Citrus Sinensis ID: 031482

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------16
Protein Sequence
MSNINLIPQDSPESDSAEKTNFELSEYLTFDEWFEDDQASKLFGYVQNPVYRANEVVEPGGTSTHFEGPSNSDNDSGREKKPVKERVAFKTKSDVEILDDGFKWRKYGKKMVKNSPNPRNYYKCSVDGCPVKKRVERDRDDPSYVITTYEGFHTHQSNP
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccEEEccccccccEEEcccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccccccccHHHcccEEEccccccccEEEcccccccccEEEEEcccccEEEEEEEcccccccccc
Coil and Loop (DISEMBL)
msninlipqdspesdsaektnfelseyltfdewfeddqasklfgyvqnpvyranevvepggtsthfegpsnsdndsgrekkpvkervafktksdveiLDDGFKWRKYGKKmvknspnprnyykcsvdgcpvkkrverdrddpsyvittyegfhthqsnp
Flexible Loop (DISEMBL)
msninlipqdspesdsaeKTNFELSEYLTFDEWFEDDQASKLFGYVQNPVYRANEVVepggtsthfegpsnsdndsgrekkpvkervafktksdveilddgfkwrkygkkmvknspnprnyykcsvdgcpvkkrverdrddpsyvittyegfhthqsnp
Low Complexity Region (SEG)
MSNINLIPQDSPESDSAEKTNFELSEYLTFDEWFEDDQASKLFGYVQNPVYRANEVVEPGGTSTHFEGPSNSDNDSGREKKPVKERVAFKTKSDVEILDDGFKWRKYGKKMVKNSPNPRNYYKCSVDGCPVKKRVERDRDDPSYVITTYEGFHTHQSNP
Disordered region (IsUnstruct)
*********************FELSEYLTFDEWFEDDQASKLFGYVQNPVYRANEV************************************SDVEILDDGFKWRKYGKKMVK*****RNYYKCSVDGCPVKK*********SYVITTYEGF*******
Disordered Region (DISOPRED)
*****************************************************************************************KTKSDVEILDDGFKWRKYGKKMVKNSPNPRNYYKCSVDGCPVKKRVERDRDDPSYVITTYE**H******
Disordered Region (DISEMBL)
*******************TNFELSEYLTFDEWFEDDQASKLFGYVQNPVYRANEVVEPGGT**********************ERVAFKTKSDVEILDDGFKWRKYGKKMVKNSPNPRNYYKCSVDGCPVKKRVERDRDDPSYVITTYEG********
Disordered Region (DISPRO)
************************************************************************************ERVAFKTKSDVEILDDGFKWRKYGKKMVKNSPNPRNYYKCSVDGCPVKKRVERDRDDPSYVITTYEGFH******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSNINLIPQDSPESDSAEKTNFELSEYLTFDEWFEDDQASKLFGYVQNPVYRANEVVEPGGTSTHFEGPSNSDNDSGREKKPVKERVAFKTKSDVEILDDGFKWRKYGKKMVKNSPNPRNYYKCSVDGCPVKKRVERDRDDPSYVITTYEGFHTHQSNP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	159	2.2.26 [Sep-21-2011]
Q8VWQ5	173	Probable WRKY transcripti	yes	no	0.855	0.786	0.572	4e-39
Q93WU9	194	Probable WRKY transcripti	no	no	0.496	0.407	0.670	8e-28
Q9FGZ4	399	Probable WRKY transcripti	no	no	0.440	0.175	0.7	9e-25
Q9C983	287	Probable WRKY transcripti	no	no	0.622	0.344	0.517	3e-24
Q93WV0	557	Probable WRKY transcripti	no	no	0.471	0.134	0.618	9e-24
O22900	337	Probable WRKY transcripti	no	no	0.496	0.234	0.620	2e-23
Q9SVB7	304	Probable WRKY transcripti	no	no	0.490	0.256	0.594	9e-23
Q8S8P5	519	Probable WRKY transcripti	no	no	0.471	0.144	0.605	1e-22
Q93WV4	282	Probable WRKY transcripti	no	no	0.440	0.248	0.657	2e-22
Q9C5T3	309	Probable WRKY transcripti	no	no	0.484	0.249	0.594	2e-22

>sp|Q8VWQ5|WRK50_ARATH Probable WRKY transcription factor 50 OS=Arabidopsis thaliana GN=WRKY50 PE=2 SV=1

 Score =  160 bits (404), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 87/152 (57%), Positives = 106/152 (69%), Gaps = 16/152 (10%)

Query: 22  FELSEYLTFDEWFEDDQASKLFGYVQNPVYRANEVVEP--GGTSTHFEGP---------- 69
           FE  E    DEW +DD  S + G  Q+  Y+ ++V      G+S+ F  P          
Sbjct: 20  FEFPELDLSDEWMDDDLVSAVSGMNQSYGYQTSDVAGALFSGSSSCFSHPESPSTKTYVA 79

Query: 70  ----SNSDNDSGREKKPVKERVAFKTKSDVEILDDGFKWRKYGKKMVKNSPNPRNYYKCS 125
               +++DN + +EKK +K RVAFKT+S+VE+LDDGFKWRKYGKKMVKNSP+PRNYYKCS
Sbjct: 80  ATATASADNQNKKEKKKIKGRVAFKTRSEVEVLDDGFKWRKYGKKMVKNSPHPRNYYKCS 139

Query: 126 VDGCPVKKRVERDRDDPSYVITTYEGFHTHQS 157
           VDGCPVKKRVERDRDDPS+VITTYEG H H S
Sbjct: 140 VDGCPVKKRVERDRDDPSFVITTYEGSHNHSS 171

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.
Arabidopsis thaliana (taxid: 3702)

>sp|Q93WU9|WRK51_ARATH Probable WRKY transcription factor 51 OS=Arabidopsis thaliana GN=WRKY51 PE=2 SV=1

 Score =  122 bits (306), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 53/79 (67%), Positives = 64/79 (81%)

Query: 79  EKKPVKERVAFKTKSDVEILDDGFKWRKYGKKMVKNSPNPRNYYKCSVDGCPVKKRVERD 138
           + K    RVAF+T+S ++++DDGFKWRKYGKK VKN+ N RNYYKCS +GC VKKRVERD
Sbjct: 90  QTKETGHRVAFRTRSKIDVMDDGFKWRKYGKKSVKNNINKRNYYKCSSEGCSVKKRVERD 149

Query: 139 RDDPSYVITTYEGFHTHQS 157
            DD +YVITTYEG H H+S
Sbjct: 150 GDDAAYVITTYEGVHNHES 168

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FGZ4|WRK48_ARATH Probable WRKY transcription factor 48 OS=Arabidopsis thaliana GN=WRKY48 PE=2 SV=1

 Score =  112 bits (280), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 49/70 (70%), Positives = 58/70 (82%)

Query: 86  RVAFKTKSDVEILDDGFKWRKYGKKMVKNSPNPRNYYKCSVDGCPVKKRVERDRDDPSYV 145
           R AF TKSD++ LDDG++WRKYG+K VKNSP PR+YY+C+  GC VKKRVER  DDPS V
Sbjct: 208 RFAFLTKSDIDNLDDGYRWRKYGQKAVKNSPYPRSYYRCTTVGCGVKKRVERSSDDPSIV 267

Query: 146 ITTYEGFHTH 155
           +TTYEG HTH
Sbjct: 268 MTTYEGQHTH 277

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C983|WRK57_ARATH Probable WRKY transcription factor 57 OS=Arabidopsis thaliana GN=WRKY57 PE=2 SV=1

