622	0.9683	yes	no
P0CX47	RS11A_YEAST	No assigned EC number	0.5833	0.9371	0.9551	yes	no
P25460	RS11_MAIZE	No assigned EC number	0.9493	0.9937	0.9937	N/A	no
P0CX48	RS11B_YEAST	No assigned EC number	0.5833	0.9371	0.9551	yes	no
P17093	RS11_SOYBN	No assigned EC number	0.9559	1.0	1.0	yes	no
Q292D0	RS11_DROPS	No assigned EC number	0.6139	0.9433	0.9677	yes	no
Q9M5M1	RS11_EUPES	No assigned EC number	0.9559	1.0	1.0	N/A	no
Q3T0V4	RS11_BOVIN	No assigned EC number	0.6075	0.9622	0.9683	yes	no
P52812	RS11_ANOGA	No assigned EC number	0.5849	0.9371	0.9738	yes	no
P16181	RS111_ARATH	No assigned EC number	0.9125	1.0	0.9937	no	no
Q9XSU4	RS11_CANFA	No assigned EC number	0.6075	0.9622	0.9683	yes	no
P79013	RS11_SCHPO	No assigned EC number	0.625	0.8553	0.8947	yes	no
Q54S90	RS11_DICDI	No assigned EC number	0.6369	0.9685	0.9935	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	159
PTZ00241	158	PTZ00241, PTZ00241, 40S ribosomal protein S11; Pro	3e-89
PRK08572	108	PRK08572, rps17p, 30S ribosomal protein S17P; Revi	1e-42
TIGR03630	102	TIGR03630, arch_S17P, archaeal ribosomal protein S	3e-41
pfam00366	69	pfam00366, Ribosomal_S17, Ribosomal protein S17	9e-32
COG0186	87	COG0186, RpsQ, Ribosomal protein S17 [Translation,	1e-28
TIGR03635	71	TIGR03635, S17_bact, 30S ribosomal protein S17	1e-08
PRK05610	84	PRK05610, rpsQ, 30S ribosomal protein S17; Reviewe	2e-08
CHL00142	84	CHL00142, rps17, ribosomal protein S17; Validated	4e-04

>gnl|CDD|240326 PTZ00241, PTZ00241, 40S ribosomal protein S11; Provisional

 Score =  256 bits (657), Expect = 3e-89
 Identities = 104/156 (66%), Positives = 116/156 (74%), Gaps = 2/156 (1%)

Query: 1   MAEQTEKAFLKQPKVFLSSKKAGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60
              QTE+AF KQ  VF +SK+  K K     G R+WK +GLGFKTP+EAIEG YIDKKCP
Sbjct: 2   ADVQTERAFQKQEGVFQNSKRLLKKK--TSKGVRYWKKVGLGFKTPKEAIEGKYIDKKCP 59

Query: 61  FTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTG VSIRGRIL G   S KM RTII+RR+YLH+VKKY RYEKRH NIP H SPCF VKE
Sbjct: 60  FTGNVSIRGRILRGVVISTKMKRTIIIRRDYLHYVKKYNRYEKRHKNIPVHCSPCFDVKE 119

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAF 156
           GD V++GQCRPLSKTVRFNVLKV      G  +K F
Sbjct: 120 GDIVVVGQCRPLSKTVRFNVLKVEKNEIIGNVRKQF 155

Length = 158

>gnl|CDD|236296 PRK08572, rps17p, 30S ribosomal protein S17P; Reviewed

 Score =  136 bits (345), Expect = 1e-42
 Identities = 54/108 (50%), Positives = 70/108 (64%), Gaps = 4/108 (3%)

Query: 37  KSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVK 96
           ++IGL  K P E  +    D  CPF GT+ +RG++L GT  S KM++T++V R YLH+V 
Sbjct: 1   RNIGLDVKPPEEECD----DPNCPFHGTLPVRGQVLEGTVVSDKMHKTVVVEREYLHYVP 56

Query: 97  KYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVI 144
           KY+RYEKR S I AH  PC   K GD V I +CRPLSKT  F V++  
Sbjct: 57  KYERYEKRRSRIHAHNPPCIDAKVGDKVKIAECRPLSKTKSFVVVEKK 104

Length = 108

>gnl|CDD|132669 TIGR03630, arch_S17P, archaeal ribosomal protein S17P

 Score =  133 bits (336), Expect = 3e-41
 Identities = 54/106 (50%), Positives = 68/106 (64%), Gaps = 4/106 (3%)

Query: 39  IGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKY 98
           IG+  K P         D KCPF G + +RG+IL G   S KMN+T++V R YL++ +KY
Sbjct: 1   IGIPVKPPERECN----DPKCPFHGHLKVRGQILEGVVVSDKMNKTVVVEREYLYYDRKY 56

Query: 99  QRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVI 144
           +RYE+R S I AH  PC  VKEGD VIIG+ RPLSKT  F VL  +
Sbjct: 57  ERYERRRSKIHAHNPPCIDVKEGDIVIIGETRPLSKTKSFVVLGKV 102

This model describes exclusively the archaeal ribosomal protein S17P. It excludes the homologous ribosomal protein S17 from bacteria, and is not intended for use on eukaryotic sequences, where some instances of ribosomal proteins S11 score above the trusted cutoff [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 102

>gnl|CDD|109426 pfam00366, Ribosomal_S17, Ribosomal protein S17

 Score =  108 bits (271), Expect = 9e-32
 Identities = 39/70 (55%), Positives = 45/70 (64%), Gaps = 1/70 (1%)

Query: 74  GTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLS 133
           G   S KM +TI+VR   L    KY +YEKR    PAH  PCFR K GD V IG+CRPLS
Sbjct: 1   GVVVSDKMEKTIVVRVERLVPHPKYGKYEKRTKKYPAHDPPCFR-KVGDVVKIGECRPLS 59

Query: 134 KTVRFNVLKV 143
           KT RF V++V
Sbjct: 60  KTKRFRVVRV 69

Length = 69

>gnl|CDD|223264 COG0186, RpsQ, Ribosomal protein S17 [Translation, ribosomal structure and biogenesis]

 Score =  100 bits (252), Expect = 1e-28
 Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 1/83 (1%)

Query: 62  TGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEG 121
            G + +RGR+L G   S KM++T++V      +  KY +Y +R     AH   C   K G
Sbjct: 1   HGKLRVRGRVLEGVVVSDKMDKTVVVEVERKVYHPKYGKYVRRSKKYHAH-DECNEAKVG 59

Query: 122 DHVIIGQCRPLSKTVRFNVLKVI 144
           D V I + RPLSKT RF V++++
Sbjct: 60  DIVRIAETRPLSKTKRFVVVEIV 82

Length = 87

>gnl|CDD|213841 TIGR03635, S17_bact, 30S ribosomal protein S17

 Score = 48.7 bits (117), Expect = 1e-08
 Identities = 27/73 (36%), Positives = 35/73 (47%), Gaps = 5/73 (6%)

Query: 70  RILAGTCHSAKMNRTIIVR--RNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIG 127
           + L G   S KM++TI+V   R   H    Y +  KR     AH       K GD V I 
Sbjct: 2   KTLQGVVVSDKMDKTIVVLVERRVKH--PLYGKIVKRTKKYHAH-DENNECKVGDVVRII 58

Query: 128 QCRPLSKTVRFNV 140
           + RPLSKT R+ +
Sbjct: 59  ETRPLSKTKRWRL 71

This model describes the bacterial ribosomal small subunit protein S17, while excluding cytosolic eukaryotic homologs and archaeal homologs. The model finds many, but not, chloroplast and mitochondrial counterparts to bacterial S17 [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 71

>gnl|CDD|235532 PRK05610, rpsQ, 30S ribosomal protein S17; Reviewed

 Score = 48.6 bits (117), Expect = 2e-08
 Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 5/77 (6%)

Query: 70  RILAGTCHSAKMNRTIIVR--RNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIG 127
           + L G   S KM++TI+V   R   H    Y +  KR     AH       K GD V I 
Sbjct: 7   KTLQGRVVSDKMDKTIVVLVERRVKH--PLYGKIVKRSKKYHAH-DENNEAKIGDVVRIM 63

Query: 128 QCRPLSKTVRFNVLKVI 144
           + RPLSKT R+ +++++
Sbjct: 64  ETRPLSKTKRWRLVEIV 80

Length = 84

>gnl|CDD|177064 CHL00142, rps17, ribosomal protein S17; Validated

 Score = 36.9 bits (86), Expect = 4e-04
 Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 15/83 (18%)

Query: 74  GTCHSAKMNRTIIVR-------RNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVII 126
           G   S KMN+TI+V          Y   + K ++Y   H       + C     GD V+I
Sbjct: 8   GIVVSNKMNKTIVVAVENRYKHPIYGKIITKTKKY-LVHD----EENEC---NIGDQVLI 59

Query: 127 GQCRPLSKTVRFNVLKVIPAGSS 149
            + RPLSKT R+ + +++   S 
Sbjct: 60  EETRPLSKTKRWILKEILSKSSL 82

Length = 84

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	159
PTZ00241	158	40S ribosomal protein S11; Provisional	100.0
KOG1728	156	consensus 40S ribosomal protein S11 [Translation,	100.0
PRK08572	108	rps17p 30S ribosomal protein S17P; Reviewed	100.0
TIGR03630	102	arch_S17P archaeal ribosomal protein S17P. This mo	100.0
COG0186	87	RpsQ Ribosomal protein S17 [Translation, ribosomal	100.0
CHL00142	84	rps17 ribosomal protein S17; Validated	100.0
PRK05610	84	rpsQ 30S ribosomal protein S17; Reviewed	100.0
TIGR03635	71	S17_bact 30S ribosomal protein S17. This model des	100.0
PF00366	69	Ribosomal_S17: Ribosomal protein S17; InterPro: IP	99.97
KOG1740	107	consensus Predicted mitochondrial/chloroplast ribo	99.94
KOG3447	150	consensus Mitochondrial/chloroplast ribosomal S17-	99.19
PF10915	238	DUF2709: Protein of unknown function (DUF2709); In	81.24

>PTZ00241 40S ribosomal protein S11; Provisional

Probab=100.00  E-value=1.8e-73  Score=453.06  Aligned_cols=157  Identities=66%  Similarity=1.076  Sum_probs=144.9

Q ss_pred             CchhhHHhhccCcceeecccccCCCCCCCCCCceeeeeecccccCChhhhcccccCCCCCceeeeeeeceEEEEEEEecC
Q 031480            1 MAEQTEKAFLKQPKVFLSSKKAGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAK   80 (159)
Q Consensus         1 m~~q~~~a~qkq~~i~~~~~~~~~~~~~~~~~~r~~~~igl~~~~P~~~~~~~yiD~kcPf~g~~sirg~il~G~VvS~K   80 (159)
                      |++|+|||||||++||+|+++.+.++  ..+.+||++||||||++|++||||+|||++|||||||||||++|+|+|+|+|
T Consensus         2 ~~~q~e~a~qkq~~i~~~~~~~~~~~--~~~~~r~~k~iGl~~~~P~~~~~~~yiD~kCPf~G~~~iRgril~G~VvS~K   79 (158)
T PTZ00241          2 ADVQTERAFQKQEGVFQNSKRLLKKK--TSKGVRYWKKVGLGFKTPKEAIEGKYIDKKCPFTGNVSIRGRILRGVVISTK   79 (158)
T ss_pred             ccccchhhhccCCceeeccccccccc--cccccchhhhcCCCCcCChhhhcccccCCCCCccceeeEcceEEEEEEEEcc
Confidence            35599999999999999999965332  2237899999999999999999999999999999999999999999999999


