Citrus Sinensis ID: 031504

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------16
Protein Sequence
MGGDWFKTFVCQKKVKVGSSKQVKGSSASAKSKGFKWKKPLGKESSIFAIGSTLGMPVEDVAAIRIQTAFRAYKARKTFRRLKGTIRLQGVSQRHSVQKQATTTLSYLHTWSKLQAEIRARRLCMVKEGRLRQKKLENQLKLDAKLNSLEVSTWTYHL
Secondary Structure (PSIPRED)
cccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccEcccccccc
Coil and Loop (DISEMBL)
mggdwfktfvcqkkvkvgsskqvkgssasakskgfkwkkplgkessifaigstlgmpveDVAAIRIQTAFRAYKARKTFRRLKGTIRLQGVSQRHSVQKQATTTLSYLHTWSKLQAEIRARRLCMVKEGRLRQKKLENQLKLDAKLNSLEVSTWTYHL
Flexible Loop (DISEMBL)
mggdwfktfvcqkkvkvgsskqvkgssasakskgfkwkkplgkESSIFAIGSTLGMPVEDVAAIRIQTAFRAYKARKTFRRLKgtirlqgvsqrhsvqkqatttlsylhtWSKLQAEIRARRLCMVKEgrlrqkklenqlkldaklnslevstwtyhl
Low Complexity Region (SEG)
MGGDWFKTFVCQkkvkvgsskqvkgssasakskgfkwkkPLGKESSIFAIGSTLGMPVEDVAAIRIQTAFRAYKARKTFRRLKGTIRLQGVSQRHSVQKQATTTLSYLHTWSKLQAEIRARRLCMVKEGRLRQKKLENQLKLDAKLNSLEVSTWTYHL
Disordered region (IsUnstruct)
****WFKTFVCQKKV*****************************SSIFAIGSTLGMPVEDVAAIRIQTAFRAYKARKTFRRLKGTIRLQGVSQRHSVQKQATTTLSYLHTWSKLQAEIRARRLCMVKEGRLR*******LKLDAKLNSLEVSTW****
Disordered Region (DISOPRED)
MGGDWFKT***************************************************DVAAIRIQTAFRAYKARKTFRRLKGTIRLQGVSQRHSVQKQATTTLSYLHTWSKLQAEIRARRL*****************************TWTY**
Disordered Region (DISEMBL)
MGGDWFKTFVCQKKV*********************WKKPLGKESSIFAIGSTLGMPVEDVAAIRIQTAFRAYKARKTFRRLKGTIRL*************TTTLSYLHTWSKLQAEIRARRLCMVKEGRLRQKKLENQLKLDAKLNSLEVSTWTYHL
Disordered Region (DISPRO)
***DWFKTFVCQKKV**************************************LGMPVEDVAAIRIQTAFRAYKARKTFRRLKGTIRLQGVSQRHSVQKQATTTLSYLHTWSKLQAEIRARRLCMVKEGRLRQKKLENQLKLDAKLNSLEVSTWT***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGGDWFKTFVCQKKVKVGSSKQVKGSSASAKSKGFKWKKPLGKESSIFAIGSTLGMPVEDVAAIRIQTAFRAYKARKTFRRLKGTIRLQGVSQRHSVQKQATTTLSYLHTWSKLQAEIRARRLCMVKEGRLRQKKLENQLKLDAKLNSLEVSTWTYHL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	158	2.2.26 [Sep-21-2011]
Q8LPG9	668	Protein IQ-DOMAIN 14 OS=A	no	no	0.493	0.116	0.397	5e-12
Q9SF32	454	Protein IQ-DOMAIN 1 OS=Ar	no	no	0.493	0.171	0.397	9e-09
Q8L4D8	587	Protein IQ-DOMAIN 31 OS=A	no	no	0.405	0.109	0.437	3e-06

>sp|Q8LPG9|IQD14_ARATH Protein IQ-DOMAIN 14 OS=Arabidopsis thaliana GN=IQD14 PE=1 SV=1

 Score = 70.1 bits (170), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 35/88 (39%), Positives = 57/88 (64%), Gaps = 10/88 (11%)

Query: 56  MPVEDVAAIRIQTAFRAYKARKTFRRLKGTIRLQGVSQRHSVQKQATTTLSYLHTWSKLQ 115
           +PV+  +A +IQ AFR Y ARK+FR LKG +RLQGV + +SV++Q    + Y+    ++Q
Sbjct: 318 LPVQHASATKIQGAFRGYMARKSFRALKGLVRLQGVVRGYSVKRQTINAMKYMQQVVRVQ 377

Query: 116 AEIRARRLCMVKEGRLRQKKLENQLKLD 143
           ++I++RR+          K LENQ +++
Sbjct: 378 SQIQSRRI----------KMLENQAQVE 395

May be involved in cooperative interactions with calmodulins or calmodulin-like proteins. May associate with nucleic acids and regulate gene expression at the transcriptional or post-transcriptional level.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SF32|IQD1_ARATH Protein IQ-DOMAIN 1 OS=Arabidopsis thaliana GN=IQD1 PE=1 SV=1

 Score = 59.3 bits (142), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 52/78 (66%)

Query: 59  EDVAAIRIQTAFRAYKARKTFRRLKGTIRLQGVSQRHSVQKQATTTLSYLHTWSKLQAEI 118
           E+ AAI IQ+ FR + AR+  + ++G  RL+ + +   VQ+QA  TL  + T S++Q++I
Sbjct: 107 EEAAAILIQSTFRGHLARRESQVMRGQERLKLLMEGSVVQRQAAITLKCMQTLSRVQSQI 166

Query: 119 RARRLCMVKEGRLRQKKL 136
           R+RR+ M +E + R K+L
Sbjct: 167 RSRRIRMSEENQARHKQL 184

Modulates expression of glucosinolate pathway genes. May associate with nucleic acids and regulate gene expression at the transcriptional or post-transcriptional level.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8L4D8|IQD31_ARATH Protein IQ-DOMAIN 31 OS=Arabidopsis thaliana GN=IQD31 PE=1 SV=1

 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 39/64 (60%)

Query: 60  DVAAIRIQTAFRAYKARKTFRRLKGTIRLQGVSQRHSVQKQATTTLSYLHTWSKLQAEIR 119
           ++AA  +Q AFR Y AR+ F  LKG IRLQ + + H V++QA  TL  +    +LQA  R
Sbjct: 113 EIAATSVQAAFRGYLARRAFWALKGIIRLQALIRGHLVRRQAVATLFSVMGIVRLQAFAR 172

Query: 120 ARRL 123
            R +
Sbjct: 173 GREI 176

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	158
224079131	312	predicted protein [Populus trichocarpa]	0.955	0.483	0.689	8e-54
118489299	312	unknown [Populus trichocarpa x Populus d	0.955	0.483	0.683	1e-52
224116948	312	predicted protein [Populus trichocarpa]	0.955	0.483	0.677	6e-50
255563056	310	calmodulin binding protein, putative [Ri	0.955	0.487	0.638	1e-47
225443514	306	PREDICTED: protein IQ-DOMAIN 1 [Vitis vi	0.955	0.493	0.632	2e-47
225461608	309	PREDICTED: protein IQ-DOMAIN 1 [Vitis vi	0.949	0.485	0.553	6e-37
147777594	309	hypothetical protein VITISV_013534 [Viti	0.949	0.485	0.547	3e-36
449434304	326	PREDICTED: protein IQ-DOMAIN 1-like [Cuc	0.955	0.463	0.558	4e-36
255642401	158	unknown [Glycine max]	0.955	0.955	0.544	5e-36
356555392	308	PREDICTED: protein IQ-DOMAIN 1-like [Gly	0.955	0.490	0.544	9e-36

>gi|224079131|ref|XP_002305760.1| predicted protein [Populus trichocarpa] gi|222848724|gb|EEE86271.1| predicted protein [Populus trichocarpa]

 Score =  214 bits (546), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 109/158 (68%), Positives = 129/158 (81%), Gaps = 7/158 (4%)

Query: 1   MG-GDWFKTFVCQKKVKVGSSKQVKGSSASAKSKGFKWKKPLGKESSIFAIGST------ 53
           MG GDWFKT +  KKVK  SSKQ KGS+ SAKS GFKWK  L KES+IFA GS+      
Sbjct: 1   MGSGDWFKTMISMKKVKDDSSKQPKGSTTSAKSNGFKWKNKLRKESAIFANGSSRANPRF 60

Query: 54  LGMPVEDVAAIRIQTAFRAYKARKTFRRLKGTIRLQGVSQRHSVQKQATTTLSYLHTWSK 113
           + MPVEDVAA +IQTAFRAY ARKT RRLKGT+RLQ +++ +SV+KQA TTL+Y+H+WS+
Sbjct: 61  IDMPVEDVAATQIQTAFRAYMARKTLRRLKGTVRLQIITKNYSVKKQAATTLNYIHSWSQ 120

Query: 114 LQAEIRARRLCMVKEGRLRQKKLENQLKLDAKLNSLEV 151
           +QA+IRARRLCMV E RLRQKKLENQLKL+AKL+ LEV
Sbjct: 121 IQAQIRARRLCMVTESRLRQKKLENQLKLEAKLHDLEV 158

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118489299|gb|ABK96454.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  211 bits (536), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 108/158 (68%), Positives = 127/158 (80%), Gaps = 7/158 (4%)

Query: 1   MGG-DWFKTFVCQKKVKVGSSKQVKGSSASAKSKGFKWKKPLGKESSIFAIGST------ 53
           MG  DWFKT +  KKVK  SSKQ KG + SAKS GFKWK  L KES+IFA GS+      
Sbjct: 1   MGSVDWFKTMISMKKVKDDSSKQPKGCTTSAKSNGFKWKNKLRKESAIFANGSSRANPRF 60

Query: 54  LGMPVEDVAAIRIQTAFRAYKARKTFRRLKGTIRLQGVSQRHSVQKQATTTLSYLHTWSK 113
           + MPVEDVAA +IQTAFRAY ARKT RRLKGT+RLQ +++ +SV+KQA TTL+YLH+WS+
Sbjct: 61  IDMPVEDVAATQIQTAFRAYMARKTLRRLKGTVRLQIITKNYSVKKQAATTLNYLHSWSQ 120

Query: 114 LQAEIRARRLCMVKEGRLRQKKLENQLKLDAKLNSLEV 151
           +QA+IRARRLCMV E RLRQKKLENQLKL+AKL+ LEV
Sbjct: 121 IQAQIRARRLCMVTESRLRQKKLENQLKLEAKLHDLEV 158