 Score =  110 bits (276), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 59/114 (51%), Positives = 73/114 (64%), Gaps = 15/114 (13%)

Query: 59  PGGTSTHFEGPSNSDNDSGRE----KKPVKE-----------RVAFKTKSDVEILDDGFK 103
           P  TS+  E P+ +   S  +    + PVKE           R AF TKSDV+ L+DG++
Sbjct: 92  PSATSSSSEDPAENSTASAEKTPPPETPVKEKKKAQKRIRQPRFAFMTKSDVDNLEDGYR 151

Query: 104 WRKYGKKMVKNSPNPRNYYKCSVDGCPVKKRVERDRDDPSYVITTYEGFHTHQS 157
           WRKYG+K VKNSP PR+YY+C+   C VKKRVER  DDPS VITTYEG H HQ+
Sbjct: 152 WRKYGQKAVKNSPFPRSYYRCTNSRCTVKKRVERSSDDPSIVITTYEGQHCHQT 205

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93WV0|WRK20_ARATH Probable WRKY transcription factor 20 OS=Arabidopsis thaliana GN=WRKY20 PE=2 SV=1

 Score =  109 bits (272), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 47/76 (61%), Positives = 61/76 (80%), Gaps = 1/76 (1%)

Query: 81  KPVKE-RVAFKTKSDVEILDDGFKWRKYGKKMVKNSPNPRNYYKCSVDGCPVKKRVERDR 139
           KP++E RV  +T S+V+ILDDG++WRKYG+K+V+ +PNPR+YYKC+  GCPV+K VER  
Sbjct: 362 KPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTAHGCPVRKHVERAS 421

Query: 140 DDPSYVITTYEGFHTH 155
            DP  VITTYEG H H
Sbjct: 422 HDPKAVITTYEGKHDH 437

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|O22900|WRK23_ARATH Probable WRKY transcription factor 23 OS=Arabidopsis thaliana GN=WRKY23 PE=2 SV=1

 Score =  107 bits (268), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 49/79 (62%), Positives = 62/79 (78%)

Query: 79  EKKPVKERVAFKTKSDVEILDDGFKWRKYGKKMVKNSPNPRNYYKCSVDGCPVKKRVERD 138
           +K+  + RVAF TKS+V+ L+DG++WRKYG+K VKNSP PR+YY+C+   C VKKRVER 
Sbjct: 154 QKRQREARVAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTTASCNVKKRVERS 213

Query: 139 RDDPSYVITTYEGFHTHQS 157
             DPS V+TTYEG HTH S
Sbjct: 214 FRDPSTVVTTYEGQHTHIS 232

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SVB7|WRK13_ARATH Probable WRKY transcription factor 13 OS=Arabidopsis thaliana GN=WRKY13 PE=2 SV=1

 Score =  105 bits (263), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 47/79 (59%), Positives = 63/79 (79%), Gaps = 1/79 (1%)

Query: 78  REKKPVKE-RVAFKTKSDVEILDDGFKWRKYGKKMVKNSPNPRNYYKCSVDGCPVKKRVE 136
           + ++ V+E R  FKT S+V++LDDG++WRKYG+K+VKN+ +PR+YY+C+ D C VKKRVE
Sbjct: 201 KTRRKVREPRFCFKTLSEVDVLDDGYRWRKYGQKVVKNTQHPRSYYRCTQDKCRVKKRVE 260

Query: 137 RDRDDPSYVITTYEGFHTH 155
           R  DDP  VITTYEG H H
Sbjct: 261 RLADDPRMVITTYEGRHLH 279

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8S8P5|WRK33_ARATH Probable WRKY transcription factor 33 OS=Arabidopsis thaliana GN=WRKY33 PE=1 SV=2

 Score =  105 bits (262), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 46/76 (60%), Positives = 59/76 (77%), Gaps = 1/76 (1%)

Query: 81  KPVKE-RVAFKTKSDVEILDDGFKWRKYGKKMVKNSPNPRNYYKCSVDGCPVKKRVERDR 139
           K V+E R+  +T SD++ILDDG++WRKYG+K+VK +PNPR+YYKC+  GCPV+K VER  
Sbjct: 343 KTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTIGCPVRKHVERAS 402

Query: 140 DDPSYVITTYEGFHTH 155
            D   VITTYEG H H
Sbjct: 403 HDMRAVITTYEGKHNH 418

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93WV4|WRK71_ARATH Probable WRKY transcription factor 71 OS=Arabidopsis thaliana GN=WRKY71 PE=2 SV=1

 Score =  104 bits (260), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 46/70 (65%), Positives = 56/70 (80%)

Query: 86  RVAFKTKSDVEILDDGFKWRKYGKKMVKNSPNPRNYYKCSVDGCPVKKRVERDRDDPSYV 145
           RVAF TKS+++ L+DG++WRKYG+K VKNSP PR+YY+C+   C VKKRVER   DPS V
Sbjct: 123 RVAFMTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCNVKKRVERSFQDPSIV 182

Query: 146 ITTYEGFHTH 155
           ITTYEG H H
Sbjct: 183 ITTYEGKHNH 192

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C5T3|WRK26_ARATH Probable WRKY transcription factor 26 OS=Arabidopsis thaliana GN=WRKY26 PE=2 SV=2

 Score =  104 bits (259), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 47/79 (59%), Positives = 60/79 (75%)

Query: 78  REKKPVKERVAFKTKSDVEILDDGFKWRKYGKKMVKNSPNPRNYYKCSVDGCPVKKRVER 137
           RE+   + RV  +T SD++ILDDG++WRKYG+K+VK +PNPR+YYKC+  GC V+K VER
Sbjct: 213 REENVKEPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTFTGCFVRKHVER 272

Query: 138 DRDDPSYVITTYEGFHTHQ 156
              DP  VITTYEG H HQ
Sbjct: 273 AFQDPKSVITTYEGKHKHQ 291

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	159
343887283	190	WRKY DNA-binding protein [Citrus unshiu]	0.949	0.794	0.993	2e-83
255550107	159	WRKY transcription factor, putative [Ric	0.930	0.930	0.695	1e-51
147772891	166	hypothetical protein VITISV_012139 [Viti	0.987	0.945	0.611	3e-51
225429590	166	PREDICTED: probable WRKY transcription f	0.987	0.945	0.611	5e-51
224088782	165	predicted protein [Populus trichocarpa]	0.937	0.903	0.701	7e-48
356507032	161	PREDICTED: probable WRKY transcription f	0.855	0.844	0.695	3e-45
388508116	162	unknown [Lotus japonicus]	0.905	0.888	0.629	4e-43
449453049	153	PREDICTED: probable WRKY transcription f	0.899	0.934	0.614	2e-41
357437277	162	WRKY transcription factor [Medicago trun	0.849	0.833	0.621	4e-41
356518165	161	PREDICTED: probable WRKY transcription f	0.987	0.975	0.591	7e-40

>gi|343887283|dbj|BAK61829.1| WRKY DNA-binding protein [Citrus unshiu]

 Score =  313 bits (802), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 150/151 (99%), Positives = 151/151 (100%)

Query: 9   QDSPESDSAEKTNFELSEYLTFDEWFEDDQASKLFGYVQNPVYRANEVVEPGGTSTHFEG 68
           +DSPESDSAEKTNFELSEYLTFDEWFEDDQASKLFGYVQNPVYRANEVVEPGGTSTHFEG
Sbjct: 40  KDSPESDSAEKTNFELSEYLTFDEWFEDDQASKLFGYVQNPVYRANEVVEPGGTSTHFEG 99