Q ss_pred             CCCeEEEEEeEEEeeeeeeeEEeeeeeEEEEcCCCCCCCCCCEEEEeeeecCCCeeeEEEEEEeecCCCCCcccccccC
Q 031480           81 MNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAFTAM  159 (159)
Q Consensus        81 M~KTvvV~v~~~~~~pKY~K~~kr~kk~~vHd~p~~~~kvGD~V~I~ecRPLSKtK~f~V~~Ii~~~~~~~~~k~f~~f  159 (159)
                      |+|||+|+++|++|||+|+||++|+++|+|||||||+|++||+|+|+|||||||||+|+|++|++++..++.+|||++|
T Consensus        80 M~KTIVV~ve~~~~h~kY~K~~kr~kk~~aHd~~~~~~kvGD~V~I~EcRPLSKTKrf~Vv~V~~~~~~~~~~k~f~~f  158 (158)
T PTZ00241         80 MKRTIIIRRDYLHYVKKYNRYEKRHKNIPVHCSPCFDVKEGDIVVVGQCRPLSKTVRFNVLKVEKNEIIGNVRKQFVLF  158 (158)
T ss_pred             CCccEEEEEEEEEecCccceEEEeeecEEEeCCccCCCCCCCEEEEEEcCCCCCceeEEEEEEEecccccccccccccC
Confidence            9999999999999999999999999999999989999999999999999999999999999999975322259999987

>KOG1728 consensus 40S ribosomal protein S11 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=2.3e-70  Score=429.11  Aligned_cols=154  Identities=71%  Similarity=1.179  Sum_probs=147.9

Q ss_pred             CchhhHHhhccCcceeecccccCCCCCCCCCCceeeeeecccccCChhhhcccccCCCCCceeeeeeeceEEEEEEEecC
Q 031480            1 MAEQTEKAFLKQPKVFLSSKKAGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAK   80 (159)
Q Consensus         1 m~~q~~~a~qkq~~i~~~~~~~~~~~~~~~~~~r~~~~igl~~~~P~~~~~~~yiD~kcPf~g~~sirg~il~G~VvS~K   80 (159)
                      |++|+|+|||+|++||+|.|..  +...+++.+||++|||||||+|+||++|+|||+||||||+|||||+||+|+|+++|
T Consensus         2 ~~vq~eraF~kq~~v~~~~k~~--~~~~~k~~~r~~~~iglGFKtP~eAiegtYIDKKCPftG~vsIRGril~G~V~k~K   79 (156)
T KOG1728|consen    2 MAVQTERAFQKQPGVFLNAKAS--GKRTSKKGKRRYKNIGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRILTGTVVKMK   79 (156)
T ss_pred             cchhhhHHhhhCccccccCccc--ccccccccchhhhhcCcccCChHHhhcceeecccCCcccceeEeeEEEeeEEeeec
Confidence            6789999999999999999987  35578899999999999999999999999999999999999999999999999999


Q ss_pred             CCCeEEEEEeEEEeeeeeeeEEeeeeeEEEEcCCCCC-CCCCCEEEEeeeecCCCeeeEEEEEEeecCCCCCcccccccC
Q 031480           81 MNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFR-VKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAFTAM  159 (159)
Q Consensus        81 M~KTvvV~v~~~~~~pKY~K~~kr~kk~~vHd~p~~~-~kvGD~V~I~ecRPLSKtK~f~V~~Ii~~~~~~~~~k~f~~f  159 (159)
                      |++||||++|||||.+||++|++||+|++||.|||++ +++||+|+|+||||||||+||+|+++++.   ++.+|+|.+|
T Consensus        80 m~rTIvvrrdYlHy~~KY~ryekrHkN~svh~SPcFrdi~~gDiVtvGecrPLSKtvrfnVLkv~k~---~g~~k~~~k~  156 (156)
T KOG1728|consen   80 MQRTIVVRRDYLHYIKKYNRYEKRHKNMSVHVSPCFRDIQEGDIVTVGECRPLSKTVRFNVLKVIKA---AGSKKQFKKF  156 (156)
T ss_pred             eeEEEEEEhhhhhHhHHhhHHHHhccCCccccchhhhccccCCEEEEeecccccceEEEEEEEEeec---CCCccccccC
Confidence            9999999999999999999999999999999999997 99999999999999999999999999999   4579999987

>PRK08572 rps17p 30S ribosomal protein S17P; Reviewed

Probab=100.00  E-value=2e-51  Score=310.06  Aligned_cols=107  Identities=50%  Similarity=0.915  Sum_probs=104.2

Q ss_pred             eeecccccCChhhhcccccCCCCCceeeeeeeceEEEEEEEecCCCCeEEEEEeEEEeeeeeeeEEeeeeeEEEEcCCCC
Q 031480           37 KSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCF  116 (159)
Q Consensus        37 ~~igl~~~~P~~~~~~~yiD~kcPf~g~~sirg~il~G~VvS~KM~KTvvV~v~~~~~~pKY~K~~kr~kk~~vHd~p~~  116 (159)
                      +||||||++|+++||    |++|||||+|+|||++|+|+|+|++|+|||+|++++++|||+|+|+++++++|+|||++||
T Consensus         1 ~~ig~~~~~p~~~~~----d~~cP~~g~l~irgk~l~G~VvS~Km~KTvvV~v~r~~~hpkY~K~i~r~kky~aHDe~cn   76 (108)
T PRK08572          1 RNIGLDVKPPEEECD----DPNCPFHGTLPVRGQVLEGTVVSDKMHKTVVVEREYLHYVPKYERYEKRRSRIHAHNPPCI   76 (108)
T ss_pred             CccccCCCCCccccc----CCCCCCcceeeeeeEEEEEEEEecCCCceEEEEEEEEEecCCccEEEEEeeeEEEECCCCC
Confidence            589999999999999    9999999999999999999999999999999999999999999999999999999997789


Q ss_pred             CCCCCCEEEEeeeecCCCeeeEEEEEEeecC
Q 031480          117 RVKEGDHVIIGQCRPLSKTVRFNVLKVIPAG  147 (159)
Q Consensus       117 ~~kvGD~V~I~ecRPLSKtK~f~V~~Ii~~~  147 (159)
                      +|++||+|+|+|||||||+|+|+|++|++++
T Consensus        77 ~~kvGD~V~I~E~RPiSKtK~w~v~~i~~~~  107 (108)
T PRK08572         77 DAKVGDKVKIAECRPLSKTKSFVVVEKKERA  107 (108)
T ss_pred             CCCCCCEEEEEEcCCCCCceEEEEEEEEEcC
Confidence            9999999999999999999999999999874

>TIGR03630 arch_S17P archaeal ribosomal protein S17P

Probab=100.00  E-value=8.4e-49  Score=293.24  Aligned_cols=102  Identities=53%  Similarity=0.926  Sum_probs=98.3

Q ss_pred             ecccccCChhhhcccccCCCCCceeeeeeeceEEEEEEEecCCCCeEEEEEeEEEeeeeeeeEEeeeeeEEEEcCCCCCC
Q 031480           39 IGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRV  118 (159)
Q Consensus        39 igl~~~~P~~~~~~~yiD~kcPf~g~~sirg~il~G~VvS~KM~KTvvV~v~~~~~~pKY~K~~kr~kk~~vHd~p~~~~  118 (159)
                      |||++++|+++|+    |++|||||+|+|||++|+|+|+|+||+|||+|+++++++||+|+|+++++++|+|||++||+|
T Consensus         1 ig~~~~~p~~~~~----d~~cpf~g~l~irgk~l~G~VvS~Km~KTivV~V~r~~~hpkY~K~i~r~kky~aHDe~cn~~   76 (102)
T TIGR03630         1 IGIPVKPPERECN----DPKCPFHGHLKVRGQILEGVVVSDKMNKTVVVEREYLYYDRKYERYERRRSKIHAHNPPCIDV   76 (102)
T ss_pred             CCcccCCCCcccc----CCCCCccceeeeeeEEEEEEEEecCCCceEEEEEEEEEecCCccEEEEEeeeEEEECCCCCCC
Confidence            7999999997666    999999999999999999999999999999999999999999999999999999999777999


Q ss_pred             CCCCEEEEeeeecCCCeeeEEEEEEe
Q 031480          119 KEGDHVIIGQCRPLSKTVRFNVLKVI  144 (159)
Q Consensus       119 kvGD~V~I~ecRPLSKtK~f~V~~Ii  144 (159)
                      ++||+|+|+|||||||+|+|+|++|+
T Consensus        77 kvGD~V~I~E~RPlSKtK~w~vv~i~  102 (102)
T TIGR03630        77 KEGDIVIIGETRPLSKTKSFVVLGKV  102 (102)
T ss_pred             CCCCEEEEEEcCCCCCceEEEEEEeC
Confidence            99999999999999999999999974

This model describes exclusively the archaeal ribosomal protein S17P. It excludes homologous ribosomal proteins S11 from eukaryotes and S17 from bacteria.