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224116948|ref|XP_002317436.1| predicted protein [Populus trichocarpa] gi|222860501|gb|EEE98048.1| predicted protein [Populus trichocarpa]

 Score =  201 bits (512), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 107/158 (67%), Positives = 123/158 (77%), Gaps = 7/158 (4%)

Query: 1   MG-GDWFKTFVCQKKVKVGSSKQVKGSSASAKSKGFKWKKPLGKESSIFAIGSTLG---- 55
           MG GDWFKT +  KKVK  SSKQ KGSS S KS GFKWK  L KES+ FA GS       
Sbjct: 1   MGSGDWFKTIISIKKVKDDSSKQAKGSSTSEKSNGFKWKHKLQKESASFANGSNRANPRF 60

Query: 56  --MPVEDVAAIRIQTAFRAYKARKTFRRLKGTIRLQGVSQRHSVQKQATTTLSYLHTWSK 113
             MPVED+AA RIQTAFRAY+ARKT R LKG +RLQ ++Q +S +KQA TTL+YLH+WS+
Sbjct: 61  PDMPVEDLAATRIQTAFRAYRARKTLRCLKGKVRLQIITQNYSFKKQAATTLNYLHSWSQ 120

Query: 114 LQAEIRARRLCMVKEGRLRQKKLENQLKLDAKLNSLEV 151
           +QA+IRARRL MV EGRLRQKKLENQLKL+AKL+ LEV
Sbjct: 121 IQAQIRARRLFMVTEGRLRQKKLENQLKLEAKLHDLEV 158

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255563056|ref|XP_002522532.1| calmodulin binding protein, putative [Ricinus communis] gi|223538223|gb|EEF39832.1| calmodulin binding protein, putative [Ricinus communis]

 Score =  194 bits (493), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 97/152 (63%), Positives = 119/152 (78%), Gaps = 1/152 (0%)

Query: 1   MG-GDWFKTFVCQKKVKVGSSKQVKGSSASAKSKGFKWKKPLGKESSIFAIGSTLGMPVE 59
           MG GDWFKT +  KKVK  SSK+VK SSA+AKS GFKWK    K+S+       L MPVE
Sbjct: 1   MGSGDWFKTIISLKKVKDDSSKRVKDSSAAAKSNGFKWKNQPRKKSATSCNPRVLDMPVE 60

Query: 60  DVAAIRIQTAFRAYKARKTFRRLKGTIRLQGVSQRHSVQKQATTTLSYLHTWSKLQAEIR 119
           D AA RIQTAFRAY ARK+  RLKG +RLQ ++Q +S++KQA TTL++LH+WSK+Q +IR
Sbjct: 61  DFAATRIQTAFRAYMARKSLHRLKGAVRLQNLTQNYSIKKQAATTLNHLHSWSKIQGQIR 120

Query: 120 ARRLCMVKEGRLRQKKLENQLKLDAKLNSLEV 151
            RR CMV+EGRLRQK+LENQLKL+A+L+ LEV
Sbjct: 121 DRRHCMVREGRLRQKRLENQLKLEAELHHLEV 152

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225443514|ref|XP_002272018.1| PREDICTED: protein IQ-DOMAIN 1 [Vitis vinifera] gi|297740471|emb|CBI30653.3| unnamed protein product [Vitis vinifera]

 Score =  193 bits (490), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 100/158 (63%), Positives = 122/158 (77%), Gaps = 7/158 (4%)

Query: 1   MG-GDWFKTFVCQKKVKVGSSKQVKGSSASAKSKGFKWKKPLGKESSIFAIGST------ 53
           MG GDWFK  +  KKVK  +S++ KG+S  AKS GFKW+    K S+ F+ GST      
Sbjct: 1   MGSGDWFKAILSSKKVKGDNSRKTKGTSTDAKSNGFKWRSRTLKGSTGFSYGSTSGNPGV 60

Query: 54  LGMPVEDVAAIRIQTAFRAYKARKTFRRLKGTIRLQGVSQRHSVQKQATTTLSYLHTWSK 113
           LG+PVED+AA RIQTAFRA+ ARKT RRLKG +RLQ ++Q   V+KQA+TTLSYL +WS+
Sbjct: 61  LGIPVEDIAATRIQTAFRAFMARKTLRRLKGIVRLQKLTQGDCVRKQASTTLSYLSSWSR 120

Query: 114 LQAEIRARRLCMVKEGRLRQKKLENQLKLDAKLNSLEV 151
           +Q +IRARRLCMV EGR+RQKKLENQLKLDAKL+ LEV
Sbjct: 121 IQTQIRARRLCMVTEGRIRQKKLENQLKLDAKLHDLEV 158

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225461608|ref|XP_002282973.1| PREDICTED: protein IQ-DOMAIN 1 [Vitis vinifera] gi|302142924|emb|CBI20219.3| unnamed protein product [Vitis vinifera]

 Score =  158 bits (400), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 88/159 (55%), Positives = 111/159 (69%), Gaps = 9/159 (5%)

Query: 1   MG-GDWFKTFVCQKKVKVGSSKQVKGSSASAKSKGFKWKKPLGKESSIFAIGSTLG---- 55
           MG G WFK  +  +KVK   SK  K  S + KS   K K  + KESS  A G+ LG    
Sbjct: 1   MGAGGWFKMIISLRKVKEDRSKPAKVHSTTEKSSNSKGKHHIDKESSSLANGA-LGKSAG 59

Query: 56  ---MPVEDVAAIRIQTAFRAYKARKTFRRLKGTIRLQGVSQRHSVQKQATTTLSYLHTWS 112
              +PVE+ AAI+IQT +RAYKARK   RL+GT+R Q ++Q   V+KQA+TTLSY+H WS
Sbjct: 60  VHKIPVEERAAIQIQTTYRAYKARKNLHRLRGTVRFQVMTQGDIVRKQASTTLSYIHAWS 119

Query: 113 KLQAEIRARRLCMVKEGRLRQKKLENQLKLDAKLNSLEV 151
           ++QA+I ARR CM +EGR+RQKKLENQLKL+AKL+ LEV
Sbjct: 120 RIQAQISARRHCMAQEGRVRQKKLENQLKLEAKLHELEV 158

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147777594|emb|CAN67034.1| hypothetical protein VITISV_013534 [Vitis vinifera]

 Score =  156 bits (394), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 87/159 (54%), Positives = 109/159 (68%), Gaps = 9/159 (5%)

Query: 1   MG-GDWFKTFVCQKKVKVGSSKQVKGSSASAKSKGFKWKKPLGKESSIFAIGSTLG---- 55
           MG G WFK  +  +KVK   SK  K  S + KS   K K    KE S  A G+ LG    
Sbjct: 1   MGAGGWFKMIISLRKVKXDRSKPAKVHSTTEKSSNSKGKHHTDKEXSSLANGA-LGKSAG 59

Query: 56  ---MPVEDVAAIRIQTAFRAYKARKTFRRLKGTIRLQGVSQRHSVQKQATTTLSYLHTWS 112
              +PVE+ AAI+IQT +RAYKARK   RL+GT+R Q ++Q   V+KQA+TTLSY+H WS
Sbjct: 60  VHKIPVEERAAIQIQTTYRAYKARKNLHRLRGTVRFQVMTQGDIVRKQASTTLSYIHAWS 119

Query: 113 KLQAEIRARRLCMVKEGRLRQKKLENQLKLDAKLNSLEV 151
           ++QA+I ARR CM +EGR+RQKKLENQLKL+AKL+ LEV
Sbjct: 120 RIQAQISARRHCMAQEGRVRQKKLENQLKLEAKLHELEV 158

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449434304|ref|XP_004134936.1| PREDICTED: protein IQ-DOMAIN 1-like [Cucumis sativus]

 Score =  155 bits (393), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 91/163 (55%), Positives = 112/163 (68%), Gaps = 12/163 (7%)

Query: 1   MG-GDWFKTFVCQKKVKVGSSKQVK-----GSSASAKSKGFKWKKPLGKESSIF----AI 50
           MG G WFK  +  KKVK  SSKQ K        A A+S    +     K+S  F    A 
Sbjct: 1   MGSGRWFKAVIRLKKVKTSSSKQTKLGLVFFKLALARSSFHLYAFANLKDSPRFKSDGAN 60

Query: 51  GST--LGMPVEDVAAIRIQTAFRAYKARKTFRRLKGTIRLQGVSQRHSVQKQATTTLSYL 108
           G++  L MP+EDVAA+RIQTA+RAY+ARK  R LKG  RLQ ++Q HSV+K AT+TL YL
Sbjct: 61  GNSKSLSMPIEDVAAVRIQTAYRAYRARKNLRLLKGAFRLQNLTQGHSVRKHATSTLGYL 120

Query: 109 HTWSKLQAEIRARRLCMVKEGRLRQKKLENQLKLDAKLNSLEV 151
           H+WS +QA+IRARRLCMV EGR RQK+LENQ KL+AKL+ +EV
Sbjct: 121 HSWSHIQAQIRARRLCMVTEGRQRQKRLENQRKLEAKLHDIEV 163

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255642401|gb|ACU21464.1| unknown [Glycine max]

 Score =  155 bits (392), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 86/158 (54%), Positives = 109/158 (68%), Gaps = 7/158 (4%)

Query: 1   MG-GDWFKTFVCQKKVKVGSSKQVKGSSASAKSKGFKWKKPLGKESSIFAIG------ST 53
           MG GDWFKT +  +K K G SK+ KG     K    K     GKESS    G       +
Sbjct: 1   MGSGDWFKTIISLRKSKEGRSKKAKGILTQEKLNASKSNNYPGKESSGLTNGIKSENLVS 60

Query: 54  LGMPVEDVAAIRIQTAFRAYKARKTFRRLKGTIRLQGVSQRHSVQKQATTTLSYLHTWSK 113
            G  VE +AA RIQTAFRAYKARK  RR+KG  +L+ +++  SV+KQA+T ++YLH+WSK
Sbjct: 61  AGASVETIAATRIQTAFRAYKARKALRRMKGFTKLKILTEGFSVKKQASTAVTYLHSWSK 120

Query: 114 LQAEIRARRLCMVKEGRLRQKKLENQLKLDAKLNSLEV 151
           +QAEIRARR+CMV E R+R+KKLE+QLKL+AKL+ LEV
Sbjct: 121 IQAEIRARRICMVTEDRIRRKKLESQLKLEAKLHDLEV 158

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356555392|ref|XP_003546016.1| PREDICTED: protein IQ-DOMAIN 1-like [Glycine max]