Query: 69  PSNSDNDSGREKKPVKERVAFKTKSDVEILDDGFKWRKYGKKMVKNSPNPRNYYKCSVDG 128
           PSNSDNDSGREKKPVKERVAFKTKSDVEILDDGFKWRKYGKKMVKNSPNPRNYYKCSVDG
Sbjct: 100 PSNSDNDSGREKKPVKERVAFKTKSDVEILDDGFKWRKYGKKMVKNSPNPRNYYKCSVDG 159

Query: 129 CPVKKRVERDRDDPSYVITTYEGFHTHQSNP 159
           CPVKKRVERDRDDPSYVITTYEGFHTHQSNP
Sbjct: 160 CPVKKRVERDRDDPSYVITTYEGFHTHQSNP 190

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255550107|ref|XP_002516104.1| WRKY transcription factor, putative [Ricinus communis] gi|223544590|gb|EEF46106.1| WRKY transcription factor, putative [Ricinus communis]

 Score =  207 bits (527), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 105/151 (69%), Positives = 120/151 (79%), Gaps = 3/151 (1%)

Query: 11  SPESDSAEKTNFELSEYLTFDEWFED--DQASKLFGYVQNPVYRANEVVEPGGTSTHFEG 68
           S ESD  + TNFELSE+L FDEW ED  DQ+S L G +QNPVYRA+ V E GG  + +  
Sbjct: 8   SQESDYGDPTNFELSEFLMFDEWIEDANDQSSLLSGSIQNPVYRAHVVGESGGAISPYGE 67

Query: 69  PSNSDNDSG-REKKPVKERVAFKTKSDVEILDDGFKWRKYGKKMVKNSPNPRNYYKCSVD 127
            SN +   G REKK VKERVAFKTKS++EILDDGFKWRKYGKKMVKNSPNPRNYY+CSV+
Sbjct: 68  HSNGEGREGSREKKGVKERVAFKTKSEIEILDDGFKWRKYGKKMVKNSPNPRNYYRCSVE 127

Query: 128 GCPVKKRVERDRDDPSYVITTYEGFHTHQSN 158
           GCPVKKRVERD+DD  +VITTYEG H H S+
Sbjct: 128 GCPVKKRVERDKDDLRFVITTYEGIHNHPSS 158

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147772891|emb|CAN73664.1| hypothetical protein VITISV_012139 [Vitis vinifera]

 Score =  206 bits (524), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 99/162 (61%), Positives = 127/162 (78%), Gaps = 5/162 (3%)

Query: 1   MSNINLIPQDSPESDS----AEKTNFELSEYLTFDEWFEDDQASKLFG-YVQNPVYRANE 55
           M++     QDSPE++S     + +NFELSEYL FD+  E+D ++ L   + QNP++  NE
Sbjct: 1   MADTTAGSQDSPEAESDFELGDTSNFELSEYLLFDDLMEEDHSAFLASEFAQNPIHPGNE 60

Query: 56  VVEPGGTSTHFEGPSNSDNDSGREKKPVKERVAFKTKSDVEILDDGFKWRKYGKKMVKNS 115
           V +PG +S+  E P++ +++SG++KK  KERVAF TKS++EILDDGFKWRKYGKKMVKNS
Sbjct: 61  VDKPGSSSSQHERPASRNSESGQKKKEAKERVAFXTKSEIEILDDGFKWRKYGKKMVKNS 120

Query: 116 PNPRNYYKCSVDGCPVKKRVERDRDDPSYVITTYEGFHTHQS 157
           PNPRNYY+CSVDGC VKKRVERDR+DP YVITTYEG H H+S
Sbjct: 121 PNPRNYYRCSVDGCNVKKRVERDREDPKYVITTYEGIHNHES 162

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225429590|ref|XP_002279407.1| PREDICTED: probable WRKY transcription factor 50 [Vitis vinifera] gi|296081679|emb|CBI20684.3| unnamed protein product [Vitis vinifera]

 Score =  205 bits (522), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 99/162 (61%), Positives = 127/162 (78%), Gaps = 5/162 (3%)

Query: 1   MSNINLIPQDSPESDS----AEKTNFELSEYLTFDEWFEDDQASKLFG-YVQNPVYRANE 55
           M++     QDSPE++S     + +NFELSEYL FD+  E+D ++ L   + QNP++  NE
Sbjct: 1   MADTTAGSQDSPEAESDFELGDTSNFELSEYLLFDDLMEEDHSAFLASEFAQNPIHPGNE 60

Query: 56  VVEPGGTSTHFEGPSNSDNDSGREKKPVKERVAFKTKSDVEILDDGFKWRKYGKKMVKNS 115
           V +PG +S+  E P++ +++SG++KK  KERVAF TKS++EILDDGFKWRKYGKKMVKNS
Sbjct: 61  VDKPGSSSSQHERPASRNSESGQKKKEAKERVAFITKSEIEILDDGFKWRKYGKKMVKNS 120

Query: 116 PNPRNYYKCSVDGCPVKKRVERDRDDPSYVITTYEGFHTHQS 157
           PNPRNYY+CSVDGC VKKRVERDR+DP YVITTYEG H H+S
Sbjct: 121 PNPRNYYRCSVDGCNVKKRVERDREDPKYVITTYEGIHNHES 162

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224088782|ref|XP_002308538.1| predicted protein [Populus trichocarpa] gi|222854514|gb|EEE92061.1| predicted protein [Populus trichocarpa]

 Score =  195 bits (495), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 108/154 (70%), Positives = 123/154 (79%), Gaps = 5/154 (3%)

Query: 9   QDSPE-SDSA--EKTNFELSEYLTFDEW--FEDDQASKLFGYVQNPVYRANEVVEPGGTS 63
           QD+PE SD A  + +NFELSE+LTFDEW   ED  +S    Y  NPVYRA+ V E GG+S
Sbjct: 10  QDTPELSDFAHDQLSNFELSEFLTFDEWIALEDAPSSIASSYACNPVYRAHVVGESGGSS 69

Query: 64  THFEGPSNSDNDSGREKKPVKERVAFKTKSDVEILDDGFKWRKYGKKMVKNSPNPRNYYK 123
           +  E  S  + + GREKK  KERVAFKTKS++EILDDG+KWRKYGKKMVKNSPNPRNYY+
Sbjct: 70  SPREELSGGEGEEGREKKEAKERVAFKTKSEIEILDDGYKWRKYGKKMVKNSPNPRNYYR 129

Query: 124 CSVDGCPVKKRVERDRDDPSYVITTYEGFHTHQS 157
           CSV+GCPVKKRVERDRDDP YVITTYEG HTHQS
Sbjct: 130 CSVEGCPVKKRVERDRDDPRYVITTYEGIHTHQS 163

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356507032|ref|XP_003522275.1| PREDICTED: probable WRKY transcription factor 50-like [Glycine max]

 Score =  186 bits (472), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 96/138 (69%), Positives = 110/138 (79%), Gaps = 2/138 (1%)

Query: 22  FELSEYLTFD--EWFEDDQASKLFGYVQNPVYRANEVVEPGGTSTHFEGPSNSDNDSGRE 79
            ELSEYL FD  +W +D   S + G+V +   +ANEV   GG+STHFE  S+ D  + RE
Sbjct: 22  LELSEYLNFDDDQWPDDYPESFVSGHVFSHNNQANEVGNFGGSSTHFEESSSRDVGNERE 81

Query: 80  KKPVKERVAFKTKSDVEILDDGFKWRKYGKKMVKNSPNPRNYYKCSVDGCPVKKRVERDR 139
           KK V++RVAFKTKS+VEILDDGFKWRKYGKKMVKNSPNPRNYY+CSVDGC VKKRVERD+
Sbjct: 82  KKEVRDRVAFKTKSEVEILDDGFKWRKYGKKMVKNSPNPRNYYRCSVDGCQVKKRVERDK 141