>COG0186 RpsQ Ribosomal protein S17 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.1e-38  Score=232.79  Aligned_cols=85  Identities=38%  Similarity=0.629  Sum_probs=83.2

Q ss_pred             eeeeeeeceEEEEEEEecCCCCeEEEEEeEEEeeeeeeeEEeeeeeEEEEcCCCCCCCCCCEEEEeeeecCCCeeeEEEE
Q 031480           62 TGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVL  141 (159)
Q Consensus        62 ~g~~sirg~il~G~VvS~KM~KTvvV~v~~~~~~pKY~K~~kr~kk~~vHd~p~~~~kvGD~V~I~ecRPLSKtK~f~V~  141 (159)
                      ||+++++|++|+|+|+|+||+|||+|++++.+|||+|+||++++++|+||| |||+|++||+|+|+|||||||||+|+|+
T Consensus         1 ~~~~~~~~k~l~G~VvS~Km~KTvvV~ve~~~~hp~Y~K~v~r~kK~~aHd-e~~~~k~GD~V~I~EtRPLSKtK~~~vv   79 (87)
T COG0186           1 HGKLRVRGRVLEGVVVSDKMDKTVVVEVERKVYHPKYGKYVRRSKKYHAHD-ECNEAKVGDIVRIAETRPLSKTKRFVVV   79 (87)
T ss_pred             CCccccCceEEEEEEEEccCceeEEEEEEEEEecccceEEEEEEeeeEeec-ccccCCCCCEEEEEEccccCCcceEEEE
Confidence            689999999999999999999999999999999999999999999999999 9999999999999999999999999999


Q ss_pred             EEeecC
Q 031480          142 KVIPAG  147 (159)
Q Consensus       142 ~Ii~~~  147 (159)
                      +|++++
T Consensus        80 ~i~~~a   85 (87)
T COG0186          80 EIVEKA   85 (87)
T ss_pred             EEeeec
Confidence            999874

>CHL00142 rps17 ribosomal protein S17; Validated

Probab=100.00  E-value=4.4e-34  Score=207.34  Aligned_cols=79  Identities=28%  Similarity=0.307  Sum_probs=76.1

Q ss_pred             ceEEEEEEEecCCCCeEEEEEeEEEeeeeeeeEEeeeeeEEEEcCCCCCCCCCCEEEEeeeecCCCeeeEEEEEEeecCC
Q 031480           69 GRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGS  148 (159)
Q Consensus        69 g~il~G~VvS~KM~KTvvV~v~~~~~~pKY~K~~kr~kk~~vHd~p~~~~kvGD~V~I~ecRPLSKtK~f~V~~Ii~~~~  148 (159)
                      .+.|.|+|+|++|+|||+|++++++|||+|+|+++++++|+||| |+|+|++||+|+|+|||||||||+|+|++|++++.
T Consensus         3 ~~~~~G~Vvs~km~KTivV~v~r~~~h~kY~K~~~r~kk~~aHD-e~n~~~~GD~V~I~e~RPlSKtK~~~v~~i~~~~~   81 (84)
T CHL00142          3 VKEKIGIVVSNKMNKTIVVAVENRYKHPIYGKIITKTKKYLVHD-EENECNIGDQVLIEETRPLSKTKRWILKEILSKSS   81 (84)
T ss_pred             ceEEEEEEEeCCCCceEEEEEEEEEEcCcccEEEEeeEEEEEeC-CCCCCCCCCEEEEEEcCCCCCcEEEEEEEEEEeee
Confidence            47899999999999999999999999999999999999999999 89999999999999999999999999999998854

>PRK05610 rpsQ 30S ribosomal protein S17; Reviewed

Probab=100.00  E-value=4.9e-34  Score=206.89  Aligned_cols=78  Identities=32%  Similarity=0.373  Sum_probs=75.6

Q ss_pred             ceEEEEEEEecCCCCeEEEEEeEEEeeeeeeeEEeeeeeEEEEcCCCCCCCCCCEEEEeeeecCCCeeeEEEEEEeecC
Q 031480           69 GRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAG  147 (159)
Q Consensus        69 g~il~G~VvS~KM~KTvvV~v~~~~~~pKY~K~~kr~kk~~vHd~p~~~~kvGD~V~I~ecRPLSKtK~f~V~~Ii~~~  147 (159)
                      +++|.|+|+|++|+|||+|++++++|||+|+||++++++|+||| |+|+|++||+|+|+|||||||+|+|+|++|++++
T Consensus         6 ~~~l~G~Vvs~km~KTvvV~v~r~~~h~kY~K~~~r~kk~~aHD-~~n~~k~GD~V~I~e~rPlSK~K~~~v~~i~~~~   83 (84)
T PRK05610          6 RKTLQGRVVSDKMDKTIVVLVERRVKHPLYGKIVKRSKKYHAHD-ENNEAKIGDVVRIMETRPLSKTKRWRLVEIVEKA   83 (84)
T ss_pred             CCEEEEEEEcccCCceEEEEEEEEEEeccccEEEEcceEEEEEC-CCCCCCCCCEEEEEEcccCCCCEEEEEEEEEecc
Confidence            78999999999999999999999999999999999999999999 7889999999999999999999999999999864

>TIGR03635 S17_bact 30S ribosomal protein S17

Probab=100.00  E-value=6e-33  Score=195.61  Aligned_cols=70  Identities=36%  Similarity=0.377  Sum_probs=68.1

Q ss_pred             eEEEEEEEecCCCCeEEEEEeEEEeeeeeeeEEeeeeeEEEEcCCCCCCCCCCEEEEeeeecCCCeeeEEE
Q 031480           70 RILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNV  140 (159)
Q Consensus        70 ~il~G~VvS~KM~KTvvV~v~~~~~~pKY~K~~kr~kk~~vHd~p~~~~kvGD~V~I~ecRPLSKtK~f~V  140 (159)
                      ++|.|+|+|++|+|||+|++++++|||+|+|+++++++|+||| |+|+|++||+|+|+|||||||+|+|+|
T Consensus         2 ~~l~G~Vvs~km~KTvvV~v~~~~~h~ky~k~~~r~kk~~aHD-~~~~~k~GD~V~I~ecrPlSK~K~~~~   71 (71)
T TIGR03635         2 KTLQGVVVSDKMDKTIVVLVERRVKHPLYGKIVKRTKKYHAHD-ENNECKVGDVVRIIETRPLSKTKRWRL   71 (71)
T ss_pred             eEEEEEEEcccCCceEEEEEEEEEEeccccEEEEccEEEEEEC-CCCCCCCCCEEEEEEcCCcCCceEeEC
Confidence            6899999999999999999999999999999999999999999 788999999999999999999999985

This model describes the bacterial ribosomal small subunit protein S17, while excluding cytosolic eukaryotic homologs and archaeal homologs. The model finds many, but not, chloroplast and mitochondrial counterparts to bacterial S17.

>PF00366 Ribosomal_S17: Ribosomal protein S17; InterPro: IPR000266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=99.97  E-value=6.1e-31  Score=184.08  Aligned_cols=69  Identities=43%  Similarity=0.632  Sum_probs=66.4

Q ss_pred             EEEEecCCCCeEEEEEeEEEeeeeeeeEEeeeeeEEEEcCCCCCCCCCCEEEEeeeecCCCeeeEEEEEE
Q 031480           74 GTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKV  143 (159)
Q Consensus        74 G~VvS~KM~KTvvV~v~~~~~~pKY~K~~kr~kk~~vHd~p~~~~kvGD~V~I~ecRPLSKtK~f~V~~I  143 (159)
                      |+|+|++|+|||+|++++++|||+|+|+++++++|+||| |.+.|++||+|+|.|||||||+|+|+|++|
T Consensus         1 G~Vvs~km~KTv~V~v~~~~~~~ky~K~~~~~kk~~aHD-~~~~~~vGD~V~I~e~rPiSk~K~~~v~~v   69 (69)
T PF00366_consen    1 GVVVSDKMDKTVVVRVERLVYHPKYKKYIKRTKKYMAHD-ENNICKVGDKVRIRECRPISKTKRFVVVEV   69 (69)
T ss_dssp             EEEEEEESTTEEEEEEEEEEEETTTEEEEEEEEEEEEE--TTSSSTTTSEEEEEEEEEEETTEEEEEEEE
T ss_pred             CEEEEcCCCCeEEEEEEEEEEcceEeeccCccccEEEeC-CccCCCCCCEEEEEeeeccCCcEeEEEEEC
Confidence            899999999999999999999999999999999999999 788899999999999999999999999986

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The ribosomal proteins catalyse ribosome assembly and stabilise the rRNA, tuning the structure of the ribosome for optimal function. Evidence suggests that, in prokaryotes, the peptidyl transferase reaction is performed by the large subunit 23S rRNA, whereas proteins probably have a greater role in eukaryotic ribosomes. Most of the proteins lie close to, or on the surface of, the 30S subunit, arranged peripherally around the rRNA []. The small subunit ribosomal proteins can be categorised as primary binding proteins, which bind directly and independently to 16S rRNA; secondary binding proteins, which display no specific affinity for 16S rRNA, but its assembly is contingent upon the presence of one or more primary binding proteins; and tertiary binding proteins, which require the presence of one or more secondary binding proteins and sometimes other tertiary binding proteins. The small ribosomal subunit protein S17 is known to bind specifically to the 5' end of 16S ribosomal RNA in Escherichia coli (primary rRNA binding protein), and is thought to be involved in the recognition of termination codons. Experimental evidence [] has revealed that S17 has virtually no groups exposed on the ribosomal surface.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2YKR_Q 2VHP_Q 3BBN_Q 2QAL_Q 3OAR_Q 1VS5_Q 3KC4_Q 2AW7_Q 3E1C_J 2AVY_Q ....

>KOG1740 consensus Predicted mitochondrial/chloroplast ribosomal protein S17 [Translation, ribosomal structure and biogenesis]

Probab=99.94  E-value=2.9e-28  Score=182.44  Aligned_cols=78  Identities=38%  Similarity=0.498  Sum_probs=74.5

Q ss_pred             ceEEEEEEEecCCCCeEEEEEeEEEeeeeeeeEEeeeeeEEEEcCCCCCCCCCCEEEEeeeecCCCeeeEEEEEEeecC
Q 031480           69 GRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAG  147 (159)
Q Consensus        69 g~il~G~VvS~KM~KTvvV~v~~~~~~pKY~K~~kr~kk~~vHd~p~~~~kvGD~V~I~ecRPLSKtK~f~V~~Ii~~~  147 (159)
                      .+-+.|+|+|.+|+||++|+|+++.+||+|+||++++++|+||| |.+.|++||.|+|..||||||||+|.+.+|++++
T Consensus         2 m~~~vg~VvS~kmqKTv~V~V~rl~~n~~ynryv~~~~kymahD-~~n~cnvGD~VrlepsRPlSk~K~f~i~eII~~a   79 (107)
T KOG1740|consen    2 MKNVVGTVVSNKMQKTVKVRVDRLFFNPKYNRYVKRTSKYMAHD-DKNQCNVGDRVRLEPSRPLSKTKHFIIAEIIKKA   79 (107)
T ss_pred             CccceeeeeecccCceeEEEeeeccccHHHHHHHHHhhheeecC-ccccccccceEEeccCCcccccceeehHHHHHHH
Confidence            34688999999999999999999999999999999999999999 8999999999999999999999999999999874

>KOG3447 consensus Mitochondrial/chloroplast ribosomal S17-like protein [Translation, ribosomal structure and biogenesis]

Probab=99.19  E-value=3.6e-12  Score=100.38  Aligned_cols=82  Identities=24%  Similarity=0.271  Sum_probs=76.0