 Score =  154 bits (390), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 86/158 (54%), Positives = 110/158 (69%), Gaps = 7/158 (4%)

Query: 1   MG-GDWFKTFVCQKKVKVGSSKQVKGSSASAKSKGFKWKKPLGKESSIFAIG------ST 53
           MG GDWFKT +  +K K G SK+ KG     K    K     GKESS    G       +
Sbjct: 1   MGSGDWFKTIISLRKSKEGRSKKAKGILTQEKLNASKSNNYPGKESSGLTNGIKSENLVS 60

Query: 54  LGMPVEDVAAIRIQTAFRAYKARKTFRRLKGTIRLQGVSQRHSVQKQATTTLSYLHTWSK 113
            G+ VE +AA RIQTAFRAYKARK  RR+KG  +L+ +++  SV+KQA+T ++YLH+WSK
Sbjct: 61  AGVSVETIAATRIQTAFRAYKARKALRRMKGFTKLKILTEGFSVKKQASTAVTYLHSWSK 120

Query: 114 LQAEIRARRLCMVKEGRLRQKKLENQLKLDAKLNSLEV 151
           +QAEIRARR+CMV E R+R+KKLE+QLKL+AKL+ LEV
Sbjct: 121 IQAEIRARRICMVTEDRIRRKKLESQLKLEAKLHDLEV 158

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	158
TAIR|locus:2055430	263	iqd9 "AT2G33990" [Arabidopsis	0.651	0.391	0.576	3.2e-26
TAIR|locus:2086385	259	IQD10 "AT3G15050" [Arabidopsis	0.594	0.362	0.526	1.3e-20
TAIR|locus:2057459	416	IQD6 "AT2G26180" [Arabidopsis	0.537	0.204	0.476	4.1e-13
TAIR|locus:2090409	422	IQD5 "AT3G22190" [Arabidopsis	0.582	0.218	0.414	7.1e-13
TAIR|locus:2100504	430	IQD3 "AT3G52290" [Arabidopsis	0.563	0.206	0.393	1.6e-12
TAIR|locus:2097478	517	IQD13 "AT3G59690" [Arabidopsis	0.518	0.158	0.421	1.8e-12
TAIR|locus:2143503	461	iqd2 "AT5G03040" [Arabidopsis	0.518	0.177	0.439	3.8e-12
TAIR|locus:2043959	669	IQD14 "AT2G43680" [Arabidopsis	0.512	0.121	0.414	2e-11
TAIR|locus:2174088	403	IQD23 "AT5G62070" [Arabidopsis	0.506	0.198	0.419	3.4e-10
TAIR|locus:2130200	387	IQD19 "AT4G14750" [Arabidopsis	0.436	0.178	0.434	8.5e-10

TAIR|locus:2055430 iqd9 "AT2G33990" [Arabidopsis thaliana (taxid:3702)]

 Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
 Identities = 60/104 (57%), Positives = 80/104 (76%)

Query:    51 GSTLGMPVEDVAAIRIQTAFRAYKARKTFRRLKGTIRLQGVSQRHSVQKQATTTLSYLHT 110
             G++L    ED AA RIQTAF+AYKARK+ RRLKG  R +  +++ SV+ QA  TL YLH+
Sbjct:    38 GTSLVTRSEDWAATRIQTAFKAYKARKSLRRLKGIARAKLSTEKQSVKNQAVVTLRYLHS 97

Query:   111 WSKLQAEIRARRLCMVKEGRLRQKKLENQLKLDAKLNSLEVSTW 154
             WSK+Q+EI+ARR+CMV E RL+ K+LE+Q KL+AKL+ +EV  W
Sbjct:    98 WSKIQSEIKARRVCMVTEWRLKNKRLEHQQKLEAKLHDVEVE-W 140

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

GO:0048573 "photoperiodism, flowering" evidence=RCA

TAIR|locus:2086385 IQD10 "AT3G15050" [Arabidopsis thaliana (taxid:3702)]

 Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 50/95 (52%), Positives = 66/95 (69%)

Query:    60 DVAAIRIQTAFRAYKARKTFRRLKGTIRLQGVSQRHSVQKQATTTLSYLHTWSKLQAEIR 119
             +VA IRIQ AFRA+KARK    LK   R   + Q H+V  Q +T L+ +H+W  +Q +IR
Sbjct:    50 EVAVIRIQKAFRAFKARKRLCSLKSARRFNSLIQGHTVMNQTSTALNVIHSWYDIQNQIR 109

Query:   120 ARRLCMVKEGRLRQKKLENQLKLDAKLNSLEVSTW 154
             ARRL MV +GRL+ K+LEN+LKL+ KL+ LEV  W
Sbjct:   110 ARRLYMVTQGRLQHKRLENRLKLEIKLHELEVE-W 143

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2057459 IQD6 "AT2G26180" [Arabidopsis thaliana (taxid:3702)]

 Score = 179 (68.1 bits), Expect = 4.1e-13, P = 4.1e-13
 Identities = 41/86 (47%), Positives = 56/86 (65%)

Query:    59 EDVAAIRIQTAFRAYKARKTFRRLKGTIRLQGVSQRHSVQKQATTTLSYLHTWSKLQAEI 118
             E+ AAIRIQTAFR + AR+  R LKG +RLQ + +   V+KQA  TL  +    ++QA +
Sbjct:    83 EEWAAIRIQTAFRGFLARRALRALKGIVRLQALVRGRQVRKQAAVTLRCMQALVRVQARV 142

Query:   119 RARRLCMVKEGRLRQKKL-ENQLKLD 143
             RARR+ M  EG+  QK L E++ K D
Sbjct:   143 RARRVRMTVEGQAVQKLLDEHRTKSD 168

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2090409 IQD5 "AT3G22190" [Arabidopsis thaliana (taxid:3702)]

 Score = 177 (67.4 bits), Expect = 7.1e-13, P = 7.1e-13
 Identities = 39/94 (41%), Positives = 59/94 (62%)

Query:    59 EDVAAIRIQTAFRAYKARKTFRRLKGTIRLQGVSQRHSVQKQATTTLSYLHTWSKLQAEI 118
             E+ AA RIQTA+R + AR+  R LKG +RLQ + + H+V+KQA  TL  +    ++QA +
Sbjct:    87 ENRAATRIQTAYRGFLARRALRALKGLVRLQALVRGHAVRKQAAVTLRCMQALVRVQARV 146

Query:   119 RARR--LCMVKEGRLRQKKLENQLKLDAKLNSLE 150
             RARR  L +  E    Q+ L+ QL  +A++  +E
Sbjct:   147 RARRVRLALELESETSQQTLQQQLADEARVREIE 180

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2100504 IQD3 "AT3G52290" [Arabidopsis thaliana (taxid:3702)]

 Score = 174 (66.3 bits), Expect = 1.6e-12, P = 1.6e-12
 Identities = 35/89 (39%), Positives = 60/89 (67%)

Query:    55 GMPVEDVAAIRIQTAFRAYKARKTFRRLKGTIRLQGVSQRHSVQKQATTTLSYLHTWSKL 114
             G  +E++AAI+IQTAFR Y AR+  R L+G +RL+ + Q   V++QAT+TL  + T +++
Sbjct:   103 GKSMEEIAAIKIQTAFRGYMARRALRALRGLVRLKSLVQGKCVRRQATSTLQSMQTLARV 162

Query:   115 QAEIRARRLCMVKEGRLRQKKLENQLKLD 143
             Q +IR RRL + ++ +   ++L+ +   D
Sbjct:   163 QYQIRERRLRLSEDKQALTRQLQQKHNKD 191

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2097478 IQD13 "AT3G59690" [Arabidopsis thaliana (taxid:3702)]

 Score = 175 (66.7 bits), Expect = 1.8e-12, P = 1.8e-12
 Identities = 35/83 (42%), Positives = 56/83 (67%)

Query:    58 VEDVAAIRIQTAFRAYKARKTFRRLKGTIRLQGVSQRHSVQKQATTTLSYLHTWSKLQAE 117
             V++  AI+IQ AFR Y AR++FR LKG +RLQGV + HSV++Q    + Y+    ++Q +
Sbjct:   167 VKNAYAIKIQAAFRGYMARRSFRALKGLVRLQGVVRGHSVKRQTMNAMKYMQLLVRVQTQ 226

Query:   118 IRARRLCMVKEGRLRQKKLENQL 140
             +++RR+ M+ E R R  K + +L
Sbjct:   227 VQSRRIQML-ENRARNDKDDTKL 248

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2143503 iqd2 "AT5G03040" [Arabidopsis thaliana (taxid:3702)]

 Score = 171 (65.3 bits), Expect = 3.8e-12, P = 3.8e-12
 Identities = 36/82 (43%), Positives = 55/82 (67%)

Query:    55 GMPVEDVAAIRIQTAFRAYKARKTFRRLKGTIRLQGVSQRHSVQKQATTTLSYLHTWSKL 114
             G   E+ AAI IQT FR Y AR+  R ++G +RL+ + +   V++QA  TL  + T S++
Sbjct:   110 GKSNEEAAAILIQTIFRGYLARRALRAMRGLVRLKLLMEGSVVKRQAANTLKCMQTLSRV 169

Query:   115 QAEIRARRLCMVKEGRLRQKKL 136
             Q++IRARR+ M +E + RQK+L
Sbjct:   170 QSQIRARRIRMSEENQARQKQL 191

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0006007 "glucose catabolic process" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

TAIR|locus:2043959 IQD14 "AT2G43680" [Arabidopsis thaliana (taxid:3702)]

 Score = 167 (63.8 bits), Expect = 2.0e-11, P = 2.0e-11
 Identities = 34/82 (41%), Positives = 57/82 (69%)

Query:    56 MPVEDVAAIRIQTAFRAYKARKTFRRLKGTIRLQGVSQRHSVQKQATTTLSYLHTWSKLQ 115
             +PV+  +A +IQ AFR Y ARK+FR LKG +RLQGV + +SV++Q    + Y+    ++Q
Sbjct:   319 LPVQHASATKIQGAFRGYMARKSFRALKGLVRLQGVVRGYSVKRQTINAMKYMQQVVRVQ 378

Query:   116 AEIRARRLCMVKEGRLRQKKLE 137
             ++I++RR+ M+ E + + +K E
Sbjct:   379 SQIQSRRIKML-ENQAQVEKDE 399

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2174088 IQD23 "AT5G62070" [Arabidopsis thaliana (taxid:3702)]