Query: 140 DDPSYVITTYEGFHTHQS 157
           DDP YVITTYEG H HQS
Sbjct: 142 DDPRYVITTYEGIHNHQS 159

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388508116|gb|AFK42124.1| unknown [Lotus japonicus]

 Score =  179 bits (454), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 95/151 (62%), Positives = 116/151 (76%), Gaps = 7/151 (4%)

Query: 11  SPESD-SAEKTNFELSEYLTFDE--WFEDDQASKLFG-YVQNPVYRANEVVEPGGTSTHF 66
           SP+SD +++  NFELSEYL FD+  W +DD+       +V N V++ANEV + GG  ++F
Sbjct: 13  SPDSDLTSQWPNFELSEYLEFDDNHWLDDDREESFASKHVPNQVFQANEVGDFGGGGSNF 72

Query: 67  EGPSNSDNDSGREKKPVKERVAFKTKSDVEILDDGFKWRKYGKKMVKNSPNPRNYYKCSV 126
           EG S + +   +  K  +ERVAFKTKS+VEIL+DGFKWRKYGKKMVKNSPNPRNYY+CSV
Sbjct: 73  EGSSRTID---KNIKGARERVAFKTKSEVEILNDGFKWRKYGKKMVKNSPNPRNYYRCSV 129

Query: 127 DGCPVKKRVERDRDDPSYVITTYEGFHTHQS 157
           +GCPVKKRVERD DD  YVITTYEG HTH S
Sbjct: 130 EGCPVKKRVERDNDDSRYVITTYEGMHTHPS 160

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449453049|ref|XP_004144271.1| PREDICTED: probable WRKY transcription factor 51-like [Cucumis sativus] gi|449489386|ref|XP_004158296.1| PREDICTED: probable WRKY transcription factor 51-like [Cucumis sativus]

 Score =  173 bits (439), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 91/148 (61%), Positives = 113/148 (76%), Gaps = 5/148 (3%)

Query: 11  SPESDSAEKTNFELSEYLTFDEWFEDDQASKLFGYVQNPVYRANEVVEPGGTSTHFEGPS 70
           + ESD +E+  FE ++++ FD W  ++ +S L   V  PVY+  EV E  G +     PS
Sbjct: 11  TSESDLSEQPGFEFTDWM-FDGWL-NENSSSLTDSVMYPVYQEGEVDEFVGNTIQQGEPS 68

Query: 71  NSDNDSGREKKPVKERVAFKTKSDVEILDDGFKWRKYGKKMVKNSPNPRNYYKCSVDGCP 130
           +   D GRE++ ++ER AFKTKS+VEILDDGFKWRKYGKKMVKNSPNPRNYYKCSV+GCP
Sbjct: 69  S--RDYGRERE-IRERFAFKTKSEVEILDDGFKWRKYGKKMVKNSPNPRNYYKCSVEGCP 125

Query: 131 VKKRVERDRDDPSYVITTYEGFHTHQSN 158
           VKKRVERDR+DP YVITTYEG HTH+S+
Sbjct: 126 VKKRVERDREDPKYVITTYEGVHTHESS 153

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357437277|ref|XP_003588914.1| WRKY transcription factor [Medicago truncatula] gi|355477962|gb|AES59165.1| WRKY transcription factor [Medicago truncatula]

 Score =  172 bits (437), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 97/156 (62%), Positives = 116/156 (74%), Gaps = 21/156 (13%)

Query: 11  SPESD-SAEKTNFELSEYLTFD--EWFEDDQASKLFGYVQNPVYRANEVVEPGGTSTHFE 67
           SPESD S ++  FELS+YL+FD  EW +++  ++        V++ANEV   GG+  H E
Sbjct: 13  SPESDFSNQQWPFELSDYLSFDDNEWLQNNPTTESL------VFQANEVA--GGS--HIE 62

Query: 68  GPSNSDND------SGRE--KKPVKERVAFKTKSDVEILDDGFKWRKYGKKMVKNSPNPR 119
           G S+S  D      SG E  KK VKERVAFKTKS +EILDDG++WRKYGKKMVKNSPNPR
Sbjct: 63  GSSSSIRDTNNMNMSGNENWKKEVKERVAFKTKSLIEILDDGYRWRKYGKKMVKNSPNPR 122

Query: 120 NYYKCSVDGCPVKKRVERDRDDPSYVITTYEGFHTH 155
           NYY+CSV+GCPVKKRVERD +D SYVITTYEG HTH
Sbjct: 123 NYYRCSVEGCPVKKRVERDNNDSSYVITTYEGMHTH 158

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356518165|ref|XP_003527752.1| PREDICTED: probable WRKY transcription factor 50-like [Glycine max]

 Score =  168 bits (425), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 94/159 (59%), Positives = 113/159 (71%), Gaps = 2/159 (1%)

Query: 1   MSNINLIPQDSPESDSAEKTNFELSEYLTFDEWFEDDQASKLF--GYVQNPVYRANEVVE 58
           M++ N  P DS ++    +   ELSE+L FD+    D     F  G+  +   +ANEV  
Sbjct: 1   MTDKNPRPADSADNYVTNQWPLELSEHLNFDDDQWLDDDPDSFVSGHAFSHNNQANEVGG 60

Query: 59  PGGTSTHFEGPSNSDNDSGREKKPVKERVAFKTKSDVEILDDGFKWRKYGKKMVKNSPNP 118
            GG+ THFE  S+ D  + REKK V++RVAFKTKS+VEILDDG KWRKYGKKMVKNSPNP
Sbjct: 61  FGGSGTHFEESSSRDVGNEREKKEVRDRVAFKTKSEVEILDDGSKWRKYGKKMVKNSPNP 120

Query: 119 RNYYKCSVDGCPVKKRVERDRDDPSYVITTYEGFHTHQS 157
           RNYY+CSVDG  VKKRVERD+DDP +VITTYEG HTH S
Sbjct: 121 RNYYRCSVDGWQVKKRVERDKDDPRFVITTYEGIHTHPS 159

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	159
TAIR|locus:2179739	173	WRKY50 "WRKY DNA-binding prote	0.899	0.826	0.568	4.6e-41
TAIR|locus:2177639	194	WRKY51 "WRKY DNA-binding prote	0.628	0.515	0.586	3.9e-28
TAIR|locus:2157829	399	WRKY48 "WRKY DNA-binding prote	0.484	0.192	0.662	3.6e-25
TAIR|locus:2007081	287	WRKY57 "AT1G69310" [Arabidopsi	0.691	0.383	0.495	9.7e-25
TAIR|locus:2133852	557	WRKY20 [Arabidopsis thaliana (	0.471	0.134	0.618	1.2e-24
TAIR|locus:2078703	147	WRKY45 "WRKY DNA-binding prote	0.547	0.591	0.555	4.2e-24
TAIR|locus:2019382	282	WRKY71 "WRKY DNA-binding prote	0.484	0.273	0.636	1.4e-23
TAIR|locus:2065124	337	WRKY23 "WRKY DNA-binding prote	0.496	0.234	0.620	2.9e-23
TAIR|locus:2057212	519	WRKY33 "AT2G38470" [Arabidopsi	0.899	0.275	0.389	3e-23
TAIR|locus:2169354	309	WRKY26 "WRKY DNA-binding prote	0.559	0.288	0.544	3.8e-23