Q ss_pred             eeeeeceEEEEEEEecCCCCeEEEEEeEEEeeeeeeeEEeeeeeEEEEcCCCCCCCCCCEEEEeee-ecCCCeeeEEEEE
Q 031480           64 TVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQC-RPLSKTVRFNVLK  142 (159)
Q Consensus        64 ~~sirg~il~G~VvS~KM~KTvvV~v~~~~~~pKY~K~~kr~kk~~vHd~p~~~~kvGD~V~I~ec-RPLSKtK~f~V~~  142 (159)
                      .-|+++++|.|.|+-.+|++|+.|++.++.++|..++|+.+++.|.||| +...|++||+|.|.+- -|+.+.+++.|.+
T Consensus         5 ~~s~~~~~lmGk~ig~~~q~~akVR~~r~eld~yL~kYf~k~~~yfAhD-~~~~c~vGDtVLir~lp~r~t~~V~H~v~~   83 (150)
T KOG3447|consen    5 KSSVHAQWLMGKVIGTKMQKTAKVRVTRLELDPYLLKYFNKRKTYFAHD-ALQQCTVGDTVLIRALPVRRTKHVKHEVAE   83 (150)
T ss_pred             EeecccEEEEeeeeeccccccceeeeehhhcCHHHHHHhccccceeecc-hhhccccCCEEEEecCCcchhhhhhhhhHh
Confidence            3589999999999999999999999999999999999999999999999 8999999999999995 6778888999988


Q ss_pred             Eeec
Q 031480          143 VIPA  146 (159)
Q Consensus       143 Ii~~  146 (159)
                      |+-+
T Consensus        84 VVfk   87 (150)
T KOG3447|consen   84 VVFK   87 (150)
T ss_pred             heee
Confidence            8765

>PF10915 DUF2709: Protein of unknown function (DUF2709); InterPro: IPR024484 Members of this family appear restricted to Chlamydiales

Probab=81.24  E-value=0.77  Score=39.02  Aligned_cols=58  Identities=29%  Similarity=0.337  Sum_probs=35.0

Q ss_pred             hHHhhccCcceeecccccCCCC-------CCCCCCceeeeeecccccCChhhh--cccccCCCCCceeeee
Q 031480            5 TEKAFLKQPKVFLSSKKAGKGK-------RPGKGGNRFWKSIGLGFKTPREAI--EGTYIDKKCPFTGTVS   66 (159)
Q Consensus         5 ~~~a~qkq~~i~~~~~~~~~~~-------~~~~~~~r~~~~igl~~~~P~~~~--~~~yiD~kcPf~g~~s   66 (159)
                      -|.+|+-||.+|...|-.-+..       ...+|.+|=. .|-+++-.|+--.  .--||   |||||.|.
T Consensus        31 lE~k~~l~PVlF~rdK~I~qs~e~ai~~lE~e~KlWret-eI~I~~g~p~VNE~TkkIYI---CPFTGKVF   97 (238)
T PF10915_consen   31 LEQKFNLQPVLFVRDKIIFQSAEDAIRILEEEGKLWRET-EIKIQSGKPSVNEQTKKIYI---CPFTGKVF   97 (238)
T ss_pred             HHHhcCCCceeeecchhhccCHHHHHHHHHHhcchheee-eEEEecCCcccccccceEEE---cCCcCccc
Confidence            5889999998888776332110       0123433332 5777777775322  22377   99999774

Their function is unknown.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	159
3iz6_P	161	Localization Of The Small Subunit Ribosomal Protein		9e-73
2xzm_Q	157	Crystal Structure Of The Eukaryotic 40s Ribosomal S		7e-52
2zkq_q	158	Structure Of A Mammalian Ribosomal 40s Subunit With		8e-50
3izb_P	156	Localization Of The Small Subunit Ribosomal Protein		5e-48
3zey_E	174	High-resolution Cryo-electron Microscopy Structure		1e-45
3jyv_Q	80	Structure Of The 40s Rrna And Proteins And PE TRNA		3e-27
1s1h_Q	76	Structure Of The Ribosomal 80s-Eef2-Sordarin Comple		8e-26
3j20_R	113	Promiscuous Behavior Of Proteins In Archaeal Riboso		2e-18
1i94_Q	104	Crystal Structures Of The Small Ribosomal Subunit W		5e-05
2j00_Q	105	Structure Of The Thermus Thermophilus 70s Ribosome		9e-05
1j5e_Q	104	Structure Of The Thermus Thermophilus 30s Ribosomal		9e-05
1fjg_Q	105	Structure Of The Thermus Thermophilus 30s Ribosomal		9e-05
3fic_Q	100	T. Thermophilus 70s Ribosome In Complex With Mrna,		1e-04
3mr8_Q	99	Recognition Of The Amber Stop Codon By Release Fact		1e-04

>pdb|3IZ6|P Chain P, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 161

Iteration: 1
 Score =  268 bits (685), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 131/146 (89%), Positives = 133/146 (91%)
Query: 1   MAEQTEKAFLKQPKVFLSSXXXXXXXXXXXXXNRFWKSIGLGFKTPREAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLSS             NRFWKSIGLGFKTPREAIEGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKKPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60
Query: 61  FTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTGTVSIRGRI+AGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAH+SPCFRVKE
Sbjct: 61  FTGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHVSPCFRVKE 120
Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPA 146
           GDHVIIGQCRPLSKTVRFNVLKVIPA
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPA 146

>pdb|2XZM|Q Chain Q, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 157

Iteration: 1
 Score =  199 bits (505), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 92/156 (58%), Positives = 115/156 (73%), Gaps = 2/156 (1%)
Query: 1   MAEQTEKAFLKQPKVFLSSXXXXXXXXXXXXXNRFWKSIGLGFKTPREAIEGTYIDKKCP 60
           M  Q ++A+ KQ  VFL+S              R++K+IGLGFKTP+EAIEGTY+DKKCP
Sbjct: 1   MDTQIQRAYQKQDGVFLNSKKLLAKKTSAGV--RYYKNIGLGFKTPKEAIEGTYVDKKCP 58
Query: 61  FTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FT  +SIRG+I+ G   S KMNRT+I+RR+YLH+V+KY RYEKRH NIP HISPCF VKE
Sbjct: 59  FTSNLSIRGKIIKGLVISTKMNRTVIIRRDYLHYVRKYNRYEKRHRNIPVHISPCFSVKE 118
Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAF 156
           GD ++ GQCRP+SKTVRFN L+V+P    G  +K F
Sbjct: 119 GDILVAGQCRPISKTVRFNALQVVPNEIIGSVRKQF 154

>pdb|2ZKQ|QQ Chain q, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 158

Iteration: 1
 Score =  192 bits (487), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 94/158 (59%), Positives = 116/158 (73%), Gaps = 5/158 (3%)
Query: 1   MAE-QTEKAFLKQPKVFLSSXXXXXXXXXXXXXNRFWKSIGLGFKTPREAIEGTYIDKKC 59
           MA+ QTE+A+ KQP +F +               R++K+IGLGFKTP+EAIEGTYIDKKC
Sbjct: 1   MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC 60
Query: 60  PFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFR-V 118
           PFTG VSIRGRIL+G     KM RTI++RR+YLH+++KY R+EKRH N+  H+SPCFR V
Sbjct: 61  PFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV 120
Query: 119 KEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAF 156
           + GD V +G+CRPLSKTVRFNVLKV  A    G KK F
Sbjct: 121 QIGDIVTVGECRPLSKTVRFNVLKVTKA---AGTKKQF 155

>pdb|3IZB|P Chain P, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 156

Iteration: 1
 Score =  186 bits (472), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 89/156 (57%), Positives = 114/156 (73%), Gaps = 7/156 (4%)
Query: 1   MAEQTEKAFLKQPKVFLSSXXXXXXXXXXXXXNRFWKSIGLGFKTPREAIEGTYIDKKCP 60
           +  Q+E+AF KQP +F +               R++K+ GLGFKTP+ AIEG+YIDKKCP
Sbjct: 5   LTVQSERAFQKQPHIFNNPKVKTSKRT-----KRWYKNAGLGFKTPKTAIEGSYIDKKCP 59
Query: 61  FTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTG VSIRG+IL GT  S KM+RTI++RR YLH++ KY RYEKRH N+P H+SP FRV+ 
Sbjct: 60  FTGLVSIRGKILTGTVVSTKMHRTIVIRRAYLHYIPKYNRYEKRHKNVPVHVSPAFRVQV 119
Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAF 156
           GD V +GQCRP+SKTVRFNV+KV  + ++G A K F
Sbjct: 120 GDIVTVGQCRPISKTVRFNVVKV--SAAAGKANKQF 153

>pdb|3ZEY|E Chain E, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 174

Iteration: 1
 Score =  178 bits (451), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 83/157 (52%), Positives = 105/157 (66%)
Query: 1   MAEQTEKAFLKQPKVFLSSXXXXXXXXXXXXXNRFWKSIGLGFKTPREAIEGTYIDKKCP 60
           +  Q EKA+ +Q  V  +               R+ K IGLGF TP+ AI G YID+KCP
Sbjct: 16  LTVQHEKAYQRQTAVNENIRTASKKHVNRSGHIRYSKKIGLGFATPKAAINGKYIDRKCP 75
Query: 61  FTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FT  VSIRGRIL G  HS KM R+I++RRNYLHF++KYQRY+KRH NI  H SPCF  K 
Sbjct: 76  FTSNVSIRGRILRGVVHSTKMRRSIVIRRNYLHFIRKYQRYQKRHRNITVHCSPCFDPKP 135
Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAFT 157
           GD V++GQCRPLSKT+R+NVL+V+   ++    K F+
Sbjct: 136 GDEVVVGQCRPLSKTIRYNVLQVVSKSAADKMGKKFS 172

>pdb|3JYV|Q Chain Q, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 80

Iteration: 1
 Score =  117 bits (293), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 52/80 (65%), Positives = 64/80 (80%)
Query: 68  RGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIG 127
           RG+IL GT  S KM+RTI++RR YLH++ KY RYEKRH N+P H+SP FRV+ GD V +G
Sbjct: 1   RGKILTGTVVSTKMHRTIVIRRAYLHYIPKYNRYEKRHKNVPVHVSPAFRVQVGDIVTVG 60
Query: 128 QCRPLSKTVRFNVLKVIPAG 147
           QCRP+SKTVRFNV+KV  A 
Sbjct: 61  QCRPISKTVRFNVVKVSAAA 80

>pdb|1S1H|Q Chain Q, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1h, Contains 40s Subunit. The 60s Ribosomal Subunit Is In File 1s1i Length = 76

Iteration: 1
 Score =  112 bits (280), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 49/74 (66%), Positives = 61/74 (82%)
Query: 70  RILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQC 129
           +IL GT  S KM+RTI++RR YLH++ KY RYEKRH N+P H+SP FRV+ GD V +GQC
Sbjct: 1   KILTGTVVSTKMHRTIVIRRAYLHYIPKYNRYEKRHKNVPVHVSPAFRVQVGDIVTVGQC 60
Query: 130 RPLSKTVRFNVLKV 143
           RP+SKTVRFNV+KV
Sbjct: 61  RPISKTVRFNVVKV 74

>pdb|3J20|R Chain R, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (30s Ribosomal Subunit) Length = 113