 Score = 152 (58.6 bits), Expect = 3.4e-10, P = 3.4e-10
 Identities = 34/81 (41%), Positives = 50/81 (61%)

Query:    42 GKESSIFAIG-STLGMPVEDVAAIRIQTAFRAYKARKTFRRLKGTIRLQGVSQRHSVQKQ 100
             G  SS+F IG S      E++AA++IQ+AFR Y AR+  R LK  ++LQ + + H V+KQ
Sbjct:    98 GGNSSVFQIGRSNRRWAQENIAAMKIQSAFRGYLARRALRALKALVKLQALVRGHIVRKQ 157

Query:   101 ATTTLSYLHTWSKLQAEIRAR 121
                 L  + T  +LQ++ RAR
Sbjct:   158 TADMLRRMQTLVRLQSQARAR 178

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2130200 IQD19 "AT4G14750" [Arabidopsis thaliana (taxid:3702)]

 Score = 148 (57.2 bits), Expect = 8.5e-10, P = 8.5e-10
 Identities = 30/69 (43%), Positives = 46/69 (66%)

Query:    58 VEDVAAIRIQTAFRAYKARKTFRRLKGTIRLQGVSQRHSVQKQATTTLSYLHTWSKLQAE 117
             +E+ AAI+IQ  +R++ ARK  R LKG ++LQ + + H V+KQAT TL  +     LQA+
Sbjct:   103 IEEFAAIKIQACYRSHLARKALRALKGLVKLQALVRGHLVRKQATATLRCMQALITLQAK 162

Query:   118 IRARRLCMV 126
              R +R+ M+
Sbjct:   163 AREQRIRMI 171

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	158
PF00612	21	IQ: IQ calmodulin-binding motif; InterPro: IPR0000	98.29
KOG0160	862	consensus Myosin class V heavy chain [Cytoskeleton	97.98
smart00015	26	IQ Short calmodulin-binding motif containing conse	97.9
KOG0160	862	consensus Myosin class V heavy chain [Cytoskeleton	97.64
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.2
PTZ00014	821	myosin-A; Provisional	97.05
COG5022	1463	Myosin heavy chain [Cytoskeleton]	96.39
PF00612	21	IQ: IQ calmodulin-binding motif; InterPro: IPR0000	96.3
KOG2128	1401	consensus Ras GTPase-activating protein family - I	96.21
KOG0164	1001	consensus Myosin class I heavy chain [Cytoskeleton	96.16
smart00015	26	IQ Short calmodulin-binding motif containing conse	94.85
PTZ00014	821	myosin-A; Provisional	94.29
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	93.03
KOG4427	1096	consensus E3 ubiquitin protein ligase [Posttransla	89.93
KOG0942	1001	consensus E3 ubiquitin protein ligase [Posttransla	87.31
KOG2128	1401	consensus Ras GTPase-activating protein family - I	85.42
KOG0162	1106	consensus Myosin class I heavy chain [Cytoskeleton	83.63
KOG0520	975	consensus Uncharacterized conserved protein, conta	81.99
KOG0377	631	consensus Protein serine/threonine phosphatase RDG	81.27

>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K

Probab=98.29  E-value=7.8e-07  Score=48.57  Aligned_cols=21  Identities=48%  Similarity=0.680  Sum_probs=19.0

Q ss_pred             HHHHHHHHHHhhchHHHHHHH
Q 031504           60 DVAAIRIQTAFRAYKARKTFR   80 (158)
Q Consensus        60 ~~AAi~IQsa~RGylaRr~~~   80 (158)
                      +.||+.||+.||||++|+.|+
T Consensus         1 ~~aai~iQ~~~R~~~~Rk~~k   21 (21)
T PF00612_consen    1 RKAAIIIQSYWRGYLARKRYK   21 (21)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHhcC
Confidence            469999999999999999884

The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....

>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]

Probab=97.98  E-value=3e-05  Score=75.53  Aligned_cols=61  Identities=28%  Similarity=0.292  Sum_probs=44.5

Q ss_pred             hHHHHHHHHHHHhhchHHHHHHHhhh-hhHHHHhhhhcHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 031504           58 VEDVAAIRIQTAFRAYKARKTFRRLK-GTIRLQGVSQRHSVQKQATTTLSYLHTWSKLQAEIRARR  122 (158)
Q Consensus        58 re~~AAi~IQsa~RGylaRr~~~~lk-~ivrLQal~RG~lvRkq~~~~lr~~~A~vkIQs~iRgr~  122 (158)
                      ....+++.||+.+|||+.|+.|..++ +++.||+++||+++|+..   . ...|++.||+.+|++.
T Consensus       671 vl~~~~~~iq~~~r~~~~r~~f~~~r~~~~~~Q~~~rG~~~r~~~---~-~~~aai~~q~~~r~~~  732 (862)
T KOG0160|consen  671 VLSAAKVLIQRQIRGYLARKKFLQLRSAVIIIQAYSRGVLARRET---E-REAAAIGIQKECRSYL  732 (862)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhh---H-HHHHHHHhHHHHHHHH
Confidence            34567888999999999999999666 788999999999999811   1 2334445555544443

>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues

Probab=97.90  E-value=1.1e-05  Score=45.95  Aligned_cols=22  Identities=50%  Similarity=0.662  Sum_probs=20.0

Q ss_pred             HHHHHHHHHHHhhchHHHHHHH
Q 031504           59 EDVAAIRIQTAFRAYKARKTFR   80 (158)
Q Consensus        59 e~~AAi~IQsa~RGylaRr~~~   80 (158)
                      .+.||+.||+.||||++|+.|.
T Consensus         2 ~~~aa~~IQa~~Rg~~~r~~y~   23 (26)
T smart00015        2 LTRAAIIIQAAWRGYLARKRYK   23 (26)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhh
Confidence            4689999999999999999984

Calmodulin-binding motif.

>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]

Probab=97.64  E-value=0.00025  Score=69.29  Aligned_cols=66  Identities=20%  Similarity=0.092  Sum_probs=57.5

Q ss_pred             hhHHHHHHHHHHHhhchHHHHHHHhhhhhHHHHhhhhcHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 031504           57 PVEDVAAIRIQTAFRAYKARKTFRRLKGTIRLQGVSQRHSVQKQATTTLSYLHTWSKLQAEIRARRLCM  125 (158)
Q Consensus        57 ~re~~AAi~IQsa~RGylaRr~~~~lk~ivrLQal~RG~lvRkq~~~~lr~~~A~vkIQs~iRgr~~Rm  125 (158)
                      +....+++.||+.+||+++|+....-.+++.+|..+|+++.|++|....   .+++.||+.+|+..+|-
T Consensus       693 ~~~r~~~~~~Q~~~rG~~~r~~~~~~~aai~~q~~~r~~~~r~~y~~~~---~~~~~~qs~~r~~~~r~  758 (862)
T KOG0160|consen  693 LQLRSAVIIIQAYSRGVLARRETEREAAAIGIQKECRSYLNRRRYRALI---PASITIQSGVRAMLARN  758 (862)
T ss_pred             HHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhcc
Confidence            5677899999999999999984444457899999999999999995444   89999999999999887

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.20  E-value=0.00031  Score=69.21  Aligned_cols=71  Identities=25%  Similarity=0.359  Sum_probs=59.0

Q ss_pred             hHHHHHHHHHHHhhchHHHHHHHhhh-hhHHHHhhhhcHHHHHHHHHH-------HHHHhHHHHHHHHHHHHHHhhhHH
Q 031504           58 VEDVAAIRIQTAFRAYKARKTFRRLK-GTIRLQGVSQRHSVQKQATTT-------LSYLHTWSKLQAEIRARRLCMVKE  128 (158)
Q Consensus        58 re~~AAi~IQsa~RGylaRr~~~~lk-~ivrLQal~RG~lvRkq~~~~-------lr~~~A~vkIQs~iRgr~~Rm~~e  128 (158)
                      ....||..||.-||||+.|+.|..++ -+|++|+.+||+.+|++|...       -.-+.+|=.+|.-+||+..+-..|
T Consensus       808 ~~~~aa~~iq~~f~~yk~r~~~l~tr~p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~~e  886 (975)
T KOG0520|consen  808 SDPAAASRIQKKFRGYKQRKEFLSTRQPIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRALFE  886 (975)
T ss_pred             cchhHHHHhhhhhhhHHhhhhhcccCCccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccchh
Confidence            34568999999999999999999766 699999999999999999721       122678889999999998776543

>PTZ00014 myosin-A; Provisional

Probab=97.05  E-value=0.00071  Score=65.85  Aligned_cols=41  Identities=20%  Similarity=0.260  Sum_probs=33.5

Q ss_pred             HHHHHHHHHhhchHHHHHHHhh-hhhHHHHhhhhcHHHHHHH
Q 031504           61 VAAIRIQTAFRAYKARKTFRRL-KGTIRLQGVSQRHSVQKQA  101 (158)
Q Consensus        61 ~AAi~IQsa~RGylaRr~~~~l-k~ivrLQal~RG~lvRkq~  101 (158)
                      ..++.||++||||++|+.|..+ .+++.||+.+||+++++..
T Consensus       778 ~~~~~iq~~~r~~~~r~~~~~~~~~~~~iQ~~~R~~l~~~~~  819 (821)
T PTZ00014        778 PLVSVLEALILKIKKKRKVRKNIKSLVRIQAHLRRHLVIAEI  819 (821)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            3678899999999999998854 4788889999998888753

>COG5022 Myosin heavy chain [Cytoskeleton]

Probab=96.39  E-value=0.015  Score=59.55  Aligned_cols=65  Identities=23%  Similarity=0.223  Sum_probs=52.7

Q ss_pred             hHHHHHHHHHHHhhchHHHHHHH-hhhhhHHHHhhhhcHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 031504           58 VEDVAAIRIQTAFRAYKARKTFR-RLKGTIRLQGVSQRHSVQKQATTTLSYLHTWSKLQAEIRARRL  123 (158)
Q Consensus        58 re~~AAi~IQsa~RGylaRr~~~-~lk~ivrLQal~RG~lvRkq~~~~lr~~~A~vkIQs~iRgr~~  123 (158)
                      .-...++.||++|||+..|++|. .++.+..+|...+|..+++.+...+ -..+.+++|..+|....
T Consensus       743 ~~~~~~~~iq~aiR~~~~rrr~~~~~k~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~  808 (1463)
T COG5022         743 KLDNIATRIQRAIRGRYLRRRYLQALKRIKKIQVIQHGFRLRRLVDYEL-KWRLFIKLQPLLSLLGS  808 (1463)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcccch-HHHhHHHhhHHhHHHhh
Confidence            34568999999999999999999 7778999999999999997764333 34677999999886543

>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K

Probab=96.30  E-value=0.0036  Score=33.88  Aligned_cols=19  Identities=21%  Similarity=0.137  Sum_probs=14.9

Q ss_pred             hhhHHHHhhhhcHHHHHHH
Q 031504           83 KGTIRLQGVSQRHSVQKQA  101 (158)
Q Consensus        83 k~ivrLQal~RG~lvRkq~  101 (158)
                      +++|.||+.+||+++|++|
T Consensus         2 ~aai~iQ~~~R~~~~Rk~~   20 (21)
T PF00612_consen    2 KAAIIIQSYWRGYLARKRY   20 (21)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhc
Confidence            3577888888888888876

The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....