TAIR|locus:2179739 WRKY50 "WRKY DNA-binding protein 50" [Arabidopsis thaliana (taxid:3702)]

 Score = 436 (158.5 bits), Expect = 4.6e-41, P = 4.6e-41
 Identities = 91/160 (56%), Positives = 109/160 (68%)

Query:    14 SDSAEKTNFELSEYLTFDEWFEDDQASKLFGYVQNPVYRANEVVEP--GGTST---HFEG 68
             SD      FE  E    DEW +DD  S + G  Q+  Y+ ++V      G+S+   H E 
Sbjct:    13 SDDTHSV-FEFPELDLSDEWMDDDLVSAVSGMNQSYGYQTSDVAGALFSGSSSCFSHPES 71

Query:    69 PS-----------NSDNDSGREKKPVKERVAFKTKSDVEILDDGFKWRKYGKKMVKNSPN 117
             PS           ++DN + +EKK +K RVAFKT+S+VE+LDDGFKWRKYGKKMVKNSP+
Sbjct:    72 PSTKTYVAATATASADNQNKKEKKKIKGRVAFKTRSEVEVLDDGFKWRKYGKKMVKNSPH 131

Query:   118 PRNYYKCSVDGCPVKKRVERDRDDPSYVITTYEGFHTHQS 157
             PRNYYKCSVDGCPVKKRVERDRDDPS+VITTYEG H H S
Sbjct:   132 PRNYYKCSVDGCPVKKRVERDRDDPSFVITTYEGSHNHSS 171

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=IGI

GO:0050832 "defense response to fungus" evidence=IGI

TAIR|locus:2177639 WRKY51 "WRKY DNA-binding protein 51" [Arabidopsis thaliana (taxid:3702)]

 Score = 314 (115.6 bits), Expect = 3.9e-28, P = 3.9e-28
 Identities = 61/104 (58%), Positives = 73/104 (70%)

Query:    58 EPGGT-STHFEGPSNSDNDSGREKKPVKE---RVAFKTKSDVEILDDGFKWRKYGKKMVK 113
             E GG+ S        S N   +E    KE   RVAF+T+S ++++DDGFKWRKYGKK VK
Sbjct:    65 ESGGSGSATTLSKKESTNRGSKESDQTKETGHRVAFRTRSKIDVMDDGFKWRKYGKKSVK 124

Query:   114 NSPNPRNYYKCSVDGCPVKKRVERDRDDPSYVITTYEGFHTHQS 157
             N+ N RNYYKCS +GC VKKRVERD DD +YVITTYEG H H+S
Sbjct:   125 NNINKRNYYKCSSEGCSVKKRVERDGDDAAYVITTYEGVHNHES 168

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=IGI

GO:0042742 "defense response to bacterium" evidence=IGI

GO:0050832 "defense response to fungus" evidence=IGI

TAIR|locus:2157829 WRKY48 "WRKY DNA-binding protein 48" [Arabidopsis thaliana (taxid:3702)]

 Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
 Identities = 51/77 (66%), Positives = 62/77 (80%)

Query:    79 EKKPVKERVAFKTKSDVEILDDGFKWRKYGKKMVKNSPNPRNYYKCSVDGCPVKKRVERD 138
             +KK  + R AF TKSD++ LDDG++WRKYG+K VKNSP PR+YY+C+  GC VKKRVER 
Sbjct:   201 QKKAREARFAFLTKSDIDNLDDGYRWRKYGQKAVKNSPYPRSYYRCTTVGCGVKKRVERS 260

Query:   139 RDDPSYVITTYEGFHTH 155
              DDPS V+TTYEG HTH
Sbjct:   261 SDDPSIVMTTYEGQHTH 277

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0003677 "DNA binding" evidence=IDA

GO:0009617 "response to bacterium" evidence=IEP

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0006865 "amino acid transport" evidence=RCA

GO:0015824 "proline transport" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0052542 "defense response by callose deposition" evidence=RCA

TAIR|locus:2007081 WRKY57 "AT1G69310" [Arabidopsis thaliana (taxid:3702)]

 Score = 282 (104.3 bits), Expect = 9.7e-25, P = 9.7e-25
 Identities = 57/115 (49%), Positives = 74/115 (64%)

Query:    48 NPVYRANEVVEPGGTSTHFEGPSNSDNDSGREKKPVKERV-----AFKTKSDVEILDDGF 102
             NP   ++   +P   ST     +       +EKK  ++R+     AF TKSDV+ L+DG+
Sbjct:    91 NPSATSSSSEDPAENSTASAEKTPPPETPVKEKKKAQKRIRQPRFAFMTKSDVDNLEDGY 150

Query:   103 KWRKYGKKMVKNSPNPRNYYKCSVDGCPVKKRVERDRDDPSYVITTYEGFHTHQS 157
             +WRKYG+K VKNSP PR+YY+C+   C VKKRVER  DDPS VITTYEG H HQ+
Sbjct:   151 RWRKYGQKAVKNSPFPRSYYRCTNSRCTVKKRVERSSDDPSIVITTYEGQHCHQT 205

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0006970 "response to osmotic stress" evidence=IMP

GO:0009414 "response to water deprivation" evidence=IMP

GO:0009651 "response to salt stress" evidence=IMP

TAIR|locus:2133852 WRKY20 [Arabidopsis thaliana (taxid:3702)]

 Score = 272 (100.8 bits), Expect = 1.2e-24, Sum P(2) = 1.2e-24
 Identities = 47/76 (61%), Positives = 61/76 (80%)

Query:    81 KPVKE-RVAFKTKSDVEILDDGFKWRKYGKKMVKNSPNPRNYYKCSVDGCPVKKRVERDR 139
             KP++E RV  +T S+V+ILDDG++WRKYG+K+V+ +PNPR+YYKC+  GCPV+K VER  
Sbjct:   362 KPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTAHGCPVRKHVERAS 421

Query:   140 DDPSYVITTYEGFHTH 155
              DP  VITTYEG H H
Sbjct:   422 HDPKAVITTYEGKHDH 437

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009611 "response to wounding" evidence=IEP

GO:0009961 "response to 1-aminocyclopropane-1-carboxylic acid" evidence=IEP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0010050 "vegetative phase change" evidence=RCA

TAIR|locus:2078703 WRKY45 "WRKY DNA-binding protein 45" [Arabidopsis thaliana (taxid:3702)]

 Score = 276 (102.2 bits), Expect = 4.2e-24, P = 4.2e-24
 Identities = 50/90 (55%), Positives = 66/90 (73%)

Query:    69 PSNSDNDSGREKKPVKER---VAFKTKSDVEILDDGFKWRKYGKKMVKNSPNPRNYYKCS 125
             P+ S  +  R KK  KER    AF+T+S V+ILDDG++WRKYG+K VKN+P PR+YYKC+
Sbjct:    32 PTTSSEEKPRSKKKKKEREARYAFQTRSQVDILDDGYRWRKYGQKAVKNNPFPRSYYKCT 91

Query:   126 VDGCPVKKRVERDRDDPSYVITTYEGFHTH 155
              +GC VKK+V+R   D   V+TTY+G HTH
Sbjct:    92 EEGCRVKKQVQRQWGDEGVVVTTYQGVHTH 121

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2019382 WRKY71 "WRKY DNA-binding protein 71" [Arabidopsis thaliana (taxid:3702)]

 Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
 Identities = 49/77 (63%), Positives = 60/77 (77%)

Query:    79 EKKPVKERVAFKTKSDVEILDDGFKWRKYGKKMVKNSPNPRNYYKCSVDGCPVKKRVERD 138
             EKK  + RVAF TKS+++ L+DG++WRKYG+K VKNSP PR+YY+C+   C VKKRVER 
Sbjct:   116 EKKEREVRVAFMTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCNVKKRVERS 175