Iteration: 1
 Score = 88.6 bits (218), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 46/108 (42%), Positives = 61/108 (56%), Gaps = 4/108 (3%)
Query: 37  KSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVK 96
           + IGL  + P E  +    D KCP+ G + I GR+  G   S K  +T+ V R Y  ++ 
Sbjct: 3   RDIGLRVQPPAEKCD----DPKCPWHGNLKIHGRVFEGIVVSDKPRKTVTVERQYYFYLN 58
Query: 97  KYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVI 144
           KY+RYE R S I AH  PC   K GD V+I + RPLSKT  F V+ V+
Sbjct: 59  KYERYELRRSKIHAHNPPCINAKVGDKVLIAETRPLSKTKHFVVVAVL 106

>pdb|1I94|Q Chain Q, Crystal Structures Of The Small Ribosomal Subunit With Tetracycline, Edeine And If3 Length = 104

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 70  RILAGTCHSAKMNRTI--IVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIG 127
           ++L G   S KM +T+  +V R + H +  Y +  KR     AH  P  R K GD V I 
Sbjct: 3   KVLTGVVVSDKMQKTVTVLVERQFPHPL--YGKVIKRSKKYLAH-DPEERYKVGDVVEII 59
Query: 128 QCRPLSKTVRFNVLKVIPAG 147
           + RP+SK  RF VL+++  G
Sbjct: 60  EARPISKRKRFRVLRLVEEG 79

>pdb|2J00|Q Chain Q, Structure Of The Thermus Thermophilus 70s Ribosome Complexed With Mrna, Trna And Paromomycin (Part 1 Of 4). This File Contains The 30s Subunit, Mrna, A-, P- And E-Site Trnas And Paromomycin For Molecule I. Length = 105

Iteration: 1
 Score = 42.7 bits (99), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 5/80 (6%)
Query: 70  RILAGTCHSAKMNRTI--IVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIG 127
           ++L G   S KM +T+  +V R + H +  Y +  KR     AH  P  + K GD V I 
Sbjct: 4   KVLTGVVVSDKMQKTVTVLVERQFPHPL--YGKVIKRSKKYLAH-DPEEKYKLGDVVEII 60
Query: 128 QCRPLSKTVRFNVLKVIPAG 147
           + RP+SK  RF VL+++ +G
Sbjct: 61  ESRPISKRKRFRVLRLVESG 80

>pdb|1J5E|Q Chain Q, Structure Of The Thermus Thermophilus 30s Ribosomal Subunit Length = 104

Iteration: 1
 Score = 42.7 bits (99), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 5/80 (6%)
Query: 70  RILAGTCHSAKMNRTI--IVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIG 127
           ++L G   S KM +T+  +V R + H +  Y +  KR     AH  P  + K GD V I 
Sbjct: 3   KVLTGVVVSDKMQKTVTVLVERQFPHPL--YGKVIKRSKKYLAH-DPEEKYKLGDVVEII 59
Query: 128 QCRPLSKTVRFNVLKVIPAG 147
           + RP+SK  RF VL+++ +G
Sbjct: 60  ESRPISKRKRFRVLRLVESG 79

>pdb|1FJG|Q Chain Q, Structure Of The Thermus Thermophilus 30s Ribosomal Subunit In Complex With The Antibiotics Streptomycin, Spectinomycin, And Paromomycin Length = 105

Iteration: 1
 Score = 42.7 bits (99), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 5/80 (6%)
Query: 70  RILAGTCHSAKMNRTI--IVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIG 127
           ++L G   S KM +T+  +V R + H +  Y +  KR     AH  P  + K GD V I 
Sbjct: 4   KVLTGVVVSDKMQKTVTVLVERQFPHPL--YGKVIKRSKKYLAH-DPEEKYKLGDVVEII 60
Query: 128 QCRPLSKTVRFNVLKVIPAG 147
           + RP+SK  RF VL+++ +G
Sbjct: 61  ESRPISKRKRFRVLRLVESG 80

>pdb|3FIC|Q Chain Q, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A 6.4 A Cryo-Em Map. This File Contains The 30s Subunit And The Ligands Length = 100

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 5/89 (5%)
Query: 70  RILAGTCHSAKMNRTI--IVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIG 127
           ++L G   S KM +T+  +V R + H +  Y +  KR     AH  P  + K GD V I 
Sbjct: 3   KVLTGVVVSDKMQKTVTVLVERQFPHPL--YGKVIKRSKKYLAH-DPEEKYKLGDVVEII 59
Query: 128 QCRPLSKTVRFNVLKVIPAGSSGGAKKAF 156
           + RP+SK  RF VL+++ +G     +K  
Sbjct: 60  ESRPISKRKRFRVLRLVESGRMDLVEKYL 88

>pdb|3MR8|Q Chain Q, Recognition Of The Amber Stop Codon By Release Factor Rf1. This Entry 3mr8 Contains 30s Ribosomal Subunit. The 50s Ribosomal Subunit Can Be Found In Pdb Entry 3ms1. Molecule B In The Same Asymmetric Unit Is Deposited As 3mrz (50s) And 3ms0 (30s). Length = 99

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 5/89 (5%)
Query: 70  RILAGTCHSAKMNRTI--IVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIG 127
           ++L G   S KM +T+  +V R + H +  Y +  KR     AH  P  + K GD V I 
Sbjct: 3   KVLTGVVVSDKMQKTVTVLVERQFPHPL--YGKVIKRSKKYLAH-DPEEKYKLGDVVEII 59
Query: 128 QCRPLSKTVRFNVLKVIPAGSSGGAKKAF 156
           + RP+SK  RF VL+++ +G     +K  
Sbjct: 60  ESRPISKRKRFRVLRLVESGRMDLVEKYL 88

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	159
3iz6_P	161	40S ribosomal protein S11 (S17P); eukaryotic ribos	5e-71
2xzm_Q	157	Ribosomal protein S17 containing protein; ribosome	7e-69
2zkq_q	158	40S ribosomal protein S11E; protein-RNA complex, 4	7e-69
3u5c_L	156	RP41, S18, YS12, 40S ribosomal protein S11-A; tran	5e-66
3bbn_Q	142	Ribosomal protein S17; small ribosomal subunit, sp	2e-09
3r8n_Q	80	30S ribosomal protein S17; protein biosynthesis, R	2e-09
2vqe_Q	105	30S ribosomal protein S17; tRNA-binding, rRNA-bind	3e-09
1qd7_I	89	S17 ribosomal protein; 30S ribosomal subunit, low	6e-09

>3iz6_P 40S ribosomal protein S11 (S17P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Length = 161

 Score =  210 bits (535), Expect = 5e-71
 Identities = 152/160 (95%), Positives = 158/160 (98%), Gaps = 2/160 (1%)

Query: 1   MAEQTEKAFLKQPKVFLSSKKAGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLSSKK+GKGK+PGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKKPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTGTVSIRGRI+AGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAH+SPCFRVKE
Sbjct: 61  FTGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHVSPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGA--KKAFTA 158
           GDHVIIGQCRPLSKTVRFNVLKVIPAGS+GG+  KKAFTA
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSTGGSGGKKAFTA 160

>2xzm_Q Ribosomal protein S17 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_Q Length = 157

 Score =  204 bits (521), Expect = 7e-69
 Identities = 96/157 (61%), Positives = 119/157 (75%), Gaps = 2/157 (1%)

Query: 1   MAEQTEKAFLKQPKVFLSSKKAGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60
           M  Q ++A+ KQ  VFL+SKK    K     G R++K+IGLGFKTP+EAIEGTY+DKKCP
Sbjct: 1   MDTQIQRAYQKQDGVFLNSKKLLAKKT--SAGVRYYKNIGLGFKTPKEAIEGTYVDKKCP 58

Query: 61  FTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FT  +SIRG+I+ G   S KMNRT+I+RR+YLH+V+KY RYEKRH NIP HISPCF VKE
Sbjct: 59  FTSNLSIRGKIIKGLVISTKMNRTVIIRRDYLHYVRKYNRYEKRHRNIPVHISPCFSVKE 118

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAFT 157
           GD ++ GQCRP+SKTVRFN L+V+P    G  +K F 
Sbjct: 119 GDILVAGQCRPISKTVRFNALQVVPNEIIGSVRKQFL 155

>2zkq_q 40S ribosomal protein S11E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 3jyv_Q* 1s1h_Q Length = 158

 Score =  204 bits (521), Expect = 7e-69
 Identities = 96/159 (60%), Positives = 121/159 (76%), Gaps = 5/159 (3%)

Query: 1   MAE-QTEKAFLKQPKVFLSSKKAGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKC 59
           MA+ QTE+A+ KQP +F + K+   G+   +   R++K+IGLGFKTP+EAIEGTYIDKKC
Sbjct: 1   MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC 60

Query: 60  PFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFR-V 118
           PFTG VSIRGRIL+G     KM RTI++RR+YLH+++KY R+EKRH N+  H+SPCFR V
Sbjct: 61  PFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV 120

Query: 119 KEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAFT 157
           + GD V +G+CRPLSKTVRFNVLKV  A    G KK F 
Sbjct: 121 QIGDIVTVGECRPLSKTVRFNVLKVTKA---AGTKKQFQ 156

>3u5c_L RP41, S18, YS12, 40S ribosomal protein S11-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_P 3o30_F 3o2z_F 3u5g_L 3jyv_Q* 1s1h_Q Length = 156

 Score =  197 bits (502), Expect = 5e-66
 Identities = 91/157 (57%), Positives = 115/157 (73%), Gaps = 7/157 (4%)

Query: 1   MAEQTEKAFLKQPKVFLSSKKAGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60
           +  Q+E+AF KQP +F + K     +       R++K+ GLGFKTP+ AIEG+YIDKKCP
Sbjct: 5   LTVQSERAFQKQPHIFNNPKVKTSKRTK-----RWYKNAGLGFKTPKTAIEGSYIDKKCP 59

Query: 61  FTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTG VSIRG+IL GT  S KM+RTI++RR YLH++ KY RYEKRH N+P H+SP FRV+ 
Sbjct: 60  FTGLVSIRGKILTGTVVSTKMHRTIVIRRAYLHYIPKYNRYEKRHKNVPVHVSPAFRVQV 119

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAFT 157
           GD V +GQCRP+SKTVRFNV+KV  A  +G A K F 
Sbjct: 120 GDIVTVGQCRPISKTVRFNVVKVSAA--AGKANKQFA 154

>3bbn_Q Ribosomal protein S17; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1 Length = 142

 Score = 52.1 bits (125), Expect = 2e-09
 Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 5/77 (6%)

Query: 70  RILAGTCHSAKMNRTIIVR--RNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIG 127
           + + G    A  ++T+ V   R   H   KY+R  +      AH  P  + K GD V + 
Sbjct: 61  KTMQGRVVCATSDKTVAVEVVRLAPH--PKYKRRVRMKKKYQAH-DPDNQFKVGDVVRLE 117

Query: 128 QCRPLSKTVRFNVLKVI 144
           + RP+SKT  F  L VI
Sbjct: 118 KSRPISKTKSFVALPVI 134

>2vqe_Q 30S ribosomal protein S17; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: b.40.4.5 PDB: 1gix_T* 1hnw_Q* 1hnx_Q* 1hnz_Q* 1hr0_Q 1ibk_Q* 1ibl_Q* 1ibm_Q 1jgo_T* 1jgp_T* 1jgq_T* 1ml5_T* 1xmo_Q* 1xmq_Q* 1xnq_Q* 1xnr_Q* 1yl4_T 2b64_Q* 2b9m_Q* 2b9o_Q* ... Length = 105