>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]

Probab=96.21  E-value=0.012  Score=60.14  Aligned_cols=72  Identities=18%  Similarity=0.212  Sum_probs=55.0

Q ss_pred             CCchh-HHHHHHHHHHHhhchHH---HHHHH--hhhhhHHHHhhhhcHHHHHHHHHHH----HHHhHHHHHHHHHHHHHH
Q 031504           54 LGMPV-EDVAAIRIQTAFRAYKA---RKTFR--RLKGTIRLQGVSQRHSVQKQATTTL----SYLHTWSKLQAEIRARRL  123 (158)
Q Consensus        54 ~~~~r-e~~AAi~IQsa~RGyla---Rr~~~--~lk~ivrLQal~RG~lvRkq~~~~l----r~~~A~vkIQs~iRgr~~  123 (158)
                      ++.+. .....+.||.+||||+.   +..|.  ..+.++.+|++.||+++|+.+...+    .++.+++.||+.+|++..
T Consensus       558 ~~fl~~~~P~~~diq~~vr~~~~~~~~~~~~~~~~~evv~~qs~~R~~lsrk~~~~~~q~~~~~~~~~i~iqs~~r~f~~  637 (1401)
T KOG2128|consen  558 LDFLKKQTPFVVDIQALVRGILQYIPRDVYLDSAKKEVVKFQSLTRGALSRKKYSRKLQYFKDNMTKIIKIQSKIRKFPN  637 (1401)
T ss_pred             hhHHHhcCchHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHHHHHHHHHhccc
Confidence            44444 55678999999999995   22222  3346999999999999999887444    458999999999999965


Q ss_pred             hh
Q 031504          124 CM  125 (158)
Q Consensus       124 Rm  125 (158)
                      |-
T Consensus       638 r~  639 (1401)
T KOG2128|consen  638 RK  639 (1401)
T ss_pred             ch
Confidence            44

>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]

Probab=96.16  E-value=0.013  Score=57.11  Aligned_cols=26  Identities=31%  Similarity=0.511  Sum_probs=22.8

Q ss_pred             HHHHHHHHHHHhhchHHHHHHHhhhh
Q 031504           59 EDVAAIRIQTAFRAYKARKTFRRLKG   84 (158)
Q Consensus        59 e~~AAi~IQsa~RGylaRr~~~~lk~   84 (158)
                      .-.-|+.||++|||+++|.+|+.|++
T Consensus       695 l~~lvtllQK~~RG~~~R~ry~rmka  720 (1001)
T KOG0164|consen  695 LPSLVTLLQKAWRGWLARQRYRRMKA  720 (1001)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34578999999999999999998884

>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues

Probab=94.85  E-value=0.023  Score=32.01  Aligned_cols=19  Identities=16%  Similarity=0.151  Sum_probs=15.9

Q ss_pred             hhhHHHHhhhhcHHHHHHH
Q 031504           83 KGTIRLQGVSQRHSVQKQA  101 (158)
Q Consensus        83 k~ivrLQal~RG~lvRkq~  101 (158)
                      +.++.||+.+||+++|+.|
T Consensus         4 ~aa~~IQa~~Rg~~~r~~y   22 (26)
T smart00015        4 RAAIIIQAAWRGYLARKRY   22 (26)
T ss_pred             HHHHHHHHHHHHHHHHHhh
Confidence            4678889999999998887

Calmodulin-binding motif.

>PTZ00014 myosin-A; Provisional

Probab=94.29  E-value=0.11  Score=50.83  Aligned_cols=39  Identities=10%  Similarity=0.181  Sum_probs=33.7

Q ss_pred             hhHHHHhhhhcHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 031504           84 GTIRLQGVSQRHSVQKQATTTLSYLHTWSKLQAEIRARRLCM  125 (158)
Q Consensus        84 ~ivrLQal~RG~lvRkq~~~~lr~~~A~vkIQs~iRgr~~Rm  125 (158)
                      .++.||+.+||+++|+.|...   .++++.||+.+|++..+.
T Consensus       779 ~~~~iq~~~r~~~~r~~~~~~---~~~~~~iQ~~~R~~l~~~  817 (821)
T PTZ00014        779 LVSVLEALILKIKKKRKVRKN---IKSLVRIQAHLRRHLVIA  817 (821)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHh
Confidence            467899999999999999544   579999999999998764

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=93.03  E-value=0.28  Score=52.19  Aligned_cols=37  Identities=22%  Similarity=0.179  Sum_probs=34.4

Q ss_pred             hHHHHhhhhcHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 031504           85 TIRLQGVSQRHSVQKQATTTLSYLHTWSKLQAEIRAR  121 (158)
Q Consensus        85 ivrLQal~RG~lvRkq~~~~lr~~~A~vkIQs~iRgr  121 (158)
                      |+.|||.||||++|+.|......+.|+..||..+|.+
T Consensus       776 i~~fQA~~Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~~  812 (1930)
T KOG0161|consen  776 ITLFQAAIRGYLARKEFKKRLQQLDAIKVIQRNIRAY  812 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6888999999999999998888899999999999988

>KOG4427 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=89.93  E-value=0.28  Score=48.49  Aligned_cols=24  Identities=33%  Similarity=0.447  Sum_probs=21.7

Q ss_pred             hhHHHHHHHHHHHhhchHHHHHHH
Q 031504           57 PVEDVAAIRIQTAFRAYKARKTFR   80 (158)
Q Consensus        57 ~re~~AAi~IQsa~RGylaRr~~~   80 (158)
                      -|++.||+.||..||||++|+.|.
T Consensus        27 rrr~~aa~~iq~~lrsyl~Rkk~~   50 (1096)
T KOG4427|consen   27 RRREAAALFIQRVLRSYLVRKKAQ   50 (1096)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            466789999999999999999987

>KOG0942 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=87.31  E-value=0.4  Score=47.81  Aligned_cols=26  Identities=19%  Similarity=0.480  Sum_probs=22.4

Q ss_pred             hhHHHHHHHHHHHhhchHHHHHHHhh
Q 031504           57 PVEDVAAIRIQTAFRAYKARKTFRRL   82 (158)
Q Consensus        57 ~re~~AAi~IQsa~RGylaRr~~~~l   82 (158)
                      .+++.+|+.||+.||||++|+..+.+
T Consensus        26 rk~e~~av~vQs~~Rg~~~r~~~~~~   51 (1001)
T KOG0942|consen   26 RKQEKNAVKVQSFWRGFRVRHNQKLL   51 (1001)
T ss_pred             HHHhccchHHHHHHHHHHHHHHHHHH
Confidence            56678999999999999999987743

>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]

Probab=85.42  E-value=1.5  Score=45.45  Aligned_cols=59  Identities=20%  Similarity=0.101  Sum_probs=44.1

Q ss_pred             HHHHHhhchHHHHHHHhhh--------hhHHHHhhhhcHHHHHHHH----HHHHHHhHHHHHHHHHHHHHHhhh
Q 031504           65 RIQTAFRAYKARKTFRRLK--------GTIRLQGVSQRHSVQKQAT----TTLSYLHTWSKLQAEIRARRLCMV  126 (158)
Q Consensus        65 ~IQsa~RGylaRr~~~~lk--------~ivrLQal~RG~lvRkq~~----~~lr~~~A~vkIQs~iRgr~~Rm~  126 (158)
                      +||+-.|||..|..+....        .++-+|+++||++.   +.    .-.....-++++|+..|+...|-.
T Consensus       540 ~~qa~~rg~~~r~~~~~~~~fl~~~~P~~~diq~~vr~~~~---~~~~~~~~~~~~~evv~~qs~~R~~lsrk~  610 (1401)
T KOG2128|consen  540 RIQASERGFSTRNKFRSRLDFLKKQTPFVVDIQALVRGILQ---YIPRDVYLDSAKKEVVKFQSLTRGALSRKK  610 (1401)
T ss_pred             hhhhhccccchHHHHHhhhhHHHhcCchHHHHHHHHHHHhh---hchHHHHHHHhhHHHHHHHHHHHHHHHHhh
Confidence            4599999999998877443        37888999999996   22    222235678999999999888764

>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]

Probab=83.63  E-value=0.91  Score=44.97  Aligned_cols=38  Identities=21%  Similarity=0.404  Sum_probs=27.7

Q ss_pred             HHHHHHHHHhhchHHHHHHHhhhh-hHHHHhhhhcHHHHHHH
Q 031504           61 VAAIRIQTAFRAYKARKTFRRLKG-TIRLQGVSQRHSVQKQA  101 (158)
Q Consensus        61 ~AAi~IQsa~RGylaRr~~~~lk~-ivrLQal~RG~lvRkq~  101 (158)
                      .=|.+||.+||.|++|+.|-.++. ...   +.-|.-.|+.+
T Consensus       697 ~~A~~IQkAWRrfv~rrky~k~ree~t~---ll~gKKeRRr~  735 (1106)
T KOG0162|consen  697 GMARRIQKAWRRFVARRKYEKMREEATK---LLLGKKERRRY  735 (1106)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhcchHHHHHH
Confidence            368999999999999999998872 232   23355555555

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=81.99  E-value=2.4  Score=42.63  Aligned_cols=64  Identities=19%  Similarity=0.219  Sum_probs=46.5

Q ss_pred             HHHHHHHHHhhchHHHHHHHhhh-h----------hHHHHhhhhcHHHHHHHH----------------------HHHHH
Q 031504           61 VAAIRIQTAFRAYKARKTFRRLK-G----------TIRLQGVSQRHSVQKQAT----------------------TTLSY  107 (158)
Q Consensus        61 ~AAi~IQsa~RGylaRr~~~~lk-~----------ivrLQal~RG~lvRkq~~----------------------~~lr~  107 (158)
                      .-++.||+++|||-.|+.|..+- +          .-++|+-+||+..|..+.                      ...+-
T Consensus       834 ~p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~~e~~~~a~t~~e~~yd~yKq~~~~~~~r~  913 (975)
T KOG0520|consen  834 QPIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRALFEEQETAATVIEDCYDFYKQLRKQTEERL  913 (975)
T ss_pred             CccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccchhccccccchHHHHHHHHHHHHHHHHHHH
Confidence            34789999999999999998442 1          244588888887765221                      22233