Query:   139 RDDPSYVITTYEGFHTH 155
               DPS VITTYEG H H
Sbjct:   176 FQDPSIVITTYEGKHNH 192

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2065124 WRKY23 "WRKY DNA-binding protein 23" [Arabidopsis thaliana (taxid:3702)]

 Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
 Identities = 49/79 (62%), Positives = 62/79 (78%)

Query:    79 EKKPVKERVAFKTKSDVEILDDGFKWRKYGKKMVKNSPNPRNYYKCSVDGCPVKKRVERD 138
             +K+  + RVAF TKS+V+ L+DG++WRKYG+K VKNSP PR+YY+C+   C VKKRVER 
Sbjct:   154 QKRQREARVAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTTASCNVKKRVERS 213

Query:   139 RDDPSYVITTYEGFHTHQS 157
               DPS V+TTYEG HTH S
Sbjct:   214 FRDPSTVVTTYEGQHTHIS 232

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009624 "response to nematode" evidence=IEP

GO:0009733 "response to auxin stimulus" evidence=IEP

TAIR|locus:2057212 WRKY33 "AT2G38470" [Arabidopsis thaliana (taxid:3702)]

 Score = 274 (101.5 bits), Expect = 3.0e-23, P = 3.0e-23
 Identities = 58/149 (38%), Positives = 86/149 (57%)

Query:    10 DSPESDSA--EKTNFELSEYLTFDEWFEDDQASKLFGYVQNPVYRANEVVEPGGTSTHFE 67
             D P S+++  +  +F + +    D    D      F    + V R  E       +  ++
Sbjct:   273 DQPNSNNSFHQSDSFGMQQE---DNTTSDSVGDDEFEQGSSIVSRDEEDCGSEPEAKRWK 329

Query:    68 GPSNSDNDSGREKKPVKE-RVAFKTKSDVEILDDGFKWRKYGKKMVKNSPNPRNYYKCSV 126
             G + ++  +G   K V+E R+  +T SD++ILDDG++WRKYG+K+VK +PNPR+YYKC+ 
Sbjct:   330 GDNETNGGNGGGSKTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTT 389

Query:   127 DGCPVKKRVERDRDDPSYVITTYEGFHTH 155
              GCPV+K VER   D   VITTYEG H H
Sbjct:   390 IGCPVRKHVERASHDMRAVITTYEGKHNH 418

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0050832 "defense response to fungus" evidence=RCA;IMP

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0010120 "camalexin biosynthetic process" evidence=IMP

GO:0006970 "response to osmotic stress" evidence=IEP

GO:0009408 "response to heat" evidence=IEP

GO:0009409 "response to cold" evidence=IEP

GO:0009414 "response to water deprivation" evidence=IEP

GO:0009651 "response to salt stress" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0034605 "cellular response to heat" evidence=IMP

GO:0070370 "cellular heat acclimation" evidence=IMP

GO:0010508 "positive regulation of autophagy" evidence=IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

TAIR|locus:2169354 WRKY26 "WRKY DNA-binding protein 26" [Arabidopsis thaliana (taxid:3702)]

 Score = 267 (99.0 bits), Expect = 3.8e-23, P = 3.8e-23
 Identities = 49/90 (54%), Positives = 65/90 (72%)

Query:    68 GPSNSDNDSGREKKPVKE-RVAFKTKSDVEILDDGFKWRKYGKKMVKNSPNPRNYYKCSV 126
             G   ++    + ++ VKE RV  +T SD++ILDDG++WRKYG+K+VK +PNPR+YYKC+ 
Sbjct:   202 GEDETEAKRWKREENVKEPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTF 261

Query:   127 DGCPVKKRVERDRDDPSYVITTYEGFHTHQ 156
              GC V+K VER   DP  VITTYEG H HQ
Sbjct:   262 TGCFVRKHVERAFQDPKSVITTYEGKHKHQ 291

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0034605 "cellular response to heat" evidence=IMP

GO:0070370 "cellular heat acclimation" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8VWQ5	WRK50_ARATH	No assigned EC number	0.5723	0.8553	0.7861	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	159
smart00774	59	smart00774, WRKY, DNA binding domain	9e-34
pfam03106	60	pfam03106, WRKY, WRKY DNA -binding domain	9e-33

>gnl|CDD|214815 smart00774, WRKY, DNA binding domain

 Score =  112 bits (284), Expect = 9e-34
 Identities = 37/59 (62%), Positives = 47/59 (79%), Gaps = 1/59 (1%)

Query: 98  LDDGFKWRKYGKKMVKNSPNPRNYYKCSVD-GCPVKKRVERDRDDPSYVITTYEGFHTH 155
           LDDG++WRKYG+K++K SP PR+YY+C+   GCP KK+V+R  DDPS V  TYEG HTH
Sbjct: 1   LDDGYQWRKYGQKVIKGSPYPRSYYRCTYTQGCPAKKQVQRSDDDPSVVEVTYEGEHTH 59

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding. Length = 59

>gnl|CDD|145969 pfam03106, WRKY, WRKY DNA -binding domain

 Score =  110 bits (277), Expect = 9e-33
 Identities = 38/58 (65%), Positives = 44/58 (75%)

Query: 98  LDDGFKWRKYGKKMVKNSPNPRNYYKCSVDGCPVKKRVERDRDDPSYVITTYEGFHTH 155
           LDDG+ WRKYG+K VK SP PR+YY+C+  GCPVKK+VER  DDP  V  TYEG H H
Sbjct: 1   LDDGYNWRKYGQKPVKGSPFPRSYYRCTSPGCPVKKQVERSSDDPQIVEITYEGEHNH 58

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	159
PF03106	60	WRKY: WRKY DNA -binding domain; InterPro: IPR00365	100.0
smart00774	59	WRKY DNA binding domain. The WRKY domain is a DNA	100.0
PF04500	62	FLYWCH: FLYWCH zinc finger domain; InterPro: IPR00	94.18
PF03101	91	FAR1: FAR1 DNA-binding domain; InterPro: IPR004330	94.12

>PF03106 WRKY: WRKY DNA -binding domain; InterPro: IPR003657 The WRKY domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger- like motif

Probab=100.00  E-value=2.8e-35  Score=201.62  Aligned_cols=60  Identities=60%  Similarity=1.224  Sum_probs=52.6

Q ss_pred             CCcchhhhhhccccccCCCCCCCccccccCCCCcccceeecCCCCcEEEEEEeccCCCCC
Q 031482           98 LDDGFKWRKYGKKMVKNSPNPRNYYKCSVDGCPVKKRVERDRDDPSYVITTYEGFHTHQS  157 (159)
Q Consensus        98 ~dDGy~WRKYGQK~Ikgs~~pRsYYrCs~~gC~akK~Vqr~~~dp~~~~~tY~G~Hnh~~  157 (159)
                      ++|||+|||||||.|+|+++||+||||++.+|+|+|+|||+.+|+.+|+|||+|+|||+.
T Consensus         1 ~~Dgy~WRKYGqK~i~g~~~pRsYYrCt~~~C~akK~Vqr~~~d~~~~~vtY~G~H~h~k   60 (60)
T PF03106_consen    1 LDDGYRWRKYGQKNIKGSPYPRSYYRCTHPGCPAKKQVQRSADDPNIVIVTYEGEHNHPK   60 (60)
T ss_dssp             --SSS-EEEEEEEEETTTTCEEEEEEEECTTEEEEEEEEEETTCCCEEEEEEES--SS--
T ss_pred             CCCCCchhhccCcccCCCceeeEeeeccccChhheeeEEEecCCCCEEEEEEeeeeCCCC
Confidence            589999999999999999999999999999999999999999999999999999999973