 Score = 50.8 bits (122), Expect = 3e-09
 Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 5/77 (6%)

Query: 70  RILAGTCHSAKMNRTIIVR--RNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIG 127
           ++L G   S KM +T+ V   R + H    Y +  KR     AH  P  + K GD V I 
Sbjct: 4   KVLTGVVVSDKMQKTVTVLVERQFPH--PLYGKVIKRSKKYLAH-DPEEKYKLGDVVEII 60

Query: 128 QCRPLSKTVRFNVLKVI 144
           + RP+SK  RF VL+++
Sbjct: 61  ESRPISKRKRFRVLRLV 77

>1qd7_I S17 ribosomal protein; 30S ribosomal subunit, low resolution model, ribosome; 5.50A {Thermus thermophilus} SCOP: i.1.1.3 PDB: 1eg0_G 1rip_A Length = 89

 Score = 49.5 bits (119), Expect = 6e-09
 Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 5/79 (6%)

Query: 68  RGRILAGTCHSAKMNRTIIVR--RNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVI 125
           + ++  G   S KM++TI V       H    Y +  K      AH       K GD V 
Sbjct: 1   QRKVYVGRVVSDKMDKTITVLVETYKKH--PLYGKRVKYSKKYKAH-DEHNEAKVGDIVK 57

Query: 126 IGQCRPLSKTVRFNVLKVI 144
           I + RPLS T RF +++++
Sbjct: 58  IMETRPLSATKRFRLVEIV 76

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	159
2xzm_Q	157	Ribosomal protein S17 containing protein; ribosome	100.0
3u5c_L	156	RP41, S18, YS12, 40S ribosomal protein S11-A; tran	100.0
2zkq_q	158	40S ribosomal protein S11E; protein-RNA complex, 4	100.0
3iz6_P	161	40S ribosomal protein S11 (S17P); eukaryotic ribos	100.0
3j20_R	113	30S ribosomal protein S17P; archaea, archaeal, KIN	100.0
3bbn_Q	142	Ribosomal protein S17; small ribosomal subunit, sp	100.0
1qd7_I	89	S17 ribosomal protein; 30S ribosomal subunit, low	100.0
3r8n_Q	80	30S ribosomal protein S17; protein biosynthesis, R	100.0
2vqe_Q	105	30S ribosomal protein S17; tRNA-binding, rRNA-bind	100.0

>2xzm_Q Ribosomal protein S17 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_Q

Probab=100.00  E-value=4.2e-74  Score=455.63  Aligned_cols=157  Identities=61%  Similarity=1.059  Sum_probs=149.5

Q ss_pred             CchhhHHhhccCcceeecccccCCCCCCCCCCceeeeeecccccCChhhhcccccCCCCCceeeeeeeceEEEEEEEecC
Q 031480            1 MAEQTEKAFLKQPKVFLSSKKAGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAK   80 (159)
Q Consensus         1 m~~q~~~a~qkq~~i~~~~~~~~~~~~~~~~~~r~~~~igl~~~~P~~~~~~~yiD~kcPf~g~~sirg~il~G~VvS~K   80 (159)
                      ||+|+|||||||++||+|+++.++++  +++++||++||||||++|+|||||+|||++|||||+|||||++|+|+|+|++
T Consensus         1 m~~q~e~a~qkq~~i~~~~~~~~~~~--~~~~~r~~k~iGl~~k~P~~~~~~~~~D~kCPf~G~lsvRgr~l~G~VVS~K   78 (157)
T 2xzm_Q            1 MDTQIQRAYQKQDGVFLNSKKLLAKK--TSAGVRYYKNIGLGFKTPKEAIEGTYVDKKCPFTSNLSIRGKIIKGLVISTK   78 (157)
T ss_dssp             CTTTTSSSSCCCCSSCCGGGGGGSSC--CSSSCCCCCCCCSSCCCCHHHHTCCCCCTTCSSSSSCCCCSCEEEEEEEECC
T ss_pred             CcchhhHhhccCcceeecceehhccc--cccCceeEEecccCCcCChHHhcccccCCCCCCccceeeeeEEEEEEEEEec
Confidence            99999999999999999999987554  6789999999999999999999999999999999999999999999999999


Q ss_pred             CCCeEEEEEeEEEeeeeeeeEEeeeeeEEEEcCCCCCCCCCCEEEEeeeecCCCeeeEEEEEEeecCCCCCcccccccC
Q 031480           81 MNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAFTAM  159 (159)
Q Consensus        81 M~KTvvV~v~~~~~~pKY~K~~kr~kk~~vHd~p~~~~kvGD~V~I~ecRPLSKtK~f~V~~Ii~~~~~~~~~k~f~~f  159 (159)
                      |+|||+|++++++|||+|+|+++|+++|+|||+|||+|++||+|+|+|||||||||+|+|++|++++..+.++|||++|
T Consensus        79 MdKTIvV~ve~~~~hpkY~K~vkr~kKy~AHDee~n~~kvGD~V~I~EcRPLSKtKrw~Vv~I~~ka~~g~~~k~f~~f  157 (157)
T 2xzm_Q           79 MNRTVIIRRDYLHYVRKYNRYEKRHRNIPVHISPCFSVKEGDILVAGQCRPISKTVRFNALQVVPNEIIGSVRKQFLLF  157 (157)
T ss_dssp             STTEEEEEEEEEEEETTTTEEEEEEEEEEEECCTTSCCCTTCEEEEEECCCCSSSCCEEEEEECCCCCCSCTTTCCCCC
T ss_pred             CCccEEEEEEEEEecCccceEeecceeEEEECCCCCCCCCCCEEEEEEcCCCCCcEEEEEEEEEeccccCccchhhhcC
Confidence            9999999999999999999999999999999988999999999999999999999999999999886532378999988

>3u5c_L RP41, S18, YS12, 40S ribosomal protein S11-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_P 3o30_F 3o2z_F 3u5g_L 3jyv_Q* 1s1h_Q

Probab=100.00  E-value=4.5e-73  Score=449.25  Aligned_cols=150  Identities=61%  Similarity=1.047  Sum_probs=143.4

Q ss_pred             hhhHHhhccCcceeecccccCCCCCCCCCCceeeeeecccccCChhhhcccccCCCCCceeeeeeeceEEEEEEEecCCC
Q 031480            3 EQTEKAFLKQPKVFLSSKKAGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMN   82 (159)
Q Consensus         3 ~q~~~a~qkq~~i~~~~~~~~~~~~~~~~~~r~~~~igl~~~~P~~~~~~~yiD~kcPf~g~~sirg~il~G~VvS~KM~   82 (159)
                      +|+|||||||++||+|++..     .+++.+||++||||||++|++||||+|||++|||||||||||++|+|+|+|++|+
T Consensus         7 ~q~e~a~qkq~~i~~~~~~~-----~~~~~~r~~~~iGl~~k~P~~a~~g~y~D~kCPf~G~lsvRgr~l~G~VVS~KMd   81 (156)
T 3u5c_L            7 VQSERAFQKQPHIFNNPKVK-----TSKRTKRWYKNAGLGFKTPKTAIEGSYIDKKCPFTGLVSIRGKILTGTVVSTKMH   81 (156)
T ss_dssp             SSCSSSCCCCTTCCCCSSSC-----CSSSSCCCCCCCSTTCCCCHHHHHCCCCCTTCTTTSSCCEEEEEEEEEEEECCST
T ss_pred             hhhhhhhccCcceeeccccc-----ccccCceeeeecCcCccCChhhccceeccccCCcccceeEeeEEEEEEEEeecCC
Confidence            39999999999999999953     3678999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEEeEEEeeeeeeeEEeeeeeEEEEcCCCCCCCCCCEEEEeeeecCCCeeeEEEEEEeecCCCCCcccccccC
Q 031480           83 RTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAFTAM  159 (159)
Q Consensus        83 KTvvV~v~~~~~~pKY~K~~kr~kk~~vHd~p~~~~kvGD~V~I~ecRPLSKtK~f~V~~Ii~~~~~~~~~k~f~~f  159 (159)
                      |||+|+++|++|||+|+|+++|+++|+|||+|||+|++||+|+|+|||||||||+|+|++|+++++  +++|||++|
T Consensus        82 KTIvV~ve~~~~hpkY~K~vkr~kKy~AHDe~~n~~kvGD~V~I~EcRPLSKtKrw~Vv~Iv~ka~--~~~k~f~~f  156 (156)
T 3u5c_L           82 RTIVIRRAYLHYIPKYNRYEKRHKNVPVHVSPAFRVQVGDIVTVGQCRPISKTVRFNVVKVSAAAG--KANKQFAKF  156 (156)
T ss_dssp             TEEEEEEEEEEEEGGGTEEEEEEEEEEEECCTTSCCCTTCEEEEEEEEEEETTEEEEEEEECCCCS--SSGGGCCCC
T ss_pred             CeEEEEEEEEeecCccceEEECceEEEEECCCcCcCCCCCEEEEEecccCCCcEeEEEEEEEecCC--CcccccccC
Confidence            999999999999999999999999999999779999999999999999999999999999999953  479999998

>2zkq_q 40S ribosomal protein S11E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 3jyv_Q* 1s1h_Q

Probab=100.00  E-value=5.1e-74  Score=455.54  Aligned_cols=156  Identities=61%  Similarity=1.065  Sum_probs=73.3

Q ss_pred             Cch-hhHHhhccCcceeecccccCCCCCCCCCCceeeeeecccccCChhhhcccccCCCCCceeeeeeeceEEEEEEEec
Q 031480            1 MAE-QTEKAFLKQPKVFLSSKKAGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSA   79 (159)
Q Consensus         1 m~~-q~~~a~qkq~~i~~~~~~~~~~~~~~~~~~r~~~~igl~~~~P~~~~~~~yiD~kcPf~g~~sirg~il~G~VvS~   79 (159)
                      ||+ |+|||||||++||+|+++.+++++++++..||++||||||++|+|||||+|||++|||||+|||||++|.|+|+|+
T Consensus         1 m~~~q~e~afqkq~~i~~~~~~~~~~~~~~~~~~r~~k~iGl~~k~P~~~~~~~~~D~kCPf~G~lsvRGr~l~G~VVS~   80 (158)
T 2zkq_q            1 MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKCPFTGNVSIRGRILSGVVTKM   80 (158)
T ss_dssp             ----------------------------------------------------------------------CEEEEEEEEC
T ss_pred             CcchhhhhhhccCcceeecceehhccccccccCceEEEecccCccCChHHhcccccCCCCCCccccceeeEEEEEEEEEc
Confidence            888 9999999999999999999877777889999999999999999999999999999999999999999999999999