Q ss_pred             HhHHHHHHHHHHHHHHh
Q 031504          108 LHTWSKLQAEIRARRLC  124 (158)
Q Consensus       108 ~~A~vkIQs~iRgr~~R  124 (158)
                      -+|+++||+.+|....+
T Consensus       914 ~~A~~~VQsm~rs~~a~  930 (975)
T KOG0520|consen  914 TRAVVRVQSMFRSPKAQ  930 (975)
T ss_pred             HHHHHHHHHHhcCHHHH
Confidence            68999999999988777

>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]

Probab=81.27  E-value=2.2  Score=40.22  Aligned_cols=35  Identities=34%  Similarity=0.246  Sum_probs=27.2

Q ss_pred             hhHHHHHHHHHHHhhchHHHHHHHhhhhhHHHHhh
Q 031504           57 PVEDVAAIRIQTAFRAYKARKTFRRLKGTIRLQGV   91 (158)
Q Consensus        57 ~re~~AAi~IQsa~RGylaRr~~~~lk~ivrLQal   91 (158)
                      .+--+||+.||..+|+|.||.+.++.-.-..+|++
T Consensus        14 ~raikaAilIQkWYRr~~ARle~rrr~twqIFqsl   48 (631)
T KOG0377|consen   14 TRAIKAAILIQKWYRRYEARLEARRRCTWQIFQSL   48 (631)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHH
Confidence            44568999999999999999988765555555654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	158
2ycu_A	995	Non muscle myosin 2C, alpha-actinin; motor protein	3e-04
4dck_A	168	Sodium channel protein type 5 subunit alpha; IQ-mo	4e-04
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	5e-04
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	5e-04
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	9e-04

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995

 Score = 39.3 bits (92), Expect = 3e-04
 Identities = 12/96 (12%), Positives = 31/96 (32%), Gaps = 3/96 (3%)

Query: 62  AAIRIQTAFRAYKA---RKTFRRLKGTIRLQGVSQRHSVQKQATTTLSYLHTWSKLQAEI 118
           +   +Q+   A+K     +   + +    L+ +      + +      ++        EI
Sbjct: 789 SIESVQSFMNAHKEYKKTEKPPKGQEVSELEAIYNSLQTKLRLIKREPFVAPAGLTPNEI 848

Query: 119 RARRLCMVKEGRLRQKKLENQLKLDAKLNSLEVSTW 154
            +    + K  +   + L  +LK   K+  L     
Sbjct: 849 DSTWSALEKAEQEHAEALRIELKRQKKIAVLLQKYN 884

>4dck_A Sodium channel protein type 5 subunit alpha; IQ-motif, EF-hand, voltage-gated sodium channel regulation, CTD binds to FGF13 and CAM. CAM binds to Ca2+.; 2.20A {Homo sapiens} PDB: 2kbi_A Length = 168

 Score = 37.7 bits (87), Expect = 4e-04
 Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 3/65 (4%)

Query: 36  KWKKPLGKESSIFAIGSTLGMPVEDVAAIRIQTAFRAYKARKTFRRLKGTIRLQGVSQRH 95
           K+      + S   I +TL    E+V+A+ IQ AFR +  +++ +      R Q      
Sbjct: 106 KFMAANPSKISYEPITTTLRRKHEEVSAMVIQRAFRRHLLQRSLKHASFLFRQQ---AGS 162

Query: 96  SVQKQ 100
            + ++
Sbjct: 163 GLSEE 167

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010

 Score = 38.5 bits (90), Expect = 5e-04
 Identities = 13/97 (13%), Positives = 31/97 (31%), Gaps = 3/97 (3%)

Query: 61  VAAIRIQTAFRAYKARKTFRRL---KGTIRLQGVSQRHSVQKQATTTLSYLHTWSKLQAE 117
            +   +Q+   A+K  K   +    +    L+ +      + +      ++        E
Sbjct: 796 DSIESVQSFMNAHKEYKKTEKPPKGQEVSELEAIYNSLQTKLRLIKREPFVAPAGLTPNE 855

Query: 118 IRARRLCMVKEGRLRQKKLENQLKLDAKLNSLEVSTW 154
           I +    + K  +   + L  +LK   K+  L     
Sbjct: 856 IDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQKYN 892

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 38.6 bits (90), Expect = 5e-04
 Identities = 18/89 (20%), Positives = 30/89 (33%), Gaps = 1/89 (1%)

Query: 62  AAIRIQTAFRAYKARKTFRRLKGTIRLQGVSQRHSVQKQATTTLSYLHTWSKLQAEIRAR 121
           AAI IQ   R Y  RK ++ ++          R  + +     +   H    +Q  +R  
Sbjct: 818 AAIIIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRG- 876

Query: 122 RLCMVKEGRLRQKKLENQLKLDAKLNSLE 150
            L  V   R  +  +  Q      +   E
Sbjct: 877 WLARVHYHRTLKAIVYLQCCYRRMMAKRE 905

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 36.9 bits (84), Expect = 9e-04
 Identities = 9/29 (31%), Positives = 15/29 (51%), Gaps = 10/29 (34%)

Query: 132 RQ--KKLENQLKL---DA----KLN-SLE 150
           +Q  KKL+  LKL   D+     +  ++E
Sbjct: 19  KQALKKLQASLKLYADDSAPALAIKATME 47

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	158
2ix7_C	58	Myosin-5A; contractIle protein/metal binding, acti	99.32
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	99.17
1n2d_C	48	IQ2 and IQ3 motifs from MYO2P, A class V myosin; p	99.06
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	99.03
1n2d_C	48	IQ2 and IQ3 motifs from MYO2P, A class V myosin; p	98.54
2ix7_C	58	Myosin-5A; contractIle protein/metal binding, acti	98.27
2bl0_A	63	Major plasmodial myosin heavy chain; muscle protei	97.95
1wdc_A	64	Scallop myosin; calcium binding protein, muscle pr	97.94
2l53_B	31	CAM, voltage-gated sodium channel type V alpha iso	97.93
2kxw_B	27	Sodium channel protein type 2 subunit alpha; actio	97.89
1wdc_A	64	Scallop myosin; calcium binding protein, muscle pr	97.66
2bl0_A	63	Major plasmodial myosin heavy chain; muscle protei	97.56
1kk8_A	837	Myosin heavy chain, striated muscle; actin-detache	97.48
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	97.26
3gn4_A	148	Myosin-VI; unconventional myosin, motility, lever	96.81
1kk8_A	837	Myosin heavy chain, striated muscle; actin-detache	96.56
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	96.52
4dck_A	168	Sodium channel protein type 5 subunit alpha; IQ-mo	93.73
1w7j_A	795	Myosin VA; motor protein, unconventional myosin, m	93.64
4anj_A	1052	Unconventional myosin-VI, green fluorescent prote;	91.43
3gn4_A	148	Myosin-VI; unconventional myosin, motility, lever	82.7

>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}

Probab=99.32  E-value=2.9e-12  Score=84.09  Aligned_cols=53  Identities=23%  Similarity=0.219  Sum_probs=45.7

Q ss_pred             hHHHHHHHHHHHhhchHHHHHHHhhh-hhHHHHhhhhcHHHHHHHHHHHHHHhHH
Q 031504           58 VEDVAAIRIQTAFRAYKARKTFRRLK-GTIRLQGVSQRHSVQKQATTTLSYLHTW  111 (158)
Q Consensus        58 re~~AAi~IQsa~RGylaRr~~~~lk-~ivrLQal~RG~lvRkq~~~~lr~~~A~  111 (158)
                      +.+.||+.||+.||||++|+.|..++ +++.||+.+||+++|+.+.. ++..+|+
T Consensus         3 ~~~~aai~IQ~~~Rg~~~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~~~-~r~~~aA   56 (58)
T 2ix7_C            3 KLRAACIRIQKTIRGWLLRKRYLCMQRAAITVQRYVRGYQARCYAKF-LRRTKAA   56 (58)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCc
Confidence            46789999999999999999999777 89999999999999999944 4444554

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=99.17  E-value=3.6e-11  Score=116.56  Aligned_cols=68  Identities=25%  Similarity=0.234  Sum_probs=48.8

Q ss_pred             hhHHHHHHHHHHHhhchHHHHHHHhhh-hhHHHHhhhhcHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 031504           57 PVEDVAAIRIQTAFRAYKARKTFRRLK-GTIRLQGVSQRHSVQKQATTTLSYLHTWSKLQAEIRARRLCM  125 (158)
Q Consensus        57 ~re~~AAi~IQsa~RGylaRr~~~~lk-~ivrLQal~RG~lvRkq~~~~lr~~~A~vkIQs~iRgr~~Rm  125 (158)
                      +++..||+.||++||||++|+.|..++ +++.||+.+||+++|+.+.. ++...+++.||+.+|++.+|.
T Consensus       813 lr~~~AAi~IQs~~Rg~~~Rk~y~~lr~aai~IQs~~Rg~laRr~~~~-lr~~~aav~IQ~~~Rg~l~R~  881 (1080)
T 2dfs_A          813 LRRTRAAIIIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQM-MLREHKSIIIQKHVRGWLARV  881 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHTTTHHHH
T ss_pred             cccchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence            355778888888888888888888655 78888999999999888743 333345555655555554443

>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}

Probab=99.06  E-value=2.3e-10  Score=72.21  Aligned_cols=42  Identities=17%  Similarity=0.205  Sum_probs=36.7

Q ss_pred             HHHHHHHHHHhhchHHHHHHHhhh---hhHHHHhhhhcHHHHHHH
Q 031504           60 DVAAIRIQTAFRAYKARKTFRRLK---GTIRLQGVSQRHSVQKQA  101 (158)
Q Consensus        60 ~~AAi~IQsa~RGylaRr~~~~lk---~ivrLQal~RG~lvRkq~  101 (158)
                      ..||+.||+.||||++|+.|..++   +++.||+.+||+++|+.|
T Consensus         3 r~a~i~iQ~~~Rg~l~R~~~~~~~~~~aai~IQ~~~Rg~~~Rk~y   47 (48)
T 1n2d_C            3 SQAIKYLQNNIKGFIIRQRVNDEMKVNCATLLQAAYRGHSIRANV   47 (48)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Confidence            468999999999999999998554   788999999999998876