The WRKY domain is found in one or two copies in a superfamily of plant transcription factors involved in the regulation of various physiological programs that are unique to plants, including pathogen defence, senescence, trichome development and the biosynthesis of secondary metabolites. The WRKY domain binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core of the W box is essential for function and WRKY binding []. Some proteins known to contain a WRKY domain include Arabidopsis thaliana ZAP1 (Zinc-dependent Activator Protein-1) and AtWRKY44/TTG2, a protein involved in trichome development and anthocyanin pigmentation; and wild oat ABF1-2, two proteins involved in the gibberelic acid-induced expression of the alpha-Amy2 gene. Structural studies indicate that this domain is a four-stranded beta-sheet with a zinc binding pocket, forming a novel zinc and DNA binding structure []. The WRKYGQK residues correspond to the most N-terminal beta-strand, which enables extensive hydrophobic interactions, contributing to the structural stability of the beta-sheet.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2AYD_A 1WJ2_A 2LEX_A.

>smart00774 WRKY DNA binding domain

Probab=100.00  E-value=5.8e-34  Score=195.20  Aligned_cols=58  Identities=64%  Similarity=1.267  Sum_probs=56.6

Q ss_pred             CCcchhhhhhccccccCCCCCCCcccccc-CCCCcccceeecCCCCcEEEEEEeccCCC
Q 031482           98 LDDGFKWRKYGKKMVKNSPNPRNYYKCSV-DGCPVKKRVERDRDDPSYVITTYEGFHTH  155 (159)
Q Consensus        98 ~dDGy~WRKYGQK~Ikgs~~pRsYYrCs~-~gC~akK~Vqr~~~dp~~~~~tY~G~Hnh  155 (159)
                      ++|||+|||||||.|+|+++||+||||++ +||+|+|+|||+++|+.+++|||+|+|||
T Consensus         1 ~~DGy~WRKYGQK~ikgs~~pRsYYrCt~~~~C~a~K~Vq~~~~d~~~~~vtY~g~H~h   59 (59)
T smart00774        1 LDDGYQWRKYGQKVIKGSPFPRSYYRCTYSQGCPAKKQVQRSDDDPSVVEVTYEGEHTH   59 (59)
T ss_pred             CCCcccccccCcEecCCCcCcceEEeccccCCCCCcccEEEECCCCCEEEEEEeeEeCC
Confidence            47999999999999999999999999999 99999999999999999999999999998

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding.

>PF04500 FLYWCH: FLYWCH zinc finger domain; InterPro: IPR007588 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=94.18  E-value=0.013  Score=37.60  Aligned_cols=49  Identities=22%  Similarity=0.602  Sum_probs=24.7

Q ss_pred             cCCcchhhhhhccccccCCCCCCCccccccC---CCCcccceeecCCCCcEEEEEEeccCCC
Q 031482           97 ILDDGFKWRKYGKKMVKNSPNPRNYYKCSVD---GCPVKKRVERDRDDPSYVITTYEGFHTH  155 (159)
Q Consensus        97 ~~dDGy~WRKYGQK~Ikgs~~pRsYYrCs~~---gC~akK~Vqr~~~dp~~~~~tY~G~Hnh  155 (159)
                      ++-|||.-++....      ....|+||+..   +|+|+-.+.  .++..  ++...++|||
T Consensus        11 L~~~Gy~y~~~~~~------~~~~~WrC~~~~~~~C~a~~~~~--~~~~~--~~~~~~~HnH   62 (62)
T PF04500_consen   11 LVYDGYRYYFNKRN------DGKTYWRCSRRRSHGCRARLITD--AGDGR--VVRTNGEHNH   62 (62)
T ss_dssp             EEETTEEEEEEEE-------SS-EEEEEGGGTTS----EEEEE----TTE--EEE-S---SS
T ss_pred             EEECCeEEECcCCC------CCcEEEEeCCCCCCCCeEEEEEE--CCCCE--EEECCCccCC
Confidence            45688877655433      35579999973   899987776  33443  3455599998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a potential FLYWCH Zn-finger domain found in a number of eukaryotic proteins. FLYWCH is a C2H2-type zinc finger characterised by five conserved hydrophobic residues, containing the conserved sequence motif: F/Y-X(n)-L-X(n)-F/Y-X(n)-WXCX(6-12)CX(17-22)HXH where X indicates any amino acid. This domain was first characterised in Drosophila Modifier of mdg4 proteins, Mod(mgd4), putative chromatin modulators involved in higher order chromatin domains. Mod(mdg4) proteins share a common N-terminal BTB/POZ domain, but differ in their C-terminal region, most containing C-terminal FLYWCH zinc finger motifs []. The FLYWCH domain in Mod(mdg4) proteins has a putative role in protein-protein interactions; for example, Mod(mdg4)-67.2 interacts with DNA-binding protein Su(Hw) via its FLYWCH domain. FLYWCH domains have been described in other proteins as well, including suppressor of killer of prune, Su(Kpn), which contains 4 terminal FLYWCH zinc finger motifs in a tandem array and a C-terminal glutathione SH-transferase (GST) domain []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2RPR_A.

>PF03101 FAR1: FAR1 DNA-binding domain; InterPro: IPR004330 Phytochrome A is the primary photoreceptor for mediating various far-red light-induced responses in higher plants

Probab=94.12  E-value=0.054  Score=37.79  Aligned_cols=32  Identities=28%  Similarity=0.558  Sum_probs=28.3

Q ss_pred             CCCCcccceeecCCCCcEEEEEEeccCCCCCCC
Q 031482          127 DGCPVKKRVERDRDDPSYVITTYEGFHTHQSNP  159 (159)
Q Consensus       127 ~gC~akK~Vqr~~~dp~~~~~tY~G~Hnh~~~p  159 (159)
                      .||+|+=.|-+.. +....++.+..+|||+.-|
T Consensus        60 tgC~a~i~v~~~~-~~~w~v~~~~~~HNH~L~P   91 (91)
T PF03101_consen   60 TGCKARINVKRRK-DGKWRVTSFVLEHNHPLCP   91 (91)
T ss_pred             cCCCEEEEEEEcc-CCEEEEEECcCCcCCCCCC
Confidence            6999999998876 7778888999999999877

It has been found that the proteins governing this response, which include FAR-RED ELONGATED HYPOCOTYL3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1), are a pair of homologous proteins sharing significant sequence homology to mutator-like transposases. These proteins appear to be novel transcription factors, which are essential for activating the expression of FHY1 and FHL (for FHY1-like) and related genes, whose products are required for light-induced phytochrome A nuclear accumulation and subsequent light responses in plants. The FRS (FAR1 Related Sequences) family of proteins share a similar domain structure to mutator-like transposases, including an N-terminal C2H2 zinc finger domain, a central putative core transposase domain, and a C-terminal SWIM motif (named after SWI2/SNF and MuDR transposases). It seems plausible that the FRS family represent transcription factors derived from mutator-like transposases [, ]. This entry represents a domain found in FAR1 and FRS proteins. It contains a WRKY like fold and is therefore most likely a zinc binding DNA-binding domain.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	159
1wj2_A	78	Solution Structure Of The C-Terminal Wrky Domain Of		7e-20
2ayd_A	76	Crystal Structure Of The C-Terminal Wrky Domainof A		5e-19

>pdb|1WJ2|A Chain A, Solution Structure Of The C-Terminal Wrky Domain Of Atwrky4 Length = 78