Q ss_pred             CCCCeEEEEEeEEEeeeeeeeEEeeeeeEEEEcCCCC-CCCCCCEEEEeeeecCCCeeeEEEEEEeecCCCCCccccccc
Q 031480           80 KMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCF-RVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAFTA  158 (159)
Q Consensus        80 KM~KTvvV~v~~~~~~pKY~K~~kr~kk~~vHd~p~~-~~kvGD~V~I~ecRPLSKtK~f~V~~Ii~~~~~~~~~k~f~~  158 (159)
                      +|+|||+|++++++|||+|+|+++|+++|+|||+||| +|++||+|+|+|||||||||+|+|++|+++   +|++|||++
T Consensus        81 KMdKTIvV~ve~~~~hpkY~K~vkr~kKy~AHDe~~n~~~kvGD~V~I~E~RPLSKtKrw~Vv~I~~~---~~~~k~f~~  157 (158)
T 2zkq_q           81 KMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGDIVTVGECRPLSKTVRFNVLKVTKA---AGTKKQFQK  157 (158)
T ss_dssp             SSSCEEEEEEEEECSSTTCCCEEEEEEEECCBCCSSCCCC-CCCEEEEECCSCSSSCC-CEEEEEEEC------------
T ss_pred             cCCccEEEEEEEEEecCccceeeecceeEEEECCcccCcCCCCCEEEEEEccccCCcEEEEEEEEecC---CCcchhhhc
Confidence            9999999999999999999999999999999997788 899999999999999999999999999976   347899998


Q ss_pred             C
Q 031480          159 M  159 (159)
Q Consensus       159 f  159 (159)
                      |
T Consensus       158 f  158 (158)
T 2zkq_q          158 F  158 (158)
T ss_dssp             -
T ss_pred             C
Confidence            7

>3iz6_P 40S ribosomal protein S11 (S17P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=4.2e-75  Score=462.76  Aligned_cols=158  Identities=96%  Similarity=1.512  Sum_probs=84.1

Q ss_pred             CchhhHHhhccCcceeecccccCCCCCCCCCCceeeeeecccccCChhhhcccccCCCCCceeeeeeeceEEEEEEEecC
Q 031480            1 MAEQTEKAFLKQPKVFLSSKKAGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAK   80 (159)
Q Consensus         1 m~~q~~~a~qkq~~i~~~~~~~~~~~~~~~~~~r~~~~igl~~~~P~~~~~~~yiD~kcPf~g~~sirg~il~G~VvS~K   80 (159)
                      ||+|+|+|||||++||+|+++++++++.+++.+||++||||||++|++||||+|||++|||||||||||++|+|+|+|++
T Consensus         1 ~~~q~e~a~qkq~~i~~~~k~~~~~~~~~~~~~r~~k~iGl~~k~P~~a~~g~y~D~kCPf~G~lsiRgril~G~VVS~K   80 (161)
T 3iz6_P            1 MAEQTEKAFLKQPKVFLSSKKSGKGKKPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRIIAGTCHSAK   80 (161)
T ss_dssp             ---------------------------------------CCCCCCEEEECCCCSSSSCCSEEEEEEEEEEECTTTCCEEE
T ss_pred             CcchhhhhhccCccceecceeccccccccccCceEEEecCcCCCCChHHhcCcccccCCCccceeEEeeEEEEEEEEecc
Confidence            89999999999999999999998777788899999999999999999999999999999999999999999999999999


Q ss_pred             CCCeEEEEEeEEEeeeeeeeEEeeeeeEEEEcCCCCCCCCCCEEEEeeeecCCCeeeEEEEEEeecCCCC--Cccccccc
Q 031480           81 MNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSG--GAKKAFTA  158 (159)
Q Consensus        81 M~KTvvV~v~~~~~~pKY~K~~kr~kk~~vHd~p~~~~kvGD~V~I~ecRPLSKtK~f~V~~Ii~~~~~~--~~~k~f~~  158 (159)
                      |+|||+|+++|++|||+|+||++|+++|+|||+|||+|++||+|+|+|||||||||+|+|++|+++++.+  +.+|+|..
T Consensus        81 MdKTIvV~ve~~~~hpkY~K~vkr~kKy~AHDe~~n~~kvGD~V~I~EcRPLSKtKrw~Vv~Iv~~~~~~~~~~~k~f~~  160 (161)
T 3iz6_P           81 MNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHVSPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSTGGSGGKKAFTA  160 (161)
T ss_dssp             EEEEEEEECTTCCCCSSCEEEEEECCCSSSSCCEEEEECCCCCC------------------------------------
T ss_pred             CCCeEEEEEEEEEecCccceEEECceeEEEECCCCCcCCCCCEEEEEeccCCCCcEeEEEEEEEecCcccccccchhccc
Confidence            9999999999999999999999999999999966999999999999999999999999999999997653  56899974

>3j20_R 30S ribosomal protein S17P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=100.00  E-value=1.5e-54  Score=328.14  Aligned_cols=110  Identities=42%  Similarity=0.761  Sum_probs=104.7

Q ss_pred             eeeecccccCChhhhcccccCCCCCceeeeeeeceEEEEEEEecCCCCeEEEEEeEEEeeeeeeeEEeeeeeEEEEcCCC
Q 031480           36 WKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPC  115 (159)
Q Consensus        36 ~~~igl~~~~P~~~~~~~yiD~kcPf~g~~sirg~il~G~VvS~KM~KTvvV~v~~~~~~pKY~K~~kr~kk~~vHd~p~  115 (159)
                      |+||||||++|++    +|+|++|||||||||||++|+|+|+|+||+|||+|+++|++|||+|+||++++++|+|||+||
T Consensus         2 m~~igl~~~~p~~----~~~d~~cPf~G~~~vrgr~l~G~VvS~KM~KTivV~ve~~~~hpkY~K~~kr~kk~~aHDe~~   77 (113)
T 3j20_R            2 MRDIGLRVQPPAE----KCDDPKCPWHGNLKIHGRVFEGIVVSDKPRKTVTVERQYYFYLNKYERYELRRSKIHAHNPPC   77 (113)
T ss_dssp             CCCCCTTCCCCSS----CCCCSSSTTSSSCCCCSCEEEEEEEECCSTTEEEEEEEEEEEETTTTEEEEEEEEEEEECCTT
T ss_pred             chhcCCCCCCCcc----cccCCCCCCcceeeEeeEEEEEEEEeccCCceEEEEEEEEEEcCcccEEEECceEEEEECCCC
Confidence            5899999999974    566999999999999999999999999999999999999999999999999999999999669


Q ss_pred             CCCCCCCEEEEeeeecCCCeeeEEEEEEeecCCC
Q 031480          116 FRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSS  149 (159)
Q Consensus       116 ~~~kvGD~V~I~ecRPLSKtK~f~V~~Ii~~~~~  149 (159)
                      |+|++||+|+|+|||||||||+|+|++|++++.+
T Consensus        78 n~~~vGD~V~I~E~RPlSKtKr~~vv~i~~~a~~  111 (113)
T 3j20_R           78 INAKVGDKVLIAETRPLSKTKHFVVVAVLERAEE  111 (113)
T ss_dssp             SCCCTTSEEEEEECSCSSSSEEEEEEEECCCCCC
T ss_pred             CCCCCCCEEEEEecccCCCcEeEEEEEEEecccc
Confidence            9999999999999999999999999999998643

>3bbn_Q Ribosomal protein S17; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1

Probab=100.00  E-value=3.8e-42  Score=268.79  Aligned_cols=92  Identities=28%  Similarity=0.311  Sum_probs=75.6

Q ss_pred             CCCCCceeeeeeec-eEEEEEEEecCCCCeEEEEEeEEEeeeeeeeEEeeeeeEEEEcCCCCCCCCCCEEEEeeeecCCC
Q 031480           56 DKKCPFTGTVSIRG-RILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSK  134 (159)
Q Consensus        56 D~kcPf~g~~sirg-~il~G~VvS~KM~KTvvV~v~~~~~~pKY~K~~kr~kk~~vHd~p~~~~kvGD~V~I~ecRPLSK  134 (159)
                      |++|||||+|+||| ++|.|+|+|+||+|||+|++++++|||+|+||++++++|+||| |.|+|++||+|+|+|||||||
T Consensus        46 ~~~cP~~G~lsvrg~k~l~G~VVS~KMdKTIvV~Ver~~~hpkY~K~vkr~kKy~AHD-e~n~~kvGD~V~I~E~RPLSK  124 (142)
T 3bbn_Q           46 PNHRMPALVPVIRAMKTMQGRVVCATSDKTVAVEVVRLAPHPKYKRRVRMKKKYQAHD-PDNQFKVGDVVRLEKSRPISK  124 (142)
T ss_dssp             --------------CCEEEEEEEECCSTTEEEEEEEEEEECSSSCSEEEEEEEEEEEC-TTCCCCTTEEEEEEECCCSSS
T ss_pred             CCcCCCCccccccceEEEEEEEEEccCCceEEEEEEEEEEcCccccEEecceEEEEEC-CCCCCCCCCEEEEEEccCCCC
Confidence            99999999999999 9999999999999999999999999999999999999999999 677999999999999999999


Q ss_pred             eeeEEEEEEeecCC
Q 031480          135 TVRFNVLKVIPAGS  148 (159)
Q Consensus       135 tK~f~V~~Ii~~~~  148 (159)
                      +|+|+|++|++++.
T Consensus       125 tKrw~VveIveka~  138 (142)
T 3bbn_Q          125 TKSFVALPVIARAA  138 (142)
T ss_dssp             SCCEEECCCSEEEC
T ss_pred             cEEEEEEEEEeccc
Confidence            99999999998854

>1qd7_I S17 ribosomal protein; 30S ribosomal subunit, low resolution model, ribosome; 5.50A {Thermus thermophilus} SCOP: i.1.1.3 PDB: 1eg0_G 1rip_A

Probab=100.00  E-value=3.2e-35  Score=214.31  Aligned_cols=79  Identities=29%  Similarity=0.343  Sum_probs=75.7

Q ss_pred             ceEEEEEEEecCCCCeEEEEEeEEEeeeeeeeEEeeeeeEEEEcCCCCCCCCCCEEEEeeeecCCCeeeEEEEEEeecCC
Q 031480           69 GRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGS  148 (159)
Q Consensus        69 g~il~G~VvS~KM~KTvvV~v~~~~~~pKY~K~~kr~kk~~vHd~p~~~~kvGD~V~I~ecRPLSKtK~f~V~~Ii~~~~  148 (159)
                      .++|.|+|+|++|+|||+|++++++|||+|+||++++++|+||| |.|+|++||+|+|+|||||||||+|+|++|++++.
T Consensus         2 ~k~l~G~VvS~Km~KTivV~ve~~~~hp~Y~K~~kr~kk~~aHD-e~n~~k~GD~V~I~E~RPlSKtK~~~vv~iv~~a~   80 (89)
T 1qd7_I            2 RKVYVGRVVSDKMDKTITVLVETYKKHPLYGKRVKYSKKYKAHD-EHNEAKVGDIVKIMETRPLSATKRFRLVEIVEKAV   80 (89)
T ss_pred             cEEEEEEEEecCCCceEEEEEEEEEEcCccceEEeccEEEEEeC-CccCCCCCCEEEEEEcccCCCCEEEEEEEEEeece
Confidence            48999999999999999999999999999999999999999999 67799999999999999999999999999998763

>2vqe_Q 30S ribosomal protein S17; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: b.40.4.5 PDB: 1gix_T* 1hnw_Q* 1hnx_Q* 1hnz_Q* 1hr0_Q 1ibk_Q* 1ibl_Q* 1ibm_Q 1jgo_T* 1jgp_T* 1jgq_T* 1ml5_T* 1xmo_Q* 1xmq_Q* 1xnq_Q* 1xnr_Q* 1yl4_T 2b64_Q* 2b9m_Q* 2b9o_Q* ...