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=99.03  E-value=7.1e-10  Score=107.52  Aligned_cols=65  Identities=26%  Similarity=0.277  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHhhchHHHHHHHhhh-hhHHHHhhhhcHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 031504           60 DVAAIRIQTAFRAYKARKTFRRLK-GTIRLQGVSQRHSVQKQATTTLSYLHTWSKLQAEIRARRLCM  125 (158)
Q Consensus        60 ~~AAi~IQsa~RGylaRr~~~~lk-~ivrLQal~RG~lvRkq~~~~lr~~~A~vkIQs~iRgr~~Rm  125 (158)
                      ..||+.||++||||++|+.|..++ +++.||+.+||+++|+.+. .++...|++.||+.+|++.+|.
T Consensus       768 ~~aa~~IQa~~Rg~l~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~~-~lr~~~AAi~IQs~~Rg~~~Rk  833 (1080)
T 2dfs_A          768 RAACIRIQKTIRGWLMRKKYMRMRRAAITIQRYVRGHQARCYAT-FLRRTRAAIIIQKFQRMYVVRK  833 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhccc-ccccchhHHHHHHHHhhHHHHH
Confidence            579999999999999999999666 7899999999999999884 4556778888888888877665

>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}

Probab=98.54  E-value=1.5e-07  Score=59.09  Aligned_cols=42  Identities=14%  Similarity=0.108  Sum_probs=36.8

Q ss_pred             hhhHHHHhhhhcHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 031504           83 KGTIRLQGVSQRHSVQKQATTTLSYLHTWSKLQAEIRARRLCM  125 (158)
Q Consensus        83 k~ivrLQal~RG~lvRkq~~~~lr~~~A~vkIQs~iRgr~~Rm  125 (158)
                      .+++.||+.+||+++|+.+. .++...|+++||+.+||+.+|.
T Consensus         4 ~a~i~iQ~~~Rg~l~R~~~~-~~~~~~aai~IQ~~~Rg~~~Rk   45 (48)
T 1n2d_C            4 QAIKYLQNNIKGFIIRQRVN-DEMKVNCATLLQAAYRGHSIRA   45 (48)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhHHHHH
Confidence            47899999999999999994 4556679999999999998875

>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}

Probab=98.27  E-value=2.7e-06  Score=55.30  Aligned_cols=44  Identities=14%  Similarity=0.045  Sum_probs=38.1

Q ss_pred             hhhHHHHhhhhcHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHh
Q 031504           83 KGTIRLQGVSQRHSVQKQATTTLSYLHTWSKLQAEIRARRLCMVKEG  129 (158)
Q Consensus        83 k~ivrLQal~RG~lvRkq~~~~lr~~~A~vkIQs~iRgr~~Rm~~e~  129 (158)
                      .+++.||+.+||+++|+.|....   .+++.||+.+||+.+|...+.
T Consensus         6 ~aai~IQ~~~Rg~~~Rk~~~~~r---~aai~IQ~~~Rg~~aR~~~~~   49 (58)
T 2ix7_C            6 AACIRIQKTIRGWLLRKRYLCMQ---RAAITVQRYVRGYQARCYAKF   49 (58)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence            47899999999999999995443   799999999999999986554

>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}

Probab=97.95  E-value=1.5e-05  Score=52.87  Aligned_cols=44  Identities=14%  Similarity=-0.086  Sum_probs=33.0

Q ss_pred             hhHHHHhhhhcHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhH
Q 031504           84 GTIRLQGVSQRHSVQKQATTTLSYLHTWSKLQAEIRARRLCMVK  127 (158)
Q Consensus        84 ~ivrLQal~RG~lvRkq~~~~lr~~~A~vkIQs~iRgr~~Rm~~  127 (158)
                      .++.||+.+||+++|+.|...+....|+..||..+|++..+..-
T Consensus         6 i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~lr~w   49 (63)
T 2bl0_A            6 IVKVVQAAARGWVERKHFRQAREKSVSARIIQDNIRAYLEFKNW   49 (63)
T ss_dssp             HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence            36777888888888888877766677777888888887766543

>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A

Probab=97.94  E-value=1.8e-05  Score=52.60  Aligned_cols=43  Identities=14%  Similarity=-0.063  Sum_probs=28.8

Q ss_pred             hhHHHHhhhhcHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhh
Q 031504           84 GTIRLQGVSQRHSVQKQATTTLSYLHTWSKLQAEIRARRLCMV  126 (158)
Q Consensus        84 ~ivrLQal~RG~lvRkq~~~~lr~~~A~vkIQs~iRgr~~Rm~  126 (158)
                      .++.||+.+||+++|+.|...+....|+..||..+|++..+..
T Consensus         8 i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~l~~   50 (64)
T 1wdc_A            8 IISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRN   50 (64)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            3566677777777777776666666666677777777666543

>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}

Probab=97.93  E-value=4.7e-06  Score=49.57  Aligned_cols=24  Identities=33%  Similarity=0.501  Sum_probs=21.3

Q ss_pred             hhHHHHHHHHHHHhhchHHHHHHH
Q 031504           57 PVEDVAAIRIQTAFRAYKARKTFR   80 (158)
Q Consensus        57 ~re~~AAi~IQsa~RGylaRr~~~   80 (158)
                      .+|+.||++||.+||+|+.|+.+.
T Consensus         3 k~Ee~aA~vIQrA~R~yl~rr~~~   26 (31)
T 2l53_B            3 GSEEVSAMVIQRAFRRHLLQRSLK   26 (31)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhc
Confidence            568999999999999999998754

>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}

Probab=97.89  E-value=5.1e-06  Score=47.94  Aligned_cols=22  Identities=41%  Similarity=0.607  Sum_probs=19.5

Q ss_pred             hhHHHHHHHHHHHhhchHHHHH
Q 031504           57 PVEDVAAIRIQTAFRAYKARKT   78 (158)
Q Consensus        57 ~re~~AAi~IQsa~RGylaRr~   78 (158)
                      .+|+.||++||.+||+|+.|+.
T Consensus         3 k~Ee~aA~vIQrA~R~yl~~~~   24 (27)
T 2kxw_B            3 KQEEVSAIVIQRAYRRYLLKQK   24 (27)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhh
Confidence            4689999999999999998864

>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A

Probab=97.66  E-value=8.6e-05  Score=49.21  Aligned_cols=44  Identities=20%  Similarity=0.260  Sum_probs=37.7

Q ss_pred             hHHHHHHHHHHHhhchHHHHHHHhh---h-hhHHHHhhhhcHHHHHHH
Q 031504           58 VEDVAAIRIQTAFRAYKARKTFRRL---K-GTIRLQGVSQRHSVQKQA  101 (158)
Q Consensus        58 re~~AAi~IQsa~RGylaRr~~~~l---k-~ivrLQal~RG~lvRkq~  101 (158)
                      +-...++.||++.|||++|+.|..+   . ++..||.-+|+++.++..
T Consensus         4 ~l~~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~l~~w   51 (64)
T 1wdc_A            4 RLSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNW   51 (64)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence            4457899999999999999999966   2 677899999999998854

>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}

Probab=97.56  E-value=7.9e-05  Score=49.31  Aligned_cols=42  Identities=21%  Similarity=0.140  Sum_probs=36.3

Q ss_pred             HHHHHHHHHHhhchHHHHHHHhh---h-hhHHHHhhhhcHHHHHHH
Q 031504           60 DVAAIRIQTAFRAYKARKTFRRL---K-GTIRLQGVSQRHSVQKQA  101 (158)
Q Consensus        60 ~~AAi~IQsa~RGylaRr~~~~l---k-~ivrLQal~RG~lvRkq~  101 (158)
                      ...++.||++.|||++|+.|..+   . ++..||.-+|+++.++..
T Consensus         4 ~~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~lr~w   49 (63)
T 2bl0_A            4 GEIVKVVQAAARGWVERKHFRQAREKSVSARIIQDNIRAYLEFKNW   49 (63)
T ss_dssp             HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence            46789999999999999999966   2 677899999999998754

>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...

Probab=97.48  E-value=9.7e-05  Score=70.36  Aligned_cols=42  Identities=21%  Similarity=0.272  Sum_probs=33.9

Q ss_pred             HHHHHHHHHHhhchHHHHHHHhh----hhhHHHHhhhhcHHHHHHH
Q 031504           60 DVAAIRIQTAFRAYKARKTFRRL----KGTIRLQGVSQRHSVQKQA  101 (158)
Q Consensus        60 ~~AAi~IQsa~RGylaRr~~~~l----k~ivrLQal~RG~lvRkq~  101 (158)
                      ..+|+.||++||||++|+.|..+    .+++.||..+||+++|+.+
T Consensus       779 ~~~~~~iQa~~Rg~l~R~~~~k~~~~r~a~~~IQ~~~R~~~~~r~~  824 (837)
T 1kk8_A          779 SKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNW  824 (837)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcch
Confidence            35788899999999999988866    3678888888888888765

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=97.26  E-value=0.00017  Score=70.15  Aligned_cols=42  Identities=21%  Similarity=0.186  Sum_probs=37.2

Q ss_pred             HHHHHHHHHHhhchHHHHHHHhhh----hhHHHHhhhhcHHHHHHH
Q 031504           60 DVAAIRIQTAFRAYKARKTFRRLK----GTIRLQGVSQRHSVQKQA  101 (158)
Q Consensus        60 ~~AAi~IQsa~RGylaRr~~~~lk----~ivrLQal~RG~lvRkq~  101 (158)
                      ..+|+.||++||||++|+.|..++    +++.||+.+||+++++.+
T Consensus       792 ~~~~~~iQ~~~Rg~l~R~~~~k~~~~~~a~~~iQ~~~r~~~~~k~~  837 (1184)
T 1i84_S          792 TDVIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRSFMNVXHW  837 (1184)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            368999999999999999999663    789999999999999764

>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}

Probab=96.81  E-value=0.0012  Score=51.51  Aligned_cols=35  Identities=17%  Similarity=0.464  Sum_probs=29.2

Q ss_pred             hHHHHHHHHHHHhhchHHHHHHH-hhhhhHHHHhhh
Q 031504           58 VEDVAAIRIQTAFRAYKARKTFR-RLKGTIRLQGVS   92 (158)
Q Consensus        58 re~~AAi~IQsa~RGylaRr~~~-~lk~ivrLQal~   92 (158)
                      -+..|+|.||+++|||++|+.++ ++.|++.+.++.
T Consensus        43 yR~~~~i~iQktvR~~L~rkkhkPRi~g~~kv~~L~   78 (148)
T 3gn4_A           43 YRAEACIKMQKTIRMWLCKRRHKPRIDGLVKVGTLK   78 (148)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            45679999999999999999998 778877776654

>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...