Iteration: 1
 Score = 92.8 bits (229), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 39/68 (57%), Positives = 52/68 (76%)
Query: 88  AFKTKSDVEILDDGFKWRKYGKKMVKNSPNPRNYYKCSVDGCPVKKRVERDRDDPSYVIT 147
             +T S+V++LDDG++WRKYG+K+VK +P PR+YYKC+  GC V+K VER   DP  V+T
Sbjct: 7   GVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVT 66
Query: 148 TYEGFHTH 155
           TYEG H H
Sbjct: 67  TYEGKHNH 74

>pdb|2AYD|A Chain A, Crystal Structure Of The C-Terminal Wrky Domainof Atwrky1, An Sa-Induced And Partially Npr1-Dependent Transcription Factor Length = 76

Iteration: 1
 Score = 90.1 bits (222), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 40/74 (54%), Positives = 52/74 (70%)
Query: 86  RVAFKTKSDVEILDDGFKWRKYGKKMVKNSPNPRNYYKCSVDGCPVKKRVERDRDDPSYV 145
           R+   T++  +I++DG++WRKYG+K VK SP PR+YY+CS  GCPVKK VER   D   +
Sbjct: 2   RIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLL 61
Query: 146 ITTYEGFHTHQSNP 159
           ITTYEG H H   P
Sbjct: 62  ITTYEGKHDHDMPP 75

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	159
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	8e-43
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	6e-42

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A* Length = 78

 Score =  136 bits (343), Expect = 8e-43
 Identities = 39/72 (54%), Positives = 52/72 (72%)

Query: 84  KERVAFKTKSDVEILDDGFKWRKYGKKMVKNSPNPRNYYKCSVDGCPVKKRVERDRDDPS 143
                 +T S+V++LDDG++WRKYG+K+VK +P PR+YYKC+  GC V+K VER   DP 
Sbjct: 3   SGSSGVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPK 62

Query: 144 YVITTYEGFHTH 155
            V+TTYEG H H
Sbjct: 63  AVVTTYEGKHNH 74

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana} Length = 76

 Score =  133 bits (337), Expect = 6e-42
 Identities = 40/74 (54%), Positives = 52/74 (70%)

Query: 86  RVAFKTKSDVEILDDGFKWRKYGKKMVKNSPNPRNYYKCSVDGCPVKKRVERDRDDPSYV 145
           R+   T++  +I++DG++WRKYG+K VK SP PR+YY+CS  GCPVKK VER   D   +
Sbjct: 2   RIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLL 61

Query: 146 ITTYEGFHTHQSNP 159
           ITTYEG H H   P
Sbjct: 62  ITTYEGKHDHDMPP 75

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	159
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	100.0
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	100.0

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}

Probab=100.00  E-value=4.3e-39  Score=229.28  Aligned_cols=74  Identities=54%  Similarity=1.061  Sum_probs=72.1

Q ss_pred             ceeeEccCCcccCCcchhhhhhccccccCCCCCCCccccccCCCCcccceeecCCCCcEEEEEEeccCCCCCCC
Q 031482           86 RVAFKTKSDVEILDDGFKWRKYGKKMVKNSPNPRNYYKCSVDGCPVKKRVERDRDDPSYVITTYEGFHTHQSNP  159 (159)
Q Consensus        86 rv~~~t~s~~~~~dDGy~WRKYGQK~Ikgs~~pRsYYrCs~~gC~akK~Vqr~~~dp~~~~~tY~G~Hnh~~~p  159 (159)
                      |++++|.+++++++|||+|||||||.|||+++||+||||++.||+|+|+|||+.+|+.+++|||+|+|||+.|+
T Consensus         2 r~~v~t~~~~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~   75 (76)
T 2ayd_A            2 RIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMPP   75 (76)
T ss_dssp             EEEEEEECSSSCCCCSSCEEEEEEECCTTCSSCEEEEEECSTTCCCEEEEEECSSSTTEEEEEEESCCSSCCCC
T ss_pred             eEEEEecCCCCcCCCCchhhhCcccccCCCCCceeEeEcCCCCCCceeeEEEECCCCCEEEEEEccCcCCCCCC
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999885

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*

Probab=100.00  E-value=9.4e-39  Score=228.51  Aligned_cols=75  Identities=52%  Similarity=1.020  Sum_probs=69.6

Q ss_pred             cceeeEccCCcccCCcchhhhhhccccccCCCCCCCccccccCCCCcccceeecCCCCcEEEEEEeccCCCCCCC
Q 031482           85 ERVAFKTKSDVEILDDGFKWRKYGKKMVKNSPNPRNYYKCSVDGCPVKKRVERDRDDPSYVITTYEGFHTHQSNP  159 (159)
Q Consensus        85 ~rv~~~t~s~~~~~dDGy~WRKYGQK~Ikgs~~pRsYYrCs~~gC~akK~Vqr~~~dp~~~~~tY~G~Hnh~~~p  159 (159)
                      .+++++|.+++++++|||+|||||||.|||+++||+|||||++||+|+|+|||+.+|+.+++|||+|+|||+.|+
T Consensus         4 ~~~~~~t~s~~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~   78 (78)
T 1wj2_A            4 GSSGVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA   78 (78)
T ss_dssp             ----CCCCCCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred             ceEEEeccCCCCcCCCCchhhhCcccccCCCcCeeEEeecCcCCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCCC
Confidence            478999999999999999999999999999999999999999999999999999999999999999999999885

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	159
d1wj2a_	71	g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cr	9e-33

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 71

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  109 bits (273), Expect = 9e-33
 Identities = 39/68 (57%), Positives = 52/68 (76%)

Query: 90  KTKSDVEILDDGFKWRKYGKKMVKNSPNPRNYYKCSVDGCPVKKRVERDRDDPSYVITTY 149
           +T S+V++LDDG++WRKYG+K+VK +P PR+YYKC+  GC V+K VER   DP  V+TTY
Sbjct: 2   QTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTY 61

Query: 150 EGFHTHQS 157
           EG H H  
Sbjct: 62  EGKHNHDL 69

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	159
d1wj2a_	71	WRKY DNA-binding protein 4 {Thale cress (Arabidops	100.0

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=1.5e-38  Score=222.31  Aligned_cols=70  Identities=56%  Similarity=1.099  Sum_probs=67.2

Q ss_pred             eEccCCcccCCcchhhhhhccccccCCCCCCCccccccCCCCcccceeecCCCCcEEEEEEeccCCCCCC
Q 031482           89 FKTKSDVEILDDGFKWRKYGKKMVKNSPNPRNYYKCSVDGCPVKKRVERDRDDPSYVITTYEGFHTHQSN  158 (159)
Q Consensus        89 ~~t~s~~~~~dDGy~WRKYGQK~Ikgs~~pRsYYrCs~~gC~akK~Vqr~~~dp~~~~~tY~G~Hnh~~~  158 (159)
                      ++|.+++++++|||+|||||||.|+|+++||+||||++.||+|+|+|||+.+|+.+++|||+|+|||+.|
T Consensus         1 v~t~~~~~~~dDGy~WRKYGQK~ikgs~~pRsYYrCt~~~C~a~K~Vqr~~~d~~~~~vtY~G~H~h~~P   70 (71)
T d1wj2a_           1 VQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLP   70 (71)
T ss_dssp             CCCCCCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCC
T ss_pred             CccccccccCCCCcEecccCceeccCCCCceEEEEccccCCCCcceEEEEcCCCCEEEEEEeeEeCCCCC
Confidence            4677889999999999999999999999999999999999999999999999999999999999999887