Probab=100.00  E-value=4.8e-34  Score=213.55  Aligned_cols=79  Identities=34%  Similarity=0.433  Sum_probs=75.8

Q ss_pred             ceEEEEEEEecCCCCeEEEEEeEEEeeeeeeeEEeeeeeEEEEcCCCCCCCCCCEEEEeeeecCCCeeeEEEEEEeecCC
Q 031480           69 GRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGS  148 (159)
Q Consensus        69 g~il~G~VvS~KM~KTvvV~v~~~~~~pKY~K~~kr~kk~~vHd~p~~~~kvGD~V~I~ecRPLSKtK~f~V~~Ii~~~~  148 (159)
                      .++|.|+|+|++|+|||+|++++++|||+|+||++++++|+||| |.|+|++||+|+|+|||||||||+|+|++|++++.
T Consensus         3 ~k~l~G~VvS~Km~KTivV~ver~~~hpkY~K~~kr~kk~~aHD-e~n~~k~GD~V~I~E~RPlSKtKr~~vv~iv~~a~   81 (105)
T 2vqe_Q            3 KKVLTGVVVSDKMQKTVTVLVERQFPHPLYGKVIKRSKKYLAHD-PEEKYKLGDVVEIIESRPISKRKRFRVLRLVESGR   81 (105)
T ss_dssp             CCEEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEEEEEEC-TTCCCCTTCEEEEEEEEEEETTEEEEEEEEEECCC
T ss_pred             ceEEEEEEEecCCCcEEEEEEEEEEEcCccceEEecceEEEEEC-CCCCCCCCCEEEEEEcccCCCCEEEEEEEEeeccc
Confidence            47999999999999999999999999999999999999999999 67899999999999999999999999999998853

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	159
d2uubq1	100	b.40.4.5 (Q:2-101) Ribosomal protein S17 {Thermus	1e-22
d2gy9q1	78	b.40.4.5 (Q:5-82) Ribosomal protein S17 {Escherich	9e-21
d1ripa_	81	b.40.4.5 (A:) Ribosomal protein S17 {Bacillus stea	4e-20

>d2uubq1 b.40.4.5 (Q:2-101) Ribosomal protein S17 {Thermus thermophilus [TaxId: 274]} Length = 100

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: Ribosomal protein S17
species: Thermus thermophilus [TaxId: 274]

 Score = 84.4 bits (209), Expect = 1e-22
 Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 1/75 (1%)

Query: 70  RILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQC 129
           ++L G   S KM +T+ V          Y +  KR     AH  P  + K GD V I + 
Sbjct: 3   KVLTGVVVSDKMQKTVTVLVERQFPHPLYGKVIKRSKKYLAH-DPEEKYKLGDVVEIIES 61

Query: 130 RPLSKTVRFNVLKVI 144
           RP+SK  RF VL+++
Sbjct: 62  RPISKRKRFRVLRLV 76

>d2gy9q1 b.40.4.5 (Q:5-82) Ribosomal protein S17 {Escherichia coli [TaxId: 562]} Length = 78

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: Ribosomal protein S17
species: Escherichia coli [TaxId: 562]

 Score = 78.6 bits (194), Expect = 9e-21
 Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 1/75 (1%)

Query: 70  RILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQC 129
           R L G   S KM ++I+V          Y ++ KR + +  H         GD V I +C
Sbjct: 1   RTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKLHVHDENN-ECGIGDVVEIREC 59

Query: 130 RPLSKTVRFNVLKVI 144
           RPLSKT  + +++V+
Sbjct: 60  RPLSKTKSWTLVRVV 74

>d1ripa_ b.40.4.5 (A:) Ribosomal protein S17 {Bacillus stearothermophilus [TaxId: 1422]} Length = 81

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: Ribosomal protein S17
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 77.4 bits (191), Expect = 4e-20
 Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 1/77 (1%)

Query: 68  RGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIG 127
           + ++  G   S KM++TI V          Y +  K      AH       K GD V I 
Sbjct: 1   QRKVYVGRVVSDKMDKTITVLVETYKKHPLYGKRVKYSKKYKAHDEHN-EAKVGDIVKIM 59

Query: 128 QCRPLSKTVRFNVLKVI 144
           + RPLS T RF +++++
Sbjct: 60  ETRPLSATKRFRLVEIV 76

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	159
d2gy9q1	78	Ribosomal protein S17 {Escherichia coli [TaxId: 56	100.0
d2uubq1	100	Ribosomal protein S17 {Thermus thermophilus [TaxId	100.0
d1ripa_	81	Ribosomal protein S17 {Bacillus stearothermophilus	99.97

>d2gy9q1 b.40.4.5 (Q:5-82) Ribosomal protein S17 {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: Ribosomal protein S17
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=4.8e-34  Score=201.62  Aligned_cols=77  Identities=31%  Similarity=0.466  Sum_probs=74.5

Q ss_pred             eEEEEEEEecCCCCeEEEEEeEEEeeeeeeeEEeeeeeEEEEcCCCCCCCCCCEEEEeeeecCCCeeeEEEEEEeecC
Q 031480           70 RILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAG  147 (159)
Q Consensus        70 ~il~G~VvS~KM~KTvvV~v~~~~~~pKY~K~~kr~kk~~vHd~p~~~~kvGD~V~I~ecRPLSKtK~f~V~~Ii~~~  147 (159)
                      ++|.|+|+|++|+|||+|+++|++|||+|+|+++++++|+||| |.|+|++||+|+|+|||||||+|+|+|++|++++
T Consensus         1 r~l~G~Vvs~km~KTv~V~v~r~~~h~ky~K~~~~~kky~aHD-e~~~~~~GD~V~I~e~rPlSK~K~~~v~~iv~ka   77 (78)
T d2gy9q1           1 RTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKLHVHD-ENNECGIGDVVEIRECRPLSKTKSWTLVRVVEKA   77 (78)
T ss_dssp             CEEEEEEEECCSSSEEEEEEEEEEECSSSCCEEEEEEEEEEEC-TTCCCCTTCEEEEEECSCSSSSCCEEEEEEEESC
T ss_pred             CEEEEEEEecCCCCcEEEEEEEEEEcCccCEEEEeeEEEEEEC-CCCCCccccEEEEEEcCcCCCcEEEEEEEEEecc
Confidence            5899999999999999999999999999999999999999999 6779999999999999999999999999999885

>d2uubq1 b.40.4.5 (Q:2-101) Ribosomal protein S17 {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: Ribosomal protein S17
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=2.3e-33  Score=206.37  Aligned_cols=79  Identities=34%  Similarity=0.433  Sum_probs=75.9

Q ss_pred             ceEEEEEEEecCCCCeEEEEEeEEEeeeeeeeEEeeeeeEEEEcCCCCCCCCCCEEEEeeeecCCCeeeEEEEEEeecCC
Q 031480           69 GRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGS  148 (159)
Q Consensus        69 g~il~G~VvS~KM~KTvvV~v~~~~~~pKY~K~~kr~kk~~vHd~p~~~~kvGD~V~I~ecRPLSKtK~f~V~~Ii~~~~  148 (159)
                      .++|.|+|+|++|+|||+|++++++|||+|+|+++++++|+||| |+|.|++||+|+|+|||||||+|+|+|++|++++.
T Consensus         2 kr~l~G~Vvs~km~KTv~V~v~r~~~h~ky~K~~~r~kk~~vHD-~~n~~k~GD~V~I~e~rPlSK~K~~~v~~Iv~ka~   80 (100)
T d2uubq1           2 KKVLTGVVVSDKMQKTVTVLVERQFPHPLYGKVIKRSKKYLAHD-PEEKYKLGDVVEIIESRPISKRKRFRVLRLVESGR   80 (100)
T ss_dssp             CCEEEEEECCCCBTTEEEEEEEEEEEETTTEEEEEEEEEEEEEC-TTCCCCTTCEEEEEEEEEEETTEEEEEEEEEECCC
T ss_pred             CeEEEEEEEEcCCCCcEEEEEEEEEeccccCEEEEeeEEEEEEC-CCCCCCCCCEEEEEECcCCCCceEEEEEEEEeccC
Confidence            47999999999999999999999999999999999999999999 78899999999999999999999999999999853

>d1ripa_ b.40.4.5 (A:) Ribosomal protein S17 {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: Ribosomal protein S17
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.97  E-value=1.6e-34  Score=205.50  Aligned_cols=79  Identities=29%  Similarity=0.354  Sum_probs=75.9

Q ss_pred             eceEEEEEEEecCCCCeEEEEEeEEEeeeeeeeEEeeeeeEEEEcCCCCCCCCCCEEEEeeeecCCCeeeEEEEEEeecC
Q 031480           68 RGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAG  147 (159)
Q Consensus        68 rg~il~G~VvS~KM~KTvvV~v~~~~~~pKY~K~~kr~kk~~vHd~p~~~~kvGD~V~I~ecRPLSKtK~f~V~~Ii~~~  147 (159)
                      +.++|.|+|+|++|+|||+|++++++|||+|+|+++++++|+||| |.++|++||+|+|.|||||||+|+|+|++|++++
T Consensus         1 ~rk~~~G~Vvs~km~KTv~V~v~r~~~~~ky~K~~kr~kk~~aHd-~~~~~~~GD~V~I~e~rPlSK~K~~~v~~Ii~ka   79 (81)
T d1ripa_           1 QRKVYVGRVVSDKMDKTITVLVETYKKHPLYGKRVKYSKKYKAHD-EHNEAKVGDIVKIMETRPLSATKRFRLVEIVEKA   79 (81)
T ss_dssp             CCSCBCCEESCCCSSSCSCCCBCCSCCCSCSSSCCCCSBCCCCCC-CSTTCSSCEECCBCCCCCSSSCCCCCCCCCBSSS
T ss_pred             CCcEEEEEEEecCCCCcEEEEEEEEEEcCccCEEEEeeEEEEEEC-CCCCCccCCEEEEEEccCCCCCeeEEEEEEehHh
Confidence            467899999999999999999999999999999999999999999 7889999999999999999999999999999885