Probab=96.56  E-value=0.0042  Score=59.19  Aligned_cols=46  Identities=13%  Similarity=-0.101  Sum_probs=39.2

Q ss_pred             hhHHHHhhhhcHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHh
Q 031504           84 GTIRLQGVSQRHSVQKQATTTLSYLHTWSKLQAEIRARRLCMVKEG  129 (158)
Q Consensus        84 ~ivrLQal~RG~lvRkq~~~~lr~~~A~vkIQs~iRgr~~Rm~~e~  129 (158)
                      .++.||+.+||+++|+.|...+....|++.||+.+|++..+.....
T Consensus       781 ~~~~iQa~~Rg~l~R~~~~k~~~~r~a~~~IQ~~~R~~~~~r~~~w  826 (837)
T 1kk8_A          781 IISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNWQW  826 (837)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHH
Confidence            5789999999999999997766667899999999999988765433

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=96.52  E-value=0.0041  Score=60.55  Aligned_cols=42  Identities=14%  Similarity=0.007  Sum_probs=37.3

Q ss_pred             hhHHHHhhhhcHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 031504           84 GTIRLQGVSQRHSVQKQATTTLSYLHTWSKLQAEIRARRLCM  125 (158)
Q Consensus        84 ~ivrLQal~RG~lvRkq~~~~lr~~~A~vkIQs~iRgr~~Rm  125 (158)
                      .++.||+.+||+++|+.|...+....|++.||+.+|++..+.
T Consensus       794 ~~~~iQ~~~Rg~l~R~~~~k~~~~~~a~~~iQ~~~r~~~~~k  835 (1184)
T 1i84_S          794 VIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRSFMNVX  835 (1184)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            578999999999999999877767789999999999997764

>4dck_A Sodium channel protein type 5 subunit alpha; IQ-motif, EF-hand, voltage-gated sodium channel regulation, CTD binds to FGF13 and CAM. CAM binds to Ca2+.; 2.20A {Homo sapiens} PDB: 2kbi_A

Probab=93.73  E-value=0.045  Score=43.23  Aligned_cols=26  Identities=31%  Similarity=0.448  Sum_probs=22.6

Q ss_pred             chhHHHHHHHHHHHhhchHHHHHHHh
Q 031504           56 MPVEDVAAIRIQTAFRAYKARKTFRR   81 (158)
Q Consensus        56 ~~re~~AAi~IQsa~RGylaRr~~~~   81 (158)
                      ..++..||++||.+||.|+.|+.+..
T Consensus       126 ~~~e~~aA~~IQra~R~~~~r~~~~~  151 (168)
T 4dck_A          126 RKHEEVSAMVIQRAFRRHLLQRSLKH  151 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccc
Confidence            36788999999999999999988764

>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A

Probab=93.64  E-value=0.04  Score=52.24  Aligned_cols=25  Identities=36%  Similarity=0.626  Sum_probs=21.2

Q ss_pred             HHHHHHHHHHhhchHHHHHHHhhhh
Q 031504           60 DVAAIRIQTAFRAYKARKTFRRLKG   84 (158)
Q Consensus        60 ~~AAi~IQsa~RGylaRr~~~~lk~   84 (158)
                      ..+|+.||++||||++|++|..++.
T Consensus       768 ~~~~~~iQ~~~Rg~l~R~~~~~~r~  792 (795)
T 1w7j_A          768 RAACIRIQKTIRGWLMRKKYMRMRR  792 (795)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4589999999999999999987763

>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}

Probab=91.43  E-value=0.21  Score=48.85  Aligned_cols=41  Identities=7%  Similarity=0.184  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHhhchHHHHHHHhhh-hhHHHHhhhhcHHHHHHH
Q 031504           60 DVAAIRIQTAFRAYKARKTFRRLK-GTIRLQGVSQRHSVQKQA  101 (158)
Q Consensus        60 ~~AAi~IQsa~RGylaRr~~~~lk-~ivrLQal~RG~lvRkq~  101 (158)
                      ..+|+.||. +|||++|++|+.++ +++.+|.+.|+...|+..
T Consensus       775 ~~~~~~iq~-~r~~l~r~~~~k~~~~a~~i~~~~r~~~~r~~~  816 (1052)
T 4anj_A          775 DHLAELVKR-VNHWLICSRWKKVQWCSLSVIKLKNKIKYRAEA  816 (1052)
T ss_dssp             HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            467777775 68999999998666 677888877777665543

>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}

Probab=82.70  E-value=2.3  Score=32.92  Aligned_cols=23  Identities=9%  Similarity=0.211  Sum_probs=19.1

Q ss_pred             hhHHHHhhhhcHHHHHHHHHHHH
Q 031504           84 GTIRLQGVSQRHSVQKQATTTLS  106 (158)
Q Consensus        84 ~ivrLQal~RG~lvRkq~~~~lr  106 (158)
                      .++.+|..+|||++|+++.-...
T Consensus        47 ~~i~iQktvR~~L~rkkhkPRi~   69 (148)
T 3gn4_A           47 ACIKMQKTIRMWLCKRRHKPRID   69 (148)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHH
Confidence            47899999999999999965443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	158
d1w7ja2	730	c.37.1.9 (A:63-792) Myosin S1, motor domain {Chick	0.004

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]} Length = 730

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

 Score = 34.3 bits (78), Expect = 0.004
 Identities = 9/22 (40%), Positives = 13/22 (59%)

Query: 62  AAIRIQTAFRAYKARKTFRRLK 83
           A IRIQ   R +  RK + R++
Sbjct: 708 ACIRIQKTIRGWLMRKKYMRMR 729

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	158
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	97.81
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	97.73
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	97.01
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	96.46
d1w7ja2	730	Myosin S1, motor domain {Chicken (Gallus gallus),	94.88

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=97.81  E-value=5.7e-06  Score=75.65  Aligned_cols=43  Identities=21%  Similarity=0.272  Sum_probs=37.9

Q ss_pred             HHHHHHHHHHHhhchHHHHHHHhhh----hhHHHHhhhhcHHHHHHH
Q 031504           59 EDVAAIRIQTAFRAYKARKTFRRLK----GTIRLQGVSQRHSVQKQA  101 (158)
Q Consensus        59 e~~AAi~IQsa~RGylaRr~~~~lk----~ivrLQal~RG~lvRkq~  101 (158)
                      ...+|+.||+.||||++|+.|+.++    +++.||..+||+++|+.+
T Consensus       730 l~~~~~~IQ~~~R~~~~Rk~y~k~r~~~~ai~~iQ~~~R~~~~rr~~  776 (789)
T d1kk8a2         730 LSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNW  776 (789)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence            3568999999999999999999776    578889999999999876

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=97.73  E-value=7.9e-06  Score=74.72  Aligned_cols=42  Identities=14%  Similarity=0.111  Sum_probs=35.1

Q ss_pred             HHHHHHHHHHhhchHHHHHHHhh----hhhHHHHhhhhcHHHHHHH
Q 031504           60 DVAAIRIQTAFRAYKARKTFRRL----KGTIRLQGVSQRHSVQKQA  101 (158)
Q Consensus        60 ~~AAi~IQsa~RGylaRr~~~~l----k~ivrLQal~RG~lvRkq~  101 (158)
                      ..+|+.||+.||||++|+.|..+    .+++.||+.+||+++||.+
T Consensus       735 ~~~~~~IQ~~~Rg~l~Rk~~~~~~~~r~a~~~IQ~~~R~~~~~r~~  780 (794)
T d2mysa2         735 AEIITATQARCRGFLMRVEYRAMVERRESIFCIQYNVRSFMNVKHW  780 (794)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            46889999999999999999754    2688888888888888876

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=97.01  E-value=0.00062  Score=61.91  Aligned_cols=47  Identities=6%  Similarity=-0.137  Sum_probs=40.3

Q ss_pred             hhhHHHHhhhhcHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHh
Q 031504           83 KGTIRLQGVSQRHSVQKQATTTLSYLHTWSKLQAEIRARRLCMVKEG  129 (158)
Q Consensus        83 k~ivrLQal~RG~lvRkq~~~~lr~~~A~vkIQs~iRgr~~Rm~~e~  129 (158)
                      +.++.||+.+||+++|++|...+...+|++.||+.+|++..|.....
T Consensus       736 ~~~~~IQ~~~Rg~l~Rk~~~~~~~~r~a~~~IQ~~~R~~~~~r~~~~  782 (794)
T d2mysa2         736 EIITATQARCRGFLMRVEYRAMVERRESIFCIQYNVRSFMNVKHWPW  782 (794)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence            46889999999999999998777667899999999999988765443

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=96.46  E-value=0.0024  Score=57.85  Aligned_cols=45  Identities=16%  Similarity=-0.062  Sum_probs=37.2

Q ss_pred             hhhHHHHhhhhcHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhH
Q 031504           83 KGTIRLQGVSQRHSVQKQATTTLSYLHTWSKLQAEIRARRLCMVK  127 (158)
Q Consensus        83 k~ivrLQal~RG~lvRkq~~~~lr~~~A~vkIQs~iRgr~~Rm~~  127 (158)
                      +.++.||+.+||+++|++|........|++.||+.+|++.+|-..
T Consensus       732 ~~~~~IQ~~~R~~~~Rk~y~k~r~~~~ai~~iQ~~~R~~~~rr~~  776 (789)
T d1kk8a2         732 KIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNW  776 (789)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence            368889999999999999976555556899999999999877543

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

Probab=94.88  E-value=0.0077  Score=53.78  Aligned_cols=25  Identities=36%  Similarity=0.602  Sum_probs=20.0

Q ss_pred             HHHHHHHHHHHhhchHHHHHHHhhh
Q 031504           59 EDVAAIRIQTAFRAYKARKTFRRLK   83 (158)
Q Consensus        59 e~~AAi~IQsa~RGylaRr~~~~lk   83 (158)
                      ...+|+.||+.||||++|++|..+|
T Consensus       705 l~~~~~~iQ~~~R~~l~Rk~~~r~r  729 (730)
T d1w7ja2         705 LRAACIRIQKTIRGWLMRKKYMRMR  729 (730)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3457889999999999999888664